Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOC2L	26155	broad.mit.edu	37	1	888594	888594	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:888594G>A	uc001abz.3	-	9	1022	c.963C>T	c.(961-963)TGC>TGT	p.C321C	NOC2L_uc001aby.3_Silent_p.C118C|NOC2L_uc009vjq.2_Silent_p.C321C	NM_015658	NP_056473	Q9Y3T9	NOC2L_HUMAN	nucleolar complex associated 2 homolog	321						nucleolus	protein binding			ovary(1)|skin(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.86e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.08e-23)|Colorectal(212;0.000161)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(365;0.000475)|Kidney(185;0.00231)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		TCTTGTGCCGGCAGACTCTGC	0.582													4	43					0	0	1	0	0
PLEKHN1	84069	broad.mit.edu	37	1	907761	907761	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:907761G>A	uc001ace.2	+	9	1150	c.1115G>A	c.(1114-1116)GGG>GAG	p.G372E	PLEKHN1_uc001acd.2_Missense_Mutation_p.G320E|PLEKHN1_uc001acf.2_Missense_Mutation_p.G332E	NM_032129	NP_115505	Q494U1	PKHN1_HUMAN	pleckstrin homology domain containing, family N	372											0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.00095)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CACAGGGAGGGGGCCCCGCCG	0.672													7	3					0	0	1	0	0
AGRN	375790	broad.mit.edu	37	1	981129	981129	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:981129C>T	uc001ack.1	+	15	2603	c.2553C>T	c.(2551-2553)CCC>CCT	p.P851P		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	851	Laminin EGF-like 2.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		GCTGTGATCCCCAAGGCGCCG	0.657													27	81					0	0	1	0	0
TTLL10	254173	broad.mit.edu	37	1	1116178	1116178	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1116178C>T	uc001acy.2	+	8	844	c.693C>T	c.(691-693)ACC>ACT	p.T231T	uc001acx.1_5'Flank|TTLL10_uc010nyg.1_Silent_p.T231T|TTLL10_uc001acz.1_Silent_p.T158T	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	231	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TGCTCAGCACCCTTCGGGGAC	0.557													8	15					0	0	1	0	0
TTLL10	254173	broad.mit.edu	37	1	1119445	1119445	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1119445G>A	uc001acy.2	+	12	1385	c.1234G>A	c.(1234-1236)GAC>AAC	p.D412N	TTLL10_uc010nyg.1_Missense_Mutation_p.D412N|TTLL10_uc001acz.1_Missense_Mutation_p.D339N	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	412	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CCATTCCAGCGACCTCGGCGG	0.597													58	208					0	0	1	0	0
TNFRSF18	8784	broad.mit.edu	37	1	1139585	1139585	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1139585G>A	uc001adc.2	-	4	568	c.430C>T	c.(430-432)CCT>TCT	p.P144S	TNFRSF18_uc001ada.2_Missense_Mutation_p.P72S|TNFRSF18_uc001adb.2_Missense_Mutation_p.P144S|TNFRSF18_uc001add.2_Intron	NM_004195	NP_004186	Q9Y5U5	TNR18_HUMAN	tumor necrosis factor receptor superfamily,	144	TNFR-Cys 3.|Extracellular (Potential).				anti-apoptosis|apoptosis	extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TTGTTCCCAGGGAACACAGTG	0.682													3	15					0	0	1	0	0
TNFRSF18	8784	broad.mit.edu	37	1	1139810	1139810	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1139810C>T	uc001adc.2	-	3	505	c.367G>A	c.(367-369)GGC>AGC	p.G123S	TNFRSF18_uc001ada.2_Missense_Mutation_p.G51S|TNFRSF18_uc001adb.2_Missense_Mutation_p.G123S|TNFRSF18_uc001add.2_Missense_Mutation_p.G123S	NM_004195	NP_004186	Q9Y5U5	TNR18_HUMAN	tumor necrosis factor receptor superfamily,	123	TNFR-Cys 3.|Extracellular (Potential).				anti-apoptosis|apoptosis	extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CCTTCGTGGCCCCCGGAGAAG	0.652													18	35					0	0	1	0	0
TNFRSF4	7293	broad.mit.edu	37	1	1147102	1147102	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1147102C>T	uc001ade.2	-	6	750	c.745G>A	c.(745-747)GAT>AAT	p.D249N	TNFRSF4_uc001adf.2_Missense_Mutation_p.D253N	NM_003327	NP_003318	P43489	TNR4_HUMAN	tumor necrosis factor receptor superfamily,	249	Cytoplasmic (Potential).				immune response|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of immunoglobulin secretion|T cell proliferation	integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TTGTGGGCATCGGGGGGCAGC	0.706													8	8					0	0	1	0	0
TNFRSF4	7293	broad.mit.edu	37	1	1149139	1149139	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1149139G>A	uc001ade.2	-	2	177	c.172C>T	c.(172-174)CGC>TGC	p.R58C	TNFRSF4_uc001adf.2_5'UTR	NM_003327	NP_003318	P43489	TNR4_HUMAN	tumor necrosis factor receptor superfamily,	58	Extracellular (Potential).|TNFR-Cys 1.				immune response|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of immunoglobulin secretion|T cell proliferation	integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TTCTGGGAGCGGCTGCAGCGG	0.697													8	13					0	0	1	0	0
UBE2J2	118424	broad.mit.edu	37	1	1203257	1203257	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1203257G>A	uc001adn.2	-	2	426	c.116C>T	c.(115-117)TCG>TTG	p.S39L	UBE2J2_uc001adm.2_5'UTR|UBE2J2_uc001ado.2_Missense_Mutation_p.S39L|UBE2J2_uc001adp.2_Missense_Mutation_p.S39L|UBE2J2_uc001adq.2_5'UTR|UBE2J2_uc001adr.2_Intron|UBE2J2_uc001ads.2_5'UTR	NM_194458	NP_919440	Q8N2K1	UB2J2_HUMAN	ubiquitin conjugating enzyme E2, J2 isoform 3	39	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ATP binding|ubiquitin-protein ligase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.66e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.53e-21)|Colorectal(212;0.00019)|COAD - Colon adenocarcinoma(227;0.000215)|Kidney(185;0.00255)|BRCA - Breast invasive adenocarcinoma(365;0.00266)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0371)|Lung(427;0.205)		GAGAATATTCGAAGGGAGGGG	0.632													59	197					0	0	1	0	0
SCNN1D	6339	broad.mit.edu	37	1	1222349	1222349	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1222349C>T	uc001adu.1	+	7	1245	c.621C>T	c.(619-621)TTC>TTT	p.F207F	SCNN1D_uc001adt.1_Silent_p.F371F|SCNN1D_uc001adw.2_Silent_p.F273F|SCNN1D_uc001adx.2_5'UTR|SCNN1D_uc001adv.2_Silent_p.F207F	NM_002978	NP_002969			sodium channel, nonvoltage-gated 1, delta												0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;2.46e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		GAGTGGGGTTCAGACTGGTGA	0.706													16	36					0	0	1	0	0
ACAP3	116983	broad.mit.edu	37	1	1229502	1229502	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1229502G>A	uc001aeb.2	-	22	2291	c.2217C>T	c.(2215-2217)CCC>CCT	p.P739P	ACAP3_uc001ady.2_Silent_p.P469P|ACAP3_uc001aea.2_Silent_p.P664P	NM_030649	NP_085152	Q96P50	ACAP3_HUMAN	ArfGAP with coiled-coil, ankyrin repeat and PH	739	ANK 2.				filopodium assembly|regulation of ARF GTPase activity|signal transduction		ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding				0						CGTGGTGCAGGGGCGCCCGGC	0.498													3	5					0	0	1	0	0
GLTPD1	80772	broad.mit.edu	37	1	1262938	1262938	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1262938C>T	uc001aeo.2	+	3	855	c.440C>T	c.(439-441)GCC>GTC	p.A147V	CPSF3L_uc001aee.1_5'Flank|CPSF3L_uc001aef.1_5'Flank|CPSF3L_uc009vjz.1_5'Flank|CPSF3L_uc010nyj.1_5'Flank|CPSF3L_uc001aeg.1_5'Flank|CPSF3L_uc001aeh.1_5'Flank|CPSF3L_uc001aei.1_5'Flank|CPSF3L_uc001aej.1_5'Flank|CPSF3L_uc001aek.1_5'Flank|CPSF3L_uc001aem.1_5'Flank|CPSF3L_uc001ael.1_5'Flank|CPSF3L_uc001aen.1_5'Flank	NM_001029885	NP_001025056	Q5TA50	GLTD1_HUMAN	glycolipid transfer protein domain containing 1	147						cytoplasm	glycolipid binding|glycolipid transporter activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;4.95e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GCCTCGCTGGCCGCCTACCAC	0.721													3	10					0	0	1	0	0
MXRA8	54587	broad.mit.edu	37	1	1290115	1290116	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1290115_1290116GG>AC	uc001aew.2	-	5	926_927	c.895_896CC>GT	c.(895-897)CCC>GTC	p.P299V	MXRA8_uc001aex.3_Missense_Mutation_p.P299V|MXRA8_uc001aey.3_Missense_Mutation_p.P299V|MXRA8_uc010nyl.1_Missense_Mutation_p.P299V|MXRA8_uc001aez.2_Missense_Mutation_p.P198V|MXRA8_uc001afa.2_Missense_Mutation_p.P290V	NM_032348	NP_115724	Q9BRK3	MXRA8_HUMAN	matrix-remodelling associated 8 precursor	299	Extracellular (Potential).					integral to membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GCCCCGGGGGGGCGGCTCCGCG	0.733													7	19					0	0	1	0	0
MXRA8	54587	broad.mit.edu	37	1	1290374	1290374	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1290374C>T	uc001aew.2	-	5	668	c.637G>A	c.(637-639)GGG>AGG	p.G213R	MXRA8_uc001aex.3_Missense_Mutation_p.G213R|MXRA8_uc001aey.3_Missense_Mutation_p.G213R|MXRA8_uc010nyl.1_Missense_Mutation_p.G213R|MXRA8_uc001aez.2_Missense_Mutation_p.G112R|MXRA8_uc001afa.2_Missense_Mutation_p.G204R	NM_032348	NP_115724	Q9BRK3	MXRA8_HUMAN	matrix-remodelling associated 8 precursor	213	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TGCGGGACCCCGGGCGGCTGC	0.741													5	7					0	0	1	0	0
VWA1	64856	broad.mit.edu	37	1	1374575	1374575	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1374575C>T	uc001afs.2	+	3	966	c.746C>T	c.(745-747)CCC>CTC	p.P249L	VWA1_uc001afr.2_Missense_Mutation_p.P37L	NM_022834	NP_073745	Q6PCB0	VWA1_HUMAN	von Willebrand factor A domain containing 1	249	Fibronectin type-III 1.					basement membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GAGCTGGTGCCCAGCGCCCAG	0.701													3	25					0	0	1	0	0
VWA1	64856	broad.mit.edu	37	1	1374645	1374645	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1374645C>T	uc001afs.2	+	3	1036	c.816C>T	c.(814-816)GGC>GGT	p.G272G	VWA1_uc001afr.2_Silent_p.G60G	NM_022834	NP_073745	Q6PCB0	VWA1_HUMAN	von Willebrand factor A domain containing 1	272	Fibronectin type-III 1.					basement membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TCTGGGCCGGCCTCGACCCGG	0.706													5	18					0	0	1	0	0
ATAD3C	219293	broad.mit.edu	37	1	1387776	1387776	+	Missense_Mutation	SNP	C	T	T	rs144852834	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1387776C>T	uc001aft.2	+	3	1179	c.184C>T	c.(184-186)CGT>TGT	p.R62C		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C	62							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GGAAGGATTCCGTGCCTTTGT	0.577													33	85					0	0	1	0	0
MIB2	142678	broad.mit.edu	37	1	1562297	1562297	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1562297C>T	uc001agg.2	+	10	1459	c.1332C>T	c.(1330-1332)ACC>ACT	p.T444T	MIB2_uc001agh.2_Silent_p.T430T|MIB2_uc001agi.2_Silent_p.T440T|MIB2_uc001agj.2_Silent_p.T285T|MIB2_uc001agk.2_Silent_p.T379T|MIB2_uc001agl.1_Silent_p.T400T|MIB2_uc001agm.2_Silent_p.T321T|MIB2_uc010nyq.1_Silent_p.T400T|MIB2_uc009vkh.2_Silent_p.T250T|MIB2_uc001agn.2_Silent_p.T76T|MIB2_uc001ago.2_5'Flank	NM_080875	NP_543151	Q96AX9	MIB2_HUMAN	mindbomb homolog 2	444					Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		AGCGGTGGACCTTCAGCCCCT	0.687													9	14					0	0	1	0	0
NADK	65220	broad.mit.edu	37	1	1686834	1686834	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1686834G>A	uc009vkw.2	-	7	788	c.667C>T	c.(667-669)CAA>TAA	p.Q223*	NADK_uc001aic.2_Nonsense_Mutation_p.Q223*|NADK_uc001aid.3_Nonsense_Mutation_p.Q223*|NADK_uc001aie.2_Nonsense_Mutation_p.Q368*|NADK_uc010nyv.1_Nonsense_Mutation_p.Q191*|NADK_uc009vkx.1_Nonsense_Mutation_p.Q101*	NM_023018	NP_075394	O95544	NADK_HUMAN	NAD kinase	223					ATP metabolic process|NAD metabolic process|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|NAD+ kinase activity|protein binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;8.75e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.33e-23)|GBM - Glioblastoma multiforme(42;1.35e-07)|Colorectal(212;0.000203)|COAD - Colon adenocarcinoma(227;0.000225)|Kidney(185;0.00265)|STAD - Stomach adenocarcinoma(132;0.00655)|BRCA - Breast invasive adenocarcinoma(365;0.00855)|KIRC - Kidney renal clear cell carcinoma(229;0.0382)|Lung(427;0.207)		TGAGTAACTTGGGACTGAAAG	0.577													19	260					0	0	1	0	0
CALML6	163688	broad.mit.edu	37	1	1848629	1848629	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1848629G>A	uc001aih.1	+	6	997	c.543G>A	c.(541-543)CAG>CAA	p.Q181Q		NM_138705	NP_619650	Q8TD86	CALL6_HUMAN	calmodulin-like 6	181						cytoplasm|nucleus	calcium ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.94e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.83e-23)|GBM - Glioblastoma multiforme(42;3.23e-08)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00437)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		AGCTGATCCAGTAGGTGCAGC	0.667													3	8					0	0	1	0	0
KIAA1751	85452	broad.mit.edu	37	1	1890603	1890603	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1890603C>T	uc001aim.1	-	16	1963	c.1807G>A	c.(1807-1809)GGC>AGC	p.G603S	KIAA1751_uc009vkz.1_Missense_Mutation_p.G603S	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	603										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		GAAAACTCGCCCGTCTGAGCC	0.423													22	86					0	0	1	0	0
KIAA1751	85452	broad.mit.edu	37	1	1902109	1902109	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1902109C>T	uc001aim.1	-	10	1191	c.1035G>A	c.(1033-1035)GAG>GAA	p.E345E	KIAA1751_uc009vkz.1_Silent_p.E345E	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	345	Potential.									pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		TCTTCTGGGCCTCCAGCTCCT	0.667													4	18					0	0	1	0	0
KIAA1751	85452	broad.mit.edu	37	1	1920052	1920052	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1920052C>T	uc001aim.1	-	4	351	c.195G>A	c.(193-195)AAG>AAA	p.K65K	KIAA1751_uc009vkz.1_Silent_p.K65K|KIAA1751_uc001ain.1_Silent_p.K65K	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	65										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		CAGCTGTTTTCTTCTTCAATT	0.488													27	66					0	0	1	0	0
KIAA1751	85452	broad.mit.edu	37	1	1920391	1920391	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1920391G>A	uc001aim.1	-	3	245	c.89C>T	c.(88-90)CCG>CTG	p.P30L	KIAA1751_uc009vkz.1_Missense_Mutation_p.P30L|KIAA1751_uc001ain.1_Missense_Mutation_p.P30L	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	30										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		GTCAAACTCCGGATCCTCTAA	0.348													16	47					0	0	1	0	0
GABRD	2563	broad.mit.edu	37	1	1956458	1956458	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1956458C>T	uc001aip.2	+	2	241	c.146C>T	c.(145-147)GCC>GTC	p.A49V		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	49	Extracellular (Probable).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		GGGCTGATAGCCGGCTACGCC	0.677													12	40					0	0	1	0	0
GABRD	2563	broad.mit.edu	37	1	1961051	1961051	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1961051G>A	uc001aip.2	+	8	1004	c.909G>A	c.(907-909)CGG>CGA	p.R303R		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	303						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		CCCTGCCACGGGCATCAGCCA	0.607													9	39					0	0	1	0	0
GABRD	2563	broad.mit.edu	37	1	1961512	1961512	+	Missense_Mutation	SNP	C	T	T	rs79386457	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:1961512C>T	uc001aip.2	+	9	1245	c.1150C>T	c.(1150-1152)CCG>TCG	p.P384S		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	384	Cytoplasmic (Probable).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		GCGCCGCGTCCCGGGGAACCT	0.687													14	38					0	0	1	0	0
MORN1	79906	broad.mit.edu	37	1	2288981	2288982	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2288981_2288982GG>AA	uc001ajb.1	-	10	946_947	c.925_926CC>TT	c.(925-927)CCC>TTC	p.P309F	MORN1_uc009vld.2_Missense_Mutation_p.P285F|MORN1_uc001ajd.1_Missense_Mutation_p.P309F	NM_024848	NP_079124	Q5T089	MORN1_HUMAN	MORN repeat containing 1	309										ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.000194)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.3e-15)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;2.21e-37)|OV - Ovarian serous cystadenocarcinoma(86;5.01e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00137)|BRCA - Breast invasive adenocarcinoma(365;0.00488)|STAD - Stomach adenocarcinoma(132;0.00665)|KIRC - Kidney renal clear cell carcinoma(229;0.0203)|Lung(427;0.212)		GGCAGCTCTGGGCCCCGGCACC	0.653													37	101					0	0	1	0	0
PLCH2	9651	broad.mit.edu	37	1	2408075	2408075	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2408075G>A	uc001aji.1	+	1	322	c.48G>A	c.(46-48)GTG>GTA	p.V16V		NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	16	Necessary for plasma membrane localization (By similarity).				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		AGGGAACGGTGGCCTGGCTGG	0.687													7	10					0	0	1	0	0
PLCH2	9651	broad.mit.edu	37	1	2411249	2411249	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2411249C>T	uc001aji.1	+	3	622	c.348C>T	c.(346-348)TTC>TTT	p.F116F	PLCH2_uc010nyz.1_5'Flank|PLCH2_uc009vle.1_5'Flank|PLCH2_uc001ajj.1_5'Flank|PLCH2_uc001ajk.1_5'Flank	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	116	PH.|Necessary for plasma membrane localization (By similarity).				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		ACGGCAGCTTCGACCCCAACT	0.677													5	11					0	0	1	0	0
PLCH2	9651	broad.mit.edu	37	1	2416007	2416007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2416007G>A	uc001aji.1	+	5	1040	c.766G>A	c.(766-768)GAC>AAC	p.D256N	PLCH2_uc010nyz.1_Missense_Mutation_p.D44N|PLCH2_uc009vle.1_Missense_Mutation_p.D44N|PLCH2_uc001ajj.1_Missense_Mutation_p.D44N|PLCH2_uc001ajk.1_Missense_Mutation_p.D44N	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	256					intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		CAACCACAAGGACCACCTGGA	0.622													17	44					0	0	1	0	0
PLCH2	9651	broad.mit.edu	37	1	2418758	2418758	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2418758C>T	uc001aji.1	+	7	1331	c.1057C>T	c.(1057-1059)CAG>TAG	p.Q353*	PLCH2_uc010nyz.1_Nonsense_Mutation_p.Q141*|PLCH2_uc009vle.1_Nonsense_Mutation_p.Q141*|PLCH2_uc001ajj.1_Nonsense_Mutation_p.Q141*|PLCH2_uc001ajk.1_Nonsense_Mutation_p.Q141*	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	353	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		GCTCATGTCCCAGTCACGGGT	0.627													7	25					0	0	1	0	0
PLCH2	9651	broad.mit.edu	37	1	2430192	2430192	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2430192C>T	uc001aji.1	+	18	2633	c.2359C>T	c.(2359-2361)CCC>TCC	p.P787S	PLCH2_uc010nyz.1_Missense_Mutation_p.P575S|PLCH2_uc009vle.1_Missense_Mutation_p.P539S|PLCH2_uc001ajj.1_Missense_Mutation_p.P575S|PLCH2_uc001ajk.1_Missense_Mutation_p.P575S|PLCH2_uc001ajl.1_5'UTR	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	787	C2.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		GATCATCGACCCCTTTGTGGA	0.687													6	15					0	0	1	0	0
PLCH2	9651	broad.mit.edu	37	1	2436319	2436319	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2436319C>T	uc001aji.1	+	22	4192	c.3918C>T	c.(3916-3918)CTC>CTT	p.L1306L	PLCH2_uc010nyz.1_3'UTR|PLCH2_uc009vle.1_Silent_p.L1058L|PLCH2_uc001ajj.1_3'UTR|PLCH2_uc001ajk.1_3'UTR|PLCH2_uc001ajl.1_Silent_p.L158L	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	1306					intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		TGCGCTGGCTCACTGTCTTCC	0.711													7	9					0	0	1	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938364	2938364	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2938364C>T	uc001ajz.2	+	1	319	c.114C>T	c.(112-114)ATC>ATT	p.I38I		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	38						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		TCAGCTCCATCGTGGGGCACC	0.597													15	38					0	0	1	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938588	2938588	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2938588C>T	uc001ajz.2	+	1	543	c.338C>T	c.(337-339)TCC>TTC	p.S113F		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	113						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		ACGGAGCCCTCCCTGAACCCC	0.602													32	61					0	0	1	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938959	2938959	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2938959G>A	uc001ajz.2	+	1	914	c.709G>A	c.(709-711)GAG>AAG	p.E237K		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	237						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		GAGGCCGGAGGAGGTCCTGAG	0.652													18	60					0	0	1	0	0
ACTRT2	140625	broad.mit.edu	37	1	2939141	2939141	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:2939141G>A	uc001ajz.2	+	1	1096	c.891G>A	c.(889-891)GGG>GGA	p.G297G		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	297						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		TCCTCTTTGGGGAGATTGTGC	0.607													35	90					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3102809	3102809	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3102809C>T	uc001akf.2	+	2	238	c.158C>T	c.(157-159)CCC>CTC	p.P53L	PRDM16_uc001akc.2_Missense_Mutation_p.P53L|PRDM16_uc001akd.2_Missense_Mutation_p.P53L|PRDM16_uc001ake.2_Missense_Mutation_p.P53L|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	53					brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CCACCGTCCCCCTTCCCCACC	0.647			T	EVI1	MDS|AML								13	102					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3102863	3102863	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3102863C>T	uc001akf.2	+	2	292	c.212C>T	c.(211-213)CCT>CTT	p.P71L	PRDM16_uc001akc.2_Missense_Mutation_p.P71L|PRDM16_uc001akd.2_Missense_Mutation_p.P71L|PRDM16_uc001ake.2_Missense_Mutation_p.P71L|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	71					brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TACGAGGCCCCTGTCTACATT	0.657			T	EVI1	MDS|AML								15	129					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3313082	3313082	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3313082G>A	uc001akf.2	+	5	681	c.601G>A	c.(601-603)GAG>AAG	p.E201K	PRDM16_uc001akc.2_Missense_Mutation_p.E201K|PRDM16_uc001akd.2_Missense_Mutation_p.E201K|PRDM16_uc001ake.2_Missense_Mutation_p.E201K|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	201	SET.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TAAGGACATTGAGCCAGGTGA	0.572			T	EVI1	MDS|AML								5	13					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3321352	3321352	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3321352G>A	uc001akf.2	+	7	1014	c.934G>A	c.(934-936)GAC>AAC	p.D312N	PRDM16_uc001akc.2_Missense_Mutation_p.D312N|PRDM16_uc001akd.2_Missense_Mutation_p.D312N|PRDM16_uc001ake.2_Missense_Mutation_p.D312N|PRDM16_uc009vlh.2_Missense_Mutation_p.D13N	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	312	C2H2-type 3.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GTACAAATGCGACCAGTGTCC	0.607			T	EVI1	MDS|AML								28	48					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3322099	3322099	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3322099C>T	uc001akf.2	+	8	1153	c.1073C>T	c.(1072-1074)TCG>TTG	p.S358L	PRDM16_uc001akc.2_Missense_Mutation_p.S358L|PRDM16_uc001akd.2_Missense_Mutation_p.S358L|PRDM16_uc001ake.2_Missense_Mutation_p.S358L|PRDM16_uc009vlh.2_Missense_Mutation_p.S59L	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	358	C2H2-type 4.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CACATCCGCTCGCAGCACGTG	0.682			T	EVI1	MDS|AML								19	57					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3328402	3328402	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3328402C>T	uc001akf.2	+	9	1721	c.1641C>T	c.(1639-1641)CTC>CTT	p.L547L	PRDM16_uc001akc.2_Silent_p.L547L|PRDM16_uc001akd.2_Silent_p.L547L|PRDM16_uc001ake.2_Silent_p.L547L|PRDM16_uc009vlh.2_Silent_p.L248L	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	547	Pro-rich.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		ACGCCAAGCTCCCCAGTCCCC	0.682			T	EVI1	MDS|AML								47	105					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3329121	3329121	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3329121C>T	uc001akf.2	+	9	2440	c.2360C>T	c.(2359-2361)CCC>CTC	p.P787L	PRDM16_uc001akc.2_Missense_Mutation_p.P787L|PRDM16_uc001akd.2_Missense_Mutation_p.P787L|PRDM16_uc001ake.2_Missense_Mutation_p.P787L|PRDM16_uc009vlh.2_Missense_Mutation_p.P488L	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	787	Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CCCATCCTGCCCATGCCCAAG	0.711			T	EVI1	MDS|AML								6	62					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3329159	3329159	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3329159G>A	uc001akf.2	+	9	2478	c.2398G>A	c.(2398-2400)GAG>AAG	p.E800K	PRDM16_uc001akc.2_Missense_Mutation_p.E800K|PRDM16_uc001akd.2_Missense_Mutation_p.E800K|PRDM16_uc001ake.2_Missense_Mutation_p.E800K|PRDM16_uc009vlh.2_Missense_Mutation_p.E501K	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	800	Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		ATCCGGCGAGGAGCAGCCGCT	0.692			T	EVI1	MDS|AML								7	21					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3334455	3334456	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3334455_3334456GG>AA	uc001akf.2	+	11	2835_2836	c.2755_2756GG>AA	c.(2755-2757)GGC>AAC	p.G919N	PRDM16_uc001akc.2_Missense_Mutation_p.G918N|PRDM16_uc001akd.2_Missense_Mutation_p.G918N|PRDM16_uc001ake.2_Missense_Mutation_p.G919N|PRDM16_uc009vlh.2_Missense_Mutation_p.G619N	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	919	Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GGCGGACTCGGGCAGCTCCCTG	0.604			T	EVI1	MDS|AML								38	112					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3342181	3342181	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3342181G>A	uc001akf.2	+	13	3056	c.2976G>A	c.(2974-2976)TCG>TCA	p.S992S	PRDM16_uc001akc.2_Silent_p.S991S|PRDM16_uc001akd.2_Silent_p.S991S|PRDM16_uc001ake.2_Silent_p.S992S|PRDM16_uc009vlh.2_Silent_p.S692S	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	992	C2H2-type 9.|Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GCATCTCTTCGAACCTCCAGC	0.632			T	EVI1	MDS|AML								35	76					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3342631	3342631	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3342631G>A	uc001akf.2	+	14	3206	c.3126G>A	c.(3124-3126)GGG>GGA	p.G1042G	PRDM16_uc001akc.2_Silent_p.G1041G|PRDM16_uc001akd.2_Silent_p.G1041G|PRDM16_uc001ake.2_Silent_p.G1042G|PRDM16_uc009vlh.2_Silent_p.G742G	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1042	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		AGCACCCCGGGGTCCTCACGA	0.637			T	EVI1	MDS|AML								17	29					0	0	1	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3386026	3386026	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3386026C>T	uc001akg.3	+	6	1139	c.891C>T	c.(889-891)TTC>TTT	p.F297F	ARHGEF16_uc001aki.2_Silent_p.F9F|ARHGEF16_uc001akj.2_Silent_p.F9F|ARHGEF16_uc009vli.1_5'Flank|ARHGEF16_uc010nzh.1_5'Flank	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	297	DH.|Required for RHOG activation and mediates interaction with EPHA2.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		CGTCGGAGTTCTCCTACCAGC	0.627													18	63					0	0	1	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3391322	3391322	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3391322C>T	uc001akg.3	+	9	1604	c.1356C>T	c.(1354-1356)AGC>AGT	p.S452S	ARHGEF16_uc001aki.2_Silent_p.S164S|ARHGEF16_uc001akj.2_Silent_p.S164S|ARHGEF16_uc010nzh.1_Silent_p.S156S	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	452	DH.|Required for RHOG activation and mediates interaction with EPHA2.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		AGGCTGCCAGCCGTGCACTGA	0.632													14	78					0	0	1	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3395114	3395114	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3395114G>A	uc001akg.3	+	12	2000	c.1752G>A	c.(1750-1752)CAG>CAA	p.Q584Q	ARHGEF16_uc001aki.2_Silent_p.Q296Q|ARHGEF16_uc001akj.2_Silent_p.Q296Q|ARHGEF16_uc010nzh.1_Silent_p.Q288Q	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	584	PH.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		ACCCCTTCCAGGTGACCCTGC	0.672													34	60					0	0	1	0	0
MEGF6	1953	broad.mit.edu	37	1	3417829	3417829	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3417829G>A	uc001akl.2	-	19	2585	c.2358C>T	c.(2356-2358)TGC>TGT	p.C786C	MEGF6_uc001akk.2_Silent_p.C681C	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	786	EGF-like 13.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		GGCATGCTGGGCAGATCTCCT	0.677													10	17					0	0	1	0	0
MEGF6	1953	broad.mit.edu	37	1	3424448	3424448	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3424448G>A	uc001akl.2	-	14	1927	c.1700C>T	c.(1699-1701)TCC>TTC	p.S567F	MEGF6_uc001akk.2_Missense_Mutation_p.S462F	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	567	EGF-like 10.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		ACAGCTGCAGGAGAAGCTGCA	0.602													21	54					0	0	1	0	0
MEGF6	1953	broad.mit.edu	37	1	3428168	3428168	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3428168G>A	uc001akl.2	-	9	1287	c.1060C>T	c.(1060-1062)CTG>TTG	p.L354L	MEGF6_uc001akk.2_Silent_p.L249L	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	354	EGF-like 6.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		CATGTGCACAGGGGCCCAGCA	0.642													22	63					0	0	1	0	0
MEGF6	1953	broad.mit.edu	37	1	3440797	3440797	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3440797G>A	uc001akl.2	-	5	722	c.495C>T	c.(493-495)TGC>TGT	p.C165C	MEGF6_uc001akk.2_Silent_p.C60C	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	165	EGF-like 2; calcium-binding (Potential).					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		TGTGGGTTCGGCATTCGTCCA	0.647													18	49					0	0	1	0	0
MEGF6	1953	broad.mit.edu	37	1	3511920	3511920	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3511920C>T	uc001akl.2	-	3	585	c.358G>A	c.(358-360)GAG>AAG	p.E120K		NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	120	EMI.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		CAGCCCTCCTCGTCGGGCTGC	0.662													21	57					0	0	1	0	0
MEGF6	1953	broad.mit.edu	37	1	3511995	3511995	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3511995C>T	uc001akl.2	-	3	510	c.283G>A	c.(283-285)GGC>AGC	p.G95S		NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	95	EMI.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		TGCCTGTAGCCCATGTAGTAG	0.612													8	77					0	0	1	0	0
TP73	7161	broad.mit.edu	37	1	3638665	3638665	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3638665C>T	uc001akp.2	+	5	620	c.510C>T	c.(508-510)CCC>CCT	p.P170P	TP73_uc001akq.2_Silent_p.P170P|TP73_uc010nzj.1_Silent_p.P121P|TP73_uc001akr.2_Silent_p.P121P|TP73_uc009vlk.1_Silent_p.P121P|TP73_uc001aks.2_Silent_p.P121P|TP73_uc010nzk.1_Silent_p.P99P	NM_005427	NP_005418	O15350	P73_HUMAN	tumor protein p73 isoform a	170	DNA-binding (Potential).|Poly-Pro.				cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mismatch repair|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of JUN kinase activity|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|protein tetramerization|response to gamma radiation|response to X-ray	chromatin|cytosol|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|metal ion binding|p53 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|transcription repressor activity			ovary(1)|lung(1)	2	all_cancers(77;0.0395)|Ovarian(185;0.0634)|Lung NSC(156;0.188)|all_lung(157;0.198)	all_epithelial(116;7.42e-17)|all_lung(118;1.86e-06)|Lung NSC(185;0.000163)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.109)|Ovarian(437;0.127)		Epithelial(90;5.57e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.87e-22)|GBM - Glioblastoma multiforme(42;5.72e-16)|Colorectal(212;2.22e-05)|COAD - Colon adenocarcinoma(227;8.48e-05)|Kidney(185;0.000539)|BRCA - Breast invasive adenocarcinoma(365;0.000868)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.00751)|Lung(427;0.226)		CCCCGCCACCCCCAGGCACCG	0.617													24	79					0	0	1	0	0
TP73	7161	broad.mit.edu	37	1	3638758	3638758	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3638758G>A	uc001akp.2	+	5	713	c.603G>A	c.(601-603)AGG>AGA	p.R201R	TP73_uc001akq.2_Silent_p.R201R|TP73_uc010nzj.1_Silent_p.R152R|TP73_uc001akr.2_Silent_p.R152R|TP73_uc009vlk.1_Silent_p.R152R|TP73_uc001aks.2_Silent_p.R152R|TP73_uc010nzk.1_Silent_p.R130R	NM_005427	NP_005418	O15350	P73_HUMAN	tumor protein p73 isoform a	201	DNA-binding (Potential).				cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mismatch repair|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of JUN kinase activity|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|protein tetramerization|response to gamma radiation|response to X-ray	chromatin|cytosol|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|metal ion binding|p53 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|transcription repressor activity			ovary(1)|lung(1)	2	all_cancers(77;0.0395)|Ovarian(185;0.0634)|Lung NSC(156;0.188)|all_lung(157;0.198)	all_epithelial(116;7.42e-17)|all_lung(118;1.86e-06)|Lung NSC(185;0.000163)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.109)|Ovarian(437;0.127)		Epithelial(90;5.57e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.87e-22)|GBM - Glioblastoma multiforme(42;5.72e-16)|Colorectal(212;2.22e-05)|COAD - Colon adenocarcinoma(227;8.48e-05)|Kidney(185;0.000539)|BRCA - Breast invasive adenocarcinoma(365;0.000868)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.00751)|Lung(427;0.226)		AGCTCGGGAGGGACTTCAACG	0.662													13	29					0	0	1	0	0
CCDC27	148870	broad.mit.edu	37	1	3672097	3672097	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3672097C>T	uc001akv.2	+	3	600	c.519C>T	c.(517-519)TTC>TTT	p.F173F		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	173										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		AGGACCTGTTCTTGGCCAGGC	0.617													102	226					0	0	1	0	0
CCDC27	148870	broad.mit.edu	37	1	3673354	3673354	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3673354G>A	uc001akv.2	+	4	692	c.611G>A	c.(610-612)AGA>AAA	p.R204K		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	204										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		CGGAAGAGGAGAAAATCCCAG	0.547													21	73					0	0	1	0	0
CCDC27	148870	broad.mit.edu	37	1	3679786	3679786	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3679786G>A	uc001akv.2	+	7	1150	c.1069G>A	c.(1069-1071)GGA>AGA	p.G357R		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	357	Glu-rich.									skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		GGGTGCCTGGGGAGGTGTGAG	0.453													5	5					0	0	1	0	0
CCDC27	148870	broad.mit.edu	37	1	3679789	3679789	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3679789G>A	uc001akv.2	+	7	1153	c.1072G>A	c.(1072-1074)GGT>AGT	p.G358S		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	358	Glu-rich.									skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		TGCCTGGGGAGGTGTGAGCCA	0.443													5	5					0	0	1	0	0
LRRC47	57470	broad.mit.edu	37	1	3703511	3703511	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3703511G>A	uc001akx.1	-	2	1007	c.979C>T	c.(979-981)CCC>TCC	p.P327S		NM_020710	NP_065761	Q8N1G4	LRC47_HUMAN	leucine rich repeat containing 47	327					translation		phenylalanine-tRNA ligase activity|RNA binding			large_intestine(1)|ovary(1)	2	all_cancers(77;0.0375)|Ovarian(185;0.0634)|all_lung(157;0.208)|Lung NSC(156;0.21)	all_epithelial(116;1.34e-16)|all_lung(118;2.53e-06)|Lung NSC(185;0.00028)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.0743)|Ovarian(437;0.127)		Epithelial(90;5.49e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.43e-22)|GBM - Glioblastoma multiforme(42;3.69e-16)|Colorectal(212;1.21e-05)|COAD - Colon adenocarcinoma(227;5.87e-05)|Kidney(185;0.000367)|BRCA - Breast invasive adenocarcinoma(365;0.000704)|KIRC - Kidney renal clear cell carcinoma(229;0.00567)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.124)		CGGACCTCGGGGCTCACTCTG	0.552													4	12					0	0	1	0	0
KIAA0562	9731	broad.mit.edu	37	1	3746449	3746449	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3746449G>A	uc001aky.2	-	14	2308	c.1949C>T	c.(1948-1950)CCA>CTA	p.P650L	KIAA0562_uc010nzm.1_RNA	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,	650						centriole	binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		GCTGTCGTCTGGAGGAAGGTA	0.488													22	171					0	0	1	0	0
KIAA0562	9731	broad.mit.edu	37	1	3753941	3753941	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:3753941G>A	uc001aky.2	-	9	1393	c.1034C>T	c.(1033-1035)CCT>CTT	p.P345L	KIAA0562_uc010nzm.1_RNA|KIAA0562_uc001akz.2_Missense_Mutation_p.P345L	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,	345						centriole	binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		ATATGATGAAGGCTTTTCCTG	0.448													18	42					0	0	1	0	0
AJAP1	55966	broad.mit.edu	37	1	4772291	4772291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:4772291C>T	uc001alm.1	+	2	742	c.361C>T	c.(361-363)CCA>TCA	p.P121S	AJAP1_uc001aln.2_Missense_Mutation_p.P121S	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	121	Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		GGCCAAGCCCCCAGCTGCTGC	0.726													5	9					0	0	1	0	0
AJAP1	55966	broad.mit.edu	37	1	4772551	4772551	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:4772551C>T	uc001alm.1	+	2	1002	c.621C>T	c.(619-621)TCC>TCT	p.S207S	AJAP1_uc001aln.2_Silent_p.S207S	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	207	Thr-rich.|Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CCACGGTCTCCATCCTACAAA	0.502													8	21					0	0	1	0	0
AJAP1	55966	broad.mit.edu	37	1	4832520	4832520	+	Silent	SNP	C	T	T	rs151154079		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:4832520C>T	uc001alm.1	+	4	1479	c.1098C>T	c.(1096-1098)CCC>CCT	p.P366P	AJAP1_uc001aln.2_Silent_p.P366P	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	366	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CATCTGTGCCCGTGTACACCG	0.592													15	28					0	0	1	0	0
AJAP1	55966	broad.mit.edu	37	1	4832579	4832579	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:4832579G>A	uc001alm.1	+	4	1538	c.1157G>A	c.(1156-1158)GGA>GAA	p.G386E	AJAP1_uc001aln.2_Missense_Mutation_p.G386E	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	386	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		ACATTTAATGGAAACCGGTAA	0.602													13	25					0	0	1	0	0
AJAP1	55966	broad.mit.edu	37	1	4834515	4834515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:4834515C>T	uc001alm.1	+	5	1573	c.1192C>T	c.(1192-1194)CCT>TCT	p.P398S	AJAP1_uc001aln.2_Missense_Mutation_p.P398S	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	398	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		GCATCTTATTCCTGTGGCCTT	0.532													12	117					0	0	1	0	0
NPHP4	261734	broad.mit.edu	37	1	5947473	5947473	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:5947473G>A	uc001alq.1	-	18	2624	c.2358C>T	c.(2356-2358)GTC>GTT	p.V786V	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_RNA|NPHP4_uc001alt.1_RNA|NPHP4_uc009vlu.1_RNA	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	786					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		CAGTTGCCACGACCTCAAGCT	0.642													16	47					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6166483	6166483	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6166483G>A	uc001amb.1	-	40	5929	c.5829C>T	c.(5827-5829)AAC>AAT	p.N1943N	CHD5_uc001alz.1_Intron|CHD5_uc001ama.1_Intron	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1943					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GGGGCATCTGGTTGTAGTTGA	0.672													5	7					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6184141	6184141	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6184141C>T	uc001amb.1	-	31	4666	c.4566G>A	c.(4564-4566)GGG>GGA	p.G1522G	CHD5_uc001alz.1_Silent_p.G379G|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1522					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TGCTGTACTTCCCGTTGACAT	0.502													8	21					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6189094	6189094	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6189094C>T	uc001amb.1	-	23	3523	c.3423G>A	c.(3421-3423)AAG>AAA	p.K1141K	CHD5_uc001alz.1_5'UTR|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1141	Helicase C-terminal.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TCATCACCTTCTTGTTCTGGC	0.647													24	36					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6203924	6203924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6203924C>T	uc001amb.1	-	13	2102	c.2002G>A	c.(2002-2004)GAC>AAC	p.D668N	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	668					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TGCTTGTCGTCCCTCAGCTTC	0.642													37	82					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6206765	6206765	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6206765C>T	uc001amb.1	-	10	1650	c.1550G>A	c.(1549-1551)GGG>GAG	p.G517E	CHD5_uc001ama.1_5'Flank|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	517	Chromo 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GTAGGACAGCCCTGCCCACTT	0.652													10	42					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6228308	6228309	+	Missense_Mutation	DNP	CG	TA	TA	rs146996909	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6228308_6228309CG>TA	uc001amb.1	-	2	208_209	c.108_109CG>TA	c.(106-111)TTCGAT>TTTAAT	p.D37N		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	37					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		AAAAAGTCATCGAAGGCTTCAA	0.495													77	198					0	0	1	0	0
ACOT7	11332	broad.mit.edu	37	1	6445578	6445578	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6445578G>A	uc001ams.2	-	1	306	c.149C>T	c.(148-150)CCC>CTC	p.P50L	ACOT7_uc010nzq.1_Intron|ACOT7_uc001amt.2_Intron|ACOT7_uc001amu.2_Intron|ACOT7_uc001amv.2_Intron	NM_181864	NP_863654	O00154	BACH_HUMAN	acyl-CoA thioesterase 7 isoform hBACHb	50						mitochondrion|nucleus	carboxylesterase activity|fatty-acyl-CoA binding|palmitoyl-CoA hydrolase activity				0	Ovarian(185;0.0634)|all_lung(157;0.175)	all_cancers(23;1.42e-38)|all_epithelial(116;3.96e-23)|all_lung(118;3.69e-08)|Lung NSC(185;8.52e-07)|all_hematologic(16;6.92e-06)|Colorectal(325;4.53e-05)|Acute lymphoblastic leukemia(12;5e-05)|all_neural(13;0.000164)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;9.16e-37)|GBM - Glioblastoma multiforme(13;5.89e-29)|OV - Ovarian serous cystadenocarcinoma(86;7.63e-19)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;2.06e-05)|Kidney(185;7.74e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00129)|BRCA - Breast invasive adenocarcinoma(365;0.00132)|STAD - Stomach adenocarcinoma(132;0.00195)|READ - Rectum adenocarcinoma(331;0.0481)		GGCTCCACAGGGTGGGAGATC	0.652													47	156					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6488466	6488466	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6488466G>A	uc001amy.2	+	2	643	c.475G>A	c.(475-477)GAG>AAG	p.E159K		NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	159	ANK 5.				sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		GCTTCTCGTCGAGCACTACCC	0.642													23	51					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6501056	6501056	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6501056G>A	uc001amy.2	+	5	1089	c.921G>A	c.(919-921)ACG>ACA	p.T307T		NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	307					sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		ACGGGTACACGGCCGCCGACC	0.682													4	19					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6505811	6505811	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6505811A>T	uc001amy.2	+	7	1448	c.1280A>T	c.(1279-1281)AAG>ATG	p.K427M	ESPN_uc001amz.2_5'Flank	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	427					sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		ACGATTGGGAAGcccacaccc	0.383													7	11					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6511792	6511792	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6511792G>A	uc001amy.2	+	9	2213	c.2045G>A	c.(2044-2046)GGG>GAG	p.G682E	ESPN_uc001amz.2_Missense_Mutation_p.G116E	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	682	Pro-rich.				sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		TCAGGCATCGGGCAGCCGGCC	0.682													7	18					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6511995	6511995	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6511995C>T	uc001amy.2	+	10	2332	c.2164C>T	c.(2164-2166)CCC>TCC	p.P722S	ESPN_uc001amz.2_Missense_Mutation_p.P156S	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	722	Pro-rich.				sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		AAGCTTGGTTCCCGTGCCGCC	0.672													3	15					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6520073	6520073	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6520073G>A	uc001amy.2	+	13	2600	c.2432G>A	c.(2431-2433)CGA>CAA	p.R811Q	ESPN_uc001amz.2_Missense_Mutation_p.R245Q	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	811	Glu-rich.|Potential.				sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		GAGGAGGAGCGACAGAAGCAG	0.662													8	29					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6520098	6520098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6520098G>A	uc001amy.2	+	13	2625	c.2457G>A	c.(2455-2457)CGG>CGA	p.R819R	ESPN_uc001amz.2_Silent_p.R253R	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	819	Glu-rich.|Potential.				sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		AGCTGCGGCGGGAGAAGGAAC	0.637													14	29					0	0	1	0	0
TNFRSF25	8718	broad.mit.edu	37	1	6521698	6521698	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6521698G>A	uc001ane.2	-	10	1138	c.1050C>T	c.(1048-1050)TTC>TTT	p.F350F	TNFRSF25_uc001ana.2_Silent_p.F167F|TNFRSF25_uc001anb.2_RNA|TNFRSF25_uc001anc.2_RNA|TNFRSF25_uc001and.2_Silent_p.F123F|TNFRSF25_uc009vlz.2_RNA|TNFRSF25_uc001anf.2_Silent_p.F313F|TNFRSF25_uc001ang.2_Silent_p.F305F|TNFRSF25_uc001anh.2_Silent_p.F359F	NM_003790	NP_003781	Q93038	TNR25_HUMAN	tumor necrosis factor receptor superfamily,	350	Death.|Cytoplasmic (Potential).				apoptosis|induction of apoptosis by extracellular signals	cytosol|extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity			central_nervous_system(2)|breast(1)	3	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Acute lymphoblastic leukemia(12;0.00157)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;4.58e-35)|GBM - Glioblastoma multiforme(13;3.06e-27)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|BRCA - Breast invasive adenocarcinoma(365;0.00105)|STAD - Stomach adenocarcinoma(132;0.00158)|READ - Rectum adenocarcinoma(331;0.0419)		GCGTGCGCACGAACTCCTTCC	0.697													7	21					0	0	1	0	0
TNFRSF25	8718	broad.mit.edu	37	1	6522131	6522131	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6522131G>A	uc001ane.2	-	9	936	c.848C>T	c.(847-849)CCT>CTT	p.P283L	TNFRSF25_uc001ana.2_Missense_Mutation_p.P100L|TNFRSF25_uc001anb.2_RNA|TNFRSF25_uc001anc.2_RNA|TNFRSF25_uc001and.2_Missense_Mutation_p.P56L|TNFRSF25_uc009vlz.2_RNA|TNFRSF25_uc001anf.2_Missense_Mutation_p.P246L|TNFRSF25_uc001ang.2_Missense_Mutation_p.P238L|TNFRSF25_uc001anh.2_Missense_Mutation_p.P292L	NM_003790	NP_003781	Q93038	TNR25_HUMAN	tumor necrosis factor receptor superfamily,	283	Cytoplasmic (Potential).				apoptosis|induction of apoptosis by extracellular signals	cytosol|extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity			central_nervous_system(2)|breast(1)	3	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Acute lymphoblastic leukemia(12;0.00157)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;4.58e-35)|GBM - Glioblastoma multiforme(13;3.06e-27)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|BRCA - Breast invasive adenocarcinoma(365;0.00105)|STAD - Stomach adenocarcinoma(132;0.00158)|READ - Rectum adenocarcinoma(331;0.0419)		GGGGTAGCCAGGGGTCCAGCT	0.617													22	78					0	0	1	0	0
TNFRSF25	8718	broad.mit.edu	37	1	6525594	6525594	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6525594G>A	uc001ane.2	-	2	154	c.66C>T	c.(64-66)GCC>GCT	p.A22A	TNFRSF25_uc001ana.2_Silent_p.A22A|TNFRSF25_uc001anb.2_RNA|TNFRSF25_uc001anc.2_RNA|TNFRSF25_uc001and.2_5'UTR|TNFRSF25_uc009vlz.2_RNA|TNFRSF25_uc001anf.2_Silent_p.A22A|TNFRSF25_uc001ang.2_Silent_p.A22A|TNFRSF25_uc001anh.2_Silent_p.A22A|TNFRSF25_uc001ani.1_Silent_p.A22A	NM_003790	NP_003781	Q93038	TNR25_HUMAN	tumor necrosis factor receptor superfamily,	22					apoptosis|induction of apoptosis by extracellular signals	cytosol|extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity			central_nervous_system(2)|breast(1)	3	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Acute lymphoblastic leukemia(12;0.00157)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;4.58e-35)|GBM - Glioblastoma multiforme(13;3.06e-27)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|BRCA - Breast invasive adenocarcinoma(365;0.00105)|STAD - Stomach adenocarcinoma(132;0.00158)|READ - Rectum adenocarcinoma(331;0.0419)		CCTGGGCCCGGGCCCCCAGCA	0.652													14	23					0	0	1	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6529206	6529206	+	Silent	SNP	C	T	T	rs79066520		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6529206C>T	uc001ano.1	-	20	2414	c.2313G>A	c.(2311-2313)GAG>GAA	p.E771E	PLEKHG5_uc001ann.1_Silent_p.E752E|PLEKHG5_uc001anq.1_Silent_p.E792E|PLEKHG5_uc001anp.1_Silent_p.E792E|TNFRSF25_uc001ana.2_5'Flank|TNFRSF25_uc001anb.2_5'Flank|TNFRSF25_uc001anc.2_5'Flank|TNFRSF25_uc001and.2_5'Flank|TNFRSF25_uc009vlz.2_5'Flank|TNFRSF25_uc001ane.2_5'Flank|TNFRSF25_uc001anf.2_5'Flank|TNFRSF25_uc001ang.2_5'Flank|TNFRSF25_uc001anh.2_5'Flank|TNFRSF25_uc001ani.1_5'Flank|PLEKHG5_uc001anj.1_Silent_p.E276E|PLEKHG5_uc009vma.1_Silent_p.E555E|PLEKHG5_uc010nzr.1_Silent_p.E784E|PLEKHG5_uc001ank.1_Silent_p.E715E|PLEKHG5_uc009vmb.1_Silent_p.E715E|PLEKHG5_uc001anl.1_Silent_p.E715E|PLEKHG5_uc001anm.1_Silent_p.E715E|PLEKHG5_uc001anr.1_5'UTR	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	771	Glu-rich.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		cctcctcctcctcttcctcct	0.433													17	72					0	0	1	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6533066	6533066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6533066C>T	uc001ano.1	-	10	1233	c.1132G>A	c.(1132-1134)GAG>AAG	p.E378K	PLEKHG5_uc001ann.1_Missense_Mutation_p.E359K|PLEKHG5_uc001anq.1_Missense_Mutation_p.E399K|PLEKHG5_uc001anp.1_Missense_Mutation_p.E399K|PLEKHG5_uc001anj.1_5'Flank|PLEKHG5_uc009vma.1_Missense_Mutation_p.E162K|PLEKHG5_uc010nzr.1_Missense_Mutation_p.E391K|PLEKHG5_uc001ank.1_Missense_Mutation_p.E322K|PLEKHG5_uc009vmb.1_Missense_Mutation_p.E322K|PLEKHG5_uc001anl.1_Missense_Mutation_p.E322K|PLEKHG5_uc001anm.1_Missense_Mutation_p.E322K	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	378					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		TCAATGAGCTCCCGCCAGCTG	0.627													13	48					0	0	1	0	0
NOL9	79707	broad.mit.edu	37	1	6610651	6610651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6610651G>A	uc001ans.2	-	2	440	c.421C>T	c.(421-423)CGT>TGT	p.R141C	NOL9_uc010nzs.1_RNA	NM_024654	NP_078930	Q5SY16	NOL9_HUMAN	nucleolar protein 9	141					maturation of 5.8S rRNA	nucleolus	ATP binding|polynucleotide 5'-hydroxyl-kinase activity|RNA binding			skin(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;2.46e-35)|all_epithelial(116;1.41e-22)|all_lung(118;7.59e-07)|Lung NSC(185;4.28e-06)|Colorectal(325;4.52e-05)|Breast(487;0.000353)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.47e-07)|COAD - Colon adenocarcinoma(227;1.47e-05)|Kidney(185;5.27e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|BRCA - Breast invasive adenocarcinoma(365;0.00113)|STAD - Stomach adenocarcinoma(132;0.0017)|READ - Rectum adenocarcinoma(331;0.0649)		CAAGTCACACGACAGATCCCA	0.408													21	58					0	0	1	0	0
TAS1R1	80835	broad.mit.edu	37	1	6634900	6634900	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6634900G>A	uc001ant.2	+	3	708	c.708G>A	c.(706-708)GGG>GGA	p.G236G	TAS1R1_uc001anu.2_Intron|TAS1R1_uc001anv.2_Intron|TAS1R1_uc001anw.2_Silent_p.G236G	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	236	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		CTGGTCAGGGGATCTGCATTG	0.622													34	55					0	0	1	0	0
TAS1R1	80835	broad.mit.edu	37	1	6639129	6639129	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6639129C>T	uc001ant.2	+	6	2011	c.2011C>T	c.(2011-2013)CAC>TAC	p.H671Y	TAS1R1_uc001anu.2_Missense_Mutation_p.H417Y|TAS1R1_uc001anv.2_Intron|TAS1R1_uc001anw.2_3'UTR|ZBTB48_uc009vmc.1_5'Flank|ZBTB48_uc001anx.2_5'Flank|ZBTB48_uc009vmd.1_5'Flank	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	671	Cytoplasmic (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		TACATTCTACCACGCCTGGGT	0.517													23	112					0	0	1	0	0
PHF13	148479	broad.mit.edu	37	1	6681627	6681627	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6681627G>A	uc001aob.3	+	4	1204	c.833G>A	c.(832-834)CGG>CAG	p.R278Q		NM_153812	NP_722519	Q86YI8	PHF13_HUMAN	PHD finger protein 13	278	PHD-type.				cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		CAAAAGTGCCGGGACTCCAAG	0.577													19	61					0	0	1	0	0
DNAJC11	55735	broad.mit.edu	37	1	6741093	6741093	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:6741093G>A	uc001aof.2	-	2	183	c.77C>T	c.(76-78)TCT>TTT	p.S26F	DNAJC11_uc010nzt.1_5'UTR|DNAJC11_uc001aog.2_Missense_Mutation_p.S26F|DNAJC11_uc010nzu.1_5'UTR	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	26	J.				protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		CTCTTCAGAAGAGGCCTAAAG	0.453													10	90					0	0	1	0	0
CAMTA1	23261	broad.mit.edu	37	1	7151403	7151403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:7151403G>A	uc001aoi.2	+	4	481	c.274G>A	c.(274-276)GAA>AAA	p.E92K		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	92	CG-1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GAAACACGAAGAATGGCTAAC	0.353													27	57					0	0	1	0	0
CAMTA1	23261	broad.mit.edu	37	1	7723933	7723933	+	Silent	SNP	C	T	T	rs141193119		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:7723933C>T	uc001aoi.2	+	9	1533	c.1326C>T	c.(1324-1326)TTC>TTT	p.F442F		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	442					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GCCACAAGTTCGCCTTTCCCA	0.652													21	59					0	0	1	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724283	7724283	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:7724283C>T	uc001aoi.2	+	9	1883	c.1676C>T	c.(1675-1677)TCC>TTC	p.S559F		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	559					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GCAGCCAGCTCCCTCACCCTG	0.662													21	66					0	0	1	0	0
CAMTA1	23261	broad.mit.edu	37	1	7806009	7806009	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:7806009C>T	uc001aoi.2	+	18	4682	c.4475C>T	c.(4474-4476)GCC>GTC	p.A1492V	CAMTA1_uc001aok.3_Missense_Mutation_p.A535V|CAMTA1_uc001aoj.2_Missense_Mutation_p.A448V|CAMTA1_uc009vmf.2_Missense_Mutation_p.A82V	NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	1492					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CTTCCCTCCGCCGCGGATTGG	0.488													27	124					0	0	1	0	0
TNFRSF9	3604	broad.mit.edu	37	1	7995115	7995115	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:7995115C>T	uc001aot.2	-	6	630	c.502G>A	c.(502-504)GGA>AGA	p.G168R		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	168	Extracellular (Potential).				induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity			large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		GAGGATGCTCCCGGAGAGAGG	0.542													13	65					0	0	1	0	0
TNFRSF9	3604	broad.mit.edu	37	1	8000004	8000004	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8000004G>A	uc001aot.2	-	2	179	c.51C>T	c.(49-51)AAC>AAT	p.N17N		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	17					induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity			large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		TCCTCTCAAAGTTGAGGACCA	0.443													18	41					0	0	1	0	0
PARK7	11315	broad.mit.edu	37	1	8025434	8025434	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8025434C>T	uc001aou.3	+	3	246	c.141C>T	c.(139-141)AGC>AGT	p.S47S	PARK7_uc001aow.3_Silent_p.S47S|PARK7_uc001aox.3_Silent_p.S47S|PARK7_uc001aov.3_Silent_p.S47S	NM_001123377	NP_001116849	Q99497	PARK7_HUMAN	Parkinson disease protein 7	47					autophagy|cell death|cellular response to hydrogen peroxide|inflammatory response|mitochondrion organization|negative regulation of cell death|negative regulation of protein binding|neuroprotection|protein stabilization|regulation of androgen receptor signaling pathway|regulation of inflammatory response|single fertilization	mitochondrion|nucleus	mRNA binding|peptidase activity|peroxidase activity|protein homodimerization activity				0	Ovarian(185;0.06)|all_lung(157;0.151)	all_epithelial(116;1.76e-16)|all_lung(118;3.66e-05)|Lung NSC(185;0.000163)|Renal(390;0.000469)|Colorectal(325;0.0033)|Breast(348;0.0044)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;1.28e-70)|GBM - Glioblastoma multiforme(8;3.05e-36)|Colorectal(212;6.83e-08)|COAD - Colon adenocarcinoma(227;7.51e-06)|Kidney(185;5.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000414)|KIRC - Kidney renal clear cell carcinoma(229;0.000967)|STAD - Stomach adenocarcinoma(132;0.00102)|READ - Rectum adenocarcinoma(331;0.0649)		TACAGTGTAGCCGTGATGTGG	0.403													29	55					0	0	1	0	0
ERRFI1	54206	broad.mit.edu	37	1	8073739	8073739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8073739G>A	uc001aoz.2	-	4	1169	c.920C>T	c.(919-921)TCG>TTG	p.S307L	ERRFI1_uc001apa.1_Missense_Mutation_p.S232L	NM_018948	NP_061821	Q9UJM3	ERRFI_HUMAN	mitogen-inducible gene 6 protein	307					lung alveolus development|lung epithelium development|lung vasculature development|negative regulation of epidermal growth factor receptor activity|negative regulation of protein autophosphorylation|regulation of keratinocyte differentiation|response to stress|skin morphogenesis	cytoplasm|extrinsic to internal side of plasma membrane|nucleus	protein kinase binding|Rho GTPase activator activity			ovary(1)	1	Ovarian(185;0.06)|all_lung(157;0.151)	all_epithelial(116;1.76e-16)|all_lung(118;3.66e-05)|Lung NSC(185;0.000163)|Renal(390;0.000469)|Colorectal(325;0.0033)|Breast(348;0.0044)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.33e-70)|GBM - Glioblastoma multiforme(8;8.05e-37)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;6.9e-06)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		ATAGGTGCTCGAAGTAACTTC	0.507													58	137					0	0	1	0	0
ERRFI1	54206	broad.mit.edu	37	1	8073809	8073809	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8073809G>T	uc001aoz.2	-	4	1099	c.850C>A	c.(850-852)CCC>ACC	p.P284T	ERRFI1_uc001apa.1_Missense_Mutation_p.P209T	NM_018948	NP_061821	Q9UJM3	ERRFI_HUMAN	mitogen-inducible gene 6 protein	284					lung alveolus development|lung epithelium development|lung vasculature development|negative regulation of epidermal growth factor receptor activity|negative regulation of protein autophosphorylation|regulation of keratinocyte differentiation|response to stress|skin morphogenesis	cytoplasm|extrinsic to internal side of plasma membrane|nucleus	protein kinase binding|Rho GTPase activator activity			ovary(1)	1	Ovarian(185;0.06)|all_lung(157;0.151)	all_epithelial(116;1.76e-16)|all_lung(118;3.66e-05)|Lung NSC(185;0.000163)|Renal(390;0.000469)|Colorectal(325;0.0033)|Breast(348;0.0044)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.33e-70)|GBM - Glioblastoma multiforme(8;8.05e-37)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;6.9e-06)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		ACTCTGGGGGGAACCTCAGGT	0.483													49	106					2.81731e-22	2.83314e-22	1	1	0
SLC45A1	50651	broad.mit.edu	37	1	8390352	8390352	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8390352C>T	uc001apb.2	+	4	799	c.799C>T	c.(799-801)CGA>TGA	p.R267*	SLC45A1_uc001apc.2_5'UTR	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	267					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GGGACAGCTCCGAGTCATTTA	0.637													39	119					0	0	1	0	0
SLC45A1	50651	broad.mit.edu	37	1	8390532	8390532	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8390532C>T	uc001apb.2	+	4	979	c.979C>T	c.(979-981)CCG>TCG	p.P327S	SLC45A1_uc001apc.2_Missense_Mutation_p.P25S	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	327					carbohydrate transport	integral to membrane	symporter activity	p.P327P(1)		central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CGACAGCCTCCCGTCGCACAC	0.711													10	42					0	0	1	0	0
SLC45A1	50651	broad.mit.edu	37	1	8399573	8399573	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8399573G>A	uc001apb.2	+	7	1795	c.1795G>A	c.(1795-1797)GAG>AAG	p.E599K	SLC45A1_uc001apc.2_Missense_Mutation_p.E297K	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	599					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GAAGCTGGAGGAGTTCCTCAG	0.652													20	72					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8418518	8418518	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8418518G>A	uc001ape.2	-	21	4887	c.4077C>T	c.(4075-4077)GCC>GCT	p.A1359A	RERE_uc001apf.2_Silent_p.A1359A|RERE_uc001apd.2_Silent_p.A805A	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1359					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GGTGGGGCCCGGCGGTCGGGG	0.701													4	15					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8418949	8418949	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8418949G>A	uc001ape.2	-	21	4456	c.3646C>T	c.(3646-3648)CGC>TGC	p.R1216C	RERE_uc001apf.2_Missense_Mutation_p.R1216C|RERE_uc001apd.2_Missense_Mutation_p.R662C	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1216					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.R1216C(1)		ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		TCACTGAGGCGACCTTCATGC	0.642													52	69					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8420714	8420714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8420714G>A	uc001ape.2	-	19	3663	c.2853C>T	c.(2851-2853)CTC>CTT	p.L951L	RERE_uc001apf.2_Silent_p.L951L|RERE_uc010nzx.1_Silent_p.L683L|RERE_uc001apd.2_Silent_p.L397L	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	951	Pro-rich.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		AGGGCCCCGAGAGGTGGGGAG	0.692													18	51					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8421909	8421909	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8421909G>A	uc001ape.2	-	18	2740	c.1930C>T	c.(1930-1932)CTT>TTT	p.L644F	RERE_uc001apf.2_Missense_Mutation_p.L644F|RERE_uc010nzx.1_Missense_Mutation_p.L376F|RERE_uc001apd.2_Missense_Mutation_p.L90F	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	644					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		TTACTCTTAAGAGGGGAAGAG	0.552													25	51					0	0	1	0	0
ENO1	2023	broad.mit.edu	37	1	8924024	8924025	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:8924024_8924025GG>AT	uc001apj.1	-	9	1143_1144	c.992_993CC>AT	c.(991-993)GCC>GAT	p.A331D	ENO1_uc001api.1_Missense_Mutation_p.A235D|ENO1_uc001apk.1_Missense_Mutation_p.A276D|ENO1_uc001apl.1_Missense_Mutation_p.A331D|ENO1_uc009vmi.1_Missense_Mutation_p.A288D|ENO1_uc009vmj.1_Missense_Mutation_p.A331D|ENO1_uc009vmk.1_Missense_Mutation_p.A205D|ENO1_uc009vml.1_Missense_Mutation_p.A331D	NM_001428	NP_001419	P06733	ENOA_HUMAN	enolase 1	331					gluconeogenesis|glycolysis|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|response to virus	phosphopyruvate hydratase complex|plasma membrane|sarcomere	DNA binding|magnesium ion binding|phosphopyruvate hydratase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|kidney(1)|central_nervous_system(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;2.54e-20)|all_lung(118;2.99e-06)|Lung NSC(185;6.25e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.42e-07)|COAD - Colon adenocarcinoma(227;2.78e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		TCTCGTTCACGGCCTTGGCGAT	0.564													79	212					0	0	1	0	0
CA6	765	broad.mit.edu	37	1	9009324	9009324	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9009324G>A	uc001apm.2	+	2	106	c.82G>A	c.(82-84)GGG>AGG	p.G28R	CA6_uc009vmn.2_Intron	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	28					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding			ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		TGTCTTAGAAGGGGCACTGGA	0.642													7	32					0	0	1	0	0
CA6	765	broad.mit.edu	37	1	9027799	9027799	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9027799C>T	uc001apm.2	+	6	677	c.653C>T	c.(652-654)TCA>TTA	p.S218L	CA6_uc009vmn.2_Missense_Mutation_p.S158L	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	218					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding			ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		TACCATGGCTCACTCACCACG	0.527													32	70					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9098032	9098032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9098032G>A	uc001apo.2	-	11	1518	c.1226C>T	c.(1225-1227)CCA>CTA	p.P409L	SLC2A5_uc010nzy.1_Missense_Mutation_p.P350L|SLC2A5_uc010nzz.1_Missense_Mutation_p.P294L|SLC2A5_uc010oaa.1_Missense_Mutation_p.P365L|SLC2A5_uc010oab.1_Missense_Mutation_p.P409L	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	409	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GAAGGCAGATGGCCGAGAGGA	0.647													10	24					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9098546	9098546	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9098546G>A	uc001apo.2	-	10	1410	c.1118C>T	c.(1117-1119)CCA>CTA	p.P373L	SLC2A5_uc010nzy.1_Missense_Mutation_p.P314L|SLC2A5_uc010nzz.1_Missense_Mutation_p.P258L|SLC2A5_uc010oaa.1_Missense_Mutation_p.P329L|SLC2A5_uc010oab.1_Missense_Mutation_p.P373L	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	373	Helical; Name=10; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GCTGATGTATGGCATCCAGGA	0.607													10	17					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9100123	9100123	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9100123C>T	uc001apo.2	-	6	989	c.697G>A	c.(697-699)GCC>ACC	p.A233T	SLC2A5_uc010nzy.1_Missense_Mutation_p.A174T|SLC2A5_uc010nzz.1_Missense_Mutation_p.A118T|SLC2A5_uc010oaa.1_Missense_Mutation_p.A189T|SLC2A5_uc010oab.1_Missense_Mutation_p.A233T	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	233	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTCGTTACCTTTCTTGGCG	0.687													8	26					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9100181	9100181	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9100181G>A	uc001apo.2	-	6	931	c.639C>T	c.(637-639)TTC>TTT	p.F213F	SLC2A5_uc010nzy.1_Silent_p.F154F|SLC2A5_uc010nzz.1_Silent_p.F98F|SLC2A5_uc010oaa.1_Silent_p.F169F|SLC2A5_uc010oab.1_Silent_p.F213F	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	213	Helical; Name=6; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GGCTCTCGGGGAAGAAGGGCA	0.682													3	8					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9117527	9117527	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9117527G>A	uc001apo.2	-	3	565	c.273C>T	c.(271-273)CCC>CCT	p.P91P	SLC2A5_uc010nzz.1_Intron|SLC2A5_uc010oaa.1_Silent_p.P47P|SLC2A5_uc010oab.1_Silent_p.P91P|SLC2A5_uc010oac.1_Silent_p.P91P|SLC2A5_uc001app.3_Silent_p.P91P	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	91	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TATTCACCAAGGGGCCGACCA	0.473													19	33					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9118220	9118220	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9118220G>A	uc001apo.2	-	2	415	c.123C>T	c.(121-123)TCC>TCT	p.S41S	SLC2A5_uc010nzz.1_Intron|SLC2A5_uc010oaa.1_Missense_Mutation_p.P10L|SLC2A5_uc010oab.1_Silent_p.S41S|SLC2A5_uc010oac.1_Silent_p.S41S|SLC2A5_uc001app.3_Silent_p.S41S	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	41	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CCAGTGCTGGGGAGTTGACAG	0.597													21	31					0	0	1	0	0
SPSB1	80176	broad.mit.edu	37	1	9416153	9416153	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9416153A>G	uc010oae.1	+	2	542	c.203A>G	c.(202-204)AAG>AGG	p.K68R	SPSB1_uc001apv.2_Missense_Mutation_p.K68R	NM_025106	NP_079382	Q96BD6	SPSB1_HUMAN	splA/ryanodine receptor domain and SOCS box	68	B30.2/SPRY.				intracellular signal transduction	cytoplasm					0	all_lung(157;0.194)	all_epithelial(116;4.38e-15)|all_lung(118;0.000156)|Lung NSC(185;0.000446)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.72e-07)|COAD - Colon adenocarcinoma(227;9.12e-05)|Kidney(185;0.000296)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00193)|BRCA - Breast invasive adenocarcinoma(304;0.00202)|READ - Rectum adenocarcinoma(331;0.0419)		GTCTTTGTGAAGGAGGACGAC	0.577													51	165					0	0	1	0	0
TMEM201	199953	broad.mit.edu	37	1	9661297	9661297	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9661297C>T	uc001apz.2	+	5	753	c.741C>T	c.(739-741)CCC>CCT	p.P247P	TMEM201_uc001apy.2_Silent_p.P247P	NM_001130924	NP_001124396	Q5SNT2	TM201_HUMAN	transmembrane protein 201 isoform 1	247						integral to membrane|nuclear inner membrane					0	all_lung(157;0.222)	all_epithelial(116;2.09e-14)|Renal(390;0.000469)|all_lung(118;0.000521)|Lung NSC(185;0.000744)|Colorectal(325;0.0062)|Breast(348;0.0157)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.5e-08)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|STAD - Stomach adenocarcinoma(132;0.00345)|READ - Rectum adenocarcinoma(331;0.0419)		CCACTGTGCCCCTGGCCCTGC	0.692													8	91					0	0	1	0	0
C1orf200	644997	broad.mit.edu	37	1	9714487	9714487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9714487G>A	uc001aqc.3	-	1	158	c.8C>T	c.(7-9)TCC>TTC	p.S3F	PIK3CD_uc001aqa.2_Intron|PIK3CD_uc001aqb.3_Intron	NR_027045				RecName: Full=Putative uncharacterized protein C1orf200;												0	all_lung(157;0.222)	Renal(390;0.000469)|all_lung(118;0.000521)|Lung NSC(185;0.000744)|Colorectal(325;0.0062)|Breast(348;0.0157)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.86e-08)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(185;0.000231)|KIRC - Kidney renal clear cell carcinoma(229;0.000879)|BRCA - Breast invasive adenocarcinoma(304;0.00178)|STAD - Stomach adenocarcinoma(132;0.00331)|READ - Rectum adenocarcinoma(331;0.0419)		GGCAGACTGGGAGGGCATCAG	0.577													23	50					0	0	1	0	0
CLSTN1	22883	broad.mit.edu	37	1	9795569	9795569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:9795569G>A	uc001aqh.2	-	13	2598	c.1839C>T	c.(1837-1839)TTC>TTT	p.F613F	CLSTN1_uc001aqi.2_Silent_p.F603F|CLSTN1_uc010oag.1_Silent_p.F594F|CLSTN1_uc001aqf.2_5'Flank	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	613	Extracellular (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		CGGGCGTGGGGAACTGCCGGG	0.507													44	155					0	0	1	0	0
NMNAT1	64802	broad.mit.edu	37	1	10042714	10042714	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:10042714C>T	uc001aqp.2	+	5	939	c.795C>T	c.(793-795)GTC>GTT	p.V265V		NM_022787	NP_073624	Q9HAN9	NMNA1_HUMAN	nicotinamide mononucleotide adenylyltransferase	265					water-soluble vitamin metabolic process	nucleoplasm	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity|protein binding				0		all_lung(284;0.000407)|Renal(390;0.000469)|Lung NSC(185;0.000577)|Colorectal(325;0.0062)|Breast(348;0.00686)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.31e-08)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(185;0.00028)|BRCA - Breast invasive adenocarcinoma(304;0.00032)|KIRC - Kidney renal clear cell carcinoma(229;0.00101)|STAD - Stomach adenocarcinoma(132;0.00908)|READ - Rectum adenocarcinoma(331;0.0419)		ATGCTGGGGTCATCCTGGCCC	0.453													23	37					0	0	1	0	0
UBE4B	10277	broad.mit.edu	37	1	10155574	10155574	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:10155574C>T	uc001aqs.3	+	3	980	c.267C>T	c.(265-267)CCC>CCT	p.P89P	UBE4B_uc001aqr.3_Silent_p.P89P|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_5'UTR	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	89					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		GCAGCTCGCCCTCTAATAGCC	0.468													8	101					0	0	1	0	0
UBE4B	10277	broad.mit.edu	37	1	10228227	10228227	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:10228227C>T	uc001aqs.3	+	24	3945	c.3232C>T	c.(3232-3234)CAG>TAG	p.Q1078*	UBE4B_uc001aqr.3_Nonsense_Mutation_p.Q949*|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Nonsense_Mutation_p.Q533*|UBE4B_uc001aqu.2_5'Flank	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	1078					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		TCAGCTTGCTCAGGATGAGCG	0.587													12	37					0	0	1	0	0
UBE4B	10277	broad.mit.edu	37	1	10231363	10231363	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:10231363C>T	uc001aqs.3	+	25	4214	c.3501C>T	c.(3499-3501)TTC>TTT	p.F1167F	UBE4B_uc001aqr.3_Silent_p.F1038F|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Silent_p.F622F|UBE4B_uc001aqu.2_Silent_p.F48F	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	1167					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		GTGCTCGGTTCGCGAAAGCCA	0.478													52	115					0	0	1	0	0
PGD	5226	broad.mit.edu	37	1	10477453	10477453	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:10477453C>T	uc001arc.2	+	10	1086	c.996C>T	c.(994-996)ATC>ATT	p.I332I	PGD_uc001ard.2_Silent_p.I252I|PGD_uc010oak.1_Silent_p.I310I|PGD_uc010oal.1_Silent_p.I319I	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	332					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		CTTCCAAGATCATCTCTTACG	0.507													71	188					0	0	1	0	0
PGD	5226	broad.mit.edu	37	1	10479767	10479767	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:10479767C>T	uc001arc.2	+	13	1503	c.1413C>T	c.(1411-1413)GGC>GGT	p.G471G	PGD_uc001ard.2_Silent_p.G391G|PGD_uc010oak.1_Silent_p.G449G|PGD_uc010oal.1_Silent_p.G458G	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	471					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		ACTGGACAGGCCATGGTGGCA	0.547													16	117					0	0	1	0	0
PEX14	5195	broad.mit.edu	37	1	10689751	10689751	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:10689751C>T	uc001arn.2	+	9	862	c.841C>T	c.(841-843)CAC>TAC	p.H281Y	PEX14_uc009vmv.2_Missense_Mutation_p.H217Y|PEX14_uc010oam.1_Missense_Mutation_p.H217Y|PEX14_uc010oan.1_Missense_Mutation_p.H238Y|PEX14_uc009vmw.2_Missense_Mutation_p.H217Y	NM_004565	NP_004556	O75381	PEX14_HUMAN	peroxisomal biogenesis factor 14	281					negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|protein homooligomerization|protein import into peroxisome matrix|transmembrane transport	integral to membrane|nucleus|peroxisomal membrane|protein complex	protein N-terminus binding|transcription corepressor activity			breast(1)	1	Ovarian(185;0.203)	all_lung(284;6.02e-06)|Lung NSC(185;9.62e-06)|Renal(390;0.000147)|Breast(348;0.000932)|Colorectal(325;0.00215)|Hepatocellular(190;0.00913)|Ovarian(437;0.023)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0292)|Colorectal(212;9.13e-08)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000482)|Kidney(185;0.00174)|KIRC - Kidney renal clear cell carcinoma(229;0.00457)|STAD - Stomach adenocarcinoma(132;0.0249)|READ - Rectum adenocarcinoma(331;0.0419)		GAAGGAGGGCCACAGCCCCGA	0.677													7	16					0	0	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10713796	10713796	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:10713796G>A	uc001aro.2	-	11	2638	c.2318C>T	c.(2317-2319)TCG>TTG	p.S773L	CASZ1_uc001arp.1_Missense_Mutation_p.S773L|CASZ1_uc009vmx.2_Missense_Mutation_p.S797L	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	773					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CAGCAGCCCCGAGATCTTGCT	0.701													19	39					0	0	1	0	0
C1orf127	148345	broad.mit.edu	37	1	11007806	11007806	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11007806G>A	uc010oao.1	-	8	1944	c.1939C>T	c.(1939-1941)CCC>TCC	p.P647S	C1orf127_uc001arr.1_Missense_Mutation_p.P629S|C1orf127_uc001ars.1_Missense_Mutation_p.P621S	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	647										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		GCCAAGGTGGGCTCTGTCAGC	0.632													7	17					0	0	1	0	0
C1orf127	148345	broad.mit.edu	37	1	11008269	11008269	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11008269C>T	uc010oao.1	-	8	1481	c.1476G>A	c.(1474-1476)ATG>ATA	p.M492I	C1orf127_uc001arr.1_Missense_Mutation_p.M474I|C1orf127_uc001ars.1_Missense_Mutation_p.M466I	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	492										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		ATGAAAGGTCCATGTGCCCCC	0.647													8	92					0	0	1	0	0
C1orf127	148345	broad.mit.edu	37	1	11008349	11008349	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11008349C>T	uc010oao.1	-	8	1401	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	C1orf127_uc001arr.1_Missense_Mutation_p.E448K|C1orf127_uc001ars.1_Missense_Mutation_p.E440K	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	466										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		GAGCACGTTTCCTGGGGCTCT	0.662													38	96					0	0	1	0	0
MASP2	10747	broad.mit.edu	37	1	11102947	11102947	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11102947G>A	uc001aru.2	-	6	895	c.874C>T	c.(874-876)CAC>TAC	p.H292Y		NM_006610	NP_006601	O00187	MASP2_HUMAN	mannan-binding lectin serine protease 2 isoform	292	CUB 2.				complement activation, classical pathway|complement activation, lectin pathway|proteolysis	extracellular region	calcium ion binding|calcium-dependent protein binding|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.071)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)		CTCGTGTAGTGGATCTTCCAG	0.532													42	92					0	0	1	0	0
EXOSC10	5394	broad.mit.edu	37	1	11150690	11150690	+	Missense_Mutation	SNP	G	A	A	rs146582265	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11150690G>A	uc001asa.2	-	6	729	c.679C>T	c.(679-681)CGT>TGT	p.R227C	EXOSC10_uc001asb.2_Missense_Mutation_p.R227C|EXOSC10_uc009vmy.1_Missense_Mutation_p.R227C	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	227					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		TCCTCAGGACGATCCTGTGGG	0.517													14	32					0	0	1	0	0
MTOR	2475	broad.mit.edu	37	1	11177099	11177099	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11177099G>A	uc001asd.2	-	50	7099	c.6978C>T	c.(6976-6978)GTC>GTT	p.V2326V	MTOR_uc001asc.2_Silent_p.V531V	NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	2326	PI3K/PI4K.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CCATTGACATGACCGCTAAAG	0.378													49	116					0	0	1	0	0
MTOR	2475	broad.mit.edu	37	1	11186751	11186751	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11186751G>A	uc001asd.2	-	46	6575	c.6454C>T	c.(6454-6456)CGC>TGC	p.R2152C	MTOR_uc001asc.2_Missense_Mutation_p.R357C	NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	2152					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GACTGAATGCGAATGATTGGC	0.493													34	74					0	0	1	0	0
MTOR	2475	broad.mit.edu	37	1	11189841	11189841	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11189841G>A	uc001asd.2	-	40	5789	c.5668C>T	c.(5668-5670)CGT>TGT	p.R1890C	MTOR_uc001asc.2_Missense_Mutation_p.R95C	NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1890	FAT.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GAGATGGAACGGAAGAAGCCC	0.478													10	55					0	0	1	0	0
MTOR	2475	broad.mit.edu	37	1	11199665	11199665	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11199665G>A	uc001asd.2	-	35	5044	c.4923C>T	c.(4921-4923)TCC>TCT	p.S1641S		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1641	FAT.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						TGACCACAAGGGACCGCACCA	0.498													60	154					0	0	1	0	0
MTOR	2475	broad.mit.edu	37	1	11204731	11204731	+	Missense_Mutation	SNP	G	A	A	rs17848545	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11204731G>A	uc001asd.2	-	34	4967	c.4846C>T	c.(4846-4848)CGC>TGC	p.R1616C		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1616	FAT.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CAGATCTGGCGGATGATCTCT	0.582													20	52					0	0	1	0	0
ANGPTL7	10218	broad.mit.edu	37	1	11253760	11253760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11253760G>A	uc001ase.2	+	3	840	c.601G>A	c.(601-603)GAC>AAC	p.D201N	MTOR_uc001asd.2_Intron	NM_021146	NP_066969	O43827	ANGL7_HUMAN	angiopoietin-like 7 precursor	201	Fibrinogen C-terminal.				response to oxidative stress|signal transduction	extracellular region	receptor binding				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.39e-06)|COAD - Colon adenocarcinoma(227;0.000244)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0487)		CATCCGTGGGGACTTCTGGCT	0.597													26	58					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11562736	11562736	+	Silent	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11562736C>G	uc001ash.3	+	3	1236	c.1098C>G	c.(1096-1098)GGC>GGG	p.G366G	PTCHD2_uc001asi.1_Silent_p.G366G	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	366	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TCCTTGCAGGCTCCCTGGAGC	0.607													11	17					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11580895	11580895	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11580895C>T	uc001ash.3	+	10	2490	c.2352C>T	c.(2350-2352)ATC>ATT	p.I784I	PTCHD2_uc001asi.1_Silent_p.I784I	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	784	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TCTCCTGCATCACCTGTTCAG	0.637													7	9					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11584065	11584065	+	Missense_Mutation	SNP	G	A	A	rs61744927		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11584065G>A	uc001ash.3	+	11	2567	c.2429G>A	c.(2428-2430)CGA>CAA	p.R810Q	PTCHD2_uc001asi.1_Missense_Mutation_p.R810Q	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	810	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		AAGAAGAGGCGAGGCTCAGGG	0.652													6	50					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11589616	11589616	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11589616G>A	uc001ash.3	+	14	2940	c.2802G>A	c.(2800-2802)AAG>AAA	p.K934K		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	934	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TCCACAGGAAGCTGTACTTCG	0.667													41	85					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11596488	11596488	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11596488C>T	uc001ash.3	+	21	4062	c.3924C>T	c.(3922-3924)TTC>TTT	p.F1308F		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1308	Helical; (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TGCCCCTCTTCTTCTGCATCA	0.642													23	65					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11596500	11596500	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11596500C>T	uc001ash.3	+	21	4074	c.3936C>T	c.(3934-3936)ATC>ATT	p.I1312I		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1312	Helical; (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TCTGCATCATCGCCCCATTTG	0.637													27	69					0	0	1	0	0
FBXO2	26232	broad.mit.edu	37	1	11710068	11710068	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11710068G>A	uc001asj.2	-	3	797	c.455C>T	c.(454-456)CCT>CTT	p.P152L	FBXO2_uc009vna.2_Missense_Mutation_p.P152L|FBXO2_uc009vnb.1_RNA	NM_012168	NP_036300	Q9UK22	FBX2_HUMAN	F-box only protein 2	152	FBA.				glycoprotein catabolic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|endoplasmic reticulum|membrane|microsome|SCF ubiquitin ligase complex	sugar binding|ubiquitin-protein ligase activity				0	Ovarian(185;0.249)	Lung NSC(185;9.37e-06)|all_lung(284;1.39e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|BRCA - Breast invasive adenocarcinoma(304;1.88e-06)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|Lung(427;0.0146)|LUSC - Lung squamous cell carcinoma(448;0.0228)|READ - Rectum adenocarcinoma(331;0.0649)		ACTGTCTCCAGGCAGCTCCTC	0.612													14	196					0	0	1	0	0
C1orf187	374946	broad.mit.edu	37	1	11766354	11766354	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11766354C>T	uc001asr.1	+	2	179	c.39C>T	c.(37-39)TTC>TTT	p.F13F		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	13					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		CCATGCTGTTCCTCGTCCTCC	0.652													10	22					0	0	1	0	0
C1orf187	374946	broad.mit.edu	37	1	11766499	11766499	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11766499C>T	uc001asr.1	+	2	324	c.184C>T	c.(184-186)CCG>TCG	p.P62S		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	62					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		CCGGCGGGGCCCGGGCAAGAA	0.721													9	15					0	0	1	0	0
AGTRAP	57085	broad.mit.edu	37	1	11808498	11808498	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11808498C>T	uc001asv.2	+	4	319	c.195C>T	c.(193-195)ATC>ATT	p.I65I	AGTRAP_uc001ast.2_Missense_Mutation_p.L98F|AGTRAP_uc001asu.2_Missense_Mutation_p.L98F|AGTRAP_uc001asw.2_Silent_p.I65I|AGTRAP_uc001asx.2_Missense_Mutation_p.L54F	NM_020350	NP_065083	Q6RW13	ATRAP_HUMAN	angiotensin II receptor-associated protein	65	Helical; (Potential).					cytoplasmic vesicle membrane|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein binding		AGTRAP/BRAF(2)	stomach(2)	2	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.46e-06)|COAD - Colon adenocarcinoma(227;0.000256)|BRCA - Breast invasive adenocarcinoma(304;0.0003)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCCACCATCTTCCTGGACA	0.627													21	57					0	0	1	0	0
NPPA	4878	broad.mit.edu	37	1	11907192	11907193	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11907192_11907193CC>TT	uc001ati.2	-	2	526_527	c.427_428GG>AA	c.(427-429)GGA>AAA	p.G143K	CLCN6_uc010oav.1_Intron|CLCN6_uc010oaw.1_Intron|CLCN6_uc010oax.1_Intron|CLCN6_uc010oay.1_Intron|CLCN6_uc010oaz.1_Intron|CLCN6_uc010oba.1_Intron	NM_006172	NP_006163	P01160	ANF_HUMAN	natriuretic peptide precursor A preproprotein	143					cGMP biosynthetic process|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size	extracellular region	hormone activity			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00149)|all_lung(284;0.00189)|Breast(348;0.00586)|Colorectal(325;0.0062)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0556)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.04e-06)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|Kidney(185;0.000733)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACAGCCCAGTCCGCTCTGGGCT	0.594													128	301					0	0	1	0	0
NPPB	4879	broad.mit.edu	37	1	11918354	11918354	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11918354C>T	uc001atj.2	-	2	407	c.305G>A	c.(304-306)CGA>CAA	p.R102Q		NM_002521	NP_002512	P16860	ANFB_HUMAN	natriuretic peptide precursor B preproprotein	102					body fluid secretion|cGMP biosynthetic process|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation	extracellular space	diuretic hormone activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)	Carvedilol(DB01136)|Nesiritide(DB04899)|Testosterone(DB00624)	CTTGGGGCTTCGTGGTGCCCG	0.642													15	36					0	0	1	0	0
NPPB	4879	broad.mit.edu	37	1	11918493	11918493	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:11918493C>T	uc001atj.2	-	2	268	c.166G>A	c.(166-168)GAG>AAG	p.E56K		NM_002521	NP_002512	P16860	ANFB_HUMAN	natriuretic peptide precursor B preproprotein	56					body fluid secretion|cGMP biosynthetic process|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation	extracellular space	diuretic hormone activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)	Carvedilol(DB01136)|Nesiritide(DB04899)|Testosterone(DB00624)	ACCTGCAGCTCCGACAGTTTG	0.657													17	31					0	0	1	0	0
MIIP	60672	broad.mit.edu	37	1	12090106	12090106	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12090106C>T	uc001ato.1	+	8	1047	c.867C>T	c.(865-867)ATC>ATT	p.I289I		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	289										ovary(1)	1						CGCTGTCGATCCTGGAGCCCC	0.682													18	52					0	0	1	0	0
TNFRSF8	943	broad.mit.edu	37	1	12144525	12144525	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12144525G>A	uc001atq.2	+	2	290	c.68G>A	c.(67-69)CGA>CAA	p.R23Q	TNFRSF8_uc010obc.1_Intron	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	23	Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		TGCCAGGATCGACCCTTCGAG	0.597													10	104					0	0	1	0	0
TNFRSF8	943	broad.mit.edu	37	1	12164447	12164447	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12164447G>A	uc001atq.2	+	4	502	c.280G>A	c.(280-282)GAG>AAG	p.E94K	TNFRSF8_uc010obc.1_5'UTR	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	94	Extracellular (Potential).|TNFR-Cys 2.				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		CGACCTCGTGGAGAAGACGCC	0.592													28	70					0	0	1	0	0
TNFRSF1B	7133	broad.mit.edu	37	1	12253142	12253142	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12253142C>T	uc001att.2	+	6	863	c.774C>T	c.(772-774)TTC>TTT	p.F258F	TNFRSF1B_uc001atu.2_Silent_p.F63F|TNFRSF1B_uc009vnk.2_RNA	NM_001066	NP_001057	P20333	TNR1B_HUMAN	tumor necrosis factor receptor 2 precursor	258	Helical; (Potential).				apoptosis	extracellular region|integral to membrane|membrane raft|plasma membrane	tumor necrosis factor receptor activity			liver(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.72e-05)|all_lung(284;9.92e-05)|Renal(390;0.000147)|Colorectal(325;0.000584)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;5.52e-07)|COAD - Colon adenocarcinoma(227;0.000345)|BRCA - Breast invasive adenocarcinoma(304;0.000353)|Kidney(185;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00302)|STAD - Stomach adenocarcinoma(313;0.00815)|READ - Rectum adenocarcinoma(331;0.0284)	Etanercept(DB00005)|Infliximab(DB00065)	CTGGCGACTTCGCTCTTCCAG	0.423													4	30					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12336400	12336400	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12336400C>T	uc001atv.2	+	19	2896	c.2755C>T	c.(2755-2757)CCC>TCC	p.P919S	VPS13D_uc001atw.2_Missense_Mutation_p.P919S|VPS13D_uc001atx.2_Missense_Mutation_p.P107S	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	919					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AAAGATTTTTCCCCAGGAGGA	0.438											OREG0013110	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	42					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12343258	12343258	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12343258T>A	uc001atv.2	+	21	5240	c.5099T>A	c.(5098-5100)TTA>TAA	p.L1700*	VPS13D_uc001atw.2_Nonsense_Mutation_p.L1700*|VPS13D_uc001atx.2_Nonsense_Mutation_p.L888*	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1700					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CCATCTAGTTTAGCACAAAAA	0.468													54	113					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12343364	12343364	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12343364C>T	uc001atv.2	+	21	5346	c.5205C>T	c.(5203-5205)GTC>GTT	p.V1735V	VPS13D_uc001atw.2_Silent_p.V1735V|VPS13D_uc001atx.2_Silent_p.V923V	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1735					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CTCCTAATGTCTTCCAGTTGT	0.493													20	70					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12343664	12343664	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12343664C>T	uc001atv.2	+	21	5646	c.5505C>T	c.(5503-5505)ATC>ATT	p.I1835I	VPS13D_uc001atw.2_Silent_p.I1835I|VPS13D_uc001atx.2_Silent_p.I1023I	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1835					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TTTTTGGAATCGGCTCCACTG	0.483													45	149					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12353605	12353605	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12353605C>T	uc001atv.2	+	24	6018	c.5877C>T	c.(5875-5877)CTC>CTT	p.L1959L	VPS13D_uc001atw.2_Silent_p.L1959L|VPS13D_uc001atx.2_Silent_p.L1147L	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1959					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		ACCCTCTGCTCCGGAGAGAAC	0.483													10	53					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12364652	12364652	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12364652C>T	uc001atv.2	+	26	6447	c.6306C>T	c.(6304-6306)TCC>TCT	p.S2102S	VPS13D_uc001atw.2_Silent_p.S2102S|VPS13D_uc001atx.2_Silent_p.S1290S	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2102					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GAACCCATTCCCAGGGGCAGT	0.567													22	61					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12409257	12409257	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12409257C>T	uc001atv.2	+	46	9398	c.9257C>T	c.(9256-9258)TCG>TTG	p.S3086L	VPS13D_uc001atw.2_Missense_Mutation_p.S3061L|VPS13D_uc001atx.2_Missense_Mutation_p.S2273L	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3085					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CCAGGGGATTCGTTTGCTGTG	0.502													43	160					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12445349	12445349	+	Missense_Mutation	SNP	C	T	T	rs147684777		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12445349C>T	uc001atv.2	+	59	11542	c.11401C>T	c.(11401-11403)CGT>TGT	p.R3801C	VPS13D_uc001atw.2_Missense_Mutation_p.R3776C|VPS13D_uc001atx.2_Missense_Mutation_p.R2988C|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3800					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GAAAAGCAGCCGTTCATATGA	0.393													5	66					0	0	1	0	0
DHRS3	9249	broad.mit.edu	37	1	12638970	12638970	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12638970G>A	uc001auc.2	-	4	941	c.474C>T	c.(472-474)TTC>TTT	p.F158F	DHRS3_uc001aub.2_Silent_p.F73F	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	158					retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	TACGTGGCAGGAAGGCCTTGG	0.622													7	34					0	0	1	0	0
DHRS3	9249	broad.mit.edu	37	1	12677180	12677180	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12677180G>A	uc001auc.2	-	1	641	c.174C>T	c.(172-174)TTC>TTT	p.F58F	DHRS3_uc001aub.2_5'Flank|DHRS3_uc009vnm.2_Silent_p.F58F|DHRS3_uc001aud.3_Silent_p.F58F	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	58					retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	CGCGCTCCGCGAACTCGCGGG	0.731													26	49					0	0	1	0	0
AADACL4	343066	broad.mit.edu	37	1	12704715	12704715	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12704715C>T	uc001auf.2	+	1	150	c.150C>T	c.(148-150)TTC>TTT	p.F50F		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	50	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		ATTGCATATTCCTCTACCTGG	0.507													58	174					0	0	1	0	0
AADACL4	343066	broad.mit.edu	37	1	12711222	12711222	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12711222G>A	uc001auf.2	+	2	249	c.249G>A	c.(247-249)AAG>AAA	p.K83K		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	83	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		GAATTAAAAAGGACCCTGAAC	0.483													45	114					0	0	1	0	0
AADACL4	343066	broad.mit.edu	37	1	12711243	12711243	+	Silent	SNP	C	T	T	rs140616597		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12711243C>T	uc001auf.2	+	2	270	c.270C>T	c.(268-270)ACC>ACT	p.T90T		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	90	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		TTGTGGTGACCGACCTGCGTT	0.502													44	107					0	0	1	0	0
AADACL4	343066	broad.mit.edu	37	1	12725985	12725985	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12725985C>T	uc001auf.2	+	4	463	c.463C>T	c.(463-465)CCT>TCT	p.P155S		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	155	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		CCGCAAGCTTCCTGACCACCA	0.522													22	80					0	0	1	0	0
AADACL4	343066	broad.mit.edu	37	1	12725998	12726000	+	Missense_Mutation	TNP	CCC	TTT	TTT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12725998_12726000CCC>TTT	uc001auf.2	+	4	476_478	c.476_478CCC>TTT	c.(475-480)TCCCCT>TTTTCT	p.159_160SP>FS		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	159_160	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		GACCACCATTCCCCTGCCCTTTT	0.527													24	86					0	0	1	0	0
AADACL4	343066	broad.mit.edu	37	1	12726382	12726382	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12726382C>T	uc001auf.2	+	4	860	c.860C>T	c.(859-861)CCT>CTT	p.P287L		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	287	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		TGGCTCAGCCCTGACAACATC	0.512													47	106					0	0	1	0	0
AADACL3	126767	broad.mit.edu	37	1	12785679	12785679	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12785679G>A	uc009vnn.1	+	4	1002	c.769G>A	c.(769-771)GAA>AAA	p.E257K	AADACL3_uc001aug.1_Missense_Mutation_p.E187K	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	257							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TGCTTACTTGGAAGTAAGTGT	0.502													63	120					0	0	1	0	0
AADACL3	126767	broad.mit.edu	37	1	12785747	12785747	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12785747C>T	uc009vnn.1	+	4	1070	c.837C>T	c.(835-837)CTC>CTT	p.L279L	AADACL3_uc001aug.1_Silent_p.L209L	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	279							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TGTCTCAGCTCCCGGAAACCT	0.522													58	89					0	0	1	0	0
C1orf158	93190	broad.mit.edu	37	1	12815753	12815753	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12815753G>A	uc001auh.2	+	2	431	c.215G>A	c.(214-216)AGG>AAG	p.R72K	C1orf158_uc010obe.1_Missense_Mutation_p.R72K	NM_152290	NP_689503	Q8N1D5	CA158_HUMAN	hypothetical protein LOC93190	72										ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00575)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TATGGGAAGAGGAAAGTTGAG	0.527													18	36					0	0	1	0	0
C1orf158	93190	broad.mit.edu	37	1	12819318	12819318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12819318C>T	uc001auh.2	+	3	517	c.301C>T	c.(301-303)CAT>TAT	p.H101Y	C1orf158_uc010obe.1_Missense_Mutation_p.H101Y	NM_152290	NP_689503	Q8N1D5	CA158_HUMAN	hypothetical protein LOC93190	101										ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00575)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CTATGACGACCATTACAACCG	0.567													74	166					0	0	1	0	0
C1orf158	93190	broad.mit.edu	37	1	12820790	12820790	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12820790C>T	uc001auh.2	+	4	707	c.491C>T	c.(490-492)TCA>TTA	p.S164L		NM_152290	NP_689503	Q8N1D5	CA158_HUMAN	hypothetical protein LOC93190	164										ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00575)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		ACTTATACTTCATCCTACCCC	0.567													34	86					0	0	1	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12836064	12836064	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12836064C>T	uc001aui.2	+	2	693	c.666C>T	c.(664-666)TTC>TTT	p.F222F		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	222										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTATAAGGTTCGCCCCTTACC	0.527													62	126					0	0	1	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12837370	12837370	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12837370C>T	uc001aui.2	+	3	1107	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	360	LRR 2.									ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACTGTGGGATCGTGGATTCCC	0.617													50	138					0	0	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12853596	12853596	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12853596C>T	uc001auj.1	+	2	323	c.220C>T	c.(220-222)CAT>TAT	p.H74Y		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	74											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GAAGACGCTTCATTTGGAGAC	0.557													53	149					0	0	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854106	12854106	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12854106G>A	uc001auj.1	+	3	433	c.330G>A	c.(328-330)GAG>GAA	p.E110E		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	110											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ATGTTGACGAGAATTTCTGGG	0.542													123	592					0	0	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854285	12854285	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12854285G>A	uc001auj.1	+	3	612	c.509G>A	c.(508-510)TGG>TAG	p.W170*		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	170											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTCTTCCAGTGGGTTTACCAA	0.433													43	501					0	0	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854466	12854466	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12854466G>A	uc001auj.1	+	3	793	c.690G>A	c.(688-690)GAG>GAA	p.E230E		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	230											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACCTGAAGGAGATGAAGAATC	0.418													26	618					0	0	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12855782	12855782	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12855782C>T	uc001auj.1	+	4	1165	c.1062C>T	c.(1060-1062)CTC>CTT	p.L354L		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	354	LRR 2.										0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCAAAACCCTCATCTTGGAGG	0.537													63	357					0	0	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12855900	12855900	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12855900C>T	uc001auj.1	+	4	1283	c.1180C>T	c.(1180-1182)CTG>TTG	p.L394L		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	394											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TATTGACGCCCTGAAGGACCT	0.552													43	206					0	0	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12856145	12856145	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12856145G>A	uc001auj.1	+	4	1528	c.1425G>A	c.(1423-1425)TAG>TAA	p.*475*		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	475											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTTGCTGCTAGGGAAGGCGTG	0.517													17	137					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907435	12907435	+	Silent	SNP	C	T	T	rs2076062		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12907435C>T	uc009vno.2	-	1	803	c.708G>A	c.(706-708)GTG>GTA	p.V236V	HNRNPCL1_uc010obf.1_Silent_p.V236V	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	236							nucleic acid binding|nucleotide binding				0						ACTCCATCTTCACATGAGTCT	0.478													15	257					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907474	12907474	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12907474C>T	uc009vno.2	-	1	764	c.669G>A	c.(667-669)GAG>GAA	p.E223E	HNRNPCL1_uc010obf.1_Silent_p.E223E	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	223							nucleic acid binding|nucleotide binding				0						TACTGCTCTGCTCCTCTTCTG	0.463													62	180					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907641	12907641	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12907641C>T	uc009vno.2	-	1	597	c.502G>A	c.(502-504)GGA>AGA	p.G168R	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G168R	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	168							nucleic acid binding|nucleotide binding				0						TTGGAAGATCCCCGCTTTCCA	0.478													102	508					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907650	12907650	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12907650C>T	uc009vno.2	-	1	588	c.493G>A	c.(493-495)GGA>AGA	p.G165R	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G165R	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	165							nucleic acid binding|nucleotide binding				0						CCCCGCTTTCCACTCTTAGAA	0.488													92	478					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907685	12907685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12907685G>A	uc009vno.2	-	1	553	c.458C>T	c.(457-459)TCA>TTA	p.S153L	HNRNPCL1_uc010obf.1_Missense_Mutation_p.S153L	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	153							nucleic acid binding|nucleotide binding				0						GCCCCTTCGTGAGGTGTTTCC	0.498													66	395					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907749	12907749	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12907749G>A	uc009vno.2	-	1	489	c.394C>T	c.(394-396)CCT>TCT	p.P132S	HNRNPCL1_uc010obf.1_Missense_Mutation_p.P132S	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	132							nucleic acid binding|nucleotide binding				0						GGAGGAGGAGGAGGTACACGT	0.498													34	209					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907882	12907882	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12907882C>T	uc009vno.2	-	1	356	c.261G>A	c.(259-261)GAG>GAA	p.E87E	HNRNPCL1_uc010obf.1_Silent_p.E87E	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	87							nucleic acid binding|nucleotide binding				0						TCACTTTTGGCTCTGCAGCCA	0.478													26	267					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907971	12907971	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12907971C>T	uc009vno.2	-	1	267	c.172G>A	c.(172-174)GAT>AAT	p.D58N	HNRNPCL1_uc010obf.1_Missense_Mutation_p.D58N	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	58							nucleic acid binding|nucleotide binding				0						TTCTCCTTATCATATTGAACG	0.468													32	278					0	0	1	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12918988	12918988	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12918988G>A	uc001aum.1	+	2	211	c.124G>A	c.(124-126)GAG>AAG	p.E42K		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	42											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACTCTTCAGGGAGGCCTTCAG	0.597													43	213					0	0	1	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919074	12919074	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12919074G>A	uc001aum.1	+	2	297	c.210G>A	c.(208-210)ATG>ATA	p.M70I		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	70											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TATCGCTGATGAAGACGCTTC	0.567													87	295					0	0	1	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919144	12919144	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12919144C>T	uc001aum.1	+	2	367	c.280C>T	c.(280-282)CGC>TGC	p.R94C		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	94											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACAGAAGGATCGCCCCAGGTG	0.552													95	308					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12939556	12939556	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12939556G>A	uc001aun.2	-	4	1317	c.1246C>T	c.(1246-1248)CCT>TCT	p.P416S		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	416										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CGGGGGGCAGGATACAGCTCC	0.512													70	629					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12939636	12939636	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12939636C>T	uc001aun.2	-	4	1237	c.1166G>A	c.(1165-1167)GGA>GAA	p.G389E		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	389	LRR 6.									ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GATGGGATTTCCACAGAAGCT	0.522													94	286					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12941788	12941788	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12941788C>T	uc001aun.2	-	3	833	c.762G>A	c.(760-762)CAG>CAA	p.Q254Q		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	254	LRR 1.									ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCTCCTTCTTCTGCTCTGGGG	0.498													100	240					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12942180	12942180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12942180G>A	uc001aun.2	-	3	441	c.370C>T	c.(370-372)CAT>TAT	p.H124Y		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	124										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AAGCACCCATGGGCCATAGCT	0.493													86	206					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943017	12943017	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12943017G>A	uc001aun.2	-	2	270	c.199C>T	c.(199-201)CCT>TCT	p.P67S		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	67										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGCCTCAGAGGGAGGCGGCGG	0.602													26	79					0	0	1	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12954428	12954428	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12954428C>T	uc001auo.2	-	3	928	c.855G>A	c.(853-855)GAG>GAA	p.E285E		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	285											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGAGCAGGTGCTCCAGGTGCT	0.373													15	106					0	0	1	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12954498	12954498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12954498G>A	uc001auo.2	-	3	858	c.785C>T	c.(784-786)CCA>CTA	p.P262L		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	262											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCAGAGGAATGGAGAGTCCAA	0.473													23	286					0	0	1	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12954982	12954982	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12954982G>A	uc001auo.2	-	3	374	c.301C>T	c.(301-303)CAA>TAA	p.Q101*		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	101											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCCAGCACTTGAAGTTTCCAC	0.527													50	316					0	0	1	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12955431	12955431	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12955431C>T	uc001auo.2	-	2	321	c.248G>A	c.(247-249)AGG>AAG	p.R83K		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	83											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ATCAAGTCCCCTCAGGACAGC	0.612													17	47					0	0	1	0	0
PRAMEF8	391002	broad.mit.edu	37	1	12979735	12979735	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12979735G>A	uc001aup.2	+	4	1010	c.927G>A	c.(925-927)TTG>TTA	p.L309L		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	309											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGTCGGACTTGAAGCATCTCT	0.567													14	138					0	0	1	0	0
PRAMEF8	391002	broad.mit.edu	37	1	12979755	12979755	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12979755C>T	uc001aup.2	+	4	1030	c.947C>T	c.(946-948)CCG>CTG	p.P316L		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	316											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCTTGGTGCCCGAGCATCCGT	0.572													49	101					0	0	1	0	0
PRAMEF8	391002	broad.mit.edu	37	1	12979793	12979793	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12979793G>T	uc001aup.2	+	4	1068	c.985G>T	c.(985-987)GTC>TTC	p.V329F		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	329	LRR 1.										0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCTGAGGGGTGTCACGCTGAC	0.572													14	128					1.49906e-05	1.50136e-05	1	1	0
PRAMEF8	391002	broad.mit.edu	37	1	12979817	12979817	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:12979817G>A	uc001aup.2	+	4	1092	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	337	LRR 1.										0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTTCAGCCCTGAGCCCCTCAC	0.582													10	99					0	0	1	0	0
PRAMEF22	653606	broad.mit.edu	37	1	13036637	13036637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:13036637C>T	uc009vnq.1	+	2	709	c.709C>T	c.(709-711)CGC>TGC	p.R237C	PRAMEF5_uc001aur.2_Intron	NM_001100631	NP_001094101	A3QJZ6	PRA22_HUMAN	PRAME family member 22	237											0						GAGGAATCTTCGCAAACTCTT	0.473													79	220					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183087	13183087	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:13183087C>T	uc010obg.1	-	1	881	c.786G>A	c.(784-786)CAG>CAA	p.Q262Q		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	262						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GGTTGTCCCCCTGATCTTCAT	0.468													15	101					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183179	13183179	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:13183179C>G	uc010obg.1	-	1	789	c.694G>C	c.(694-696)GAT>CAT	p.D232H		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	232						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TGAGTCTCATCTTTCTTCATG	0.463													27	168					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183312	13183312	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:13183312C>T	uc010obg.1	-	1	656	c.561G>A	c.(559-561)TTG>TTA	p.L187L		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	187						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TTATCTGGGTCAACTCCTGCT	0.438													65	740					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183728	13183728	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:13183728G>A	uc010obg.1	-	1	240	c.145C>T	c.(145-147)CAT>TAT	p.H49Y		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	49						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						AAGCCCTTATGAACAGAGCAG	0.468													32	66					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183816	13183816	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:13183816G>A	uc010obg.1	-	1	152	c.57C>T	c.(55-57)TTC>TTT	p.F19F		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	19						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GATTCCCAATGAACACACGGG	0.458													26	88					0	0	1	0	0
PDPN	10630	broad.mit.edu	37	1	13910382	13910382	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:13910382C>T	uc001avd.2	+	1	131	c.82C>T	c.(82-84)CTC>TTC	p.L28F	PDPN_uc001avc.2_Missense_Mutation_p.L28F|PDPN_uc009vob.2_5'Flank|PDPN_uc009voc.2_5'Flank|PDPN_uc001ave.2_5'Flank|PDPN_uc001avf.2_5'Flank	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	Error:Variant_position_missing_in_Q86YL7_after_alignment					cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		GGCACCCTCCCTCTCCGGGGC	0.647													22	43					0	0	1	0	0
PDPN	10630	broad.mit.edu	37	1	13936915	13936915	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:13936915C>T	uc001avd.2	+	3	512	c.463C>T	c.(463-465)CGC>TGC	p.R155C	PDPN_uc001avc.2_Missense_Mutation_p.R155C|PDPN_uc009vob.2_Missense_Mutation_p.R37C|PDPN_uc009voc.2_Missense_Mutation_p.R37C|PDPN_uc001ave.2_Missense_Mutation_p.R37C|PDPN_uc001avf.2_Missense_Mutation_p.R37C	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	79	Extracellular (Potential).				cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		AACAGGCATTCGCATCGAGGA	0.478													36	93					0	0	1	0	0
PRDM2	7799	broad.mit.edu	37	1	14106380	14106380	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:14106380C>T	uc001avi.2	+	8	2946	c.2090C>T	c.(2089-2091)ACC>ATC	p.T697I	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.T697I|PRDM2_uc001avj.2_Intron|PRDM2_uc009vod.1_Missense_Mutation_p.T454I|PRDM2_uc001avk.2_Missense_Mutation_p.T496I|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	697						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		CTTCTTCAAACCCAAGATAAA	0.398													32	87					0	0	1	0	0
PRDM2	7799	broad.mit.edu	37	1	14106581	14106581	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:14106581C>T	uc001avi.2	+	8	3147	c.2291C>T	c.(2290-2292)ACC>ATC	p.T764I	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.T764I|PRDM2_uc001avj.2_Intron|PRDM2_uc009vod.1_Missense_Mutation_p.T521I|PRDM2_uc001avk.2_Missense_Mutation_p.T563I|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	764						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		GCAGCATGGACCGATGCCGGG	0.517													12	116					0	0	1	0	0
PRDM2	7799	broad.mit.edu	37	1	14107221	14107221	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:14107221C>T	uc001avi.2	+	8	3787	c.2931C>T	c.(2929-2931)CCC>CCT	p.P977P	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Silent_p.P977P|PRDM2_uc001avj.2_Intron|PRDM2_uc001avk.2_Silent_p.P776P|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	977	Pro-rich.|SH3-binding (Potential).					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		CACCCTGTCCCCCGGTATTAA	0.607													18	179					0	0	1	0	0
KAZ	23254	broad.mit.edu	37	1	14925592	14925592	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:14925592C>T	uc001avm.3	+	1	380	c.99C>T	c.(97-99)ACC>ACT	p.T33T	KAZ_uc009vog.1_Silent_p.T33T|KAZ_uc010obj.1_Silent_p.T33T	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	33					keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						TCACGGCCACCAACCGGAGAC	0.448													12	40					0	0	1	0	0
CTRC	11330	broad.mit.edu	37	1	15766993	15766993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:15766993C>T	uc001awi.1	+	3	160	c.137C>T	c.(136-138)TCC>TTC	p.S46F	CTRC_uc001awj.1_Missense_Mutation_p.S46F	NM_007272	NP_009203	Q99895	CTRC_HUMAN	chymotrypsin C preproprotein	46	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0		Breast(348;0.000207)|all_lung(284;0.00021)|Colorectal(325;0.000257)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)|Hepatocellular(190;0.0634)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTGCAGATCTCCCTCCAGTAC	0.617													16	21					0	0	1	0	0
CELA2A	63036	broad.mit.edu	37	1	15789234	15789234	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:15789234C>T	uc001awk.2	+	4	260	c.234C>T	c.(232-234)TCC>TCT	p.S78S		NM_033440	NP_254275	P08217	CEL2A_HUMAN	elastase 2A preproprotein	78	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CCAGCTCCTCCAGGACCTACC	0.617													39	100					0	0	1	0	0
CELA2A	63036	broad.mit.edu	37	1	15789950	15789950	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:15789950C>T	uc001awk.2	+	5	452	c.426C>T	c.(424-426)CTC>CTT	p.L142L		NM_033440	NP_254275	P08217	CEL2A_HUMAN	elastase 2A preproprotein	142	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						TGGCCTGCCTCCCTCCTGCCG	0.627													40	72					0	0	1	0	0
CASP9	842	broad.mit.edu	37	1	15844812	15844812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:15844812G>A	uc001awn.2	-	2	306	c.211C>T	c.(211-213)CCT>TCT	p.P71S	CASP9_uc001awm.1_Missense_Mutation_p.P71S|CASP9_uc001awo.2_Missense_Mutation_p.P71S|CASP9_uc001awp.2_5'UTR|CASP9_uc009voi.2_5'UTR|CASP9_uc010obm.1_5'UTR|CASP9_uc001awq.2_5'UTR	NM_001229	NP_001220	P55211	CASP9_HUMAN	caspase 9 isoform alpha preproprotein	71	CARD.				activation of caspase activity by cytochrome c|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol	cysteine-type endopeptidase activity|enzyme activator activity|protein binding			central_nervous_system(1)|kidney(1)	2		Breast(348;0.000207)|all_lung(284;0.000211)|Colorectal(325;0.000259)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;8.49e-07)|COAD - Colon adenocarcinoma(227;4.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00013)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00763)|READ - Rectum adenocarcinoma(331;0.0655)		ATGAACAAAGGAAGAGCCTGA	0.547													25	70					0	0	1	0	0
DNAJC16	23341	broad.mit.edu	37	1	15874796	15874796	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:15874796C>T	uc001aws.2	+	7	1016	c.896C>T	c.(895-897)TCA>TTA	p.S299L	DNAJC16_uc001awr.1_Missense_Mutation_p.S299L|DNAJC16_uc001awt.2_5'UTR	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	299	Cytoplasmic (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		GATTATTTATCATTTGGATAT	0.383													17	48					0	0	1	0	0
DNAJC16	23341	broad.mit.edu	37	1	15874868	15874868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:15874868C>T	uc001aws.2	+	7	1088	c.968C>T	c.(967-969)GCC>GTC	p.A323V	DNAJC16_uc001awr.1_Missense_Mutation_p.A323V|DNAJC16_uc001awt.2_Missense_Mutation_p.A11V	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	323	Cytoplasmic (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		AATATCTACGCCCCTACCCTC	0.413													17	57					0	0	1	0	0
AGMAT	79814	broad.mit.edu	37	1	15905504	15905504	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:15905504C>T	uc001awv.1	-	4	713	c.570G>A	c.(568-570)ACG>ACA	p.T190T	DNAJC16_uc001awu.2_Intron	NM_024758	NP_079034	Q9BSE5	SPEB_HUMAN	agmatine ureohydrolase (agmatinase) precursor	190					putrescine biosynthetic process|spermidine biosynthetic process	mitochondrion	agmatinase activity|metal ion binding			skin(1)	1		Breast(348;0.000207)|Colorectal(325;0.000258)|Lung NSC(340;0.000359)|all_lung(284;0.000486)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.93e-07)|COAD - Colon adenocarcinoma(227;3.91e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000121)|KIRC - Kidney renal clear cell carcinoma(229;0.00257)|STAD - Stomach adenocarcinoma(313;0.00734)|READ - Rectum adenocarcinoma(331;0.0649)		CCTTGTCGGTCGTGTCCGTGT	0.642													15	46					0	0	1	0	0
AGMAT	79814	broad.mit.edu	37	1	15909693	15909693	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:15909693G>A	uc001awv.1	-	2	613	c.470C>T	c.(469-471)ACC>ATC	p.T157I	DNAJC16_uc001awu.2_Intron	NM_024758	NP_079034	Q9BSE5	SPEB_HUMAN	agmatine ureohydrolase (agmatinase) precursor	157					putrescine biosynthetic process|spermidine biosynthetic process	mitochondrion	agmatinase activity|metal ion binding			skin(1)	1		Breast(348;0.000207)|Colorectal(325;0.000258)|Lung NSC(340;0.000359)|all_lung(284;0.000486)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.93e-07)|COAD - Colon adenocarcinoma(227;3.91e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000121)|KIRC - Kidney renal clear cell carcinoma(229;0.00257)|STAD - Stomach adenocarcinoma(313;0.00734)|READ - Rectum adenocarcinoma(331;0.0649)		ATTACCCAAGGTCAGAGGAAT	0.493													15	43					0	0	1	0	0
DDI2	84301	broad.mit.edu	37	1	15978206	15978206	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:15978206C>T	uc001awx.1	+	8	1095	c.999C>T	c.(997-999)TCC>TCT	p.S333S	DDI2_uc009voj.1_Silent_p.S74S	NM_032341	NP_115717	Q5TDH0	DDI2_HUMAN	DNA-damage inducible protein 2	333					proteolysis		aspartic-type endopeptidase activity				0		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00327)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.03e-07)|COAD - Colon adenocarcinoma(227;4.48e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		CCAAGTGTTCCATCGACCTGA	0.413													16	52					0	0	1	0	0
TMEM82	388595	broad.mit.edu	37	1	16069654	16069654	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16069654C>T	uc001axc.2	+	3	439	c.301C>T	c.(301-303)CTC>TTC	p.L101F		NM_001013641	NP_001013663	A0PJX8	TMM82_HUMAN	transmembrane protein 82	101	Leu-rich.					integral to membrane				breast(1)|central_nervous_system(1)	2		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CGAGTTCTCCCTCCGGGCCGT	0.711													13	26					0	0	1	0	0
FBLIM1	54751	broad.mit.edu	37	1	16091552	16091552	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16091552C>T	uc001axd.1	+	4	517	c.74C>T	c.(73-75)GCC>GTC	p.A25V	FBLIM1_uc001axe.1_Missense_Mutation_p.A25V|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Missense_Mutation_p.A25V|FBLIM1_uc001axh.1_Missense_Mutation_p.A25V|FBLIM1_uc001axi.1_Missense_Mutation_p.A25V	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	25	Filamin-binding.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		CGCGATGTGGCCGTGGCGGAG	0.672													47	86					0	0	1	0	0
FBLIM1	54751	broad.mit.edu	37	1	16091602	16091602	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16091602C>T	uc001axd.1	+	4	567	c.124C>T	c.(124-126)CCC>TCC	p.P42S	FBLIM1_uc001axe.1_Missense_Mutation_p.P42S|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Missense_Mutation_p.P42S|FBLIM1_uc001axh.1_Missense_Mutation_p.P42S|FBLIM1_uc001axi.1_Missense_Mutation_p.P42S	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	42	Filamin-binding.|Pro-rich.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		GCGTGGCCGCCCCTGGGAGGC	0.706													25	51					0	0	1	0	0
FBLIM1	54751	broad.mit.edu	37	1	16097048	16097048	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16097048G>A	uc001axd.1	+	7	1129	c.686G>A	c.(685-687)CGA>CAA	p.R229Q	FBLIM1_uc001axe.1_Missense_Mutation_p.R229Q|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Missense_Mutation_p.R229Q|FBLIM1_uc001axh.1_Missense_Mutation_p.R132Q|FBLIM1_uc001axi.1_Missense_Mutation_p.R132Q	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	229	LIM zinc-binding 1.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		AAGGATGGGCGACCCCTCTGC	0.468													16	39					0	0	1	0	0
UQCRHL	440567	broad.mit.edu	37	1	16133972	16133972	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16133972G>A	uc009vol.1	-	1	223	c.173C>T	c.(172-174)TCC>TTC	p.S58F		NM_001089591	NP_001083060			ubiquinol-cytochrome c reductase hinge												0						TGATCGAGAGGATACATGCTC	0.473													68	160					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16199342	16199342	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16199342C>T	uc001axk.1	+	2	319	c.115C>T	c.(115-117)CCC>TCC	p.P39S	SPEN_uc010obp.1_5'Flank	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	39	By similarity.|RRM 1.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CAAAATTCTTCCCAAGAGGGG	0.398													27	65					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16235856	16235856	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16235856C>T	uc001axk.1	+	4	1126	c.922C>T	c.(922-924)CGA>TGA	p.R308*	SPEN_uc010obp.1_Nonsense_Mutation_p.R267*	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	308	Ser-rich.|By similarity.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TTCTCCAGCTCGATCAGTTCA	0.443													19	232					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16256058	16256058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16256058C>T	uc001axk.1	+	11	3527	c.3323C>T	c.(3322-3324)CCC>CTC	p.P1108L	SPEN_uc010obp.1_Missense_Mutation_p.P1067L	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1108					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AAGCCCATTCCCTCAAAACCA	0.463													12	38					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16256617	16256617	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16256617C>T	uc001axk.1	+	11	4086	c.3882C>T	c.(3880-3882)GTC>GTT	p.V1294V	SPEN_uc010obp.1_Silent_p.V1253V	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1294					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		ATGAAAAAGTCCTCCCCTATT	0.428													34	90					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16256942	16256942	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16256942C>T	uc001axk.1	+	11	4411	c.4207C>T	c.(4207-4209)CGA>TGA	p.R1403*	SPEN_uc010obp.1_Nonsense_Mutation_p.R1362*	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1403					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TGAAAGTTCTCGATTGTCTTT	0.418													35	65					0	0	1	0	0
C1orf64	149563	broad.mit.edu	37	1	16332591	16332591	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16332591A>G	uc001axn.2	+	2	328	c.260A>G	c.(259-261)GAA>GGA	p.E87G		NM_178840	NP_849162	Q8NEQ6	CA064_HUMAN	hypothetical protein LOC149563	87										breast(2)	2		Colorectal(325;0.000435)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.25e-07)|COAD - Colon adenocarcinoma(227;2.08e-05)|BRCA - Breast invasive adenocarcinoma(304;9.19e-05)|Kidney(64;0.000165)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		TTCTGTGGGGAAAACTGGCCC	0.642													55	98					0	0	1	0	0
CLCNKA	1187	broad.mit.edu	37	1	16351295	16351295	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16351295C>T	uc001axu.2	+	4	347	c.267C>T	c.(265-267)CAC>CAT	p.H89H	CLCNKA_uc001axt.2_Intron|CLCNKA_uc001axv.2_Silent_p.H89H|CLCNKA_uc010obw.1_Intron|CLCNKB_uc001axw.3_Intron	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	89					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	GGGACAGCCACCTGCTCCGGT	0.622													21	52					0	0	1	0	0
CLCNKA	1187	broad.mit.edu	37	1	16355714	16355714	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16355714G>A	uc001axu.2	+	12	1227	c.1147G>A	c.(1147-1149)GAC>AAC	p.D383N	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.D383N|CLCNKA_uc010obw.1_Missense_Mutation_p.D340N|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_Missense_Mutation_p.D30N|CLCNKA_uc010oby.1_Missense_Mutation_p.R112Q	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	383					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	CGAGGAGCTCGACCCCCAGCA	0.622													28	68					0	0	1	0	0
CLCNKA	1187	broad.mit.edu	37	1	16360108	16360108	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16360108G>A	uc001axu.2	+	20	2099	c.2019G>A	c.(2017-2019)ATG>ATA	p.M673I	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.M672I|CLCNKA_uc010obw.1_Missense_Mutation_p.M630I|CLCNKB_uc001axw.3_Intron	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	673	CBS 2.				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	TGTTCTAGATGAAGAAAGCAA	0.552													15	55					0	0	1	0	0
CLCNKB	1188	broad.mit.edu	37	1	16373106	16373106	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16373106C>T	uc001axw.3	+	4	386	c.306C>T	c.(304-306)GCC>GCT	p.A102A	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Silent_p.A102A|CLCNKB_uc001axy.3_5'Flank	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	102	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		ACCCTGTGGCCCTCGTCTCTT	0.597													20	66					0	0	1	0	0
CLCNKB	1188	broad.mit.edu	37	1	16376365	16376365	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16376365G>A	uc001axw.3	+	10	1002	c.922G>A	c.(922-924)GGC>AGC	p.G308S	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Missense_Mutation_p.G308S|CLCNKB_uc001axy.3_Missense_Mutation_p.G139S	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	308					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		AATCTTCTTTGGCTTCATCAG	0.602													73	139					0	0	1	0	0
EPHA2	1969	broad.mit.edu	37	1	16475029	16475031	+	Missense_Mutation	TNP	GGG	AAA	AAA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16475029_16475031GGG>AAA	uc001aya.1	-	3	802_804	c.665_667CCC>TTT	c.(664-669)TCCCTG>TTTTTG	p.S222F	EPHA2_uc010oca.1_Missense_Mutation_p.S222F	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	222	Extracellular (Potential).|Cys-rich.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	ACAGTGGCCAGGGAAGGTGCATC	0.665													7	55					0	0	1	0	0
EPHA2	1969	broad.mit.edu	37	1	16475061	16475061	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16475061G>A	uc001aya.1	-	3	772	c.635C>T	c.(634-636)CCT>CTT	p.P212L	EPHA2_uc010oca.1_Missense_Mutation_p.P212L	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	212	Extracellular (Potential).|Cys-rich.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GATGGTCTCAGGGAAGTGGGC	0.652													19	48					0	0	1	0	0
ARHGEF19	128272	broad.mit.edu	37	1	16528293	16528293	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16528293G>A	uc001ayc.1	-	14	2267	c.2130C>T	c.(2128-2130)GTC>GTT	p.V710V	ARHGEF19_uc009voo.1_Silent_p.V63V|ARHGEF19_uc001ayb.1_Silent_p.V187V	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	710					regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		CCTCACTGATGACCTCCTTGT	0.592													7	29					0	0	1	0	0
ARHGEF19	128272	broad.mit.edu	37	1	16532066	16532066	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16532066G>A	uc001ayc.1	-	9	1685	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F	ARHGEF19_uc009voo.1_5'UTR|ARHGEF19_uc001ayb.1_5'UTR	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	516	DH.				regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		TGATCCTCTGGAAGGGCAGGA	0.647													13	28					0	0	1	0	0
SPATA21	374955	broad.mit.edu	37	1	16735650	16735650	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16735650C>T	uc001ayn.2	-	7	1119	c.636G>A	c.(634-636)GAG>GAA	p.E212E	SPATA21_uc001ayl.1_RNA|SPATA21_uc010occ.1_Silent_p.E189E	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21	212	Potential.						calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		CCTCGGACTTCTCCCGGTTTT	0.612													24	54					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16894480	16894480	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16894480C>T	uc009vos.1	-	25	3773	c.2885G>A	c.(2884-2886)TGC>TAC	p.C962Y	NBPF1_uc009vot.1_Missense_Mutation_p.G345D|NBPF1_uc001ayz.1_Missense_Mutation_p.G345D|NBPF1_uc010oce.1_Missense_Mutation_p.G616D	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	962	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCACCTGGGACCTGTTGCCTC	0.438													37	436					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16895655	16895655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16895655G>A	uc009vos.1	-	23	3415	c.2527C>T	c.(2527-2529)CCT>TCT	p.P843S	NBPF1_uc009vot.1_Missense_Mutation_p.P301S|NBPF1_uc001ayz.1_Missense_Mutation_p.P301S|NBPF1_uc010oce.1_Missense_Mutation_p.P572S	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	843	NBPF 4.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		AACATTTCAGGAGGAATTGAG	0.512													27	391					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16895700	16895700	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16895700G>A	uc009vos.1	-	23	3370	c.2482C>T	c.(2482-2484)CCC>TCC	p.P828S	NBPF1_uc009vot.1_Missense_Mutation_p.P286S|NBPF1_uc001ayz.1_Missense_Mutation_p.P286S|NBPF1_uc010oce.1_Missense_Mutation_p.P557S	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	828	NBPF 4.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GACTCCTGGGGGACTTCCTCC	0.478													28	368					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16902777	16902777	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16902777G>A	uc009vos.1	-	19	2992	c.2104C>T	c.(2104-2106)CAA>TAA	p.Q702*	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Nonsense_Mutation_p.Q160*|NBPF1_uc010oce.1_Nonsense_Mutation_p.Q431*	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	702						cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		CTGAGCTTTTGGACAAGGTGC	0.562													28	624					0	0	1	0	0
CROCCL1	84809	broad.mit.edu	37	1	16952952	16952952	+	RNA	SNP	G	A	A	rs1762946	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16952952G>A	uc010ocf.1	-	1		c.43C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA|CROCCL1_uc001azg.1_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						TCTGCCCTCAGCTTGGTCACG	0.622													17	70					0	0	1	0	0
MST1P2	11209	broad.mit.edu	37	1	16975983	16975983	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:16975983C>T	uc010och.1	+	11		c.2005C>T			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GCTGTGTGGGCCCTCAGGCTC	0.602													12	40					0	0	1	0	0
ESPNP	284729	broad.mit.edu	37	1	17029467	17029467	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17029467C>T	uc001azn.1	-	6	899	c.785G>A	c.(784-786)GGG>GAG	p.G262E		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						GCTGGAAAGCCCTGGGGAGGC	0.537													6	36					0	0	1	0	0
ESPNP	284729	broad.mit.edu	37	1	17046493	17046493	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17046493G>A	uc001azn.1	-	1	160	c.46C>T	c.(46-48)CCC>TCC	p.P16S		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CTCAGGGAGGGGAAGTCTCCT	0.632													13	153					0	0	1	0	0
MST1P9	11223	broad.mit.edu	37	1	17085016	17085016	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17085016G>C	uc010ock.1	-	11	1459	c.1459C>G	c.(1459-1461)CGC>GGC	p.R487G	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.R61G	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CCAGCCACGCGCAGCTTGGAA	0.602													10	116					0	0	1	0	0
MST1P9	11223	broad.mit.edu	37	1	17086870	17086870	+	Missense_Mutation	SNP	T	C	C	rs114170948	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17086870T>C	uc010ock.1	-	4	454	c.454A>G	c.(454-456)AGC>GGC	p.S152G	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'Flank	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GATTTGATGCTGCAGCTCTGG	0.637													3	25					0	0	1	0	0
CROCC	9696	broad.mit.edu	37	1	17280797	17280797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17280797C>T	uc001azt.2	+	22	3335	c.3266C>T	c.(3265-3267)TCC>TTC	p.S1089F	CROCC_uc009voz.1_Missense_Mutation_p.S688F|CROCC_uc001azu.2_Missense_Mutation_p.S392F	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	1089					cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		GCCACCATCTCCCTGGAGATG	0.627													37	97					0	0	1	0	0
ATP13A2	23400	broad.mit.edu	37	1	17318747	17318748	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17318747_17318748GG>AA	uc001baa.2	-	18	2185_2186	c.1995_1996CC>TT	c.(1993-1998)AACCCC>AATTCC	p.P666S	ATP13A2_uc001azz.1_5'Flank|ATP13A2_uc001bab.2_Missense_Mutation_p.P661S|ATP13A2_uc001bac.2_Missense_Mutation_p.P661S	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	666	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		CCTGTCTCGGGGTTGCAGAGCC	0.673													16	25					0	0	1	0	0
PADI2	11240	broad.mit.edu	37	1	17405782	17405782	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17405782G>A	uc001baf.2	-	11	1369	c.1287C>T	c.(1285-1287)ATC>ATT	p.I429I	PADI2_uc010ocm.1_Silent_p.I313I|PADI2_uc001bag.1_Silent_p.I429I	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	429					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	TCCCGATGAGGATGCGGCCAA	0.582													14	51					0	0	1	0	0
PADI2	11240	broad.mit.edu	37	1	17422449	17422449	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17422449C>T	uc001baf.2	-	4	448	c.366G>A	c.(364-366)GTG>GTA	p.V122V	PADI2_uc010ocm.1_Silent_p.V122V|PADI2_uc001bag.1_Silent_p.V122V	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	122					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	GGTCTGCGTCCACATCCAGGG	0.602													50	109					0	0	1	0	0
PADI1	29943	broad.mit.edu	37	1	17531718	17531718	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17531718C>T	uc001bah.1	+	1	98	c.6C>T	c.(4-6)GCC>GCT	p.A2A		NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	2					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	ACAGGATGGCCCCAAAGAGAG	0.587													12	24					0	0	1	0	0
PADI1	29943	broad.mit.edu	37	1	17550869	17550869	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17550869C>T	uc001bah.1	+	4	446	c.354C>T	c.(352-354)TCC>TCT	p.S118S		NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	118					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	CAGATATTTCCCTTGAGGTTG	0.592													11	23					0	0	1	0	0
PADI1	29943	broad.mit.edu	37	1	17559460	17559460	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17559460C>T	uc001bah.1	+	11	1400	c.1308C>T	c.(1306-1308)TTC>TTT	p.F436F	PADI1_uc010oco.1_5'Flank|PADI1_uc010ocp.1_5'Flank|PADI1_uc010ocq.1_5'Flank	NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	436					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	GGAGCAGCTTCCCCAAGTGAG	0.657													9	11					0	0	1	0	0
PADI3	51702	broad.mit.edu	37	1	17588655	17588655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17588655G>A	uc001bai.2	+	3	341	c.301G>A	c.(301-303)GAG>AAG	p.E101K		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	101					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CTCCAGCCATGAGCCTCTGCC	0.547													15	29					0	0	1	0	0
PADI3	51702	broad.mit.edu	37	1	17592160	17592160	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17592160C>T	uc001bai.2	+	4	393	c.353C>T	c.(352-354)TCT>TTT	p.S118F		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	118					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GCAGACATCTCTCTGGATTGC	0.567													40	84					0	0	1	0	0
PADI3	51702	broad.mit.edu	37	1	17596843	17596843	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17596843C>T	uc001bai.2	+	7	808	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	256					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GCCTGTCCTTCCCTGATGCCG	0.567													31	65					0	0	1	0	0
PADI3	51702	broad.mit.edu	37	1	17599924	17599924	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17599924C>T	uc001bai.2	+	10	1177	c.1137C>T	c.(1135-1137)TTC>TTT	p.F379F		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	379					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TGCAGGATTTCCCTTACAAAA	0.617													21	34					0	0	1	0	0
PADI3	51702	broad.mit.edu	37	1	17603053	17603053	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17603053C>T	uc001bai.2	+	12	1387	c.1347C>T	c.(1345-1347)TTC>TTT	p.F449F		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	449					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TGCGGGACTTCCTCCATGCCC	0.552													20	80					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17657536	17657537	+	Missense_Mutation	DNP	CC	TT	TT	rs77182432	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17657536_17657537CC>TT	uc001baj.2	+	2	193_194	c.165_166CC>TT	c.(163-168)GGCCCT>GGTTCT	p.P56S	PADI4_uc009vpc.2_Missense_Mutation_p.P56S	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	56					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	TTGCCCACGGCCCTCCAGCCAA	0.599													23	45					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17668547	17668547	+	Silent	SNP	C	T	T	rs138788718	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17668547C>T	uc001baj.2	+	7	790	c.762C>T	c.(760-762)CTC>CTT	p.L254L	PADI4_uc009vpc.2_Silent_p.L254L	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	254					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	TGGAGGCCCTCGCTTTCCCGG	0.617													21	54					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17668875	17668875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17668875C>T	uc001baj.2	+	8	941	c.913C>T	c.(913-915)CCG>TCG	p.P305S	PADI4_uc009vpc.2_Missense_Mutation_p.P305S	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	305					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CACCCAGCCCCCGCAGGAGGT	0.642													5	57					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17668880	17668880	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17668880G>A	uc001baj.2	+	8	946	c.918G>A	c.(916-918)CAG>CAA	p.Q306Q	PADI4_uc009vpc.2_Silent_p.Q306Q	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	306					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	AGCCCCCGCAGGAGGTGTACG	0.642													15	43					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17682618	17682618	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17682618G>A	uc001baj.2	+	12	1479	c.1451G>A	c.(1450-1452)AGG>AAG	p.R484K		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	484					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	GCACCCGACAGGAAGGTACAG	0.592													14	46					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17690098	17690098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17690098G>A	uc001baj.2	+	16	1868	c.1840G>A	c.(1840-1842)GAG>AAG	p.E614K		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	614					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CTGCCTGGAGGAGAAGGTGTG	0.617													11	24					0	0	1	0	0
PADI6	353238	broad.mit.edu	37	1	17721594	17721594	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17721594G>A	uc001bak.1	+	13	1485	c.1485G>A	c.(1483-1485)GAG>GAA	p.E495E		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	487					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	ACAAGAATGAGGGCAAAAAGG	0.512													34	90					0	0	1	0	0
RCC2	55920	broad.mit.edu	37	1	17739641	17739641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17739641G>A	uc001bal.2	-	9	1288	c.1241C>T	c.(1240-1242)TCC>TTC	p.S414F	RCC2_uc001bam.2_Missense_Mutation_p.S414F	NM_001136204	NP_001129676	Q9P258	RCC2_HUMAN	regulator of chromosome condensation 2	414	RCC1 6.				cell division|mitotic prometaphase	chromosome, centromeric region|cytosol|microtubule|nucleolus|spindle					0		Colorectal(325;0.000147)|Breast(348;0.00122)|Renal(390;0.00145)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;7.69e-06)|COAD - Colon adenocarcinoma(227;1.19e-05)|Kidney(64;0.000189)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.0135)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)		AGATTCACGGGAGGTGTTGGT	0.542													10	28					0	0	1	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	17953868	17953868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:17953868C>T	uc001ban.2	+	15	1613	c.1454C>T	c.(1453-1455)TCG>TTG	p.S485L	ARHGEF10L_uc009vpe.1_Missense_Mutation_p.S446L|ARHGEF10L_uc001bao.2_Missense_Mutation_p.S446L|ARHGEF10L_uc001bap.2_Missense_Mutation_p.S446L|ARHGEF10L_uc010ocr.1_Missense_Mutation_p.S243L|ARHGEF10L_uc001baq.2_Missense_Mutation_p.S251L|ARHGEF10L_uc010ocs.1_Missense_Mutation_p.S263L|ARHGEF10L_uc001bar.2_Missense_Mutation_p.S193L|ARHGEF10L_uc009vpf.2_RNA	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	485	DH.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		GACAGGCTGTCGCTGCAGCTG	0.627													18	60					0	0	1	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	18014197	18014197	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18014197C>T	uc001ban.2	+	27	3298	c.3139C>T	c.(3139-3141)CTG>TTG	p.L1047L	ARHGEF10L_uc009vpe.1_Silent_p.L1008L|ARHGEF10L_uc001bao.2_Silent_p.L1008L|ARHGEF10L_uc001bap.2_Silent_p.L1003L|ARHGEF10L_uc001baq.2_Silent_p.L808L|ARHGEF10L_uc010ocs.1_Silent_p.L820L|ARHGEF10L_uc001bar.2_Silent_p.L750L|ARHGEF10L_uc009vpf.2_RNA	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	1047					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		CCTGGAGCATCTGCAAGAGAT	0.642													11	49					0	0	1	0	0
ACTL8	81569	broad.mit.edu	37	1	18149669	18149669	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18149669G>A	uc001bat.2	+	2	382	c.166G>A	c.(166-168)GAC>AAC	p.D56N		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	56						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CCTGGGCATCGACATTTGCCA	0.572													56	106					0	0	1	0	0
ACTL8	81569	broad.mit.edu	37	1	18152433	18152433	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18152433G>A	uc001bat.2	+	3	736	c.520G>A	c.(520-522)GAG>AAG	p.E174K		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	174						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CAAGACGCTGGAGTTCGCCGG	0.617											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	26					0	0	1	0	0
ACTL8	81569	broad.mit.edu	37	1	18152586	18152586	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18152586C>T	uc001bat.2	+	3	889	c.673C>T	c.(673-675)CGT>TGT	p.R225C		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	225						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CCTGGACTTTCGTGAGAGGCA	0.597											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	75					0	0	1	0	0
ACTL8	81569	broad.mit.edu	37	1	18152803	18152804	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18152803_18152804CC>TT	uc001bat.2	+	3	1106_1107	c.890_891CC>TT	c.(889-891)GCC>GTT	p.A297V		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	297						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CACGTGATGGCCTGCGGGGGCA	0.649											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	66					0	0	1	0	0
IGSF21	84966	broad.mit.edu	37	1	18554486	18554486	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18554486G>A	uc001bau.1	+	2	548	c.165G>A	c.(163-165)CGG>CGA	p.R55R		NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	55	Ig-like 1.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		GGCGCATGCGGGAGATCGTGT	0.582													35	66					0	0	1	0	0
IGSF21	84966	broad.mit.edu	37	1	18691869	18691869	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18691869C>T	uc001bau.1	+	6	1076	c.693C>T	c.(691-693)CTC>CTT	p.L231L	IGSF21_uc001bav.1_Silent_p.L52L	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	231						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CACTGTCCCTCCTGGACGCCG	0.652													40	111					0	0	1	0	0
IGSF21	84966	broad.mit.edu	37	1	18702854	18702854	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18702854G>A	uc001bau.1	+	7	1449	c.1066G>A	c.(1066-1068)GGG>AGG	p.G356R	IGSF21_uc001bav.1_Missense_Mutation_p.G177R	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	356	Ig-like 2.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		AGCCCGGGTAGGGGACACAGT	0.587													61	189					0	0	1	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18807896	18807896	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18807896C>T	uc001bax.2	+	1	473	c.421C>T	c.(421-423)CCC>TCC	p.P141S	KLHDC7A_uc009vpg.2_5'UTR	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	141						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TCCTTGCTGCCCCAGCCAGGA	0.642													20	47					0	0	1	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808058	18808058	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18808058G>A	uc001bax.2	+	1	635	c.583G>A	c.(583-585)GAG>AAG	p.E195K	KLHDC7A_uc009vpg.2_5'UTR	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	195						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TAAACCCCGTGAGCATCCAGG	0.612													17	51					0	0	1	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809042	18809042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:18809042C>T	uc001bax.2	+	1	1619	c.1567C>T	c.(1567-1569)CGC>TGC	p.R523C	KLHDC7A_uc009vpg.2_Missense_Mutation_p.R305C	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	523	Kelch 2.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCCGCTGGCTCGCATGCCCCC	0.672													38	100					0	0	1	0	0
PAX7	5081	broad.mit.edu	37	1	19018322	19018322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19018322C>T	uc001bay.2	+	5	1259	c.661C>T	c.(661-663)CGG>TGG	p.R221W	PAX7_uc001baz.2_Missense_Mutation_p.R219W|PAX7_uc010oct.1_Missense_Mutation_p.R221W	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	221	Homeobox.				anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		GCGACGCAGTCGGACCACATT	0.637			T	FOXO1A	alveolar rhabdomyosarcoma								7	18					0	0	1	0	0
PAX7	5081	broad.mit.edu	37	1	19018374	19018374	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19018374G>A	uc001bay.2	+	5	1311	c.713G>A	c.(712-714)AGG>AAG	p.R238K	PAX7_uc001baz.2_Missense_Mutation_p.R236K|PAX7_uc010oct.1_Missense_Mutation_p.R238K	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	238	Homeobox.				anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		GCCTTTGAGAGGACCCACTAC	0.637			T	FOXO1A	alveolar rhabdomyosarcoma								7	24					0	0	1	0	0
PAX7	5081	broad.mit.edu	37	1	19062482	19062482	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19062482C>T	uc001bay.2	+	8	2110	c.1512C>T	c.(1510-1512)TCC>TCT	p.S504S	PAX7_uc001baz.2_Silent_p.S502S|PAX7_uc010oct.1_Intron	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	504					anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		ggggaatgtccatttcacaga	0.229			T	FOXO1A	alveolar rhabdomyosarcoma								11	12					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19166658	19166658	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19166658G>A	uc001bba.1	-	6	1956	c.1955C>T	c.(1954-1956)TCT>TTT	p.S652F		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	652	Helical; Name=3; (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	GATCTGGAAAGAACGCACGGC	0.617													55	114					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19176015	19176015	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19176015G>A	uc001bba.1	-	4	1288	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	429	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CCAGGAGAGTGAAGTTGACCT	0.562													10	50					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19183983	19183983	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19183983G>A	uc001bba.1	-	2	326	c.325C>T	c.(325-327)CAG>TAG	p.Q109*		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	109	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	AGCACCGGCTGGACATTGTTG	0.552													32	91					0	0	1	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19209673	19209673	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19209673G>A	uc001bbb.2	-	7	899	c.623C>T	c.(622-624)TCG>TTG	p.S208L	ALDH4A1_uc010ocu.1_Missense_Mutation_p.S148L|ALDH4A1_uc001bbc.2_Missense_Mutation_p.S208L	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	208					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	GTTAAAGGGCGAGATGGCCGC	0.672													32	65					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19404516	19404516	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19404516G>A	uc001bbi.2	-	104	15282	c.15278C>T	c.(15277-15279)TCC>TTC	p.S5093F	UBR4_uc001bbe.1_5'Flank|UBR4_uc001bbf.2_5'UTR|UBR4_uc010ocv.1_Missense_Mutation_p.S616F|UBR4_uc009vph.2_Missense_Mutation_p.S727F|UBR4_uc010ocw.1_Missense_Mutation_p.S757F|UBR4_uc001bbg.2_Missense_Mutation_p.S804F|UBR4_uc001bbh.2_Missense_Mutation_p.S802F	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	5093					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		AAAGAGAAGGGAAGAACGGTA	0.473													13	29					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19428056	19428056	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19428056G>A	uc001bbi.2	-	88	12985	c.12981C>T	c.(12979-12981)ACC>ACT	p.T4327T	UBR4_uc010ocv.1_5'Flank|UBR4_uc009vph.2_5'Flank|UBR4_uc010ocw.1_Silent_p.T18T|UBR4_uc001bbg.2_Silent_p.T38T|UBR4_uc001bbh.2_Silent_p.T36T	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	4327					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TGAACACCGGGGTCCGGTAGT	0.537													27	120					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19480431	19480431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19480431G>A	uc001bbi.2	-	45	6465	c.6461C>T	c.(6460-6462)TCC>TTC	p.S2154F	UBR4_uc001bbk.1_5'Flank|UBR4_uc001bbl.1_Missense_Mutation_p.S91F|UBR4_uc001bbm.1_Missense_Mutation_p.S1366F	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	2154					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GCCACCATTGGAACTGCAGAC	0.493													34	79					0	0	1	0	0
AKR7L	246181	broad.mit.edu	37	1	19595801	19595801	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19595801G>A	uc010ocx.1	-	6	669	c.669C>T	c.(667-669)TTC>TTT	p.F223F	AKR7L_uc010ocy.1_Intron	NM_201252	NP_957704			aflatoxin B1 aldehyde reductase 3 isoform 1												0						GAGTCCCAAAGAAGCGGCCCA	0.592													26	84					0	0	1	0	0
AKR7A2	8574	broad.mit.edu	37	1	19632552	19632552	+	Missense_Mutation	SNP	G	A	A	rs79772073		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19632552G>A	uc001bbw.2	-	6	900	c.878C>T	c.(877-879)TCG>TTG	p.S293L	AKR7A2_uc001bbx.2_Missense_Mutation_p.S258L	NM_003689	NP_003680	O43488	ARK72_HUMAN	aldo-keto reductase family 7, member A2	293					carbohydrate metabolic process|cellular aldehyde metabolic process	Golgi apparatus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00461)|BRCA - Breast invasive adenocarcinoma(304;1.83e-05)|Kidney(64;0.000167)|GBM - Glioblastoma multiforme(114;0.00115)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GAGGGCAGCCGAGGTCACACT	0.632													22	74					0	0	1	0	0
AKR7A2	8574	broad.mit.edu	37	1	19634676	19634676	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19634676G>A	uc001bbw.2	-	3	589	c.567C>T	c.(565-567)GGC>GGT	p.G189G	AKR7A2_uc001bbx.2_Intron|AKR7A2_uc009vpi.1_Silent_p.G189G	NM_003689	NP_003680	O43488	ARK72_HUMAN	aldo-keto reductase family 7, member A2	189					carbohydrate metabolic process|cellular aldehyde metabolic process	Golgi apparatus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00461)|BRCA - Breast invasive adenocarcinoma(304;1.83e-05)|Kidney(64;0.000167)|GBM - Glioblastoma multiforme(114;0.00115)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCAGGATCCAGCCATTGCTCT	0.612													26	71					0	0	1	0	0
AKR7A2	8574	broad.mit.edu	37	1	19635037	19635037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19635037G>A	uc001bbw.2	-	2	420	c.398C>T	c.(397-399)CCC>CTC	p.P133L	AKR7A2_uc001bbx.2_Missense_Mutation_p.P133L|AKR7A2_uc009vpi.1_Missense_Mutation_p.P133L	NM_003689	NP_003680	O43488	ARK72_HUMAN	aldo-keto reductase family 7, member A2	133					carbohydrate metabolic process|cellular aldehyde metabolic process	Golgi apparatus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00461)|BRCA - Breast invasive adenocarcinoma(304;1.83e-05)|Kidney(64;0.000167)|GBM - Glioblastoma multiforme(114;0.00115)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GTCCACTTGGGGACACTGCAG	0.602													13	72					0	0	1	0	0
NBL1	4681	broad.mit.edu	37	1	19981573	19981573	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:19981573C>T	uc001bck.1	+	2	202	c.47C>T	c.(46-48)GCT>GTT	p.A16V	NBL1_uc009vpl.1_Missense_Mutation_p.A17V|NBL1_uc001bcj.1_Missense_Mutation_p.A52V|NBL1_uc009vpm.1_Missense_Mutation_p.A17V	NM_005380	NP_005371	P41271	NBL1_HUMAN	neuroblastoma, suppression of tumorigenicity 1 2	16						extracellular region				ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00043)|Ovarian(437;0.00373)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;5.9e-05)|Kidney(64;0.000173)|GBM - Glioblastoma multiforme(114;0.0012)|KIRC - Kidney renal clear cell carcinoma(64;0.0026)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		ATGCTACTGGCTGCCCCACCA	0.627													8	24					0	0	1	0	0
TMCO4	255104	broad.mit.edu	37	1	20107104	20107104	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20107104G>A	uc001bcn.2	-	4	390	c.148C>T	c.(148-150)CTG>TTG	p.L50L	TMCO4_uc001bcm.2_Silent_p.L50L|TMCO4_uc001bco.1_Silent_p.L50L|TMCO4_uc001bcp.1_Silent_p.L50L|TMCO4_uc009vpn.1_Silent_p.L50L|TMCO4_uc001bcq.1_Silent_p.L50L	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	50						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		AACTGGGACAGGGAGATGCCA	0.592													11	37					0	0	1	0	0
TMCO4	255104	broad.mit.edu	37	1	20107106	20107106	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20107106G>A	uc001bcn.2	-	4	388	c.146C>T	c.(145-147)TCC>TTC	p.S49F	TMCO4_uc001bcm.2_Missense_Mutation_p.S49F|TMCO4_uc001bco.1_Missense_Mutation_p.S49F|TMCO4_uc001bcp.1_Missense_Mutation_p.S49F|TMCO4_uc009vpn.1_Missense_Mutation_p.S49F|TMCO4_uc001bcq.1_Missense_Mutation_p.S49F	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	49						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		CTGGGACAGGGAGATGCCACA	0.592													15	33					0	0	1	0	0
RNF186	54546	broad.mit.edu	37	1	20140998	20140998	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20140998G>A	uc001bcr.2	-	1	774	c.597C>T	c.(595-597)CTC>CTT	p.L199L		NM_019062	NP_061935	Q9NXI6	RN186_HUMAN	ring finger protein 186	199	Helical; (Potential).					integral to membrane	zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;7.77e-05)|Kidney(64;0.000162)|GBM - Glioblastoma multiforme(114;0.00036)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGGTGCTGGGGAGACAGCAGA	0.592													9	44					0	0	1	0	0
RNF186	54546	broad.mit.edu	37	1	20141139	20141139	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20141139G>A	uc001bcr.2	-	1	633	c.456C>T	c.(454-456)GCC>GCT	p.A152A		NM_019062	NP_061935	Q9NXI6	RN186_HUMAN	ring finger protein 186	152						integral to membrane	zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;7.77e-05)|Kidney(64;0.000162)|GBM - Glioblastoma multiforme(114;0.00036)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCAGGCGCCGGGCTGCCACGT	0.607													28	141					0	0	1	0	0
RNF186	54546	broad.mit.edu	37	1	20141286	20141286	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20141286C>T	uc001bcr.2	-	1	486	c.309G>A	c.(307-309)GAG>GAA	p.E103E		NM_019062	NP_061935	Q9NXI6	RN186_HUMAN	ring finger protein 186	103						integral to membrane	zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;7.77e-05)|Kidney(64;0.000162)|GBM - Glioblastoma multiforme(114;0.00036)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCACCACCGCCTCATGGTCGC	0.672													15	71					0	0	1	0	0
RNF186	54546	broad.mit.edu	37	1	20141519	20141519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20141519G>A	uc001bcr.2	-	1	253	c.76C>T	c.(76-78)CCT>TCT	p.P26S		NM_019062	NP_061935	Q9NXI6	RN186_HUMAN	ring finger protein 186	26						integral to membrane	zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;7.77e-05)|Kidney(64;0.000162)|GBM - Glioblastoma multiforme(114;0.00036)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCCCCAGCAGGGGCCACAGCG	0.652													36	68					0	0	1	0	0
PLA2G2E	30814	broad.mit.edu	37	1	20249114	20249114	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20249114C>T	uc001bct.1	-	2	233	c.175G>A	c.(175-177)GAC>AAC	p.D59N		NM_014589	NP_055404	Q9NZK7	PA2GE_HUMAN	phospholipase A2, group IIE precursor	59					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|GBM - Glioblastoma multiforme(114;0.000146)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCTCACCAGTCAGTCTGGTCC	0.627													25	59					0	0	1	0	0
PLA2G2D	26279	broad.mit.edu	37	1	20440676	20440676	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20440676C>T	uc001bcz.2	-	4	386	c.369G>A	c.(367-369)CTG>CTA	p.L123L	PLA2G2D_uc009vpo.2_RNA	NM_012400	NP_036532	Q9UNK4	PA2GD_HUMAN	phospholipase A2, group IID precursor	123					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.000175)|GBM - Glioblastoma multiforme(114;0.000798)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGTAGGTGTCCAGGTTGCGCT	0.622										Multiple Myeloma(11;0.12)			16	51					0	0	1	0	0
PLA2G2F	64600	broad.mit.edu	37	1	20470032	20470032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20470032G>A	uc009vpp.1	+	3	361	c.263G>A	c.(262-264)GGT>GAT	p.G88D		NM_022819	NP_073730	Q9BZM2	PA2GF_HUMAN	phospholipase A2, group IIF	45					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.000524)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		GTGGGCTACGGTTGCTACTGT	0.637													16	73					0	0	1	0	0
PLA2G2F	64600	broad.mit.edu	37	1	20474748	20474748	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20474748C>T	uc009vpp.1	+	5	588	c.490C>T	c.(490-492)CTC>TTC	p.L164F		NM_022819	NP_073730	Q9BZM2	PA2GF_HUMAN	phospholipase A2, group IIF	121					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.000524)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		GGTTCTGTGCCTCATGAACCA	0.557													14	116					0	0	1	0	0
PLA2G2F	64600	broad.mit.edu	37	1	20474889	20474889	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20474889C>T	uc009vpp.1	+	5	729	c.631C>T	c.(631-633)CCC>TCC	p.P211S		NM_022819	NP_073730	Q9BZM2	PA2GF_HUMAN	phospholipase A2, group IIF	168					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.000524)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		CCCCGCCCCTCCCTAGAGCCT	0.657													9	48					0	0	1	0	0
UBXN10	127733	broad.mit.edu	37	1	20517739	20517739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20517739G>A	uc001bdb.2	+	2	769	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_152376	NP_689589	Q96LJ8	UBX10_HUMAN	UBX domain protein 10	229	UBX.									ovary(1)	1						TGCTGTGGCCGAACAGAAAAA	0.488													38	76					0	0	1	0	0
CDA	978	broad.mit.edu	37	1	20915648	20915649	+	Missense_Mutation	DNP	CC	TT	TT	rs140821931		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20915648_20915649CC>TT	uc001bdk.2	+	1	205_206	c.26_27CC>TT	c.(25-27)ACC>ATT	p.T9I	CDA_uc001bdl.2_RNA|CDA_uc009vpv.2_RNA	NM_001785	NP_001776	P32320	CDD_HUMAN	cytidine deaminase	9					cell surface receptor linked signaling pathway|cytosine metabolic process|negative regulation of cell growth|negative regulation of nucleotide metabolic process|protein homotetramerization|pyrimidine nucleoside salvage	cytosol|extracellular region	cytidine deaminase activity|nucleoside binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Lung NSC(340;1.75e-08)|all_lung(284;5.99e-08)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|GBM - Glioblastoma multiforme(114;1.06e-08)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000148)|Kidney(64;0.000184)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.199)	Azacitidine(DB00928)|Capecitabine(DB01101)|Cytarabine(DB00987)|Gemcitabine(DB00441)	CCTGCCTGCACCCTGAAGCCTG	0.658													13	74					0	0	1	0	0
CDA	978	broad.mit.edu	37	1	20915652	20915652	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20915652G>A	uc001bdk.2	+	1	209	c.30G>A	c.(28-30)CTG>CTA	p.L10L	CDA_uc001bdl.2_RNA|CDA_uc009vpv.2_RNA	NM_001785	NP_001776	P32320	CDD_HUMAN	cytidine deaminase	10					cell surface receptor linked signaling pathway|cytosine metabolic process|negative regulation of cell growth|negative regulation of nucleotide metabolic process|protein homotetramerization|pyrimidine nucleoside salvage	cytosol|extracellular region	cytidine deaminase activity|nucleoside binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Lung NSC(340;1.75e-08)|all_lung(284;5.99e-08)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|GBM - Glioblastoma multiforme(114;1.06e-08)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000148)|Kidney(64;0.000184)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.199)	Azacitidine(DB00928)|Capecitabine(DB01101)|Cytarabine(DB00987)|Gemcitabine(DB00441)	CCTGCACCCTGAAGCCTGAGT	0.652													13	72					0	0	1	0	0
CDA	978	broad.mit.edu	37	1	20915772	20915772	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20915772C>T	uc001bdk.2	+	1	329	c.150C>T	c.(148-150)TTC>TTT	p.F50F	CDA_uc001bdl.2_RNA|CDA_uc009vpv.2_RNA	NM_001785	NP_001776	P32320	CDD_HUMAN	cytidine deaminase	50					cell surface receptor linked signaling pathway|cytosine metabolic process|negative regulation of cell growth|negative regulation of nucleotide metabolic process|protein homotetramerization|pyrimidine nucleoside salvage	cytosol|extracellular region	cytidine deaminase activity|nucleoside binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Lung NSC(340;1.75e-08)|all_lung(284;5.99e-08)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|GBM - Glioblastoma multiforme(114;1.06e-08)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000148)|Kidney(64;0.000184)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.199)	Azacitidine(DB00928)|Capecitabine(DB01101)|Cytarabine(DB00987)|Gemcitabine(DB00441)	GGAGAATCTTCAAAGGTAAAG	0.622													12	36					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	20998468	20998468	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20998468G>A	uc001bdr.3	-	12	2803	c.2685C>T	c.(2683-2685)ATC>ATT	p.I895I	KIF17_uc001bdp.3_Silent_p.I173I|KIF17_uc001bdq.3_Silent_p.I173I|KIF17_uc009vpx.2_Silent_p.I265I|KIF17_uc001bds.3_Silent_p.I895I	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	895					microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		CGGGATGTGGGATCTTCCAGA	0.572													14	103					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	20998675	20998675	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:20998675C>T	uc001bdr.3	-	12	2596	c.2478G>A	c.(2476-2478)GAG>GAA	p.E826E	KIF17_uc001bdp.3_Silent_p.E104E|KIF17_uc001bdq.3_Silent_p.E104E|KIF17_uc009vpx.2_Silent_p.E196E|KIF17_uc001bds.3_Silent_p.E826E	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	826	Potential.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		TGATCTCCACCTCTGCTGCCC	0.557													9	27					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	21016731	21016731	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21016731G>A	uc001bdr.3	-	7	1449	c.1331C>T	c.(1330-1332)TCA>TTA	p.S444L	KIF17_uc009vpx.2_5'UTR|KIF17_uc001bds.3_Missense_Mutation_p.S444L	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	444	Potential.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		GACGTCATATGAGTTGCGCAT	0.627													22	56					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	21031193	21031193	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21031193C>T	uc001bdr.3	-	5	988	c.870G>A	c.(868-870)TCG>TCA	p.S290S	KIF17_uc001bds.3_Silent_p.S290S	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	290					microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		GCGTCAGCTTCGAGTCACGGT	0.617													26	67					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	21036173	21036173	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21036173G>A	uc001bdr.3	-	4	747	c.629C>T	c.(628-630)TCG>TTG	p.S210L	KIF17_uc001bds.3_Missense_Mutation_p.S210L	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	210	Kinesin-motor.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		GATGGAGTGCGAGCGTGAGGA	0.592													11	95					0	0	1	0	0
EIF4G3	8672	broad.mit.edu	37	1	21268095	21268095	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21268095G>A	uc001bec.2	-	9	1640	c.1384C>T	c.(1384-1386)CTT>TTT	p.L462F	EIF4G3_uc010odi.1_Missense_Mutation_p.L66F|EIF4G3_uc010odj.1_Missense_Mutation_p.L461F|EIF4G3_uc009vpz.2_Intron|EIF4G3_uc001bed.2_Missense_Mutation_p.L462F|EIF4G3_uc001bef.2_Missense_Mutation_p.L461F|EIF4G3_uc001bee.2_Missense_Mutation_p.L468F|EIF4G3_uc001beg.2_Missense_Mutation_p.L461F|EIF4G3_uc010odk.1_Missense_Mutation_p.L462F|EIF4G3_uc001beh.2_Missense_Mutation_p.L473F	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	462	Potential.				interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		TCTTCACTAAGGCAAGTTCTT	0.438													65	230					0	0	1	0	0
EIF4G3	8672	broad.mit.edu	37	1	21306909	21306909	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21306909G>A	uc001bec.2	-	5	499	c.243C>T	c.(241-243)CCC>CCT	p.P81P	EIF4G3_uc010odj.1_Silent_p.P81P|EIF4G3_uc009vpz.2_Silent_p.P81P|EIF4G3_uc001bed.2_Silent_p.P81P|EIF4G3_uc001bef.2_Silent_p.P81P|EIF4G3_uc001bee.2_Silent_p.P88P|EIF4G3_uc001beg.2_Silent_p.P81P|EIF4G3_uc010odk.1_Silent_p.P81P|EIF4G3_uc001beh.2_Silent_p.P92P	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	81					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		ATTGTTGGGGGGGCCCAACAT	0.433													9	29					0	0	1	0	0
ECE1	1889	broad.mit.edu	37	1	21546459	21546459	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21546459C>T	uc001bek.2	-	19	2377	c.2302G>A	c.(2302-2304)GAA>AAA	p.E768K	ECE1_uc001bem.2_Missense_Mutation_p.E752K|ECE1_uc001bej.2_Missense_Mutation_p.E756K|ECE1_uc001bei.2_Missense_Mutation_p.E765K|ECE1_uc010odl.1_Missense_Mutation_p.E736K	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	768	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		TACCAGACTTCGCACTTGTGA	0.617													23	54					0	0	1	0	0
ECE1	1889	broad.mit.edu	37	1	21548263	21548263	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21548263G>A	uc001bek.2	-	18	2188	c.2113C>T	c.(2113-2115)CTC>TTC	p.L705F	ECE1_uc001bem.2_Missense_Mutation_p.L689F|ECE1_uc001bej.2_Missense_Mutation_p.L693F|ECE1_uc001bei.2_Missense_Mutation_p.L702F|ECE1_uc010odl.1_Intron	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	705	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		AGGAAGAAGAGCTGGTTATTG	0.532													84	231					0	0	1	0	0
ECE1	1889	broad.mit.edu	37	1	21548335	21548335	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21548335C>T	uc001bek.2	-	18	2116	c.2041G>A	c.(2041-2043)GCT>ACT	p.A681T	ECE1_uc001bem.2_Missense_Mutation_p.A665T|ECE1_uc001bej.2_Missense_Mutation_p.A669T|ECE1_uc001bei.2_Missense_Mutation_p.A678T|ECE1_uc010odl.1_Intron	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	681	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		TTCTGGTAAGCCTGGGAGGAG	0.597													54	100					0	0	1	0	0
ECE1	1889	broad.mit.edu	37	1	21564648	21564648	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21564648G>A	uc001bek.2	-	11	1443	c.1368C>T	c.(1366-1368)TTC>TTT	p.F456F	ECE1_uc001bem.2_Silent_p.F440F|ECE1_uc001bej.2_Silent_p.F444F|ECE1_uc001bei.2_Silent_p.F453F|ECE1_uc010odl.1_Silent_p.F456F|ECE1_uc009vqa.1_Silent_p.F456F	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	456	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		TGTCCTCGGCGAAGGTTGCTT	0.542													23	58					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	21754289	21754289	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21754289G>A	uc001bep.1	-	1		c.12C>T								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		TCCAAGTCAAGAGCCAAGCCA	0.468													27	149					0	0	1	0	0
ALPL	249	broad.mit.edu	37	1	21903920	21903920	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21903920G>A	uc001bet.2	+	12	1611	c.1354G>A	c.(1354-1356)GAG>AAG	p.E452K	ALPL_uc010odn.1_Missense_Mutation_p.E400K|ALPL_uc010odo.1_Missense_Mutation_p.E397K|ALPL_uc010odp.1_Missense_Mutation_p.E375K|ALPL_uc001beu.3_Missense_Mutation_p.E452K	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	452			E -> K (in HOPS).		response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	CCTGCGCCACGAGACCCACGG	0.687													26	38					0	0	1	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21929377	21929377	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:21929377C>T	uc001bex.2	-	19	1716	c.1458G>A	c.(1456-1458)ACG>ACA	p.T486T	RAP1GAP_uc001bev.2_Silent_p.T571T|RAP1GAP_uc001bew.2_Silent_p.T550T|RAP1GAP_uc001bey.2_Silent_p.T512T	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	486					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		ACTTCTTCCTCGTGGGGCTCT	0.647													4	47					0	0	1	0	0
LDLRAD2	401944	broad.mit.edu	37	1	22140990	22140991	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22140990_22140991CC>TT	uc001bfg.1	+	2	372_373	c.185_186CC>TT	c.(184-186)ACC>ATT	p.T62I		NM_001013693	NP_001013715	Q5SZI1	LRAD2_HUMAN	low density lipoprotein receptor class A domain	62	Extracellular (Potential).					integral to membrane	receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.00166)|all_lung(284;0.00172)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;5.2e-26)|COAD - Colon adenocarcinoma(152;1.13e-05)|GBM - Glioblastoma multiforme(114;1.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00598)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)		GCTCCGGACACCGACTGCGGGC	0.728													8	47					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22157780	22157780	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22157780G>A	uc001bfj.2	-	84	11530	c.11490C>T	c.(11488-11490)ATC>ATT	p.I3830I	HSPG2_uc001bfi.2_5'Flank|HSPG2_uc009vqd.2_Silent_p.I3831I	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3830	Laminin G-like 1.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CATGGAAGACGATCTCCTCGC	0.677													17	71					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22157999	22157999	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22157999G>A	uc001bfj.2	-	83	11449	c.11409C>T	c.(11407-11409)GAC>GAT	p.D3803D	HSPG2_uc001bfi.2_5'Flank|HSPG2_uc009vqd.2_Silent_p.D3804D	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3803	Laminin G-like 1.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TGGCACCATAGTCAGGATAGC	0.627													14	66					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22182404	22182404	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22182404G>A	uc001bfj.2	-	45	5617	c.5577C>T	c.(5575-5577)GCC>GCT	p.A1859A	HSPG2_uc009vqd.2_Silent_p.A1860A	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	1859	Ig-like C2-type 3.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	AGGTGCCCGAGGCTGACAAGG	0.478													15	33					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22191364	22191364	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22191364G>A	uc001bfj.2	-	36	4638	c.4598C>T	c.(4597-4599)CCG>CTG	p.P1533L	HSPG2_uc009vqd.2_Missense_Mutation_p.P1534L	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	1533	Laminin EGF-like 9; second part.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GTAGCCTGGCGGGCAGCGGCA	0.687													4	22					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22205510	22205510	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22205510G>A	uc001bfj.2	-	18	2488	c.2448C>T	c.(2446-2448)TGC>TGT	p.C816C	HSPG2_uc009vqd.2_Silent_p.C817C	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	816	Laminin EGF-like 3.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CGATGTATGGGCAAGGGCAGG	0.537													19	27					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22211865	22211865	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22211865G>A	uc001bfj.2	-	10	1198	c.1158C>T	c.(1156-1158)TTC>TTT	p.F386F	HSPG2_uc009vqd.2_Silent_p.F386F	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	386	LDL-receptor class A 4.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CGTCACAGTGGAAGCTGGCTG	0.627													11	49					0	0	1	0	0
CELA3B	23436	broad.mit.edu	37	1	22303555	22303555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22303555C>T	uc001bfk.2	+	1	138	c.23C>T	c.(22-24)TCC>TTC	p.S8F	CELA3B_uc009vqf.2_Missense_Mutation_p.S7F	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	8					cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						CTGCTCAGTTCCCTCCTCCTT	0.527													86	230					0	0	1	0	0
CELA3B	23436	broad.mit.edu	37	1	22310278	22310278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22310278C>T	uc001bfk.2	+	5	569	c.454C>T	c.(454-456)CCC>TCC	p.P152S	CELA3B_uc009vqf.2_Intron	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	152	Peptidase S1.				cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						TGACATCCTTCCCAACGAGAC	0.622													33	107					0	0	1	0	0
CELA3B	23436	broad.mit.edu	37	1	22310748	22310748	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22310748C>T	uc001bfk.2	+	6	681	c.566C>T	c.(565-567)TCC>TTC	p.S189F	CELA3B_uc009vqf.2_Intron	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	189	Peptidase S1.				cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						GAACACTGCTCCAGGTGGAAC	0.607													33	61					0	0	1	0	0
CELA3B	23436	broad.mit.edu	37	1	22313149	22313149	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22313149C>T	uc001bfk.2	+	7	883	c.768C>T	c.(766-768)GTC>GTT	p.V256V	CELA3B_uc009vqf.2_Intron	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	256	Peptidase S1.				cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						TCACTCGAGTCTCCGCCTTCA	0.607													12	51					0	0	1	0	0
CELA3A	10136	broad.mit.edu	37	1	22332005	22332005	+	Silent	SNP	C	T	T	rs150719625		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22332005C>T	uc001bfl.2	+	3	214	c.195C>T	c.(193-195)CCC>CCT	p.P65P	CELA3B_uc009vqf.2_Silent_p.P64P	NM_005747	NP_005738	P09093	CEL3A_HUMAN	elastase 3A, pancreatic preproprotein	65	Peptidase S1.				cholesterol metabolic process|digestion|proteolysis		serine-type endopeptidase activity			haematopoietic_and_lymphoid_tissue(1)	1						TCATCGCCCCCGATTGGGTTG	0.617											OREG0013211	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	118					0	0	1	0	0
ZBTB40	9923	broad.mit.edu	37	1	22834550	22834550	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22834550C>T	uc001bft.2	+	8	1928	c.1417C>T	c.(1417-1419)CTC>TTC	p.L473F	ZBTB40_uc001bfu.2_Missense_Mutation_p.L473F|ZBTB40_uc009vqi.1_Missense_Mutation_p.L361F|ZBTB40_uc001bfv.1_Missense_Mutation_p.L102F	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	473					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		TCATGAAAACCTCTCTGAGAT	0.323													31	108					0	0	1	0	0
ZBTB40	9923	broad.mit.edu	37	1	22838343	22838343	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22838343C>T	uc001bft.2	+	12	2688	c.2177C>T	c.(2176-2178)TCA>TTA	p.S726L	ZBTB40_uc001bfu.2_Missense_Mutation_p.S726L|ZBTB40_uc009vqi.1_Missense_Mutation_p.S614L|ZBTB40_uc001bfv.1_Missense_Mutation_p.S355L	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	726					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		AAAGAGGCTTCAGCCTCCCCA	0.527													13	43					0	0	1	0	0
EPHA8	2046	broad.mit.edu	37	1	22902738	22902738	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22902738C>T	uc001bfx.1	+	3	313	c.188C>T	c.(187-189)TCC>TTC	p.S63F	EPHA8_uc001bfw.2_Missense_Mutation_p.S63F	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	63	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GTGGACGAGTCCTTCCAGCCC	0.612													46	128					0	0	1	0	0
EPHA8	2046	broad.mit.edu	37	1	22915379	22915379	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22915379C>T	uc001bfx.1	+	5	1120	c.995C>T	c.(994-996)CCA>CTA	p.P332L	EPHA8_uc001bfw.2_Missense_Mutation_p.P332L	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	332	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCCTCGGCACCAGTGAACCTG	0.587													22	48					0	0	1	0	0
EPHA8	2046	broad.mit.edu	37	1	22922660	22922660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22922660G>A	uc001bfx.1	+	9	1884	c.1759G>A	c.(1759-1761)GGA>AGA	p.G587R		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	587	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CTATCAGAATGGACAGGGTGA	0.652													10	39					0	0	1	0	0
EPHA8	2046	broad.mit.edu	37	1	22927561	22927561	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22927561G>A	uc001bfx.1	+	15	2834	c.2709G>A	c.(2707-2709)AGG>AGA	p.R903R		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	903	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		AGAGTCTCAGGGCCACCGCCA	0.637													25	45					0	0	1	0	0
EPHA8	2046	broad.mit.edu	37	1	22927862	22927862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22927862C>T	uc001bfx.1	+	16	2924	c.2799C>T	c.(2797-2799)CTC>CTT	p.L933L		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	933	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GTGGGGGCCTCACCGTGGGGG	0.677													15	63					0	0	1	0	0
C1QA	712	broad.mit.edu	37	1	22965719	22965719	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22965719C>T	uc001bfy.2	+	3	642	c.557C>T	c.(556-558)TCC>TTC	p.S186F	C1QA_uc001bfz.2_Missense_Mutation_p.S186F	NM_015991	NP_057075	P02745	C1QA_HUMAN	complement component 1, q subcomponent, A chain	186	C1q.				cell-cell signaling|complement activation, classical pathway|innate immune response	collagen|complement component C1 complex					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.41e-27)|Colorectal(126;1.52e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.63e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000541)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GTCCGACGCTCCCTGGGCTTC	0.592													14	63					0	0	1	0	0
C1QC	714	broad.mit.edu	37	1	22974025	22974025	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22974025C>T	uc001bgc.3	+	3	590	c.487C>T	c.(487-489)CCC>TCC	p.P163S	C1QC_uc001bga.3_Missense_Mutation_p.P163S|C1QC_uc001bgb.2_Missense_Mutation_p.P163S	NM_172369	NP_758957	P02747	C1QC_HUMAN	complement component 1, q subcomponent, C chain	163	C1q.				complement activation, classical pathway|innate immune response|negative regulation of granulocyte differentiation|negative regulation of macrophage differentiation	collagen					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.21e-27)|Colorectal(126;1.5e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.61e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000538)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.196)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CTGCAAAGTCCCCGGCCTCTA	0.592													14	46					0	0	1	0	0
C1QB	713	broad.mit.edu	37	1	22987444	22987444	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:22987444C>T	uc001bgd.2	+	3	459	c.327C>T	c.(325-327)CCC>CCT	p.P109P		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	109	Collagen-like 2.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCCCAGGCCCCAAAGGTGAAT	0.632													20	65					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23191528	23191528	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23191528G>A	uc009vqj.1	+	5	1271	c.1126G>A	c.(1126-1128)GGG>AGG	p.G376R	EPHB2_uc001bge.2_Missense_Mutation_p.G376R|EPHB2_uc001bgf.2_Missense_Mutation_p.G376R|EPHB2_uc010odu.1_Missense_Mutation_p.G376R|hsa-mir-4253|MI0015860_5'Flank	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	376	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CACCCGCTGCGGGGACAATGT	0.637									Hereditary_Prostate_Cancer				39	85					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23219402	23219402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23219402C>T	uc009vqj.1	+	7	1599	c.1454C>T	c.(1453-1455)GCC>GTC	p.A485V	EPHB2_uc001bge.2_Missense_Mutation_p.A485V|EPHB2_uc001bgf.2_Missense_Mutation_p.A485V|EPHB2_uc010odu.1_Missense_Mutation_p.A485V	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	485	Fibronectin type-III 2.|Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		AACGCCACAGCCATAAAAAGC	0.602									Hereditary_Prostate_Cancer				26	53					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23236971	23236971	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23236971C>T	uc009vqj.1	+	14	2744	c.2599C>T	c.(2599-2601)CGC>TGC	p.R867C	EPHB2_uc001bge.2_Missense_Mutation_p.R868C|EPHB2_uc001bgf.2_Missense_Mutation_p.R867C|EPHB2_uc010odu.1_Missense_Mutation_p.R809C	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	867	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GCAGAAGGACCGCAACCACCG	0.587									Hereditary_Prostate_Cancer				28	68					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23237025	23237025	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23237025C>T	uc009vqj.1	+	14	2798	c.2653C>T	c.(2653-2655)CGC>TGC	p.R885C	EPHB2_uc001bge.2_Missense_Mutation_p.R886C|EPHB2_uc001bgf.2_Missense_Mutation_p.R885C|EPHB2_uc010odu.1_Missense_Mutation_p.R827C	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	885	Cytoplasmic (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CAAGATGATCCGCAATCCCAA	0.637									Hereditary_Prostate_Cancer				12	51					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23237062	23237062	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23237062C>T	uc009vqj.1	+	14	2835	c.2690C>T	c.(2689-2691)TCC>TTC	p.S897F	EPHB2_uc001bge.2_Missense_Mutation_p.S898F|EPHB2_uc001bgf.2_Missense_Mutation_p.S897F|EPHB2_uc010odu.1_Missense_Mutation_p.S839F	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	897	Cytoplasmic (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GCGCCCCTCTCCTCTGGGTAA	0.617									Hereditary_Prostate_Cancer				10	30					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23238964	23238964	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23238964G>A	uc009vqj.1	+	15	2869	c.2724G>A	c.(2722-2724)ACG>ACA	p.T908T	EPHB2_uc001bge.2_Silent_p.T909T|EPHB2_uc001bgf.2_Silent_p.T908T|EPHB2_uc010odu.1_Silent_p.T850T	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	908	Cytoplasmic (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		TGGACCGCACGATCCCCGACT	0.617									Hereditary_Prostate_Cancer				23	80					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23239966	23239966	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23239966G>T	uc009vqj.1	+	16	3009	c.2864G>T	c.(2863-2865)CGG>CTG	p.R955L	EPHB2_uc001bge.2_Missense_Mutation_p.R956L|EPHB2_uc001bgf.2_Missense_Mutation_p.R955L|EPHB2_uc010odu.1_Missense_Mutation_p.R897L	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	955	Cytoplasmic (Potential).|SAM.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GACATTCTCCGGGTTGGGGTC	0.552									Hereditary_Prostate_Cancer				6	38					2.0095e-06	2.01295e-06	1	1	0
TCEA3	6920	broad.mit.edu	37	1	23724045	23724045	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23724045G>A	uc001bgx.1	-	7	792	c.657C>T	c.(655-657)ATC>ATT	p.I219I	TCEA3_uc009vqn.1_Silent_p.I198I	NM_003196	NP_003187	O75764	TCEA3_HUMAN	transcription elongation factor A (SII), 3	219	TFIIS central.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	nucleus	DNA binding|translation elongation factor activity|zinc ion binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.16e-05)|all_lung(284;6.68e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.0054)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.6e-25)|Colorectal(126;8.32e-08)|COAD - Colon adenocarcinoma(152;4.29e-06)|GBM - Glioblastoma multiforme(114;9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00424)|STAD - Stomach adenocarcinoma(196;0.0145)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0963)|LUSC - Lung squamous cell carcinoma(448;0.198)		TATGATCTTCGATTTCTGATG	0.498													33	67					0	0	1	0	0
ASAP3	55616	broad.mit.edu	37	1	23758277	23758277	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23758277C>T	uc001bha.2	-	23	2582	c.2458G>A	c.(2458-2460)GAG>AAG	p.E820K	ASAP3_uc001bgy.1_Missense_Mutation_p.E324K|ASAP3_uc001bgz.1_RNA|ASAP3_uc010odz.1_Missense_Mutation_p.E710K|ASAP3_uc010oea.1_Missense_Mutation_p.E811K|ASAP3_uc001bhb.2_Intron	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	820					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CGGAGGCCCTCTTCAGAGTTG	0.652													46	107					0	0	1	0	0
ASAP3	55616	broad.mit.edu	37	1	23782434	23782435	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23782434_23782435GG>AA	uc001bha.2	-	3	411_412	c.287_288CC>TT	c.(286-288)TCC>TTT	p.S96F	ASAP3_uc010odz.1_5'UTR|ASAP3_uc010oea.1_Missense_Mutation_p.S96F|ASAP3_uc001bhc.1_Missense_Mutation_p.S96F	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	96					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGAAGCCTGTGGACAGCTCATG	0.569													40	90					0	0	1	0	0
MDS2	259283	broad.mit.edu	37	1	23908127	23908127	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23908127C>T	uc001bhi.3	+	1		c.143C>T								Homo sapiens MDS2 gene.											ovary(2)	2						aaactgggttcctctaagccc	0.348			T	ETV6	MDS								7	12					0	0	1	0	0
MDS2	259283	broad.mit.edu	37	1	23919060	23919060	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:23919060G>A	uc001bhi.3	+	2		c.273G>A								Homo sapiens MDS2 gene.											ovary(2)	2						CCACCATGAAGCCCTTGATCC	0.448			T	ETV6	MDS								3	10					0	0	1	0	0
HMGCL	3155	broad.mit.edu	37	1	24140689	24140689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24140689G>A	uc001bib.2	-	5	532	c.488C>T	c.(487-489)TCT>TTT	p.S163F	HMGCL_uc010oec.1_Intron|HMGCL_uc009vqr.2_Intron|HMGCL_uc001bic.2_Missense_Mutation_p.S138F|HMGCL_uc009vqs.1_Intron|HMGCL_uc001bid.1_Missense_Mutation_p.S163F	NM_000191	NP_000182	P35914	HMGCL_HUMAN	3-hydroxy-3-methylglutaryl CoA lyase isoform 1	163					acetoacetic acid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA lyase activity|metal ion binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.0044)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.38e-24)|Colorectal(126;5.58e-08)|COAD - Colon adenocarcinoma(152;3.12e-06)|GBM - Glioblastoma multiforme(114;4.9e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000982)|KIRC - Kidney renal clear cell carcinoma(1967;0.0034)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0856)|LUSC - Lung squamous cell carcinoma(448;0.188)		CCCCCGCACAGAAATATTGGC	0.498													29	68					0	0	1	0	0
CNR2	1269	broad.mit.edu	37	1	24201316	24201316	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24201316G>A	uc001bif.2	-	2	919	c.792C>T	c.(790-792)CTC>CTT	p.L264L		NM_001841	NP_001832	P34972	CNR2_HUMAN	cannabinoid receptor 2 (macrophage)	264	Helical; Name=6; (Potential).				behavior|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	dendrite|integral to plasma membrane|perikaryon	cannabinoid receptor activity			skin(2)|central_nervous_system(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.32e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;2.9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.146)	Nabilone(DB00486)	TGTGGGCCATGAGGGCCAGCA	0.577													8	68					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24388527	24388527	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24388527C>T	uc001bin.3	-	33	4006	c.3843G>A	c.(3841-3843)CTG>CTA	p.L1281L	MYOM3_uc001bil.3_Silent_p.L174L|MYOM3_uc001bim.3_Silent_p.L938L	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1281										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CTTTGGGGTCCAGGATGTGAA	0.522													57	188					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24390596	24390596	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24390596C>T	uc001bin.3	-	30	3751	c.3588G>A	c.(3586-3588)GGG>GGA	p.G1196G	MYOM3_uc001bil.3_Silent_p.G89G|MYOM3_uc001bim.3_Silent_p.G853G	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1196	Ig-like C2-type 3.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TGTCGTCCTCCCCTCGATCGT	0.488													34	99					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24411015	24411015	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24411015C>T	uc001bin.3	-	16	2076	c.1913G>A	c.(1912-1914)CGG>CAG	p.R638Q	MYOM3_uc001bim.3_Missense_Mutation_p.R295Q|MYOM3_uc001bio.2_Missense_Mutation_p.R638Q|MYOM3_uc001bip.1_Missense_Mutation_p.R295Q	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	638	Fibronectin type-III 3.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CCCCACCTTCCGGGAGTAGAT	0.458													20	174					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24432489	24432489	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24432489G>A	uc001bin.3	-	5	644	c.481C>T	c.(481-483)CGC>TGC	p.R161C	MYOM3_uc001bio.2_Missense_Mutation_p.R161C|MYOM3_uc001bip.1_5'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	161	Ig-like C2-type 1.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GCGTGGGAGCGAAGAGGGATC	0.657													6	62					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24432531	24432531	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24432531C>T	uc001bin.3	-	5	602	c.439G>A	c.(439-441)GAG>AAG	p.E147K	MYOM3_uc001bio.2_Missense_Mutation_p.E147K|MYOM3_uc001bip.1_5'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	147	Potential.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TAGCACAGCTCCCTCAGCTCC	0.642													12	34					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24433686	24433686	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24433686C>T	uc001bin.3	-	4	442	c.279G>A	c.(277-279)GAG>GAA	p.E93E	MYOM3_uc001bio.2_Silent_p.E93E|MYOM3_uc001bip.1_5'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	93										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GCTCCTCCAGCTCCACGGCAG	0.687													4	14					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24435081	24435081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24435081G>A	uc001bin.3	-	2	209	c.46C>T	c.(46-48)CCC>TCC	p.P16S	MYOM3_uc001bio.2_Missense_Mutation_p.P16S|MYOM3_uc001bip.1_5'Flank	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	16										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		ATGGCCTGGGGGGGCCGGGGG	0.667													4	5					0	0	1	0	0
IL22RA1	58985	broad.mit.edu	37	1	24447414	24447415	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24447414_24447415GG>AA	uc001biq.1	-	7	1644_1645	c.1605_1606CC>TT	c.(1603-1608)TCCCTT>TCTTTT	p.L536F	IL22RA1_uc010oeg.1_Missense_Mutation_p.L468F|IL22RA1_uc009vrb.1_Missense_Mutation_p.L400F|IL22RA1_uc010oeh.1_3'UTR	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	536	Cytoplasmic (Potential).					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		GGACACACAAGGGACTCCAGCA	0.614													6	77					0	0	1	0	0
IL22RA1	58985	broad.mit.edu	37	1	24447993	24447993	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24447993G>A	uc001biq.1	-	7	1066	c.1027C>T	c.(1027-1029)CCC>TCC	p.P343S	IL22RA1_uc010oeg.1_Missense_Mutation_p.P275S|IL22RA1_uc009vrb.1_Missense_Mutation_p.P207S|IL22RA1_uc010oeh.1_Missense_Mutation_p.P343S	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	343	Cytoplasmic (Potential).					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		AGGATCTGGGGAGGTGGCACG	0.627													30	61					0	0	1	0	0
IL28RA	163702	broad.mit.edu	37	1	24483700	24483700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24483700C>T	uc001bis.2	-	7	1496	c.1483G>A	c.(1483-1485)GAT>AAT	p.D495N	IL28RA_uc001bir.2_Missense_Mutation_p.D466N|IL28RA_uc001bit.2_3'UTR|IL28RA_uc001biu.2_Missense_Mutation_p.D411N	NM_170743	NP_734464	Q8IU57	I28RA_HUMAN	interleukin 28 receptor, alpha isoform 1	495	Cytoplasmic (Potential).				cytokine-mediated signaling pathway|negative regulation of cell proliferation|regulation of defense response to virus by host	interleukin-28 receptor complex	protein binding|receptor activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00117)|all_lung(284;0.00151)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.21e-24)|Colorectal(126;6.61e-08)|COAD - Colon adenocarcinoma(152;3.56e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00918)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.185)		CTGCCCGCATCGCTGTCCTCA	0.627													11	57					0	0	1	0	0
IL28RA	163702	broad.mit.edu	37	1	24483953	24483953	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24483953C>T	uc001bis.2	-	7	1243	c.1230G>A	c.(1228-1230)AAG>AAA	p.K410K	IL28RA_uc001bir.2_Silent_p.K381K|IL28RA_uc001bit.2_3'UTR|IL28RA_uc001biu.2_Silent_p.K326K	NM_170743	NP_734464	Q8IU57	I28RA_HUMAN	interleukin 28 receptor, alpha isoform 1	410	Cytoplasmic (Potential).				cytokine-mediated signaling pathway|negative regulation of cell proliferation|regulation of defense response to virus by host	interleukin-28 receptor complex	protein binding|receptor activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00117)|all_lung(284;0.00151)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.21e-24)|Colorectal(126;6.61e-08)|COAD - Colon adenocarcinoma(152;3.56e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00918)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.185)		GGCCTGGCCCCTTCTCAGCCA	0.597													9	80					0	0	1	0	0
GRHL3	57822	broad.mit.edu	37	1	24669185	24669185	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24669185G>A	uc001biy.2	+	10	1269	c.1223G>A	c.(1222-1224)GGA>GAA	p.G408E	GRHL3_uc001bix.2_Missense_Mutation_p.G403E|GRHL3_uc001biz.2_Missense_Mutation_p.G310E	NM_021180	NP_067003	Q8TE85	GRHL3_HUMAN	sister-of-mammalian grainyhead protein isoform	403					regulation of actin cytoskeleton organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00171)|all_lung(284;0.00226)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;8.72e-25)|Colorectal(126;4.38e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00377)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.143)		CCCCTGCAGGGAGCTGAGAGG	0.587													39	112					0	0	1	0	0
GRHL3	57822	broad.mit.edu	37	1	24671403	24671403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24671403G>A	uc001biy.2	+	12	1497	c.1451G>A	c.(1450-1452)GGA>GAA	p.G484E	GRHL3_uc001bix.2_Missense_Mutation_p.G479E|GRHL3_uc001biz.2_Missense_Mutation_p.G386E	NM_021180	NP_067003	Q8TE85	GRHL3_HUMAN	sister-of-mammalian grainyhead protein isoform	479					regulation of actin cytoskeleton organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00171)|all_lung(284;0.00226)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;8.72e-25)|Colorectal(126;4.38e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00377)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.143)		CCCTCGGCAGGACCCAGCAGC	0.597													15	52					0	0	1	0	0
C1orf201	90529	broad.mit.edu	37	1	24696301	24696301	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24696301C>T	uc001bjc.2	-	7	735	c.600G>A	c.(598-600)GTG>GTA	p.V200V	C1orf201_uc010oej.1_Silent_p.V28V|C1orf201_uc001bja.2_Silent_p.V153V|C1orf201_uc001bjb.2_Silent_p.V108V|C1orf201_uc001bjd.2_Silent_p.V200V|C1orf201_uc001bje.1_Silent_p.V153V|C1orf201_uc001bjf.2_Silent_p.V68V			Q5TH74	CA201_HUMAN	RecName: Full=UPF0490 protein C1orf201;	200										ovary(1)|breast(1)	2		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.0191)|all_lung(284;0.0251)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.056)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.48e-25)|Colorectal(126;7.29e-08)|COAD - Colon adenocarcinoma(152;3.85e-06)|GBM - Glioblastoma multiforme(114;0.000399)|BRCA - Breast invasive adenocarcinoma(304;0.00107)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00393)|READ - Rectum adenocarcinoma(331;0.0672)|Lung(427;0.145)		GCGACTGCTTCACAAGGGATT	0.393													13	118					0	0	1	0	0
C1orf201	90529	broad.mit.edu	37	1	24706163	24706163	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24706163G>A	uc001bjc.2	-	5	577	c.442C>T	c.(442-444)CCT>TCT	p.P148S	C1orf201_uc001bja.2_Missense_Mutation_p.P101S|C1orf201_uc001bjb.2_Missense_Mutation_p.P56S|C1orf201_uc001bjd.2_Missense_Mutation_p.P148S|C1orf201_uc001bje.1_Missense_Mutation_p.P101S|C1orf201_uc001bjf.2_Missense_Mutation_p.P16S			Q5TH74	CA201_HUMAN	RecName: Full=UPF0490 protein C1orf201;	148										ovary(1)|breast(1)	2		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.0191)|all_lung(284;0.0251)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.056)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.48e-25)|Colorectal(126;7.29e-08)|COAD - Colon adenocarcinoma(152;3.85e-06)|GBM - Glioblastoma multiforme(114;0.000399)|BRCA - Breast invasive adenocarcinoma(304;0.00107)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00393)|READ - Rectum adenocarcinoma(331;0.0672)|Lung(427;0.145)		TTTGGTGCAGGAGTTTCAAAC	0.383													29	172					0	0	1	0	0
SRRM1	10250	broad.mit.edu	37	1	24989170	24989170	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24989170C>T	uc001bjm.2	+	12	1727	c.1503C>T	c.(1501-1503)TCC>TCT	p.S501S	SRRM1_uc010oel.1_Silent_p.S499S|SRRM1_uc009vrh.1_Silent_p.S460S|SRRM1_uc009vri.1_Silent_p.S416S|SRRM1_uc010oem.1_RNA	NM_005839	NP_005830	Q8IYB3	SRRM1_HUMAN	serine/arginine repetitive matrix 1	501	Necessary for speckles and matrix localization.|Arg-rich.|Ser-rich.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck	DNA binding|protein binding|RNA binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		CCTCCTCCTCCTCAGAAGATG	0.453													14	104					0	0	1	0	0
SRRM1	10250	broad.mit.edu	37	1	24995781	24995781	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24995781C>T	uc001bjm.2	+	14	2131	c.1907C>T	c.(1906-1908)TCC>TTC	p.S636F	SRRM1_uc010oel.1_Missense_Mutation_p.S648F|SRRM1_uc009vrh.1_Missense_Mutation_p.S609F|SRRM1_uc009vri.1_Missense_Mutation_p.S565F	NM_005839	NP_005830	Q8IYB3	SRRM1_HUMAN	serine/arginine repetitive matrix 1	636	Pro-rich.|Necessary for speckles and matrix localization.|Arg-rich.|Ser-rich.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck	DNA binding|protein binding|RNA binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		CGGCGGGTCTCCCATTCTCCA	0.532													43	112					0	0	1	0	0
TMEM50A	23585	broad.mit.edu	37	1	25666982	25666982	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:25666982C>T	uc001bke.2	+	2	155	c.5C>T	c.(4-6)TCT>TTT	p.S2F	TMEM50A_uc010oeq.1_Missense_Mutation_p.S2F|TMEM50A_uc009vrr.2_Intron|TMEM50A_uc009vrs.2_Intron	NM_014313	NP_055128	O95807	TM50A_HUMAN	small membrane protein 1	2						endoplasmic reticulum|integral to membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;3.47e-27)|Colorectal(126;1.1e-08)|COAD - Colon adenocarcinoma(152;7.48e-07)|STAD - Stomach adenocarcinoma(196;0.00035)|BRCA - Breast invasive adenocarcinoma(304;0.00047)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|GBM - Glioblastoma multiforme(114;0.00106)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.204)		AAAAAAATGTCTGGATTTCTA	0.368													7	73					0	0	1	0	0
RHCE	6006	broad.mit.edu	37	1	25701888	25701888	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:25701888C>T	uc001bkf.2	-	8	1191	c.1105G>A	c.(1105-1107)GAA>AAA	p.E369K	RHCE_uc001bkg.2_Missense_Mutation_p.G324E|RHCE_uc001bkh.2_Intron|RHCE_uc001bki.2_Missense_Mutation_p.E218K|RHCE_uc001bkj.2_Missense_Mutation_p.E353K	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	369	Helical; (Potential).					integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		AAGCTGAGTTCCCCAATGCTG	0.547													45	172					0	0	1	0	0
RHCE	6006	broad.mit.edu	37	1	25701903	25701903	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:25701903G>A	uc001bkf.2	-	8	1176	c.1090C>T	c.(1090-1092)CTC>TTC	p.L364F	RHCE_uc001bkg.2_Missense_Mutation_p.P319L|RHCE_uc001bkh.2_Intron|RHCE_uc001bki.2_Missense_Mutation_p.L213F|RHCE_uc001bkj.2_Missense_Mutation_p.L348F	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	364	Helical; (Potential).					integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		ATGCTGAGGAGGACCTGGAAG	0.542													35	163					0	0	1	0	0
RHCE	6006	broad.mit.edu	37	1	25718530	25718530	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:25718530C>T	uc001bkf.2	-	4	675	c.589G>A	c.(589-591)GAT>AAT	p.D197N	RHCE_uc001bkg.2_Missense_Mutation_p.D197N|RHCE_uc001bkh.2_Intron|RHCE_uc001bki.2_Intron|RHCE_uc001bkj.2_Missense_Mutation_p.D181N	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	197						integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		TGATCATTATCCTCCGTTCCC	0.537													39	104					0	0	1	0	0
RHCE	6006	broad.mit.edu	37	1	25735272	25735272	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:25735272G>A	uc001bkf.2	-	2	323	c.237C>T	c.(235-237)TTC>TTT	p.F79F	RHCE_uc001bkg.2_Silent_p.F79F|RHCE_uc001bkh.2_Silent_p.F79F|RHCE_uc001bki.2_Silent_p.F79F|RHCE_uc001bkj.2_Silent_p.F63F	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	79	Helical; (Potential).					integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		TGAAGAGGTTGAAGGCCACAC	0.597													18	48					0	0	1	0	0
TMEM57	55219	broad.mit.edu	37	1	25812187	25812187	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:25812187C>T	uc001bkk.2	+	8	1599	c.1397C>T	c.(1396-1398)GCC>GTC	p.A466V	TMEM57_uc009vru.2_Missense_Mutation_p.A239V|TMEM57_uc009vrv.2_Missense_Mutation_p.A108V	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	466						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		GAGCAGGAAGCCCGAAGTTTT	0.428													28	119					0	0	1	0	0
TMEM57	55219	broad.mit.edu	37	1	25824819	25824819	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:25824819C>T	uc001bkk.2	+	11	2059	c.1857C>T	c.(1855-1857)GCC>GCT	p.A619A	TMEM57_uc009vru.2_Silent_p.A392A|TMEM57_uc009vrv.2_Silent_p.A261A	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	619						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		AAGTCATGGCCGTCATGCCCA	0.502													38	93					0	0	1	0	0
LDLRAP1	26119	broad.mit.edu	37	1	25891695	25891695	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:25891695C>T	uc001bkl.3	+	8	893	c.779C>T	c.(778-780)TCG>TTG	p.S260L	LDLRAP1_uc009vrw.2_RNA|LDLRAP1_uc009vrx.2_Missense_Mutation_p.S90L	NM_015627	NP_056442	Q5SW96	ARH_HUMAN	low density lipoprotein receptor adaptor protein	260	AP-2 complex binding.|[DE]-X(1,2)-F-X-X-[FL]-X-X-X-R motif.				amyloid precursor protein metabolic process|cholesterol homeostasis|cholesterol metabolic process|positive regulation of receptor-mediated endocytosis|receptor internalization|receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|regulation of establishment of protein localization in plasma membrane|regulation of protein binding	basal plasma membrane|cytosol|early endosome|internal side of plasma membrane|neurofilament|recycling endosome	beta-amyloid binding|clathrin binding|low-density lipoprotein particle receptor binding|phosphatidylinositol-4,5-bisphosphate binding|phosphotyrosine binding|protein binding, bridging|protein complex binding|receptor signaling complex scaffold activity|signaling adaptor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.63e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000728)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000969)|GBM - Glioblastoma multiforme(114;0.00914)|READ - Rectum adenocarcinoma(331;0.0649)		GAAGCGTTTTCGAGGTAATGC	0.562													55	127					0	0	1	0	0
MAN1C1	57134	broad.mit.edu	37	1	26012982	26012982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26012982G>A	uc001bkm.2	+	2	922	c.592G>A	c.(592-594)GAA>AAA	p.E198K	MAN1C1_uc009vry.1_Missense_Mutation_p.E18K	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	198	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		GGGGAAAAACGAACTCCGTCC	0.498													59	141					0	0	1	0	0
MAN1C1	57134	broad.mit.edu	37	1	26090428	26090428	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26090428C>T	uc001bkm.2	+	7	1441	c.1111C>T	c.(1111-1113)CTC>TTC	p.L371F	MAN1C1_uc009vry.1_Missense_Mutation_p.L191F	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	371	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		CCCCAACTTCCTCAGCCCAGT	0.582													31	91					0	0	1	0	0
MAN1C1	57134	broad.mit.edu	37	1	26104708	26104708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26104708G>A	uc001bkm.2	+	9	1700	c.1370G>A	c.(1369-1371)GGC>GAC	p.G457D	MAN1C1_uc009vry.1_Missense_Mutation_p.G277D|MAN1C1_uc001bkn.2_5'Flank	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	457	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		TTCTCCGGGGGCATGATCGCC	0.612													21	44					0	0	1	0	0
SEPN1	57190	broad.mit.edu	37	1	26138213	26138213	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26138213C>T	uc010oer.1	+	11	1179	c.1124C>T	c.(1123-1125)CCC>CTC	p.P375L	SEPN1_uc010oes.1_Missense_Mutation_p.P341L	NM_020451	NP_065184	Q9NZV5	SELN_HUMAN	selenoprotein N, 1 isoform 1 precursor	375						endoplasmic reticulum membrane|extracellular region	protein binding			ovary(2)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0421)|OV - Ovarian serous cystadenocarcinoma(117;1.26e-25)|Colorectal(126;3.01e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0143)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTCTGTGCCCTCCGTGATC	0.617													4	7					0	0	1	0	0
PAQR7	164091	broad.mit.edu	37	1	26189653	26189653	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26189653G>A	uc001bkx.2	-	2	1345	c.678C>T	c.(676-678)TTC>TTT	p.F226F		NM_178422	NP_848509	Q86WK9	MPRA_HUMAN	progestin and adipoQ receptor family member VII	226	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding			breast(3)	3		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.16e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000724)|BRCA - Breast invasive adenocarcinoma(304;0.000965)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0136)|READ - Rectum adenocarcinoma(331;0.0649)		CGGAGGACACGAAGATACGAT	0.577													29	63					0	0	1	0	0
PAFAH2	5051	broad.mit.edu	37	1	26311004	26311004	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26311004G>A	uc001bld.3	-	5	537	c.357C>T	c.(355-357)GCC>GCT	p.A119A	PAFAH2_uc001ble.3_Silent_p.A119A	NM_000437	NP_000428	Q99487	PAFA2_HUMAN	platelet-activating factor acetylhydrolase 2	119					lipid catabolic process	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding			ovary(2)	2		Colorectal(325;3.47e-05)|Lung NSC(340;6.23e-05)|all_lung(284;9.48e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-25)|Colorectal(126;3.57e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00717)|READ - Rectum adenocarcinoma(331;0.0649)		CCATGCAGAAGGCTGAATACA	0.413													11	34					0	0	1	0	0
SLC30A2	7780	broad.mit.edu	37	1	26365705	26365705	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26365705C>T	uc001blh.1	-	7	1135	c.918G>A	c.(916-918)GAG>GAA	p.E306E	SLC30A2_uc001blg.1_Silent_p.E355E	NM_032513	NP_115902	Q9BRI3	ZNT2_HUMAN	solute carrier family 30, member 2 isoform 2	306	Vacuolar (Potential).				positive regulation of sequestering of zinc ion|zinc ion transport	integral to membrane|late endosome|lysosomal membrane	cation transmembrane transporter activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;7.09e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000728)|BRCA - Breast invasive adenocarcinoma(304;0.000969)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00614)|READ - Rectum adenocarcinoma(331;0.0649)		CCGAGTAGTCCTCGATCTGGA	0.612													4	35					0	0	1	0	0
TRIM63	84676	broad.mit.edu	37	1	26393830	26393830	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26393830G>A	uc001bli.1	-	1	292	c.156C>T	c.(154-156)TTC>TTT	p.F52F		NM_032588	NP_115977	Q969Q1	TRI63_HUMAN	muscle specific ring finger protein 1	52	RING-type.					cytoplasm|microtubule|nucleus	ligase activity|signal transducer activity|titin binding|zinc ion binding			kidney(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000154)|all_lung(284;0.00021)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;9.15e-26)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000767)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CACTTACCTGGAAGATGTCAT	0.557													12	27					0	0	1	0	0
PDIK1L	149420	broad.mit.edu	37	1	26440953	26440953	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26440953C>T	uc010oew.1	+	2	427	c.154C>T	c.(154-156)CGT>TGT	p.R52C	PDIK1L_uc001blj.3_Missense_Mutation_p.R52C|PDIK1L_uc009vsb.2_Missense_Mutation_p.R52C	NM_152835	NP_690048	Q8N165	PDK1L_HUMAN	PDLIM1 interacting kinase 1 like	52	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity				0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00239)|all_lung(284;0.00366)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;7.32e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000735)|BRCA - Breast invasive adenocarcinoma(304;0.000973)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.015)|READ - Rectum adenocarcinoma(331;0.0649)		ACTAGCCCTTCGTGAGTTCTG	0.458													10	34					0	0	1	0	0
CNKSR1	10256	broad.mit.edu	37	1	26514727	26514727	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26514727G>A	uc001bln.3	+	17	1536	c.1478G>A	c.(1477-1479)TGG>TAG	p.W493*	CNKSR1_uc001blm.3_Nonsense_Mutation_p.W486*|CNKSR1_uc009vsd.2_Nonsense_Mutation_p.W228*|CNKSR1_uc009vse.2_Nonsense_Mutation_p.W228*|CNKSR1_uc001blo.2_Nonsense_Mutation_p.W228*|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	493	PH.			W->A: No interaction with Rho.	Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		CTCCATAGGTGGGTGCGTCAT	0.383													24	34					0	0	1	0	0
CATSPER4	378807	broad.mit.edu	37	1	26517322	26517322	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26517322G>A	uc010oez.1	+	1	204	c.204G>A	c.(202-204)ACG>ACA	p.T68T	CATSPER4_uc010oey.1_5'UTR|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	68	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		AGGAAATCACGAACAAAGCGG	0.602													9	6					0	0	1	0	0
CATSPER4	378807	broad.mit.edu	37	1	26517895	26517895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26517895C>T	uc010oez.1	+	2	331	c.331C>T	c.(331-333)CTC>TTC	p.L111F	CATSPER4_uc010oey.1_5'UTR|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	111	Helical; Name=Segment S1; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		CACCATCGCTCTCCGTACCAA	0.418													17	40					0	0	1	0	0
CATSPER4	378807	broad.mit.edu	37	1	26524815	26524815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26524815C>T	uc010oez.1	+	6	717	c.717C>T	c.(715-717)TTC>TTT	p.F239F	CATSPER4_uc010oey.1_Silent_p.F61F|CATSPER4_uc009vsf.2_Intron	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	239	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		TTGGTGCATTCGTGCCCAAGC	0.512													132	311					0	0	1	0	0
CATSPER4	378807	broad.mit.edu	37	1	26527408	26527408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26527408G>A	uc010oez.1	+	8	1075	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	CATSPER4_uc010oey.1_Missense_Mutation_p.E181K|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	359	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		TCTCCTCCAGGAACCCCTTGC	0.577													19	70					0	0	1	0	0
CCDC21	64793	broad.mit.edu	37	1	26581740	26581740	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26581740C>T	uc001bls.1	+	4	418	c.287C>T	c.(286-288)CCT>CTT	p.P96L	CCDC21_uc001blr.2_Missense_Mutation_p.P96L|CCDC21_uc010ofa.1_Missense_Mutation_p.P45L	NM_022778	NP_073615	Q6P2H3	CEP85_HUMAN	coiled-coil domain containing 21	96						centrosome|nucleolus|spindle pole					0		all_cancers(24;7e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.6e-26)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;9.48e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00917)|READ - Rectum adenocarcinoma(331;0.0649)		CATGTGATGCCTTCTACTTTA	0.498													124	282					0	0	1	0	0
SH3BGRL3	83442	broad.mit.edu	37	1	26607282	26607282	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26607282C>T	uc001blu.2	+	2	509	c.75C>T	c.(73-75)ACC>ACT	p.T25T		NM_031286	NP_112576	Q9H299	SH3L3_HUMAN	SH3 domain binding glutamic acid-rich protein	25	Glutaredoxin.				cell redox homeostasis	cytoplasm|nucleus	electron carrier activity|protein disulfide oxidoreductase activity				0		all_cancers(24;1.16e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.22e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00751)|READ - Rectum adenocarcinoma(331;0.0649)		GCGAGGTGACCCGAATCCTGG	0.587													14	82					0	0	1	0	0
UBXN11	91544	broad.mit.edu	37	1	26627455	26627455	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26627455G>A	uc001blw.2	-	5	434	c.161C>T	c.(160-162)TCC>TTC	p.S54F	UBXN11_uc001blz.1_Intron|UBXN11_uc001blv.2_Missense_Mutation_p.S16F|UBXN11_uc001bly.2_Missense_Mutation_p.S54F|UBXN11_uc001blx.2_Intron|UBXN11_uc001bma.2_Intron|UBXN11_uc001bmb.1_Missense_Mutation_p.S54F|UBXN11_uc010ofb.1_Intron|UBXN11_uc010ofc.1_Intron	NM_183008	NP_892120	Q5T124	UBX11_HUMAN	socius isoform 2	54						cytoplasm|cytoskeleton				ovary(1)	1						GCCATAGCAGGAAGGGACTGA	0.617													43	91					0	0	1	0	0
AIM1L	55057	broad.mit.edu	37	1	26664512	26664512	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26664512C>T	uc001bmd.3	-	7	793	c.363G>A	c.(361-363)GGG>GGA	p.G121G	AIM1L_uc001bmf.3_Silent_p.G12G	NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like	121							sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		CCCTGGGCTCCCCTGGCTTCT	0.577													9	15					0	0	1	0	0
ZNF683	257101	broad.mit.edu	37	1	26689615	26689615	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26689615G>A	uc001bmg.1	-	5	1163	c.1045C>T	c.(1045-1047)CCA>TCA	p.P349S	ZNF683_uc001bmh.1_Missense_Mutation_p.P349S|ZNF683_uc009vsj.1_Missense_Mutation_p.P349S	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	349					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		CACTGGAATGGACGCTCTCCA	0.602													5	15					0	0	1	0	0
ZNF683	257101	broad.mit.edu	37	1	26691277	26691277	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26691277G>A	uc001bmg.1	-	4	878	c.760C>T	c.(760-762)CTT>TTT	p.L254F	ZNF683_uc001bmh.1_Missense_Mutation_p.L254F|ZNF683_uc009vsj.1_Missense_Mutation_p.L254F	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	254					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		GGGTAGGGAAGCAGGGTCTCC	0.652													34	43					0	0	1	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26877949	26877949	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:26877949C>T	uc001bmr.1	+	5	532	c.369C>T	c.(367-369)TTC>TTT	p.F123F	RPS6KA1_uc010ofe.1_Silent_p.F31F|RPS6KA1_uc010off.1_Silent_p.F107F|RPS6KA1_uc001bms.1_Silent_p.F132F|RPS6KA1_uc009vsl.1_5'UTR	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	123	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		ATCACCCATTCGTGGTGAAGC	0.567													12	31					0	0	1	0	0
ARID1A	8289	broad.mit.edu	37	1	27087520	27087520	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27087520C>T	uc001bmv.1	+	5	2467	c.2094C>T	c.(2092-2094)TCC>TCT	p.S698S	ARID1A_uc001bmt.1_Silent_p.S698S|ARID1A_uc001bmu.1_Silent_p.S698S|ARID1A_uc001bmw.1_Silent_p.S315S	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	698					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		CTTCCCCGTCCCCTGTTGGCT	0.607			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								29	68					0	0	1	0	0
PIGV	55650	broad.mit.edu	37	1	27124182	27124182	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27124182C>T	uc001bmz.2	+	4	1660	c.1329C>T	c.(1327-1329)TCC>TCT	p.S443S	PIGV_uc001bmy.2_Silent_p.S208S|PIGV_uc009vso.2_Missense_Mutation_p.P437S|PIGV_uc010ofg.1_Silent_p.S208S|PIGV_uc001bna.2_Silent_p.S443S	NM_017837	NP_060307	Q9NUD9	PIGV_HUMAN	phosphatidylinositol glycan class V	443	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	glycolipid mannosyltransferase activity			ovary(1)	1		all_cancers(24;3.93e-26)|all_epithelial(13;3.96e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.26e-54)|Epithelial(14;2.85e-53)|OV - Ovarian serous cystadenocarcinoma(117;1.91e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000504)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.0222)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.153)|LUSC - Lung squamous cell carcinoma(448;0.227)		CAGAGGACTCCCCACCAGGAC	0.478													12	65					0	0	1	0	0
SFN	2810	broad.mit.edu	37	1	27190435	27190435	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27190435G>A	uc001bnc.1	+	1	803	c.732G>A	c.(730-732)CAG>CAA	p.Q244Q	uc010ofi.1_RNA	NM_006142	NP_006133	P31947	1433S_HUMAN	stratifin	244					DNA damage response, signal transduction resulting in induction of apoptosis|negative regulation of caspase activity|release of cytochrome c from mitochondria	cytoplasm|extracellular space|nucleus	protein domain specific binding|protein kinase C inhibitor activity				0		all_cancers(24;1.23e-26)|all_epithelial(13;1.19e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;0.00017)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.1e-52)|Epithelial(14;2.31e-52)|OV - Ovarian serous cystadenocarcinoma(117;8.22e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)|GBM - Glioblastoma multiforme(114;0.0767)|Lung(427;0.215)		AGGCTCCCCAGGAGCCCCAGA	0.677													20	36					0	0	1	0	0
NR0B2	8431	broad.mit.edu	37	1	27238395	27238395	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27238395G>A	uc001bnf.2	-	2	851	c.715C>T	c.(715-717)CCT>TCT	p.P239S		NM_021969	NP_068804	Q15466	NR0B2_HUMAN	short heterodimer partner	239					cholesterol metabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	DNA binding|protein domain specific binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity				0		all_cancers(24;1.23e-26)|all_epithelial(13;1.19e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;0.00017)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.01e-51)|OV - Ovarian serous cystadenocarcinoma(117;8.22e-30)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		CCAATGATAGGGCGAAAGAAG	0.612													30	116					0	0	1	0	0
NR0B2	8431	broad.mit.edu	37	1	27238410	27238410	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27238410C>T	uc001bnf.2	-	2	836	c.700G>A	c.(700-702)GAC>AAC	p.D234N		NM_021969	NP_068804	Q15466	NR0B2_HUMAN	short heterodimer partner	234					cholesterol metabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	DNA binding|protein domain specific binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity				0		all_cancers(24;1.23e-26)|all_epithelial(13;1.19e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;0.00017)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.01e-51)|OV - Ovarian serous cystadenocarcinoma(117;8.22e-30)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		AAGAAGAGGTCCCCAAGCAGG	0.597													34	130					0	0	1	0	0
SLC9A1	6548	broad.mit.edu	37	1	27436206	27436206	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27436206G>A	uc001bnm.2	-	3	1502	c.876C>T	c.(874-876)TTC>TTT	p.F292F	SLC9A1_uc010ofk.1_5'UTR|SLC9A1_uc001bnn.2_Silent_p.F292F	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	292	Extracellular (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	GGAAGCCGAGGAAGATGTCCA	0.612													37	105					0	0	1	0	0
MAP3K6	9064	broad.mit.edu	37	1	27683082	27683082	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27683082G>A	uc001bny.1	-	25	3772	c.3523C>T	c.(3523-3525)CGG>TGG	p.R1175W	MAP3K6_uc009vsw.1_Missense_Mutation_p.R1167W	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	1175	Potential.				activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GGGCTTTACCGATCAGTCTCT	0.642													13	24					0	0	1	0	0
MAP3K6	9064	broad.mit.edu	37	1	27684701	27684701	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27684701G>A	uc001bny.1	-	21	3135	c.2886C>T	c.(2884-2886)TGC>TGT	p.C962C	MAP3K6_uc009vsw.1_Silent_p.C954C|MAP3K6_uc001bnz.1_Silent_p.C485C	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	962					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CATAACTGAGGCAGCGCTTCG	0.607											OREG0013282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	50					0	0	1	0	0
MAP3K6	9064	broad.mit.edu	37	1	27685247	27685247	+	Missense_Mutation	SNP	G	A	A	rs146598623		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27685247G>A	uc001bny.1	-	19	2785	c.2536C>T	c.(2536-2538)CGC>TGC	p.R846C	MAP3K6_uc009vsw.1_Missense_Mutation_p.R838C|MAP3K6_uc001bnz.1_Missense_Mutation_p.R369C	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	846	Protein kinase.				activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		AAGGGGGGGCGACCTGTGGCC	0.617													23	45					0	0	1	0	0
MAP3K6	9064	broad.mit.edu	37	1	27690811	27690811	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27690811G>A	uc001bny.1	-	4	828	c.579C>T	c.(577-579)GGC>GGT	p.G193G	MAP3K6_uc009vsw.1_Silent_p.G185G|MAP3K6_uc001bnz.1_5'Flank	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	193					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CCCGCAGAAGGCCTGCATCAC	0.662													33	94					0	0	1	0	0
FCN3	8547	broad.mit.edu	37	1	27697464	27697464	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27697464C>T	uc001boa.2	-	6	400	c.394_splice	c.e6-1	p.V132_splice	FCN3_uc001bob.2_Splice_Site_p.V121_splice	NM_003665	NP_003656	O75636	FCN3_HUMAN	ficolin 3 isoform 1 precursor						complement activation, lectin pathway|signal transduction	collagen|extracellular space	receptor binding|sugar binding				0		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;1.42e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00128)|KIRC - Kidney renal clear cell carcinoma(1967;0.00155)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		TCTGAAACACCTGGGGGAGGG	0.577													10	69					0	0	1	0	0
FCN3	8547	broad.mit.edu	37	1	27700886	27700886	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27700886G>A	uc001boa.2	-	2	154	c.148C>T	c.(148-150)CCA>TCA	p.P50S	FCN3_uc001bob.2_Missense_Mutation_p.P50S	NM_003665	NP_003656	O75636	FCN3_HUMAN	ficolin 3 isoform 1 precursor	50	Collagen-like.				complement activation, lectin pathway|signal transduction	collagen|extracellular space	receptor binding|sugar binding				0		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;1.42e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00128)|KIRC - Kidney renal clear cell carcinoma(1967;0.00155)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GGACTTCCTGGAGCTCCGGGA	0.617													12	52					0	0	1	0	0
WASF2	10163	broad.mit.edu	37	1	27736193	27736193	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27736193G>A	uc001bof.1	-	8	1548	c.1332C>T	c.(1330-1332)ATC>ATT	p.I444I	WASF2_uc010ofl.1_Intron	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	444	WH2.				actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		TACCTTGACGGATGGCTGAAA	0.572													20	78					0	0	1	0	0
WASF2	10163	broad.mit.edu	37	1	27744833	27744833	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27744833G>A	uc001bof.1	-	4	572	c.356C>T	c.(355-357)CCT>CTT	p.P119L	WASF2_uc010ofl.1_Missense_Mutation_p.P119L	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	119					actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		TTCTAAGACAGGCACTGGGAG	0.458													33	91					0	0	1	0	0
AHDC1	27245	broad.mit.edu	37	1	27877351	27877351	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27877351G>A	uc009vsy.2	-	6	2245	c.1276C>T	c.(1276-1278)CTG>TTG	p.L426L	AHDC1_uc009vsz.1_Silent_p.L426L	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	426	Pro-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GGTTCGGCCAGGGCAGCCACC	0.726													4	10					0	0	1	0	0
FGR	2268	broad.mit.edu	37	1	27939826	27939826	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27939826C>T	uc001boj.2	-	10	1431	c.1285G>A	c.(1285-1287)GCT>ACT	p.A429T	FGR_uc001boi.2_Missense_Mutation_p.A132T|FGR_uc001bok.2_Missense_Mutation_p.A429T|FGR_uc001bol.2_Missense_Mutation_p.A429T|FGR_uc001bom.2_Missense_Mutation_p.A429T	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	429	Protein kinase.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		AAGAGGGCAGCTTCTGGGGCT	0.547													12	120					0	0	1	0	0
FGR	2268	broad.mit.edu	37	1	27941044	27941044	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27941044G>A	uc001boj.2	-	9	1292	c.1146C>T	c.(1144-1146)GAC>GAT	p.D382D	FGR_uc001boi.2_Silent_p.D85D|FGR_uc001bok.2_Silent_p.D382D|FGR_uc001bol.2_Silent_p.D382D|FGR_uc001bom.2_Silent_p.D382D	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	382	Protein kinase.	Proton acceptor (By similarity).			platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CTGCCCTCAGGTCGCGGTGAA	0.532													10	25					0	0	1	0	0
FGR	2268	broad.mit.edu	37	1	27943722	27943722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27943722C>T	uc001boj.2	-	4	660	c.514G>A	c.(514-516)GAA>AAA	p.E172K	FGR_uc001boi.2_5'Flank|FGR_uc001bok.2_Missense_Mutation_p.E172K|FGR_uc001bol.2_Missense_Mutation_p.E172K|FGR_uc001bom.2_Missense_Mutation_p.E172K	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	172	SH2.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GTCTCGCTTTCCCGAATGAGA	0.592													30	61					0	0	1	0	0
FGR	2268	broad.mit.edu	37	1	27948152	27948152	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27948152C>T	uc001boj.2	-	3	492	c.346G>A	c.(346-348)GAG>AAG	p.E116K	FGR_uc001bok.2_Missense_Mutation_p.E116K|FGR_uc001bol.2_Missense_Mutation_p.E116K|FGR_uc001bom.2_Missense_Mutation_p.E116K	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	116	SH3.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GACCGAGCCTCCCACCAGTCA	0.592													27	70					0	0	1	0	0
FGR	2268	broad.mit.edu	37	1	27949610	27949610	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27949610C>T	uc001boj.2	-	2	418	c.272G>A	c.(271-273)CGA>CAA	p.R91Q	FGR_uc001bok.2_Missense_Mutation_p.R91Q|FGR_uc001bol.2_Missense_Mutation_p.R91Q|FGR_uc001bom.2_Missense_Mutation_p.R91Q	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	91	SH3.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		ATCCTCAGTTCGAGCCTCATA	0.517													12	36					0	0	1	0	0
FGR	2268	broad.mit.edu	37	1	27949645	27949645	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:27949645C>T	uc001boj.2	-	2	383	c.237G>A	c.(235-237)GTG>GTA	p.V79V	FGR_uc001bok.2_Silent_p.V79V|FGR_uc001bol.2_Silent_p.V79V|FGR_uc001bom.2_Silent_p.V79V	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	79	SH3.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		TGAACAGGGTCACCCCAATCC	0.562													10	24					0	0	1	0	0
FAM76A	199870	broad.mit.edu	37	1	28081763	28081763	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:28081763C>T	uc001boq.2	+	7	759	c.657C>T	c.(655-657)GCC>GCT	p.A219A	FAM76A_uc009vtb.2_Silent_p.A219A|FAM76A_uc001bor.2_Silent_p.A253A|FAM76A_uc001bos.2_Silent_p.A224A|FAM76A_uc001bot.2_Silent_p.A190A|FAM76A_uc010ofm.1_Silent_p.A139A	NM_152660	NP_689873	Q8TAV0	FA76A_HUMAN	hypothetical protein LOC199870 isoform 3	219	Potential.										0		Colorectal(325;0.000147)|all_lung(284;0.00181)|Lung NSC(340;0.00278)|Renal(390;0.00357)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0429)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-24)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;1.75e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00253)|KIRC - Kidney renal clear cell carcinoma(1967;0.00292)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0649)		TCATCATTGCCCAACTGAAGG	0.403													57	129					0	0	1	0	0
SMPDL3B	27293	broad.mit.edu	37	1	28282549	28282549	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:28282549G>A	uc001bpg.2	+	7	1152	c.961G>A	c.(961-963)GCC>ACC	p.A321T	SMPDL3B_uc001bpf.2_Missense_Mutation_p.A321T|SMPDL3B_uc010ofq.1_Missense_Mutation_p.A115T|SMPDL3B_uc010ofr.1_Missense_Mutation_p.A273T	NM_014474	NP_055289	Q92485	ASM3B_HUMAN	acid sphingomyelinase-like phosphodiesterase 3B	321					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity			ovary(3)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000431)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;5.68e-24)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00587)|READ - Rectum adenocarcinoma(331;0.055)		CAACAATCCAGCCATCCGGGT	0.567													14	55					0	0	1	0	0
SMPDL3B	27293	broad.mit.edu	37	1	28285047	28285047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:28285047G>A	uc001bpg.2	+	8	1257	c.1066G>A	c.(1066-1068)GAG>AAG	p.E356K	SMPDL3B_uc010ofq.1_Missense_Mutation_p.E150K|SMPDL3B_uc010ofr.1_Missense_Mutation_p.E308K|XKR8_uc001bph.1_5'Flank	NM_014474	NP_055289	Q92485	ASM3B_HUMAN	acid sphingomyelinase-like phosphodiesterase 3B	356					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity			ovary(3)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000431)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;5.68e-24)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00587)|READ - Rectum adenocarcinoma(331;0.055)		GCCGCGCTGGGAGCTCGAGTA	0.627													8	76					0	0	1	0	0
XKR8	55113	broad.mit.edu	37	1	28290032	28290032	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:28290032G>A	uc001bph.1	+	2	395	c.318G>A	c.(316-318)GGG>GGA	p.G106G		NM_018053	NP_060523	Q9H6D3	XKR8_HUMAN	XK, Kell blood group complex subunit-related	106						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00588)|all_lung(284;0.00645)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;4.72e-24)|Colorectal(126;1.52e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00572)|READ - Rectum adenocarcinoma(331;0.0526)		TGCGGCAGGGGCTGCTGGTGT	0.602													17	40					0	0	1	0	0
PTAFR	5724	broad.mit.edu	37	1	28477113	28477113	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:28477113G>A	uc001bpl.2	-	2	547	c.420C>T	c.(418-420)GTC>GTT	p.V140V	PTAFR_uc001bpm.3_Silent_p.V140V|PTAFR_uc009vte.2_Silent_p.V140V	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	140	Helical; Name=4; (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		CCACCCAGATGACCAAGGACA	0.577													29	86					0	0	1	0	0
SESN2	83667	broad.mit.edu	37	1	28598868	28598868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:28598868C>T	uc001bps.2	+	4	781	c.428C>T	c.(427-429)CCT>CTT	p.P143L		NM_031459	NP_113647	P58004	SESN2_HUMAN	sestrin 2	143					cell cycle arrest	cytoplasm|nucleus				skin(3)|ovary(2)|pancreas(1)|lung(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;4.76e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;2.98e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGGTGACCCTGAGTGGCTG	0.622													21	128					0	0	1	0	0
SESN2	83667	broad.mit.edu	37	1	28607230	28607230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:28607230C>T	uc001bps.2	+	10	1713	c.1360C>T	c.(1360-1362)CAC>TAC	p.H454Y		NM_031459	NP_113647	P58004	SESN2_HUMAN	sestrin 2	454					cell cycle arrest	cytoplasm|nucleus				skin(3)|ovary(2)|pancreas(1)|lung(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;4.76e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;2.98e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCCAGGTCCACGTGAACTT	0.612													13	66					0	0	1	0	0
RCC1	1104	broad.mit.edu	37	1	28861653	28861654	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:28861653_28861654CC>TT	uc001bqg.1	+	5	618_619	c.533_534CC>TT	c.(532-534)GCC>GTT	p.A178V	SNHG3-RCC1_uc001bqa.1_Missense_Mutation_p.A178V|SNHG3-RCC1_uc001bqb.1_Missense_Mutation_p.A178V|SNHG3-RCC1_uc001bqc.1_Missense_Mutation_p.A178V|RCC1_uc001bqe.1_Missense_Mutation_p.A195V|RCC1_uc001bqf.1_Missense_Mutation_p.A209V	NM_001269	NP_001260	P18754	RCC1_HUMAN	regulator of chromosome condensation 1 isoform	178	RCC1 3.				cell division|chromosome segregation|G1/S transition of mitotic cell cycle|mitosis|mitotic spindle organization|regulation of mitosis|regulation of S phase of mitotic cell cycle|spindle assembly|viral reproduction	condensed nuclear chromosome|cytoplasm|nuclear chromatin|nuclear membrane|nucleoplasm	histone binding|nucleosomal DNA binding|Ran guanyl-nucleotide exchange factor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000318)|all_lung(284;0.000434)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.00989)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|KIRC - Kidney renal clear cell carcinoma(1967;0.0101)|BRCA - Breast invasive adenocarcinoma(304;0.022)|READ - Rectum adenocarcinoma(331;0.0649)		GTAAAGGTGGCCTCAGGTGGGT	0.579													17	73					0	0	1	0	0
RCC1	1104	broad.mit.edu	37	1	28864346	28864346	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:28864346C>T	uc001bqg.1	+	10	1178	c.1093C>T	c.(1093-1095)CGT>TGT	p.R365C	SNHG3-RCC1_uc001bqa.1_Missense_Mutation_p.R365C|SNHG3-RCC1_uc001bqb.1_Missense_Mutation_p.R365C|SNHG3-RCC1_uc001bqc.1_Missense_Mutation_p.R365C|RCC1_uc001bqe.1_Missense_Mutation_p.R382C|RCC1_uc001bqf.1_Missense_Mutation_p.R396C	NM_001269	NP_001260	P18754	RCC1_HUMAN	regulator of chromosome condensation 1 isoform	365	RCC1 7.				cell division|chromosome segregation|G1/S transition of mitotic cell cycle|mitosis|mitotic spindle organization|regulation of mitosis|regulation of S phase of mitotic cell cycle|spindle assembly|viral reproduction	condensed nuclear chromosome|cytoplasm|nuclear chromatin|nuclear membrane|nucleoplasm	histone binding|nucleosomal DNA binding|Ran guanyl-nucleotide exchange factor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000318)|all_lung(284;0.000434)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.00989)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|KIRC - Kidney renal clear cell carcinoma(1967;0.0101)|BRCA - Breast invasive adenocarcinoma(304;0.022)|READ - Rectum adenocarcinoma(331;0.0649)		TCTTGCAGGTCGTGTTTTCGC	0.592													10	13					0	0	1	0	0
YTHDF2	51441	broad.mit.edu	37	1	29070059	29070059	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:29070059C>T	uc001brc.2	+	4	1774	c.1277C>T	c.(1276-1278)TCC>TTC	p.S426F	YTHDF2_uc001brd.2_Missense_Mutation_p.S423F|YTHDF2_uc010ofx.1_Missense_Mutation_p.S376F|YTHDF2_uc001bre.2_Missense_Mutation_p.S376F	NM_016258	NP_057342	Q9Y5A9	YTHD2_HUMAN	high glucose-regulated protein 8	426	YTH.				humoral immune response					ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000601)|all_lung(284;0.000771)|Breast(348;0.00502)|Renal(390;0.00758)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;5.46e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		ATTCACCGTTCCATTAAGTAT	0.423													9	104					0	0	1	0	0
OPRD1	4985	broad.mit.edu	37	1	29189342	29189342	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:29189342C>T	uc001brf.1	+	3	908	c.666C>T	c.(664-666)TTC>TTT	p.F222F		NM_000911	NP_000902	P41143	OPRD_HUMAN	opioid receptor, delta 1	222	Helical; Name=5; (Potential).				immune response|protein import into nucleus, translocation	integral to plasma membrane	delta-opioid receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000947)|all_lung(284;0.00131)|Renal(390;0.00758)|Breast(348;0.00765)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-07)|COAD - Colon adenocarcinoma(152;7.51e-06)|STAD - Stomach adenocarcinoma(196;0.00306)|BRCA - Breast invasive adenocarcinoma(304;0.0241)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)	Butorphanol(DB00611)|Codeine(DB00318)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Loperamide(DB00836)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pimozide(DB01100)|Propoxyphene(DB00647)	TCTTCGCCTTCGTGGTGCCCA	0.647													21	39					0	0	1	0	0
PTPRU	10076	broad.mit.edu	37	1	29587275	29587275	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:29587275A>T	uc001bru.2	+	7	1114	c.1004A>T	c.(1003-1005)CAC>CTC	p.H335L	PTPRU_uc001brv.2_Missense_Mutation_p.H335L|PTPRU_uc001brw.2_Missense_Mutation_p.H335L|PTPRU_uc009vtq.2_Missense_Mutation_p.H335L|PTPRU_uc009vtr.2_Missense_Mutation_p.H335L	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	335	Fibronectin type-III 1.|Extracellular (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GCTGAGGTGCACGCCGTCAGC	0.642													24	44					0	0	1	0	0
PTPRU	10076	broad.mit.edu	37	1	29642576	29642577	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:29642576_29642577CC>TT	uc001bru.2	+	25	3566_3567	c.3456_3457CC>TT	c.(3454-3459)ATCCCT>ATTTCT	p.P1153S	PTPRU_uc001brv.2_Missense_Mutation_p.P1149S|PTPRU_uc001brw.2_Missense_Mutation_p.P1143S|PTPRU_uc009vtq.2_Missense_Mutation_p.P1149S|PTPRU_uc009vtr.2_Missense_Mutation_p.P1140S	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1153	Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		AGACCACCATCCCTGTCAGTGA	0.545													17	59					0	0	1	0	0
PTPRU	10076	broad.mit.edu	37	1	29651802	29651802	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:29651802C>T	uc001bru.2	+	30	4352	c.4242C>T	c.(4240-4242)ACC>ACT	p.T1414T	PTPRU_uc001brv.2_Silent_p.T1410T|PTPRU_uc001brw.2_Silent_p.T1404T|PTPRU_uc009vtq.2_Silent_p.T1408T|PTPRU_uc009vtr.2_Silent_p.T1401T|PTPRU_uc001brx.2_Silent_p.T140T	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1414	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		CTGCCAAAACCCTCCGGAACT	0.612													49	125					0	0	1	0	0
LAPTM5	7805	broad.mit.edu	37	1	31206707	31206707	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:31206707C>T	uc001bsc.2	-	8	848	c.757G>A	c.(757-759)GGC>AGC	p.G253S		NM_006762	NP_006753	Q13571	LAPM5_HUMAN	lysosomal protein transmembrane 5	253	Pro-rich.				transport	integral to plasma membrane|lysosomal membrane					0		Colorectal(325;0.0199)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0966)|Medulloblastoma(700;0.151)|Ovarian(437;0.192)		STAD - Stomach adenocarcinoma(196;0.0196)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGCTGGGCCCCCCTCTGGG	0.602													10	29					0	0	1	0	0
PUM1	9698	broad.mit.edu	37	1	31441270	31441270	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:31441270G>A	uc001bsi.1	-	11	1689	c.1576C>T	c.(1576-1578)CCC>TCC	p.P526S	PUM1_uc001bsf.1_Missense_Mutation_p.P192S|PUM1_uc001bsg.1_Missense_Mutation_p.P339S|PUM1_uc001bsh.1_Missense_Mutation_p.P526S|PUM1_uc001bsj.1_Missense_Mutation_p.P527S|PUM1_uc010oga.1_Missense_Mutation_p.P430S|PUM1_uc001bsk.1_Missense_Mutation_p.P562S|PUM1_uc010ogb.1_Missense_Mutation_p.P467S|SNORD85_uc001bsl.1_5'Flank	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	526	Ala-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		GCCACAAGGGGATCCGTTTGC	0.532													22	60					0	0	1	0	0
NKAIN1	79570	broad.mit.edu	37	1	31656841	31656841	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:31656841G>A	uc010ogd.1	-	4	300	c.294C>T	c.(292-294)ACC>ACT	p.T98T	NKAIN1_uc001bsn.2_Silent_p.T54T|NKAIN1_uc010ogc.1_Silent_p.T27T	NM_024522	NP_078798	Q4KMZ8	NKAI1_HUMAN	Na+/K+ transporting ATPase interacting 1	98	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)|Breast(348;0.141)|all_neural(195;0.146)|Medulloblastoma(700;0.151)		STAD - Stomach adenocarcinoma(196;0.0184)|READ - Rectum adenocarcinoma(331;0.148)		ATGTGTTGAAGGTCATGATGA	0.612											OREG0004725	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	23					0	0	1	0	0
FABP3	2170	broad.mit.edu	37	1	31840289	31840289	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:31840289C>T	uc001bss.1	-	3	361	c.299G>A	c.(298-300)GGG>GAG	p.G100E		NM_004102	NP_004093	P05413	FABPH_HUMAN	fatty acid binding protein 3	100					negative regulation of cell proliferation					ovary(1)	1		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0629)|Breast(348;0.0707)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0185)|READ - Rectum adenocarcinoma(331;0.149)		GGTCTCTTGCCCGTCCCATTT	0.473													81	193					0	0	1	0	0
SERINC2	347735	broad.mit.edu	37	1	31896549	31896549	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:31896549C>T	uc010ogh.1	+	2	262	c.61C>T	c.(61-63)CTC>TTC	p.L21F	SERINC2_uc010ogg.1_Missense_Mutation_p.L18F|SERINC2_uc009vtw.1_Missense_Mutation_p.L17F|SERINC2_uc001bst.2_Missense_Mutation_p.L17F|SERINC2_uc001bsu.2_5'UTR|SERINC2_uc001bsv.2_5'UTR	NM_178865	NP_849196	Q96SA4	SERC2_HUMAN	tumor differentially expressed 2-like	17	Helical; (Potential).					integral to membrane					0		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0629)|Breast(348;0.0707)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0541)|READ - Rectum adenocarcinoma(331;0.151)		GGCGTCCTGCCTCTGCGGCTC	0.672													5	44					0	0	1	0	0
TINAGL1	64129	broad.mit.edu	37	1	32042974	32042974	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32042974C>T	uc001bta.2	+	2	351	c.225C>T	c.(223-225)CTC>CTT	p.L75L	TINAGL1_uc001bsz.2_Intron|TINAGL1_uc010ogi.1_Silent_p.L75L|TINAGL1_uc010ogj.1_Silent_p.L75L|TINAGL1_uc010ogk.1_Silent_p.L75L	NM_022164	NP_071447	Q9GZM7	TINAL_HUMAN	tubulointerstitial nephritis antigen-like 1	75	SMB.				endosome transport|immune response|proteolysis	extracellular region	cysteine-type endopeptidase activity|extracellular matrix structural constituent|polysaccharide binding|scavenger receptor activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		STAD - Stomach adenocarcinoma(196;0.0526)|READ - Rectum adenocarcinoma(331;0.145)		ACTGTGACCTCTTCTGCAACC	0.657													33	148					0	0	1	0	0
PEF1	553115	broad.mit.edu	37	1	32101117	32101117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32101117G>A	uc001bth.1	-	2	43	c.31C>T	c.(31-33)CCA>TCA	p.P11S	PEF1_uc001bte.1_5'Flank|PEF1_uc001btf.1_5'Flank|PEF1_uc001btg.1_5'UTR|PEF1_uc010ogm.1_Missense_Mutation_p.P11S	NM_012392	NP_036524	Q9UBV8	PEF1_HUMAN	penta-EF-hand domain containing 1	11					response to calcium ion	cytoplasm|membrane	calcium ion binding|protein heterodimerization activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)|all_neural(195;0.186)		STAD - Stomach adenocarcinoma(196;0.0546)		GCAGCTCCTGGGCAGCCCTGC	0.473													8	17					0	0	1	0	0
COL16A1	1307	broad.mit.edu	37	1	32126220	32126220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32126220C>T	uc001btk.1	-	62	4210	c.3845G>A	c.(3844-3846)GGA>GAA	p.G1282E	COL16A1_uc001bti.1_5'UTR|COL16A1_uc001btj.1_Missense_Mutation_p.G1080E	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	1282	Triple-helical region 2 (COL2) with 2 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		TCCCTGGGGTCCCATGGCACC	0.557													25	88					0	0	1	0	0
COL16A1	1307	broad.mit.edu	37	1	32145279	32145279	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32145279G>A	uc001btk.1	-	42	3091	c.2726C>T	c.(2725-2727)CCA>CTA	p.P909L	COL16A1_uc001btj.1_Missense_Mutation_p.P722L|COL16A1_uc001btl.3_Missense_Mutation_p.P893L	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	909	Triple-helical region 4 (COL4) with 2 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		GGGAATACCTGGTGGACCCTG	0.627													46	140					0	0	1	0	0
COL16A1	1307	broad.mit.edu	37	1	32151349	32151349	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32151349G>A	uc001btk.1	-	29	2272	c.1907C>T	c.(1906-1908)CCA>CTA	p.P636L	COL16A1_uc001btj.1_Missense_Mutation_p.P465L|COL16A1_uc001btl.3_Missense_Mutation_p.P636L	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	636	Nonhelical region 7 (NC7).				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		GGACAGGGCTGGGCACGGCTC	0.637													50	201					0	0	1	0	0
COL16A1	1307	broad.mit.edu	37	1	32157053	32157053	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32157053G>A	uc001btk.1	-	19	1728	c.1363C>T	c.(1363-1365)CCT>TCT	p.P455S	COL16A1_uc001btj.1_Missense_Mutation_p.P284S|COL16A1_uc001btl.3_Missense_Mutation_p.P455S	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	455	Triple-helical region 9 (COL9) with 3 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		GGGGGTCCAGGGAGGCCGGGG	0.667													4	47					0	0	1	0	0
COL16A1	1307	broad.mit.edu	37	1	32158230	32158230	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32158230G>A	uc001btk.1	-	15	1492	c.1127C>T	c.(1126-1128)CCG>CTG	p.P376L	COL16A1_uc001btj.1_Missense_Mutation_p.P205L|COL16A1_uc001btl.3_Missense_Mutation_p.P376L	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	376	Triple-helical region 9 (COL9) with 3 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		CTCTCCCTTCGGGCCTTCTGC	0.647													15	55					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32198639	32198639	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32198639G>A	uc001btn.2	-	26	3912	c.3558C>T	c.(3556-3558)CTC>CTT	p.L1186L	BAI2_uc001btm.2_Silent_p.L180L|BAI2_uc001btp.1_Silent_p.L180L|BAI2_uc010ogn.1_Silent_p.L156L|BAI2_uc010ogo.1_Silent_p.L795L|BAI2_uc010ogp.1_Silent_p.L1119L|BAI2_uc010ogq.1_Silent_p.L1153L|BAI2_uc001bto.2_Silent_p.L1186L	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	1186	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		AGACAGCAAAGAGGGCCTGGA	0.647													5	6					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32221810	32221810	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32221810G>A	uc001btn.2	-	4	982	c.628C>T	c.(628-630)CGC>TGC	p.R210C	BAI2_uc010ogp.1_Missense_Mutation_p.R198C|BAI2_uc010ogq.1_Missense_Mutation_p.R210C|BAI2_uc001bto.2_Missense_Mutation_p.R210C|BAI2_uc001btq.1_Missense_Mutation_p.R198C|BAI2_uc010ogr.1_Missense_Mutation_p.R198C	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	210	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		CCGGCAGCGCGGCCACACTCC	0.647													7	51					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32256892	32256892	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32256892C>T	uc001bts.1	-	16	3021	c.2963G>A	c.(2962-2964)GGC>GAC	p.G988D	SPOCD1_uc001btr.1_3'UTR|SPOCD1_uc001btt.2_Intron|SPOCD1_uc001btu.2_Intron|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	988					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		AGCCCAAAGGCCTGCGGGGAA	0.582													6	24					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32259377	32259377	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32259377C>T	uc001bts.1	-	12	2563	c.2505G>A	c.(2503-2505)AGG>AGA	p.R835R	SPOCD1_uc001btr.1_5'Flank|SPOCD1_uc001btt.2_Silent_p.R140R|SPOCD1_uc001btu.2_Silent_p.R835R|SPOCD1_uc001btv.2_Silent_p.R328R	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	835					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		GAGACAACTCCCTGGTTTTGG	0.592													74	112					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32259443	32259443	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32259443C>T	uc001bts.1	-	12	2497	c.2439G>A	c.(2437-2439)GGG>GGA	p.G813G	SPOCD1_uc001btr.1_5'Flank|SPOCD1_uc001btt.2_Silent_p.G118G|SPOCD1_uc001btu.2_Silent_p.G813G|SPOCD1_uc001btv.2_Silent_p.G306G	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	813					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		AGATATTGTCCCCGCAGCTCT	0.577													55	185					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32280440	32280440	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32280440C>T	uc001bts.1	-	2	553	c.495G>A	c.(493-495)AGG>AGA	p.R165R	SPOCD1_uc001btu.2_Silent_p.R165R|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	165					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CTCTGGCCTCCCTGGGCCTGA	0.617													48	78					0	0	1	0	0
KHDRBS1	10657	broad.mit.edu	37	1	32503507	32503507	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32503507G>T	uc001bub.2	+	6	1083	c.977G>T	c.(976-978)GGT>GTT	p.G326V	KHDRBS1_uc001bua.1_Missense_Mutation_p.G287V|KHDRBS1_uc001buc.1_RNA	NM_006559	NP_006550	Q07666	KHDR1_HUMAN	KH domain containing, RNA binding, signal	326	Arg/Gly-rich.				cell cycle arrest|cell proliferation|cell surface receptor linked signaling pathway|G2/M transition of mitotic cell cycle|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of RNA export from nucleus|transcription, DNA-dependent	membrane|nucleus	DNA binding|RNA binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				ATCACCAGAGGTGCCACTGTG	0.577													66	143					7.59065e-32	7.63722e-32	1	1	0
KPNA6	23633	broad.mit.edu	37	1	32622504	32622504	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32622504C>T	uc001bug.2	+	3	277	c.189C>T	c.(187-189)TTC>TTT	p.F63F	KPNA6_uc001buh.2_5'UTR|KPNA6_uc010ogx.1_Silent_p.F60F|KPNA6_uc010ogy.1_Silent_p.F68F|KPNA6_uc009vtz.2_Silent_p.F2F	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	63					NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CTGCCATGTTCGATAGTCTTC	0.453													30	81					0	0	1	0	0
KPNA6	23633	broad.mit.edu	37	1	32635512	32635512	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32635512C>T	uc001bug.2	+	13	1362	c.1274C>T	c.(1273-1275)CCC>CTC	p.P425L	KPNA6_uc001buh.2_Missense_Mutation_p.P200L|KPNA6_uc010ogx.1_Missense_Mutation_p.P422L|KPNA6_uc010ogy.1_Missense_Mutation_p.P430L|KPNA6_uc009vtz.2_Missense_Mutation_p.P320L	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	425	ARM 9.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				TGCATCAAACCCCTATGTGAC	0.542													50	144					0	0	1	0	0
LCK	3932	broad.mit.edu	37	1	32742026	32742026	+	Silent	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32742026T>G	uc001bux.2	+	8	858	c.720T>G	c.(718-720)GTT>GTG	p.V240V	LCK_uc001buy.2_Silent_p.V240V|LCK_uc001buz.2_Silent_p.V240V|LCK_uc010ohc.1_Silent_p.V284V|LCK_uc001bva.2_Intron	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	240	Interaction with PTPRH.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	AGTGGGAGGTTCCCAGGGAGA	0.662			T	TRB@	T-ALL								13	37					0	0	1	0	0
LCK	3932	broad.mit.edu	37	1	32745514	32745514	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32745514G>A	uc001bux.2	+	11	1252	c.1114G>A	c.(1114-1116)GTG>ATG	p.V372M	LCK_uc001buy.2_Missense_Mutation_p.V372M|LCK_uc001buz.2_Missense_Mutation_p.V402M|LCK_uc010ohc.1_Missense_Mutation_p.V416M|LCK_uc001bva.2_Missense_Mutation_p.V379M	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	372	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	CAACATTCTGGTGTCTGACAC	0.517			T	TRB@	T-ALL								42	79					0	0	1	0	0
LCK	3932	broad.mit.edu	37	1	32751184	32751184	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32751184C>T	uc001bux.2	+	13	1535	c.1397C>T	c.(1396-1398)CCA>CTA	p.P466L	LCK_uc001buy.2_Missense_Mutation_p.P466L|LCK_uc001buz.2_Missense_Mutation_p.P496L|LCK_uc001bva.2_Missense_Mutation_p.P473L	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	466	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	GACAACTGTCCAGAGGAGCTG	0.592			T	TRB@	T-ALL								15	74					0	0	1	0	0
LCK	3932	broad.mit.edu	37	1	32751281	32751281	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:32751281C>T	uc001bux.2	+	13	1632	c.1494C>T	c.(1492-1494)TTC>TTT	p.F498F	LCK_uc001buy.2_Silent_p.F498F|LCK_uc001buz.2_Silent_p.F528F|LCK_uc001bva.2_Silent_p.F505F	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	498	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	AGGACTTCTTCACGGCCACAG	0.612			T	TRB@	T-ALL								9	20					0	0	1	0	0
KIAA1522	57648	broad.mit.edu	37	1	33234287	33234287	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33234287C>T	uc001bvv.2	+	4	456	c.320C>T	c.(319-321)TCC>TTC	p.S107F	KIAA1522_uc001bvu.1_Missense_Mutation_p.S166F|KIAA1522_uc010ohm.1_Missense_Mutation_p.S118F|KIAA1522_uc010ohn.1_Missense_Mutation_p.S107F	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	107											0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				GACAACATCTCCTTCTGCAGT	0.562													13	55					0	0	1	0	0
KIAA1522	57648	broad.mit.edu	37	1	33235498	33235498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33235498G>A	uc001bvv.2	+	6	677	c.541G>A	c.(541-543)GAG>AAG	p.E181K	KIAA1522_uc001bvu.1_Missense_Mutation_p.E240K|KIAA1522_uc010ohm.1_Missense_Mutation_p.E192K|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	181											0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				GAATGAGCGTGAGGCACCAGG	0.701													8	25					0	0	1	0	0
KIAA1522	57648	broad.mit.edu	37	1	33236535	33236535	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33236535G>A	uc001bvv.2	+	6	1714	c.1578G>A	c.(1576-1578)TCG>TCA	p.S526S	KIAA1522_uc001bvu.1_Silent_p.S585S|KIAA1522_uc010ohm.1_Silent_p.S537S|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	526	Pro-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				GTGGATACTCGAGCCAAAGTG	0.662													20	32					0	0	1	0	0
FNDC5	252995	broad.mit.edu	37	1	33333418	33333418	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33333418C>T	uc001bwg.2	-	4	425	c.210G>A	c.(208-210)GGG>GGA	p.G70G	FNDC5_uc001bwf.1_Silent_p.G70G	NM_153756	NP_715637	Q8NAU1	FNDC5_HUMAN	fibronectin type III domain containing 5	129	Extracellular (Potential).					integral to membrane|peroxisomal membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				GTTGGTTCCTCCCCATCTCTT	0.567													15	57					0	0	1	0	0
HPCA	3208	broad.mit.edu	37	1	33359166	33359166	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33359166G>A	uc001bwh.2	+	3	460	c.420G>A	c.(418-420)GAG>GAA	p.E140E		NM_002143	NP_002134	P84074	HPCA_HUMAN	hippocalcin	140							actin binding|calcium ion binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				AGATGCCGGAGGACGAGTCGA	0.647													9	50					0	0	1	0	0
AK2	204	broad.mit.edu	37	1	33478956	33478956	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33478956G>A	uc001bwp.1	-	6	588	c.546C>T	c.(544-546)GCC>GCT	p.A182A	uc001bwn.2_Intron|AK2_uc001bwo.1_Silent_p.A182A|AK2_uc010ohq.1_Silent_p.A174A|AK2_uc009vud.1_Silent_p.A140A|AK2_uc010ohr.1_Silent_p.A134A|AK2_uc001bwq.1_Silent_p.A134A	NM_001625	NP_001616	P54819	KAD2_HUMAN	adenylate kinase 2 isoform a	182					nucleobase, nucleoside and nucleotide interconversion	mitochondrial intermembrane space	adenylate kinase activity|ATP binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				GGATTTTCAAGGCCTTTTCAT	0.512													24	36					0	0	1	0	0
PHC2	1912	broad.mit.edu	37	1	33797043	33797043	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33797043G>A	uc001bxg.1	-	11	1963	c.1909C>T	c.(1909-1911)CCC>TCC	p.P637S	PHC2_uc001bxh.1_Missense_Mutation_p.P609S|PHC2_uc009vuh.1_Missense_Mutation_p.P638S|PHC2_uc001bxe.1_Missense_Mutation_p.P102S|PHC2_uc001bxf.1_Missense_Mutation_p.P52S	NM_198040	NP_932157	Q8IXK0	PHC2_HUMAN	polyhomeotic-like 2 isoform a	637	FCS-type.				multicellular organismal development	PcG protein complex	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AGTTTGAGGGGAGCACCCTCC	0.532													57	119					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	33985438	33985438	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33985438G>A	uc001bxn.1	-	68	10307	c.10278C>T	c.(10276-10278)GGC>GGT	p.G3426G	CSMD2_uc001bxm.1_Silent_p.G3570G	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3426	Helical; (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGAGCACGAAGCCCGCAATAA	0.627													15	53					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	33998705	33998705	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33998705C>T	uc001bxn.1	-	63	9713	c.9684G>A	c.(9682-9684)GAG>GAA	p.E3228E	CSMD2_uc001bxm.1_Silent_p.E3372E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3228	Sushi 26.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGGTGCGGTGCTCGGAGCCAC	0.662													17	22					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	33998741	33998741	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:33998741G>A	uc001bxn.1	-	63	9677	c.9648C>T	c.(9646-9648)TCC>TCT	p.S3216S	CSMD2_uc001bxm.1_Silent_p.S3360S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3216	Sushi 26.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCTCCTGGCAGGAGTAGATGA	0.652													11	27					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34002668	34002668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34002668G>A	uc001bxn.1	-	61	9430	c.9401C>T	c.(9400-9402)CCT>CTT	p.P3134L	CSMD2_uc001bxm.1_Missense_Mutation_p.P3278L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3134	Sushi 25.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGGCACACCAGGGTCCGCACA	0.517													29	52					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34002691	34002691	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34002691C>T	uc001bxn.1	-	61	9407	c.9378G>A	c.(9376-9378)CCG>CCA	p.P3126P	CSMD2_uc001bxm.1_Silent_p.P3270P	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3126	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGGTCAGGGTCGGATCTGGAT	0.517													23	57					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34003130	34003130	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34003130G>A	uc001bxn.1	-	60	9308	c.9279C>T	c.(9277-9279)TCC>TCT	p.S3093S	CSMD2_uc001bxm.1_Silent_p.S3237S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3093	Extracellular (Potential).|Sushi 24.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGCAGGAGAAGGAGACAGATG	0.607													28	74					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34006240	34006240	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34006240G>A	uc001bxn.1	-	59	9113	c.9084C>T	c.(9082-9084)TTC>TTT	p.F3028F	CSMD2_uc001bxm.1_Silent_p.F3172F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3028	Sushi 23.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGCCCCACATGAAGTCAGACC	0.602													33	87					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34038291	34038291	+	Missense_Mutation	SNP	G	A	A	rs139241831		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34038291G>A	uc001bxn.1	-	51	7612	c.7583C>T	c.(7582-7584)GCT>GTT	p.A2528V	CSMD2_uc001bxm.1_Missense_Mutation_p.A2526V	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2528	Sushi 14.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACAGGAAAGAGCTAGCAAAAG	0.448													15	63					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34052145	34052145	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34052145C>T	uc001bxn.1	-	47	7045	c.7016G>A	c.(7015-7017)GGA>GAA	p.G2339E	CSMD2_uc001bxm.1_Missense_Mutation_p.G2337E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2339	Sushi 13.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAGGTAGGTTCCAAGTTTGCA	0.488													17	67					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34071466	34071466	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34071466C>T	uc001bxn.1	-	42	6375	c.6346G>A	c.(6346-6348)GAA>AAA	p.E2116K	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxo.1_Intron	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2116	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				attgaaccttcacaacCAGGA	0.279													10	25					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34087766	34087766	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34087766C>T	uc001bxn.1	-	37	5736	c.5707_splice	c.e37+1	p.T1903_splice	CSMD2_uc001bxm.1_Splice_Site_p.T1943_splice|CSMD2_uc001bxo.1_Splice_Site_p.T816_splice	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2							integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGGATTCTCACTTTTGTACTC	0.507													76	153					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34090712	34090712	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34090712G>A	uc001bxn.1	-	34	5348	c.5319C>T	c.(5317-5319)ATC>ATT	p.I1773I	CSMD2_uc001bxm.1_Silent_p.I1813I|CSMD2_uc001bxo.1_Silent_p.I686I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1773	Sushi 10.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGAGGCACTCGATCTCTGGCG	0.657													27	66					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34100921	34100921	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34100921C>T	uc001bxn.1	-	31	4888	c.4859G>A	c.(4858-4860)GGG>GAG	p.G1620E	CSMD2_uc001bxm.1_Missense_Mutation_p.G1660E|CSMD2_uc001bxo.1_Missense_Mutation_p.G533E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1620	Extracellular (Potential).|CUB 10.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ATACTGTCCCCCACAGGGGGC	0.552											OREG0013349	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	32					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34102044	34102044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34102044C>T	uc001bxn.1	-	30	4794	c.4765G>A	c.(4765-4767)GAA>AAA	p.E1589K	CSMD2_uc001bxm.1_Missense_Mutation_p.E1629K|CSMD2_uc001bxo.1_Missense_Mutation_p.E502K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1589	Extracellular (Potential).|Sushi 9.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCCTCAACTTCGTAGCCCCCG	0.622													12	29					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34123547	34123547	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34123547G>A	uc001bxn.1	-	27	4355	c.4326C>T	c.(4324-4326)ATC>ATT	p.I1442I	CSMD2_uc001bxm.1_Silent_p.I1482I|CSMD2_uc001bxo.1_Silent_p.I355I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1442	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCTTTGTACCGATGCATGTTG	0.587													27	83					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34158556	34158556	+	Silent	SNP	G	A	A	rs142510996		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34158556G>A	uc001bxn.1	-	25	3935	c.3906C>T	c.(3904-3906)ATC>ATT	p.I1302I	CSMD2_uc001bxm.1_Silent_p.I1342I|CSMD2_uc001bxo.1_Silent_p.I215I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1302	CUB 8.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCTCTGCTTCGATGGTCCAGA	0.567													19	175					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34164423	34164424	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34164423_34164424CC>TT	uc001bxn.1	-	24	3763_3764	c.3734_3735GG>AA	c.(3733-3735)CGG>CAA	p.R1245Q	CSMD2_uc001bxm.1_Missense_Mutation_p.R1285Q|CSMD2_uc001bxo.1_Missense_Mutation_p.R158Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1245	Sushi 7.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCTCACTACCCCGCAGGCTGTA	0.609													10	105					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34164539	34164539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34164539C>T	uc001bxn.1	-	24	3648	c.3619G>A	c.(3619-3621)GAA>AAA	p.E1207K	CSMD2_uc001bxm.1_Missense_Mutation_p.E1247K|CSMD2_uc001bxo.1_Missense_Mutation_p.E120K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1207	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TTGATGAGTTCAAAGCCTGGT	0.512													4	39					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34166234	34166234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34166234C>T	uc001bxn.1	-	23	3525	c.3496G>A	c.(3496-3498)GTT>ATT	p.V1166I	CSMD2_uc001bxm.1_Missense_Mutation_p.V1206I|CSMD2_uc001bxo.1_Missense_Mutation_p.V79I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1166	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGGCTAAAAACTCCCAGCAAA	0.498													45	95					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34174758	34174758	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34174758C>T	uc001bxn.1	-	22	3416	c.3387G>A	c.(3385-3387)CAG>CAA	p.Q1129Q	CSMD2_uc001bxm.1_Silent_p.Q1169Q|CSMD2_uc001bxo.1_Silent_p.Q42Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1129	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CTGGCTGGGTCTGGATGGAGT	0.473													31	81					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34174801	34174801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34174801G>A	uc001bxn.1	-	22	3373	c.3344C>T	c.(3343-3345)CCT>CTT	p.P1115L	CSMD2_uc001bxm.1_Missense_Mutation_p.P1155L|CSMD2_uc001bxo.1_Missense_Mutation_p.P28L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1115	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTAGTTCACAGGAAAGTTGGG	0.483													19	56					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34181935	34181935	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34181935G>A	uc001bxn.1	-	20	3077	c.3048C>T	c.(3046-3048)TTC>TTT	p.F1016F	CSMD2_uc001bxm.1_Silent_p.F1056F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1016	Extracellular (Potential).|CUB 6.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AATCAGAGATGAAGCGGACCT	0.542													9	67					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34182085	34182085	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34182085G>A	uc001bxn.1	-	20	2927	c.2898C>T	c.(2896-2898)TTC>TTT	p.F966F	CSMD2_uc001bxm.1_Silent_p.F1006F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	966	Extracellular (Potential).|CUB 6.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGAAGGTGTGGAAAGTGAAGA	0.542													8	17					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34312544	34312544	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34312544C>T	uc001bxn.1	-	6	883	c.854G>A	c.(853-855)CGA>CAA	p.R285Q	CSMD2_uc001bxm.1_Missense_Mutation_p.R325Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	285	CUB 2.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GAAGTGCAGTCGCAGCCAGTT	0.612													21	47					0	0	1	0	0
HMGB4	127540	broad.mit.edu	37	1	34329958	34329958	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34329958G>A	uc001bxp.2	+	2	1909	c.166G>A	c.(166-168)GAA>AAA	p.E56K	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_5'UTR	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	56						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CTCAAAGCATGAAAAGGCCAA	0.423													48	109					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34554765	34554765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34554765G>A	uc001bxn.1	-	2	126	c.97C>T	c.(97-99)CCC>TCC	p.P33S	CSMD2_uc001bxm.1_Missense_Mutation_p.P73S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	33	CUB 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTCCCATTGGGACCGTGCAGT	0.532													14	31					0	0	1	0	0
C1orf94	84970	broad.mit.edu	37	1	34663181	34663181	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34663181G>A	uc001bxs.3	+	2	505	c.106G>A	c.(106-108)GGC>AGC	p.G36S	C1orf94_uc001bxt.2_Missense_Mutation_p.G226S	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	36							protein binding				0		Myeloproliferative disorder(586;0.0393)				AGAGGACAGGGGCCGCATCCT	0.542													21	57					0	0	1	0	0
C1orf94	84970	broad.mit.edu	37	1	34663440	34663440	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34663440G>A	uc001bxs.3	+	2	764	c.365G>A	c.(364-366)AGG>AAG	p.R122K	C1orf94_uc001bxt.2_Missense_Mutation_p.R312K	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	122							protein binding				0		Myeloproliferative disorder(586;0.0393)				GCTCAGAAGAGGCAGCTCCCA	0.612													15	39					0	0	1	0	0
C1orf94	84970	broad.mit.edu	37	1	34663471	34663471	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34663471C>T	uc001bxs.3	+	2	795	c.396C>T	c.(394-396)TCC>TCT	p.S132S	C1orf94_uc001bxt.2_Silent_p.S322S	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	132							protein binding				0		Myeloproliferative disorder(586;0.0393)				AGATCTGTTCCAAGCCCAAGG	0.612													18	35					0	0	1	0	0
C1orf94	84970	broad.mit.edu	37	1	34666412	34666412	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34666412G>A	uc001bxs.3	+	3	878	c.479G>A	c.(478-480)GGG>GAG	p.G160E	C1orf94_uc001bxt.2_Missense_Mutation_p.G350E	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	160							protein binding				0		Myeloproliferative disorder(586;0.0393)				AAGGGTCAAGGGAGCCTCTTT	0.597													40	89					0	0	1	0	0
C1orf94	84970	broad.mit.edu	37	1	34684295	34684295	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:34684295C>T	uc001bxs.3	+	7	1559	c.1160C>T	c.(1159-1161)TCG>TTG	p.S387L	C1orf94_uc001bxt.2_Missense_Mutation_p.S577L	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	387							protein binding				0		Myeloproliferative disorder(586;0.0393)				AGGTTCGGCTCGACATCCGGA	0.448													22	85					0	0	1	0	0
GJB5	2709	broad.mit.edu	37	1	35223201	35223201	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35223201C>T	uc001bxu.2	+	2	370	c.270C>T	c.(268-270)CTC>CTT	p.L90L	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	90	Helical; (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				CCTCACTGCTCGTGGTCATGC	0.617													18	77					0	0	1	0	0
GJB5	2709	broad.mit.edu	37	1	35223226	35223226	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35223226G>A	uc001bxu.2	+	2	395	c.295G>A	c.(295-297)GAG>AAG	p.E99K	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	99	Cytoplasmic (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				GGCCTACCGGGAGGTTCAGGA	0.612													25	77					0	0	1	0	0
GJB4	127534	broad.mit.edu	37	1	35227159	35227159	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35227159G>A	uc001bxv.1	+	2	674	c.304G>A	c.(304-306)GAG>AAG	p.E102K	GJB4_uc001bxw.3_Missense_Mutation_p.E102K	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	102	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				CGAGGAACGCGAGCGCAAGCA	0.647													13	22					0	0	1	0	0
GJB4	127534	broad.mit.edu	37	1	35227279	35227279	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35227279G>A	uc001bxv.1	+	2	794	c.424G>A	c.(424-426)GAT>AAT	p.D142N	GJB4_uc001bxw.3_Missense_Mutation_p.D142N	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	142	Helical; (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				GGCCGCCGTGGATGCTGGCTT	0.612													18	54					0	0	1	0	0
DLGAP3	58512	broad.mit.edu	37	1	35332721	35332721	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35332721G>A	uc001byc.2	-	9	2649	c.2649C>T	c.(2647-2649)ATC>ATT	p.I883I		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	883					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				TCACATCCTCGATGGAGAGCT	0.582											OREG0013353	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	55	128					0	0	1	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370539	35370539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35370539C>T	uc001byc.2	-	1	446	c.446G>A	c.(445-447)GGG>GAG	p.G149E		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	149					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				TGGCCCGGGCCCTGCCCCTGC	0.627													12	25					0	0	1	0	0
ZMYM6	9204	broad.mit.edu	37	1	35453185	35453185	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35453185G>A	uc001byh.2	-	16	3726	c.3498C>T	c.(3496-3498)TTC>TTT	p.F1166F	uc001byd.3_5'Flank|uc001bye.2_5'Flank|ZMYM6_uc001byf.1_Intron|ZMYM6_uc010oht.1_Silent_p.F1069F	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	1166					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				AAAATGAAGggaacatgtcat	0.179													17	38					0	0	1	0	0
ZMYM1	79830	broad.mit.edu	37	1	35579437	35579437	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35579437C>T	uc001bym.2	+	11	2154	c.2006C>T	c.(2005-2007)TCA>TTA	p.S669L	ZMYM1_uc001byn.2_Missense_Mutation_p.S669L|ZMYM1_uc010ohu.1_Missense_Mutation_p.S650L|ZMYM1_uc001byo.2_Missense_Mutation_p.S309L|ZMYM1_uc009vut.2_Missense_Mutation_p.S594L	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	669						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CCACAAAAATCATCAAAGGCT	0.368													21	51					0	0	1	0	0
SFPQ	6421	broad.mit.edu	37	1	35652632	35652632	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35652632G>A	uc001bys.2	-	9	2049	c.1956C>T	c.(1954-1956)ACC>ACT	p.T652T	SFPQ_uc001byr.2_RNA	NM_005066	NP_005057	P23246	SFPQ_HUMAN	splicing factor proline/glutamine rich	652					alternative nuclear mRNA splicing, via spliceosome|DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|nucleotide binding|protein binding|protein binding|RNA binding		SFPQ/TFE3(6)	kidney(4)|soft_tissue(2)|ovary(1)|skin(1)	8		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				AACCACTCATGGTTGCTGGTG	0.443			T	TFE3	papillary renal cell								39	67					0	0	1	0	0
ZMYM4	9202	broad.mit.edu	37	1	35824855	35824855	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35824855C>T	uc001byt.2	+	3	495	c.415C>T	c.(415-417)CCT>TCT	p.P139S	ZMYM4_uc009vuu.2_Missense_Mutation_p.P107S|ZMYM4_uc001byu.2_Intron|ZMYM4_uc009vuv.2_5'UTR	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	139					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AAAAGACTTTCCTAAACAATT	0.308													11	40					0	0	1	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35928300	35928300	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:35928300G>A	uc001byx.2	-	8	1474	c.1216C>T	c.(1216-1218)CGG>TGG	p.R406W	KIAA0319L_uc010ohv.1_Missense_Mutation_p.R48W|KIAA0319L_uc010ohw.1_RNA	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	406	Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ATGGGGGGCCGATTCTTACGG	0.448													23	64					0	0	1	0	0
C1orf216	127703	broad.mit.edu	37	1	36181917	36181917	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36181917G>A	uc001bzh.1	-	2	494	c.6C>T	c.(4-6)TTC>TTT	p.F2F		NM_152374	NP_689587	Q8TAB5	CA216_HUMAN	hypothetical protein LOC127703	2										skin(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				GCTGGATGGCGAACATCTAGC	0.582											OREG0013357	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	19					0	0	1	0	0
CLSPN	63967	broad.mit.edu	37	1	36202572	36202572	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36202572G>A	uc001bzi.2	-	24	3932	c.3852C>T	c.(3850-3852)GTC>GTT	p.V1284V	CLSPN_uc009vux.2_Silent_p.V1220V	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	1284					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GTGTATGAAAGACAAAGTTTC	0.468													49	93					0	0	1	0	0
EIF2C1	26523	broad.mit.edu	37	1	36358229	36358229	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36358229G>A	uc001bzl.2	+	3	494	c.281G>A	c.(280-282)GGA>GAA	p.G94E	EIF2C1_uc001bzk.2_Missense_Mutation_p.G19E|EIF2C1_uc009vuy.2_5'Flank	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	94					negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GTGTATGATGGAAAGAAGAAC	0.527													32	60					0	0	1	0	0
EIF2C1	26523	broad.mit.edu	37	1	36381037	36381037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36381037C>T	uc001bzl.2	+	15	2135	c.1922C>T	c.(1921-1923)TCC>TTC	p.S641F	EIF2C1_uc001bzk.2_Missense_Mutation_p.S566F|EIF2C1_uc009vuy.2_RNA	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	641	Piwi.				negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GAAGACTTGTCCTACATGGTG	0.547													31	97					0	0	1	0	0
COL8A2	1296	broad.mit.edu	37	1	36563655	36563655	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36563655C>T	uc001bzv.1	-	2	1634	c.1627G>A	c.(1627-1629)GGC>AGC	p.G543S	COL8A2_uc001bzw.1_Missense_Mutation_p.G478S	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	543	Nonhelical region (NC1).				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AGGTGCAAGCCTGCGATGCCA	0.726													8	20					0	0	1	0	0
TRAPPC3	27095	broad.mit.edu	37	1	36605347	36605347	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36605347G>A	uc001bzx.2	-	3	302	c.214C>T	c.(214-216)CGG>TGG	p.R72W	TRAPPC3_uc001bzy.2_Missense_Mutation_p.R26W	NM_014408	NP_055223	O43617	TPPC3_HUMAN	trafficking protein particle complex 3	72						endoplasmic reticulum	guanylate cyclase activity|heme binding			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0393)				GCAGTTTCCCGAAAGTCATGG	0.488													18	43					0	0	1	0	0
THRAP3	9967	broad.mit.edu	37	1	36751979	36751979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36751979C>T	uc001cae.3	+	4	372	c.148C>T	c.(148-150)CGT>TGT	p.R50C	THRAP3_uc001caf.3_Missense_Mutation_p.R50C|THRAP3_uc001cag.1_Missense_Mutation_p.R50C	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	50	Arg-rich.|Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TTCTAGGTCTCGTTCCAGATC	0.398			T	USP6	aneurysmal bone cysts								50	93					0	0	1	0	0
THRAP3	9967	broad.mit.edu	37	1	36752667	36752667	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36752667G>A	uc001cae.3	+	4	1060	c.836G>A	c.(835-837)AGC>AAC	p.S279N	THRAP3_uc001caf.3_Missense_Mutation_p.S279N|THRAP3_uc001cag.1_Missense_Mutation_p.S279N	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	279	Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCACTTTCCAGCACATCCCAG	0.612			T	USP6	aneurysmal bone cysts								44	102					0	0	1	0	0
THRAP3	9967	broad.mit.edu	37	1	36755299	36755299	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36755299C>T	uc001cae.3	+	5	1903	c.1679C>T	c.(1678-1680)TCC>TTC	p.S560F	THRAP3_uc001caf.3_Missense_Mutation_p.S560F|THRAP3_uc001cag.1_Missense_Mutation_p.S560F	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	560					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGAAAGTCTTCCTTTTCCATT	0.502			T	USP6	aneurysmal bone cysts								28	100					0	0	1	0	0
STK40	83931	broad.mit.edu	37	1	36823848	36823848	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36823848G>A	uc001cak.1	-	5	741	c.334C>T	c.(334-336)CTC>TTC	p.L112F	STK40_uc001cal.1_Missense_Mutation_p.L117F|STK40_uc001cam.1_Missense_Mutation_p.L112F|STK40_uc009vva.1_Missense_Mutation_p.L112F|STK40_uc001can.1_Missense_Mutation_p.L112F	NM_032017	NP_114406	Q8N2I9	STK40_HUMAN	serine/threonine kinase 40	112	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)				ACCTGGAAGAGGCCGTGGTGG	0.647													25	27					0	0	1	0	0
CSF3R	1441	broad.mit.edu	37	1	36933246	36933246	+	Missense_Mutation	SNP	G	A	A	rs144754091		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36933246G>A	uc001caw.1	-	15	2049	c.1871C>T	c.(1870-1872)TCG>TTG	p.S624L	CSF3R_uc001cat.1_Missense_Mutation_p.S187L|CSF3R_uc009vvc.1_Missense_Mutation_p.S153L|CSF3R_uc001cau.1_Missense_Mutation_p.S24L|CSF3R_uc001cav.1_Missense_Mutation_p.S624L|CSF3R_uc001cax.1_Missense_Mutation_p.S624L|CSF3R_uc001cay.1_Intron	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	624	Extracellular (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	GTGTAGCTCCGACCCCTCTGC	0.602													8	35					0	0	1	0	0
CSF3R	1441	broad.mit.edu	37	1	36933525	36933525	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36933525G>A	uc001caw.1	-	14	1940	c.1762C>T	c.(1762-1764)CAT>TAT	p.H588Y	CSF3R_uc001cat.1_Missense_Mutation_p.H151Y|CSF3R_uc009vvc.1_Missense_Mutation_p.H117Y|CSF3R_uc001cau.1_5'UTR|CSF3R_uc001cav.1_Missense_Mutation_p.H588Y|CSF3R_uc001cax.1_Missense_Mutation_p.H588Y|CSF3R_uc001cay.1_Missense_Mutation_p.H588Y	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	588	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	TCCAGGCCATGGAGGACAAAG	0.627													6	61					0	0	1	0	0
CSF3R	1441	broad.mit.edu	37	1	36933542	36933542	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36933542G>A	uc001caw.1	-	14	1923	c.1745C>T	c.(1744-1746)TCC>TTC	p.S582F	CSF3R_uc001cat.1_Missense_Mutation_p.S145F|CSF3R_uc009vvc.1_Missense_Mutation_p.S111F|CSF3R_uc001cau.1_5'UTR|CSF3R_uc001cav.1_Missense_Mutation_p.S582F|CSF3R_uc001cax.1_Missense_Mutation_p.S582F|CSF3R_uc001cay.1_Missense_Mutation_p.S582F	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	582	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	AAAGCCACGGGAGGAGGCATT	0.632													10	55					0	0	1	0	0
CSF3R	1441	broad.mit.edu	37	1	36939451	36939451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36939451C>T	uc001caw.1	-	5	577	c.399G>A	c.(397-399)ATG>ATA	p.M133I	CSF3R_uc009vvc.1_5'Flank|CSF3R_uc001cau.1_5'Flank|CSF3R_uc001cav.1_Missense_Mutation_p.M133I|CSF3R_uc001cax.1_Missense_Mutation_p.M133I|CSF3R_uc001cay.1_Missense_Mutation_p.M133I	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	133	Fibronectin type-III 1.|Extracellular (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	TTGTGAGGTTCATGAGGCAGG	0.592													22	58					0	0	1	0	0
CSF3R	1441	broad.mit.edu	37	1	36945041	36945041	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:36945041G>A	uc001caw.1	-	3	235	c.57C>T	c.(55-57)CTC>CTT	p.L19L	CSF3R_uc001cav.1_Silent_p.L19L|CSF3R_uc001cax.1_Silent_p.L19L|CSF3R_uc001cay.1_Silent_p.L19L	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	19					cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	CACTTCCGGGGAGCAGCAGGA	0.542													20	50					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37271804	37271804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:37271804C>T	uc001caz.2	-	14	2350	c.2215G>A	c.(2215-2217)GAG>AAG	p.E739K	GRIK3_uc001cba.1_Missense_Mutation_p.E739K	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	739	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GTGGTGGACTCCATGAGCAGC	0.622													23	88					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37271906	37271906	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:37271906C>T	uc001caz.2	-	14	2248	c.2113G>A	c.(2113-2115)GAG>AAG	p.E705K	GRIK3_uc001cba.1_Missense_Mutation_p.E705K	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	705	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CACATCTTCTCGAAGGTGGAG	0.602													7	28					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37282783	37282783	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:37282783G>A	uc001caz.2	-	13	2104	c.1969C>T	c.(1969-1971)CTG>TTG	p.L657L	GRIK3_uc001cba.1_Silent_p.L657L	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	657	Helical; (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	AAGGCAGCCAGGTTGGCCGTG	0.552													36	57					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37324718	37324718	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:37324718G>A	uc001caz.2	-	7	1230	c.1095C>T	c.(1093-1095)TTC>TTT	p.F365F	GRIK3_uc001cba.1_Silent_p.F365F	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	365	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CCTCCTTGATGAAGTTCATGA	0.517													18	94					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37325573	37325573	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:37325573T>G	uc001caz.2	-	6	967	c.832A>C	c.(832-834)AAC>CAC	p.N278H	GRIK3_uc001cba.1_Missense_Mutation_p.N278H	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	278	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CCTGTCAGGTTCACGCCTGAG	0.567													23	70					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37325588	37325588	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:37325588G>A	uc001caz.2	-	6	952	c.817C>T	c.(817-819)CGC>TGC	p.R273C	GRIK3_uc001cba.1_Missense_Mutation_p.R273C	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	273	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CCTGAGTAGCGGTAGGGCTCC	0.572													17	73					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37346323	37346323	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:37346323G>A	uc001caz.2	-	3	597	c.462C>T	c.(460-462)CCC>CCT	p.P154P	GRIK3_uc001cba.1_Silent_p.P154P	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	154	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	AGGCGTAGTCGGGGTAGAGGT	0.607													48	118					0	0	1	0	0
DNALI1	7802	broad.mit.edu	37	1	38027255	38027255	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38027255G>A	uc001cbj.2	+	4	571	c.561G>A	c.(559-561)CAG>CAA	p.Q187Q	DNALI1_uc010oie.1_RNA	NM_003462	NP_003453	O14645	IDLC_HUMAN	dynein, axonemal, light intermediate chain 1	165					cellular component movement|single fertilization	axonemal dynein complex	microtubule motor activity			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CTGCCTACCAGACCCTGTACG	0.597											OREG0013380	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	33					0	0	1	0	0
GNL2	29889	broad.mit.edu	37	1	38034744	38034744	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38034744G>A	uc001cbk.2	-	13	1739	c.1576C>T	c.(1576-1578)CTC>TTC	p.L526F		NM_013285	NP_037417	Q13823	NOG2_HUMAN	guanine nucleotide binding protein-like 2	526					ribosome biogenesis	nucleolus	GTP binding|GTPase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)				ACTCGTGTGAGAATCTGCTGC	0.473													36	81					0	0	1	0	0
RSPO1	284654	broad.mit.edu	37	1	38078497	38078497	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38078497C>T	uc001cbl.1	-	8	1510	c.722G>A	c.(721-723)AGA>AAA	p.R241K	RSPO1_uc001cbm.1_Missense_Mutation_p.R241K|RSPO1_uc009vvf.1_Missense_Mutation_p.R214K|RSPO1_uc009vvg.1_Missense_Mutation_p.R178K	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	241					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCCCTTGCGTCTTCGAGAGCC	0.652													38	109					0	0	1	0	0
C1orf109	54955	broad.mit.edu	37	1	38155359	38155359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38155359G>A	uc001cbp.2	-	2	384	c.194C>T	c.(193-195)GCC>GTC	p.A65V	C1orf109_uc010oig.1_Missense_Mutation_p.A128V|C1orf109_uc001cbo.2_Missense_Mutation_p.A127V|C1orf109_uc001cbq.1_Missense_Mutation_p.A65V|CDCA8_uc001cbr.2_5'Flank|CDCA8_uc001cbs.2_5'Flank	NM_017850	NP_060320	Q9NX04	CA109_HUMAN	hypothetical protein LOC54955	65											0		Myeloproliferative disorder(586;0.0393)				ATCTGGGAAGGCCCGAAGCGC	0.622													41	81					0	0	1	0	0
CDCA8	55143	broad.mit.edu	37	1	38173996	38173996	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38173996C>T	uc001cbr.2	+	11	908	c.801C>T	c.(799-801)AAC>AAT	p.N267N	CDCA8_uc001cbs.2_Silent_p.N267N	NM_018101	NP_060571	Q53HL2	BOREA_HUMAN	cell division cycle associated 8	267					cell division|chromosome organization|mitotic metaphase|mitotic prometaphase	chromosome passenger complex|chromosome, centromeric region|cytosol|nucleolus|spindle	protein binding			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CTTTTTAGAACCGTCTCGCCC	0.507													24	59					0	0	1	0	0
EPHA10	284656	broad.mit.edu	37	1	38185201	38185201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38185201C>T	uc009vvi.2	-	15	2727	c.2641G>A	c.(2641-2643)GAC>AAC	p.D881N	EPHA10_uc001cbt.2_RNA|EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	881	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGCCAGCAGTCGAGCATTAGT	0.632													9	50					0	0	1	0	0
EPHA10	284656	broad.mit.edu	37	1	38186485	38186485	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38186485C>T	uc009vvi.2	-	12	2264	c.2178G>A	c.(2176-2178)ATG>ATA	p.M726I	EPHA10_uc001cbt.2_5'Flank|EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	726	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCCCATGGCTCATGTACTCGG	0.572													30	49					0	0	1	0	0
EPHA10	284656	broad.mit.edu	37	1	38192815	38192815	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38192815G>A	uc009vvi.2	-	8	1817	c.1731C>T	c.(1729-1731)CTC>CTT	p.L577L	EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	577	Helical; (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AGCCCAGGACGAGGAGGGCCG	0.617													25	42					0	0	1	0	0
EPHA10	284656	broad.mit.edu	37	1	38227191	38227191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38227191C>T	uc009vvi.2	-	3	822	c.736G>A	c.(736-738)GGG>AGG	p.G246R	EPHA10_uc001cbw.3_Missense_Mutation_p.G246R	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	246	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCAGGCTCCCCTTCCGAGTGC	0.731													4	31					0	0	1	0	0
EPHA10	284656	broad.mit.edu	37	1	38227465	38227465	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38227465C>T	uc009vvi.2	-	3	548	c.462G>A	c.(460-462)ACG>ACA	p.T154T	EPHA10_uc001cbw.3_Silent_p.T154T	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	154	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCGCCGCGATCGTGTCGATTT	0.662													23	31					0	0	1	0	0
INPP5B	3633	broad.mit.edu	37	1	38355359	38355359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38355359G>A	uc001ccg.1	-	9	761	c.667C>T	c.(667-669)CGC>TGC	p.R223C	INPP5B_uc009vvk.1_Missense_Mutation_p.R164C|INPP5B_uc001ccf.1_Missense_Mutation_p.R59C|INPP5B_uc010oij.1_RNA	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	303					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GTGGAGGAGCGAACCATGTCA	0.388													44	140					0	0	1	0	0
SF3A3	10946	broad.mit.edu	37	1	38435103	38435103	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38435103G>A	uc001cci.2	-	14	1328	c.1204C>T	c.(1204-1206)CTA>TTA	p.L402L	SF3A3_uc010oik.1_Silent_p.L349L	NM_006802	NP_006793	Q12874	SF3A3_HUMAN	splicing factor 3a, subunit 3	402					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nuclear speck	nucleic acid binding|protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				TTGATATTTAGGCCATGAAGC	0.398													11	96					0	0	1	0	0
UTP11L	51118	broad.mit.edu	37	1	38484756	38484756	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:38484756T>A	uc001ccn.3	+	5	459	c.368T>A	c.(367-369)CTC>CAC	p.L123H	UTP11L_uc009vvm.2_Missense_Mutation_p.L54H|UTP11L_uc010oil.1_RNA|UTP11L_uc001cco.3_Missense_Mutation_p.L54H	NM_016037	NP_057121	Q9Y3A2	UTP11_HUMAN	UTP11-like, U3 small nucleolar	123					induction of apoptosis|nerve growth factor receptor signaling pathway|nervous system development|rRNA processing	cytoplasm|extracellular space|nucleolus|small-subunit processome	protein binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AAATCAGAGCTCCATCTGCTG	0.363													25	82					0	0	1	0	0
GJA9	81025	broad.mit.edu	37	1	39341152	39341152	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:39341152C>T	uc001cct.1	-	2	900	c.619G>A	c.(619-621)GAA>AAA	p.E207K	RRAGC_uc001ccr.2_5'Flank|MYCBP_uc001ccs.2_5'Flank	NM_030772	NP_110399	P57773	CXA9_HUMAN	gap junction protein, alpha 9, 59kDa	207	Extracellular (Potential).				cell communication	connexon complex|integral to membrane					0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			ATTGTCTTTTCTGTTGGTCTT	0.338													29	57					0	0	1	0	0
RHBDL2	54933	broad.mit.edu	37	1	39381281	39381281	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:39381281C>A	uc001ccu.1	-	3	576	c.348G>T	c.(346-348)AAG>AAT	p.K116N	RHBDL2_uc010oin.1_Missense_Mutation_p.K116N|RHBDL2_uc010oio.1_Missense_Mutation_p.K196N|RHBDL2_uc001ccv.2_Missense_Mutation_p.K116N	NM_017821	NP_060291	Q9NX52	RHBL2_HUMAN	rhomboid protease 2	116					proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity				0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			CTTCCTCCCTCTTCTCAGGAC	0.448													21	83					1.22574e-08	1.22928e-08	1	1	0
MACF1	23499	broad.mit.edu	37	1	39549961	39549961	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:39549961G>A	uc010ois.1	+	3	276	c.71G>A	c.(70-72)CGA>CAA	p.R24Q	MACF1_uc010oir.1_Missense_Mutation_p.D20N	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	24	Actin-binding.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CGGAGTGAGCGATCTTACAGG	0.627													24	59					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39782184	39782184	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:39782184C>T	uc010ois.1	+	29	3791	c.3586C>T	c.(3586-3588)CAT>TAT	p.H1196Y	MACF1_uc001cda.1_Missense_Mutation_p.H1104Y|MACF1_uc001cdc.1_Missense_Mutation_p.H283Y|MACF1_uc009vvq.1_Missense_Mutation_p.H253Y|MACF1_uc001cdb.1_Missense_Mutation_p.H283Y	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1196	LRR 7.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TCTGGAGGCCCATTGGTCGAC	0.443													43	120					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39788323	39788323	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:39788323C>T	uc010ois.1	+	33	4293	c.4088C>T	c.(4087-4089)TCG>TTG	p.S1363L	MACF1_uc001cda.1_Missense_Mutation_p.S1271L|MACF1_uc001cdc.1_Missense_Mutation_p.S450L|MACF1_uc009vvq.1_Missense_Mutation_p.S420L|MACF1_uc001cdb.1_Missense_Mutation_p.S450L	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1363					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTTGTGGAATCGCAGCAGAAA	0.463													39	97					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39893908	39893908	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:39893908C>T	uc010oiu.1	+	27	12203	c.12072C>T	c.(12070-12072)TTC>TTT	p.F4024F	MACF1_uc010ois.1_Silent_p.F3522F|MACF1_uc001cda.1_Silent_p.F3409F|MACF1_uc001cdc.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GTTCAGTGTTCGTAAAGGATT	0.448													13	33					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39903468	39903468	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:39903468C>T	uc010oiu.1	+	36	13468	c.13337C>T	c.(13336-13338)CCT>CTT	p.P4446L	MACF1_uc010ois.1_Missense_Mutation_p.P3944L	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AAAATTGAGCCTATGTTGGAG	0.423													41	118					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39934344	39934344	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:39934344C>T	uc010oiu.1	+	61	17289	c.17158C>T	c.(17158-17160)CGC>TGC	p.R5720C	MACF1_uc010ois.1_Missense_Mutation_p.R5212C|MACF1_uc001cde.1_Missense_Mutation_p.R89C|MACF1_uc001cdf.1_Missense_Mutation_p.R95C|MACF1_uc001cdg.2_Missense_Mutation_p.R3C|MACF1_uc001cdh.2_Missense_Mutation_p.R3C	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7170	C-terminal tail (By similarity).|GAR.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CGTGATGGTTCGCGTTGGTGG	0.433													28	58					0	0	1	0	0
PABPC4	8761	broad.mit.edu	37	1	40027429	40027429	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40027429G>A	uc010oiv.1	-	15	2774	c.1876C>T	c.(1876-1878)CAT>TAT	p.H626Y	PPIEL_uc001cdk.2_5'Flank|PABPC4_uc001cdl.2_Missense_Mutation_p.H642Y|PABPC4_uc001cdm.2_Missense_Mutation_p.H613Y	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	626	PABC.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			TTGGCATGATGAGCCTGTAGA	0.502													19	59					0	0	1	0	0
PABPC4	8761	broad.mit.edu	37	1	40030920	40030920	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40030920G>A	uc010oiv.1	-	8	2001	c.1103C>T	c.(1102-1104)GCC>GTC	p.A368V	PABPC4_uc001cdl.2_Missense_Mutation_p.A368V|PABPC4_uc001cdm.2_Missense_Mutation_p.A368V	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	368	RRM 4.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CTTCCTCTGGGCCAGGGCAAC	0.498													5	50					0	0	1	0	0
HEYL	26508	broad.mit.edu	37	1	40092724	40092724	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40092724G>A	uc001cdp.2	-	5	493	c.442C>T	c.(442-444)CGC>TGC	p.R148C	HEYL_uc010oiw.1_Missense_Mutation_p.R120C	NM_014571	NP_055386	Q9NQ87	HEYL_HUMAN	hairy/enhancer-of-split related with YRPW	148	Orange.				multicellular organismal development|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.1e-18)|Epithelial(16;2.77e-17)|all cancers(16;5.64e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			GAGAGAAGGCGAATCCGGACG	0.627													18	48					0	0	1	0	0
HEYL	26508	broad.mit.edu	37	1	40105220	40105220	+	Silent	SNP	C	T	T	rs139547686	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40105220C>T	uc001cdp.2	-	1	129	c.78G>A	c.(76-78)CTG>CTA	p.L26L		NM_014571	NP_055386	Q9NQ87	HEYL_HUMAN	hairy/enhancer-of-split related with YRPW	26					multicellular organismal development|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.1e-18)|Epithelial(16;2.77e-17)|all cancers(16;5.64e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			GCCCTTACCTCAGCTGGCCCT	0.741													6	15					0	0	1	0	0
HPCAL4	51440	broad.mit.edu	37	1	40149780	40149780	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40149780G>A	uc001cdr.2	-	3	327	c.207C>T	c.(205-207)TTC>TTT	p.F69F	HPCAL4_uc010oix.1_Intron	NM_016257	NP_057341	Q9UM19	HPCL4_HUMAN	hippocalcin-like protein 4	69	EF-hand 2.				central nervous system development	intracellular	calcium ion binding			central_nervous_system(1)	1	all_cancers(7;4.65e-13)|Lung NSC(20;2.88e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CGAAGGTGCGGAAAGCGTGCT	0.677													20	43					0	0	1	0	0
OXCT2	64064	broad.mit.edu	37	1	40236066	40236066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40236066C>T	uc001ceb.1	-	1	955	c.862G>A	c.(862-864)GAA>AAA	p.E288K	BMP8B_uc001cdz.1_Intron|BMP8B_uc001cea.1_Intron|OXCT2_uc009vvu.1_Missense_Mutation_p.E282K	NM_022120	NP_071403	Q9BYC2	SCOT2_HUMAN	3-oxoacid CoA transferase 2 precursor	288					ketone body catabolic process	microtubule-based flagellum|mitochondrion	3-oxoacid CoA-transferase activity			pancreas(1)	1	all_cancers(7;5.56e-14)|all_lung(5;3.88e-17)|all_epithelial(6;3.78e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;1.92e-17)|all cancers(16;4.03e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)		Succinic acid(DB00139)	TCTCCATCTTCCTCTTTCAGG	0.517											OREG0013400	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	241					0	0	1	0	0
MYCL1	4610	broad.mit.edu	37	1	40363568	40363568	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40363568C>T	uc001cer.1	-	3	788	c.571G>A	c.(571-573)GTG>ATG	p.V191M	MYCL1_uc001ces.1_Missense_Mutation_p.V191M	NM_001033082	NP_001028254	P12524	MYCL1_HUMAN	l-myc-1 proto-oncogene isoform 1	191						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|liver(1)	2	all_cancers(7;1.73e-14)|all_lung(5;2.77e-17)|all_epithelial(6;6.81e-17)|Lung SC(1;2.85e-13)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.51e-19)|Epithelial(16;3.36e-18)|all cancers(16;8.43e-17)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			TCTGCTCGCACCGTGATGGTG	0.502			A		small cell lung 								22	91					0	0	1	0	0
MFSD2A	84879	broad.mit.edu	37	1	40424494	40424494	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40424494C>T	uc001cev.2	+	3	570	c.389C>T	c.(388-390)CCC>CTC	p.P130L	MFSD2A_uc010ojb.1_Missense_Mutation_p.P80L|MFSD2A_uc001ceu.2_Missense_Mutation_p.P117L|MFSD2A_uc010ojc.1_Intron|MFSD2A_uc009vvy.2_RNA	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	130	Helical; (Potential).				transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						CGCCTTATGCCCTGGTGAGTA	0.582													81	177					0	0	1	0	0
MFSD2A	84879	broad.mit.edu	37	1	40430940	40430940	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40430940C>T	uc001cev.2	+	4	631	c.450C>T	c.(448-450)CCC>CCT	p.P150P	MFSD2A_uc010ojb.1_Silent_p.P100P|MFSD2A_uc001ceu.2_Silent_p.P137P|MFSD2A_uc010ojc.1_5'UTR|MFSD2A_uc009vvy.2_RNA|MFSD2A_uc001cex.2_5'Flank	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	150					transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						GGTTCGTGCCCGACTTCCCAC	0.567													6	100					0	0	1	0	0
PPT1	5538	broad.mit.edu	37	1	40555169	40555170	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40555169_40555170GG>AA	uc001cfb.2	-	5	680_681	c.448_449CC>TT	c.(448-450)CCT>TTT	p.P150F	PPT1_uc010ojf.1_Missense_Mutation_p.P100F|PPT1_uc010ojg.1_Missense_Mutation_p.P47F|PPT1_uc009vwa.2_RNA	NM_000310	NP_000301	P50897	PPT1_HUMAN	palmitoyl-protein thioesterase 1 isoform 1	150					brain development|cofactor metabolic process|cofactor transport|DNA fragmentation involved in apoptotic nuclear change|lysosomal lumen acidification|membrane raft organization|negative regulation of cell growth|negative regulation of neuron apoptosis|neuron development|pinocytosis|positive regulation of pinocytosis|positive regulation of receptor-mediated endocytosis|protein depalmitoylation|protein transport|receptor-mediated endocytosis|regulation of synapse structure and activity|sphingolipid catabolic process|visual perception	axon|cytosol|Golgi apparatus|lysosome|membrane fraction|membrane raft|nucleus|synaptic vesicle	palmitoyl-(protein) hydrolase activity|palmitoyl-CoA hydrolase activity			ovary(1)	1	Lung NSC(20;3.43e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1e-18)|Epithelial(16;3.6e-17)|all cancers(16;1.1e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGGGCATCGAGGGAGTCCAAAA	0.317													18	68					0	0	1	0	0
RLF	6018	broad.mit.edu	37	1	40702463	40702463	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40702463C>T	uc001cfc.3	+	8	2120	c.2089C>T	c.(2089-2091)CAA>TAA	p.Q697*	RLF_uc001cfd.3_Nonsense_Mutation_p.Q388*	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	697					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			AGCTGAACACCAAAATAATGA	0.388													32	95					0	0	1	0	0
COL9A2	1298	broad.mit.edu	37	1	40773171	40773171	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40773171C>T	uc001cfh.1	-	19	1025	c.955G>A	c.(955-957)GGC>AGC	p.G319S	COL9A2_uc001cfi.1_Missense_Mutation_p.G138S	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor	319	Triple-helical region 3 (COL3).				axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			CCTGCACTGCCCTGGGATAGA	0.592													10	23					0	0	1	0	0
COL9A2	1298	broad.mit.edu	37	1	40773888	40773888	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40773888C>T	uc001cfh.1	-	17	946	c.876G>A	c.(874-876)GGG>GGA	p.G292G	COL9A2_uc001cfi.1_Silent_p.G111G	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor	292	Triple-helical region 3 (COL3).				axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			GGCCTGTGATCCCCTGGGGTC	0.612													13	26					0	0	1	0	0
ZNF643	65243	broad.mit.edu	37	1	40922631	40922631	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40922631C>T	uc001cfn.1	+	3	525	c.228C>T	c.(226-228)TTC>TTT	p.F76F	ZNF643_uc001cfl.1_5'UTR|ZNF643_uc001cfm.1_5'UTR	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	76	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			TGTTAACCTTCAAGGACGTAT	0.488													12	23					0	0	1	0	0
DEM1	64789	broad.mit.edu	37	1	40980428	40980428	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:40980428C>T	uc001cfp.2	+	3	417	c.212C>T	c.(211-213)TCA>TTA	p.S71L	DEM1_uc001cfq.2_Missense_Mutation_p.S71L|DEM1_uc001cfr.2_Missense_Mutation_p.S71L|DEM1_uc001cfs.2_Missense_Mutation_p.S71L	NM_022774	NP_073611	Q9H790	EXO5_HUMAN	defects in morphology 1 homolog	71							DNA binding|exonuclease activity				0						GATATATTATCACCCATGGAG	0.428													41	147					0	0	1	0	0
RIMS3	9783	broad.mit.edu	37	1	41101655	41101655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:41101655G>A	uc001cfu.1	-	4	761	c.292C>T	c.(292-294)CGG>TGG	p.R98W	RIMS3_uc001cfv.1_Missense_Mutation_p.R98W	NM_014747	NP_055562	Q9UJD0	RIMS3_HUMAN	regulating synaptic membrane exocytosis 3	98					neurotransmitter transport	cell junction|synapse					0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.47e-17)			CGTGTGACCCGGCTCCGCATC	0.682													21	50					0	0	1	0	0
KCNQ4	9132	broad.mit.edu	37	1	41298734	41298734	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:41298734T>G	uc001cgh.1	+	11	1644	c.1562T>G	c.(1561-1563)CTC>CGC	p.L521R	KCNQ4_uc001cgi.1_Missense_Mutation_p.L467R	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	521	Cytoplasmic.				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			CAGTGTGAGCTCACGGTGGAC	0.602													14	65					0	0	1	0	0
KCNQ4	9132	broad.mit.edu	37	1	41303402	41303402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:41303402C>T	uc001cgh.1	+	13	1893	c.1811C>T	c.(1810-1812)CCC>CTC	p.P604L	KCNQ4_uc001cgi.1_Missense_Mutation_p.P550L	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	604	Cytoplasmic.|A-domain (Tetramerization).				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			GACAAGGGGCCCTCCGACGCG	0.647													7	18					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	41976634	41976634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:41976634C>T	uc001cgz.3	-	9	7922	c.6709G>A	c.(6709-6711)GAG>AAG	p.E2237K	HIVEP3_uc001cha.3_Missense_Mutation_p.E2236K|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	2237					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TCCTGGGCCTCCCGGGCCCCT	0.697													14	52					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	41979410	41979410	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:41979410C>T	uc001cgz.3	-	8	6695	c.5482G>A	c.(5482-5484)GAC>AAC	p.D1828N	HIVEP3_uc001cha.3_Missense_Mutation_p.D1828N|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1828	Acidic 3.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TGGAACAGGTCGTCACTGGTT	0.532													9	33					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42045550	42045551	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42045550_42045551GG>AA	uc001cgz.3	-	4	6131_6132	c.4918_4919CC>TT	c.(4918-4920)CCG>TTG	p.P1640L	HIVEP3_uc001cha.3_Missense_Mutation_p.P1640L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1640					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGAAACCCCCGGAAGGTTGGGG	0.49													38	62					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42046640	42046641	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42046640_42046641GG>AA	uc001cgz.3	-	4	5041_5042	c.3828_3829CC>TT	c.(3826-3831)TCCCCC>TCTTCC	p.P1277S	HIVEP3_uc001cha.3_Missense_Mutation_p.P1277S|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1277					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TCTGTGCTGGGGGAGAGGCCAG	0.614													5	49					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42046936	42046936	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42046936A>T	uc001cgz.3	-	4	4746	c.3533T>A	c.(3532-3534)ATG>AAG	p.M1178K	HIVEP3_uc001cha.3_Missense_Mutation_p.M1178K|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1178					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				AAGTGGGGGCATGGAGTATGG	0.577													38	127					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047037	42047038	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42047037_42047038GG>AA	uc001cgz.3	-	4	4644_4645	c.3431_3432CC>TT	c.(3430-3432)TCC>TTT	p.S1144F	HIVEP3_uc001cha.3_Missense_Mutation_p.S1144F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1144					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				AGGAGAAAAGGGAGACTGGTGG	0.584													51	111					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047558	42047558	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42047558G>A	uc001cgz.3	-	4	4124	c.2911C>T	c.(2911-2913)CTG>TTG	p.L971L	HIVEP3_uc001cha.3_Silent_p.L971L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	971	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TGGGTGCCCAGGGGTTTGGGG	0.617													16	89					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42048690	42048690	+	Silent	SNP	G	A	A	rs35586296		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42048690G>A	uc001cgz.3	-	4	2992	c.1779C>T	c.(1777-1779)ATC>ATT	p.I593I	HIVEP3_uc001cha.3_Silent_p.I593I|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	593	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				AAGGTAATTCGATTGCCGGCT	0.582													29	88					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42049251	42049251	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42049251G>A	uc001cgz.3	-	4	2431	c.1218C>T	c.(1216-1218)CCC>CCT	p.P406P	HIVEP3_uc001cha.3_Silent_p.P406P|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	406	Ser-rich.|No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TGGTGTTTGGGGGGCTGACCT	0.592													17	99					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42050067	42050067	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42050067C>T	uc001cgz.3	-	4	1615	c.402G>A	c.(400-402)GTG>GTA	p.V134V	HIVEP3_uc001cha.3_Silent_p.V134V|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	134				FV -> LL (in Ref. 1; AAK01082).	positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GCCCAGGGGCCACGAAGGAGC	0.612													52	107					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42050073	42050073	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42050073G>A	uc001cgz.3	-	4	1609	c.396C>T	c.(394-396)TCC>TCT	p.S132S	HIVEP3_uc001cha.3_Silent_p.S132S|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	132					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGGCCACGAAGGAGCCAGAGG	0.607													51	106					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42050262	42050262	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42050262G>A	uc001cgz.3	-	4	1420	c.207C>T	c.(205-207)GGC>GGT	p.G69G	HIVEP3_uc001cha.3_Silent_p.G69G|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	69					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TCTCCTGAGAGCCTTCCCTAA	0.637													70	162					0	0	1	0	0
RIMKLA	284716	broad.mit.edu	37	1	42875687	42875687	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42875687C>T	uc001chi.2	+	4	652	c.514C>T	c.(514-516)CAC>TAC	p.H172Y		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	172	ATP-grasp.|ATP (By similarity).				protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						AGATAAACATCACCTCTCTGA	0.498													57	185					0	0	1	0	0
ZMYND12	84217	broad.mit.edu	37	1	42901011	42901011	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42901011G>A	uc001chj.2	-	6	1033	c.763C>T	c.(763-765)CTC>TTC	p.L255F	ZMYND12_uc010ojt.1_Missense_Mutation_p.L145F	NM_032257	NP_115633	Q9H0C1	ZMY12_HUMAN	zinc finger, MYND-type containing 12 isoform 1	255						intracellular	zinc ion binding			ovary(1)	1	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCCTGTGAGAGGACTTGATAG	0.473													71	193					0	0	1	0	0
ZMYND12	84217	broad.mit.edu	37	1	42914141	42914141	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42914141G>A	uc001chj.2	-	3	691	c.421C>T	c.(421-423)CTT>TTT	p.L141F	ZMYND12_uc010ojt.1_Intron	NM_032257	NP_115633	Q9H0C1	ZMY12_HUMAN	zinc finger, MYND-type containing 12 isoform 1	141						intracellular	zinc ion binding			ovary(1)	1	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CACTCACCAAGGCTGGCCTCG	0.532													6	21					0	0	1	0	0
PPCS	79717	broad.mit.edu	37	1	42925347	42925347	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42925347C>T	uc001chl.2	+	3	750	c.686C>T	c.(685-687)TCC>TTC	p.S229F	PPCS_uc001chk.2_Missense_Mutation_p.S56F	NM_024664	NP_078940	Q9HAB8	PPCS_HUMAN	phosphopantothenoylcysteine synthetase isoform	229					coenzyme biosynthetic process|pantothenate metabolic process	cytosol	phosphopantothenate--cysteine ligase activity				0	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TTTATAATTTCCTTTAAGTTG	0.388													11	125					0	0	1	0	0
PPCS	79717	broad.mit.edu	37	1	42925368	42925368	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:42925368C>T	uc001chl.2	+	3	771	c.707C>T	c.(706-708)CCC>CTC	p.P236L	PPCS_uc001chk.2_Missense_Mutation_p.P63L	NM_024664	NP_078940	Q9HAB8	PPCS_HUMAN	phosphopantothenoylcysteine synthetase isoform	236					coenzyme biosynthetic process|pantothenate metabolic process	cytosol	phosphopantothenate--cysteine ligase activity				0	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GAGACTGACCCCGCCATTGTA	0.403													35	116					0	0	1	0	0
CLDN19	149461	broad.mit.edu	37	1	43203960	43203960	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43203960G>A	uc001cht.1	-	3	604	c.413C>T	c.(412-414)TCG>TTG	p.S138L	CLDN19_uc001chu.2_Missense_Mutation_p.S138L|CLDN19_uc010ojv.1_Intron	NM_148960	NP_683763	Q8N6F1	CLD19_HUMAN	claudin 19 isoform a	138	Helical; (Potential).				calcium-independent cell-cell adhesion|response to stimulus|visual perception	basolateral plasma membrane|integral to membrane|tight junction	identical protein binding				0	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGCATACCACGAGACAGCAGT	0.612													15	71					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	43352383	43352383	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43352383C>T	uc001cij.1	+	4		c.285C>T								Homo sapiens cDNA clone IMAGE:5170739.																		TTGTCTTCCCCCTCGTTGCTG	0.552													7	23					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	43352829	43352829	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43352829G>A	uc001cij.1	+	4		c.731G>A								Homo sapiens cDNA clone IMAGE:5170739.																		CCGCGTGGAGGAGCGGCGAGA	0.592													10	16					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	43353119	43353119	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43353119C>T	uc001cij.1	+	4		c.1021C>T								Homo sapiens cDNA clone IMAGE:5170739.																		GGATGAAGTTCCTGCAGATGG	0.682													7	31					0	0	1	0	0
SLC2A1	6513	broad.mit.edu	37	1	43394917	43394917	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43394917G>A	uc001cik.2	-	7	1461	c.936C>T	c.(934-936)GGC>GGT	p.G312G		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	312	Helical; Name=8; (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	CGATACCGGAGCCAATGGTGG	0.587													7	29					0	0	1	0	0
TMEM125	128218	broad.mit.edu	37	1	43738463	43738463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43738463G>A	uc001cir.2	+	4	640	c.70G>A	c.(70-72)GAG>AAG	p.E24K	EBNA1BP2_uc001cio.2_5'Flank|TMEM125_uc001cis.2_Missense_Mutation_p.E24K	NM_144626	NP_653227	Q96AQ2	TM125_HUMAN	transmembrane protein 125	24						integral to membrane				breast(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGAGCAGGTGGAGCTGTGGTG	0.721													8	8					0	0	1	0	0
TIE1	7075	broad.mit.edu	37	1	43773519	43773519	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43773519G>A	uc001ciu.2	+	7	1045	c.966G>A	c.(964-966)CAG>CAA	p.Q322Q	TIE1_uc010okd.1_Silent_p.Q322Q|TIE1_uc010oke.1_Silent_p.Q277Q|TIE1_uc009vwq.2_Silent_p.Q278Q|TIE1_uc010okf.1_Intron|TIE1_uc010okg.1_Intron|TIE1_uc010okc.1_Intron	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	322	EGF-like 3.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCCAGTGTCAGAATGGTGGCA	0.547													21	57					0	0	1	0	0
TIE1	7075	broad.mit.edu	37	1	43774687	43774687	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43774687C>T	uc001ciu.2	+	8	1152	c.1073C>T	c.(1072-1074)TCA>TTA	p.S358L	TIE1_uc010okd.1_Missense_Mutation_p.S358L|TIE1_uc010oke.1_Missense_Mutation_p.S313L|TIE1_uc009vwq.2_Missense_Mutation_p.S314L|TIE1_uc010okf.1_Missense_Mutation_p.S3L|TIE1_uc010okg.1_Missense_Mutation_p.S3L|TIE1_uc010okc.1_Intron	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	358	Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AACATGGCCTCAGAACTGGAG	0.602													15	70					0	0	1	0	0
TIE1	7075	broad.mit.edu	37	1	43778170	43778170	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43778170G>A	uc001ciu.2	+	12	1904	c.1825G>A	c.(1825-1827)GGA>AGA	p.G609R	TIE1_uc010okd.1_Missense_Mutation_p.G609R|TIE1_uc010oke.1_Missense_Mutation_p.G564R|TIE1_uc009vwq.2_Missense_Mutation_p.G565R|TIE1_uc010okf.1_Missense_Mutation_p.G254R|TIE1_uc010okg.1_Missense_Mutation_p.G254R	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	609	Fibronectin type-III 2.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCTCCTGACGGGACTCACGCC	0.711													13	44					0	0	1	0	0
MPL	4352	broad.mit.edu	37	1	43803534	43803534	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43803534C>T	uc001ciw.2	+	1	60	c.15C>T	c.(13-15)GCC>GCT	p.A5A	MPL_uc001civ.2_Silent_p.A5A|MPL_uc009vwr.2_Silent_p.A5A	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	5					cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCTCCTGGGCCCTCTTCATGG	0.632			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						7	18					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43869432	43869432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43869432C>T	uc009vws.1	+	3	398	c.314C>T	c.(313-315)TCT>TTT	p.S105F	C1orf84_uc001cjh.2_Missense_Mutation_p.S103F|C1orf84_uc001cji.1_RNA			Q5T011	SZT2_HUMAN	Homo sapiens mRNA for KIAA0467 protein, partial cds.	105						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CTTAGCCCATCTACTGGCATT	0.547													47	125					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43897964	43897964	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43897964C>T	uc001cjk.1	+	22	3061	c.2599C>T	c.(2599-2601)CCT>TCT	p.P867S		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1766						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCTCCATCTCCCTGGCCATGT	0.537													113	303					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43898243	43898243	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43898243C>T	uc001cjk.1	+	23	3263	c.2801C>T	c.(2800-2802)CCC>CTC	p.P934L		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1833						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GAGGGTGTCCCCCTCATCAGC	0.607													60	130					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43909390	43909390	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:43909390C>T	uc001cjk.1	+	47	6513	c.6051C>T	c.(6049-6051)TTC>TTT	p.F2017F	KIAA0467_uc001cjl.1_5'Flank	NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2916						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCTTGGCTTTCCTGCAGCAAT	0.622													57	160					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44019227	44019227	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44019227C>T	uc001cjr.2	+	4	496	c.156C>T	c.(154-156)TTC>TTT	p.F52F	PTPRF_uc001cjq.3_Silent_p.F52F|PTPRF_uc001cjs.2_Silent_p.F52F|PTPRF_uc001cjt.3_Silent_p.F52F	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	52	Extracellular (Potential).|Ig-like C2-type 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TAGCCTCCTTCGTGTGCCAAG	0.562													98	240					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44044528	44044528	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44044528G>A	uc001cjr.2	+	7	956	c.616G>A	c.(616-618)GAG>AAG	p.E206K	PTPRF_uc001cjq.3_Missense_Mutation_p.E212K|PTPRF_uc001cjs.2_Missense_Mutation_p.E206K|PTPRF_uc001cjt.3_Missense_Mutation_p.E206K	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	206	Extracellular (Potential).|Ig-like C2-type 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity	p.R206H(1)		ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGGCAAGTACGAGTGTGTGGC	0.602													14	51					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44054630	44054630	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44054630C>T	uc001cjr.2	+	8	1248	c.908C>T	c.(907-909)TCG>TTG	p.S303L	PTPRF_uc001cjs.2_Missense_Mutation_p.S303L|PTPRF_uc001cju.2_5'Flank|PTPRF_uc009vwt.2_5'Flank|PTPRF_uc001cjv.2_5'Flank	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	303	Extracellular (Potential).|Ig-like C2-type 3.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GCCATCTCCTCGCTGGGCATG	0.597													8	25					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44069433	44069433	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44069433C>T	uc001cjr.2	+	16	2950	c.2610C>T	c.(2608-2610)TTC>TTT	p.F870F	PTPRF_uc001cjs.2_Silent_p.F861F|PTPRF_uc001cju.2_Intron|PTPRF_uc009vwt.2_Silent_p.F430F|PTPRF_uc001cjv.2_Silent_p.F330F|PTPRF_uc001cjw.2_Silent_p.F96F	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	870	Extracellular (Potential).|Fibronectin type-III 6.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CCATAGATTTCGGCAAGGATG	0.637													21	73					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44083474	44083474	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44083474C>T	uc001cjr.2	+	25	4603	c.4263C>T	c.(4261-4263)ATC>ATT	p.I1421I	PTPRF_uc001cjs.2_Silent_p.I1412I|PTPRF_uc001cju.2_Silent_p.I810I|PTPRF_uc009vwt.2_Silent_p.I981I|PTPRF_uc001cjv.2_Silent_p.I892I|PTPRF_uc001cjw.2_Silent_p.I647I	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1421	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).			I -> T (in Ref. 5; AAH48768).	transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ATGCCTACATCGCCACGCAGG	0.582													15	51					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44087626	44087626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44087626C>T	uc001cjr.2	+	34	6016	c.5676C>T	c.(5674-5676)TAC>TAT	p.Y1892Y	PTPRF_uc001cjs.2_Silent_p.Y1883Y|PTPRF_uc001cju.2_Silent_p.Y1281Y|PTPRF_uc009vwt.2_Silent_p.Y1452Y|PTPRF_uc001cjv.2_Silent_p.Y1363Y|PTPRF_uc001cjw.2_Silent_p.Y1118Y	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1892	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGCTGTGCTACCGTGCGGCCC	0.652													30	81					0	0	1	0	0
ST3GAL3	6487	broad.mit.edu	37	1	44364864	44364864	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44364864C>T	uc001ckc.2	+	8	663	c.486C>T	c.(484-486)ATC>ATT	p.I162I	ST3GAL3_uc010okj.1_RNA|ST3GAL3_uc001cjz.2_Silent_p.I177I|ST3GAL3_uc001cka.2_Intron|ST3GAL3_uc001ckb.2_Silent_p.I231I|ST3GAL3_uc001ckd.2_Silent_p.I216I|ST3GAL3_uc001cke.2_Silent_p.I146I|ST3GAL3_uc001ckf.2_Silent_p.I200I|ST3GAL3_uc001ckg.2_Silent_p.I162I|ST3GAL3_uc001ckh.2_Intron|ST3GAL3_uc001cki.2_Intron|ST3GAL3_uc009vwv.2_Silent_p.I162I|ST3GAL3_uc001ckj.2_RNA|ST3GAL3_uc009vww.2_RNA|ST3GAL3_uc001ckk.2_Silent_p.I131I|ST3GAL3_uc009vwy.2_Silent_p.I68I|ST3GAL3_uc009vwx.2_RNA|ST3GAL3_uc001ckm.2_Silent_p.I161I|ST3GAL3_uc001ckl.2_Silent_p.I162I|ST3GAL3_uc009vwz.2_Intron|ST3GAL3_uc001ckn.2_RNA|ST3GAL3_uc001ckp.2_Silent_p.I161I|ST3GAL3_uc001cko.2_Silent_p.I146I|ST3GAL3_uc009vxa.2_5'UTR|ST3GAL3_uc001ckq.2_Silent_p.I146I|ST3GAL3_uc001ckr.2_Silent_p.I115I|ST3GAL3_uc009vxb.2_Intron	NM_006279	NP_006270	Q11203	SIAT6_HUMAN	sialyltransferase 6 isoform j	162	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	N-acetyllactosaminide alpha-2,3-sialyltransferase activity			ovary(3)	3	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0518)				GCTGCATCATCGTGGGCAATG	0.592													24	75					0	0	1	0	0
IPO13	9670	broad.mit.edu	37	1	44415468	44415468	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44415468C>T	uc001ckx.2	+	2	1259	c.464C>T	c.(463-465)TCA>TTA	p.S155L		NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	155					protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				GCTGAGGACTCACCAGTGGAT	0.617													6	24					0	0	1	0	0
IPO13	9670	broad.mit.edu	37	1	44415559	44415559	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44415559C>T	uc001ckx.2	+	2	1350	c.555C>T	c.(553-555)TAC>TAT	p.Y185Y		NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	185	HEAT 1.				protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				TACCCCAGTACCGCAAAGGCC	0.647													6	16					0	0	1	0	0
IPO13	9670	broad.mit.edu	37	1	44432665	44432665	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44432665C>T	uc001ckx.2	+	18	3382	c.2587C>T	c.(2587-2589)CGT>TGT	p.R863C	IPO13_uc001cky.2_Missense_Mutation_p.R81C	NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	863					protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				GGAAGACGGTCGTATGCTGCT	0.612													24	59					0	0	1	0	0
IPO13	9670	broad.mit.edu	37	1	44433089	44433089	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44433089G>A	uc001ckx.2	+	19	3511	c.2716G>A	c.(2716-2718)GAG>AAG	p.E906K	IPO13_uc001cky.2_Missense_Mutation_p.E124K	NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	906					protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				GTGGATCAAGGAGGCCCTGCA	0.617													36	70					0	0	1	0	0
B4GALT2	8704	broad.mit.edu	37	1	44447081	44447081	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44447081C>T	uc001clg.2	+	2	619	c.249C>T	c.(247-249)CCC>CCT	p.P83P	B4GALT2_uc001clh.2_Missense_Mutation_p.P32L|B4GALT2_uc010okl.1_Silent_p.P112P|B4GALT2_uc001cli.2_Silent_p.P83P	NM_003780	NP_003771	O60909	B4GT2_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	83	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			N-Acetyl-D-glucosamine(DB00141)	CTGAGGTCCCCAGTGCCCTGC	0.627													12	34					0	0	1	0	0
CCDC24	149473	broad.mit.edu	37	1	44457929	44457929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44457929G>A	uc001clj.2	+	3	343	c.172G>A	c.(172-174)GCC>ACC	p.A58T	SLC6A9_uc009vxe.2_Intron|SLC6A9_uc010okm.1_Intron|CCDC24_uc001clk.2_Missense_Mutation_p.A14T|CCDC24_uc009vxc.2_Intron	NM_152499	NP_689712	Q8N4L8	CCD24_HUMAN	coiled-coil domain containing 24	58											0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				ATCCTCTCAAGCCCCCAGCTC	0.632													38	158					0	0	1	0	0
SLC6A9	6536	broad.mit.edu	37	1	44468071	44468071	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44468071G>A	uc001cll.2	-	8	1287	c.1095C>T	c.(1093-1095)GCC>GCT	p.A365A	SLC6A9_uc009vxe.2_Silent_p.A221A|SLC6A9_uc010okm.1_Silent_p.A292A|SLC6A9_uc001clm.2_Silent_p.A311A|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Silent_p.A296A|SLC6A9_uc001cln.2_Silent_p.A292A|SLC6A9_uc010oko.1_Silent_p.A181A|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	365	Helical; Name=6; (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	AGATCTGGGAGGCAGCATCAC	0.627													14	98					0	0	1	0	0
SLC6A9	6536	broad.mit.edu	37	1	44477310	44477310	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44477310G>A	uc001cll.2	-	2	364	c.172C>T	c.(172-174)CTC>TTC	p.L58F	SLC6A9_uc009vxe.2_Intron|SLC6A9_uc010okm.1_Intron|SLC6A9_uc001clm.2_Intron|SLC6A9_uc009vxd.2_Intron|SLC6A9_uc010okn.1_Intron|SLC6A9_uc001cln.2_Intron|SLC6A9_uc010oko.1_Intron|SLC6A9_uc010okp.1_Intron	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	58	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	CAGACTTTGAGGACAGACTCT	0.617													21	53					0	0	1	0	0
SLC6A9	6536	broad.mit.edu	37	1	44477369	44477369	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44477369G>A	uc001cll.2	-	2	305	c.113C>T	c.(112-114)TCC>TTC	p.S38F	SLC6A9_uc009vxe.2_Intron|SLC6A9_uc010okm.1_Intron|SLC6A9_uc001clm.2_Intron|SLC6A9_uc009vxd.2_Intron|SLC6A9_uc010okn.1_Intron|SLC6A9_uc001cln.2_Intron|SLC6A9_uc010oko.1_Intron|SLC6A9_uc010okp.1_Intron	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	38	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	CAGGAAGAAGGATCTCTGAAC	0.597													13	43					0	0	1	0	0
KLF17	128209	broad.mit.edu	37	1	44595299	44595299	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44595299C>T	uc001clp.2	+	2	414	c.356C>T	c.(355-357)CCC>CTC	p.P119L	KLF17_uc009vxf.1_Missense_Mutation_p.P82L	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	119					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					AGAATGTCTCCCCCTCAGCAA	0.552													36	129					0	0	1	0	0
KLF17	128209	broad.mit.edu	37	1	44595350	44595350	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44595350G>A	uc001clp.2	+	2	465	c.407G>A	c.(406-408)GGA>GAA	p.G136E	KLF17_uc009vxf.1_Missense_Mutation_p.G99E	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	136					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					ATGCCCGTAGGAGAGCCCAAT	0.542													36	58					0	0	1	0	0
KLF17	128209	broad.mit.edu	37	1	44596233	44596233	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44596233C>T	uc001clp.2	+	3	1033	c.975C>T	c.(973-975)TTC>TTT	p.F325F		NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	325	C2H2-type 2.				regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GGTCTTTCTTCCGTTCTGATG	0.463													38	85					0	0	1	0	0
KLF17	128209	broad.mit.edu	37	1	44596418	44596418	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44596418C>T	uc001clp.2	+	3	1218	c.1160C>T	c.(1159-1161)GCT>GTT	p.A387V		NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	387					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CCTCCTGCTGCTGGTCCTTAG	0.388													8	72					0	0	1	0	0
RNF220	55182	broad.mit.edu	37	1	44878220	44878220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:44878220C>T	uc001clv.1	+	2	811	c.451C>T	c.(451-453)CCC>TCC	p.P151S	RNF220_uc001clw.1_Missense_Mutation_p.P151S	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	151					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CACAGAGTCTCCCCACTTGCG	0.562													40	88					0	0	1	0	0
RNF220	55182	broad.mit.edu	37	1	45079881	45079881	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:45079881T>C	uc001clv.1	+	3	1030	c.670T>C	c.(670-672)TGC>CGC	p.C224R	RNF220_uc001clw.1_Missense_Mutation_p.C224R|RNF220_uc010okx.1_5'UTR|RNF220_uc010oky.1_5'UTR	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	224					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						GGCCCCAATTTGCCCCATCTG	0.587													33	94					0	0	1	0	0
BEST4	266675	broad.mit.edu	37	1	45250845	45250845	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:45250845C>T	uc001cmm.2	-	6	896	c.847G>A	c.(847-849)GAC>AAC	p.D283N		NM_153274	NP_695006	Q8NFU0	BEST4_HUMAN	bestrophin 4	283	Extracellular (Potential).					chloride channel complex|plasma membrane	chloride channel activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ATGTCCGGGTCTCCCAGGGCT	0.627													18	80					0	0	1	0	0
PTCH2	8643	broad.mit.edu	37	1	45292968	45292968	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:45292968G>A	uc010olf.1	-	16	2397	c.2385C>T	c.(2383-2385)GCC>GCT	p.A795A	PTCH2_uc010olg.1_Silent_p.A493A	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	795	Extracellular (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CCTGGTCAAAGGCAGCCTGGA	0.637									Basal_Cell_Nevus_syndrome				14	88					0	0	1	0	0
PTCH2	8643	broad.mit.edu	37	1	45295117	45295117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:45295117G>A	uc010olf.1	-	9	1184	c.1172C>T	c.(1171-1173)TCT>TTT	p.S391F	PTCH2_uc010olg.1_Missense_Mutation_p.S90F	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	391	Extracellular (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					ACTGACTTCAGAGAACGCATG	0.622									Basal_Cell_Nevus_syndrome				36	100					0	0	1	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45671756	45671756	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:45671756G>A	uc001cnd.2	-	1	495	c.267C>T	c.(265-267)ATC>ATT	p.I89I		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	89							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					CGGGCTCCGGGATCCGCTCGA	0.592													12	27					0	0	1	0	0
GPBP1L1	60313	broad.mit.edu	37	1	46106066	46106066	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46106066G>A	uc001coq.2	-	8	1921	c.560C>T	c.(559-561)CCT>CTT	p.P187L		NM_021639	NP_067652	Q9HC44	GPBL1_HUMAN	GC-rich promoter binding protein 1-like 1	187					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTTGGCACTAGGCGGGTTTTC	0.443													59	144					0	0	1	0	0
GPBP1L1	60313	broad.mit.edu	37	1	46120880	46120880	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46120880G>A	uc001coq.2	-	5	1533	c.172C>T	c.(172-174)CCC>TCC	p.P58S		NM_021639	NP_067652	Q9HC44	GPBL1_HUMAN	GC-rich promoter binding protein 1-like 1	58					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GTTCGTAGGGGACCATTGTTA	0.463													46	85					0	0	1	0	0
MAST2	23139	broad.mit.edu	37	1	46474037	46474037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46474037C>T	uc001cov.2	+	9	1255	c.972C>T	c.(970-972)TTC>TTT	p.F324F	MAST2_uc001cow.2_Silent_p.F324F|MAST2_uc001coy.1_Silent_p.F32F|MAST2_uc001coz.1_Silent_p.F209F|MAST2_uc009vya.2_Silent_p.F246F|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	324					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					AAGAAAGATTCCCAAAGGTAA	0.428													11	41					0	0	1	0	0
MAST2	23139	broad.mit.edu	37	1	46501502	46501502	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46501502C>T	uc001cov.2	+	29	5444	c.5161C>T	c.(5161-5163)CCC>TCC	p.P1721S	MAST2_uc001cow.2_Missense_Mutation_p.P1720S|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	1721					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					TTATGAGGATCCCAGCCAGGG	0.577													5	68					0	0	1	0	0
POMGNT1	55624	broad.mit.edu	37	1	46655138	46655138	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46655138G>A	uc001cpe.2	-	21	2051	c.1887C>T	c.(1885-1887)TCC>TCT	p.S629S	POMGNT1_uc010olx.1_Silent_p.S607S|POMGNT1_uc010oly.1_RNA|POMGNT1_uc010olz.1_Silent_p.S486S|POMGNT1_uc001cpg.2_Intron|POMGNT1_uc001cpf.2_Silent_p.S296S	NM_017739	NP_060209	Q8WZA1	PMGT1_HUMAN	O-linked mannose	629	Lumenal (Potential).				protein N-linked glycosylation|protein O-linked glycosylation	Golgi membrane|integral to membrane|microsome	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ACGAGTAGGGGGAAGCCGGGA	0.527													10	19					0	0	1	0	0
POMGNT1	55624	broad.mit.edu	37	1	46659974	46659974	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46659974G>A	uc001cpe.2	-	9	1015	c.851C>T	c.(850-852)CCC>CTC	p.P284L	POMGNT1_uc010olx.1_Missense_Mutation_p.P262L|POMGNT1_uc010oly.1_RNA|POMGNT1_uc010olz.1_Missense_Mutation_p.P141L|POMGNT1_uc001cpg.2_Missense_Mutation_p.P284L|POMGNT1_uc001cpf.2_5'UTR|POMGNT1_uc001cph.1_5'Flank|POMGNT1_uc001cpi.1_5'Flank	NM_017739	NP_060209	Q8WZA1	PMGT1_HUMAN	O-linked mannose	284	Lumenal (Potential).				protein N-linked glycosylation|protein O-linked glycosylation	Golgi membrane|integral to membrane|microsome	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GATGGGTGTGGGGTCCTTGCA	0.602													21	60					0	0	1	0	0
RAD54L	8438	broad.mit.edu	37	1	46733199	46733199	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46733199G>A	uc009vye.2	+	10	1074	c.960G>A	c.(958-960)CGG>CGA	p.R320R	RAD54L_uc001cpl.2_Silent_p.R320R|RAD54L_uc001cpm.1_Silent_p.R140R	NM_001142548	NP_001136020	Q92698	RAD54_HUMAN	RAD54-like protein	320	Helicase ATP-binding.				meiosis	nucleus	ATP binding|DNA binding|helicase activity			ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(166;0.155)	Breast(1374;0.0634)		KIRC - Kidney renal clear cell carcinoma(1967;0.000896)		CCAGCCGGCGGGTGCTCATCT	0.483								Direct_reversal_of_damage|Homologous_recombination					35	64					0	0	1	0	0
RAD54L	8438	broad.mit.edu	37	1	46733247	46733247	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46733247C>T	uc009vye.2	+	10	1122	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	RAD54L_uc001cpl.2_Silent_p.F336F|RAD54L_uc001cpm.1_Silent_p.F156F	NM_001142548	NP_001136020	Q92698	RAD54_HUMAN	RAD54-like protein	336	Helicase ATP-binding.				meiosis	nucleus	ATP binding|DNA binding|helicase activity			ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(166;0.155)	Breast(1374;0.0634)		KIRC - Kidney renal clear cell carcinoma(1967;0.000896)		TTGAGTATTTCAGCTTGGTAC	0.493								Direct_reversal_of_damage|Homologous_recombination					31	49					0	0	1	0	0
NSUN4	387338	broad.mit.edu	37	1	46810805	46810805	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46810805C>T	uc001cpr.1	+	2	535	c.426C>T	c.(424-426)TTC>TTT	p.F142F	NSUN4_uc010omc.1_Silent_p.F93F|NSUN4_uc009vyf.1_Missense_Mutation_p.S43F|NSUN4_uc009vyg.1_Silent_p.F93F|NSUN4_uc001cpt.1_RNA|NSUN4_uc001cps.1_Intron	NM_199044	NP_950245	Q96CB9	NSUN4_HUMAN	NOL1/NOP2/Sun domain family 4 protein	142							methyltransferase activity				0	Acute lymphoblastic leukemia(166;0.155)					TCAGTCGCTTCCCTCCTGCCA	0.562													23	48					0	0	1	0	0
FAAH	2166	broad.mit.edu	37	1	46871292	46871292	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46871292C>T	uc001cpu.2	+	5	693	c.611C>T	c.(610-612)ACC>ATC	p.T204I	FAAH_uc001cpv.2_RNA	NM_001441	NP_001432	O00519	FAAH1_HUMAN	fatty acid amide hydrolase	204	Cytoplasmic (By similarity).				fatty acid catabolic process	cytoplasm|cytoskeleton|endomembrane system|integral to membrane|organelle membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|fatty acid amide hydrolase activity			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(166;0.155)				Propofol(DB00818)|Thiopental(DB00599)	TTTGGCCAGACCGTGAACCCA	0.662													46	171					0	0	1	0	0
DMBX1	127343	broad.mit.edu	37	1	46978120	46978120	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:46978120C>T	uc001cpx.2	+	4	1118	c.1103C>T	c.(1102-1104)GCC>GTC	p.A368V	DMBX1_uc001cpw.2_Missense_Mutation_p.A363V	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	368	OAR.				brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CGGCTCCGGGCCAAGCAGCAC	0.637													12	119					0	0	1	0	0
MKNK1	8569	broad.mit.edu	37	1	47024335	47024335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47024335G>A	uc001cqb.2	-	14	1554	c.1310C>T	c.(1309-1311)TCC>TTC	p.S437F	MKNK1_uc010omd.1_Missense_Mutation_p.S301F|MKNK1_uc001cqc.2_Missense_Mutation_p.S396F|MKNK1_uc009vyi.2_3'UTR|MKNK1_uc010ome.1_3'UTR	NM_003684	NP_003675	Q9BUB5	MKNK1_HUMAN	MAP kinase-interacting serine/threonine kinase 1	437					intracellular protein kinase cascade|peptidyl-serine phosphorylation|regulation of translation	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2	Acute lymphoblastic leukemia(166;0.155)					GCAGGGAGGGGAAAGCTTCAT	0.627													22	36					0	0	1	0	0
MKNK1	8569	broad.mit.edu	37	1	47042299	47042299	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47042299G>A	uc001cqb.2	-	5	506	c.262C>T	c.(262-264)CGG>TGG	p.R88W	MKNK1_uc010omd.1_Silent_p.V17V|MKNK1_uc001cqc.2_Missense_Mutation_p.R88W|MKNK1_uc009vyi.2_Missense_Mutation_p.R88W|MKNK1_uc010ome.1_Silent_p.V17V|MKNK1_uc009vyj.2_Missense_Mutation_p.R33W|MKNK1_uc001cqd.2_Missense_Mutation_p.R76W|MKNK1_uc010omf.1_Missense_Mutation_p.R88W	NM_003684	NP_003675	Q9BUB5	MKNK1_HUMAN	MAP kinase-interacting serine/threonine kinase 1	88	Protein kinase.				intracellular protein kinase cascade|peptidyl-serine phosphorylation|regulation of translation	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2	Acute lymphoblastic leukemia(166;0.155)					ACCCTACTCCGACTGTGCCCT	0.522													36	103					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47264840	47264840	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47264840C>T	uc001cqm.3	+	1	171	c.87C>T	c.(85-87)CTC>CTT	p.L29L	CYP4B1_uc009vyl.1_5'UTR|CYP4B1_uc001cqn.3_Silent_p.L29L|CYP4B1_uc009vym.2_Silent_p.L29L|CYP4B1_uc010omk.1_5'UTR	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	29					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					TTCTCAAGCTCATCCACCTGC	0.577													8	18					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47278192	47278193	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47278192_47278193GG>AA	uc001cqm.3	+	4	476_477	c.392_393GG>AA	c.(391-393)GGG>GAA	p.G131E	CYP4B1_uc009vyl.1_5'UTR|CYP4B1_uc001cqn.3_Missense_Mutation_p.G131E|CYP4B1_uc009vym.2_Missense_Mutation_p.G116E|CYP4B1_uc010omk.1_5'UTR|CYP4B1_uc010oml.1_5'UTR	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	131					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GTTCTTGAGGGGCCCAAGTGGT	0.589													11	25					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47279210	47279210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47279210G>A	uc001cqm.3	+	5	636	c.552G>A	c.(550-552)GTG>GTA	p.V184V	CYP4B1_uc009vyl.1_Silent_p.V21V|CYP4B1_uc001cqn.3_Silent_p.V184V|CYP4B1_uc009vym.2_Silent_p.V169V|CYP4B1_uc010omk.1_Silent_p.V21V|CYP4B1_uc010oml.1_Silent_p.V21V	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	184					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					TCTGCGATGTGGGTCACATGG	0.582													19	67					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47280923	47280923	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47280923G>A	uc001cqm.3	+	8	1141	c.1057G>A	c.(1057-1059)GAC>AAC	p.D353N	CYP4B1_uc009vyl.1_Missense_Mutation_p.D190N|CYP4B1_uc001cqn.3_Missense_Mutation_p.D354N|CYP4B1_uc009vym.2_Missense_Mutation_p.D339N|CYP4B1_uc010omk.1_Missense_Mutation_p.D190N	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	353					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					AGGGGACCAGGACTTCTTCCA	0.582													13	27					0	0	1	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47325407	47325407	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47325407G>A	uc001cqo.1	-	9		c.1161C>T				NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						GCGTAGAGGCGGAGGCATTCC	0.493													20	87					0	0	1	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47364527	47364527	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47364527G>A	uc001cqo.1	-	2		c.348C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						TGTCTTTTCAGGAGAATCTTG	0.478													39	70					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47400029	47400029	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47400029C>T	uc001cqp.3	-	8	958	c.907G>A	c.(907-909)GGG>AGG	p.G303R	CYP4A11_uc001cqq.2_Missense_Mutation_p.G303R|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	303					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	AAGATGCTCCCATTCTCCATC	0.532													19	24					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47400205	47400205	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47400205G>A	uc001cqp.3	-	7	868	c.817C>T	c.(817-819)CAA>TAA	p.Q273*	CYP4A11_uc001cqq.2_Nonsense_Mutation_p.Q273*|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	273					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TTCTGTAGTTGAGCCTTCCTC	0.532													31	93					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47400212	47400212	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47400212C>T	uc001cqp.3	-	7	861	c.810G>A	c.(808-810)AGG>AGA	p.R270R	CYP4A11_uc001cqq.2_Silent_p.R270R|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	270					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GTTGAGCCTTCCTCAGTTGGA	0.532													29	89					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47401236	47401236	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47401236C>T	uc001cqp.3	-	5	645	c.594G>A	c.(592-594)ATG>ATA	p.M198I	CYP4A11_uc001cqq.2_Missense_Mutation_p.M198I|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	198					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	AGGCACACTTCATGATGGTGT	0.572													28	89					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47401263	47401263	+	Silent	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47401263G>C	uc001cqp.3	-	5	618	c.567C>G	c.(565-567)GTC>GTG	p.V189V	CYP4A11_uc001cqq.2_Silent_p.V189V|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	189					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TCATCAAGGAGACGTGCTGAA	0.567													14	67					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47401285	47401285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47401285G>A	uc001cqp.3	-	5	596	c.545C>T	c.(544-546)CCT>CTT	p.P182L	CYP4A11_uc001cqq.2_Missense_Mutation_p.P182L|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	182					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GACCTCCAGAGGGGAATCCTG	0.542													12	59					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47403730	47403730	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47403730C>T	uc001cqp.3	-	2	326	c.275G>A	c.(274-276)GGA>GAA	p.G92E	CYP4A11_uc001cqq.2_Missense_Mutation_p.G92E|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	92					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	AACTTTGCCTCCCCATAGCCA	0.512													34	107					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47403772	47403772	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47403772C>T	uc001cqp.3	-	2	284	c.233G>A	c.(232-234)TGG>TAG	p.W78*	CYP4A11_uc001cqq.2_Nonsense_Mutation_p.W78*|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	78					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TGTCTCCACCCATTTCTGAAT	0.483													32	94					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47489498	47489498	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47489498C>T	uc001cqt.2	+	1	259	c.9C>T	c.(7-9)TTC>TTT	p.F3F	CYP4X1_uc001cqr.2_Intron|CYP4X1_uc001cqs.2_Intron	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	3						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CCATGGAATTCTCCTGGCTGG	0.697													16	68					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47514238	47514238	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47514238G>A	uc001cqt.2	+	10	1459	c.1209G>A	c.(1207-1209)GGG>GGA	p.G403G	CYP4X1_uc001cqr.2_Silent_p.G402G|CYP4X1_uc001cqs.2_Silent_p.G338G	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	403						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CTTTCTTAGGGATCACCGTGG	0.428													73	267					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47514289	47514289	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47514289G>A	uc001cqt.2	+	10	1510	c.1260G>A	c.(1258-1260)TGG>TGA	p.W420*	CYP4X1_uc001cqr.2_Nonsense_Mutation_p.W419*|CYP4X1_uc001cqs.2_Nonsense_Mutation_p.W355*	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	420						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CTGCTGTCTGGAAAAACCCAA	0.418													63	171					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515712	47515712	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47515712G>A	uc001cqt.2	+	12	1646	c.1396G>A	c.(1396-1398)GTA>ATA	p.V466I	CYP4X1_uc001cqr.2_Missense_Mutation_p.V465I|CYP4X1_uc001cqs.2_Missense_Mutation_p.V401I	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	466						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						TGAGTTAAAGGTAACCATTGC	0.438													55	120					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515777	47515777	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47515777C>T	uc001cqt.2	+	12	1711	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F	CYP4X1_uc001cqr.2_Silent_p.F486F|CYP4X1_uc001cqs.2_Silent_p.F422F	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	487						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CTCTTACTTTCCCCAACCATT	0.448													43	127					0	0	1	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47560332	47560332	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47560332G>A	uc001cqu.1	+	7	870	c.867G>A	c.(865-867)TTG>TTA	p.L289L		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	289	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						ACATACTTTTGAGTGCCAAAG	0.294													17	51					0	0	1	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47571890	47571890	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47571890C>T	uc001cqu.1	+	9	1161	c.1158C>T	c.(1156-1158)CTC>CTT	p.L386L		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	386	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						CCCGGTTACTCGACAAACCCA	0.463													10	126					0	0	1	0	0
CYP4A22	284541	broad.mit.edu	37	1	47607787	47607787	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47607787C>T	uc001cqv.1	+	4	441	c.390C>T	c.(388-390)GGC>GGT	p.G130G	CYP4A22_uc009vyo.2_Silent_p.G130G|CYP4A22_uc009vyp.2_Silent_p.G130G	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	130						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						TAGGGTACGGCTTGCTCCTGT	0.537													30	40					0	0	1	0	0
CYP4A22	284541	broad.mit.edu	37	1	47608979	47608979	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47608979G>A	uc001cqv.1	+	5	600	c.549G>A	c.(547-549)CTG>CTA	p.L183L	CYP4A22_uc009vyo.2_Silent_p.L183L|CYP4A22_uc009vyp.2_Silent_p.L183L	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	183						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						ATTCCCCTCTGGAGGTCTTTC	0.547													25	63					0	0	1	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610048	47610048	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47610048G>A	uc001cqv.1	+	7	861	c.810G>A	c.(808-810)AGG>AGA	p.R270R	CYP4A22_uc009vyo.2_Silent_p.R270R|CYP4A22_uc009vyp.2_Missense_Mutation_p.E219K	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	270						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						TCCAACTGAGGAAGGCTCAAC	0.542													23	118					0	0	1	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610124	47610124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47610124C>T	uc001cqv.1	+	7	937	c.886C>T	c.(886-888)CTC>TTC	p.L296F	CYP4A22_uc009vyo.2_Missense_Mutation_p.L296F|CYP4A22_uc009vyp.2_Missense_Mutation_p.P244L	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	296						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GGACATCCTCCTCTTGGCCAA	0.507													35	103					0	0	1	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610225	47610225	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47610225G>A	uc001cqv.1	+	8	952	c.901G>A	c.(901-903)GAG>AAG	p.E301K	CYP4A22_uc009vyo.2_Missense_Mutation_p.E301K|CYP4A22_uc009vyp.2_Intron	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	301						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						TTCCCAGATGGAGAATGGGAG	0.537													31	154					0	0	1	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610231	47610231	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47610231G>A	uc001cqv.1	+	8	958	c.907G>A	c.(907-909)GGG>AGG	p.G303R	CYP4A22_uc009vyo.2_Missense_Mutation_p.G303R|CYP4A22_uc009vyp.2_Intron	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	303						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GATGGAGAATGGGAGCATCTT	0.537													23	156					0	0	1	0	0
PDZK1IP1	10158	broad.mit.edu	37	1	47650692	47650692	+	Missense_Mutation	SNP	G	A	A	rs150391778		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47650692G>A	uc001cqw.2	-	3	421	c.254C>T	c.(253-255)TCG>TTG	p.S85L		NM_005764	NP_005755	Q13113	PDZ1I_HUMAN	PDZK1 interacting protein 1	85						integral to membrane					0						GGCCGCCATCGAAGAGTACCT	0.602													22	57					0	0	1	0	0
PDZK1IP1	10158	broad.mit.edu	37	1	47653014	47653014	+	Silent	SNP	G	A	A	rs17850898		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47653014G>A	uc001cqw.2	-	2	320	c.153C>T	c.(151-153)AAC>AAT	p.N51N		NM_005764	NP_005755	Q13113	PDZ1I_HUMAN	PDZK1 interacting protein 1	51				N -> K (in Ref. 5; AAH12303).		integral to membrane					0						ACCAGAAGTGGTTGACTGCAA	0.597													14	38					0	0	1	0	0
TAL1	6886	broad.mit.edu	37	1	47685725	47685725	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47685725C>T	uc001cqx.2	-	4	1240	c.663G>A	c.(661-663)AAG>AAA	p.K221K	TAL1_uc009vyq.2_5'UTR|TAL1_uc001cqy.2_Silent_p.K221K	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	221	Helix-loop-helix motif.				basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						TGCTGAGCTTCTTGTCCGGGG	0.597			T	TRD@|SIL	lymphoblastic leukemia/biphasic								13	68					0	0	1	0	0
TAL1	6886	broad.mit.edu	37	1	47685771	47685771	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47685771G>A	uc001cqx.2	-	4	1194	c.617C>T	c.(616-618)GCC>GTC	p.A206V	TAL1_uc009vyq.2_5'UTR|TAL1_uc001cqy.2_Missense_Mutation_p.A206V	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	206	Helix-loop-helix motif.				basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						CTCGGCAAAGGCCCCGTTCAC	0.557			T	TRD@|SIL	lymphoblastic leukemia/biphasic								19	51					0	0	1	0	0
STIL	6491	broad.mit.edu	37	1	47717316	47717316	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47717316G>A	uc001crc.1	-	17	3511	c.3356C>T	c.(3355-3357)ACC>ATC	p.T1119I	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.T1073I|STIL_uc010omo.1_Missense_Mutation_p.T1102I|STIL_uc001crd.1_Missense_Mutation_p.T1120I|STIL_uc001cre.1_Missense_Mutation_p.T1119I	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	1119					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				ATATTTTTTGGTTGCAAATGA	0.373													71	169					0	0	1	0	0
STIL	6491	broad.mit.edu	37	1	47767944	47767944	+	Missense_Mutation	SNP	G	A	A	rs147160336	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:47767944G>A	uc001crc.1	-	4	382	c.227C>T	c.(226-228)TCG>TTG	p.S76L	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.S76L|STIL_uc010omo.1_Missense_Mutation_p.S76L|STIL_uc001crd.1_Missense_Mutation_p.S76L|STIL_uc001cre.1_Missense_Mutation_p.S76L|STIL_uc001crg.1_Missense_Mutation_p.S76L	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	76					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				AAAGCATGACGAATTTTTTTT	0.303													21	66					0	0	1	0	0
SLC5A9	200010	broad.mit.edu	37	1	48695053	48695053	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:48695053G>A	uc001cro.2	+	4	478	c.426G>A	c.(424-426)AAG>AAA	p.K142K	SLC5A9_uc010oms.1_RNA|SLC5A9_uc001crn.2_Silent_p.K167K|SLC5A9_uc010omt.1_Silent_p.K156K|SLC5A9_uc001crp.2_5'UTR|SLC5A9_uc010omu.1_5'UTR	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	142	Cytoplasmic (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						AGTATCTGAAGAAGCGATTTG	0.562													10	81					0	0	1	0	0
SLC5A9	200010	broad.mit.edu	37	1	48699373	48699373	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:48699373G>A	uc001cro.2	+	9	1132	c.1080G>A	c.(1078-1080)GGG>GGA	p.G360G	SLC5A9_uc010oms.1_RNA|SLC5A9_uc001crn.2_Silent_p.G385G|SLC5A9_uc010omt.1_Silent_p.G374G|SLC5A9_uc001crp.2_Silent_p.G27G|SLC5A9_uc010omu.1_Silent_p.G27G	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	360	Extracellular (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						GAATCTGTGGGGCCCGAGTGG	0.562													6	31					0	0	1	0	0
SLC5A9	200010	broad.mit.edu	37	1	48713025	48713025	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:48713025G>A	uc001cro.2	+	14	1908	c.1856G>A	c.(1855-1857)GGA>GAA	p.G619E	SLC5A9_uc001crn.2_Missense_Mutation_p.G644E|SLC5A9_uc010omt.1_Missense_Mutation_p.G633E|SLC5A9_uc001crp.2_Missense_Mutation_p.G286E|SLC5A9_uc010omu.1_Missense_Mutation_p.G286E|SLC5A9_uc009vyt.1_RNA	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	619	Cytoplasmic (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						AGGTCCTGGGGAAAGTTGCTC	0.403													9	26					0	0	1	0	0
SLC5A9	200010	broad.mit.edu	37	1	48713043	48713043	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:48713043G>A	uc001cro.2	+	14	1926	c.1874G>A	c.(1873-1875)TGG>TAG	p.W625*	SLC5A9_uc001crn.2_Nonsense_Mutation_p.W650*|SLC5A9_uc010omt.1_Nonsense_Mutation_p.W639*|SLC5A9_uc001crp.2_Nonsense_Mutation_p.W292*|SLC5A9_uc010omu.1_Nonsense_Mutation_p.W292*|SLC5A9_uc009vyt.1_RNA	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	625	Cytoplasmic (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						CTCTGGAGCTGGTTCTGTGGG	0.463													14	29					0	0	1	0	0
AGBL4	84871	broad.mit.edu	37	1	49052746	49052746	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:49052746G>A	uc001cru.2	-	11	1355	c.1197C>T	c.(1195-1197)ACC>ACT	p.T399T	AGBL4_uc010omw.1_Silent_p.T132T|AGBL4_uc010omx.1_Silent_p.T411T|AGBL4_uc001crv.1_Silent_p.T252T|AGBL4_uc010omy.1_Silent_p.T222T	NM_032785	NP_116174	Q5VU57	CBPC6_HUMAN	ATP/GTP binding protein-like 4	399					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2				Colorectal(2;0.00349)|COAD - Colon adenocarcinoma(2;0.0037)		AGACCTCTAGGGTGTAGCAAT	0.562													4	2					0	0	1	0	0
BEND5	79656	broad.mit.edu	37	1	49202013	49202013	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:49202013C>T	uc001crx.3	-	5	1050	c.1006G>A	c.(1006-1008)GAT>AAT	p.D336N	AGBL4_uc001cru.2_Intron|AGBL4_uc010omw.1_Intron|AGBL4_uc010omx.1_Intron|AGBL4_uc001crv.1_Intron|AGBL4_uc010omy.1_Intron|BEND5_uc001crw.3_Missense_Mutation_p.D167N	NM_024603	NP_078879	Q7L4P6	BEND5_HUMAN	BEN domain containing 5	336	BEN.									skin(1)	1						TTCAGAACATCTGTTCCCCAA	0.468													41	133					0	0	1	0	0
ELAVL4	1996	broad.mit.edu	37	1	50610686	50610686	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:50610686G>A	uc001csb.2	+	2	335	c.67G>A	c.(67-69)GGA>AGA	p.G23R	ELAVL4_uc001cry.3_Missense_Mutation_p.G26R|ELAVL4_uc001crz.3_Missense_Mutation_p.G23R|ELAVL4_uc001csa.3_Missense_Mutation_p.G40R|ELAVL4_uc001csc.3_Missense_Mutation_p.G23R|ELAVL4_uc009vyu.2_Missense_Mutation_p.G28R|ELAVL4_uc010omz.1_Missense_Mutation_p.G28R	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	23					mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						TACAAGCAATGGACCCTCCAG	0.418													7	54					0	0	1	0	0
ELAVL4	1996	broad.mit.edu	37	1	50610836	50610836	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:50610836G>A	uc001csb.2	+	2	485	c.217G>A	c.(217-219)GAA>AAA	p.E73K	ELAVL4_uc001cry.3_Missense_Mutation_p.E76K|ELAVL4_uc001crz.3_Missense_Mutation_p.E73K|ELAVL4_uc001csa.3_Missense_Mutation_p.E90K|ELAVL4_uc001csc.3_Missense_Mutation_p.E73K|ELAVL4_uc009vyu.2_Missense_Mutation_p.E78K|ELAVL4_uc010omz.1_Missense_Mutation_p.E78K	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	73	RRM 1.				mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						TGGTGAAATAGAATCCTGCAA	0.413													23	96					0	0	1	0	0
ELAVL4	1996	broad.mit.edu	37	1	50661436	50661436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:50661436C>T	uc001csb.2	+	5	980	c.712C>T	c.(712-714)CAC>TAC	p.H238Y	ELAVL4_uc001cry.3_Missense_Mutation_p.H241Y|ELAVL4_uc001crz.3_Missense_Mutation_p.H238Y|ELAVL4_uc001csa.3_Missense_Mutation_p.H255Y|ELAVL4_uc001csc.3_Missense_Mutation_p.H238Y|ELAVL4_uc009vyu.2_Missense_Mutation_p.H243Y|ELAVL4_uc010omz.1_Missense_Mutation_p.H243Y	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	238					mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						AGGTCCACTTCACCACCAGGC	0.597													29	83					0	0	1	0	0
ELAVL4	1996	broad.mit.edu	37	1	50666517	50666517	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:50666517C>T	uc001csb.2	+	7	1078	c.810C>T	c.(808-810)CCC>CCT	p.P270P	ELAVL4_uc001cry.3_Intron|ELAVL4_uc001crz.3_Intron|ELAVL4_uc001csa.3_Intron|ELAVL4_uc001csc.3_Intron|ELAVL4_uc010omz.1_Intron	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	270					mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						CTGCTTGTCCCCCCAGGTTCT	0.522													45	196					0	0	1	0	0
ELAVL4	1996	broad.mit.edu	37	1	50666819	50666819	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:50666819C>T	uc001csb.2	+	7	1380	c.1112C>T	c.(1111-1113)TCC>TTC	p.S371F	ELAVL4_uc001cry.3_Missense_Mutation_p.S360F|ELAVL4_uc001crz.3_Missense_Mutation_p.S357F|ELAVL4_uc001csa.3_Missense_Mutation_p.S374F|ELAVL4_uc001csc.3_Missense_Mutation_p.S357F|ELAVL4_uc010omz.1_Missense_Mutation_p.S362F	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	371	RRM 3.				mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						TTGCAAGTTTCCTTTAAAACC	0.458													20	62					0	0	1	0	0
TTC39A	22996	broad.mit.edu	37	1	51770760	51770760	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:51770760C>T	uc001csl.2	-	8	860	c.755G>A	c.(754-756)GGA>GAA	p.G252E	TTC39A_uc001csk.2_Missense_Mutation_p.G217E|TTC39A_uc010ond.1_Missense_Mutation_p.G189E|TTC39A_uc010one.1_Missense_Mutation_p.G216E|TTC39A_uc010onf.1_Missense_Mutation_p.G220E|TTC39A_uc001csn.2_Missense_Mutation_p.G251E|TTC39A_uc001cso.1_Missense_Mutation_p.G248E|TTC39A_uc009vyy.1_Missense_Mutation_p.G189E	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	252							binding			skin(1)	1						TACCTTGTTTCCTGAAAACCC	0.547													20	48					0	0	1	0	0
TTC39A	22996	broad.mit.edu	37	1	51771684	51771684	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:51771684C>T	uc001csl.2	-	7	766	c.661G>A	c.(661-663)GGA>AGA	p.G221R	TTC39A_uc001csk.2_Missense_Mutation_p.G186R|TTC39A_uc010ond.1_Missense_Mutation_p.G158R|TTC39A_uc010one.1_Missense_Mutation_p.G185R|TTC39A_uc010onf.1_Missense_Mutation_p.G189R|TTC39A_uc001csn.2_Missense_Mutation_p.G220R|TTC39A_uc001cso.1_Missense_Mutation_p.G217R|TTC39A_uc009vyy.1_Missense_Mutation_p.G158R	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	221							binding			skin(1)	1						TTCACTCCTCCTTCAAAGTGC	0.562													34	78					0	0	1	0	0
NRD1	4898	broad.mit.edu	37	1	52264053	52264053	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:52264053G>A	uc001ctc.3	-	24	2998	c.2676C>T	c.(2674-2676)GCC>GCT	p.A892A	NRD1_uc009vzb.2_Silent_p.A587A|NRD1_uc001ctd.3_Silent_p.A824A|NRD1_uc001cte.2_Silent_p.A760A|NRD1_uc001ctf.2_Silent_p.A824A|NRD1_uc010ong.1_RNA	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	823					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						TAGACCAACGGGCATATTCCA	0.403													28	65					0	0	1	0	0
NRD1	4898	broad.mit.edu	37	1	52269605	52269605	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:52269605G>A	uc001ctc.3	-	22	2720	c.2398C>T	c.(2398-2400)CTT>TTT	p.L800F	NRD1_uc009vzb.2_Missense_Mutation_p.L495F|NRD1_uc001ctd.3_Missense_Mutation_p.L732F|NRD1_uc001cte.2_Missense_Mutation_p.L668F|NRD1_uc001ctf.2_Missense_Mutation_p.L732F|NRD1_uc010ong.1_RNA	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	731					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						TTATGCGTAAGGATATTGACA	0.383													5	47					0	0	1	0	0
RAB3B	5865	broad.mit.edu	37	1	52442595	52442595	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:52442595G>A	uc001cth.2	-	2	320	c.195C>T	c.(193-195)TAC>TAT	p.Y65Y		NM_002867	NP_002858	P20337	RAB3B_HUMAN	RAB3B, member RAS oncogene family	65					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			ovary(1)	1						TCTCGTGACGGTAGACTGTCT	0.562													26	59					0	0	1	0	0
ZFYVE9	9372	broad.mit.edu	37	1	52704941	52704941	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:52704941C>T	uc001cto.2	+	4	2024	c.1852C>T	c.(1852-1854)CTT>TTT	p.L618F	ZFYVE9_uc001ctn.2_Missense_Mutation_p.L618F|ZFYVE9_uc001ctp.2_Missense_Mutation_p.L618F	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	618					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						AAATGATATTCTTGGGAAAGC	0.328													12	117					0	0	1	0	0
ZFYVE9	9372	broad.mit.edu	37	1	52732463	52732463	+	Silent	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:52732463G>C	uc001cto.2	+	6	2587	c.2415G>C	c.(2413-2415)GTG>GTC	p.V805V	ZFYVE9_uc001ctp.2_Intron	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	805	SBD.			V->E: Diminishes complex formation with SMAD2.|V->A: Diminishes complex formation with SMAD2.	endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						CTCCCACTGTGATGGTACCTG	0.507													24	57					0	0	1	0	0
FAM159A	348378	broad.mit.edu	37	1	53122628	53122628	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53122628G>A	uc001cuf.2	+	3	589	c.489G>A	c.(487-489)ATG>ATA	p.M163I	FAM159A_uc001cug.1_Intron|FAM159A_uc001cuh.2_Intron	NM_001042693	NP_001036158	Q6UWV7	F159A_HUMAN	hypothetical protein LOC348378	163						integral to membrane					0						ATTGCTTCATGGCCACAGTGA	0.542													22	256					0	0	1	0	0
ZYG11B	79699	broad.mit.edu	37	1	53236939	53236939	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53236939C>T	uc001cuj.2	+	3	639	c.444C>T	c.(442-444)CTC>CTT	p.L148L	ZYG11B_uc009vzg.2_RNA|ZYG11B_uc010onj.1_Silent_p.L139L	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	148							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						CATTAACTCTCTCCCTCGAGG	0.473													10	78					0	0	1	0	0
SCP2	6342	broad.mit.edu	37	1	53413730	53413730	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53413730G>A	uc001cur.1	+	3	298	c.177G>A	c.(175-177)CAG>CAA	p.Q59Q	SCP2_uc001cus.1_RNA|SCP2_uc010ono.1_5'UTR|SCP2_uc010onp.1_Intron|SCP2_uc009vzi.1_Silent_p.Q59Q|SCP2_uc001cuq.1_Silent_p.Q59Q	NM_002979	NP_002970	P22307	NLTP_HUMAN	sterol carrier protein 2 isoform 1 proprotein	59					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|lipid transport	mitochondrion|nucleus|peroxisomal matrix	propanoyl-CoA C-acyltransferase activity|propionyl-CoA C2-trimethyltridecanoyltransferase activity|protein binding|sterol binding			breast(1)	1						CAGTGGACCAGGCATGTGTTG	0.348													46	178					0	0	1	0	0
SCP2	6342	broad.mit.edu	37	1	53413751	53413751	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53413751T>C	uc001cur.1	+	3	319	c.198T>C	c.(196-198)TTT>TTC	p.F66F	SCP2_uc001cus.1_RNA|SCP2_uc010ono.1_5'UTR|SCP2_uc010onp.1_Intron|SCP2_uc009vzi.1_Silent_p.F66F|SCP2_uc001cuq.1_Silent_p.F66F	NM_002979	NP_002970	P22307	NLTP_HUMAN	sterol carrier protein 2 isoform 1 proprotein	66					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|lipid transport	mitochondrion|nucleus|peroxisomal matrix	propanoyl-CoA C-acyltransferase activity|propionyl-CoA C2-trimethyltridecanoyltransferase activity|protein binding|sterol binding			breast(1)	1						GCTATGTTTTTGGTATGTATT	0.353													37	139					0	0	1	0	0
PODN	127435	broad.mit.edu	37	1	53544406	53544406	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53544406G>A	uc001cuv.2	+	8	1375	c.1368G>A	c.(1366-1368)GAG>GAA	p.E456E	PODN_uc001cuw.2_Silent_p.E437E|PODN_uc010onr.1_Silent_p.E437E|PODN_uc010ons.1_Silent_p.E314E	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	408	LRR 14.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						TCCTGGAGGAGCTCAACCTCA	0.657													49	118					0	0	1	0	0
PODN	127435	broad.mit.edu	37	1	53544456	53544456	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53544456C>T	uc001cuv.2	+	8	1425	c.1418C>T	c.(1417-1419)GCC>GTC	p.A473V	PODN_uc001cuw.2_Missense_Mutation_p.A454V|PODN_uc010onr.1_Missense_Mutation_p.A454V|PODN_uc010ons.1_Missense_Mutation_p.A331V	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	425	LRR 14.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						CACCGCGACGCCTTCCGCAAG	0.637													38	81					0	0	1	0	0
PODN	127435	broad.mit.edu	37	1	53547816	53547816	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53547816G>A	uc001cuv.2	+	10	1976	c.1969G>A	c.(1969-1971)GAA>AAA	p.E657K	PODN_uc001cuw.2_Missense_Mutation_p.E638K|PODN_uc010onr.1_Missense_Mutation_p.E638K|PODN_uc010ons.1_Missense_Mutation_p.E515K	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	609	Glu-rich.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						ggaggaggaggaagaggaAAC	0.383													14	19					0	0	1	0	0
SLC1A7	6512	broad.mit.edu	37	1	53556411	53556411	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53556411G>A	uc001cuy.2	-	8	1267	c.1099C>T	c.(1099-1101)CGC>TGC	p.R367C	SLC1A7_uc001cux.2_5'UTR	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	367						integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	AGCACGAAGCGAGCGATGCGC	0.622													15	26					0	0	1	0	0
SLC1A7	6512	broad.mit.edu	37	1	53580495	53580495	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53580495C>T	uc001cuy.2	-	3	534	c.366G>A	c.(364-366)AAG>AAA	p.K122K	SLC1A7_uc001cuz.3_Silent_p.K122K|uc001cva.1_RNA	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	122	Extracellular (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	CCGTGGTCTCCTTCTGGGCCG	0.612													11	31					0	0	1	0	0
DMRTB1	63948	broad.mit.edu	37	1	53925647	53925647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53925647C>T	uc001cvq.1	+	1	576	c.521C>T	c.(520-522)CCC>CTC	p.P174L		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	174	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TACCCTGGCCCCCTAGACCTG	0.716													3	12					0	0	1	0	0
DMRTB1	63948	broad.mit.edu	37	1	53930377	53930378	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53930377_53930378CC>TT	uc001cvq.1	+	3	873_874	c.818_819CC>TT	c.(817-819)CCC>CTT	p.P273L		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	273	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						ccactgccgccCCTTCCACCGC	0.554													27	46					0	0	1	0	0
DMRTB1	63948	broad.mit.edu	37	1	53932330	53932330	+	Missense_Mutation	SNP	G	A	A	rs141793483	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53932330G>A	uc001cvq.1	+	4	1079	c.1024G>A	c.(1024-1026)GAC>AAC	p.D342N		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	342					sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						GGAGCAGTCCGACTAGGCCCC	0.567													96	199					0	0	1	0	0
GLIS1	148979	broad.mit.edu	37	1	53975609	53975609	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53975609C>T	uc001cvr.1	-	8	2017	c.1450G>A	c.(1450-1452)GGG>AGG	p.G484R		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	484	Pro-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GGCTGGCCCCCCGGAGAATGG	0.692													3	14					0	0	1	0	0
GLIS1	148979	broad.mit.edu	37	1	53986319	53986319	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:53986319C>T	uc001cvr.1	-	6	1756	c.1189G>A	c.(1189-1191)GAG>AAG	p.E397K		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	397					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GGGAGCAGCTCCTGGCCCAGG	0.677													6	21					0	0	1	0	0
GLIS1	148979	broad.mit.edu	37	1	54060071	54060071	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:54060071G>A	uc001cvr.1	-	3	1072	c.505C>T	c.(505-507)CCC>TCC	p.P169S		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	169					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGAGACAGGGGATAGGGGGGC	0.687													12	15					0	0	1	0	0
GLIS1	148979	broad.mit.edu	37	1	54060232	54060233	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:54060232_54060233CC>TT	uc001cvr.1	-	3	910_911	c.343_344GG>AA	c.(343-345)GGC>AAC	p.G115N		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	115					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTTGGAAGGGCCCCCCAGATCT	0.644													10	51					0	0	1	0	0
GLIS1	148979	broad.mit.edu	37	1	54060279	54060279	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:54060279G>A	uc001cvr.1	-	3	864	c.297C>T	c.(295-297)ACC>ACT	p.T99T		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	99					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						CATTTACACAGGTGACCAGAG	0.677													23	41					0	0	1	0	0
GLIS1	148979	broad.mit.edu	37	1	54060446	54060446	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:54060446C>T	uc001cvr.1	-	3	697	c.130G>A	c.(130-132)GAA>AAA	p.E44K		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	44					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GAGCTGGGTTCGCTGCCCAGA	0.726													3	16					0	0	1	0	0
GLIS1	148979	broad.mit.edu	37	1	54060477	54060477	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:54060477G>A	uc001cvr.1	-	3	666	c.99C>T	c.(97-99)ACC>ACT	p.T33T		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	33					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						AAGGCGCAGGGGTGGCGAGGC	0.721													3	21					0	0	1	0	0
TMEM48	55706	broad.mit.edu	37	1	54262797	54262797	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:54262797G>A	uc001cvs.2	-	12	1484	c.1243C>T	c.(1243-1245)CCA>TCA	p.P415S	TMEM48_uc010onu.1_Missense_Mutation_p.P375S|TMEM48_uc001cvt.2_Missense_Mutation_p.P292S|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_Missense_Mutation_p.P80S	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	415	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						CTAGATTTTGGTGTCTGAAAA	0.428													32	63					0	0	1	0	0
TMEM48	55706	broad.mit.edu	37	1	54272177	54272177	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:54272177G>A	uc001cvs.2	-	9	1146	c.905C>T	c.(904-906)CCT>CTT	p.P302L	TMEM48_uc010onu.1_Missense_Mutation_p.P262L|TMEM48_uc001cvt.2_Missense_Mutation_p.P179L|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_5'UTR	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	302	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TGGTTGAACAGGAAACACATG	0.348													21	72					0	0	1	0	0
CDCP2	200008	broad.mit.edu	37	1	54605263	54605263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:54605263C>T	uc001cwv.1	-	4	2128	c.1280G>A	c.(1279-1281)GGA>GAA	p.G427E		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	427						extracellular region				ovary(1)	1						TCTTAGGGGTCCCGAGAGTGG	0.582													16	31					0	0	1	0	0
CDCP2	200008	broad.mit.edu	37	1	54606840	54606840	+	Missense_Mutation	SNP	C	T	T	rs141787724		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:54606840C>T	uc001cwv.1	-	3	1542	c.694G>A	c.(694-696)GAA>AAA	p.E232K		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	232	CUB 2.					extracellular region				ovary(1)	1						ACCTGCAGTTCGTGGCCCAGA	0.592													18	61					0	0	1	0	0
ACOT11	26027	broad.mit.edu	37	1	55059688	55059688	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55059688C>T	uc001cxm.1	+	5	529	c.447C>T	c.(445-447)TTC>TTT	p.F149F	ACOT11_uc001cxj.1_Silent_p.F27F|ACOT11_uc001cxk.2_Silent_p.F115F|ACOT11_uc001cxl.1_Silent_p.F149F	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	149	Acyl coenzyme A hydrolase 1.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						TGGCCACCTTCGTGGCCCGCC	0.632													6	57					0	0	1	0	0
ACOT11	26027	broad.mit.edu	37	1	55069580	55069580	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55069580C>T	uc001cxm.1	+	11	1204	c.1122C>T	c.(1120-1122)CCC>CCT	p.P374P	ACOT11_uc001cxj.1_Silent_p.P252P|ACOT11_uc001cxl.1_Silent_p.P374P	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	374					fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						CAGAGGTGCCCCTCTCCGTCC	0.542													33	76					0	0	1	0	0
ACOT11	26027	broad.mit.edu	37	1	55070823	55070823	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55070823C>T	uc001cxm.1	+	13	1393	c.1311C>T	c.(1309-1311)GCC>GCT	p.A437A	ACOT11_uc001cxj.1_Silent_p.A315A|ACOT11_uc001cxl.1_Silent_p.A437A	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	437	START.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						TGGATGCAGCCCAGGCCTTCC	0.617													19	63					0	0	1	0	0
FAM151A	338094	broad.mit.edu	37	1	55077389	55077389	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55077389G>A	uc001cxn.2	-	6	962	c.830C>T	c.(829-831)TCG>TTG	p.S277L	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	277						integral to membrane					0						CATGGGGTCCGAGGCAGCCTG	0.592													29	98					0	0	1	0	0
FAM151A	338094	broad.mit.edu	37	1	55080462	55080462	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55080462C>T	uc001cxn.2	-	4	618	c.486G>A	c.(484-486)GAG>GAA	p.E162E	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	162						integral to membrane					0						CTTTGCCTTCCTCTGTCAGCT	0.557													15	49					0	0	1	0	0
FAM151A	338094	broad.mit.edu	37	1	55080480	55080480	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55080480G>A	uc001cxn.2	-	4	600	c.468C>T	c.(466-468)CTC>CTT	p.L156L	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	156						integral to membrane					0						GCTGCCGCAGGAGGTCCAGGG	0.552													14	52					0	0	1	0	0
FAM151A	338094	broad.mit.edu	37	1	55081805	55081805	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55081805C>T	uc001cxn.2	-	3	435	c.303G>A	c.(301-303)GGG>GGA	p.G101G	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	101						integral to membrane					0						CTGTGCCGAGCCCTTCTACAT	0.498													10	75					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55145099	55145099	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55145099G>A	uc010ooe.1	+	12	2537	c.2213G>A	c.(2212-2214)AGG>AAG	p.R738K	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.R306K|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.R256K|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.R738K|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	738						integral to membrane	binding				0						TACCGCCACAGGGCGCTGGAG	0.657													11	40					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55145563	55145563	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55145563G>A	uc010ooe.1	+	13	2551	c.2227_splice	c.e13-1	p.I743_splice	C1orf175_uc001cxq.2_Splice_Site|C1orf175_uc010ooc.1_Splice_Site_p.I311_splice|C1orf175_uc001cxs.2_Splice_Site|C1orf175_uc010ood.1_Splice_Site_p.I261_splice|C1orf175_uc010oof.1_Intron|C1orf175_uc001cxr.1_Intron|C1orf175_uc010oog.1_Splice_Site_p.I743_splice|C1orf175_uc010ooh.1_Splice_Site|C1orf175_uc009vzq.1_Splice_Site|C1orf175_uc001cxt.1_Splice_Site|C1orf175_uc009vzr.1_5'Flank	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977							integral to membrane	binding				0						CTGTGCCCCAGATCCCAGAAA	0.657													60	158					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55145665	55145665	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55145665C>T	uc010ooe.1	+	13	2652	c.2328C>T	c.(2326-2328)TCC>TCT	p.S776S	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Silent_p.S344S|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.S294S|C1orf175_uc010oof.1_Intron|C1orf175_uc001cxr.1_Intron|C1orf175_uc010oog.1_Silent_p.S776S|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_5'Flank	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	776	Helical; (Potential).					integral to membrane	binding				0						TGGCTAGCTCCTTCATGACCG	0.607													41	209					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55151968	55151968	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55151968G>A	uc010ooe.1	+	15	2882	c.2558G>A	c.(2557-2559)AGC>AAC	p.S853N	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.S421N|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.S371N|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_Intron|C1orf175_uc010oog.1_Missense_Mutation_p.S853N|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.S55N|C1orf175_uc001cxu.2_5'UTR	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	853						integral to membrane	binding				0						TCCGTCAACAGCTGCATGGGC	0.652													12	35					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55174690	55174690	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55174690C>T	uc010ooe.1	+	23	3995	c.3671C>T	c.(3670-3672)TCC>TTC	p.S1224F	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.S742F|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.S425F	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1224						integral to membrane	binding				0						GCTCAAGGGTCCCTGGTCCCC	0.522													29	93					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55174728	55174728	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55174728C>T	uc010ooe.1	+	23	4033	c.3709C>T	c.(3709-3711)CGT>TGT	p.R1237C	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.R755C|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.R438C	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1237						integral to membrane	binding				0						GACAGAAGATCGTCTGAATGA	0.517													25	78					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55175707	55175707	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55175707G>A	uc010ooe.1	+	24	4143	c.3819G>A	c.(3817-3819)CAG>CAA	p.Q1273Q	C1orf175_uc001cxq.2_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.Q791Q|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.Q474Q	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1273						integral to membrane	binding				0						GCTGCTGGCAGAACTCCTGGC	0.617													6	62					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55175726	55175726	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55175726G>A	uc010ooe.1	+	24	4162	c.3838G>A	c.(3838-3840)GGG>AGG	p.G1280R	C1orf175_uc001cxq.2_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.G798R|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.G481R	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1280						integral to membrane	binding				0						GCTGCCGCACGGGAACTCATG	0.617													9	50					0	0	1	0	0
TTC22	55001	broad.mit.edu	37	1	55266666	55266666	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55266666G>A	uc009vzt.1	-	1	276	c.171C>T	c.(169-171)CTC>CTT	p.L57L	TTC22_uc001cxz.3_Silent_p.L57L	NM_001114108	NP_001107580	Q5TAA0	TTC22_HUMAN	tetratricopeptide repeat domain 22 isoform 1	57							binding				0						CCGCCAGCTGGAGCTCCTGCC	0.701													11	17					0	0	1	0	0
C1orf177	163747	broad.mit.edu	37	1	55277720	55277720	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55277720G>A	uc001cyb.3	+	6	674	c.620G>A	c.(619-621)GGG>GAG	p.G207E	C1orf177_uc001cya.3_Missense_Mutation_p.G207E	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	207											0						GTGCTCTAGGGGAGTGGTCTG	0.627													25	119					0	0	1	0	0
C1orf177	163747	broad.mit.edu	37	1	55277722	55277722	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55277722A>T	uc001cyb.3	+	6	676	c.622A>T	c.(622-624)AGT>TGT	p.S208C	C1orf177_uc001cya.3_Missense_Mutation_p.S208C	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	208											0						GCTCTAGGGGAGTGGTCTGGG	0.622													26	124					0	0	1	0	0
C1orf177	163747	broad.mit.edu	37	1	55279591	55279591	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55279591G>A	uc001cyb.3	+	7	921	c.867G>A	c.(865-867)CCG>CCA	p.P289P	C1orf177_uc001cya.3_Silent_p.P289P	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	289											0						CCCGAAACCCGAAAACCCCTA	0.502													38	122					0	0	1	0	0
C1orf177	163747	broad.mit.edu	37	1	55280655	55280655	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55280655C>T	uc001cyb.3	+	8	1047	c.993C>T	c.(991-993)TTC>TTT	p.F331F	C1orf177_uc001cya.3_Silent_p.F331F	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	331											0						AGCCCCCATTCCTGTTGACCT	0.542													50	115					0	0	1	0	0
C1orf177	163747	broad.mit.edu	37	1	55280709	55280709	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55280709C>T	uc001cyb.3	+	8	1101	c.1047C>T	c.(1045-1047)AGC>AGT	p.S349S	C1orf177_uc001cya.3_Silent_p.S349S	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	349											0						TTATGGGAAGCTGGGTAAGTG	0.542													42	105					0	0	1	0	0
DHCR24	1718	broad.mit.edu	37	1	55319263	55319263	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55319263G>A	uc001cyc.1	-	8	1370	c.1241C>T	c.(1240-1242)CCG>CTG	p.P414L	DHCR24_uc010ooi.1_Missense_Mutation_p.P57L|DHCR24_uc010ooj.1_Missense_Mutation_p.P228L|DHCR24_uc010ook.1_Missense_Mutation_p.P373L	NM_014762	NP_055577	Q15392	DHC24_HUMAN	24-dehydrocholesterol reductase precursor	414					anti-apoptosis|apoptosis|cell cycle arrest|cholesterol biosynthetic process|negative regulation of caspase activity|neuroprotection|response to oxidative stress|skin development	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus	delta24-sterol reductase activity|enzyme binding|flavin adenine dinucleotide binding|peptide antigen binding			pancreas(1)	1						CAGGATGAACGGACACAGCCA	0.577													10	23					0	0	1	0	0
TMEM61	199964	broad.mit.edu	37	1	55457675	55457675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55457675G>A	uc001cyd.2	+	3	806	c.532G>A	c.(532-534)GAG>AAG	p.E178K		NM_182532	NP_872338	Q8N0U2	TMM61_HUMAN	transmembrane protein 61	178						integral to membrane					0						ACCCAGCTATGAGAGCATCAG	0.622													17	131					0	0	1	0	0
BSND	7809	broad.mit.edu	37	1	55473947	55473947	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55473947G>A	uc001cye.2	+	4	852	c.609G>A	c.(607-609)ATG>ATA	p.M203I		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	203	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						ACCTGGACATGGACTCCAGTG	0.562													16	39					0	0	1	0	0
BSND	7809	broad.mit.edu	37	1	55474208	55474208	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55474208G>A	uc001cye.2	+	4	1113	c.870G>A	c.(868-870)AAG>AAA	p.K290K		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	290	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						AACCTGAGAAGGAAGAGGAAG	0.582													21	73					0	0	1	0	0
USP24	23358	broad.mit.edu	37	1	55569674	55569675	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55569674_55569675GG>AA	uc001cyg.3	-	39	4419_4420	c.4419_4420CC>TT	c.(4417-4422)AGCCGA>AGTTGA	p.R1474*		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1634					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						GCTGCCAATCGGCTATTCGCTG	0.347													7	6					0	0	1	0	0
USP24	23358	broad.mit.edu	37	1	55572982	55572982	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:55572982G>A	uc001cyg.3	-	37	4212	c.4212C>T	c.(4210-4212)ATC>ATT	p.I1404I		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1564					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						CTGCCAGTAAGATGTTGTCCG	0.463													11	66					0	0	1	0	0
PPAP2B	8613	broad.mit.edu	37	1	56977725	56977725	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:56977725G>A	uc001cyj.1	-	6	1234	c.733C>T	c.(733-735)CGC>TGC	p.R245C		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	245	Helical; (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						TCTGATACGCGAGACAGTCCC	0.572													13	53					0	0	1	0	0
PPAP2B	8613	broad.mit.edu	37	1	57002771	57002771	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57002771G>A	uc001cyj.1	-	3	654	c.153C>T	c.(151-153)TTC>TTT	p.F51F		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	51	Helical; (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						CGATGATGAGGAAGGGGAGGC	0.458													20	74					0	0	1	0	0
PRKAA2	5563	broad.mit.edu	37	1	57161729	57161729	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57161729G>A	uc001cyk.3	+	6	756	c.685G>A	c.(685-687)GGT>AGT	p.G229S		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	229	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						GATCCGAGGGGGTGTCTTTTA	0.443													38	345					0	0	1	0	0
PRKAA2	5563	broad.mit.edu	37	1	57161747	57161747	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57161747G>A	uc001cyk.3	+	6	774	c.703G>A	c.(703-705)GAA>AAA	p.E235K		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	235	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						TTATATCCCAGAATATCTCAA	0.418													115	264					0	0	1	0	0
PRKAA2	5563	broad.mit.edu	37	1	57169747	57169747	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57169747G>A	uc001cyk.3	+	7	963	c.892G>A	c.(892-894)GAA>AAA	p.E298K		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	298					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						AGAAGTGTGTGAAAAATTTGA	0.383													77	179					0	0	1	0	0
PRKAA2	5563	broad.mit.edu	37	1	57169756	57169756	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57169756G>A	uc001cyk.3	+	7	972	c.901G>A	c.(901-903)GAA>AAA	p.E301K		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	301					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						TGAAAAATTTGAATGTACAGA	0.373													15	232					0	0	1	0	0
PRKAA2	5563	broad.mit.edu	37	1	57171830	57171830	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57171830G>A	uc001cyk.3	+	8	1430	c.1359G>A	c.(1357-1359)ATG>ATA	p.M453I		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	453					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						ACGTGAAAATGAGCTTACAAC	0.343													28	63					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57189311	57189311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57189311C>T	uc001cym.3	-	17	2330	c.1924G>A	c.(1924-1926)GAA>AAA	p.E642K	C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	642										ovary(3)|skin(2)	5						CTGTTCTTTTCTAAGTTTTGC	0.313													14	38					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57252863	57252863	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57252863G>A	uc001cym.3	-	4	1344	c.938C>T	c.(937-939)TCC>TTC	p.S313F	C1orf168_uc009vzu.1_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	313										ovary(3)|skin(2)	5						TGGAGACAGGGAGCCCTCTTC	0.483													39	66					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57254689	57254689	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57254689G>A	uc001cym.3	-	3	1282	c.876C>T	c.(874-876)GCC>GCT	p.A292A	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.A292A	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	292										ovary(3)|skin(2)	5						GCCTCTGAAAGGCCTGGAGGT	0.587													7	115					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57257852	57257852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57257852C>T	uc001cym.3	-	2	1040	c.634G>A	c.(634-636)GAT>AAT	p.D212N	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.D212N	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	212										ovary(3)|skin(2)	5						AAAGAGGGATCTTCAGAGACG	0.502													57	136					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57257937	57257937	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57257937C>T	uc001cym.3	-	2	955	c.549G>A	c.(547-549)AGG>AGA	p.R183R	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.R183R	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	183										ovary(3)|skin(2)	5						CCAGCTTTTTCCTGGGTTCCT	0.478													35	113					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57257945	57257945	+	Missense_Mutation	SNP	C	T	T	rs147103664		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57257945C>T	uc001cym.3	-	2	947	c.541G>A	c.(541-543)GAA>AAA	p.E181K	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.E181K	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	181								p.E181K(1)		ovary(3)|skin(2)	5						TTCCTGGGTTCCTCTGGAGTA	0.488													10	126					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57257988	57257988	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57257988G>A	uc001cym.3	-	2	904	c.498C>T	c.(496-498)GCC>GCT	p.A166A	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.A166A	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	166										ovary(3)|skin(2)	5						CCAGATGGATGGCCTTACTTC	0.483													50	85					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57340662	57340662	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57340662G>A	uc001cyo.2	+	3	344	c.212G>A	c.(211-213)GGA>GAA	p.G71E		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	71	TSP type-1 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						AAGTTTGGGGGAACCATCTGC	0.473													14	31					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57347137	57347137	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57347137G>A	uc001cyo.2	+	5	616	c.484G>A	c.(484-486)GAA>AAA	p.E162K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	162	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CCTGACCCAGGAAGATGCTCA	0.348													37	93					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57347212	57347212	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57347212G>A	uc001cyo.2	+	5	691	c.559G>A	c.(559-561)GAG>AAG	p.E187K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	187	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GGAATGGAGGGAGCTTCGATA	0.453													40	122					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57347305	57347305	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57347305G>A	uc001cyo.2	+	5	784	c.652G>A	c.(652-654)GAA>AAA	p.E218K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	218	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GTACCACTTTGAAGTAAGTCT	0.473													36	85					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57351663	57351663	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57351663G>A	uc001cyo.2	+	7	1051	c.919G>A	c.(919-921)GAC>AAC	p.D307N		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	307	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GAGGAAGGATGACATTATGCT	0.403													21	66					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57372396	57372396	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57372396G>A	uc001cyo.2	+	8	1285	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	385	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CATTCAATATGAAGACAAAAT	0.388													73	124					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57372430	57372430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57372430G>A	uc001cyo.2	+	8	1319	c.1187G>A	c.(1186-1188)GGA>GAA	p.G396E		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	396	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GGTTTATCAGGAGACCATTGT	0.423													53	127					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57383352	57383352	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57383352C>T	uc001cyo.2	+	11	1850	c.1718C>T	c.(1717-1719)TCG>TTG	p.S573L		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	573	TSP type-1 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GGAGGGGCCTCGTGTCCAGGG	0.582													21	55					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57395136	57395136	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57395136G>A	uc001cyp.2	-	12	1784	c.1717C>T	c.(1717-1719)CCT>TCT	p.P573S	C8B_uc010oon.1_Missense_Mutation_p.P511S|C8B_uc010ooo.1_Missense_Mutation_p.P521S	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	573	TSP type-1 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						CCATTTTGAGGAGGTGGATTG	0.483													24	57					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57399026	57399026	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57399026C>T	uc001cyp.2	-	10	1601	c.1534G>A	c.(1534-1536)GGA>AGA	p.G512R	C8B_uc010oon.1_Missense_Mutation_p.G450R|C8B_uc010ooo.1_Missense_Mutation_p.G460R	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	512	EGF-like.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ACAGGGACTCCATTTCCTTGG	0.547													33	64					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57399115	57399115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57399115G>A	uc001cyp.2	-	10	1512	c.1445C>T	c.(1444-1446)TCC>TTC	p.S482F	C8B_uc010oon.1_Missense_Mutation_p.S420F|C8B_uc010ooo.1_Missense_Mutation_p.S430F	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	482	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						CACTGTGCTGGAATAGGCAAA	0.473													18	45					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57406576	57406576	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57406576C>T	uc001cyp.2	-	9	1411	c.1344G>A	c.(1342-1344)CTG>CTA	p.L448L	C8B_uc010oon.1_Silent_p.L386L|C8B_uc010ooo.1_Silent_p.L396L	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	448	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ACTCCTGCATCAGGTCCGCCG	0.572													22	71					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57411647	57411647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57411647G>A	uc001cyp.2	-	7	1019	c.952C>T	c.(952-954)CTT>TTT	p.L318F	C8B_uc010oon.1_Missense_Mutation_p.L256F|C8B_uc010ooo.1_Missense_Mutation_p.L266F	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	318	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ACTCTCTGAAGGAACTCGTAA	0.483													25	50					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57415241	57415241	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57415241C>T	uc001cyp.2	-	6	918	c.851G>A	c.(850-852)CGA>CAA	p.R284Q	C8B_uc010oon.1_Missense_Mutation_p.R222Q|C8B_uc010ooo.1_Missense_Mutation_p.R232Q	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	284	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ATGAGAGAATCGTTTGGTTCT	0.254													29	40					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57417739	57417739	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57417739C>T	uc001cyp.2	-	5	715	c.648G>A	c.(646-648)GTG>GTA	p.V216V	C8B_uc010oon.1_Silent_p.V154V|C8B_uc010ooo.1_Silent_p.V164V	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	216	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGTAGCTTTCCACATTGTAGG	0.299													48	97					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57420500	57420500	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57420500C>T	uc001cyp.2	-	4	459	c.392G>A	c.(391-393)GGA>GAA	p.G131E	C8B_uc010oon.1_Missense_Mutation_p.G69E|C8B_uc010ooo.1_Missense_Mutation_p.G79E	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	131	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TACACACCTTCCTAGAATGGA	0.433													17	86					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57422542	57422542	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57422542C>T	uc001cyp.2	-	3	358	c.291G>A	c.(289-291)GGG>GGA	p.G97G	C8B_uc010oon.1_Silent_p.G35G|C8B_uc010ooo.1_Silent_p.G45G	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	97	TSP type-1 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGCACGGTTCCCCATGGAACT	0.522													42	167					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57425699	57425699	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57425699C>T	uc001cyp.2	-	2	310	c.243G>A	c.(241-243)AAG>AAA	p.K81K	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_Silent_p.K29K	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	81	TSP type-1 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TTACCCTTTTCTTCTGACAGG	0.483													15	29					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57425826	57425826	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57425826C>T	uc001cyp.2	-	2	183	c.116G>A	c.(115-117)GGG>GAG	p.G39E	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_5'UTR	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	39					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGCATTTGACCCAAAGGAATG	0.428													8	94					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57425845	57425845	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57425845C>T	uc001cyp.2	-	2	164	c.97G>A	c.(97-99)GAA>AAA	p.E33K	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_5'UTR	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	33					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGTGGCCTTTCACCTCTAAAA	0.393													26	76					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57476410	57476410	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57476410C>T	uc001cys.1	-	16	2300	c.1626G>A	c.(1624-1626)GGG>GGA	p.G542G	DAB1_uc001cyt.1_Silent_p.G540G|DAB1_uc001cyq.1_Silent_p.G540G|DAB1_uc001cyr.1_Silent_p.G456G|DAB1_uc009vzw.1_Silent_p.G524G|DAB1_uc009vzx.1_Silent_p.G542G	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	575					cell differentiation|nervous system development					skin(2)|ovary(1)	3						CACTGGGCTCCCCACTGGGCT	0.448													12	129					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57476416	57476416	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57476416G>A	uc001cys.1	-	16	2294	c.1620C>T	c.(1618-1620)CCC>CCT	p.P540P	DAB1_uc001cyt.1_Silent_p.P538P|DAB1_uc001cyq.1_Silent_p.P538P|DAB1_uc001cyr.1_Silent_p.P454P|DAB1_uc009vzw.1_Silent_p.P522P|DAB1_uc009vzx.1_Silent_p.P540P	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	573					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GCTCCCCACTGGGCTCACCAA	0.443													38	98					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57476429	57476430	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57476429_57476430GG>AA	uc001cys.1	-	16	2280_2281	c.1606_1607CC>TT	c.(1606-1608)CCA>TTA	p.P536L	DAB1_uc001cyt.1_Missense_Mutation_p.P534L|DAB1_uc001cyq.1_Missense_Mutation_p.P534L|DAB1_uc001cyr.1_Missense_Mutation_p.P450L|DAB1_uc009vzw.1_Missense_Mutation_p.P518L|DAB1_uc009vzx.1_Missense_Mutation_p.P536L	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	569					cell differentiation|nervous system development					skin(2)|ovary(1)	3						CTCACCAAATGGATCACTGTTG	0.441													32	84					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57480853	57480853	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57480853G>A	uc001cys.1	-	14	1821	c.1147C>T	c.(1147-1149)CCC>TCC	p.P383S	DAB1_uc001cyt.1_Missense_Mutation_p.P381S|DAB1_uc001cyq.1_Missense_Mutation_p.P381S|DAB1_uc001cyr.1_Missense_Mutation_p.P297S|DAB1_uc009vzw.1_Missense_Mutation_p.P365S|DAB1_uc009vzx.1_Missense_Mutation_p.P383S	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	416					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GGGGTGAGGGGACCTTGGAAC	0.592													27	67					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57481086	57481086	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57481086G>A	uc001cys.1	-	14	1588	c.914C>T	c.(913-915)GCT>GTT	p.A305V	DAB1_uc001cyt.1_Missense_Mutation_p.A303V|DAB1_uc001cyq.1_Missense_Mutation_p.A303V|DAB1_uc001cyr.1_Missense_Mutation_p.A219V|DAB1_uc009vzw.1_Missense_Mutation_p.A287V|DAB1_uc009vzx.1_Missense_Mutation_p.A305V	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	338					cell differentiation|nervous system development					skin(2)|ovary(1)	3						CGGGAGGACAGCGCCCATTGC	0.572													14	25					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57537224	57537224	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57537224C>T	uc001cys.1	-	8	1203	c.529G>A	c.(529-531)GAT>AAT	p.D177N	DAB1_uc001cyt.1_Missense_Mutation_p.D177N|DAB1_uc001cyq.1_Missense_Mutation_p.D177N|DAB1_uc001cyr.1_Intron|DAB1_uc009vzw.1_Missense_Mutation_p.D177N|DAB1_uc009vzx.1_Missense_Mutation_p.D177N	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	177	PID.				cell differentiation|nervous system development					skin(2)|ovary(1)	3						CACTGCTTATCCTTTTGTGCC	0.393													27	61					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57602219	57602219	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57602219T>C	uc001cys.1	-	6	977	c.303A>G	c.(301-303)ACA>ACG	p.T101T	DAB1_uc001cyt.1_Silent_p.T101T|DAB1_uc001cyq.1_Silent_p.T101T|DAB1_uc001cyr.1_Silent_p.T101T|DAB1_uc009vzw.1_Silent_p.T101T|DAB1_uc009vzx.1_Silent_p.T101T	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	101	PID.				cell differentiation|nervous system development					skin(2)|ovary(1)	3						TACTTACCCCTGTCTTCTCAT	0.408													8	53					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57611049	57611049	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:57611049G>A	uc001cys.1	-	5	795	c.121C>T	c.(121-123)CGG>TGG	p.R41W	DAB1_uc001cyt.1_Missense_Mutation_p.R41W|DAB1_uc001cyq.1_Missense_Mutation_p.R41W|DAB1_uc001cyr.1_Missense_Mutation_p.R41W|DAB1_uc009vzw.1_Missense_Mutation_p.R41W|DAB1_uc009vzx.1_Missense_Mutation_p.R41W	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	41	PID.				cell differentiation|nervous system development					skin(2)|ovary(1)	3						GCTTTGTACCGGACCCCTTCA	0.443													36	99					0	0	1	0	0
TACSTD2	4070	broad.mit.edu	37	1	59042069	59042069	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:59042069C>T	uc001cyz.3	-	1	1098	c.760G>A	c.(760-762)GAG>AAG	p.E254K		NM_002353	NP_002344	P09758	TACD2_HUMAN	tumor-associated calcium signal transducer 2	254	Extracellular (Potential).				cell proliferation|cell surface receptor linked signaling pathway|visual perception	cytosol|integral to plasma membrane	receptor activity				0	all_cancers(7;6.54e-05)					AGCGTGCGCTCCACCTGCAGG	0.493													8	21					0	0	1	0	0
MYSM1	114803	broad.mit.edu	37	1	59126874	59126874	+	Missense_Mutation	SNP	G	A	A	rs141454457		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:59126874G>A	uc009wab.1	-	19	2319	c.2296C>T	c.(2296-2298)CGC>TGC	p.R766C	uc001cza.2_5'Flank|MYSM1_uc009waa.1_Missense_Mutation_p.R172C|MYSM1_uc001czc.2_RNA	NM_001085487	NP_001078956	Q5VVJ2	MYSM1_HUMAN	Myb-like, SWIRM and MPN domains 1	766					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin remodeling complex	DNA binding|histone binding|metal ion binding|metallopeptidase activity|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity	p.R766C(1)		skin(1)	1	all_cancers(7;9.36e-06)					GAATCCCGGCGAAAGATTTTA	0.363													23	50					0	0	1	0	0
FGGY	55277	broad.mit.edu	37	1	59844489	59844489	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:59844489G>A	uc001czi.3	+	5	746	c.534G>A	c.(532-534)AAG>AAA	p.K178K	FGGY_uc001czg.2_Silent_p.K66K|FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Silent_p.K178K|FGGY_uc001czj.3_Silent_p.K178K|FGGY_uc001czk.3_Silent_p.K66K|FGGY_uc001czl.3_Silent_p.K90K	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	178					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					TATCGTGGAAGGCAACAGGTG	0.383													29	82					0	0	1	0	0
HOOK1	51361	broad.mit.edu	37	1	60328519	60328519	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60328519G>A	uc009wad.2	+	17	1698	c.1596G>A	c.(1594-1596)CAG>CAA	p.Q532Q	HOOK1_uc001czo.2_Silent_p.Q532Q|HOOK1_uc001czp.2_RNA|HOOK1_uc010oor.1_Silent_p.Q490Q	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	532	Sufficient for interaction with microtubules.|Potential.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					AATCTTTACAGGAACAAGGTT	0.368													21	94					0	0	1	0	0
HOOK1	51361	broad.mit.edu	37	1	60330893	60330893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60330893C>T	uc009wad.2	+	19	1822	c.1720C>T	c.(1720-1722)CTT>TTT	p.L574F	HOOK1_uc001czo.2_Missense_Mutation_p.L574F|HOOK1_uc001czp.2_Intron|HOOK1_uc010oor.1_Missense_Mutation_p.L532F	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	574	Potential.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					CATTGAAGATCTTCAGCCAGA	0.333													19	60					0	0	1	0	0
CYP2J2	1573	broad.mit.edu	37	1	60359414	60359415	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60359414_60359415GG>AA	uc001czq.2	-	9	1422_1423	c.1417_1418CC>TT	c.(1417-1419)CCC>TTC	p.P473F		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	473					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					ATTGTTTGGGGGCCTGAAGGTA	0.46													121	315					0	0	1	0	0
CYP2J2	1573	broad.mit.edu	37	1	60366656	60366656	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60366656G>A	uc001czq.2	-	8	1316	c.1311C>T	c.(1309-1311)GCC>GCT	p.A437A		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	437					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					AAGGCATAAAGGCTTCCCTTT	0.522													10	84					0	0	1	0	0
CYP2J2	1573	broad.mit.edu	37	1	60370618	60370618	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60370618C>T	uc001czq.2	-	7	1121	c.1116G>A	c.(1114-1116)ATG>ATA	p.M372I		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	372					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					TGATGTTGCCCATTCTCTGCA	0.557													34	85					0	0	1	0	0
CYP2J2	1573	broad.mit.edu	37	1	60375621	60375621	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60375621G>A	uc001czq.2	-	5	701	c.696C>T	c.(694-696)GTC>GTT	p.V232V		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	232					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					TCCATGGAAAGACATTGTAGA	0.338													13	31					0	0	1	0	0
CYP2J2	1573	broad.mit.edu	37	1	60377841	60377841	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60377841C>T	uc001czq.2	-	3	521	c.516G>A	c.(514-516)GAG>GAA	p.E172E		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	172					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					CACCGTTCTCCTCTTTTATTG	0.358													18	31					0	0	1	0	0
C1orf87	127795	broad.mit.edu	37	1	60463381	60463381	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60463381C>T	uc001czs.1	-	11	1472	c.1380G>A	c.(1378-1380)GTG>GTA	p.V460V	C1orf87_uc001czr.1_Silent_p.V52V	NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	460							calcium ion binding			ovary(1)|breast(1)	2						CAGCTGGATTCACGAAGGGCT	0.502													22	53					0	0	1	0	0
C1orf87	127795	broad.mit.edu	37	1	60476093	60476093	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60476093G>A	uc001czs.1	-	9	1255	c.1163C>T	c.(1162-1164)TCT>TTT	p.S388F	C1orf87_uc001czr.1_5'Flank	NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	388							calcium ion binding			ovary(1)|breast(1)	2						CAAATCAGAAGAAGCTCTGGT	0.388													32	72					0	0	1	0	0
C1orf87	127795	broad.mit.edu	37	1	60499180	60499180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60499180G>A	uc001czs.1	-	7	1089	c.997C>T	c.(997-999)CGC>TGC	p.R333C		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	333							calcium ion binding			ovary(1)|breast(1)	2						GAGAACGAGCGATCTTCTTTT	0.433													28	112					0	0	1	0	0
C1orf87	127795	broad.mit.edu	37	1	60506800	60506800	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:60506800G>A	uc001czs.1	-	4	438	c.346C>T	c.(346-348)CCC>TCC	p.P116S		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	116							calcium ion binding			ovary(1)|breast(1)	2						GCTTGACTGGGAATCTTAACA	0.458													14	23					0	0	1	0	0
NFIA	4774	broad.mit.edu	37	1	61553906	61553906	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:61553906G>A	uc001czw.2	+	2	597	c.113G>A	c.(112-114)CGA>CAA	p.R38Q	NFIA_uc001czy.2_Missense_Mutation_p.R30Q|NFIA_uc010oos.1_Missense_Mutation_p.R83Q|NFIA_uc001czv.2_Missense_Mutation_p.R38Q	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	38	CTF/NF-I.				DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						GCCCGAAAACGAAAATACTTC	0.438													33	172					0	0	1	0	0
NFIA	4774	broad.mit.edu	37	1	61824847	61824847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:61824847G>A	uc001czw.2	+	6	1331	c.847G>A	c.(847-849)GAT>AAT	p.D283N	NFIA_uc001czy.2_Missense_Mutation_p.D275N|NFIA_uc010oos.1_Missense_Mutation_p.D328N|NFIA_uc001czv.2_Missense_Mutation_p.D283N	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	283					DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						GTCTGTGGAGGATGAAATGGA	0.512													14	186					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62257019	62257019	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62257019G>A	uc001dab.2	+	9	1183	c.1069_splice	c.e9-1	p.D357_splice	INADL_uc009waf.1_Splice_Site_p.D357_splice|INADL_uc001daa.2_Splice_Site_p.D357_splice|INADL_uc001dad.3_Splice_Site_p.D54_splice	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like						intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TTTCCTTTTAGGACAGTTCTC	0.338													7	63					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62299448	62299448	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62299448G>A	uc001dab.2	+	17	2217	c.2103G>A	c.(2101-2103)TTG>TTA	p.L701L	INADL_uc009waf.1_Silent_p.L701L|INADL_uc001daa.2_Silent_p.L701L|INADL_uc001dad.3_Silent_p.L398L|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	701	PDZ 5.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TCAGCATTTTGGATTACCAGG	0.378													25	125					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62327271	62327271	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62327271G>A	uc001dab.2	+	19	2485	c.2371G>A	c.(2371-2373)GAA>AAA	p.E791K	INADL_uc009waf.1_Missense_Mutation_p.E791K|INADL_uc001daa.2_Missense_Mutation_p.E791K|INADL_uc001dad.3_Missense_Mutation_p.E488K|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	791					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						AAGCAGTAATGAAGACAAGAC	0.234													57	133					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62329911	62329911	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62329911G>A	uc001dab.2	+	20	2555	c.2441G>A	c.(2440-2442)GGA>GAA	p.G814E	INADL_uc009waf.1_Missense_Mutation_p.G814E|INADL_uc001daa.2_Missense_Mutation_p.G814E|INADL_uc001dad.3_Missense_Mutation_p.G511E|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	814					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TATTTATAGGGATTTAGAGAT	0.358													11	71					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62329940	62329940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62329940G>A	uc001dab.2	+	20	2584	c.2470G>A	c.(2470-2472)GAA>AAA	p.E824K	INADL_uc009waf.1_Missense_Mutation_p.E824K|INADL_uc001daa.2_Missense_Mutation_p.E824K|INADL_uc001dad.3_Missense_Mutation_p.E521K|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	824					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TTTTAAAGAAGAACTTGTGGA	0.373													15	75					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62330131	62330131	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62330131G>A	uc001dab.2	+	20	2775	c.2661G>A	c.(2659-2661)GAG>GAA	p.E887E	INADL_uc009waf.1_Silent_p.E887E|INADL_uc001daa.2_Silent_p.E887E|INADL_uc001dad.3_Silent_p.E584E|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	887					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CATCCATGGAGTTGTATCCCT	0.418													29	89					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62516686	62516686	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62516686G>A	uc001dab.2	+	31	4195	c.4081G>A	c.(4081-4083)GAA>AAA	p.E1361K	INADL_uc009waf.1_Missense_Mutation_p.E1361K|INADL_uc001daa.2_Missense_Mutation_p.E1361K|INADL_uc001dad.3_Missense_Mutation_p.E1058K|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Missense_Mutation_p.E145K|INADL_uc009wag.2_Missense_Mutation_p.E145K|INADL_uc010oou.1_Missense_Mutation_p.E34K	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1361					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TGGCAGCGTCGAAGTTGGTAT	0.388													13	36					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62550251	62550251	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62550251G>A	uc001dab.2	+	33	4422	c.4308G>A	c.(4306-4308)ATG>ATA	p.M1436I	INADL_uc009waf.1_Missense_Mutation_p.M1436I|INADL_uc001daa.2_Missense_Mutation_p.M1436I|INADL_uc001dad.3_Missense_Mutation_p.M1133I|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Missense_Mutation_p.M220I|INADL_uc009wag.2_Missense_Mutation_p.M220I|INADL_uc010oou.1_Missense_Mutation_p.M109I	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1436					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GACAGGAAATGATTATAGAAA	0.468													21	86					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62579893	62579893	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62579893C>T	uc001dab.2	+	35	4744	c.4630C>T	c.(4630-4632)CTG>TTG	p.L1544L	INADL_uc009waf.1_Silent_p.L1574L|INADL_uc001daa.2_Silent_p.L1516L|INADL_uc001dad.3_Silent_p.L1241L|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Silent_p.L358L|INADL_uc009wag.2_Silent_p.L328L|INADL_uc010oou.1_Silent_p.L189L	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1544	PDZ 9.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TGGCCGGGGCCTGGGCCTGAG	0.537													14	46					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62586953	62586953	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62586953C>T	uc001dab.2	+	38	5105	c.4991C>T	c.(4990-4992)TCC>TTC	p.S1664F	INADL_uc001dac.2_RNA|INADL_uc009wag.2_Missense_Mutation_p.S448F	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1664					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TCAGATCCTTCCCAGAAAAAT	0.423													28	73					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62672641	62672641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62672641G>A	uc001dae.3	+	3	643	c.341G>A	c.(340-342)GGG>GAG	p.G114E		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	114										ovary(1)|skin(1)	2						caaaaaacagggatggtaggg	0.05													34	116					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62675455	62675455	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62675455G>A	uc001dae.3	+	4	1311	c.1009G>A	c.(1009-1011)GAT>AAT	p.D337N		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	337										ovary(1)|skin(1)	2						TAACTTTCAGGATAAAACCCT	0.294													19	79					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62675553	62675554	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62675553_62675554GG>AA	uc001dae.3	+	4	1409_1410	c.1107_1108GG>AA	c.(1105-1110)GAGGAG>GAAAAG	p.E370K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	370	Glu-rich.									ovary(1)|skin(1)	2						CTAAGCCAGAGGAGATGAAAAA	0.436													30	139					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62675662	62675662	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62675662G>A	uc001dae.3	+	4	1518	c.1216G>A	c.(1216-1218)GAG>AAG	p.E406K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	406	Glu-rich.									ovary(1)|skin(1)	2						GCTggaggaggaggaggaaga	0.244													19	47					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62676119	62676119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62676119C>T	uc001dae.3	+	4	1975	c.1673C>T	c.(1672-1674)CCC>CTC	p.P558L		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	558										ovary(1)|skin(1)	2						TTGGCCTCTCCCTCAAAGTCA	0.438													29	70					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62718868	62718868	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62718868C>T	uc001dah.3	-	8	2930	c.2553G>A	c.(2551-2553)GTG>GTA	p.V851V	KANK4_uc001dai.3_Silent_p.V223V|KANK4_uc001daf.3_5'UTR|KANK4_uc001dag.3_Silent_p.V207V	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	851	ANK 1.									ovary(3)|skin(2)|lung(1)	6						TCTGATGGTCCACATTGCAGA	0.537													27	87					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62738910	62738910	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62738910C>T	uc001dah.3	-	3	2243	c.1866G>A	c.(1864-1866)AAG>AAA	p.K622K	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	622										ovary(3)|skin(2)|lung(1)	6						CCGGTGGCTCCTTGGGTGGGT	0.607													23	41					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62739651	62739651	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62739651C>T	uc001dah.3	-	3	1502	c.1125G>A	c.(1123-1125)GAG>GAA	p.E375E	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	375	Potential.									ovary(3)|skin(2)|lung(1)	6						CTTTGATTTCCTCTTCCTGCT	0.542													33	101					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62739693	62739693	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62739693C>T	uc001dah.3	-	3	1460	c.1083G>A	c.(1081-1083)GAG>GAA	p.E361E	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	361	Potential.									ovary(3)|skin(2)|lung(1)	6						GTGCCAGTTCCTCGGTTCTTC	0.567													25	103					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62739945	62739945	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62739945G>A	uc001dah.3	-	3	1208	c.831C>T	c.(829-831)TTC>TTT	p.F277F	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	277	Pro-rich.									ovary(3)|skin(2)|lung(1)	6						AGCCAGGGGTGAACAACACCT	0.542													13	15					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62740234	62740234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62740234C>T	uc001dah.3	-	3	919	c.542G>A	c.(541-543)AGC>AAC	p.S181N	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	181										ovary(3)|skin(2)|lung(1)	6						GGGCCCCAGGCTCAGGCCTGG	0.637													4	33					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62740730	62740730	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62740730C>T	uc001dah.3	-	3	423	c.46G>A	c.(46-48)GAG>AAG	p.E16K	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	16										ovary(3)|skin(2)|lung(1)	6						GGGTCTTTCTCTTCATCCCCC	0.453													28	77					0	0	1	0	0
DOCK7	85440	broad.mit.edu	37	1	62941524	62941524	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:62941524G>A	uc001daq.2	-	45	5816	c.5782C>T	c.(5782-5784)CGT>TGT	p.R1928C	DOCK7_uc001dan.2_Missense_Mutation_p.R1791C|DOCK7_uc001dao.2_Missense_Mutation_p.R1789C|DOCK7_uc001dap.2_Missense_Mutation_p.R1908C|DOCK7_uc001dam.2_Missense_Mutation_p.R1110C|DOCK7_uc010oov.1_Missense_Mutation_p.R669C|DOCK7_uc001dar.1_Missense_Mutation_p.R102C	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	1939	DHR-2.				activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						ATGAATCGACGAAGATTGTAA	0.403													48	121					0	0	1	0	0
DOCK7	85440	broad.mit.edu	37	1	63005497	63005497	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:63005497G>A	uc001daq.2	-	26	3146	c.3112C>T	c.(3112-3114)CCA>TCA	p.P1038S	DOCK7_uc001dan.2_Missense_Mutation_p.P899S|DOCK7_uc001dao.2_Missense_Mutation_p.P899S|DOCK7_uc001dap.2_Missense_Mutation_p.P1007S|DOCK7_uc001dam.2_Missense_Mutation_p.P218S	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	1038					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						AAACGTTCTGGAAAACGACTT	0.348													25	45					0	0	1	0	0
DOCK7	85440	broad.mit.edu	37	1	63044633	63044633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:63044633G>A	uc001daq.2	-	17	1910	c.1876C>T	c.(1876-1878)CCT>TCT	p.P626S	DOCK7_uc001dan.2_Missense_Mutation_p.P518S|DOCK7_uc001dao.2_Missense_Mutation_p.P518S|DOCK7_uc001dap.2_Missense_Mutation_p.P626S	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	626	DHR-1.				activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						TGAAAATCAGGAGACCTTCAT	0.239													30	66					0	0	1	0	0
ATG4C	84938	broad.mit.edu	37	1	63282323	63282323	+	Missense_Mutation	SNP	C	T	T	rs146646910		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:63282323C>T	uc001dat.2	+	4	400	c.238C>T	c.(238-240)CGT>TGT	p.R80C	ATG4C_uc001dau.2_Missense_Mutation_p.R80C	NM_178221	NP_835739	Q96DT6	ATG4C_HUMAN	APG4 autophagy 4 homolog C isoform 8	80					autophagic vacuole assembly|protein targeting to membrane|proteolysis	cytosol|extracellular region	cysteine-type endopeptidase activity			ovary(1)	1						AGAAGAATTTCGTAAAGATTT	0.398													8	88					0	0	1	0	0
ROR1	4919	broad.mit.edu	37	1	64643413	64643413	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:64643413C>T	uc001dbj.2	+	9	2088	c.1689C>T	c.(1687-1689)TTC>TTT	p.F563F	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	563	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						TCCATGAGTTCCTCATCATGA	0.488													22	70					0	0	1	0	0
ROR1	4919	broad.mit.edu	37	1	64644097	64644097	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:64644097C>T	uc001dbj.2	+	9	2772	c.2373C>T	c.(2371-2373)TTC>TTT	p.F791F	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	791	Cytoplasmic (Potential).|Pro-rich.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						ATTACATGTTCCCGAGCCAGG	0.507													26	96					0	0	1	0	0
ROR1	4919	broad.mit.edu	37	1	64644340	64644340	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:64644340C>T	uc001dbj.2	+	9	3015	c.2616C>T	c.(2614-2616)CCC>CCT	p.P872P	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	872	Cytoplasmic (Potential).|Ser/Thr-rich.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						CTAGCTTGCCCTCATCAGGAT	0.507													13	52					0	0	1	0	0
UBE2U	148581	broad.mit.edu	37	1	64671346	64671346	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:64671346G>A	uc001dbn.1	+	2	335	c.91G>A	c.(91-93)GAA>AAA	p.E31K		NM_152489	NP_689702	Q5VVX9	UBE2U_HUMAN	ubiquitin-conjugating enzyme E2U (putative)	31							ATP binding|protein binding|ubiquitin-protein ligase activity				0						GCCTGTAAGTGAAGATATGAT	0.289													29	72					0	0	1	0	0
UBE2U	148581	broad.mit.edu	37	1	64671357	64671357	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:64671357G>A	uc001dbn.1	+	2	346	c.102G>A	c.(100-102)ATG>ATA	p.M34I		NM_152489	NP_689702	Q5VVX9	UBE2U_HUMAN	ubiquitin-conjugating enzyme E2U (putative)	34							ATP binding|protein binding|ubiquitin-protein ligase activity				0						AAGATATGATGGAATGGGAAG	0.274													21	92					0	0	1	0	0
UBE2U	148581	broad.mit.edu	37	1	64707407	64707407	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:64707407G>A	uc001dbn.1	+	8	912	c.668G>A	c.(667-669)TGG>TAG	p.W223*		NM_152489	NP_689702	Q5VVX9	UBE2U_HUMAN	ubiquitin-conjugating enzyme E2U (putative)	223							ATP binding|protein binding|ubiquitin-protein ligase activity				0						CAGAAAGAATGGAATTTAAAG	0.299													11	43					0	0	1	0	0
CACHD1	57685	broad.mit.edu	37	1	65124444	65124444	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:65124444G>A	uc001dbo.1	+	13	1791	c.1686G>A	c.(1684-1686)GTG>GTA	p.V562V	CACHD1_uc001dbp.1_Silent_p.V317V|CACHD1_uc001dbq.1_Silent_p.V317V	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	613	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						AAATACCTGTGAAACAACTGA	0.428													7	11					0	0	1	0	0
CACHD1	57685	broad.mit.edu	37	1	65129479	65129479	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:65129479C>T	uc001dbo.1	+	14	2005	c.1900C>T	c.(1900-1902)CTC>TTC	p.L634F	CACHD1_uc001dbp.1_Missense_Mutation_p.L389F|CACHD1_uc001dbq.1_Missense_Mutation_p.L389F|CACHD1_uc010opa.1_5'Flank	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	685	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						CACCGCCTATCTCAGCGACAA	0.587													34	163					0	0	1	0	0
CACHD1	57685	broad.mit.edu	37	1	65141095	65141095	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:65141095G>A	uc001dbo.1	+	20	2691	c.2586G>A	c.(2584-2586)ACG>ACA	p.T862T	CACHD1_uc001dbp.1_Silent_p.T617T|CACHD1_uc001dbq.1_Silent_p.T617T|CACHD1_uc010opa.1_Silent_p.T106T	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	913	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						GGGATTTGACGAACCTTGTGC	0.468											OREG0013544	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	73					0	0	1	0	0
JAK1	3716	broad.mit.edu	37	1	65325929	65325929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:65325929G>A	uc001dbu.1	-	9	1442	c.1193C>T	c.(1192-1194)TCC>TTC	p.S398F	JAK1_uc009wam.1_Missense_Mutation_p.S386F	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	398	FERM.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		CTCCTCGTGGGAAGAGAGCTT	0.542			Mis		ALL								18	52					0	0	1	0	0
LEPR	3953	broad.mit.edu	37	1	66067164	66067164	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:66067164C>T	uc001dci.2	+	9	1286	c.1084C>T	c.(1084-1086)CCC>TCC	p.P362S	LEPR_uc001dcg.2_Missense_Mutation_p.P362S|LEPR_uc001dch.2_Missense_Mutation_p.P362S|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.P362S|LEPR_uc001dck.2_Missense_Mutation_p.P362S	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	362	Extracellular (Potential).|Ig-like.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CAAGATTGTTCCCTCAAAAGA	0.348													10	79					0	0	1	0	0
LEPR	3953	broad.mit.edu	37	1	66075705	66075705	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:66075705C>T	uc001dci.2	+	13	2030	c.1828C>T	c.(1828-1830)CAG>TAG	p.Q610*	LEPR_uc001dcg.2_Nonsense_Mutation_p.Q610*|LEPR_uc001dch.2_Nonsense_Mutation_p.Q610*|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Nonsense_Mutation_p.Q610*|LEPR_uc001dck.2_Nonsense_Mutation_p.Q610*	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	610	Extracellular (Potential).|Fibronectin type-III 2.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CTATGCTGTTCAGGTGCGCTG	0.413													72	174					0	0	1	0	0
LEPR	3953	broad.mit.edu	37	1	66075971	66075971	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:66075971C>T	uc001dci.2	+	14	2189	c.1987C>T	c.(1987-1989)CTT>TTT	p.L663F	LEPR_uc001dcg.2_Missense_Mutation_p.L663F|LEPR_uc001dch.2_Missense_Mutation_p.L663F|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.L663F|LEPR_uc001dck.2_Missense_Mutation_p.L663F	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	663	Extracellular (Potential).|Fibronectin type-III 3.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGTCACTTTACTTTGGAAGGT	0.284													7	50					0	0	1	0	0
LEPR	3953	broad.mit.edu	37	1	66101939	66101939	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:66101939G>A	uc001dci.2	+	20	2941	c.2739G>A	c.(2737-2739)TTG>TTA	p.L913L	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	913	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CTCTTCTTTTGGAGCCTGAAA	0.368													68	198					0	0	1	0	0
PDE4B	5142	broad.mit.edu	37	1	66829101	66829101	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:66829101C>T	uc001dcn.2	+	12	1322	c.1131C>T	c.(1129-1131)CTC>CTT	p.L377L	PDE4B_uc009war.2_Silent_p.L285L|PDE4B_uc001dco.2_Silent_p.L377L|PDE4B_uc001dcp.2_Silent_p.L362L|PDE4B_uc001dcq.2_Silent_p.L205L|PDE4B_uc009was.2_Silent_p.L144L	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	377					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	AAAGAGACCTCCTAAAGACAT	0.353													16	49					0	0	1	0	0
SGIP1	84251	broad.mit.edu	37	1	67155970	67155970	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:67155970C>T	uc001dcr.2	+	17	1758	c.1541C>T	c.(1540-1542)TCC>TTC	p.S514F	SGIP1_uc010opd.1_Missense_Mutation_p.S114F|SGIP1_uc001dcs.2_Missense_Mutation_p.S114F|SGIP1_uc001dct.2_Missense_Mutation_p.S114F|SGIP1_uc009wat.2_Missense_Mutation_p.S308F	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	514					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						TCAACCAATTCCTTGAGCGCA	0.468													68	175					0	0	1	0	0
TCTEX1D1	200132	broad.mit.edu	37	1	67220438	67220438	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:67220438G>A	uc001dcv.2	+	2	228	c.97G>A	c.(97-99)GAA>AAA	p.E33K	TCTEX1D1_uc009wau.2_RNA|TCTEX1D1_uc009wav.2_RNA	NM_152665	NP_689878	Q8N7M0	TC1D1_HUMAN	Tctex1 domain containing 1	33											0						TTGGCGAAAGGAAATTCATGG	0.338													11	40					0	0	1	0	0
INSL5	10022	broad.mit.edu	37	1	67263912	67263912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:67263912G>A	uc001dcw.2	-	2	227	c.192C>T	c.(190-192)TCC>TCT	p.S64S		NM_005478	NP_005469	Q9Y5Q6	INSL5_HUMAN	insulin-like 5 precursor	64						extracellular region	hormone activity				0						GGAGCTGGAAGGAGTTTCCTG	0.478													19	76					0	0	1	0	0
C1orf141	400757	broad.mit.edu	37	1	67559037	67559037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:67559037G>A	uc001ddl.1	-	7	965	c.854C>T	c.(853-855)TCT>TTT	p.S285F	C1orf141_uc001ddm.1_Missense_Mutation_p.S285F|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	285										ovary(1)	1						CGCTTTAAAAGACATAGGGAT	0.333													25	107					0	0	1	0	0
C1orf141	400757	broad.mit.edu	37	1	67560983	67560983	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:67560983C>T	uc001ddl.1	-	6	649	c.538G>A	c.(538-540)GAA>AAA	p.E180K	C1orf141_uc001ddm.1_Missense_Mutation_p.E180K|C1orf141_uc001ddn.1_Intron	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	180										ovary(1)	1						TTTTTCAATTCATCCTCAAAG	0.323													15	38					0	0	1	0	0
IL12RB2	3595	broad.mit.edu	37	1	67861377	67861377	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:67861377G>A	uc001ddu.2	+	16	2834	c.2194G>A	c.(2194-2196)GGA>AGA	p.G732R	IL12RB2_uc010oqi.1_3'UTR|IL12RB2_uc010oqj.1_3'UTR|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Missense_Mutation_p.G646R|IL12RB2_uc010oqm.1_3'UTR|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	732	Cytoplasmic (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						AAGGGAAAAAGGAATCCAAGG	0.532													18	52					0	0	1	0	0
WLS	79971	broad.mit.edu	37	1	68619310	68619310	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:68619310G>A	uc001def.1	-	5	964	c.693C>T	c.(691-693)ACC>ACT	p.T231T	uc001deb.1_Intron|uc001dec.1_Intron|WLS_uc001dee.2_Silent_p.T229T|WLS_uc001deg.1_Silent_p.T140T|WLS_uc009wbf.1_Silent_p.T186T	NM_024911	NP_079187	Q5T9L3	WLS_HUMAN	G protein-coupled receptor 177 isoform 1	231	Lumenal (Potential).|Interacts with Wnt proteins (By similarity).				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Wnt receptor signaling pathway	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	signal transducer activity				0						ACCACACCTTGGTGAAGCCTC	0.463													19	49					0	0	1	0	0
RPE65	6121	broad.mit.edu	37	1	68903887	68903887	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:68903887G>A	uc001dei.1	-	10	1165	c.1111C>T	c.(1111-1113)CCT>TCT	p.P371S		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	371					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						ATATTCAAAGGAAGTACATAT	0.368													20	45					0	0	1	0	0
RPE65	6121	broad.mit.edu	37	1	68905294	68905294	+	Silent	SNP	G	A	A	rs114379164	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:68905294G>A	uc001dei.1	-	7	729	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	225					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						ATTGTACAACGATCTCTGACT	0.363													27	102					0	0	1	0	0
RPE65	6121	broad.mit.edu	37	1	68910518	68910518	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:68910518G>A	uc001dei.1	-	4	348	c.294C>T	c.(292-294)ATC>ATT	p.I98I		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	98					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						CTGTTATGACGATCCTTTTCT	0.423													23	53					0	0	1	0	0
RPE65	6121	broad.mit.edu	37	1	68912536	68912536	+	Silent	SNP	G	A	A	rs146357166	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:68912536G>A	uc001dei.1	-	3	156	c.102C>T	c.(100-102)ATC>ATT	p.I34I		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	34					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						GCCAGAGGGGGATCCTGCCTG	0.542													21	68					0	0	1	0	0
DEPDC1	55635	broad.mit.edu	37	1	68947229	68947229	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:68947229G>A	uc001dem.3	-	9	1946	c.1829C>T	c.(1828-1830)CCC>CTC	p.P610L	DEPDC1_uc001dej.3_5'UTR|DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Missense_Mutation_p.P326L	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	610	Interaction with ZNF224.				intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		ATTTGGTGGGGGAAGTAACAA	0.413													14	21					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70257751	70257751	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70257751G>A	uc001dep.2	+	2	245	c.215G>A	c.(214-216)CGA>CAA	p.R72Q	LRRC7_uc001deo.1_Missense_Mutation_p.R110Q|LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	72	LRR 3.					centrosome|focal adhesion|nucleolus	protein binding	p.R72G(1)		ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CAAGCTCTACGAAAACTAAGT	0.294													26	78					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70303932	70303932	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70303932G>A	uc001dep.2	+	5	529	c.499G>A	c.(499-501)GAG>AAG	p.E167K	LRRC7_uc001deo.1_Missense_Mutation_p.E205K|LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	167	LRR 7.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GCGGATCTTGGAGTTAAGAGA	0.254													8	45					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70502256	70502256	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70502256C>T	uc001dep.2	+	18	2153	c.2123C>T	c.(2122-2124)TCC>TTC	p.S708F	LRRC7_uc009wbg.2_Intron|LRRC7_uc001deq.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	708						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AAAGTGGGGTCCTTGCAGACA	0.448													43	102					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70504230	70504230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70504230C>T	uc001dep.2	+	19	2639	c.2609C>T	c.(2608-2610)CCA>CTA	p.P870L	LRRC7_uc009wbg.2_Missense_Mutation_p.P154L|LRRC7_uc001deq.2_Missense_Mutation_p.P111L	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	870						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						ACTACCAGCCCATTGCCTGAA	0.468													51	112					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70504556	70504556	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70504556G>A	uc001dep.2	+	19	2965	c.2935G>A	c.(2935-2937)GAA>AAA	p.E979K	LRRC7_uc009wbg.2_Missense_Mutation_p.E263K|LRRC7_uc001deq.2_Missense_Mutation_p.E220K	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	979						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGGAAGCCACGAACGACCGGA	0.453													21	70					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70504631	70504631	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70504631G>A	uc001dep.2	+	19	3040	c.3010G>A	c.(3010-3012)GAT>AAT	p.D1004N	LRRC7_uc009wbg.2_Missense_Mutation_p.D288N|LRRC7_uc001deq.2_Missense_Mutation_p.D245N	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1004						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CCCAATGCTGGATGATGAGAT	0.468													16	55					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70541868	70541868	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70541868C>T	uc001dep.2	+	22	4255	c.4225C>T	c.(4225-4227)CAG>TAG	p.Q1409*	LRRC7_uc009wbg.2_Nonsense_Mutation_p.Q693*|LRRC7_uc001deq.2_Nonsense_Mutation_p.Q603*	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1409						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CCAGCAATTTCAGTCACCATT	0.522													30	60					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70555477	70555477	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70555477G>A	uc001dep.2	+	23	4436	c.4406G>A	c.(4405-4407)GGA>GAA	p.G1469E	LRRC7_uc009wbg.2_Missense_Mutation_p.G753E|LRRC7_uc001deq.2_Missense_Mutation_p.G663E	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1469	PDZ.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGTGGACAAGGAAATCCATTC	0.303													23	77					0	0	1	0	0
LRRC40	55631	broad.mit.edu	37	1	70644631	70644631	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70644631G>A	uc001der.1	-	6	759	c.707C>T	c.(706-708)CCT>CTT	p.P236L		NM_017768	NP_060238	Q9H9A6	LRC40_HUMAN	leucine rich repeat containing 40	236	LRR 7.									ovary(1)	1						CAATTCAGGAGGTATAGTTTC	0.313													8	43					0	0	1	0	0
SFRS11	9295	broad.mit.edu	37	1	70716379	70716379	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:70716379C>T	uc001des.2	+	13	1470	c.1346C>T	c.(1345-1347)TCC>TTC	p.S449F	SFRS11_uc001det.2_Missense_Mutation_p.S448F|SFRS11_uc001dev.2_Missense_Mutation_p.S259F|SFRS11_uc001dew.2_Missense_Mutation_p.S389F	NM_004768	NP_004759	Q05519	SRS11_HUMAN	splicing factor, arginine/serine-rich 11	449					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						GAAACAGGTTCCCCTAAAACA	0.408													11	69					0	0	1	0	0
ZRANB2	9406	broad.mit.edu	37	1	71530793	71530793	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:71530793G>A	uc001dft.2	-	10	1024	c.957C>T	c.(955-957)TCC>TCT	p.S319S	uc001dfr.2_Intron|ZRANB2_uc001dfs.2_3'UTR	NM_203350	NP_976225	O95218	ZRAB2_HUMAN	zinc finger protein 265 isoform 1	319	Required for nuclear targeting.				mRNA processing|RNA splicing	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						AACCAGAATGGGATGATCCAG	0.348													7	61					0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507303	74507303	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:74507303C>T	uc001dfy.3	-	7	1504	c.1312G>A	c.(1312-1314)GAA>AAA	p.E438K	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	438										ovary(2)	2						CTTACTTTTTCTTTATGGTAT	0.343													47	107					0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507520	74507520	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:74507520C>T	uc001dfy.3	-	7	1287	c.1095G>A	c.(1093-1095)AAG>AAA	p.K365K	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	365										ovary(2)	2						CTGCATTATTCTTCAATGAAC	0.338													22	72					0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74540379	74540379	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:74540379C>T	uc001dfy.3	-	6	1155	c.963G>A	c.(961-963)ATG>ATA	p.M321I	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	321										ovary(2)	2						TTTTTGATTTCATGCCTAGAT	0.224													8	13					0	0	1	0	0
TNNI3K	51086	broad.mit.edu	37	1	75005954	75005954	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75005954G>A	uc001dgf.1	+	24	2439	c.2388G>A	c.(2386-2388)GAG>GAA	p.E796E	TNNI3K_uc001dge.1_Silent_p.E897E	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	796						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TGTCTTTGGAGGAGATGAAAA	0.358													20	57					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75036941	75036942	+	Missense_Mutation	DNP	CC	TT	TT	rs139857791	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75036941_75036942CC>TT	uc001dgg.2	-	14	4671_4672	c.4452_4453GG>AA	c.(4450-4455)AGGGAA>AGAAAA	p.E1485K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1485	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GGACTCAATTCCCTCTCTCCCT	0.545													69	157					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75037470	75037470	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75037470C>T	uc001dgg.2	-	14	4143	c.3924G>A	c.(3922-3924)GCG>GCA	p.A1308A		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1308	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGTCCTGCATCGCTTCTGTCT	0.542													68	144					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75037935	75037935	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75037935C>T	uc001dgg.2	-	14	3678	c.3459G>A	c.(3457-3459)GTG>GTA	p.V1153V		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1153	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ATATGGGAACCACTGTCTCTT	0.468													24	76					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75038129	75038129	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75038129C>T	uc001dgg.2	-	14	3484	c.3265G>A	c.(3265-3267)GAA>AAA	p.E1089K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1089	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AAAGCATCTTCATCCTTGAGT	0.433													74	184					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75038215	75038215	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75038215C>T	uc001dgg.2	-	14	3398	c.3179G>A	c.(3178-3180)CGA>CAA	p.R1060Q		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1060	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGCTTTCCTTCGCTCTCTTGC	0.428													71	191					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75038256	75038256	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75038256C>T	uc001dgg.2	-	14	3357	c.3138G>A	c.(3136-3138)AGG>AGA	p.R1046R		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1046	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AAATTTCTTTCCTATCATCTT	0.453													56	224					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75038664	75038664	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75038664G>A	uc001dgg.2	-	14	2949	c.2730C>T	c.(2728-2730)GCC>GCT	p.A910A		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	910	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCAAGTTCAGGGCTGCTGCTT	0.542													77	227					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75038703	75038703	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75038703C>T	uc001dgg.2	-	14	2910	c.2691G>A	c.(2689-2691)CAG>CAA	p.Q897Q		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	897	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCTCTAAACCCTGTTCCCCTT	0.512													85	265					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75038981	75038981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75038981G>A	uc001dgg.2	-	14	2632	c.2413C>T	c.(2413-2415)CAT>TAT	p.H805Y		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	805	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GGAGCCTCATGAACAGCTCCT	0.537													47	123					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75042611	75042611	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75042611G>A	uc001dgg.2	-	13	2405	c.2186C>T	c.(2185-2187)TCA>TTA	p.S729L	uc001dgh.2_5'Flank	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	729	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TAATGGCAATGAATCCTTTCC	0.383													13	36					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75055504	75055504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75055504C>T	uc001dgg.2	-	12	2206	c.1987G>A	c.(1987-1989)GAA>AAA	p.E663K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E457K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	663	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCAAAGCTTTCGTCTATTGGC	0.408													26	108					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75055528	75055529	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75055528_75055529CC>TT	uc001dgg.2	-	12	2181_2182	c.1962_1963GG>AA	c.(1960-1965)GTGGAG>GTAAAG	p.E655K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E449K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	655	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GGCTTGGTCTCCACATCTGCTT	0.401													22	95					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75065478	75065478	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75065478C>T	uc001dgg.2	-	11	1846	c.1627G>A	c.(1627-1629)GAG>AAG	p.E543K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E337K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	543	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTTTCACTCTCTTTTTCAGGG	0.408													53	225					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75065531	75065531	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75065531C>T	uc001dgg.2	-	11	1793	c.1574G>A	c.(1573-1575)GGA>GAA	p.G525E	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.G319E	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	525	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTGCGGTATTCCATTCATTTG	0.388													61	167					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75072303	75072303	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75072303C>T	uc001dgg.2	-	10	1690	c.1471G>A	c.(1471-1473)GAA>AAA	p.E491K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E285K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	491	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AAAGTATTTTCCTGGTCGTCT	0.358													12	181					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75078455	75078455	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75078455G>A	uc001dgg.2	-	9	1258	c.1039C>T	c.(1039-1041)CCC>TCC	p.P347S	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.P141S	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	347										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGACTGAAGGGGAAACCATGA	0.413													20	44					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75107041	75107041	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75107041C>T	uc001dgg.2	-	5	637	c.418G>A	c.(418-420)GAA>AAA	p.E140K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	140										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GAATGTCCTTCATCAACCAGA	0.423													22	104					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75108723	75108723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75108723G>A	uc001dgg.2	-	4	522	c.303C>T	c.(301-303)ATC>ATT	p.I101I		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	101										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TAAACCTCTGGATTCGCTCCT	0.338													28	73					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75108735	75108735	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75108735C>T	uc001dgg.2	-	4	510	c.291G>A	c.(289-291)AGG>AGA	p.R97R		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	97										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTCGCTCCTTCCTAGCTAAGG	0.318													27	77					0	0	1	0	0
LHX8	431707	broad.mit.edu	37	1	75609555	75609555	+	Silent	SNP	C	T	T	rs147867930		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75609555C>T	uc001dgo.2	+	7	1300	c.636C>T	c.(634-636)GCC>GCT	p.A212A	LHX8_uc001dgq.2_Silent_p.A151A	NM_001001933	NP_001001933	Q68G74	LHX8_HUMAN	LIM homeobox 8	212						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TGGAAGGTGCCCTCCTCACAG	0.393													15	46					0	0	1	0	0
SLC44A5	204962	broad.mit.edu	37	1	75679468	75679468	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75679468G>A	uc001dgu.2	-	22	2028	c.1884C>T	c.(1882-1884)GCC>GCT	p.A628A	SLC44A5_uc001dgt.2_Silent_p.A628A|SLC44A5_uc001dgs.2_Silent_p.A586A|SLC44A5_uc001dgr.2_Silent_p.A586A|SLC44A5_uc010oqz.1_Silent_p.A667A|SLC44A5_uc010ora.1_Silent_p.A622A|SLC44A5_uc010orb.1_Silent_p.A498A	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	628	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						AGAATAGGAAGGCCAGAACAC	0.343													40	92					0	0	1	0	0
SLC44A5	204962	broad.mit.edu	37	1	75708675	75708675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75708675C>T	uc001dgu.2	-	8	511	c.367G>A	c.(367-369)GAA>AAA	p.E123K	SLC44A5_uc001dgt.2_Missense_Mutation_p.E123K|SLC44A5_uc001dgs.2_Missense_Mutation_p.E81K|SLC44A5_uc001dgr.2_Missense_Mutation_p.E81K|SLC44A5_uc010oqz.1_Missense_Mutation_p.E162K|SLC44A5_uc010ora.1_Missense_Mutation_p.E117K|SLC44A5_uc010orb.1_5'UTR	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	123	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						AAAAATTTTTCTGGGCACTTG	0.398													7	106					0	0	1	0	0
SLC44A5	204962	broad.mit.edu	37	1	75740713	75740713	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:75740713C>T	uc001dgu.2	-	6	334	c.190G>A	c.(190-192)GAC>AAC	p.D64N	SLC44A5_uc001dgt.2_Missense_Mutation_p.D64N|SLC44A5_uc001dgs.2_Missense_Mutation_p.D22N|SLC44A5_uc001dgr.2_Missense_Mutation_p.D22N|SLC44A5_uc010oqz.1_Missense_Mutation_p.D103N|SLC44A5_uc010ora.1_Missense_Mutation_p.D58N|SLC44A5_uc010orb.1_Intron	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	64	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						CTTCTGGGGTCCCCATGTACC	0.493													5	27					0	0	1	0	0
ASB17	127247	broad.mit.edu	37	1	76397607	76397607	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:76397607C>T	uc001dhe.1	-	1	510	c.370G>A	c.(370-372)GAC>AAC	p.D124N	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	124					intracellular signal transduction					ovary(1)	1						CAACTTCTGTCTTGAACATAG	0.338													6	47					0	0	1	0	0
ASB17	127247	broad.mit.edu	37	1	76397716	76397716	+	Silent	SNP	G	A	A	rs11811988		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:76397716G>A	uc001dhe.1	-	1	401	c.261C>T	c.(259-261)CTC>CTT	p.L87L	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	87					intracellular signal transduction					ovary(1)	1						CAGTGAAGTCGAGGTTAAAAC	0.378													7	68					0	0	1	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77515942	77515942	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:77515942G>A	uc001dhi.2	+	4	847	c.672_splice	c.e4-1	p.R224_splice	ST6GALNAC5_uc010ori.1_Splice_Site_p.E88_splice|ST6GALNAC5_uc009wbw.2_Intron	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E						protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						GTTCCTTCCAGGAAGATATCC	0.423													11	175					0	0	1	0	0
PIGK	10026	broad.mit.edu	37	1	77620246	77620246	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:77620246G>A	uc001dhk.2	-	9	919	c.874C>T	c.(874-876)CAG>TAG	p.Q292*	PIGK_uc010orj.1_Nonsense_Mutation_p.Q216*|PIGK_uc009wbx.2_Nonsense_Mutation_p.Q198*|PIGK_uc001dhl.1_Nonsense_Mutation_p.Q292*	NM_005482	NP_005473	Q92643	GPI8_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	292	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein thiol-disulfide exchange|proteolysis	GPI-anchor transamidase complex	cysteine-type endopeptidase activity|GPI-anchor transamidase activity|protein binding			ovary(2)|pancreas(1)	3						GGATCCCTCTGAAAAAGATCA	0.358													19	61					0	0	1	0	0
AK5	26289	broad.mit.edu	37	1	77984380	77984380	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:77984380G>A	uc001dhn.2	+	11	1536	c.1279G>A	c.(1279-1281)GAC>AAC	p.D427N	AK5_uc001dho.2_Missense_Mutation_p.D401N	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	427					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						ATTGATCAGAGACATTATGGA	0.468													13	48					0	0	1	0	0
FAM73A	374986	broad.mit.edu	37	1	78269072	78269072	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:78269072C>T	uc001dhx.2	+	4	523	c.491C>T	c.(490-492)TCT>TTT	p.S164F	FAM73A_uc010ork.1_Missense_Mutation_p.S164F|FAM73A_uc010orl.1_Missense_Mutation_p.S126F|FAM73A_uc001dhy.1_5'UTR	NM_198549	NP_940951	Q8NAN2	FA73A_HUMAN	hypothetical protein LOC374986	164						integral to membrane				ovary(1)	1				Colorectal(170;0.226)		TATTCAGGTTCTGCACAGAGT	0.294													16	48					0	0	1	0	0
NEXN	91624	broad.mit.edu	37	1	78383885	78383885	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:78383885G>A	uc001dic.3	+	5	671	c.374G>A	c.(373-375)CGA>CAA	p.R125Q	NEXN_uc001dia.3_Missense_Mutation_p.R125Q|NEXN_uc009wcb.1_Missense_Mutation_p.R61Q|NEXN_uc001dib.3_Missense_Mutation_p.R61Q|NEXN_uc001did.1_Missense_Mutation_p.R49Q|NEXN_uc001dif.1_Missense_Mutation_p.R17Q	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	125	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		GAGGAGGAACGAAAACGCAGA	0.363													35	83					0	0	1	0	0
NEXN	91624	broad.mit.edu	37	1	78392180	78392180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:78392180G>A	uc001dic.3	+	7	868	c.571G>A	c.(571-573)GAT>AAT	p.D191N	NEXN_uc001dia.3_Missense_Mutation_p.D177N|NEXN_uc009wcb.1_Missense_Mutation_p.D113N|NEXN_uc001dib.3_Missense_Mutation_p.D127N|NEXN_uc001did.1_Missense_Mutation_p.D101N|NEXN_uc001dif.1_Missense_Mutation_p.D83N	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	191	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		GAATTTTGAGGATCTAGAAAA	0.318													9	97					0	0	1	0	0
NEXN	91624	broad.mit.edu	37	1	78398979	78398979	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:78398979G>A	uc001dic.3	+	10	1363	c.1066G>A	c.(1066-1068)GAC>AAC	p.D356N	NEXN_uc001dia.3_Missense_Mutation_p.D342N|NEXN_uc009wcb.1_Missense_Mutation_p.D278N|NEXN_uc001dib.3_Missense_Mutation_p.D292N|NEXN_uc001did.1_Missense_Mutation_p.D266N|NEXN_uc001dif.1_Missense_Mutation_p.D248N|NEXN_uc001dig.3_5'UTR	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	356	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		AGTAGATGATGACTCCCCAGA	0.299													4	35					0	0	1	0	0
FUBP1	8880	broad.mit.edu	37	1	78432425	78432425	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:78432425G>A	uc001dii.2	-	7	515	c.426C>T	c.(424-426)GGC>GGT	p.G142G	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Silent_p.G163G	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	142	KH 1.				transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						TTTCTGGAAGGCCACCACTGT	0.323													20	43					0	0	1	0	0
FUBP1	8880	broad.mit.edu	37	1	78444657	78444657	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:78444657G>A	uc001dii.2	-	1	121	c.32C>T	c.(31-33)TCT>TTT	p.S11F	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Missense_Mutation_p.S11F|DNAJB4_uc010orn.1_5'Flank	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	11					transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						TGAGCCAGAAGAGGGGGGAGG	0.448													16	37					0	0	1	0	0
PTGFR	5737	broad.mit.edu	37	1	78958579	78958579	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:78958579C>T	uc001din.2	+	2	417	c.151C>T	c.(151-153)CTC>TTC	p.L51F	PTGFR_uc001dim.2_Missense_Mutation_p.L51F	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	51	Helical; Name=1; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	CATCGCCATTCTCATGAAGGC	0.443													58	108					0	0	1	0	0
PTGFR	5737	broad.mit.edu	37	1	78959016	78959016	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:78959016G>A	uc001din.2	+	2	854	c.588G>A	c.(586-588)TGG>TGA	p.W196*	PTGFR_uc001dim.2_Nonsense_Mutation_p.W196*	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	196	Extracellular (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	TCAAAGACTGGGAAGATAGAT	0.408													11	114					0	0	1	0	0
IFI44	10561	broad.mit.edu	37	1	79121182	79121182	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:79121182C>T	uc001dip.3	+	5	950	c.826C>T	c.(826-828)CGT>TGT	p.R276C	IFI44_uc010orr.1_Missense_Mutation_p.R276C|IFI44_uc010ors.1_5'UTR	NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	276					response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						CGGTAACATTCGTGATAGATA	0.353													11	74					0	0	1	0	0
IFI44	10561	broad.mit.edu	37	1	79128395	79128395	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:79128395G>A	uc001dip.3	+	8	1244	c.1120G>A	c.(1120-1122)GAA>AAA	p.E374K		NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	374					response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						GCAGCTAGAGGAAGTCCAAAG	0.343													10	87					0	0	1	0	0
ELTD1	64123	broad.mit.edu	37	1	79387418	79387418	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:79387418G>A	uc001diq.3	-	9	1293	c.1137C>T	c.(1135-1137)ACC>ACT	p.T379T		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	379	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TGCCATTCATGGTATCAGGTG	0.398													30	80					0	0	1	0	0
ELTD1	64123	broad.mit.edu	37	1	79387423	79387423	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:79387423C>T	uc001diq.3	-	9	1288	c.1132G>A	c.(1132-1134)GAT>AAT	p.D378N		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	378	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TTCATGGTATCAGGTGAGTAA	0.403													14	99					0	0	1	0	0
ELTD1	64123	broad.mit.edu	37	1	79392661	79392661	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:79392661G>A	uc001diq.3	-	8	1149	c.993C>T	c.(991-993)GTC>GTT	p.V331V		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	331	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		CTGAAGATATGACTCTTTCCT	0.318													25	71					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82402423	82402423	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:82402423G>A	uc001dit.3	+	5	480	c.299G>A	c.(298-300)CGA>CAA	p.R100Q	LPHN2_uc001dis.2_Missense_Mutation_p.R100Q|LPHN2_uc001diu.2_Missense_Mutation_p.R100Q|LPHN2_uc001div.2_Missense_Mutation_p.R100Q|LPHN2_uc009wcd.2_Missense_Mutation_p.R100Q	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	100	Extracellular (Potential).|SUEL-type lectin.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TGCAACAATCGAACACAGTGT	0.318													39	87					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82416145	82416146	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:82416145_82416146CC>TT	uc001dit.3	+	7	1652_1653	c.1471_1472CC>TT	c.(1471-1473)CCA>TTA	p.P491L	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.P491L|LPHN2_uc001div.2_Missense_Mutation_p.P491L|LPHN2_uc009wcd.2_Missense_Mutation_p.P491L|LPHN2_uc001diw.2_Missense_Mutation_p.P62L	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	491	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GGTTGAACGACCATGCCCTAAG	0.376													22	68					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82421702	82421702	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:82421702C>T	uc001dit.3	+	10	2105	c.1924C>T	c.(1924-1926)CTT>TTT	p.L642F	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.L642F|LPHN2_uc001div.2_Missense_Mutation_p.L642F|LPHN2_uc009wcd.2_Missense_Mutation_p.L642F|LPHN2_uc001diw.2_Missense_Mutation_p.L226F	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	655	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AGCTGACAATCTTTTAGAACC	0.348													12	68					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82447513	82447513	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:82447513C>T	uc001dit.3	+	18	3265	c.3084C>T	c.(3082-3084)TTC>TTT	p.F1028F	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Silent_p.F1028F|LPHN2_uc001div.2_Silent_p.F1028F|LPHN2_uc009wcd.2_Silent_p.F1028F|LPHN2_uc001diw.2_Silent_p.F612F|LPHN2_uc009wce.1_Silent_p.F129F	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1041	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TTGGCGCTTTCGCTCTTCTGT	0.383													94	318					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82456472	82456472	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:82456472G>A	uc001dit.3	+	21	4036	c.3855G>A	c.(3853-3855)AAG>AAA	p.K1285K	LPHN2_uc001dis.2_Silent_p.K265K|LPHN2_uc001diu.2_Silent_p.K1285K|LPHN2_uc001div.2_3'UTR|LPHN2_uc009wcd.2_3'UTR|LPHN2_uc001diw.2_Silent_p.K912K	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1341	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AACCCCAGAAGAAAGTGAAGT	0.517													46	98					0	0	1	0	0
LPAR3	23566	broad.mit.edu	37	1	85279804	85279804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:85279804C>T	uc001dkl.2	-	2	826	c.787G>A	c.(787-789)GGC>AGC	p.G263S	LPAR3_uc009wcj.1_Missense_Mutation_p.G263S	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	263	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						CAGTTCAGGCCGTCGAGGAGC	0.582													34	65					0	0	1	0	0
LPAR3	23566	broad.mit.edu	37	1	85331096	85331096	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:85331096C>T	uc001dkl.2	-	1	747	c.708G>A	c.(706-708)AAG>AAA	p.K236K	LPAR3_uc009wcj.1_Silent_p.K236K	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	236	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						TCTTCATTAGCTTCATGGGTG	0.418													17	21					0	0	1	0	0
LPAR3	23566	broad.mit.edu	37	1	85331570	85331570	+	Silent	SNP	G	A	A	rs142600008		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:85331570G>A	uc001dkl.2	-	1	273	c.234C>T	c.(232-234)TTC>TTT	p.F78F	LPAR3_uc009wcj.1_Silent_p.F78F	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	78	Helical; Name=2; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						CAATTCCAGCGAAGAAATCGG	0.433													23	180					0	0	1	0	0
LPAR3	23566	broad.mit.edu	37	1	85331609	85331609	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:85331609G>A	uc001dkl.2	-	1	234	c.195C>T	c.(193-195)TTC>TTT	p.F65F	LPAR3_uc009wcj.1_Silent_p.F65F	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	65	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						ACAGGTAGTAGAAGGGGAAAT	0.393													26	129					0	0	1	0	0
MCOLN2	255231	broad.mit.edu	37	1	85397184	85397184	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:85397184G>A	uc001dkm.2	-	12	1644	c.1403C>T	c.(1402-1404)ACC>ATC	p.T468I	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	468						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		TTGGGCAAAGGTTGCAAACAT	0.388													6	107					0	0	1	0	0
MCOLN2	255231	broad.mit.edu	37	1	85424379	85424379	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:85424379G>A	uc001dkm.2	-	3	485	c.244C>T	c.(244-246)CGT>TGT	p.R82C	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	82						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		AAACCAAAACGAACAAGCTAA	0.333													14	47					0	0	1	0	0
WDR63	126820	broad.mit.edu	37	1	85570255	85570255	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:85570255C>T	uc001dkt.2	+	14	1719	c.1528C>T	c.(1528-1530)CAA>TAA	p.Q510*	WDR63_uc009wcl.2_Nonsense_Mutation_p.Q471*	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	510	WD 2.									upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		AATATGCTGTCAACTTGTCAC	0.328													14	47					0	0	1	0	0
BCL10	8915	broad.mit.edu	37	1	85733503	85733503	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:85733503G>A	uc001dkz.2	-	4	1214	c.509C>T	c.(508-510)TCT>TTT	p.S170F		NM_003921	NP_003912	O95999	BCL10_HUMAN	B-cell CLL/lymphoma 10	170					apoptosis|cellular response to mechanical stimulus|innate immune response|interleukin-6 biosynthetic process|lymphotoxin A biosynthetic process|negative regulation of mature B cell apoptosis|neural tube closure|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-8 biosynthetic process|positive regulation of mast cell cytokine production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of transcription, DNA-dependent|protein homooligomerization|response to molecule of bacterial origin|T cell receptor signaling pathway	CBM complex|cytosol|lysosome|membrane raft|nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protease binding|protein C-terminus binding|protein kinase B binding|protein self-association|transcription coactivator activity|ubiquitin binding|ubiquitin protein ligase binding			lung(2)	2				all cancers(265;0.0114)|Epithelial(280;0.0311)		ATTCAGAGAAGAATTAGTAGA	0.448			T	IGH@	MALT 								20	150					0	0	1	0	0
DDAH1	23576	broad.mit.edu	37	1	85817238	85817238	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:85817238G>A	uc001dlb.2	-	3	589	c.428C>T	c.(427-429)TCC>TTC	p.S143F	DDAH1_uc001dlc.2_Missense_Mutation_p.S40F|uc001dla.1_Intron|DDAH1_uc010osb.1_Missense_Mutation_p.S43F|DDAH1_uc009wco.2_Missense_Mutation_p.S40F	NM_012137	NP_036269	O94760	DDAH1_HUMAN	dimethylarginine dimethylaminohydrolase 1	143					arginine catabolic process|citrulline metabolic process|nitric oxide mediated signal transduction		dimethylargininase activity|metal ion binding				0				all cancers(265;0.0318)|Epithelial(280;0.0657)	L-Citrulline(DB00155)	TGTCCTTTTGGAAAGGCCCAC	0.363													11	105					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86196269	86196269	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86196269C>T	uc001dlj.2	-	60	5147	c.5105G>A	c.(5104-5106)CGA>CAA	p.R1702Q	COL24A1_uc001dli.2_Missense_Mutation_p.R817Q|COL24A1_uc010osd.1_Missense_Mutation_p.R1002Q|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1702	Fibrillar collagen NC1.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		GTAATACTTTCGTTCAGTTTT	0.413													32	82					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86200608	86200608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86200608G>A	uc001dlj.2	-	59	4864	c.4822C>T	c.(4822-4824)CAT>TAT	p.H1608Y	COL24A1_uc001dli.2_Missense_Mutation_p.H723Y|COL24A1_uc010osd.1_Missense_Mutation_p.H908Y|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1608	Fibrillar collagen NC1.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CTCAGTAAATGAAGGAAGTTC	0.428													10	75					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86249817	86249817	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86249817G>A	uc001dlj.2	-	50	4242	c.4200C>T	c.(4198-4200)TTC>TTT	p.F1400F	COL24A1_uc001dli.2_Silent_p.F536F|COL24A1_uc010osd.1_Silent_p.F700F|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1400	Collagen-like 16.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		GGAATCCTTGGAAACCTGTCA	0.358													28	76					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86340354	86340354	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86340354C>T	uc001dlj.2	-	35	3158	c.3116G>A	c.(3115-3117)GGA>GAA	p.G1039E	COL24A1_uc001dli.2_Missense_Mutation_p.G175E|COL24A1_uc010osd.1_Missense_Mutation_p.G339E|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1039	Collagen-like 9.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TTCCCCAGTTCCTCCAACACT	0.438													14	34					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86355248	86355248	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86355248C>T	uc001dlj.2	-	32	3013	c.2971G>A	c.(2971-2973)GAG>AAG	p.E991K	COL24A1_uc001dli.2_Missense_Mutation_p.E127K|COL24A1_uc010osd.1_Missense_Mutation_p.E291K|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	991	Collagen-like 8.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CTTACTGGCTCTCCTGGAAGT	0.378													33	75					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86487924	86487924	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86487924G>A	uc001dlj.2	-	18	2297	c.2255C>T	c.(2254-2256)TCA>TTA	p.S752L	COL24A1_uc010osd.1_Missense_Mutation_p.S52L|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	752	Collagen-like 4.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CAAACCTACTGAAGGCCCTGA	0.433													25	56					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86524856	86524856	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86524856C>T	uc001dlj.2	-	9	1796	c.1754G>A	c.(1753-1755)GGA>GAA	p.G585E	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Missense_Mutation_p.G585E	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	585	Collagen-like 2.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TCCTGGAATTCCCTGAAATAA	0.333													13	50					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86590635	86590635	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86590635C>T	uc001dlj.2	-	3	1426	c.1384G>A	c.(1384-1386)GAA>AAA	p.E462K	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Missense_Mutation_p.E462K	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	462					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TAGCTATTTTCGATGGGATAA	0.368													16	68					0	0	1	0	0
CLCA2	9635	broad.mit.edu	37	1	86896591	86896591	+	Silent	SNP	C	T	T	rs147947036	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86896591C>T	uc001dlr.3	+	4	684	c.522C>T	c.(520-522)TTC>TTT	p.F174F		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	174	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		GGGGTGTGTTCGATGAGTATA	0.373													50	105					0	0	1	0	0
CLCA2	9635	broad.mit.edu	37	1	86905850	86905850	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86905850G>A	uc001dlr.3	+	8	1385	c.1223G>A	c.(1222-1224)GGA>GAA	p.G408E		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	408	VWFA.|Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		AAACTGAATGGAAAAGCTTAT	0.393													51	139					0	0	1	0	0
CLCA2	9635	broad.mit.edu	37	1	86919144	86919144	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86919144T>C	uc001dlr.3	+	13	2410	c.2248T>C	c.(2248-2250)TTT>CTT	p.F750L		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	750	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		AGGAGGCTCCTTTTCAGTGCT	0.488													7	110					0	0	1	0	0
CLCA1	1179	broad.mit.edu	37	1	86954766	86954766	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86954766G>A	uc001dlt.2	+	8	1399	c.1270G>A	c.(1270-1272)GAG>AAG	p.E424K	CLCA1_uc001dls.1_Missense_Mutation_p.E363K	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	424	VWFA.				calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		GTGCTTTAACGAGGTCAAACA	0.468													16	71					0	0	1	0	0
CLCA1	1179	broad.mit.edu	37	1	86954832	86954832	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86954832G>A	uc001dlt.2	+	8	1465	c.1336G>A	c.(1336-1338)GAG>AAG	p.E446K	CLCA1_uc001dls.1_Missense_Mutation_p.E385K	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	446	VWFA.				calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		TCAAGAACTAGAGGAGCTGTC	0.398													7	44					0	0	1	0	0
CLCA1	1179	broad.mit.edu	37	1	86959980	86959980	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86959980G>A	uc001dlt.2	+	11	1920	c.1791G>A	c.(1789-1791)ACG>ACA	p.T597T	CLCA1_uc001dls.1_Silent_p.T536T	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	597					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		CTTCCAAAACGAACAAGGACA	0.517													12	43					0	0	1	0	0
CLCA1	1179	broad.mit.edu	37	1	86965435	86965435	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:86965435G>A	uc001dlt.2	+	14	2581	c.2452G>A	c.(2452-2454)GAA>AAA	p.E818K		NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	818					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		CATCCCAAAGGAAGCCAACTC	0.363													37	160					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87025895	87025895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:87025895C>T	uc009wcs.2	+	3	346	c.302C>T	c.(301-303)GCT>GTT	p.A101V	CLCA4_uc009wct.2_5'UTR|CLCA4_uc009wcu.2_Intron	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	101						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		CATTCTCAGGCTGATGTTATA	0.353													31	81					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87026001	87026001	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:87026001C>T	uc009wcs.2	+	3	452	c.408C>T	c.(406-408)GAC>GAT	p.D136D	CLCA4_uc009wct.2_5'UTR|CLCA4_uc009wcu.2_Intron	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	136						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TCACCCCTGACCTTCTACTTG	0.383													35	69					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87029421	87029421	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:87029421C>T	uc009wcs.2	+	4	570	c.526C>T	c.(526-528)CGT>TGT	p.R176C	CLCA4_uc009wct.2_Intron|CLCA4_uc009wcu.2_Intron	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	176						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		GCCTTTCTACCGTGCTAAGTC	0.398													27	75					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87040294	87040294	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:87040294G>A	uc009wcs.2	+	10	1583	c.1539G>A	c.(1537-1539)GTG>GTA	p.V513V	CLCA4_uc009wct.2_Silent_p.V276V|CLCA4_uc009wcu.2_Silent_p.V333V	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	513						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		ATAGTACAGTGGGAAAGGACA	0.393													26	63					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87040428	87040429	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:87040428_87040429GA>AT	uc009wcs.2	+	10	1717_1718	c.1673_1674GA>AT	c.(1672-1674)GGA>GAT	p.G558D	CLCA4_uc009wct.2_Missense_Mutation_p.G321D|CLCA4_uc009wcu.2_Missense_Mutation_p.G378D	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	558						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		AGTATTCCAGGAACTGCAAAGG	0.381													12	63					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87045045	87045045	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:87045045G>A	uc009wcs.2	+	13	2175	c.2131G>A	c.(2131-2133)GAA>AAA	p.E711K	CLCA4_uc009wct.2_Missense_Mutation_p.E474K|CLCA4_uc009wcu.2_Missense_Mutation_p.E531K	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	711						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		AGGGGAAATTGAAGCAAACCC	0.413													27	48					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87045064	87045064	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:87045064C>T	uc009wcs.2	+	13	2194	c.2150C>T	c.(2149-2151)CCT>CTT	p.P717L	CLCA4_uc009wct.2_Missense_Mutation_p.P480L|CLCA4_uc009wcu.2_Missense_Mutation_p.P537L	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	717						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		CCGCCAAGACCTGAAATTGAT	0.438													32	67					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87045156	87045156	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:87045156C>T	uc009wcs.2	+	13	2286	c.2242C>T	c.(2242-2244)CCC>TCC	p.P748S	CLCA4_uc009wct.2_Missense_Mutation_p.P511S|CLCA4_uc009wcu.2_Missense_Mutation_p.P568S	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	748						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		CCCAAGCCTTCCCTTGCCTGA	0.468													67	134					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87045909	87045909	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:87045909C>T	uc009wcs.2	+	14	2685	c.2641C>T	c.(2641-2643)CCT>TCT	p.P881S	CLCA4_uc009wct.2_Missense_Mutation_p.P644S|CLCA4_uc009wcu.2_Missense_Mutation_p.P701S	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	881						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		tacacctactcctactcctac	0.264													14	48					0	0	1	0	0
GBP3	2635	broad.mit.edu	37	1	89477649	89477649	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89477649C>T	uc001dmt.2	-	7	1135	c.930G>A	c.(928-930)ATG>ATA	p.M310I	GBP3_uc010oss.1_Missense_Mutation_p.M231I|GBP3_uc001dmu.2_Missense_Mutation_p.M176I|GBP3_uc001dmv.2_Intron	NM_018284	NP_060754	Q9H0R5	GBP3_HUMAN	guanylate binding protein 3	310						integral to membrane	GTP binding|GTPase activity			ovary(1)|pancreas(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0103)|Epithelial(280;0.0293)		CTGCGTTCTCCATGCAGGGCA	0.498													27	49					0	0	1	0	0
GBP3	2635	broad.mit.edu	37	1	89481012	89481012	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89481012G>A	uc001dmt.2	-	3	481	c.276C>T	c.(274-276)ACC>ACT	p.T92T	GBP3_uc010oss.1_Silent_p.T13T|GBP3_uc001dmu.2_5'UTR|GBP3_uc001dmv.2_RNA	NM_018284	NP_060754	Q9H0R5	GBP3_HUMAN	guanylate binding protein 3	92						integral to membrane	GTP binding|GTPase activity			ovary(1)|pancreas(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0103)|Epithelial(280;0.0293)		GCAGGACTAAGGTGTGTTCTG	0.458													48	131					0	0	1	0	0
GBP1	2633	broad.mit.edu	37	1	89521767	89521767	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89521767G>A	uc001dmx.2	-	8	1520	c.1300C>T	c.(1300-1302)CGT>TGT	p.R434C		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	434					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		ACAAAGAGACGATAGCCCCCT	0.428													121	342					0	0	1	0	0
GBP1	2633	broad.mit.edu	37	1	89521887	89521887	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89521887C>T	uc001dmx.2	-	8	1400	c.1180G>A	c.(1180-1182)GAC>AAC	p.D394N		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	394					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		TTACAAAAGTCATCCCGCTTT	0.393													45	140					0	0	1	0	0
GBP1	2633	broad.mit.edu	37	1	89524656	89524656	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89524656C>T	uc001dmx.2	-	5	719	c.499G>A	c.(499-501)GAT>AAT	p.D167N		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	167					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		TCAGCTGAATCCTCAACCTCA	0.453													40	74					0	0	1	0	0
GBP1	2633	broad.mit.edu	37	1	89525033	89525033	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89525033C>T	uc001dmx.2	-	4	615	c.395G>A	c.(394-396)GGA>GAA	p.G132E		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	132					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		GTTGATGGTTCCTATGCTATT	0.527													43	158					0	0	1	0	0
GBP7	388646	broad.mit.edu	37	1	89618032	89618032	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89618032C>T	uc001dna.2	-	5	683	c.544G>A	c.(544-546)GAT>AAT	p.D182N	GBP2_uc001dmy.1_5'Flank	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	182						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		AGGGTAAAATCTCGAACAGTC	0.468													31	154					0	0	1	0	0
GBP7	388646	broad.mit.edu	37	1	89618454	89618454	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89618454G>A	uc001dna.2	-	4	464	c.325C>T	c.(325-327)CCT>TCT	p.P109S	GBP2_uc001dmy.1_5'Flank	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	109						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		TCACTCTTAGGGTCACTCTAG	0.313													5	58					0	0	1	0	0
GBP4	115361	broad.mit.edu	37	1	89658656	89658656	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89658656C>T	uc001dnb.2	-	5	717	c.601G>A	c.(601-603)GAG>AAG	p.E201K		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	201						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		AACTTTAGCTCCAGGGTAAAA	0.493													32	94					0	0	1	0	0
GBP4	115361	broad.mit.edu	37	1	89660999	89660999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89660999C>T	uc001dnb.2	-	3	460	c.344G>A	c.(343-345)GGC>GAC	p.G115D		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	115	GTP (By similarity).					cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		ATCGCCCAGGCCCTCGGTGTC	0.512													32	81					0	0	1	0	0
GBP4	115361	broad.mit.edu	37	1	89662818	89662818	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89662818C>T	uc001dnb.2	-	2	326	c.210G>A	c.(208-210)ATG>ATA	p.M70I		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	70						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		CAAGACGATTCATGAGATAGG	0.488													19	56					0	0	1	0	0
GBP5	115362	broad.mit.edu	37	1	89733119	89733119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89733119C>T	uc001dnc.2	-	5	946	c.409G>A	c.(409-411)GGT>AGT	p.G137S	GBP5_uc001dnd.2_Missense_Mutation_p.G137S|GBP5_uc001dne.1_Missense_Mutation_p.G137S	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	137						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		TCGATAGCACCCTGATCAATT	0.453													19	45					0	0	1	0	0
GBP5	115362	broad.mit.edu	37	1	89735049	89735049	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89735049C>T	uc001dnc.2	-	3	727	c.190G>A	c.(190-192)GGC>AGC	p.G64S	GBP5_uc001dnd.2_Missense_Mutation_p.G64S|GBP5_uc001dne.1_Missense_Mutation_p.G64S	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	64						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		TACCACTCACCCTTGTTCTTC	0.507													49	113					0	0	1	0	0
GBP6	163351	broad.mit.edu	37	1	89844102	89844102	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89844102G>A	uc001dnf.2	+	5	829	c.555G>A	c.(553-555)CTG>CTA	p.L185L	GBP6_uc010ost.1_Silent_p.L55L	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	185							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		ATTTCACTCTGGAGCTGAAGT	0.483													31	102					0	0	1	0	0
GBP6	163351	broad.mit.edu	37	1	89847259	89847259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89847259G>A	uc001dnf.2	+	7	1152	c.878G>A	c.(877-879)GGA>GAA	p.G293E	GBP6_uc010ost.1_Missense_Mutation_p.G163E	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	293							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		TTAGGTCTGGGAACTCTGGCA	0.438													35	97					0	0	1	0	0
LOC400759	400759	broad.mit.edu	37	1	89886716	89886716	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89886716G>A	uc009wcy.1	+	4		c.494G>A				NR_003133				Homo sapiens cDNA, FLJ17004.												0						AATAGCATAGGAACCATTAAC	0.522													21	65					0	0	1	0	0
LOC400759	400759	broad.mit.edu	37	1	89889957	89889957	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:89889957G>A	uc009wcy.1	+	5		c.698G>A				NR_003133				Homo sapiens cDNA, FLJ17004.												0						GATGGAGAGCGACAGGGTCCA	0.443													99	354					0	0	1	0	0
LRRC8C	84230	broad.mit.edu	37	1	90179560	90179560	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:90179560T>C	uc001dnl.3	+	3	1673	c.1431T>C	c.(1429-1431)TGT>TGC	p.C477C		NM_032270	NP_115646	Q8TDW0	LRC8C_HUMAN	leucine rich repeat containing 8 family, member	477	LRR 4.					endoplasmic reticulum membrane|integral to membrane				ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8		all_lung(203;0.126)		all cancers(265;0.00756)|Epithelial(280;0.0313)		TGCACCAGTGTTCTGTCAAAA	0.463													36	86					0	0	1	0	0
ZNF326	284695	broad.mit.edu	37	1	90493234	90493234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:90493234C>T	uc001dnq.2	+	12	1862	c.1723C>T	c.(1723-1725)CCT>TCT	p.P575S	ZNF326_uc009wda.1_Missense_Mutation_p.P486S|ZNF326_uc001dnr.2_Missense_Mutation_p.P369S	NM_182976	NP_892021	Q5BKZ1	ZN326_HUMAN	zinc finger protein 326 isoform 1	575	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	DNA binding			ovary(1)	1		all_lung(203;0.0116)|Lung NSC(277;0.0417)		all cancers(265;0.00728)|Epithelial(280;0.0265)		TGCTGACTTCCCTGTTGAGCA	0.209													26	51					0	0	1	0	0
ZNF644	84146	broad.mit.edu	37	1	91404546	91404546	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:91404546G>A	uc001dnw.2	-	3	2507	c.2365C>T	c.(2365-2367)CCT>TCT	p.P789S	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Missense_Mutation_p.P789S	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	789					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		GGCTTATGAGGGTCTGAAATA	0.358													30	76					0	0	1	0	0
ZNF644	84146	broad.mit.edu	37	1	91404608	91404608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:91404608G>A	uc001dnw.2	-	3	2445	c.2303C>T	c.(2302-2304)TCA>TTA	p.S768L	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Missense_Mutation_p.S768L	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	768					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		AGAATTTAATGAACTAGCTTC	0.328													49	78					0	0	1	0	0
BRDT	676	broad.mit.edu	37	1	92428405	92428405	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:92428405C>A	uc001dok.3	+	2	443	c.94C>A	c.(94-96)CTT>ATT	p.L32I	BRDT_uc001dol.3_Missense_Mutation_p.L32I|BRDT_uc010osz.1_Missense_Mutation_p.L32I|BRDT_uc009wdf.2_Intron|BRDT_uc010ota.1_Missense_Mutation_p.L32I|BRDT_uc010otb.1_Missense_Mutation_p.L32I|BRDT_uc001dom.3_Missense_Mutation_p.L32I	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	32					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		GACAAATCAACTTCAGTATCT	0.383													18	176					3.52763e-06	3.53344e-06	1	1	0
BRDT	676	broad.mit.edu	37	1	92470044	92470044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:92470044C>T	uc001dok.3	+	17	2811	c.2462C>T	c.(2461-2463)TCC>TTC	p.S821F	BRDT_uc001dol.3_Missense_Mutation_p.S821F|BRDT_uc010osz.1_Missense_Mutation_p.S825F|BRDT_uc009wdf.2_Missense_Mutation_p.S748F|BRDT_uc010ota.1_Missense_Mutation_p.S775F|BRDT_uc010otb.1_Missense_Mutation_p.S775F|BRDT_uc001dom.3_Missense_Mutation_p.S821F	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	821					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		GTAATGAAATCCTCAGATGAG	0.358													43	104					0	0	1	0	0
EPHX4	253152	broad.mit.edu	37	1	92511195	92511195	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:92511195C>T	uc001don.2	+	4	686	c.582C>T	c.(580-582)TTC>TTT	p.F194F		NM_173567	NP_775838	Q8IUS5	EPHX4_HUMAN	abhydrolase domain containing 7	194						integral to membrane	hydrolase activity			central_nervous_system(1)	1						TTATTAACTTCCCTCATCCAA	0.388													35	99					0	0	1	0	0
BTBD8	284697	broad.mit.edu	37	1	92568189	92568189	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:92568189G>A	uc001doo.2	+	3	774	c.507G>A	c.(505-507)GAG>GAA	p.E169E	BTBD8_uc010otc.1_RNA	NM_183242	NP_899065	Q5XKL5	BTBD8_HUMAN	BTB (POZ) domain containing 8	169						nucleus				ovary(1)	1		all_lung(203;0.0484)|Lung NSC(277;0.126)|Glioma(108;0.222)		all cancers(265;0.0153)|Epithelial(280;0.0982)		AAATTCCAGAGGATATCAGTG	0.328													33	76					0	0	1	0	0
BTBD8	284697	broad.mit.edu	37	1	92606763	92606763	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:92606763C>T	uc001doo.2	+	7	1192	c.925C>T	c.(925-927)CAG>TAG	p.Q309*	BTBD8_uc010otc.1_Intron	NM_183242	NP_899065	Q5XKL5	BTBD8_HUMAN	BTB (POZ) domain containing 8	309						nucleus				ovary(1)	1		all_lung(203;0.0484)|Lung NSC(277;0.126)|Glioma(108;0.222)		all cancers(265;0.0153)|Epithelial(280;0.0982)		TAATTTCTTTCAGAAGGTAAT	0.299													26	56					0	0	1	0	0
RPAP2	79871	broad.mit.edu	37	1	92798992	92798992	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:92798992G>A	uc001dot.2	+	9	1609	c.1500G>A	c.(1498-1500)CAG>CAA	p.Q500Q	RPAP2_uc009wdh.2_RNA	NM_024813	NP_079089	Q8IXW5	RPAP2_HUMAN	RNA polymerase II associated protein 2	500						integral to membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)	1		all_lung(203;0.0565)|Lung NSC(277;0.152)|Glioma(108;0.222)		all cancers(265;0.00647)|GBM - Glioblastoma multiforme(16;0.0234)|Epithelial(280;0.115)		CCCAGAACCAGATTAGAAAAC	0.328													14	78					0	0	1	0	0
GFI1	2672	broad.mit.edu	37	1	92946183	92946183	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:92946183G>A	uc001dou.3	-	4	925	c.761C>T	c.(760-762)TCC>TTC	p.S254F	GFI1_uc001dov.3_Missense_Mutation_p.S254F|GFI1_uc001dow.3_Missense_Mutation_p.S254F	NM_001127215	NP_001120687	Q99684	GFI1_HUMAN	growth factor independent 1	254					negative regulation of calcidiol 1-monooxygenase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1/S phase of mitotic cell cycle|transcription, DNA-dependent|viral reproduction	nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)	1		all_lung(203;0.00292)|Lung NSC(277;0.0115)|all_neural(321;0.185)|Glioma(108;0.203)		OV - Ovarian serous cystadenocarcinoma(397;9.04e-07)|Epithelial(280;1.17e-05)|all cancers(265;5.61e-05)|GBM - Glioblastoma multiforme(16;0.0191)		GCACTTGTAGGAGCCGCCGCC	0.716													6	7					0	0	1	0	0
GFI1	2672	broad.mit.edu	37	1	92948963	92948963	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:92948963G>A	uc001dou.3	-	2	246	c.82C>T	c.(82-84)CGT>TGT	p.R28C	GFI1_uc001dov.3_Missense_Mutation_p.R28C|GFI1_uc001dow.3_Missense_Mutation_p.R28C	NM_001127215	NP_001120687	Q99684	GFI1_HUMAN	growth factor independent 1	28					negative regulation of calcidiol 1-monooxygenase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1/S phase of mitotic cell cycle|transcription, DNA-dependent|viral reproduction	nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)	1		all_lung(203;0.00292)|Lung NSC(277;0.0115)|all_neural(321;0.185)|Glioma(108;0.203)		OV - Ovarian serous cystadenocarcinoma(397;9.04e-07)|Epithelial(280;1.17e-05)|all cancers(265;5.61e-05)|GBM - Glioblastoma multiforme(16;0.0191)		TTCTCTAAACGGAGGGAATAG	0.647													4	26					0	0	1	0	0
RPL5	6125	broad.mit.edu	37	1	93301949	93301949	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:93301949G>A	uc001doz.2	+	5	605	c.527G>A	c.(526-528)AGT>AAT	p.S176N	FAM69A_uc001dpc.2_Intron|RPL5_uc001dpa.2_RNA|RPL5_uc001dpb.2_Missense_Mutation_p.S126N|RPL5_uc001dpd.2_5'UTR|SNORD21_uc001dpe.2_5'Flank	NM_000969	NP_000960	P46777	RL5_HUMAN	ribosomal protein L5	176				S -> R (in Ref. 9).	endocrine pancreas development|ribosomal large subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	5S rRNA binding|protein binding|structural constituent of ribosome				0		all_lung(203;0.00265)|Lung NSC(277;0.0056)|all_neural(321;0.185)|Melanoma(281;0.192)|Glioma(108;0.203)		GBM - Glioblastoma multiforme(16;0.000305)|all cancers(265;0.000343)|Epithelial(280;0.0927)		ATCCCTCACAGGTAAGAATAC	0.438													21	54					0	0	1	0	0
BCAR3	8412	broad.mit.edu	37	1	94140254	94140254	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94140254G>A	uc001dpz.2	-	2	508	c.233C>T	c.(232-234)TCC>TTC	p.S78F	BCAR3_uc001dqa.2_Missense_Mutation_p.S78F|BCAR3_uc001dqb.2_Missense_Mutation_p.S78F	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	78					response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		CTGCCGTGGGGATTTGGAGTG	0.552													10	37					0	0	1	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94335415	94335415	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94335415G>A	uc001dqf.2	-	7	2301	c.2263C>T	c.(2263-2265)CGC>TGC	p.R755C	DNTTIP2_uc010otm.1_RNA	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	755					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		TCTTAATTGCGAAATTTCTTC	0.323													14	34					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94463552	94463552	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94463552C>T	uc001dqh.2	-	48	6698	c.6594G>A	c.(6592-6594)CAG>CAA	p.Q2198Q		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	2198	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GCCTCTCCCTCTGCACACTGC	0.567													26	40					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94481369	94481369	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94481369G>A	uc001dqh.2	-	37	5342	c.5238C>T	c.(5236-5238)TTC>TTT	p.F1746F	ABCA4_uc009wdp.1_Silent_p.F14F	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1746	Helical; (Potential).				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GAAACCCGATGAAGATGCCCA	0.403													6	27					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94502338	94502338	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94502338G>A	uc001dqh.2	-	26	3924	c.3820C>T	c.(3820-3822)CTG>TTG	p.L1274L		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1274	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GTGACCTTCAGAAAAATCTGT	0.428													24	153					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94502778	94502778	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94502778G>A	uc001dqh.2	-	25	3840	c.3736C>T	c.(3736-3738)CTT>TTT	p.L1246F		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1246	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TCTCTGAAAAGGCTGGCATAT	0.483													16	110					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94508333	94508333	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94508333G>A	uc001dqh.2	-	22	3416	c.3312C>T	c.(3310-3312)CTC>CTT	p.L1104L		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1104	Cytoplasmic.|ABC transporter 1.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GATACTTCAGGAGCAGATCCC	0.572													16	37					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94512578	94512578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94512578C>T	uc001dqh.2	-	19	2919	c.2815G>A	c.(2815-2817)GAG>AAG	p.E939K	ABCA4_uc010otn.1_Missense_Mutation_p.E865K	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	939	Cytoplasmic.|ABC transporter 1.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CCACAGGGCTCAAAAATCTTT	0.507													24	249					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94514490	94514490	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94514490C>T	uc001dqh.2	-	18	2781	c.2677G>A	c.(2677-2679)GCC>ACC	p.A893T	ABCA4_uc010otn.1_Missense_Mutation_p.A819T	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	893	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TTTTCCAGGGCTCTTTCTTCT	0.532													17	79					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94548945	94548945	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94548945C>T	uc001dqh.2	-	7	925	c.821G>A	c.(820-822)GGA>GAA	p.G274E	ABCA4_uc010otn.1_Missense_Mutation_p.G274E	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	274	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TAATATTCCTCCCCAAGATCT	0.294													19	339					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94574247	94574247	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94574247G>A	uc001dqh.2	-	4	432	c.328C>T	c.(328-330)CAA>TAA	p.Q110*	ABCA4_uc010otn.1_Nonsense_Mutation_p.Q110*	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	110	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		AGGAGTTCTTGAAAATCTCGA	0.418													24	46					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94586593	94586593	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94586593G>A	uc001dqh.2	-	1	113	c.9C>T	c.(7-9)TTC>TTT	p.F3F	ABCA4_uc010otn.1_Silent_p.F3F	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	3	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TCTGTCTCACGAAGCCCATGC	0.507													37	71					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94645345	94645345	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94645345G>A	uc001dqj.3	-	20	2785	c.2416C>T	c.(2416-2418)CTT>TTT	p.L806F	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Missense_Mutation_p.L372F	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	806	Rho-GAP.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TGTCTTAGAAGGTCTTTGCTT	0.289													35	90					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94650952	94650952	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94650952C>T	uc001dqj.3	-	17	2235	c.1866G>A	c.(1864-1866)ACG>ACA	p.T622T	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.T188T	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	622	Phorbol-ester/DAG-type.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		CCCTACATTTCGTGGGGGATC	0.398													29	95					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94650958	94650958	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94650958G>A	uc001dqj.3	-	17	2229	c.1860C>T	c.(1858-1860)TCC>TCT	p.S620S	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.S186S	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	620	Phorbol-ester/DAG-type.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		ATTTCGTGGGGGATCTCAATT	0.398													37	82					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94652133	94652133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94652133G>A	uc001dqj.3	-	16	2071	c.1702C>T	c.(1702-1704)CCA>TCA	p.P568S	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Missense_Mutation_p.P134S	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	568					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GGTGTTCGTGGAAGTTTTCGA	0.373													68	138					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94668201	94668201	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94668201G>A	uc001dqj.3	-	11	1411	c.1042C>T	c.(1042-1044)CGT>TGT	p.R348C	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.R348C	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	348	Potential.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TCTTCTGCACGAAACATGGAA	0.408													54	141					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94670698	94670698	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94670698C>T	uc001dqj.3	-	7	985	c.616G>A	c.(616-618)GAG>AAG	p.E206K	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.E206K	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	206					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		AAAGCCAGCTCGATAGAGTCA	0.338													14	53					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94671197	94671197	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94671197C>T	uc001dqj.3	-	6	922	c.553G>A	c.(553-555)GAA>AAA	p.E185K	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.E185K	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	185					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TTACCTTTTTCACTGGATGAG	0.323													38	98					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94674868	94674868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94674868C>T	uc001dqj.3	-	4	748	c.379G>A	c.(379-381)GAT>AAT	p.D127N	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.D127N	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	127					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TGGAAGAGATCGTTTTTGTTT	0.323													13	47					0	0	1	0	0
ABCD3	5825	broad.mit.edu	37	1	94964161	94964161	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:94964161C>T	uc001dqn.3	+	17	1492	c.1390C>T	c.(1390-1392)CGA>TGA	p.R464*	ABCD3_uc010oto.1_Nonsense_Mutation_p.R488*|ABCD3_uc010otp.1_Nonsense_Mutation_p.R391*|ABCD3_uc009wdr.2_Nonsense_Mutation_p.R354*|ABCD3_uc001dqo.3_Nonsense_Mutation_p.R152*	NM_002858	NP_002849	P28288	ABCD3_HUMAN	ATP-binding cassette, sub-family D, member 3	464	ABC transporter.				peroxisomal long-chain fatty acid import|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(1)	1		all_lung(203;0.000434)|Lung NSC(277;0.0019)		all cancers(265;0.0261)|Epithelial(280;0.165)		TTTTCAGGTTCGATCTGGGGC	0.338													12	59					0	0	1	0	0
SLC44A3	126969	broad.mit.edu	37	1	95290159	95290159	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:95290159C>T	uc001dqv.3	+	3	353	c.246C>T	c.(244-246)GCC>GCT	p.A82A	SLC44A3_uc001dqx.3_Silent_p.A82A|SLC44A3_uc010otq.1_Silent_p.A46A|SLC44A3_uc010otr.1_Silent_p.A46A|SLC44A3_uc001dqw.3_Silent_p.A34A|SLC44A3_uc010ots.1_Silent_p.A34A|SLC44A3_uc009wds.2_5'UTR|SLC44A3_uc010ott.1_Silent_p.A34A|SLC44A3_uc010otu.1_5'Flank	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	82						integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	TGGAAGGGGCCCCTCTTTCAG	0.488													19	124					0	0	1	0	0
SLC44A3	126969	broad.mit.edu	37	1	95307561	95307561	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:95307561T>G	uc001dqv.3	+	8	873	c.766T>G	c.(766-768)TGC>GGC	p.C256G	SLC44A3_uc001dqx.3_Missense_Mutation_p.C256G|SLC44A3_uc010otq.1_Missense_Mutation_p.C188G|SLC44A3_uc010otr.1_Missense_Mutation_p.C220G|SLC44A3_uc001dqw.3_Missense_Mutation_p.C208G|SLC44A3_uc010ots.1_Missense_Mutation_p.C176G|SLC44A3_uc009wds.2_Missense_Mutation_p.C159G|SLC44A3_uc010ott.1_Missense_Mutation_p.C176G|SLC44A3_uc010otu.1_RNA	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	256	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	TCTAGTTGTCTGCGGTGTTTT	0.483													70	235					0	0	1	0	0
CNN3	1266	broad.mit.edu	37	1	95363566	95363566	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:95363566G>A	uc010otw.1	-	8	804	c.722C>T	c.(721-723)TCG>TTG	p.S241L	CNN3_uc010otv.1_Missense_Mutation_p.S200L|CNN3_uc001dqz.3_Missense_Mutation_p.S241L|CNN3_uc010otx.1_Missense_Mutation_p.S195L	NM_001839	NP_001830	Q15417	CNN3_HUMAN	calponin 3	241					actomyosin structure organization|smooth muscle contraction		actin binding|calmodulin binding|tropomyosin binding|troponin C binding				0		all_lung(203;0.00206)|Lung NSC(277;0.00948)		all cancers(265;0.0325)|Epithelial(280;0.0861)		GGAAATTGTCGAGTTGTCCAC	0.443													45	126					0	0	1	0	0
CNN3	1266	broad.mit.edu	37	1	95368697	95368697	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:95368697G>A	uc010otw.1	-	4	309	c.227C>T	c.(226-228)TCC>TTC	p.S76F	CNN3_uc010otv.1_Missense_Mutation_p.S35F|CNN3_uc001dqz.3_Missense_Mutation_p.S76F|CNN3_uc010otx.1_Missense_Mutation_p.S76F	NM_001839	NP_001830	Q15417	CNN3_HUMAN	calponin 3	76	CH.				actomyosin structure organization|smooth muscle contraction		actin binding|calmodulin binding|tropomyosin binding|troponin C binding				0		all_lung(203;0.00206)|Lung NSC(277;0.00948)		all cancers(265;0.0325)|Epithelial(280;0.0861)		GTTCAGTGAGGACTCGTTGAC	0.403													25	47					0	0	1	0	0
TMEM56	148534	broad.mit.edu	37	1	95657146	95657146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:95657146G>A	uc001drb.2	+	7	805	c.514G>A	c.(514-516)GCT>ACT	p.A172T	RWDD3_uc001drd.3_Intron|uc001dre.1_Intron|TMEM56_uc001drc.2_Missense_Mutation_p.A172T	NM_152487	NP_689700	Q96MV1	TMM56_HUMAN	transmembrane protein 56	172	TLC.					integral to membrane					0		all_lung(203;0.0232)|Lung NSC(277;0.0739)		all cancers(265;0.133)		GTTTTCTAAAGCTATCGTTAT	0.368													51	123					0	0	1	0	0
PTBP2	58155	broad.mit.edu	37	1	97236339	97236339	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:97236339C>T	uc001drq.2	+	5	610	c.364C>T	c.(364-366)CGT>TGT	p.R122C	PTBP2_uc001drn.2_Missense_Mutation_p.R122C|PTBP2_uc001dro.2_Missense_Mutation_p.R122C|PTBP2_uc010otz.1_Missense_Mutation_p.R133C|PTBP2_uc001drp.2_RNA|PTBP2_uc009wdw.2_Missense_Mutation_p.R70C|PTBP2_uc001drr.2_Missense_Mutation_p.R122C|PTBP2_uc010oua.1_Missense_Mutation_p.R130C|PTBP2_uc001dru.2_RNA|PTBP2_uc001drm.2_Missense_Mutation_p.R122C	NM_021190	NP_067013	Q9UKA9	PTBP2_HUMAN	polypyrimidine tract binding protein 2	122	RRM 1.						nucleotide binding				0		all_epithelial(167;2.95e-05)|all_lung(203;0.000396)|Lung NSC(277;0.00171)		all cancers(265;0.0582)|Epithelial(280;0.0716)|Colorectal(170;0.0879)|KIRC - Kidney renal clear cell carcinoma(1967;0.202)		ACCTCATCTTCGTAACCAACC	0.338													20	115					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	97547984	97547984	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:97547984C>T	uc001drv.2	-	22	2946	c.2809G>A	c.(2809-2811)GAA>AAA	p.E937K		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	937					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTGCTCAATTCACCAAATGTT	0.363													34	144					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	97658696	97658696	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:97658696C>T	uc001drv.2	-	20	2688	c.2551G>A	c.(2551-2553)GGA>AGA	p.G851R		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	851					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GGACTCTGTCCATCCCAGTCT	0.448													32	62					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	98039469	98039469	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:98039469C>T	uc001drv.2	-	11	1323	c.1186G>A	c.(1186-1188)GTT>ATT	p.V396I		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	396					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTTACTATAACCTTCCGTGGG	0.388													24	74					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	98058822	98058822	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:98058822G>A	uc001drv.2	-	10	1217	c.1080C>T	c.(1078-1080)TTC>TTT	p.F360F		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	360					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TGAAGACGATGAACACACGGC	0.458													44	132					0	0	1	0	0
PALMD	54873	broad.mit.edu	37	1	100154749	100154749	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:100154749G>A	uc001dsg.2	+	7	1376	c.933G>A	c.(931-933)GAG>GAA	p.E311E	PALMD_uc001dsf.2_Silent_p.E311E	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	311					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		GTCTTTCAGAGGAAAGGGGAA	0.443													15	83					0	0	1	0	0
PALMD	54873	broad.mit.edu	37	1	100155173	100155173	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:100155173G>A	uc001dsg.2	+	7	1800	c.1357G>A	c.(1357-1359)GAG>AAG	p.E453K	PALMD_uc001dsf.2_Missense_Mutation_p.E453K	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	453	Poly-Glu.				regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		TGAGGAGGAGGAGGATGAAGG	0.483													21	59					0	0	1	0	0
PALMD	54873	broad.mit.edu	37	1	100155313	100155313	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:100155313C>T	uc001dsg.2	+	7	1940	c.1497C>T	c.(1495-1497)CCC>CCT	p.P499P	PALMD_uc001dsf.2_Silent_p.P499P	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	499					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		ATAAATCCCCCCACAAAAATT	0.463													23	59					0	0	1	0	0
PALMD	54873	broad.mit.edu	37	1	100155362	100155362	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:100155362C>T	uc001dsg.2	+	7	1989	c.1546C>T	c.(1546-1548)CCT>TCT	p.P516S	PALMD_uc001dsf.2_Missense_Mutation_p.P516S	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	516					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		CTTAGGCAGCCCTGTCCACCA	0.428													25	68					0	0	1	0	0
FRRS1	391059	broad.mit.edu	37	1	100182983	100182983	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:100182983C>T	uc001dsh.1	-	11	1821	c.1219G>A	c.(1219-1221)GAA>AAA	p.E407K		NM_001013660	NP_001013682	Q6ZNA5	FRRS1_HUMAN	stromal cell derived factor receptor 2 homolog	407	Cytochrome b561.				electron transport chain|transport	integral to membrane	ferric-chelate reductase activity|metal ion binding			skin(1)	1		all_epithelial(167;2.09e-06)|all_lung(203;0.000435)|Lung NSC(277;0.00201)		Epithelial(280;0.0718)|all cancers(265;0.126)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.206)		CAAGCTGCTTCACCAAGCAAG	0.403													42	126					0	0	1	0	0
AGL	178	broad.mit.edu	37	1	100330033	100330034	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:100330033_100330034CT>TC	uc001dsi.1	+	5	952_953	c.552_553CT>TC	c.(550-555)GACTTT>GATCTT	p.F185L	AGL_uc001dsj.1_Missense_Mutation_p.F185L|AGL_uc001dsk.1_Missense_Mutation_p.F185L|AGL_uc001dsl.1_Missense_Mutation_p.F185L|AGL_uc001dsm.1_Missense_Mutation_p.F169L|AGL_uc001dsn.1_Missense_Mutation_p.F168L	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	185	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TAAATCCTGACTTTTCAAGACC	0.366													28	115					0	0	1	0	0
LRRC39	127495	broad.mit.edu	37	1	100620727	100620727	+	Missense_Mutation	SNP	C	T	T	rs142389687	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:100620727C>T	uc001dsw.1	-	8	891	c.692G>A	c.(691-693)CGA>CAA	p.R231Q	LRRC39_uc001dsx.1_Missense_Mutation_p.R231Q|LRRC39_uc001dsy.1_Missense_Mutation_p.R231Q|LRRC39_uc001dsz.1_Missense_Mutation_p.R231Q	NM_144620	NP_653221	Q96DD0	LRC39_HUMAN	leucine rich repeat containing 39	231	LRR 7.									ovary(2)|skin(1)	3		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0826)|all cancers(265;0.135)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.195)		TATTTCATTTCGTTGCAGCCA	0.308													9	68					0	0	1	0	0
DBT	1629	broad.mit.edu	37	1	100672014	100672014	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:100672014G>A	uc001dta.2	-	9	1229	c.1196C>T	c.(1195-1197)TCC>TTC	p.S399F	DBT_uc010oug.1_Missense_Mutation_p.S218F	NM_001918	NP_001909	P11182	ODB2_HUMAN	dihydrolipoamide branched chain transacylase	399					branched chain family amino acid catabolic process|fatty-acyl-CoA biosynthetic process	microtubule cytoskeleton|mitochondrial alpha-ketoglutarate dehydrogenase complex|mitochondrial nucleoid	acyltransferase activity|cofactor binding|dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity|protein binding			pancreas(1)	1		all_epithelial(167;5.4e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0739)|all cancers(265;0.123)|COAD - Colon adenocarcinoma(174;0.154)|Lung(183;0.199)		TCCAATGTTGGAAAGAGTAAA	0.373													55	159					0	0	1	0	0
VCAM1	7412	broad.mit.edu	37	1	101190431	101190431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:101190431G>A	uc001dti.2	+	4	1033	c.913G>A	c.(913-915)GAA>AAA	p.E305K	VCAM1_uc001dtj.2_Missense_Mutation_p.E305K|VCAM1_uc010ouj.1_Missense_Mutation_p.E243K	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	305	Ig-like C2-type 3.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	AAAAGAGGTGGAATTAATTGT	0.373													10	62					0	0	1	0	0
VCAM1	7412	broad.mit.edu	37	1	101194818	101194818	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:101194818G>A	uc001dti.2	+	5	1204	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	VCAM1_uc001dtj.2_Intron|VCAM1_uc010ouj.1_Missense_Mutation_p.E300K	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	362	Ig-like C2-type 4.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	GGTGAGGAGTGAGGGGACCAA	0.507													56	125					0	0	1	0	0
VCAM1	7412	broad.mit.edu	37	1	101198189	101198189	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:101198189G>A	uc001dti.2	+	7	1861	c.1741G>A	c.(1741-1743)GGA>AGA	p.G581R	VCAM1_uc001dtj.2_Missense_Mutation_p.G489R|VCAM1_uc010ouj.1_Missense_Mutation_p.G519R	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	581	Ig-like C2-type 6.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	TTTATGTGAAGGAATTAACCA	0.413													55	137					0	0	1	0	0
S1PR1	1901	broad.mit.edu	37	1	101705578	101705578	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:101705578C>T	uc001dud.2	+	2	1552	c.1038C>T	c.(1036-1038)GCC>GCT	p.A346A	S1PR1_uc009weg.2_Silent_p.A346A	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	346	Cytoplasmic (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						CCATCATCGCCGGCATGGAAT	0.552													10	184					0	0	1	0	0
S1PR1	1901	broad.mit.edu	37	1	101705633	101705633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:101705633G>A	uc001dud.2	+	2	1607	c.1093G>A	c.(1093-1095)GAA>AAA	p.E365K	S1PR1_uc009weg.2_Missense_Mutation_p.E365K	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	365	Cytoplasmic (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						CCAGAAAGACGAAGGGGACAA	0.547													30	81					0	0	1	0	0
OLFM3	118427	broad.mit.edu	37	1	102270432	102270432	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:102270432G>A	uc001duf.2	-	6	870	c.799C>T	c.(799-801)CGT>TGT	p.R267C	OLFM3_uc001dug.2_Missense_Mutation_p.R247C|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Missense_Mutation_p.R172C|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	267	Olfactomedin-like.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		TTGTATTCACGAACAATTTTA	0.378													30	68					0	0	1	0	0
OLFM3	118427	broad.mit.edu	37	1	102290667	102290667	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:102290667C>T	uc001duf.2	-	4	638	c.567G>A	c.(565-567)GAG>GAA	p.E189E	OLFM3_uc001dug.2_Silent_p.E169E|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Silent_p.E94E|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	189	Potential.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		CACCAATTTCCTCCTGAATAC	0.438													9	52					0	0	1	0	0
OLFM3	118427	broad.mit.edu	37	1	102302440	102302440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:102302440C>T	uc001duf.2	-	2	342	c.271G>A	c.(271-273)GAA>AAA	p.E91K	OLFM3_uc001dug.2_Missense_Mutation_p.E71K|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_5'UTR|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	91	Potential.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		CCTACCTTTTCCAGTAGTTGG	0.448													53	101					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103343647	103343647	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103343647G>A	uc001dul.2	-	67	5667	c.5349C>T	c.(5347-5349)GTC>GTT	p.V1783V	COL11A1_uc001duk.2_Silent_p.V979V|COL11A1_uc001dum.2_Silent_p.V1795V|COL11A1_uc001dun.2_Silent_p.V1744V|COL11A1_uc009weh.2_Silent_p.V1667V	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1783	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CATTGATCATGACATCAACAA	0.323													35	62					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103352543	103352543	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103352543C>T	uc001dul.2	-	63	4996	c.4678G>A	c.(4678-4680)GGC>AGC	p.G1560S	COL11A1_uc001duk.2_Missense_Mutation_p.G756S|COL11A1_uc001dum.2_Missense_Mutation_p.G1572S|COL11A1_uc001dun.2_Missense_Mutation_p.G1521S|COL11A1_uc009weh.2_Missense_Mutation_p.G1444S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1560	Nonhelical region (C-terminal).				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GCTTGCATGCCTTCAGTATGT	0.393													48	127					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103377716	103377716	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103377716C>T	uc001dul.2	-	54	4403	c.4085G>A	c.(4084-4086)CGA>CAA	p.R1362Q	COL11A1_uc001duk.2_Missense_Mutation_p.R558Q|COL11A1_uc001dum.2_Missense_Mutation_p.R1374Q|COL11A1_uc001dun.2_Missense_Mutation_p.R1323Q|COL11A1_uc009weh.2_Missense_Mutation_p.R1246Q	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1362	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GAAACTTACTCGTTTTCCAGG	0.363													8	23					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103400011	103400012	+	Missense_Mutation	DNP	AC	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103400011_103400012AC>TA	uc001dul.2	-	46	3911_3912	c.3593_3594GT>TA	c.(3592-3594)GGT>GTA	p.G1198V	COL11A1_uc001duk.2_Missense_Mutation_p.G394V|COL11A1_uc001dum.2_Missense_Mutation_p.G1210V|COL11A1_uc001dun.2_Missense_Mutation_p.G1159V|COL11A1_uc009weh.2_Missense_Mutation_p.G1082V	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1198	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTACCTGAAGACCTATTGGACC	0.455													15	66					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103427784	103427784	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103427784C>T	uc001dul.2	-	40	3380	c.3062G>A	c.(3061-3063)GGA>GAA	p.G1021E	COL11A1_uc001duk.2_Missense_Mutation_p.G217E|COL11A1_uc001dum.2_Missense_Mutation_p.G1033E|COL11A1_uc001dun.2_Missense_Mutation_p.G982E|COL11A1_uc009weh.2_Missense_Mutation_p.G905E	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1021	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TCCTGCTGGTCCATCTTTCCC	0.378													18	103					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103427792	103427792	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103427792C>T	uc001dul.2	-	40	3372	c.3054G>A	c.(3052-3054)GGG>GGA	p.G1018G	COL11A1_uc001duk.2_Silent_p.G214G|COL11A1_uc001dum.2_Silent_p.G1030G|COL11A1_uc001dun.2_Silent_p.G979G|COL11A1_uc009weh.2_Silent_p.G902G	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1018	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GTCCATCTTTCCCTGAGATAC	0.383													41	77					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103444967	103444967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103444967G>A	uc001dul.2	-	32	2899	c.2581C>T	c.(2581-2583)CCA>TCA	p.P861S	COL11A1_uc001duk.2_Missense_Mutation_p.P57S|COL11A1_uc001dum.2_Missense_Mutation_p.P873S|COL11A1_uc001dun.2_Missense_Mutation_p.P822S|COL11A1_uc009weh.2_Missense_Mutation_p.P745S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	861	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTGGCACCTGGAAACCCAGGG	0.284													17	37					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103471420	103471421	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103471420_103471421CC>TT	uc001dul.2	-	18	2136_2137	c.1818_1819GG>AA	c.(1816-1821)CCGGGT>CCAAGT	p.G607S	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.G619S|COL11A1_uc001dun.2_Missense_Mutation_p.G568S|COL11A1_uc009weh.2_Missense_Mutation_p.G491S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	607	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CCTGGCAGACCCGGAAGTCCAT	0.307													23	123					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103474059	103474059	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103474059G>A	uc001dul.2	-	15	1961	c.1643C>T	c.(1642-1644)TCA>TTA	p.S548L	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.S560L|COL11A1_uc001dun.2_Missense_Mutation_p.S509L|COL11A1_uc009weh.2_Missense_Mutation_p.S432L	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	548	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GGCCCCAGATGAACCAGGCCC	0.299													44	81					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103488537	103488537	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103488537C>T	uc001dul.2	-	8	1324	c.1006G>A	c.(1006-1008)GAA>AAA	p.E336K	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.E348K|COL11A1_uc001dun.2_Missense_Mutation_p.E297K|COL11A1_uc009weh.2_Intron	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	336	Nonhelical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GTAAATATTTCTTCAACTGGA	0.318													12	36					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103573705	103573705	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:103573705C>T	uc001dul.2	-	1	348	c.30G>A	c.(28-30)ACG>ACA	p.T10T	COL11A1_uc001dum.2_Silent_p.T10T|COL11A1_uc001dun.2_Silent_p.T10T|COL11A1_uc009weh.2_Silent_p.T10T	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	10					collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GCCACCGTTTCGTTTTCCACC	0.522													18	43					0	0	1	0	0
AMY2A	279	broad.mit.edu	37	1	104160591	104160591	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:104160591G>A	uc001dut.2	+	2	248	c.184G>A	c.(184-186)GAA>AAA	p.E62K	AMY2A_uc010ouq.1_Missense_Mutation_p.E62K	NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	62					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	TCCACCAAATGAAAATGTTGC	0.328													39	170					0	0	1	0	0
NTNG1	22854	broad.mit.edu	37	1	107979316	107979316	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:107979316C>T	uc001dvh.3	+	7	2003	c.1285C>T	c.(1285-1287)CAT>TAT	p.H429Y	NTNG1_uc001dvf.3_Intron|NTNG1_uc010out.1_Missense_Mutation_p.H395Y|NTNG1_uc001dvc.3_Intron|NTNG1_uc001dvi.2_5'UTR|NTNG1_uc001dve.2_RNA|NTNG1_uc009wek.2_RNA|NTNG1_uc001dvg.2_Intron|NTNG1_uc009wem.2_Intron	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	429	Laminin EGF-like 3.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		GGGCTCAATCCATGATCGTTG	0.478													16	31					0	0	1	0	0
VAV3	10451	broad.mit.edu	37	1	108313328	108313328	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:108313328C>T	uc001dvk.1	-	6	632	c.578G>A	c.(577-579)CGA>CAA	p.R193Q	VAV3_uc010ouw.1_Missense_Mutation_p.R193Q|VAV3_uc001dvl.1_Missense_Mutation_p.R17Q|VAV3_uc010oux.1_Missense_Mutation_p.R193Q	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	193	DH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		ACAACAACTTCGTATATCATT	0.299													30	132					0	0	1	0	0
FNDC7	163479	broad.mit.edu	37	1	109271289	109271289	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109271289G>A	uc001dvx.2	+	8	1405	c.1405G>A	c.(1405-1407)GAT>AAT	p.D469N	FNDC7_uc010ova.1_Missense_Mutation_p.D236N	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	470	Fibronectin type-III 6.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		TGTTTCAAGGGATGCATTCTC	0.418													20	53					0	0	1	0	0
FNDC7	163479	broad.mit.edu	37	1	109271457	109271457	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109271457G>A	uc001dvx.2	+	8	1573	c.1573G>A	c.(1573-1575)GAA>AAA	p.E525K	FNDC7_uc010ova.1_Missense_Mutation_p.E292K	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	526	Fibronectin type-III 6.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		TGCTGTGGCCGAAACACAGGC	0.577													24	52					0	0	1	0	0
FNDC7	163479	broad.mit.edu	37	1	109284406	109284406	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109284406G>A	uc001dvx.2	+	12	2182	c.2182G>A	c.(2182-2184)GGG>AGG	p.G728R	FNDC7_uc010ova.1_Missense_Mutation_p.G485R	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	729						extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		GATTTATAGAGGGAAGAGAAA	0.348													13	44					0	0	1	0	0
STXBP3	6814	broad.mit.edu	37	1	109302685	109302685	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109302685C>T	uc001dvy.2	+	6	491	c.416C>T	c.(415-417)TCC>TTC	p.S139F	STXBP3_uc001dvz.2_RNA	NM_007269	NP_009200	O00186	STXB3_HUMAN	syntaxin binding protein 3	139	Mediates interaction with DOC2B (By similarity).				negative regulation of calcium ion-dependent exocytosis|neutrophil degranulation|platelet aggregation|protein transport|vesicle docking involved in exocytosis	cytosol|nucleus|platelet alpha granule|specific granule|tertiary granule	syntaxin-2 binding			ovary(3)|central_nervous_system(1)	4		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0386)|Lung(183;0.104)|COAD - Colon adenocarcinoma(174;0.137)|Epithelial(280;0.231)		ATAAATATTTCCTTCATTCCA	0.289													55	148					0	0	1	0	0
AKNAD1	254268	broad.mit.edu	37	1	109377600	109377600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109377600C>T	uc001dwa.2	-	8	1884	c.1615G>A	c.(1615-1617)GGG>AGG	p.G539R	AKNAD1_uc010ovb.1_Missense_Mutation_p.G246R|AKNAD1_uc001dwb.2_Intron	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	539										ovary(3)	3						TCCTGCGGCCCTCCTTGGGGT	0.657													27	68					0	0	1	0	0
WDR47	22911	broad.mit.edu	37	1	109529264	109529264	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109529264G>A	uc001dwj.2	-	10	2182	c.1806C>T	c.(1804-1806)ATC>ATT	p.I602I	WDR47_uc001dwl.2_Silent_p.I610I|WDR47_uc001dwi.2_Silent_p.I603I|WDR47_uc001dwk.2_Silent_p.I574I|WDR47_uc010ovf.1_Silent_p.I529I	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	602										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		TGTCTTCTAGGATATTAATAC	0.323													20	43					0	0	1	0	0
WDR47	22911	broad.mit.edu	37	1	109538218	109538218	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109538218G>A	uc001dwj.2	-	8	2051	c.1675C>T	c.(1675-1677)CCT>TCT	p.P559S	WDR47_uc001dwl.2_Missense_Mutation_p.P567S|WDR47_uc001dwi.2_Missense_Mutation_p.P560S|WDR47_uc001dwk.2_Missense_Mutation_p.P531S|WDR47_uc010ovf.1_Missense_Mutation_p.P486S	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	559										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		CTTCCACAAGGTGATTCCTCC	0.363													74	225					0	0	1	0	0
C1orf194	127003	broad.mit.edu	37	1	109649166	109649166	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109649166C>T	uc009wev.2	-	4	498	c.430G>A	c.(430-432)GGA>AGA	p.G144R	C1orf194_uc001dwp.3_RNA|C1orf194_uc009wew.2_Missense_Mutation_p.G132R	NM_001122961	NP_001116433	Q5T5A4	CA194_HUMAN	hypothetical protein LOC127003	144										ovary(1)	1						CCTATGGATCCTTGGATGCTG	0.493													104	278					0	0	1	0	0
KIAA1324	57535	broad.mit.edu	37	1	109730818	109730818	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109730818G>A	uc001dwq.2	+	10	1197	c.1061G>A	c.(1060-1062)TGG>TAG	p.W354*	KIAA1324_uc009wex.1_Nonsense_Mutation_p.W304*|KIAA1324_uc009wey.2_Nonsense_Mutation_p.W267*|KIAA1324_uc010ovg.1_Nonsense_Mutation_p.W252*|KIAA1324_uc001dwr.2_Nonsense_Mutation_p.W4*	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	354	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		ATGTACAAATGGGCCAAGCCG	0.532													33	90					0	0	1	0	0
KIAA1324	57535	broad.mit.edu	37	1	109740600	109740600	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109740600G>A	uc001dwq.2	+	18	2439	c.2303_splice	c.e18-1	p.G768_splice	KIAA1324_uc009wex.1_Splice_Site_p.G718_splice|KIAA1324_uc009wey.2_Splice_Site_p.G681_splice|KIAA1324_uc010ovg.1_Splice_Site_p.G666_splice|KIAA1324_uc001dwr.2_Splice_Site_p.G418_splice|KIAA1324_uc001dws.1_Intron|KIAA1324_uc009wez.1_Intron	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor						macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		TAATTTGGCAGGGGTGACAAC	0.453													26	63					0	0	1	0	0
CELSR2	1952	broad.mit.edu	37	1	109801498	109801498	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109801498C>T	uc001dxa.3	+	2	3816	c.3755C>T	c.(3754-3756)TCC>TTC	p.S1252F		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	1252	EGF-like 1; calcium-binding.|Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TTCGACTCCTCCGCGCCCTTC	0.687													4	21					0	0	1	0	0
MYBPHL	343263	broad.mit.edu	37	1	109840226	109840226	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109840226G>A	uc001dxk.1	-	3	298	c.248C>T	c.(247-249)CCT>CTT	p.P83L	MYBPHL_uc010ovh.1_Missense_Mutation_p.P83L|MYBPHL_uc001dxl.2_Intron	NM_001010985	NP_001010985	A2RUH7	MBPHL_HUMAN	myosin binding protein H-like	83	Ig-like C2-type 1.									ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(203;0.00519)|all_epithelial(167;0.00575)|Lung NSC(277;0.00822)		Colorectal(144;0.0306)|Lung(183;0.0681)|COAD - Colon adenocarcinoma(174;0.117)|Epithelial(280;0.197)|all cancers(265;0.225)		GATGGCTTGAGGTTTGGGCTT	0.587													16	36					0	0	1	0	0
MYBPHL	343263	broad.mit.edu	37	1	109840830	109840831	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:109840830_109840831CC>GT	uc001dxk.1	-	2	244_245	c.194_195GG>AC	c.(193-195)CGG>CAC	p.R65H	MYBPHL_uc010ovh.1_Missense_Mutation_p.R65H|MYBPHL_uc001dxl.2_Intron	NM_001010985	NP_001010985	A2RUH7	MBPHL_HUMAN	myosin binding protein H-like	65	Ig-like C2-type 1.									ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(203;0.00519)|all_epithelial(167;0.00575)|Lung NSC(277;0.00822)		Colorectal(144;0.0306)|Lung(183;0.0681)|COAD - Colon adenocarcinoma(174;0.117)|Epithelial(280;0.197)|all cancers(265;0.225)		CCCCAACCTTCCGGATGTAGGT	0.52													24	126					0	0	1	0	0
SYPL2	284612	broad.mit.edu	37	1	110018217	110018217	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110018217C>T	uc001dxp.2	+	3	510	c.144C>T	c.(142-144)TTC>TTT	p.F48F	SYPL2_uc001dxo.2_Silent_p.F48F|SYPL2_uc010ovk.1_Silent_p.F48F|SYPL2_uc001dxq.2_5'Flank	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	48	Helical; (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		TTGCTATTTTCGCCTTCGGGT	0.547													20	57					0	0	1	0	0
SYPL2	284612	broad.mit.edu	37	1	110018223	110018223	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110018223C>T	uc001dxp.2	+	3	516	c.150C>T	c.(148-150)TTC>TTT	p.F50F	SYPL2_uc001dxo.2_Silent_p.F50F|SYPL2_uc010ovk.1_Silent_p.F50F|SYPL2_uc001dxq.2_5'Flank	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	50	Helical; (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		TTTTCGCCTTCGGGTCCTGTG	0.547													13	64					0	0	1	0	0
SYPL2	284612	broad.mit.edu	37	1	110019517	110019517	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110019517C>T	uc001dxp.2	+	4	740	c.374C>T	c.(373-375)TCC>TTC	p.S125F	SYPL2_uc001dxo.2_Missense_Mutation_p.S125F|SYPL2_uc010ovk.1_Missense_Mutation_p.S125F|SYPL2_uc001dxq.2_Missense_Mutation_p.S33F	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	125	Helical; (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		GGCATCTTTTCCTTCTTCTAT	0.552													28	61					0	0	1	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110029765	110029765	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110029765C>T	uc001dxr.2	+	4	450	c.435C>T	c.(433-435)TCC>TCT	p.S145S	ATXN7L2_uc001dxs.2_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	145										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		CGAAAACCTCCTCCAGGGAGA	0.622													3	18					0	0	1	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110032729	110032729	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110032729C>T	uc001dxr.2	+	8	1230	c.1215C>T	c.(1213-1215)ACC>ACT	p.T405T	ATXN7L2_uc001dxs.2_Silent_p.T32T|ATXN7L2_uc001dxt.2_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	405										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		ATTATGCAACCCGGCCCCCAC	0.662													22	65					0	0	1	0	0
CYB561D1	284613	broad.mit.edu	37	1	110038505	110038505	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110038505C>T	uc010ovn.1	+	3	375	c.314C>T	c.(313-315)GCT>GTT	p.A105V	CYB561D1_uc010ovl.1_Missense_Mutation_p.A48V|CYB561D1_uc010ovm.1_Missense_Mutation_p.A47V|CYB561D1_uc001dxu.2_3'UTR|CYB561D1_uc001dxw.2_3'UTR|CYB561D1_uc010ovo.1_Missense_Mutation_p.A127V|CYB561D1_uc009wfd.2_Missense_Mutation_p.A54V|CYB561D1_uc010ovp.1_Missense_Mutation_p.A39V	NM_182580	NP_872386	Q8N8Q1	C56D1_HUMAN	cytochrome b-561 domain containing 1 isoform 2	105	Cytochrome b561.|Helical; (Potential).				electron transport chain|transport	integral to membrane	metal ion binding				0		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0422)|Epithelial(280;0.0655)|all cancers(265;0.0685)|READ - Rectum adenocarcinoma(129;0.0689)|LUSC - Lung squamous cell carcinoma(189;0.227)		CTCTGTGCAGCTCTGGGCCTG	0.612													57	131					0	0	1	0	0
AMIGO1	57463	broad.mit.edu	37	1	110051073	110051073	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110051073G>A	uc001dxx.3	-	2	844	c.462C>T	c.(460-462)TTC>TTT	p.F154F		NM_020703	NP_065754	Q86WK6	AMGO1_HUMAN	AMIGO protein precursor	154	LRR 4.|Extracellular (Potential).				axonal fasciculation|heterophilic cell-cell adhesion|homophilic cell adhesion|myelination|positive regulation of axonogenesis	axon|integral to membrane				ovary(1)|breast(1)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0182)|Epithelial(280;0.046)|all cancers(265;0.0492)|READ - Rectum adenocarcinoma(129;0.0689)|LUSC - Lung squamous cell carcinoma(189;0.227)		CCATGTCATCGAAGGCGCACC	0.537													36	109					0	0	1	0	0
GNAT2	2780	broad.mit.edu	37	1	110148694	110148694	+	Silent	SNP	G	T	T	rs140231308		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110148694G>T	uc001dya.2	-	6	831	c.618C>A	c.(616-618)TCC>TCA	p.S206S		NM_005272	NP_005263	P19087	GNAT2_HUMAN	guanine nucleotide binding protein, alpha	206					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	G-protein beta/gamma-subunit complex binding|G-protein coupled photoreceptor activity|G-protein-coupled receptor binding|GTP binding|GTPase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0422)|Colorectal(144;0.108)|Epithelial(280;0.125)|all cancers(265;0.129)|LUSC - Lung squamous cell carcinoma(189;0.227)		TCTTTCTCTCGGATCTCTGCC	0.502													30	63					1.61788e-16	1.62548e-16	1	1	0
AMPD2	271	broad.mit.edu	37	1	110163726	110163726	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110163726T>C	uc009wfh.1	+	2	633	c.91T>C	c.(91-93)TTG>CTG	p.L31L	AMPD2_uc009wfg.1_Intron|AMPD2_uc001dyb.1_Intron|AMPD2_uc001dyc.1_Silent_p.L31L|AMPD2_uc010ovr.1_5'UTR|AMPD2_uc010ovs.1_5'Flank	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	31					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		GAGGAAGGGGTTGGATGTGGC	0.672													4	16					0	0	1	0	0
AMPD2	271	broad.mit.edu	37	1	110168355	110168355	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110168355C>T	uc009wfh.1	+	4	998	c.456C>T	c.(454-456)CCC>CCT	p.P152P	AMPD2_uc009wfg.1_RNA|AMPD2_uc001dyb.1_Silent_p.P71P|AMPD2_uc001dyc.1_Silent_p.P152P|AMPD2_uc010ovr.1_Silent_p.P77P|AMPD2_uc010ovs.1_Silent_p.P34P|AMPD2_uc001dyd.1_Silent_p.P33P	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	152					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		AGGAGAGCCCCATTGAACAGC	0.642													20	71					0	0	1	0	0
GSTM1	2944	broad.mit.edu	37	1	110230845	110230845	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110230845A>T	uc001dyk.2	+	2	168	c.90A>T	c.(88-90)GAA>GAT	p.E30D	GSTM1_uc001dyl.2_Missense_Mutation_p.E30D	NM_000561	NP_000552	P09488	GSTM1_HUMAN	glutathione S-transferase mu 1 isoform 1	30	GST N-terminal.				xenobiotic metabolic process	cytosol	glutathione transferase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		all cancers(265;0.0122)|Colorectal(144;0.0129)|Epithelial(280;0.0146)|Lung(183;0.0422)|COAD - Colon adenocarcinoma(174;0.047)|LUSC - Lung squamous cell carcinoma(189;0.227)	Glutathione(DB00143)	GCTATGAGGAAAAGAAGTACA	0.607									Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				72	56					0	0	1	0	0
GSTM5	2949	broad.mit.edu	37	1	110254965	110254965	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110254965C>T	uc001dyn.2	+	1	102	c.31C>T	c.(31-33)CGT>TGT	p.R11C	GSTM5_uc010ovu.1_5'UTR	NM_000851	NP_000842	P46439	GSTM5_HUMAN	glutathione S-transferase mu 5	11	GST N-terminal.				xenobiotic metabolic process	endoplasmic reticulum membrane	glutathione transferase activity			central_nervous_system(6)	6		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Colorectal(144;0.0131)|all cancers(265;0.0252)|Epithelial(280;0.0265)|Lung(183;0.0425)|COAD - Colon adenocarcinoma(174;0.0474)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	CTGGGACATCCGTGGGGTAAG	0.637													19	221					0	0	1	0	0
GSTM3	2947	broad.mit.edu	37	1	110280755	110280755	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110280755A>T	uc001dyo.2	-	6	640	c.330T>A	c.(328-330)GAT>GAA	p.D110E	GSTM3_uc001dyp.2_Missense_Mutation_p.D107E|GSTM3_uc010ovv.1_Missense_Mutation_p.D110E	NM_000849	NP_000840	P21266	GSTM3_HUMAN	glutathione S-transferase mu 3	110	GST C-terminal.				establishment of blood-nerve barrier|glutathione metabolic process|response to estrogen stimulus	cytoplasm	glutathione transferase activity|identical protein binding				0		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Colorectal(144;0.0339)|Lung(183;0.0426)|all cancers(265;0.113)|Epithelial(280;0.125)|COAD - Colon adenocarcinoma(174;0.134)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	GTGTGCGGAAATCCATTACTT	0.443													21	43					0	0	1	0	0
EPS8L3	79574	broad.mit.edu	37	1	110295781	110295781	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110295781G>A	uc001dyr.1	-	13	1303	c.1158C>T	c.(1156-1158)CCC>CCT	p.P386P	EPS8L3_uc001dys.1_Silent_p.P386P|EPS8L3_uc001dyq.1_Silent_p.P387P|EPS8L3_uc009wfm.1_Silent_p.P353P|EPS8L3_uc009wfn.1_Silent_p.P361P|EPS8L3_uc009wfo.1_Silent_p.P333P	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	386						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		CTGAGAATGTGGGTTGGTAGG	0.572													11	87					0	0	1	0	0
EPS8L3	79574	broad.mit.edu	37	1	110301041	110301041	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110301041G>A	uc001dyr.1	-	8	759	c.614C>T	c.(613-615)TCC>TTC	p.S205F	EPS8L3_uc001dys.1_Missense_Mutation_p.S205F|EPS8L3_uc001dyq.1_Missense_Mutation_p.S206F|EPS8L3_uc009wfm.1_Missense_Mutation_p.S172F|EPS8L3_uc009wfn.1_Missense_Mutation_p.S180F|EPS8L3_uc009wfo.1_Missense_Mutation_p.S152F	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	205	Pro-rich.					cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		GGGCCTTGGGGATGGTGGGAG	0.597													15	185					0	0	1	0	0
CSF1	1435	broad.mit.edu	37	1	110465872	110465872	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110465872C>T	uc001dyu.2	+	6	1042	c.629C>T	c.(628-630)CCC>CTC	p.P210L	CSF1_uc001dyt.2_Missense_Mutation_p.P210L|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Missense_Mutation_p.P210L	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	210	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		CCTCATCAGCCCCTCGCCCCC	0.617											OREG0013645	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	103					0	0	1	0	0
CSF1	1435	broad.mit.edu	37	1	110466201	110466201	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110466201G>A	uc001dyu.2	+	6	1371	c.958G>A	c.(958-960)GGG>AGG	p.G320R	CSF1_uc001dyt.2_Missense_Mutation_p.G320R|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Missense_Mutation_p.G320R	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	320	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		CGTACCCCAAGGGACAGAGCT	0.587											OREG0013645	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	77					0	0	1	0	0
CSF1	1435	broad.mit.edu	37	1	110466714	110466714	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110466714C>T	uc001dyu.2	+	6	1884	c.1471C>T	c.(1471-1473)CCG>TCG	p.P491S	CSF1_uc001dyt.2_Missense_Mutation_p.P375S|CSF1_uc001dyv.3_Missense_Mutation_p.P193S|CSF1_uc001dyw.3_Missense_Mutation_p.P491S	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	491	Lumenal (Potential).			Missing: Produces biologically active protein which is secreted.	cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		ATCCTTCAGCCCGCAGCTCCA	0.622													36	66					0	0	1	0	0
FAM40A	85369	broad.mit.edu	37	1	110596312	110596312	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110596312C>T	uc001dza.1	+	21	2311	c.2292C>T	c.(2290-2292)TTC>TTT	p.F764F	FAM40A_uc001dyz.1_Silent_p.F669F|FAM40A_uc009wfp.1_Silent_p.F588F	NM_033088	NP_149079	Q5VSL9	FA40A_HUMAN	hypothetical protein LOC85369	764						nucleus	protein binding			ovary(3)|large_intestine(1)	4		all_cancers(81;8.51e-05)|all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0154)|all cancers(265;0.0732)|Epithelial(280;0.0781)|Colorectal(144;0.115)|LUSC - Lung squamous cell carcinoma(189;0.137)		CTTGGGACTTCCAGGCAGAGG	0.582											OREG0013647	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	68					0	0	1	0	0
ALX3	257	broad.mit.edu	37	1	110612973	110612973	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110612973C>T	uc001dzb.2	-	1	350	c.262G>A	c.(262-264)GAG>AAG	p.E88K		NM_006492	NP_006483	O95076	ALX3_HUMAN	aristaless-like homeobox 3	88						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(81;2.35e-05)|all_epithelial(167;7.69e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.015)|all cancers(265;0.0706)|Epithelial(280;0.0758)|Colorectal(144;0.113)|LUSC - Lung squamous cell carcinoma(189;0.135)		GCGGGGCCCTCGTAGAAGTGG	0.731													4	19					0	0	1	0	0
UBL4B	164153	broad.mit.edu	37	1	110655414	110655414	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110655414G>A	uc001dzc.2	+	1	353	c.258G>A	c.(256-258)CAG>CAA	p.Q86Q		NM_203412	NP_981957	Q8N7F7	UBL4B_HUMAN	ubiquitin-like 4B	86						cytoplasm				ovary(1)	1		all_cancers(81;1.14e-05)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0236)|all cancers(265;0.0823)|Epithelial(280;0.0917)|Colorectal(144;0.109)|LUSC - Lung squamous cell carcinoma(189;0.134)		ACCAGCCGCAGACCCAGCCCC	0.582													21	110					0	0	1	0	0
SLC6A17	388662	broad.mit.edu	37	1	110717531	110717531	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110717531C>T	uc009wfq.2	+	5	1163	c.702C>T	c.(700-702)GCC>GCT	p.A234A		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	234	Helical; Name=4; (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		TCCTCGTGGCCTGGAGCATCG	0.602													23	43					0	0	1	0	0
SLC6A17	388662	broad.mit.edu	37	1	110737331	110737331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110737331C>T	uc009wfq.2	+	9	1891	c.1430C>T	c.(1429-1431)ACC>ATC	p.T477I	SLC6A17_uc001dze.1_Missense_Mutation_p.T75I	NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	477	Helical; Name=8; (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		ATGATCGGGACCATGGCAGGC	0.602													14	58					0	0	1	0	0
SLC6A17	388662	broad.mit.edu	37	1	110740790	110740790	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110740790C>T	uc009wfq.2	+	12	2369	c.1908C>T	c.(1906-1908)TTC>TTT	p.F636F		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	636	Helical; Name=12; (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		CTGTGGTGTTCGTCCTGCGGC	0.607													12	30					0	0	1	0	0
KCNC4	3749	broad.mit.edu	37	1	110754499	110754499	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110754499C>T	uc001dzh.2	+	1	435	c.378C>T	c.(376-378)TTC>TTT	p.F126F	KCNC4_uc001dzf.2_Silent_p.F126F|KCNC4_uc009wfr.2_Silent_p.F126F|KCNC4_uc001dzg.2_Silent_p.F126F|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	126	Cytoplasmic (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		GGCCGCTCTTCGAAGAGGAGC	0.657													6	57					0	0	1	0	0
KCNC4	3749	broad.mit.edu	37	1	110765834	110765834	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110765834C>T	uc001dzh.2	+	2	984	c.927C>T	c.(925-927)TTC>TTT	p.F309F	KCNC4_uc001dzf.2_Silent_p.F309F|KCNC4_uc009wfr.2_Silent_p.F309F|KCNC4_uc001dzg.2_Silent_p.F309F|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	309	Cytoplasmic (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		CGCTGGACTTCGTCAAGAACC	0.607													23	76					0	0	1	0	0
RBM15	64783	broad.mit.edu	37	1	110882722	110882722	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110882722A>G	uc001dzl.1	+	1	778	c.695A>G	c.(694-696)AAG>AGG	p.K232R	RBM15_uc001dzm.1_Missense_Mutation_p.K232R|uc001dzj.2_5'Flank	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	RNA binding motif protein 15	232	RRM 1.				interspecies interaction between organisms	nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)		CGGGCGGCCAAGCATGCCAGA	0.597			T	MKL1	acute megakaryocytic leukemia						OREG0013656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	73					0	0	1	0	0
PROK1	84432	broad.mit.edu	37	1	110998924	110998924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:110998924C>T	uc001dzs.2	+	3	320	c.269C>T	c.(268-270)CCG>CTG	p.P90L		NM_032414	NP_115790	P58294	PROK1_HUMAN	prokineticin 1 precursor	90					angiogenesis|positive regulation of cell division	extracellular region	growth factor activity				0		all_cancers(81;6.23e-06)|all_epithelial(167;2.12e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0239)|all cancers(265;0.0699)|Epithelial(280;0.0753)|Colorectal(144;0.105)|LUSC - Lung squamous cell carcinoma(189;0.135)		TCCAGGTTCCCGGACGGCAGG	0.542													30	69					0	0	1	0	0
KCNA10	3744	broad.mit.edu	37	1	111060399	111060399	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111060399C>T	uc001dzt.1	-	1	1399	c.1011G>A	c.(1009-1011)CTG>CTA	p.L337L		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	337						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		TCAGGATGGCCAGGGACATGT	0.547													43	142					0	0	1	0	0
KCNA10	3744	broad.mit.edu	37	1	111060798	111060798	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111060798G>A	uc001dzt.1	-	1	1000	c.612C>T	c.(610-612)CTC>CTT	p.L204L		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	204						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		ACTCAAAGAGGAGCCAGAACT	0.557													20	56					0	0	1	0	0
KCNA10	3744	broad.mit.edu	37	1	111061284	111061284	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111061284C>T	uc001dzt.1	-	1	514	c.126G>A	c.(124-126)GGG>GGA	p.G42G		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	42						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		AGGAGCTGCCCCCAGGCCGGC	0.557													18	37					0	0	1	0	0
KCNA2	3737	broad.mit.edu	37	1	111145995	111145995	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111145995C>T	uc001dzu.2	-	2	1906	c.1410G>A	c.(1408-1410)GAG>GAA	p.E470E	KCNA2_uc009wfv.1_Intron|KCNA2_uc009wfw.2_Silent_p.E470E	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	470						juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		CTCTAAAGTCCTCATTACTGT	0.388													21	131					0	0	1	0	0
KCNA2	3737	broad.mit.edu	37	1	111146191	111146191	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111146191G>A	uc001dzu.2	-	2	1710	c.1214C>T	c.(1213-1215)CCG>CTG	p.P405L	KCNA2_uc009wfv.1_Intron|KCNA2_uc009wfw.2_Missense_Mutation_p.P405L	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	405	Helical; Name=Segment S6; (Potential).					juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		GACAGGGACCGGTAAGGCAAT	0.488													15	106					0	0	1	0	0
KCNA3	3738	broad.mit.edu	37	1	111215776	111215776	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111215776G>A	uc001dzv.1	-	1	1880	c.1656C>T	c.(1654-1656)TCC>TCT	p.S552S		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	552						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGGTGGCAGTGGAATTGCCCG	0.463													37	128					0	0	1	0	0
KCNA3	3738	broad.mit.edu	37	1	111216202	111216202	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111216202G>A	uc001dzv.1	-	1	1454	c.1230C>T	c.(1228-1230)ATC>ATT	p.I410I		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	410	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGGAGAAAAGGATGACCCCAA	0.577													18	59					0	0	1	0	0
C1orf103	55791	broad.mit.edu	37	1	111494481	111494481	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111494481G>A	uc001eaa.2	-	2	1281	c.1025C>T	c.(1024-1026)CCT>CTT	p.P342L	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	342					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		CGTCCCACTAGGATCGATGGT	0.343													42	141					0	0	1	0	0
CEPT1	10390	broad.mit.edu	37	1	111724867	111724867	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111724867C>T	uc001eah.1	+	6	981	c.773C>T	c.(772-774)ACC>ATC	p.T258I	CEPT1_uc001eai.1_Missense_Mutation_p.T258I|CEPT1_uc001eaj.1_Missense_Mutation_p.T258I|CEPT1_uc009wfz.1_Intron	NM_001007794	NP_001007795	Q9Y6K0	CEPT1_HUMAN	choline/ethanolaminephosphotransferase	258	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	diacylglycerol cholinephosphotransferase activity|ethanolaminephosphotransferase activity|metal ion binding				0		all_cancers(81;2.27e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0173)|Colorectal(144;0.0375)|all cancers(265;0.0701)|LUSC - Lung squamous cell carcinoma(189;0.0888)|Epithelial(280;0.103)|COAD - Colon adenocarcinoma(174;0.141)	Choline(DB00122)	GTAGCAGGGACCATATTTTCC	0.338													17	48					0	0	1	0	0
DENND2D	79961	broad.mit.edu	37	1	111741362	111741362	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111741362C>T	uc001eak.1	-	3	446	c.246G>A	c.(244-246)CGG>CGA	p.R82R	DENND2D_uc001eal.1_Silent_p.R79R	NM_024901	NP_079177	Q9H6A0	DEN2D_HUMAN	DENN/MADD domain containing 2D	82	UDENN.									ovary(1)	1		all_cancers(81;0.00198)|all_epithelial(167;0.000686)|all_lung(203;0.00318)|Lung NSC(277;0.00499)		Lung(183;0.0162)|Colorectal(144;0.069)|all cancers(265;0.0757)|LUSC - Lung squamous cell carcinoma(189;0.0845)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.14)		GCAGGTTCTCCCGCTATAAGG	0.557													13	43					0	0	1	0	0
CHI3L2	1117	broad.mit.edu	37	1	111781455	111781455	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111781455C>T	uc001eam.2	+	8	890	c.819C>T	c.(817-819)TTC>TTT	p.F273F	CHI3L2_uc001ean.2_Silent_p.F263F|CHI3L2_uc001eao.2_Silent_p.F194F|CHI3L2_uc009wga.2_Silent_p.F194F	NM_004000	NP_003991	Q15782	CH3L2_HUMAN	chitinase 3-like 2 isoform a	273					chitin catabolic process	extracellular space	cation binding|chitinase activity			central_nervous_system(1)	1		all_cancers(81;1.89e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0171)|Colorectal(144;0.0387)|all cancers(265;0.0464)|LUSC - Lung squamous cell carcinoma(189;0.0872)|Epithelial(280;0.0994)|COAD - Colon adenocarcinoma(174;0.141)		GGCACTCCTTCACACTGGCCT	0.562													64	167					0	0	1	0	0
LOC149620	149620	broad.mit.edu	37	1	111826767	111826767	+	RNA	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111826767T>G	uc009wgb.2	+	6		c.1451T>G				NR_003928				Homo sapiens CHIA-like pseudogene, mRNA (cDNA clone IMAGE:5176731).												0						TGGACACTCCTTCCTTCTGAG	0.547													10	23					0	0	1	0	0
CHIA	27159	broad.mit.edu	37	1	111854894	111854894	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111854894C>T	uc001eas.2	+	4	241	c.138C>T	c.(136-138)ATC>ATT	p.I46I	CHIA_uc001ear.2_Intron|CHIA_uc001eaq.2_Intron|CHIA_uc009wgc.2_Intron|CHIA_uc001eat.2_Intron|CHIA_uc001eav.2_Intron|CHIA_uc001eau.2_Intron|CHIA_uc009wgd.2_Intron	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	46					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		CTGACAACATCGACCCCTGCC	0.567													39	88					0	0	1	0	0
CHIA	27159	broad.mit.edu	37	1	111861250	111861250	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111861250G>A	uc001eas.2	+	9	968	c.865G>A	c.(865-867)GGT>AGT	p.G289S	CHIA_uc001ear.2_Missense_Mutation_p.G181S|CHIA_uc001eaq.2_Missense_Mutation_p.G181S|CHIA_uc009wgc.2_Missense_Mutation_p.G181S|CHIA_uc001eat.2_Missense_Mutation_p.G128S|CHIA_uc001eav.2_Missense_Mutation_p.G128S|CHIA_uc001eau.2_Missense_Mutation_p.G128S|CHIA_uc009wgd.2_Missense_Mutation_p.G128S	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	289					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		CTCTGGTGCTGGTCCTGCTGG	0.537													60	103					0	0	1	0	0
CHIA	27159	broad.mit.edu	37	1	111861848	111861848	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111861848G>A	uc001eas.2	+	10	1125	c.1022G>A	c.(1021-1023)AGC>AAC	p.S341N	CHIA_uc001ear.2_Missense_Mutation_p.S233N|CHIA_uc001eaq.2_Missense_Mutation_p.S233N|CHIA_uc009wgc.2_Missense_Mutation_p.S233N|CHIA_uc001eat.2_Missense_Mutation_p.S180N|CHIA_uc001eav.2_Missense_Mutation_p.S180N|CHIA_uc001eau.2_Missense_Mutation_p.S180N|CHIA_uc009wgd.2_Missense_Mutation_p.S180N	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	341					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		AACATCAAGAGCTTCGATATT	0.478													27	71					0	0	1	0	0
C1orf88	128344	broad.mit.edu	37	1	111889590	111889591	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111889590_111889591CC>TT	uc001eaw.2	+	2	158_159	c.78_79CC>TT	c.(76-81)TTCCAT>TTTTAT	p.H27Y	C1orf88_uc001eax.2_Missense_Mutation_p.H27Y|C1orf88_uc009wge.1_Missense_Mutation_p.H27Y|C1orf88_uc001eay.2_5'Flank	NM_181643	NP_857594	Q8TCI5	CA088_HUMAN	hypothetical protein LOC128344	27										ovary(1)|skin(1)	2		all_cancers(81;3.21e-05)|all_epithelial(167;1.19e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0239)|Colorectal(144;0.0301)|all cancers(265;0.0677)|Epithelial(280;0.0897)|COAD - Colon adenocarcinoma(174;0.116)|LUSC - Lung squamous cell carcinoma(189;0.135)		TTCCTCACTTCCATCCCCCGAA	0.49													25	70					0	0	1	0	0
OVGP1	5016	broad.mit.edu	37	1	111957659	111957659	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111957659G>A	uc001eba.2	-	11	1520	c.1464C>T	c.(1462-1464)ACC>ACT	p.T488T	OVGP1_uc001eaz.2_Silent_p.T450T|OVGP1_uc010owb.1_Silent_p.T136T	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	488					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		TCTCTCCAGGGGTCATGGACT	0.532													17	75					0	0	1	0	0
OVGP1	5016	broad.mit.edu	37	1	111957747	111957747	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111957747G>A	uc001eba.2	-	11	1432	c.1376C>T	c.(1375-1377)TCC>TTC	p.S459F	OVGP1_uc001eaz.2_Missense_Mutation_p.S421F|OVGP1_uc010owb.1_Missense_Mutation_p.S107F	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	459					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		CTTTCCAAGGGATACAGTTTC	0.502													28	74					0	0	1	0	0
OVGP1	5016	broad.mit.edu	37	1	111964021	111964021	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111964021G>A	uc001eba.2	-	8	836	c.780C>T	c.(778-780)ATC>ATT	p.I260I	OVGP1_uc001eaz.2_Silent_p.I222I|OVGP1_uc010owb.1_Intron	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	260					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		CATAGGTGGGGATCCCCATGA	0.512													32	97					0	0	1	0	0
OVGP1	5016	broad.mit.edu	37	1	111964046	111964046	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111964046G>A	uc001eba.2	-	8	811	c.755C>T	c.(754-756)CCC>CTC	p.P252L	OVGP1_uc001eaz.2_Missense_Mutation_p.P214L|OVGP1_uc010owb.1_Intron	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	252					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		CTTCTCTGAGGGTGCCCCAAG	0.527													27	92					0	0	1	0	0
OVGP1	5016	broad.mit.edu	37	1	111965556	111965556	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111965556G>A	uc001eba.2	-	6	657	c.601C>T	c.(601-603)CTA>TTA	p.L201L	OVGP1_uc001eaz.2_Silent_p.L163L|OVGP1_uc010owb.1_5'UTR	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	201					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		CACCTTCCTAGAAAGCGCACA	0.557													112	248					0	0	1	0	0
OVGP1	5016	broad.mit.edu	37	1	111966270	111966270	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111966270G>A	uc001eba.2	-	5	434	c.378C>T	c.(376-378)TCC>TCT	p.S126S	OVGP1_uc001eaz.2_Silent_p.S88S|OVGP1_uc010owb.1_5'UTR|OVGP1_uc010owc.1_Silent_p.S116S	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	126					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		TCCTCAGAAGGGATATAACTG	0.443													45	70					0	0	1	0	0
OVGP1	5016	broad.mit.edu	37	1	111969148	111969148	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111969148G>A	uc001eba.2	-	3	227	c.171C>T	c.(169-171)GCC>GCT	p.A57A	OVGP1_uc001eaz.2_5'UTR|OVGP1_uc010owb.1_5'UTR|OVGP1_uc010owc.1_Silent_p.A47A	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	57					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		TTGAGGCAAAGGCAAATATCA	0.483													17	82					0	0	1	0	0
WDR77	79084	broad.mit.edu	37	1	111983920	111983920	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111983920G>A	uc001ebb.2	-	10	1000	c.961C>T	c.(961-963)CAG>TAG	p.Q321*	WDR77_uc010owd.1_RNA|WDR77_uc010owe.1_Nonsense_Mutation_p.Q257*	NM_024102	NP_077007	Q9BQA1	MEP50_HUMAN	WD repeat domain 77	321				LTTVGWDHQVVHHVVPTEPLPAPGPASVTE -> DLQVLLS RLDLRQKASPP (in Ref. 7; AAH09411).	ncRNA metabolic process|spliceosomal snRNP assembly	cytosol|nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding				0		all_cancers(81;0.000902)|all_epithelial(167;0.00056)|all_lung(203;0.00277)|Lung NSC(277;0.0043)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		TGGACGACCTGATGGTCCCAG	0.527													39	81					0	0	1	0	0
ATP5F1	515	broad.mit.edu	37	1	111996918	111996918	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:111996918C>T	uc001ebc.2	+	3	584	c.163C>T	c.(163-165)CGT>TGT	p.R55C	ATP5F1_uc009wgf.1_Missense_Mutation_p.R202C|ATP5F1_uc001ebd.3_Intron	NM_001688	NP_001679	P24539	AT5F1_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	55					ATP catabolic process|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding				0		all_cancers(81;8.16e-06)|all_epithelial(167;5.63e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		AGGAAAAGTTCGTTATGGACT	0.438													50	97					0	0	1	0	0
ADORA3	140	broad.mit.edu	37	1	112031331	112031331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:112031331C>T	uc001ebf.2	-	3	1540	c.773G>A	c.(772-774)GGA>GAA	p.G258E	ADORA3_uc001ebg.3_Missense_Mutation_p.G177E	NM_020683	NP_065734	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 1	Error:Variant_position_missing_in_P33765_after_alignment					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	GGCCAGGGTTCCTTTGTCGTC	0.537													8	40					0	0	1	0	0
ADORA3	140	broad.mit.edu	37	1	112042662	112042662	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:112042662G>A	uc001ebh.3	-	2	1634	c.867C>T	c.(865-867)TTC>TTT	p.F289F	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Intron	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	289	Cytoplasmic (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	AGGTTTCCTTGAACTTCTTTA	0.443													20	40					0	0	1	0	0
ADORA3	140	broad.mit.edu	37	1	112043097	112043097	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:112043097G>A	uc001ebh.3	-	2	1199	c.432C>T	c.(430-432)ACC>ACT	p.T144T	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Intron	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	144	Helical; Name=4; (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	CAAACATGGGGGTCAATCCCA	0.488													45	112					0	0	1	0	0
DDX20	11218	broad.mit.edu	37	1	112305305	112305305	+	Missense_Mutation	SNP	C	T	T	rs61755354		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:112305305C>T	uc001ebs.2	+	9	1468	c.1111C>T	c.(1111-1113)CGT>TGT	p.R371C	DDX20_uc010owf.1_Missense_Mutation_p.R133C|DDX20_uc001ebt.2_5'UTR	NM_007204	NP_009135	Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	371	Helicase C-terminal.				assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding			lung(1)|kidney(1)	2		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAAGACTTCTCGTGGGATTGA	0.403													17	125					0	0	1	0	0
KCND3	3752	broad.mit.edu	37	1	112524985	112524985	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:112524985C>T	uc001ebu.1	-	2	844	c.364G>A	c.(364-366)GGC>AGC	p.G122S	KCND3_uc001ebv.1_Missense_Mutation_p.G122S	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	122	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		GGGAGGATGCCGTAGAAGGCC	0.617													10	71					0	0	1	0	0
KCND3	3752	broad.mit.edu	37	1	112525033	112525033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:112525033G>A	uc001ebu.1	-	2	796	c.316C>T	c.(316-318)CCG>TCG	p.P106S	KCND3_uc001ebv.1_Missense_Mutation_p.P106S	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	106	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		TCGTAGCGCGGGTAGTGCAGC	0.602													31	63					0	0	1	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112958820	112958820	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:112958820C>T	uc001ebx.2	+	3	261	c.33C>T	c.(31-33)CTC>CTT	p.L11L		NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	11						actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGCCTGAACTCCTGACACTAT	0.343													33	103					0	0	1	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112999795	112999796	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:112999795_112999796CC>TT	uc001ebx.2	+	6	1909_1910	c.1681_1682CC>TT	c.(1681-1683)CCC>TTC	p.P561F	CTTNBP2NL_uc001ebz.2_RNA	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	561						actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCCCCTGAGCCCCCTGTCTCCA	0.554													29	89					0	0	1	0	0
WNT2B	7482	broad.mit.edu	37	1	113058976	113058976	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:113058976G>A	uc001ecb.2	+	3	1133	c.618G>A	c.(616-618)AAG>AAA	p.K206K	WNT2B_uc001eca.2_Silent_p.K187K|WNT2B_uc009wgg.2_Silent_p.K114K	NM_024494	NP_078613	Q93097	WNT2B_HUMAN	wingless-type MMTV integration site family,	206					chondrocyte differentiation|cornea development in camera-type eye|dorsal/ventral axis specification|forebrain regionalization|hemopoietic stem cell proliferation|iris morphogenesis|lens development in camera-type eye|lung induction|male gonad development|neuron differentiation|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding|signal transducer activity			ovary(2)|breast(2)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;7.31e-07)|all_epithelial(167;4.59e-06)|all_lung(203;2.56e-05)|Lung NSC(69;4.38e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGGATGCCAAGGAGAAGAGGC	0.537													6	86					0	0	1	0	0
WNT2B	7482	broad.mit.edu	37	1	113059742	113059742	+	Splice_Site	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:113059742G>C	uc001ecb.2	+	4	1197	c.682_splice	c.e4-1	p.A228_splice	WNT2B_uc001eca.2_Splice_Site_p.A209_splice|WNT2B_uc009wgg.2_Splice_Site_p.A136_splice	NM_024494	NP_078613	Q93097	WNT2B_HUMAN	wingless-type MMTV integration site family,						chondrocyte differentiation|cornea development in camera-type eye|dorsal/ventral axis specification|forebrain regionalization|hemopoietic stem cell proliferation|iris morphogenesis|lens development in camera-type eye|lung induction|male gonad development|neuron differentiation|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding|signal transducer activity			ovary(2)|breast(2)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;7.31e-07)|all_epithelial(167;4.59e-06)|all_lung(203;2.56e-05)|Lung NSC(69;4.38e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCCTCCCCCAGGCTGTGCGGC	0.567													20	70					0	0	1	0	0
ST7L	54879	broad.mit.edu	37	1	113084621	113084621	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:113084621G>A	uc001ecd.2	-	14	1886	c.1581C>T	c.(1579-1581)GCC>GCT	p.A527A	ST7L_uc009wgh.2_RNA|ST7L_uc001ecc.2_Silent_p.A344A|ST7L_uc010owg.1_Silent_p.A462A|ST7L_uc010owh.1_Silent_p.A321A|ST7L_uc001ece.2_Silent_p.A496A|ST7L_uc001ecf.2_Silent_p.A510A|ST7L_uc001ecg.2_RNA|ST7L_uc010owi.1_Silent_p.A462A|ST7L_uc001ech.2_Silent_p.A510A|ST7L_uc001eci.2_Silent_p.A527A|ST7L_uc009wgi.1_RNA	NM_017744	NP_060214	Q8TDW4	ST7L_HUMAN	suppression of tumorigenicity 7-like isoform 1	527					negative regulation of cell growth	integral to membrane	binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAGTGAGAATGGCTATCATTG	0.378													22	69					0	0	1	0	0
MOV10	4343	broad.mit.edu	37	1	113231680	113231680	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:113231680C>T	uc001eck.2	+	3	531	c.261C>T	c.(259-261)TTC>TTT	p.F87F	MOV10_uc001ecl.2_Silent_p.F87F|MOV10_uc001ecn.2_Silent_p.F87F|MOV10_uc001ecm.2_Silent_p.F27F|MOV10_uc009wgj.1_Silent_p.F27F	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	87					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		ACGTGCGGTTCCCAGAAAAGA	0.498													20	42					0	0	1	0	0
MOV10	4343	broad.mit.edu	37	1	113234340	113234340	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:113234340C>T	uc001eck.2	+	6	1160	c.890C>T	c.(889-891)CCT>CTT	p.P297L	MOV10_uc001ecl.2_Missense_Mutation_p.P297L|MOV10_uc001ecn.2_Missense_Mutation_p.P297L|MOV10_uc001ecm.2_Missense_Mutation_p.P237L|MOV10_uc009wgj.1_Missense_Mutation_p.P237L	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	297					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		TACTACCCACCTCCCCGCCTC	0.542													33	96					0	0	1	0	0
MOV10	4343	broad.mit.edu	37	1	113235516	113235516	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:113235516C>T	uc001eck.2	+	7	1375	c.1105C>T	c.(1105-1107)CCT>TCT	p.P369S	MOV10_uc001ecl.2_Missense_Mutation_p.P369S|MOV10_uc001ecn.2_Missense_Mutation_p.P369S|MOV10_uc001ecm.2_Missense_Mutation_p.P309S|MOV10_uc009wgj.1_Missense_Mutation_p.P309S	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	369					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		GACCTGGGACCCTGTGGACCA	0.612													7	21					0	0	1	0	0
MOV10	4343	broad.mit.edu	37	1	113237474	113237474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:113237474C>T	uc001eck.2	+	10	1846	c.1576C>T	c.(1576-1578)CCA>TCA	p.P526S	MOV10_uc001ecl.2_Intron|MOV10_uc001ecn.2_Missense_Mutation_p.P526S|MOV10_uc001ecm.2_Missense_Mutation_p.P466S|MOV10_uc009wgj.1_Missense_Mutation_p.P466S	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	526	ATP (By similarity).				mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		CTTTGGGCCTCCAGGCACCGG	0.597													5	65					0	0	1	0	0
SLC16A1	6566	broad.mit.edu	37	1	113460565	113460565	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:113460565G>A	uc001ecx.2	-	4	1295	c.463C>T	c.(463-465)CCT>TCT	p.P155S	SLC16A1_uc001ecy.2_Missense_Mutation_p.P155S|SLC16A1_uc001ecz.2_Missense_Mutation_p.P155S	NM_003051	NP_003042	P53985	MOT1_HUMAN	solute carrier family 16, member 1	155	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	integral to membrane|membrane fraction|plasma membrane	mevalonate transmembrane transporter activity|protein binding|secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	Lung SC(450;0.246)	all_cancers(81;7.6e-08)|all_epithelial(167;3.82e-07)|all_lung(203;3.07e-05)|Lung NSC(69;5.51e-05)|Prostate(1639;0.00232)		Epithelial(280;7.31e-13)|all cancers(265;5.1e-10)|Kidney(133;5.29e-07)|KIRC - Kidney renal clear cell carcinoma(1967;8.63e-06)|OV - Ovarian serous cystadenocarcinoma(397;1.48e-05)|BRCA - Breast invasive adenocarcinoma(282;0.003)|LUSC - Lung squamous cell carcinoma(189;0.008)|Lung(183;0.00948)|Colorectal(144;0.0325)|COAD - Colon adenocarcinoma(174;0.0643)	Pyruvic acid(DB00119)	AGGAACACAGGGCTGCCTGCC	0.507													23	71					0	0	1	0	0
LRIG2	9860	broad.mit.edu	37	1	113638980	113638980	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:113638980C>T	uc001edf.1	+	8	1282	c.1084C>T	c.(1084-1086)CAG>TAG	p.Q362*	LRIG2_uc009wgn.1_Nonsense_Mutation_p.Q259*	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	362	LRR 13.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TTCCAATCTTCAGACATTGTA	0.323													37	100					0	0	1	0	0
MAGI3	260425	broad.mit.edu	37	1	114186370	114186370	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114186370C>T	uc001edk.2	+	11	2153	c.1972C>T	c.(1972-1974)CCT>TCT	p.P658S	MAGI3_uc001edh.3_Missense_Mutation_p.P683S|MAGI3_uc001edi.3_Missense_Mutation_p.P658S|MAGI3_uc010owm.1_Missense_Mutation_p.P683S|MAGI3_uc001edj.2_Missense_Mutation_p.P379S	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	683					apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTAAGGTCCTCCTTCACCAAC	0.393													36	98					0	0	1	0	0
MAGI3	260425	broad.mit.edu	37	1	114196635	114196635	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114196635C>T	uc001edk.2	+	15	2805	c.2624C>T	c.(2623-2625)CCA>CTA	p.P875L	MAGI3_uc001edh.3_Missense_Mutation_p.P900L|MAGI3_uc001edi.3_Missense_Mutation_p.P875L|MAGI3_uc010owm.1_Missense_Mutation_p.P900L|MAGI3_uc001edj.2_Missense_Mutation_p.P596L	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	900	Interaction with LPAR2 and GRIN2B.|PDZ 5.				apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAACCACCTCCAGGAGGTAAG	0.448													59	223					0	0	1	0	0
PTPN22	26191	broad.mit.edu	37	1	114377567	114377567	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114377567C>T	uc001eds.2	-	14	1989	c.1859G>A	c.(1858-1860)CGG>CAG	p.R620Q	PTPN22_uc009wgq.2_Nonsense_Mutation_p.W565*|PTPN22_uc010owo.1_Nonsense_Mutation_p.W376*|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Nonsense_Mutation_p.W620*|PTPN22_uc009wgs.2_Nonsense_Mutation_p.W493*|PTPN22_uc001edu.2_Missense_Mutation_p.R620Q	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	620					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCAGGTGTCCATACAGGAAG	0.318													13	193					0	0	1	0	0
PTPN22	26191	broad.mit.edu	37	1	114380799	114380799	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114380799G>A	uc001eds.2	-	13	1353	c.1223C>T	c.(1222-1224)CCT>CTT	p.P408L	PTPN22_uc009wgq.2_Missense_Mutation_p.P353L|PTPN22_uc010owo.1_Missense_Mutation_p.P164L|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.P408L|PTPN22_uc009wgs.2_Missense_Mutation_p.P281L|PTPN22_uc001edu.2_Missense_Mutation_p.P408L	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	408					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTTCTGAAGAGGCTCCCCAAC	0.378													6	99					0	0	1	0	0
PTPN22	26191	broad.mit.edu	37	1	114380964	114380964	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114380964G>A	uc001eds.2	-	13	1188	c.1058C>T	c.(1057-1059)TCC>TTC	p.S353F	PTPN22_uc009wgq.2_Missense_Mutation_p.S298F|PTPN22_uc010owo.1_Missense_Mutation_p.S109F|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.S353F|PTPN22_uc009wgs.2_Missense_Mutation_p.S226F|PTPN22_uc001edu.2_Missense_Mutation_p.S353F	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	353					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAAGTCAAAGGAAGAAGATTC	0.348													12	28					0	0	1	0	0
BCL2L15	440603	broad.mit.edu	37	1	114424416	114424416	+	Silent	SNP	G	A	A	rs114942995	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114424416G>A	uc001edw.2	-	3	625	c.453C>T	c.(451-453)TTC>TTT	p.F151F	uc001edv.1_Intron|BCL2L15_uc001edx.2_Intron|BCL2L15_uc001edy.2_Intron|BCL2L15_uc001edz.1_RNA	NM_001010922	NP_001010922	Q5TBC7	B2L15_HUMAN	pro-apoptotic Bcl-2 protein	151					apoptosis					ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.95e-08)|all_epithelial(167;9.95e-08)|all_lung(203;1.31e-05)|Lung NSC(69;2.46e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGCCCTGGATGAACTCCCGGA	0.493													6	25					0	0	1	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114450762	114450762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114450762C>T	uc001eeg.2	+	3	658	c.487C>T	c.(487-489)CAC>TAC	p.H163Y	DCLRE1B_uc001eeh.2_Missense_Mutation_p.H37Y|DCLRE1B_uc001eei.2_Missense_Mutation_p.H37Y	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	163					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGAAGCTGCCCACCAGATTGT	0.463								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					33	102					0	0	1	0	0
OLFML3	56944	broad.mit.edu	37	1	114523091	114523091	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114523091C>T	uc001eer.1	+	2	361	c.252C>T	c.(250-252)TCC>TCT	p.S84S	OLFML3_uc001ees.1_Silent_p.S64S|OLFML3_uc001eet.1_5'UTR	NM_020190	NP_064575	Q9NRN5	OLFL3_HUMAN	olfactomedin-like 3 precursor	84	Potential.				multicellular organismal development	extracellular region					0	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACACCATCTCCGGGAGAGTGG	0.587													14	79					0	0	1	0	0
SYT6	148281	broad.mit.edu	37	1	114636424	114636424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114636424C>T	uc001eev.2	-	7	1512	c.1262G>A	c.(1261-1263)GGA>GAA	p.G421E	SYT6_uc001eeu.2_Intron	NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	506	Cytoplasmic (Potential).|Necessary for cell membrane association (isoform 2) (By similarity).				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCGAGGGTTTCCCTGGTGAAA	0.458													6	67					0	0	1	0	0
SYT6	148281	broad.mit.edu	37	1	114641717	114641717	+	Nonsense_Mutation	SNP	G	A	A	rs149899868		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114641717G>A	uc001eev.2	-	5	1358	c.1108C>T	c.(1108-1110)CGA>TGA	p.R370*	SYT6_uc001eeu.2_Nonsense_Mutation_p.R15*	NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	455	Cytoplasmic (Potential).|C2 2.				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCTACCTACCGATCATAGTCC	0.512													45	92					0	0	1	0	0
SYT6	148281	broad.mit.edu	37	1	114680148	114680148	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114680148G>A	uc001eev.2	-	3	1035	c.785C>T	c.(784-786)TCC>TTC	p.S262F		NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	347	Cytoplasmic (Potential).				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTTCCAGATGGAGGTTTCCCG	0.522													33	66					0	0	1	0	0
SYT6	148281	broad.mit.edu	37	1	114680293	114680293	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:114680293G>A	uc001eev.2	-	3	890	c.640C>T	c.(640-642)CAC>TAC	p.H214Y		NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	299	Cytoplasmic (Potential).|C2 1.				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGGGAAGTGGAAGTTCTCA	0.557													28	57					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115079143	115079143	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115079143G>A	uc001eez.2	-	29		c.4500C>T				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGATCTACGTGGATGATGGGC	0.502													18	175					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115130449	115130449	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115130449G>A	uc001efd.1	-	19	3258	c.2556C>T	c.(2554-2556)TTC>TTT	p.F852F	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Silent_p.F795F	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	852	dDENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGGACTTACGGAATGGTTCCC	0.483													17	49					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115143510	115143510	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115143510C>T	uc001efd.1	-	14	2589	c.1887G>A	c.(1885-1887)ATG>ATA	p.M629I	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.M572I	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	629	DENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAGGAGCTTCCATGACACTTC	0.423													38	84					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115161063	115161063	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115161063C>T	uc001efd.1	-	8	1970	c.1268G>A	c.(1267-1269)GGG>GAG	p.G423E	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.G366E	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	423										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTTCTTCTTCCCTCTTTTAGA	0.343													20	72					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115168320	115168320	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115168320C>T	uc001efd.1	-	4	988	c.286G>A	c.(286-288)GAA>AAA	p.E96K	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.E96K	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	96										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCTTATTTTCATTCTCACTT	0.343													35	98					0	0	1	0	0
AMPD1	270	broad.mit.edu	37	1	115220557	115220557	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115220557C>T	uc001efe.1	-	9	1282	c.1198G>A	c.(1198-1200)GGG>AGG	p.G400R	AMPD1_uc001eff.1_Missense_Mutation_p.G396R	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	400					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	AAATATTCCCCATTAATGTAA	0.358													19	148					0	0	1	0	0
AMPD1	270	broad.mit.edu	37	1	115221019	115221019	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115221019C>T	uc001efe.1	-	8	1111	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	AMPD1_uc001eff.1_Missense_Mutation_p.E339K	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	343					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GCAAAAAGTTCCTTTAGGGTC	0.378													50	118					0	0	1	0	0
AMPD1	270	broad.mit.edu	37	1	115226835	115226835	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115226835C>T	uc001efe.1	-	5	616	c.532G>A	c.(532-534)GAG>AAG	p.E178K	AMPD1_uc001eff.1_Missense_Mutation_p.E174K	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	178					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TAGAAGCTCTCATTTGCTACC	0.328													51	88					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115399878	115399878	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115399878C>T	uc001efr.2	+	4	428	c.219C>T	c.(217-219)TTC>TTT	p.F73F	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Silent_p.F73F|SYCP1_uc009wgw.2_Silent_p.F73F	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	73	Asp/Glu-rich (acidic).				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAGTTAATTTCTTGCCCGTGC	0.279													10	43					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115428861	115428861	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115428861C>T	uc001efr.2	+	14	1330	c.1121C>T	c.(1120-1122)TCG>TTG	p.S374L	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.S374L|SYCP1_uc009wgw.2_Missense_Mutation_p.S374L	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	374	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCTGCTCATTCGTTTGTGGTT	0.308													48	104					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115453026	115453026	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115453026G>A	uc001efr.2	+	17	1538	c.1329G>A	c.(1327-1329)AAG>AAA	p.K443K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Silent_p.K443K|SYCP1_uc009wgw.2_Silent_p.K443K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	443	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGGGAGAAAAGGAAACACTTT	0.338													12	81					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115454199	115454199	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115454199G>A	uc001efr.2	+	18	1734	c.1525G>A	c.(1525-1527)GAG>AAG	p.E509K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.E509K|SYCP1_uc009wgw.2_Missense_Mutation_p.E509K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	509	Potential.			IQLTAITTSEQYYSKEVKDLKTELENEK -> YSYCHYHKW TVLPKRGQRPKLSSKRE (in Ref. 2; BAA22586).	cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCTTGAAAACGAGAAGTATGT	0.244													12	29					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115456614	115456614	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115456614G>A	uc001efr.2	+	20	1875	c.1666G>A	c.(1666-1668)GAA>AAA	p.E556K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.E556K|SYCP1_uc009wgw.2_Missense_Mutation_p.E556K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	556	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAAGCAAGAAGAAAGGATGTT	0.244													19	48					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115487056	115487056	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115487056G>A	uc001efr.2	+	24	2232	c.2023G>A	c.(2023-2025)GAA>AAA	p.E675K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.E675K|SYCP1_uc009wgw.2_Missense_Mutation_p.E675K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	675	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAAGATATCAGAAGAAAATCT	0.274													16	60					0	0	1	0	0
TSHB	7252	broad.mit.edu	37	1	115576077	115576077	+	Missense_Mutation	SNP	G	A	A	rs121918669		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115576077G>A	uc001efs.1	+	2	162	c.94G>A	c.(94-96)GAA>AAA	p.E32K		NM_000549	NP_000540	P01222	TSHB_HUMAN	thyroid stimulating hormone, beta precursor	32					anatomical structure morphogenesis|cell-cell signaling|cellular nitrogen compound metabolic process|G-protein coupled receptor protein signaling pathway|hormone biosynthetic process|peptide hormone processing	extracellular region	hormone activity				0	Lung SC(450;0.211)	all_cancers(81;3.22e-07)|all_epithelial(167;1.4e-06)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		AATGCACATCGAAAGGAGAGA	0.423													42	139					0	0	1	0	0
NGF	4803	broad.mit.edu	37	1	115829395	115829395	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:115829395G>A	uc001efu.1	-	3	191	c.22C>T	c.(22-24)CTG>TTG	p.L8L		NM_002506	NP_002497	P01138	NGF_HUMAN	nerve growth factor, beta polypeptide precursor	8					activation of MAPKK activity|activation of phospholipase C activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of cell cycle|nerve growth factor processing|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|Golgi lumen	growth factor activity|nerve growth factor receptor binding			upper_aerodigestive_tract(2)	2	Lung SC(450;0.211)	all_cancers(81;1.07e-06)|all_epithelial(167;4.43e-06)|all_lung(203;2.86e-05)|Lung NSC(69;4.99e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)	Clenbuterol(DB01407)	GCTGTGATCAGAGTGTAGAAC	0.478													34	80					0	0	1	0	0
CASQ2	845	broad.mit.edu	37	1	116311050	116311050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:116311050G>A	uc001efx.3	-	1	377	c.113C>T	c.(112-114)TCC>TTC	p.S38F	CASQ2_uc010owu.1_Missense_Mutation_p.S38F	NM_001232	NP_001223	O14958	CASQ2_HUMAN	cardiac calsequestrin 2 precursor	38					heart development|striated muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;1.25e-06)|all_epithelial(167;1.02e-06)|all_lung(203;8.03e-06)|Lung NSC(69;5.01e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		GTTCTTCTCGGAAAGACTTAC	0.438													92	61					0	0	1	0	0
CASQ2	845	broad.mit.edu	37	1	116311118	116311118	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:116311118G>A	uc001efx.3	-	1	309	c.45C>T	c.(43-45)TCC>TCT	p.S15S	CASQ2_uc010owu.1_Silent_p.S15S	NM_001232	NP_001223	O14958	CASQ2_HUMAN	cardiac calsequestrin 2 precursor	15					heart development|striated muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;1.25e-06)|all_epithelial(167;1.02e-06)|all_lung(203;8.03e-06)|Lung NSC(69;5.01e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CCCTGCAAGAGGACAGAAAAT	0.418													18	37					0	0	1	0	0
NHLH2	4808	broad.mit.edu	37	1	116380921	116380921	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:116380921C>T	uc009wgz.2	-	2	578	c.73G>A	c.(73-75)GGC>AGC	p.G25S	NHLH2_uc001efy.2_Missense_Mutation_p.G25S	NM_001111061	NP_001104531	Q02577	HEN2_HUMAN	nescient helix loop helix 2	25					cell differentiation|central nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Lung SC(450;0.184)	all_cancers(81;1.75e-06)|all_epithelial(167;1.16e-06)|all_lung(203;9.55e-06)|Lung NSC(69;5.83e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		TCCGTGCCGCCCAGGGACTCC	0.677													7	20					0	0	1	0	0
SLC22A15	55356	broad.mit.edu	37	1	116569584	116569584	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:116569584C>T	uc001egb.3	+	5	799	c.669C>T	c.(667-669)TCC>TCT	p.S223S	SLC22A15_uc001ega.2_Silent_p.S223S	NM_018420	NP_060890	Q8IZD6	S22AF_HUMAN	solute carrier family 22, member 15	223					ion transport	integral to membrane	transmembrane transporter activity			large_intestine(2)	2	Lung SC(450;0.184)	all_cancers(81;3.17e-06)|all_epithelial(167;2.32e-06)|all_lung(203;9.81e-06)|Lung NSC(69;5.94e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		TCATCCGCTCCTGGAGGACCC	0.448													60	123					0	0	1	0	0
C1orf161	126868	broad.mit.edu	37	1	116670241	116670241	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:116670241C>T	uc001egc.1	+	5	901	c.636C>T	c.(634-636)TCC>TCT	p.S212S		NM_152367	NP_689580	Q8N8X9	MB213_HUMAN	hypothetical protein LOC126868	212											0	Lung SC(450;0.184)	all_cancers(81;0.00142)|all_lung(203;0.000139)|all_epithelial(167;0.000401)|Lung NSC(69;0.000705)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		GCTGGCCTTCCCAAGAGAGAG	0.587													9	25					0	0	1	0	0
ATP1A1	476	broad.mit.edu	37	1	116937852	116937852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:116937852C>T	uc001ege.2	+	13	2120	c.1781C>T	c.(1780-1782)CCT>CTT	p.P594L	ATP1A1_uc010owv.1_Missense_Mutation_p.P563L|ATP1A1_uc010oww.1_Missense_Mutation_p.P594L|ATP1A1_uc010owx.1_Missense_Mutation_p.P563L|C1orf203_uc009whb.2_Intron	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	594	Cytoplasmic (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	ATGATTGACCCTCCACGGGCG	0.522													16	130					0	0	1	0	0
ATP1A1	476	broad.mit.edu	37	1	116943869	116943869	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:116943869C>T	uc001ege.2	+	20	3175	c.2836C>T	c.(2836-2838)CAG>TAG	p.Q946*	ATP1A1_uc010owv.1_Nonsense_Mutation_p.Q915*|ATP1A1_uc010oww.1_Nonsense_Mutation_p.Q946*|ATP1A1_uc010owx.1_Nonsense_Mutation_p.Q915*|C1orf203_uc009whb.2_Intron|C1orf203_uc001egg.3_Intron|ATP1A1_uc001egh.2_Nonsense_Mutation_p.Q88*	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	946	Cytoplasmic (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	TTCGGTCTTCCAGCAGGGGAT	0.488													8	59					0	0	1	0	0
IGSF3	3321	broad.mit.edu	37	1	117122373	117122373	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:117122373G>A	uc001egr.1	-	10	3680	c.2975C>T	c.(2974-2976)TCC>TTC	p.S992F	IGSF3_uc001egq.1_Missense_Mutation_p.S1012F	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	992	Ig-like C2-type 8.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		AGTCCTCAGGGAATACCAGGC	0.458													15	39					0	0	1	0	0
CD2	914	broad.mit.edu	37	1	117297532	117297532	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:117297532G>A	uc001egu.3	+	2	370	c.341G>A	c.(340-342)GGA>GAA	p.G114E	CD2_uc010owz.1_Missense_Mutation_p.G114E|CD2_uc010oxa.1_Missense_Mutation_p.G114E	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	114	Extracellular (Potential).|LFA-3 (CD58) binding region 2.|Ig-like V-type.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	GATACAAAAGGAAAAAATGTG	0.308													7	45					0	0	1	0	0
CD2	914	broad.mit.edu	37	1	117311310	117311310	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:117311310C>T	uc001egu.3	+	5	990	c.961C>T	c.(961-963)CAC>TAC	p.H321Y		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	321	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	CACACAAGTTCACCAGCAGAA	0.582													62	163					0	0	1	0	0
PTGFRN	5738	broad.mit.edu	37	1	117504152	117504152	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:117504152C>T	uc001egv.1	+	5	1638	c.1501C>T	c.(1501-1503)CGG>TGG	p.R501W		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	501	Extracellular (Potential).|Ig-like C2-type 4.					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		GTTCAATTTCCGGATCCAAAG	0.483													35	91					0	0	1	0	0
PTGFRN	5738	broad.mit.edu	37	1	117509617	117509617	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:117509617C>T	uc001egv.1	+	6	1861	c.1724C>T	c.(1723-1725)TCC>TTC	p.S575F		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	575	Ig-like C2-type 5.|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		AAAGTATCTTCCAAGAATATT	0.478													12	56					0	0	1	0	0
VTCN1	79679	broad.mit.edu	37	1	117699466	117699466	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:117699466C>T	uc001ehb.2	-	3	247	c.175G>A	c.(175-177)GAA>AAA	p.E59K	VTCN1_uc001ehc.2_5'UTR|VTCN1_uc009whf.1_Intron	NM_024626	NP_078902	Q7Z7D3	VTCN1_HUMAN	V-set domain containing T cell activation	59	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane					0	Lung SC(450;0.225)	all_cancers(81;6.05e-06)|all_epithelial(167;5.59e-07)|all_lung(203;2.85e-06)|Lung NSC(69;2e-05)		Lung(183;0.0664)|LUSC - Lung squamous cell carcinoma(189;0.214)|Colorectal(144;0.23)		ATGTCAGGTTCAAAAGTGCAG	0.478													22	81					0	0	1	0	0
VTCN1	79679	broad.mit.edu	37	1	117712753	117712753	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:117712753G>A	uc001ehb.2	-	2	145	c.73C>T	c.(73-75)CTC>TTC	p.L25F	VTCN1_uc001ehc.2_5'UTR|VTCN1_uc009whf.1_Missense_Mutation_p.L25F	NM_024626	NP_078902	Q7Z7D3	VTCN1_HUMAN	V-set domain containing T cell activation	25	Extracellular (Potential).					integral to membrane|plasma membrane					0	Lung SC(450;0.225)	all_cancers(81;6.05e-06)|all_epithelial(167;5.59e-07)|all_lung(203;2.85e-06)|Lung NSC(69;2e-05)		Lung(183;0.0664)|LUSC - Lung squamous cell carcinoma(189;0.214)|Colorectal(144;0.23)		CCAATGATGAGTGCAATTGCT	0.358													50	115					0	0	1	0	0
FAM46C	54855	broad.mit.edu	37	1	118166571	118166571	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:118166571C>T	uc001ehe.2	+	2	1280	c.1081C>T	c.(1081-1083)CCT>TCT	p.P361S		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	361											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		CCAGCCGGCCCCTTACGTCAG	0.562										Multiple Myeloma(3;1.13e-06)			7	40					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118574371	118574371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:118574371C>T	uc001ehk.2	-	25	3621	c.3553G>A	c.(3553-3555)GAA>AAA	p.E1185K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1185						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TTGGGTTTTTCTTTGCCTTTT	0.383													29	126					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118596651	118596651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:118596651G>A	uc001ehk.2	-	20	2856	c.2788C>T	c.(2788-2790)CCT>TCT	p.P930S		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	930						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		AAAATGAAAGGAATCTTTTCC	0.199													6	36					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118598527	118598527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:118598527C>T	uc001ehk.2	-	19	2619	c.2551G>A	c.(2551-2553)GAA>AAA	p.E851K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	851						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GCAACAAGTTCCAAATAATTC	0.318													28	63					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118624248	118624248	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:118624248C>T	uc001ehk.2	-	14	1848	c.1780G>A	c.(1780-1782)GAA>AAA	p.E594K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	594						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CGTTCTACTTCATTCCAGCTC	0.458													31	102					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118629336	118629336	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:118629336C>T	uc001ehk.2	-	12	1637	c.1569G>A	c.(1567-1569)CTG>CTA	p.L523L		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	523						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CATGATAGTTCAGTAGGAGGG	0.378													45	98					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118629401	118629401	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:118629401G>A	uc001ehk.2	-	12	1572	c.1504C>T	c.(1504-1506)CAT>TAT	p.H502Y		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	502						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		AATATGTCATGAAGATTCTAT	0.388													35	88					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119427392	119427393	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119427392_119427393GG>AA	uc001ehl.1	-	8	1768_1769	c.1453_1454CC>TT	c.(1453-1455)CCA>TTA	p.P485L	TBX15_uc009whj.1_Missense_Mutation_p.P309L	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	591						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GGAGGAGCCTGGAACTGCCCCA	0.559													28	88					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119427635	119427635	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119427635G>A	uc001ehl.1	-	8	1526	c.1211C>T	c.(1210-1212)TCC>TTC	p.S404F	TBX15_uc009whj.1_Missense_Mutation_p.S228F	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	510						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GTTGTGAAGGGAGAAGGCATT	0.527													20	35					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119427641	119427641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119427641G>A	uc001ehl.1	-	8	1520	c.1205C>T	c.(1204-1206)GCC>GTC	p.A402V	TBX15_uc009whj.1_Missense_Mutation_p.A226V	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	508						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		AAGGGAGAAGGCATTGTAGGA	0.537													13	38					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119427724	119427724	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119427724G>A	uc001ehl.1	-	8	1437	c.1122C>T	c.(1120-1122)GTC>GTT	p.V374V	TBX15_uc009whj.1_Silent_p.V198V	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	480						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CTGCCTGCATGACATACTGAA	0.567													12	28					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119428057	119428057	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119428057G>A	uc001ehl.1	-	8	1104	c.789C>T	c.(787-789)TCC>TCT	p.S263S	TBX15_uc009whj.1_Silent_p.S87S	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	369						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GAGGAGAACAGGATGGAGATA	0.498													7	19					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119441727	119441727	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119441727C>T	uc001ehl.1	-	7	945	c.630G>A	c.(628-630)ATG>ATA	p.M210I	TBX15_uc009whj.1_Missense_Mutation_p.M1I	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	316						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CATATGTCTCCATGATGGCTT	0.468													18	44					0	0	1	0	0
HAO2	51179	broad.mit.edu	37	1	119923749	119923749	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119923749G>A	uc001ehq.1	+	3	393	c.41G>A	c.(40-42)CGA>CAA	p.R14Q	HAO2_uc001ehr.1_Missense_Mutation_p.R14Q	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	14	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		GCCCATGCGCGAGAGCAGCTG	0.468													63	154					0	0	1	0	0
HAO2	51179	broad.mit.edu	37	1	119927487	119927487	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119927487C>T	uc001ehq.1	+	5	724	c.372C>T	c.(370-372)CTC>CTT	p.L124L	HAO2_uc001ehr.1_Silent_p.L124L	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	124	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		CCGAAGGCCTCCGATGGTTCC	0.488													15	126					0	0	1	0	0
HAO2	51179	broad.mit.edu	37	1	119929406	119929406	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119929406C>T	uc001ehq.1	+	6	1075	c.723C>T	c.(721-723)ATC>ATT	p.I241I	HAO2_uc001ehr.1_Silent_p.I241I	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	241	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		TCCAGGGTATCATTGTTTCCA	0.393													33	95					0	0	1	0	0
HAO2	51179	broad.mit.edu	37	1	119934769	119934770	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119934769_119934770GG>AA	uc001ehq.1	+	7	1160_1161	c.808_809GG>AA	c.(808-810)GGG>AAG	p.G270K	HAO2_uc001ehr.1_Missense_Mutation_p.G270K	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	270	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		TGCTGTAAAGGGGAAAATTGAA	0.49													15	64					0	0	1	0	0
HSD3B2	3284	broad.mit.edu	37	1	119958174	119958174	+	Silent	SNP	G	A	A	rs111333222	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119958174G>A	uc001ehs.2	+	1	905	c.132G>A	c.(130-132)GAG>GAA	p.E44E	HSD3B2_uc001eht.2_Silent_p.E44E|HSD3B2_uc001ehu.2_Silent_p.E44E	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	44					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	AATTGAGAGAGGAATTTTCTA	0.498													41	102					0	0	1	0	0
HSD3B2	3284	broad.mit.edu	37	1	119962183	119962183	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119962183C>T	uc001ehs.2	+	2	1058	c.285C>T	c.(283-285)TCC>TCT	p.S95S	HSD3B2_uc001eht.2_Silent_p.S95S|HSD3B2_uc001ehu.2_Silent_p.S95S	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	95					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	ACAGAGAGTCCATCATGAATG	0.463													33	62					0	0	1	0	0
HSD3B2	3284	broad.mit.edu	37	1	119964551	119964551	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119964551G>A	uc001ehs.2	+	3	1200	c.427G>A	c.(427-429)GAA>AAA	p.E143K	HSD3B2_uc001eht.2_Missense_Mutation_p.E143K|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	143					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	CGGCCACGAAGAAGAGCCTCT	0.527													32	146					0	0	1	0	0
HSD3B2	3284	broad.mit.edu	37	1	119964834	119964834	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119964834G>A	uc001ehs.2	+	3	1483	c.710G>A	c.(709-711)AGG>AAG	p.R237K	HSD3B2_uc001eht.2_Missense_Mutation_p.R237K|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	237			Missing (in AH2; activity abolished).		androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	CTGGCCTTGAGGGCTCTGCGG	0.507													12	94					0	0	1	0	0
HSD3B2	3284	broad.mit.edu	37	1	119985684	119985684	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:119985684G>A	uc001ehu.2	+	4	633	c.491G>A	c.(490-492)GGA>GAA	p.G164E				P26439	3BHS2_HUMAN	RecName: Full=3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2; AltName: Full=3-beta-HSD II; Includes:   RecName: Full=3-beta-hydroxy-Delta(5)-steroid dehydrogenase;            EC=1.1.1.145;   AltName: Full=3-beta-hydroxy-5-ene steroid dehydrogenase;   AltName: Full=Progesterone reductase; Includes:   RecName: Full=Steroid Delta-isomerase;            EC=5.3.3.1;   AltName: Full=Delta-5-3-ketosteroid isomerase;	Error:Variant_position_missing_in_P26439_after_alignment					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	GCCTGGGGAGGAGATAAAGCA	0.483													8	28					0	0	1	0	0
PHGDH	26227	broad.mit.edu	37	1	120279789	120279789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120279789C>T	uc001ehz.2	+	8	1072	c.845C>T	c.(844-846)CCC>CTC	p.P282L	PHGDH_uc009whm.2_Missense_Mutation_p.P180L|PHGDH_uc001eia.2_Missense_Mutation_p.P282L|PHGDH_uc009whn.2_Missense_Mutation_p.P282L|PHGDH_uc001eib.2_Missense_Mutation_p.P248L	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	282					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	ATCAGCTGTCCCCACCTGGGT	0.592													16	35					0	0	1	0	0
HMGCS2	3158	broad.mit.edu	37	1	120301848	120301848	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120301848G>A	uc001eid.2	-	4	794	c.743C>T	c.(742-744)TCG>TTG	p.S248L	HMGCS2_uc010oxj.1_Missense_Mutation_p.S206L|HMGCS2_uc001eie.2_Missense_Mutation_p.S156L	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	248					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TGGGTACTCCGAGGCCAAATT	0.468													36	69					0	0	1	0	0
NBPF7	343505	broad.mit.edu	37	1	120378788	120378788	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120378788G>A	uc010oxk.1	-	7	1579	c.958C>T	c.(958-960)CCG>TCG	p.P320S		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	320	NBPF 2.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		CTTTCCTCCGGGGAGTCCTGC	0.483													28	72					0	0	1	0	0
NBPF7	343505	broad.mit.edu	37	1	120381888	120381888	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120381888C>T	uc010oxk.1	-	5	1378	c.757G>A	c.(757-759)GAA>AAA	p.E253K		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	253	NBPF 1.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		ACTTTGTCTTCCTCAGATGTG	0.443													87	187					0	0	1	0	0
ADAM30	11085	broad.mit.edu	37	1	120437486	120437486	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120437486C>T	uc001eij.2	-	1	1628	c.1474G>A	c.(1474-1476)GAA>AAA	p.E492K		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	492	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CAACGGCCTTCATACTTGCAA	0.488													26	44					0	0	1	0	0
ADAM30	11085	broad.mit.edu	37	1	120437709	120437709	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120437709G>A	uc001eij.2	-	1	1405	c.1251C>T	c.(1249-1251)TCC>TCT	p.S417S		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	417	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		ACTCCTCTGTGGAACCACAGT	0.438													50	155					0	0	1	0	0
ADAM30	11085	broad.mit.edu	37	1	120438859	120438859	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120438859G>A	uc001eij.2	-	1	255	c.101C>T	c.(100-102)CCT>CTT	p.P34L		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	34					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CTCCCCTTCAGGGTGAAAAAT	0.512													10	55					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120458025	120458025	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120458025G>A	uc001eik.2	-	34	7576	c.7320C>T	c.(7318-7320)ACC>ACT	p.T2440T		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2440	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TAGGGCTGGTGGTCACATCTG	0.582			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				22	110					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120464920	120464920	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120464920G>A	uc001eik.2	-	28	5408	c.5152C>T	c.(5152-5154)CGC>TGC	p.R1718C		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1718	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCATCTCGGCGAAGAGTGAAA	0.483			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				17	67					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120491725	120491725	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120491725G>A	uc001eik.2	-	16	2760	c.2504C>T	c.(2503-2505)GCT>GTT	p.A835V	NOTCH2_uc001eil.2_Missense_Mutation_p.A835V	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	835	Extracellular (Potential).|EGF-like 22.				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGAACAGGGAGCCAATACTGT	0.413			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome		OREG0013733	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	95					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120512162	120512162	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120512162G>A	uc001eik.2	-	6	1336	c.1080C>T	c.(1078-1080)TTC>TTT	p.F360F	NOTCH2_uc001eil.2_Silent_p.F360F|NOTCH2_uc001eim.3_Silent_p.F277F	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	360	Extracellular (Potential).|EGF-like 9; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACATGCAAGAGAAGGAGGCCA	0.562			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				4	37					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120539917	120539917	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120539917G>A	uc001eik.2	-	4	710	c.454C>T	c.(454-456)CCC>TCC	p.P152S	NOTCH2_uc001eil.2_Missense_Mutation_p.P152S|NOTCH2_uc001eim.3_Missense_Mutation_p.P69S	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	152	Extracellular (Potential).|EGF-like 4.				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTGCACAGGGATGAGACAGG	0.498			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				33	131					0	0	1	0	0
HIST2H2BA	337875	broad.mit.edu	37	1	120906269	120906269	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:120906269G>A	uc001eio.2	+	1		c.236G>A				NR_027337				Homo sapiens histone cluster 2, H2ba, mRNA (cDNA clone IMAGE:40032208).												0						CGCATCGCGGGAGAGGCGTCC	0.642													36	105					0	0	1	0	0
LOC647121	647121	broad.mit.edu	37	1	121306489	121306489	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:121306489G>A	uc009wht.1	+	1	66	c.37G>A	c.(37-39)GAA>AAA	p.E13K	LOC647121_uc001eiu.1_RNA					Homo sapiens cDNA FLJ46881 fis, clone UTERU3015647, moderately similar to Embigin precursor.												0						ATATGCTAATGAAACAAAGCT	0.363													21	49					0	0	1	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767608	143767608	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:143767608C>A	uc001ejt.2	-	1	274	c.241G>T	c.(241-243)GAG>TAG	p.E81*		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	81	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						TCAAATTTCTCCCCATAGATG	0.453													63	245					3.58576e-35	3.60829e-35	1	1	0
PDE4DIP	9659	broad.mit.edu	37	1	144856938	144856938	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:144856938G>A	uc001elw.3	-	40	6838	c.6547C>T	c.(6547-6549)CAC>TAC	p.H2183Y	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.H2077Y|PDE4DIP_uc001elv.3_Missense_Mutation_p.H1190Y	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	2183					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TCATCAATGTGGCCAATGACA	0.517			T	PDGFRB	MPD								8	66					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144857686	144857686	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:144857686G>A	uc001elw.3	-	39	6659	c.6368C>T	c.(6367-6369)TCC>TTC	p.S2123F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.S2017F|PDE4DIP_uc001elv.3_Missense_Mutation_p.S1130F	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	2123					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CAGAGCTGGGGAATTCATACC	0.522			T	PDGFRB	MPD								46	199					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144874791	144874791	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:144874791G>A	uc001elw.3	-	30	5108	c.4817C>T	c.(4816-4818)TCT>TTT	p.S1606F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.S1562F|PDE4DIP_uc001elv.3_Missense_Mutation_p.S613F	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1606	NBPF.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GCTGCTGGGAGAGCGGTGGGA	0.547			T	PDGFRB	MPD								29	328					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144882455	144882455	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:144882455A>G	uc001elw.3	-	24	3855	c.3564T>C	c.(3562-3564)GAT>GAC	p.D1188D	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001elv.3_Silent_p.D195D	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1188					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTTGGTGGGCATCCACTGTGA	0.502			T	PDGFRB	MPD								13	71					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144886117	144886117	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:144886117G>A	uc001elw.3	-	23	3408	c.3117C>T	c.(3115-3117)TTC>TTT	p.F1039F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.F1105F|PDE4DIP_uc001elv.3_Silent_p.F46F	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1039	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		ACACTGAGGAGAATCCTGCTT	0.547			T	PDGFRB	MPD								23	109					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144918897	144918897	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:144918897C>T	uc001elw.3	-	10	1580	c.1289G>A	c.(1288-1290)CGA>CAA	p.R430Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R496Q|PDE4DIP_uc001emc.1_Missense_Mutation_p.R430Q|PDE4DIP_uc001emd.1_Missense_Mutation_p.R430Q|PDE4DIP_uc001emb.1_Missense_Mutation_p.R593Q|PDE4DIP_uc001eme.1_5'UTR|PDE4DIP_uc001emf.1_Missense_Mutation_p.R217Q	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	430	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTCCTGGGTTCGAATCTCATT	0.438			T	PDGFRB	MPD								86	749					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144994716	144994716	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:144994716G>A	uc001elw.3	-	1	307	c.16C>T	c.(16-18)CGC>TGC	p.R6C	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Missense_Mutation_p.R6C|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001emc.1_Missense_Mutation_p.R6C|PDE4DIP_uc001emd.1_Missense_Mutation_p.R6C|PDE4DIP_uc001emg.1_Missense_Mutation_p.R6C|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	6					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GACAGAGTGCGATATCCATTA	0.567			T	PDGFRB	MPD								11	125					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	145075737	145075737	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145075737G>A	uc001emh.2	-	1	343	c.126C>T	c.(124-126)TCC>TCT	p.S42S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elo.2_Silent_p.S42S|PDE4DIP_uc001emk.2_Silent_p.S42S	NM_022359	NP_071754	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TCTGCCGTGGGGACTGAGGGG	0.736			T	PDGFRB	MPD								12	109					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	145075750	145075750	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145075750C>T	uc001emh.2	-	1	330	c.113G>A	c.(112-114)CGA>CAA	p.R38Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elo.2_Missense_Mutation_p.R38Q|PDE4DIP_uc001emk.2_Missense_Mutation_p.R38Q	NM_022359	NP_071754	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTGAGGGGTTCGCGTCGCGTC	0.731			T	PDGFRB	MPD								17	102					0	0	1	0	0
SEC22B	9554	broad.mit.edu	37	1	145103957	145103957	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145103957G>A	uc001eml.1	+	4	265	c.125G>A	c.(124-126)CGA>CAA	p.R42Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron	NM_004892	NP_004883	O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B	42	Longin.|Cytoplasmic (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding				0						TAACTCTTTCGAAAGTTGAAT	0.393													6	38					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145303970	145303970	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145303970C>T	uc001end.3	+	9	1402	c.1367C>T	c.(1366-1368)TCA>TTA	p.S456L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Missense_Mutation_p.S387L|NBPF9_uc010oyg.1_Missense_Mutation_p.S421L|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_5'UTR|NBPF10_uc001emq.1_Missense_Mutation_p.S185L	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GTGCAGAAATCATCTGCCCCC	0.438													56	353					0	0	1	0	0
HFE2	148738	broad.mit.edu	37	1	145415632	145415632	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145415632G>A	uc001eni.2	+	3	776	c.451G>A	c.(451-453)GAA>AAA	p.E151K	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_Missense_Mutation_p.E38K|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	151					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TTGTGACTATGAAGGCCGGTT	0.587													8	35					0	0	1	0	0
HFE2	148738	broad.mit.edu	37	1	145415657	145415657	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145415657G>A	uc001eni.2	+	3	801	c.476G>A	c.(475-477)GGT>GAT	p.G159D	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_Missense_Mutation_p.G46D|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	159					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CGGCTGCATGGTCGTCCCCCG	0.577													14	46					0	0	1	0	0
HFE2	148738	broad.mit.edu	37	1	145416700	145416700	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145416700G>A	uc001eni.2	+	4	1370	c.1045G>A	c.(1045-1047)GAA>AAA	p.E349K	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Missense_Mutation_p.E123K|HFE2_uc001enk.2_Missense_Mutation_p.E236K|HFE2_uc001enl.2_Missense_Mutation_p.E123K	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	349					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCTGTGCAAGGAAGGGCTTCC	0.527													16	47					0	0	1	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145473840	145473840	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145473840C>T	uc001enq.1	+	4	1805	c.512C>T	c.(511-513)CCT>CTT	p.P171L	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	171											0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GTGGAGGACCCTGCTCCCGCC	0.627													15	80					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145561502	145561502	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145561502C>T	uc001eob.1	+	10	1298	c.1190C>T	c.(1189-1191)CCA>CTA	p.P397L	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.P240L	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	397										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					ACAGTAAATCCAGTATTAGCT	0.552													18	54					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562487	145562487	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145562487C>T	uc001eob.1	+	10	2283	c.2175C>T	c.(2173-2175)TCC>TCT	p.S725S	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.S568S	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	725										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAGCGGAGTCCCTGGAGGAGC	0.667													3	18					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562712	145562712	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145562712G>A	uc001eob.1	+	10	2508	c.2400G>A	c.(2398-2400)ATG>ATA	p.M800I	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.M643I	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	800	Potential.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGGCCACGATGAGCGGGAAGA	0.637													9	25					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562977	145562977	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:145562977G>A	uc001eob.1	+	10	2773	c.2665G>A	c.(2665-2667)GCC>ACC	p.A889T	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.A732T	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	889	Potential.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CGCTCAGGCAGCCGAACAAGA	0.647													15	38					0	0	1	0	0
PRKAB2	5565	broad.mit.edu	37	1	146634146	146634146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:146634146G>A	uc001epe.2	-	6	690	c.545C>T	c.(544-546)TCC>TTC	p.S182F	PRKAB2_uc010ozm.1_Missense_Mutation_p.S100F|PRKAB2_uc010ozn.1_Missense_Mutation_p.P60S|PRKAB2_uc009wjf.1_Missense_Mutation_p.S182F	NM_005399	NP_005390	O43741	AAKB2_HUMAN	AMP-activated protein kinase beta 2	182					carnitine shuttle|cell cycle arrest|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm				lung(2)|skin(1)	3	all_hematologic(923;0.0487)				Adenosine monophosphate(DB00131)	GGGTGAGCTGGAAAGGTCTGA	0.393													7	37					0	0	1	0	0
PRKAB2	5565	broad.mit.edu	37	1	146638497	146638497	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:146638497G>A	uc001epe.2	-	4	490	c.345C>T	c.(343-345)ATC>ATT	p.I115I	PRKAB2_uc010ozm.1_Silent_p.I33I|PRKAB2_uc010ozn.1_Silent_p.I33I|PRKAB2_uc009wjf.1_Silent_p.I115I	NM_005399	NP_005390	O43741	AAKB2_HUMAN	AMP-activated protein kinase beta 2	115					carnitine shuttle|cell cycle arrest|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm				lung(2)|skin(1)	3	all_hematologic(923;0.0487)				Adenosine monophosphate(DB00131)	GGAGGTCCAGGATGGCAACAA	0.438													9	43					0	0	1	0	0
PDIA3P	171423	broad.mit.edu	37	1	146649854	146649854	+	Silent	SNP	C	T	T	rs1053423		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:146649854C>T	uc001epg.1	+	1	425	c.162C>T	c.(160-162)GCC>GCT	p.A54A		NR_002305				SubName: Full=cDNA FLJ53558, highly similar to Protein disulfide-isomerase A3 (EC 5.3.4.1);												0						AGTTCTTCGCCCCCTGGTGTG	0.567													10	111					0	0	1	0	0
FMO5	2330	broad.mit.edu	37	1	146684103	146684103	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:146684103C>T	uc001epi.2	-	5	877	c.488G>A	c.(487-489)GGA>GAA	p.G163E	FMO5_uc001eph.3_Missense_Mutation_p.G163E|FMO5_uc001epj.2_Missense_Mutation_p.G163E|FMO5_uc001epk.3_Missense_Mutation_p.G163E	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	163						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					CTTCTCAATTCCTGCAAGAGA	0.353													10	113					0	0	1	0	0
ACP6	51205	broad.mit.edu	37	1	147122011	147122011	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:147122011G>A	uc001epr.2	-	8	1376	c.912C>T	c.(910-912)TTC>TTT	p.F304F	ACP6_uc009wjj.1_3'UTR	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	304					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					GGATGTGGAGGAATGGGCCTA	0.522													23	45					0	0	1	0	0
GJA5	2702	broad.mit.edu	37	1	147230462	147230462	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:147230462G>A	uc001eps.1	-	2	1026	c.885C>T	c.(883-885)AAC>AAT	p.N295N	GJA5_uc001ept.1_Silent_p.N295N	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	295	Cytoplasmic (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			CGGTGACCAGGTTGTCTGTGT	0.532													31	133					0	0	1	0	0
GJA5	2702	broad.mit.edu	37	1	147230687	147230687	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:147230687G>A	uc001eps.1	-	2	801	c.660C>T	c.(658-660)CTC>CTT	p.L220L	GJA5_uc001ept.1_Silent_p.L220L	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	220	Helical; (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			CCAGGCTAAGGAGGAGGGACA	0.562													19	24					0	0	1	0	0
GJA8	2703	broad.mit.edu	37	1	147380736	147380736	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:147380736C>T	uc001epu.1	+	2	717	c.654C>T	c.(652-654)TTC>TTT	p.F218F		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	218	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					TGTCCCTATTCCTCAACGTGA	0.592													23	69					0	0	1	0	0
GJA8	2703	broad.mit.edu	37	1	147381070	147381070	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:147381070G>A	uc001epu.1	+	2	1051	c.988G>A	c.(988-990)GAA>AAA	p.E330K		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	330	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GGGGGCACAAGAAGTGGAGGG	0.617													3	17					0	0	1	0	0
GJA8	2703	broad.mit.edu	37	1	147381126	147381126	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:147381126G>A	uc001epu.1	+	2	1107	c.1044G>A	c.(1042-1044)GAG>GAA	p.E348E		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	348	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					AGGTGGGAGAGAAGAAGGAGG	0.637													3	10					0	0	1	0	0
LOC645166	645166	broad.mit.edu	37	1	148932900	148932900	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:148932900G>A	uc010pbc.1	+	2		c.215G>A			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						TCAGTCTGCGGCCAAGACTCC	0.612													8	146					0	0	1	0	0
FCGR1A	2209	broad.mit.edu	37	1	149759987	149759987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149759987C>T	uc001esp.3	+	4	423	c.373C>T	c.(373-375)CAT>TAT	p.H125Y	HIST2H2BF_uc010pbj.1_Intron|FCGR1A_uc009wlg.2_RNA|FCGR1A_uc009wlh.1_RNA	NM_000566	NP_000557	P12314	FCGR1_HUMAN	Fc fragment of IgG, high affinity Ia, receptor	125	Ig-like C2-type 2.|Extracellular (Potential).				interferon-gamma-mediated signaling pathway|phagocytosis, engulfment	integral to membrane|plasma membrane	IgG binding|receptor activity|receptor signaling protein activity			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)				Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Methyl aminolevulinate(DB00992)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Porfimer(DB00707)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CTTGAGGTGTCATGCGTGGAA	0.438													10	123					0	0	1	0	0
SV2A	9900	broad.mit.edu	37	1	149878254	149878254	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149878254C>T	uc001etg.2	-	11	2324	c.1833G>A	c.(1831-1833)GGG>GGA	p.G611G	SV2A_uc009wlk.2_Silent_p.G63G|SV2A_uc001eth.2_Silent_p.G611G	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	611	Helical; (Potential).			G -> R (in Ref. 3; BAC11645).	neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	ACACGATATTCCCAGGAAGCA	0.577													17	75					0	0	1	0	0
SV2A	9900	broad.mit.edu	37	1	149879672	149879672	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149879672C>T	uc001etg.2	-	9	1957	c.1466G>A	c.(1465-1467)GGG>GAG	p.G489E	SV2A_uc009wlk.2_5'Flank|SV2A_uc001eth.2_Missense_Mutation_p.G489E	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	489	Extracellular (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TACGCGCTCCCCGGGGAACAC	0.517													49	134					0	0	1	0	0
SV2A	9900	broad.mit.edu	37	1	149879693	149879693	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149879693G>A	uc001etg.2	-	9	1936	c.1445C>T	c.(1444-1446)TCC>TTC	p.S482F	SV2A_uc009wlk.2_5'Flank|SV2A_uc001eth.2_Missense_Mutation_p.S482F	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	482	Extracellular (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TTTGGTGCGGGATGCGTAGTC	0.527													47	155					0	0	1	0	0
SV2A	9900	broad.mit.edu	37	1	149882467	149882467	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149882467C>T	uc001etg.2	-	4	1357	c.866G>A	c.(865-867)CGA>CAA	p.R289Q	SV2A_uc001eth.2_Missense_Mutation_p.R289Q	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	289	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	ATGCTCCCCTCGTTTCTCCTG	0.527													8	44					0	0	1	0	0
SV2A	9900	broad.mit.edu	37	1	149882491	149882491	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149882491G>A	uc001etg.2	-	4	1333	c.842C>T	c.(841-843)TCC>TTC	p.S281F	SV2A_uc001eth.2_Missense_Mutation_p.S281F	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	281	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	CAGAAACTCGGAGAAATAGGA	0.527													7	58					0	0	1	0	0
SV2A	9900	broad.mit.edu	37	1	149883447	149883447	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149883447G>A	uc001etg.2	-	3	1199	c.708C>T	c.(706-708)CTC>CTT	p.L236L	SV2A_uc001eth.2_Silent_p.L236L	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	236	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	AGAGCGAGATGAGCAGACACT	0.587													15	51					0	0	1	0	0
SV2A	9900	broad.mit.edu	37	1	149884829	149884829	+	Silent	SNP	G	A	A	rs144646284	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149884829G>A	uc001etg.2	-	2	1055	c.564C>T	c.(562-564)TTC>TTT	p.F188F	SV2A_uc001eth.2_Silent_p.F188F	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	188	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TGGGCAGCACGAAGCCCACCA	0.582													29	100					0	0	1	0	0
SF3B4	10262	broad.mit.edu	37	1	149899118	149899118	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149899118G>A	uc001etj.1	-	2	154	c.103C>T	c.(103-105)CAG>TAG	p.Q35*	SF3B4_uc001eti.1_5'Flank|SF3B4_uc001etk.1_Nonsense_Mutation_p.Q35*|SF3B4_uc009wll.1_Nonsense_Mutation_p.Q35*	NM_005850	NP_005841	Q15427	SF3B4_HUMAN	splicing factor 3b, subunit 4	35	RRM 1.					nucleoplasm|U12-type spliceosomal complex	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Breast(34;0.0009)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			GGTCCAGCCTGGAGAAACAGT	0.562													15	83					0	0	1	0	0
MTMR11	10903	broad.mit.edu	37	1	149901663	149901663	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149901663G>A	uc001etl.3	-	16	2044	c.1793C>T	c.(1792-1794)TCC>TTC	p.S598F	SF3B4_uc001etj.1_5'Flank|SF3B4_uc001etk.1_5'Flank|SF3B4_uc009wll.1_5'Flank|MTMR11_uc001etm.1_Missense_Mutation_p.S526F	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	598	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			GCTTTCAGAGGAGATAGCAGG	0.602													25	74					0	0	1	0	0
MTMR11	10903	broad.mit.edu	37	1	149903251	149903251	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149903251G>A	uc001etl.3	-	13	1442	c.1191C>T	c.(1189-1191)GCC>GCT	p.A397A	MTMR11_uc001etm.1_Silent_p.A325A|MTMR11_uc010pbm.1_Intron|MTMR11_uc010pbn.1_Missense_Mutation_p.P224S	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	397	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			ACAGTGTTCGGGCTTCGGGGG	0.567													12	79					0	0	1	0	0
MTMR11	10903	broad.mit.edu	37	1	149905338	149905338	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149905338G>A	uc001etl.3	-	10	1197	c.946C>T	c.(946-948)CAA>TAA	p.Q316*	MTMR11_uc001etm.1_Nonsense_Mutation_p.Q244*|MTMR11_uc010pbm.1_Nonsense_Mutation_p.Q288*|MTMR11_uc010pbn.1_Nonsense_Mutation_p.Q158*	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	316	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			TGGGCAAGTTGGACATCTGCA	0.582													40	93					0	0	1	0	0
MTMR11	10903	broad.mit.edu	37	1	149906993	149906993	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149906993G>A	uc001etl.3	-	5	605	c.354C>T	c.(352-354)CTC>CTT	p.L118L	MTMR11_uc001etm.1_Silent_p.L46L|MTMR11_uc010pbm.1_Silent_p.L90L|MTMR11_uc010pbn.1_5'UTR	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	118							phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			ACCCTGGACGGAGGAGCTGGA	0.547													28	87					0	0	1	0	0
OTUD7B	56957	broad.mit.edu	37	1	149916067	149916067	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:149916067G>A	uc001etn.2	-	12	2577	c.2221C>T	c.(2221-2223)CCC>TCC	p.P741S		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	741					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			TCCTGGTGGGGGTAGGGTCGC	0.637													24	40					0	0	1	0	0
VPS45	11311	broad.mit.edu	37	1	150065671	150065671	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150065671C>T	uc001etp.2	+	13	1993	c.1420C>T	c.(1420-1422)CTG>TTG	p.L474L	VPS45_uc010pbp.1_RNA|VPS45_uc010pbq.1_Silent_p.L438L|VPS45_uc010pbs.1_Silent_p.L369L|VPS45_uc001etq.2_Silent_p.L294L|VPS45_uc009wlm.1_Silent_p.L450L	NM_007259	NP_009190	Q9NRW7	VPS45_HUMAN	vacuolar protein sorting 45A	474					blood coagulation|intracellular protein transport|vesicle docking involved in exocytosis	endosome membrane|Golgi membrane|integral to membrane of membrane fraction				central_nervous_system(1)|skin(1)	2	Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			ACATGAAACCCTGGATCATCT	0.373													43	89					0	0	1	0	0
C1orf51	148523	broad.mit.edu	37	1	150255959	150255959	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150255959G>A	uc001euh.2	+	2	418	c.282G>A	c.(280-282)GCG>GCA	p.A94A	C1orf51_uc001eui.2_Silent_p.A6A|C1orf51_uc001euj.2_Silent_p.A94A	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	94											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			GATCTGGGGCGAAAAGATCAA	0.527													48	118					0	0	1	0	0
C1orf51	148523	broad.mit.edu	37	1	150259114	150259114	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150259114C>T	uc001euh.2	+	6	1042	c.906C>T	c.(904-906)CCC>CCT	p.P302P	C1orf51_uc001eui.2_Silent_p.P214P|C1orf51_uc001euj.2_Silent_p.P302P	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	302											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			GAGTGCAACCCTTCACCCACT	0.557													17	168					0	0	1	0	0
PRPF3	9129	broad.mit.edu	37	1	150316934	150316934	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150316934C>T	uc001eum.3	+	12	1713	c.1551C>T	c.(1549-1551)GCC>GCT	p.A517A	PRPF3_uc009wlp.2_RNA|PRPF3_uc010pca.1_Silent_p.A476A|PRPF3_uc010pcb.1_Silent_p.A468A|PRPF3_uc009wlq.1_RNA	NM_004698	NP_004689	O43395	PRPF3_HUMAN	PRP3 pre-mRNA processing factor 3 homolog	517					nuclear mRNA splicing, via spliceosome	Cajal body|cytoplasm|nuclear speck|spliceosomal complex	protein binding			ovary(1)	1	Lung NSC(24;5.57e-29)|Breast(34;0.000844)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)	Colorectal(1306;0.0149)		CCAACGCTGCCCGAAAACTCA	0.468													7	133					0	0	1	0	0
RPRD2	23248	broad.mit.edu	37	1	150432701	150432701	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150432701C>T	uc009wlr.2	+	9	1520	c.1319C>T	c.(1318-1320)TCC>TTC	p.S440F	RPRD2_uc010pcc.1_Missense_Mutation_p.S414F|RPRD2_uc001eup.3_Missense_Mutation_p.S414F	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	440							protein binding			ovary(1)	1						CTTTCCCCTTCCCCAGCATTG	0.448													10	24					0	0	1	0	0
RPRD2	23248	broad.mit.edu	37	1	150443463	150443463	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150443463C>T	uc009wlr.2	+	11	2240	c.2039C>T	c.(2038-2040)CCT>CTT	p.P680L	RPRD2_uc010pcc.1_Missense_Mutation_p.P654L|RPRD2_uc001eup.3_Missense_Mutation_p.P654L	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	680	Ser-rich.						protein binding			ovary(1)	1						AAAGGTAATCCTGGTTTCAGT	0.507													29	64					0	0	1	0	0
RPRD2	23248	broad.mit.edu	37	1	150445091	150445091	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150445091C>T	uc009wlr.2	+	11	3868	c.3667C>T	c.(3667-3669)CAT>TAT	p.H1223Y	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Missense_Mutation_p.H1197Y	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1223	Pro-rich.						protein binding			ovary(1)	1						TCCTAAGGATCATGGTGGTAT	0.572													36	101					0	0	1	0	0
TARS2	80222	broad.mit.edu	37	1	150471471	150471471	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150471471C>T	uc001euq.2	+	12	1507	c.1500C>T	c.(1498-1500)GGC>GGT	p.G500G	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Silent_p.G418G|TARS2_uc009wlt.2_Silent_p.G126G|TARS2_uc009wls.2_Silent_p.G370G	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	500					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	GGCCATCTGGCTTCCTGGGGG	0.562													10	125					0	0	1	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150530026	150530026	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150530026G>A	uc001eux.2	+	13	2340	c.2104G>A	c.(2104-2106)GAA>AAA	p.E702K	ADAMTSL4_uc001euw.2_Missense_Mutation_p.E702K|ADAMTSL4_uc009wlw.2_Missense_Mutation_p.E725K|ADAMTSL4_uc010pcg.1_Missense_Mutation_p.E663K|ADAMTSL4_uc009wlx.2_5'Flank	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	702					apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GGAACTGGATGAACGCAGCTG	0.672													5	8					0	0	1	0	0
HORMAD1	84072	broad.mit.edu	37	1	150672595	150672595	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150672595C>T	uc001evk.1	-	14	1203	c.1097G>A	c.(1096-1098)GGG>GAG	p.G366E	GOLPH3L_uc001evj.2_5'Flank|GOLPH3L_uc010pci.1_5'Flank|HORMAD1_uc001evl.1_Missense_Mutation_p.G359E|HORMAD1_uc001evm.1_Missense_Mutation_p.G286E	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	366					blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			TACTATTCTCCCAGATTCATG	0.289													8	39					0	0	1	0	0
CTSS	1520	broad.mit.edu	37	1	150722495	150722495	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150722495G>A	uc001evn.2	-	6	913	c.780C>T	c.(778-780)TTC>TTT	p.F260F	CTSS_uc010pcj.1_Silent_p.F210F|CTSS_uc001evo.1_Silent_p.F260F	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	260					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			TTCTGTAGAGGAAGAAAGAAG	0.308													15	48					0	0	1	0	0
ANXA9	8416	broad.mit.edu	37	1	150955861	150955861	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:150955861C>T	uc001ewa.2	+	4	593	c.123C>T	c.(121-123)TTC>TTT	p.F41F		NM_003568	NP_003559	O76027	ANXA9_HUMAN	annexin A9	41					cell-cell adhesion	cell surface|cytosol	acetylcholine receptor activity|calcium ion binding|calcium-dependent phospholipid binding|phosphatidylserine binding|protein homodimerization activity				0	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TCTTGAACTTCAGCGTGGACA	0.607													7	17					0	0	1	0	0
BNIPL	149428	broad.mit.edu	37	1	151015480	151015480	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151015480G>A	uc001ewl.2	+	5	655	c.482G>A	c.(481-483)AGG>AAG	p.R161K	BNIPL_uc009wmi.2_Missense_Mutation_p.R79K|BNIPL_uc009wmj.2_RNA	NM_138278	NP_612122	Q7Z465	BNIPL_HUMAN	BCL2/adenovirus E1B 19kD interacting protein	161					apoptosis|induction of apoptosis|negative regulation of cell proliferation|regulation of growth rate	cytosol|nucleus	identical protein binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			ACAGCTGAAAGGCTGGGCCGA	0.527													55	105					0	0	1	0	0
SEMA6C	10500	broad.mit.edu	37	1	151105853	151105854	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151105853_151105854GG>AA	uc001ewu.2	-	19	2199_2200	c.1899_1900CC>TT	c.(1897-1902)CACCGA>CATTGA	p.R634*	SEMA6C_uc001ewv.2_Nonsense_Mutation_p.R666*|SEMA6C_uc001eww.2_Nonsense_Mutation_p.R626*|SEMA6C_uc010pcq.1_Intron	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	634	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CCCCGACGTCGGTGGGCGCGGC	0.728													7	15					0	0	1	0	0
SEMA6C	10500	broad.mit.edu	37	1	151105886	151105886	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151105886G>A	uc001ewu.2	-	19	2167	c.1867C>T	c.(1867-1869)CTC>TTC	p.L623F	SEMA6C_uc001ewv.2_Missense_Mutation_p.L655F|SEMA6C_uc001eww.2_Missense_Mutation_p.L615F|SEMA6C_uc010pcq.1_Intron	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	623	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GAGACCAGGAGGCCAGAGACT	0.721													4	15					0	0	1	0	0
SEMA6C	10500	broad.mit.edu	37	1	151108512	151108512	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151108512G>A	uc001ewu.2	-	13	1534	c.1234C>T	c.(1234-1236)CAG>TAG	p.Q412*	SEMA6C_uc001ewv.2_Nonsense_Mutation_p.Q412*|SEMA6C_uc001eww.2_Nonsense_Mutation_p.Q372*|SEMA6C_uc010pcq.1_Nonsense_Mutation_p.Q412*	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	412	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			AGTAGAGGCTGATGGGTGACA	0.557													31	54					0	0	1	0	0
SEMA6C	10500	broad.mit.edu	37	1	151115019	151115019	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151115019G>A	uc001ewu.2	-	3	379	c.79C>T	c.(79-81)CCC>TCC	p.P27S	SEMA6C_uc001ewv.2_Missense_Mutation_p.P27S|SEMA6C_uc001eww.2_Missense_Mutation_p.P27S|SEMA6C_uc010pcq.1_Missense_Mutation_p.P27S|SEMA6C_uc009wml.1_Intron	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	27	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGGTCCTGGGGAAAGGCGGCC	0.607													16	22					0	0	1	0	0
LYSMD1	388695	broad.mit.edu	37	1	151134286	151134286	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151134286G>A	uc001ewy.2	-	2	1107	c.471C>T	c.(469-471)TTC>TTT	p.F157F	LYSMD1_uc010pcr.1_Silent_p.F109F	NM_212551	NP_997716	Q96S90	LYSM1_HUMAN	LysM, putative peptidoglycan-binding, domain	157					cell wall macromolecule catabolic process						0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GCTTCTTAAGGAAATCAGAGG	0.507													60	106					0	0	1	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151205035	151205035	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151205035C>T	uc001exj.2	+	7	947	c.495C>T	c.(493-495)CTC>CTT	p.L165L	PIP5K1A_uc001exi.2_Silent_p.L152L|PIP5K1A_uc010pcu.1_Silent_p.L153L|PIP5K1A_uc001exk.2_Silent_p.L152L|PIP5K1A_uc010pcv.1_5'Flank	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	165	PIPK.				phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			AGTATTCCCTCTGCAGTGAGC	0.428													28	49					0	0	1	0	0
PSMD4	5710	broad.mit.edu	37	1	151238796	151238796	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151238796C>T	uc001exl.2	+	8	838	c.776C>T	c.(775-777)GCC>GTC	p.A259V	PSMD4_uc001exn.2_Missense_Mutation_p.A262V	NM_002810	NP_002801	P55036	PSMD4_HUMAN	proteasome 26S non-ATPase subunit 4	259					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding|zinc ion binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TCAGACGATGCCCTGCTGAAG	0.547													54	133					0	0	1	0	0
ZNF687	57592	broad.mit.edu	37	1	151259552	151259552	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151259552T>A	uc001exq.2	+	2	883	c.785T>A	c.(784-786)TTC>TAC	p.F262Y	ZNF687_uc001exp.1_Missense_Mutation_p.F271Y|ZNF687_uc009wmo.2_Missense_Mutation_p.F262Y|ZNF687_uc009wmp.2_Missense_Mutation_p.F262Y	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	262	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GGGGTGCCCTTCTTCAAGCAG	0.622													31	124					0	0	1	0	0
RFX5	5993	broad.mit.edu	37	1	151315436	151315436	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151315436G>A	uc001exv.1	-	11	1291	c.1077C>T	c.(1075-1077)GCC>GCT	p.A359A	RFX5_uc001exw.1_Silent_p.A359A|RFX5_uc009wmr.1_Silent_p.A359A|RFX5_uc010pcx.1_Silent_p.A319A	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	359						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CCACTTTCAGGGCACCTGAAG	0.592													37	73					0	0	1	0	0
SELENBP1	8991	broad.mit.edu	37	1	151337180	151337180	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151337180C>T	uc001exx.2	-	12	1305	c.1258G>A	c.(1258-1260)GAA>AAA	p.E420K	SELENBP1_uc010pcy.1_Missense_Mutation_p.E462K|SELENBP1_uc001exy.2_Missense_Mutation_p.E317K|SELENBP1_uc001exz.2_Missense_Mutation_p.E317K|SELENBP1_uc010pcz.1_Missense_Mutation_p.E358K|SELENBP1_uc009wms.2_Missense_Mutation_p.E256K|SELENBP1_uc009wmt.2_Missense_Mutation_p.E317K|SELENBP1_uc001eya.2_Missense_Mutation_p.E356K|SELENBP1_uc009wmu.2_3'UTR	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	420					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ACAGAGCCTTCCCTGGTGGAA	0.557													16	156					0	0	1	0	0
SELENBP1	8991	broad.mit.edu	37	1	151339220	151339220	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151339220G>A	uc001exx.2	-	6	689	c.642C>T	c.(640-642)TTC>TTT	p.F214F	SELENBP1_uc010pcy.1_Silent_p.F256F|SELENBP1_uc001exy.2_Silent_p.F111F|SELENBP1_uc001exz.2_Silent_p.F111F|SELENBP1_uc010pcz.1_Silent_p.F152F|SELENBP1_uc009wms.2_Intron|SELENBP1_uc009wmt.2_Silent_p.F111F|SELENBP1_uc001eya.2_Silent_p.F150F|SELENBP1_uc009wmu.2_Silent_p.F111F	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	214					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CAGCGGGGTTGAAGCCATCTC	0.582													50	146					0	0	1	0	0
POGZ	23126	broad.mit.edu	37	1	151400307	151400307	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151400307G>A	uc001eyd.1	-	7	1376	c.1070C>T	c.(1069-1071)TCA>TTA	p.S357L	POGZ_uc001eye.1_Missense_Mutation_p.S304L|POGZ_uc010pdb.1_Missense_Mutation_p.S348L|POGZ_uc001eyf.1_Missense_Mutation_p.S304L|POGZ_uc010pdc.1_Missense_Mutation_p.S295L|POGZ_uc009wmv.1_Missense_Mutation_p.S262L|POGZ_uc010pdd.1_Intron|POGZ_uc001eyg.1_Missense_Mutation_p.S357L	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	357					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ACCTTTCATTGAAGACTCAGG	0.448													6	27					0	0	1	0	0
POGZ	23126	broad.mit.edu	37	1	151400505	151400505	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151400505G>A	uc001eyd.1	-	7	1178	c.872C>T	c.(871-873)CCC>CTC	p.P291L	POGZ_uc001eye.1_Missense_Mutation_p.P238L|POGZ_uc010pdb.1_Intron|POGZ_uc001eyf.1_Missense_Mutation_p.P238L|POGZ_uc010pdc.1_Intron|POGZ_uc009wmv.1_Missense_Mutation_p.P196L|POGZ_uc010pdd.1_Intron|POGZ_uc001eyg.1_Missense_Mutation_p.P291L	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	291					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			AGGTGGAGAGGGGAAGGAGGG	0.517													21	82					0	0	1	0	0
CGN	57530	broad.mit.edu	37	1	151509770	151509770	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151509770C>T	uc009wmw.2	+	21	3704	c.3560C>T	c.(3559-3561)TCG>TTG	p.S1187L	CGN_uc010pde.1_Missense_Mutation_p.S181L	NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	1181	Tail.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			TACGATCCCTCGTCCATTGCA	0.552													19	65					0	0	1	0	0
MRPL9	65005	broad.mit.edu	37	1	151734888	151734888	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151734888G>A	uc001eyv.2	-	3	484	c.399C>T	c.(397-399)TCC>TCT	p.S133S	MRPL9_uc009wmz.2_RNA|MRPL9_uc010pdk.1_Silent_p.S133S|MRPL9_uc009wna.1_3'UTR	NM_031420	NP_113608	Q9BYD2	RM09_HUMAN	mitochondrial ribosomal protein L9 precursor	133					translation	mitochondrial ribosome	structural constituent of ribosome			ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TGTTTTCAGGGGATGCATATA	0.468													19	147					0	0	1	0	0
TDRKH	11022	broad.mit.edu	37	1	151747249	151747249	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151747249G>A	uc009wnb.1	-	12	1752	c.1570C>T	c.(1570-1572)CTC>TTC	p.L524F	TDRKH_uc001eyy.2_Missense_Mutation_p.L300F|TDRKH_uc001ezb.3_Missense_Mutation_p.L520F|TDRKH_uc001ezc.3_Missense_Mutation_p.L479F|TDRKH_uc001eza.3_Missense_Mutation_p.L524F|TDRKH_uc001ezd.3_Missense_Mutation_p.L524F|TDRKH_uc010pdn.1_Missense_Mutation_p.L300F	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	524							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GTCTCAGTGAGCAACGTGCTG	0.468													55	142					0	0	1	0	0
TDRKH	11022	broad.mit.edu	37	1	151751443	151751443	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151751443G>A	uc009wnb.1	-	6	783	c.601C>T	c.(601-603)CGG>TGG	p.R201W	TDRKH_uc001eyy.2_5'UTR|TDRKH_uc001ezb.3_Missense_Mutation_p.R197W|TDRKH_uc001ezc.3_Missense_Mutation_p.R156W|TDRKH_uc001eza.3_Missense_Mutation_p.R201W|TDRKH_uc001ezd.3_Missense_Mutation_p.R201W|TDRKH_uc010pdn.1_5'UTR	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	201							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			ATTCTCTTCCGAAGTTCTTCA	0.453													31	95					0	0	1	0	0
TDRKH	11022	broad.mit.edu	37	1	151751698	151751698	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151751698G>A	uc009wnb.1	-	5	624	c.442C>T	c.(442-444)CGT>TGT	p.R148C	TDRKH_uc001eyy.2_5'UTR|TDRKH_uc001ezb.3_Missense_Mutation_p.R144C|TDRKH_uc001ezc.3_Intron|TDRKH_uc001eza.3_Missense_Mutation_p.R148C|TDRKH_uc001ezd.3_Missense_Mutation_p.R148C|TDRKH_uc010pdn.1_5'UTR	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	148	KH 2.						RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CAGATAGAACGAATTGTCTCG	0.398													23	75					0	0	1	0	0
LINGO4	339398	broad.mit.edu	37	1	151774528	151774528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151774528C>T	uc001ezf.1	-	2	843	c.653G>A	c.(652-654)AGG>AAG	p.R218K		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	218	Extracellular (Potential).|LRR 7.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			AGCTGGCAGCCTCCCAATATC	0.657													26	80					0	0	1	0	0
RORC	6097	broad.mit.edu	37	1	151789722	151789722	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151789722C>T	uc001ezh.2	-	3	213	c.105G>A	c.(103-105)GGG>GGA	p.G35G	RORC_uc001ezg.2_Silent_p.G14G|RORC_uc010pdo.1_Silent_p.G89G|RORC_uc010pdp.1_Silent_p.G35G	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	35	NR C4-type.|Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			ACGACTTGTCCCCACAGATTT	0.498													20	65					0	0	1	0	0
RORC	6097	broad.mit.edu	37	1	151804206	151804206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151804206G>A	uc001ezh.2	-	1	143	c.35C>T	c.(34-36)TCA>TTA	p.S12L	RORC_uc010pdo.1_5'UTR|RORC_uc010pdp.1_Missense_Mutation_p.S12L	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	12	Modulating (Potential).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTTACCCCGTGAGGCTCGGTG	0.637													19	171					0	0	1	0	0
THEM5	284486	broad.mit.edu	37	1	151820663	151820663	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:151820663G>A	uc009wnd.2	-	4	702	c.570C>T	c.(568-570)TTC>TTT	p.F190F		NM_182578	NP_872384	Q8N1Q8	THEM5_HUMAN	thioesterase superfamily member 5	190							hydrolase activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTTACTTTTTGAACCTGATGT	0.562													37	106					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152057759	152057759	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152057759G>A	uc001ezo.1	-	3	2464	c.2399C>T	c.(2398-2400)CCA>CTA	p.P800L		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	800							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CTGGTATAGTGGACTGGAATA	0.488													50	123					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152057846	152057846	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152057846G>A	uc001ezo.1	-	3	2377	c.2312C>T	c.(2311-2313)TCT>TTT	p.S771F		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	771							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GGGGACTGAAGAATTGTGCTC	0.493													26	124					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058960	152058960	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152058960G>A	uc001ezo.1	-	3	1263	c.1198C>T	c.(1198-1200)CAT>TAT	p.H400Y		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	400							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GCTGTTCCATGGGCCTCAGGA	0.473													68	160					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059153	152059153	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152059153T>C	uc001ezo.1	-	3	1070	c.1005A>G	c.(1003-1005)GAA>GAG	p.E335E		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	335							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CCTTTCCTGGTTCTTGAGTGT	0.448													79	310					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059682	152059682	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152059682G>A	uc001ezo.1	-	3	541	c.476C>T	c.(475-477)CCA>CTA	p.P159L		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	159							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TTCTCTCCATGGGTCCACTCT	0.453													16	100					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059716	152059716	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152059716C>T	uc001ezo.1	-	3	507	c.442G>A	c.(442-444)GAA>AAA	p.E148K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	148							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GCTCCACTTTCTTCAGGGATG	0.468													36	84					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059983	152059983	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152059983G>A	uc001ezo.1	-	3	240	c.175C>T	c.(175-177)CTT>TTT	p.L59F		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	59	EF-hand.						calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			ATATTCAGAAGATTTGAATTT	0.363													32	48					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152060506	152060506	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152060506C>T	uc001ezo.1	-	2	179	c.114G>A	c.(112-114)CAG>CAA	p.Q38Q		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	38							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CAAACTCGCCCTGGATGAGTT	0.443													50	194					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152080427	152080427	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152080427G>A	uc001ezp.2	-	2	5266	c.5266C>T	c.(5266-5268)CGT>TGT	p.R1756C	TCHH_uc009wne.1_Missense_Mutation_p.R1756C	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1756	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTTCCGGACGGAGCTGCTCT	0.592													16	118					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152081132	152081132	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152081132C>T	uc001ezp.2	-	2	4561	c.4561G>A	c.(4561-4563)GAA>AAA	p.E1521K	TCHH_uc009wne.1_Missense_Mutation_p.E1521K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1521	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGCTGCTGTTCCTCCTCGAGG	0.607													25	128					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152081480	152081480	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152081480C>T	uc001ezp.2	-	2	4213	c.4213G>A	c.(4213-4215)GAG>AAG	p.E1405K	TCHH_uc009wne.1_Missense_Mutation_p.E1405K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1405	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGCTGTTGCTCGCGCTCCTGG	0.577													46	135					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152081516	152081516	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152081516G>A	uc001ezp.2	-	2	4177	c.4177C>T	c.(4177-4179)CTT>TTT	p.L1393F	TCHH_uc009wne.1_Missense_Mutation_p.L1393F	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1393	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTCCTTAAGGAATTTTCTC	0.587													20	166					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152083782	152083782	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152083782C>T	uc001ezp.2	-	2	1911	c.1911G>A	c.(1909-1911)GAG>GAA	p.E637E	TCHH_uc009wne.1_Silent_p.E637E	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	637	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTCCTGCTCCTCGCTCTTCA	0.677													20	142					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152084126	152084126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152084126C>T	uc001ezp.2	-	2	1567	c.1567G>A	c.(1567-1569)GAG>AAG	p.E523K	TCHH_uc009wne.1_Missense_Mutation_p.E523K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	523	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTTCCTCCTCCTGGCGCTTC	0.652													44	196					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152084368	152084368	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152084368C>T	uc001ezp.2	-	2	1325	c.1325G>A	c.(1324-1326)AGG>AAG	p.R442K	TCHH_uc009wne.1_Missense_Mutation_p.R442K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	442	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ctgctcgcgcctctcctgctc	0.095													22	89					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152085471	152085471	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152085471G>A	uc001ezp.2	-	2	222	c.222C>T	c.(220-222)TTC>TTT	p.F74F	TCHH_uc009wne.1_Silent_p.F74F	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	74	EF-hand 2.|S-100-like.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TAAATAGGAGGAATTCGTTGA	0.478													10	48					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152086448	152086448	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152086448G>A	uc001ezp.2	-	1	109	c.109C>T	c.(109-111)CTT>TTT	p.L37F	TCHH_uc009wne.1_Missense_Mutation_p.L37F	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	37	EF-hand 1.|S-100-like.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCCTTTCAAGGAGGTTCTTC	0.403													21	125					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152127505	152127505	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152127505C>T	uc001ezs.1	-	3	2135	c.2070G>A	c.(2068-2070)CAG>CAA	p.Q690Q		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	690	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGGTCTGGGCCTGTCTGTGGC	0.527													61	160					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152127615	152127615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152127615C>T	uc001ezs.1	-	3	2025	c.1960G>A	c.(1960-1962)GAT>AAT	p.D654N		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	654	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGTTGGCTATCCTCTTCAGGC	0.507													26	89					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152127776	152127777	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152127776_152127777CC>TT	uc001ezs.1	-	3	1863_1864	c.1798_1799GG>AA	c.(1798-1800)GGG>AAG	p.G600K		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	600	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCCTTCAGTCCCTTGGAAGTAC	0.455													100	260					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128509	152128509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152128509C>T	uc001ezs.1	-	3	1131	c.1066G>A	c.(1066-1068)GAT>AAT	p.D356N		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	356	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TTTGTCTGATCATAATGATAA	0.488													293	643					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128681	152128681	+	Silent	SNP	C	T	T	rs112678204		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152128681C>T	uc001ezs.1	-	3	959	c.894G>A	c.(892-894)ACG>ACA	p.T298T		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	298	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						CTTGTCTGTCCGTCTGACCGT	0.507													228	623					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152187840	152187840	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152187840C>T	uc001ezt.1	-	3	6341	c.6265G>A	c.(6265-6267)GGT>AGT	p.G2089S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2089	23.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAAGACCGACCGGAGCCAGAC	0.622													45	121					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152188066	152188066	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152188066G>A	uc001ezt.1	-	3	6115	c.6039C>T	c.(6037-6039)TCC>TCT	p.S2013S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2013	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CATGGGTAGAGGAATGACCTG	0.557													37	566					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152188190	152188190	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152188190C>T	uc001ezt.1	-	3	5991	c.5915G>A	c.(5914-5916)GGG>GAG	p.G1972E		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1972	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGAAGACCACCCTGAGCCAGA	0.607													38	730					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152191233	152191233	+	Missense_Mutation	SNP	C	T	T	rs138860104	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152191233C>T	uc001ezt.1	-	3	2948	c.2872G>A	c.(2872-2874)GAA>AAA	p.E958K		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	958	10.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCGTGTTGTTCGTAGCTGGAG	0.552													135	331					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152191385	152191385	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152191385C>T	uc001ezt.1	-	3	2796	c.2720G>A	c.(2719-2721)GGC>GAC	p.G907D		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	907	10.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCATGTCGGCCATAGCTGGG	0.652													72	191					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152192594	152192595	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152192594_152192595CC>TT	uc001ezt.1	-	3	1586_1587	c.1510_1511GG>AA	c.(1510-1512)GGT>AAT	p.G504N		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	504	5.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTCGTTCACCCCTAGATGAC	0.55													108	336					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152193650	152193650	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152193650G>A	uc001ezt.1	-	3	531	c.455C>T	c.(454-456)ACT>ATT	p.T152I		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	152	1.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TATGGATTCAGTCCCAGGTTT	0.438													10	125					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152193831	152193831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152193831C>T	uc001ezt.1	-	3	350	c.274G>A	c.(274-276)GAT>AAT	p.D92N		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	92					keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGCAGTAATCTTTGCCAATG	0.413													23	64					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152275534	152275534	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152275534C>T	uc001ezu.1	-	3	11864	c.11828G>A	c.(11827-11829)GGA>GAA	p.G3943E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3943	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGACTGTATTCCTGAGTGATA	0.433									Ichthyosis				46	88					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152275650	152275650	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152275650G>A	uc001ezu.1	-	3	11748	c.11712C>T	c.(11710-11712)TCC>TCT	p.S3904S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3904	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CGCGGTGAGAGGATCCGGGGT	0.502									Ichthyosis				30	88					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152275978	152275978	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152275978C>T	uc001ezu.1	-	3	11420	c.11384G>A	c.(11383-11385)GGA>GAA	p.G3795E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3795	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCAGACCTTCCCTGGGATGT	0.577									Ichthyosis				195	490					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152276647	152276647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152276647C>T	uc001ezu.1	-	3	10751	c.10715G>A	c.(10714-10716)AGA>AAA	p.R3572K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3572	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGAGCCATCTCTTGACTGCTC	0.557									Ichthyosis				33	455					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152276773	152276773	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152276773C>T	uc001ezu.1	-	3	10625	c.10589G>A	c.(10588-10590)AGG>AAG	p.R3530K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3530	Ser-rich.|Filaggrin 21.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTGCTTGTCCTGGGCCCCGC	0.577									Ichthyosis				108	279					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152277022	152277022	+	Missense_Mutation	SNP	C	T	T	rs138147945	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152277022C>T	uc001ezu.1	-	3	10376	c.10340G>A	c.(10339-10341)GGA>GAA	p.G3447E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3447	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTAGTGGGATCCCTGCCTTCC	0.607									Ichthyosis				177	398					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152277031	152277031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152277031C>T	uc001ezu.1	-	3	10367	c.10331G>A	c.(10330-10332)GGA>GAA	p.G3444E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3444	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCCTGCCTTCCTCTTCTGCT	0.602									Ichthyosis				162	415					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152277924	152277924	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152277924C>T	uc001ezu.1	-	3	9474	c.9438G>A	c.(9436-9438)CAG>CAA	p.Q3146Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3146	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGACCTTCCCTGGGATGTGG	0.572									Ichthyosis				107	271					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152278088	152278088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152278088C>T	uc001ezu.1	-	3	9310	c.9274G>A	c.(9274-9276)GAG>AAG	p.E3092K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3092	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTGCCTGCTCATGGCGGGAT	0.577									Ichthyosis				97	263					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152278822	152278822	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152278822G>A	uc001ezu.1	-	3	8576	c.8540C>T	c.(8539-8541)TCA>TTA	p.S2847L		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2847	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCGTCTCCTGATTGTTCCTC	0.567									Ichthyosis				106	697					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152280073	152280073	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152280073C>T	uc001ezu.1	-	3	7325	c.7289G>A	c.(7288-7290)CGG>CAG	p.R2430Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2430	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGTCCCGGTCCGTCCATGGGC	0.587									Ichthyosis				95	363					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152280433	152280433	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152280433G>A	uc001ezu.1	-	3	6965	c.6929C>T	c.(6928-6930)TCC>TTC	p.S2310F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2310	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCACCAGAGGAATTCTCTGC	0.567									Ichthyosis				167	485					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152280446	152280446	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152280446G>A	uc001ezu.1	-	3	6952	c.6916C>T	c.(6916-6918)CAT>TAT	p.H2306Y		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2306	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCTCTGCATGATGAGTGCCT	0.562									Ichthyosis				151	455					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152280694	152280694	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152280694G>A	uc001ezu.1	-	3	6704	c.6668C>T	c.(6667-6669)TCA>TTA	p.S2223L		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2223	Ser-rich.|Filaggrin 13.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCCACCAGTGAGTGTCTAGA	0.542									Ichthyosis				122	266					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152280766	152280766	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152280766G>A	uc001ezu.1	-	3	6632	c.6596C>T	c.(6595-6597)TCA>TTA	p.S2199L		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2199	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCATCTCCTGATTGTTCCTT	0.542									Ichthyosis				174	395					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152281220	152281220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152281220C>T	uc001ezu.1	-	3	6178	c.6142G>A	c.(6142-6144)GAG>AAG	p.E2048K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2048	Ser-rich.|Filaggrin 12.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAATGTCCCTCACTGTCACTG	0.562									Ichthyosis				232	548					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152281792	152281792	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152281792C>T	uc001ezu.1	-	3	5606	c.5570G>A	c.(5569-5571)GGG>GAG	p.G1857E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1857	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTGACTGCCCACGGGAGAC	0.542									Ichthyosis				164	478					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152281937	152281937	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152281937C>T	uc001ezu.1	-	3	5461	c.5425G>A	c.(5425-5427)GGT>AGT	p.G1809S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1809	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGTCCTGACCCTCTTGGGAC	0.597									Ichthyosis				128	543					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152282195	152282195	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152282195C>T	uc001ezu.1	-	3	5203	c.5167G>A	c.(5167-5169)GAG>AAG	p.E1723K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1723	Ser-rich.|Filaggrin 10.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGTGTCCCTCGCTGTCACTG	0.597									Ichthyosis				144	343					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152282402	152282402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152282402C>T	uc001ezu.1	-	3	4996	c.4960G>A	c.(4960-4962)GGC>AGC	p.G1654S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1654	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGACGAGTGCCTGATTGTCTG	0.562									Ichthyosis				145	398					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152282624	152282624	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152282624C>T	uc001ezu.1	-	3	4774	c.4738G>A	c.(4738-4740)GAA>AAA	p.E1580K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1580	Ser-rich.|Filaggrin 9.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCGCTGATTCTCCCTGGCCC	0.597									Ichthyosis				127	261					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152283247	152283247	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152283247C>T	uc001ezu.1	-	3	4151	c.4115G>A	c.(4114-4116)GGC>GAC	p.G1372D	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1372	Ser-rich.|Filaggrin 8.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGCCCAATGCCTGAGTGTCT	0.537									Ichthyosis				213	560					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152283989	152283989	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152283989C>T	uc001ezu.1	-	3	3409	c.3373G>A	c.(3373-3375)GAA>AAA	p.E1125K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1125	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCAGACTGTTCATGAGTGCTC	0.607									Ichthyosis				128	339					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152284502	152284502	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152284502C>T	uc001ezu.1	-	3	2896	c.2860G>A	c.(2860-2862)GGA>AGA	p.G954R	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	954	Ser-rich.|Filaggrin 5.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTGAATGTCCCTCACTGTCA	0.572									Ichthyosis				157	376					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152284619	152284619	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152284619C>T	uc001ezu.1	-	3	2779	c.2743G>A	c.(2743-2745)GAA>AAA	p.E915K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	915	Ser-rich.|Filaggrin 5.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGGAAGCTTCATGGTGACGT	0.567									Ichthyosis				160	405					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152286549	152286549	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152286549C>T	uc001ezu.1	-	3	849	c.813G>A	c.(811-813)GTG>GTA	p.V271V	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	271	Filaggrin 1.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGACCTGTTCACTTGAGATG	0.438									Ichthyosis				27	309					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152286638	152286638	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152286638C>T	uc001ezu.1	-	3	760	c.724G>A	c.(724-726)GAA>AAA	p.E242K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	242					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCATAGGCTTCATCCTGGATT	0.353									Ichthyosis				46	123					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152286690	152286690	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152286690A>G	uc001ezu.1	-	3	708	c.672T>C	c.(670-672)ACT>ACC	p.T224T	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	224					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCATTTTTGAGTCATTCTTC	0.348									Ichthyosis				26	92					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152286797	152286797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152286797C>T	uc001ezu.1	-	3	601	c.565G>A	c.(565-567)GAA>AAA	p.E189K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	189	Potential.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTAGTATTTTCAGTCTTGTTT	0.308									Ichthyosis				9	80					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152286905	152286905	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152286905C>T	uc001ezu.1	-	3	493	c.457G>A	c.(457-459)GAA>AAA	p.E153K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	153					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAACTAGATTCATGCCTTTTC	0.348									Ichthyosis				17	130					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152286946	152286946	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152286946C>T	uc001ezu.1	-	3	452	c.416G>A	c.(415-417)GGA>GAA	p.G139E	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	139					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTGGATCTTCCCTTATTCCC	0.353									Ichthyosis				35	133					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152323637	152323637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152323637C>T	uc001ezw.3	-	3	6698	c.6625G>A	c.(6625-6627)GGA>AGA	p.G2209R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2209							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTGACTGTCCATGTCGAGAT	0.507													41	468					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152324066	152324066	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152324066G>A	uc001ezw.3	-	3	6269	c.6196C>T	c.(6196-6198)CAT>TAT	p.H2066Y	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2066							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCTCTCATGAACTGAGGAT	0.532													196	481					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152324482	152324482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152324482C>T	uc001ezw.3	-	3	5853	c.5780G>A	c.(5779-5781)GGA>GAA	p.G1927E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1927							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGGTATCTCCTGTCTGTCC	0.502													101	245					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152324495	152324495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152324495G>A	uc001ezw.3	-	3	5840	c.5767C>T	c.(5767-5769)CAT>TAT	p.H1923Y	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1923							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCTGTCCATGAGTAGTTTGG	0.517													63	263					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152324972	152324972	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152324972G>A	uc001ezw.3	-	3	5363	c.5290C>T	c.(5290-5292)CAT>TAT	p.H1764Y	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1764	Filaggrin 7.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCTCTCATGAACTATGGAT	0.507													93	254					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152325151	152325151	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152325151C>T	uc001ezw.3	-	3	5184	c.5111G>A	c.(5110-5112)AGA>AAA	p.R1704K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1704							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGGGCATGTCTAGTGGTATC	0.493													116	389					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152325619	152325619	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152325619C>T	uc001ezw.3	-	3	4716	c.4643G>A	c.(4642-4644)GGA>GAA	p.G1548E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1548							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGGTATCTCCTGTCTGTCC	0.473													72	368					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152326001	152326001	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152326001C>T	uc001ezw.3	-	3	4334	c.4261G>A	c.(4261-4263)GGA>AGA	p.G1421R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1421							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGCCAGATCCCCTTCTTCCA	0.527													139	340					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152326351	152326351	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152326351C>T	uc001ezw.3	-	3	3984	c.3911G>A	c.(3910-3912)GGA>GAA	p.G1304E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1304							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACTGTGGATCCTGACTTTGG	0.478													68	287					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152327273	152327273	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152327273A>T	uc001ezw.3	-	3	3062	c.2989T>A	c.(2989-2991)TCT>ACT	p.S997T	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	997	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCATAATTAGACTGACTTGAT	0.488													160	390					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152328286	152328286	+	Missense_Mutation	SNP	C	T	T	rs145112487		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152328286C>T	uc001ezw.3	-	3	2049	c.1976G>A	c.(1975-1977)GGA>GAA	p.G659E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	659	Ser-rich.						calcium ion binding|structural molecule activity	p.G659E(1)		ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAGCCTGATCCATATTGGCC	0.493													142	377					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152329580	152329580	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152329580C>T	uc001ezw.3	-	3	755	c.682G>A	c.(682-684)GGA>AGA	p.G228R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	228	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGTTTGATCCAGATCCAGAT	0.438													80	234					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152329710	152329710	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152329710G>A	uc001ezw.3	-	3	625	c.552C>T	c.(550-552)TCC>TCT	p.S184S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	184	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCACAGCTGGACCTGTGGT	0.468													68	154					0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152382199	152382199	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152382199G>A	uc001ezx.2	-	3	1433	c.1359C>T	c.(1357-1359)CTC>CTT	p.L453L		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	453					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGTCCAGCCTGAGGATCACTG	0.572													30	87					0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152382267	152382267	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152382267C>T	uc001ezx.2	-	3	1365	c.1291G>A	c.(1291-1293)GGA>AGA	p.G431R		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	431					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCTGTCTCCCTGCCCTTCT	0.592													34	70					0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152382554	152382554	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152382554C>T	uc001ezx.2	-	3	1078	c.1004G>A	c.(1003-1005)AGG>AAG	p.R335K		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	335	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGTCTGGCTCCTGCCTTGACC	0.592													74	190					0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152383212	152383212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152383212C>T	uc001ezx.2	-	3	420	c.346G>A	c.(346-348)GGA>AGA	p.G116R		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	116					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTCTCTGTCCTTCGCCCAGC	0.617													159	301					0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152383234	152383234	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152383234C>T	uc001ezx.2	-	3	398	c.324G>A	c.(322-324)GGG>GGA	p.G108G		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	108					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTGCGAGGCCCCAGAGTGGA	0.592													108	322					0	0	1	0	0
CRCT1	54544	broad.mit.edu	37	1	152487946	152487946	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152487946C>T	uc001ezz.2	+	2	160	c.87C>T	c.(85-87)CCC>CCT	p.P29P		NM_019060	NP_061933	Q9UGL9	CRCT1_HUMAN	cysteine-rich C-terminal 1	29											0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			ccccggcgcccaccccggcgc	0.483													3	23					0	0	1	0	0
LCE3E	353145	broad.mit.edu	37	1	152538680	152538680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152538680G>A	uc001faa.2	-	2	61	c.5C>T	c.(4-6)TCC>TTC	p.S2F		NM_178435	NP_848522	Q5T5B0	LCE3E_HUMAN	late cornified envelope 3E	2					keratinization					ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		Lung(1;0.000294)|LUAD - Lung adenocarcinoma(1;0.00527)|LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)		CTGCTGGCAGGACATCTTGGC	0.542													23	55					0	0	1	0	0
LCE3D	84648	broad.mit.edu	37	1	152552347	152552347	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152552347G>A	uc001fab.2	-	2	123	c.66C>T	c.(64-66)CCC>CCT	p.P22P		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	22					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		GGCTCTTTGGGGGACACTTGG	0.607													24	151					0	0	1	0	0
LCE3C	353144	broad.mit.edu	37	1	152573387	152573387	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152573387C>T	uc001fac.2	+	1	250	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_178434	NP_848521	Q5T5A8	LCE3C_HUMAN	late cornified envelope 3C	60					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0313)|Kidney(5;0.0367)		ACAGGCACTTCAGGTCCCATC	0.642													39	35					0	0	1	0	0
LCE2D	353141	broad.mit.edu	37	1	152636718	152636718	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152636718C>T	uc001fag.2	+	2	192	c.137C>T	c.(136-138)TCC>TTC	p.S46F		NM_178430	NP_848517	Q5TA82	LCE2D_HUMAN	late cornified envelope 2D	46	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCAGTCTCTTCCTGCTGTGGT	0.632													79	190					0	0	1	0	0
LCE2A	353139	broad.mit.edu	37	1	152671682	152671682	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152671682C>T	uc001faj.2	+	2	356	c.305C>T	c.(304-306)TCT>TTT	p.S102F		NM_178428	NP_848515	Q5TA79	LCE2A_HUMAN	late cornified envelope 2A	102	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCCACAGCTCTGGGGACTGC	0.602													18	106					0	0	1	0	0
KPRP	448834	broad.mit.edu	37	1	152733505	152733505	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152733505C>T	uc001fal.1	+	2	1499	c.1441C>T	c.(1441-1443)CTG>TTG	p.L481L		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	481	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCAATTCCCCTGCCGGCGCC	0.662													52	103					0	0	1	0	0
KPRP	448834	broad.mit.edu	37	1	152733510	152733510	+	Silent	SNP	G	A	A	rs138516775		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152733510G>A	uc001fal.1	+	2	1504	c.1446G>A	c.(1444-1446)CCG>CCA	p.P482P		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	482	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCCCTGCCGGCGCCCTGCC	0.657													41	95					0	0	1	0	0
KPRP	448834	broad.mit.edu	37	1	152733541	152733541	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152733541G>A	uc001fal.1	+	2	1535	c.1477G>A	c.(1477-1479)GAG>AAG	p.E493K		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	493	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCCTGCAGGGAGACTTGGCG	0.652													35	74					0	0	1	0	0
LCE1E	353135	broad.mit.edu	37	1	152760099	152760099	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152760099G>A	uc001fan.2	+	2	377	c.324G>A	c.(322-324)GGG>GGA	p.G108G		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	108	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTGTGGAGGGGGCAGCGGCC	0.617													43	130					0	0	1	0	0
LCE1A	353131	broad.mit.edu	37	1	152800190	152800190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152800190G>A	uc010pdw.1	+	1	242	c.242G>A	c.(241-243)AGA>AAA	p.R81K		NM_178348	NP_848125	Q5T7P2	LCE1A_HUMAN	late cornified envelope 1A	81	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACCGTCACAGACTCCAGAGC	0.697													19	42					0	0	1	0	0
SMCP	4184	broad.mit.edu	37	1	152856947	152856947	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152856947C>T	uc001fat.2	+	2	194	c.49C>T	c.(49-51)CAA>TAA	p.Q17*		NM_030663	NP_109588	P49901	MCSP_HUMAN	sperm mitochondria-associated cysteine-rich	17	2.|7 X 7 (OR 8) AA approximate repeats.				penetration of zona pellucida|sperm motility	mitochondrial membrane					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AAAAGGCAATCAATGCTGCCC	0.458													16	95					0	0	1	0	0
IVL	3713	broad.mit.edu	37	1	152882619	152882619	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152882619G>A	uc001fau.2	+	2	392	c.346G>A	c.(346-348)GAT>AAT	p.D116N		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	116					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AACACAAAGGGATCAGCAGCT	0.358													21	44					0	0	1	0	0
IVL	3713	broad.mit.edu	37	1	152883916	152883916	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152883916C>T	uc001fau.2	+	2	1689	c.1643C>T	c.(1642-1644)GCT>GTT	p.A548V		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	548					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TTTGCCCCAGCTCCAGGCCAG	0.333													16	42					0	0	1	0	0
SPRR3	6707	broad.mit.edu	37	1	152975793	152975793	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152975793C>T	uc001fax.3	+	3	447	c.297C>T	c.(295-297)ACC>ACT	p.T99T	SPRR3_uc001faz.3_Silent_p.T99T|SPRR3_uc001fay.2_Silent_p.T91T	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	99	8.|14 X 8 AA approximate tandem repeats.		Missing.		keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CAGGTTGTACCAAGGTCCCTG	0.582													7	55					0	0	1	0	0
SPRR2D	6703	broad.mit.edu	37	1	153012737	153012737	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153012737G>A	uc001fbb.2	-	2	146	c.86C>T	c.(85-87)CCC>CTC	p.P29L	SPRR2D_uc009wnz.2_RNA	NM_006945	NP_008876	P22532	SPR2D_HUMAN	small proline-rich protein 2D	29	3 X 9 AA tandem repeats of P-K-C-P-[EQ]- P-C-P-[PS].|1.				keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCACTTCGGGGGTGGACATGG	0.612													68	123					0	0	1	0	0
SPRR2D	6703	broad.mit.edu	37	1	153012740	153012740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153012740G>A	uc001fbb.2	-	2	143	c.83C>T	c.(82-84)CCA>CTA	p.P28L	SPRR2D_uc009wnz.2_RNA	NM_006945	NP_008876	P22532	SPR2D_HUMAN	small proline-rich protein 2D	28	3 X 9 AA tandem repeats of P-K-C-P-[EQ]- P-C-P-[PS].|1.				keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTTCGGGGGTGGACATGGCTC	0.607													51	138					0	0	1	0	0
LELP1	149018	broad.mit.edu	37	1	153177391	153177391	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153177391C>T	uc001fbl.2	+	2	318	c.208C>T	c.(208-210)CCT>TCT	p.P70S		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	70	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TTCATCCTGCCCTCCCCAGCC	0.612													24	44					0	0	1	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153274984	153274984	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153274984G>A	uc001fbn.1	-	5	682	c.629C>T	c.(628-630)GCT>GTT	p.A210V		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	210					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCTTGTGCCAGCGGTGTGGAT	0.488													45	86					0	0	1	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153276337	153276337	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153276337C>T	uc001fbn.1	-	4	578	c.525G>A	c.(523-525)AGG>AGA	p.R175R		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	175					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCTTACCCTTCCTGGGCATCA	0.537													29	72					0	0	1	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153279637	153279637	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153279637C>T	uc001fbn.1	-	2	215	c.162G>A	c.(160-162)GGG>GGA	p.G54G		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	54					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGCACTGCATCCCTGGGAGCT	0.632													5	10					0	0	1	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153279643	153279643	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153279643G>A	uc001fbn.1	-	2	209	c.156C>T	c.(154-156)CTC>CTT	p.L52L		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	52					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCATCCCTGGGAGCTGGTCTG	0.632													6	8					0	0	1	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153312970	153312970	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153312970G>A	uc001fbo.2	-	7	776	c.711C>T	c.(709-711)ATC>ATT	p.I237I	PGLYRP4_uc001fbp.2_Silent_p.I233I	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	237					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGTGGATAATGATGCCATACT	0.597													25	65					0	0	1	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153314127	153314127	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153314127G>A	uc001fbo.2	-	6	666	c.601C>T	c.(601-603)CGG>TGG	p.R201W	PGLYRP4_uc001fbp.2_Missense_Mutation_p.R197W	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	201					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTCTTCTGCCGAGGGGCCAGG	0.542													39	114					0	0	1	0	0
S100A12	6283	broad.mit.edu	37	1	153347053	153347053	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153347053C>T	uc001fbr.1	-	2	84	c.16G>A	c.(16-18)GAG>AAG	p.E6K		NM_005621	NP_005612	P80511	S10AC_HUMAN	S100 calcium-binding protein A12	6					defense response to bacterium|defense response to fungus|inflammatory response|innate immune response|killing of cells of other organism|positive regulation of I-kappaB kinase/NF-kappaB cascade|xenobiotic metabolic process	cytosol|extracellular region|insoluble fraction|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)		Amlexanox(DB01025)	TCCAGATGCTCTTCAAGTTTT	0.483													48	110					0	0	1	0	0
S100A8	6279	broad.mit.edu	37	1	153362973	153362973	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153362973G>A	uc001fbs.2	-	2	94	c.39C>T	c.(37-39)ATC>ATT	p.I13I		NM_002964	NP_002955	P05109	S10A8_HUMAN	S100 calcium-binding protein A8	13	EF-hand 1.				chemotaxis	cytoplasm|cytoskeleton|plasma membrane	calcium ion binding|protein binding				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGTAGACGTCGATGATAGAGT	0.498													68	146					0	0	1	0	0
S100A7	6278	broad.mit.edu	37	1	153430313	153430313	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153430313C>T	uc001fbv.1	-	3	346	c.275G>A	c.(274-276)GGA>GAA	p.G92E		NM_002963	NP_002954	P31151	S10A7_HUMAN	S100 calcium binding protein A7	92					angiogenesis|defense response to Gram-negative bacterium|innate immune response|keratinocyte differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|response to lipopolysaccharide|response to reactive oxygen species|sequestering of metal ion	cytosol|endoplasmic reticulum|extracellular region|focal adhesion|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding			skin(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGGCGCTGCTCCATGGCTCTG	0.517													33	86					0	0	1	0	0
S100A7	6278	broad.mit.edu	37	1	153430423	153430423	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153430423G>A	uc001fbv.1	-	3	236	c.165C>T	c.(163-165)CTC>CTT	p.L55L		NM_002963	NP_002954	P31151	S10A7_HUMAN	S100 calcium binding protein A7	55	EF-hand 2.				angiogenesis|defense response to Gram-negative bacterium|innate immune response|keratinocyte differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|response to lipopolysaccharide|response to reactive oxygen species|sequestering of metal ion	cytosol|endoplasmic reticulum|extracellular region|focal adhesion|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding			skin(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGACATCGGCGAGGTAATTTG	0.418													26	100					0	0	1	0	0
S100A7	6278	broad.mit.edu	37	1	153431388	153431388	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153431388C>T	uc001fbv.1	-	2	173	c.102G>A	c.(100-102)ACG>ACA	p.T34T		NM_002963	NP_002954	P31151	S10A7_HUMAN	S100 calcium binding protein A7	34	EF-hand 1.				angiogenesis|defense response to Gram-negative bacterium|innate immune response|keratinocyte differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|response to lipopolysaccharide|response to reactive oxygen species|sequestering of metal ion	cytosol|endoplasmic reticulum|extracellular region|focal adhesion|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding			skin(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCTTCATCATCGTCAGCAGGC	0.413													48	139					0	0	1	0	0
S100A7	6278	broad.mit.edu	37	1	153431438	153431438	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153431438G>A	uc001fbv.1	-	2	123	c.52C>T	c.(52-54)CAC>TAC	p.H18Y		NM_002963	NP_002954	P31151	S10A7_HUMAN	S100 calcium binding protein A7	18	EF-hand 1.	Zinc.			angiogenesis|defense response to Gram-negative bacterium|innate immune response|keratinocyte differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|response to lipopolysaccharide|response to reactive oxygen species|sequestering of metal ion	cytosol|endoplasmic reticulum|extracellular region|focal adhesion|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding			skin(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTGTATTTGTGAAACATGTCG	0.438													54	144					0	0	1	0	0
S100A3	6274	broad.mit.edu	37	1	153520173	153520173	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153520173G>A	uc001fca.1	-	3	374	c.291C>T	c.(289-291)CCC>CCT	p.P97P	S100A4_uc001fby.2_5'Flank|S100A4_uc001fbz.2_5'Flank|uc009wog.1_Intron	NM_002960	NP_002951	P33764	S10A3_HUMAN	S100 calcium binding protein A3	97							calcium ion binding|protein binding				0	all_lung(78;5.98e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGGAGCAGGGGGGCTCTGAGG	0.622													17	91					0	0	1	0	0
S100A3	6274	broad.mit.edu	37	1	153520175	153520175	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153520175G>A	uc001fca.1	-	3	372	c.289C>T	c.(289-291)CCC>TCC	p.P97S	S100A4_uc001fby.2_5'Flank|S100A4_uc001fbz.2_5'Flank|uc009wog.1_Intron	NM_002960	NP_002951	P33764	S10A3_HUMAN	S100 calcium binding protein A3	97							calcium ion binding|protein binding				0	all_lung(78;5.98e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GAGCAGGGGGGCTCTGAGGGG	0.622													27	83					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153652206	153652206	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153652206C>T	uc001fcs.3	+	1	1043	c.622C>T	c.(622-624)CGC>TGC	p.R208C	NPR1_uc010pdz.1_5'Flank	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	208	Extracellular (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	CATGCGGGTCCGCGACCGCCT	0.657													4	18					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153655048	153655048	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153655048G>A	uc001fcs.3	+	5	1667	c.1246G>A	c.(1246-1248)GAG>AAG	p.E416K	NPR1_uc010pdz.1_Missense_Mutation_p.E162K|NPR1_uc010pea.1_5'Flank	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	416	Extracellular (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TATGGATCCCGAGAATGGTGC	0.527													13	49					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153660163	153660163	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153660163G>A	uc001fcs.3	+	14	2567	c.2146G>A	c.(2146-2148)GGC>AGC	p.G716S	NPR1_uc010pdz.1_Missense_Mutation_p.G462S|NPR1_uc010pea.1_Missense_Mutation_p.G194S	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	716	Cytoplasmic (Potential).|Protein kinase.				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	CCCTGTGCGGGGCTCCCAGGC	0.597													43	125					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153661465	153661466	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153661465_153661466CC>TT	uc001fcs.3	+	16	2875_2876	c.2454_2455CC>TT	c.(2452-2457)TCCCGC>TCTTGC	p.R819C	NPR1_uc010pdz.1_Missense_Mutation_p.R565C|NPR1_uc010pea.1_Missense_Mutation_p.R297C	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	819	Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	ACCTGCTGTCCCGCATGGAGCA	0.629													39	154					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153661707	153661707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153661707G>A	uc001fcs.3	+	17	3029	c.2608G>A	c.(2608-2610)GAA>AAA	p.E870K	NPR1_uc010pdz.1_Missense_Mutation_p.E616K|NPR1_uc010pea.1_Missense_Mutation_p.E348K	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	870	Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	GGTGCAGGCCGAAGCCTTTGA	0.602													33	106					0	0	1	0	0
INTS3	65123	broad.mit.edu	37	1	153724787	153724787	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153724787C>T	uc009wom.2	+	9	983	c.762C>T	c.(760-762)CTC>CTT	p.L254L	INTS3_uc001fct.2_Silent_p.L254L|INTS3_uc001fcu.2_5'UTR|INTS3_uc001fcv.2_Silent_p.L48L|INTS3_uc010peb.1_Silent_p.L48L|INTS3_uc001fcw.2_5'UTR	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	255					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GTCGGGATCTCGTAAGACTAC	0.428													89	269					0	0	1	0	0
SLC27A3	11000	broad.mit.edu	37	1	153749612	153749612	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153749612C>T	uc001fcz.2	+	3	1158	c.1093C>T	c.(1093-1095)CAC>TAC	p.H365Y	SLC27A3_uc009won.2_RNA	NM_024330	NP_077306	Q5K4L6	S27A3_HUMAN	solute carrier family 27 member 3	365					fatty acid metabolic process	integral to membrane|mitochondrial membrane	ligase activity|nucleotide binding			ovary(1)	1	all_lung(78;6.47e-32)|Lung NSC(65;2.52e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GTGTGGTGTCCACCAGGAAGA	0.587													36	105					0	0	1	0	0
SLC27A3	11000	broad.mit.edu	37	1	153751848	153751848	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153751848C>T	uc001fcz.2	+	9	1980	c.1915C>T	c.(1915-1917)CTA>TTA	p.L639L	SLC27A3_uc009won.2_RNA	NM_024330	NP_077306	Q5K4L6	S27A3_HUMAN	solute carrier family 27 member 3	639					fatty acid metabolic process	integral to membrane|mitochondrial membrane	ligase activity|nucleotide binding			ovary(1)	1	all_lung(78;6.47e-32)|Lung NSC(65;2.52e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AATGGCAGCCCTAGTTCTGCG	0.627													31	80					0	0	1	0	0
DENND4B	9909	broad.mit.edu	37	1	153913883	153913883	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153913883G>A	uc001fdd.1	-	7	1490	c.1089C>T	c.(1087-1089)TTC>TTT	p.F363F		NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	363	DENN.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GTGGGGAAGGGAAGGGAACGT	0.592													10	29					0	0	1	0	0
CRTC2	200186	broad.mit.edu	37	1	153925837	153925837	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153925837G>A	uc010ped.1	-	6	582	c.512C>T	c.(511-513)TCT>TTT	p.S171F	CRTC2_uc001fde.3_RNA|CRTC2_uc001fdf.3_5'UTR	NM_181715	NP_859066	Q53ET0	CRTC2_HUMAN	CREB regulated transcription coactivator 2	171				S->A: Loss of cAMP- and calcium-regulated phosphorylation. Greatly reduced interaction with 14-3-3 proteins.	interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)	2	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GGCAGAGTCAGAGCTTGTCCT	0.587													17	71					0	0	1	0	0
SLC39A1	27173	broad.mit.edu	37	1	153932928	153932929	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:153932928_153932929GG>AA	uc001fdh.2	-	4	789_790	c.620_621CC>TT	c.(619-621)GCC>GTT	p.A207V	CRTC2_uc010ped.1_5'Flank|SLC39A1_uc001fdi.2_Missense_Mutation_p.A207V|SLC39A1_uc001fdj.2_Missense_Mutation_p.A207V|SLC39A1_uc001fdk.2_Missense_Mutation_p.A207V|SLC39A1_uc010pee.1_Missense_Mutation_p.A105V|SLC39A1_uc001fdl.2_Missense_Mutation_p.A207V	NM_014437	NP_055252	Q9NY26	S39A1_HUMAN	solute carrier family 39 (zinc transporter),	207	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|membrane fraction|plasma membrane	zinc ion transmembrane transporter activity				0	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)	Colorectal(1306;0.019)		ACAGCTCCATGGCCCGAGCCCG	0.663													16	35					0	0	1	0	0
NUP210L	91181	broad.mit.edu	37	1	154067584	154067584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154067584C>T	uc001fdw.2	-	15	2086	c.2014G>A	c.(2014-2016)GAA>AAA	p.E672K	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.E672K	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	672						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AATACCATTTCCTTCACAGAC	0.408													21	40					0	0	1	0	0
NUP210L	91181	broad.mit.edu	37	1	154072474	154072474	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154072474C>T	uc001fdw.2	-	14	2037	c.1965G>A	c.(1963-1965)AAG>AAA	p.K655K	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Silent_p.K655K	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	655						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AATATCTTACCTTTAGGGGTT	0.408													78	188					0	0	1	0	0
TPM3	7170	broad.mit.edu	37	1	154163758	154163758	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154163758C>T	uc001fec.1	-	2	262	c.147G>A	c.(145-147)AAG>AAA	p.K49K		NM_152263	NP_689476	P06753	TPM3_HUMAN	tropomyosin 3 isoform 1	48	By similarity.				cellular component movement|muscle filament sliding|regulation of muscle contraction	cytosol|muscle thin filament tropomyosin|stress fiber	actin binding		TPM3/ALK(33)	haematopoietic_and_lymphoid_tissue(22)|soft_tissue(11)|skin(1)	34	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)					CTTTCAGCTTCTTCTGCATGG	0.512			T	NTRK1|ALK	papillary thyroid|ALCL								40	76					0	0	1	0	0
C1orf43	25912	broad.mit.edu	37	1	154186378	154186378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154186378G>A	uc001fei.2	-	4	721	c.331C>T	c.(331-333)CGT>TGT	p.R111C	C1orf43_uc001fef.1_Missense_Mutation_p.R8C|C1orf43_uc001feg.2_Missense_Mutation_p.R77C|C1orf43_uc001feh.2_Intron|C1orf43_uc001fej.2_Intron|C1orf43_uc009wos.1_Intron|C1orf43_uc001fek.2_Missense_Mutation_p.R111C|C1orf43_uc001fel.2_Missense_Mutation_p.R77C	NM_001098616	NP_001092086	Q9BWL3	CA043_HUMAN	hypothetical protein LOC25912 isoform 3	111						integral to membrane	coenzyme binding|oxidoreductase activity				0	all_lung(78;1.98e-30)|Lung NSC(65;2.87e-28)|Hepatocellular(266;0.0877)					CCAGAGGTACGAATGGCATCC	0.433													33	137					0	0	1	0	0
UBAP2L	9898	broad.mit.edu	37	1	154207104	154207104	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154207104C>T	uc001fep.3	+	5	484	c.317C>T	c.(316-318)TCA>TTA	p.S106L	UBAP2L_uc009wot.2_Missense_Mutation_p.S106L|UBAP2L_uc010pek.1_Missense_Mutation_p.S105L|UBAP2L_uc010pel.1_Missense_Mutation_p.S105L|UBAP2L_uc001fen.1_Missense_Mutation_p.S105L|UBAP2L_uc010pem.1_Missense_Mutation_p.S105L|UBAP2L_uc010pen.1_Missense_Mutation_p.S9L	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	106					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			AAGGGAGTCTCAGGCCAGAAG	0.502													14	51					0	0	1	0	0
AQP10	89872	broad.mit.edu	37	1	154296130	154296130	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154296130C>T	uc001feu.2	+	5	595	c.555C>T	c.(553-555)GTC>GTT	p.V185V	AQP10_uc001fev.2_Silent_p.V185V|ATP8B2_uc001few.2_5'Flank	NM_080429	NP_536354	Q96PS8	AQP10_HUMAN	aquaporin 10	185	Cytoplasmic (Potential).				response to toxin|transmembrane transport|water transport	integral to membrane|plasma membrane	transporter activity			central_nervous_system(1)	1	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			ACAAGGGAGTCCCTGCGGGTC	0.622													47	142					0	0	1	0	0
AQP10	89872	broad.mit.edu	37	1	154296247	154296247	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154296247C>T	uc001feu.2	+	5	712	c.672C>T	c.(670-672)TTC>TTT	p.F224F	AQP10_uc001fev.2_Silent_p.F224F|ATP8B2_uc001few.2_5'Flank	NM_080429	NP_536354	Q96PS8	AQP10_HUMAN	aquaporin 10	224	Extracellular (Potential).				response to toxin|transmembrane transport|water transport	integral to membrane|plasma membrane	transporter activity			central_nervous_system(1)	1	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CACGTCTCTTCACCTACGTGG	0.627													13	48					0	0	1	0	0
ATP8B2	57198	broad.mit.edu	37	1	154303543	154303543	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154303543C>T	uc001fey.1	+	4	470	c.281C>T	c.(280-282)TCC>TTC	p.S94F	ATP8B2_uc001few.2_Missense_Mutation_p.S75F|ATP8B2_uc001fex.2_Missense_Mutation_p.S108F	NM_001005855	NP_001005855	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform b	94	Helical; (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CAGATCTCTTCCCTGTCCTGG	0.458													17	75					0	0	1	0	0
ATP8B2	57198	broad.mit.edu	37	1	154306661	154306661	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154306661C>T	uc001fey.1	+	9	914	c.725C>T	c.(724-726)CCT>CTT	p.P242L	ATP8B2_uc001few.2_Missense_Mutation_p.P223L|ATP8B2_uc001fex.2_Missense_Mutation_p.P256L	NM_001005855	NP_001005855	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform b	242	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			AATAAGTTCCCTCTGAGCAAC	0.517													30	327					0	0	1	0	0
ATP8B2	57198	broad.mit.edu	37	1	154317530	154317530	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154317530C>T	uc001fex.2	+	22	2469	c.2469C>T	c.(2467-2469)ACC>ACT	p.T823T		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	809	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GCCGGGTGACCCCCTTGCAGA	0.552											OREG0013835	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	123					0	0	1	0	0
SHE	126669	broad.mit.edu	37	1	154461646	154461646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154461646C>T	uc001ffb.2	-	3	992	c.905G>A	c.(904-906)AGG>AAG	p.R302K	SHE_uc001ffc.2_RNA	NM_001010846	NP_001010846	Q5VZ18	SHE_HUMAN	Src homology 2 domain containing E	302										breast(3)|ovary(2)|central_nervous_system(1)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			CCCCTCTGCCCTGGGCCCCCC	0.647													23	55					0	0	1	0	0
SHE	126669	broad.mit.edu	37	1	154471640	154471640	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154471640G>A	uc001ffb.2	-	2	753	c.666C>T	c.(664-666)GTC>GTT	p.V222V	SHE_uc001ffc.2_RNA	NM_001010846	NP_001010846	Q5VZ18	SHE_HUMAN	Src homology 2 domain containing E	222										breast(3)|ovary(2)|central_nervous_system(1)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			CGTTCTCTCCGACTCTCTCTG	0.433													30	74					0	0	1	0	0
TDRD10	126668	broad.mit.edu	37	1	154492783	154492783	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154492783G>A	uc009wow.2	+	5	983	c.145G>A	c.(145-147)GAA>AAA	p.E49K	TDRD10_uc001ffd.2_Missense_Mutation_p.E49K|TDRD10_uc001ffe.2_5'Flank	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	49	RRM.						nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			GTTGTAGGAGGAAATTCTGTA	0.423													20	43					0	0	1	0	0
TDRD10	126668	broad.mit.edu	37	1	154516910	154516910	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154516910C>T	uc009wow.2	+	10	1552	c.714C>T	c.(712-714)CCC>CCT	p.P238P	TDRD10_uc001ffd.2_Silent_p.P238P|TDRD10_uc001ffe.2_Silent_p.P159P	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	238	Tudor.						nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			AGCAGCAGCCCTACCTGGAGG	0.637													4	11					0	0	1	0	0
CHRNB2	1141	broad.mit.edu	37	1	154543767	154543767	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154543767G>A	uc001ffg.2	+	5	732	c.468G>A	c.(466-468)AAG>AAA	p.K156K		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	156	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	GCGCATGCAAGATTGAAGTAA	0.527													38	53					0	0	1	0	0
CHRNB2	1141	broad.mit.edu	37	1	154544019	154544019	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154544019C>T	uc001ffg.2	+	5	984	c.720C>T	c.(718-720)AAC>AAT	p.N240N		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	240	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	ACACCATCAACCTCATCATCC	0.572													51	125					0	0	1	0	0
ADAR	103	broad.mit.edu	37	1	154562857	154562857	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154562857G>A	uc001ffh.2	-	7	2499	c.2299C>T	c.(2299-2301)CGC>TGC	p.R767C	ADAR_uc001ffj.2_Missense_Mutation_p.R748C|ADAR_uc001ffi.2_Missense_Mutation_p.R767C|ADAR_uc001ffk.2_Missense_Mutation_p.R472C	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	767	DRBM 3.				adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		GGGAACCAGCGACCCCCAACT	0.522													27	74					0	0	1	0	0
KCNN3	3782	broad.mit.edu	37	1	154687474	154687474	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154687474C>T	uc001ffp.2	-	6	2021	c.1707G>A	c.(1705-1707)AAG>AAA	p.K569K	KCNN3_uc001ffo.2_Silent_p.K264K	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	574	Calmodulin-binding (By similarity).					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			CTGCAGCATTCTTGATCTAAG	0.393													29	99					0	0	1	0	0
KCNN3	3782	broad.mit.edu	37	1	154744507	154744507	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154744507G>A	uc001ffp.2	-	3	1706	c.1392C>T	c.(1390-1392)CTC>CTT	p.L464L	KCNN3_uc001ffo.2_Silent_p.L159L|KCNN3_uc009wox.1_Silent_p.L464L	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	469	Helical; Name=Segment S5; (Potential).					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			TGCTGAACACGAGCAGCACAG	0.557													23	67					0	0	1	0	0
KCNN3	3782	broad.mit.edu	37	1	154744764	154744764	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154744764G>A	uc001ffp.2	-	3	1449	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S	KCNN3_uc001ffo.2_Missense_Mutation_p.P74S|KCNN3_uc009wox.1_Missense_Mutation_p.P379S	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	384	Helical; Name=Segment S3; (Potential).					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			TACTCGCCAGGAATGGGGTGG	0.597													8	30					0	0	1	0	0
KCNN3	3782	broad.mit.edu	37	1	154841789	154841789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154841789C>T	uc001ffp.2	-	1	966	c.652G>A	c.(652-654)GAG>AAG	p.E218K	KCNN3_uc009wox.1_Missense_Mutation_p.E218K	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	223						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			ATGACGATCTCCGGGGGGTTG	0.652													31	58					0	0	1	0	0
PMVK	10654	broad.mit.edu	37	1	154897656	154897656	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154897656G>A	uc001ffq.2	-	5	851	c.528C>T	c.(526-528)CGC>CGT	p.R176R		NM_006556	NP_006547	Q15126	PMVK_HUMAN	phosphomevalonate kinase	176		ATP (Probable).			cholesterol biosynthetic process|protein phosphorylation	cytosol|peroxisome	ATP binding|phosphomevalonate kinase activity|protein binding				0	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.142)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GCTCCTCCAGGCGCTGTTCAA	0.547													54	236					0	0	1	0	0
PMVK	10654	broad.mit.edu	37	1	154898850	154898850	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154898850C>T	uc001ffq.2	-	4	745	c.422G>A	c.(421-423)CGG>CAG	p.R141Q		NM_006556	NP_006547	Q15126	PMVK_HUMAN	phosphomevalonate kinase	141		ATP (Probable).		R->M: Approximately 15-fold decrease in Vmax for MgATP and R-MVP. Approximately 50-fold increase in Km for MgATP and approximately 7-fold in Km for R-MVP.	cholesterol biosynthetic process|protein phosphorylation	cytosol|peroxisome	ATP binding|phosphomevalonate kinase activity|protein binding				0	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.142)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CACCCAGCCCCGCTGCTGTCG	0.632													17	34					0	0	1	0	0
PBXIP1	57326	broad.mit.edu	37	1	154917523	154917523	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154917523G>A	uc001ffr.2	-	11	2232	c.2173C>T	c.(2173-2175)CAC>TAC	p.H725Y	PBXIP1_uc001ffs.2_Missense_Mutation_p.H696Y|PBXIP1_uc010pep.1_Missense_Mutation_p.H570Y	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	725	His-rich.				cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGGTGGTGGTGGCTATGGCTG	0.642													20	47					0	0	1	0	0
FLAD1	80308	broad.mit.edu	37	1	154960590	154960590	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154960590C>T	uc001fgf.1	+	2	736	c.382C>T	c.(382-384)CAG>TAG	p.Q128*	FLAD1_uc001fgc.2_Nonsense_Mutation_p.Q29*|FLAD1_uc001fgd.1_Nonsense_Mutation_p.Q128*|FLAD1_uc001fge.1_Nonsense_Mutation_p.Q31*|FLAD1_uc001fgg.1_Nonsense_Mutation_p.Q31*|FLAD1_uc001fgh.1_5'UTR	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	128	Molybdenum cofactor biosynthesis protein- like.				FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGGACACACTCAGGACACCAA	0.562													46	148					0	0	1	0	0
FLAD1	80308	broad.mit.edu	37	1	154960885	154960885	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154960885C>T	uc001fgf.1	+	2	1031	c.677C>T	c.(676-678)TCT>TTT	p.S226F	FLAD1_uc001fgc.2_Missense_Mutation_p.S127F|FLAD1_uc001fgd.1_Missense_Mutation_p.S226F|FLAD1_uc001fge.1_Missense_Mutation_p.S129F|FLAD1_uc001fgg.1_Missense_Mutation_p.S129F|FLAD1_uc001fgh.1_5'UTR	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	226					FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GTGCCCTCCTCTGCCCGCCTG	0.567													29	54					0	0	1	0	0
ZBTB7B	51043	broad.mit.edu	37	1	154987313	154987313	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:154987313C>T	uc001fgk.3	+	3	335	c.177C>T	c.(175-177)TTC>TTT	p.F59F	ZBTB7B_uc009wpa.2_Silent_p.F59F|ZBTB7B_uc001fgj.3_Silent_p.F93F|ZBTB7B_uc010peq.1_Silent_p.F93F|ZBTB7B_uc001fgl.3_Silent_p.F59F	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	59	BTB.				cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GCCACTACTTCAAGAAGCTTT	0.652													10	122					0	0	1	0	0
DCST2	127579	broad.mit.edu	37	1	155002584	155002584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155002584C>T	uc001fgm.2	-	7	1233	c.1153G>A	c.(1153-1155)GAG>AAG	p.E385K	DCST2_uc009wpb.2_RNA	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	385	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CGCCTGGCCTCGTGAGCACTG	0.652													27	57					0	0	1	0	0
DCST2	127579	broad.mit.edu	37	1	155004051	155004051	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155004051G>A	uc001fgm.2	-	4	818	c.738C>T	c.(736-738)AGC>AGT	p.S246S	DCST2_uc009wpb.2_RNA|DCST1_uc010per.1_5'Flank|DCST1_uc001fgn.1_5'Flank|DCST1_uc010pes.1_5'Flank	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	246	Helical; (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TTTTCTCACGGCTGGCAAGTC	0.522													26	59					0	0	1	0	0
DCST1	149095	broad.mit.edu	37	1	155018608	155018608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155018608G>A	uc001fgn.1	+	12	1376	c.1280G>A	c.(1279-1281)CGG>CAG	p.R427Q	DCST1_uc010per.1_Missense_Mutation_p.R452Q|DCST1_uc010pes.1_Missense_Mutation_p.R402Q|uc001fgo.2_RNA	NM_152494	NP_689707	Q5T197	DCST1_HUMAN	DC-STAMP domain containing 1 isoform 1	427	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)|skin(1)	2	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			CAGGGCAAACGGACTCTGCTG	0.557													22	74					0	0	1	0	0
EFNA4	1945	broad.mit.edu	37	1	155039326	155039326	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155039326G>A	uc001fhd.2	+	2	321	c.234G>A	c.(232-234)GTG>GTA	p.V78V	EFNA3_uc010pew.1_Intron|EFNA4_uc001fhc.2_Silent_p.V78V|EFNA4_uc001fhe.2_Silent_p.V78V	NM_005227	NP_005218	P52798	EFNA4_HUMAN	ephrin A4 isoform a	78					cell-cell signaling	anchored to membrane|extracellular region|integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity				0	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			TGTACATGGTGGACTGGCCAG	0.612													20	43					0	0	1	0	0
TRIM46	80128	broad.mit.edu	37	1	155148391	155148391	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155148391G>A	uc001fhs.1	+	3	436	c.353G>A	c.(352-354)CGA>CAA	p.R118Q	RAG1AP1_uc010pey.1_Intron|KRTCAP2_uc001fho.2_5'Flank|KRTCAP2_uc001fhp.1_5'Flank|TRIM46_uc009wpe.1_RNA|TRIM46_uc010pez.1_Missense_Mutation_p.R105Q|TRIM46_uc001fhq.2_RNA|TRIM46_uc001fhr.2_Missense_Mutation_p.R118Q|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_5'UTR|TRIM46_uc001fhu.1_Missense_Mutation_p.R95Q|TRIM46_uc009wpg.1_Missense_Mutation_p.R105Q|TRIM46_uc009wpf.2_3'UTR|TRIM46_uc001fhv.3_Missense_Mutation_p.R105Q|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	118						intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GGGAGGAAGCGAGGTGCTTTG	0.582													90	192					0	0	1	0	0
TRIM46	80128	broad.mit.edu	37	1	155150523	155150523	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155150523G>A	uc001fhs.1	+	6	1038	c.955G>A	c.(955-957)GGG>AGG	p.G319R	RAG1AP1_uc010pey.1_Intron|TRIM46_uc009wpe.1_RNA|TRIM46_uc001fhq.2_RNA|TRIM46_uc001fhr.2_Missense_Mutation_p.G319R|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_Missense_Mutation_p.G193R|TRIM46_uc001fhu.1_Missense_Mutation_p.G296R|TRIM46_uc009wpg.1_Missense_Mutation_p.G306R|TRIM46_uc001fhv.3_Missense_Mutation_p.G306R|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	319						intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GCTGGTGCGGGGGCTGGGGGC	0.617													19	39					0	0	1	0	0
MTX1	4580	broad.mit.edu	37	1	155178747	155178747	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155178747G>A	uc001fjb.2	+	1	258	c.152G>A	c.(151-153)GGG>GAG	p.G51E	RAG1AP1_uc010pey.1_Intron|THBS3_uc001fix.2_5'Flank|THBS3_uc009wqi.2_5'Flank|THBS3_uc001fiz.2_5'Flank|THBS3_uc001fiy.2_5'Flank|THBS3_uc010pfu.1_5'Flank|THBS3_uc010pfv.1_5'Flank|THBS3_uc001fja.2_RNA|THBS3_uc009wqj.1_5'UTR|MTX1_uc001fjc.2_Missense_Mutation_p.G51E	NM_002455	NP_002446	Q13505	MTX1_HUMAN	metaxin 1 isoform 1	51					protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane	protein binding			skin(1)	1	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GCGCCTTCAGGGGTTCGGGGC	0.672													8	12					0	0	1	0	0
SCAMP3	10067	broad.mit.edu	37	1	155227093	155227093	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155227093G>T	uc001fjs.2	-	7	1015	c.762C>A	c.(760-762)ATC>ATA	p.I254I	RAG1AP1_uc010pey.1_Intron|FAM189B_uc001fjm.2_5'Flank|FAM189B_uc001fjn.2_5'Flank|FAM189B_uc001fjo.2_5'Flank|FAM189B_uc001fjp.2_5'Flank|FAM189B_uc001fjq.1_5'Flank|SCAMP3_uc001fjr.2_Silent_p.I101I|SCAMP3_uc001fju.2_Silent_p.I240I|SCAMP3_uc001fjv.2_Silent_p.I254I|SCAMP3_uc001fjt.2_Silent_p.I228I	NM_005698	NP_005689	O14828	SCAM3_HUMAN	secretory carrier membrane protein 3 isoform 1	254	Helical; (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane				ovary(3)	3	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CCCAACCTGGGATACCAATGG	0.463													8	23					1.76689e-08	1.77188e-08	1	1	0
SCAMP3	10067	broad.mit.edu	37	1	155227153	155227153	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155227153G>A	uc001fjs.2	-	7	955	c.702C>T	c.(700-702)TTC>TTT	p.F234F	RAG1AP1_uc010pey.1_Intron|FAM189B_uc001fjm.2_5'Flank|FAM189B_uc001fjn.2_5'Flank|FAM189B_uc001fjo.2_5'Flank|FAM189B_uc001fjp.2_5'Flank|FAM189B_uc001fjq.1_5'Flank|SCAMP3_uc001fjr.2_Silent_p.F81F|SCAMP3_uc001fju.2_Silent_p.F220F|SCAMP3_uc001fjv.2_Silent_p.F234F|SCAMP3_uc001fjt.2_Silent_p.F208F	NM_005698	NP_005689	O14828	SCAM3_HUMAN	secretory carrier membrane protein 3 isoform 1	234					post-Golgi vesicle-mediated transport|protein transport	integral to membrane				ovary(3)	3	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			AGAAGAAAACGAAGAAATTGA	0.488													6	22					0	0	1	0	0
CLK2	1196	broad.mit.edu	37	1	155234488	155234488	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155234488G>A	uc001fjy.2	-	9	1301	c.1011C>T	c.(1009-1011)CAC>CAT	p.H337H	RAG1AP1_uc010pey.1_Intron|SCAMP3_uc001fjs.2_5'Flank|SCAMP3_uc001fju.2_5'Flank|SCAMP3_uc001fjv.2_5'Flank|SCAMP3_uc001fjt.2_5'Flank|CLK2_uc001fjw.2_Silent_p.H336H|CLK2_uc001fjx.2_Silent_p.H109H|CLK2_uc009wqm.2_Silent_p.H337H	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	337	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TGGTGCTATGGTGCTCATGGT	0.547								Other_conserved_DNA_damage_response_genes					28	73					0	0	1	0	0
HCN3	57657	broad.mit.edu	37	1	155253804	155253804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155253804C>T	uc001fjz.1	+	3	756	c.748C>T	c.(748-750)CGC>TGC	p.R250C	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_5'UTR	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	250	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TGCTGTGGTTCGCATCTTCAA	0.572													31	88					0	0	1	0	0
HCN3	57657	broad.mit.edu	37	1	155258222	155258222	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155258222C>T	uc001fjz.1	+	8	2301	c.2293C>T	c.(2293-2295)CCC>TCC	p.P765S	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Missense_Mutation_p.P460S	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	765	Cytoplasmic (Potential).|Pro-rich.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GCCAGCCACACCCCGGGGTCT	0.587													7	95					0	0	1	0	0
PKLR	5313	broad.mit.edu	37	1	155264273	155264273	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155264273C>T	uc001fkb.3	-	6	1004	c.965G>A	c.(964-966)AGG>AAG	p.R322K	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Missense_Mutation_p.R291K	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	322					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	CAAGCCTCACCTCTTCACGCC	0.577													27	60					0	0	1	0	0
PKLR	5313	broad.mit.edu	37	1	155264286	155264286	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155264286C>T	uc001fkb.3	-	6	991	c.952G>A	c.(952-954)GAA>AAA	p.E318K	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Missense_Mutation_p.E287K	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	318					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	TTCACGCCTTCGTGGTTCTCA	0.582													22	62					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155340754	155340754	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155340754G>A	uc009wqq.2	-	11	6848	c.6368C>T	c.(6367-6369)TCC>TTC	p.S2123F	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.S2118F	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2123	AWS.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			AGTGTTGGGGGAACACTCAGC	0.393													20	50					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155408848	155408848	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155408848G>A	uc009wqq.2	-	5	5578	c.5098C>T	c.(5098-5100)CCC>TCC	p.P1700S	ASH1L_uc001fkt.2_Missense_Mutation_p.P1700S	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1700	Ser-rich.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CTTCGAGAGGGAACTCCGTTT	0.413													15	58					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155448284	155448284	+	Silent	SNP	G	A	A	rs148724344		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155448284G>A	uc009wqq.2	-	3	4857	c.4377C>T	c.(4375-4377)CCC>CCT	p.P1459P	ASH1L_uc001fkt.2_Silent_p.P1459P|ASH1L_uc009wqr.1_Silent_p.P1459P	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1459					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TGGAAAGGAGGGGAGTCCTGC	0.478													31	95					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155448522	155448522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155448522G>A	uc009wqq.2	-	3	4619	c.4139C>T	c.(4138-4140)CCA>CTA	p.P1380L	ASH1L_uc001fkt.2_Missense_Mutation_p.P1380L|ASH1L_uc009wqr.1_Missense_Mutation_p.P1380L	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1380	Pro-rich.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			ACCATAAGATGGATAGAATCC	0.453													23	52					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155448661	155448661	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155448661G>A	uc009wqq.2	-	3	4480	c.4000C>T	c.(4000-4002)CCC>TCC	p.P1334S	ASH1L_uc001fkt.2_Missense_Mutation_p.P1334S|ASH1L_uc009wqr.1_Missense_Mutation_p.P1334S	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1334					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			GGGTCTAAGGGGAAAGAAGGA	0.408													27	96					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155451384	155451384	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155451384G>A	uc009wqq.2	-	3	1757	c.1277C>T	c.(1276-1278)GCC>GTC	p.A426V	ASH1L_uc001fkt.2_Missense_Mutation_p.A426V|ASH1L_uc009wqr.1_Missense_Mutation_p.A426V	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	426					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CAGTGCTTCGGCTTTAAGGTT	0.418													46	81					0	0	1	0	0
YY1AP1	55249	broad.mit.edu	37	1	155630087	155630087	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155630087G>A	uc001fln.2	-	11	1776	c.1752C>T	c.(1750-1752)GCC>GCT	p.A584A	YY1AP1_uc001flg.2_Silent_p.A323A|YY1AP1_uc010pgg.1_Silent_p.A423A|YY1AP1_uc010pgh.1_Silent_p.A527A|YY1AP1_uc010pgi.1_Silent_p.A676A|YY1AP1_uc001flh.2_Silent_p.A656A|YY1AP1_uc009wqt.2_Silent_p.A507A|YY1AP1_uc001flk.2_Silent_p.A527A|YY1AP1_uc001fll.2_Silent_p.A538A|YY1AP1_uc009wqv.2_Silent_p.A255A|YY1AP1_uc001flm.2_Silent_p.A527A|YY1AP1_uc001fli.2_Silent_p.A538A|YY1AP1_uc009wqu.2_Silent_p.A371A|YY1AP1_uc001flj.2_Silent_p.A518A|YY1AP1_uc009wqw.2_Silent_p.A507A|YY1AP1_uc001flo.2_Silent_p.A472A|YY1AP1_uc001flp.2_Silent_p.A538A	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	584					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					TACAGCGAAAGGCCCTGGCTC	0.537													55	114					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155724215	155724215	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155724215G>A	uc001flz.2	-	28	5679	c.5582C>T	c.(5581-5583)TCC>TTC	p.S1861F	GON4L_uc001flx.1_5'Flank|GON4L_uc009wrg.1_Intron|GON4L_uc001fly.1_Missense_Mutation_p.S1861F|GON4L_uc009wrh.1_Missense_Mutation_p.S1861F|GON4L_uc001fma.1_Missense_Mutation_p.S1861F|GON4L_uc001fmb.3_Missense_Mutation_p.S1057F	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1861					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					CTTCAGCTTGGAATCTGGACC	0.542													21	178					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155774872	155774872	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155774872G>A	uc001flz.2	-	11	1610	c.1513C>T	c.(1513-1515)CCC>TCC	p.P505S	GON4L_uc001fly.1_Missense_Mutation_p.P505S|GON4L_uc009wrh.1_Missense_Mutation_p.P505S|GON4L_uc001fma.1_Missense_Mutation_p.P505S|GON4L_uc001fmc.2_Missense_Mutation_p.P505S|GON4L_uc001fmd.3_Missense_Mutation_p.P505S|GON4L_uc009wri.2_Missense_Mutation_p.P91S|GON4L_uc009wrj.1_Missense_Mutation_p.P20S|GON4L_uc001fme.2_Missense_Mutation_p.P333S|GON4L_uc001fmf.2_Missense_Mutation_p.P199S	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	505					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TGGCCCAGGGGAACATCTTTC	0.498													41	101					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155774885	155774885	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155774885G>A	uc001flz.2	-	11	1597	c.1500C>T	c.(1498-1500)CCC>CCT	p.P500P	GON4L_uc001fly.1_Silent_p.P500P|GON4L_uc009wrh.1_Silent_p.P500P|GON4L_uc001fma.1_Silent_p.P500P|GON4L_uc001fmc.2_Silent_p.P500P|GON4L_uc001fmd.3_Silent_p.P500P|GON4L_uc009wri.2_Silent_p.P86P|GON4L_uc009wrj.1_Silent_p.P15P|GON4L_uc001fme.2_Silent_p.P328P|GON4L_uc001fmf.2_Silent_p.P194P	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	500					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					CATCTTTCAGGGGCATCTTAG	0.483													31	94					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155790444	155790444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155790444G>A	uc001flz.2	-	6	1064	c.967C>T	c.(967-969)CCT>TCT	p.P323S	GON4L_uc001fly.1_Missense_Mutation_p.P323S|GON4L_uc009wrh.1_Missense_Mutation_p.P323S|GON4L_uc001fma.1_Missense_Mutation_p.P323S|GON4L_uc001fmc.2_Missense_Mutation_p.P323S|GON4L_uc001fmd.3_Missense_Mutation_p.P323S|GON4L_uc009wri.2_5'UTR|GON4L_uc001fme.2_Missense_Mutation_p.P151S|GON4L_uc001fmf.2_Missense_Mutation_p.P17S	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	323					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					GTCATTTTAGGCTCCTAAGGA	0.274													21	57					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155792079	155792079	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155792079G>A	uc001flz.2	-	4	983	c.886C>T	c.(886-888)CAT>TAT	p.H296Y	GON4L_uc001fly.1_Missense_Mutation_p.H296Y|GON4L_uc009wrh.1_Missense_Mutation_p.H296Y|GON4L_uc001fma.1_Missense_Mutation_p.H296Y|GON4L_uc001fmc.2_Missense_Mutation_p.H296Y|GON4L_uc001fmd.3_Missense_Mutation_p.H296Y|GON4L_uc009wri.2_5'UTR|GON4L_uc001fme.2_Missense_Mutation_p.H124Y|GON4L_uc001fmf.2_5'Flank	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	296					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TTACTCACATGAAGGATGTTT	0.418													49	100					0	0	1	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155931555	155931555	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:155931555G>A	uc001fmt.2	-	11	1483	c.1365C>T	c.(1363-1365)ACC>ACT	p.T455T	ARHGEF2_uc001fmr.2_Silent_p.T427T|ARHGEF2_uc001fms.2_Silent_p.T454T|ARHGEF2_uc001fmu.2_Silent_p.T499T|ARHGEF2_uc010pgt.1_Silent_p.T428T|ARHGEF2_uc010pgu.1_Silent_p.T500T	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	455					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CAGGCACTGGGGTTTGGGCCC	0.602													21	60					0	0	1	0	0
UBQLN4	56893	broad.mit.edu	37	1	156018388	156018388	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156018388G>A	uc001fna.2	-	5	828	c.804C>T	c.(802-804)GCC>GCT	p.A268A	UBQLN4_uc010pgx.1_Silent_p.A248A	NM_020131	NP_064516	Q9NRR5	UBQL4_HUMAN	ataxin-1 ubiquitin-like interacting protein	268						cytosol|endoplasmic reticulum membrane|nucleus	identical protein binding			pancreas(1)|skin(1)	2	Hepatocellular(266;0.133)|all_neural(408;0.195)					GGTTGCTCAGGGCCCGGTCCT	0.582													28	52					0	0	1	0	0
RAB25	57111	broad.mit.edu	37	1	156038175	156038175	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156038175C>T	uc001fnc.2	+	3	580	c.354C>T	c.(352-354)ATC>ATT	p.I118I		NM_020387	NP_065120	P57735	RAB25_HUMAN	RAB25	118					positive regulation of cell proliferation|protein transport|pseudopodium organization|small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle|pseudopodium membrane	GTP binding|identical protein binding				0	Hepatocellular(266;0.158)|all_neural(408;0.195)					AAGCCACGATCGTCGTCATGC	0.592													22	91					0	0	1	0	0
SEMA4A	64218	broad.mit.edu	37	1	156128250	156128250	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156128250C>T	uc001fnl.2	+	5	539	c.435C>T	c.(433-435)TTC>TTT	p.F145F	SEMA4A_uc009wrq.2_Silent_p.F145F|SEMA4A_uc001fnm.2_Silent_p.F145F|SEMA4A_uc001fnn.2_Intron|SEMA4A_uc001fno.2_Silent_p.F145F	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	145	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					GCGGCACCTTCGCCTTCAGCC	0.522													56	167					0	0	1	0	0
SEMA4A	64218	broad.mit.edu	37	1	156128253	156128253	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156128253C>T	uc001fnl.2	+	5	542	c.438C>T	c.(436-438)GCC>GCT	p.A146A	SEMA4A_uc009wrq.2_Silent_p.A146A|SEMA4A_uc001fnm.2_Silent_p.A146A|SEMA4A_uc001fnn.2_Intron|SEMA4A_uc001fno.2_Silent_p.A146A	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	146	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					GCACCTTCGCCTTCAGCCCTG	0.522													18	197					0	0	1	0	0
SMG5	23381	broad.mit.edu	37	1	156230268	156230268	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156230268G>A	uc001foc.3	-	15	2406	c.2257C>T	c.(2257-2259)CGG>TGG	p.R753W	SMG5_uc009wrv.2_Missense_Mutation_p.R238W	NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	753					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					AGCAGGGGCCGATCCGTGTCA	0.557													16	142					0	0	1	0	0
SMG5	23381	broad.mit.edu	37	1	156247733	156247733	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156247733T>A	uc001foc.3	-	3	429	c.280A>T	c.(280-282)ATC>TTC	p.I94F		NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	94					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					TTAGTCTTGATAAGCTGGATA	0.483													77	201					0	0	1	0	0
C1orf85	112770	broad.mit.edu	37	1	156264762	156264762	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156264762G>A	uc001foh.2	-	2	179	c.166C>T	c.(166-168)CTG>TTG	p.L56L	C1orf85_uc001fof.3_5'Flank|C1orf85_uc001fog.1_RNA|C1orf85_uc001foi.2_Silent_p.L56L|C1orf85_uc009wrx.2_Silent_p.L56L|C1orf85_uc001foj.2_Intron	NM_144580	NP_653181	Q8WWB7	NCUG1_HUMAN	kidney predominant protein NCU-G1 precursor	56	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter	cytosol|integral to membrane|lysosomal membrane|nucleus	ligand-dependent nuclear receptor activity|protein binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)	2	Hepatocellular(266;0.158)					ATATGAAGCAGGTTCTGCAGG	0.592													6	42					0	0	1	0	0
CCT3	7203	broad.mit.edu	37	1	156294849	156294849	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156294849G>A	uc001fol.1	-	6	556	c.336C>T	c.(334-336)TTC>TTT	p.F112F	CCT3_uc001fom.1_Silent_p.F111F|CCT3_uc001fon.1_Silent_p.F74F|CCT3_uc010phj.1_Silent_p.F66F|CCT3_uc010phk.1_Silent_p.F66F|CCT3_uc010phl.1_Silent_p.F66F	NM_005998	NP_005989	P49368	TCPG_HUMAN	chaperonin containing TCP1, subunit 3 isoform a	112					'de novo' posttranslational protein folding	cytoskeleton|cytosol|plasma membrane	ATP binding|unfolded protein binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					GCTGCTCCAGGAAGTGCTCAG	0.428													15	69					0	0	1	0	0
RHBG	57127	broad.mit.edu	37	1	156351641	156351641	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156351641G>A	uc010pho.1	+	6	923	c.885G>A	c.(883-885)GGG>GGA	p.G295G	RHBG_uc010phm.1_Silent_p.G133G|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Silent_p.G226G|RHBG_uc009wrz.2_Silent_p.G263G|RHBG_uc001for.2_Silent_p.G265G	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	295	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					TTGTGGTGGGGACCTCAAGTG	0.557													24	64					0	0	1	0	0
RHBG	57127	broad.mit.edu	37	1	156351651	156351651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156351651G>A	uc010pho.1	+	6	933	c.895G>A	c.(895-897)GAA>AAA	p.E299K	RHBG_uc010phm.1_Missense_Mutation_p.E137K|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Missense_Mutation_p.E230K|RHBG_uc009wrz.2_Missense_Mutation_p.E267K|RHBG_uc001for.2_Missense_Mutation_p.E269K	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	299	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					GACCTCAAGTGAAATGATGCT	0.557													24	66					0	0	1	0	0
IQGAP3	128239	broad.mit.edu	37	1	156496304	156496304	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156496304G>A	uc001fpf.2	-	38	4945	c.4870C>T	c.(4870-4872)CTC>TTC	p.L1624F		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1624					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TTCTTGTTGAGGAGGAAGATG	0.488													13	52					0	0	1	0	0
IQGAP3	128239	broad.mit.edu	37	1	156498719	156498719	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156498719G>A	uc001fpf.2	-	35	4635	c.4560C>T	c.(4558-4560)GCC>GCT	p.A1520A		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1520					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGGAGTCGGGGGCCAGGTGGT	0.572													17	69					0	0	1	0	0
TTC24	164118	broad.mit.edu	37	1	156554962	156554962	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156554962G>A	uc009wsc.1	+	6	695	c.555G>A	c.(553-555)CAG>CAA	p.Q185Q		NM_001105669	NP_001099139	A2A3L6	TTC24_HUMAN	tetratricopeptide repeat domain 24	465							binding			pancreas(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGGGCCACCAGAAGAAAAAAG	0.577													20	29					0	0	1	0	0
TTC24	164118	broad.mit.edu	37	1	156555535	156555535	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156555535C>T	uc009wsc.1	+	7	787	c.647C>T	c.(646-648)TCG>TTG	p.S216L		NM_001105669	NP_001099139	A2A3L6	TTC24_HUMAN	tetratricopeptide repeat domain 24	496							binding			pancreas(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GTGAATCATTCGCACCATCTA	0.512													35	84					0	0	1	0	0
NES	10763	broad.mit.edu	37	1	156640282	156640282	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156640282G>A	uc001fpq.2	-	4	3831	c.3698C>T	c.(3697-3699)CCT>CTT	p.P1233L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1233	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTGAGGCCCAGGGGCATCTTC	0.637													68	141					0	0	1	0	0
NES	10763	broad.mit.edu	37	1	156642416	156642416	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156642416C>T	uc001fpq.2	-	4	1697	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	522	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCCCATATTTCCTGCTGCAAG	0.483													26	203					0	0	1	0	0
NES	10763	broad.mit.edu	37	1	156642565	156642565	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156642565G>A	uc001fpq.2	-	4	1548	c.1415C>T	c.(1414-1416)CCT>CTT	p.P472L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	472	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGAGTGGTCAGGGCTGAGGGG	0.612													20	180					0	0	1	0	0
NES	10763	broad.mit.edu	37	1	156642586	156642586	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156642586G>A	uc001fpq.2	-	4	1527	c.1394C>T	c.(1393-1395)TCC>TTC	p.S465F		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	465	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGGTGCCAAGGAGGCATGGTC	0.627													44	104					0	0	1	0	0
NES	10763	broad.mit.edu	37	1	156646890	156646890	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156646890G>A	uc001fpq.2	-	1	300	c.167C>T	c.(166-168)GCC>GTC	p.A56V		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	56	Coil 1B.|Rod.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTCGTCGTCGGCATGCGCCCG	0.721													8	15					0	0	1	0	0
ISG20L2	81875	broad.mit.edu	37	1	156697137	156697137	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156697137G>A	uc001fps.1	-	1	569	c.308C>T	c.(307-309)CCT>CTT	p.P103L	ISG20L2_uc001fpt.1_Missense_Mutation_p.P103L|C1orf66_uc001fpu.2_5'Flank|C1orf66_uc001fpv.2_5'Flank	NM_030980	NP_112242	Q9H9L3	I20L2_HUMAN	interferon stimulated exonuclease gene	103					ribosome biogenesis	nucleolus	exonuclease activity|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGAAGGGGCAGGGGTCAACCA	0.517											OREG0013885	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	85					0	0	1	0	0
PRCC	5546	broad.mit.edu	37	1	156756843	156756843	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156756843C>T	uc001fqa.2	+	3	1250	c.960C>T	c.(958-960)CCC>CCT	p.P320P	PRCC_uc001fqb.2_Silent_p.P320P	NM_005973	NP_005964	Q92733	PRCC_HUMAN	papillary renal cell carcinoma	320					cell cycle|mitotic cell cycle checkpoint	nucleus	protein binding		PRCC/TFE3(25)	kidney(25)|central_nervous_system(2)	27	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCAATGCCCCCCTTGAATTCA	0.572			T	TFE3	papillary renal 								82	168					0	0	1	0	0
PRCC	5546	broad.mit.edu	37	1	156761529	156761529	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156761529C>T	uc001fqa.2	+	4	1414	c.1124C>T	c.(1123-1125)GCC>GTC	p.A375V	PRCC_uc001fqb.2_Intron	NM_005973	NP_005964	Q92733	PRCC_HUMAN	papillary renal cell carcinoma	375					cell cycle|mitotic cell cycle checkpoint	nucleus	protein binding		PRCC/TFE3(25)	kidney(25)|central_nervous_system(2)	27	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CAGGACCCGGCCCTGGTCCCC	0.537			T	TFE3	papillary renal 								19	84					0	0	1	0	0
SH2D2A	9047	broad.mit.edu	37	1	156785878	156785878	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156785878C>T	uc001fqd.2	-	2	183	c.43G>A	c.(43-45)GAA>AAA	p.E15K	SH2D2A_uc001fqc.1_5'UTR|SH2D2A_uc009wsh.2_Missense_Mutation_p.E15K|SH2D2A_uc001fqe.2_Intron|SH2D2A_uc010phs.1_Missense_Mutation_p.E15K|NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_003975	NP_003966	Q9NP31	SH22A_HUMAN	SH2 domain protein 2A isoform 2	15					angiogenesis|cell differentiation|signal transduction	cytoplasm|soluble fraction	SH3 domain binding|SH3/SH2 adaptor activity				0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					ATGGGGGCTTCGTGACTCCCT	0.612													4	29					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156810752	156810752	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156810752C>T	uc010pht.1	-	22	4061	c.3807G>A	c.(3805-3807)CGG>CGA	p.R1269R	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1269	Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCAGGGAGCCCCGGGCCCCCC	0.627													7	20					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156811288	156811288	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156811288G>A	uc010pht.1	-	21	3814	c.3560C>T	c.(3559-3561)ACC>ATC	p.T1187I	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1187	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TTCTGCCAGGGTCACAATCTC	0.612													29	58					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156812901	156812901	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156812901G>A	uc010pht.1	-	17	3275	c.3021C>T	c.(3019-3021)TCC>TCT	p.S1007S	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1007	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCACGGGTGTGGACTCCTCTC	0.572													16	52					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156814576	156814576	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156814576G>A	uc010pht.1	-	13	2751	c.2497C>T	c.(2497-2499)CTT>TTT	p.L833F	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	833	Fibronectin type-III 3.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CAGCGCAGAAGGACACTGTTC	0.617													22	55					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156814893	156814893	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156814893G>A	uc010pht.1	-	12	2666	c.2412C>T	c.(2410-2412)TTC>TTT	p.F804F	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	804	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCGCAAAGACGAAGGTGGCGG	0.632													3	1					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156815774	156815774	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156815774C>T	uc010pht.1	-	9	2202	c.1948G>A	c.(1948-1950)GAC>AAC	p.D650N	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	650	Fibronectin type-III 2.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					AGGTAGAGGTCGCCGTCCTCT	0.706													15	26					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156816391	156816391	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156816391G>A	uc010pht.1	-	8	1984	c.1730C>T	c.(1729-1731)GCC>GTC	p.A577V	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	577	Fibronectin type-III 1.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TAGCGTGATGGCCCGCACAAA	0.612													18	38					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156816441	156816441	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156816441C>T	uc010pht.1	-	8	1934	c.1680G>A	c.(1678-1680)GTG>GTA	p.V560V	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	560	Fibronectin type-III 1.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					AGGCTAGGGTCACCCCTGGCT	0.612													8	62					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156819153	156819153	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156819153G>A	uc010pht.1	-	6	1583	c.1329C>T	c.(1327-1329)GCC>GCT	p.A443A	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	443					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCGGGTTGAAGGCGAAGTAGA	0.602													43	106					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156828383	156828383	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156828383C>T	uc010pht.1	-	1	285	c.31G>A	c.(31-33)GCA>ACA	p.A11T	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Missense_Mutation_p.A11T|NTRK1_uc001fqh.1_5'Flank|NTRK1_uc001fqi.1_5'Flank|NTRK1_uc009wsk.1_5'Flank	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	11					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGCAGGCATGCTCCCCAGGGC	0.617													30	80					0	0	1	0	0
NTRK1	4914	broad.mit.edu	37	1	156834179	156834179	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156834179G>A	uc001fqh.1	+	2	302	c.246G>A	c.(244-246)CTG>CTA	p.L82L	NTRK1_uc001fqf.1_Silent_p.L52L|NTRK1_uc009wsi.1_5'UTR|NTRK1_uc001fqi.1_Silent_p.L82L|NTRK1_uc009wsk.1_Silent_p.L82L	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	82	Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	TGCAGCATCTGGAGCTCCGTG	0.617			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			14	36					0	0	1	0	0
NTRK1	4914	broad.mit.edu	37	1	156834207	156834207	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156834207G>A	uc001fqh.1	+	2	330	c.274G>A	c.(274-276)GAG>AAG	p.E92K	NTRK1_uc001fqf.1_Missense_Mutation_p.E62K|NTRK1_uc009wsi.1_5'UTR|NTRK1_uc001fqi.1_Missense_Mutation_p.E92K|NTRK1_uc009wsk.1_Missense_Mutation_p.E92K	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	92	LRR 1.|Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	GGGCCTGGGGGAGCTGAGAAA	0.637			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			12	29					0	0	1	0	0
NTRK1	4914	broad.mit.edu	37	1	156845925	156845925	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156845925G>A	uc001fqh.1	+	13	1611	c.1555G>A	c.(1555-1557)GGC>AGC	p.G519S	NTRK1_uc001fqf.1_Missense_Mutation_p.G483S|NTRK1_uc009wsi.1_Missense_Mutation_p.G218S|NTRK1_uc001fqi.1_Missense_Mutation_p.G513S|NTRK1_uc009wsk.1_Missense_Mutation_p.G516S	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	519	Cytoplasmic (Potential).|ATP (By similarity).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	GCTGGGGGAGGGCGCCTTTGG	0.637			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			9	92					0	0	1	0	0
PEAR1	375033	broad.mit.edu	37	1	156875149	156875149	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156875149G>A	uc001fqj.1	+	4	356	c.240G>A	c.(238-240)GTG>GTA	p.V80V	PEAR1_uc009wsl.1_5'Flank|PEAR1_uc001fqk.1_5'Flank	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	80	EMI.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GTCAGGTGGTGAAGACGGACC	0.657													8	38					0	0	1	0	0
PEAR1	375033	broad.mit.edu	37	1	156877930	156877930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156877930G>A	uc001fqj.1	+	9	1029	c.913G>A	c.(913-915)GAG>AAG	p.E305K	PEAR1_uc009wsl.1_Missense_Mutation_p.E106K|PEAR1_uc001fqk.1_5'UTR	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	305						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GTGCCGGGAGGAGTGCCCGGT	0.711													4	14					0	0	1	0	0
PEAR1	375033	broad.mit.edu	37	1	156882382	156882382	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156882382C>T	uc001fqj.1	+	17	2293	c.2177C>T	c.(2176-2178)CCC>CTC	p.P726L	PEAR1_uc001fqk.1_Missense_Mutation_p.P351L	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	726						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TGTGTATGTCCCCCAGGGCAC	0.602													21	55					0	0	1	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156909560	156909560	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156909560G>A	uc001fqo.2	-	36	4796	c.3756C>T	c.(3754-3756)TCC>TCT	p.S1252S	ARHGEF11_uc010phu.1_Silent_p.S668S|ARHGEF11_uc001fqn.2_Silent_p.S1292S	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	1252					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CTTGCCCTGGGGAGCCTGGGT	0.642													15	43					0	0	1	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156917205	156917205	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156917205G>A	uc001fqo.2	-	25	3299	c.2259C>T	c.(2257-2259)CTC>CTT	p.L753L	ARHGEF11_uc010phu.1_Silent_p.L169L|ARHGEF11_uc001fqn.2_Silent_p.L793L	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	753	DH.				actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCAGGACCCGGAGTGTGCGCA	0.562													15	26					0	0	1	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156937867	156937867	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156937867G>A	uc001fqo.2	-	10	1795	c.755C>T	c.(754-756)CCT>CTT	p.P252L	ARHGEF11_uc001fqn.2_Missense_Mutation_p.P292L	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	252					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGAGGTTCGAGGACTGTCTAG	0.567													30	31					0	0	1	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156955916	156955916	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:156955916G>T	uc001fqo.2	-	2	1122	c.82C>A	c.(82-84)CCT>ACT	p.P28T	ARHGEF11_uc001fqn.2_Missense_Mutation_p.P28T	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	28					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TGGTGGGAAGGGGACTTGCGC	0.453													32	83					3.03874e-20	3.05525e-20	1	1	0
FCRL5	83416	broad.mit.edu	37	1	157485638	157485638	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157485638C>T	uc001fqu.2	-	16	2996	c.2838G>A	c.(2836-2838)AGG>AGA	p.R946R	FCRL5_uc009wsm.2_Missense_Mutation_p.G943E	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	946	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				TCACCTTGTTCCTGAGATGCC	0.602													26	55					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157494322	157494322	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157494322G>A	uc001fqu.2	-	10	2144	c.1986C>T	c.(1984-1986)ACC>ACT	p.T662T	FCRL5_uc009wsm.2_Silent_p.T662T|FCRL5_uc010phv.1_Silent_p.T662T|FCRL5_uc010phw.1_Silent_p.T577T	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	662	Extracellular (Potential).|Ig-like C2-type 7.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GAGCCCTGAAGGTGAGGATGG	0.507													22	38					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157497642	157497642	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157497642G>A	uc001fqu.2	-	9	1883	c.1725C>T	c.(1723-1725)GCC>GCT	p.A575A	FCRL5_uc009wsm.2_Silent_p.A575A|FCRL5_uc010phv.1_Silent_p.A575A|FCRL5_uc010phw.1_Silent_p.A490A	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	575	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CCACAGCCTGGGCCCTGGGAA	0.532													33	106					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157509152	157509152	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157509152G>A	uc001fqu.2	-	7	1284	c.1126C>T	c.(1126-1128)CCC>TCC	p.P376S	FCRL5_uc009wsm.2_Missense_Mutation_p.P376S|FCRL5_uc010phv.1_Missense_Mutation_p.P376S|FCRL5_uc010phw.1_Missense_Mutation_p.P291S|FCRL5_uc001fqv.1_Missense_Mutation_p.P376S|FCRL5_uc010phx.1_Missense_Mutation_p.P127S	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	376	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				TGAGACACGGGAACTGAGAGA	0.383													13	43					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157514069	157514069	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157514069G>A	uc001fqu.2	-	5	985	c.827C>T	c.(826-828)TCC>TTC	p.S276F	FCRL5_uc009wsm.2_Missense_Mutation_p.S276F|FCRL5_uc010phv.1_Missense_Mutation_p.S276F|FCRL5_uc010phw.1_Missense_Mutation_p.S191F|FCRL5_uc001fqv.1_Missense_Mutation_p.S276F|FCRL5_uc010phx.1_Missense_Mutation_p.S27F	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	276	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CTGTATCCAGGATCTCGGGCT	0.507													26	155					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157516898	157516898	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157516898G>A	uc001fqu.2	-	3	300	c.142C>T	c.(142-144)CGC>TGC	p.R48C	FCRL5_uc009wsm.2_Missense_Mutation_p.R48C|FCRL5_uc010phv.1_Missense_Mutation_p.R48C|FCRL5_uc010phw.1_Intron|FCRL5_uc001fqv.1_Missense_Mutation_p.R48C|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	48	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GAGTAGAAGCGAAATCCCTTG	0.478													35	96					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157648592	157648592	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157648592C>T	uc001frb.2	-	15	2405	c.2113G>A	c.(2113-2115)GGG>AGG	p.G705R	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.G705R|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.G431R|FCRL3_uc001frc.1_Missense_Mutation_p.G705R	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	705	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CTAGCCTCCCCTGCAGAGTCG	0.468													18	46					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157650834	157650834	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157650834G>A	uc001frb.2	-	12	2186	c.1894C>T	c.(1894-1896)CCT>TCT	p.P632S	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.P632S|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.P358S|FCRL3_uc001frc.1_Missense_Mutation_p.P632S	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	632	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					GGCTCTTGAGGGTCTATCCTG	0.542													16	36					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157659643	157659643	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157659643G>A	uc001frb.2	-	10	2047	c.1755C>T	c.(1753-1755)CTC>CTT	p.L585L	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.L585L|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Silent_p.L311L|FCRL3_uc001frc.1_Silent_p.L585L	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	585	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CAGCAAGGACGAGGATGCTGA	0.567													30	49					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157665230	157665230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157665230C>T	uc001frb.2	-	8	1592	c.1300G>A	c.(1300-1302)GGA>AGA	p.G434R	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.G434R|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.G160R|FCRL3_uc001frc.1_Missense_Mutation_p.G434R	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	434	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					AAGGAGGCTCCTCCTCCAGAG	0.562													45	150					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157667107	157667107	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157667107G>A	uc001frb.2	-	6	959	c.667C>T	c.(667-669)CAG>TAG	p.Q223*	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Nonsense_Mutation_p.Q223*|FCRL3_uc009wsn.2_Intron|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Nonsense_Mutation_p.Q223*	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	223	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					AATTGCAGCTGGACATCTGGC	0.587													37	70					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157667199	157667199	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157667199G>A	uc001frb.2	-	6	867	c.575C>T	c.(574-576)CCT>CTT	p.P192L	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.P192L|FCRL3_uc009wsn.2_Intron|FCRL3_uc009wso.2_Intron|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Missense_Mutation_p.P192L	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	192	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					TCTCAGCACAGGATGTAGAAA	0.527													11	68					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157667561	157667561	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157667561G>A	uc001frb.2	-	5	739	c.447C>T	c.(445-447)ATC>ATT	p.I149I	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.I149I|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Silent_p.I149I	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	149	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					AATTCACTGTGATCTTCTCTA	0.338													51	118					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157669500	157669500	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157669500G>A	uc001frb.2	-	3	326	c.34C>T	c.(34-36)CCT>TCT	p.P12S	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.P12S|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'Flank|FCRL3_uc001frc.1_Missense_Mutation_p.P12S	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	12						integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					TCTCTTCCAGGAGCTGTGAGG	0.468													11	25					0	0	1	0	0
FCRL2	79368	broad.mit.edu	37	1	157737078	157737078	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157737078C>T	uc001fre.2	-	6	1164	c.1105G>A	c.(1105-1107)GAG>AAG	p.E369K	FCRL2_uc001frd.2_Missense_Mutation_p.E116K|FCRL2_uc010phz.1_Missense_Mutation_p.E369K|FCRL2_uc009wsp.2_Intron	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	369	Ig-like C2-type 4.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TTGTTGGCCTCACAGGAGTAG	0.567													30	129					0	0	1	0	0
FCRL2	79368	broad.mit.edu	37	1	157737198	157737198	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157737198G>A	uc001fre.2	-	6	1044	c.985C>T	c.(985-987)CCA>TCA	p.P329S	FCRL2_uc001frd.2_Missense_Mutation_p.P76S|FCRL2_uc010phz.1_Missense_Mutation_p.P329S|FCRL2_uc009wsp.2_Intron	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	329	Ig-like C2-type 4.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TACAAGATTGGGGGAGAGCCT	0.597													37	89					0	0	1	0	0
FCRL2	79368	broad.mit.edu	37	1	157740417	157740417	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157740417C>T	uc001fre.2	-	3	151	c.92G>A	c.(91-93)GGA>GAA	p.G31E	FCRL2_uc001frd.2_5'Flank|FCRL2_uc010phz.1_Missense_Mutation_p.G31E|FCRL2_uc009wsp.2_Missense_Mutation_p.G31E|FCRL2_uc010pia.1_Missense_Mutation_p.G31E	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	31	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GATGCTGTCTCCTTCGAAGAC	0.453													6	52					0	0	1	0	0
FCRL1	115350	broad.mit.edu	37	1	157771953	157771953	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157771953C>T	uc001frg.2	-	5	751	c.638G>A	c.(637-639)AGG>AAG	p.R213K	FCRL1_uc001frf.2_Splice_Site|FCRL1_uc001frh.2_Missense_Mutation_p.R213K|FCRL1_uc001fri.2_Missense_Mutation_p.R213K|FCRL1_uc001frj.2_Splice_Site	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	213	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CCTGGGAGCCCTGAGCATGAG	0.567													28	44					0	0	1	0	0
FCRL1	115350	broad.mit.edu	37	1	157772251	157772251	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157772251C>T	uc001frg.2	-	4	636	c.523G>A	c.(523-525)GAG>AAG	p.E175K	FCRL1_uc001frf.2_5'Flank|FCRL1_uc001frh.2_Missense_Mutation_p.E175K|FCRL1_uc001fri.2_Missense_Mutation_p.E175K|FCRL1_uc001frj.2_Intron	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	175	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GCATCACTCTCCCTCACTGAA	0.488													28	72					0	0	1	0	0
CD5L	922	broad.mit.edu	37	1	157803081	157803081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157803081G>A	uc001frk.3	-	5	1083	c.940C>T	c.(940-942)CGT>TGT	p.R314C		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	314	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CCTGAGCAACGAACATTATCC	0.582													38	78					0	0	1	0	0
CD5L	922	broad.mit.edu	37	1	157803146	157803146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157803146G>A	uc001frk.3	-	5	1018	c.875C>T	c.(874-876)TCT>TTT	p.S292F		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	292	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GAAGGAGGGAGAGAGGGACTT	0.587													15	125					0	0	1	0	0
CD5L	922	broad.mit.edu	37	1	157804377	157804377	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157804377C>T	uc001frk.3	-	4	681	c.538G>A	c.(538-540)GGA>AGA	p.G180R		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	180	SRCR 2.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CTCCCACATCCCAGCTGCCGG	0.587													24	86					0	0	1	0	0
CD5L	922	broad.mit.edu	37	1	157805786	157805787	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:157805786_157805787CC>TT	uc001frk.3	-	3	357_358	c.214_215GG>AA	c.(214-216)GGA>AAA	p.G72K		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	72	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			ACTAGGGGTTCCGCTGGCAGCT	0.545													28	249					0	0	1	0	0
CD1D	912	broad.mit.edu	37	1	158151263	158151263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158151263C>T	uc001frr.2	+	3	579	c.80C>T	c.(79-81)CCC>CTC	p.P27L	CD1D_uc009wsr.1_Missense_Mutation_p.P27L|CD1D_uc009wss.2_Missense_Mutation_p.P27L|CD1D_uc009wst.1_Intron	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	27	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					AGGCTTTTCCCCCTCCGCTGC	0.592													141	368					0	0	1	0	0
CD1D	912	broad.mit.edu	37	1	158151911	158151911	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158151911G>A	uc001frr.2	+	4	917	c.418G>A	c.(418-420)GAT>AAT	p.D140N	CD1D_uc009wsr.1_Missense_Mutation_p.D140N|CD1D_uc009wss.2_Missense_Mutation_p.D140N|CD1D_uc009wst.1_Missense_Mutation_p.D36N	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	140	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					TCAAGGAAAAGATATCCTGAG	0.522													15	278					0	0	1	0	0
CD1D	912	broad.mit.edu	37	1	158151916	158151916	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158151916C>T	uc001frr.2	+	4	922	c.423C>T	c.(421-423)ATC>ATT	p.I141I	CD1D_uc009wsr.1_Silent_p.I141I|CD1D_uc009wss.2_Silent_p.I141I|CD1D_uc009wst.1_Silent_p.I37I	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	141	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					GAAAAGATATCCTGAGTTTCC	0.517													109	185					0	0	1	0	0
CD1D	912	broad.mit.edu	37	1	158152041	158152041	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158152041C>T	uc001frr.2	+	4	1047	c.548C>T	c.(547-549)ACC>ATC	p.T183I	CD1D_uc009wsr.1_Missense_Mutation_p.T183I|CD1D_uc009wss.2_Missense_Mutation_p.T183I|CD1D_uc009wst.1_Missense_Mutation_p.T79I	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	183	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					CTTAATGGCACCTGCCCCCAA	0.552													52	211					0	0	1	0	0
CD1A	909	broad.mit.edu	37	1	158224974	158224974	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158224974G>A	uc001frt.2	+	2	692	c.159G>A	c.(157-159)CAG>CAA	p.Q53Q		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	53	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	GTGATTTGCAGACTCATACCT	0.498													20	78					0	0	1	0	0
CD1A	909	broad.mit.edu	37	1	158225851	158225851	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158225851G>A	uc001frt.2	+	3	916	c.383G>A	c.(382-384)GGA>GAA	p.G128E		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	128	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	AAGGTCTCAGGAAGCTTCTTG	0.438													31	106					0	0	1	0	0
CD1A	909	broad.mit.edu	37	1	158226026	158226026	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158226026C>T	uc001frt.2	+	3	1091	c.558C>T	c.(556-558)TTC>TTT	p.F186F		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	186	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	GCCCACGTTTCATCTTGGGTC	0.463													24	86					0	0	1	0	0
CD1A	909	broad.mit.edu	37	1	158226032	158226033	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158226032_158226033GG>AA	uc001frt.2	+	3	1097_1098	c.564_565GG>AA	c.(562-567)TTGGGT>TTAAGT	p.G189S		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	189	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	GTTTCATCTTGGGTCTTCTTGA	0.46													17	86					0	0	1	0	0
CD1A	909	broad.mit.edu	37	1	158226733	158226733	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158226733C>T	uc001frt.2	+	4	1295	c.762C>T	c.(760-762)CCC>CCT	p.P254P		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	254	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	ACATCTTGCCCAGTGCTGATG	0.622													23	109					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158259858	158259858	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158259858C>T	uc001fru.2	+	1	296	c.4C>T	c.(4-6)CTG>TTG	p.L2L	CD1C_uc001frv.2_5'Flank	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	2					antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					AAATGACATGCTGTTTCTGCA	0.438													27	79					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158262543	158262543	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158262543T>C	uc001fru.2	+	4	1060	c.768T>C	c.(766-768)CCT>CCC	p.P256P	CD1C_uc001frv.2_Silent_p.P59P	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	256	Extracellular (Potential).|Ig-like.				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					ATATTCTTCCTAATGCTGATG	0.527													44	95					0	0	1	0	0
CD1B	910	broad.mit.edu	37	1	158299230	158299230	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158299230C>T	uc001frx.2	-	4	924	c.816G>A	c.(814-816)GGG>GGA	p.G272G	CD1B_uc001frw.2_Intron	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	272	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					CAGCCGCCTCCCCATCTGCCA	0.587													24	84					0	0	1	0	0
CD1E	913	broad.mit.edu	37	1	158323823	158323823	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158323823G>A	uc001fse.2	+	1	284	c.45G>A	c.(43-45)GGG>GGA	p.G15G	CD1E_uc010pid.1_Intron|CD1E_uc010pie.1_Silent_p.G15G|CD1E_uc010pif.1_Silent_p.G15G|CD1E_uc001fsd.2_Silent_p.G15G|CD1E_uc001fsk.2_Silent_p.G15G|CD1E_uc001fsj.2_Silent_p.G15G|CD1E_uc001fsc.2_Silent_p.G15G|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Silent_p.G15G|CD1E_uc001fsf.2_Silent_p.G15G|CD1E_uc001fry.2_Silent_p.G15G|CD1E_uc001fsg.2_Silent_p.G15G|CD1E_uc001fsh.2_Silent_p.G15G|CD1E_uc001fsi.2_Silent_p.G15G|CD1E_uc009wsv.2_Silent_p.G15G|CD1E_uc001frz.2_Silent_p.G15G|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	15					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					GCTGTCCTGGGGAAAATACAG	0.542													6	59					0	0	1	0	0
CD1E	913	broad.mit.edu	37	1	158325254	158325254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158325254C>T	uc001fse.2	+	3	759	c.520C>T	c.(520-522)CGC>TGC	p.R174C	CD1E_uc010pid.1_Missense_Mutation_p.R172C|CD1E_uc010pie.1_Missense_Mutation_p.R75C|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.R174C|CD1E_uc001fsk.2_Intron|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.R174C|CD1E_uc001fry.2_Missense_Mutation_p.R174C|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.R174C|CD1E_uc009wsv.2_Missense_Mutation_p.R75C|CD1E_uc001frz.2_Intron|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	174					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					AGTGCTCAATCGCTACCTAGA	0.507													31	67					0	0	1	0	0
CD1E	913	broad.mit.edu	37	1	158325305	158325305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158325305C>T	uc001fse.2	+	3	810	c.571C>T	c.(571-573)CCT>TCT	p.P191S	CD1E_uc010pid.1_Missense_Mutation_p.P189S|CD1E_uc010pie.1_Missense_Mutation_p.P92S|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.P191S|CD1E_uc001fsk.2_Intron|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.P191S|CD1E_uc001fry.2_Missense_Mutation_p.P191S|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.P191S|CD1E_uc009wsv.2_Missense_Mutation_p.P92S|CD1E_uc001frz.2_Intron|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	191	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					TCACACCTGCCCTCGATTTCT	0.502													4	45					0	0	1	0	0
CD1E	913	broad.mit.edu	37	1	158326659	158326659	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158326659G>A	uc001fse.2	+	6	1379	c.1140G>A	c.(1138-1140)TGG>TGA	p.W380*	CD1E_uc001fsd.2_3'UTR|CD1E_uc001fsk.2_Nonsense_Mutation_p.W290*|CD1E_uc001fsj.2_Nonsense_Mutation_p.W223*|CD1E_uc001fsc.2_Nonsense_Mutation_p.W191*|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Nonsense_Mutation_p.W136*|CD1E_uc001fsf.2_Nonsense_Mutation_p.W368*|CD1E_uc001fry.2_Nonsense_Mutation_p.W313*|CD1E_uc001fsg.2_3'UTR|CD1E_uc001fsh.2_Nonsense_Mutation_p.W179*|CD1E_uc001fsi.2_3'UTR|CD1E_uc009wsv.2_Nonsense_Mutation_p.W281*|CD1E_uc001frz.2_Nonsense_Mutation_p.W278*|CD1E_uc009wsw.2_3'UTR	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	380					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					TGAAGAAGTGGAAGACACGCC	0.428													26	116					0	0	1	0	0
OR10T2	128360	broad.mit.edu	37	1	158368677	158368677	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158368677G>A	uc010pih.1	-	1	580	c.580C>T	c.(580-582)CAT>TAT	p.H194Y		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					TCTTTCACATGGGTGTCAGTG	0.438													15	43					0	0	1	0	0
OR10T2	128360	broad.mit.edu	37	1	158368777	158368777	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158368777G>A	uc010pih.1	-	1	480	c.480C>T	c.(478-480)GCC>GCT	p.A160A		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					TGAGGTTGGTGGCCACCAAAG	0.473													41	94					0	0	1	0	0
OR10T2	128360	broad.mit.edu	37	1	158369140	158369140	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158369140G>A	uc010pih.1	-	1	117	c.117C>T	c.(115-117)ATC>ATT	p.I39I		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					TGGCCACCAGGATTGTCAAGT	0.483													24	36					0	0	1	0	0
OR10K2	391107	broad.mit.edu	37	1	158389857	158389857	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158389857G>A	uc010pii.1	-	1	800	c.800C>T	c.(799-801)TCC>TTC	p.S267F		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					CTGGCTTGAGGAGTAGTTGGA	0.398													25	74					0	0	1	0	0
OR10K1	391109	broad.mit.edu	37	1	158435398	158435398	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158435398G>A	uc010pij.1	+	1	47	c.47G>A	c.(46-48)GGC>GAC	p.G16D		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GTCGTCCTCGGCTTCTCATCC	0.507													12	58					0	0	1	0	0
OR10K1	391109	broad.mit.edu	37	1	158435691	158435691	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158435691C>T	uc010pij.1	+	1	340	c.340C>T	c.(340-342)CTG>TTG	p.L114L		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCACTCCTTCCTGCTGGCAGC	0.527													38	176					0	0	1	0	0
OR10K1	391109	broad.mit.edu	37	1	158435835	158435835	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158435835C>T	uc010pij.1	+	1	484	c.484C>T	c.(484-486)CTA>TTA	p.L162L		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CACCACCTCCCTAGTATTTCA	0.557													75	199					0	0	1	0	0
OR10R2	343406	broad.mit.edu	37	1	158450081	158450081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158450081G>A	uc010pik.1	+	1	414	c.414G>A	c.(412-414)ATG>ATA	p.M138I	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	138	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					TGGGTGTGATGGGTTATGATC	0.483													92	272					0	0	1	0	0
OR10R2	343406	broad.mit.edu	37	1	158450355	158450355	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158450355C>T	uc010pik.1	+	1	688	c.688C>T	c.(688-690)CCC>TCC	p.P230S	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	230	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					ACTTGTGGTTCCCTTTCTGTT	0.438													35	140					0	0	1	0	0
OR10R2	343406	broad.mit.edu	37	1	158450377	158450377	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158450377C>T	uc010pik.1	+	1	710	c.710C>T	c.(709-711)TCT>TTT	p.S237F	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	237	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					ATCTGTGTTTCTTATCTCTGC	0.433													29	112					0	0	1	0	0
OR10R2	343406	broad.mit.edu	37	1	158450542	158450542	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158450542G>A	uc010pik.1	+	1	875	c.875G>A	c.(874-876)AGG>AAG	p.R292K	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					AACAAAGACAGGCTGGTGACG	0.458													19	61					0	0	1	0	0
OR10X1	128367	broad.mit.edu	37	1	158548779	158548779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158548779C>T	uc010pin.1	-	1	911	c.911G>A	c.(910-912)AGC>AAC	p.S304N		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	304	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					ATTCCTCAGGCTGAATATGAT	0.413													60	126					0	0	1	0	0
OR10X1	128367	broad.mit.edu	37	1	158549183	158549183	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158549183G>A	uc010pin.1	-	1	507	c.507C>T	c.(505-507)TTC>TTT	p.F169F		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	169	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GAGAGATAAAGAAGCCTGCAG	0.468													17	35					0	0	1	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576322	158576322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158576322C>T	uc010pio.1	+	1	94	c.94C>T	c.(94-96)CTC>TTC	p.L32F		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					TGCCTTGTTCCTCTCTCTGTA	0.502													55	135					0	0	1	0	0
OR10Z1	128368	broad.mit.edu	37	1	158577134	158577134	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158577134G>A	uc010pio.1	+	1	906	c.906G>A	c.(904-906)AGG>AGA	p.R302R		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					CAGCTCTGAGGAATGCTTTCA	0.458													72	191					0	0	1	0	0
OR10Z1	128368	broad.mit.edu	37	1	158577148	158577148	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158577148G>A	uc010pio.1	+	1	920	c.920G>A	c.(919-921)GGG>GAG	p.G307E		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					GCTTTCAGAGGGAGATTGCTG	0.468													60	157					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158581078	158581078	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158581078G>A	uc001fst.1	-	52	7435	c.7236C>T	c.(7234-7236)TTC>TTT	p.F2412F		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2412				GRSHLSGYDYVGFTNSYFGN -> VEAISLAMTTLASPIPT LATNKQLLVDRRKS (in Ref. 1; AAA60577/ AAA60994).	actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGGAATTGGTGAAGCCAACGT	0.483													15	45					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158583514	158583514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158583514C>T	uc001fst.1	-	50	7185	c.6986G>A	c.(6985-6987)GGG>GAG	p.G2329E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2329	EF-hand 2.|2 (Potential).				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCCTACCTCCCTGGATCCAC	0.493													35	50					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158585167	158585167	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158585167C>T	uc001fst.1	-	48	6826	c.6627G>A	c.(6625-6627)ATG>ATA	p.M2209I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2209	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTTGACGCTTCATCGCCTGGA	0.483													52	120					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158587369	158587369	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158587369G>A	uc001fst.1	-	47	6757	c.6558C>T	c.(6556-6558)CTC>CTT	p.L2186L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2186	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTGTTTCTTTGAGCAATGATC	0.343													18	39					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158589027	158589027	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158589027C>T	uc001fst.1	-	45	6714	c.6515G>A	c.(6514-6516)TGG>TAG	p.W2172*		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2172	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCCAGGATCCATTGAAGGAA	0.483													63	133					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158589991	158589991	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158589991C>T	uc001fst.1	-	44	6585	c.6386G>A	c.(6385-6387)AGG>AAG	p.R2129K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2129	Spectrin 20.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTTCCAGGTCCTTTCCAGCAC	0.403													20	103					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158590148	158590148	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158590148C>T	uc001fst.1	-	44	6428	c.6229G>A	c.(6229-6231)GAA>AAA	p.E2077K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2077	Spectrin 20.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGCCGAATTTCATTCAGGGAG	0.473													21	42					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158596730	158596730	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158596730G>A	uc001fst.1	-	41	5931	c.5732C>T	c.(5731-5733)CCT>CTT	p.P1911L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1911	Spectrin 18.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGCCAGAGAAGGGGTCTTTTC	0.428													63	149					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158596785	158596785	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158596785C>T	uc001fst.1	-	41	5876	c.5677G>A	c.(5677-5679)GAA>AAA	p.E1893K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1893	Spectrin 18.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCTGACTTTCCTCCTGCAAC	0.423													44	141					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158607824	158607824	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158607824C>T	uc001fst.1	-	36	5387	c.5188G>A	c.(5188-5190)GAG>AAG	p.E1730K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1730	Spectrin 17.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGCACATACTCTATCCAGGAT	0.403													35	111					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158607836	158607836	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158607836C>T	uc001fst.1	-	36	5375	c.5176G>A	c.(5176-5178)GAA>AAA	p.E1726K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1726	Spectrin 17.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ATCCAGGATTCCTCATCATCT	0.418													10	150					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158607975	158607975	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158607975G>A	uc001fst.1	-	36	5236	c.5037C>T	c.(5035-5037)TTC>TTT	p.F1679F		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1679	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GATCAACGTTGAAAGTCCCGC	0.423													22	35					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158608031	158608031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158608031C>T	uc001fst.1	-	36	5180	c.4981G>A	c.(4981-4983)GAT>AAT	p.D1661N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1661	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTGAGTGCATCCTAGAAAGTC	0.433													8	22					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158609381	158609381	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158609381C>T	uc001fst.1	-	35	5170	c.4971G>A	c.(4969-4971)TTG>TTA	p.L1657L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1657	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCTCTCGAGCCAACATCTCTC	0.483													20	120					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158609717	158609717	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158609717G>A	uc001fst.1	-	34	5017	c.4818C>T	c.(4816-4818)GCC>GCT	p.A1606A		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1606					actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTTGACGACTGGCCTCATTGA	0.473													42	116					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158614085	158614085	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158614085C>T	uc001fst.1	-	30	4495	c.4296G>A	c.(4294-4296)TTG>TTA	p.L1432L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1432	Spectrin 14.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTTTCTTCATCAAAGCCTCCA	0.398													31	64					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158618317	158618317	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158618317G>A	uc001fst.1	-	26	3895	c.3696C>T	c.(3694-3696)CTC>CTT	p.L1232L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1232	Spectrin 12.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCAGGGGTACGAGGTCCCTTT	0.498													56	51					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158623135	158623135	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158623135G>A	uc001fst.1	-	22	3316	c.3117C>T	c.(3115-3117)TTC>TTT	p.F1039F		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1039					actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGAGCATCGGGAACTCATCGT	0.562													40	85					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158627485	158627485	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158627485C>T	uc001fst.1	-	19	2787	c.2588_splice	c.e19-1	p.G863_splice		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1						actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCAAAGTGTCCTATGGAGTAA	0.413													31	88					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158637664	158637664	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158637664C>T	uc001fst.1	-	15	2221	c.2022G>A	c.(2020-2022)GAG>GAA	p.E674E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	674	Spectrin 7.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTTTTGTAGCCTCCAGCAACT	0.423													20	51					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158641160	158641160	+	Silent	SNP	G	A	A	rs41273525		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158641160G>A	uc001fst.1	-	12	1771	c.1572C>T	c.(1570-1572)GCC>GCT	p.A524A		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	524	Spectrin 6.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGGCAGTAAAGGCTTCCTCAA	0.468													9	43					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158644199	158644199	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158644199C>T	uc001fst.1	-	10	1469	c.1270G>A	c.(1270-1272)GAC>AAC	p.D424N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	424	Spectrin 5.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGAAATCGGTCATCGTAAGAG	0.448													72	170					0	0	1	0	0
OR6K2	81448	broad.mit.edu	37	1	158669801	158669801	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158669801G>A	uc001fsu.1	-	1	642	c.642C>T	c.(640-642)CTC>CTT	p.L214L		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ACATGAAGATGAGCATCACAG	0.493													46	80					0	0	1	0	0
OR6K2	81448	broad.mit.edu	37	1	158669833	158669833	+	Missense_Mutation	SNP	G	A	A	rs150220329		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158669833G>A	uc001fsu.1	-	1	610	c.610C>T	c.(610-612)CAT>TAT	p.H204Y		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TCCACTGCATGAATGACATCC	0.488													34	95					0	0	1	0	0
OR6K6	128371	broad.mit.edu	37	1	158724951	158724951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158724951G>A	uc001fsw.1	+	1	346	c.346G>A	c.(346-348)GAG>AAG	p.E116K		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	116	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					CCTAATCAGTGAGCAGAAGAG	0.498													51	121					0	0	1	0	0
OR6K6	128371	broad.mit.edu	37	1	158725176	158725176	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158725176A>T	uc001fsw.1	+	1	571	c.571A>T	c.(571-573)ATT>TTT	p.I191F		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					GATTGCATGGATTTCCACCTT	0.483													35	70					0	0	1	0	0
OR6N1	128372	broad.mit.edu	37	1	158735998	158735998	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158735998C>T	uc010piq.1	-	1	475	c.475G>A	c.(475-477)GAA>AAA	p.E159K		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AAGGAAATTTCAACTACTGGC	0.537													23	54					0	0	1	0	0
OR6N2	81442	broad.mit.edu	37	1	158746540	158746540	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158746540C>T	uc010pir.1	-	1	886	c.886G>A	c.(886-888)GAA>AAA	p.E296K		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					TTAATGATTTCCTTGTTACGA	0.408													42	174					0	0	1	0	0
OR6N2	81442	broad.mit.edu	37	1	158746637	158746637	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158746637C>T	uc010pir.1	-	1	789	c.789G>A	c.(787-789)AAG>AAA	p.K263K		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					AATAGCTCTTCTTTAGCCGCA	0.443													37	77					0	0	1	0	0
MNDA	4332	broad.mit.edu	37	1	158815650	158815650	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158815650G>A	uc001fsz.1	+	5	1044	c.844G>A	c.(844-846)GAA>AAA	p.E282K		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	282	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					GGAAATAAAGGAAGCATCATC	0.338													24	72					0	0	1	0	0
MNDA	4332	broad.mit.edu	37	1	158815653	158815653	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158815653G>A	uc001fsz.1	+	5	1047	c.847G>A	c.(847-849)GCA>ACA	p.A283T		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	283	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					AATAAAGGAAGCATCATCTGT	0.343													30	65					0	0	1	0	0
MNDA	4332	broad.mit.edu	37	1	158815707	158815707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158815707G>A	uc001fsz.1	+	5	1101	c.901G>A	c.(901-903)GAA>AAA	p.E301K		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	301	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					CAGAATTATCGAAATAGCAAA	0.338													39	92					0	0	1	0	0
PYHIN1	149628	broad.mit.edu	37	1	158908993	158908993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158908993C>T	uc001ftb.2	+	4	780	c.535C>T	c.(535-537)CCC>TCC	p.P179S	PYHIN1_uc001fta.3_Missense_Mutation_p.P179S|PYHIN1_uc001ftc.2_Missense_Mutation_p.P170S|PYHIN1_uc001ftd.2_Missense_Mutation_p.P179S|PYHIN1_uc001fte.2_Missense_Mutation_p.P170S	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	179					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					TTCCCCACCTCCCCAGACCTC	0.522													50	138					0	0	1	0	0
PYHIN1	149628	broad.mit.edu	37	1	158911994	158911994	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158911994C>T	uc001ftb.2	+	5	1052	c.807C>T	c.(805-807)ATC>ATT	p.I269I	PYHIN1_uc001ftc.2_Silent_p.I260I|PYHIN1_uc001ftd.2_Silent_p.I269I|PYHIN1_uc001fte.2_Silent_p.I260I	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	269	HIN-200.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					AGAGAATCATCATTATATCAA	0.378													15	52					0	0	1	0	0
PYHIN1	149628	broad.mit.edu	37	1	158914789	158914789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:158914789C>T	uc001ftb.2	+	7	1561	c.1316C>T	c.(1315-1317)CCT>CTT	p.P439L	PYHIN1_uc001ftc.2_Missense_Mutation_p.P430L|PYHIN1_uc001ftd.2_Missense_Mutation_p.P439L|PYHIN1_uc001fte.2_Missense_Mutation_p.P430L	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	439					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					CTCAAGACTCCTCAGATGCCA	0.493													39	133					0	0	1	0	0
CADM3	57863	broad.mit.edu	37	1	159163754	159163754	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159163754G>A	uc001ftl.2	+	5	757	c.615G>A	c.(613-615)GCG>GCA	p.A205A	CADM3_uc009wsy.1_Intron|CADM3_uc001ftk.2_Silent_p.A239A	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	205	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					ATGATGGGGCGAGCATCGTGT	0.502													29	59					0	0	1	0	0
CADM3	57863	broad.mit.edu	37	1	159166837	159166837	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159166837C>T	uc001ftl.2	+	7	1081	c.939C>T	c.(937-939)ACC>ACT	p.T313T	CADM3_uc009wsy.1_Silent_p.T267T|CADM3_uc001ftk.2_Silent_p.T347T|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	313	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					CCTACTACACCCTCAATGTTA	0.488													27	73					0	0	1	0	0
CADM3	57863	broad.mit.edu	37	1	159170684	159170684	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159170684G>A	uc001ftl.2	+	9	1311	c.1169G>A	c.(1168-1170)GGG>GAG	p.G390E	CADM3_uc001ftk.2_Missense_Mutation_p.G424E|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	390	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					CAGTCAGGAGGGGACGACAAG	0.612													17	91					0	0	1	0	0
CADM3	57863	broad.mit.edu	37	1	159170712	159170712	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159170712G>A	uc001ftl.2	+	9	1339	c.1197G>A	c.(1195-1197)TAG>TAA	p.*399*	CADM3_uc001ftk.2_Silent_p.*433*|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	399					adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					ATTTCATCTAGAGGCGCCTGC	0.642													7	63					0	0	1	0	0
DARC	2532	broad.mit.edu	37	1	159174755	159174755	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159174755G>A	uc001fto.2	+	1	246	c.6G>A	c.(4-6)GGG>GGA	p.G2G	uc001ftm.1_5'Flank|DARC_uc001ftp.3_5'Flank	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	2	Extracellular (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					GTGCCATGGGGAACTGTCTGC	0.562													25	70					0	0	1	0	0
DARC	2532	broad.mit.edu	37	1	159175467	159175467	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159175467C>T	uc001fto.2	+	2	478	c.238C>T	c.(238-240)CTC>TTC	p.L80F	DARC_uc001ftp.3_Missense_Mutation_p.L82F	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	80	Helical; Name=1; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					CAGCACTGTCCTCTTCATGCT	0.592													15	173					0	0	1	0	0
DARC	2532	broad.mit.edu	37	1	159175742	159175742	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159175742G>A	uc001fto.2	+	2	753	c.513G>A	c.(511-513)GTG>GTA	p.V171V	DARC_uc001ftp.3_Silent_p.V173V	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	171	Helical; Name=4; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					GGCTCACTGTGGGAATTTGGG	0.632													5	24					0	0	1	0	0
FCER1A	2205	broad.mit.edu	37	1	159273855	159273855	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159273855G>A	uc001ftq.2	+	4	313	c.214G>A	c.(214-216)GAA>AAA	p.E72K		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	72	Extracellular (Potential).|Ig-like 1.					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	CAGCCTTTCAGAAGAGACAAA	0.363													39	94					0	0	1	0	0
OR10J3	441911	broad.mit.edu	37	1	159283541	159283541	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159283541C>T	uc010piu.1	-	1	909	c.909G>A	c.(907-909)CAG>CAA	p.Q303Q		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					CCCCACGGCTCTGTGCAGAGC	0.433													39	82					0	0	1	0	0
OR10J3	441911	broad.mit.edu	37	1	159284211	159284211	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159284211G>A	uc010piu.1	-	1	239	c.239C>T	c.(238-240)CCC>CTC	p.P80L		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	80	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					AAGCATATGGGGAATGATGGC	0.493													34	79					0	0	1	0	0
OR10J3	441911	broad.mit.edu	37	1	159284432	159284432	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159284432G>A	uc010piu.1	-	1	18	c.18C>T	c.(16-18)TCC>TCT	p.S6S		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					TCACAAAAGTGGAATTTAGCT	0.438													65	162					0	0	1	0	0
OR10J3	441911	broad.mit.edu	37	1	159284448	159284448	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159284448A>C	uc010piu.1	-	1	2	c.2T>G	c.(1-3)ATG>AGG	p.M1R		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					TAGCTTTGGCATCAAGGTAGG	0.423													40	173					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159410142	159410142	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159410142C>T	uc010piv.1	+	1	594	c.594C>T	c.(592-594)TCC>TCT	p.S198S	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	198	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TGAAGCTCTCCTGCATTGACA	0.438													68	146					0	0	1	0	0
OR10J5	127385	broad.mit.edu	37	1	159504872	159504872	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159504872G>A	uc010piw.1	-	1	926	c.926C>T	c.(925-927)TCT>TTT	p.S309F		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					AATCCATTAAGAAATATTTCT	0.388													16	36					0	0	1	0	0
OR10J5	127385	broad.mit.edu	37	1	159505354	159505354	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159505354G>A	uc010piw.1	-	1	444	c.444C>T	c.(442-444)TCC>TCT	p.S148S		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					CAATGCCAAAGGACCCACACA	0.502													26	72					0	0	1	0	0
OR10J5	127385	broad.mit.edu	37	1	159505396	159505396	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159505396G>A	uc010piw.1	-	1	402	c.402C>T	c.(400-402)GTC>GTT	p.V134V		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					TGCTCATGATGACAGTGTATC	0.483													38	83					0	0	1	0	0
APCS	325	broad.mit.edu	37	1	159558247	159558247	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159558247G>A	uc001ftv.2	+	2	517	c.421G>A	c.(421-423)GGT>AGT	p.G141S		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	141	Pentaxin.		G -> S (in a breast cancer sample; somatic mutation).		acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding	p.G141S(1)		ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					TCTGCGACAGGGTTACTTTGT	0.517													10	50					0	0	1	0	0
CRP	1401	broad.mit.edu	37	1	159683513	159683514	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159683513_159683514GG>AA	uc001ftw.2	-	2	580_581	c.476_477CC>TT	c.(475-477)TCC>TTT	p.S159F	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	159	Pentaxin.				acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	TCCCACCGAAGGAATCCTGCTC	0.52													126	335					0	0	1	0	0
CRP	1401	broad.mit.edu	37	1	159683752	159683752	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159683752C>T	uc001ftw.2	-	2	342	c.238G>A	c.(238-240)GAG>AAG	p.E80K	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	80	Pentaxin.			YSIFSYATKRQDNEIL -> TVFSRMPPRDKTMRFF (in Ref. 4; CAA39671).|Missing (in Ref. 13; AA sequence).	acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	ATGAGAATCTCATTGTCTTGT	0.453													7	102					0	0	1	0	0
CRP	1401	broad.mit.edu	37	1	159683765	159683765	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159683765C>T	uc001ftw.2	-	2	329	c.225G>A	c.(223-225)AAG>AAA	p.K75K	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_5'Flank	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	75	Pentaxin.			YSIFSYATKRQDNEIL -> TVFSRMPPRDKTMRFF (in Ref. 4; CAA39671).	acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	TGTCTTGTCTCTTGGTGGCAT	0.453													24	84					0	0	1	0	0
CRP	1401	broad.mit.edu	37	1	159683778	159683778	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159683778G>A	uc001ftw.2	-	2	316	c.212C>T	c.(211-213)TCG>TTG	p.S71L	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_5'Flank	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	71	Pentaxin.			YSIFSYATKRQDNEIL -> TVFSRMPPRDKTMRFF (in Ref. 4; CAA39671).	acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	GGTGGCATACGAGAAAATACT	0.448													27	72					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159778902	159778902	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159778902G>A	uc001fud.3	+	4	513	c.471G>A	c.(469-471)CAG>CAA	p.Q157Q	FCRL6_uc010pix.1_3'UTR|FCRL6_uc001fuc.2_Silent_p.Q164Q|FCRL6_uc009wsz.1_Intron|FCRL6_uc009wta.2_Silent_p.Q157Q	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	157	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					ACACCTTGCAGGACAGGGGCC	0.617													15	65					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159778947	159778947	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159778947G>A	uc001fud.3	+	4	558	c.516G>A	c.(514-516)GAG>GAA	p.E172E	FCRL6_uc010pix.1_3'UTR|FCRL6_uc001fuc.2_Silent_p.E179E|FCRL6_uc009wsz.1_Intron|FCRL6_uc009wta.2_Silent_p.E172E	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	172	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GAGCCAAGGAGGGAGACTCTG	0.627													15	57					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159783292	159783292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159783292C>T	uc001fud.3	+	7	1065	c.1023C>T	c.(1021-1023)TCC>TCT	p.S341S	FCRL6_uc001fuc.2_Silent_p.S348S|FCRL6_uc009wsz.1_Silent_p.S246S|FCRL6_uc009wta.2_Silent_p.S341S	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	341	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					CCCTTCCATCCCAGATACCAC	0.557													22	86					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159784074	159784074	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159784074G>A	uc001fud.3	+	8	1181	c.1139G>A	c.(1138-1140)AGG>AAG	p.R380K	FCRL6_uc001fuc.2_Missense_Mutation_p.R387K|FCRL6_uc009wsz.1_Missense_Mutation_p.R285K|FCRL6_uc009wta.2_Missense_Mutation_p.R380K	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	380	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					ACCTCAAAGAGGAGTGAAGGT	0.438													23	45					0	0	1	0	0
SLAMF8	56833	broad.mit.edu	37	1	159799809	159799809	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159799809G>A	uc001fue.3	+	2	404	c.194G>A	c.(193-195)CGA>CAA	p.R65Q		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	65	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					ACGTTTTTCCGAGGCTCCCTG	0.637													80	159					0	0	1	0	0
SLAMF8	56833	broad.mit.edu	37	1	159802914	159802914	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159802914C>T	uc001fue.3	+	3	826	c.616C>T	c.(616-618)CCT>TCT	p.P206S		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	206	Ig-like C2-type.|Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					TGTCTCCAACCCTGTCAGCTG	0.557													31	81					0	0	1	0	0
CCDC19	25790	broad.mit.edu	37	1	159860290	159860290	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159860290C>T	uc001fui.2	-	3	270	c.252G>A	c.(250-252)CGG>CGA	p.R84R	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_5'UTR|CCDC19_uc001ful.2_5'UTR|CCDC19_uc009wtc.1_Silent_p.R84R	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	84						mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			GGACCATGTCCCGGGTGATGA	0.522													18	129					0	0	1	0	0
TAGLN2	8407	broad.mit.edu	37	1	159890198	159890198	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159890198G>A	uc001fum.1	-	1	152	c.102C>T	c.(100-102)ATC>ATT	p.I34I	CCDC19_uc001ful.2_Intron|TAGLN2_uc001fun.1_Silent_p.I34I|TAGLN2_uc001fuo.1_Silent_p.I34I|TAGLN2_uc010piy.1_Silent_p.I34I	NM_003564	NP_003555	P37802	TAGL2_HUMAN	transgelin 2	34	CH.				muscle organ development	nuclear membrane|plasma membrane	protein binding				0	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ACTGGGTGGTGATCCACTGGA	0.602													26	78					0	0	1	0	0
IGSF9	57549	broad.mit.edu	37	1	159912807	159912807	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159912807G>A	uc001fur.2	-	3	391	c.193C>T	c.(193-195)CCC>TCC	p.P65S	IGSF9_uc001fuq.2_Missense_Mutation_p.P65S	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	65	Ig-like 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			ATGAAGATGGGAAGCAGGAAT	0.498													13	51					0	0	1	0	0
SLAMF9	89886	broad.mit.edu	37	1	159921563	159921563	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159921563C>T	uc001fus.2	-	4	875	c.758G>A	c.(757-759)GGA>GAA	p.G253E	SLAMF9_uc009wtd.2_Missense_Mutation_p.G162E|SLAMF9_uc001fut.2_3'UTR	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	253	Helical; (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GACCCAGAGTCCCATGGCCAG	0.488													48	102					0	0	1	0	0
SLAMF9	89886	broad.mit.edu	37	1	159922231	159922231	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:159922231C>T	uc001fus.2	-	3	602	c.485G>A	c.(484-486)GGC>GAC	p.G162D	SLAMF9_uc009wtd.2_Intron|SLAMF9_uc001fut.2_Intron	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	162	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CATATCCATGCCTGCCTTCTC	0.577													65	98					0	0	1	0	0
IGSF8	93185	broad.mit.edu	37	1	160062981	160062981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160062981G>A	uc001fva.2	-	4	1090	c.1045C>T	c.(1045-1047)CCT>TCT	p.P349S	IGSF8_uc001fuz.2_Missense_Mutation_p.P349S|IGSF8_uc009wtf.2_Missense_Mutation_p.P349S	NM_052868	NP_443100	Q969P0	IGSF8_HUMAN	immunoglobulin superfamily, member 8	349	Ig-like C2-type 3.|Extracellular (Potential).				cell proliferation|cellular component movement|nervous system development|single fertilization|skeletal muscle tissue development	integral to membrane	protein binding				0	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GCCCCCGCAGGTGCCATCTCC	0.662													10	28					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160093842	160093842	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160093842C>T	uc001fvc.2	+	5	623	c.491C>T	c.(490-492)CCT>CTT	p.P164L	ATP1A2_uc001fvb.2_Missense_Mutation_p.P164L|ATP1A2_uc010piz.1_Missense_Mutation_p.P9L	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	164	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			AACATGGTACCTCAGGTAAGA	0.532													17	57					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160094107	160094107	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160094107G>A	uc001fvc.2	+	6	649	c.517G>A	c.(517-519)GGA>AGA	p.G173R	ATP1A2_uc001fvb.2_Missense_Mutation_p.G173R|ATP1A2_uc010piz.1_Missense_Mutation_p.G18R	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	173	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GATCCGGGAGGGAGAGAAGAT	0.597													7	14					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160094972	160094972	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160094972C>T	uc001fvc.2	+	7	809	c.677C>T	c.(676-678)TCC>TTC	p.S226F	ATP1A2_uc001fvb.2_Missense_Mutation_p.S226F|ATP1A2_uc010piz.1_Missense_Mutation_p.S71F|ATP1A2_uc001fvd.2_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	226	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CAGACCCGCTCCCCCGAGTTC	0.552													27	53					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160100247	160100247	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160100247C>T	uc001fvc.2	+	13	1819	c.1687C>T	c.(1687-1689)CCT>TCT	p.P563S	ATP1A2_uc001fvb.2_Missense_Mutation_p.P563S|ATP1A2_uc001fvd.2_Missense_Mutation_p.P299S|ATP1A2_uc009wtg.1_Missense_Mutation_p.P251S	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	563	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TGGAAAGTTTCCTCGGGGCTT	0.552													9	82					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160100331	160100331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160100331C>T	uc001fvc.2	+	13	1903	c.1771C>T	c.(1771-1773)CCT>TCT	p.P591S	ATP1A2_uc001fvb.2_Missense_Mutation_p.P591S|ATP1A2_uc001fvd.2_Missense_Mutation_p.P327S|ATP1A2_uc009wtg.1_Missense_Mutation_p.P279S	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	591	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TATGATTGACCCTCCCCGGGC	0.577													26	75					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160106098	160106098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160106098G>A	uc001fvc.2	+	18	2633	c.2501G>A	c.(2500-2502)CGA>CAA	p.R834Q	ATP1A2_uc001fvb.2_Missense_Mutation_p.R834Q|ATP1A2_uc001fvd.2_Missense_Mutation_p.R570Q	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	834	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CGGCAGCCACGAAACTCCCAG	0.597													37	70					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160109728	160109728	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160109728C>T	uc001fvc.2	+	22	3120	c.2988C>T	c.(2986-2988)TTC>TTT	p.F996F	ATP1A2_uc001fvd.2_Silent_p.F715F	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	996	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TCCTCATCTTCATCTATGATG	0.577													33	124					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160109743	160109744	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160109743_160109744CC>TT	uc001fvc.2	+	22	3135_3136	c.3003_3004CC>TT	c.(3001-3006)GTCCGA>GTTTGA	p.R1002*	ATP1A2_uc001fvd.2_Nonsense_Mutation_p.R721*	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	1002	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			ATGATGAGGTCCGAAAGCTCAT	0.579													29	124					0	0	1	0	0
ATP1A4	480	broad.mit.edu	37	1	160141071	160141071	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160141071C>T	uc001fve.3	+	11	2001	c.1522C>T	c.(1522-1524)CAG>TAG	p.Q508*	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Nonsense_Mutation_p.Q11*	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	508	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGACAGCTCCCAGACCCACGT	0.517													42	117					0	0	1	0	0
ATP1A4	480	broad.mit.edu	37	1	160141149	160141149	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160141149G>A	uc001fve.3	+	11	2079	c.1600G>A	c.(1600-1602)GAG>AAG	p.E534K	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Missense_Mutation_p.E37K	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	534	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GAATGGGCAGGAGTACTCAAT	0.512													25	61					0	0	1	0	0
ATP1A4	480	broad.mit.edu	37	1	160147345	160147345	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160147345T>G	uc001fve.3	+	18	3106	c.2627T>G	c.(2626-2628)TTT>TGT	p.F876C	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Missense_Mutation_p.F379C|ATP1A4_uc001fvh.2_Missense_Mutation_p.F12C	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	876	Extracellular (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TTTACCTACTTTGTAATCCTG	0.522													29	87					0	0	1	0	0
SLAMF6	114836	broad.mit.edu	37	1	160458917	160458917	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160458917C>T	uc001fwe.1	-	6	900	c.840G>A	c.(838-840)ACG>ACA	p.T280T	SLAMF6_uc001fwd.1_Silent_p.T279T|SLAMF6_uc010pjh.1_Silent_p.T230T|SLAMF6_uc010pji.1_Silent_p.T169T|SLAMF6_uc010pjj.1_3'UTR	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	280	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			CAGTGTTGTTCGTTGGAGACA	0.443													43	101					0	0	1	0	0
SLAMF6	114836	broad.mit.edu	37	1	160459991	160459991	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160459991G>A	uc001fwe.1	-	5	853	c.793C>T	c.(793-795)CCC>TCC	p.P265S	SLAMF6_uc001fwd.1_Missense_Mutation_p.P265S|SLAMF6_uc010pjh.1_Missense_Mutation_p.P216S|SLAMF6_uc010pji.1_Missense_Mutation_p.P154S|SLAMF6_uc010pjj.1_Missense_Mutation_p.P154S	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	265	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			TGCTCACCGGGGCCCTGTGTT	0.478													35	120					0	0	1	0	0
SLAMF6	114836	broad.mit.edu	37	1	160465879	160465879	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160465879C>T	uc001fwe.1	-	2	414	c.354G>A	c.(352-354)AAG>AAA	p.K118K	SLAMF6_uc001fwd.1_Silent_p.K118K|SLAMF6_uc010pjh.1_Silent_p.K69K|SLAMF6_uc010pji.1_Intron|SLAMF6_uc010pjj.1_Intron|SLAMF6_uc009wtm.1_Silent_p.K69K	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	118	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			AACTGGACAGCTTTGCAGAGG	0.423													56	129					0	0	1	0	0
CD84	8832	broad.mit.edu	37	1	160520779	160520779	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160520779C>T	uc001fwh.3	-	6	882	c.858G>A	c.(856-858)AGG>AGA	p.R286R	CD84_uc001fwf.3_Silent_p.R269R|CD84_uc001fwg.3_Silent_p.R280R|CD84_uc009wtn.2_Intron|CD84_uc001fwi.3_Silent_p.R155R	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	286	Cytoplasmic (Potential).				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GCTGGGTGTTCCTTGAAGCCA	0.433													50	231					0	0	1	0	0
SLAMF1	6504	broad.mit.edu	37	1	160607071	160607071	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160607071C>T	uc001fwl.3	-	2	671	c.325G>A	c.(325-327)GAA>AAA	p.E109K	SLAMF1_uc010pjk.1_RNA|SLAMF1_uc010pjl.1_RNA|SLAMF1_uc010pjm.1_RNA|SLAMF1_uc001fwm.2_Missense_Mutation_p.E109K	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	109	Extracellular (Potential).				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			TTCCTGCTTTCCCGTATCCCC	0.468													36	97					0	0	1	0	0
CD48	962	broad.mit.edu	37	1	160648910	160648910	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160648910C>T	uc001fwn.2	-	4	696	c.664G>A	c.(664-666)GGA>AGA	p.G222R		NM_001778	NP_001769	P09326	CD48_HUMAN	CD48 molecule precursor	222					blood coagulation|defense response|leukocyte migration	integral to plasma membrane|membrane raft	protein binding				0	all_cancers(52;2.18e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CATTCTACTCCAAAGGACCGG	0.453													17	48					0	0	1	0	0
SLAMF7	57823	broad.mit.edu	37	1	160719701	160719701	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160719701G>A	uc001fwq.2	+	3	482	c.467G>A	c.(466-468)GGG>GAG	p.G156E	SLAMF7_uc010pjn.1_Missense_Mutation_p.G49E|SLAMF7_uc001fws.2_Missense_Mutation_p.G49E|SLAMF7_uc001fwr.2_Missense_Mutation_p.G156E|SLAMF7_uc010pjo.1_Intron|SLAMF7_uc010pjp.1_Missense_Mutation_p.G49E|SLAMF7_uc010pjq.1_Intron|SLAMF7_uc010pjr.1_Missense_Mutation_p.G49E	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	156	Ig-like C2-type.|Extracellular (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			ATGGAACATGGGGAAGAGGAT	0.522													41	108					0	0	1	0	0
SLAMF7	57823	broad.mit.edu	37	1	160719870	160719870	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160719870G>A	uc001fwq.2	+	3	651	c.636G>A	c.(634-636)AGG>AGA	p.R212R	SLAMF7_uc010pjn.1_Silent_p.R105R|SLAMF7_uc001fws.2_Silent_p.R105R|SLAMF7_uc001fwr.2_Silent_p.R212R|SLAMF7_uc010pjo.1_Intron|SLAMF7_uc010pjp.1_Silent_p.R105R|SLAMF7_uc010pjq.1_Intron|SLAMF7_uc010pjr.1_Silent_p.R105R	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	212	Extracellular (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			TCCTTGCCAGGAAGCTCTGTG	0.557													30	82					0	0	1	0	0
LY9	4063	broad.mit.edu	37	1	160766091	160766091	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160766091C>T	uc001fwu.2	+	1	164	c.114C>T	c.(112-114)TTC>TTT	p.F38F	LY9_uc001fwt.2_Silent_p.F38F|LY9_uc010pjs.1_Silent_p.F38F|LY9_uc001fwv.2_Silent_p.F38F|LY9_uc001fww.2_Silent_p.F38F|LY9_uc001fwx.2_Silent_p.F38F	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	38					cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CTCTCCTCTTCCTGCTCATGG	0.483													37	183					0	0	1	0	0
LY9	4063	broad.mit.edu	37	1	160783618	160783618	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160783618C>T	uc001fwu.2	+	3	697	c.647C>T	c.(646-648)CCA>CTA	p.P216L	LY9_uc010pjs.1_Missense_Mutation_p.P216L|LY9_uc001fwv.2_Missense_Mutation_p.P216L|LY9_uc001fww.2_Missense_Mutation_p.P216L|LY9_uc001fwx.2_Missense_Mutation_p.P216L|LY9_uc001fwy.1_Missense_Mutation_p.P118L|LY9_uc001fwz.2_5'Flank	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	216	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CCATGTGACCCAGACCTGCCA	0.552													65	230					0	0	1	0	0
LY9	4063	broad.mit.edu	37	1	160784397	160784397	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160784397G>A	uc001fwu.2	+	4	968	c.918G>A	c.(916-918)AGG>AGA	p.R306R	LY9_uc010pjs.1_Silent_p.R306R|LY9_uc001fwv.2_Silent_p.R306R|LY9_uc001fww.2_Silent_p.R306R|LY9_uc001fwx.2_Silent_p.R306R|LY9_uc001fwy.1_Silent_p.R208R|LY9_uc001fwz.2_5'UTR	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	306	Extracellular (Potential).|Ig-like V-type 2.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TTAAATCCAGGGATCCTTACA	0.532													6	54					0	0	1	0	0
LY9	4063	broad.mit.edu	37	1	160786439	160786439	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160786439C>T	uc001fwu.2	+	5	1178	c.1128C>T	c.(1126-1128)ATC>ATT	p.I376I	LY9_uc001fwv.2_Silent_p.I376I|LY9_uc001fww.2_Intron|LY9_uc001fwx.2_Intron|LY9_uc001fwy.1_Intron|LY9_uc001fwz.2_Silent_p.I28I	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	376	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AGGATGGCATCTGCAGGATCA	0.592													8	21					0	0	1	0	0
LY9	4063	broad.mit.edu	37	1	160788098	160788098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160788098G>A	uc001fwu.2	+	6	1483	c.1433G>A	c.(1432-1434)CGA>CAA	p.R478Q	LY9_uc001fwv.2_Missense_Mutation_p.R478Q|LY9_uc001fww.2_Missense_Mutation_p.R388Q|LY9_uc001fwx.2_Missense_Mutation_p.R388Q|LY9_uc001fwy.1_Missense_Mutation_p.R290Q|LY9_uc001fwz.2_Missense_Mutation_p.R130Q	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	478	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			ATTTGGAAGCGAAAAGGACGG	0.522													9	104					0	0	1	0	0
LY9	4063	broad.mit.edu	37	1	160789114	160789114	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160789114C>T	uc001fwu.2	+	7	1498	c.1448C>T	c.(1447-1449)TCA>TTA	p.S483L	LY9_uc001fwv.2_Missense_Mutation_p.S483L|LY9_uc001fww.2_Missense_Mutation_p.S393L|LY9_uc001fwx.2_Missense_Mutation_p.S393L|LY9_uc001fwy.1_Missense_Mutation_p.S295L|LY9_uc001fwz.2_Missense_Mutation_p.S135L	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	483	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TTCTCAGGTTCAGTCCCAGCC	0.493													41	89					0	0	1	0	0
LY9	4063	broad.mit.edu	37	1	160793318	160793318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160793318C>T	uc001fwu.2	+	8	1612	c.1562C>T	c.(1561-1563)CCC>CTC	p.P521L	LY9_uc001fwv.2_Missense_Mutation_p.P507L|LY9_uc001fww.2_Missense_Mutation_p.P431L|LY9_uc001fwx.2_Missense_Mutation_p.P431L|LY9_uc001fwy.1_Missense_Mutation_p.P319L|LY9_uc001fwz.2_Missense_Mutation_p.P159L	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	521	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CTGGACACTCCCCTCAGGCCT	0.557													19	37					0	0	1	0	0
CD244	51744	broad.mit.edu	37	1	160802361	160802361	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160802361C>T	uc009wtq.2	-	8	1158	c.980G>A	c.(979-981)GGA>GAA	p.G327E	CD244_uc001fxa.2_Missense_Mutation_p.G322E|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Missense_Mutation_p.G230E	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	327	Cytoplasmic (Potential).				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CTTCCTGGATCCAGACTAGAA	0.458													24	57					0	0	1	0	0
CD244	51744	broad.mit.edu	37	1	160808825	160808825	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160808825G>A	uc009wtq.2	-	4	863	c.685C>T	c.(685-687)CCG>TCG	p.P229S	CD244_uc001fxa.2_Missense_Mutation_p.P224S|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Missense_Mutation_p.P132S|CD244_uc010pjt.1_RNA	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	229	Extracellular (Potential).				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			ACCAAAAACGGCCAAAATCTG	0.522													19	51					0	0	1	0	0
CD244	51744	broad.mit.edu	37	1	160811241	160811241	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160811241C>T	uc009wtq.2	-	3	607	c.429G>A	c.(427-429)GGG>GGA	p.G143G	CD244_uc001fxa.2_Silent_p.G138G|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Intron|CD244_uc010pjt.1_Intron	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	143	Extracellular (Potential).|Ig-like 2.				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CCAGGATCTTCCCCTGCCCCT	0.507													34	82					0	0	1	0	0
ITLN1	55600	broad.mit.edu	37	1	160849133	160849133	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160849133C>T	uc001fxc.2	-	7	873	c.757G>A	c.(757-759)GGA>AGA	p.G253R		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	253	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			ACCCTCATTCCAGCACACAAG	0.443													35	85					0	0	1	0	0
ITLN1	55600	broad.mit.edu	37	1	160850442	160850442	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160850442G>A	uc001fxc.2	-	6	737	c.621C>T	c.(619-621)ATC>ATT	p.I207I		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	207	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AGACCACAGGGATCACCGGGC	0.443													72	164					0	0	1	0	0
ITLN1	55600	broad.mit.edu	37	1	160851014	160851014	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160851014G>A	uc001fxc.2	-	5	610	c.494C>T	c.(493-495)TCC>TTC	p.S165F		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	165	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CCTCAGCAGGGAGCTGTTTCT	0.567													48	90					0	0	1	0	0
ITLN1	55600	broad.mit.edu	37	1	160853249	160853249	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160853249C>T	uc001fxc.2	-	3	242	c.126G>A	c.(124-126)AAG>AAA	p.K42K		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	42	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CTTTGATTTCCTTGCAGCTTC	0.443													37	119					0	0	1	0	0
ITLN2	142683	broad.mit.edu	37	1	160915040	160915041	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160915040_160915041GG>AA	uc001fxd.2	-	8	925_926	c.867_868CC>TT	c.(865-870)CCCCGT>CCTTGT	p.R290C	ITLN2_uc009wts.2_Missense_Mutation_p.R289C|ITLN2_uc010pju.1_Missense_Mutation_p.R207C	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	290					signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CCACACTGACGGGGTTTGCCCT	0.53													22	39					0	0	1	0	0
ITLN2	142683	broad.mit.edu	37	1	160917778	160917778	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160917778C>T	uc001fxd.2	-	7	824	c.766G>A	c.(766-768)GAG>AAG	p.E256K	ITLN2_uc009wts.2_Missense_Mutation_p.E255K|ITLN2_uc010pju.1_Missense_Mutation_p.E173K	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	256	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GCTGCTCTCTCGTTATTAAAC	0.438													12	96					0	0	1	0	0
ITLN2	142683	broad.mit.edu	37	1	160917803	160917803	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160917803G>A	uc001fxd.2	-	7	799	c.741C>T	c.(739-741)TTC>TTT	p.F247F	ITLN2_uc009wts.2_Silent_p.F246F|ITLN2_uc010pju.1_Silent_p.F164F	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	247	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GGAACTGAACGAATCCTGCAA	0.468													23	76					0	0	1	0	0
ITLN2	142683	broad.mit.edu	37	1	160920888	160920888	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160920888C>T	uc001fxd.2	-	4	444	c.386G>A	c.(385-387)TGG>TAG	p.W129*	ITLN2_uc009wts.2_Nonsense_Mutation_p.W128*|ITLN2_uc010pju.1_Nonsense_Mutation_p.W46*	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	129	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GTAGTTGGCCCAGTTGCCATC	0.582													30	85					0	0	1	0	0
ITLN2	142683	broad.mit.edu	37	1	160921009	160921009	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160921009C>T	uc001fxd.2	-	4	323	c.265G>A	c.(265-267)GGC>AGC	p.G89S	ITLN2_uc009wts.2_Missense_Mutation_p.G88S|ITLN2_uc010pju.1_Missense_Mutation_p.G6S	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	89	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GTCCAGCCGCCACCCCCAGAA	0.577													23	61					0	0	1	0	0
F11R	50848	broad.mit.edu	37	1	160969689	160969689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160969689G>A	uc009wtt.2	-	6	941	c.671C>T	c.(670-672)TCA>TTA	p.S224L	F11R_uc010pjv.1_Missense_Mutation_p.S175L|F11R_uc001fxe.3_Missense_Mutation_p.S224L|F11R_uc009wtu.2_Missense_Mutation_p.S224L|F11R_uc010pjw.1_Missense_Mutation_p.S228L|F11R_uc001fxf.3_Missense_Mutation_p.S224L	NM_016946	NP_058642	Q9Y624	JAM1_HUMAN	F11 receptor precursor	224	Ig-like V-type 2.|Extracellular (Potential).				blood coagulation|inflammatory response|interspecies interaction between organisms|leukocyte migration|tight junction assembly	integral to membrane|tight junction				ovary(2)	2	all_cancers(52;6.73e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00207)			CACAGCATTTGAAGTCATGGG	0.517													21	73					0	0	1	0	0
F11R	50848	broad.mit.edu	37	1	160970835	160970835	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:160970835G>A	uc009wtt.2	-	3	486	c.216C>T	c.(214-216)CTC>CTT	p.L72L	F11R_uc010pjv.1_Silent_p.L72L|F11R_uc001fxe.3_Silent_p.L72L|F11R_uc009wtu.2_Silent_p.L72L|F11R_uc010pjw.1_Silent_p.L76L|F11R_uc001fxf.3_Silent_p.L72L	NM_016946	NP_058642	Q9Y624	JAM1_HUMAN	F11 receptor precursor	72	Extracellular (Potential).|Ig-like V-type 1.				blood coagulation|inflammatory response|interspecies interaction between organisms|leukocyte migration|tight junction assembly	integral to membrane|tight junction				ovary(2)	2	all_cancers(52;6.73e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00207)			TATAGCAAACGAGTCTGGTGG	0.493													22	41					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018525	161018525	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161018525C>T	uc001fxl.2	-	12	2632	c.2286G>A	c.(2284-2286)CAG>CAA	p.Q762Q	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Intron|ARHGAP30_uc001fxm.2_Silent_p.Q608Q|ARHGAP30_uc009wtx.2_Silent_p.Q435Q	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	762	Glu-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CAGCTTCTACCTGGGCTTCCT	0.488													38	304					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018533	161018533	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161018533C>T	uc001fxl.2	-	12	2624	c.2278G>A	c.(2278-2280)GAA>AAA	p.E760K	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Intron|ARHGAP30_uc001fxm.2_Missense_Mutation_p.E606K|ARHGAP30_uc009wtx.2_Missense_Mutation_p.E433K	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	760	Glu-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			ACCTGGGCTTCCTCTCTTTGT	0.483													95	243					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018992	161018992	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161018992C>T	uc001fxl.2	-	12	2165	c.1819G>A	c.(1819-1821)GAA>AAA	p.E607K	ARHGAP30_uc001fxk.2_Missense_Mutation_p.E607K|ARHGAP30_uc001fxm.2_Missense_Mutation_p.E453K|ARHGAP30_uc009wtx.2_Missense_Mutation_p.E280K|ARHGAP30_uc001fxn.1_Missense_Mutation_p.E453K	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	607					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			AGGAAAACTTCCTCCCCATTT	0.572													68	153					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161019326	161019326	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161019326C>T	uc001fxl.2	-	11	1920	c.1574G>A	c.(1573-1575)GGG>GAG	p.G525E	ARHGAP30_uc001fxk.2_Missense_Mutation_p.G525E|ARHGAP30_uc001fxm.2_Missense_Mutation_p.G371E|ARHGAP30_uc009wtx.2_Missense_Mutation_p.G198E|ARHGAP30_uc001fxn.1_Missense_Mutation_p.G371E	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	525					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			ATCCTCTGCCCCCACCCACTC	0.647													32	110					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161021355	161021355	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161021355C>T	uc001fxl.2	-	10	1515	c.1169G>A	c.(1168-1170)CGA>CAA	p.R390Q	ARHGAP30_uc001fxk.2_Missense_Mutation_p.R390Q|ARHGAP30_uc001fxm.2_Missense_Mutation_p.R236Q|ARHGAP30_uc009wtx.2_Missense_Mutation_p.R63Q|ARHGAP30_uc001fxn.1_Missense_Mutation_p.R236Q	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	390					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CCGCCCAGCTCGTGGTGTGCC	0.602													38	77					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161022284	161022284	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161022284C>T	uc001fxl.2	-	8	1232	c.886G>A	c.(886-888)GGT>AGT	p.G296S	ARHGAP30_uc001fxk.2_Missense_Mutation_p.G296S|ARHGAP30_uc001fxm.2_Missense_Mutation_p.G142S|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_Missense_Mutation_p.G142S	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	296					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CCAGAGCGACCTAAATTGAAG	0.547													95	243					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161039388	161039388	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161039388C>T	uc001fxl.2	-	1	373	c.27G>A	c.(25-27)AAG>AAA	p.K9K	ARHGAP30_uc001fxk.2_Silent_p.K9K|ARHGAP30_uc001fxm.2_5'UTR|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_5'UTR	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	9					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CGCTGCCCTTCTTCTTTCCTT	0.622													36	74					0	0	1	0	0
PVRL4	81607	broad.mit.edu	37	1	161044144	161044144	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161044144C>T	uc001fxo.2	-	6	1319	c.1020G>A	c.(1018-1020)GGG>GGA	p.G340G	PVRL4_uc010pjy.1_Silent_p.G19G|PVRL4_uc010pjz.1_Silent_p.G74G	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	340	Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CCACCTGCTTCCCAGAGTCTT	0.612													28	57					0	0	1	0	0
PVRL4	81607	broad.mit.edu	37	1	161049422	161049422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161049422G>A	uc001fxo.2	-	2	696	c.397C>T	c.(397-399)CCC>TCC	p.P133S		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	133	Ig-like V-type 1.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CTGCCGGCGGGGAAGGTGCTG	0.701													11	18					0	0	1	0	0
USP21	27005	broad.mit.edu	37	1	161130934	161130934	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161130934C>T	uc010pke.1	+	3	881	c.504C>T	c.(502-504)ACC>ACT	p.T168T	USP21_uc010pkc.1_Silent_p.T168T|USP21_uc010pkd.1_Silent_p.T168T|USP21_uc010pkf.1_Silent_p.T168T	NM_001014443	NP_001014443	Q9UK80	UBP21_HUMAN	ubiquitin-specific protease 21	168					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding|NEDD8-specific protease activity|protein binding|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)|prostate(1)|breast(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GACCCCCTACCCTGTTCAGCA	0.607													25	65					0	0	1	0	0
NDUFS2	4720	broad.mit.edu	37	1	161180451	161180451	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161180451C>T	uc001fyv.2	+	10	1385	c.937C>T	c.(937-939)CAG>TAG	p.Q313*	NDUFS2_uc010pki.1_Nonsense_Mutation_p.Q215*|NDUFS2_uc001fyw.2_Nonsense_Mutation_p.Q313*|NDUFS2_uc010pkj.1_Nonsense_Mutation_p.Q262*|NDUFS2_uc001fyx.2_Nonsense_Mutation_p.Q287*	NM_004550	NP_004541	O75306	NDUS2_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 2	313					mitochondrial electron transport, NADH to ubiquinone|response to oxidative stress|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|NAD binding|NADH dehydrogenase (ubiquinone) activity|protein binding|quinone binding			skin(1)	1	all_cancers(52;1.16e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		NADH(DB00157)	TGTTTACGACCAGGTTGAGTT	0.527													13	49					0	0	1	0	0
FCER1G	2207	broad.mit.edu	37	1	161188701	161188701	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161188701G>A	uc001fyz.1	+	5	254	c.229G>A	c.(229-231)GAG>AAG	p.E77K	FCER1G_uc001fza.1_Missense_Mutation_p.E78K	NM_004106	NP_004097	P30273	FCERG_HUMAN	Fc fragment of IgE, high affinity I, receptor	77	ITAM.|Cytoplasmic (Potential).				platelet activation	integral to plasma membrane					0	all_cancers(52;1.35e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Benzylpenicilloyl Polylysine(DB00895)	GGAGACTTACGAGACTCTGAA	0.542													26	82					0	0	1	0	0
APOA2	336	broad.mit.edu	37	1	161193180	161193180	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161193180G>A	uc001fzc.1	-	2	70	c.12C>T	c.(10-12)CTC>CTT	p.L4L	APOA2_uc001fzb.1_RNA|TOMM40L_uc010pkk.1_5'Flank|TOMM40L_uc010pkl.1_5'Flank|TOMM40L_uc001fzd.2_5'Flank|TOMM40L_uc009wue.2_5'Flank|TOMM40L_uc009wuf.1_5'Flank|TOMM40L_uc001fze.2_5'Flank	NM_001643	NP_001634	P02652	APOA2_HUMAN	apolipoprotein A-II preproprotein	4					cholesterol efflux|cholesterol homeostasis|diacylglycerol catabolic process|high-density lipoprotein particle assembly|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|interspecies interaction between organisms|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol import|negative regulation of cholesterol transporter activity|negative regulation of cytokine secretion involved in immune response|negative regulation of lipase activity|negative regulation of lipid catabolic process|negative regulation of very-low-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|phospholipid catabolic process|phospholipid efflux|positive regulation of cholesterol esterification|positive regulation of interleukin-8 biosynthetic process|positive regulation of lipid catabolic process|protein folding|regulation of protein stability|response to glucose stimulus|reverse cholesterol transport|triglyceride metabolic process|triglyceride-rich lipoprotein particle remodeling	chylomicron|endoplasmic reticulum lumen|spherical high-density lipoprotein particle|very-low-density lipoprotein particle	apolipoprotein receptor binding|cholesterol binding|high-density lipoprotein particle receptor binding|lipase inhibitor activity|phosphatidylcholine binding|phosphatidylcholine-sterol O-acyltransferase activator activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CAGTTGCTGCGAGCAGCTTCA	0.572													7	24					0	0	1	0	0
TOMM40L	84134	broad.mit.edu	37	1	161196322	161196322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161196322C>T	uc001fzd.2	+	2	272	c.43C>T	c.(43-45)CGC>TGC	p.R15C	APOA2_uc001fzc.1_5'Flank|TOMM40L_uc010pkk.1_RNA|TOMM40L_uc010pkl.1_Missense_Mutation_p.R15C|TOMM40L_uc009wue.2_5'UTR|TOMM40L_uc009wuf.1_RNA|TOMM40L_uc001fze.2_Missense_Mutation_p.R15C	NM_032174	NP_115550	Q969M1	TM40L_HUMAN	translocase of outer mitochondrial membrane 40	15					protein transport	mitochondrial outer membrane|pore complex	porin activity|voltage-gated anion channel activity			large_intestine(1)	1	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GACTTTGCCCCGCCGGAGCCC	0.602													12	44					0	0	1	0	0
NR1I3	9970	broad.mit.edu	37	1	161205715	161205715	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161205715C>T	uc001fzx.2	-	3	363	c.160G>A	c.(160-162)GAA>AAA	p.E54K	TOMM40L_uc009wuf.1_Intron|NR1I3_uc001fzf.2_Missense_Mutation_p.E54K|NR1I3_uc001fzg.2_Missense_Mutation_p.E25K|NR1I3_uc001fzh.2_Missense_Mutation_p.E25K|NR1I3_uc001fzi.2_Missense_Mutation_p.E25K|NR1I3_uc001fzj.2_Missense_Mutation_p.E25K|NR1I3_uc001fzk.2_Missense_Mutation_p.E25K|NR1I3_uc001fzl.2_Missense_Mutation_p.E25K|NR1I3_uc001fzm.2_5'UTR|NR1I3_uc001fzn.2_5'UTR|NR1I3_uc009wug.2_5'UTR|NR1I3_uc001fzp.2_Missense_Mutation_p.E54K|NR1I3_uc001fzo.2_5'UTR|NR1I3_uc001fzq.2_Missense_Mutation_p.E54K|NR1I3_uc001fzr.2_Missense_Mutation_p.E54K|NR1I3_uc001fzs.2_5'UTR|NR1I3_uc001fzt.2_5'UTR|NR1I3_uc001fzu.2_Missense_Mutation_p.E25K|NR1I3_uc001fzv.2_Missense_Mutation_p.E25K|NR1I3_uc001fzw.2_Missense_Mutation_p.E54K|NR1I3_uc001fzy.2_Missense_Mutation_p.E54K|NR1I3_uc001fzz.2_Missense_Mutation_p.E54K|NR1I3_uc001gaa.2_Missense_Mutation_p.E54K|NR1I3_uc001gab.2_Missense_Mutation_p.E54K|NR1I3_uc001gac.2_Missense_Mutation_p.E25K|NR1I3_uc010pkm.1_Missense_Mutation_p.E25K|NR1I3_uc010pkn.1_Missense_Mutation_p.E54K	NM_001077480	NP_001070948	Q14994	NR1I3_HUMAN	constitutive androstane receptor isoform 2	54	NR C4-type.|Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	androgen receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(1)|skin(1)	2	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TTGCTGACTTCACAGCTTCCA	0.532													14	65					0	0	1	0	0
MPZ	4359	broad.mit.edu	37	1	161276165	161276165	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161276165G>A	uc001gaf.3	-	4	605	c.568C>T	c.(568-570)CGG>TGG	p.R190W	MPZ_uc010pko.1_RNA	NM_000530	NP_000521	P25189	MYP0_HUMAN	myelin protein zero	180	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	structural molecule activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)	Breast(1374;0.181)	BRCA - Breast invasive adenocarcinoma(70;0.00376)			CAGCAGTACCGAACCACGTAG	0.647													42	85					0	0	1	0	0
C1orf192	257177	broad.mit.edu	37	1	161334873	161334873	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161334873C>T	uc001gal.2	-	5	422	c.416G>A	c.(415-417)CGA>CAA	p.R139Q		NM_001013625	NP_001013647	Q5VTH2	CA192_HUMAN	hypothetical protein LOC257177	139											0	all_cancers(52;4.64e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GGTTGGACTTCGTGCTTGTTG	0.488													32	87					0	0	1	0	0
FCGR3A	2214	broad.mit.edu	37	1	161514664	161514664	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161514664G>A	uc001gat.3	-	5	541	c.404C>T	c.(403-405)GCT>GTT	p.A135V	FCGR3A_uc001gar.2_Missense_Mutation_p.A171V|FCGR3A_uc001gas.2_Missense_Mutation_p.A170V|FCGR3A_uc009wuh.2_Missense_Mutation_p.A134V|FCGR3A_uc009wui.2_Missense_Mutation_p.A135V	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	135	Extracellular (Potential).|Ig-like C2-type 2.				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CTTATGCAGAGCAGTGTTCTT	0.483													16	52					0	0	1	0	0
FCGR3A	2214	broad.mit.edu	37	1	161519511	161519511	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161519511G>A	uc001gat.3	-	2	153	c.16C>T	c.(16-18)CTC>TTC	p.L6F	FCGR3A_uc001gar.2_Missense_Mutation_p.L42F|FCGR3A_uc001gas.2_Missense_Mutation_p.L42F|FCGR3A_uc009wuh.2_Missense_Mutation_p.L6F|FCGR3A_uc009wui.2_Missense_Mutation_p.L6F	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	6					immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GCAGTTGGGAGGAGCAGCTGC	0.532													17	49					0	0	1	0	0
FCGR2C	9103	broad.mit.edu	37	1	161569556	161569556	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161569556C>T	uc001gav.2	+	8	1034	c.935C>T	c.(934-936)ACT>ATT	p.T312I		NM_201563	NP_963857			Fc fragment of IgG, low affinity IIc, receptor												0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			ATCTACCTGACTCTTCCTCCC	0.408													45	76					0	0	1	0	0
FCGR2B	2213	broad.mit.edu	37	1	161641278	161641278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161641278C>T	uc001gaz.1	+	3	322	c.230C>T	c.(229-231)CCT>CTT	p.P77L	FCGR2B_uc009wum.1_Missense_Mutation_p.P77L|FCGR2B_uc001gay.1_Missense_Mutation_p.P76L|FCGR2B_uc001gba.1_Missense_Mutation_p.P76L|FCGR2B_uc001gbb.1_Missense_Mutation_p.P77L|FCGR2B_uc009wun.1_Missense_Mutation_p.P70L	NM_004001	NP_003992	P31994	FCG2B_HUMAN	Fc fragment of IgG, low affinity IIb, receptor	77	Ig-like C2-type 1.|Extracellular (Potential).				immune response|interspecies interaction between organisms|regulation of immune response	integral to membrane|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	ACTCACAGCCCTGAGAGCGAC	0.582			T	?	ALL								18	77					0	0	1	0	0
DUSP12	11266	broad.mit.edu	37	1	161722918	161722918	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161722918C>T	uc001gbo.2	+	5	739	c.728C>T	c.(727-729)CCT>CTT	p.P243L	DUSP12_uc001gbp.2_Missense_Mutation_p.P113L	NM_007240	NP_009171	Q9UNI6	DUS12_HUMAN	dual specificity phosphatase 12	243					positive regulation of glucokinase activity	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity|zinc ion binding			breast(1)	1	all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00634)			GGAAGTGGACCTATAGCCTTT	0.433													56	136					0	0	1	0	0
ATF6	22926	broad.mit.edu	37	1	161753803	161753803	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161753803C>T	uc001gbr.2	+	4	338	c.271C>T	c.(271-273)CAG>TAG	p.Q91*	ATF6_uc001gbq.1_Nonsense_Mutation_p.Q91*	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	91	Cytoplasmic (Potential).|Transcription activation.				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			GGCAGAACCTCAGCCACTTTC	0.398													42	164					0	0	1	0	0
ATF6	22926	broad.mit.edu	37	1	161821579	161821579	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161821579C>T	uc001gbr.2	+	11	1454	c.1387C>T	c.(1387-1389)CCT>TCT	p.P463S	ATF6_uc001gbq.1_Missense_Mutation_p.P463S	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	463	Poly-Pro.|Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			GCTTTACATTCCTCCACCTCC	0.398													77	200					0	0	1	0	0
OLFML2B	25903	broad.mit.edu	37	1	161954026	161954026	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:161954026G>A	uc001gbu.2	-	8	2116	c.1692C>T	c.(1690-1692)ATC>ATT	p.I564I	OLFML2B_uc001gbt.2_Silent_p.I47I|OLFML2B_uc010pkq.1_Silent_p.I565I	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	564	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			GGCCTGTGCCGATCCAGCTGT	0.582													19	73					0	0	1	0	0
NOS1AP	9722	broad.mit.edu	37	1	162270444	162270444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:162270444G>A	uc001gbv.2	+	4	679	c.292G>A	c.(292-294)GAA>AAA	p.E98K	NOS1AP_uc010pkr.1_Missense_Mutation_p.E93K|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Missense_Mutation_p.E93K	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	98	PID.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			GCAGAAAAAGGAATGGACGTG	0.478													32	97					0	0	1	0	0
C1orf111	284680	broad.mit.edu	37	1	162344300	162344300	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:162344300C>T	uc001gbx.2	-	3	388	c.324G>A	c.(322-324)GAG>GAA	p.E108E		NM_182581	NP_872387	Q5T0L3	CA111_HUMAN	hypothetical protein LOC284680	108								p.E108K(1)		ovary(1)	1	all_hematologic(112;0.15)		BRCA - Breast invasive adenocarcinoma(70;0.0938)			CCAGCTGGCTCTCTTTGTCTG	0.572													64	178					0	0	1	0	0
SH2D1B	117157	broad.mit.edu	37	1	162368759	162368760	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:162368759_162368760GG>AA	uc001gbz.1	-	3	438_439	c.316_317CC>TT	c.(316-318)CCC>TTC	p.P106F	SH2D1B_uc001gca.1_Intron	NM_053282	NP_444512	O14796	SH21B_HUMAN	SH2 domain containing 1B	106										pancreas(1)	1	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			TCTCAAGCTGGGGCTGGTTCTC	0.406													34	73					0	0	1	0	0
DDR2	4921	broad.mit.edu	37	1	162729659	162729659	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:162729659C>T	uc001gcf.2	+	9	1210	c.745C>T	c.(745-747)CAC>TAC	p.H249Y	DDR2_uc001gcg.2_Missense_Mutation_p.H249Y	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	249	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			CCATGAATACCACGTGTGGCC	0.532													17	77					0	0	1	0	0
DDR2	4921	broad.mit.edu	37	1	162740180	162740180	+	Missense_Mutation	SNP	C	T	T	rs140710321	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:162740180C>T	uc001gcf.2	+	13	1847	c.1382C>T	c.(1381-1383)TCA>TTA	p.S461L	DDR2_uc001gcg.2_Missense_Mutation_p.S461L	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	461	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			CGCTCCTCATCACCTAGTGAA	0.498													55	117					0	0	1	0	0
RGS4	5999	broad.mit.edu	37	1	163042253	163042253	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:163042253C>T	uc009wuy.2	+	2	624	c.113C>T	c.(112-114)TCC>TTC	p.S38F	RGS4_uc001gcl.3_Missense_Mutation_p.S135F|RGS4_uc009wuz.2_Missense_Mutation_p.S38F|RGS4_uc009wva.2_Missense_Mutation_p.S20F	NM_005613	NP_005604	P49798	RGS4_HUMAN	regulator of G-protein signaling 4 isoform 2	38					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(2)|central_nervous_system(1)	3						CACAATTCTTCCCACAACAAG	0.383													29	64					0	0	1	0	0
RGS5	8490	broad.mit.edu	37	1	163117238	163117238	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:163117238G>A	uc001gcn.2	-	5	687	c.440C>T	c.(439-441)TCC>TTC	p.S147F	RGS5_uc009wvb.2_RNA	NM_003617	NP_003608	O15539	RGS5_HUMAN	regulator of G-protein signalling 5	147	RGS.				negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity				0			LUSC - Lung squamous cell carcinoma(543;0.187)			GCTGCTCAGGGAAGGTTCCAC	0.463													30	82					0	0	1	0	0
RGS5	8490	broad.mit.edu	37	1	163122409	163122409	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:163122409G>A	uc001gcn.2	-	4	562	c.315C>T	c.(313-315)TCC>TCT	p.S105S	RGS5_uc009wvb.2_RNA	NM_003617	NP_003608	O15539	RGS5_HUMAN	regulator of G-protein signalling 5	105	RGS.				negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity				0			LUSC - Lung squamous cell carcinoma(543;0.187)			TCTTGGCAGGGGACTTGATCT	0.448													72	272					0	0	1	0	0
PBX1	5087	broad.mit.edu	37	1	164761751	164761751	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:164761751C>T	uc001gct.2	+	3	544	c.286C>T	c.(286-288)CAG>TAG	p.Q96*	PBX1_uc010pku.1_Nonsense_Mutation_p.Q96*|PBX1_uc010pkv.1_Nonsense_Mutation_p.Q13*|PBX1_uc001gcs.2_Nonsense_Mutation_p.Q96*|PBX1_uc010pkw.1_5'UTR	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	96					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						CCGAGGAGCCCAGGAGGAGGA	0.488			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								14	35					0	0	1	0	0
PBX1	5087	broad.mit.edu	37	1	164781252	164781252	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:164781252G>A	uc001gct.2	+	6	1121	c.863G>A	c.(862-864)CGA>CAA	p.R288Q	PBX1_uc010pku.1_Missense_Mutation_p.R288Q|PBX1_uc010pkv.1_Missense_Mutation_p.R205Q|PBX1_uc001gcs.2_Missense_Mutation_p.R288Q|PBX1_uc010pkw.1_Missense_Mutation_p.R178Q	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	288	Homeobox; TALE-type.				negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						GGAAATAAGCGAATCCGGTAC	0.388			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								21	53					0	0	1	0	0
LMX1A	4009	broad.mit.edu	37	1	165175145	165175145	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165175145C>T	uc001gcy.1	-	7	1165	c.944G>A	c.(943-945)GGT>GAT	p.G315D	LMX1A_uc001gcz.1_Missense_Mutation_p.G315D|LMX1A_uc001gcw.1_Missense_Mutation_p.G33D|LMX1A_uc001gcx.1_Missense_Mutation_p.G66D	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	315						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					TGGGGTGAGACCCTGTCGGAA	0.577													28	57					0	0	1	0	0
LMX1A	4009	broad.mit.edu	37	1	165179939	165179939	+	Silent	SNP	C	T	T	rs146395249	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165179939C>T	uc001gcy.1	-	5	965	c.744G>A	c.(742-744)GCG>GCA	p.A248A	LMX1A_uc001gcz.1_Silent_p.A248A|LMX1A_uc001gcw.1_5'UTR|LMX1A_uc001gcx.1_5'UTR	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	248	Homeobox.|Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					AGGTTACCTTCGCTCTCTGGT	0.473													20	40					0	0	1	0	0
LMX1A	4009	broad.mit.edu	37	1	165179969	165179969	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165179969G>A	uc001gcy.1	-	5	935	c.714C>T	c.(712-714)GTC>GTT	p.V238V	LMX1A_uc001gcz.1_Silent_p.V238V|LMX1A_uc001gcw.1_5'UTR|LMX1A_uc001gcx.1_5'UTR	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	238	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					ACACCTGGACGACACGGACAC	0.483													18	35					0	0	1	0	0
LMX1A	4009	broad.mit.edu	37	1	165179979	165179979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165179979C>T	uc001gcy.1	-	5	925	c.704G>A	c.(703-705)AGT>AAT	p.S235N	LMX1A_uc001gcz.1_Missense_Mutation_p.S235N|LMX1A_uc001gcw.1_Translation_Start_Site|LMX1A_uc001gcx.1_Translation_Start_Site	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	235	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					GACACGGACACTCAGCCCTGT	0.483													7	44					0	0	1	0	0
LMX1A	4009	broad.mit.edu	37	1	165182897	165182897	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165182897G>A	uc001gcy.1	-	4	871	c.650C>T	c.(649-651)TCC>TTC	p.S217F	LMX1A_uc001gcz.1_Missense_Mutation_p.S217F|LMX1A_uc001gcw.1_5'Flank|LMX1A_uc001gcx.1_5'Flank	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	217	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					GGGCTTGGAGGATACTTCAAA	0.562													60	124					0	0	1	0	0
RXRG	6258	broad.mit.edu	37	1	165378827	165378827	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165378827G>A	uc001gda.2	-	7	1314	c.1014C>T	c.(1012-1014)GCC>GCT	p.A338A		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	338	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	CAGCACTGTGGGCACTGCTCC	0.438													13	29					0	0	1	0	0
RXRG	6258	broad.mit.edu	37	1	165386283	165386283	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165386283C>T	uc001gda.2	-	4	917	c.617G>A	c.(616-618)AGG>AAG	p.R206K		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	206	Hinge.|Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	CTCACCTTCCCTCTTCATGCC	0.512													14	59					0	0	1	0	0
LRRC52	440699	broad.mit.edu	37	1	165533037	165533037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165533037C>T	uc001gde.2	+	2	974	c.918C>T	c.(916-918)GTC>GTT	p.V306V	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	306	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					CGAGCTCGGTCCAGGAGTTCC	0.567													37	93					0	0	1	0	0
LOC400794	400794	broad.mit.edu	37	1	165551093	165551093	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165551093C>T	uc001gdc.2	-	1		c.249G>A			LOC400794_uc001gdd.2_RNA	NR_026744				Homo sapiens cDNA FLJ35813 fis, clone TESTI2006067.												0						TCTCCCTGCCCATCACGGAAT	0.557													3	5					0	0	1	0	0
ALDH9A1	223	broad.mit.edu	37	1	165652225	165652225	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165652225G>A	uc001gdh.1	-	3	555	c.450C>T	c.(448-450)TCC>TCT	p.S150S	ALDH9A1_uc010pky.1_Silent_p.S56S|ALDH9A1_uc010pkz.1_Silent_p.S140S|ALDH9A1_uc010pla.1_Silent_p.S56S	NM_000696	NP_000687	P49189	AL9A1_HUMAN	aldehyde dehydrogenase 9A1	126					carnitine biosynthetic process|cellular aldehyde metabolic process|hormone metabolic process|neurotransmitter biosynthetic process	cytosol|plasma membrane	3-chloroallyl aldehyde dehydrogenase activity|4-trimethylammoniobutyraldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aminobutyraldehyde dehydrogenase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				NADH(DB00157)	TACCAGCCATGGATGCAGCCA	0.388													28	50					0	0	1	0	0
TMCO1	54499	broad.mit.edu	37	1	165697266	165697266	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:165697266G>A	uc001gdj.3	-	7	710	c.561C>T	c.(559-561)TTC>TTT	p.F187F	TMCO1_uc001gdl.3_Silent_p.F103F|TMCO1_uc001gdm.3_Silent_p.F103F|TMCO1_uc001gdk.3_Silent_p.F175F|TMCO1_uc001gdn.3_RNA	NM_019026	NP_061899	Q9UM00	TMCO1_HUMAN	transmembrane and coiled-coil domains 1	187						endoplasmic reticulum membrane|Golgi membrane|integral to membrane				central_nervous_system(1)	1	all_hematologic(923;0.048)|Acute lymphoblastic leukemia(8;0.155)					GAGTTCAAGAGAACTTCCCAG	0.473													28	90					0	0	1	0	0
FAM78B	149297	broad.mit.edu	37	1	166135291	166135292	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:166135291_166135292GG>AA	uc001gdr.2	-	2	784_785	c.194_195CC>TT	c.(193-195)ACC>ATT	p.T65I	FAM78B_uc010plc.1_RNA	NM_001017961	NP_001017961	Q5VT40	FA78B_HUMAN	hypothetical protein LOC149297	65										central_nervous_system(1)|skin(1)	2	all_hematologic(923;0.0813)|Acute lymphoblastic leukemia(8;0.155)					CCACCACCCAGGTCTCGTGGCG	0.649													13	24					0	0	1	0	0
ILDR2	387597	broad.mit.edu	37	1	166891946	166891946	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:166891946C>T	uc001gdx.1	-	8	1151	c.1095G>A	c.(1093-1095)GGG>GGA	p.G365G		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	365	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						TCTCCAAGTCCCCAGACACAG	0.532													36	198					0	0	1	0	0
ILDR2	387597	broad.mit.edu	37	1	166896371	166896371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:166896371C>T	uc001gdx.1	-	7	983	c.927G>A	c.(925-927)ATG>ATA	p.M309I		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	309	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						ACAGGACCTTCATGGAGTCTC	0.463													62	107					0	0	1	0	0
MAEL	84944	broad.mit.edu	37	1	166959017	166959017	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:166959017G>A	uc001gdy.1	+	2	247	c.176G>A	c.(175-177)CGA>CAA	p.R59Q	MAEL_uc001gdz.1_Intron|MAEL_uc009wvf.1_5'Flank	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	59	HMG box.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						GAAATGGCTCGAGAATGGAGG	0.473													11	32					0	0	1	0	0
MAEL	84944	broad.mit.edu	37	1	166959042	166959042	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:166959042G>A	uc001gdy.1	+	2	272	c.201G>A	c.(199-201)AAG>AAA	p.K67K	MAEL_uc001gdz.1_Intron|MAEL_uc009wvf.1_5'Flank	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	67	HMG box.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						CTCAGGGAAAGGACCCTGGGC	0.393													13	29					0	0	1	0	0
MAEL	84944	broad.mit.edu	37	1	166961934	166961934	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:166961934G>A	uc001gdy.1	+	4	408	c.337G>A	c.(337-339)GGC>AGC	p.G113S	MAEL_uc001gdz.1_Missense_Mutation_p.G82S|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	113					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						TCTCCTTGGAGGCATTTTTTA	0.353													21	47					0	0	1	0	0
GPA33	10223	broad.mit.edu	37	1	167032894	167032894	+	Missense_Mutation	SNP	C	T	T	rs145965350		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167032894C>T	uc001gea.1	-	4	840	c.496G>A	c.(496-498)GAG>AAG	p.E166K		NM_005814	NP_005805	Q99795	GPA33_HUMAN	transmembrane glycoprotein A33 precursor	166	Ig-like C2-type.|Extracellular (Potential).					integral to plasma membrane	receptor activity				0						GGTGAGCCCTCCTTTGATTGG	0.562													33	103					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167086743	167086743	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167086743G>A	uc001geb.1	+	3	384	c.384G>A	c.(382-384)GAG>GAA	p.E128E		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	128					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						ATCGCCAAGAGGCGCCCTGGA	0.547													5	15					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167095218	167095218	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167095218G>A	uc001geb.1	+	5	850	c.850G>A	c.(850-852)GAG>AAG	p.E284K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	284					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GGAGAGAGAAGAGGACTATGG	0.617													11	50					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167095870	167095870	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167095870G>A	uc001geb.1	+	5	1502	c.1502G>A	c.(1501-1503)AGA>AAA	p.R501K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	501					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AAGAGCAAGAGAGAGGAGGCG	0.607													19	40					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167096187	167096187	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167096187G>A	uc001geb.1	+	5	1819	c.1819G>A	c.(1819-1821)GAG>AAG	p.E607K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	607					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GAACAAGGAGGAGGTGGTGGA	0.612													5	30					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167096388	167096388	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167096388G>A	uc001geb.1	+	5	2020	c.2020G>A	c.(2020-2022)GAC>AAC	p.D674N		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	674					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CGCTGATGGGGACACGACGTC	0.632													7	45					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167096686	167096686	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167096686G>A	uc001geb.1	+	5	2318	c.2318G>A	c.(2317-2319)GGA>GAA	p.G773E		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	773					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						ATGCTTAGTGGACACAGCAGC	0.577													15	84					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167097327	167097327	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167097327G>A	uc001geb.1	+	5	2959	c.2959G>A	c.(2959-2961)GAA>AAA	p.E987K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	987	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CCAGTCAGAGGAACAGGACAC	0.517													8	122					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167097768	167097768	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167097768G>A	uc001geb.1	+	5	3400	c.3400G>A	c.(3400-3402)GAT>AAT	p.D1134N		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1134					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AGAAATGGACGATGAAGCCAT	0.522													16	40					0	0	1	0	0
CD247	919	broad.mit.edu	37	1	167407814	167407814	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167407814C>T	uc001gei.3	-	4	438	c.293G>A	c.(292-294)GGA>GAA	p.G98E	CD247_uc001gej.3_Missense_Mutation_p.G98E|CD247_uc001gek.2_Missense_Mutation_p.G98E	NM_198053	NP_932170	P20963	CD3Z_HUMAN	T-cell receptor zeta chain isoform 1 precursor	98	Cytoplasmic (Potential).				interspecies interaction between organisms|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytoplasm|integral to membrane	protein homodimerization activity|transmembrane receptor activity				0			LUSC - Lung squamous cell carcinoma(543;0.236)			TACCGGCTTTCCCCCCATCTC	0.562													52	89					0	0	1	0	0
CD247	919	broad.mit.edu	37	1	167487664	167487664	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167487664C>T	uc001gei.3	-	1	184	c.39G>A	c.(37-39)CAG>CAA	p.Q13Q	CD247_uc001gej.3_Silent_p.Q13Q|CD247_uc001gek.2_Silent_p.Q13Q	NM_198053	NP_932170	P20963	CD3Z_HUMAN	T-cell receptor zeta chain isoform 1 precursor	13					interspecies interaction between organisms|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytoplasm|integral to membrane	protein homodimerization activity|transmembrane receptor activity				0			LUSC - Lung squamous cell carcinoma(543;0.236)			GCAACTGTGCCTGCAGGATGG	0.597													6	71					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167659303	167659303	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167659303G>A	uc001gem.2	+	4	403	c.216G>A	c.(214-216)GCG>GCA	p.A72A	RCSD1_uc010pli.1_Silent_p.A42A	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	72										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					CACCCAATGCGAGCCACCCTC	0.453													36	109					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167659342	167659342	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167659342G>A	uc001gem.2	+	4	442	c.255G>A	c.(253-255)CTG>CTA	p.L85L	RCSD1_uc010pli.1_Silent_p.L55L	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	85										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					GCTCGCCTCTGATTGAGAAGC	0.423													20	81					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167666526	167666526	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167666526G>A	uc001gem.2	+	6	852	c.665G>A	c.(664-666)GGA>GAA	p.G222E	RCSD1_uc010pli.1_Missense_Mutation_p.G192E	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	222										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					TCCAGTGAGGGAGCAGCGGGA	0.597													24	40					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167666583	167666583	+	Missense_Mutation	SNP	G	A	A	rs142342977	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167666583G>A	uc001gem.2	+	6	909	c.722G>A	c.(721-723)AGG>AAG	p.R241K	RCSD1_uc010pli.1_Missense_Mutation_p.R211K	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	241	RCSD.									ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					CCTCTGAGGAGGTCACCCAGC	0.617													13	31					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167666689	167666689	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167666689G>A	uc001gem.2	+	6	1015	c.828G>A	c.(826-828)CCG>CCA	p.P276P	RCSD1_uc010pli.1_Silent_p.P246P	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	276	RCSD.									ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					GCCAGCACCCGGCCCAAGAGG	0.632													5	13					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167798579	167798579	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167798579G>A	uc001ger.2	-	26	3974	c.3676C>T	c.(3676-3678)CAC>TAC	p.H1226Y	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Missense_Mutation_p.H1134Y|ADCY10_uc010plj.1_Missense_Mutation_p.H1073Y	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1226					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TACTTGCAGTGAAAAAGATAA	0.433													30	110					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167802338	167802338	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167802338G>A	uc001ger.2	-	25	3778	c.3480C>T	c.(3478-3480)CTC>CTT	p.L1160L	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Silent_p.L1068L|ADCY10_uc010plj.1_Silent_p.L1007L	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1160					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TTCGGTTGAGGAGCTTCAGTG	0.453													101	246					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167814888	167814888	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167814888G>A	uc001ger.2	-	21	3218	c.2920C>T	c.(2920-2922)CCC>TCC	p.P974S	ADCY10_uc009wvk.2_Missense_Mutation_p.P882S|ADCY10_uc010plj.1_Missense_Mutation_p.P821S|ADCY10_uc009wvl.2_Missense_Mutation_p.P973S	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	974					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TGATGATAGGGAATGAAGTCC	0.448													33	68					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167814979	167814979	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167814979C>T	uc001ger.2	-	21	3127	c.2829G>A	c.(2827-2829)AAG>AAA	p.K943K	ADCY10_uc009wvk.2_Silent_p.K851K|ADCY10_uc010plj.1_Silent_p.K790K|ADCY10_uc009wvl.2_Silent_p.K942K	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	943					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TTCTCTGGTCCTTGAGCCACA	0.498													8	98					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167815251	167815251	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167815251G>A	uc001ger.2	-	20	2986	c.2688C>T	c.(2686-2688)TCC>TCT	p.S896S	ADCY10_uc009wvk.2_Silent_p.S804S|ADCY10_uc010plj.1_Silent_p.S743S|ADCY10_uc009wvl.2_Silent_p.S895S	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	896					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TCAGAGACAAGGAACGATAGT	0.453													11	99					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167823624	167823624	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167823624C>T	uc001ger.2	-	18	2573	c.2275G>A	c.(2275-2277)GAA>AAA	p.E759K	ADCY10_uc009wvk.2_Missense_Mutation_p.E667K|ADCY10_uc010plj.1_Missense_Mutation_p.E606K|ADCY10_uc009wvl.2_Missense_Mutation_p.E758K	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	759					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TTTGTCTTTTCCTCAGACTCC	0.438													39	121					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167863177	167863177	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167863177G>A	uc001ger.2	-	8	1040	c.742C>T	c.(742-744)CTC>TTC	p.L248F	ADCY10_uc009wvk.2_Missense_Mutation_p.L156F|ADCY10_uc010plj.1_Missense_Mutation_p.L95F|ADCY10_uc009wvl.2_Missense_Mutation_p.L247F|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	248					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						AGCCTCAGGAGGTCTAAGAAG	0.502													9	28					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167865839	167865839	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:167865839G>T	uc001ger.2	-	7	1031	c.733C>A	c.(733-735)CAC>AAC	p.H245N	ADCY10_uc009wvk.2_Missense_Mutation_p.H153N|ADCY10_uc010plj.1_Missense_Mutation_p.H92N|ADCY10_uc009wvl.2_Missense_Mutation_p.H244N|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	245					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TTACTTTTGTGCTCACCAGAA	0.398													99	235					3.69185e-53	3.7156e-53	1	1	0
DCAF6	55827	broad.mit.edu	37	1	168014196	168014196	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:168014196C>T	uc001gew.2	+	14	2000	c.1758C>T	c.(1756-1758)GAC>GAT	p.D586D	DCAF6_uc001gev.2_Silent_p.D606D|DCAF6_uc001gex.2_Silent_p.D663D|DCAF6_uc010plk.1_Silent_p.D632D|DCAF6_uc001gey.2_Silent_p.D459D|DCAF6_uc001gez.2_5'UTR	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	586					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AAAGAAATGACCTCAATCTTG	0.428													53	172					0	0	1	0	0
GPR161	23432	broad.mit.edu	37	1	168066361	168066361	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:168066361G>A	uc001gfc.2	-	5	798	c.484C>T	c.(484-486)CCC>TCC	p.P162S	GPR161_uc001gfb.2_Missense_Mutation_p.P30S|GPR161_uc010pll.1_Missense_Mutation_p.P72S|GPR161_uc010plm.1_Missense_Mutation_p.P48S|GPR161_uc009wvo.2_Missense_Mutation_p.P179S|GPR161_uc001gfd.2_Missense_Mutation_p.P162S|GPR161_uc010pln.1_Missense_Mutation_p.P182S|GPR161_uc001gfe.1_Missense_Mutation_p.P162S	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	162	Helical; Name=4; (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					CCAAACAGGGGTGGCAGGCAG	0.572													26	54					0	0	1	0	0
GPR161	23432	broad.mit.edu	37	1	168066390	168066390	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:168066390C>T	uc001gfc.2	-	5	769	c.455G>A	c.(454-456)TGG>TAG	p.W152*	GPR161_uc001gfb.2_Nonsense_Mutation_p.W20*|GPR161_uc010pll.1_Nonsense_Mutation_p.W62*|GPR161_uc010plm.1_Nonsense_Mutation_p.W38*|GPR161_uc009wvo.2_Nonsense_Mutation_p.W169*|GPR161_uc001gfd.2_Nonsense_Mutation_p.W152*|GPR161_uc010pln.1_Nonsense_Mutation_p.W172*|GPR161_uc001gfe.1_Nonsense_Mutation_p.W152*	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	152	Helical; Name=4; (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					CGAGTGAAGCCAGATGTAGAC	0.552													6	86					0	0	1	0	0
GPR161	23432	broad.mit.edu	37	1	168073894	168073894	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:168073894G>A	uc001gfc.2	-	4	509	c.195C>T	c.(193-195)TTC>TTT	p.F65F	GPR161_uc001gfb.2_Intron|GPR161_uc010pll.1_Intron|GPR161_uc010plm.1_Intron|GPR161_uc009wvo.2_Silent_p.F82F|GPR161_uc001gfd.2_Silent_p.F65F|GPR161_uc010pln.1_Silent_p.F85F|GPR161_uc001gfe.1_Silent_p.F65F	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	65	Helical; Name=2; (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					GGCTGAAGACGAACTTGTTGC	0.517													47	84					0	0	1	0	0
TIPRL	261726	broad.mit.edu	37	1	168153170	168153170	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:168153170C>T	uc001gfg.2	+	2	280	c.135C>T	c.(133-135)CTC>CTT	p.L45L	TIPRL_uc001gfh.2_Silent_p.L45L|TIPRL_uc001gff.2_Silent_p.L45L	NM_152902	NP_690866	O75663	TIPRL_HUMAN	TIP41, TOR signalling pathway regulator-like	45					DNA damage checkpoint|negative regulation of protein phosphatase type 2A activity	cytoplasm	protein binding			ovary(1)	1	all_hematologic(923;0.215)					TGCCATCTCTCCCTGAAATGA	0.388													40	98					0	0	1	0	0
TBX19	9095	broad.mit.edu	37	1	168266990	168266990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:168266990C>T	uc001gfl.2	+	4	683	c.632C>T	c.(631-633)CCT>CTT	p.P211L	TBX19_uc001gfj.3_Missense_Mutation_p.P142L|TBX19_uc001gfm.2_5'UTR	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	211	T-box.				anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					AAGTACAATCCTTTTGCCAAA	0.338													22	26					0	0	1	0	0
TBX19	9095	broad.mit.edu	37	1	168278043	168278043	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:168278043C>T	uc001gfl.2	+	7	1031	c.980C>T	c.(979-981)TCC>TTC	p.S327F	TBX19_uc001gfj.3_Missense_Mutation_p.S195F|TBX19_uc001gfm.2_Missense_Mutation_p.S30F	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	327					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					AGCTGGACTTCCTTATCCTCC	0.473													35	115					0	0	1	0	0
XCL2	6846	broad.mit.edu	37	1	168511246	168511246	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:168511246G>A	uc001gfn.3	-	2	194	c.161C>T	c.(160-162)TCC>TTC	p.S54F		NM_003175	NP_003166	Q9UBD3	XCL2_HUMAN	chemokine (C motif) ligand 2 precursor	54					blood circulation|chemotaxis|immune response|signal transduction	extracellular space	chemokine activity			ovary(1)	1	all_hematologic(923;0.215)					TGCTCTCAAGGAGCCTTCCGT	0.512													25	49					0	0	1	0	0
DPT	1805	broad.mit.edu	37	1	168698157	168698157	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:168698157C>T	uc001gfp.2	-	1	272	c.256G>A	c.(256-258)GAA>AAA	p.E86K		NM_001937	NP_001928	Q07507	DERM_HUMAN	dermatopontin precursor	86	2 X 53-55 AA tandem repeats.|1-2.|3 X 6 AA repeats of D-R-[EQ]-W-[NQK]- [FY].				cell adhesion	extracellular space|proteinaceous extracellular matrix				ovary(1)	1	all_hematologic(923;0.208)					TCCGTGGGTTCCCCGAGGCTC	0.592													36	65					0	0	1	0	0
C1orf114	57821	broad.mit.edu	37	1	169388371	169388371	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169388371C>T	uc001gga.1	-	4	1263	c.1095G>A	c.(1093-1095)GAG>GAA	p.E365E	C1orf114_uc001gfz.1_Silent_p.E365E|C1orf114_uc009wvq.1_Silent_p.E365E|C1orf114_uc001ggb.2_Silent_p.E365E	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	365	Potential.										0	all_hematologic(923;0.208)					TTTTTTCTTTCTCTTCTTCTA	0.323													5	58					0	0	1	0	0
C1orf114	57821	broad.mit.edu	37	1	169390881	169390881	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169390881G>A	uc001gga.1	-	3	956	c.788C>T	c.(787-789)TCT>TTT	p.S263F	C1orf114_uc001gfz.1_Missense_Mutation_p.S263F|C1orf114_uc009wvq.1_Missense_Mutation_p.S263F|C1orf114_uc001ggb.2_Missense_Mutation_p.S263F|C1orf114_uc001ggc.1_Missense_Mutation_p.S263F	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	263											0	all_hematologic(923;0.208)					GCCACTGACAGAGGAGTTGGA	0.458													27	198					0	0	1	0	0
C1orf114	57821	broad.mit.edu	37	1	169394081	169394081	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169394081C>T	uc001gga.1	-	2	253	c.85G>A	c.(85-87)GAA>AAA	p.E29K	C1orf114_uc001gfz.1_Missense_Mutation_p.E29K|C1orf114_uc009wvq.1_Missense_Mutation_p.E29K|C1orf114_uc001ggb.2_Missense_Mutation_p.E29K|C1orf114_uc001ggc.1_Missense_Mutation_p.E29K	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	29											0	all_hematologic(923;0.208)					TTTTCATTTTCATTAATTAAC	0.249													19	84					0	0	1	0	0
C1orf114	57821	broad.mit.edu	37	1	169394126	169394126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169394126C>T	uc001gga.1	-	2	208	c.40G>A	c.(40-42)GAA>AAA	p.E14K	C1orf114_uc001gfz.1_Missense_Mutation_p.E14K|C1orf114_uc009wvq.1_Missense_Mutation_p.E14K|C1orf114_uc001ggb.2_Missense_Mutation_p.E14K|C1orf114_uc001ggc.1_Missense_Mutation_p.E14K	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	14											0	all_hematologic(923;0.208)					TCTTCGTATTCTTCACTTTTC	0.308													25	62					0	0	1	0	0
SLC19A2	10560	broad.mit.edu	37	1	169446940	169446940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169446940G>A	uc001gge.3	-	2	464	c.260C>T	c.(259-261)CCT>CTT	p.P87L	SLC19A2_uc001ggf.3_Intron	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	87	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					AAGGAACACAGGAAACAGTAG	0.403													10	21					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169484792	169484792	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169484792C>T	uc001ggg.1	-	24	6563	c.6418G>A	c.(6418-6420)GGC>AGC	p.G2140S		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	2140	F5/8 type C 2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GACTTGCAGCCCTGTGTTATA	0.398													46	126					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169509663	169509663	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169509663C>T	uc001ggg.1	-	13	4810	c.4665G>A	c.(4663-4665)AGG>AGA	p.R1555R		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1555	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TGATGTTTGTCCTAACATCAG	0.418													29	47					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169511109	169511109	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169511109G>A	uc001ggg.1	-	13	3364	c.3219C>T	c.(3217-3219)TCC>TCT	p.S1073S		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1073	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	ATGTTTCATTGGATTTATGAA	0.423													77	266					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169511128	169511128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169511128G>A	uc001ggg.1	-	13	3345	c.3200C>T	c.(3199-3201)TCG>TTG	p.S1067L		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1067	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	AAGCACCAACGAATGCTTAAG	0.438													63	298					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169511239	169511239	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169511239C>T	uc001ggg.1	-	13	3234	c.3089G>A	c.(3088-3090)CGA>CAA	p.R1030Q		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1030	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TTTCTTTTTTCGTGTCTTAAT	0.408													114	243					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169512260	169512260	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169512260C>T	uc001ggg.1	-	13	2213	c.2068G>A	c.(2068-2070)GAA>AAA	p.E690K		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	690					cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TATGAGTCTTCATCATCATCT	0.393													43	170					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169519217	169519217	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169519217C>T	uc001ggg.1	-	10	1578	c.1433G>A	c.(1432-1434)GGG>GAG	p.G478E	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	478	F5/8 type A 2.|Plastocyanin-like 3.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	ATAGGTTTCCCCTGGTTGAAC	0.353													38	146					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169525903	169525903	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169525903G>A	uc001ggg.1	-	6	1078	c.933C>T	c.(931-933)CTC>CTT	p.L311L	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	311	F5/8 type A 1.|Plastocyanin-like 2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GTTTTGGGGTGAGAGAAGATA	0.478													6	62					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169529932	169529932	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169529932G>A	uc001ggg.1	-	4	591	c.446C>T	c.(445-447)ACC>ATC	p.T149I	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	149	F5/8 type A 1.|Plastocyanin-like 1.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CCATTCATAGGTGTATTCTCG	0.507													33	124					0	0	1	0	0
SELP	6403	broad.mit.edu	37	1	169562877	169562877	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169562877G>A	uc001ggi.3	-	14	2438	c.2373C>T	c.(2371-2373)CTC>CTT	p.L791L	SELP_uc001ggh.2_Intron|SELP_uc009wvr.2_Silent_p.L790L	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	791	Helical; (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	GCAAAGCCAGGAGCGTCCCAC	0.413													9	58					0	0	1	0	0
SELP	6403	broad.mit.edu	37	1	169572341	169572341	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169572341C>T	uc001ggi.3	-	10	1693	c.1628G>A	c.(1627-1629)GGA>GAA	p.G543E	SELP_uc001ggh.2_Missense_Mutation_p.G378E|SELP_uc009wvr.2_Missense_Mutation_p.G543E	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	543	Extracellular (Potential).|Sushi 6.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CAAAGAATATCCCTCGTCACA	0.473													42	84					0	0	1	0	0
SELP	6403	broad.mit.edu	37	1	169586315	169586315	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169586315C>T	uc001ggi.3	-	3	497	c.432G>A	c.(430-432)AAG>AAA	p.K144K	SELP_uc001ggh.2_Translation_Start_Site|SELP_uc009wvr.2_Silent_p.K144K	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	144	Extracellular (Potential).|C-type lectin.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CATCATTCCACTTGCCAGGGG	0.453													49	145					0	0	1	0	0
SELL	6402	broad.mit.edu	37	1	169677869	169677869	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169677869C>T	uc001ggk.2	-	3	359	c.161G>A	c.(160-162)AGA>AAA	p.R54K	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.R7K|SELL_uc001ggl.1_Missense_Mutation_p.R67K	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	54	Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					GCAGAATCTTCTAGCCCTTTG	0.438													9	15					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169696610	169696610	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169696610C>T	uc001ggm.3	-	10	1682	c.1525G>A	c.(1525-1527)GAG>AAG	p.E509K	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	509	Extracellular (Potential).|Sushi 6.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					AACACGGGCTCCCCACTGCAG	0.522													16	47					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169696913	169696913	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169696913C>T	uc001ggm.3	-	9	1592	c.1435G>A	c.(1435-1437)GGA>AGA	p.G479R	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	479	Extracellular (Potential).|Sushi 5.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					GTCCATTGTCCCTGAGATGTG	0.428													30	118					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169696962	169696962	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169696962C>T	uc001ggm.3	-	9	1543	c.1386G>A	c.(1384-1386)GAG>GAA	p.E462E	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	462	Extracellular (Potential).|Sushi 5.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CAAATCCCTCCTCACAGCTGA	0.502													33	118					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169697034	169697034	+	Silent	SNP	C	T	T	rs147467969	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169697034C>T	uc001ggm.3	-	9	1471	c.1314G>A	c.(1312-1314)AAG>AAA	p.K438K	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	438	Extracellular (Potential).|Sushi 5.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TCACCAAACCCTTCGGGGGCT	0.488													28	92					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169697037	169697037	+	Silent	SNP	C	T	T	rs144324234	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169697037C>T	uc001ggm.3	-	9	1468	c.1311G>A	c.(1309-1311)CCG>CCA	p.P437P	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	437	Extracellular (Potential).|Sushi 5.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CCAAACCCTTCGGGGGCTGGT	0.488													29	90					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169698359	169698359	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169698359C>T	uc001ggm.3	-	7	1215	c.1058G>A	c.(1057-1059)GGG>GAG	p.G353E	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	353	Extracellular (Potential).|Sushi 3.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TGTCCACTGCCCTTGAGTGGT	0.463													26	56					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169698458	169698458	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169698458G>A	uc001ggm.3	-	7	1116	c.959C>T	c.(958-960)TCC>TTC	p.S320F	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	320	Extracellular (Potential).|Sushi 3.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TCCAGCAGGGGAATGGCTGCA	0.522													10	37					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169701980	169701980	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169701980G>A	uc001ggm.3	-	3	354	c.197C>T	c.(196-198)TCA>TTA	p.S66L	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	66	Extracellular (Potential).|C-type lectin.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					ATAACTTGGTGAATAGCTCAA	0.428													23	79					0	0	1	0	0
KIFAP3	22920	broad.mit.edu	37	1	169930250	169930250	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:169930250G>A	uc001ggv.2	-	18	2381	c.2110C>T	c.(2110-2112)CGA>TGA	p.R704*	KIFAP3_uc010plx.1_Nonsense_Mutation_p.R406*	NM_014970	NP_055785	Q92845	KIFA3_HUMAN	kinesin-associated protein 3	704					blood coagulation|plus-end-directed vesicle transport along microtubule|protein complex assembly|signal transduction	centrosome|condensed nuclear chromosome|cytosol|endoplasmic reticulum|kinesin II complex|spindle microtubule	kinesin binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GGCTCAATTCGATCATCACCA	0.408													36	67					0	0	1	0	0
KIFAP3	22920	broad.mit.edu	37	1	170008397	170008397	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:170008397G>A	uc001ggv.2	-	4	623	c.352C>T	c.(352-354)CCA>TCA	p.P118S	KIFAP3_uc010ply.1_Missense_Mutation_p.P40S|KIFAP3_uc001ggw.1_Missense_Mutation_p.P74S	NM_014970	NP_055785	Q92845	KIFA3_HUMAN	kinesin-associated protein 3	118					blood coagulation|plus-end-directed vesicle transport along microtubule|protein complex assembly|signal transduction	centrosome|condensed nuclear chromosome|cytosol|endoplasmic reticulum|kinesin II complex|spindle microtubule	kinesin binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AAAGGAGGTGGATCTTTAGGC	0.313													12	22					0	0	1	0	0
PRRX1	5396	broad.mit.edu	37	1	170688895	170688895	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:170688895G>A	uc001ghf.2	+	2	317	c.270G>A	c.(268-270)AAG>AAA	p.K90K	PRRX1_uc001ghe.2_Silent_p.K90K	NM_022716	NP_073207	P54821	PRRX1_HUMAN	paired mesoderm homeobox 1 isoform pmx-1b	90						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AAGAAAAAAAGAAGAGAAAGC	0.433													6	27					0	0	1	0	0
PRRX1	5396	broad.mit.edu	37	1	170688909	170688909	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:170688909G>A	uc001ghf.2	+	2	331	c.284G>A	c.(283-285)CGA>CAA	p.R95Q	PRRX1_uc001ghe.2_Missense_Mutation_p.R95Q	NM_022716	NP_073207	P54821	PRRX1_HUMAN	paired mesoderm homeobox 1 isoform pmx-1b	95	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGAAAGCAGCGAAGGAATAGG	0.458													9	29					0	0	1	0	0
C1orf129	80133	broad.mit.edu	37	1	170940958	170940958	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:170940958C>T	uc001ghg.2	+	8	680	c.550C>T	c.(550-552)CCC>TCC	p.P184S	C1orf129_uc009wvy.2_5'UTR|C1orf129_uc010plz.1_Missense_Mutation_p.P184S	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	184							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCATGAAGATCCCTCGATTGT	0.438													81	223					0	0	1	0	0
C1orf129	80133	broad.mit.edu	37	1	170952658	170952658	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:170952658G>A	uc001ghg.2	+	9	842	c.712G>A	c.(712-714)GAA>AAA	p.E238K	C1orf129_uc009wvy.2_Missense_Mutation_p.E45K|C1orf129_uc010plz.1_Missense_Mutation_p.E238K	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	238							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TCAACAAGACGAAAGTAAAAT	0.358													7	39					0	0	1	0	0
C1orf129	80133	broad.mit.edu	37	1	170964567	170964567	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:170964567C>T	uc001ghg.2	+	13	1362	c.1232C>T	c.(1231-1233)TCC>TTC	p.S411F	C1orf129_uc009wvy.2_Missense_Mutation_p.S218F|C1orf129_uc010plz.1_Missense_Mutation_p.S411F	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	411							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCTCTTGGTTCCTACAGGAAA	0.478													41	108					0	0	1	0	0
C1orf129	80133	broad.mit.edu	37	1	170964646	170964646	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:170964646G>A	uc001ghg.2	+	13	1441	c.1311G>A	c.(1309-1311)CTG>CTA	p.L437L	C1orf129_uc009wvy.2_Silent_p.L244L|C1orf129_uc010plz.1_Silent_p.L437L	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	437							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ACAGTGAGCTGAAACCGATAC	0.458													27	70					0	0	1	0	0
C1orf129	80133	broad.mit.edu	37	1	170965663	170965663	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:170965663C>T	uc001ghg.2	+	14	1483	c.1353C>T	c.(1351-1353)GCC>GCT	p.A451A	C1orf129_uc009wvy.2_Silent_p.A258A|C1orf129_uc010plz.1_Silent_p.A451A	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	451							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCCAGGATGCCCTGAGAGTTC	0.418													30	86					0	0	1	0	0
FMO3	2328	broad.mit.edu	37	1	171080016	171080016	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171080016C>T	uc001ghi.2	+	6	816	c.705C>T	c.(703-705)CTC>CTT	p.L235L	FMO3_uc001ghh.2_Silent_p.L235L|FMO3_uc010pmb.1_Silent_p.L215L|FMO3_uc010pmc.1_Silent_p.L172L	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	235					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ACATGCTGCTCGTCACTCGAT	0.463													67	159					0	0	1	0	0
FMO3	2328	broad.mit.edu	37	1	171083178	171083178	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171083178G>A	uc001ghi.2	+	7	970	c.859G>A	c.(859-861)GAG>AAG	p.E287K	FMO3_uc001ghh.2_Missense_Mutation_p.E287K|FMO3_uc010pmb.1_Missense_Mutation_p.E267K|FMO3_uc010pmc.1_Missense_Mutation_p.E224K	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	287					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATTTAACGATGAGCTCCCAGC	0.413													22	48					0	0	1	0	0
FMO3	2328	broad.mit.edu	37	1	171086461	171086461	+	Missense_Mutation	SNP	C	T	T	rs61008738	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171086461C>T	uc001ghi.2	+	9	1589	c.1478C>T	c.(1477-1479)TCG>TTG	p.S493L	FMO3_uc001ghh.2_Missense_Mutation_p.S493L|FMO3_uc010pmb.1_Missense_Mutation_p.S473L|FMO3_uc010pmc.1_Missense_Mutation_p.S430L	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	493					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGGGACCGGTCGTTGAAACCC	0.517													28	49					0	0	1	0	0
FMO2	2327	broad.mit.edu	37	1	171154906	171154906	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171154906G>A	uc001ghk.1	+	2	171	c.54G>A	c.(52-54)CTG>CTA	p.L18L	FMO2_uc010pmd.1_Intron	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	18					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TAATTTCTCTGAAGTGCTGTG	0.463													57	160					0	0	1	0	0
FMO2	2327	broad.mit.edu	37	1	171168627	171168627	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171168627G>A	uc001ghk.1	+	5	744	c.627G>A	c.(625-627)CAG>CAA	p.Q209Q	FMO2_uc010pmd.1_Intron	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	209					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATGCTGCTCAGGTGTGATGCT	0.498													16	97					0	0	1	0	0
FMO2	2327	broad.mit.edu	37	1	171173052	171173052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171173052G>A	uc001ghk.1	+	6	793	c.676G>A	c.(676-678)GAA>AAA	p.E226K	FMO2_uc010pmd.1_Missense_Mutation_p.E6K	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	226					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCGTATCTCTGAAGATGGCTA	0.468													17	57					0	0	1	0	0
FMO2	2327	broad.mit.edu	37	1	171173122	171173122	+	Missense_Mutation	SNP	G	A	A	rs147029269	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171173122G>A	uc001ghk.1	+	6	863	c.746G>A	c.(745-747)CGA>CAA	p.R249Q	FMO2_uc010pmd.1_Missense_Mutation_p.R29Q	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	249					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTACTGCCACGAACAGCTGTA	0.453													22	61					0	0	1	0	0
FMO2	2327	broad.mit.edu	37	1	171174688	171174688	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171174688C>T	uc001ghk.1	+	7	1215	c.1098C>T	c.(1096-1098)CTC>CTT	p.L366L	FMO2_uc010pmd.1_Silent_p.L146L	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	366					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGTCAACCCTCGCGTGCATTG	0.448													24	83					0	0	1	0	0
FMO2	2327	broad.mit.edu	37	1	171178038	171178038	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171178038C>T	uc001ghk.1	+	9	1479	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F	FMO2_uc010pmd.1_Silent_p.F234F	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	454					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CTCTCTTGTTCAAAGATCCTA	0.502													102	205					0	0	1	0	0
FMO1	2326	broad.mit.edu	37	1	171227237	171227237	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171227237G>A	uc009wvz.2	+	2	147	c.11G>A	c.(10-12)CGA>CAA	p.R4Q	FMO1_uc010pme.1_Missense_Mutation_p.R4Q|FMO1_uc001ghl.2_Missense_Mutation_p.R4Q|FMO1_uc001ghm.2_Missense_Mutation_p.R4Q|FMO1_uc001ghn.2_Missense_Mutation_p.R4Q	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	4					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATGGCCAAGCGAGTTGCCATT	0.537													21	52					0	0	1	0	0
FMO1	2326	broad.mit.edu	37	1	171247961	171247961	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171247961G>A	uc009wvz.2	+	5	714	c.578G>A	c.(577-579)GGA>GAA	p.G193E	FMO1_uc010pme.1_Missense_Mutation_p.G130E|FMO1_uc001ghl.2_Missense_Mutation_p.G193E|FMO1_uc001ghm.2_Missense_Mutation_p.G193E|FMO1_uc001ghn.2_Missense_Mutation_p.G193E	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	193	NADP (Potential).				NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATTGGAATGGGAAATTCTGGC	0.433													12	54					0	0	1	0	0
FMO1	2326	broad.mit.edu	37	1	171251235	171251235	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171251235A>C	uc009wvz.2	+	7	1082	c.946A>C	c.(946-948)ACT>CCT	p.T316P	FMO1_uc010pme.1_Missense_Mutation_p.T253P|FMO1_uc001ghl.2_Missense_Mutation_p.T316P|FMO1_uc001ghm.2_Missense_Mutation_p.T316P|FMO1_uc001ghn.2_Missense_Mutation_p.T316P	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	316					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATTTAACAATACTTCAAAGGA	0.418													16	101					0	0	1	0	0
FMO1	2326	broad.mit.edu	37	1	171254565	171254565	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171254565G>A	uc009wvz.2	+	9	1617	c.1481G>A	c.(1480-1482)CGA>CAA	p.R494Q	FMO1_uc010pme.1_Missense_Mutation_p.R431Q|FMO1_uc001ghl.2_Missense_Mutation_p.R494Q|FMO1_uc001ghm.2_Missense_Mutation_p.R494Q|FMO1_uc001ghn.2_3'UTR	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	494					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CAGTGGGACCGAACATTCAAG	0.478													46	37					0	0	1	0	0
FMO4	2329	broad.mit.edu	37	1	171310668	171310668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171310668G>A	uc001gho.2	+	10	1584	c.1367G>A	c.(1366-1368)AGA>AAA	p.R456K		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	456					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					AAGGATCCCAGACTAGCTTGG	0.498													12	75					0	0	1	0	0
BAT2L2	23215	broad.mit.edu	37	1	171482205	171482205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171482205C>T	uc010pmg.1	+	3	444	c.178C>T	c.(178-180)CTC>TTC	p.L60F	BAT2L2_uc001ghq.1_Missense_Mutation_p.L62F|BAT2L2_uc001ghr.1_Missense_Mutation_p.L62F	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	60							protein C-terminus binding				0						ACCTGCTAACCTCCCAAGTCT	0.418													12	49					0	0	1	0	0
BAT2L2	23215	broad.mit.edu	37	1	171486848	171486848	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171486848C>T	uc010pmg.1	+	6	905	c.639C>T	c.(637-639)ATC>ATT	p.I213I	BAT2L2_uc001ghr.1_Silent_p.I215I	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	213							protein C-terminus binding				0						AAAATGATATCCTCAAAGTGG	0.498													15	36					0	0	1	0	0
BAT2L2	23215	broad.mit.edu	37	1	171535411	171535411	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171535411A>G	uc010pmg.1	+	21	6417	c.6151A>G	c.(6151-6153)ACT>GCT	p.T2051A	BAT2L2_uc010pmh.1_Missense_Mutation_p.T1028A|BAT2L2_uc010pmi.1_5'UTR	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2051							protein C-terminus binding				0						CGAAATTGGAACTGACACAAT	0.373													6	22					0	0	1	0	0
BAT2L2	23215	broad.mit.edu	37	1	171546720	171546720	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171546720C>T	uc010pmg.1	+	26	7363	c.7097C>T	c.(7096-7098)TCC>TTC	p.S2366F	BAT2L2_uc010pmh.1_Missense_Mutation_p.S1278F|BAT2L2_uc010pmi.1_Missense_Mutation_p.S203F|BAT2L2_uc010pmj.1_5'Flank	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2366	Gln-rich.						protein C-terminus binding				0						TGTATGCCTTCCCTTATTGCC	0.413													12	33					0	0	1	0	0
MYOC	4653	broad.mit.edu	37	1	171605290	171605290	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171605290G>A	uc001ghu.2	-	3	1312	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F	MYOC_uc010pmk.1_Silent_p.F372F	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	430	Olfactomedin-like.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CACAGATGATGAAGGCATTGG	0.507													47	131					0	0	1	0	0
MYOC	4653	broad.mit.edu	37	1	171605341	171605341	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171605341G>A	uc001ghu.2	-	3	1261	c.1239C>T	c.(1237-1239)CTC>CTT	p.L413L	MYOC_uc010pmk.1_Silent_p.L355L	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	413	Olfactomedin-like.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					AGGTTTGTTCGAGTTCCAGAT	0.522													55	121					0	0	1	0	0
MYOC	4653	broad.mit.edu	37	1	171605745	171605745	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:171605745G>A	uc001ghu.2	-	3	857	c.835C>T	c.(835-837)CCC>TCC	p.P279S	MYOC_uc010pmk.1_Missense_Mutation_p.P221S	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	279	Olfactomedin-like.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					TGGGTGTAGGGGTAGGTGGGC	0.537													46	62					0	0	1	0	0
DNM3	26052	broad.mit.edu	37	1	172001634	172001634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:172001634C>T	uc001gie.2	+	5	858	c.682C>T	c.(682-684)CGC>TGC	p.R228C	DNM3_uc001gid.3_Missense_Mutation_p.R228C|DNM3_uc009wwb.2_Missense_Mutation_p.R228C|DNM3_uc001gif.2_Missense_Mutation_p.R228C	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	228					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						GTTGCCTCTTCGCAGGGGTAA	0.393													26	73					0	0	1	0	0
DNM3	26052	broad.mit.edu	37	1	172007471	172007471	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:172007471C>T	uc001gie.2	+	7	1038	c.862C>T	c.(862-864)CAC>TAC	p.H288Y	DNM3_uc001gid.3_Missense_Mutation_p.H288Y|DNM3_uc009wwb.2_Missense_Mutation_p.H288Y|DNM3_uc001gif.2_Missense_Mutation_p.H288Y	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	288					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						ACTTACCAACCACATTCGGGA	0.378													17	53					0	0	1	0	0
MIR199A2	406977	broad.mit.edu	37	1	172113772	172113772	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:172113772C>T	hsa-mir-199a-2|MI0000281	-			c.13C>T			DNM3_uc009wwb.2_Intron|DNM3_uc001gie.2_Intron|DNM3_uc001gif.2_Intron																	0						AGCAGGATCTCCAGAAGCTTC	0.527													5	38					0	0	1	0	0
C1orf105	92346	broad.mit.edu	37	1	172425563	172425563	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:172425563G>A	uc001gik.2	+	4	403	c.207G>A	c.(205-207)AGG>AGA	p.R69R		NM_139240	NP_640333	O95561	CA105_HUMAN	hypothetical protein LOC92346	69										skin(1)	1						AGGCCAGGAGGAACCAGTGTG	0.532													51	142					0	0	1	0	0
FASLG	356	broad.mit.edu	37	1	172628472	172628472	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:172628472G>A	uc001gis.2	+	1	288	c.131G>A	c.(130-132)AGG>AAG	p.R44K	FASLG_uc001git.2_Missense_Mutation_p.R44K	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	44	Pro-rich.|Cytoplasmic (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						GGTCAAAGGAGGccaccacca	0.373													10	20					0	0	1	0	0
FASLG	356	broad.mit.edu	37	1	172634851	172634851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:172634851C>T	uc001gis.2	+	4	698	c.541C>T	c.(541-543)CTT>TTT	p.L181F	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	181	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						GAAGGGTGGCCTTGTGATCAA	0.458													14	95					0	0	1	0	0
TNFSF18	8995	broad.mit.edu	37	1	173010692	173010692	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173010692G>A	uc001giu.2	-	3	416	c.415C>T	c.(415-417)CTG>TTG	p.L139L		NM_005092	NP_005083	Q9UNG2	TNF18_HUMAN	tumor necrosis factor (ligand) superfamily,	139	Extracellular (Potential).				anti-apoptosis|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						TTTTTATACAGCCGCACCTCA	0.383													23	81					0	0	1	0	0
TNFSF18	8995	broad.mit.edu	37	1	173013100	173013100	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173013100C>T	uc001giu.2	-	2	233	c.232G>A	c.(232-234)GAG>AAG	p.E78K		NM_005092	NP_005083	Q9UNG2	TNF18_HUMAN	tumor necrosis factor (ligand) superfamily,	78	Extracellular (Potential).				anti-apoptosis|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						ATACAGGGCTCCTTAGCAGTC	0.353													39	78					0	0	1	0	0
TNFSF4	7292	broad.mit.edu	37	1	173176258	173176258	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173176258C>T	uc001giw.2	-	1	214	c.58G>A	c.(58-60)GAG>AAG	p.E20K	TNFSF4_uc001giv.2_5'Flank	NM_003326	NP_003317	P23510	TNFL4_HUMAN	tumor necrosis factor (ligand) superfamily,	20	Cytoplasmic (Potential).				acute inflammatory response|cellular response to lipopolysaccharide|cellular response to prostaglandin E stimulus|chemokine (C-C motif) ligand 11 production|defense response to nematode|interleukin-4-dependent isotype switching to IgE isotypes|memory T cell activation|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of regulatory T cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T-helper 1 cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of alpha-beta T cell proliferation|positive regulation of B cell activation|positive regulation of immunoglobulin mediated immune response|positive regulation of immunoglobulin secretion|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-13 production|positive regulation of interleukin-4 production|positive regulation of interleukin-6 production|positive regulation of memory T cell differentiation|positive regulation of T cell cytokine production|positive regulation of T-helper 2 cell differentiation|positive regulation of type 2 immune response|response to virus|signal transduction|T-helper 2 cell activation	cell surface|extracellular space|integral to plasma membrane	cytokine activity			central_nervous_system(1)	1						TTGTTCCTCTCGAATCTTGGC	0.512													23	70					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173503725	173503725	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173503725C>T	uc001giz.2	-	16	2295	c.1872G>A	c.(1870-1872)ATG>ATA	p.M624I	SLC9A11_uc009wwe.2_Missense_Mutation_p.M182I|SLC9A11_uc010pmq.1_Intron	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	624	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						GATGTATTATCATAGGATAAA	0.259													8	79					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173517593	173517593	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173517593C>T	uc001giz.2	-	12	1819	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	SLC9A11_uc009wwe.2_Missense_Mutation_p.E24K|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	466					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AAAATTTTTTCTGTTTTAAAT	0.348													22	60					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173542416	173542416	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173542416G>A	uc001giz.2	-	9	1374	c.951C>T	c.(949-951)TTC>TTT	p.F317F	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	317	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						CAATGCCAAAGAAAGCATATA	0.284													22	41					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173552675	173552676	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173552675_173552676CC>TT	uc001giz.2	-	6	1032_1033	c.609_610GG>AA	c.(607-612)CGGGGC>CGAAGC	p.G204S	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	204					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						ATTCTGTTGCCCCGAAAATTTC	0.277													28	81					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173556803	173556803	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173556803C>T	uc001giz.2	-	5	946	c.523_splice	c.e5+1	p.G175_splice	SLC9A11_uc010pmq.1_Splice_Site	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11						sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						ATGTGACATACCAATAGTTTT	0.318													24	59					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173556856	173556856	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173556856G>A	uc001giz.2	-	5	894	c.471C>T	c.(469-471)ATC>ATT	p.I157I	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	157					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TGCCAAGGGTGATGCTAAAGA	0.323													19	81					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173569281	173569281	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173569281C>T	uc001giz.2	-	3	626	c.203G>A	c.(202-204)GGA>GAA	p.G68E	SLC9A11_uc010pmq.1_Intron	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	68	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						GGCCATGTGTCCTATCACGAA	0.313													9	74					0	0	1	0	0
ANKRD45	339416	broad.mit.edu	37	1	173596232	173596232	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173596232C>T	uc001gja.1	-	4	624	c.563G>A	c.(562-564)GGA>GAA	p.G188E		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	204											0						TTTCCCTGATCCCTTTTCTGT	0.358													31	114					0	0	1	0	0
ANKRD45	339416	broad.mit.edu	37	1	173628328	173628328	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173628328C>T	uc001gja.1	-	2	291	c.230G>A	c.(229-231)GGG>GAG	p.G77E	ANKRD45_uc001gjb.3_Missense_Mutation_p.G77E	NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	93	ANK 1.										0						CAAATTTCTCCCAACGATGTC	0.443													42	110					0	0	1	0	0
ANKRD45	339416	broad.mit.edu	37	1	173628377	173628377	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173628377G>A	uc001gja.1	-	2	242	c.181C>T	c.(181-183)CCT>TCT	p.P61S	ANKRD45_uc001gjb.3_Missense_Mutation_p.P61S	NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	77											0						TCATGATGAGGATTCTCAGGA	0.433													24	50					0	0	1	0	0
ANKRD45	339416	broad.mit.edu	37	1	173628411	173628411	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173628411C>T	uc001gja.1	-	2	208	c.147G>A	c.(145-147)GAG>GAA	p.E49E	ANKRD45_uc001gjb.3_Silent_p.E49E	NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	65											0						TCTGCAAACCCTCTACATCCC	0.363													20	34					0	0	1	0	0
ANKRD45	339416	broad.mit.edu	37	1	173628477	173628478	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173628477_173628478GG>AA	uc001gja.1	-	2	141_142	c.80_81CC>TT	c.(79-81)GCC>GTT	p.A27V	ANKRD45_uc001gjb.3_Missense_Mutation_p.A27V	NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	43											0						ctggttcttgggcttcttcttc	0.351													9	22					0	0	1	0	0
SERPINC1	462	broad.mit.edu	37	1	173873191	173873191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173873191C>T	uc001gjt.2	-	7	1350	c.1231G>A	c.(1231-1233)GGC>AGC	p.G411S		NM_000488	NP_000479	P01008	ANT3_HUMAN	serpin peptidase inhibitor, clade C, member 1	411					blood coagulation|regulation of proteolysis	extracellular space|plasma membrane	heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(1)	1					Enoxaparin(DB01225)|Fondaparinux sodium(DB00569)|Heparin(DB01109)	GCTTCACTGCCTTCTTCATTT	0.468													19	70					0	0	1	0	0
SERPINC1	462	broad.mit.edu	37	1	173883916	173883916	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173883916C>T	uc001gjt.2	-	2	302	c.183G>A	c.(181-183)AAG>AAA	p.K61K		NM_000488	NP_000479	P01008	ANT3_HUMAN	serpin peptidase inhibitor, clade C, member 1	61					blood coagulation|regulation of proteolysis	extracellular space|plasma membrane	heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(1)	1					Enoxaparin(DB01225)|Fondaparinux sodium(DB00569)|Heparin(DB01109)	CCTCAGTTGCCTTCTTCTCCG	0.582											OREG0013990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	65	166					0	0	1	0	0
RC3H1	149041	broad.mit.edu	37	1	173915704	173915704	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173915704G>A	uc001gju.3	-	16	2958	c.2871C>T	c.(2869-2871)CCC>CCT	p.P957P	RC3H1_uc010pms.1_Silent_p.P957P|RC3H1_uc001gjv.2_Silent_p.P957P|RC3H1_uc010pmt.1_Silent_p.P957P	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	957					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CAGATGGAAGGGGTTTTCCAT	0.413													20	94					0	0	1	0	0
RC3H1	149041	broad.mit.edu	37	1	173934254	173934254	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:173934254G>A	uc001gju.3	-	9	1426	c.1339C>T	c.(1339-1341)CGT>TGT	p.R447C	RC3H1_uc010pms.1_Missense_Mutation_p.R447C|RC3H1_uc001gjv.2_Missense_Mutation_p.R447C|RC3H1_uc010pmt.1_Missense_Mutation_p.R447C	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	447					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TTCATTTTACGAAATCTATAT	0.368													18	56					0	0	1	0	0
GPR52	9293	broad.mit.edu	37	1	174417609	174417609	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:174417609C>T	uc001gka.1	+	1	398	c.360C>T	c.(358-360)ATC>ATT	p.I120I	RABGAP1L_uc001gjw.2_Intron|RABGAP1L_uc001gjx.2_Intron|RABGAP1L_uc001gjy.2_Intron|RABGAP1L_uc001gjz.2_Intron|uc010pmu.1_RNA	NM_005684	NP_005675	Q9Y2T5	GPR52_HUMAN	G protein-coupled receptor 52	120	Helical; Name=3; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1						TTGGATATATCATCTCAGTTC	0.428													84	195					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175046766	175046766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175046766C>T	uc001gkl.1	+	2	325	c.212C>T	c.(211-213)TCG>TTG	p.S71L	TNN_uc010pmx.1_Missense_Mutation_p.S71L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	71					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GATGGGGCTTCGCTCTTGGCC	0.587													11	31					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175046902	175046902	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175046902G>A	uc001gkl.1	+	2	461	c.348G>A	c.(346-348)GAG>GAA	p.E116E	TNN_uc010pmx.1_Silent_p.E116E	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	116					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGAAGCTGGAGGAAGAGATGG	0.527													12	37					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175048543	175048543	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175048543G>A	uc001gkl.1	+	3	597	c.484G>A	c.(484-486)GAG>AAG	p.E162K	TNN_uc010pmx.1_Missense_Mutation_p.E162K	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	162					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGAGGGCAGGGAGGGCCCCGC	0.711													15	7					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175048558	175048558	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175048558G>A	uc001gkl.1	+	3	612	c.499G>A	c.(499-501)GAG>AAG	p.E167K	TNN_uc010pmx.1_Missense_Mutation_p.E167K	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	167	EGF-like 1.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CCCCGCCTGCGAGCGGCTGGC	0.731													4	9					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175048623	175048623	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175048623C>T	uc001gkl.1	+	3	677	c.564C>T	c.(562-564)TGC>TGT	p.C188C	TNN_uc010pmx.1_Silent_p.C188C	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	188	EGF-like 1.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GCTGCCTGTGCCATGAGCCCT	0.746													5	8					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175049404	175049404	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175049404C>T	uc001gkl.1	+	4	1003	c.890C>T	c.(889-891)CCC>CTC	p.P297L	TNN_uc010pmx.1_Missense_Mutation_p.P297L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	297	Fibronectin type-III 1.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGCTACTACCCCCTGGGGAAG	0.577													9	83					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175063158	175063158	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175063158C>T	uc001gkl.1	+	7	1470	c.1357C>T	c.(1357-1359)CGA>TGA	p.R453*	TNN_uc010pmx.1_Nonsense_Mutation_p.R453*	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	453	Fibronectin type-III 3.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TGTCACTGATCGAGTGACTGA	0.433													15	48					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175063304	175063304	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175063304G>A	uc001gkl.1	+	7	1616	c.1503G>A	c.(1501-1503)CTG>CTA	p.L501L	TNN_uc010pmx.1_Silent_p.L501L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	501	Fibronectin type-III 3.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TGACGGGCCTGAAGCCAGGAG	0.547													18	34					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175063316	175063316	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175063316G>A	uc001gkl.1	+	7	1628	c.1515G>A	c.(1513-1515)GAG>GAA	p.E505E	TNN_uc010pmx.1_Silent_p.E505E	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	505	Fibronectin type-III 3.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGCCAGGAGAGGCATACAAGG	0.542													15	44					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175087870	175087870	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175087870G>A	uc001gkl.1	+	11	2673	c.2560G>A	c.(2560-2562)GGC>AGC	p.G854S		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	854	Fibronectin type-III 7.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TGTCCTGACGGGCCTGAGGCC	0.607													28	91					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175097744	175097744	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175097744C>T	uc001gkl.1	+	15	3305	c.3192C>T	c.(3190-3192)TTC>TTT	p.F1064F		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1064	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GTGCCCGTTTCCCACACCCTT	0.537													31	80					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175105061	175105061	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175105061G>A	uc001gkl.1	+	16	3524	c.3411G>A	c.(3409-3411)ATG>ATA	p.M1137I		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1137	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GGGACCCCATGAAGGAGTTCT	0.542													32	73					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175299218	175299218	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175299218C>T	uc001gkp.1	-	19	3866	c.3785G>A	c.(3784-3786)GGC>GAC	p.G1262D	TNR_uc009wwu.1_Missense_Mutation_p.G1262D	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1262	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ACCCGCAGTGCCGTTGTAGCT	0.592													21	52					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175304863	175304863	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175304863C>T	uc001gkp.1	-	18	3696	c.3615G>A	c.(3613-3615)GAG>GAA	p.E1205E	TNR_uc009wwu.1_Silent_p.E1205E	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1205	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGAACTCATCCTCCACGTTCC	0.443													10	121					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175306769	175306769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175306769C>T	uc001gkp.1	-	17	3510	c.3429G>A	c.(3427-3429)ATG>ATA	p.M1143I	TNR_uc009wwu.1_Missense_Mutation_p.M1143I	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1143	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TGTCTCCATTCATCAAATGCT	0.507													18	33					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175334294	175334294	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175334294C>T	uc001gkp.1	-	10	2520	c.2439G>A	c.(2437-2439)GAG>GAA	p.E813E	TNR_uc009wwu.1_Silent_p.E813E	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	813	Fibronectin type-III 6.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TCTCTTCCTCCTCATCCCTGG	0.527													25	46					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175334383	175334383	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175334383G>A	uc001gkp.1	-	10	2431	c.2350C>T	c.(2350-2352)CAT>TAT	p.H784Y	TNR_uc009wwu.1_Missense_Mutation_p.H784Y	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	784	Fibronectin type-III 6.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GAGGTCACATGAGAAAAGTGC	0.507													16	32					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175355212	175355212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175355212C>T	uc001gkp.1	-	6	1814	c.1733G>A	c.(1732-1734)CGA>CAA	p.R578Q	TNR_uc009wwu.1_Missense_Mutation_p.R578Q	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	578	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GTTGGTCCCTCGGACGGCACT	0.637													40	104					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175360448	175360448	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175360448G>A	uc001gkp.1	-	5	1564	c.1483C>T	c.(1483-1485)CCT>TCT	p.P495S	TNR_uc009wwu.1_Missense_Mutation_p.P495S	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	495	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GCCGAGGTAGGGGGGCTGCGG	0.557													31	62					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175365684	175365684	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175365684G>A	uc001gkp.1	-	3	1317	c.1236C>T	c.(1234-1236)GCC>GCT	p.A412A	TNR_uc009wwu.1_Silent_p.A412A|TNR_uc010pmz.1_3'UTR	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	412	Fibronectin type-III 1.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ACGTACGGGTGGCCACCTTGG	0.502													23	60					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175372323	175372323	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:175372323C>T	uc001gkp.1	-	2	1010	c.929G>A	c.(928-930)GGG>GAG	p.G310E	TNR_uc009wwu.1_Missense_Mutation_p.G310E|TNR_uc010pmz.1_Missense_Mutation_p.G310E	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	310	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GACGCAGAGCCCCTCCTCACA	0.612													15	58					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525760	176525760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176525760G>A	uc001gkz.2	+	2	1466	c.302G>A	c.(301-303)GGA>GAA	p.G101E	PAPPA2_uc001gky.1_Missense_Mutation_p.G101E|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	101					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GACACTGAAGGAAATGCTGTG	0.567													70	159					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176526272	176526272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176526272C>T	uc001gkz.2	+	2	1978	c.814C>T	c.(814-816)CTG>TTG	p.L272L	PAPPA2_uc001gky.1_Silent_p.L272L|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	272					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCGGGAGCGGCTGCTGCTGCG	0.567													12	38					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176526305	176526305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176526305C>T	uc001gkz.2	+	2	2011	c.847C>T	c.(847-849)CCC>TCC	p.P283S	PAPPA2_uc001gky.1_Missense_Mutation_p.P283S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	283					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGCTGAGATTCCCCGGGAGGC	0.567													11	26					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176563735	176563735	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176563735G>A	uc001gkz.2	+	3	2159	c.995G>A	c.(994-996)GGA>GAA	p.G332E	PAPPA2_uc001gky.1_Missense_Mutation_p.G332E|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	332					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AAGGACAAGGGAAAGCGGGAT	0.562													15	62					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176563857	176563857	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176563857G>A	uc001gkz.2	+	3	2281	c.1117G>A	c.(1117-1119)GGA>AGA	p.G373R	PAPPA2_uc001gky.1_Missense_Mutation_p.G373R|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	373					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CACTTACGATGGACGGCACAT	0.572													15	57					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176563900	176563900	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176563900G>A	uc001gkz.2	+	3	2324	c.1160G>A	c.(1159-1161)AGC>AAC	p.S387N	PAPPA2_uc001gky.1_Missense_Mutation_p.S387N|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	387					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CAGGTGGCTAGCAGTCTAGAC	0.577													25	62					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564036	176564037	+	Silent	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176564036_176564037CC>TT	uc001gkz.2	+	3	2460_2461	c.1296_1297CC>TT	c.(1294-1299)GCCCTG>GCTTTG	p.432_433AL>AL	PAPPA2_uc001gky.1_Silent_p.432_433AL>AL|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	432_433					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGTCGACCGCCCTGCCACAAAG	0.559													29	83					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564328	176564328	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176564328G>A	uc001gkz.2	+	3	2752	c.1588G>A	c.(1588-1590)GTG>ATG	p.V530M	PAPPA2_uc001gky.1_Missense_Mutation_p.V530M|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	530	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTACCAGGTGGTGAACATCTG	0.527													6	39					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564372	176564372	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176564372G>A	uc001gkz.2	+	3	2796	c.1632G>A	c.(1630-1632)GAG>GAA	p.E544E	PAPPA2_uc001gky.1_Silent_p.E544E|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	544	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TTGTGAGTGAGGAGCAGATTC	0.562													10	39					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564418	176564418	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176564418C>T	uc001gkz.2	+	3	2842	c.1678C>T	c.(1678-1680)CGC>TGC	p.R560C	PAPPA2_uc001gky.1_Missense_Mutation_p.R560C|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	560	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGCCTTCAGCCGCTACAACAT	0.557													14	63					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176659540	176659540	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176659540C>T	uc001gkz.2	+	5	3569	c.2405C>T	c.(2404-2406)CCG>CTG	p.P802L	PAPPA2_uc001gky.1_Missense_Mutation_p.P802L|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	802					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCAGGGGCTCCGTTCACCAAC	0.567													12	103					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668411	176668411	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176668411C>T	uc001gkz.2	+	8	4086	c.2922C>T	c.(2920-2922)TTC>TTT	p.F974F	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	974					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTTCCTTCTTCATGGAGTCCT	0.562													80	180					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668568	176668568	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176668568G>A	uc001gkz.2	+	8	4243	c.3079G>A	c.(3079-3081)GAG>AAG	p.E1027K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1027					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CACCTTTGATGAGAGGATAGA	0.562													59	95					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176671814	176671814	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176671814C>T	uc001gkz.2	+	9	4472	c.3308C>T	c.(3307-3309)TCG>TTG	p.S1103L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1103					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGAGAAGCTTCGCCTCCTCTG	0.413													24	80					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176675568	176675568	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176675568G>A	uc001gkz.2	+	10	4603	c.3439G>A	c.(3439-3441)GAA>AAA	p.E1147K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1147					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGAGCTGGAGGAAGGTTTCAA	0.413													16	48					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176708836	176708836	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176708836G>A	uc001gkz.2	+	13	5037	c.3873G>A	c.(3871-3873)GAG>GAA	p.E1291E	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1291					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TTCCCGGAGAGCATCAGCAGC	0.458													36	64					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176708876	176708876	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176708876C>T	uc001gkz.2	+	13	5077	c.3913C>T	c.(3913-3915)CGT>TGT	p.R1305C	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1305					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GACCGATGTCCGTGGAAGCAA	0.493													25	59					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176738894	176738894	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176738894C>T	uc001gkz.2	+	16	5639	c.4475C>T	c.(4474-4476)TCT>TTT	p.S1492F	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1492	Sushi 2.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGCTCAATCTCTTGTGTCCCA	0.522													52	106					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176740250	176740250	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176740250C>T	uc001gkz.2	+	17	5813	c.4649C>T	c.(4648-4650)ACC>ATC	p.T1550I	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1550	Sushi 3.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GACGTGGGCACCATCTGCAAA	0.488													24	50					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176760486	176760486	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176760486C>T	uc001gkz.2	+	19	6052	c.4888C>T	c.(4888-4890)CCC>TCC	p.P1630S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1630	Sushi 4.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ATTCTAGCTTCCCATCCTCTG	0.408													13	49					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176762775	176762775	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176762775G>A	uc001gkz.2	+	20	6264	c.5100G>A	c.(5098-5100)CTG>CTA	p.L1700L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1700	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTGACACTCTGGAGCACTGGA	0.473													24	66					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176809404	176809404	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176809404G>A	uc001gkz.2	+	22	6462	c.5298G>A	c.(5296-5298)AAG>AAA	p.K1766K	PAPPA2_uc009www.2_RNA|uc001gla.1_5'Flank	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1766					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TCTCCTCCAAGAAGGTGAGTG	0.522													25	91					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176833426	176833426	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176833426C>T	uc001glc.2	-	23	4091	c.3879G>A	c.(3877-3879)GAG>GAA	p.E1293E	ASTN1_uc001glb.1_Intron	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1301					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GGTGCTAGATCTCTTTGCTGT	0.517													60	131					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176853515	176853515	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176853515C>T	uc001glc.2	-	19	3398	c.3186G>A	c.(3184-3186)GAG>GAA	p.E1062E	ASTN1_uc001glb.1_Silent_p.E1062E|ASTN1_uc001gld.1_Silent_p.E1062E	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1070	Fibronectin type-III 1.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CAGTGACTTTCTCTTGACGGA	0.507													30	75					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176905489	176905489	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176905489C>T	uc001glc.2	-	15	2607	c.2395G>A	c.(2395-2397)GAA>AAA	p.E799K	ASTN1_uc001glb.1_Missense_Mutation_p.E799K|ASTN1_uc001gld.1_Missense_Mutation_p.E799K|ASTN1_uc009wwx.1_Missense_Mutation_p.E799K	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	807					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CCAGACACTTCACTGAAGTTC	0.488													34	50					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176915071	176915071	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176915071C>T	uc001glc.2	-	13	2452	c.2240G>A	c.(2239-2241)GGA>GAA	p.G747E	ASTN1_uc001glb.1_Missense_Mutation_p.G747E|ASTN1_uc001gld.1_Missense_Mutation_p.G747E|ASTN1_uc009wwx.1_Missense_Mutation_p.G747E	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	755					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CCTGAATGTTCCTTTCAGCAC	0.438													61	133					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176915162	176915162	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176915162C>T	uc001glc.2	-	13	2361	c.2149G>A	c.(2149-2151)GAG>AAG	p.E717K	ASTN1_uc001glb.1_Missense_Mutation_p.E717K|ASTN1_uc001gld.1_Missense_Mutation_p.E717K|ASTN1_uc009wwx.1_Missense_Mutation_p.E717K	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	725					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						ATGGGAAGCTCCCTGCTTTCC	0.532													31	90					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176934326	176934326	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176934326C>T	uc001glc.2	-	9	1783	c.1571G>A	c.(1570-1572)GGA>GAA	p.G524E	ASTN1_uc001glb.1_Missense_Mutation_p.G524E|ASTN1_uc001gld.1_Missense_Mutation_p.G524E|ASTN1_uc009wwx.1_Missense_Mutation_p.G524E	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	532					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GGGCTGCTCTCCCAAAACCAG	0.378													33	95					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176992706	176992706	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:176992706C>T	uc001glc.2	-	7	1484	c.1272G>A	c.(1270-1272)GGG>GGA	p.G424G	ASTN1_uc001glb.1_Silent_p.G424G|ASTN1_uc001gld.1_Silent_p.G424G|ASTN1_uc009wwx.1_Silent_p.G424G|ASTN1_uc001gle.3_Intron	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	424					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TGAAGCGGCTCCCTGCAGGGT	0.552													5	26					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177225145	177225145	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:177225145G>A	uc001glf.2	+	3	672	c.360G>A	c.(358-360)CGG>CGA	p.R120R	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_5'Flank	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	120						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AGTTTATCCGGAACATTCGCC	0.483											OREG0014006	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	79					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177247706	177247706	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:177247706C>T	uc001glf.2	+	7	1332	c.1020C>T	c.(1018-1020)TTC>TTT	p.F340F	FAM5B_uc010pna.1_Silent_p.F90F|FAM5B_uc001glg.2_Silent_p.F235F	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	340						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CAGAAGAGTTCCAGGCCCTGC	0.587													37	275					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177247750	177247750	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:177247750C>T	uc001glf.2	+	7	1376	c.1064C>T	c.(1063-1065)TCC>TTC	p.S355F	FAM5B_uc010pna.1_Missense_Mutation_p.S105F|FAM5B_uc001glg.2_Missense_Mutation_p.S250F	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	355						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TTCCTGAACTCCACAGCTATC	0.562													71	236					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177247899	177247899	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:177247899C>T	uc001glf.2	+	7	1525	c.1213C>T	c.(1213-1215)CGC>TGC	p.R405C	FAM5B_uc010pna.1_Missense_Mutation_p.R155C|FAM5B_uc001glg.2_Missense_Mutation_p.R300C	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	405						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TCGCCAGCCTCGCTTCCGCCT	0.617													21	65					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177249597	177249597	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:177249597G>A	uc001glf.2	+	8	1597	c.1285G>A	c.(1285-1287)GAA>AAA	p.E429K	FAM5B_uc001glg.2_Missense_Mutation_p.E324K	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	429						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTACTGTGGGGAAAGCACCTT	0.542													32	81					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177249620	177249620	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:177249620C>T	uc001glf.2	+	8	1620	c.1308C>T	c.(1306-1308)TTC>TTT	p.F436F	FAM5B_uc001glg.2_Silent_p.F331F	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	436						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTGGCACTTTCCTGGAACAGA	0.577													27	74					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177249815	177249815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:177249815C>T	uc001glf.2	+	8	1815	c.1503C>T	c.(1501-1503)AAC>AAT	p.N501N	FAM5B_uc001glg.2_Silent_p.N396N	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	501						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CCCTGGAAAACTTTCTTGGGC	0.577													15	73					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177250629	177250629	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:177250629C>T	uc001glf.2	+	8	2629	c.2317C>T	c.(2317-2319)CCT>TCT	p.P773S	FAM5B_uc001glg.2_Missense_Mutation_p.P668S	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	773						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCTGCCAAACCCTGTGGAATA	0.532													26	87					0	0	1	0	0
RASAL2	9462	broad.mit.edu	37	1	178423749	178423749	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:178423749C>T	uc001glr.2	+	10	1858	c.1733C>T	c.(1732-1734)TCC>TTC	p.S578F	RASAL2_uc001glq.2_Missense_Mutation_p.S726F|RASAL2_uc009wxc.2_Missense_Mutation_p.S92F	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	578					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						GTTTTGCATTCCTTACTGTGG	0.413													23	93					0	0	1	0	0
RASAL2	9462	broad.mit.edu	37	1	178442297	178442297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:178442297C>T	uc001glr.2	+	16	3468	c.3343C>T	c.(3343-3345)CGC>TGC	p.R1115C	RASAL2_uc001glq.2_Missense_Mutation_p.R1256C|RASAL2_uc009wxc.2_Missense_Mutation_p.P639L	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	1115					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						CATGCAGGTCCGCAATGGCAT	0.542													26	78					0	0	1	0	0
RALGPS2	55103	broad.mit.edu	37	1	178802677	178802677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:178802677C>T	uc001glz.2	+	8	937	c.599C>T	c.(598-600)CCC>CTC	p.P200L	RALGPS2_uc001gly.1_Missense_Mutation_p.P200L|RALGPS2_uc010pnb.1_Missense_Mutation_p.P200L	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	200	Ras-GEF.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						CCTTGCATTCCCTATTTAGGT	0.289													27	78					0	0	1	0	0
RALGPS2	55103	broad.mit.edu	37	1	178846735	178846735	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:178846735G>A	uc001glz.2	+	9	1048	c.710G>A	c.(709-711)CGA>CAA	p.R237Q	RALGPS2_uc001gly.1_Missense_Mutation_p.R237Q|RALGPS2_uc010pnb.1_Missense_Mutation_p.R237Q	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	237	Ras-GEF.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						AATATCCTTCGAATAATTTCT	0.333													13	46					0	0	1	0	0
RALGPS2	55103	broad.mit.edu	37	1	178854323	178854323	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:178854323G>A	uc001glz.2	+	12	1355	c.1017G>A	c.(1015-1017)AGG>AGA	p.R339R	RALGPS2_uc010pnb.1_Silent_p.R339R	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	339					small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						ATGGACATAGGAAGTGCCATA	0.408													12	70					0	0	1	0	0
ABL2	27	broad.mit.edu	37	1	179076997	179076997	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179076997G>A	uc001gmj.3	-	12	3692	c.3405C>T	c.(3403-3405)GCC>GCT	p.A1135A	ABL2_uc010pnf.1_Silent_p.A1032A|ABL2_uc010png.1_Silent_p.A1011A|ABL2_uc010pnh.1_Silent_p.A1114A|ABL2_uc001gmg.3_Silent_p.A1017A|ABL2_uc001gmi.3_Silent_p.A1120A|ABL2_uc001gmh.3_Silent_p.A1099A|ABL2_uc010pne.1_Silent_p.A996A	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	1135	F-actin-binding (By similarity).				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	CCTCTCGGAAGGCAAATTTGT	0.537			T	ETV6	AML								29	44					0	0	1	0	0
C1orf125	126859	broad.mit.edu	37	1	179414114	179414114	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179414114G>A	uc001gmo.2	+	16	1700	c.1573G>A	c.(1573-1575)GAG>AAG	p.E525K	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmn.1_Missense_Mutation_p.E313K|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E525K	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	525											0						GATCCTGAATGAGAAAAAAGA	0.383													27	81					0	0	1	0	0
C1orf125	126859	broad.mit.edu	37	1	179437688	179437688	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179437688G>A	uc001gmo.2	+	17	2036	c.1909G>A	c.(1909-1911)GAA>AAA	p.E637K	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_3'UTR|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E637K	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	637											0						GGAAATAGATGAAAAAATTAA	0.353													29	67					0	0	1	0	0
C1orf125	126859	broad.mit.edu	37	1	179503926	179503926	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179503926C>T	uc001gmo.2	+	25	2987	c.2860C>T	c.(2860-2862)CAT>TAT	p.H954Y	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.H880Y|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	954	Glu-rich.										0						TGAGAAACTTCATCATACCCT	0.299													36	107					0	0	1	0	0
C1orf125	126859	broad.mit.edu	37	1	179504001	179504001	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179504001G>A	uc001gmo.2	+	25	3062	c.2935G>A	c.(2935-2937)GAA>AAA	p.E979K	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E905K|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	979	Glu-rich.										0						agaagagaaagaaaatcaaga	0.219													8	71					0	0	1	0	0
NPHS2	7827	broad.mit.edu	37	1	179520386	179520386	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179520386C>T	uc001gmq.3	-	8	1159	c.1074G>A	c.(1072-1074)CAG>CAA	p.Q358Q	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmo.2_Intron|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_Intron|NPHS2_uc009wxi.2_Silent_p.Q290Q|C1orf125_uc001gmr.2_RNA	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	358	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						GGAGGCTTCCCTGAGTTCTGT	0.478													34	92					0	0	1	0	0
NPHS2	7827	broad.mit.edu	37	1	179533882	179533882	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179533882G>A	uc001gmq.3	-	2	406	c.321C>T	c.(319-321)CTC>CTT	p.L107L	NPHS2_uc009wxi.2_Silent_p.L107L	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	107					excretion	integral to plasma membrane	protein binding				0						GCAGGGAAATGAGGACAAGAA	0.413													22	53					0	0	1	0	0
NPHS2	7827	broad.mit.edu	37	1	179544834	179544834	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179544834C>T	uc001gmq.3	-	1	251	c.166G>A	c.(166-168)GAG>AAG	p.E56K	NPHS2_uc009wxi.2_Missense_Mutation_p.E56K	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	56	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						GCTCGGGGCTCCCCCGGGGTC	0.771													8	8					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	179556505	179556505	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179556505C>T	uc001gmt.2	-	1		c.50G>A								DQ571986																		CAAGCCATTCCACCGTCTGTT	0.527													10	71					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179561820	179561820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179561820G>A	uc001gnf.1	+	2	320	c.70G>A	c.(70-72)GAT>AAT	p.D24N	TDRD5_uc010pnp.1_Missense_Mutation_p.D24N|uc010pno.1_5'Flank	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	24	Lotus/OST-HTH 1.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TTCCACCAAAGATGGTTTGAG	0.483													16	146					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179561838	179561838	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179561838G>A	uc001gnf.1	+	2	338	c.88G>A	c.(88-90)GAG>AAG	p.E30K	TDRD5_uc010pnp.1_Missense_Mutation_p.E30K|uc010pno.1_5'Flank	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	30	Lotus/OST-HTH 1.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GAGCCCACAGGAGTTGGAGAA	0.483													41	126					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179562606	179562606	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179562606G>A	uc001gnf.1	+	3	494	c.244G>A	c.(244-246)GAA>AAA	p.E82K	TDRD5_uc010pnp.1_Missense_Mutation_p.E82K	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	82	Lotus/OST-HTH 1.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CATTCCAGATGAATCTACCAA	0.373													8	33					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179562850	179562850	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179562850G>A	uc001gnf.1	+	3	738	c.488G>A	c.(487-489)CGA>CAA	p.R163Q	TDRD5_uc010pnp.1_Missense_Mutation_p.R163Q	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	163	Lotus/OST-HTH 2.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						AGATTTGGACGATCATTCCAA	0.408													8	123					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179587780	179587780	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179587780G>A	uc001gnf.1	+	5	1128	c.878G>A	c.(877-879)GGA>GAA	p.G293E	TDRD5_uc010pnp.1_Missense_Mutation_p.G293E|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	293					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GGACCTGGAGGAACTATCAGT	0.308													30	83					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179603649	179603649	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179603649C>T	uc001gnf.1	+	8	1434	c.1184C>T	c.(1183-1185)TCA>TTA	p.S395L	TDRD5_uc010pnp.1_Missense_Mutation_p.S395L|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	395					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CCTAGAAATTCATTGTCTACT	0.388													46	116					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179604914	179604914	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179604914C>T	uc001gnf.1	+	9	1662	c.1412C>T	c.(1411-1413)TCC>TTC	p.S471F	TDRD5_uc010pnp.1_Missense_Mutation_p.S471F|TDRD5_uc001gnh.1_Missense_Mutation_p.S26F	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	471					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GACACCAGTTCCCTCATAGGG	0.453													21	70					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179604982	179604982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179604982G>A	uc001gnf.1	+	9	1730	c.1480G>A	c.(1480-1482)GAT>AAT	p.D494N	TDRD5_uc010pnp.1_Missense_Mutation_p.D494N|TDRD5_uc001gnh.1_Missense_Mutation_p.D49N	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	494					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding	p.D494D(1)		ovary(2)|skin(2)|central_nervous_system(1)	5						CTATAGCAGGGATTCGTCAGA	0.383													30	57					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179609144	179609144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179609144G>A	uc001gnf.1	+	10	1941	c.1691G>A	c.(1690-1692)GGA>GAA	p.G564E	TDRD5_uc010pnp.1_Missense_Mutation_p.G564E|TDRD5_uc001gnh.1_Missense_Mutation_p.G119E	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	564	Tudor.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CCAGACTTTGGAAATATTGGA	0.393													62	170					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179620142	179620142	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179620142C>T	uc001gnf.1	+	12	2191	c.1941C>T	c.(1939-1941)TTC>TTT	p.F647F	TDRD5_uc010pnp.1_Silent_p.F647F|TDRD5_uc001gnh.1_Silent_p.F202F	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	647					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						ATGTCTATTTCCATCATGTCT	0.383													50	123					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179621192	179621192	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179621192C>T	uc001gnf.1	+	13	2270	c.2020C>T	c.(2020-2022)CCT>TCT	p.P674S	TDRD5_uc010pnp.1_Missense_Mutation_p.P674S|TDRD5_uc001gnh.1_Missense_Mutation_p.P229S	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	674					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TGAGCTCAACCCTTTAGCTTT	0.398													9	100					0	0	1	0	0
FAM163A	148753	broad.mit.edu	37	1	179782989	179782989	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:179782989C>T	uc009wxj.2	+	6	628	c.169C>T	c.(169-171)CCC>TCC	p.P57S	FAM163A_uc001gnj.2_Missense_Mutation_p.P57S|FAM163A_uc009wxk.2_Missense_Mutation_p.P57S	NM_173509	NP_775780	Q96GL9	F163A_HUMAN	hypothetical protein LOC148753	57						integral to membrane				ovary(1)	1						TCCCACGCATCCCAGAGGCCC	0.662													23	60					0	0	1	0	0
CEP350	9857	broad.mit.edu	37	1	180064816	180064816	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:180064816G>A	uc001gnt.2	+	35	9053	c.8670G>A	c.(8668-8670)AAG>AAA	p.K2890K	CEP350_uc009wxl.2_Silent_p.K2889K|CEP350_uc001gnv.2_Silent_p.K1025K|CEP350_uc001gnw.1_Silent_p.K647K|CEP350_uc001gnx.1_Silent_p.K647K	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	2890						centrosome|nucleus|spindle				ovary(4)	4						AAAAAAATAAGGCAGAAGAAA	0.433													21	54					0	0	1	0	0
QSOX1	5768	broad.mit.edu	37	1	180166062	180166062	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:180166062C>A	uc001gnz.2	+	12	2209	c.2134C>A	c.(2134-2136)CTC>ATC	p.L712I	QSOX1_uc001gny.2_Intron|QSOX1_uc001goa.2_Intron|QSOX1_uc001goc.2_Intron|FLJ23867_uc001god.3_5'Flank	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	712	Helical; (Potential).				cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						GGACATCAGCCTCTGTGTGGG	0.647													22	42					1.64293e-13	1.65016e-13	1	1	0
KIAA1614	57710	broad.mit.edu	37	1	180885620	180885620	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:180885620G>A	uc001gok.2	+	2	448	c.381G>A	c.(379-381)GGG>GGA	p.G127G		NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	127										ovary(3)|skin(1)	4						GGAGAGCCGGGACTCCATCAG	0.597													10	143					0	0	1	0	0
MR1	3140	broad.mit.edu	37	1	181021631	181021631	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181021631C>T	uc001goq.1	+	4	870	c.865C>T	c.(865-867)CTT>TTT	p.L289F	MR1_uc001gor.1_Missense_Mutation_p.L244F|MR1_uc001gos.1_Intron|MR1_uc010pns.1_Intron	NM_001531	NP_001522	Q95460	HMR1_HUMAN	major histocompatibility complex, class	289	Extracellular (Potential).|Alpha-3.|Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|immune response	endoplasmic reticulum|extracellular region|integral to membrane|MHC class I protein complex	MHC class I receptor activity			skin(1)	1						CCACATGGTTCTTCAGGTCCC	0.582													19	37					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181480566	181480566	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181480566G>A	uc001gow.2	+	3	597	c.432G>A	c.(430-432)GTG>GTA	p.V144V	CACNA1E_uc009wxr.2_Silent_p.V51V|CACNA1E_uc009wxs.2_Silent_p.V51V	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	144	I.|Helical; Name=S2 of repeat I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCAAAATTGTGGCCCTGGGGT	0.488													77	172					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181546989	181546989	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181546989C>T	uc001gow.2	+	4	765	c.600C>T	c.(598-600)CTC>CTT	p.L200L	CACNA1E_uc009wxr.2_Silent_p.L107L|CACNA1E_uc009wxs.2_Silent_p.L107L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	200	Helical; Name=S4 of repeat I.|I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTTTGAAGCTCGTGTCAGGGA	0.537													8	10					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181549743	181549743	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181549743G>A	uc001gow.2	+	6	947	c.782G>A	c.(781-783)GGA>GAA	p.G261E	CACNA1E_uc009wxr.2_Missense_Mutation_p.G168E|CACNA1E_uc009wxs.2_Missense_Mutation_p.G168E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	261	I.|Extracellular (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ATTCTAGAAGGATTTGACCCC	0.507													50	135					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181620505	181620505	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181620505G>A	uc001gow.2	+	7	1148	c.983G>A	c.(982-984)TGG>TAG	p.W328*	CACNA1E_uc009wxr.2_Nonsense_Mutation_p.W235*|CACNA1E_uc009wxs.2_Nonsense_Mutation_p.W235*	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	328	I.|Helical; Name=S6 of repeat I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACCTGGAATTGGCTGTACTTC	0.428													28	84					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181680128	181680128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181680128G>A	uc001gow.2	+	8	1259	c.1094G>A	c.(1093-1095)AGG>AAG	p.R365K	CACNA1E_uc009wxs.2_Missense_Mutation_p.R272K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	365	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GAGAACCGAAGGGCTTTCATG	0.547													28	91					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181689353	181689353	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181689353C>T	uc001gow.2	+	14	1928	c.1763C>T	c.(1762-1764)TCC>TTC	p.S588F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S495F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	588	Cytoplasmic (Potential).|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TATTGGGCTTCCCTACGGAAT	0.473													21	45					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181689418	181689418	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181689418C>T	uc001gow.2	+	14	1993	c.1828C>T	c.(1828-1830)CTC>TTC	p.L610F	CACNA1E_uc009wxs.2_Missense_Mutation_p.L517F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	610	Helical; Name=S5 of repeat II.|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GCTTTTCCTCCTCTTCCTCTT	0.463													13	28					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181689429	181689429	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181689429C>T	uc001gow.2	+	14	2004	c.1839C>T	c.(1837-1839)TTC>TTT	p.F613F	CACNA1E_uc009wxs.2_Silent_p.F520F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	613	Helical; Name=S5 of repeat II.|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCTTCCTCTTCATCGTTGTCT	0.473													12	28					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181701992	181701992	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181701992C>T	uc001gow.2	+	20	2935	c.2770C>T	c.(2770-2772)CGC>TGC	p.R924C	CACNA1E_uc009wxs.2_Missense_Mutation_p.R812C|CACNA1E_uc001gox.1_Missense_Mutation_p.R150C|CACNA1E_uc009wxt.2_Missense_Mutation_p.R150C	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	924	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CAGCCGGCATCGCCGCGTCAG	0.647													34	116					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181702044	181702044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181702044C>T	uc001gow.2	+	20	2987	c.2822C>T	c.(2821-2823)TCT>TTT	p.S941F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S829F|CACNA1E_uc001gox.1_Missense_Mutation_p.S167F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S167F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	941	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CGGAGCAGGTCTGCCAGCCAG	0.632													38	91					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181702138	181702138	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181702138G>A	uc001gow.2	+	20	3081	c.2916G>A	c.(2914-2916)ACG>ACA	p.T972T	CACNA1E_uc009wxs.2_Silent_p.T860T|CACNA1E_uc001gox.1_Silent_p.T198T|CACNA1E_uc009wxt.2_Silent_p.T198T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	972	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGGAGCCAACGATCCAAGAAG	0.552													10	33					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181702859	181702859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181702859C>T	uc001gow.2	+	21	3400	c.3235C>T	c.(3235-3237)CCC>TCC	p.P1079S	CACNA1E_uc009wxs.2_Missense_Mutation_p.P967S|CACNA1E_uc001gox.1_Missense_Mutation_p.P305S|CACNA1E_uc009wxt.2_Missense_Mutation_p.P305S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1079	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CGACGTGGACCCCTTGGTGGA	0.627													10	39					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181705452	181705452	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181705452G>A	uc001gow.2	+	22	3469	c.3304G>A	c.(3304-3306)GCA>ACA	p.A1102T	CACNA1E_uc009wxs.2_Missense_Mutation_p.A990T|CACNA1E_uc001gox.1_Missense_Mutation_p.A328T|CACNA1E_uc009wxt.2_Missense_Mutation_p.A328T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1102	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTTGAAGGAGGCAGAGATCAG	0.383													9	13					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181708304	181708304	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181708304C>T	uc001gow.2	+	25	3799	c.3634C>T	c.(3634-3636)CTG>TTG	p.L1212L	CACNA1E_uc009wxs.2_Silent_p.L1100L|CACNA1E_uc001gox.1_Silent_p.L438L|CACNA1E_uc009wxt.2_Silent_p.L438L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1212	III.|Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGGCTTGATCCTGCAGGATGG	0.512													46	130					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181721295	181721295	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181721295G>A	uc001gow.2	+	27	3913	c.3748G>A	c.(3748-3750)GAC>AAC	p.D1250N	CACNA1E_uc009wxs.2_Missense_Mutation_p.D1138N|CACNA1E_uc001gox.1_Missense_Mutation_p.D476N|CACNA1E_uc009wxt.2_Missense_Mutation_p.D476N	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1250	III.|Extracellular (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CAAAGGACGGGACATCAAGAC	0.478													26	73					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181726163	181726163	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181726163C>T	uc001gow.2	+	30	4395	c.4230C>T	c.(4228-4230)TTC>TTT	p.F1410F	CACNA1E_uc009wxs.2_Silent_p.F1298F|CACNA1E_uc001gox.1_Silent_p.F636F|CACNA1E_uc009wxt.2_Silent_p.F636F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1410	III.|Helical; Name=S6 of repeat III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TTGTGGTCTTCCCCTTCTTCT	0.488													46	94					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181732562	181732562	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181732562C>T	uc001gow.2	+	34	4875	c.4710C>T	c.(4708-4710)TTC>TTT	p.F1570F	CACNA1E_uc009wxs.2_Silent_p.F1458F|CACNA1E_uc001gox.1_Silent_p.F796F|CACNA1E_uc009wxt.2_Silent_p.F796F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1570	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCAGTGGCTTCAATATGAGCT	0.433													7	79					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181732596	181732596	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181732596C>T	uc001gow.2	+	34	4909	c.4744C>T	c.(4744-4746)CGC>TGC	p.R1582C	CACNA1E_uc009wxs.2_Missense_Mutation_p.R1470C|CACNA1E_uc001gox.1_Missense_Mutation_p.R808C|CACNA1E_uc009wxt.2_Missense_Mutation_p.R808C	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1582	Helical; Name=S4 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCGAGCTGCCCGCCTCATAAA	0.468													26	44					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181745299	181745299	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181745299C>T	uc001gow.2	+	38	5367	c.5202C>T	c.(5200-5202)TCC>TCT	p.S1734S	CACNA1E_uc009wxs.2_Silent_p.S1622S|CACNA1E_uc001gox.1_Silent_p.S960S|CACNA1E_uc009wxt.2_Silent_p.S960S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1734	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GGGACTCCTCCATCCTGGGGC	0.607													71	157					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181752865	181752865	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181752865C>T	uc001gow.2	+	40	5580	c.5415C>T	c.(5413-5415)TTC>TTT	p.F1805F	CACNA1E_uc009wxs.2_Silent_p.F1693F|CACNA1E_uc009wxt.2_Silent_p.F1031F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1805	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CGGTCCACTTCACCTCCACAC	0.443													15	50					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181764142	181764142	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181764142C>T	uc001gow.2	+	45	6206	c.6041C>T	c.(6040-6042)TCC>TTC	p.S2014F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S1902F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1283F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2057	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TACCACTCCTCCTTGCGGCTG	0.542													10	41					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181764162	181764162	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:181764162C>T	uc001gow.2	+	45	6226	c.6061C>T	c.(6061-6063)CGC>TGC	p.R2021C	CACNA1E_uc009wxs.2_Missense_Mutation_p.R1909C|CACNA1E_uc009wxt.2_Missense_Mutation_p.R1290C	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2064	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTCAGCCCACCGCCTGAACTC	0.547													12	35					0	0	1	0	0
ZNF648	127665	broad.mit.edu	37	1	182026425	182026425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:182026425C>T	uc001goz.2	-	2	929	c.721G>A	c.(721-723)GAG>AAG	p.E241K		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	241					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCTCCGCCCTCGCGCCGGCCC	0.731													4	11					0	0	1	0	0
ZNF648	127665	broad.mit.edu	37	1	182026719	182026719	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:182026719C>T	uc001goz.2	-	2	635	c.427G>A	c.(427-429)GAC>AAC	p.D143N		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	143					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGTAGTCGGTCCCCAAGAGGT	0.572													25	65					0	0	1	0	0
ZNF648	127665	broad.mit.edu	37	1	182026917	182026917	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:182026917C>T	uc001goz.2	-	2	437	c.229G>A	c.(229-231)GAG>AAG	p.E77K		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	77					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTCTCTTCCTCTTTGCCCAGT	0.557													19	53					0	0	1	0	0
TEDDM1	127670	broad.mit.edu	37	1	182368876	182368876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:182368876G>A	uc001gpe.2	-	1	876	c.745C>T	c.(745-747)CTC>TTC	p.L249F		NM_172000	NP_741997	Q5T9Z0	TEDM1_HUMAN	putative membrane protein HE9	249						integral to membrane				ovary(2)	2						AACTTGTAGAGGGGTCCTGGA	0.517													32	55					0	0	1	0	0
RNASEL	6041	broad.mit.edu	37	1	182555890	182555890	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:182555890C>T	uc001gpj.1	-	1	219	c.52G>A	c.(52-54)GGT>AGT	p.G18S	RNASEL_uc009wxz.1_Missense_Mutation_p.G18S|RNASEL_uc001gpk.2_Missense_Mutation_p.G18S|RNASEL_uc009wya.1_Missense_Mutation_p.G18S	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	18					mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						GCCCTTCTACCGCTGGAGGAC	0.498									Hereditary_Prostate_Cancer				17	149					0	0	1	0	0
DHX9	1660	broad.mit.edu	37	1	182822450	182822450	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:182822450C>T	uc001gpr.2	+	5	537	c.374C>T	c.(373-375)TCT>TTT	p.S125F	DHX9_uc001gps.2_5'UTR	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	125	Interaction with CREBBP.				CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						GAAAATAATTCTGAGGTAGGG	0.353													28	75					0	0	1	0	0
DHX9	1660	broad.mit.edu	37	1	182852338	182852338	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:182852338C>T	uc001gpr.2	+	25	3142	c.2979C>T	c.(2977-2979)TCC>TCT	p.S993S	DHX9_uc001gps.2_Silent_p.S779S|DHX9_uc001gpt.2_Silent_p.S272S|DHX9_uc009wyd.2_5'UTR	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	993					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						TTGTTATCTCCCTCCTGGCCT	0.398													38	113					0	0	1	0	0
LAMC1	3915	broad.mit.edu	37	1	183096487	183096487	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183096487C>T	uc001gpy.3	+	17	3328	c.3071C>T	c.(3070-3072)TCT>TTT	p.S1024F		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	1024	Laminin EGF-like 11.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TACAATCGGTCTTGGCCTGGC	0.408													29	70					0	0	1	0	0
LAMC2	3918	broad.mit.edu	37	1	183191281	183191281	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183191281C>T	uc001gqa.2	+	6	1012	c.698C>T	c.(697-699)TCA>TTA	p.S233L	LAMC2_uc001gpz.3_Missense_Mutation_p.S233L|LAMC2_uc010poa.1_5'UTR	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	233	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						CTCCAATGGTCACAGCGCCAT	0.488													34	115					0	0	1	0	0
LAMC2	3918	broad.mit.edu	37	1	183196718	183196718	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183196718G>A	uc001gqa.2	+	10	1668	c.1354G>A	c.(1354-1356)GAT>AAT	p.D452N	LAMC2_uc001gpz.3_Missense_Mutation_p.D452N|LAMC2_uc010poa.1_Missense_Mutation_p.D152N	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	452	Laminin EGF-like 5.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						TTTCTACAACGATCCGCACGA	0.557													61	141					0	0	1	0	0
LAMC2	3918	broad.mit.edu	37	1	183197559	183197559	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183197559G>A	uc001gqa.2	+	11	1833	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	LAMC2_uc001gpz.3_Missense_Mutation_p.E507K|LAMC2_uc010poa.1_Missense_Mutation_p.E207K	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	507	Laminin EGF-like 6.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						CCCCTTTGGTGAACATGGCCC	0.557											OREG0014041	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	68					0	0	1	0	0
NMNAT2	23057	broad.mit.edu	37	1	183230174	183230174	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183230174T>C	uc001gqc.1	-	10	1119	c.784A>G	c.(784-786)AAC>GAC	p.N262D	NMNAT2_uc009wye.1_RNA|NMNAT2_uc001gqb.1_Missense_Mutation_p.N257D	NM_015039	NP_055854	Q9BZQ4	NMNA2_HUMAN	nicotinamide mononucleotide adenylyltransferase	262					water-soluble vitamin metabolic process	Golgi membrane|nucleus	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity			skin(1)	1						atgggatggttgatgtcatcc	0.269													41	94					0	0	1	0	0
SMG7	9887	broad.mit.edu	37	1	183498122	183498122	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183498122C>T	uc001gqg.2	+	7	774	c.652C>T	c.(652-654)CCT>TCT	p.P218S	SMG7_uc010pob.1_Missense_Mutation_p.P247S|SMG7_uc001gqf.2_Missense_Mutation_p.P218S|SMG7_uc001gqh.2_Missense_Mutation_p.P218S|SMG7_uc001gqi.2_Missense_Mutation_p.P176S|SMG7_uc010poc.1_Missense_Mutation_p.P176S	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	218	TPR 2.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TGTGAAGTTCCCTTTCCCAGC	0.418													37	104					0	0	1	0	0
RGL1	23179	broad.mit.edu	37	1	183711395	183711395	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183711395C>T	uc001gqm.2	+	2	564	c.103C>T	c.(103-105)CGA>TGA	p.R35*	RGL1_uc010pof.1_5'UTR|RGL1_uc010pog.1_Nonsense_Mutation_p.R35*|RGL1_uc010poh.1_Nonsense_Mutation_p.R35*	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	Error:Variant_position_missing_in_Q9NZL6_after_alignment					cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						AGATCATGTTCGAATATGGGA	0.423													32	132					0	0	1	0	0
RGL1	23179	broad.mit.edu	37	1	183895291	183895291	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183895291G>A	uc001gqo.2	+	18	2329	c.2172G>A	c.(2170-2172)GTG>GTA	p.V724V	RGL1_uc001gqm.2_Silent_p.V759V|RGL1_uc010pog.1_Silent_p.V722V|RGL1_uc010poh.1_Silent_p.V722V|RGL1_uc010poi.1_Silent_p.V695V	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	724	Ras-associating.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						ACAGCCAAGTGAACTTTGACT	0.453													45	124					0	0	1	0	0
GLT25D2	23127	broad.mit.edu	37	1	183913377	183913377	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183913377C>T	uc001gqr.2	-	10	1722	c.1350G>A	c.(1348-1350)ATG>ATA	p.M450I	GLT25D2_uc010poj.1_Missense_Mutation_p.M450I|GLT25D2_uc001gqp.2_Missense_Mutation_p.M58I|GLT25D2_uc001gqq.2_Missense_Mutation_p.M187I|GLT25D2_uc001gqs.2_Missense_Mutation_p.M330I	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	450					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						CCATCAGCTTCATCAGCTTCT	0.453													27	85					0	0	1	0	0
GLT25D2	23127	broad.mit.edu	37	1	183944265	183944265	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:183944265C>T	uc001gqr.2	-	3	830	c.458G>A	c.(457-459)CGA>CAA	p.R153Q	GLT25D2_uc010poj.1_Missense_Mutation_p.R153Q|GLT25D2_uc001gqs.2_Missense_Mutation_p.R33Q	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	153					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						CCTCGCAGTTCGAAGGGCTGC	0.423													32	86					0	0	1	0	0
FAM129A	116496	broad.mit.edu	37	1	184765166	184765166	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:184765166C>T	uc001gra.2	-	14	1926	c.1732G>A	c.(1732-1734)GAA>AAA	p.E578K	FAM129A_uc001grb.1_Missense_Mutation_p.E341K	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	578					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						GACACACTTTCACTGGGCAAG	0.463													24	97					0	0	1	0	0
FAM129A	116496	broad.mit.edu	37	1	184792440	184792440	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:184792440C>T	uc001gra.2	-	8	1040	c.846G>A	c.(844-846)CTG>CTA	p.L282L	FAM129A_uc001grb.1_Silent_p.L45L|FAM129A_uc009wyh.1_Silent_p.L110L|FAM129A_uc009wyi.1_Silent_p.L80L	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	282					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						GATGCTGAACCAGGGTGTAGG	0.507													19	51					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	185902943	185902943	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:185902943C>T	uc001grq.1	+	11	2044	c.1815C>T	c.(1813-1815)TTC>TTT	p.F605F		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	605	Ig-like C2-type 2.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CTTCAGTTTTCCTCACAGTGC	0.398													50	186					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186008003	186008003	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186008003C>T	uc001grq.1	+	38	6123	c.5894C>T	c.(5893-5895)ACC>ATC	p.T1965I		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1965	Ig-like C2-type 17.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TCAGGTTCCACCAGCATGACT	0.368													50	123					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186022189	186022189	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186022189T>A	uc001grq.1	+	43	6912	c.6683T>A	c.(6682-6684)CTC>CAC	p.L2228H		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2228	Ig-like C2-type 20.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCCCCAAATCTCATCTGGAAG	0.318													48	75					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186026368	186026368	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186026368C>T	uc001grq.1	+	46	7376	c.7147C>T	c.(7147-7149)CCT>TCT	p.P2383S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2383					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TCTTACAGCTCCTCCAAGCAT	0.368													19	49					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186045650	186045650	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186045650C>T	uc001grq.1	+	54	8610	c.8381C>T	c.(8380-8382)CCC>CTC	p.P2794L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2794	Ig-like C2-type 26.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ATCAACAATCCCATTTCTCTT	0.433													33	67					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186059893	186059893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186059893C>T	uc001grq.1	+	64	9960	c.9731C>T	c.(9730-9732)CCT>CTT	p.P3244L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3244					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TCCAAAGTTCCTCCAAGTGTT	0.358													22	72					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186115002	186115002	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186115002C>T	uc001grq.1	+	93	14784	c.14555C>T	c.(14554-14556)CCC>CTC	p.P4852L	HMCN1_uc001grs.1_Missense_Mutation_p.P421L	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4852	TSP type-1 6.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GGTGGCCGTCCCTGTCCCGGA	0.488													16	63					0	0	1	0	0
PRG4	10216	broad.mit.edu	37	1	186266028	186266028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186266028C>T	uc001gru.3	+	2	72	c.21C>T	c.(19-21)CCC>CCT	p.P7P	PRG4_uc001grt.3_Silent_p.P7P|PRG4_uc009wyl.2_Silent_p.P7P|PRG4_uc009wym.2_Silent_p.P7P|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	7					cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						AAACACTTCCCATTTACCTGT	0.373													21	44					0	0	1	0	0
TPR	7175	broad.mit.edu	37	1	186292914	186292914	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186292914G>A	uc001grv.2	-	43	6498	c.6201C>T	c.(6199-6201)GCC>GCT	p.A2067A		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	2067					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		GTGCTCGAGGGGCCTGTCTTT	0.517			T	NTRK1	papillary thyroid								63	131					0	0	1	0	0
PTGS2	5743	broad.mit.edu	37	1	186646786	186646786	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186646786G>A	uc001gsb.2	-	5	771	c.634C>T	c.(634-636)CAT>TAT	p.H212Y	PTGS2_uc009wyo.2_Missense_Mutation_p.H59Y	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	212					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	CTTACCCCATGGCCCAGCCCG	0.408													47	105					0	0	1	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186862233	186862233	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:186862233C>T	uc001gsc.2	+	4	411	c.206C>T	c.(205-207)CCT>CTT	p.P69L	PLA2G4A_uc010pos.1_Missense_Mutation_p.P69L	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	69	C2.|Phospholipid binding (Probable).				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	GACATAAACCCTGTGTGGAAT	0.378													68	217					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190067218	190067218	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:190067218G>A	uc001gse.1	-	8	2463	c.2231C>T	c.(2230-2232)TCT>TTT	p.S744F	FAM5C_uc010pot.1_Missense_Mutation_p.S642F	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	744						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CTGCAGAGCAGATTGGATCCT	0.428													47	109					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190067485	190067485	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:190067485G>A	uc001gse.1	-	8	2196	c.1964C>T	c.(1963-1965)TCC>TTC	p.S655F	FAM5C_uc010pot.1_Missense_Mutation_p.S553F	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	655						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CAGGTTCCGGGAAGGGTCAAT	0.443													42	131					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190068213	190068213	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:190068213C>T	uc001gse.1	-	8	1468	c.1236G>A	c.(1234-1236)GAG>GAA	p.E412E	FAM5C_uc010pot.1_Silent_p.E310E	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	412						extracellular region		p.E412K(1)		lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GGAGGCCGTTCTCATTGCAGT	0.488													13	27					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190129977	190129977	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:190129977G>A	uc001gse.1	-	7	1237	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	FAM5C_uc010pot.1_Silent_p.F233F	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	335						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					ATGTGTTGAGGAAATAATTCA	0.299													37	84					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190195323	190195323	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:190195323G>A	uc001gse.1	-	6	1082	c.850C>T	c.(850-852)CCC>TCC	p.P284S	FAM5C_uc010pot.1_Missense_Mutation_p.P182S	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	284						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GGAAATTTGGGACCACAGTGA	0.438													20	61					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190234049	190234050	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:190234049_190234050CC>TT	uc001gse.1	-	4	795_796	c.563_564GG>AA	c.(562-564)AGG>AAA	p.R188K	FAM5C_uc010pot.1_Missense_Mutation_p.R86K	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	188						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GGGTGCTGTCCCTGTCAATGAA	0.441													43	99					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190250839	190250839	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:190250839C>T	uc001gse.1	-	3	510	c.278G>A	c.(277-279)AGA>AAA	p.R93K	FAM5C_uc010pot.1_Intron	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	93						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GAAATTTCTTCTCTCAACTGC	0.398													20	91					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190423945	190423945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:190423945G>A	uc001gse.1	-	2	308	c.76C>T	c.(76-78)CAT>TAT	p.H26Y	FAM5C_uc010pot.1_5'UTR	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	26						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					ACCCAGCAATGAAGACTCAGT	0.522													16	45					0	0	1	0	0
RGS21	431704	broad.mit.edu	37	1	192321319	192321319	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:192321319C>T	uc001gsh.2	+	4	405	c.231C>T	c.(229-231)TTC>TTT	p.F77F		NM_001039152	NP_001034241	Q2M5E4	RGS21_HUMAN	regulator of G-protein signaling 21	77	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|skin(1)	2						ATTCTGAATTCATTGAAGCTG	0.388													21	44					0	0	1	0	0
RGS1	5996	broad.mit.edu	37	1	192544995	192544995	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:192544995G>A	uc001gsi.1	+	1	139	c.73G>A	c.(73-75)GAA>AAA	p.E25K	RGS1_uc010pou.1_Missense_Mutation_p.E25K	NM_002922	NP_002913	Q08116	RGS1_HUMAN	regulator of G-protein signalling 1	25					immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of signal transduction	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity				0		Breast(1374;0.188)				TAACCCAAAGGAATTGAAAGG	0.418													23	50					0	0	1	0	0
RGS1	5996	broad.mit.edu	37	1	192545472	192545472	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:192545472G>A	uc001gsi.1	+	2	261	c.195G>A	c.(193-195)ATG>ATA	p.M65I	RGS1_uc010pou.1_Missense_Mutation_p.M65I	NM_002922	NP_002913	Q08116	RGS1_HUMAN	regulator of G-protein signalling 1	65					immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of signal transduction	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity				0		Breast(1374;0.188)				AATCTGGAATGAAATCTTCCA	0.343													24	49					0	0	1	0	0
RGS1	5996	broad.mit.edu	37	1	192545481	192545481	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:192545481C>T	uc001gsi.1	+	2	270	c.204C>T	c.(202-204)TCC>TCT	p.S68S	RGS1_uc010pou.1_Silent_p.S68S	NM_002922	NP_002913	Q08116	RGS1_HUMAN	regulator of G-protein signalling 1	68					immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of signal transduction	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity				0		Breast(1374;0.188)				TGAAATCTTCCAAGTCCAAGG	0.343													19	50					0	0	1	0	0
TROVE2	6738	broad.mit.edu	37	1	193046046	193046046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:193046046C>T	uc001gss.2	+	5	1127	c.952C>T	c.(952-954)CGT>TGT	p.R318C	TROVE2_uc001gst.1_Missense_Mutation_p.R43C|TROVE2_uc001gsu.1_Missense_Mutation_p.R43C|TROVE2_uc001gsv.1_Missense_Mutation_p.R318C|TROVE2_uc001gsw.2_Missense_Mutation_p.R318C|TROVE2_uc009wyp.2_Missense_Mutation_p.R318C|TROVE2_uc009wyq.2_Missense_Mutation_p.R318C|TROVE2_uc001gsx.1_Missense_Mutation_p.R318C	NM_004600	NP_004591	P10155	RO60_HUMAN	TROVE domain family, member 2 isoform 2	318	TROVE.				transcription from RNA polymerase III promoter	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|RNA binding				0						TTTCTAGGCTCGTATACATCC	0.328													4	41					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196295998	196295998	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196295998C>T	uc001gtd.1	-	19	2185	c.2125G>A	c.(2125-2127)GAG>AAG	p.E709K	KCNT2_uc009wyt.1_Intron|KCNT2_uc001gte.1_Missense_Mutation_p.E659K|KCNT2_uc001gtf.1_Missense_Mutation_p.E709K|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.E709K|KCNT2_uc001gth.1_Missense_Mutation_p.E230K	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	709	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTTGCATCCTCATAGTAGTTA	0.318													42	102					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196309524	196309524	+	Missense_Mutation	SNP	G	A	A	rs140538298		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196309524G>A	uc001gtd.1	-	16	1790	c.1730C>T	c.(1729-1731)TCG>TTG	p.S577L	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.S527L|KCNT2_uc001gtf.1_Missense_Mutation_p.S577L|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.S577L|KCNT2_uc001gth.1_Missense_Mutation_p.S98L	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	577	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						ATGATAAAACGACCTGGACAC	0.299													30	106					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196398761	196398761	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196398761G>A	uc001gtd.1	-	9	825	c.765C>T	c.(763-765)TCC>TCT	p.S255S	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Silent_p.S255S|KCNT2_uc001gtf.1_Silent_p.S255S|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Silent_p.S255S|KCNT2_uc009wyv.1_Silent_p.S230S	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	255	Extracellular (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CAAAAAGCTTGGAGGACCATG	0.403													27	67					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196646781	196646781	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196646781G>A	uc001gtj.3	+	5	843	c.603G>A	c.(601-603)GAG>GAA	p.E201E	CFH_uc001gti.3_Silent_p.E201E|CFH_uc009wyw.2_Silent_p.E201E|CFH_uc009wyx.2_Intron	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	201	Sushi 3.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GGAGTAAAGAGAAACCAAAGT	0.328													30	144					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196659300	196659300	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196659300C>T	uc001gtj.3	+	9	1507	c.1267C>T	c.(1267-1269)CCA>TCA	p.P423S	CFH_uc001gti.3_Missense_Mutation_p.P423S|CFH_uc009wyw.2_Missense_Mutation_p.P398S|CFH_uc009wyx.2_Missense_Mutation_p.P359S	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	423	Sushi 7.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CTACGCTCTTCCAAAAGCGCA	0.418													26	44					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196709907	196709907	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196709907C>T	uc001gtj.3	+	18	3181	c.2941C>T	c.(2941-2943)CCT>TCT	p.P981S		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	981	Sushi 16.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ATGGTCTCACCCTCCATCATG	0.343													18	66					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196716443	196716443	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196716443G>A	uc001gtj.3	+	22	3936	c.3696G>A	c.(3694-3696)TAG>TAA	p.*1232*		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1232					complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CAAAAAGATAGAATCAATCAT	0.338													20	56					0	0	1	0	0
CFHR4	10877	broad.mit.edu	37	1	196871677	196871677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196871677C>T	uc001gto.2	+	2	257	c.188C>T	c.(187-189)CCT>CTT	p.P63L	CFHR4_uc009wyy.2_Missense_Mutation_p.P62L|CFHR4_uc001gtp.2_Missense_Mutation_p.P63L	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	63	Sushi 1.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						TTTGTGACTCCTTCAGGAAGT	0.398													56	158					0	0	1	0	0
CFHR4	10877	broad.mit.edu	37	1	196883708	196883708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196883708G>A	uc001gto.2	+	4	592	c.523G>A	c.(523-525)GAA>AAA	p.E175K	CFHR4_uc009wyy.2_Missense_Mutation_p.E421K|CFHR4_uc001gtp.2_Missense_Mutation_p.E422K	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	175	Sushi 3.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						ATTGGACTACGAATGCTACGA	0.393													14	64					0	0	1	0	0
CFHR2	3080	broad.mit.edu	37	1	196918671	196918671	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196918671G>A	uc001gtq.1	+	2	222	c.145G>A	c.(145-147)GAA>AAA	p.E49K	CFHR2_uc001gtr.1_Intron	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	49	Sushi 1.					extracellular region				skin(2)|ovary(1)	3						TCCTACAGGGGAAGTTTTCTA	0.363													27	58					0	0	1	0	0
CFHR2	3080	broad.mit.edu	37	1	196928210	196928210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196928210G>A	uc001gtq.1	+	5	890	c.813G>A	c.(811-813)TAG>TAA	p.*271*	CFHR2_uc001gtr.1_Silent_p.*147*	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	271						extracellular region				skin(2)|ovary(1)	3						AAGAAAAATAGAATCAATGGC	0.284													14	59					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196952140	196952140	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196952140C>T	uc001gts.3	+	2	312	c.184C>T	c.(184-186)CCT>TCT	p.P62S		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	62	Sushi 1.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TTTTGTGTCTCCTTCAAAATC	0.393													33	90					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196964899	196964899	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196964899G>A	uc001gts.3	+	5	788	c.660G>A	c.(658-660)AAG>AAA	p.K220K		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	220	Sushi 4.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GTGAAGTTAAGGAGATAAGAA	0.338													24	63					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196965187	196965187	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:196965187G>A	uc001gts.3	+	6	954	c.826G>A	c.(826-828)GAG>AAG	p.E276K		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	276	Sushi 5.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						ACCTGAACTCGAGTACGGTTA	0.348													37	114					0	0	1	0	0
F13B	2165	broad.mit.edu	37	1	197019875	197019875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197019875C>T	uc001gtt.1	-	10	1734	c.1690G>A	c.(1690-1692)GAG>AAG	p.E564K		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	564	Sushi 9.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CAATAGGCCTCCCTAGATCCT	0.338													15	54					0	0	1	0	0
F13B	2165	broad.mit.edu	37	1	197024862	197024862	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197024862G>A	uc001gtt.1	-	8	1381	c.1337C>T	c.(1336-1338)TCC>TTC	p.S446F		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	446	Sushi 7.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						AACAGGTGGGGATGACCATTT	0.368													39	73					0	0	1	0	0
F13B	2165	broad.mit.edu	37	1	197032181	197032181	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197032181G>A	uc001gtt.1	-	2	115	c.71C>T	c.(70-72)CCC>CTC	p.P24L		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	24	Sushi 1.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						AAAACCACAGGGTTTCTCTGA	0.294													62	163					0	0	1	0	0
ASPM	259266	broad.mit.edu	37	1	197073649	197073649	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197073649G>A	uc001gtu.2	-	18	4989	c.4732C>T	c.(4732-4734)CGA>TGA	p.R1578*	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1578					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TTTAAAAATCGAACTCTGTCT	0.338													19	72					0	0	1	0	0
ASPM	259266	broad.mit.edu	37	1	197102708	197102708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197102708G>A	uc001gtu.2	-	6	2448	c.2191C>T	c.(2191-2193)CTT>TTT	p.L731F	ASPM_uc001gtv.2_Missense_Mutation_p.L731F|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	731					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						ATTCCCAAAAGAAGAGTAGCA	0.338													12	44					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197298091	197298091	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197298091G>A	uc001gtz.2	+	2	745	c.610G>A	c.(610-612)GAA>AAA	p.E204K	CRB1_uc010poz.1_Missense_Mutation_p.E135K|CRB1_uc001gty.1_Missense_Mutation_p.E204K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.E204K|CRB1_uc010ppb.1_Missense_Mutation_p.E204K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	204	Extracellular (Potential).|EGF-like 5; calcium-binding (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ATGCCTCAATGAAATAGGAAG	0.443													15	38					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390319	197390319	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197390319G>A	uc001gtz.2	+	6	1496	c.1361G>A	c.(1360-1362)GGA>GAA	p.G454E	CRB1_uc010poz.1_Missense_Mutation_p.G385E|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G342E|CRB1_uc010ppb.1_Missense_Mutation_p.G454E|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_5'UTR|CRB1_uc001gub.1_Missense_Mutation_p.G103E	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	454	Extracellular (Potential).|EGF-like 11.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CTAAATAATGGAACATGCATC	0.468													37	102					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390399	197390399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197390399G>A	uc001gtz.2	+	6	1576	c.1441G>A	c.(1441-1443)GAA>AAA	p.E481K	CRB1_uc010poz.1_Missense_Mutation_p.E412K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.E369K|CRB1_uc010ppb.1_Missense_Mutation_p.E481K|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_5'UTR|CRB1_uc001gub.1_Missense_Mutation_p.E130K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	481	Extracellular (Potential).|EGF-like 11.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GTCCCTGTGTGAAATCGCAAC	0.498													6	73					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390723	197390723	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197390723G>A	uc001gtz.2	+	6	1900	c.1765G>A	c.(1765-1767)GAG>AAG	p.E589K	CRB1_uc010poz.1_Missense_Mutation_p.E520K|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Missense_Mutation_p.E477K|CRB1_uc010ppb.1_Missense_Mutation_p.E589K|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.E70K|CRB1_uc001gub.1_Missense_Mutation_p.E238K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	589	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CTCCTGTAAGGAGAAATGCAT	0.458													36	117					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390859	197390859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197390859C>T	uc001gtz.2	+	6	2036	c.1901C>T	c.(1900-1902)CCA>CTA	p.P634L	CRB1_uc010poz.1_Missense_Mutation_p.P565L|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Missense_Mutation_p.P522L|CRB1_uc010ppb.1_Missense_Mutation_p.P634L|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.P115L|CRB1_uc001gub.1_Missense_Mutation_p.P283L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	634	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TATAATATGCCATCCACACCT	0.408													54	149					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390946	197390946	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197390946C>T	uc001gtz.2	+	6	2123	c.1988C>T	c.(1987-1989)TCA>TTA	p.S663L	CRB1_uc010poz.1_Missense_Mutation_p.S594L|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.S551L|CRB1_uc010ppb.1_Missense_Mutation_p.S663L|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.S144L|CRB1_uc001gub.1_Missense_Mutation_p.S312L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	663	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TCTGGCTCATCATTAAATGTC	0.443													17	162					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197396914	197396914	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197396914C>T	uc001gtz.2	+	7	2594	c.2459C>T	c.(2458-2460)TCT>TTT	p.S820F	CRB1_uc010poz.1_Missense_Mutation_p.S751F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.S708F|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.S301F|CRB1_uc001gub.1_Missense_Mutation_p.S469F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	820	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ATTTCTGCTTCTACGTGGAAA	0.373													14	42					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197403884	197403884	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197403884G>A	uc001gtz.2	+	9	3026	c.2891G>A	c.(2890-2892)AGA>AAA	p.R964K	CRB1_uc010poz.1_Missense_Mutation_p.R940K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.R852K|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.R445K|CRB1_uc001gub.1_Missense_Mutation_p.R613K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	964	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ATATTATTCAGAAGCAATGGG	0.323													38	87					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197403941	197403941	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197403941G>A	uc001gtz.2	+	9	3083	c.2948G>A	c.(2947-2949)AGG>AAG	p.R983K	CRB1_uc010poz.1_Missense_Mutation_p.R959K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.R871K|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.R464K|CRB1_uc001gub.1_Missense_Mutation_p.R632K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	983	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTCAGAACAAGGGATGCAAAT	0.338													21	107					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197404228	197404228	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197404228G>A	uc001gtz.2	+	9	3370	c.3235G>A	c.(3235-3237)GAT>AAT	p.D1079N	CRB1_uc010poz.1_Missense_Mutation_p.D1055N|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.D967N|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.D560N|CRB1_uc001gub.1_Missense_Mutation_p.D728N	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1079	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GGATAATACAGATATTTATGT	0.418													19	109					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197404312	197404312	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197404312C>T	uc001gtz.2	+	9	3454	c.3319C>T	c.(3319-3321)CTC>TTC	p.L1107F	CRB1_uc010poz.1_Missense_Mutation_p.L1083F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.L995F|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.L588F|CRB1_uc001gub.1_Missense_Mutation_p.L756F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1107	Extracellular (Potential).|Laminin G-like 3.		L -> P (in LCA8).|L -> R (in LCA8).		cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGGCATTTATCTCTCTTACTT	0.368													28	97					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197411416	197411416	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197411416G>A	uc001gtz.2	+	11	4134	c.3999G>A	c.(3997-3999)GAG>GAA	p.E1333E	CRB1_uc010poz.1_Silent_p.E1309E|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.E1221E|CRB1_uc010ppb.1_Silent_p.E797E|CRB1_uc010ppd.1_Silent_p.E814E|CRB1_uc001gub.1_3'UTR	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1333	Extracellular (Potential).|EGF-like 19; calcium-binding (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGCGCTGCGAGGTGGACGTAA	0.488													63	221					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197446823	197446823	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197446823C>T	uc001gtz.2	+	12	4170	c.4035C>T	c.(4033-4035)TTC>TTT	p.F1345F	CRB1_uc010poz.1_Silent_p.F1321F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.F1233F|CRB1_uc010ppb.1_Silent_p.F809F|CRB1_uc010ppd.1_Silent_p.F826F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1345	Extracellular (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CCGACATTTTCACCACTATTG	0.438													6	51					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197446859	197446859	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197446859G>A	uc001gtz.2	+	12	4206	c.4071G>A	c.(4069-4071)CTG>CTA	p.L1357L	CRB1_uc010poz.1_Silent_p.L1333L|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.L1245L|CRB1_uc010ppb.1_Silent_p.L821L|CRB1_uc010ppd.1_Silent_p.L838L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1357	Helical; (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CCTTGTTACTGATCCTCTTGC	0.502													10	53					0	0	1	0	0
DENND1B	163486	broad.mit.edu	37	1	197522230	197522230	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197522230G>A	uc001guf.3	-	16	1500	c.1162C>T	c.(1162-1164)CGA>TGA	p.R388*	DENND1B_uc010ppe.1_Nonsense_Mutation_p.R368*|DENND1B_uc010ppf.1_Intron|DENND1B_uc001gue.3_Nonsense_Mutation_p.R358*	NM_144977	NP_659414	Q6P3S1	DEN1B_HUMAN	DENN/MADD domain containing 1B isoform 2	388	dDENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity				0						TTTGCCAGTCGACCATCGATA	0.299													9	75					0	0	1	0	0
LHX9	56956	broad.mit.edu	37	1	197889254	197889254	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197889254C>T	uc001guk.1	+	2	764	c.327C>T	c.(325-327)CTC>CTT	p.L109L	LHX9_uc001gui.1_Silent_p.L100L|LHX9_uc001guj.1_Silent_p.L115L	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	109	LIM zinc-binding 1.				motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						AGTCCGAGCTCACCTGCTTTG	0.557													21	328					0	0	1	0	0
LHX9	56956	broad.mit.edu	37	1	197890485	197890486	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:197890485_197890486GG>AA	uc001guk.1	+	3	866_867	c.429_430GG>AA	c.(427-432)TCGGAG>TCAAAG	p.E144K	LHX9_uc001gui.1_Missense_Mutation_p.E135K|LHX9_uc001guj.1_Missense_Mutation_p.E150K	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	144	LIM zinc-binding 2.				motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						TTTCCGCCTCGGAGATGGTCAT	0.574													24	64					0	0	1	0	0
ATP6V1G3	127124	broad.mit.edu	37	1	198492560	198492560	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:198492560C>T	uc001gup.2	-	4	424	c.318G>A	c.(316-318)ATG>ATA	p.M106I	ATP6V1G3_uc009wzd.2_Missense_Mutation_p.M112I|ATP6V1G3_uc001guo.2_3'UTR	NM_133262	NP_573569	Q96LB4	VATG3_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	106					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase complex	ATPase binding			central_nervous_system(1)	1						TTTCTGGTTTCATGTCACAGA	0.398													8	30					0	0	1	0	0
PTPRC	5788	broad.mit.edu	37	1	198665886	198665886	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:198665886C>T	uc001gur.1	+	4	320	c.140C>T	c.(139-141)CCC>CTC	p.P47L	PTPRC_uc001gus.1_Missense_Mutation_p.P47L|PTPRC_uc001gut.1_Intron|PTPRC_uc009wze.1_Intron|PTPRC_uc009wzf.1_Intron|PTPRC_uc010ppg.1_Intron|PTPRC_uc001guu.1_Missense_Mutation_p.P90L|PTPRC_uc001guv.1_Intron|PTPRC_uc001guw.1_Intron	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	47	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TCAAGTGACCCCTTACCTACT	0.418													23	135					0	0	1	0	0
PTPRC	5788	broad.mit.edu	37	1	198687314	198687314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:198687314C>T	uc001gur.1	+	14	1716	c.1536C>T	c.(1534-1536)CCC>CCT	p.P512P	PTPRC_uc001gus.1_Silent_p.P464P|PTPRC_uc001gut.1_Silent_p.P351P|PTPRC_uc009wzf.1_Silent_p.P400P|PTPRC_uc010ppg.1_Silent_p.P448P	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	512	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GTAATGGCCCCCATGAACGTT	0.428													19	55					0	0	1	0	0
PTPRC	5788	broad.mit.edu	37	1	198713186	198713186	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:198713186C>T	uc001gur.1	+	26	2875	c.2695C>T	c.(2695-2697)CAG>TAG	p.Q899*	PTPRC_uc001gus.1_Nonsense_Mutation_p.Q851*|PTPRC_uc001gut.1_Nonsense_Mutation_p.Q738*	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	899	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						ATTGTAGGCCCAGTACATCTT	0.328													10	41					0	0	1	0	0
PTPRC	5788	broad.mit.edu	37	1	198721736	198721736	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:198721736G>A	uc001gur.1	+	31	3518	c.3338G>A	c.(3337-3339)CGA>CAA	p.R1113Q	PTPRC_uc001gus.1_Missense_Mutation_p.R1065Q|PTPRC_uc001gut.1_Missense_Mutation_p.R952Q	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	1113	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						AAAGACTCTCGAACTGTGTAC	0.368													6	24					0	0	1	0	0
PTPRC	5788	broad.mit.edu	37	1	198725306	198725306	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:198725306C>T	uc001gur.1	+	33	4091	c.3911C>T	c.(3910-3912)TCA>TTA	p.S1304L	PTPRC_uc001gus.1_Missense_Mutation_p.S1256L|PTPRC_uc001gut.1_Missense_Mutation_p.S1143L	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	1304	Cytoplasmic (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						AATCAAGGTTCATAGGAAAAG	0.413													17	40					0	0	1	0	0
NR5A2	2494	broad.mit.edu	37	1	200008813	200008813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200008813C>T	uc001gvb.2	+	2	298	c.92C>T	c.(91-93)TCC>TTC	p.S31F	NR5A2_uc001gvc.2_Intron|NR5A2_uc009wzh.2_5'UTR|NR5A2_uc010pph.1_5'Flank|NR5A2_uc009wzg.1_RNA	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	31					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					CGACACGGATCCCCCATCCCC	0.647													30	113					0	0	1	0	0
NR5A2	2494	broad.mit.edu	37	1	200143213	200143213	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200143213C>T	uc001gvb.2	+	8	1707	c.1501C>T	c.(1501-1503)CTT>TTT	p.L501F	NR5A2_uc001gvc.2_Missense_Mutation_p.L455F|NR5A2_uc009wzh.2_Missense_Mutation_p.L461F|NR5A2_uc010pph.1_Missense_Mutation_p.L429F	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	501					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					ACAGCTACTTCTTCGACTACC	0.498													16	30					0	0	1	0	0
FAM58B	339521	broad.mit.edu	37	1	200182892	200182892	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200182892C>T	uc009wzi.1	+	1	237	c.201C>T	c.(199-201)ATC>ATT	p.I67I		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	67					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					GCGAGACCATCCTGGACGCCT	0.527													32	150					0	0	1	0	0
KIF14	9928	broad.mit.edu	37	1	200534713	200534713	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200534713G>A	uc010ppk.1	-	24	4185	c.3746C>T	c.(3745-3747)TCG>TTG	p.S1249L	KIF14_uc010ppj.1_Missense_Mutation_p.S758L	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	1249	Required for CIT-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						AAAATCTAACGAAGAACCAAT	0.323													30	58					0	0	1	0	0
DDX59	83479	broad.mit.edu	37	1	200635747	200635747	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200635747G>A	uc009wzk.2	-	2	365	c.122C>T	c.(121-123)CCC>CTC	p.P41L	DDX59_uc010ppl.1_Missense_Mutation_p.P41L	NM_001031725	NP_001026895	Q5T1V6	DDX59_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	41						intracellular	ATP binding|ATP-dependent helicase activity|metal ion binding|RNA binding			ovary(2)|breast(1)|central_nervous_system(1)	4						AGCATCAACGGGAACATCTCT	0.468													50	139					0	0	1	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200813990	200813990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200813990C>T	uc001gvl.2	+	9	1405	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.P368S|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.P368S	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	379						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TTCTGACTTCCCTTCAAGGTA	0.269													11	68					0	0	1	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200819244	200819244	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200819244C>T	uc001gvl.2	+	12	3650	c.3380C>T	c.(3379-3381)TCC>TTC	p.S1127F	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.S1116F|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.S1100F	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1127						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						ATTGAAGTTTCCCTCTCAGAT	0.413													63	115					0	0	1	0	0
GPR25	2848	broad.mit.edu	37	1	200842325	200842325	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200842325C>T	uc001gvn.1	+	1	160	c.160C>T	c.(160-162)CTG>TTG	p.L54L		NM_005298	NP_005289	O00155	GPR25_HUMAN	G protein-coupled receptor 25	54	Helical; Name=1; (Potential).					integral to plasma membrane				ovary(1)	1						CGCCGTGGGCCTGCTGGGCAA	0.592													4	19					0	0	1	0	0
C1orf106	55765	broad.mit.edu	37	1	200877935	200877935	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200877935G>A	uc001gvo.2	+	7	937	c.907G>A	c.(907-909)GGT>AGT	p.G303S	C1orf106_uc010ppm.1_Missense_Mutation_p.G218S	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	303	Pro-rich.									skin(2)|ovary(1)	3						AACCCTTGAGGGTCTGCAGCC	0.602													51	104					0	0	1	0	0
C1orf106	55765	broad.mit.edu	37	1	200880878	200880878	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200880878C>T	uc001gvo.2	+	9	1542	c.1512C>T	c.(1510-1512)GTC>GTT	p.V504V	C1orf106_uc010ppm.1_Silent_p.V419V	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	504										skin(2)|ovary(1)	3						GAGAGCTGGTCGCCCACCACC	0.701													41	45					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200943915	200943915	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200943915C>T	uc001gvs.1	-	34	5058	c.4741G>A	c.(4741-4743)GGT>AGT	p.G1581S	KIF21B_uc001gvr.1_Missense_Mutation_p.G1568S|KIF21B_uc009wzl.1_Missense_Mutation_p.G1581S|KIF21B_uc010ppn.1_Missense_Mutation_p.G1568S	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1581	WD 6.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TTGATCTCACCGATGGGTGTG	0.612													42	82					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200957929	200957930	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200957929_200957930GG>AA	uc001gvs.1	-	22	3579_3580	c.3262_3263CC>TT	c.(3262-3264)CCC>TTC	p.P1088F	KIF21B_uc001gvr.1_Missense_Mutation_p.P1088F|KIF21B_uc009wzl.1_Missense_Mutation_p.P1088F|KIF21B_uc010ppn.1_Missense_Mutation_p.P1088F	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1088					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CTGCAGCTCGGGGTGAGCTTCA	0.629													13	30					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200965372	200965372	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200965372C>T	uc001gvs.1	-	15	2546	c.2229G>A	c.(2227-2229)AGG>AGA	p.R743R	KIF21B_uc001gvr.1_Silent_p.R743R|KIF21B_uc009wzl.1_Silent_p.R743R|KIF21B_uc010ppn.1_Silent_p.R743R	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	743	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TCTTCAGCTCCCTCTCGTAGC	0.612													74	204					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200967555	200967555	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200967555G>A	uc001gvs.1	-	14	2351	c.2034C>T	c.(2032-2034)ATC>ATT	p.I678I	KIF21B_uc001gvr.1_Silent_p.I678I|KIF21B_uc009wzl.1_Silent_p.I678I|KIF21B_uc010ppn.1_Silent_p.I678I	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	678	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GTGTGTCTCGGATCTTGTTCT	0.602													35	116					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200967678	200967679	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200967678_200967679GG>AA	uc001gvs.1	-	14	2227_2228	c.1910_1911CC>TT	c.(1909-1911)GCC>GTT	p.A637V	KIF21B_uc001gvr.1_Missense_Mutation_p.A637V|KIF21B_uc009wzl.1_Missense_Mutation_p.A637V|KIF21B_uc010ppn.1_Missense_Mutation_p.A637V	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	637	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						AAGTCAGGTCGGCCAGGTCCGC	0.589													28	63					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200971323	200971323	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:200971323C>T	uc001gvs.1	-	9	1685	c.1368G>A	c.(1366-1368)ATG>ATA	p.M456I	KIF21B_uc001gvr.1_Missense_Mutation_p.M456I|KIF21B_uc009wzl.1_Missense_Mutation_p.M456I|KIF21B_uc010ppn.1_Missense_Mutation_p.M456I|KIF21B_uc001gvt.1_3'UTR	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	456	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CCTCCTGGCTCATGAGCTGGG	0.627													27	58					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201012658	201012658	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201012658C>T	uc001gvv.2	-	40	5026	c.4799G>A	c.(4798-4800)AGG>AAG	p.R1600K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1600	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GCCTCCAGTCCTCTAGGGGCA	0.577											OREG0014067	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	59					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201016711	201016711	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201016711C>T	uc001gvv.2	-	37	4712	c.4485G>A	c.(4483-4485)AAG>AAA	p.K1495K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1495	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCCAGATCTTCTTGATGATGG	0.527													18	58					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201023684	201023684	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201023684G>A	uc001gvv.2	-	29	3842	c.3615C>T	c.(3613-3615)TTC>TTT	p.F1205F		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1205	IV.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGAGGCCAGGAAAGTCTGTG	0.393													5	22					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201029892	201029892	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201029892G>A	uc001gvv.2	-	26	3535	c.3308C>T	c.(3307-3309)CCC>CTC	p.P1103L		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1103	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGGTTTTTGGGAATGTAGCA	0.537													18	277					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201035010	201035010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201035010G>A	uc001gvv.2	-	22	3036	c.2809C>T	c.(2809-2811)CTC>TTC	p.L937F		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	937	Helical; Name=S5 of repeat III; (Potential).|III.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AACTGTAGGAGGGTAGTGACC	0.647													10	24					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201046127	201046127	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201046127C>T	uc001gvv.2	-	12	1975	c.1748G>A	c.(1747-1749)GGG>GAG	p.G583E		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	583	II.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GTCATACCTCCCCCCAAAGAG	0.448													35	100					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201063042	201063042	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201063042C>T	uc001gvv.2	-	3	593	c.366G>A	c.(364-366)TGG>TGA	p.W122*		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	122	Helical; Name=S3 of repeat I; (Potential).|I.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCAGCACATTCCAGCCACTGC	0.547													24	61					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201079390	201079390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201079390C>T	uc001gvv.2	-	2	387	c.160G>A	c.(160-162)GAG>AAG	p.E54K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	54	I.|Helical; Name=S1 of repeat I; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	ATGATCGTCTCGAAGGGCCTG	0.577													23	53					0	0	1	0	0
TMEM9	252839	broad.mit.edu	37	1	201115880	201115881	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201115880_201115881GG>AA	uc001gvw.2	-	4	576_577	c.254_255CC>TT	c.(253-255)ACC>ATT	p.T85I	TMEM9_uc001gvx.2_Missense_Mutation_p.T85I|TMEM9_uc001gvy.2_Missense_Mutation_p.T85I|TMEM9_uc010ppo.1_Missense_Mutation_p.T110I|TMEM9_uc001gvz.2_Missense_Mutation_p.T88I|TMEM9_uc001gwa.2_Missense_Mutation_p.T85I|TMEM9_uc010ppp.1_Missense_Mutation_p.T85I	NM_016456	NP_057540	Q9P0T7	TMEM9_HUMAN	transmembrane protein 9 precursor	85	Extracellular (Potential).				transport	integral to membrane|late endosome membrane|lysosomal membrane					0		Breast(1374;0.000301)				TGATGGTGGTGGTGCTGCGCTC	0.589													19	99					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201182696	201182696	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201182696G>A	uc001gwc.2	+	1	927	c.155G>A	c.(154-156)AGT>AAT	p.S52N	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GCTACCCGGAGTTCCACATCC	0.572													22	68					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201190778	201190778	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201190778G>A	uc001gwc.2	+	8	2357	c.1585G>A	c.(1585-1587)GGA>AGA	p.G529R	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GCTTCGGCCTGGAGAGGGCTA	0.607													14	32					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201196111	201196111	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201196111G>A	uc001gwc.2	+	12	3140	c.2368G>A	c.(2368-2370)GAG>AAG	p.E790K	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CCAGGGCTGCGAGTGCTGCAT	0.677													45	81					0	0	1	0	0
PKP1	5317	broad.mit.edu	37	1	201286864	201286864	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201286864C>T	uc001gwd.2	+	5	1262	c.1011C>T	c.(1009-1011)CTC>CTT	p.L337L	PKP1_uc001gwe.2_Silent_p.L337L|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	337	ARM 3.				cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						CAGTCAGCCTCCTGAGGAGAA	0.647													11	31					0	0	1	0	0
PKP1	5317	broad.mit.edu	37	1	201287786	201287786	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201287786G>A	uc001gwd.2	+	6	1346	c.1095G>A	c.(1093-1095)GAG>GAA	p.E365E	PKP1_uc001gwe.2_Silent_p.E365E|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	365	ARM 4.				cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						AGCTGAAGGAGGAACTCATTG	0.597													13	46					0	0	1	0	0
TNNT2	7139	broad.mit.edu	37	1	201332429	201332429	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201332429G>A	uc001gwf.2	-	12	664	c.595C>T	c.(595-597)CAG>TAG	p.Q199*	TNNT2_uc009wzn.2_5'Flank|TNNT2_uc009wzo.2_5'Flank|TNNT2_uc009wzp.2_5'Flank|TNNT2_uc001gwg.2_Nonsense_Mutation_p.Q189*|TNNT2_uc001gwh.2_Nonsense_Mutation_p.Q184*|TNNT2_uc001gwi.2_Nonsense_Mutation_p.Q159*|TNNT2_uc009wzr.2_Nonsense_Mutation_p.Q130*|TNNT2_uc001gwj.1_RNA|TNNT2_uc009wzs.1_Nonsense_Mutation_p.Q164*|TNNT2_uc001gwk.1_Nonsense_Mutation_p.Q130*|TNNT2_uc009wzt.1_Nonsense_Mutation_p.Q189*	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	199					ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						CCTACCTTCTGGATGTAACCC	0.552													32	224					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201355491	201355491	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201355491G>A	uc001gwm.2	-	3	1233	c.998C>T	c.(997-999)GCC>GTC	p.A333V	LAD1_uc009wzu.1_Missense_Mutation_p.A355V	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	333						basement membrane	structural molecule activity				0						GAGGCGGGAGGCCACAGTCGG	0.667													4	10					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201355640	201355640	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201355640C>T	uc001gwm.2	-	3	1084	c.849G>A	c.(847-849)AGG>AGA	p.R283R	LAD1_uc009wzu.1_Silent_p.R305R	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	283						basement membrane	structural molecule activity				0						AGGCTGTGGCCCTCTTTGGGG	0.632													31	110					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201356012	201356012	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201356012C>T	uc001gwm.2	-	3	712	c.477G>A	c.(475-477)GAG>GAA	p.E159E	LAD1_uc009wzu.1_Silent_p.E181E	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	159						basement membrane	structural molecule activity				0						CCACCAAGCTCTCCTCCTCCA	0.587													21	116					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201358367	201358367	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201358367G>A	uc001gwm.2	-	2	338	c.103C>T	c.(103-105)CGC>TGC	p.R35C	LAD1_uc009wzu.1_Missense_Mutation_p.R57C	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	35	Poly-Arg.					basement membrane	structural molecule activity				0						CTCAGGTTGCGGTGCCGCCGC	0.657													19	44					0	0	1	0	0
TNNI1	7135	broad.mit.edu	37	1	201380655	201380655	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201380655C>T	uc010ppq.1	-	7	379	c.286G>A	c.(286-288)GAC>AAC	p.D96N	TNNI1_uc001gwo.1_RNA|TNNI1_uc001gwp.2_Missense_Mutation_p.D75N	NM_003281	NP_003272	P19237	TNNI1_HUMAN	troponin I, skeletal, slow	96					muscle filament sliding|regulation of striated muscle contraction	cytosol|troponin complex	actin binding|tropomyosin binding				0						AGCTTCAGGTCCTTAATCTGT	0.637													6	15					0	0	1	0	0
NAV1	89796	broad.mit.edu	37	1	201687649	201687649	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201687649C>T	uc001gwu.2	+	3	1339	c.992C>T	c.(991-993)CCC>CTC	p.P331L		NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	331					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						GGTGACGCGCCCTCTGTGGGT	0.697													13	26					0	0	1	0	0
NAV1	89796	broad.mit.edu	37	1	201752810	201752810	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201752810C>T	uc001gwu.2	+	7	2981	c.2634C>T	c.(2632-2634)CTC>CTT	p.L878L	NAV1_uc001gwv.1_Silent_p.L386L|NAV1_uc001gww.1_Silent_p.L487L|NAV1_uc001gwx.2_Silent_p.L487L|NAV1_uc001gwy.1_Silent_p.L259L	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	878					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						ACCCCAAACTCTCAGGCCTGC	0.597													35	72					0	0	1	0	0
NAV1	89796	broad.mit.edu	37	1	201778347	201778347	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201778347C>T	uc001gwu.2	+	20	4601	c.4254C>T	c.(4252-4254)CTC>CTT	p.L1418L	NAV1_uc001gwx.2_Silent_p.L1027L	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	1421					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						AAGTGACCCTCCGGGTGGTGG	0.512													49	158					0	0	1	0	0
IPO9	55705	broad.mit.edu	37	1	201840306	201840306	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201840306C>T	uc001gwz.2	+	19	2477	c.2427C>T	c.(2425-2427)TTC>TTT	p.F809F		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	809					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						TCATGGTGTTCGCTCATCTGG	0.483													55	134					0	0	1	0	0
LMOD1	25802	broad.mit.edu	37	1	201868737	201868737	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201868737G>A	uc001gxb.2	-	2	1652	c.1404C>T	c.(1402-1404)AGC>AGT	p.S468S	LMOD1_uc010ppu.1_Silent_p.S417S	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	468					muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						CCATGTTGCGGCTGAGCAGAT	0.572													6	16					0	0	1	0	0
LMOD1	25802	broad.mit.edu	37	1	201869723	201869723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201869723C>T	uc001gxb.2	-	2	666	c.418G>A	c.(418-420)GAA>AAA	p.E140K	LMOD1_uc010ppu.1_Intron	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	140					muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						CCACCAGCTTCATCTCTGTCT	0.522													67	206					0	0	1	0	0
ELF3	1999	broad.mit.edu	37	1	201983066	201983066	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:201983066C>T	uc001gxg.3	+	7	4107	c.915C>T	c.(913-915)TTC>TTT	p.F305F	ELF3_uc001gxi.3_Silent_p.F305F|ELF3_uc001gxh.3_Silent_p.F305F	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	305	ETS.				epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						TCTTCAAGTTCCTGCGCTCCG	0.592													5	27					0	0	1	0	0
PTPN7	5778	broad.mit.edu	37	1	202128409	202128409	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202128409C>T	uc001gxm.1	-	2	253	c.122G>A	c.(121-123)AGG>AAG	p.R41K	PTPN7_uc001gxl.1_Missense_Mutation_p.R80K|PTPN7_uc001gxn.1_Missense_Mutation_p.R41K|PTPN7_uc010ppv.1_5'UTR|PTPN7_uc010ppw.1_Missense_Mutation_p.E7K|PTPN7_uc010ppx.1_Missense_Mutation_p.R115K|PTPN7_uc010ppy.1_RNA|PTPN7_uc001gxo.1_5'Flank	NM_002832	NP_002823	P35236	PTN7_HUMAN	protein tyrosine phosphatase, non-receptor type	41	Interaction with MAP kinases.					cytosol|internal side of plasma membrane	protein binding|protein tyrosine phosphatase activity			skin(1)	1						AAGATCTCACCTCTCCTGCAG	0.627													6	41					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202266700	202266700	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202266700G>A	uc001gxu.2	+	7	781	c.781G>A	c.(781-783)GAA>AAA	p.E261K	LGR6_uc001gxv.2_Missense_Mutation_p.E209K|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.E122K|LGR6_uc009xac.1_RNA	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	261	LRR 8.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						CAGACTGCAGGAACTGTAAGC	0.557													30	81					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202272434	202272434	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202272434G>A	uc001gxu.2	+	10	957	c.957G>A	c.(955-957)CAG>CAA	p.Q319Q	LGR6_uc001gxv.2_Silent_p.Q267Q|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Silent_p.Q180Q|LGR6_uc009xac.1_RNA	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	319	LRR 10.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						TGGACATCCAGGAGTTTCCAG	0.502													6	73					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202287109	202287109	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202287109G>A	uc001gxu.2	+	18	1678	c.1678G>A	c.(1678-1680)GAA>AAA	p.E560K	LGR6_uc001gxv.2_Missense_Mutation_p.E508K|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.E421K	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	560	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GTACCTCTTTGAAAGCTGGGG	0.612													35	82					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202287288	202287288	+	Silent	SNP	C	T	T	rs148517456	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202287288C>T	uc001gxu.2	+	18	1857	c.1857C>T	c.(1855-1857)GCC>GCT	p.A619A	LGR6_uc001gxv.2_Silent_p.A567A|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Silent_p.A480A	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	619	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GCCTTCTAGCCTCAGTCGATG	0.627													15	30					0	0	1	0	0
PPP1R12B	4660	broad.mit.edu	37	1	202457675	202457675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202457675C>T	uc001gya.1	+	14	2009	c.1865C>T	c.(1864-1866)CCT>CTT	p.P622L	PPP1R12B_uc001gxz.1_Missense_Mutation_p.P622L|PPP1R12B_uc001gyb.1_5'UTR|PPP1R12B_uc001gyc.1_5'UTR	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	622					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			TATCTGACTCCTGTACGGGAT	0.428													4	21					0	0	1	0	0
KDM5B	10765	broad.mit.edu	37	1	202702705	202702705	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202702705G>A	uc001gyf.2	-	23	3849	c.3733C>T	c.(3733-3735)CGC>TGC	p.R1245C	KDM5B_uc009xag.2_Missense_Mutation_p.R1281C|KDM5B_uc001gyg.1_Missense_Mutation_p.R1087C	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1245					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						TCAGGAAGGCGAACTCGGATA	0.512													44	90					0	0	1	0	0
KDM5B	10765	broad.mit.edu	37	1	202704705	202704705	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202704705G>A	uc001gyf.2	-	22	3391	c.3275C>T	c.(3274-3276)CCT>CTT	p.P1092L	KDM5B_uc009xag.2_Missense_Mutation_p.P1128L|KDM5B_uc001gyg.1_Missense_Mutation_p.P934L	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1092					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						ATCACATCGAGGACACAGCAC	0.388													29	49					0	0	1	0	0
KDM5B	10765	broad.mit.edu	37	1	202710505	202710505	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202710505G>T	uc001gyf.2	-	19	3051	c.2935C>A	c.(2935-2937)CTC>ATC	p.L979I	KDM5B_uc009xag.2_Missense_Mutation_p.L1015I|KDM5B_uc001gyg.1_Missense_Mutation_p.L821I	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	979					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						CTGGCCTTGAGGAGACTCTTG	0.522													17	47					9.16793e-09	9.19479e-09	1	1	0
KDM5B	10765	broad.mit.edu	37	1	202710650	202710650	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202710650G>A	uc001gyf.2	-	19	2906	c.2790C>T	c.(2788-2790)CCC>CCT	p.P930P	KDM5B_uc009xag.2_Silent_p.P966P|KDM5B_uc001gyg.1_Silent_p.P772P	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	930					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						TAAGGGAGCTGGGGTCTAGGC	0.522													22	41					0	0	1	0	0
KDM5B	10765	broad.mit.edu	37	1	202777349	202777349	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202777349G>A	uc001gyf.2	-	1	201	c.85C>T	c.(85-87)CCA>TCA	p.P29S	KDM5B_uc009xag.2_Missense_Mutation_p.P29S|KDM5B_uc001gyg.1_5'Flank	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	29					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						CACTCGGGTGGAGGCAGGAAC	0.517													22	42					0	0	1	0	0
KLHL12	59349	broad.mit.edu	37	1	202861744	202861744	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202861744G>A	uc001gyo.1	-	12	1824	c.1624C>T	c.(1624-1626)CCT>TCT	p.P542S	KLHL12_uc001gym.1_3'UTR|KLHL12_uc001gyn.1_3'UTR|KLHL12_uc010pqc.1_Missense_Mutation_p.P580S	NM_021633	NP_067646	Q53G59	KLH12_HUMAN	kelch-like 12	542	Kelch 6.|Interaction with DVL3.				Wnt receptor signaling pathway		protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.166)			TCGATGATAGGGTCATAACAT	0.418													13	59					0	0	1	0	0
KLHL12	59349	broad.mit.edu	37	1	202861773	202861773	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202861773G>A	uc001gyo.1	-	12	1795	c.1595C>T	c.(1594-1596)TCC>TTC	p.S532F	KLHL12_uc001gym.1_Missense_Mutation_p.P203S|KLHL12_uc001gyn.1_Missense_Mutation_p.P320S|KLHL12_uc010pqc.1_Missense_Mutation_p.S570F	NM_021633	NP_067646	Q53G59	KLH12_HUMAN	kelch-like 12	532	Kelch 6.|Interaction with DVL3.				Wnt receptor signaling pathway		protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.166)			ACTTAGCAGGGAATTACCATC	0.338													14	58					0	0	1	0	0
ADIPOR1	51094	broad.mit.edu	37	1	202914163	202914163	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202914163G>A	uc001gyq.3	-	5	832	c.565C>T	c.(565-567)CTC>TTC	p.L189F	ADIPOR1_uc010pqd.1_Missense_Mutation_p.L113F|ADIPOR1_uc001gyr.3_Intron|ADIPOR1_uc001gys.3_Missense_Mutation_p.L189F	NM_015999	NP_057083	Q96A54	ADR1_HUMAN	adiponectin receptor 1	189	Helical; Name=2; (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane|plasma membrane	hormone binding|protein kinase binding|receptor activity				0			BRCA - Breast invasive adenocarcinoma(75;0.141)			GTGTGAAAGAGCCAGGAGAAG	0.448													13	158					0	0	1	0	0
TMEM183A	92703	broad.mit.edu	37	1	202991991	202991991	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:202991991C>T	uc001gyu.1	+	8	1012	c.954C>T	c.(952-954)ATC>ATT	p.I318I	TMEM183A_uc001gyv.1_RNA|TMEM183A_uc001gyw.1_Silent_p.I317I|TMEM183A_uc001gyx.1_Nonsense_Mutation_p.Q315*|TMEM183A_uc001gyy.2_5'Flank	NM_001079809	NP_001073277	Q8IXX5	T183A_HUMAN	transmembrane protein 183B	318	Helical; (Potential).					integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.18)			AGTTTACTATCAATGTGAGCA	0.448													59	158					0	0	1	0	0
PPFIA4	8497	broad.mit.edu	37	1	203025996	203025996	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203025996C>T	uc001gyz.2	+	6	1400	c.807C>T	c.(805-807)ATC>ATT	p.I269I	PPFIA4_uc009xaj.2_Silent_p.I900I|PPFIA4_uc010pqf.1_Silent_p.I482I|PPFIA4_uc001gza.2_Silent_p.I269I|PPFIA4_uc001gzb.1_5'UTR	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	269					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						GCAAGGGCATCAAGTCGTCCA	0.617													12	35					0	0	1	0	0
PPFIA4	8497	broad.mit.edu	37	1	203029380	203029380	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203029380C>T	uc001gyz.2	+	9	1694	c.1101C>T	c.(1099-1101)GCC>GCT	p.A367A	PPFIA4_uc009xaj.2_Silent_p.A998A|PPFIA4_uc010pqf.1_Silent_p.A580A|PPFIA4_uc001gza.2_Silent_p.A367A|PPFIA4_uc001gzb.1_Silent_p.A62A	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	367	SAM 1.				cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						ATGTGGCAGCCTGCCGGGCCA	0.617													14	41					0	0	1	0	0
MYOG	4656	broad.mit.edu	37	1	203054621	203054621	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203054621C>T	uc001gzd.2	-	1	757	c.469G>A	c.(469-471)GGG>AGG	p.G157R		NM_002479	NP_002470	P15173	MYOG_HUMAN	myogenin	157					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			skin(2)	2						CCACTTACCCCTGGCTGGGGC	0.697													3	18					0	0	1	0	0
MYOG	4656	broad.mit.edu	37	1	203054976	203054976	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203054976C>T	uc001gzd.2	-	1	402	c.114G>A	c.(112-114)ACG>ACA	p.T38T		NM_002479	NP_002470	P15173	MYOG_HUMAN	myogenin	38					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			skin(2)	2						GGGTGAGCTCCGTCCGCTCGT	0.652													20	48					0	0	1	0	0
ADORA1	134	broad.mit.edu	37	1	203134472	203134472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203134472C>T	uc001gze.1	+	4	858	c.425C>T	c.(424-426)CCT>CTT	p.P142L	FMOD_uc010pqi.1_Intron|ADORA1_uc001gzf.1_Missense_Mutation_p.P142L|ADORA1_uc010pqg.1_Missense_Mutation_p.P74L|ADORA1_uc009xak.1_Silent_p.P67P|ADORA1_uc010pqh.1_Missense_Mutation_p.P175L	NM_000674	NP_000665	P30542	AA1R_HUMAN	adenosine A1 receptor	142	Helical; Name=4; (Potential).				induction of apoptosis by extracellular signals|inflammatory response|nervous system development|phagocytosis	integral to plasma membrane				large_intestine(1)	1					Aminophylline(DB01223)|Caffeine(DB00201)|Defibrotide(DB04932)|Gabapentin(DB00996)|Imipramine(DB00458)|Pegademase bovine(DB00061)|Theophylline(DB00277)	GGACTGACCCCTATGTTTGGC	0.647													23	31					0	0	1	0	0
MYBPH	4608	broad.mit.edu	37	1	203144855	203144855	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203144855G>A	uc001gzh.1	-	1	88	c.29C>T	c.(28-30)CCT>CTT	p.P10L	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	10					cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		ACTGCAGGCAGGGCCCTCGGA	0.627													39	86					0	0	1	0	0
CHIT1	1118	broad.mit.edu	37	1	203188883	203188883	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203188883G>A	uc001gzn.2	-	8	920	c.824C>T	c.(823-825)TCC>TTC	p.S275F	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_RNA|CHIT1_uc009xal.1_Missense_Mutation_p.S66F|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Missense_Mutation_p.S266F	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	275					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						GTCTGATGAGGAGGCCAGTGT	0.602													34	60					0	0	1	0	0
CHIT1	1118	broad.mit.edu	37	1	203194880	203194880	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203194880G>A	uc001gzn.2	-	3	270	c.174C>T	c.(172-174)TTC>TTT	p.F58F	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_RNA|CHIT1_uc009xal.1_5'Flank|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Silent_p.F68F	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	58					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						TCATGCCAGCGAAGGCGTAGA	0.572													7	84					0	0	1	0	0
PRELP	5549	broad.mit.edu	37	1	203452401	203452401	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203452401C>T	uc001gzs.2	+	2	289	c.89C>T	c.(88-90)ACT>ATT	p.T30I	PRELP_uc001gzt.2_Missense_Mutation_p.T30I	NM_002725	NP_002716	P51888	PRELP_HUMAN	proline arginine-rich end leucine-rich repeat	30					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(1)|central_nervous_system(1)|pancreas(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.109)			AGACCCGGGACTGGGCCCGGG	0.647													27	92					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203667416	203667416	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203667416C>T	uc001gzw.2	+	3	1209	c.325C>T	c.(325-327)CTG>TTG	p.L109L	ATP2B4_uc001gzv.2_Silent_p.L109L|ATP2B4_uc009xaq.2_Silent_p.L109L	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	109	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GCTTATCATCCTGGAGATTGC	0.483													32	104					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203676168	203676168	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203676168C>T	uc001gzw.2	+	9	2015	c.1131C>T	c.(1129-1131)ATC>ATT	p.I377I	ATP2B4_uc001gzv.2_Silent_p.I377I|ATP2B4_uc009xaq.2_Silent_p.I377I	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	377	Extracellular (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CGGTTTTCATCCTGATTCTAT	0.468													10	32					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203680140	203680140	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203680140C>T	uc001gzw.2	+	12	2819	c.1935C>T	c.(1933-1935)TTC>TTT	p.F645F	ATP2B4_uc001gzv.2_Silent_p.F645F|ATP2B4_uc009xaq.2_Silent_p.F645F	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	645	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ACCGGGACTTCGATGACACAG	0.532													36	94					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203681213	203681213	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203681213C>T	uc001gzw.2	+	13	3041	c.2157C>T	c.(2155-2157)TTC>TTT	p.F719F	ATP2B4_uc001gzv.2_Silent_p.F719F|ATP2B4_uc009xaq.2_Silent_p.F719F	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	719	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GGGATGACTTCCTGTGCTTAG	0.532													27	91					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203691724	203691724	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203691724C>G	uc001gzw.2	+	18	3815	c.2931C>G	c.(2929-2931)AAC>AAG	p.N977K	ATP2B4_uc001gzv.2_Missense_Mutation_p.N977K|ATP2B4_uc009xaq.2_Missense_Mutation_p.N977K|ATP2B4_uc001gzx.2_Missense_Mutation_p.N8K|ATP2B4_uc009xar.2_Missense_Mutation_p.N8K	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	977	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ATGAAATCAACTCCCGAAAGA	0.463													22	90					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203708726	203708726	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203708726C>T	uc001gzw.2	+	21	4246	c.3362C>T	c.(3361-3363)CCC>CTC	p.P1121L	ATP2B4_uc001gzv.2_3'UTR|ATP2B4_uc001gzx.2_Missense_Mutation_p.P188L|ATP2B4_uc009xar.2_3'UTR	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	1157	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ATTCAGAAACCCTACAACCAA	0.483													33	92					0	0	1	0	0
LAX1	54900	broad.mit.edu	37	1	203743176	203743176	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203743176G>A	uc001haa.2	+	5	974	c.564G>A	c.(562-564)GAG>GAA	p.E188E	LAX1_uc010pql.1_Silent_p.E172E|LAX1_uc001hab.2_Silent_p.E112E	NM_017773	NP_060243	Q8IWV1	LAX1_HUMAN	lymphocyte transmembrane adaptor 1 isoform a	188	Cytoplasmic (Potential).				B cell activation|immune response|inactivation of MAPK activity|intracellular signal transduction|negative regulation of T cell activation	Golgi apparatus|integral to membrane|plasma membrane	protein kinase binding|SH2 domain binding			central_nervous_system(2)	2	all_cancers(21;0.0915)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TTTCTTCAGAGGATTCGCATG	0.493													36	79					0	0	1	0	0
ZC3H11A	9877	broad.mit.edu	37	1	203798606	203798606	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203798606C>T	uc001hac.2	+	8	942	c.326C>T	c.(325-327)CCA>CTA	p.P109L	ZC3H11A_uc001had.2_Missense_Mutation_p.P109L|ZC3H11A_uc001hae.2_Missense_Mutation_p.P109L|ZC3H11A_uc001haf.2_Missense_Mutation_p.P109L|ZC3H11A_uc010pqm.1_Missense_Mutation_p.P55L|ZC3H11A_uc001hag.1_Missense_Mutation_p.P109L	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	109							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CCTGAGTCACCAGAAGAGGAA	0.448													31	80					0	0	1	0	0
ZC3H11A	9877	broad.mit.edu	37	1	203819693	203819693	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:203819693C>T	uc001hac.2	+	18	2606	c.1990C>T	c.(1990-1992)CCC>TCC	p.P664S	ZC3H11A_uc001had.2_Missense_Mutation_p.P664S|ZC3H11A_uc001hae.2_Missense_Mutation_p.P664S|ZC3H11A_uc001haf.2_Missense_Mutation_p.P664S|ZC3H11A_uc010pqm.1_Missense_Mutation_p.P610S	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	664							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TGTGTCATCCCCCAAATTGGC	0.488													38	124					0	0	1	0	0
SOX13	9580	broad.mit.edu	37	1	204086786	204086786	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204086786C>T	uc001ham.2	+	7	1321	c.726C>T	c.(724-726)ACC>ACT	p.T242T	SOX13_uc001hal.2_Silent_p.T242T|SOX13_uc010pqp.1_Silent_p.T241T|SOX13_uc010pqq.1_Silent_p.T109T	NM_005686	NP_005677	Q9UN79	SOX13_HUMAN	SRY-box 13	242	Pro-rich.				anatomical structure morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2	all_cancers(21;0.0754)|Breast(84;0.116)|all_epithelial(62;0.189)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)			TGCCTGTCACCCCTGACTCCC	0.587													10	20					0	0	1	0	0
REN	5972	broad.mit.edu	37	1	204124159	204124159	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204124159G>A	uc001haq.2	-	10	1250	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F	ETNK2_uc001hao.3_5'Flank|ETNK2_uc001han.3_5'Flank|ETNK2_uc010pqs.1_5'Flank|ETNK2_uc010pqt.1_5'Flank	NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	402					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	GGGCCAAGGCGAAGCCAATGC	0.632													18	49					0	0	1	0	0
REN	5972	broad.mit.edu	37	1	204124271	204124271	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204124271G>A	uc001haq.2	-	10	1138	c.1094C>T	c.(1093-1095)GCC>GTC	p.A365V	ETNK2_uc001hao.3_5'Flank|ETNK2_uc001han.3_5'Flank|ETNK2_uc010pqs.1_5'Flank|ETNK2_uc010pqt.1_5'Flank	NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	365					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	GGCGTGGATGGCCAGTGTGCA	0.552													28	57					0	0	1	0	0
REN	5972	broad.mit.edu	37	1	204129793	204129793	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204129793G>A	uc001haq.2	-	4	431	c.387C>T	c.(385-387)CTC>CTT	p.L129L		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	129					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	AAGCATCGAAGAGCTTGTGAT	0.552													31	93					0	0	1	0	0
KISS1	3814	broad.mit.edu	37	1	204159666	204159666	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204159666G>A	uc001har.2	-	3	517	c.363C>T	c.(361-363)TTC>TTT	p.F121F		NM_002256	NP_002247	Q15726	KISS1_HUMAN	KiSS-1 metastasis-suppressor	121	Essential for receptor binding and receptor activation.				cytoskeleton organization	extracellular region	protein binding			ovary(1)	1	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)	Breast(1374;9.42e-05)	KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.069)|Kidney(21;0.0934)|Epithelial(59;0.239)	Colorectal(1306;0.0129)		CCCGCTTGCCGAAGCGCAGGC	0.692													9	8					0	0	1	0	0
GOLT1A	127845	broad.mit.edu	37	1	204172074	204172074	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204172074G>A	uc001has.1	-	2	253	c.67C>T	c.(67-69)CTC>TTC	p.L23F	GOLT1A_uc001hat.1_Missense_Mutation_p.L23F	NM_198447	NP_940849	Q6ZVE7	GOT1A_HUMAN	golgi transport 1 homolog A	23	Helical; Name=1; (Potential).				protein transport|vesicle-mediated transport	Golgi membrane|integral to membrane					0	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.244)			GTTCCAAAGAGGATGAAGAAG	0.567													18	51					0	0	1	0	0
LRRN2	10446	broad.mit.edu	37	1	204587068	204587068	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204587068G>T	uc001hbe.1	-	3	2441	c.2053C>A	c.(2053-2055)CCC>ACC	p.P685T	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.P685T|LRRN2_uc009xbf.1_Missense_Mutation_p.P685T|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	685	Cytoplasmic (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			AGGACGAGGGGAGCAGACACA	0.617													39	116					1.66425e-11	1.67035e-11	1	1	0
LRRN2	10446	broad.mit.edu	37	1	204587210	204587210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204587210G>A	uc001hbe.1	-	3	2299	c.1911C>T	c.(1909-1911)CTC>CTT	p.L637L	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Silent_p.L637L|LRRN2_uc009xbf.1_Silent_p.L637L|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	637	Helical; (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GAAGGACAGCGAGAGCCAGGA	0.647													12	23					0	0	1	0	0
LRRN2	10446	broad.mit.edu	37	1	204588011	204588011	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204588011G>A	uc001hbe.1	-	3	1498	c.1110C>T	c.(1108-1110)CCC>CCT	p.P370P	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Silent_p.P370P|LRRN2_uc009xbf.1_Silent_p.P370P|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	370	Extracellular (Potential).|LRRCT.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			CACAGCGGATGGGGTTGCCGT	0.637													25	69					0	0	1	0	0
LRRN2	10446	broad.mit.edu	37	1	204588113	204588113	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204588113C>T	uc001hbe.1	-	3	1396	c.1008G>A	c.(1006-1008)CAG>CAA	p.Q336Q	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Silent_p.Q336Q|LRRN2_uc009xbf.1_Silent_p.Q336Q|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	336	Extracellular (Potential).|LRR 12.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GGGTCTCCATCTGGGGCAGGT	0.612													6	26					0	0	1	0	0
LRRN2	10446	broad.mit.edu	37	1	204588393	204588393	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204588393G>A	uc001hbe.1	-	3	1116	c.728C>T	c.(727-729)TCC>TTC	p.S243F	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.S243F|LRRN2_uc009xbf.1_Missense_Mutation_p.S243F|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	243	Extracellular (Potential).|LRR 8.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GTCATAGAAGGAGAGGCTCTC	0.642													15	59					0	0	1	0	0
LRRN2	10446	broad.mit.edu	37	1	204589039	204589039	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204589039G>A	uc001hbe.1	-	3	470	c.82C>T	c.(82-84)CCC>TCC	p.P28S	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.P28S|LRRN2_uc009xbf.1_Missense_Mutation_p.P28S|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	28	Extracellular (Potential).|LRRNT.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GGGGGGCAGGGAACATGCCAG	0.647													6	26					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204913519	204913519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204913519G>A	uc001hbj.2	+	3	404	c.76G>A	c.(76-78)GAA>AAA	p.E26K	NFASC_uc001hbh.2_Missense_Mutation_p.E26K|NFASC_uc010pqz.1_Missense_Mutation_p.E26K|NFASC_uc010pra.1_Missense_Mutation_p.E26K|NFASC_uc001hbi.2_Missense_Mutation_p.E26K|NFASC_uc009xbg.1_Missense_Mutation_p.E99K|NFASC_uc010prb.1_Missense_Mutation_p.E26K|NFASC_uc010prc.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	26	Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CGGAGCCATCGAAATTCCTAT	0.597													7	20					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204923364	204923365	+	Silent	DNP	CC	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204923364_204923365CC>TA	uc001hbj.2	+	6	592_593	c.264_265CC>TA	c.(262-267)CCCCGG>CCTAGG	p.88_89PR>PR	NFASC_uc001hbh.2_Silent_p.88_89PR>PR|NFASC_uc010pqz.1_Silent_p.82_83PR>PR|NFASC_uc010pra.1_Silent_p.82_83PR>PR|NFASC_uc001hbi.2_Silent_p.82_83PR>PR|NFASC_uc009xbg.1_Silent_p.155_156PR>PR|NFASC_uc010prb.1_Silent_p.82_83PR>PR|NFASC_uc010prc.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	88_89	Ig-like C2-type 1.|Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CCAAGGACCCCCGGGTGTCCAT	0.604													6	59					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204923962	204923962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204923962C>T	uc001hbj.2	+	7	746	c.418C>T	c.(418-420)CCT>TCT	p.P140S	NFASC_uc001hbh.2_Missense_Mutation_p.P140S|NFASC_uc010pqz.1_Missense_Mutation_p.P134S|NFASC_uc010pra.1_Missense_Mutation_p.P134S|NFASC_uc001hbi.2_Missense_Mutation_p.P134S|NFASC_uc009xbg.1_Missense_Mutation_p.P207S|NFASC_uc010prb.1_Missense_Mutation_p.P134S|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	140	Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TCCAGAATCTCCTCTGTGGCC	0.592													46	136					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204924014	204924014	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204924014C>T	uc001hbj.2	+	7	798	c.470C>T	c.(469-471)CCT>CTT	p.P157L	NFASC_uc001hbh.2_Missense_Mutation_p.P157L|NFASC_uc010pqz.1_Missense_Mutation_p.P151L|NFASC_uc010pra.1_Missense_Mutation_p.P151L|NFASC_uc001hbi.2_Missense_Mutation_p.P151L|NFASC_uc009xbg.1_Missense_Mutation_p.P224L|NFASC_uc010prb.1_Missense_Mutation_p.P151L|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	157	Extracellular (Potential).|Ig-like C2-type 2.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GAGGGCGCTCCTTTGACGCTC	0.552													81	203					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204926948	204926948	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204926948C>T	uc001hbj.2	+	8	1028	c.700C>T	c.(700-702)CTC>TTC	p.L234F	NFASC_uc001hbh.2_Missense_Mutation_p.L234F|NFASC_uc010pqz.1_Missense_Mutation_p.L228F|NFASC_uc010pra.1_Missense_Mutation_p.L228F|NFASC_uc001hbi.2_Missense_Mutation_p.L228F|NFASC_uc009xbg.1_Missense_Mutation_p.L301F|NFASC_uc010prb.1_Missense_Mutation_p.L228F|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_Missense_Mutation_p.L55F	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	234	Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CCTCAAGGTCCTCACCAGTAA	0.577													39	82					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204937936	204937936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204937936G>A	uc001hbj.2	+	10	1157	c.829G>A	c.(829-831)GAC>AAC	p.D277N	NFASC_uc001hbh.2_Missense_Mutation_p.D277N|NFASC_uc010pqz.1_Missense_Mutation_p.D271N|NFASC_uc010pra.1_Missense_Mutation_p.D288N|NFASC_uc001hbi.2_Missense_Mutation_p.D288N|NFASC_uc009xbg.1_Missense_Mutation_p.D361N|NFASC_uc010prb.1_Missense_Mutation_p.D288N|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_Missense_Mutation_p.D98N	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	277	Extracellular (Potential).|Ig-like C2-type 3.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CCCAACACCAGACATCGCATG	0.493													10	28					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204939816	204939816	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204939816G>A	uc001hbj.2	+	11	1404	c.1076G>A	c.(1075-1077)CGA>CAA	p.R359Q	NFASC_uc001hbh.2_Missense_Mutation_p.R359Q|NFASC_uc010pqz.1_Missense_Mutation_p.R353Q|NFASC_uc010pra.1_Missense_Mutation_p.R370Q|NFASC_uc001hbi.2_Missense_Mutation_p.R370Q|NFASC_uc009xbg.1_Missense_Mutation_p.R443Q|NFASC_uc010prb.1_Missense_Mutation_p.R370Q|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_Missense_Mutation_p.R180Q	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	359	Extracellular (Potential).|Ig-like C2-type 4.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CTGGTGTGTCGAGCCAATGGA	0.542													21	68					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204939824	204939824	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204939824G>A	uc001hbj.2	+	11	1412	c.1084G>A	c.(1084-1086)GGA>AGA	p.G362R	NFASC_uc001hbh.2_Missense_Mutation_p.G362R|NFASC_uc010pqz.1_Missense_Mutation_p.G356R|NFASC_uc010pra.1_Missense_Mutation_p.G373R|NFASC_uc001hbi.2_Missense_Mutation_p.G373R|NFASC_uc009xbg.1_Missense_Mutation_p.G446R|NFASC_uc010prb.1_Missense_Mutation_p.G373R|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_Missense_Mutation_p.G183R	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	362	Extracellular (Potential).|Ig-like C2-type 4.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TCGAGCCAATGGAAACCCCAA	0.532													30	59					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204943415	204943415	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204943415G>A	uc001hbj.2	+	13	1716	c.1388G>A	c.(1387-1389)CGA>CAA	p.R463Q	NFASC_uc001hbh.2_Missense_Mutation_p.R463Q|NFASC_uc010pqz.1_Missense_Mutation_p.R457Q|NFASC_uc010pra.1_Missense_Mutation_p.R474Q|NFASC_uc001hbi.2_Missense_Mutation_p.R474Q|NFASC_uc009xbg.1_Missense_Mutation_p.R547Q|NFASC_uc010prb.1_Missense_Mutation_p.R474Q|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_Missense_Mutation_p.R284Q	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	463	Extracellular (Potential).|Ig-like C2-type 5.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CCCACACTGCGATGGTAAGTT	0.567													7	19					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204944445	204944446	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204944445_204944446GG>AA	uc001hbj.2	+	15	1933_1934	c.1605_1606GG>AA	c.(1603-1608)AGGGGC>AGAAGC	p.G536S	NFASC_uc001hbh.2_Missense_Mutation_p.G536S|NFASC_uc010pqz.1_Missense_Mutation_p.G530S|NFASC_uc010pra.1_Missense_Mutation_p.G547S|NFASC_uc001hbi.2_Missense_Mutation_p.G547S|NFASC_uc010prb.1_Missense_Mutation_p.G547S|NFASC_uc010prc.1_Missense_Mutation_p.G103S|NFASC_uc001hbk.1_Missense_Mutation_p.G357S	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	536	Extracellular (Potential).|Ig-like C2-type 6.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TGGCCAGAAGGGGCACCACGGT	0.624											OREG0014142	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	47	104					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204946817	204946817	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204946817G>A	uc001hbj.2	+	17	2168	c.1840G>A	c.(1840-1842)GCC>ACC	p.A614T	NFASC_uc010pra.1_Intron|NFASC_uc001hbi.2_Intron|NFASC_uc010prb.1_Missense_Mutation_p.A625T|NFASC_uc010prc.1_Missense_Mutation_p.A181T|NFASC_uc001hbk.1_Intron	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	614	Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			AGCTGATCAGGCCACTCCAAC	0.537													11	34					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204948579	204948579	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204948579C>T	uc001hbj.2	+	19	2396	c.2068C>T	c.(2068-2070)CTC>TTC	p.L690F	NFASC_uc010pra.1_Missense_Mutation_p.L686F|NFASC_uc001hbi.2_Missense_Mutation_p.L686F|NFASC_uc010prb.1_Missense_Mutation_p.L701F|NFASC_uc010prc.1_Missense_Mutation_p.L257F|NFASC_uc001hbk.1_Missense_Mutation_p.L496F|NFASC_uc001hbl.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	690	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CTCAGCCGTCCTCCGGCTGTC	0.587													36	150					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204950989	204950989	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204950989G>A	uc001hbj.2	+	21	2639	c.2311G>A	c.(2311-2313)GAG>AAG	p.E771K	NFASC_uc010pra.1_Missense_Mutation_p.E767K|NFASC_uc001hbi.2_Missense_Mutation_p.E767K|NFASC_uc010prb.1_Missense_Mutation_p.E782K|NFASC_uc010prc.1_Missense_Mutation_p.E338K|NFASC_uc001hbk.1_Missense_Mutation_p.E577K|NFASC_uc001hbl.1_Missense_Mutation_p.E21K	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	771	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GAGGCGGAGAGAGACTCGAGA	0.622													18	53					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204951123	204951123	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204951123C>T	uc001hbj.2	+	21	2773	c.2445C>T	c.(2443-2445)TCC>TCT	p.S815S	NFASC_uc010pra.1_Silent_p.S811S|NFASC_uc001hbi.2_Silent_p.S811S|NFASC_uc010prb.1_Silent_p.S826S|NFASC_uc010prc.1_Silent_p.S382S|NFASC_uc001hbk.1_Silent_p.S621S|NFASC_uc001hbl.1_Silent_p.S65S	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	815	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			AGCCAGAGTCCGTCATCGGTT	0.622													5	9					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204981969	204981969	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:204981969G>A	uc001hbj.2	+	29	3794	c.3466G>A	c.(3466-3468)GAA>AAA	p.E1156K	NFASC_uc010pra.1_Missense_Mutation_p.E1090K|NFASC_uc001hbi.2_Missense_Mutation_p.E1085K|NFASC_uc010prb.1_Missense_Mutation_p.E1105K|NFASC_uc010prc.1_Missense_Mutation_p.E656K|NFASC_uc001hbl.1_Missense_Mutation_p.E232K|NFASC_uc001hbm.1_Missense_Mutation_p.E179K|NFASC_uc009xbh.1_Silent_p.R10R|NFASC_uc001hbo.1_Silent_p.R31R	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	1263	Cytoplasmic (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			AGACCCCAAGGAAGAGGATGG	0.542													33	93					0	0	1	0	0
CNTN2	6900	broad.mit.edu	37	1	205033876	205033876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205033876G>A	uc001hbr.2	+	12	1786	c.1517G>A	c.(1516-1518)CGA>CAA	p.R506Q	CNTN2_uc001hbq.1_Missense_Mutation_p.R397Q|CNTN2_uc001hbs.2_Missense_Mutation_p.R294Q	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	506					axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CTATCTGTGCGAGGTGAGGGC	0.537													42	98					0	0	1	0	0
CNTN2	6900	broad.mit.edu	37	1	205038639	205038639	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205038639G>A	uc001hbr.2	+	17	2415	c.2146G>A	c.(2146-2148)GGA>AGA	p.G716R	CNTN2_uc001hbq.1_Missense_Mutation_p.G607R|CNTN2_uc001hbs.2_Missense_Mutation_p.G504R	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	716	Fibronectin type-III 2.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GGCACCCTCAGGACTCAGCGG	0.597													10	31					0	0	1	0	0
CNTN2	6900	broad.mit.edu	37	1	205042351	205042351	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205042351C>T	uc001hbr.2	+	22	3269	c.3000C>T	c.(2998-3000)ATC>ATT	p.I1000I	CNTN2_uc001hbs.2_Silent_p.I788I	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	1000	Fibronectin type-III 4.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			AAGTCCACATCGTGAGGAATG	0.567													22	64					0	0	1	0	0
RBBP5	5929	broad.mit.edu	37	1	205068928	205068928	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205068928G>A	uc001hbu.1	-	9	1049	c.919C>T	c.(919-921)CGA>TGA	p.R307*	RBBP5_uc010prd.1_Nonsense_Mutation_p.R342*|RBBP5_uc001hbv.1_Nonsense_Mutation_p.R307*|RBBP5_uc010pre.1_Nonsense_Mutation_p.R174*	NM_005057	NP_005048	Q15291	RBBP5_HUMAN	retinoblastoma binding protein 5	307	WD 6.				histone H3-K4 methylation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription, DNA-dependent	MLL1 complex|Set1C/COMPASS complex	methylated histone residue binding|transcription regulatory region DNA binding			lung(1)	1	Breast(84;0.0505)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			ATGATGGGTCGAACAGGATGC	0.363													50	135					0	0	1	0	0
RBBP5	5929	broad.mit.edu	37	1	205069166	205069166	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205069166G>A	uc001hbu.1	-	8	909	c.779C>T	c.(778-780)TCT>TTT	p.S260F	RBBP5_uc010prd.1_Missense_Mutation_p.S295F|RBBP5_uc001hbv.1_Missense_Mutation_p.S260F|RBBP5_uc010pre.1_Missense_Mutation_p.S127F	NM_005057	NP_005048	Q15291	RBBP5_HUMAN	retinoblastoma binding protein 5	260	WD 5.				histone H3-K4 methylation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription, DNA-dependent	MLL1 complex|Set1C/COMPASS complex	methylated histone residue binding|transcription regulatory region DNA binding			lung(1)	1	Breast(84;0.0505)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			CCCATCCCCAGAGAAACAACA	0.507													25	75					0	0	1	0	0
DSTYK	25778	broad.mit.edu	37	1	205132913	205132913	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205132913G>A	uc001hbw.2	-	4	1559	c.1495C>T	c.(1495-1497)CTG>TTG	p.L499L	DSTYK_uc001hbx.2_Silent_p.L499L|DSTYK_uc001hby.1_Intron	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	499						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						AGGCTCTGCAGACATCGTTCC	0.453													10	42					0	0	1	0	0
DSTYK	25778	broad.mit.edu	37	1	205133001	205133001	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205133001G>A	uc001hbw.2	-	4	1471	c.1407C>T	c.(1405-1407)ATC>ATT	p.I469I	DSTYK_uc001hbx.2_Silent_p.I469I|DSTYK_uc001hby.1_Intron	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	469						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						TAAGTCGGGAGATGATGAGTT	0.507													15	107					0	0	1	0	0
TMCC2	9911	broad.mit.edu	37	1	205197795	205197796	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205197795_205197796CC>TT	uc001hbz.1	+	2	547_548	c.103_104CC>TT	c.(103-105)CCT>TTT	p.P35F	TMCC2_uc010prf.1_5'Flank	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	35						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GGACCTCCGGCCTGGGGAGACC	0.673													17	27					0	0	1	0	0
NUAK2	81788	broad.mit.edu	37	1	205272864	205272864	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205272864G>A	uc001hce.2	-	7	1728	c.1601C>T	c.(1600-1602)GCC>GTC	p.A534V		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	534					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GCTGGCCCGGGCCAGGGGGCG	0.652													31	55					0	0	1	0	0
NUAK2	81788	broad.mit.edu	37	1	205273193	205273193	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205273193C>T	uc001hce.2	-	7	1399	c.1272G>A	c.(1270-1272)GAG>GAA	p.E424E		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	424					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CCGGAGGGTCCTCCTGTACCC	0.627													47	66					0	0	1	0	0
NUAK2	81788	broad.mit.edu	37	1	205273195	205273195	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205273195C>T	uc001hce.2	-	7	1397	c.1270G>A	c.(1270-1272)GAG>AAG	p.E424K		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	424					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GGAGGGTCCTCCTGTACCCCT	0.627													27	82					0	0	1	0	0
NUAK2	81788	broad.mit.edu	37	1	205273430	205273430	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205273430C>T	uc001hce.2	-	7	1162	c.1035G>A	c.(1033-1035)GAG>GAA	p.E345E		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	345					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			TGGCCCCATTCTCCAGGAGGG	0.667													20	27					0	0	1	0	0
KLHDC8A	55220	broad.mit.edu	37	1	205306568	205306568	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205306568G>A	uc001hcf.1	-	6	1580	c.1012C>T	c.(1012-1014)CTG>TTG	p.L338L	KLHDC8A_uc010prg.1_Silent_p.L225L|KLHDC8A_uc001hcg.1_Silent_p.L338L	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	338										ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GCGTCACTCAGACCCTGGTTG	0.577													32	112					0	0	1	0	0
KLHDC8A	55220	broad.mit.edu	37	1	205308499	205308499	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205308499C>T	uc001hcf.1	-	4	1148	c.580G>A	c.(580-582)GTC>ATC	p.V194I	KLHDC8A_uc010prg.1_Missense_Mutation_p.V81I|KLHDC8A_uc001hcg.1_Missense_Mutation_p.V194I	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	194	Kelch 5.									ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			ATGTCAAAGACCTCGAAAGCG	0.567													5	29					0	0	1	0	0
LEMD1	93273	broad.mit.edu	37	1	205350899	205350899	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205350899C>T	uc001hcj.1	-	6	535	c.433G>A	c.(433-435)GAG>AAG	p.E145K	LEMD1_uc001hci.1_Silent_p.S97S|LEMD1_uc001hck.1_RNA|LEMD1_uc001hcl.1_Missense_Mutation_p.E104K|LEMD1_uc001hcm.1_RNA|LEMD1_uc001hcn.1_RNA|uc001hch.1_Intron			Q68G75	LEMD1_HUMAN	RecName: Full=LEM domain-containing protein 1;          Short=LEMP-1; AltName: Full=Cancer/testis antigen 50;          Short=CT50;	145						integral to membrane|nuclear envelope					0	Breast(84;0.247)		BRCA - Breast invasive adenocarcinoma(75;0.0938)			CTCCAGCTCTCGATAGTCTGG	0.478													69	162					0	0	1	0	0
LEMD1	93273	broad.mit.edu	37	1	205388426	205388426	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205388426G>A	uc001hcj.1	-	3	239	c.137C>T	c.(136-138)CCC>CTC	p.P46L	LEMD1_uc001hci.1_Missense_Mutation_p.P46L|LEMD1_uc001hck.1_RNA|LEMD1_uc001hcl.1_Intron|LEMD1_uc001hcm.1_Intron|LEMD1_uc001hcn.1_Intron			Q68G75	LEMD1_HUMAN	RecName: Full=LEM domain-containing protein 1;          Short=LEMP-1; AltName: Full=Cancer/testis antigen 50;          Short=CT50;	46						integral to membrane|nuclear envelope					0	Breast(84;0.247)		BRCA - Breast invasive adenocarcinoma(75;0.0938)			TGGTGCACAGGGAGGTGAGAC	0.448													49	117					0	0	1	0	0
CDK18	5129	broad.mit.edu	37	1	205498689	205498689	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205498689C>T	uc001hcr.2	+	13	1528	c.1309C>T	c.(1309-1311)CTG>TTG	p.L437L	CDK18_uc001hcp.2_Silent_p.L407L|CDK18_uc001hcq.2_Silent_p.L407L|CDK18_uc010prj.1_Silent_p.L318L|CDK18_uc001hcs.2_Silent_p.L318L|CDK18_uc009xbm.1_Silent_p.L332L|CDK18_uc001hct.2_RNA	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	405	Protein kinase.			L -> V (in Ref. 6; CAA47005).			ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						CAGCCTGCTCCTGGTGAGTGT	0.667													12	44					0	0	1	0	0
MFSD4	148808	broad.mit.edu	37	1	205549071	205549071	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205549071C>T	uc001hcv.3	+	2	509	c.423C>T	c.(421-423)TTC>TTT	p.F141F	MFSD4_uc010prk.1_Silent_p.F141F|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Silent_p.F86F	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	141	Helical; (Potential).				transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			CGGCCGTCTTCCTCCAGGTAA	0.672													12	35					0	0	1	0	0
MFSD4	148808	broad.mit.edu	37	1	205549800	205549800	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205549800C>T	uc001hcv.3	+	3	527	c.441C>T	c.(439-441)TTC>TTT	p.F147F	MFSD4_uc010prk.1_Intron|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Silent_p.F92F	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	147	Helical; (Potential).				transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			TGCTCCATTTCTTCGTGGGCT	0.637													15	168					0	0	1	0	0
MFSD4	148808	broad.mit.edu	37	1	205554035	205554035	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205554035G>A	uc001hcv.3	+	5	977	c.891G>A	c.(889-891)AGG>AGA	p.R297R	MFSD4_uc010prk.1_Silent_p.R210R|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Silent_p.R242R	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	297					transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			GCTGCCAAAGGAAGAACCTCA	0.587											OREG0014158	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	50	138					0	0	1	0	0
ELK4	2005	broad.mit.edu	37	1	205589256	205589256	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205589256G>A	uc001hcy.1	-	3	2168	c.918C>T	c.(916-918)GTC>GTT	p.V306V	ELK4_uc001hcz.2_Silent_p.V306V	NM_001973	NP_001964	P28324	ELK4_HUMAN	ELK4 protein isoform a	306						cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity				0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			TTTCTAGCAAGACTGAATCCT	0.458			T	SLC45A3	prostate								48	123					0	0	1	0	0
ELK4	2005	broad.mit.edu	37	1	205592886	205592886	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205592886G>A	uc001hcy.1	-	2	1375	c.125C>T	c.(124-126)GCT>GTT	p.A42V	ELK4_uc001hcz.2_Missense_Mutation_p.A42V|SLC45A3_uc010prn.1_Missense_Mutation_p.A131V|SLC45A3_uc010pro.1_Missense_Mutation_p.A315V|SLC45A3_uc010prp.1_RNA|ELK4_uc010prq.1_RNA	NM_001973	NP_001964	P28324	ELK4_HUMAN	ELK4 protein isoform a	42	ETS.					cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity				0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			CCAGAGACGAGCCACCTCTTC	0.468			T	SLC45A3	prostate								71	161					0	0	1	0	0
SLC45A3	85414	broad.mit.edu	37	1	205632186	205632186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205632186G>A	uc001hda.1	-	3	1072	c.733C>T	c.(733-735)CGG>TGG	p.R245W	SLC45A3_uc010prn.1_5'Flank|SLC45A3_uc010pro.1_Missense_Mutation_p.R79W|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	245					transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			AAGCGGGCCCGGCATGGACAG	0.716			T	ETV1|ETV5|ELK4|ERG	prostate 								11	22					0	0	1	0	0
SLC45A3	85414	broad.mit.edu	37	1	205632659	205632659	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205632659G>A	uc001hda.1	-	3	599	c.260C>T	c.(259-261)CCC>CTC	p.P87L	SLC45A3_uc010prn.1_5'Flank|SLC45A3_uc010pro.1_5'UTR|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	87					transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			CCAGATGAAGGGCCGGCGGCG	0.662			T	ETV1|ETV5|ELK4|ERG	prostate 								19	44					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205890756	205890756	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205890756G>A	uc001hdq.2	-	17	2107	c.1993C>T	c.(1993-1995)CTC>TTC	p.L665F	SLC26A9_uc001hdo.2_Missense_Mutation_p.L333F|SLC26A9_uc001hdp.2_Missense_Mutation_p.L665F	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	665	STAS.					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			TCCAGGATGAGGGTGTGGAAG	0.647													5	19					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205896725	205896725	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205896725G>A	uc001hdq.2	-	10	1224	c.1110C>T	c.(1108-1110)ATC>ATT	p.I370I	SLC26A9_uc001hdo.2_Silent_p.I38I|SLC26A9_uc001hdp.2_Silent_p.I370I	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	370						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			AGCCGAGAGCGATCATCTCCT	0.552													10	30					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205899140	205899140	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:205899140G>A	uc001hdq.2	-	6	711	c.597C>T	c.(595-597)CTC>CTT	p.L199L	SLC26A9_uc001hdo.2_5'Flank|SLC26A9_uc001hdp.2_Silent_p.L199L	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	199	Helical; (Potential).					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			AGGACTCGGAGAGGTAGATGG	0.567													12	37					0	0	1	0	0
AVPR1B	553	broad.mit.edu	37	1	206224524	206224524	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206224524C>T	uc001hds.2	+	1	242	c.84C>T	c.(82-84)GGC>GGT	p.G28G		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	28	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	CCTGGCTGGGCCGGGATGAGG	0.672													88	257					0	0	1	0	0
AVPR1B	553	broad.mit.edu	37	1	206224750	206224750	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206224750G>A	uc001hds.2	+	1	468	c.310G>A	c.(310-312)GAC>AAC	p.D104N		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	104	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	CCAGGGCCCCGACCTCCTGTG	0.632													21	53					0	0	1	0	0
AVPR1B	553	broad.mit.edu	37	1	206225182	206225182	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206225182G>A	uc001hds.2	+	1	900	c.742G>A	c.(742-744)GAC>AAC	p.D248N		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	248	Cytoplasmic (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	GAGGACTTGGGACAGGCCCTC	0.592													35	84					0	0	1	0	0
AVPR1B	553	broad.mit.edu	37	1	206225329	206225329	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206225329T>A	uc001hds.2	+	1	1047	c.889T>A	c.(889-891)TTC>ATC	p.F297I		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	297	Helical; Name=6; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	CTGGGCTCCCTTCTTCAGTGT	0.552													31	69					0	0	1	0	0
CTSE	1510	broad.mit.edu	37	1	206320265	206320265	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206320265C>T	uc001hdu.2	+	4	526	c.408C>T	c.(406-408)TCC>TCT	p.S136S	CTSE_uc001hdv.2_Silent_p.S136S|CTSE_uc010prs.1_Silent_p.S61S	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	136					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			AATCTTTCTCCATTCAGTATG	0.517													26	65					0	0	1	0	0
CTSE	1510	broad.mit.edu	37	1	206331107	206331108	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206331107_206331108GG>AA	uc001hdu.2	+	9	1231_1232	c.1113_1114GG>AA	c.(1111-1116)GGGGAT>GGAAAT	p.D372N	CTSE_uc001hdv.2_Missense_Mutation_p.G324E|CTSE_uc010prs.1_Missense_Mutation_p.G249E	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	377					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			GGATCCTGGGGGATGTCTTCAT	0.559													55	129					0	0	1	0	0
IKBKE	9641	broad.mit.edu	37	1	206653844	206653844	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206653844C>T	uc001hdz.1	+	13	1763	c.1395C>T	c.(1393-1395)CTC>CTT	p.L465L	IKBKE_uc009xbv.1_Silent_p.L465L|IKBKE_uc001hea.1_Silent_p.L380L	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	465					DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					GGACATCCCTCCTCTACCTCA	0.612													9	21					0	0	1	0	0
IKBKE	9641	broad.mit.edu	37	1	206666435	206666435	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206666435C>T	uc001hdz.1	+	19	2283	c.1915C>T	c.(1915-1917)CAG>TAG	p.Q639*	IKBKE_uc009xbv.1_Nonsense_Mutation_p.Q639*|IKBKE_uc001hea.1_Nonsense_Mutation_p.Q554*	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	639					DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					CCAGGGGGTCCAGGAGAGTCT	0.597													3	10					0	0	1	0	0
LGTN	1939	broad.mit.edu	37	1	206769163	206769163	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206769163G>A	uc001heh.2	-	13	1622	c.1413C>T	c.(1411-1413)GCC>GCT	p.A471A	LGTN_uc009xbw.2_Silent_p.A347A	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	471					intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TCACTTGATAGGCAGGCTGTA	0.438													42	164					0	0	1	0	0
LGTN	1939	broad.mit.edu	37	1	206778857	206778857	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206778857G>A	uc001heh.2	-	5	635	c.426C>T	c.(424-426)GCC>GCT	p.A142A	LGTN_uc009xbw.2_Silent_p.A142A|LGTN_uc010prw.1_Missense_Mutation_p.P128S	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	142	PUA.				intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TGGCTACAGGGGCTCTAAGAA	0.512													9	25					0	0	1	0	0
DYRK3	8444	broad.mit.edu	37	1	206821945	206821945	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:206821945C>T	uc001hej.2	+	3	1570	c.1402C>T	c.(1402-1404)CGC>TGC	p.R468C	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.R448C	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	468	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TGTGGGGGGTCGCTCACGTAG	0.522													71	188					0	0	1	0	0
IL20	50604	broad.mit.edu	37	1	207041867	207041867	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207041867G>A	uc001her.2	+	5	533	c.489G>A	c.(487-489)GGG>GGA	p.G163G	IL20_uc010pry.1_Silent_p.G234G|IL20_uc009xby.2_Silent_p.G138G	NM_018724	NP_061194	Q9NYY1	IL20_HUMAN	interleukin 20 precursor	163					positive regulation of keratinocyte differentiation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of inflammatory response	extracellular space	cytokine activity|interleukin-20 receptor binding				0	Breast(84;0.201)			OV - Ovarian serous cystadenocarcinoma(81;0.00459)		AGGCTTTGGGGGAACTAGACA	0.473													7	22					0	0	1	0	0
FAIM3	9214	broad.mit.edu	37	1	207085271	207085271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207085271C>T	uc001hey.2	-	4	693	c.514G>A	c.(514-516)GTC>ATC	p.V172I	FAIM3_uc010prz.1_Missense_Mutation_p.V60I|FAIM3_uc010psa.1_Missense_Mutation_p.V81I|FAIM3_uc010psb.1_Missense_Mutation_p.V172I	NM_005449	NP_005440	O60667	FAIM3_HUMAN	Fas apoptotic inhibitory molecule 3 isoform a	172	Extracellular (Potential).				anti-apoptosis|cellular defense response	integral to membrane				central_nervous_system(1)	1	Breast(84;0.201)					ACTGGAGGGACCTTGCCCCTT	0.448											OREG0014185	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	30					0	0	1	0	0
FAIM3	9214	broad.mit.edu	37	1	207095173	207095173	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207095173G>A	uc001hey.2	-	1	206	c.27C>T	c.(25-27)TAC>TAT	p.Y9Y	FAIM3_uc010prz.1_Silent_p.Y9Y|FAIM3_uc010psa.1_5'UTR|FAIM3_uc010psb.1_Silent_p.Y9Y	NM_005449	NP_005440	O60667	FAIM3_HUMAN	Fas apoptotic inhibitory molecule 3 isoform a	9					anti-apoptosis|cellular defense response	integral to membrane				central_nervous_system(1)	1	Breast(84;0.201)					CTGGCAGGAAGTAAAGTGGCC	0.507													26	52					0	0	1	0	0
PIGR	5284	broad.mit.edu	37	1	207103749	207103749	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207103749C>T	uc001hez.2	-	11	2393	c.2209G>A	c.(2209-2211)GAG>AAG	p.E737K	PIGR_uc009xbz.2_Missense_Mutation_p.E737K	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	737	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TCGGCTTCCTCCTTGGATGAC	0.627													8	34					0	0	1	0	0
PIGR	5284	broad.mit.edu	37	1	207107939	207107939	+	Missense_Mutation	SNP	C	T	T	rs141320420	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207107939C>T	uc001hez.2	-	6	1715	c.1531G>A	c.(1531-1533)GAA>AAA	p.E511K	PIGR_uc009xbz.2_Missense_Mutation_p.E511K	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	511	Ig-like V-type 5.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CTGGGGCCTTCGTCTTGGCTG	0.577													46	88					0	0	1	0	0
PIGR	5284	broad.mit.edu	37	1	207108834	207108834	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207108834C>T	uc001hez.2	-	5	1559	c.1375G>A	c.(1375-1377)GAA>AAA	p.E459K	PIGR_uc009xbz.2_Missense_Mutation_p.E459K	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	459	Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CTCCTACCTTCGATAATCTTG	0.567											OREG0014186	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	78					0	0	1	0	0
PIGR	5284	broad.mit.edu	37	1	207110583	207110583	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207110583G>A	uc001hez.2	-	4	1086	c.902C>T	c.(901-903)CCC>CTC	p.P301L	PIGR_uc009xbz.2_Missense_Mutation_p.P301L	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	301	Ig-like V-type 3.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CTTGTCCTGGGGGTTGAGCAG	0.587													27	50					0	0	1	0	0
FCAMR	83953	broad.mit.edu	37	1	207135558	207135558	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207135558C>T	uc001hfa.3	-	5	1152	c.652G>A	c.(652-654)GGT>AGT	p.G218S	FCAMR_uc001hfb.2_Missense_Mutation_p.V218I|FCAMR_uc009xca.1_Missense_Mutation_p.V218I|FCAMR_uc001hfc.2_Missense_Mutation_p.G193S	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	173	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						CAGCTCATACCTGCAGAGATG	0.512													17	50					0	0	1	0	0
FCAMR	83953	broad.mit.edu	37	1	207135708	207135708	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207135708C>T	uc001hfa.3	-	5	1002	c.502G>A	c.(502-504)GAC>AAC	p.D168N	FCAMR_uc001hfb.2_Missense_Mutation_p.D168N|FCAMR_uc009xca.1_Missense_Mutation_p.D168N|FCAMR_uc001hfc.2_Missense_Mutation_p.D143N	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	123	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						GCCACACGGTCACGATAGCGA	0.572													24	51					0	0	1	0	0
FCAMR	83953	broad.mit.edu	37	1	207140439	207140439	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207140439C>T	uc001hfa.3	-	3	627	c.127G>A	c.(127-129)GGA>AGA	p.G43R	FCAMR_uc001hfb.2_Missense_Mutation_p.G43R|FCAMR_uc009xca.1_Missense_Mutation_p.G43R|FCAMR_uc001hfc.2_Intron	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane|plasma membrane	receptor activity			ovary(1)	1						ATTTTCCATCCCGCCCTCCTG	0.527													5	51					0	0	1	0	0
C1orf116	79098	broad.mit.edu	37	1	207195413	207195413	+	Missense_Mutation	SNP	G	A	A	rs147463881		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207195413G>A	uc001hfd.2	-	4	1955	c.1696C>T	c.(1696-1698)CGT>TGT	p.R566C	C1orf116_uc009xcb.1_Missense_Mutation_p.R320C	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	566						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					AGCTTGTCACGGCTCTGTCCT	0.587													16	43					0	0	1	0	0
C1orf116	79098	broad.mit.edu	37	1	207196053	207196053	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207196053C>T	uc001hfd.2	-	4	1315	c.1056G>A	c.(1054-1056)GAG>GAA	p.E352E	C1orf116_uc009xcb.1_Silent_p.E106E	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	352						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					GCCCCAGCTTCTCTAGAGCTT	0.557													13	89					0	0	1	0	0
C1orf116	79098	broad.mit.edu	37	1	207196183	207196183	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207196183C>T	uc001hfd.2	-	4	1185	c.926G>A	c.(925-927)AGC>AAC	p.S309N	C1orf116_uc009xcb.1_Missense_Mutation_p.S63N	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	309						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					GCTTCGGCTGCTCTTCAGAAC	0.587													28	50					0	0	1	0	0
YOD1	55432	broad.mit.edu	37	1	207222587	207222587	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207222587G>A	uc001hfe.1	-	2	872	c.825C>T	c.(823-825)TTC>TTT	p.F275F	PFKFB2_uc010psc.1_Intron|YOD1_uc001hff.1_Silent_p.F231F	NM_018566	NP_061036	Q5VVQ6	OTU1_HUMAN	YOD1 OTU deubiquinating enzyme 1 homolog	275					cellular amino acid metabolic process|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|protein K48-linked deubiquitination|protein K63-linked deubiquitination	intracellular	protein binding|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1	Prostate(682;0.19)					CTGGATCAGGGAAGTTACGCT	0.413													74	179					0	0	1	0	0
PFKFB2	5208	broad.mit.edu	37	1	207228079	207228079	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207228079C>T	uc001hfg.2	+	2	126	c.17C>T	c.(16-18)TCC>TTC	p.S6F	PFKFB2_uc010psc.1_5'UTR|YOD1_uc001hff.1_5'Flank|PFKFB2_uc001hfh.2_Missense_Mutation_p.S6F|PFKFB2_uc009xcc.2_5'UTR	NM_006212	NP_006203	O60825	F262_HUMAN	6-phosphofructo-2-kinase/fructose-2,	6	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			ovary(1)	1	Prostate(682;0.19)					GGGGCATCTTCCTCAGAACAG	0.423													13	20					0	0	1	0	0
C4BPB	725	broad.mit.edu	37	1	207262917	207262917	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207262917G>A	uc001hfj.2	+	2	171	c.41G>A	c.(40-42)CGA>CAA	p.R14Q	C4BPB_uc001hfi.2_Missense_Mutation_p.R14Q|C4BPB_uc001hfk.2_Missense_Mutation_p.R14Q|C4BPB_uc001hfl.2_Missense_Mutation_p.R14Q|C4BPB_uc009xcd.2_Missense_Mutation_p.R5Q|C4BPB_uc001hfm.2_Missense_Mutation_p.R14Q|C4BPB_uc010pse.1_Missense_Mutation_p.R5Q	NM_001017365	NP_001017365	P20851	C4BPB_HUMAN	complement component 4 binding protein, beta	14					blood coagulation|complement activation, classical pathway|innate immune response	extracellular region				ovary(1)	1						GTTGCGTGGCGAGTTTCTGCT	0.478													17	43					0	0	1	0	0
C4BPA	722	broad.mit.edu	37	1	207297708	207297708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207297708G>A	uc001hfo.2	+	6	897	c.703G>A	c.(703-705)GAA>AAA	p.E235K		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	235	Sushi 3.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TCCTACCTGTGAAAGTAAGTC	0.418													15	51					0	0	1	0	0
C4BPA	722	broad.mit.edu	37	1	207307839	207307839	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207307839G>A	uc001hfo.2	+	9	1369	c.1175G>A	c.(1174-1176)GGA>GAA	p.G392E		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	392	Sushi 6.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TATTTCTATGGAGATGAGATT	0.423													43	133					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207639872	207639872	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207639872G>A	uc001hfw.2	+	2	154	c.60G>A	c.(58-60)GGG>GGA	p.G20G	CR2_uc001hfv.2_Silent_p.G20G|CR2_uc009xch.2_Silent_p.G20G	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	20					complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						ACTTTTCAGGGATTTCTTGTG	0.383													66	186					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207640026	207640026	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207640026G>A	uc001hfw.2	+	2	308	c.214G>A	c.(214-216)GAT>AAT	p.D72N	CR2_uc001hfv.2_Missense_Mutation_p.D72N|CR2_uc009xch.2_Missense_Mutation_p.D72N	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	72	Sushi 1.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						AGACAAAGTGGATGGAACCTG	0.413													48	109					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207640098	207640098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207640098G>A	uc001hfw.2	+	2	380	c.286G>A	c.(286-288)GTA>ATA	p.V96I	CR2_uc001hfv.2_Missense_Mutation_p.V96I|CR2_uc009xch.2_Missense_Mutation_p.V96I	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	96	Sushi 2.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TGAGCCCATAGTACCAGGAGG	0.398													21	112					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207640181	207640181	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207640181C>T	uc001hfw.2	+	2	463	c.369C>T	c.(367-369)TCC>TCT	p.S123S	CR2_uc001hfv.2_Silent_p.S123S|CR2_uc009xch.2_Silent_p.S123S	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	123	Sushi 2.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CCAACTTCTCCATGAACGGAA	0.458													36	77					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207642028	207642028	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207642028G>A	uc001hfw.2	+	3	696	c.602G>A	c.(601-603)GGA>GAA	p.G201E	CR2_uc001hfv.2_Missense_Mutation_p.G201E|CR2_uc009xch.2_Missense_Mutation_p.G201E|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	201	Sushi 3.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TTGTCTTCGGGAAAATGGAGT	0.418													55	160					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207643161	207643161	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207643161G>A	uc001hfw.2	+	6	1033	c.939G>A	c.(937-939)GTG>GTA	p.V313V	CR2_uc001hfv.2_Silent_p.V313V|CR2_uc009xch.2_Silent_p.V313V|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	313	Sushi 5.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						AGGAAGGAGTGAACTTCATCC	0.483													26	58					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207644767	207644767	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207644767G>A	uc001hfw.2	+	9	1588	c.1494_splice	c.e9-1	p.G498_splice	CR2_uc001hfv.2_Splice_Site_p.G498_splice|CR2_uc009xch.2_Splice_Site_p.G498_splice|CR2_uc009xci.1_Intron	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)						complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TCTGTCTCTAGGTACAAGTTA	0.438													55	125					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207644806	207644806	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207644806G>A	uc001hfw.2	+	9	1626	c.1532G>A	c.(1531-1533)GGC>GAC	p.G511D	CR2_uc001hfv.2_Missense_Mutation_p.G511D|CR2_uc009xch.2_Missense_Mutation_p.G511D|CR2_uc009xci.1_Intron	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	511	Sushi 8.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GAGTGTCAAGGCACAATTCCT	0.403													55	147					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207651394	207651394	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207651394C>T	uc001hfw.2	+	15	2984	c.2890C>T	c.(2890-2892)CCC>TCC	p.P964S	CR2_uc001hfv.2_Missense_Mutation_p.P1023S|CR2_uc009xch.2_Missense_Mutation_p.P902S	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	964	Sushi 15.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						ATGGAACCCTCCCCTGGCGGT	0.542													5	31					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207669644	207669644	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207669644C>T	uc001hfy.2	+	1	172	c.32C>T	c.(31-33)CCT>CTT	p.P11L	CR1_uc009xcl.1_Missense_Mutation_p.P11L|CR1_uc001hfx.2_Missense_Mutation_p.P11L|CR1_uc010psg.1_Missense_Mutation_p.P11L|CR1_uc009xcj.1_Missense_Mutation_p.P11L|CR1_uc009xck.1_Missense_Mutation_p.P11L	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	11					complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AGCCCGGAGCCTGTCGGGCCG	0.617													13	53					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207669671	207669671	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207669671C>T	uc001hfy.2	+	1	199	c.59C>T	c.(58-60)CCC>CTC	p.P20L	CR1_uc009xcl.1_Missense_Mutation_p.P20L|CR1_uc001hfx.2_Missense_Mutation_p.P20L|CR1_uc010psg.1_Missense_Mutation_p.P20L|CR1_uc009xcj.1_Missense_Mutation_p.P20L|CR1_uc009xck.1_Missense_Mutation_p.P20L	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	20					complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CCCGGTCTCCCCTTCTGCTGC	0.682													17	28					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207751211	207751211	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207751211G>A	uc001hfy.2	+	21	3389	c.3249G>A	c.(3247-3249)GAG>GAA	p.E1083E	CR1_uc009xcl.1_Silent_p.E633E|CR1_uc001hfx.2_Silent_p.E1533E	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1083	Extracellular (Potential).|Sushi 17.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CCAACAGAGAGAATTTTCACT	0.468													21	102					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207751310	207751310	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207751310C>T	uc001hfy.2	+	21	3488	c.3348C>T	c.(3346-3348)ACC>ACT	p.T1116T	CR1_uc009xcl.1_Silent_p.T666T|CR1_uc001hfx.2_Silent_p.T1566T	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1116	Extracellular (Potential).|Sushi 17.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TATACTGCACCAGCAATGACG	0.493													53	119					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207758014	207758014	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207758014C>T	uc001hfy.2	+	25	4113	c.3973C>T	c.(3973-3975)CCA>TCA	p.P1325S	CR1_uc009xcl.1_Missense_Mutation_p.P875S|CR1_uc001hfx.2_Missense_Mutation_p.P1775S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1325	Extracellular (Potential).|Sushi 21.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TCCAAATCCTCCAGCTATCCT	0.388													31	117					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207758215	207758215	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207758215C>T	uc001hfy.2	+	25	4314	c.4174C>T	c.(4174-4176)CGT>TGT	p.R1392C	CR1_uc009xcl.1_Missense_Mutation_p.R942C|CR1_uc001hfx.2_Missense_Mutation_p.R1842C	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1392	Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						ACTTTCTGTTCGTGCTGGTCA	0.488													41	86					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207760774	207760774	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207760774G>A	uc001hfy.2	+	26	4364	c.4224G>A	c.(4222-4224)ACG>ACA	p.T1408T	CR1_uc009xcl.1_Silent_p.T958T|CR1_uc001hfx.2_Silent_p.T1858T	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1408	Sushi 22.|Extracellular (Potential).		T -> I.		complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CCAGTCCTACGATCCCAATTA	0.438													25	56					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207785317	207785317	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207785317C>T	uc001hfy.2	+	31	5296	c.5156C>T	c.(5155-5157)CCT>CTT	p.P1719L	CR1_uc001hfx.2_Missense_Mutation_p.P2169L	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1719	Extracellular (Potential).|Sushi 27.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GGCCAACTCCCTCATGGCCGT	0.483													30	408					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207787802	207787802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207787802C>T	uc001hfy.2	+	32	5419	c.5279C>T	c.(5278-5280)GCC>GTC	p.A1760V	CR1_uc001hfx.2_Missense_Mutation_p.A2210V	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1760	Extracellular (Potential).|Sushi 27.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GGAATGAAAGCCCTTTGGAAT	0.413													19	88					0	0	1	0	0
CR1L	1379	broad.mit.edu	37	1	207850802	207850802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207850802C>T	uc001hga.3	+	2	287	c.166C>T	c.(166-168)CCC>TCC	p.P56S	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	56	Sushi 1.					cytoplasm|extracellular region|membrane					0						CTTTGAGTTTCCCATTGGGAC	0.468													41	126					0	0	1	0	0
CR1L	1379	broad.mit.edu	37	1	207870911	207870911	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207870911C>T	uc001hga.3	+	6	1047	c.926C>T	c.(925-927)TCA>TTA	p.S309L	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	309	Sushi 5.					cytoplasm|extracellular region|membrane					0						GACAACTTTTCACCCGGGCAG	0.547													69	200					0	0	1	0	0
CR1L	1379	broad.mit.edu	37	1	207872548	207872548	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207872548G>A	uc001hga.3	+	8	1278	c.1157G>A	c.(1156-1158)GGC>GAC	p.G386D	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	386	Sushi 6.					cytoplasm|extracellular region|membrane					0						CAATTAAAAGGCAGCTCTGCT	0.423											OREG0014195	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	93					0	0	1	0	0
CR1L	1379	broad.mit.edu	37	1	207881565	207881565	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:207881565G>A	uc001hga.3	+	10	1492	c.1371G>A	c.(1369-1371)TCG>TCA	p.S457S	CR1L_uc001hfz.2_Intron|CR1L_uc001hgb.1_Intron	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	457	Sushi 7.					cytoplasm|extracellular region|membrane					0						GTATCCTCTCGGGCAATACTG	0.323													40	183					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208200648	208200648	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:208200648C>T	uc001hgz.2	-	32	6383	c.5625G>A	c.(5623-5625)CGG>CGA	p.R1875R	PLXNA2_uc001hgy.2_Silent_p.R145R	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1875	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		GCCGCTGCCGCCGTGCCTGCT	0.547													29	85					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208218435	208218435	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:208218435G>A	uc001hgz.2	-	19	4374	c.3616C>T	c.(3616-3618)CTC>TTC	p.L1206F		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1206	IPT/TIG 4.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		TGCCCGGTGAGGTTGGGAGGC	0.582													23	59					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208218536	208218536	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:208218536G>A	uc001hgz.2	-	19	4273	c.3515C>T	c.(3514-3516)CCT>CTT	p.P1172L		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1172	IPT/TIG 4.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		TCCAGAGGCAGGAGGGCAGAG	0.388													30	88					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208224719	208224719	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:208224719G>A	uc001hgz.2	-	16	3801	c.3043C>T	c.(3043-3045)CTT>TTT	p.L1015F		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1015	Extracellular (Potential).|IPT/TIG 2.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		ACCGGGCCAAGGCCATTGGAT	0.562													13	37					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208390835	208390835	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:208390835G>A	uc001hgz.2	-	2	1191	c.433C>T	c.(433-435)CTC>TTC	p.L145F	PLXNA2_uc001hha.3_Missense_Mutation_p.L199F	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	145	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		AGGATGAAGAGGTCATCCAGC	0.572													27	148					0	0	1	0	0
LOC642587	642587	broad.mit.edu	37	1	209602708	209602708	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209602708C>T	uc009xcn.2	+	2	449	c.66C>T	c.(64-66)GTC>GTT	p.V22V	LOC642587_uc010psk.1_5'Flank|MIR205_hsa-mir-205|MI0000285_5'Flank	NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		CCTCAGGAGTCATTTCTGTTC	0.373													5	21					0	0	1	0	0
CAMK1G	57172	broad.mit.edu	37	1	209782374	209782374	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209782374G>A	uc001hhd.2	+	8	787	c.685G>A	c.(685-687)GAG>AAG	p.E229K	CAMK1G_uc001hhf.3_Missense_Mutation_p.E229K|CAMK1G_uc001hhe.2_Missense_Mutation_p.E229K	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	229	Protein kinase.					Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		TAAGCTTTTCGAGAAGATCAA	0.493													55	120					0	0	1	0	0
CAMK1G	57172	broad.mit.edu	37	1	209783237	209783237	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209783237G>A	uc001hhd.2	+	9	892	c.790G>A	c.(790-792)GAG>AAG	p.E264K	CAMK1G_uc001hhf.3_Missense_Mutation_p.E264K|CAMK1G_uc001hhe.2_Missense_Mutation_p.E264K	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	264	Protein kinase.					Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		GGATCCGAACGAGCGGTACAC	0.498													21	76					0	0	1	0	0
CAMK1G	57172	broad.mit.edu	37	1	209784817	209784817	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209784817G>A	uc001hhd.2	+	10	937	c.835G>A	c.(835-837)GGA>AGA	p.G279R	CAMK1G_uc001hhf.3_Missense_Mutation_p.G279R|CAMK1G_uc001hhe.2_Missense_Mutation_p.G279R	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	279	Autoinhibitory domain (By similarity).					Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		CAGGATTGACGGAAACACAGC	0.562													5	24					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209788748	209788748	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209788748C>T	uc001hhg.2	-	22	3777	c.3387G>A	c.(3385-3387)ATG>ATA	p.M1129I	LAMB3_uc009xco.2_Missense_Mutation_p.M1129I|LAMB3_uc001hhh.2_Missense_Mutation_p.M1129I	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	1129	Domain I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		GCTCCAACTCCATGTCTGAGG	0.587													12	58					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209790845	209790845	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209790845G>A	uc001hhg.2	-	20	3528	c.3138C>T	c.(3136-3138)CTC>CTT	p.L1046L	LAMB3_uc009xco.2_Silent_p.L1046L|LAMB3_uc001hhh.2_Silent_p.L1046L	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	1046	Domain I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CTTGGTGGCGGAGCTCCTCCA	0.607													29	89					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209791391	209791391	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209791391C>T	uc001hhg.2	-	19	3302	c.2912G>A	c.(2911-2913)AGC>AAC	p.S971N	LAMB3_uc009xco.2_Missense_Mutation_p.S971N|LAMB3_uc001hhh.2_Missense_Mutation_p.S971N	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	971	Domain I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		ATGGGCTCGGCTCCTGGGTGA	0.572													7	77					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209797190	209797190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209797190G>A	uc001hhg.2	-	14	2522	c.2132C>T	c.(2131-2133)CCT>CTT	p.P711L	LAMB3_uc009xco.2_Missense_Mutation_p.P711L|LAMB3_uc001hhh.2_Missense_Mutation_p.P711L|LAMB3_uc010psl.1_RNA|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	711	Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CTCACCTGAAGGATCAGCACT	0.557													38	73					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209799047	209799047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209799047G>A	uc001hhg.2	-	13	2312	c.1922C>T	c.(1921-1923)CCC>CTC	p.P641L	LAMB3_uc009xco.2_Missense_Mutation_p.P641L|LAMB3_uc001hhh.2_Missense_Mutation_p.P641L|LAMB3_uc010psl.1_Intron|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	641	Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		TGTGACTGCGGGGCTGCTGAG	0.587													32	85					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209803966	209803966	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209803966A>T	uc001hhg.2	-	8	1327	c.937T>A	c.(937-939)TGC>AGC	p.C313S	LAMB3_uc009xco.2_Missense_Mutation_p.C313S|LAMB3_uc001hhh.2_Missense_Mutation_p.C313S|LAMB3_uc010psl.1_RNA|LAMB3_uc009xcp.1_Missense_Mutation_p.C249S	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	313	Laminin EGF-like 1.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CTACTTTGGCATTCATGGGCG	0.617													21	64					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209807842	209807842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209807842G>A	uc001hhg.2	-	5	904	c.514C>T	c.(514-516)CGG>TGG	p.R172W	LAMB3_uc009xco.2_Missense_Mutation_p.R172W|LAMB3_uc001hhh.2_Missense_Mutation_p.R172W|LAMB3_uc010psl.1_RNA|LAMB3_uc009xcp.1_Intron	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	172	Laminin N-terminal.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		GACTGGCACCGAACATCCTGC	0.602													34	83					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209807849	209807849	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209807849C>T	uc001hhg.2	-	5	897	c.507G>A	c.(505-507)CAG>CAA	p.Q169Q	LAMB3_uc009xco.2_Silent_p.Q169Q|LAMB3_uc001hhh.2_Silent_p.Q169Q|LAMB3_uc010psl.1_RNA|LAMB3_uc009xcp.1_Intron	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	169	Laminin N-terminal.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		ACCGAACATCCTGCCAGCTCT	0.607													23	97					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209807885	209807885	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209807885G>A	uc001hhg.2	-	5	861	c.471C>T	c.(469-471)TTC>TTT	p.F157F	LAMB3_uc009xco.2_Silent_p.F157F|LAMB3_uc001hhh.2_Silent_p.F157F|LAMB3_uc010psl.1_RNA|LAMB3_uc009xcp.1_Intron	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	157	Laminin N-terminal.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		GGACCCGAGGGAAGGTGGAGG	0.637													27	64					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209823449	209823449	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209823449G>A	uc001hhg.2	-	2	433	c.43C>T	c.(43-45)CTG>TTG	p.L15L	LAMB3_uc009xco.2_Silent_p.L15L|LAMB3_uc001hhh.2_Silent_p.L15L|LAMB3_uc010psl.1_RNA|LAMB3_uc009xcp.1_Silent_p.L15L	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	15					cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		TGGGCATGCAGGAGGCCAGGC	0.577													9	15					0	0	1	0	0
HSD11B1	3290	broad.mit.edu	37	1	209879200	209879200	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209879200G>A	uc001hhj.2	+	3	240	c.133G>A	c.(133-135)GGG>AGG	p.G45R	HSD11B1_uc001hhk.2_Missense_Mutation_p.G45R	NM_181755	NP_861420	P28845	DHI1_HUMAN	11-beta-hydroxysteroid dehydrogenase 1	45	Lumenal (Potential).|NADP.				glucocorticoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	11-beta-hydroxysteroid dehydrogenase (NADP+) activity|11-beta-hydroxysteroid dehydrogenase|binding			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;1.04e-55)|Epithelial(68;1.57e-52)|all cancers(67;1.83e-46)|Colorectal(1306;0.115)	NADH(DB00157)	GGCCAGCAAAGGGATCGGAAG	0.502													34	69					0	0	1	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209950791	209950792	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209950791_209950792GG>AA	uc001hho.2	+	12	1438_1439	c.1148_1149GG>AA	c.(1147-1149)GGG>GAA	p.G383E	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.G363E|TRAF3IP3_uc001hhm.1_Intron|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.G363E|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.G383E	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	383	Cytoplasmic (Potential).|Potential.					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		TGCCTGCAAGGGGACAGAGACC	0.52													14	48					0	0	1	0	0
IRF6	3664	broad.mit.edu	37	1	209961772	209961772	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209961772G>A	uc001hhq.1	-	9	1660	c.1397C>T	c.(1396-1398)CCC>CTC	p.P466L	IRF6_uc010psm.1_Missense_Mutation_p.P371L|IRF6_uc009xct.1_Missense_Mutation_p.P466L	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	466					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		CAATTACTGGGGAGGCAGGGC	0.458										HNSCC(57;0.16)			16	43					0	0	1	0	0
IRF6	3664	broad.mit.edu	37	1	209961966	209961966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:209961966C>T	uc001hhq.1	-	9	1466	c.1203G>A	c.(1201-1203)ATG>ATA	p.M401I	IRF6_uc010psm.1_Missense_Mutation_p.M306I|IRF6_uc009xct.1_Missense_Mutation_p.M401I	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	401					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		TCTCGTAGATCATCCGAGCCA	0.453										HNSCC(57;0.16)			4	22					0	0	1	0	0
C1orf107	27042	broad.mit.edu	37	1	210001478	210001478	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210001478C>T	uc001hhr.1	+	1	146	c.70C>T	c.(70-72)CTT>TTT	p.L24F	C1orf107_uc009xcu.1_5'UTR	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	24					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		GAAGAAACATCTTCGAGATTT	0.547											OREG0014221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	61					0	0	1	0	0
SYT14	255928	broad.mit.edu	37	1	210187104	210187104	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210187104C>T	uc009xcv.2	+	3	260	c.188C>T	c.(187-189)TCA>TTA	p.S63L	SYT14_uc001hhs.3_Missense_Mutation_p.S108L|SYT14_uc001hht.3_Missense_Mutation_p.S63L|SYT14_uc001hhu.3_RNA|SYT14_uc010psn.1_Missense_Mutation_p.S108L|SYT14_uc010pso.1_Missense_Mutation_p.S25L	NM_153262	NP_694994	Q8NB59	SYT14_HUMAN	synaptotagmin XIV isoform 4	63	Cytoplasmic (Potential).					integral to membrane				ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.085)		GATCTTGGTTCAGAATACAGT	0.328													43	126					0	0	1	0	0
SERTAD4	56256	broad.mit.edu	37	1	210411339	210411339	+	Missense_Mutation	SNP	G	A	A	rs146773666		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210411339G>A	uc001hhy.2	+	2	213	c.34G>A	c.(34-36)GAG>AAG	p.E12K	SERTAD4_uc009xcw.2_Missense_Mutation_p.E12K	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	12							protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		TAGATTCTGCGAGCCCATTGT	0.483													38	102					0	0	1	0	0
SERTAD4	56256	broad.mit.edu	37	1	210414908	210414908	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210414908C>T	uc001hhy.2	+	4	476	c.297C>T	c.(295-297)ATC>ATT	p.I99I	SERTAD4_uc009xcw.2_Silent_p.I99I	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	99							protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		TGTAGACCATCTCAATTTTTG	0.284													18	66					0	0	1	0	0
SERTAD4	56256	broad.mit.edu	37	1	210414947	210414947	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210414947C>T	uc001hhy.2	+	4	515	c.336C>T	c.(334-336)TCC>TCT	p.S112S	SERTAD4_uc009xcw.2_Silent_p.S112S	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	112	SERTA.						protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		TTTATATGTCCTTAGAAAAGC	0.294													23	113					0	0	1	0	0
HHAT	55733	broad.mit.edu	37	1	210577852	210577852	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210577852C>T	uc009xcx.2	+	6	679	c.513C>T	c.(511-513)TTC>TTT	p.F171F	HHAT_uc010psq.1_Intron|HHAT_uc001hhz.3_Silent_p.F171F|HHAT_uc010psr.1_Silent_p.F172F|HHAT_uc010pss.1_Silent_p.F126F|HHAT_uc009xcy.2_Silent_p.F106F|HHAT_uc010pst.1_Silent_p.F108F|HHAT_uc010psu.1_Silent_p.F106F	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	171					multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		TGCTGCAGTTCACGCTGACCG	0.542													28	46					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210856647	210856647	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210856647C>T	uc001hib.2	-	11	3116	c.2946G>A	c.(2944-2946)GAG>GAA	p.E982E	KCNH1_uc001hic.2_Silent_p.E955E	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	982	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		AAATGTCTCTCTCTGATTCTG	0.463													16	241					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210857019	210857019	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210857019C>T	uc001hib.2	-	11	2744	c.2574G>A	c.(2572-2574)TCG>TCA	p.S858S	KCNH1_uc001hic.2_Silent_p.S831S	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	858	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		GTGTCTCCATCGACTCAGCCT	0.592													36	109					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210857051	210857051	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210857051C>T	uc001hib.2	-	11	2712	c.2542G>A	c.(2542-2544)GAG>AAG	p.E848K	KCNH1_uc001hic.2_Missense_Mutation_p.E821K	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	848	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TTCCAGTCCTCACTCTTCCCG	0.612													38	97					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210857425	210857425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210857425C>T	uc001hib.2	-	11	2338	c.2168G>A	c.(2167-2169)CGA>CAA	p.R723Q	KCNH1_uc001hic.2_Missense_Mutation_p.R696Q	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	723	Cytoplasmic (Potential).|Calmodulin-binding.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CTCATTCTTTCGTTTCATGCG	0.552													16	55					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210948733	210948733	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210948733G>A	uc001hib.2	-	10	2239	c.2069C>T	c.(2068-2070)TCC>TTC	p.S690F	KCNH1_uc001hic.2_Missense_Mutation_p.S663F	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	690	Cytoplasmic (Potential).|cNMP.|Calmodulin-binding.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CCGGGAGAAGGAATGGGAGAA	0.473													18	31					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210970944	210970944	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210970944G>A	uc001hib.2	-	9	1991	c.1821C>T	c.(1819-1821)CTC>CTT	p.L607L	KCNH1_uc001hic.2_Silent_p.L580L	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	607	Cytoplasmic (Potential).|cNMP.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CATGGTAGATGAGGTCCCCTG	0.602													43	77					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210977336	210977336	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:210977336G>A	uc001hib.2	-	8	1805	c.1635C>T	c.(1633-1635)TCC>TCT	p.S545S	KCNH1_uc001hic.2_Silent_p.S518S	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	545	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CTCTGGACATGGACCAAGTGG	0.483													39	113					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	211093356	211093356	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:211093356C>T	uc001hib.2	-	7	1258	c.1088G>A	c.(1087-1089)CGA>CAA	p.R363Q	KCNH1_uc001hic.2_Missense_Mutation_p.R336Q	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	363	Helical; Voltage-sensor; Name=Segment S4; (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		ACGGGCCACTCGCCCAAGACG	0.562													21	111					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	211192190	211192190	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:211192190C>T	uc001hib.2	-	6	1137	c.967G>A	c.(967-969)GGT>AGT	p.G323S	KCNH1_uc001hic.2_Intron	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	323	Extracellular (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CCTGGATCACCCATAAAGGCA	0.468													38	129					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	211192554	211192554	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:211192554C>T	uc001hib.2	-	6	773	c.603G>A	c.(601-603)GAG>GAA	p.E201E	KCNH1_uc001hic.2_Silent_p.E201E	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	201	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TCTTTGGTGCCTCTTGCTTGT	0.433													36	72					0	0	1	0	0
RD3	343035	broad.mit.edu	37	1	211654713	211654713	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:211654713C>T	uc001him.2	-	2	1209	c.45G>A	c.(43-45)CGG>CGA	p.R15R	RD3_uc001hin.2_RNA|RD3_uc009xda.2_Intron	NM_183059	NP_898882	Q7Z3Z2	RD3_HUMAN	retinal degeneration 3	15					response to stimulus|visual perception					ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.00284)|all cancers(67;0.0279)|Epithelial(68;0.0689)		TGGTGGACAGCCGGGATGGGG	0.622													8	72					0	0	1	0	0
SLC30A1	7779	broad.mit.edu	37	1	211749497	211749497	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:211749497G>A	uc001hio.1	-	2	902	c.757C>T	c.(757-759)CTT>TTT	p.L253F		NM_021194	NP_067017	Q9Y6M5	ZNT1_HUMAN	solute carrier family 30 (zinc transporter),	253	Helical; (Potential).				cadmium ion transmembrane transport|cellular calcium ion homeostasis|cellular zinc ion homeostasis|negative regulation of calcium ion import|negative regulation of neurotransmitter secretion|negative regulation of zinc ion import	integral to membrane|T-tubule	calcium channel inhibitor activity|zinc ion transmembrane transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(81;0.00535)|GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.0604)|Epithelial(68;0.0978)		GCATCTCCAAGGACATGCAGA	0.413													25	77					0	0	1	0	0
INTS7	25896	broad.mit.edu	37	1	212149950	212149950	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:212149950G>A	uc001hiw.1	-	12	1687	c.1582C>T	c.(1582-1584)CGT>TGT	p.R528C	INTS7_uc009xdb.1_Missense_Mutation_p.R528C|INTS7_uc001hix.1_Missense_Mutation_p.R404C|INTS7_uc001hiy.1_Missense_Mutation_p.R528C|INTS7_uc010pta.1_Missense_Mutation_p.R479C	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	528					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		CTGGCAATACGGTATACAGTC	0.408													43	91					0	0	1	0	0
INTS7	25896	broad.mit.edu	37	1	212180634	212180634	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:212180634G>A	uc001hiw.1	-	6	819	c.714C>T	c.(712-714)TTC>TTT	p.F238F	INTS7_uc009xdb.1_Silent_p.F238F|INTS7_uc001hix.1_Silent_p.F114F|INTS7_uc001hiy.1_Silent_p.F238F|INTS7_uc010pta.1_Silent_p.F189F	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	238					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		CAAGCAGAGTGAAAGTGTGCA	0.398													22	42					0	0	1	0	0
DTL	51514	broad.mit.edu	37	1	212276201	212276201	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:212276201C>T	uc009xdc.2	+	15	2426	c.2112C>T	c.(2110-2112)AGC>AGT	p.S704S	DTL_uc010ptb.1_Silent_p.S662S|DTL_uc001hiz.3_Silent_p.S433S	NM_016448	NP_057532	Q9NZJ0	DTL_HUMAN	denticleless homolog	704					DNA replication|G2/M transition DNA damage checkpoint|protein monoubiquitination|protein polyubiquitination|response to UV|translesion synthesis|ubiquitin-dependent protein catabolic process	centrosome|Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|nuclear membrane	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00796)|all cancers(67;0.0385)|Epithelial(68;0.102)		TCACGCCCAGCTCCATGAGGA	0.358													20	43					0	0	1	0	0
NENF	29937	broad.mit.edu	37	1	212619322	212619322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:212619322C>T	uc001hjd.2	+	4	550	c.493C>T	c.(493-495)CAT>TAT	p.H165Y	NENF_uc010ptf.1_RNA	NM_013349	NP_037481	Q9UMX5	NENF_HUMAN	neuron derived neurotrophic factor precursor	165						extracellular space	heme binding				0				all cancers(67;0.00967)|OV - Ovarian serous cystadenocarcinoma(81;0.0108)|GBM - Glioblastoma multiforme(131;0.0325)|Epithelial(68;0.132)		AGACCAGCCCCATTTTGACAT	0.522													18	73					0	0	1	0	0
FAM71A	149647	broad.mit.edu	37	1	212798854	212798854	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:212798854G>A	uc001hjk.2	+	1	1039	c.635G>A	c.(634-636)GGA>GAA	p.G212E	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	212										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		AACCTTCAAGGAAAGGGGGAT	0.562													38	96					0	0	1	0	0
FAM71A	149647	broad.mit.edu	37	1	212798992	212798992	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:212798992C>T	uc001hjk.2	+	1	1177	c.773C>T	c.(772-774)TCC>TTC	p.S258F	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	258										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		CTCAATGCATCCATCCCCAAA	0.403													53	125					0	0	1	0	0
FAM71A	149647	broad.mit.edu	37	1	212799896	212799896	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:212799896G>A	uc001hjk.2	+	1	2081	c.1677G>A	c.(1675-1677)AGG>AGA	p.R559R	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	559										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		TGGCGGAGAGGAGCACCAACG	0.552													38	101					0	0	1	0	0
BATF3	55509	broad.mit.edu	37	1	212860311	212860311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:212860311C>T	uc001hjl.1	-	3	429	c.206G>A	c.(205-207)AGC>AAC	p.S69N		NM_018664	NP_061134	Q9NR55	BATF3_HUMAN	basic leucine zipper transcription factor,	69	Leucine-zipper.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0046)|all cancers(67;0.00785)|GBM - Glioblastoma multiforme(131;0.0731)|Epithelial(68;0.0781)		TTGCTCCAGGCTCTCATATTC	0.557													69	136					0	0	1	0	0
FLVCR1	28982	broad.mit.edu	37	1	213046096	213046096	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:213046096C>T	uc001hjt.2	+	3	1158	c.960C>T	c.(958-960)TCC>TCT	p.S320S		NM_014053	NP_054772	Q9Y5Y0	FLVC1_HUMAN	feline leukemia virus subgroup C cellular	320					cell death|cellular iron ion homeostasis|heme export|transmembrane transport	integral to plasma membrane	heme transporter activity|protein binding|receptor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.00733)|all cancers(67;0.013)|GBM - Glioblastoma multiforme(131;0.0845)|Epithelial(68;0.11)		AAGAGTACTCCTATAAGAAAT	0.383													14	54					0	0	1	0	0
VASH2	79805	broad.mit.edu	37	1	213147299	213147299	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:213147299C>T	uc001hjy.2	+	6	1086	c.882C>T	c.(880-882)ATC>ATT	p.I294I	VASH2_uc001hjv.2_RNA|VASH2_uc001hjx.2_Silent_p.I229I|VASH2_uc010ptn.1_Silent_p.I190I|VASH2_uc001hjw.2_Silent_p.I250I	NM_001136475	NP_001129947	Q86V25	VASH2_HUMAN	vasohibin 2 isoform 3	294					positive regulation of angiogenesis|positive regulation of endothelial cell proliferation	cytoplasm					0				OV - Ovarian serous cystadenocarcinoma(81;0.00479)|all cancers(67;0.00844)|GBM - Glioblastoma multiforme(131;0.0496)|Epithelial(68;0.0986)		TCCTTCAGATCCTGAAACCTG	0.587													17	29					0	0	1	0	0
VASH2	79805	broad.mit.edu	37	1	213147345	213147345	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:213147345G>A	uc001hjy.2	+	6	1132	c.928G>A	c.(928-930)GGA>AGA	p.G310R	VASH2_uc001hjv.2_RNA|VASH2_uc001hjx.2_Missense_Mutation_p.G245R|VASH2_uc010ptn.1_Missense_Mutation_p.G206R|VASH2_uc001hjw.2_Missense_Mutation_p.G266R	NM_001136475	NP_001129947	Q86V25	VASH2_HUMAN	vasohibin 2 isoform 3	310					positive regulation of angiogenesis|positive regulation of endothelial cell proliferation	cytoplasm					0				OV - Ovarian serous cystadenocarcinoma(81;0.00479)|all cancers(67;0.00844)|GBM - Glioblastoma multiforme(131;0.0496)|Epithelial(68;0.0986)		GAGAAGCCGGGGAAAATCCCT	0.572													13	60					0	0	1	0	0
PROX1	5629	broad.mit.edu	37	1	214171118	214171118	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:214171118G>A	uc001hkh.2	+	2	1512	c.1240G>A	c.(1240-1242)GAC>AAC	p.D414N	PROX1_uc001hkg.1_Missense_Mutation_p.D414N	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	414					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		GTGCTTTGGCGACGTCATCAT	0.562													22	112					0	0	1	0	0
PROX1	5629	broad.mit.edu	37	1	214178524	214178524	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:214178524C>T	uc001hkh.2	+	3	2014	c.1742C>T	c.(1741-1743)TCA>TTA	p.S581L		NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	581	Prospero-type homeobox.				aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		GAAGGATTGTCACCCAATCAC	0.463													24	64					0	0	1	0	0
SMYD2	56950	broad.mit.edu	37	1	214504346	214504346	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:214504346C>T	uc010ptx.1	+	9	903	c.870C>T	c.(868-870)GCC>GCT	p.A290A	SMYD2_uc009xdj.2_Silent_p.A198A|SMYD2_uc010ptw.1_RNA|SMYD2_uc009xdl.1_Intron	NM_020197	NP_064582	Q9NRG4	SMYD2_HUMAN	SET and MYND domain containing 2	290					negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of DNA damage response, signal transduction by p53 class mediator|transcription, DNA-dependent	cytosol|nucleus	histone methyltransferase activity (H3-K36 specific)|p53 binding|RNA polymerase II core binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0122)|all cancers(67;0.0209)|GBM - Glioblastoma multiforme(131;0.106)|Epithelial(68;0.144)		AGGCAGAAGCCATCCGAGACA	0.502													48	113					0	0	1	0	0
PTPN14	5784	broad.mit.edu	37	1	214556972	214556972	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:214556972G>A	uc001hkk.1	-	13	2497	c.2226C>T	c.(2224-2226)GCC>GCT	p.A742A	PTPN14_uc010pty.1_Silent_p.A643A	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	742					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		TGGGGATGCGGGCCAGGGCCG	0.652													21	47					0	0	1	0	0
CENPF	1063	broad.mit.edu	37	1	214813331	214813331	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:214813331C>T	uc001hkm.2	+	12	1824	c.1650C>T	c.(1648-1650)TCC>TCT	p.S550S		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	550	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AAGAAAACTCCTTGACTTTAG	0.343													75	169					0	0	1	0	0
CENPF	1063	broad.mit.edu	37	1	214814107	214814107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:214814107C>T	uc001hkm.2	+	12	2600	c.2426C>T	c.(2425-2427)TCA>TTA	p.S809L		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	809					cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AGCATGCCTTCAGAGAGGAGT	0.388													17	42					0	0	1	0	0
CENPF	1063	broad.mit.edu	37	1	214815813	214815813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:214815813C>T	uc001hkm.2	+	12	4306	c.4132C>T	c.(4132-4134)CCT>TCT	p.P1378S		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		TGAACAGCACCCTGTGTCTTT	0.408													6	68					0	0	1	0	0
KCNK2	3776	broad.mit.edu	37	1	215259778	215259778	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215259778C>T	uc001hkq.2	+	2	283	c.114C>T	c.(112-114)TCC>TCT	p.S38S	KCNK2_uc001hko.2_Silent_p.S34S|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Silent_p.S23S	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	38	Cytoplasmic (Potential).						outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	TCTCGTTTTCCACGAAACCCA	0.512													18	57					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215807904	215807904	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215807904C>T	uc001hku.1	-	70	15581	c.15194G>A	c.(15193-15195)AGA>AAA	p.R5065K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	5065	Cytoplasmic (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTGGATTTTTCTTTGTAGTAT	0.448										HNSCC(13;0.011)			24	75					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215807923	215807923	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215807923G>A	uc001hku.1	-	70	15562	c.15175C>T	c.(15175-15177)CTG>TTG	p.L5059L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	5059	Helical; (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATCAGGGACAGAAAAATGGCC	0.438										HNSCC(13;0.011)			7	113					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215820886	215820886	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215820886G>A	uc001hku.1	-	67	15156	c.14769C>T	c.(14767-14769)ATC>ATT	p.I4923I		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4923	Extracellular (Potential).|Fibronectin type-III 34.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGGTGAAACTGATCCACTCGG	0.398										HNSCC(13;0.011)			24	42					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215844336	215844336	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215844336G>A	uc001hku.1	-	64	14498	c.14111C>T	c.(14110-14112)CCT>CTT	p.P4704L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4704	Fibronectin type-III 32.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTCTGTGAAAGGCAATAGTTC	0.378										HNSCC(13;0.011)			41	139					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215848098	215848098	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215848098C>T	uc001hku.1	-	63	13542	c.13155G>A	c.(13153-13155)AAG>AAA	p.K4385K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4385	Extracellular (Potential).|Fibronectin type-III 29.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATTTAGTAATCTTTCCATTTT	0.478										HNSCC(13;0.011)			7	71					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215848186	215848186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215848186G>A	uc001hku.1	-	63	13454	c.13067C>T	c.(13066-13068)CCA>CTA	p.P4356L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4356	Extracellular (Potential).|Fibronectin type-III 29.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GACTTCTGATGGAGCAGCCTC	0.498										HNSCC(13;0.011)			15	82					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215848305	215848305	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215848305G>A	uc001hku.1	-	63	13335	c.12948C>T	c.(12946-12948)TTC>TTT	p.F4316F		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4316	Fibronectin type-III 28.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CAGTGTAATTGAAAGTCACAG	0.448										HNSCC(13;0.011)			59	125					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215901705	215901705	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215901705C>T	uc001hku.1	-	61	12120	c.11733G>A	c.(11731-11733)GAG>GAA	p.E3911E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3911	Fibronectin type-III 24.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AAACAGACTCCTCTTCAATGC	0.453										HNSCC(13;0.011)			19	35					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215914768	215914768	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:215914768C>T	uc001hku.1	-	60	12047	c.11660G>A	c.(11659-11661)TGG>TAG	p.W3887*		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3887	Fibronectin type-III 24.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGGTGGCATCCACTTAATCTC	0.383										HNSCC(13;0.011)			44	117					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216062391	216062391	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216062391C>T	uc001hku.1	-	41	7987	c.7600G>A	c.(7600-7602)GGA>AGA	p.G2534R		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2534	Fibronectin type-III 12.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACTACAGGTCCAGGTTCTGTA	0.413										HNSCC(13;0.011)			17	53					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216172336	216172336	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216172336T>C	uc001hku.1	-	34	6937	c.6550A>G	c.(6550-6552)ACA>GCA	p.T2184A		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2184	Extracellular (Potential).|Fibronectin type-III 8.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AAATCATGTGTATGGTTTGAC	0.318										HNSCC(13;0.011)			29	89					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216243581	216243581	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216243581T>C	uc001hku.1	-	30	6298	c.5911A>G	c.(5911-5913)ATT>GTT	p.I1971V		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1971	Extracellular (Potential).|Fibronectin type-III 6.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTCACCTCAATGCTGTATCCA	0.478										HNSCC(13;0.011)			26	52					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216348787	216348787	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216348787G>A	uc001hku.1	-	21	4821	c.4434C>T	c.(4432-4434)ATC>ATT	p.I1478I	USH2A_uc001hkv.2_Silent_p.I1478I	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1478	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTGTGCTGTTGATTCCTTTAA	0.418										HNSCC(13;0.011)			17	49					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216405294	216405294	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216405294C>T	uc001hku.1	-	14	3380	c.2993_splice	c.e14+1	p.R998_splice	USH2A_uc001hkv.2_Splice_Site_p.R998_splice	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B						maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TAAAGATGTACCTTCCAGTCT	0.363										HNSCC(13;0.011)			34	179					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216420478	216420478	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216420478C>T	uc001hku.1	-	13	2645	c.2258G>A	c.(2257-2259)GGC>GAC	p.G753D	USH2A_uc001hkv.2_Missense_Mutation_p.G753D	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	753	Laminin EGF-like 5.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTTCACTGAGCCATGGAGGTT	0.428										HNSCC(13;0.011)			13	145					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216496929	216496929	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216496929G>A	uc001hku.1	-	8	1824	c.1437C>T	c.(1435-1437)TTC>TTT	p.F479F	USH2A_uc001hkv.2_Silent_p.F479F	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	479	Laminin N-terminal.|Extracellular (Potential).		F -> S.		maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGGCTTTTACGAACTCTTGAA	0.408										HNSCC(13;0.011)			16	172					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216497518	216497518	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216497518C>T	uc001hku.1	-	7	1707	c.1320G>A	c.(1318-1320)CAG>CAA	p.Q440Q	USH2A_uc001hkv.2_Silent_p.Q440Q	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	440	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACTTGGAAAGCTGAAGACAGT	0.358										HNSCC(13;0.011)			12	33					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216498859	216498859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216498859C>T	uc001hku.1	-	6	1318	c.931G>A	c.(931-933)GTC>ATC	p.V311I	USH2A_uc001hkv.2_Missense_Mutation_p.V311I	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	311	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AAAGGGTGGACCCGCGGGTGG	0.527										HNSCC(13;0.011)			19	81					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216595578	216595578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216595578C>T	uc001hku.1	-	2	488	c.101G>A	c.(100-102)CGA>CAA	p.R34Q	USH2A_uc001hkv.2_Missense_Mutation_p.R34Q	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	34	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GAAAAGACCTCGTGACTCAGT	0.453										HNSCC(13;0.011)			30	73					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216595616	216595616	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216595616G>A	uc001hku.1	-	2	450	c.63C>T	c.(61-63)ATC>ATT	p.I21I	USH2A_uc001hkv.2_Silent_p.I21I	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	21					maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AATAGGCAAAGATCAACATTT	0.428										HNSCC(13;0.011)			27	72					0	0	1	0	0
ESRRG	2104	broad.mit.edu	37	1	216680433	216680433	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216680433C>T	uc001hkw.1	-	7	1391	c.1225G>A	c.(1225-1227)GAA>AAA	p.E409K	ESRRG_uc001hky.1_Missense_Mutation_p.E386K|ESRRG_uc009xdp.1_Missense_Mutation_p.E386K|ESRRG_uc001hkz.1_Missense_Mutation_p.E347K|ESRRG_uc010puc.1_Missense_Mutation_p.E386K|ESRRG_uc001hla.1_Missense_Mutation_p.E386K|ESRRG_uc001hlb.1_Missense_Mutation_p.E386K|ESRRG_uc010pud.1_Missense_Mutation_p.E217K|ESRRG_uc001hlc.1_Missense_Mutation_p.E386K|ESRRG_uc001hld.1_Missense_Mutation_p.E386K|ESRRG_uc001hkx.1_Missense_Mutation_p.E421K|ESRRG_uc009xdo.1_Missense_Mutation_p.E386K	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	409					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	CGAGGGTCTTCCATGTGCTGG	0.507													46	85					0	0	1	0	0
ESRRG	2104	broad.mit.edu	37	1	216737577	216737577	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:216737577C>T	uc001hkw.1	-	5	1012	c.846G>A	c.(844-846)TGG>TGA	p.W282*	ESRRG_uc001hky.1_Nonsense_Mutation_p.W259*|ESRRG_uc009xdp.1_Nonsense_Mutation_p.W259*|ESRRG_uc001hkz.1_Nonsense_Mutation_p.W220*|ESRRG_uc010puc.1_Nonsense_Mutation_p.W259*|ESRRG_uc001hla.1_Nonsense_Mutation_p.W259*|ESRRG_uc001hlb.1_Nonsense_Mutation_p.W259*|ESRRG_uc010pud.1_Nonsense_Mutation_p.W90*|ESRRG_uc001hlc.1_Nonsense_Mutation_p.W259*|ESRRG_uc001hld.1_Nonsense_Mutation_p.W259*|ESRRG_uc001hkx.1_Nonsense_Mutation_p.W294*|ESRRG_uc009xdo.1_Nonsense_Mutation_p.W259*|ESRRG_uc001hle.1_Nonsense_Mutation_p.W259*	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	282					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	TATGCTTCGCCCATCCAATGA	0.423													28	60					0	0	1	0	0
RRP15	51018	broad.mit.edu	37	1	218458698	218458698	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:218458698G>A	uc001hlj.2	+	1	70	c.40G>A	c.(40-42)GAA>AAA	p.E14K		NM_016052	NP_057136	Q9Y3B9	RRP15_HUMAN	ribosomal RNA processing 15 homolog	14						mitochondrion|nucleolus	protein binding				0				all cancers(67;0.0315)|OV - Ovarian serous cystadenocarcinoma(81;0.0411)|GBM - Glioblastoma multiforme(131;0.06)|Epithelial(68;0.248)		GAGTGAGGAAGAAAACCTGAA	0.547													22	59					0	0	1	0	0
TGFB2	7042	broad.mit.edu	37	1	218609363	218609363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:218609363C>T	uc001hlm.2	+	5	1459	c.806C>T	c.(805-807)TCC>TTC	p.S269F	TGFB2_uc001hln.2_Missense_Mutation_p.S297F|TGFB2_uc010pue.1_Intron|TGFB2_uc001hlo.2_Intron	NM_003238	NP_003229	P61812	TGFB2_HUMAN	transforming growth factor, beta 2 isoform 2	269					activation of protein kinase activity|angiogenesis|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cardioblast differentiation|catagen|cell cycle arrest|cell death|cell growth|cell-cell junction organization|cell-cell signaling|collagen fibril organization|dopamine biosynthetic process|embryonic digestive tract development|eye development|glial cell migration|hair follicle morphogenesis|hemopoiesis|menstrual cycle phase|negative regulation of alkaline phosphatase activity|negative regulation of cell growth|negative regulation of epithelial cell proliferation|negative regulation of immune response|negative regulation of macrophage cytokine production|neuron development|neutrophil chemotaxis|odontogenesis|pathway-restricted SMAD protein phosphorylation|platelet activation|platelet degranulation|positive regulation of cardioblast differentiation|positive regulation of catagen|positive regulation of cell adhesion mediated by integrin|positive regulation of cell cycle|positive regulation of cell division|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of epithelial cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of heart contraction|positive regulation of immune response|positive regulation of integrin biosynthetic process|positive regulation of neuron apoptosis|positive regulation of ossification|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein secretion|positive regulation of stress-activated MAPK cascade|regulation of transforming growth factor-beta2 production|response to hypoxia|response to progesterone stimulus|salivary gland morphogenesis|SMAD protein import into nucleus|somatic stem cell division|transforming growth factor beta receptor signaling pathway	axon|extracellular matrix|extracellular space|neuronal cell body|platelet alpha granule lumen	beta-amyloid binding|cytokine activity|growth factor activity|protein heterodimerization activity|protein homodimerization activity|receptor signaling protein serine/threonine kinase activity|type II transforming growth factor beta receptor binding				0				all cancers(67;0.0459)|OV - Ovarian serous cystadenocarcinoma(81;0.049)|GBM - Glioblastoma multiforme(131;0.0776)		ACTATAAAGTCCACTAGGAAA	0.423													39	77					0	0	1	0	0
IARS2	55699	broad.mit.edu	37	1	220267642	220267642	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:220267642C>T	uc001hmc.2	+	1	188	c.84C>T	c.(82-84)CCC>CCT	p.P28P		NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	28					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	CCCGCCTTCCCTGCAGCCCGG	0.602													6	30					0	0	1	0	0
IARS2	55699	broad.mit.edu	37	1	220307845	220307845	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:220307845C>T	uc001hmc.2	+	15	2043	c.1939C>T	c.(1939-1941)CCT>TCT	p.P647S	IARS2_uc001hmd.2_5'Flank	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	647				P -> L (in Ref. 6; BAB14164).	isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	GAAGAGAGCACCTTATAAGTA	0.299													20	75					0	0	1	0	0
MARK1	4139	broad.mit.edu	37	1	220791985	220791985	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:220791985G>A	uc001hmn.3	+	9	1394	c.797G>A	c.(796-798)CGA>CAA	p.R266Q	MARK1_uc009xdw.2_Missense_Mutation_p.R266Q|MARK1_uc010pun.1_Missense_Mutation_p.R266Q|MARK1_uc001hmm.3_Missense_Mutation_p.R244Q	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	266	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		AAGGAACTGCGAGAGCGAGTT	0.338													33	100					0	0	1	0	0
MARK1	4139	broad.mit.edu	37	1	220792011	220792011	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:220792011C>T	uc001hmn.3	+	9	1420	c.823C>T	c.(823-825)CGT>TGT	p.R275C	MARK1_uc009xdw.2_Missense_Mutation_p.R275C|MARK1_uc010pun.1_Missense_Mutation_p.R275C|MARK1_uc001hmm.3_Missense_Mutation_p.R253C	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	275	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		AGGGAAGTACCGTATTCCCTT	0.353													10	109					0	0	1	0	0
C1orf115	79762	broad.mit.edu	37	1	220870013	220870013	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:220870013C>T	uc001hmp.1	+	2	486	c.369C>T	c.(367-369)TTC>TTT	p.F123F		NM_024709	NP_078985	Q9H7X2	CA115_HUMAN	hypothetical protein LOC79762	123	Helical; (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0273)		TGCAAGGCTTCGCTGCAGCCT	0.557													46	116					0	0	1	0	0
MOSC1	64757	broad.mit.edu	37	1	220970064	220970065	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:220970064_220970065CC>TT	uc001hms.2	+	3	777_778	c.529_530CC>TT	c.(529-531)CCC>TTC	p.P177F	MOSC1_uc001hmt.2_Missense_Mutation_p.P177F	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	177							molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		GAAGTCACAGCCCTACCGCCTG	0.604													12	35					0	0	1	0	0
MOSC1	64757	broad.mit.edu	37	1	220971262	220971262	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:220971262C>T	uc001hms.2	+	4	907	c.659C>T	c.(658-660)TCG>TTG	p.S220L	MOSC1_uc001hmt.2_Missense_Mutation_p.S220L	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	220	MOSC.						molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		TCTGAGGCGTCGCTGGCGGAT	0.438													14	138					0	0	1	0	0
DUSP10	11221	broad.mit.edu	37	1	221912437	221912437	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:221912437G>A	uc001hmy.1	-	2	832	c.650C>T	c.(649-651)TCC>TTC	p.S217F	DUSP10_uc001hmx.1_5'Flank|DUSP10_uc001hmz.1_Intron	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	217	Rhodanese.				inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		TTCCCTACAGGAAATCAAGTC	0.468													17	71					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222696018	222696018	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:222696018C>T	uc001hnh.1	-	9	2158	c.2100G>A	c.(2098-2100)AGG>AGA	p.R700R		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	700					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TCAGGCTCTTCCTCCTCTTGC	0.572													110	298					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222713440	222713440	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:222713440G>A	uc001hnh.1	-	4	1420	c.1362C>T	c.(1360-1362)GAC>GAT	p.D454D		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	454					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TCAAAATGAGGTCAACCTCTT	0.517													45	112					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717183	222717183	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:222717183G>A	uc001hnh.1	-	2	728	c.670C>T	c.(670-672)CAT>TAT	p.H224Y		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	224					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TCCCCAGCATGGACCATGGAG	0.642													26	39					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717466	222717466	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:222717466G>A	uc001hnh.1	-	2	445	c.387C>T	c.(385-387)CTC>CTT	p.L129L		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	129					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		AGAGGCCCGGGAGATTCCGGA	0.577													65	158					0	0	1	0	0
TAF1A	9015	broad.mit.edu	37	1	222737456	222737456	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:222737456C>T	uc009xdz.1	-	8	1095	c.906G>A	c.(904-906)CAG>CAA	p.Q302Q	TAF1A_uc009xdy.1_5'UTR|TAF1A_uc001hni.1_Silent_p.Q188Q|TAF1A_uc001hnj.2_Silent_p.Q302Q|TAF1A_uc001hnk.2_Silent_p.Q188Q	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	302					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		ATGGTACAATCTGATACAAAA	0.279													29	79					0	0	1	0	0
MIA3	375056	broad.mit.edu	37	1	222802183	222802183	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:222802183C>T	uc001hnl.2	+	4	1630	c.1621C>T	c.(1621-1623)CAC>TAC	p.H541Y	MIA3_uc009xea.1_Missense_Mutation_p.H377Y	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	541	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		AGGAATGCTCCACGAAGAAAA	0.413													16	146					0	0	1	0	0
MIA3	375056	broad.mit.edu	37	1	222818993	222818993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:222818993C>T	uc001hnl.2	+	7	3584	c.3575C>T	c.(3574-3576)TCG>TTG	p.S1192L	MIA3_uc009xea.1_Missense_Mutation_p.S1028L|MIA3_uc001hnm.2_Missense_Mutation_p.S70L	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1192	Helical; (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		GGAATTGCTTCGTTTGCCATT	0.383													17	46					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223285203	223285203	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:223285203G>A	uc001hnv.1	-	4	1617	c.1171C>T	c.(1171-1173)CTC>TTC	p.L391F	TLR5_uc001hnw.1_Missense_Mutation_p.L391F	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	391	Extracellular (Potential).|LRR 9.				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		TTGTCTCGGAGATCCAAGGTC	0.373													8	109					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223285643	223285643	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:223285643C>T	uc001hnv.1	-	4	1177	c.731G>A	c.(730-732)GGA>GAA	p.G244E	TLR5_uc001hnw.1_Missense_Mutation_p.G244E	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	244	Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		GCTAAAGTTTCCTGTGATGTC	0.468													41	107					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223285897	223285897	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:223285897G>A	uc001hnv.1	-	4	923	c.477C>T	c.(475-477)AGC>AGT	p.S159S	TLR5_uc001hnw.1_Silent_p.S159S	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	159	LRR 3.|Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		GAAGGTAAAGGCTACGAATCT	0.378													25	103					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223465828	223465828	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:223465828C>T	uc001hnx.2	-	2	948	c.314G>A	c.(313-315)GGA>GAA	p.G105E	SUSD4_uc001hny.3_Missense_Mutation_p.G105E|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Missense_Mutation_p.G105E|SUSD4_uc010pux.1_Intron	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	105	Sushi 1.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		GCCTAGGGTTCCATTAAAATG	0.478													65	146					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223465938	223465938	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:223465938C>T	uc001hnx.2	-	2	838	c.204G>A	c.(202-204)AGG>AGA	p.R68R	SUSD4_uc001hny.3_Silent_p.R68R|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Silent_p.R68R|SUSD4_uc010pux.1_Intron	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	68	Sushi 1.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		CGCTGGGGGTCCTGAAGCCAT	0.507													25	80					0	0	1	0	0
C1orf65	164127	broad.mit.edu	37	1	223567374	223567374	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:223567374C>T	uc001hoa.2	+	1	660	c.557C>T	c.(556-558)TCC>TTC	p.S186F		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	186										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		TGGTCCCCTTCCTCAGTTCCC	0.607													29	53					0	0	1	0	0
C1orf65	164127	broad.mit.edu	37	1	223567678	223567678	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:223567678G>A	uc001hoa.2	+	1	964	c.861G>A	c.(859-861)CTG>CTA	p.L287L		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	287	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GGGAGGAGCTGAAGCGCTCGG	0.657													3	9					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	224190263	224190263	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:224190263C>T	uc001hog.1	+	1		c.655C>T								Homo sapiens cDNA FLJ42980 fis, clone BRTHA2006735.																		AGGTGGTGTTCAGTTGCTGCT	0.378													35	117					0	0	1	0	0
FBXO28	23219	broad.mit.edu	37	1	224340893	224340893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:224340893C>T	uc001hoh.2	+	4	607	c.566C>T	c.(565-567)GCC>GTC	p.A189V	FBXO28_uc009xef.2_Intron|FBXO28_uc010pvc.1_5'UTR	NM_015176	NP_055991	Q9NVF7	FBX28_HUMAN	F-box protein 28 isoform a	189										ovary(2)|kidney(2)|lung(1)	5	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.0363)		TCTACCAGAGCCCCTCAACGA	0.323													22	81					0	0	1	0	0
FBXO28	23219	broad.mit.edu	37	1	224345107	224345107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:224345107C>T	uc001hoh.2	+	5	807	c.766C>T	c.(766-768)CCT>TCT	p.P256S	FBXO28_uc009xef.2_3'UTR|FBXO28_uc010pvc.1_Missense_Mutation_p.P51S	NM_015176	NP_055991	Q9NVF7	FBX28_HUMAN	F-box protein 28 isoform a	256										ovary(2)|kidney(2)|lung(1)	5	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.0363)		CAAGCAAAATCCTTCAAGACA	0.458													26	140					0	0	1	0	0
NVL	4931	broad.mit.edu	37	1	224437953	224437953	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:224437953G>A	uc001hok.2	-	19	2293	c.2250C>T	c.(2248-2250)CCC>CCT	p.P750P	NVL_uc001hol.2_Silent_p.P644P|NVL_uc010pvd.1_Silent_p.P659P|NVL_uc010pve.1_Silent_p.P561P|NVL_uc010pvf.1_RNA	NM_002533	NP_002524	O15381	NVL_HUMAN	nuclear VCP-like isoform 1	750						aggresome|cytoplasm|nucleolus	ATP binding|nucleoside-triphosphatase activity			skin(2)	2				GBM - Glioblastoma multiforme(131;0.00501)		GATCTGCAGGGGGCGGTAAAC	0.398													22	80					0	0	1	0	0
NVL	4931	broad.mit.edu	37	1	224437993	224437993	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:224437993G>A	uc001hok.2	-	19	2253	c.2210C>T	c.(2209-2211)CCG>CTG	p.P737L	NVL_uc001hol.2_Missense_Mutation_p.P631L|NVL_uc010pvd.1_Missense_Mutation_p.P646L|NVL_uc010pve.1_Missense_Mutation_p.P548L|NVL_uc010pvf.1_RNA	NM_002533	NP_002524	O15381	NVL_HUMAN	nuclear VCP-like isoform 1	737						aggresome|cytoplasm|nucleolus	ATP binding|nucleoside-triphosphatase activity			skin(2)	2				GBM - Glioblastoma multiforme(131;0.00501)		CAGGCGGCCCGGGCGCAGGAT	0.363													26	74					0	0	1	0	0
NVL	4931	broad.mit.edu	37	1	224475603	224475603	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:224475603G>A	uc001hok.2	-	14	1711	c.1668C>T	c.(1666-1668)TTC>TTT	p.F556F	NVL_uc001hol.2_Silent_p.F450F|NVL_uc010pvd.1_Silent_p.F465F|NVL_uc010pve.1_Silent_p.F367F|NVL_uc010pvf.1_RNA	NM_002533	NP_002524	O15381	NVL_HUMAN	nuclear VCP-like isoform 1	556						aggresome|cytoplasm|nucleolus	ATP binding|nucleoside-triphosphatase activity			skin(2)	2				GBM - Glioblastoma multiforme(131;0.00501)		GAGCAACAATGAAATCATTCA	0.478													25	56					0	0	1	0	0
CNIH3	149111	broad.mit.edu	37	1	224804900	224804900	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:224804900C>T	uc001hos.1	+	1	722	c.24C>T	c.(22-24)TTC>TTT	p.F8F		NM_152495	NP_689708	Q8TBE1	CNIH3_HUMAN	cornichon homolog 3	8	Cytoplasmic (Potential).				intracellular signal transduction|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic shaft|postsynaptic membrane					0	Breast(184;0.218)			GBM - Glioblastoma multiforme(131;0.073)		TCGCTGCGTTCTGCTACATGC	0.597													96	375					0	0	1	0	0
LBR	3930	broad.mit.edu	37	1	225609926	225609926	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:225609926G>A	uc001hoy.2	-	3	362	c.219C>T	c.(217-219)TCC>TCT	p.S73S	LBR_uc001hoz.2_Silent_p.S73S|LBR_uc001hpa.1_Silent_p.S73S	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	73	Nucleoplasmic (Potential).				cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		CTCGGCGTCTGGAAGGGGAAC	0.532													8	77					0	0	1	0	0
ENAH	55740	broad.mit.edu	37	1	225702509	225702509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:225702509G>A	uc001hpc.1	-	7	1460	c.1007C>T	c.(1006-1008)CCC>CTC	p.P336L	ENAH_uc001hpd.1_Missense_Mutation_p.P336L|ENAH_uc001hpb.1_5'UTR	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	336	Pro-rich.				axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding			ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		aggtggagggggccctggggg	0.075													7	14					0	0	1	0	0
ENAH	55740	broad.mit.edu	37	1	225702558	225702558	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:225702558G>A	uc001hpc.1	-	7	1411	c.958C>T	c.(958-960)CCA>TCA	p.P320S	ENAH_uc001hpd.1_Missense_Mutation_p.P320S|ENAH_uc001hpb.1_5'UTR	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	320	Pro-rich.				axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding			ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		ggccctggtgggagtggtgga	0.149													13	36					0	0	1	0	0
TMEM63A	9725	broad.mit.edu	37	1	226065251	226065251	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226065251C>A	uc001hpm.1	-	3	280	c.30G>T	c.(28-30)TGG>TGT	p.W10C	TMEM63A_uc010pvi.1_Missense_Mutation_p.W10C	NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	10						integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					CCTTGGACTGCCACAGCTCCA	0.592											OREG0014291	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	40					6.42651e-13	6.45361e-13	1	1	0
PYCR2	29920	broad.mit.edu	37	1	226108237	226108237	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226108237G>A	uc001hpq.2	-	7	1036	c.881C>T	c.(880-882)TCC>TTC	p.S294F	LEFTY1_uc010pvj.1_Intron|PYCR2_uc001hpp.2_Missense_Mutation_p.S227F|PYCR2_uc001hpr.2_Missense_Mutation_p.S247F	NM_013328	NP_037460	Q96C36	P5CR2_HUMAN	pyrroline-5-carboxylate reductase family, member	294					proline biosynthetic process	cytoplasm	binding|pyrroline-5-carboxylate reductase activity				0	Breast(184;0.197)				L-Proline(DB00172)|NADH(DB00157)	GACTGTGGGGGATTCCAGCTT	0.572													50	108					0	0	1	0	0
MIXL1	83881	broad.mit.edu	37	1	226413318	226413318	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226413318G>A	uc010pvm.1	+	2	504	c.504G>A	c.(502-504)ACG>ACA	p.T168T		NM_031944	NP_114150	Q9H2W2	MIXL1_HUMAN	Mix-like homeobox protein 1	168					cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.109)		GAACTGAAACGAAATGTCTGA	0.557													37	70					0	0	1	0	0
LIN9	286826	broad.mit.edu	37	1	226453307	226453307	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226453307G>A	uc001hqa.2	-	10	1323	c.1013C>T	c.(1012-1014)CCG>CTG	p.P338L	LIN9_uc001hqb.2_Missense_Mutation_p.P303L|LIN9_uc001hqc.2_Missense_Mutation_p.P270L|LIN9_uc009xel.1_Missense_Mutation_p.P303L	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	322					cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		ACTTCTCCACGGCGACTGTCC	0.318													16	50					0	0	1	0	0
LIN9	286826	broad.mit.edu	37	1	226483628	226483628	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226483628C>T	uc001hqa.2	-	4	537	c.227G>A	c.(226-228)CGA>CAA	p.R76Q	LIN9_uc001hqb.2_Intron|LIN9_uc001hqc.2_Missense_Mutation_p.R8Q|LIN9_uc009xel.1_Intron	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	60	Sufficient for interaction with RB1.				cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		AAGTCGACTTCGTTTTGAATT	0.348													5	83					0	0	1	0	0
LIN9	286826	broad.mit.edu	37	1	226496869	226496869	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226496869G>A	uc001hqa.2	-	1	330	c.20C>T	c.(19-21)CCT>CTT	p.P7L	LIN9_uc001hqb.2_Missense_Mutation_p.P7L|LIN9_uc001hqc.2_Intron|LIN9_uc009xel.1_Missense_Mutation_p.P7L	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	Error:Variant_position_missing_in_Q5TKA1_after_alignment					cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		CTTTTTCAAAGGCTGCCCGCC	0.532													22	42					0	0	1	0	0
PARP1	142	broad.mit.edu	37	1	226549171	226549171	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226549171G>A	uc001hqd.3	-	23	3206	c.3035C>T	c.(3034-3036)TCC>TTC	p.S1012F		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	1012	PARP catalytic.				cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		TTACCACAGGGAGGTCTTAAA	0.478								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					5	38					0	0	1	0	0
PARP1	142	broad.mit.edu	37	1	226564933	226564933	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226564933G>A	uc001hqd.3	-	13	1988	c.1817C>T	c.(1816-1818)TCC>TTC	p.S606F		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	606					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		ATCCTCCTTGGACGGCATCTG	0.473								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					112	313					0	0	1	0	0
PARP1	142	broad.mit.edu	37	1	226570804	226570804	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226570804G>A	uc001hqd.3	-	8	1263	c.1092C>T	c.(1090-1092)TCC>TCT	p.S364S		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	364					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		TGGCCGCCACGGAGGCGCTGG	0.512								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					85	280					0	0	1	0	0
ITPKB	3707	broad.mit.edu	37	1	226822414	226822414	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226822414G>A	uc010pvo.1	-	8	3139	c.2799C>T	c.(2797-2799)GTC>GTT	p.V933V		NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	933							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				TCAGGATGTCGACGAGGTTAT	0.667													14	26					0	0	1	0	0
ITPKB	3707	broad.mit.edu	37	1	226923820	226923820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:226923820G>A	uc010pvo.1	-	2	1680	c.1340C>T	c.(1339-1341)TCC>TTC	p.S447F	ITPKB_uc001hqh.2_Missense_Mutation_p.S447F	NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	447							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				CAGCGTTGGGGACCCTCCCTC	0.706													27	70					0	0	1	0	0
PSEN2	5664	broad.mit.edu	37	1	227071564	227071564	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:227071564C>T	uc009xeo.1	+	5	727	c.300C>T	c.(298-300)ATC>ATT	p.I100I	PSEN2_uc009xep.1_Silent_p.I100I|PSEN2_uc001hqk.2_RNA	NM_000447	NP_000438	P49810	PSN2_HUMAN	presenilin 2 isoform 1	100	Helical; (Potential).				amyloid precursor protein catabolic process|anti-apoptosis|apoptosis|beta-amyloid metabolic process|calcium ion transport|induction of apoptosis by extracellular signals|intracellular signal transduction|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity	apical plasma membrane|axon|cell cortex|cell surface|centrosome|ciliary rootlet|dendritic shaft|endoplasmic reticulum membrane|Golgi membrane|growth cone|integral to plasma membrane|kinetochore|lysosomal membrane|membrane raft|mitochondrial inner membrane|neuromuscular junction|neuronal cell body|nuclear inner membrane|perinuclear region of cytoplasm|Z disc	aspartic-type endopeptidase activity|protein binding			lung(2)	2		Prostate(94;0.0771)				TGTGCATGATCGTGGTGGTAG	0.607													28	83					0	0	1	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227192761	227192761	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:227192761G>A	uc001hqr.2	-	34	5747	c.4804C>T	c.(4804-4806)CCA>TCA	p.P1602S	CDC42BPA_uc001hqq.2_Missense_Mutation_p.P901S|CDC42BPA_uc001hqs.2_Missense_Mutation_p.P1521S|CDC42BPA_uc009xes.2_Missense_Mutation_p.P1574S|CDC42BPA_uc010pvs.1_Missense_Mutation_p.P1582S|CDC42BPA_uc001hqp.2_Missense_Mutation_p.P820S|CDC42BPA_uc001hqt.2_Missense_Mutation_p.P480S	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	1615					actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				GTGATAGATGGAATACTGACT	0.517													28	99					0	0	1	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227216844	227216844	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:227216844G>A	uc001hqr.2	-	29	4784	c.3841C>T	c.(3841-3843)CCT>TCT	p.P1281S	CDC42BPA_uc001hqq.2_Missense_Mutation_p.P580S|CDC42BPA_uc001hqs.2_Missense_Mutation_p.P1200S|CDC42BPA_uc009xes.2_Missense_Mutation_p.P1253S|CDC42BPA_uc010pvs.1_Missense_Mutation_p.P1261S|CDC42BPA_uc001hqp.2_Missense_Mutation_p.P437S|CDC42BPA_uc001hqt.2_Missense_Mutation_p.P159S|CDC42BPA_uc001hqu.1_Missense_Mutation_p.P488S	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	1294	CNH.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				GCTGACATAGGAAAAAGTCGT	0.433													12	53					0	0	1	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227400879	227400879	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:227400879G>A	uc001hqr.2	-	3	1255	c.312C>T	c.(310-312)GCC>GCT	p.A104A	CDC42BPA_uc001hqs.2_Silent_p.A104A|CDC42BPA_uc009xes.2_Silent_p.A104A|CDC42BPA_uc010pvs.1_Silent_p.A104A	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	104	Protein kinase.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				ATATTTTCATGGCAAACACTT	0.229													15	108					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	227618340	227618340	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:227618340G>A	uc001hqv.2	+	4		c.1575G>A								Homo sapiens cDNA clone IMAGE:5270051.																		GCTGTGGGTCGAAGATATGCT	0.502													15	51					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	227618464	227618464	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:227618464C>T	uc001hqv.2	+	4		c.1699C>T								Homo sapiens cDNA clone IMAGE:5270051.																		AGTACAAGATCCCGGACTGGT	0.488													7	18					0	0	1	0	0
ZNF678	339500	broad.mit.edu	37	1	227843293	227843293	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:227843293C>T	uc001hqw.1	+	4	1687	c.1342C>T	c.(1342-1344)CTT>TTT	p.L448F	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	503					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				ATCCTCAATCCTTAGTAAGCA	0.378													26	78					0	0	1	0	0
WNT3A	89780	broad.mit.edu	37	1	228210584	228210584	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228210584C>T	uc001hrq.1	+	2	366	c.288C>T	c.(286-288)GCC>GCT	p.A96A	WNT3A_uc001hrp.1_Silent_p.A96A	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	96					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				ACAGCCTGGCCATCTTCGGGC	0.652													28	40					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228402555	228402555	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228402555C>T	uc009xez.1	+	5	1628	c.1584C>T	c.(1582-1584)TCC>TCT	p.S528S	OBSCN_uc001hsn.2_Silent_p.S528S|uc001hsm.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	528	Fibronectin type-III 1.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGGAGAGTTCCGTGATTCTCA	0.592													10	19					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228461637	228461637	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228461637C>A	uc009xez.1	+	18	5348	c.5304C>A	c.(5302-5304)GCC>GCA	p.A1768A	OBSCN_uc001hsn.2_Silent_p.A1768A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1768	Fibronectin type-III 2.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ATGAGACAGCCAGCCAGGGGG	0.657													4	12					0.00909568	0.00909834	1	1	0
OBSCN	84033	broad.mit.edu	37	1	228467731	228467731	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228467731G>A	uc009xez.1	+	28	7650	c.7606G>A	c.(7606-7608)GGT>AGT	p.G2536S	OBSCN_uc001hsn.2_Missense_Mutation_p.G2536S|OBSCN_uc001hsp.1_Missense_Mutation_p.G235S|OBSCN_uc001hsq.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2536	Ig-like 24.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGCTGATGCTGGTGTCTACCG	0.612													4	9					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228467761	228467761	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228467761C>T	uc009xez.1	+	28	7680	c.7636C>T	c.(7636-7638)CAC>TAC	p.H2546Y	OBSCN_uc001hsn.2_Missense_Mutation_p.H2546Y|OBSCN_uc001hsp.1_Missense_Mutation_p.H245Y|OBSCN_uc001hsq.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2546	Ig-like 24.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGGCAGTGCCCACAGCAGCAC	0.617													5	13					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228469732	228469732	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228469732G>A	uc009xez.1	+	31	8340	c.8296G>A	c.(8296-8298)GAC>AAC	p.D2766N	OBSCN_uc001hsn.2_Missense_Mutation_p.D2766N|OBSCN_uc001hsp.1_Missense_Mutation_p.D465N|OBSCN_uc001hsq.1_Missense_Mutation_p.D22N	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2766	Ig-like 27.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GAGTGCCAGCGACCCGGCCAT	0.617													18	25					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228473972	228473972	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228473972G>A	uc009xez.1	+	34	9242	c.9198G>A	c.(9196-9198)CGG>CGA	p.R3066R	OBSCN_uc001hsn.2_Silent_p.R3066R|OBSCN_uc001hsq.1_Silent_p.R322R	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3066	Ig-like 30.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGACCCTGCGGCAGCTGGCGC	0.657													3	8					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228474494	228474494	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228474494C>T	uc009xez.1	+	35	9342	c.9298C>T	c.(9298-9300)CGG>TGG	p.R3100W	OBSCN_uc001hsn.2_Missense_Mutation_p.R3100W|OBSCN_uc001hsq.1_Missense_Mutation_p.R356W	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3100	Ig-like 31.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CGTCTTCTCCCGGGAGCTCAC	0.612													20	42					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228479639	228479639	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228479639G>A	uc009xez.1	+	39	10424	c.10380G>A	c.(10378-10380)GAG>GAA	p.E3460E	OBSCN_uc001hsn.2_Silent_p.E3460E|OBSCN_uc001hsq.1_Silent_p.E716E	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3460	Ig-like 35.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGAATGAAGAGGCCGTGGAAG	0.587													14	32					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228479753	228479753	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228479753G>A	uc009xez.1	+	39	10538	c.10494G>A	c.(10492-10494)CAG>CAA	p.Q3498Q	OBSCN_uc001hsn.2_Silent_p.Q3498Q|OBSCN_uc001hsq.1_Silent_p.Q754Q	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3498	Ig-like 35.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TCCTGAGGCAGGAGGGGACCA	0.627													29	65					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228480406	228480406	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228480406C>T	uc009xez.1	+	40	10830	c.10786C>T	c.(10786-10788)CGT>TGT	p.R3596C	OBSCN_uc001hsn.2_Missense_Mutation_p.R3596C|OBSCN_uc001hsq.1_Missense_Mutation_p.R852C	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3596	Ig-like 36.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCTGCAGATTCGTGGCCTGGC	0.602													53	127					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228481217	228481217	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228481217C>T	uc009xez.1	+	41	11075	c.11031C>T	c.(11029-11031)GCC>GCT	p.A3677A	OBSCN_uc001hsn.2_Silent_p.A3677A|OBSCN_uc001hsq.1_Silent_p.A933A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3677	Ig-like 37.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGACGGGGCCAGGTGTGAGC	0.647													35	56					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228482721	228482721	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228482721C>T	uc009xez.1	+	43	11680	c.11636C>T	c.(11635-11637)ACC>ATC	p.T3879I	OBSCN_uc001hsn.2_Missense_Mutation_p.T3879I|OBSCN_uc001hsq.1_Missense_Mutation_p.T1135I	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3879	Ig-like 39.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGGAGAGGACCTCGGCCACA	0.582													35	89					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228505603	228505603	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228505603G>A	uc009xez.1	+	53	13904	c.13860G>A	c.(13858-13860)CCG>CCA	p.P4620P	OBSCN_uc001hsn.2_Silent_p.P4620P	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4620					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGAGCCACCGAAGCCTGTGC	0.667													3	11					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228509173	228509173	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228509173G>A	uc009xez.1	+	55	14675	c.14631G>A	c.(14629-14631)GTG>GTA	p.V4877V	OBSCN_uc001hsn.2_Silent_p.V4877V	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4877	IQ.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGCAGCTGTGAAGATCCAGG	0.597													6	9					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228509413	228509413	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228509413G>A	uc009xez.1	+	55	14915	c.14871G>A	c.(14869-14871)CTG>CTA	p.L4957L	OBSCN_uc001hsn.2_Silent_p.L4957L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4957	Ig-like 48.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCTCTCTGCTGATCACTGGCC	0.612													22	53					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228509866	228509866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228509866C>T	uc009xez.1	+	55	15368	c.15324C>T	c.(15322-15324)GCC>GCT	p.A5108A	OBSCN_uc001hsn.2_Silent_p.A5108A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5108					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGACTCCTGCCCCTGTGGTGC	0.602													10	19					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228525050	228525050	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228525050C>T	uc009xez.1	+	66	16810	c.16766C>T	c.(16765-16767)TCC>TTC	p.S5589F	OBSCN_uc001hsn.2_Missense_Mutation_p.S5589F|OBSCN_uc001hsr.1_Missense_Mutation_p.S217F	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5589					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGGAGTCTTCCTCAGAGTCA	0.647													4	15					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228525070	228525070	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228525070G>A	uc009xez.1	+	66	16830	c.16786G>A	c.(16786-16788)GAT>AAT	p.D5596N	OBSCN_uc001hsn.2_Missense_Mutation_p.D5596N|OBSCN_uc001hsr.1_Missense_Mutation_p.D224N	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5596					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGAGGACGGCGATGCCCGAGG	0.642													4	12					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228525721	228525721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228525721G>A	uc009xez.1	+	67	16921	c.16877G>A	c.(16876-16878)GGC>GAC	p.G5626D	OBSCN_uc001hsn.2_Missense_Mutation_p.G5626D|OBSCN_uc001hsr.1_Missense_Mutation_p.G254D	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5626	SH3.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CTGCGGGAAGGCCAGTATGTG	0.632													9	12					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228525785	228525785	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228525785C>T	uc009xez.1	+	67	16985	c.16941C>T	c.(16939-16941)ACC>ACT	p.T5647T	OBSCN_uc001hsn.2_Silent_p.T5647T|OBSCN_uc001hsr.1_Silent_p.T275T	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5647	SH3.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCAAGCCCACCAAGTCCAGCC	0.652													6	15					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228526038	228526038	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228526038G>A	uc009xez.1	+	68	17093	c.17049G>A	c.(17047-17049)GAG>GAA	p.E5683E	OBSCN_uc001hsn.2_Silent_p.E5683E|OBSCN_uc001hsr.1_Silent_p.E311E	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5683					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TCCCTGGGGAGGCTGTGTCTG	0.632													6	8					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228559458	228559458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228559458C>T	uc009xez.1	+	94	21023	c.20979C>T	c.(20977-20979)GCC>GCT	p.A6993A	OBSCN_uc001hsr.1_Silent_p.A1622A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6993	Pro-rich.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCGGGGGGGCCCCTATCAGGG	0.692													8	46					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228559601	228559601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228559601C>T	uc009xez.1	+	94	21166	c.21122C>T	c.(21121-21123)TCT>TTT	p.S7041F	OBSCN_uc001hsr.1_Missense_Mutation_p.S1670F	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7041	Pro-rich.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AAGCAGGGTTCTGCCCCCCAG	0.672													12	27					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228560541	228560541	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228560541C>T	uc009xez.1	+	94	22106	c.22062C>T	c.(22060-22062)CCC>CCT	p.P7354P	OBSCN_uc001hsr.1_Silent_p.P1983P	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7354					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCACGTGGCCCTGGCCAGGTG	0.657													9	9					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228562353	228562353	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228562353G>A	uc009xez.1	+	97	22607	c.22563G>A	c.(22561-22563)CTG>CTA	p.L7521L	OBSCN_uc001hsr.1_Silent_p.L2150L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7521	Ig-like 55.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TCCAGCTTCTGACCATCCTGG	0.622													25	65					0	0	1	0	0
RHOU	58480	broad.mit.edu	37	1	228879409	228879409	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:228879409G>A	uc001htf.2	+	3	1320	c.699G>A	c.(697-699)AAG>AAA	p.K233K		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	233					regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				AACAGCCAAAGAAGTCTAAAA	0.458													31	88					0	0	1	0	0
ACTA1	58	broad.mit.edu	37	1	229568311	229568311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:229568311C>T	uc001htm.2	-	3	551	c.446G>A	c.(445-447)AGG>AAG	p.R149K		NM_001100	NP_001091	P68133	ACTS_HUMAN	actin, alpha 1, skeletal muscle	149					muscle filament sliding|skeletal muscle fiber development|skeletal muscle thin filament assembly	actin filament|cytosol|stress fiber|striated muscle thin filament	ADP binding|ATP binding|myosin binding|structural constituent of cytoskeleton				0	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.167)			Dornase Alfa(DB00003)	ACCGGTGGTCCTGCCGGAGGC	0.502													20	48					0	0	1	0	0
ACTA1	58	broad.mit.edu	37	1	229568553	229568554	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:229568553_229568554GG>AA	uc001htm.2	-	3	308_309	c.203_204CC>TT	c.(202-204)ACC>ATT	p.T68I		NM_001100	NP_001091	P68133	ACTS_HUMAN	actin, alpha 1, skeletal muscle	68			T -> I (in NEM3).		muscle filament sliding|skeletal muscle fiber development|skeletal muscle thin filament assembly	actin filament|cytosol|stress fiber|striated muscle thin filament	ADP binding|ATP binding|myosin binding|structural constituent of cytoskeleton				0	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.167)			Dornase Alfa(DB00003)	GGTACTTCAGGGTCAGGATACC	0.584													31	82					0	0	1	0	0
TAF5L	27097	broad.mit.edu	37	1	229738200	229738200	+	Silent	SNP	G	A	A	rs143676179		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:229738200G>A	uc001htq.2	-	4	880	c.714C>T	c.(712-714)GCC>GCT	p.A238A	TAF5L_uc001htr.2_Silent_p.A238A	NM_014409	NP_055224	O75529	TAF5L_HUMAN	PCAF associated factor 65 beta isoform a	238					histone H3 acetylation|transcription from RNA polymerase II promoter	STAGA complex|transcription factor TFTC complex	sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	Breast(184;0.193)|Ovarian(103;0.249)	Prostate(94;0.167)				AGACCTCTAGGGCAGCCTCGT	0.552													11	109					0	0	1	0	0
URB2	9816	broad.mit.edu	37	1	229771485	229771485	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:229771485C>T	uc001hts.1	+	4	1261	c.1125C>T	c.(1123-1125)ATC>ATT	p.I375I	URB2_uc009xfd.1_Silent_p.I375I	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	375						nucleolus				central_nervous_system(2)|ovary(1)	3						TCTACAACATCGCTGCCGACA	0.522													25	49					0	0	1	0	0
URB2	9816	broad.mit.edu	37	1	229772115	229772115	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:229772115C>T	uc001hts.1	+	4	1891	c.1755C>T	c.(1753-1755)GCC>GCT	p.A585A	URB2_uc009xfd.1_Silent_p.A585A	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	585						nucleolus				central_nervous_system(2)|ovary(1)	3						CCCTGCTGGCCCTTCTCCCGG	0.617													55	148					0	0	1	0	0
URB2	9816	broad.mit.edu	37	1	229772297	229772297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:229772297C>T	uc001hts.1	+	4	2073	c.1937C>T	c.(1936-1938)TCG>TTG	p.S646L	URB2_uc009xfd.1_Missense_Mutation_p.S646L	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	646						nucleolus				central_nervous_system(2)|ovary(1)	3						AACCTCCCTTCGTTGCTCCCA	0.478													79	255					0	0	1	0	0
URB2	9816	broad.mit.edu	37	1	229772656	229772656	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:229772656C>T	uc001hts.1	+	4	2432	c.2296C>T	c.(2296-2298)CTG>TTG	p.L766L	URB2_uc009xfd.1_Silent_p.L766L	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	766						nucleolus				central_nervous_system(2)|ovary(1)	3						GGCCAGTGTCCTGCTGAGAAC	0.448													29	66					0	0	1	0	0
GALNT2	2590	broad.mit.edu	37	1	230338999	230338999	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:230338999C>T	uc010pwa.1	+	3	409	c.337C>T	c.(337-339)CGA>TGA	p.R113*	GALNT2_uc010pvy.1_Nonsense_Mutation_p.R75*|GALNT2_uc010pvz.1_RNA	NM_004481	NP_004472	Q10471	GALT2_HUMAN	polypeptide N-acetylgalactosaminyltransferase 2	113	Lumenal (Potential).				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				TGATAAGCTTCGAATGGACAG	0.537													42	97					0	0	1	0	0
PGBD5	79605	broad.mit.edu	37	1	230492691	230492691	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:230492691G>A	uc010pwb.1	-	2	501	c.501C>T	c.(499-501)CTC>CTT	p.L167L	PGBD5_uc001htv.2_Silent_p.L266L	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	167						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		GCAGGGAGTCGAGGAAGGGCT	0.612													20	67					0	0	1	0	0
COG2	22796	broad.mit.edu	37	1	230798890	230798890	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:230798890C>T	uc001htw.2	+	4	455	c.304C>T	c.(304-306)CTT>TTT	p.L102F	COG2_uc001htx.2_Missense_Mutation_p.L102F|COG2_uc010pwc.1_5'UTR	NM_007357	NP_031383	Q14746	COG2_HUMAN	component of oligomeric golgi complex 2 isoform	102					Golgi organization|intra-Golgi vesicle-mediated transport|intracellular protein transport|oligosaccharide biosynthetic process|protein glycosylation	Golgi membrane|Golgi stack|Golgi transport complex	protein binding|protein transporter activity				0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				TTTAAAGAGCCTTAGATCGTC	0.318													9	64					0	0	1	0	0
AGT	183	broad.mit.edu	37	1	230841825	230841825	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:230841825C>T	uc001hty.3	-	3	1486	c.978G>A	c.(976-978)CAG>CAA	p.Q326Q	AGT_uc009xfe.2_Silent_p.Q326Q|AGT_uc009xff.2_Silent_p.Q298Q	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	326					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	AGAAGTTGTCCTGGATGTCAC	0.592													26	101					0	0	1	0	0
AGT	183	broad.mit.edu	37	1	230846180	230846180	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:230846180G>A	uc001hty.3	-	2	925	c.417C>T	c.(415-417)GTC>GTT	p.V139V	AGT_uc009xfe.2_Silent_p.V139V|AGT_uc009xff.2_Silent_p.V111V	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	139					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	GGGTGCCAAAGACAGCCGTTG	0.582													45	87					0	0	1	0	0
CAPN9	10753	broad.mit.edu	37	1	230916261	230916261	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:230916261G>A	uc001htz.1	+	11	1401	c.1288G>A	c.(1288-1290)GAA>AAA	p.E430K	CAPN9_uc009xfg.1_Missense_Mutation_p.E367K|CAPN9_uc001hua.1_Missense_Mutation_p.E404K	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	430	Domain III.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				TGACAAAGACGAACACCTGAA	0.517													32	83					0	0	1	0	0
CAPN9	10753	broad.mit.edu	37	1	230916267	230916267	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:230916267C>T	uc001htz.1	+	11	1407	c.1294C>T	c.(1294-1296)CTG>TTG	p.L432L	CAPN9_uc009xfg.1_Silent_p.L369L|CAPN9_uc001hua.1_Silent_p.L406L	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	432	Domain III.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				AGACGAACACCTGAACAAAGA	0.522													36	99					0	0	1	0	0
CAPN9	10753	broad.mit.edu	37	1	230928654	230928655	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:230928654_230928655GG>AA	uc001htz.1	+	17	1963_1964	c.1850_1851GG>AA	c.(1849-1851)CGG>CAA	p.R617Q	CAPN9_uc009xfg.1_Missense_Mutation_p.R554Q|CAPN9_uc001hua.1_Missense_Mutation_p.R591Q	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	617	EF-hand 3.|Domain IV.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				TATGAACTACGGACTGCACTGA	0.53													65	119					0	0	1	0	0
FAM89A	375061	broad.mit.edu	37	1	231155655	231155655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:231155655G>A	uc001hui.2	-	2	547	c.509C>T	c.(508-510)CCT>CTT	p.P170L	FAM89A_uc009xfm.2_Missense_Mutation_p.P181L|MIR1182_hsa-mir-1182|MI0006275_RNA	NM_198552	NP_940954	Q96GI7	FA89A_HUMAN	family with sequence similarity 89, member A	170											0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				GGAGGAGACAGGCAGTGACAA	0.577													6	64					0	0	1	0	0
TRIM67	440730	broad.mit.edu	37	1	231335984	231335984	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:231335984G>A	uc009xfn.1	+	4	1396	c.1354G>A	c.(1354-1356)GAC>AAC	p.D452N		NM_001004342	NP_001004342	Q6ZTA4	TRI67_HUMAN	tripartite motif-containing 67	452	COS.					cytoplasm|cytoskeleton	zinc ion binding			ovary(2)|breast(1)|kidney(1)	4	Breast(184;0.0871)	all_cancers(173;0.189)|Prostate(94;0.167)				CAAGGAGAACGACCCCTCCGG	0.542													33	79					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232551301	232551301	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:232551301G>A	uc001hvg.2	-	17	4859	c.4701C>T	c.(4699-4701)CTC>CTT	p.L1567L	SIPA1L2_uc001hvf.2_Silent_p.L641L	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1567					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				CTGTGTCCGGGAGGGGCATCA	0.542													39	123					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232561373	232561373	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:232561373G>A	uc001hvg.2	-	16	4750	c.4592C>T	c.(4591-4593)CCG>CTG	p.P1531L	SIPA1L2_uc001hvf.2_Missense_Mutation_p.P605L	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1531					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GTGGGCCCGCGGAGGCAGCGT	0.667													9	15					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232581315	232581315	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:232581315G>A	uc001hvg.2	-	9	3471	c.3313C>T	c.(3313-3315)CGA>TGA	p.R1105*	SIPA1L2_uc001hvf.2_Nonsense_Mutation_p.R179*	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1105					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GAGGTGCTTCGAGGAATGGCA	0.637													16	54					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232651033	232651033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:232651033G>A	uc001hvg.2	-	1	211	c.53C>T	c.(52-54)TCT>TTT	p.S18F		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	18					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GAACTTTGAAGAGGCTCTGCC	0.453													8	66					0	0	1	0	0
KIAA1383	54627	broad.mit.edu	37	1	232941087	232941087	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:232941087C>T	uc001hvh.2	+	1	450	c.318C>T	c.(316-318)ATC>ATT	p.I106I		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	Error:Variant_position_missing_in_Q9P2G4_after_alignment										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				TTCCGCAAATCTCGCGAGATA	0.602													15	56					0	0	1	0	0
KIAA1383	54627	broad.mit.edu	37	1	232941806	232941806	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:232941806G>A	uc001hvh.2	+	1	1169	c.1037G>A	c.(1036-1038)GGA>GAA	p.G346E		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	204										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				ACAGGAGGAGGAGCGGAGGTC	0.632													15	39					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233134126	233134126	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233134126C>A	uc001hvl.2	-	32	5897	c.5662G>T	c.(5662-5664)GGA>TGA	p.G1888*	PCNXL2_uc001hvk.1_Nonsense_Mutation_p.G540*|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1888						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GCCCCTCCTCCGTCCACGTCT	0.617													8	47					7.48243e-07	7.49749e-07	1	1	0
PCNXL2	80003	broad.mit.edu	37	1	233150438	233150438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233150438C>T	uc001hvl.2	-	28	5160	c.4925G>A	c.(4924-4926)GGA>GAA	p.G1642E	PCNXL2_uc001hvk.1_Missense_Mutation_p.G294E|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1642						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AGCGGCTGTTCCCAGAGCTCT	0.527													23	61					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233150519	233150519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233150519G>A	uc001hvl.2	-	28	5079	c.4844C>T	c.(4843-4845)TCA>TTA	p.S1615L	PCNXL2_uc001hvk.1_Missense_Mutation_p.S267L|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1615						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CAGGGTCGTTGAAGGCTGAAA	0.502													16	51					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233190032	233190032	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233190032G>A	uc001hvl.2	-	25	4568	c.4333C>T	c.(4333-4335)CGA>TGA	p.R1445*	PCNXL2_uc001hvk.1_Nonsense_Mutation_p.R97*|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1445						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TCCAGTCCTCGAAGTTGAAAG	0.388													9	27					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233270846	233270846	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233270846G>A	uc001hvl.2	-	21	3985	c.3750C>T	c.(3748-3750)TTC>TTT	p.F1250F	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1250	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AGATGACAGTGAAGCTCAAGT	0.393													32	58					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233275579	233275579	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233275579G>A	uc001hvl.2	-	20	3775	c.3540C>T	c.(3538-3540)TTC>TTT	p.F1180F	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1180						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AGAGTCTTTCGAACCACATTA	0.323													30	11					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233296028	233296028	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233296028C>T	uc001hvl.2	-	19	3752	c.3517_splice	c.e19+1	p.D1173_splice	PCNXL2_uc001hvm.1_Splice_Site|PCNXL2_uc009xfu.2_Splice_Site|PCNXL2_uc001hvp.1_Splice_Site|PCNXL2_uc009xfv.1_Splice_Site	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2							integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ATATTACTAACCTCTCACTTC	0.348													14	29					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233296076	233296076	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233296076G>A	uc001hvl.2	-	19	3705	c.3470C>T	c.(3469-3471)TCA>TTA	p.S1157L	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1157						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AATGGGGTGTGAAATCCACAT	0.443													23	47					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233297093	233297093	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233297093C>T	uc001hvl.2	-	18	3525	c.3290G>A	c.(3289-3291)TGG>TAG	p.W1097*	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1097						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GATGAGATCCCATTTTAAGAC	0.473													5	23					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233313560	233313560	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233313560C>T	uc001hvl.2	-	17	3496	c.3261G>A	c.(3259-3261)ATG>ATA	p.M1087I	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1087						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CTGAATCTTTCATCTTCTTGG	0.463													15	33					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233353658	233353659	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233353658_233353659GC>AA	uc001hvl.2	-	12	2912_2913	c.2677_2678GC>TT	c.(2677-2679)GCC>TTC	p.A893F	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA|PCNXL2_uc001hvq.1_Missense_Mutation_p.A192F	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	893						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TATTGGTGAGGCGGGGTCAGGC	0.436													5	34					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233372591	233372591	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233372591C>T	uc001hvl.2	-	9	2593	c.2358G>A	c.(2356-2358)CGG>CGA	p.R786R	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA|PCNXL2_uc001hvq.1_Silent_p.R85R	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	786						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ATGTACGTACCCGTGGGGTTT	0.507													38	160					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233393906	233393906	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233393906C>T	uc001hvl.2	-	5	1937	c.1702G>A	c.(1702-1704)GGA>AGA	p.G568R	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	568						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GGCATTTGTCCTTCCTTAGCC	0.423													14	54					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394038	233394038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233394038C>T	uc001hvl.2	-	5	1805	c.1570G>A	c.(1570-1572)GAA>AAA	p.E524K	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	524						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TGCCTCTTTTCATGGCTGGAC	0.502													19	50					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394087	233394087	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233394087C>T	uc001hvl.2	-	5	1756	c.1521G>A	c.(1519-1521)GGG>GGA	p.G507G	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	507						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GGCCTTCCTTCCCCACCTTAG	0.547													18	49					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394269	233394269	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233394269C>T	uc001hvl.2	-	5	1574	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	447						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CCATTGCCTTCGGGACAGGGA	0.567													55	93					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233397849	233397849	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233397849G>A	uc001hvl.2	-	3	657	c.422C>T	c.(421-423)CCC>CTC	p.P141L	PCNXL2_uc009xfu.2_5'Flank|PCNXL2_uc009xfv.1_5'Flank	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	141						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GCAGCGGAGGGGAGGCGTGGA	0.488													16	163					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233489572	233489572	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233489572G>A	uc001hvt.3	+	3	1267	c.1006G>A	c.(1006-1008)GAA>AAA	p.E336K	KIAA1804_uc001hvs.1_Missense_Mutation_p.E336K	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	336	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GCTGCTGTGGGAACTGCTCAC	0.488													33	66					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233507881	233507881	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233507881G>A	uc001hvt.3	+	6	1911	c.1650G>A	c.(1648-1650)ATG>ATA	p.M550I	KIAA1804_uc001hvs.1_Missense_Mutation_p.M550I	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	550					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GCCCCACAATGATGCCCCGAC	0.557													31	80					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514787	233514787	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233514787C>T	uc001hvt.3	+	9	2296	c.2035C>T	c.(2035-2037)CAG>TAG	p.Q679*	KIAA1804_uc001hvu.3_Nonsense_Mutation_p.Q125*	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	679					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GAAAGATGCTCAGAGAGAGAA	0.463													43	93					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514953	233514953	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233514953C>T	uc001hvt.3	+	9	2462	c.2201C>T	c.(2200-2202)GCT>GTT	p.A734V	KIAA1804_uc001hvu.3_Missense_Mutation_p.A180V	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	734					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GCATCGGTGGCTCTGGGACTG	0.527													25	70					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233515037	233515037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233515037G>A	uc001hvt.3	+	9	2546	c.2285G>A	c.(2284-2286)GGA>GAA	p.G762E	KIAA1804_uc001hvu.3_Missense_Mutation_p.G208E	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	762					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				AAACGAGAGGGAATCTTCCAG	0.602													21	81					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233515108	233515108	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233515108G>A	uc001hvt.3	+	9	2617	c.2356G>A	c.(2356-2358)GAG>AAG	p.E786K	KIAA1804_uc001hvu.3_Missense_Mutation_p.E232K	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	786					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CACCTGTGGGGAGGCCAGCAG	0.597													8	79					0	0	1	0	0
KCNK1	3775	broad.mit.edu	37	1	233749941	233749941	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233749941C>T	uc010pxo.1	+	1	192	c.24C>T	c.(22-24)AGC>AGT	p.S8S		NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	8	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TGGCCGGCAGCTCGTGCGTGC	0.423													7	20					0	0	1	0	0
KCNK1	3775	broad.mit.edu	37	1	233807177	233807177	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:233807177C>T	uc010pxo.1	+	3	1080	c.912C>T	c.(910-912)ATC>ATT	p.I304I	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	304	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TCTCCTCGATCACAGACCAGG	0.488													8	66					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234041375	234041375	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:234041375G>A	uc001hvy.1	+	2	299	c.154G>A	c.(154-156)GAG>AAG	p.E52K		NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	Error:Variant_position_missing_in_Q8IY50_after_alignment					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			GGCGATTAAGGAGGATCTGAA	0.632													24	74					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367233	234367233	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:234367233G>A	uc001hwa.1	+	2	375	c.147G>A	c.(145-147)GGG>GGA	p.G49G	SLC35F3_uc001hvy.1_Silent_p.G118G	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	49					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			AGGCCGGCGGGAGAGCGAGTC	0.746													23	37					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367424	234367424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:234367424C>T	uc001hwa.1	+	2	566	c.338C>T	c.(337-339)CCG>CTG	p.P113L	SLC35F3_uc001hvy.1_Missense_Mutation_p.P182L	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	113	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TTATTCTTCCCGTTGTACTAC	0.592													10	195					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234452365	234452365	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:234452365C>T	uc001hwa.1	+	4	867	c.639C>T	c.(637-639)CTC>CTT	p.L213L	SLC35F3_uc001hvy.1_Silent_p.L282L	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	213	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			CCGCCATCCTCGCCATCGCTG	0.577													148	370					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234458964	234458964	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:234458964G>A	uc001hwa.1	+	7	1469	c.1241G>A	c.(1240-1242)AGA>AAA	p.R414K	SLC35F3_uc001hvy.1_Missense_Mutation_p.R483K	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	414					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			AAGAACAGAAGAGCCCGCCCT	0.577											OREG0014330	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	46					0	0	1	0	0
TARBP1	6894	broad.mit.edu	37	1	234553868	234553868	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:234553868G>A	uc001hwd.2	-	22	3667	c.3667C>T	c.(3667-3669)CCT>TCT	p.P1223S		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1223					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			AGAAATTGAGGGAATTTATGA	0.284													7	26					0	0	1	0	0
GNG4	2786	broad.mit.edu	37	1	235715446	235715446	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:235715446G>A	uc001hxe.3	-	4	645	c.191C>T	c.(190-192)CCC>CTC	p.P64L	GNG4_uc009xfz.2_Missense_Mutation_p.P64L|GNG4_uc001hxh.3_Missense_Mutation_p.P64L	NM_001098722	NP_001092192	P50150	GBG4_HUMAN	guanine nucleotide binding protein (G protein),	64					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|negative regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	heterotrimeric G-protein complex	signal transducer activity				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00168)|Prostate(94;0.0776)|Acute lymphoblastic leukemia(190;0.23)	OV - Ovarian serous cystadenocarcinoma(106;0.000882)			CTCGCGAAAGGGGTTTTCTGA	0.522													57	147					0	0	1	0	0
LYST	1130	broad.mit.edu	37	1	235969221	235969221	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:235969221G>A	uc001hxj.2	-	6	3390	c.3215C>T	c.(3214-3216)TCC>TTC	p.S1072F	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.S1072F	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1072					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			CACATTTATGGAAGAAATATG	0.383									Chediak-Higashi_syndrome				43	65					0	0	1	0	0
NID1	4811	broad.mit.edu	37	1	236205533	236205533	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236205533G>A	uc001hxo.2	-	4	914	c.812C>T	c.(811-813)ACC>ATC	p.T271I	NID1_uc009xgd.2_Missense_Mutation_p.T271I	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	271					cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	CACGCCATTGGTGGTGGCTGG	0.552													95	216					0	0	1	0	0
NID1	4811	broad.mit.edu	37	1	236205562	236205563	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236205562_236205563CC>TT	uc001hxo.2	-	4	884_885	c.782_783GG>AA	c.(781-783)TGG>TAA	p.W261*	NID1_uc009xgd.2_Nonsense_Mutation_p.W261*	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	261	NIDO.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	TCTCAAACACCCAGACACCCTG	0.554													70	229					0	0	1	0	0
NID1	4811	broad.mit.edu	37	1	236208779	236208779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236208779C>T	uc001hxo.2	-	3	832	c.730G>A	c.(730-732)GAA>AAA	p.E244K	NID1_uc009xgd.2_Missense_Mutation_p.E244K	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	244	NIDO.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	TCAACTGATTCCCTGTCATTA	0.363													26	60					0	0	1	0	0
NID1	4811	broad.mit.edu	37	1	236212147	236212147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236212147C>T	uc001hxo.2	-	2	470	c.368G>A	c.(367-369)CGA>CAA	p.R123Q	NID1_uc009xgd.2_Missense_Mutation_p.R123Q	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	123	NIDO.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	TAAGTCTTCTCGATAATAAAC	0.567													22	66					0	0	1	0	0
HEATR1	55127	broad.mit.edu	37	1	236755334	236755334	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236755334G>A	uc001hyd.1	-	11	1506	c.1381C>T	c.(1381-1383)CAT>TAT	p.H461Y		NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	461					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			ACAAACTGATGGAAAAGCTCT	0.353													27	104					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236898958	236898958	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236898958G>A	uc001hyf.2	+	8	925	c.721G>A	c.(721-723)GAT>AAT	p.D241N	ACTN2_uc001hyg.2_5'UTR|ACTN2_uc009xgi.1_Intron|ACTN2_uc010pxu.1_Intron	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	241	CH 2.|Actin-binding.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CCCTAAACCCGATGAAAGAGC	0.537													21	64					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236902620	236902620	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236902620C>T	uc001hyf.2	+	10	1099	c.895C>T	c.(895-897)CGC>TGC	p.R299C	ACTN2_uc001hyg.2_Missense_Mutation_p.R91C|ACTN2_uc009xgi.1_Missense_Mutation_p.R299C|ACTN2_uc010pxu.1_Intron|ACTN2_uc001hyh.2_5'UTR	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	299	Spectrin 1.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			ATGGATTCGTCGCACGATCCC	0.527													50	145					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236902625	236902625	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236902625G>A	uc001hyf.2	+	10	1104	c.900G>A	c.(898-900)ACG>ACA	p.T300T	ACTN2_uc001hyg.2_Silent_p.T92T|ACTN2_uc009xgi.1_Silent_p.T300T|ACTN2_uc010pxu.1_Intron|ACTN2_uc001hyh.2_5'UTR	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	300	Spectrin 1.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TTCGTCGCACGATCCCCTGGC	0.532													61	141					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236908011	236908011	+	Silent	SNP	C	T	T	rs34785693	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236908011C>T	uc001hyf.2	+	12	1545	c.1341C>T	c.(1339-1341)TTC>TTT	p.F447F	ACTN2_uc001hyg.2_Silent_p.F239F|ACTN2_uc009xgi.1_Silent_p.F447F|ACTN2_uc010pxu.1_Silent_p.F136F|ACTN2_uc001hyh.2_Silent_p.F135F	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	447	Spectrin 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			ACGAGGCGTTCGAGAGCGACC	0.637													40	21					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236925843	236925843	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236925843C>T	uc001hyf.2	+	21	2813	c.2609C>T	c.(2608-2610)TCG>TTG	p.S870L	ACTN2_uc001hyg.2_Missense_Mutation_p.S662L|ACTN2_uc009xgi.1_Missense_Mutation_p.S870L|ACTN2_uc010pxu.1_Missense_Mutation_p.S559L|ACTN2_uc001hyh.2_Missense_Mutation_p.S558L	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	870					focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CCCGCCTACTCGGGCCCAGGC	0.587													11	55					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236925888	236925888	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236925888C>T	uc001hyf.2	+	21	2858	c.2654C>T	c.(2653-2655)TCT>TTT	p.S885F	ACTN2_uc001hyg.2_Missense_Mutation_p.S677F|ACTN2_uc009xgi.1_Missense_Mutation_p.S885F|ACTN2_uc010pxu.1_Missense_Mutation_p.S574F|ACTN2_uc001hyh.2_Missense_Mutation_p.S573F	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	885					focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GCTGCGTTCTCTTCCGCACTC	0.567													11	39					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236925911	236925911	+	Missense_Mutation	SNP	G	A	A	rs142646143		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:236925911G>A	uc001hyf.2	+	21	2881	c.2677G>A	c.(2677-2679)GAT>AAT	p.D893N	ACTN2_uc001hyg.2_Missense_Mutation_p.D685N|ACTN2_uc009xgi.1_Missense_Mutation_p.D893N|ACTN2_uc010pxu.1_Missense_Mutation_p.D582N|ACTN2_uc001hyh.2_Missense_Mutation_p.D581N	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	893					focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CGGGGAGAGCGATCTGTGATG	0.507													11	29					0	0	1	0	0
MTR	4548	broad.mit.edu	37	1	237037098	237037099	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237037098_237037099CC>TT	uc001hyi.3	+	23	2854_2855	c.2431_2432CC>TT	c.(2431-2433)CCA>TTA	p.P811L	MTR_uc010pxw.1_Missense_Mutation_p.P404L|MTR_uc010pxx.1_Missense_Mutation_p.P760L|MTR_uc010pxy.1_Missense_Mutation_p.P665L	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	811	B12-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	AGTCATGACTCCATGTGATAAG	0.376													27	85					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237538048	237538048	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237538048C>T	uc001hyl.1	+	7	536	c.416C>T	c.(415-417)TCA>TTA	p.S139L		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	139	Cytoplasmic (By similarity).|MIR 1.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCCCGGTCTTCAACTGATAAG	0.453													6	10					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237604620	237604620	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237604620A>G	uc001hyl.1	+	13	1127	c.1007A>G	c.(1006-1008)GAA>GGA	p.E336G		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	336	Cytoplasmic (By similarity).|MIR 4.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCCCCTTAGGAAAAATTGGAT	0.358													24	55					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237617862	237617862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237617862C>T	uc001hyl.1	+	15	1584	c.1464C>T	c.(1462-1464)CTC>CTT	p.L488L		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	488	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGCAAAATCTCTTCCAGGAAG	0.428													4	16					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237753151	237753151	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237753151G>A	uc001hyl.1	+	30	3777	c.3657G>A	c.(3655-3657)AAG>AAA	p.K1219K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1219	Cytoplasmic (By similarity).|4 X approximate repeats.|B30.2/SPRY 2.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACTTTGGAAAGGATGTCAGCA	0.408													14	45					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237791147	237791148	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237791147_237791148GG>AA	uc001hyl.1	+	41	6327_6328	c.6207_6208GG>AA	c.(6205-6210)TGGGCT>TGAACT	p.2069_2070WA>*T		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2069_2070	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TGGTCCGATGGGCTCAGGAGTC	0.495													6	25					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237796914	237796914	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237796914C>T	uc001hyl.1	+	43	6712	c.6592C>T	c.(6592-6594)CGT>TGT	p.R2198C		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2198	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CAACTGTTGCCGTTTTCTCTG	0.388													45	139					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237936946	237936946	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237936946C>T	uc001hyl.1	+	87	11893	c.11773C>T	c.(11773-11775)CAG>TAG	p.Q3925*	RYR2_uc010pya.1_Nonsense_Mutation_p.Q340*	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3925					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGAGTATATTCAGGTAAACAT	0.368													12	24					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237947463	237947463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237947463G>A	uc001hyl.1	+	90	12571	c.12451G>A	c.(12451-12453)GAA>AAA	p.E4151K	RYR2_uc010pya.1_Missense_Mutation_p.E566K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4151					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGTCTATTTTGAAATCAGTGA	0.498													60	96					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237947667	237947667	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237947667G>A	uc001hyl.1	+	90	12775	c.12655G>A	c.(12655-12657)GAA>AAA	p.E4219K	RYR2_uc010pya.1_Missense_Mutation_p.E634K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4219					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGCGAATAAGGAAGAAAGCGA	0.537													13	55					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237947903	237947903	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237947903C>T	uc001hyl.1	+	90	13011	c.12891C>T	c.(12889-12891)TTC>TTT	p.F4297F	RYR2_uc010pya.1_Silent_p.F712F	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4297	Helical; Name=M4; (Potential).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCTTGCACTTCGTGGCCAGCG	0.463													16	39					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237993860	237993860	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:237993860G>A	uc001hyl.1	+	103	14806	c.14686G>A	c.(14686-14688)GAT>AAT	p.D4896N	RYR2_uc010pyb.1_Intron	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4896					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GATAGGCAATGATTACTTCGA	0.423													18	147					0	0	1	0	0
ZP4	57829	broad.mit.edu	37	1	238045810	238045810	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:238045810A>T	uc001hym.2	-	12	1535	c.1535T>A	c.(1534-1536)CTT>CAT	p.L512H	LOC100130331_uc010pyc.1_RNA	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	512	Helical; (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			GGTCCCAGAAAGGCCTGCCAC	0.453													48	116					0	0	1	0	0
ZP4	57829	broad.mit.edu	37	1	238045826	238045826	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:238045826G>A	uc001hym.2	-	12	1519	c.1519C>T	c.(1519-1521)CTG>TTG	p.L507L	LOC100130331_uc010pyc.1_RNA	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	507	Helical; (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			GCCACCCACAGAACTTTCGAG	0.463													34	101					0	0	1	0	0
ZP4	57829	broad.mit.edu	37	1	238049074	238049074	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:238049074C>T	uc001hym.2	-	7	952	c.952G>A	c.(952-954)GAA>AAA	p.E318K	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	318	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			ATCTGAAGTTCCAGAGTGAGG	0.502													8	48					0	0	1	0	0
ZP4	57829	broad.mit.edu	37	1	238053390	238053390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:238053390C>T	uc001hym.2	-	2	262	c.262G>A	c.(262-264)GAG>AAG	p.E88K	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	88	Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			TAGGTTGCCTCCAACACCACG	0.582													38	88					0	0	1	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090203	238090203	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:238090203G>A	uc010pyc.1	+	12		c.1709G>A				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						TGCTGGGGACGATGCCCCCCA	0.602													6	19					0	0	1	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090588	238090588	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:238090588G>A	uc010pyc.1	+	12		c.2094G>A				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						GCATTGTCAGGGACTCTGGAG	0.612													9	30					0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240071103	240071103	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240071103G>A	uc001hyp.2	+	5	1131	c.352G>A	c.(352-354)GGG>AGG	p.G118R		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	118	Helical; Name=2; (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TCTGATTATCGGGGTCATTTC	0.478													20	51					0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240071520	240071520	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240071520G>A	uc001hyp.2	+	5	1548	c.769G>A	c.(769-771)GAA>AAA	p.E257K		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	257	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	GATCTATAAGGAAACTGAAAA	0.483													32	88					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240256102	240256102	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240256102G>A	uc010pyd.1	+	1	918	c.693G>A	c.(691-693)GAG>GAA	p.E231E	FMN2_uc010pye.1_Silent_p.E231E	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	231	Potential.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GCGCCGAGGAGCCTGCAGCGC	0.532													5	14					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240256738	240256738	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240256738C>T	uc010pyd.1	+	1	1554	c.1329C>T	c.(1327-1329)ATC>ATT	p.I443I	FMN2_uc010pye.1_Silent_p.I443I	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	443					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GCCCCAGGATCAAGAGGCGGC	0.682													17	95					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240286576	240286576	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240286576C>T	uc010pyd.1	+	2	1938	c.1713C>T	c.(1711-1713)CTC>CTT	p.L571L	FMN2_uc010pye.1_Silent_p.L571L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	571					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGGGTCTTCTCCTTCCTTTTA	0.507													30	85					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240286601	240286601	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240286601G>A	uc010pyd.1	+	2	1963	c.1738G>A	c.(1738-1740)GAA>AAA	p.E580K	FMN2_uc010pye.1_Missense_Mutation_p.E580K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	580					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TTGCTTCAGGGAACCGTGTAA	0.493													30	77					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240341321	240341321	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240341321C>T	uc010pyd.1	+	3	2108	c.1883C>T	c.(1882-1884)CCA>CTA	p.P628L	FMN2_uc010pye.1_Missense_Mutation_p.P628L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	628					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			ATGGGGCCACCATCCAAACCT	0.493													17	60					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240341341	240341341	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240341341G>A	uc010pyd.1	+	3	2128	c.1903G>A	c.(1903-1905)GAA>AAA	p.E635K	FMN2_uc010pye.1_Missense_Mutation_p.E635K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	635					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TCCCGATGAGGAACACAGGCT	0.473													19	62					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370099	240370099	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240370099G>A	uc010pyd.1	+	5	2212	c.1987G>A	c.(1987-1989)GAA>AAA	p.E663K	FMN2_uc010pye.1_Missense_Mutation_p.E667K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	663					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CGCCCTTCAGGAAGTTGTTGA	0.393													9	38					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370122	240370122	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240370122G>A	uc010pyd.1	+	5	2235	c.2010G>A	c.(2008-2010)GAG>GAA	p.E670E	FMN2_uc010pye.1_Silent_p.E674E	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	670	Potential.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGAAGTCTGAGGGACAGGCCA	0.423													15	51					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370313	240370313	+	Missense_Mutation	SNP	G	A	A	rs140911005		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240370313G>A	uc010pyd.1	+	5	2426	c.2201G>A	c.(2200-2202)CGG>CAG	p.R734Q	FMN2_uc010pye.1_Missense_Mutation_p.R738Q	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	734					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AAGGAAGTACGGCATCATAGG	0.557													10	40					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370490	240370490	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240370490G>A	uc010pyd.1	+	5	2603	c.2378G>A	c.(2377-2379)CGA>CAA	p.R793Q	FMN2_uc010pye.1_Missense_Mutation_p.R797Q	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	793	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TCTCCAAGGCGAATATCAGTC	0.577													20	78					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370507	240370507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240370507G>A	uc010pyd.1	+	5	2620	c.2395G>A	c.(2395-2397)GAC>AAC	p.D799N	FMN2_uc010pye.1_Missense_Mutation_p.D803N	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	799	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AGTCCAGCTCGACAGCCATCA	0.572													22	74					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370636	240370636	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240370636G>A	uc010pyd.1	+	5	2749	c.2524G>A	c.(2524-2526)GAA>AAA	p.E842K	FMN2_uc010pye.1_Missense_Mutation_p.E846K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	842	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AACCAGCCACGAACACTCTGT	0.557													27	90					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370697	240370697	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240370697C>T	uc010pyd.1	+	5	2810	c.2585C>T	c.(2584-2586)CCT>CTT	p.P862L	FMN2_uc010pye.1_Missense_Mutation_p.P866L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	862	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCACCTCTGCCTTGCACAGAG	0.572													29	127					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370850	240370850	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240370850C>T	uc010pyd.1	+	5	2963	c.2738C>T	c.(2737-2739)CCT>CTT	p.P913L	FMN2_uc010pye.1_Missense_Mutation_p.P917L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	913	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCCTCCCCCTCCTCTTCCC	0.662													42	85					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240371007	240371007	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240371007C>T	uc010pyd.1	+	5	3120	c.2895C>T	c.(2893-2895)CCC>CCT	p.P965P	FMN2_uc010pye.1_Silent_p.P969P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	965	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CAGGCATACCCCTTCCTCCCC	0.701													26	80					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240371224	240371224	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240371224G>A	uc010pyd.1	+	5	3337	c.3112G>A	c.(3112-3114)GGA>AGA	p.G1038R	FMN2_uc010pye.1_Missense_Mutation_p.G1042R	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1038	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCACTTCCCGGAGCGGGCAT	0.731													12	47					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240371608	240371608	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240371608C>T	uc010pyd.1	+	5	3721	c.3496C>T	c.(3496-3498)CCC>TCC	p.P1166S	FMN2_uc010pye.1_Missense_Mutation_p.P1170S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1166	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			ACCCCCACCTCCCCCTCTACC	0.692													16	22					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240371658	240371658	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240371658G>A	uc010pyd.1	+	5	3771	c.3546G>A	c.(3544-3546)GTG>GTA	p.V1182V	FMN2_uc010pye.1_Silent_p.V1186V	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1182	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TACCTGGAGTGGGAATACCTC	0.682													5	53					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240371732	240371732	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240371732C>T	uc010pyd.1	+	5	3845	c.3620C>T	c.(3619-3621)CCC>CTC	p.P1207L	FMN2_uc010pye.1_Missense_Mutation_p.P1211L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1207	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GCTGGGATTCCCCCACCTCCT	0.657													18	26					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240371795	240371795	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240371795C>T	uc010pyd.1	+	5	3908	c.3683C>T	c.(3682-3684)CCT>CTT	p.P1228L	FMN2_uc010pye.1_Missense_Mutation_p.P1232L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1228	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CTCCCTCCACCTGGGACAGGA	0.622													15	28					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240374523	240374523	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240374523G>A	uc010pyd.1	+	6	4278	c.4053G>A	c.(4051-4053)ACG>ACA	p.T1351T	FMN2_uc010pye.1_Silent_p.T1355T	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1351	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TCTCAAAGACGAAGGCTAAAC	0.338													40	109					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240493995	240493995	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240493995G>A	uc010pyd.1	+	11	4755	c.4530G>A	c.(4528-4530)CAG>CAA	p.Q1510Q	FMN2_uc010pye.1_Silent_p.Q1514Q|FMN2_uc010pyf.1_Silent_p.Q156Q|FMN2_uc010pyg.1_Silent_p.Q106Q	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1510	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CTCGAGGACAGGCAGATGGCT	0.423													19	101					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240497465	240497465	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240497465G>A	uc010pyd.1	+	13	4926	c.4701G>A	c.(4699-4701)CAG>CAA	p.Q1567Q	FMN2_uc010pye.1_Silent_p.Q1571Q|FMN2_uc010pyf.1_Silent_p.Q213Q|FMN2_uc010pyg.1_Silent_p.Q163Q	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1567	FH2.|Potential.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			ACCTTTTTCAGGCCTCACAGA	0.363													79	202					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240635690	240635690	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240635690G>A	uc010pyd.1	+	17	5304	c.5079G>A	c.(5077-5079)GAG>GAA	p.E1693E	FMN2_uc010pye.1_Silent_p.E1697E|FMN2_uc010pyg.1_Silent_p.E289E|FMN2_uc001hyr.2_RNA	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1693	Potential.|FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AAGCCGAAGAGGTGTGTAGAC	0.333													27	74					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240637445	240637445	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240637445G>A	uc010pyd.1	+	18	5385	c.5160G>A	c.(5158-5160)ATG>ATA	p.M1720I	FMN2_uc010pye.1_Missense_Mutation_p.M1724I|FMN2_uc010pyg.1_Missense_Mutation_p.M316I|FMN2_uc001hyr.2_RNA	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1720					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AGATAAGCATGAAAACTTGAA	0.338													7	32					0	0	1	0	0
RGS7	6000	broad.mit.edu	37	1	240976925	240976925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:240976925C>T	uc001hyv.2	-	13	1279	c.949G>A	c.(949-951)GAG>AAG	p.E317K	RGS7_uc010pyh.1_Missense_Mutation_p.E291K|RGS7_uc010pyj.1_Missense_Mutation_p.E233K|RGS7_uc001hyu.2_Missense_Mutation_p.E317K|RGS7_uc009xgn.1_Missense_Mutation_p.E264K|RGS7_uc001hyw.2_Missense_Mutation_p.E317K|RGS7_uc001hyt.2_Missense_Mutation_p.E149K	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	317					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TACCTTGCCTCAAGTTCCCAG	0.433													15	35					0	0	1	0	0
RGS7	6000	broad.mit.edu	37	1	241262032	241262032	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:241262032C>T	uc001hyv.2	-	3	439	c.109G>A	c.(109-111)GAA>AAA	p.E37K	RGS7_uc010pyh.1_Missense_Mutation_p.E11K|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.E37K|RGS7_uc009xgn.1_Missense_Mutation_p.E37K|RGS7_uc001hyw.2_Missense_Mutation_p.E37K	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	37	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CCATTTTTTTCATCTTGCATC	0.348													22	37					0	0	1	0	0
KMO	8564	broad.mit.edu	37	1	241725561	241725561	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:241725561C>T	uc009xgp.2	+	7	609	c.544C>T	c.(544-546)CGC>TGC	p.R182C	KMO_uc001hyy.2_Missense_Mutation_p.R182C|KMO_uc009xgo.1_Missense_Mutation_p.R182C	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	182					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			GAAGAAACCTCGCTTTGATTA	0.438													30	120					0	0	1	0	0
WDR64	128025	broad.mit.edu	37	1	241953905	241953905	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:241953905G>A	uc001hzf.1	+	14	1686	c.1533G>A	c.(1531-1533)ATG>ATA	p.M511I	WDR64_uc001hzg.1_Missense_Mutation_p.M424I	NM_144625	NP_653226	B1ANS9	WDR64_HUMAN	WD repeat domain 64	958										skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			GGAGAAAAATGAGCTCAGTGT	0.388													18	239					0	0	1	0	0
WDR64	128025	broad.mit.edu	37	1	241964441	241964441	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:241964441G>A	uc001hzf.1	+	17	1982	c.1829G>A	c.(1828-1830)CGA>CAA	p.R610Q	WDR64_uc001hzg.1_Missense_Mutation_p.R523Q	NM_144625	NP_653226	B1ANS9	WDR64_HUMAN	WD repeat domain 64	1057										skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			CAGGCACCACGAAGAAGAAGT	0.373													25	74					0	0	1	0	0
PLD5	200150	broad.mit.edu	37	1	242383335	242383335	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:242383335G>A	uc001hzn.1	-	5	817	c.690C>T	c.(688-690)CAC>CAT	p.H230H	PLD5_uc001hzl.3_Silent_p.H168H|PLD5_uc001hzm.3_Silent_p.H20H|PLD5_uc001hzo.1_Silent_p.H138H			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	230	PLD phosphodiesterase 1.					integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			CGATATACACGTGCTGTTTGT	0.527													16	49					0	0	1	0	0
PLD5	200150	broad.mit.edu	37	1	242383356	242383356	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:242383356G>A	uc001hzn.1	-	5	796	c.669C>T	c.(667-669)TTC>TTT	p.F223F	PLD5_uc001hzl.3_Silent_p.F161F|PLD5_uc001hzm.3_Silent_p.F13F|PLD5_uc001hzo.1_Silent_p.F131F			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	223	PLD phosphodiesterase 1.					integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			CCACGATCCAGAAGGAGGACT	0.522													8	62					0	0	1	0	0
PLD5	200150	broad.mit.edu	37	1	242383365	242383365	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:242383365C>T	uc001hzn.1	-	5	787	c.660G>A	c.(658-660)CAG>CAA	p.Q220Q	PLD5_uc001hzl.3_Silent_p.Q158Q|PLD5_uc001hzm.3_Silent_p.Q10Q|PLD5_uc001hzo.1_Silent_p.Q128Q			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	220	PLD phosphodiesterase 1.					integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			AGAAGGAGGACTGCAGCCGGC	0.547													16	55					0	0	1	0	0
CEP170	9859	broad.mit.edu	37	1	243354563	243354563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:243354563G>A	uc001hzs.2	-	8	1273	c.865C>T	c.(865-867)CCA>TCA	p.P289S	CEP170_uc001hzt.2_Missense_Mutation_p.P289S|CEP170_uc001hzu.2_Missense_Mutation_p.P289S	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	289						centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			ACCTTCCCTGGGGTACTGTCA	0.438													4	20					0	0	1	0	0
CNST	163882	broad.mit.edu	37	1	246811221	246811221	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:246811221C>T	uc001ibp.2	+	9	2096	c.1718C>T	c.(1717-1719)TCC>TTC	p.S573F	CNST_uc001ibo.3_Missense_Mutation_p.S573F	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	573					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						GACGACGACTCCGATCTCCTT	0.408													53	237					0	0	1	0	0
CNST	163882	broad.mit.edu	37	1	246829020	246829020	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:246829020C>T	uc001ibp.2	+	11	2369	c.1991C>T	c.(1990-1992)TCC>TTC	p.S664F		NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	664					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						GGAGGTGGCTCCTGTATTTTG	0.428													28	64					0	0	1	0	0
AHCTF1	25909	broad.mit.edu	37	1	247063417	247063417	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247063417G>A	uc001ibu.1	-	9	1389	c.1382C>T	c.(1381-1383)CCT>CTT	p.P461L	AHCTF1_uc001ibv.1_Missense_Mutation_p.P470L|AHCTF1_uc009xgs.1_5'Flank	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	461	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TGGATATGAAGGAGGGACTCC	0.368													61	187					0	0	1	0	0
ZNF695	57116	broad.mit.edu	37	1	247151348	247151348	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247151348G>A	uc009xgu.2	-	4	614	c.469C>T	c.(469-471)CAA>TAA	p.Q157*	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	157	C2H2-type 1; atypical.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TTATTGCATTGAAAGTTTTTG	0.358													52	226					0	0	1	0	0
VN1R5	317705	broad.mit.edu	37	1	247420072	247420072	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247420072T>A	uc010pyu.1	+	2	699	c.699T>A	c.(697-699)CCT>CCA	p.P233P		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	233	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			TTCATGGTCCTCTCAAGAGGC	0.458													79	148					0	0	1	0	0
ZNF496	84838	broad.mit.edu	37	1	247464567	247464567	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247464567G>A	uc001ico.2	-	9	1483	c.1018C>T	c.(1018-1020)CCG>TCG	p.P340S	ZNF496_uc009xgv.2_Missense_Mutation_p.P376S|ZNF496_uc001icp.2_Missense_Mutation_p.P340S	NM_032752	NP_116141	Q96IT1	ZN496_HUMAN	zinc finger protein 496	340					positive regulation of transcription, DNA-dependent|viral reproduction		DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(71;0.000136)|all_epithelial(71;2.62e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)		OV - Ovarian serous cystadenocarcinoma(106;0.00703)			AGAGATCGCGGGTTGCCGCCA	0.602													15	73					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247582117	247582117	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247582117C>T	uc001icr.2	+	3	159	c.21C>T	c.(19-21)CGC>CGT	p.R7R	NLRP3_uc001ics.2_Silent_p.R7R|NLRP3_uc001icu.2_Silent_p.R7R|NLRP3_uc001icw.2_Silent_p.R7R|NLRP3_uc001icv.2_Silent_p.R7R|NLRP3_uc010pyw.1_Silent_p.R5R|NLRP3_uc001ict.1_Silent_p.R5R	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	7	DAPIN.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CAAGCACCCGCTGCAAGCTGG	0.537													13	44					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247587231	247587231	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247587231G>A	uc001icr.2	+	5	624	c.486G>A	c.(484-486)GTG>GTA	p.V162V	NLRP3_uc001ics.2_Silent_p.V162V|NLRP3_uc001icu.2_Silent_p.V162V|NLRP3_uc001icw.2_Silent_p.V162V|NLRP3_uc001icv.2_Silent_p.V162V|NLRP3_uc010pyw.1_Silent_p.V160V|NLRP3_uc001ict.1_Silent_p.V160V	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	162					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GTGAGAGTGTGAGCCTCAACA	0.532													8	31					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247587807	247587807	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247587807C>T	uc001icr.2	+	5	1200	c.1062C>T	c.(1060-1062)GCC>GCT	p.A354A	NLRP3_uc001ics.2_Silent_p.A354A|NLRP3_uc001icu.2_Silent_p.A354A|NLRP3_uc001icw.2_Silent_p.A354A|NLRP3_uc001icv.2_Silent_p.A354A|NLRP3_uc010pyw.1_Silent_p.A352A|NLRP3_uc001ict.1_Silent_p.A352A	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	354	NACHT.		A -> V (in MWS).		detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GACCTGTGGCCCTGGAGAAAC	0.557													7	93					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247587813	247587813	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247587813G>A	uc001icr.2	+	5	1206	c.1068G>A	c.(1066-1068)GAG>GAA	p.E356E	NLRP3_uc001ics.2_Silent_p.E356E|NLRP3_uc001icu.2_Silent_p.E356E|NLRP3_uc001icw.2_Silent_p.E356E|NLRP3_uc001icv.2_Silent_p.E356E|NLRP3_uc010pyw.1_Silent_p.E354E|NLRP3_uc001ict.1_Silent_p.E354E	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	356	NACHT.		E -> D (in CINCA).		detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TGGCCCTGGAGAAACTGCAGC	0.552													23	76					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247588020	247588020	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247588020G>A	uc001icr.2	+	5	1413	c.1275G>A	c.(1273-1275)CAG>CAA	p.Q425Q	NLRP3_uc001ics.2_Silent_p.Q425Q|NLRP3_uc001icu.2_Silent_p.Q425Q|NLRP3_uc001icw.2_Silent_p.Q425Q|NLRP3_uc001icv.2_Silent_p.Q425Q|NLRP3_uc010pyw.1_Silent_p.Q423Q|NLRP3_uc001ict.1_Silent_p.Q423Q	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	425	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TGAAACAGCAGATGGAGAGTG	0.587													24	59					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247588200	247588200	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247588200G>A	uc001icr.2	+	5	1593	c.1455G>A	c.(1453-1455)GAG>GAA	p.E485E	NLRP3_uc001ics.2_Silent_p.E485E|NLRP3_uc001icu.2_Silent_p.E485E|NLRP3_uc001icw.2_Silent_p.E485E|NLRP3_uc001icv.2_Silent_p.E485E|NLRP3_uc010pyw.1_Silent_p.E483E|NLRP3_uc001ict.1_Silent_p.E483E	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	485	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TCCTGTTTGAGGAGTCCGACC	0.567													14	35					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247588260	247588260	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247588260G>A	uc001icr.2	+	5	1653	c.1515G>A	c.(1513-1515)ATG>ATA	p.M505I	NLRP3_uc001ics.2_Missense_Mutation_p.M505I|NLRP3_uc001icu.2_Missense_Mutation_p.M505I|NLRP3_uc001icw.2_Missense_Mutation_p.M505I|NLRP3_uc001icv.2_Missense_Mutation_p.M505I|NLRP3_uc010pyw.1_Missense_Mutation_p.M503I|NLRP3_uc001ict.1_Missense_Mutation_p.M503I	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	505	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TCCTGAGGATGAACCTGTTCC	0.502													23	40					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247588598	247588598	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247588598C>T	uc001icr.2	+	5	1991	c.1853C>T	c.(1852-1854)GCT>GTT	p.A618V	NLRP3_uc001ics.2_Missense_Mutation_p.A618V|NLRP3_uc001icu.2_Missense_Mutation_p.A618V|NLRP3_uc001icw.2_Missense_Mutation_p.A618V|NLRP3_uc001icv.2_Missense_Mutation_p.A618V|NLRP3_uc010pyw.1_Missense_Mutation_p.A616V|NLRP3_uc001ict.1_Missense_Mutation_p.A616V	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	618					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AAAGCCAAAGCTAAAAAGCTG	0.483													16	51					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247597449	247597450	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247597449_247597450CC>TT	uc001icr.2	+	7	2510_2511	c.2372_2373CC>TT	c.(2371-2373)TCC>TTT	p.S791F	NLRP3_uc001ics.2_Missense_Mutation_p.S791F|NLRP3_uc001icu.2_Missense_Mutation_p.S791F|NLRP3_uc001icw.2_Missense_Mutation_p.S734F|NLRP3_uc001icv.2_Missense_Mutation_p.S734F|NLRP3_uc010pyw.1_Intron	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	791	LRR 2.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TTCGACATCTCCTTGGTCCTCA	0.569													41	99					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247607363	247607363	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247607363G>A	uc001icr.2	+	9	2897	c.2759G>A	c.(2758-2760)CGA>CAA	p.R920Q	NLRP3_uc001ics.2_Missense_Mutation_p.R863Q|NLRP3_uc001icu.2_Missense_Mutation_p.R920Q|NLRP3_uc001icw.2_Missense_Mutation_p.R863Q|NLRP3_uc001icv.2_Missense_Mutation_p.R806Q|NLRP3_uc010pyw.1_Missense_Mutation_p.R898Q	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	920	LRR 7.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CTTTACCTGCGAGGCAACACT	0.493													22	62					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247607993	247607993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247607993C>T	uc001icr.2	+	10	3019	c.2881C>T	c.(2881-2883)CTT>TTT	p.L961F	NLRP3_uc001ics.2_Missense_Mutation_p.L904F|NLRP3_uc001icu.2_Missense_Mutation_p.L961F|NLRP3_uc001icw.2_Missense_Mutation_p.L904F|NLRP3_uc001icv.2_Missense_Mutation_p.L847F|NLRP3_uc010pyw.1_Missense_Mutation_p.L939F	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	961	LRR 8.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CTGCTGGGATCTTTCCACACT	0.527													22	49					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247608109	247608109	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247608109C>T	uc001icr.2	+	10	3135	c.2997C>T	c.(2995-2997)CTC>CTT	p.L999L	NLRP3_uc001ics.2_Silent_p.L942L|NLRP3_uc001icu.2_Silent_p.L999L|NLRP3_uc001icw.2_Silent_p.L942L|NLRP3_uc001icv.2_Silent_p.L885L|NLRP3_uc010pyw.1_Silent_p.L977L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	999					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AGAGCTGCCTCCTGCAGAACC	0.567													5	47					0	0	1	0	0
OR2B11	127623	broad.mit.edu	37	1	247614630	247614630	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247614630G>A	uc010pyx.1	-	1	655	c.655C>T	c.(655-657)CTT>TTT	p.L219F		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TAGGAGAGAAGGATGAGAGCC	0.582													11	64					0	0	1	0	0
OR2B11	127623	broad.mit.edu	37	1	247614655	247614655	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247614655G>A	uc010pyx.1	-	1	630	c.630C>T	c.(628-630)TTC>TTT	p.F210F		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GCACCAACACGAAGAAGGCCA	0.562													23	48					0	0	1	0	0
OR2B11	127623	broad.mit.edu	37	1	247614802	247614802	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247614802G>A	uc010pyx.1	-	1	483	c.483C>T	c.(481-483)TTC>TTT	p.F161F		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			CCACCTGCACGAAGGAGTTGC	0.602													9	40					0	0	1	0	0
OR2W5	441932	broad.mit.edu	37	1	247654918	247654918	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247654918G>A	uc001icz.1	+	1	489	c.489G>A	c.(487-489)ACG>ACA	p.T163T		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	163					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GTCCTCAGACGATGCAGCTCT	0.557													31	61					0	0	1	0	0
OR2C3	81472	broad.mit.edu	37	1	247694899	247694899	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247694899C>T	uc009xgy.2	-	2	1277	c.915G>A	c.(913-915)ATG>ATA	p.M305I	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TCTCTAATACCATGTGCCGGA	0.507													18	48					0	0	1	0	0
OR2C3	81472	broad.mit.edu	37	1	247694907	247694907	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247694907G>A	uc009xgy.2	-	2	1269	c.907C>T	c.(907-909)CGG>TGG	p.R303W	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			ACCATGTGCCGGAGGGCGCTC	0.517													21	52					0	0	1	0	0
C1orf150	148823	broad.mit.edu	37	1	247737544	247737544	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247737544G>A	uc001idf.2	+	5	313	c.268G>A	c.(268-270)GAG>AAG	p.E90K	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	90											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TGATGGCTATGAGAACATTGA	0.458													25	70					0	0	1	0	0
C1orf150	148823	broad.mit.edu	37	1	247737658	247737658	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247737658G>A	uc001idf.2	+	5	427	c.382G>A	c.(382-384)GAT>AAT	p.D128N	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	128											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			CCATGAGCATGATTATGAAGT	0.438													32	72					0	0	1	0	0
OR2G2	81470	broad.mit.edu	37	1	247751770	247751770	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247751770C>T	uc010pyy.1	+	1	109	c.109C>T	c.(109-111)CTG>TTG	p.L37L		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CATATTGATTCTGTATTTACT	0.398													61	149					0	0	1	0	0
OR2G2	81470	broad.mit.edu	37	1	247751996	247751996	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247751996C>T	uc010pyy.1	+	1	335	c.335C>T	c.(334-336)TCC>TTC	p.S112F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GCCCTGGGATCCACTGAGTGC	0.522													50	129					0	0	1	0	0
OR2G2	81470	broad.mit.edu	37	1	247752561	247752561	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247752561G>A	uc010pyy.1	+	1	900	c.900G>A	c.(898-900)GTG>GTA	p.V300V		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TCAAGGAGGTGAAAGGGGCAT	0.363													52	152					0	0	1	0	0
OR2G3	81469	broad.mit.edu	37	1	247768993	247768993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247768993C>T	uc010pyz.1	+	1	106	c.106C>T	c.(106-108)CTC>TTC	p.L36F		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TTTCTTCTACCTCCTGACCCT	0.443													68	176					0	0	1	0	0
OR2G3	81469	broad.mit.edu	37	1	247769160	247769160	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247769160G>A	uc010pyz.1	+	1	273	c.273G>A	c.(271-273)ACG>ACA	p.T91T		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CAAAGAAGACGATCACTTACG	0.463													36	359					0	0	1	0	0
OR2G3	81469	broad.mit.edu	37	1	247769386	247769386	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247769386C>T	uc010pyz.1	+	1	499	c.499C>T	c.(499-501)CCT>TCT	p.P167S		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CTTGCAATTGCCTCTCTGTGG	0.473													37	80					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247835510	247835510	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247835510C>T	uc001idi.1	-	1	834	c.834G>A	c.(832-834)GTG>GTA	p.V278V		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			ATGTGGGAGTCACAAGAGTAT	0.438													11	122					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247836280	247836280	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247836280C>T	uc001idi.1	-	1	64	c.64G>A	c.(64-66)GGA>AGA	p.G22R		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AAGATAATTCCCTGGAGTTCA	0.423													37	72					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247875172	247875172	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247875172C>T	uc001idj.1	-	1	886	c.886G>A	c.(886-888)GAA>AAA	p.E296K		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TCTCTTACTTCCTTATTACGA	0.428													61	148					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247875287	247875287	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247875287G>A	uc001idj.1	-	1	771	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GGACGTGAAGGAAAACTGTGG	0.527													37	103					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247875780	247875780	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247875780G>A	uc001idj.1	-	1	278	c.278C>T	c.(277-279)TCA>TTA	p.S93L		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GCTTGTAAATGATATGGTCTG	0.483													18	86					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247875795	247875795	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247875795C>T	uc001idj.1	-	1	263	c.263G>A	c.(262-264)AGA>AAA	p.R88K		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GGTCTGACTTCTCCCCAGTAG	0.478													33	79					0	0	1	0	0
OR1C1	26188	broad.mit.edu	37	1	247920864	247920864	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247920864G>A	uc010pza.1	-	1	845	c.845C>T	c.(844-846)GCT>GTT	p.A282V		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CAGCATCGGAGCCACCATTGA	0.473													61	113					0	0	1	0	0
OR1C1	26188	broad.mit.edu	37	1	247921186	247921186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247921186G>A	uc010pza.1	-	1	523	c.523C>T	c.(523-525)CAT>TAT	p.H175Y		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			AAGAAATGATGGATGATATTG	0.478													6	17					0	0	1	0	0
OR1C1	26188	broad.mit.edu	37	1	247921586	247921586	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:247921586C>T	uc010pza.1	-	1	123	c.123G>A	c.(121-123)GGG>GGA	p.G41G		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TGAGCATGTTCCCCAAGGTGG	0.483													10	31					0	0	1	0	0
OR11L1	391189	broad.mit.edu	37	1	248004718	248004718	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248004718G>A	uc001idn.1	-	1	481	c.481C>T	c.(481-483)CTG>TTG	p.L161L		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GAAATCATCAGGGAAGGCAGA	0.557													31	90					0	0	1	0	0
OR11L1	391189	broad.mit.edu	37	1	248005088	248005088	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248005088C>T	uc001idn.1	-	1	111	c.111G>A	c.(109-111)CTG>CTA	p.L37L		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.L37Q(1)		ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CTATAATGGTCAGGCAGTAGA	0.493													11	36					0	0	1	0	0
OR11L1	391189	broad.mit.edu	37	1	248005100	248005100	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248005100G>A	uc001idn.1	-	1	99	c.99C>T	c.(97-99)CTC>CTT	p.L33L		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GGCAGTAGATGAGCAGGAAAA	0.498													14	38					0	0	1	0	0
TRIM58	25893	broad.mit.edu	37	1	248031355	248031355	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248031355G>A	uc001ido.2	+	5	909	c.861G>A	c.(859-861)AGG>AGA	p.R287R	OR2W3_uc001idp.1_5'UTR	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	287	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AGCTCTTAAGGAAGTTCCAAG	0.507													3	15					0	0	1	0	0
TRIM58	25893	broad.mit.edu	37	1	248039286	248039286	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248039286G>A	uc001ido.2	+	6	1004	c.956G>A	c.(955-957)TGG>TAG	p.W319*	OR2W3_uc001idp.1_5'UTR	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	319	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GGAGAACCATGGAGGGATGTC	0.582													21	33					0	0	1	0	0
TRIM58	25893	broad.mit.edu	37	1	248039405	248039405	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248039405G>A	uc001ido.2	+	6	1123	c.1075G>A	c.(1075-1077)GGT>AGT	p.G359S	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	359	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AGCAGAGTGGGGTTTAGGGGT	0.562													30	66					0	0	1	0	0
TRIM58	25893	broad.mit.edu	37	1	248039742	248039742	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248039742C>T	uc001ido.2	+	6	1460	c.1412C>T	c.(1411-1413)TCC>TTC	p.S471F	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	471						intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AATTGGGCATCCAGGGATCAT	0.463													19	53					0	0	1	0	0
OR2W3	343171	broad.mit.edu	37	1	248059369	248059369	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248059369C>T	uc001idp.1	+	3	750	c.481C>T	c.(481-483)CCT>TCT	p.P161S	OR2W3_uc010pzb.1_Missense_Mutation_p.P161S	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GGCCATGTCTCCTGTGACCCT	0.647													29	65					0	0	1	0	0
OR2W3	343171	broad.mit.edu	37	1	248059419	248059419	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248059419C>T	uc001idp.1	+	3	800	c.531C>T	c.(529-531)TTC>TTT	p.F177F	OR2W3_uc010pzb.1_Silent_p.F177F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGGACCACTTCCTGCGTGAGA	0.647													18	94					0	0	1	0	0
OR2T8	343172	broad.mit.edu	37	1	248084349	248084349	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248084349C>T	uc010pzc.1	+	1	30	c.30C>T	c.(28-30)TTC>TTT	p.F10F		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCTCTTATTTCATTCTCCTAG	0.413													31	84					0	0	1	0	0
OR2T8	343172	broad.mit.edu	37	1	248084466	248084466	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248084466G>A	uc010pzc.1	+	1	147	c.147G>A	c.(145-147)TGG>TGA	p.W49*		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGATTCACTGGGACCACCGGC	0.527													23	98					0	0	1	0	0
OR2T8	343172	broad.mit.edu	37	1	248085211	248085211	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248085211G>A	uc010pzc.1	+	1	892	c.892G>A	c.(892-894)GCC>ACC	p.A298T		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GGTGAAGGGAGCCCTGACAAG	0.453													51	129					0	0	1	0	0
OR2L8	391190	broad.mit.edu	37	1	248112357	248112357	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248112357C>T	uc001idt.1	+	1	198	c.198C>T	c.(196-198)TCC>TCT	p.S66S	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			GTCAGCTCTCCCTCATTGACC	0.438													129	391					0	0	1	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129042	248129042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248129042C>T	uc010pzd.1	+	1	409	c.409C>T	c.(409-411)CGC>TGC	p.R137C	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			GTCTTATGATCGCTATGTAGC	0.438													111	318					0	0	1	0	0
OR2L1P	26247	broad.mit.edu	37	1	248153922	248153922	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248153922C>T	uc001idv.1	+	1	354	c.110C>T	c.(109-111)GCC>GTC	p.A37V	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						ACATCAATGGCCTATGATCGT	0.458													41	123					0	0	1	0	0
OR2L2	26246	broad.mit.edu	37	1	248202185	248202185	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248202185C>T	uc001idw.2	+	1	712	c.616C>T	c.(616-618)CTT>TTT	p.L206F	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CACCATCTTTCTTGTGCTTCC	0.478													28	255					0	0	1	0	0
OR2L2	26246	broad.mit.edu	37	1	248202490	248202490	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248202490C>T	uc001idw.2	+	1	1017	c.921C>T	c.(919-921)ATC>ATT	p.I307I	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TTCAGAAAATCTTCTCAGTGA	0.423													20	100					0	0	1	0	0
OR2L3	391192	broad.mit.edu	37	1	248224134	248224134	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248224134G>A	uc001idx.1	+	1	151	c.151G>A	c.(151-153)GAC>AAC	p.D51N	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CATCTTCTTGGACACCCATCT	0.413													159	416					0	0	1	0	0
OR2L3	391192	broad.mit.edu	37	1	248224609	248224609	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248224609C>T	uc001idx.1	+	1	626	c.626C>T	c.(625-627)CCC>CTC	p.P209L	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CTCGTGTTTCCCTTCATTGCT	0.507													43	165					0	0	1	0	0
OR2L13	284521	broad.mit.edu	37	1	248263316	248263316	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248263316C>T	uc001ids.2	+	3	976	c.639C>T	c.(637-639)ATC>ATT	p.I213I		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			TCATTGGCATCACTTCTTCCT	0.428													26	82					0	0	1	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285506	248285506	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248285506C>T	uc001idy.1	+	1	69	c.69C>T	c.(67-69)TCC>TCT	p.S23S		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						GCAGCAAGTCCATTTCTATGG	0.488													95	298					0	0	1	0	0
OR2M5	127059	broad.mit.edu	37	1	248308496	248308496	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248308496G>A	uc010pze.1	+	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			ATCCTCCTGGGAATCTTCAAT	0.443													111	265					0	0	1	0	0
OR2M5	127059	broad.mit.edu	37	1	248309077	248309077	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248309077C>T	uc010pze.1	+	1	628	c.628C>T	c.(628-630)CCT>TCT	p.P210S		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GATTGTTTTTCCTGTTGCAAT	0.418													72	344					0	0	1	0	0
OR2M2	391194	broad.mit.edu	37	1	248343311	248343311	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248343311C>T	uc010pzf.1	+	1	24	c.24C>T	c.(22-24)TTC>TTT	p.F8F		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATCAGACCTTCAACTCCGACT	0.423													51	254					0	0	1	0	0
OR2M3	127062	broad.mit.edu	37	1	248366642	248366642	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248366642C>T	uc010pzg.1	+	1	273	c.273C>T	c.(271-273)TCC>TCT	p.S91S		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GCAGCAAGTCCATTTCTATGG	0.498													156	394					0	0	1	0	0
OR2M4	26245	broad.mit.edu	37	1	248402395	248402395	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248402395C>T	uc010pzh.1	+	1	165	c.165C>T	c.(163-165)CTC>CTT	p.L55L		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGAAACAGCTCCACACCCCCA	0.483													77	184					0	0	1	0	0
OR2M4	26245	broad.mit.edu	37	1	248402533	248402533	+	Silent	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248402533A>C	uc010pzh.1	+	1	303	c.303A>C	c.(301-303)ATA>ATC	p.I101I		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GAACTCAGATATTCTTCTATG	0.463													39	84					0	0	1	0	0
OR2M4	26245	broad.mit.edu	37	1	248402960	248402960	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248402960C>T	uc010pzh.1	+	1	730	c.730C>T	c.(730-732)CAC>TAC	p.H244Y		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTGCTCCTCCCACCTGTCTGT	0.517													16	64					0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248436215	248436215	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248436215C>T	uc010pzi.1	-	1	902	c.902G>A	c.(901-903)CGG>CAG	p.R301Q		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CCCCAGCCACCGTTTCAGGGC	0.438													100	207					0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248436263	248436263	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248436263G>A	uc010pzi.1	-	1	854	c.854C>T	c.(853-855)CCC>CTC	p.P285L		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GTAGATGAGGGGGTTTAGTAA	0.478													47	232					0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248436697	248436697	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248436697C>T	uc010pzi.1	-	1	420	c.420G>A	c.(418-420)CTG>CTA	p.L140L		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGGTCATCCTCAGGCACAGCT	0.582													32	167					0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248436749	248436749	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248436749G>A	uc010pzi.1	-	1	368	c.368C>T	c.(367-369)GCT>GTT	p.A123V		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GTGGCAGACAGCCGCATAGCG	0.607													21	111					0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248437012	248437012	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248437012G>A	uc010pzi.1	-	1	105	c.105C>T	c.(103-105)ACC>ACT	p.T35T		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CAAACAGGGAGGTCAAAACGA	0.488													32	77					0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248437015	248437015	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248437015C>T	uc010pzi.1	-	1	102	c.102G>A	c.(100-102)TTG>TTA	p.L34L		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ACAGGGAGGTCAAAACGATAC	0.493													24	90					0	0	1	0	0
OR2T12	127064	broad.mit.edu	37	1	248458484	248458484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248458484G>A	uc010pzj.1	-	1	397	c.397C>T	c.(397-399)CTC>TTC	p.L133F		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			CAGCTCATGAGAGTGGGATAT	0.602													15	49					0	0	1	0	0
OR2T12	127064	broad.mit.edu	37	1	248458788	248458788	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248458788G>A	uc010pzj.1	-	1	93	c.93C>T	c.(91-93)GCC>GCT	p.A31A		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			TCAAAACGGTGGCCAGAAGCA	0.493													19	176					0	0	1	0	0
OR2M7	391196	broad.mit.edu	37	1	248486954	248486954	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248486954C>T	uc010pzk.1	-	1	917	c.917G>A	c.(916-918)GGA>GAA	p.G306E		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTTGCCCTTTCCTAAGATTTT	0.388													13	61					0	0	1	0	0
OR2M7	391196	broad.mit.edu	37	1	248486965	248486965	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248486965C>T	uc010pzk.1	-	1	906	c.906G>A	c.(904-906)ATG>ATA	p.M302I		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTAAGATTTTCATTAATGCTC	0.403													25	60					0	0	1	0	0
OR2M7	391196	broad.mit.edu	37	1	248487739	248487739	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248487739G>A	uc010pzk.1	-	1	132	c.132C>T	c.(130-132)ATC>ATT	p.I44I		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGAGAACCATGATGGAGTTTC	0.532													113	324					0	0	1	0	0
OR2M7	391196	broad.mit.edu	37	1	248487829	248487829	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248487829G>A	uc010pzk.1	-	1	42	c.42C>T	c.(40-42)CTC>CTT	p.L14L		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGATTCCCAGGAGGAGGAAGT	0.453													24	303					0	0	1	0	0
OR2T6	254879	broad.mit.edu	37	1	248551092	248551092	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248551092C>T	uc001iei.1	+	1	183	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCATGTACTTCCTCCTCAGCC	0.488													17	87					0	0	1	0	0
OR2T6	254879	broad.mit.edu	37	1	248551788	248551788	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248551788G>A	uc001iei.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACAGTCTGAGGAACAGGGATG	0.458													13	59					0	0	1	0	0
OR2T1	26696	broad.mit.edu	37	1	248570362	248570362	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248570362G>A	uc010pzm.1	+	1	1067	c.1067G>A	c.(1066-1068)GGG>GAG	p.G356E		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	356	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGGGCCTTGGGGAGGTTCAAG	0.522													40	134					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616152	248616152	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248616152C>T	uc001iek.1	+	1	54	c.54C>T	c.(52-54)CTC>CTT	p.L18L		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCACAGGCCTCATCACCCATC	0.517													38	173					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616180	248616180	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248616180C>T	uc001iek.1	+	1	82	c.82C>T	c.(82-84)CTC>TTC	p.L28F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCCCGGGCTTCTCTTTGCAAT	0.527													36	275					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616431	248616431	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248616431G>A	uc001iek.1	+	1	333	c.333G>A	c.(331-333)GGG>GGA	p.G111G		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGATTGGAGGGGAATTCTTCC	0.542													45	244					0	0	1	0	0
OR2T3	343173	broad.mit.edu	37	1	248636944	248636944	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248636944C>T	uc001iel.1	+	1	293	c.293C>T	c.(292-294)TCC>TTC	p.S98F		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GATACCATTTCCCCGTCAGGC	0.542													15	41					0	0	1	0	0
OR2T3	343173	broad.mit.edu	37	1	248637427	248637427	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248637427C>T	uc001iel.1	+	1	776	c.776C>T	c.(775-777)GCT>GTT	p.A259V		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	259	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTCTTCGGTGCTTCCTTCTAC	0.552													102	353					0	0	1	0	0
OR2T3	343173	broad.mit.edu	37	1	248637430	248637430	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248637430C>T	uc001iel.1	+	1	779	c.779C>T	c.(778-780)TCC>TTC	p.S260F		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	260	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTCGGTGCTTCCTTCTACACC	0.557													103	363					0	0	1	0	0
OR2T3	343173	broad.mit.edu	37	1	248637506	248637506	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248637506C>T	uc001iel.1	+	1	855	c.855C>T	c.(853-855)ATC>ATT	p.I285I		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTTACACCATCTTCACTCCTG	0.502													69	322					0	0	1	0	0
OR2T5	401993	broad.mit.edu	37	1	248651978	248651978	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248651978T>C	uc001iem.1	+	1	89	c.89T>C	c.(88-90)CTA>CCA	p.L30P		NM_001004697	NP_001004697	Q6IEZ7	OR2T5_HUMAN	olfactory receptor, family 2, subfamily T,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CATCCAGCTCTACTTAGTGTG	0.502													10	183					0	0	1	0	0
OR2G6	391211	broad.mit.edu	37	1	248684977	248684977	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248684977G>A	uc001ien.1	+	1	30	c.30G>A	c.(28-30)AAG>AAA	p.K10K		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCTCTGAAAAGGGATTTCTTC	0.413													34	162					0	0	1	0	0
OR2G6	391211	broad.mit.edu	37	1	248685415	248685415	+	Silent	SNP	C	T	T	rs146219175	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248685415C>T	uc001ien.1	+	1	468	c.468C>T	c.(466-468)TCC>TCT	p.S156S		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCATCACCTCCCTAATTCAGT	0.577													11	38					0	0	1	0	0
OR2G6	391211	broad.mit.edu	37	1	248685705	248685705	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248685705G>A	uc001ien.1	+	1	758	c.758G>A	c.(757-759)GGG>GAG	p.G253E		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATTTTCTATGGGACCATCATA	0.438													14	96					0	0	1	0	0
OR2G6	391211	broad.mit.edu	37	1	248685759	248685759	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248685759G>A	uc001ien.1	+	1	812	c.812G>A	c.(811-813)GGA>GAA	p.G271E		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AAAAACCAGGGAAAGTTTGTT	0.438													28	89					0	0	1	0	0
OR2T34	127068	broad.mit.edu	37	1	248737532	248737532	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248737532G>A	uc001iep.1	-	1	527	c.527C>T	c.(526-528)TCT>TTT	p.S176F		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GATTTTCCTAGACTGGCAAAA	0.527													43	82					0	0	1	0	0
OR2T10	127069	broad.mit.edu	37	1	248756558	248756558	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248756558G>A	uc010pzn.1	-	1	512	c.512C>T	c.(511-513)TCC>TTC	p.S171F		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AATCTCATGGGATCTGCAGAA	0.507													28	117					0	0	1	0	0
OR2T10	127069	broad.mit.edu	37	1	248756928	248756928	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248756928G>A	uc010pzn.1	-	1	142	c.142C>T	c.(142-144)CTG>TTG	p.L48L		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATGTGGATCAGAAGTATCAAT	0.418													29	80					0	0	1	0	0
OR2T11	127077	broad.mit.edu	37	1	248789634	248789634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248789634C>T	uc001ier.1	-	1	796	c.796G>A	c.(796-798)GAG>AAG	p.E266K		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTGTCCTGCTCGGGGGTGTGG	0.502													22	74					0	0	1	0	0
OR2T11	127077	broad.mit.edu	37	1	248790279	248790279	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248790279G>A	uc001ier.1	-	1	151	c.151C>T	c.(151-153)CGC>TGC	p.R51C		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTGTGGAGGCGAGAGTCCACC	0.498													25	78					0	0	1	0	0
OR2T27	403239	broad.mit.edu	37	1	248813251	248813251	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248813251C>T	uc010pzo.1	-	1	935	c.935G>A	c.(934-936)GGA>GAA	p.G312E		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGTTACCTTTCCTGAGGACAC	0.428													23	60					0	0	1	0	0
OR2T27	403239	broad.mit.edu	37	1	248813326	248813326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248813326G>A	uc010pzo.1	-	1	860	c.860C>T	c.(859-861)CCA>CTA	p.P287L		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTAAATGAGTGGATTGAGCAT	0.493													20	69					0	0	1	0	0
OR14I1	401994	broad.mit.edu	37	1	248845324	248845324	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:248845324G>A	uc001ieu.1	-	1	282	c.282C>T	c.(280-282)GGC>GGT	p.G94G		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	94	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GAGCCACACAGCCAAGATAAG	0.488													8	40					0	0	1	0	0
SH3BP5L	80851	broad.mit.edu	37	1	249106434	249106434	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:249106434G>A	uc001iew.1	-	7	1399	c.847C>T	c.(847-849)CCC>TCC	p.P283S	SH3BP5L_uc010pzp.1_Missense_Mutation_p.P176S|SH3BP5L_uc010pzq.1_Missense_Mutation_p.P251S|SH3BP5L_uc001iev.1_Missense_Mutation_p.P164S	NM_030645	NP_085148	Q7L8J4	3BP5L_HUMAN	SH3-binding domain protein 5-like	283											0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			GGGCCCAGGGGGTGGGGAGGC	0.716													6	21					0	0	1	0	0
TUBB8	347688	broad.mit.edu	37	10	94797	94797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:94797C>T	uc001ifi.2	-	2	113	c.113G>A	c.(112-114)GGG>GAG	p.G38E	TUBB8_uc009xhe.2_Missense_Mutation_p.G38E|TUBB8_uc010pzs.1_5'UTR	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	38					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		GTGGCTGTCCCCGTGGTAGGT	0.647													5	8					0	0	1	0	0
DIP2C	22982	broad.mit.edu	37	10	394645	394645	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:394645G>A	uc001ifp.2	-	26	3257	c.3167C>T	c.(3166-3168)ACC>ATC	p.T1056I	DIP2C_uc009xhi.1_Missense_Mutation_p.T442I	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	1056						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		GGGACGGACGGTTATTGGCAC	0.547													59	163					0	0	1	0	0
DIP2C	22982	broad.mit.edu	37	10	408507	408507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:408507G>A	uc001ifp.2	-	22	2807	c.2717C>T	c.(2716-2718)TCT>TTT	p.S906F	DIP2C_uc009xhi.1_Missense_Mutation_p.S292F|DIP2C_uc010pzz.1_Missense_Mutation_p.S227F	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	906						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		GGGGTGCAGAGAGCCCTCCAG	0.542													16	88					0	0	1	0	0
DIP2C	22982	broad.mit.edu	37	10	409209	409209	+	Silent	SNP	G	A	A	rs140563600		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:409209G>A	uc001ifp.2	-	21	2610	c.2520C>T	c.(2518-2520)ATC>ATT	p.I840I	DIP2C_uc009xhi.1_Silent_p.I226I|DIP2C_uc010pzz.1_Silent_p.I161I	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	840						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CCACGATCACGATCCTCTCGT	0.647													18	42					0	0	1	0	0
DIP2C	22982	broad.mit.edu	37	10	410451	410451	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:410451G>A	uc001ifp.2	-	20	2430	c.2340C>T	c.(2338-2340)TTC>TTT	p.F780F	DIP2C_uc009xhi.1_Silent_p.F166F|DIP2C_uc010pzz.1_Silent_p.F101F	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	780						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CGGGACCCACGAACCCCAGCA	0.617													19	65					0	0	1	0	0
LARP4B	23185	broad.mit.edu	37	10	861007	861007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:861007G>A	uc001ifs.1	-	15	1740	c.1699C>T	c.(1699-1701)CTC>TTC	p.L567F		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	567							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						TCTGCACTGAGGGTCTGAAAC	0.592													17	39					0	0	1	0	0
LARP4B	23185	broad.mit.edu	37	10	871741	871741	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:871741G>A	uc001ifs.1	-	11	1236	c.1195C>T	c.(1195-1197)CCT>TCT	p.P399S		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	399							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						GAAGTCAGAGGAGACGCCGCA	0.468													7	36					0	0	1	0	0
GTPBP4	23560	broad.mit.edu	37	10	1038576	1038576	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:1038576C>T	uc001ift.2	+	2	267	c.196C>T	c.(196-198)CTA>TTA	p.L66L	GTPBP4_uc010qac.1_5'UTR|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_5'UTR|GTPBP4_uc010qae.1_Silent_p.L19L	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	66					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		TTCACAAATTCTAACAGATTT	0.343													11	29					0	0	1	0	0
GTPBP4	23560	broad.mit.edu	37	10	1046704	1046704	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:1046704C>T	uc001ift.2	+	7	813	c.742C>T	c.(742-744)CGT>TGT	p.R248C	GTPBP4_uc010qac.1_Missense_Mutation_p.R39C|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Missense_Mutation_p.R132C|GTPBP4_uc010qae.1_Missense_Mutation_p.R201C	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	248					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		GGCCCACCTCCGTGCTGCGGT	0.557													38	71					0	0	1	0	0
WDR37	22884	broad.mit.edu	37	10	1149546	1149546	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:1149546C>T	uc001igf.1	+	10	904	c.731C>T	c.(730-732)TCT>TTT	p.S244F	WDR37_uc009xhm.1_Missense_Mutation_p.S245F|WDR37_uc009xhn.1_RNA|WDR37_uc001igg.1_RNA	NM_014023	NP_054742	Q9Y2I8	WDR37_HUMAN	WD repeat domain 37	244											0		all_epithelial(10;0.0449)|Colorectal(49;0.142)		Epithelial(11;0.134)		CAGCAGATATCTGGGGAAGAT	0.498													13	38					0	0	1	0	0
ADARB2	105	broad.mit.edu	37	10	1230951	1230951	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:1230951C>T	uc009xhq.2	-	9	2267	c.1893G>A	c.(1891-1893)CCG>CCA	p.P631P	ADARB2_uc009xhp.2_Silent_p.P15P|ADARB2_uc001igl.3_5'UTR|ADARB2_uc001igm.3_Silent_p.P140P	NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	631	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		GCGACTTCCCCGGCTGGCGCG	0.682													6	39					0	0	1	0	0
ADARB2	105	broad.mit.edu	37	10	1421334	1421334	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:1421334G>A	uc009xhq.2	-	2	496	c.122C>T	c.(121-123)ACC>ATC	p.T41I		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	41					mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		AGCGAGGAAGGTTGACAATAT	0.433													20	49					0	0	1	0	0
AKR1E2	83592	broad.mit.edu	37	10	4879714	4879714	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:4879714G>A	uc001ihi.2	+	5	638	c.523G>A	c.(523-525)GAA>AAA	p.E175K	AKR1E2_uc001ihl.1_RNA|AKR1E2_uc010qam.1_Missense_Mutation_p.E136K|AKR1E2_uc001ihh.1_Missense_Mutation_p.E175K|AKR1E2_uc009xhw.2_Intron|AKR1E2_uc001ihj.2_RNA|AKR1E2_uc001ihk.2_Missense_Mutation_p.E175K	NM_001040177	NP_001035267	Q96JD6	AKCL2_HUMAN	aldo-keto reductase family 1, member E2	175						cytoplasm	1,5-anhydro-D-fructose reductase activity				0						CTTCAACCATGAACAGCTTGA	0.507													19	46					0	0	1	0	0
AKR1E2	83592	broad.mit.edu	37	10	4883992	4883992	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:4883992G>A	uc001ihi.2	+	7	811	c.696G>A	c.(694-696)CTG>CTA	p.L232L	AKR1E2_uc001ihl.1_Intron|AKR1E2_uc010qam.1_Intron|AKR1E2_uc001ihh.1_Intron|AKR1E2_uc009xhw.2_Intron|AKR1E2_uc001ihj.2_RNA|AKR1E2_uc001ihk.2_Intron	NM_001040177	NP_001035267	Q96JD6	AKCL2_HUMAN	aldo-keto reductase family 1, member E2	232						cytoplasm	1,5-anhydro-D-fructose reductase activity				0						GGGTTGACCTGATAGACAACC	0.517													9	23					0	0	1	0	0
AKR1C1	1645	broad.mit.edu	37	10	5011070	5011070	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5011070C>T	uc001iho.2	+	10	1345	c.504C>T	c.(502-504)TTC>TTT	p.F168F	AKR1E2_uc001ihl.1_Intron|AKR1C2_uc010qan.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C1_uc001ihq.2_Silent_p.F168F	NM_001353	NP_001344	Q04828	AK1C1_HUMAN	aldo-keto reductase family 1, member C1	168					bile acid and bile salt transport|bile acid metabolic process|cholesterol homeostasis|intestinal cholesterol absorption|protein homooligomerization|response to organophosphorus|xenobiotic metabolic process	cytosol	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid binding|indanol dehydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			ovary(2)	2					NADH(DB00157)	TGTCCAACTTCAACCGCAGGC	0.517													42	80					0	0	1	0	0
AKR1C1	1645	broad.mit.edu	37	10	5014844	5014844	+	Missense_Mutation	SNP	G	A	A	rs140396306		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5014844G>A	uc001iho.2	+	12	1590	c.749G>A	c.(748-750)CGA>CAA	p.R250Q	AKR1E2_uc001ihl.1_Intron|AKR1C2_uc010qan.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C1_uc001ihq.2_Missense_Mutation_p.R250Q	NM_001353	NP_001344	Q04828	AK1C1_HUMAN	aldo-keto reductase family 1, member C1	250	NADP (By similarity).				bile acid and bile salt transport|bile acid metabolic process|cholesterol homeostasis|intestinal cholesterol absorption|protein homooligomerization|response to organophosphorus|xenobiotic metabolic process	cytosol	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid binding|indanol dehydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			ovary(2)	2					NADH(DB00157)	AAGCACAAGCGAACCCCAGCC	0.597													31	127					0	0	1	0	0
AKR1C3	8644	broad.mit.edu	37	10	5141002	5141002	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5141002G>A	uc001ihr.2	+	4	561	c.378G>A	c.(376-378)GAG>GAA	p.E126E	AKR1C3_uc010qap.1_Silent_p.E103E|AKR1C3_uc001ihu.2_Silent_p.E126E	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	126					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	AGCCAGGTGAGGAACTTTCAC	0.428													15	44					0	0	1	0	0
AKR1C3	8644	broad.mit.edu	37	10	5147850	5147850	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5147850C>T	uc001ihr.2	+	8	1093	c.910C>T	c.(910-912)CAC>TAC	p.H304Y	AKR1C3_uc010qap.1_Missense_Mutation_p.H281Y|AKR1C3_uc001ihu.2_Missense_Mutation_p.H304Y	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	304					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	CAGAAATCTCCACTATTTTAA	0.358													13	35					0	0	1	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5203690	5203690	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5203690C>T	uc009xhz.2	-	4		c.502G>A				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						TTTTGGCAATCCTATGCACCT	0.418													29	104					0	0	1	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5203915	5203915	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5203915C>T	uc009xhz.2	-	3		c.365G>A				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						CCAATTCTGCCCGAAAGAAAG	0.393													10	26					0	0	1	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5204841	5204841	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5204841C>T	uc009xhz.2	-	2		c.319G>A				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						TATTTCCTCTCTCTTGACGGT	0.423													50	175					0	0	1	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5227059	5227059	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5227059C>T	uc009xhz.2	-	1		c.92G>A				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						GCTTCAGATCCGTCATCATCC	0.507													20	43					0	0	1	0	0
AKR1C4	1109	broad.mit.edu	37	10	5258737	5258737	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5258737C>T	uc001ihw.2	+	8	943	c.910C>T	c.(910-912)CGA>TGA	p.R304*		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	304					androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	CAGAAATTATCGATATGTTGT	0.343													6	15					0	0	1	0	0
TUBAL3	79861	broad.mit.edu	37	10	5435776	5435776	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5435776G>A	uc001ihy.2	-	4	1085	c.1045C>T	c.(1045-1047)CAG>TAG	p.Q349*	TUBAL3_uc001ihz.2_Nonsense_Mutation_p.Q309*	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	349					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						TCTACAAACTGAACAGAGTGC	0.567													23	40					0	0	1	0	0
TUBAL3	79861	broad.mit.edu	37	10	5435978	5435978	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5435978G>A	uc001ihy.2	-	4	883	c.843C>T	c.(841-843)CCC>CCT	p.P281P	TUBAL3_uc001ihz.2_Silent_p.P241P	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	281					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						CAGAGACGATGGGGGCGAAGG	0.517													39	107					0	0	1	0	0
CALML3	810	broad.mit.edu	37	10	5567368	5567368	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:5567368G>A	uc001iie.1	+	1	445	c.320G>A	c.(319-321)CGA>CAA	p.R107Q	uc001iid.1_5'Flank	NM_005185	NP_005176	P27482	CALL3_HUMAN	calmodulin-like 3	107	EF-hand 3.						calcium ion binding				0						GCCGAGCTGCGACACGTCATG	0.647													17	31					0	0	1	0	0
IL15RA	3601	broad.mit.edu	37	10	6002493	6002493	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6002493C>T	uc001iiv.2	-	4	502	c.420G>A	c.(418-420)GCG>GCA	p.A140A	IL15RA_uc001iiu.2_5'UTR|IL15RA_uc010qau.1_Silent_p.A107A|IL15RA_uc001iiw.2_Silent_p.A104A|IL15RA_uc001iix.2_Silent_p.A71A|IL15RA_uc001iiy.2_5'UTR	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	140	Extracellular (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						CTGTTGTGGCCGCTGTGTTGT	0.567													19	38					0	0	1	0	0
IL15RA	3601	broad.mit.edu	37	10	6008124	6008124	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6008124G>A	uc001iiv.2	-	2	349	c.267C>T	c.(265-267)CCC>CCT	p.P89P	IL15RA_uc010qau.1_Silent_p.P89P|IL15RA_uc001iiw.2_Silent_p.P53P|IL15RA_uc001iix.2_Silent_p.P53P|IL15RA_uc001iiy.2_Intron	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	89	Sushi.|Extracellular (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						ATTTGAGACTGGGGGTTGTCC	0.572													8	36					0	0	1	0	0
IL15RA	3601	broad.mit.edu	37	10	6008179	6008179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6008179C>T	uc001iiv.2	-	2	294	c.212G>A	c.(211-213)AGC>AAC	p.S71N	IL15RA_uc010qau.1_Missense_Mutation_p.S71N|IL15RA_uc001iiw.2_Missense_Mutation_p.S35N|IL15RA_uc001iix.2_Missense_Mutation_p.S35N|IL15RA_uc001iiy.2_Intron	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	71	Sushi.|Extracellular (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						CTCCGTCAGGCTGGACGTGCC	0.552													17	35					0	0	1	0	0
IL2RA	3559	broad.mit.edu	37	10	6061852	6061852	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6061852G>A	uc001iiz.1	-	5	795	c.636C>T	c.(634-636)TCC>TCT	p.S212S	IL2RA_uc009xih.1_Silent_p.S140S|IL2RA_uc001ija.1_Intron	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	212	Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	TGACGAGGCAGGAAGTCTCAC	0.577													35	86					0	0	1	0	0
IL2RA	3559	broad.mit.edu	37	10	6063514	6063514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6063514C>T	uc001iiz.1	-	4	669	c.510G>A	c.(508-510)ATG>ATA	p.M170I	IL2RA_uc009xih.1_Intron|IL2RA_uc001ija.1_Intron	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	170	Sushi 2.|Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	TCCCGTGGGTCATTTTGCAGA	0.537													54	144					0	0	1	0	0
PFKFB3	5209	broad.mit.edu	37	10	6261655	6261655	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6261655A>G	uc001ije.2	+	7	1006	c.622A>G	c.(622-624)AGG>GGG	p.R208G	PFKFB3_uc001ijd.2_Missense_Mutation_p.R188G|PFKFB3_uc009xii.2_RNA|PFKFB3_uc010qaw.1_Missense_Mutation_p.R222G|PFKFB3_uc001ijf.2_Missense_Mutation_p.R208G	NM_004566	NP_004557	Q16875	F263_HUMAN	6-phosphofructo-2-kinase/fructose-2,	208	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(2)|central_nervous_system(1)	3						CAAATGCGACAGGTGATTCCC	0.502													16	66					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6472810	6472810	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6472810C>T	uc001ijj.1	-	17	2002	c.1927G>A	c.(1927-1929)GAA>AAA	p.E643K	PRKCQ_uc009xim.1_Missense_Mutation_p.E580K|PRKCQ_uc001iji.1_Missense_Mutation_p.E676K|PRKCQ_uc009xin.1_Missense_Mutation_p.E607K|PRKCQ_uc010qax.1_Missense_Mutation_p.E518K	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	643	AGC-kinase C-terminal.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						TCCTTCCGTTCAAGTTCCTCC	0.602													23	68					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6483972	6483972	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6483972C>T	uc001ijj.1	-	16	1794	c.1719G>A	c.(1717-1719)CTG>CTA	p.L573L	PRKCQ_uc009xim.1_Intron|PRKCQ_uc001iji.1_Silent_p.L606L|PRKCQ_uc009xin.1_Silent_p.L537L|PRKCQ_uc010qax.1_Silent_p.L448L	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	573	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						ACTGACCAATCAGCATTTCAT	0.517													29	67					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6484041	6484041	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6484041G>A	uc001ijj.1	-	16	1725	c.1650C>T	c.(1648-1650)ATC>ATT	p.I550I	PRKCQ_uc009xim.1_Intron|PRKCQ_uc001iji.1_Silent_p.I583I|PRKCQ_uc009xin.1_Silent_p.I514I|PRKCQ_uc010qax.1_Silent_p.I425I	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	550	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						GACCCAGCAAGATCTGCACAA	0.507													11	45					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6527210	6527210	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6527210C>T	uc001ijj.1	-	10	997	c.922G>A	c.(922-924)GAA>AAA	p.E308K	PRKCQ_uc009xim.1_Missense_Mutation_p.E308K|PRKCQ_uc001iji.1_Missense_Mutation_p.E341K|PRKCQ_uc009xin.1_Missense_Mutation_p.E272K|PRKCQ_uc010qax.1_Missense_Mutation_p.E183K	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	308					axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						AAGATCTGTTCAGTATCTCTT	0.507													36	145					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6553068	6553068	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:6553068G>A	uc001ijj.1	-	3	282	c.207C>T	c.(205-207)GTC>GTT	p.V69V	PRKCQ_uc009xim.1_Silent_p.V69V|PRKCQ_uc001iji.1_Silent_p.V102V|PRKCQ_uc009xin.1_Silent_p.V33V|PRKCQ_uc010qax.1_5'UTR	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	69	C2.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						TGATCTGCATGACTCTTCCCT	0.493													52	110					0	0	1	0	0
SFMBT2	57713	broad.mit.edu	37	10	7262416	7262416	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7262416G>A	uc009xio.1	-	11	1378	c.1287C>T	c.(1285-1287)TCC>TCT	p.S429S	SFMBT2_uc001ijn.1_Silent_p.S429S|SFMBT2_uc010qay.1_Intron	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	429	MBT 4.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						CACTCACAACGGAGGCCACAC	0.517													101	216					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7611736	7611736	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7611736G>A	uc001ijq.2	-	12	2123	c.2044C>T	c.(2044-2046)CCC>TCC	p.P682S	ITIH5_uc001ijp.2_Missense_Mutation_p.P468S	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	682					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						ACAAAGTGGGGATCACCATCC	0.393													6	25					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7618552	7618552	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7618552G>A	uc001ijq.2	-	10	1921	c.1842C>T	c.(1840-1842)TTC>TTT	p.F614F	ITIH5_uc001ijp.2_Silent_p.F400F|ITIH5_uc001ijr.1_Silent_p.F614F	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	614					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						AGGGAGTGAGGAAGCGGTAGC	0.667													20	53					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7621800	7621800	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7621800G>A	uc001ijq.2	-	9	1415	c.1336C>T	c.(1336-1338)CTG>TTG	p.L446L	ITIH5_uc001ijp.2_Silent_p.L232L|ITIH5_uc001ijr.1_Silent_p.L446L	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	446	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						TTCTCCAGCAGCCTGAAGTCC	0.617													21	58					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7621837	7621837	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7621837G>A	uc001ijq.2	-	9	1378	c.1299C>T	c.(1297-1299)ATC>ATT	p.I433I	ITIH5_uc001ijp.2_Silent_p.I219I|ITIH5_uc001ijr.1_Silent_p.I433I	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	433	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CAATGGTGAAGATGCAGACTT	0.617													27	67					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7621969	7621969	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7621969G>A	uc001ijq.2	-	9	1246	c.1167C>T	c.(1165-1167)GCC>GCT	p.A389A	ITIH5_uc001ijp.2_Silent_p.A175A|ITIH5_uc001ijr.1_Silent_p.A389A	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	389	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						TGCCACTGTGGGCCACGTACT	0.602													8	30					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7679435	7679435	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7679435C>T	uc001ijq.2	-	5	487	c.408G>A	c.(406-408)AAG>AAA	p.K136K	ITIH5_uc001ijr.1_Silent_p.K136K	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	136	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						TTTCAGTCCCCTTCTCTCTGT	0.542													7	78					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7683931	7683931	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7683931C>T	uc001ijq.2	-	3	337	c.258G>A	c.(256-258)CAG>CAA	p.Q86Q	ITIH5_uc001ijr.1_Silent_p.Q86Q	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	86	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						GAATCTGCATCTGGAACTCAA	0.483													45	84					0	0	1	0	0
ITIH2	3698	broad.mit.edu	37	10	7759687	7759687	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7759687G>A	uc001ijs.2	+	6	728	c.566G>A	c.(565-567)AGG>AAG	p.R189K		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	189					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						GTGAAGTGGAGGAAGCTGGGC	0.522													51	144					0	0	1	0	0
ITIH2	3698	broad.mit.edu	37	10	7762923	7762923	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7762923G>A	uc001ijs.2	+	7	897	c.735G>A	c.(733-735)CAG>CAA	p.Q245Q		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	245					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						AAGGACAACAGAAGGTACCCT	0.502													29	95					0	0	1	0	0
ITIH2	3698	broad.mit.edu	37	10	7769021	7769021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7769021G>A	uc001ijs.2	+	10	1255	c.1093G>A	c.(1093-1095)GCT>ACT	p.A365T		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	365	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						TTTAATTTCAGCTACAAAAAC	0.423													21	65					0	0	1	0	0
ITIH2	3698	broad.mit.edu	37	10	7773905	7773905	+	Silent	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7773905A>T	uc001ijs.2	+	13	1755	c.1593A>T	c.(1591-1593)GGA>GGT	p.G531G		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	531					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						TGGTGGCAGGAAAATTTGACC	0.433													47	92					0	0	1	0	0
ITIH2	3698	broad.mit.edu	37	10	7776939	7776939	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:7776939G>A	uc001ijs.2	+	15	2004	c.1842G>A	c.(1840-1842)CAG>CAA	p.Q614Q		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	614					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CGATCCTGCAGATGTCTCTAG	0.552													34	94					0	0	1	0	0
TAF3	83860	broad.mit.edu	37	10	8006979	8006979	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:8006979C>T	uc010qbd.1	+	3	1506	c.1506C>T	c.(1504-1506)CCC>CCT	p.P502P		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	502					maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						CTCCCACTCCCGAACCTCTCC	0.433													46	108					0	0	1	0	0
TAF3	83860	broad.mit.edu	37	10	8051146	8051146	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:8051146C>T	uc010qbd.1	+	5	2421	c.2421C>T	c.(2419-2421)CTC>CTT	p.L807L		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	807	Pro-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						gccccatgctcgtcagccctg	0.259													5	7					0	0	1	0	0
GATA3	2625	broad.mit.edu	37	10	8100268	8100268	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:8100268G>A	uc001ika.2	+	3	799	c.242G>A	c.(241-243)GGG>GAG	p.G81E	GATA3_uc001ijz.2_Missense_Mutation_p.G81E	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	81					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						TGCCCCACAGGGAGCCAGGTG	0.672			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						33	61					0	0	1	0	0
GATA3	2625	broad.mit.edu	37	10	8100330	8100330	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:8100330G>A	uc001ika.2	+	3	861	c.304G>A	c.(304-306)GCC>ACC	p.A102T	GATA3_uc001ijz.2_Missense_Mutation_p.A102T	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	102				A -> V (in Ref. 2; CAA38877).	aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						CGGCGGCAAAGCCCTGGGCAG	0.687			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						29	119					0	0	1	0	0
GATA3	2625	broad.mit.edu	37	10	8100754	8100754	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:8100754C>T	uc001ika.2	+	3	1285	c.728C>T	c.(727-729)TCC>TTC	p.S243F	GATA3_uc001ijz.2_Missense_Mutation_p.S243F	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	243					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						CTGGGCGGCTCCCCCACCGGC	0.672			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						20	44					0	0	1	0	0
GATA3	2625	broad.mit.edu	37	10	8111504	8111504	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:8111504G>A	uc001ika.2	+	5	1547	c.990G>A	c.(988-990)AGG>AGA	p.R330R	GATA3_uc001ijz.2_Silent_p.R331R	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	330	GATA-type 2.				aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						TCTGGAGGAGGAATGCCAATG	0.557			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						41	80					0	0	1	0	0
GATA3	2625	broad.mit.edu	37	10	8115917	8115917	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:8115917G>A	uc001ika.2	+	6	1820	c.1263G>A	c.(1261-1263)CCG>CCA	p.P421P	GATA3_uc001ijz.2_Silent_p.P422P	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	421					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						CGCCCACGCCGATGCACCCGC	0.647			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						28	71					0	0	1	0	0
CELF2	10659	broad.mit.edu	37	10	11363309	11363309	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:11363309C>T	uc001iki.3	+	11	1307	c.1215C>T	c.(1213-1215)AGC>AGT	p.S405S	CELF2_uc010qbj.1_Silent_p.S411S|CELF2_uc001ikk.2_Silent_p.S430S|CELF2_uc001ikl.3_Silent_p.S418S|CELF2_uc010qbl.1_Silent_p.S381S|CELF2_uc010qbm.1_Silent_p.S177S|CELF2_uc001iko.3_Silent_p.S385S|CELF2_uc001ikp.3_Silent_p.S387S|CELF2_uc010qbn.1_Silent_p.S393S|CELF2_uc010qbo.1_Silent_p.S300S|CELF2_uc010qbp.1_Silent_p.S177S	NM_001025077	NP_001020248	O95319	CELF2_HUMAN	CUG triplet repeat, RNA binding protein 2	405	Necessary for RNA-binding, TNNT2 exon 5 and NMDA R1 exon 21 inclusion.				mRNA processing|regulation of heart contraction	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding				0						ACAGCCAGAGCCTGCTGCAGC	0.657													18	41					0	0	1	0	0
USP6NL	9712	broad.mit.edu	37	10	11504555	11504555	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:11504555G>A	uc001ikt.3	-	15	2693	c.2372C>T	c.(2371-2373)TCA>TTA	p.S791L	USP6NL_uc001iks.1_Missense_Mutation_p.S808L	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	791						intracellular	Rab GTPase activator activity				0						TGCGGCCGGTGAAGCTTTATA	0.532													40	138					0	0	1	0	0
USP6NL	9712	broad.mit.edu	37	10	11504573	11504574	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:11504573_11504574GG>AA	uc001ikt.3	-	15	2674_2675	c.2353_2354CC>TT	c.(2353-2355)CCC>TTC	p.P785F	USP6NL_uc001iks.1_Missense_Mutation_p.P802F	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	785						intracellular	Rab GTPase activator activity				0						ATATCTCACGGGACTATCTACA	0.535													56	164					0	0	1	0	0
USP6NL	9712	broad.mit.edu	37	10	11505674	11505674	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:11505674G>A	uc001ikt.3	-	15	1574	c.1253C>T	c.(1252-1254)CCC>CTC	p.P418L	USP6NL_uc001iks.1_Missense_Mutation_p.P435L	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	418						intracellular	Rab GTPase activator activity				0						CCTGCTCTGGGGGTGCGGGGA	0.652													16	38					0	0	1	0	0
C10orf47	254427	broad.mit.edu	37	10	11911536	11911536	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:11911536C>T	uc001ikx.2	+	4	593	c.439C>T	c.(439-441)CCT>TCT	p.P147S	uc001iky.1_Intron	NM_153256	NP_694988	Q86WR7	CJ047_HUMAN	hypothetical protein LOC254427	147	Pro-rich.									central_nervous_system(1)	1						TGCTGAGACTCCTCCACCTCC	0.667													13	35					0	0	1	0	0
C10orf47	254427	broad.mit.edu	37	10	11911718	11911718	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:11911718G>A	uc001ikx.2	+	4	775	c.621G>A	c.(619-621)GGG>GGA	p.G207G	uc001iky.1_Intron	NM_153256	NP_694988	Q86WR7	CJ047_HUMAN	hypothetical protein LOC254427	207	Pro-rich.									central_nervous_system(1)	1						GGATGGCGGGGAACGAAGCCC	0.731													7	6					0	0	1	0	0
C10orf47	254427	broad.mit.edu	37	10	11911750	11911750	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:11911750G>A	uc001ikx.2	+	4	807	c.653G>A	c.(652-654)AGG>AAG	p.R218K	uc001iky.1_Intron	NM_153256	NP_694988	Q86WR7	CJ047_HUMAN	hypothetical protein LOC254427	218	Pro-rich.									central_nervous_system(1)	1						TCCCCGTTCAGGGAGGGCCGG	0.731													3	6					0	0	1	0	0
UPF2	26019	broad.mit.edu	37	10	11978629	11978629	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:11978629G>A	uc001ila.2	-	18	3935	c.3461C>T	c.(3460-3462)CCC>CTC	p.P1154L	UPF2_uc001ilb.2_Missense_Mutation_p.P1154L|UPF2_uc001ilc.2_Missense_Mutation_p.P1154L	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	1154	Sufficient for interaction with UPF1 C- terminus.|Necessary for interaction with UPF1.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				TCCCAGTGGGGGCCCTTTCCT	0.463													45	73					0	0	1	0	0
CDC123	8872	broad.mit.edu	37	10	12279228	12279228	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:12279228C>T	uc001ill.2	+	9	935	c.651C>T	c.(649-651)TTC>TTT	p.F217F	CDC123_uc001ilm.2_Silent_p.F229F	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123	217					cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						AAGACTTTTTCAAGAAACACA	0.289													28	67					0	0	1	0	0
CAMK1D	57118	broad.mit.edu	37	10	12595318	12595318	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:12595318G>A	uc001ilo.2	+	2	422	c.187G>A	c.(187-189)GAA>AAA	p.E63K	CAMK1D_uc001iln.2_Missense_Mutation_p.E63K	NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	63	Protein kinase.					calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		GAAGGGCAAGGAAAGCAGCAT	0.542													32	76					0	0	1	0	0
MCM10	55388	broad.mit.edu	37	10	13214675	13214675	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:13214675C>T	uc001ima.2	+	5	606	c.505C>T	c.(505-507)CAG>TAG	p.Q169*	MCM10_uc001imb.2_Nonsense_Mutation_p.Q168*|MCM10_uc001imc.2_Nonsense_Mutation_p.Q168*	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	169					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TCAGAGAATTCAGGAGTCAAC	0.468													8	108					0	0	1	0	0
PHYH	5264	broad.mit.edu	37	10	13325819	13325819	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:13325819G>A	uc001imf.2	-	7	787	c.699C>T	c.(697-699)TTC>TTT	p.F233F	PHYH_uc001ime.2_Silent_p.F133F|PHYH_uc001img.2_Silent_p.F216F	NM_006214	NP_006205	O14832	PAHX_HUMAN	phytanoyl-CoA 2-hydroxylase isoform a precursor	233					fatty acid alpha-oxidation|nervous system development	peroxisomal matrix	electron carrier activity|L-ascorbic acid binding|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|phytanoyl-CoA dioxygenase activity|protein binding				0		Ovarian(717;0.0448)			Antihemophilic Factor(DB00025)|Vitamin C(DB00126)	GGATCCCGTGGAACATTTTGT	0.478													39	427					0	0	1	0	0
BEND7	222389	broad.mit.edu	37	10	13534810	13534810	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:13534810C>T	uc001imm.2	-	5	779	c.482G>A	c.(481-483)CGA>CAA	p.R161Q	BEND7_uc001imo.3_Missense_Mutation_p.R174Q	NM_152751	NP_689964	Q8N7W2	BEND7_HUMAN	BEN domain containing 7 isoform 1	213							protein binding			ovary(1)|breast(1)	2						ATTTCTCTTTCGTGAGACAGC	0.433													31	114					0	0	1	0	0
BEND7	222389	broad.mit.edu	37	10	13538855	13538855	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:13538855G>A	uc001imm.2	-	4	623	c.326C>T	c.(325-327)TCA>TTA	p.S109L	BEND7_uc001imo.3_Missense_Mutation_p.S122L	NM_152751	NP_689964	Q8N7W2	BEND7_HUMAN	BEN domain containing 7 isoform 1	161							protein binding			ovary(1)|breast(1)	2						ACAGCAGTTTGATCCAGCTGA	0.378													21	54					0	0	1	0	0
DCLRE1C	64421	broad.mit.edu	37	10	14950960	14950960	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:14950960G>A	uc001inn.2	-	14	1611	c.1526C>T	c.(1525-1527)TCC>TTC	p.S509F	DCLRE1C_uc010qbx.1_Intron|DCLRE1C_uc001ink.2_Missense_Mutation_p.S162F|DCLRE1C_uc001inl.2_Missense_Mutation_p.S389F|DCLRE1C_uc009xji.2_Missense_Mutation_p.S394F|DCLRE1C_uc001inm.2_Missense_Mutation_p.S389F|DCLRE1C_uc001ino.2_Missense_Mutation_p.S394F|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Missense_Mutation_p.S389F|DCLRE1C_uc001inq.2_Missense_Mutation_p.S389F|DCLRE1C_uc001inr.2_Missense_Mutation_p.S394F	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	509					DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						CACTGTGGAGGAAGGGAAGTT	0.458								Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					13	36					0	0	1	0	0
OLAH	55301	broad.mit.edu	37	10	15107640	15107640	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15107640C>T	uc001inu.2	+	6	714	c.460C>T	c.(460-462)CAT>TAT	p.H154Y	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.H207Y	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	154					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						ACAAATAAGTCATTACCTTAT	0.403													15	51					0	0	1	0	0
OLAH	55301	broad.mit.edu	37	10	15113846	15113846	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15113846G>A	uc001inu.2	+	7	879	c.625G>A	c.(625-627)GGA>AGA	p.G209R	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.G262R	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	209					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						ATGTTTTGTTGGATCTGAAGA	0.318													42	98					0	0	1	0	0
OLAH	55301	broad.mit.edu	37	10	15115135	15115135	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15115135G>A	uc001inu.2	+	8	959	c.705G>A	c.(703-705)GGG>GGA	p.G235G	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Silent_p.G288G	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	235					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						AGCTTCCAGGGGGTCACTTTT	0.343													20	43					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255006	15255006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15255006C>T	uc001iob.2	-	8	2588	c.2581G>A	c.(2581-2583)GAA>AAA	p.E861K		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	861	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TCATCGTCTTCCTCTTCCTCG	0.587													64	172					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255045	15255045	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15255045C>T	uc001iob.2	-	8	2549	c.2542G>A	c.(2542-2544)GCC>ACC	p.A848T		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	848	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TGGGGGCTGGCTGCTGGCTCC	0.607													69	130					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255485	15255485	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15255485G>A	uc001iob.2	-	8	2109	c.2102C>T	c.(2101-2103)CCG>CTG	p.P701L		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	701	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GTGCGGAAGCGGCTTCCCACC	0.577													31	84					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255505	15255505	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15255505C>T	uc001iob.2	-	8	2089	c.2082G>A	c.(2080-2082)ATG>ATA	p.M694I		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	694	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CCCCAAGCTCCATCAGGGCCT	0.582													37	89					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255615	15255615	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15255615G>A	uc001iob.2	-	8	1979	c.1972C>T	c.(1972-1974)CCT>TCT	p.P658S		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	658	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GCGTTCTGAGGGCTCCACTCC	0.607													19	71					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255668	15255668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15255668G>A	uc001iob.2	-	8	1926	c.1919C>T	c.(1918-1920)TCC>TTC	p.S640F		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	640	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GATGGCCTGGGAAGACAGGGG	0.612													14	56					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255810	15255810	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15255810C>T	uc001iob.2	-	8	1784	c.1777G>A	c.(1777-1779)GAC>AAC	p.D593N		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	593	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TAGGAGTGGTCCCCGGGGAGT	0.542													59	63					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256006	15256006	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15256006C>T	uc001iob.2	-	8	1588	c.1581G>A	c.(1579-1581)GAG>GAA	p.E527E		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	527	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GCTGTTCTTTCTCAGGTGATG	0.537													28	225					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256171	15256171	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15256171C>T	uc001iob.2	-	8	1423	c.1416G>A	c.(1414-1416)ATG>ATA	p.M472I		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	472	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CTTCTCTTTCCATAGATTTTC	0.468													31	65					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256254	15256254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15256254C>T	uc001iob.2	-	8	1340	c.1333G>A	c.(1333-1335)GAT>AAT	p.D445N		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	445	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GTGAGGTTATCAAAGGAGATC	0.498													23	51					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15290645	15290645	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15290645C>T	uc001iob.2	-	5	754	c.747G>A	c.(745-747)CAG>CAA	p.Q249Q		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	249	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TACCCAGCTTCTGGTCAAACC	0.557													27	72					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15290705	15290705	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15290705G>A	uc001iob.2	-	5	694	c.687C>T	c.(685-687)CCC>CCT	p.P229P		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	229	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GCGTGGCCAGGGGCACAGTGA	0.602													26	83					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15326031	15326031	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15326031G>A	uc001iob.2	-	2	178	c.171C>T	c.(169-171)TTC>TTT	p.F57F		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	57	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CCTGGTTGGTGAAGATCTCGA	0.552													22	48					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15600105	15600105	+	Missense_Mutation	SNP	C	T	T	rs138187704		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15600105C>T	uc001ioc.1	-	26	2734	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K	ITGA8_uc010qcb.1_Missense_Mutation_p.E897K	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	912	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CTGTGGAATTCGACCACATGT	0.498													33	101					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15600127	15600127	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15600127C>T	uc001ioc.1	-	26	2712	c.2712G>A	c.(2710-2712)AGG>AGA	p.R904R	ITGA8_uc010qcb.1_Silent_p.R889R	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	904	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CATCCCTCTTCCTGACAAGAT	0.498													30	88					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15614330	15614330	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15614330G>A	uc001ioc.1	-	25	2517	c.2517C>T	c.(2515-2517)ATC>ATT	p.I839I	ITGA8_uc010qcb.1_Silent_p.I824I	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	839	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CCACCTCCAGGATGGTGTCAC	0.443													39	92					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15646221	15646222	+	Missense_Mutation	DNP	CG	TA	TA	rs45604340		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15646221_15646222CG>TA	uc001ioc.1	-	20	2103_2104	c.2103_2104CG>TA	c.(2101-2106)ATCGAA>ATTAAA	p.E702K	ITGA8_uc010qcb.1_Missense_Mutation_p.E687K	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	702	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TTGTTGCGTTCGATTCCAACAT	0.381													36	77					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15646284	15646284	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15646284C>T	uc001ioc.1	-	20	2041	c.2041G>A	c.(2041-2043)GAA>AAA	p.E681K	ITGA8_uc010qcb.1_Missense_Mutation_p.E666K	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	681	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TATGCTCCTTCCCCTTCATTT	0.358													29	60					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15686188	15686188	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15686188C>T	uc001ioc.1	-	13	1240	c.1240G>A	c.(1240-1242)GAT>AAT	p.D414N	ITGA8_uc010qcb.1_Missense_Mutation_p.D399N	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	414	Extracellular (Potential).|FG-GAP 6.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CCTCTTTGATCCTTGCCTGCA	0.388													21	32					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15688901	15688901	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15688901C>T	uc001ioc.1	-	12	1151	c.1151G>A	c.(1150-1152)GGG>GAG	p.G384E	ITGA8_uc010qcb.1_Missense_Mutation_p.G369E	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	384	Extracellular (Potential).|FG-GAP 6.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						ACCGAATCTCCCAAACGTCTC	0.483													15	51					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15688980	15688980	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15688980C>T	uc001ioc.1	-	12	1072	c.1072G>A	c.(1072-1074)GGG>AGG	p.G358R	ITGA8_uc010qcb.1_Missense_Mutation_p.G343R	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	358	Extracellular (Potential).|FG-GAP 5.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TAGATTTGCCCTACTTCTCTG	0.507													21	64					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15713626	15713626	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15713626C>T	uc001ioc.1	-	8	823	c.823G>A	c.(823-825)GAG>AAG	p.E275K	ITGA8_uc010qcb.1_Intron	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	275	Extracellular (Potential).|FG-GAP 4.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CCAGTAAACTCCCCAGCAGCA	0.353													17	50					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15726098	15726098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15726098G>A	uc001ioc.1	-	4	473	c.473C>T	c.(472-474)ACT>ATT	p.T158I	ITGA8_uc010qcb.1_Missense_Mutation_p.T158I	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	158	Extracellular (Potential).|FG-GAP 2.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CGGTTTAAGAGTTCTCCAGTG	0.408													5	69					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15729966	15729966	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15729966T>A	uc001ioc.1	-	3	415	c.415A>T	c.(415-417)ACA>TCA	p.T139S	ITGA8_uc010qcb.1_Missense_Mutation_p.T139S	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	139	Extracellular (Potential).|FG-GAP 2.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GCTTTCACTGTTGCTCCAAAC	0.423													20	126					0	0	1	0	0
FAM188A	80013	broad.mit.edu	37	10	15828640	15828640	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:15828640G>A	uc001iod.1	-	13	1257	c.1036C>T	c.(1036-1038)CTC>TTC	p.L346F	FAM188A_uc001ioe.1_Missense_Mutation_p.L173F	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	346					apoptosis	nucleus	calcium ion binding			ovary(1)	1						TTCTTCATGAGATTTATACTA	0.328													19	103					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	16878310	16878310	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:16878310C>T	uc001ioo.2	-	63	10156	c.10104G>A	c.(10102-10104)ATG>ATA	p.M3368I		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3368	CUB 25.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTGCAGTACTCATAGAAGAAT	0.403													35	67					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	16878368	16878368	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:16878368G>A	uc001ioo.2	-	63	10098	c.10046C>T	c.(10045-10047)TCA>TTA	p.S3349L		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3349	CUB 25.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CTGAAATCTTGAATTTCCGTG	0.378													28	83					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	16882980	16882980	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:16882980G>A	uc001ioo.2	-	61	9782	c.9730C>T	c.(9730-9732)CCT>TCT	p.P3244S		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3244	CUB 24.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GAGATAAAAGGAGCAGGTACT	0.388													25	70					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	16955966	16955967	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:16955966_16955967AG>TA	uc001ioo.2	-	48	7428_7429	c.7376_7377CT>TA	c.(7375-7377)TCT>TTA	p.S2459L		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2459	CUB 18.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ATGTTCCAATAGAGCCCTGAAG	0.475													31	75					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	16967672	16967672	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:16967672G>A	uc001ioo.2	-	42	6425	c.6373C>T	c.(6373-6375)CAA>TAA	p.Q2125*		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2125	CUB 15.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AGGCCACTTTGGACCAGGACG	0.502													26	63					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	16992006	16992006	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:16992006G>A	uc001ioo.2	-	34	5126	c.5074C>T	c.(5074-5076)CTC>TTC	p.L1692F		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1692	CUB 11.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GTACCTCGGAGGGGCGCGTCT	0.463													4	18					0	0	1	0	0
ST8SIA6	338596	broad.mit.edu	37	10	17369021	17369021	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:17369021G>A	uc001ipd.2	-	6	627	c.627C>T	c.(625-627)TTC>TTT	p.F209F	ST8SIA6_uc010qce.1_Intron	NM_001004470	NP_001004470	P61647	SIA8F_HUMAN	ST8 alpha-N-acetyl-neuraminide	209	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(1)	1						ACCTAAAAACGAAGTCGGATT	0.383													30	51					0	0	1	0	0
SLC39A12	221074	broad.mit.edu	37	10	18250623	18250623	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:18250623G>C	uc001ipo.2	+	3	648	c.375G>C	c.(373-375)CAG>CAC	p.Q125H	SLC39A12_uc001ipn.2_Missense_Mutation_p.Q125H|SLC39A12_uc001ipp.2_Missense_Mutation_p.Q125H|SLC39A12_uc010qck.1_5'UTR	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	125	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TTATTCATCAGGAAGAGATCT	0.383													28	70					0	0	1	0	0
SLC39A12	221074	broad.mit.edu	37	10	18276413	18276413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:18276413G>A	uc001ipo.2	+	7	1375	c.1102G>A	c.(1102-1104)GGC>AGC	p.G368S	SLC39A12_uc001ipn.2_Missense_Mutation_p.G368S|SLC39A12_uc001ipp.2_Missense_Mutation_p.G368S|SLC39A12_uc010qck.1_Missense_Mutation_p.G234S	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	368	Cytoplasmic (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						CTTAGAATACGGCTACAGCAC	0.522													26	49					0	0	1	0	0
CACNB2	783	broad.mit.edu	37	10	18828563	18828563	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:18828563G>A	uc001ipr.2	+	14	1953	c.1893G>A	c.(1891-1893)AAG>AAA	p.K631K	CACNB2_uc009xjz.1_Silent_p.K381K|CACNB2_uc001ips.2_Silent_p.K607K|CACNB2_uc001ipt.2_Silent_p.K593K|CACNB2_uc001ipu.2_Silent_p.K603K|CACNB2_uc001ipv.2_Silent_p.K579K|CACNB2_uc009xka.1_Silent_p.K565K|CACNB2_uc001ipw.2_Silent_p.K538K|CACNB2_uc001ipx.2_Silent_p.K576K|CACNB2_uc001ipz.2_Silent_p.K553K|CACNB2_uc001ipy.2_Silent_p.K577K|CACNB2_uc010qco.1_Silent_p.K545K|CACNB2_uc001iqa.2_Silent_p.K583K|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	631					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	ATAAATCCAAGGATCGCTACT	0.537													9	84					0	0	1	0	0
ARL5B	221079	broad.mit.edu	37	10	18964126	18964126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:18964126C>T	uc001iqd.1	+	6	775	c.521C>T	c.(520-522)TCC>TTC	p.S174F	uc001iqe.2_5'Flank	NM_178815	NP_848930	Q96KC2	ARL5B_HUMAN	ADP-ribosylation factor-like 8	174					small GTPase mediated signal transduction	intracellular	GTP binding			ovary(1)	1						TGGATGACCTCCCGGATTGGT	0.343													11	84					0	0	1	0	0
PLXDC2	84898	broad.mit.edu	37	10	20432301	20432301	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:20432301G>A	uc001iqg.1	+	5	1256	c.619G>A	c.(619-621)GAT>AAT	p.D207N	PLXDC2_uc001iqh.1_Missense_Mutation_p.D158N|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	207	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						GGCAAATTTCGATCCCAGTGT	0.353													46	104					0	0	1	0	0
PLXDC2	84898	broad.mit.edu	37	10	20466293	20466293	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:20466293C>T	uc001iqg.1	+	9	1653	c.1016C>T	c.(1015-1017)TCT>TTT	p.S339F	PLXDC2_uc001iqh.1_Missense_Mutation_p.S290F|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	339	Extracellular (Potential).|PSI.					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						CCCTGTGTATCTTCTCAGATT	0.333													47	133					0	0	1	0	0
PLXDC2	84898	broad.mit.edu	37	10	20534356	20534356	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:20534356C>T	uc001iqg.1	+	13	2032	c.1395C>T	c.(1393-1395)CTC>CTT	p.L465L	PLXDC2_uc001iqh.1_Silent_p.L416L|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	465	Helical; (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TCCTGGTCCTCATTGTAGCCA	0.473													60	149					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21074807	21074807	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21074807C>T	uc001iqi.2	-	28	3311	c.2914G>A	c.(2914-2916)GAG>AAG	p.E972K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Missense_Mutation_p.E228K	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	972	SH3.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						AAGGAGACCTCGTCTTCATCC	0.502													50	52					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21102957	21102957	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21102957C>T	uc001iqi.2	-	23	2654	c.2257G>A	c.(2257-2259)GAC>AAC	p.D753N	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	753	Nebulin 21.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TGTTTATGGTCCTGGGTATAT	0.328													15	64					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21108367	21108367	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21108367C>T	uc001iqi.2	-	20	2438	c.2041G>A	c.(2041-2043)GAG>AAG	p.E681K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	681	Nebulin 19.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CTCAGCTGCTCCTGGTTTCGC	0.393													84	153					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21120147	21120147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21120147C>T	uc001iqi.2	-	16	2046	c.1649G>A	c.(1648-1650)AGG>AAG	p.R550K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	550	Nebulin 15.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TTCAGATGTCCTCTTGGCTCG	0.388													14	74					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21120193	21120193	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21120193C>T	uc001iqi.2	-	16	2000	c.1603G>A	c.(1603-1605)GGA>AGA	p.G535R	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	535	Nebulin 15.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						ACTTGCATTCCTTTCCCTTTA	0.368													6	74					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21120489	21120489	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21120489C>T	uc001iqi.2	-	15	1870	c.1473G>A	c.(1471-1473)GAG>GAA	p.E491E	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	491	Nebulin 13.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TAATTTCAGTCTCCAGATCTC	0.428													25	52					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21157616	21157616	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21157616C>T	uc001iqi.2	-	7	1058	c.661G>A	c.(661-663)GAA>AAA	p.E221K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	221	Nebulin 6.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TTAGAAGCTTCCACGGCATGT	0.343													21	198					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21158759	21158759	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21158759C>T	uc001iqi.2	-	6	889	c.492G>A	c.(490-492)AGG>AGA	p.R164R	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	164	Nebulin 4.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GCACGTCTTTCCTATAAGAAA	0.363													16	70					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21178778	21178778	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21178778G>A	uc001iqi.2	-	3	651	c.254C>T	c.(253-255)TCT>TTT	p.S85F	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	85	Nebulin 2.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CCTTACCTCAGAAATAAAAGC	0.308													25	58					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21186092	21186092	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21186092C>T	uc001iqi.2	-	1	440	c.43G>A	c.(43-45)GAA>AAA	p.E15K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	15					regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						atcttttcttcttcagtttca	0.254													8	25					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21309123	21309123	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21309123G>A	uc001iqk.2	-	3	526	c.172C>T	c.(172-174)CCG>TCG	p.P58S		NM_213569	NP_998734	O76041	NEBL_HUMAN	nebulette non-muscle isoform	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GACTGCTTCGGGTAGTGTCTG	0.413													8	104					0	0	1	0	0
C10orf113	387638	broad.mit.edu	37	10	21414770	21414770	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21414770C>T	uc001iqm.2	-	2	440	c.420G>A	c.(418-420)CTG>CTA	p.L140L	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	150										ovary(3)|pancreas(1)	4						AAGTCATTTTCAGCACCTTCT	0.393													51	163					0	0	1	0	0
C10orf113	387638	broad.mit.edu	37	10	21414830	21414830	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:21414830C>T	uc001iqm.2	-	2	380	c.360G>A	c.(358-360)GGG>GGA	p.G120G	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	130										ovary(3)|pancreas(1)	4						ATCCATGCTTCCCTTTGGTTA	0.463													55	114					0	0	1	0	0
DNAJC1	64215	broad.mit.edu	37	10	22048148	22048148	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:22048148G>A	uc001irc.2	-	11	1834	c.1547C>T	c.(1546-1548)TCC>TTC	p.S516F	DNAJC1_uc001ird.2_Missense_Mutation_p.S402F	NM_022365	NP_071760	Q96KC8	DNJC1_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 1	516	SANT 2.|Cytoplasmic (By similarity).				negative regulation of proteolysis|regulation of protein secretion|regulation of transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	ATPase activator activity|DNA binding|heat shock protein binding|unfolded protein binding			lung(1)	1		Breast(68;0.00869)|Prostate(175;0.0181)|Lung SC(717;0.0262)				GCGGTCAGAGGATCCCCTTGG	0.542													49	185					0	0	1	0	0
BMI1	648	broad.mit.edu	37	10	22616968	22616968	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:22616968G>A	uc001irh.2	+	6	1045	c.406G>A	c.(406-408)GAA>AAA	p.E136K	BMI1_uc009xkg.2_Missense_Mutation_p.E279K	NM_005180	NP_005171	P35226	BMI1_HUMAN	BMI1 polycomb ring finger oncogene	136					hemopoiesis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fibroblast proliferation|positive regulation of ubiquitin-protein ligase activity|segment specification|transcription, DNA-dependent	cytoplasm|nucleolus|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			ovary(1)|skin(1)	2						CTTATCCATTGAATTCTTTGA	0.299													28	79					0	0	1	0	0
SPAG6	9576	broad.mit.edu	37	10	22675776	22675776	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:22675776C>T	uc001iri.2	+	5	708	c.566C>T	c.(565-567)TCG>TTG	p.S189L	SPAG6_uc001irj.2_Missense_Mutation_p.S189L|SPAG6_uc010qct.1_Missense_Mutation_p.S159L|SPAG6_uc009xkh.2_Missense_Mutation_p.S167L	NM_012443	NP_036575	O75602	SPAG6_HUMAN	sperm associated antigen 6 isoform 1	189	ARM 4.				cell projection organization|spermatid development	axoneme|cilium|cytoplasm|flagellum|microtubule	binding			breast(1)	1						ATTGCTGCTTCGGCCCTCAGT	0.483													17	91					0	0	1	0	0
SPAG6	9576	broad.mit.edu	37	10	22676877	22676877	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:22676877G>A	uc001iri.2	+	6	946	c.804G>A	c.(802-804)AAG>AAA	p.K268K	SPAG6_uc001irj.2_Silent_p.K268K|SPAG6_uc010qct.1_Silent_p.K238K|SPAG6_uc009xkh.2_Silent_p.K246K	NM_012443	NP_036575	O75602	SPAG6_HUMAN	sperm associated antigen 6 isoform 1	268	ARM 6.				cell projection organization|spermatid development	axoneme|cilium|cytoplasm|flagellum|microtubule	binding			breast(1)	1						AATACGTGAAGAAAAATGCTT	0.358													19	40					0	0	1	0	0
SPAG6	9576	broad.mit.edu	37	10	22700095	22700095	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:22700095G>A	uc001iri.2	+	10	1592	c.1450G>A	c.(1450-1452)GAA>AAA	p.E484K	SPAG6_uc001irj.2_Intron|SPAG6_uc010qct.1_Missense_Mutation_p.E454K|SPAG6_uc009xkh.2_Missense_Mutation_p.E462K	NM_012443	NP_036575	O75602	SPAG6_HUMAN	sperm associated antigen 6 isoform 1	484					cell projection organization|spermatid development	axoneme|cilium|cytoplasm|flagellum|microtubule	binding			breast(1)	1						TTACCCCGAGGAAATAGTGAG	0.363													17	52					0	0	1	0	0
SPAG6	9576	broad.mit.edu	37	10	22705588	22705588	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:22705588G>A	uc001iri.2	+	11	1643	c.1501G>A	c.(1501-1503)GTG>ATG	p.V501M	SPAG6_uc001irj.2_Missense_Mutation_p.G452D|SPAG6_uc010qct.1_Missense_Mutation_p.V471M|SPAG6_uc009xkh.2_3'UTR	NM_012443	NP_036575	O75602	SPAG6_HUMAN	sperm associated antigen 6 isoform 1	501					cell projection organization|spermatid development	axoneme|cilium|cytoplasm|flagellum|microtubule	binding			breast(1)	1						TCTGCAGAGGGTGGACAGCTA	0.358													39	107					0	0	1	0	0
PIP4K2A	5305	broad.mit.edu	37	10	22839618	22839618	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:22839618G>A	uc001irl.3	-	7	1010	c.762C>T	c.(760-762)GTC>GTT	p.V254V	PIP4K2A_uc010qcu.1_Silent_p.V114V	NM_005028	NP_005019	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	254	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			ovary(1)|skin(1)	2						TTTCCAGGAAGACCTTCTTGT	0.368											OREG0020068	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	187					0	0	1	0	0
ARMC3	219681	broad.mit.edu	37	10	23250889	23250889	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:23250889C>T	uc001irm.3	+	7	697	c.614C>T	c.(613-615)CCA>CTA	p.P205L	ARMC3_uc010qcv.1_Missense_Mutation_p.P205L|ARMC3_uc010qcw.1_Intron	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	205	ARM 5.						binding				0						TCAGAATATCCAGTGATTCAG	0.373													15	38					0	0	1	0	0
PTF1A	256297	broad.mit.edu	37	10	23482809	23482809	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:23482809G>A	uc001irp.2	+	2	961	c.961G>A	c.(961-963)GAA>AAA	p.E321K		NM_178161	NP_835455	Q7RTS3	PTF1A_HUMAN	pancreas specific transcription factor, 1a	321					endocrine pancreas development|exocrine pancreas development|regulation of transcription, DNA-dependent|tissue development|transcription, DNA-dependent	cytoplasm|transcription factor complex				pancreas(1)|skin(1)	2						CATAGAAAACGAACCACCATT	0.398													38	132					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24669876	24669876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24669876G>A	uc001iru.3	+	3	836	c.433G>A	c.(433-435)GCT>ACT	p.A145T	KIAA1217_uc001irs.2_Missense_Mutation_p.A65T|KIAA1217_uc001irt.3_Missense_Mutation_p.A145T|KIAA1217_uc010qcy.1_Missense_Mutation_p.A145T|KIAA1217_uc010qcz.1_Missense_Mutation_p.A145T|KIAA1217_uc001irv.1_5'UTR|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	145					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGAGACGTCCGCTGATTCTTT	0.542													21	80					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762606	24762606	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24762606G>A	uc001iru.3	+	6	1699	c.1296G>A	c.(1294-1296)GCG>GCA	p.A432A	KIAA1217_uc001irs.2_Silent_p.A352A|KIAA1217_uc001irt.3_Silent_p.A432A|KIAA1217_uc010qcy.1_Silent_p.A432A|KIAA1217_uc010qcz.1_Silent_p.A432A|KIAA1217_uc001irv.1_Silent_p.A282A|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Silent_p.A150A|KIAA1217_uc001irz.2_Silent_p.A150A|KIAA1217_uc001irx.2_Silent_p.A150A|KIAA1217_uc001iry.2_Silent_p.A150A	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	432					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TCCGGTCAGCGAGTGCTTATT	0.507													22	69					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762729	24762729	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24762729C>T	uc001iru.3	+	6	1822	c.1419C>T	c.(1417-1419)GCC>GCT	p.A473A	KIAA1217_uc001irs.2_Silent_p.A393A|KIAA1217_uc001irt.3_Silent_p.A473A|KIAA1217_uc010qcy.1_Silent_p.A473A|KIAA1217_uc010qcz.1_Silent_p.A473A|KIAA1217_uc001irv.1_Silent_p.A323A|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Silent_p.A191A|KIAA1217_uc001irz.2_Silent_p.A191A|KIAA1217_uc001irx.2_Silent_p.A191A|KIAA1217_uc001iry.2_Silent_p.A191A	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	473					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CACCCCCTGCCTCTCCTCACA	0.532													38	84					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762896	24762896	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24762896G>A	uc001iru.3	+	6	1989	c.1586G>A	c.(1585-1587)GGA>GAA	p.G529E	KIAA1217_uc001irs.2_Missense_Mutation_p.G449E|KIAA1217_uc001irt.3_Missense_Mutation_p.G529E|KIAA1217_uc010qcy.1_Missense_Mutation_p.G529E|KIAA1217_uc010qcz.1_Missense_Mutation_p.G529E|KIAA1217_uc001irv.1_Missense_Mutation_p.G379E|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.G247E|KIAA1217_uc001irz.2_Missense_Mutation_p.G247E|KIAA1217_uc001irx.2_Missense_Mutation_p.G247E|KIAA1217_uc001iry.2_Missense_Mutation_p.G247E	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	529					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGCGCTGCAGGATTATCCAGC	0.552													22	75					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24813411	24813411	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24813411G>A	uc001iru.3	+	13	3019	c.2616G>A	c.(2614-2616)GCG>GCA	p.A872A	KIAA1217_uc001irs.2_Silent_p.A792A|KIAA1217_uc001irt.3_Silent_p.A837A|KIAA1217_uc010qcy.1_Silent_p.A837A|KIAA1217_uc010qcz.1_Silent_p.A837A|KIAA1217_uc001irv.1_Silent_p.A687A|KIAA1217_uc010qda.1_Intron|KIAA1217_uc001irw.2_Silent_p.A555A|KIAA1217_uc001irz.2_Silent_p.A555A|KIAA1217_uc001irx.2_Silent_p.A555A|KIAA1217_uc001iry.2_Silent_p.A555A	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	872					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CTGGCGATGCGAAGTCGGAAG	0.642													18	48					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24822131	24822131	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24822131G>A	uc001iru.3	+	16	3782	c.3379G>A	c.(3379-3381)GAA>AAA	p.E1127K	KIAA1217_uc001irs.2_Missense_Mutation_p.E1047K|KIAA1217_uc001irt.3_Missense_Mutation_p.E1092K|KIAA1217_uc010qcy.1_Missense_Mutation_p.E1091K|KIAA1217_uc010qcz.1_Missense_Mutation_p.E1092K|KIAA1217_uc001irw.2_Missense_Mutation_p.E810K|KIAA1217_uc001irz.2_Missense_Mutation_p.E810K|KIAA1217_uc001irx.2_Missense_Mutation_p.E810K|KIAA1217_uc001iry.2_Missense_Mutation_p.E810K	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1127					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GGAGGAAGAAGAAGAAGAAGG	0.552													15	60					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24832642	24832642	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24832642G>A	uc001iru.3	+	19	4846	c.4443G>A	c.(4441-4443)GAG>GAA	p.E1481E	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Silent_p.E1164E|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Silent_p.E317E	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1481	Potential.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						aaaagatagaggaggaggaag	0.343													6	51					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24832666	24832666	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24832666G>A	uc001iru.3	+	19	4870	c.4467G>A	c.(4465-4467)GGG>GGA	p.G1489G	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Silent_p.G1172G|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Silent_p.G325G	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1489	Potential.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						aggaaaatggggaTTCTGTAG	0.328													12	32					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24833228	24833228	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24833228G>A	uc001iru.3	+	19	5432	c.5029G>A	c.(5029-5031)GAA>AAA	p.E1677K	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Missense_Mutation_p.E1360K|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Missense_Mutation_p.E513K	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1677	Potential.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TAAACAGCTCGAAAATACAAT	0.433													24	60					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24833351	24833351	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24833351C>T	uc001iru.3	+	19	5555	c.5152C>T	c.(5152-5154)CCG>TCG	p.P1718S	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Missense_Mutation_p.P1401S|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Missense_Mutation_p.P554S	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1718					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CTTGCTAGTTCCGGATGAAGG	0.512													25	41					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24833950	24833950	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24833950C>T	uc001iru.3	+	20	5655	c.5252C>T	c.(5251-5253)CCC>CTC	p.P1751L	KIAA1217_uc001irs.2_Missense_Mutation_p.P1072L|KIAA1217_uc001irt.3_Missense_Mutation_p.P1117L|KIAA1217_uc010qcy.1_Missense_Mutation_p.P1182L|KIAA1217_uc010qcz.1_Missense_Mutation_p.P1157L|KIAA1217_uc001irw.2_Missense_Mutation_p.P901L|KIAA1217_uc001irz.2_Missense_Mutation_p.P835L|KIAA1217_uc001irx.2_Missense_Mutation_p.P1434L|KIAA1217_uc001iry.2_Missense_Mutation_p.P875L	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1751					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						ATGCCTGTCCCCATGAGTGCC	0.577													59	128					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24834974	24834974	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24834974C>T	uc001iru.3	+	21	5956	c.5553C>T	c.(5551-5553)GCC>GCT	p.A1851A	KIAA1217_uc001irs.2_Silent_p.A1172A|KIAA1217_uc001irt.3_Silent_p.A1217A|KIAA1217_uc010qcy.1_Silent_p.A1282A|KIAA1217_uc010qcz.1_Silent_p.A1257A|KIAA1217_uc001irw.2_3'UTR|KIAA1217_uc001irz.2_3'UTR|KIAA1217_uc001irx.2_3'UTR|KIAA1217_uc001iry.2_3'UTR	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1851	Ser-rich.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CTCACTCTGCCTCCCTCATCC	0.493													29	144					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24835007	24835007	+	Silent	SNP	G	A	A	rs78374720		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24835007G>A	uc001iru.3	+	21	5989	c.5586G>A	c.(5584-5586)TTG>TTA	p.L1862L	KIAA1217_uc001irs.2_Silent_p.L1183L|KIAA1217_uc001irt.3_Silent_p.L1228L|KIAA1217_uc010qcy.1_Silent_p.L1293L|KIAA1217_uc010qcz.1_Silent_p.L1268L|KIAA1217_uc001irw.2_3'UTR|KIAA1217_uc001irz.2_3'UTR|KIAA1217_uc001irx.2_3'UTR|KIAA1217_uc001iry.2_3'UTR	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1862	Ser-rich.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						ATGGCTCTTTGAAGTTTCAGA	0.438													52	113					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24835206	24835206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24835206G>A	uc001iru.3	+	21	6188	c.5785G>A	c.(5785-5787)GGA>AGA	p.G1929R	KIAA1217_uc001irs.2_Missense_Mutation_p.G1250R|KIAA1217_uc001irt.3_Missense_Mutation_p.G1295R|KIAA1217_uc010qcy.1_Missense_Mutation_p.G1360R|KIAA1217_uc010qcz.1_Missense_Mutation_p.G1335R|KIAA1217_uc001irw.2_3'UTR|KIAA1217_uc001irz.2_3'UTR|KIAA1217_uc001irx.2_3'UTR|KIAA1217_uc001iry.2_3'UTR	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1929					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GGCACAGAATGGAAGTTCAAG	0.383													26	61					0	0	1	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24873522	24873522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24873522G>A	uc001isb.2	-	26	6183	c.5696C>T	c.(5695-5697)TCT>TTT	p.S1899F	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1898					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						GGTGCTGGAAGAACTGCCTGT	0.493													47	107					0	0	1	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24884069	24884069	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24884069G>A	uc001isb.2	-	20	4250	c.3763C>T	c.(3763-3765)CGT>TGT	p.R1255C	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1254	Rho-GAP.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						GTTTTCAGACGATCTAGAGGA	0.303													19	49					0	0	1	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24959159	24959159	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:24959159T>A	uc001isb.2	-	3	718	c.231A>T	c.(229-231)CAA>CAT	p.Q77H	ARHGAP21_uc009xkl.1_Missense_Mutation_p.Q77H|ARHGAP21_uc001isc.1_Missense_Mutation_p.Q77H|ARHGAP21_uc001isd.1_Missense_Mutation_p.Q77H	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	76	PDZ.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						TATATGAAAATTGAATTGCAG	0.398													28	49					0	0	1	0	0
PRTFDC1	56952	broad.mit.edu	37	10	25160960	25160960	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25160960G>A	uc001ise.1	-	4	401	c.372C>T	c.(370-372)ATC>ATT	p.I124I	PRTFDC1_uc010qdd.1_Silent_p.I124I|PRTFDC1_uc001isf.1_RNA|PRTFDC1_uc009xkm.1_RNA	NM_020200	NP_064585	Q9NRG1	PRDC1_HUMAN	phosphoribosyl transferase domain containing 1	124					adenine salvage|central nervous system neuron development|cerebral cortex neuron differentiation|cytolysis|dendrite morphogenesis|GMP salvage|grooming behavior|hypoxanthine metabolic process|IMP salvage|lymphocyte proliferation|positive regulation of dopamine metabolic process|purine ribonucleoside salvage|response to amphetamine|striatum development	cytosol	hypoxanthine phosphoribosyltransferase activity|magnesium ion binding|nucleotide binding|protein homodimerization activity			ovary(1)	1						CATCGCCTCCGATTATCTGCA	0.453													90	202					0	0	1	0	0
PRTFDC1	56952	broad.mit.edu	37	10	25226182	25226182	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25226182C>T	uc001ise.1	-	3	299	c.270G>A	c.(268-270)AAG>AAA	p.K90K	PRTFDC1_uc010qdd.1_Silent_p.K90K|PRTFDC1_uc001isf.1_RNA|PRTFDC1_uc009xkm.1_RNA	NM_020200	NP_064585	Q9NRG1	PRDC1_HUMAN	phosphoribosyl transferase domain containing 1	90					adenine salvage|central nervous system neuron development|cerebral cortex neuron differentiation|cytolysis|dendrite morphogenesis|GMP salvage|grooming behavior|hypoxanthine metabolic process|IMP salvage|lymphocyte proliferation|positive regulation of dopamine metabolic process|purine ribonucleoside salvage|response to amphetamine|striatum development	cytosol	hypoxanthine phosphoribosyltransferase activity|magnesium ion binding|nucleotide binding|protein homodimerization activity			ovary(1)	1						GGCTGATGTTCTTAAGGTGTT	0.373													36	83					0	0	1	0	0
ENKUR	219670	broad.mit.edu	37	10	25273727	25273727	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25273727C>T	uc001isg.1	-	5	867	c.702G>A	c.(700-702)ATG>ATA	p.M234I	ENKUR_uc001ish.1_Missense_Mutation_p.M172I	NM_145010	NP_659447	Q8TC29	ENKUR_HUMAN	enkurin	234						cilium|flagellum	calmodulin binding|SH3 domain binding				0						CTAGTTGTTTCATTTCTTCTT	0.348													6	79					0	0	1	0	0
ENKUR	219670	broad.mit.edu	37	10	25273813	25273813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25273813C>T	uc001isg.1	-	5	781	c.616G>A	c.(616-618)GAG>AAG	p.E206K	ENKUR_uc001ish.1_Missense_Mutation_p.E144K	NM_145010	NP_659447	Q8TC29	ENKUR_HUMAN	enkurin	206						cilium|flagellum	calmodulin binding|SH3 domain binding				0						TTATGCACCTCTTCCCAGTTC	0.393													19	48					0	0	1	0	0
ENKUR	219670	broad.mit.edu	37	10	25279504	25279504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25279504C>T	uc001isg.1	-	4	647	c.482G>A	c.(481-483)CGA>CAA	p.R161Q	ENKUR_uc001ish.1_Missense_Mutation_p.R99Q	NM_145010	NP_659447	Q8TC29	ENKUR_HUMAN	enkurin	161						cilium|flagellum	calmodulin binding|SH3 domain binding				0						TTCCTCGTTTCGCTTACATAT	0.358													12	59					0	0	1	0	0
ENKUR	219670	broad.mit.edu	37	10	25279520	25279520	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25279520C>T	uc001isg.1	-	4	631	c.466G>A	c.(466-468)GAA>AAA	p.E156K	ENKUR_uc001ish.1_Missense_Mutation_p.E94K	NM_145010	NP_659447	Q8TC29	ENKUR_HUMAN	enkurin	156						cilium|flagellum	calmodulin binding|SH3 domain binding				0						CATATGTATTCAGGTGTGACA	0.348													6	55					0	0	1	0	0
ENKUR	219670	broad.mit.edu	37	10	25284783	25284783	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25284783C>T	uc001isg.1	-	3	404	c.239G>A	c.(238-240)CGG>CAG	p.R80Q	ENKUR_uc001ish.1_Missense_Mutation_p.R18Q	NM_145010	NP_659447	Q8TC29	ENKUR_HUMAN	enkurin	80						cilium|flagellum	calmodulin binding|SH3 domain binding				0						GGGCACGTTCCGATCAAAGTT	0.333													13	133					0	0	1	0	0
THNSL1	79896	broad.mit.edu	37	10	25312259	25312259	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25312259C>T	uc001isi.3	+	3	436	c.107C>T	c.(106-108)ACC>ATC	p.T36I	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	36					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	CTTTCAAGAACCTTTGCACTT	0.388													36	99					0	0	1	0	0
THNSL1	79896	broad.mit.edu	37	10	25313252	25313252	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25313252C>T	uc001isi.3	+	3	1429	c.1100C>T	c.(1099-1101)CCA>CTA	p.P367L	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	367					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	CACTGTATCCCACCAAGTTGC	0.388													36	114					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25684929	25684929	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25684929G>A	uc001isj.2	+	3	1158	c.1098G>A	c.(1096-1098)GTG>GTA	p.V366V		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	366	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TCTTACCAGTGAACAACTTTC	0.358													13	37					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25839905	25839905	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25839905G>A	uc001isj.2	+	6	1465	c.1405G>A	c.(1405-1407)GTT>ATT	p.V469I		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	469	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CATCCCACAGGTTGTTATTTT	0.408													28	85					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25861613	25861613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25861613G>A	uc001isj.2	+	7	1610	c.1550G>A	c.(1549-1551)CGA>CAA	p.R517Q		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	517	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						ACGGCTCAACGAATTCCATAT	0.408													24	143					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25885707	25885707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25885707G>A	uc001isj.2	+	10	2194	c.2134G>A	c.(2134-2136)GAG>AAG	p.E712K	GPR158_uc001isk.2_Missense_Mutation_p.E87K	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	712	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CTTGGATCCAGAGGACATTCG	0.488													20	72					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25886970	25886970	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25886970G>A	uc001isj.2	+	11	2475	c.2415G>A	c.(2413-2415)GAG>GAA	p.E805E	GPR158_uc001isk.2_Silent_p.E180E	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	805	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CCAAGGAGGAGACCCTGAAAA	0.547													44	121					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25887578	25887578	+	Missense_Mutation	SNP	C	T	T	rs151132862		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:25887578C>T	uc001isj.2	+	11	3083	c.3023C>T	c.(3022-3024)CCT>CTT	p.P1008L	GPR158_uc001isk.2_Missense_Mutation_p.P383L	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	1008	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GAGGTGTGTCCTTGGGAGGTT	0.478													33	56					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26241088	26241088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26241088C>T	uc001isn.2	+	3	409	c.49C>T	c.(49-51)CCT>TCT	p.P17S	MYO3A_uc009xko.1_Missense_Mutation_p.P17S|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.P17S|MYO3A_uc001ism.2_Missense_Mutation_p.P17S	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	17					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CTTTCCTGATCCTTCTGATAC	0.333													26	75					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26312975	26312975	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26312975G>A	uc001isn.2	+	9	1116	c.756G>A	c.(754-756)CAG>CAA	p.Q252Q	MYO3A_uc009xko.1_Silent_p.Q252Q|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Silent_p.Q252Q	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	252	Protein kinase.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AACTAAGGCAGCCTGAGCTAT	0.378													55	141					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26414504	26414504	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26414504T>A	uc001isn.2	+	19	2441	c.2081T>A	c.(2080-2082)ATT>AAT	p.I694N	MYO3A_uc009xko.1_Missense_Mutation_p.I694N|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	694	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GTCAATTGCATTAACAGTTTG	0.348													13	139					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26434399	26434399	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26434399C>T	uc001isn.2	+	22	2801	c.2441C>T	c.(2440-2442)TCA>TTA	p.S814L	MYO3A_uc009xko.1_Missense_Mutation_p.S814L|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	814	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AACCTGAAATCACAATACTTC	0.323													11	49					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26446395	26446395	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26446395C>T	uc001isn.2	+	26	3310	c.2950C>T	c.(2950-2952)CGA>TGA	p.R984*	MYO3A_uc009xko.1_Nonsense_Mutation_p.R984*|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	984	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AGCAAGAATTCGAAGACTAGG	0.363													39	101					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26462936	26462936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26462936G>A	uc001isn.2	+	30	4103	c.3743G>A	c.(3742-3744)AGG>AAG	p.R1248K	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1248					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						ACAGAGGAGAGGAATTGTGAA	0.438													17	70					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26463032	26463032	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26463032C>T	uc001isn.2	+	30	4199	c.3839C>T	c.(3838-3840)TCC>TTC	p.S1280F	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1280					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AATGAGACTTCCTTTAAAAAA	0.398													16	40					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26465770	26465770	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26465770C>T	uc001isn.2	+	31	4794	c.4434C>T	c.(4432-4434)CTC>CTT	p.L1478L	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1478					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AGCAGTGCCTCTCAGGTAAAA	0.388													17	67					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26482151	26482151	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26482151G>A	uc001isn.2	+	32	4816	c.4456G>A	c.(4456-4458)GAG>AAG	p.E1486K	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1486					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TAAAGGAGAGGAGCCAAAAAT	0.353													19	53					0	0	1	0	0
APBB1IP	54518	broad.mit.edu	37	10	26781309	26781309	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26781309G>A	uc001iss.2	+	3	375	c.54G>A	c.(52-54)GAG>GAA	p.E18E	APBB1IP_uc001isr.2_Silent_p.E18E|APBB1IP_uc009xks.1_Silent_p.E18E	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	18					blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						TGCTGGGAGAGATGGATCTTC	0.388													39	96					0	0	1	0	0
APBB1IP	54518	broad.mit.edu	37	10	26802488	26802488	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26802488G>A	uc001iss.2	+	8	1033	c.712G>A	c.(712-714)GAA>AAA	p.E238K	APBB1IP_uc009xks.1_Missense_Mutation_p.E238K	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	238	Ras-associating.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						TGAAGACCATGAAAATGTTGT	0.338													25	58					0	0	1	0	0
APBB1IP	54518	broad.mit.edu	37	10	26802553	26802553	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26802553G>A	uc001iss.2	+	8	1098	c.777G>A	c.(775-777)GAG>GAA	p.E259E	APBB1IP_uc009xks.1_Silent_p.E259E	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	259	Ras-associating.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						TATTTTTGGAGAAAGAGGAGA	0.313													40	113					0	0	1	0	0
APBB1IP	54518	broad.mit.edu	37	10	26822398	26822398	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26822398G>A	uc001iss.2	+	9	1165	c.844G>A	c.(844-846)GAA>AAA	p.E282K	APBB1IP_uc009xks.1_Missense_Mutation_p.E282K	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	282					blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						AGGAAAAAAAGAAAGCAAGGA	0.343													9	47					0	0	1	0	0
APBB1IP	54518	broad.mit.edu	37	10	26849116	26849116	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26849116G>A	uc001iss.2	+	12	1559	c.1238G>A	c.(1237-1239)GGA>GAA	p.G413E		NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	413	PH.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						TGGGTCATGGGAATACGGATA	0.498													20	93					0	0	1	0	0
PDSS1	23590	broad.mit.edu	37	10	26994270	26994270	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:26994270C>T	uc001isv.2	+	4	329	c.283C>T	c.(283-285)CCT>TCT	p.P95S	PDSS1_uc001isw.2_Missense_Mutation_p.P95S	NM_014317	NP_055132	Q5T2R2	DPS1_HUMAN	prenyl diphosphate synthase, subunit 1	95					isoprenoid biosynthetic process|ubiquinone biosynthetic process	mitochondrion	metal ion binding|protein heterodimerization activity				0						ATACACCGATCCTTTCAAACT	0.383													17	39					0	0	1	0	0
ANKRD26	22852	broad.mit.edu	37	10	27375502	27375502	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:27375502C>T	uc001ith.2	-	5	847	c.675G>A	c.(673-675)AGG>AGA	p.R225R	ANKRD26_uc009xku.1_Silent_p.R225R	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	225						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						GTTTAGGTATCCTTTCTTCTT	0.264													27	83					0	0	1	0	0
YME1L1	10730	broad.mit.edu	37	10	27411786	27411786	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:27411786G>A	uc001iti.2	-	12	1572	c.1390C>T	c.(1390-1392)CTT>TTT	p.L464F	YME1L1_uc001itj.2_Missense_Mutation_p.L407F|YME1L1_uc010qdl.1_Missense_Mutation_p.L374F|YME1L1_uc009xkv.2_Intron	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	464					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						ATTTCAGCAAGAAGTTGATTT	0.343													30	66					0	0	1	0	0
ACBD5	91452	broad.mit.edu	37	10	27499923	27499923	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:27499923G>A	uc010qdp.1	-	9	1215	c.1024C>T	c.(1024-1026)CGT>TGT	p.R342C	ACBD5_uc010qdm.1_Missense_Mutation_p.R340C|ACBD5_uc010qdn.1_Missense_Mutation_p.R233C|ACBD5_uc010qdo.1_Missense_Mutation_p.R165C|ACBD5_uc001ito.2_Missense_Mutation_p.R307C|ACBD5_uc001itp.2_Missense_Mutation_p.R233C|ACBD5_uc001itq.2_Missense_Mutation_p.R233C|ACBD5_uc001itr.1_Missense_Mutation_p.R131C	NM_145698	NP_663736	Q5T8D3	ACBD5_HUMAN	acyl-Coenzyme A binding domain containing 5	351					transport	integral to membrane|peroxisomal membrane	fatty-acyl-CoA binding				0						ATATCTTCACGAAATCCAGAA	0.418													67	169					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	27552006	27552006	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:27552006G>A	uc001itt.1	+	2		c.262G>A								Homo sapiens cDNA FLJ43247 fis, clone HEART2000611.																		CCCTCTAAATGAAGTGATATT	0.438													20	39					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	27577691	27577691	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:27577691G>A	uc001itt.1	+	4		c.581G>A								Homo sapiens cDNA FLJ43247 fis, clone HEART2000611.																		CCATCGTCAGGAAGCAAGTGC	0.403													8	51					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687295	27687295	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:27687295G>A	uc001itu.2	-	4	2350	c.2232C>T	c.(2230-2232)ATC>ATT	p.I744I		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	744					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GGGAAGAAATGATTTCATTTG	0.308													16	42					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27692272	27692272	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:27692272C>T	uc001itu.2	-	3	1344	c.1226G>A	c.(1225-1227)CGA>CAA	p.R409Q		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	409	SSD.				spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CATTTTGTTTCGTATGCAGTC	0.443													35	54					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702757	27702757	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:27702757G>A	uc001itu.2	-	1	541	c.423C>T	c.(421-423)TTC>TTT	p.F141F		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	141	Helical; (Potential).				spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GCGCCAGCAGGAAGATCCAGG	0.662													30	78					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27703020	27703021	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:27703020_27703021GG>AA	uc001itu.2	-	1	277_278	c.159_160CC>TT	c.(157-162)TCCCCC>TCTTCC	p.P54S		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	54					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GAGGGTTCGGGGGATTTCGGGG	0.693													35	82					0	0	1	0	0
MKX	283078	broad.mit.edu	37	10	28024255	28024255	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28024255G>A	uc001ity.3	-	4	622	c.397C>T	c.(397-399)CGA>TGA	p.R133*	MKX_uc001itx.3_Nonsense_Mutation_p.R133*	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	133					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCTGGCTGTCGAACGGTATTC	0.368													37	72					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28149675	28149675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28149675G>A	uc009xky.2	-	19	2998	c.2900C>T	c.(2899-2901)CCA>CTA	p.P967L	ARMC4_uc010qds.1_Missense_Mutation_p.P492L|ARMC4_uc010qdt.1_Missense_Mutation_p.P659L|ARMC4_uc001itz.2_Missense_Mutation_p.P967L	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	967	ARM 9.						binding			ovary(4)|skin(2)	6						ACGCACTAGTGGAGCCACTGC	0.478													27	66					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28229561	28229561	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28229561C>T	uc009xky.2	-	13	2015	c.1917G>A	c.(1915-1917)CGG>CGA	p.R639R	ARMC4_uc010qds.1_Silent_p.R164R|ARMC4_uc010qdt.1_Silent_p.R331R|ARMC4_uc001itz.2_Silent_p.R639R|ARMC4_uc010qdu.1_Silent_p.R331R	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	639	ARM 3.						binding			ovary(4)|skin(2)	6						TCTTCAGCAGCCGAGCCAACA	0.527													44	112					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28229733	28229733	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28229733A>G	uc009xky.2	-	13	1843	c.1745T>C	c.(1744-1746)GTT>GCT	p.V582A	ARMC4_uc010qds.1_Missense_Mutation_p.V107A|ARMC4_uc010qdt.1_Missense_Mutation_p.V274A|ARMC4_uc001itz.2_Missense_Mutation_p.V582A|ARMC4_uc010qdu.1_Missense_Mutation_p.V274A	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	582							binding			ovary(4)|skin(2)	6						TAGTAGAGCAACCTATAATAA	0.448													33	65					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28233854	28233854	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28233854G>A	uc009xky.2	-	11	1522	c.1424C>T	c.(1423-1425)TCA>TTA	p.S475L	ARMC4_uc010qds.1_5'UTR|ARMC4_uc010qdt.1_Missense_Mutation_p.S167L|ARMC4_uc001itz.2_Missense_Mutation_p.S475L|ARMC4_uc010qdu.1_Missense_Mutation_p.S167L	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	475							binding			ovary(4)|skin(2)	6						ATCCCTCATTGAACACAACGC	0.448													42	82					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28260212	28260212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28260212C>T	uc009xky.2	-	8	1065	c.967G>A	c.(967-969)GAA>AAA	p.E323K	ARMC4_uc010qds.1_Intron|ARMC4_uc010qdt.1_Missense_Mutation_p.E15K|ARMC4_uc001itz.2_Missense_Mutation_p.E323K|ARMC4_uc010qdu.1_Missense_Mutation_p.E15K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	323							binding			ovary(4)|skin(2)	6						TGATCCTTTTCCTTTTGCTGG	0.388													21	53					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28272835	28272835	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28272835C>T	uc009xky.2	-	6	854	c.756G>A	c.(754-756)GTG>GTA	p.V252V	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Silent_p.V252V|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	252							binding			ovary(4)|skin(2)	6						CGTGAGGTTTCACCAGCACAT	0.393													27	57					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28273125	28273125	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28273125C>T	uc009xky.2	-	5	768	c.670G>A	c.(670-672)GAA>AAA	p.E224K	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.E224K|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	224							binding			ovary(4)|skin(2)	6						GAGGTATATTCAATAGATTCC	0.328													45	106					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28273189	28273189	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28273189C>T	uc009xky.2	-	5	704	c.606G>A	c.(604-606)AAG>AAA	p.K202K	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Silent_p.K202K|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	202							binding			ovary(4)|skin(2)	6						CTATATCCTTCTTCACCGTCA	0.338													54	119					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28273976	28273976	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28273976G>A	uc009xky.2	-	4	645	c.547C>T	c.(547-549)CTC>TTC	p.L183F	ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.L183F	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	183							binding			ovary(4)|skin(2)	6						GAATGATTGAGGAGGTGCAGA	0.264													5	22					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28284008	28284008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28284008C>T	uc009xky.2	-	2	162	c.64G>A	c.(64-66)GAA>AAA	p.E22K	ARMC4_uc001itz.2_Missense_Mutation_p.E22K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	22							binding			ovary(4)|skin(2)	6						GGGGTGATTTCGAGGATTCCA	0.453													19	53					0	0	1	0	0
MPP7	143098	broad.mit.edu	37	10	28343065	28343065	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28343065C>T	uc001iua.1	-	19	2064	c.1660G>A	c.(1660-1662)GAG>AAG	p.E554K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E554K|MPP7_uc009xla.2_Missense_Mutation_p.E554K	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	554	Guanylate kinase-like.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						GTTTTGAGCTCATTGAATGCC	0.328													18	38					0	0	1	0	0
MPP7	143098	broad.mit.edu	37	10	28348673	28348673	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28348673C>T	uc001iua.1	-	16	1609	c.1205_splice	c.e16-1	p.H402_splice	MPP7_uc009xkz.1_Splice_Site|MPP7_uc001iub.1_Splice_Site_p.H402_splice|MPP7_uc009xla.2_Splice_Site_p.H402_splice|MPP7_uc010qdv.1_Splice_Site	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7						establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						CTGGTGGTATCTATGATTTAA	0.338													23	71					0	0	1	0	0
MPP7	143098	broad.mit.edu	37	10	28378638	28378638	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28378638C>T	uc001iua.1	-	14	1489	c.1085G>A	c.(1084-1086)CGA>CAA	p.R362Q	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.R362Q|MPP7_uc009xla.2_Missense_Mutation_p.R362Q|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	362					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						ATTAGTTTGTCGCCGATACGG	0.388													73	215					0	0	1	0	0
MPP7	143098	broad.mit.edu	37	10	28409123	28409123	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:28409123C>T	uc001iua.1	-	12	1291	c.887G>A	c.(886-888)AGG>AAG	p.R296K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.R296K|MPP7_uc009xla.2_Missense_Mutation_p.R296K|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	296	SH3.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity	p.R296S(1)		ovary(1)	1						AGCAGCTCACCTTTCCTGGAA	0.443													15	65					0	0	1	0	0
LYZL1	84569	broad.mit.edu	37	10	29580895	29580895	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:29580895G>A	uc001iul.2	+	2	294	c.237G>A	c.(235-237)AGG>AGA	p.R79R		NM_032517	NP_115906	Q6UWQ5	LYZL1_HUMAN	lysozyme-like 1	33					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Breast(68;0.203)				TATTCTCGAGGGCTGGCCTGG	0.522													26	23					0	0	1	0	0
SVIL	6840	broad.mit.edu	37	10	29782300	29782300	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:29782300C>T	uc001iut.1	-	21	4615	c.3862G>A	c.(3862-3864)GTG>ATG	p.V1288M	SVIL_uc010qdw.1_Missense_Mutation_p.V202M|SVIL_uc001iuu.1_Missense_Mutation_p.V862M|SVIL_uc009xlc.2_Missense_Mutation_p.V80M	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1288					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				ACAGTGAGCACCGTTTCGTGC	0.398													16	32					0	0	1	0	0
SVIL	6840	broad.mit.edu	37	10	29821054	29821054	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:29821054C>T	uc001iut.1	-	9	2639	c.1886G>A	c.(1885-1887)GGT>GAT	p.G629D	SVIL_uc001iuu.1_Intron	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	629					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				CCGTTCCACACCGGTGGGCAA	0.488													33	79					0	0	1	0	0
SVIL	6840	broad.mit.edu	37	10	29840139	29840139	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:29840139G>A	uc001iut.1	-	6	967	c.214C>T	c.(214-216)CGA>TGA	p.R72*	SVIL_uc001iuu.1_Nonsense_Mutation_p.R72*|SVIL_uc009xld.1_Nonsense_Mutation_p.R72*	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	72	Interaction with MYLK (By similarity).				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TATTTGGATCGAGTTTGCTTT	0.473													34	65					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316036	30316036	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30316036G>A	uc001iux.2	-	2	3100	c.3041C>T	c.(3040-3042)CCA>CTA	p.P1014L	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.P876L|KIAA1462_uc009xle.1_Missense_Mutation_p.P1014L	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1014										ovary(4)	4						CGCTTCACTTGGTTTCACAGA	0.567													58	119					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316279	30316279	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30316279C>T	uc001iux.2	-	2	2857	c.2798G>A	c.(2797-2799)GGC>GAC	p.G933D	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.G795D|KIAA1462_uc009xle.1_Missense_Mutation_p.G933D	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	933										ovary(4)	4						GCGAAAGCGGCCCGGGGATGG	0.607													10	72					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316938	30316938	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30316938C>T	uc001iux.2	-	2	2198	c.2139G>A	c.(2137-2139)CCG>CCA	p.P713P	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.P575P|KIAA1462_uc009xle.1_Silent_p.P713P	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	713										ovary(4)	4						CTGCACGACTCGGCCCTCCCA	0.572													19	45					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316985	30316985	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30316985C>T	uc001iux.2	-	2	2151	c.2092G>A	c.(2092-2094)GAG>AAG	p.E698K	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.E560K|KIAA1462_uc009xle.1_Missense_Mutation_p.E698K	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	698										ovary(4)	4						CTTTGGGGCTCCTCGGAGAAA	0.547													14	46					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317513	30317513	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30317513C>T	uc001iux.2	-	2	1623	c.1564G>A	c.(1564-1566)GCA>ACA	p.A522T	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.A384T|KIAA1462_uc009xle.1_Missense_Mutation_p.A522T	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	522										ovary(4)	4						TGTCCCCTTGCCACACAGCGG	0.642													44	130					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317795	30317795	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30317795C>T	uc001iux.2	-	2	1341	c.1282G>A	c.(1282-1284)GAT>AAT	p.D428N	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.D290N|KIAA1462_uc009xle.1_Missense_Mutation_p.D428N	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	428										ovary(4)	4						AACCGTGGATCATCAAAGGGA	0.507													36	110					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318780	30318780	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30318780G>A	uc001iux.2	-	2	356	c.297C>T	c.(295-297)CCC>CCT	p.P99P	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_5'UTR|KIAA1462_uc009xle.1_Silent_p.P99P	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	99										ovary(4)	4						ATGCTGAGGGGGGTTGATTAC	0.512													6	33					0	0	1	0	0
MTPAP	55149	broad.mit.edu	37	10	30602580	30602580	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30602580G>A	uc001iva.3	-	9	1770	c.1707C>T	c.(1705-1707)TTC>TTT	p.F569F	MTPAP_uc001ivb.3_Silent_p.F699F	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	569					cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						TGGTTTTTGTGAAATTTTCTG	0.363													55	132					0	0	1	0	0
MTPAP	55149	broad.mit.edu	37	10	30605092	30605092	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30605092G>A	uc001iva.3	-	7	1330	c.1267C>T	c.(1267-1269)CGT>TGT	p.R423C	MTPAP_uc001ivb.3_Missense_Mutation_p.R553C	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	423					cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						CTCAAGTCACGAACAAATGTG	0.313													12	39					0	0	1	0	0
MTPAP	55149	broad.mit.edu	37	10	30653799	30653799	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30653799G>A	uc001ivb.3	-	9	1755	c.383C>T	c.(382-384)TCC>TTC	p.S128F	LOC729668_uc001ivd.2_RNA|uc001ive.1_5'Flank	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	Error:Variant_position_missing_in_Q9NVV4_after_alignment					cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						CACCTGAAGGGAGGGGTGCTC	0.517													3	13					0	0	1	0	0
LYZL2	119180	broad.mit.edu	37	10	30918621	30918621	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:30918621G>C	uc001ivk.2	-	1	27	c.14C>G	c.(13-15)CCC>CGC	p.P5R		NM_183058	NP_898881	Q7Z4W2	LYZL2_HUMAN	lysozyme-like 2	Error:Variant_position_missing_in_Q7Z4W2_after_alignment					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Prostate(175;0.151)				GCAGCTCAGGGGAGCGTCCTG	0.502													8	44					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	31001487	31001487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:31001487G>A	uc010qdx.1	+	9	1471	c.929G>A	c.(928-930)GGA>GAA	p.G310E						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		GTAACTACAGGAAAAAAATCT	0.443													17	40					0	0	1	0	0
ZNF438	220929	broad.mit.edu	37	10	31139024	31139024	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:31139024G>A	uc010qdz.1	-	7	745	c.310C>T	c.(310-312)CAG>TAG	p.Q104*	ZNF438_uc001ivn.2_Nonsense_Mutation_p.Q55*|ZNF438_uc010qdy.1_Nonsense_Mutation_p.Q94*|ZNF438_uc001ivo.3_Intron|ZNF438_uc009xlg.2_Nonsense_Mutation_p.Q104*|ZNF438_uc001ivp.3_Nonsense_Mutation_p.Q94*|ZNF438_uc010qea.1_Nonsense_Mutation_p.Q104*|ZNF438_uc010qeb.1_Nonsense_Mutation_p.Q104*|ZNF438_uc010qec.1_Intron	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	104					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				TGAATTGGCTGAGCTGAGGCA	0.488													32	127					0	0	1	0	0
ZEB1	6935	broad.mit.edu	37	10	31750138	31750138	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:31750138G>A	uc001ivs.3	+	2	294	c.231G>A	c.(229-231)GGG>GGA	p.G77G	ZEB1_uc001ivr.3_5'UTR|ZEB1_uc010qee.1_5'UTR|ZEB1_uc010qef.1_5'UTR|ZEB1_uc009xlh.1_RNA|ZEB1_uc009xli.1_RNA|ZEB1_uc009xlj.1_Silent_p.G77G|ZEB1_uc010qeg.1_Intron|ZEB1_uc009xlk.1_5'UTR|ZEB1_uc001ivt.3_5'UTR|ZEB1_uc001ivu.3_Silent_p.G77G|ZEB1_uc001ivv.3_Silent_p.G77G|ZEB1_uc010qeh.1_Intron|ZEB1_uc009xll.2_RNA|ZEB1_uc009xlm.1_RNA|ZEB1_uc009xln.1_RNA|ZEB1_uc009xlo.1_Silent_p.G60G|ZEB1_uc009xlp.2_Silent_p.G60G	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	77					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				AAAGAGAAGGGAATGCTAAGA	0.388													14	39					0	0	1	0	0
ZEB1	6935	broad.mit.edu	37	10	31810494	31810494	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:31810494G>A	uc001ivs.3	+	7	2294	c.2231G>A	c.(2230-2232)GGA>GAA	p.G744E	ZEB1_uc001ivr.3_Missense_Mutation_p.G526E|ZEB1_uc010qee.1_Missense_Mutation_p.G526E|ZEB1_uc010qef.1_Missense_Mutation_p.G526E|ZEB1_uc009xlj.1_Missense_Mutation_p.G670E|ZEB1_uc010qeg.1_Missense_Mutation_p.G603E|ZEB1_uc009xlk.1_Missense_Mutation_p.G526E|ZEB1_uc001ivt.3_Missense_Mutation_p.G526E|ZEB1_uc001ivu.3_Missense_Mutation_p.G745E|ZEB1_uc001ivv.3_Missense_Mutation_p.G724E|ZEB1_uc010qeh.1_Missense_Mutation_p.G677E|ZEB1_uc009xlo.1_Missense_Mutation_p.G727E|ZEB1_uc009xlp.2_Missense_Mutation_p.G728E	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	744					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				AAGCAACAGGGAGAATTATTA	0.428													22	93					0	0	1	0	0
ZEB1	6935	broad.mit.edu	37	10	31810843	31810843	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:31810843G>A	uc001ivs.3	+	7	2643	c.2580G>A	c.(2578-2580)GTG>GTA	p.V860V	ZEB1_uc001ivr.3_Silent_p.V642V|ZEB1_uc010qee.1_Silent_p.V642V|ZEB1_uc010qef.1_Silent_p.V642V|ZEB1_uc009xlj.1_Silent_p.V786V|ZEB1_uc010qeg.1_Silent_p.V719V|ZEB1_uc009xlk.1_Silent_p.V642V|ZEB1_uc001ivt.3_Silent_p.V642V|ZEB1_uc001ivu.3_Silent_p.V861V|ZEB1_uc001ivv.3_Silent_p.V840V|ZEB1_uc010qeh.1_Silent_p.V793V|ZEB1_uc009xlo.1_Silent_p.V843V|ZEB1_uc009xlp.2_Silent_p.V844V	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	860					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				CCTTGAAAGTGATCCAGCCAA	0.418													23	53					0	0	1	0	0
ZEB1	6935	broad.mit.edu	37	10	31815971	31815971	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:31815971G>A	uc001ivs.3	+	9	3217	c.3154G>A	c.(3154-3156)GAA>AAA	p.E1052K	ZEB1_uc001ivr.3_Missense_Mutation_p.E834K|ZEB1_uc010qee.1_Missense_Mutation_p.E834K|ZEB1_uc010qef.1_Missense_Mutation_p.E834K|ZEB1_uc001ivt.3_Missense_Mutation_p.E834K|ZEB1_uc001ivu.3_Missense_Mutation_p.E1053K|ZEB1_uc001ivv.3_Missense_Mutation_p.E1032K|ZEB1_uc010qeh.1_Missense_Mutation_p.E985K|ZEB1_uc009xlp.2_Missense_Mutation_p.E1036K	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	1052	Glu-rich (acidic).				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				agaattgcaggaagaaaaaga	0.144													5	15					0	0	1	0	0
ZEB1	6935	broad.mit.edu	37	10	31816128	31816128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:31816128G>A	uc001ivs.3	+	9	3374	c.3311G>A	c.(3310-3312)AGC>AAC	p.S1104N	ZEB1_uc001ivr.3_Missense_Mutation_p.S886N|ZEB1_uc010qee.1_Missense_Mutation_p.S886N|ZEB1_uc010qef.1_Missense_Mutation_p.S886N|ZEB1_uc001ivt.3_Missense_Mutation_p.S886N|ZEB1_uc001ivu.3_Missense_Mutation_p.S1105N|ZEB1_uc001ivv.3_Missense_Mutation_p.S1084N|ZEB1_uc010qeh.1_Missense_Mutation_p.S1037N|ZEB1_uc009xlp.2_Missense_Mutation_p.S1088N	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	1104	Glu-rich (acidic).				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				CAAGCAAGCAGCTTAGGACAA	0.289													9	20					0	0	1	0	0
KIF5B	3799	broad.mit.edu	37	10	32320161	32320161	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:32320161A>G	uc001iwe.3	-	14	1891	c.1421T>C	c.(1420-1422)CTG>CCG	p.L474P		NM_004521	NP_004512	P33176	KINH_HUMAN	kinesin family member 5B	474					stress granule disassembly|vesicle transport along microtubule	kinesin complex|microtubule|perinuclear region of cytoplasm|vesicle	ATP binding|microtubule binding|microtubule motor activity		KIF5B/ALK(4)	lung(4)|ovary(1)	5		Prostate(175;0.0137)				AAGGCGATTCAGCTCAGCTTG	0.373													13	50					0	0	1	0	0
C10orf68	79741	broad.mit.edu	37	10	33143334	33143334	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:33143334C>T	uc001iwn.3	+	21	2230	c.1757C>T	c.(1756-1758)TCG>TTG	p.S586L	C10orf68_uc001iwl.1_Missense_Mutation_p.S545L|C10orf68_uc001iwm.1_Missense_Mutation_p.S590L|C10orf68_uc010qei.1_Missense_Mutation_p.S562L|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	586										skin(2)|ovary(1)	3						TTAGGGCATTCGAAAGTTGTT	0.279													13	38					0	0	1	0	0
NRP1	8829	broad.mit.edu	37	10	33475234	33475234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:33475234C>T	uc001iwx.3	-	14	2768	c.2245G>A	c.(2245-2247)GAT>AAT	p.D749N	NRP1_uc001iwv.3_Missense_Mutation_p.D749N|NRP1_uc009xlz.2_Missense_Mutation_p.D743N|NRP1_uc001iww.3_Missense_Mutation_p.D561N|NRP1_uc001iwy.3_Missense_Mutation_p.D742N	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	749	Extracellular (Potential).|MAM.			D -> H (in Ref. 2; AAC12921).	axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	ACCAGCTGATCGTACTCCTCT	0.542													20	50					0	0	1	0	0
NRP1	8829	broad.mit.edu	37	10	33502596	33502596	+	Silent	SNP	G	A	A	rs144422380		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:33502596G>A	uc001iwx.3	-	9	1855	c.1332C>T	c.(1330-1332)GAC>GAT	p.D444D	NRP1_uc001iwv.3_Silent_p.D444D|NRP1_uc009xlz.2_Silent_p.D444D|NRP1_uc001iww.3_Silent_p.D263D|NRP1_uc001iwy.3_Silent_p.D444D|NRP1_uc001iwz.2_Silent_p.D444D|NRP1_uc001ixa.2_Silent_p.D444D|NRP1_uc001ixb.1_Silent_p.D444D|NRP1_uc001ixc.1_Silent_p.D444D	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	444	Extracellular (Potential).|F5/8 type C 2.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TGATCTGGGAGTCAGAAATAA	0.493													8	122					0	0	1	0	0
NRP1	8829	broad.mit.edu	37	10	33552743	33552743	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:33552743G>A	uc001iwx.3	-	4	1012	c.489C>T	c.(487-489)TTC>TTT	p.F163F	NRP1_uc001iwv.3_Silent_p.F163F|NRP1_uc009xlz.2_Silent_p.F163F|NRP1_uc001iww.3_5'UTR|NRP1_uc001iwy.3_Silent_p.F163F|NRP1_uc001iwz.2_Silent_p.F163F|NRP1_uc001ixa.2_Silent_p.F163F|NRP1_uc001ixb.1_Silent_p.F163F|NRP1_uc001ixc.1_Silent_p.F163F	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	163	Extracellular (Potential).|CUB 2.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	ATTTTTCAGGGAATCCGGGGG	0.423													67	226					0	0	1	0	0
NRP1	8829	broad.mit.edu	37	10	33559689	33559689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:33559689G>A	uc001iwx.3	-	3	867	c.344C>T	c.(343-345)TCA>TTA	p.S115L	NRP1_uc001iwv.3_Missense_Mutation_p.S115L|NRP1_uc009xlz.2_Missense_Mutation_p.S115L|NRP1_uc001iww.3_Intron|NRP1_uc001iwy.3_Missense_Mutation_p.S115L|NRP1_uc001iwz.2_Missense_Mutation_p.S115L|NRP1_uc001ixa.2_Missense_Mutation_p.S115L|NRP1_uc001ixb.1_Missense_Mutation_p.S115L|NRP1_uc001ixc.1_Missense_Mutation_p.S115L	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	115	CUB 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	AAATGGCCCTGAAGACACAAC	0.403													24	64					0	0	1	0	0
PARD3	56288	broad.mit.edu	37	10	34400213	34400213	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:34400213G>A	uc010qej.1	-	25	3955	c.3955C>T	c.(3955-3957)CCC>TCC	p.P1319S	PARD3_uc010qek.1_Missense_Mutation_p.P1316S|PARD3_uc010qel.1_Missense_Mutation_p.P1282S|PARD3_uc010qem.1_Missense_Mutation_p.P1303S|PARD3_uc010qen.1_Missense_Mutation_p.P1273S|PARD3_uc010qeo.1_Missense_Mutation_p.P1236S|PARD3_uc010qep.1_Missense_Mutation_p.P1229S|PARD3_uc010qeq.1_Missense_Mutation_p.P1207S|uc001ixe.1_5'Flank	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	1319					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				GCGTAACTGGGGTCCTGGACT	0.597													15	61					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430806	37430806	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37430806G>A	uc001iza.1	+	7	912	c.813G>A	c.(811-813)GAG>GAA	p.E271E		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	327						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CACCTGATGAGGCTGCATCCT	0.473													17	55					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37433933	37433933	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37433933C>T	uc001iza.1	+	8	1335	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	468						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ATCAGAGGTTCCCATCAGAAT	0.254													45	89					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37441019	37441019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37441019G>A	uc001iza.1	+	12	1608	c.1509G>A	c.(1507-1509)AAG>AAA	p.K503K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	559						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CCAAACAAAAGGACTATGAAG	0.294													23	89					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37447489	37447489	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37447489G>A	uc001iza.1	+	15	1806	c.1707G>A	c.(1705-1707)TTG>TTA	p.L569L		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	625						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CCTTAGAATTGAAGGACATGC	0.289													30	97					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37451769	37451769	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37451769G>A	uc001iza.1	+	17	1926	c.1827G>A	c.(1825-1827)TTG>TTA	p.L609L		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	665				L -> W (in Ref. 2; AAK27325).		nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AACAAACATTGAGAGCAGGTA	0.328													35	72					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37454063	37454063	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37454063G>A	uc001iza.1	+	18	1975	c.1876G>A	c.(1876-1878)GAA>AAA	p.E626K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	682						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GGACTATGAAGAAAATTCTTG	0.289													41	65					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37482128	37482128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37482128G>A	uc001iza.1	+	27	2487	c.2388G>A	c.(2386-2388)ATG>ATA	p.M796I		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	852						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CCTGCAGAATGAAAGTTTCTA	0.269													44	97					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37486340	37486341	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37486340_37486341CC>TT	uc001iza.1	+	29	2579_2580	c.2480_2481CC>TT	c.(2479-2481)GCC>GTT	p.A827V		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	883						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ATTTAGCCTGCCATTGAAATGC	0.307													36	103					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37505165	37505165	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37505165G>A	uc001iza.1	+	32	2857	c.2758G>A	c.(2758-2760)GAA>AAA	p.E920K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	976						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAGAGCAAGGGAACTTCAAAA	0.323													21	69					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37505206	37505206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37505206G>A	uc001iza.1	+	32	2898	c.2799G>A	c.(2797-2799)ATG>ATA	p.M933I		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	989						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CAGGAAAAATGGAACAAATGA	0.333													23	69					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37505221	37505221	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37505221G>A	uc001iza.1	+	32	2913	c.2814G>A	c.(2812-2814)AAG>AAA	p.K938K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	994						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAATGAAAAAGAAGTTTTGTG	0.338													13	75					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37506752	37506753	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37506752_37506753GG>AA	uc001iza.1	+	33	3144_3145	c.3045_3046GG>AA	c.(3043-3048)CAGGCT>CAAACT	p.A1016T		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1072	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AACTTGAACAGGCTCTCAGAAT	0.292													33	33					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508103	37508103	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37508103G>A	uc001iza.1	+	34	3394	c.3295G>A	c.(3295-3297)GAA>AAA	p.E1099K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1155	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACTGAAAGAGGAATCATTAAC	0.338													69	167					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508120	37508120	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37508120G>A	uc001iza.1	+	34	3411	c.3312G>A	c.(3310-3312)AGG>AGA	p.R1104R		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1160	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TAACTAAAAGGGCATCTCAAT	0.333													51	183					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508190	37508190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37508190G>A	uc001iza.1	+	34	3481	c.3382G>A	c.(3382-3384)GAA>AAA	p.E1128K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1184	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TAAATTGAAGGAAAAACAAGA	0.368													10	146					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508413	37508413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:37508413G>A	uc001iza.1	+	34	3704	c.3605G>A	c.(3604-3606)AGG>AAG	p.R1202K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1258						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GAAGCTCAAAGGAAATCCAAA	0.363													13	54					0	0	1	0	0
ZNF248	57209	broad.mit.edu	37	10	38121119	38121119	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:38121119G>A	uc001izd.1	-	6	1663	c.1164C>T	c.(1162-1164)ACC>ACT	p.T388T	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Silent_p.T388T	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	388	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCTCCCAGAAGGTTTTCCCAC	0.443													32	140					0	0	1	0	0
ZNF248	57209	broad.mit.edu	37	10	38127004	38127004	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:38127004G>A	uc001izd.1	-	4	550	c.51C>T	c.(49-51)TTC>TTT	p.F17F	ZNF248_uc009xmc.2_Silent_p.F17F|ZNF248_uc001izb.2_RNA|ZNF248_uc001izc.2_Silent_p.F17F|ZNF248_uc010qeu.1_Silent_p.F17F	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	17	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTTCCTGAGTGAAGTCCACAC	0.383													38	130					0	0	1	0	0
ZNF33A	7581	broad.mit.edu	37	10	38345344	38345344	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:38345344C>T	uc001izh.2	+	5	2467	c.2289C>T	c.(2287-2289)CTC>CTT	p.L763L	ZNF33A_uc001izg.2_Silent_p.L764L|ZNF33A_uc010qev.1_Silent_p.L770L|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	763	C2H2-type 16.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						AGTCAAATCTCATTGTACATC	0.383													30	90					0	0	1	0	0
ZNF33A	7581	broad.mit.edu	37	10	38353019	38353019	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:38353019C>T	uc001izi.1	+	6	569	c.391C>T	c.(391-393)CCT>TCT	p.P131S				Q06730	ZN33A_HUMAN	SubName: Full=ZNF33B protein;	58	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						CTCCCAGGCCCCTGAGATGCT	0.512													44	95					0	0	1	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38652442	38652442	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:38652442C>T	uc010qex.1	+	4	432	c.357C>T	c.(355-357)TTC>TTT	p.F119F	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Silent_p.F117F					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TTCATATGTTCTCCACAGCTG	0.428													15	39					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	42928724	42928724	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:42928724G>A	uc001izx.2	-	4		c.777C>T								Homo sapiens cyclin Y-like 2, mRNA (cDNA clone IMAGE:4704933), with apparent retained intron.																		ATTGTAAGATGAGGCTGGCTG	0.393													29	58					0	0	1	0	0
BMS1	9790	broad.mit.edu	37	10	43279991	43279991	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:43279991C>T	uc001jaj.2	+	2	507	c.149C>T	c.(148-150)GCT>GTT	p.A50V		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	50					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						GTTCAGTCTGCTGTGCGGATG	0.468													33	123					0	0	1	0	0
BMS1	9790	broad.mit.edu	37	10	43285837	43285837	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:43285837C>T	uc001jaj.2	+	5	872	c.514C>T	c.(514-516)CAA>TAA	p.Q172*		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	172					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						AAACATCTGTCAAGTACATGG	0.378													40	136					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43596087	43596087	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:43596087G>A	uc001jal.2	+	2	444	c.254G>A	c.(253-255)TGG>TAG	p.W85*	RET_uc001jak.1_Nonsense_Mutation_p.W85*	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	85	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	GAGAACAACTGGATCTGCATC	0.637		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				6	29					0	0	1	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43678790	43678790	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:43678790C>T	uc001jan.2	+	8	1764	c.1429C>T	c.(1429-1431)CCG>TCG	p.P477S		NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	477	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						GATTCGGACTCCGGTTCCTGG	0.478													78	165					0	0	1	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43678849	43678849	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:43678849C>T	uc001jan.2	+	8	1823	c.1488C>T	c.(1486-1488)CCC>CCT	p.P496P		NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	496	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						AGCTGACCCCCGAGCAGTACC	0.517													22	212					0	0	1	0	0
RASGEF1A	221002	broad.mit.edu	37	10	43694429	43694429	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:43694429C>T	uc001jap.1	-	9	1065	c.984G>A	c.(982-984)CTG>CTA	p.L328L	RASGEF1A_uc001jao.1_Silent_p.L336L	NM_145313	NP_660356	Q8N9B8	RGF1A_HUMAN	RasGEF domain family, member 1A	328	Ras-GEF.				cell migration|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						AAGTTTTCTTCAGCCTTGCCA	0.622													49	87					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44052332	44052332	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44052332C>T	uc001jaw.3	-	2	1849	c.1196G>A	c.(1195-1197)GGA>GAA	p.G399E	ZNF239_uc001jax.3_Missense_Mutation_p.G399E|ZNF239_uc009xmj.2_Missense_Mutation_p.G399E|ZNF239_uc009xmk.2_Missense_Mutation_p.G399E	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	399					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						GGGCTTCTCTCCAGTGTGGAC	0.522													25	51					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44052360	44052360	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44052360G>A	uc001jaw.3	-	2	1821	c.1168C>T	c.(1168-1170)CTT>TTT	p.L390F	ZNF239_uc001jax.3_Missense_Mutation_p.L390F|ZNF239_uc009xmj.2_Missense_Mutation_p.L390F|ZNF239_uc009xmk.2_Missense_Mutation_p.L390F	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	390	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						TGGATGCGAAGATCCGAGCTC	0.527													8	78					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44052376	44052376	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44052376G>A	uc001jaw.3	-	2	1805	c.1152C>T	c.(1150-1152)TTC>TTT	p.F384F	ZNF239_uc001jax.3_Silent_p.F384F|ZNF239_uc009xmj.2_Silent_p.F384F|ZNF239_uc009xmk.2_Silent_p.F384F	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	384	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						AGCTCTGGCTGAAACCCTTCC	0.527													24	68					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44052906	44052906	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44052906C>T	uc001jaw.3	-	2	1275	c.622G>A	c.(622-624)GAA>AAA	p.E208K	ZNF239_uc001jax.3_Missense_Mutation_p.E208K|ZNF239_uc009xmj.2_Missense_Mutation_p.E208K|ZNF239_uc009xmk.2_Missense_Mutation_p.E208K	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	208	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						TGACTACATTCGTATTGTTTC	0.423													27	73					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44053363	44053363	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44053363G>A	uc001jaw.3	-	2	818	c.165C>T	c.(163-165)TTC>TTT	p.F55F	ZNF239_uc001jax.3_Silent_p.F55F|ZNF239_uc009xmj.2_Silent_p.F55F|ZNF239_uc009xmk.2_Silent_p.F55F	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	55					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						CAATGTTTTCGAAACAACCAC	0.413													46	106					0	0	1	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285233	44285233	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44285233G>A	uc010qfe.1	-	1	633	c.603C>T	c.(601-603)GCC>GCT	p.A201A		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						GTTTAGCAAGGGCCTTTTTCA	0.393													11	56					0	0	1	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285350	44285350	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44285350C>T	uc010qfe.1	-	1	516	c.486G>A	c.(484-486)CAG>CAA	p.Q162Q		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						TTTTTCCACTCTGCCTGTCTT	0.333													31	69					0	0	1	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285574	44285574	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44285574C>T	uc010qfe.1	-	1	292	c.262G>A	c.(262-264)GAG>AAG	p.E88K		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						GCATCCACCTCTGTAACACAA	0.478													30	106					0	0	1	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285653	44285653	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44285653G>A	uc010qfe.1	-	1	213	c.183C>T	c.(181-183)CTC>CTT	p.L61L		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						GACAATCTGTGAGTGTGCCCC	0.433													38	101					0	0	1	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285806	44285806	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:44285806G>A	uc010qfe.1	-	1	60	c.30C>T	c.(28-30)CCC>CCT	p.P10P		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						AGTCGGGCTGGGGGCAACCAG	0.572													4	34					0	0	1	0	0
RASSF4	83937	broad.mit.edu	37	10	45478097	45478097	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45478097G>A	uc001jbo.2	+	4	401	c.267G>A	c.(265-267)CGG>CGA	p.R89R	RASSF4_uc001jbp.2_Silent_p.R120R|RASSF4_uc009xmn.2_Silent_p.R19R|RASSF4_uc001jbq.2_Missense_Mutation_p.G17D|RASSF4_uc001jbt.2_Silent_p.R19R	NM_032023	NP_114412	Q9H2L5	RASF4_HUMAN	Ras association domain family 4	89					cell cycle|signal transduction		protein binding			large_intestine(1)	1						TGCCCAGACGGCCTAGCTGCC	0.652													7	29					0	0	1	0	0
RASSF4	83937	broad.mit.edu	37	10	45484726	45484726	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45484726C>T	uc001jbo.2	+	7	670	c.536C>T	c.(535-537)TCC>TTC	p.S179F	RASSF4_uc001jbp.2_Missense_Mutation_p.S210F|RASSF4_uc009xmn.2_Missense_Mutation_p.S109F|RASSF4_uc001jbq.2_Missense_Mutation_p.S76F|RASSF4_uc001jbt.2_Missense_Mutation_p.S136F	NM_032023	NP_114412	Q9H2L5	RASF4_HUMAN	Ras association domain family 4	179	Ras-associating.				cell cycle|signal transduction		protein binding			large_intestine(1)	1						GTACAGACCTCCGTGTTTACT	0.547													14	37					0	0	1	0	0
RASSF4	83937	broad.mit.edu	37	10	45484823	45484823	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45484823G>A	uc001jbo.2	+	7	767	c.633G>A	c.(631-633)AGG>AGA	p.R211R	RASSF4_uc001jbp.2_Silent_p.R242R|RASSF4_uc009xmn.2_Silent_p.R141R|RASSF4_uc001jbq.2_Silent_p.R108R|RASSF4_uc001jbt.2_Silent_p.R168R	NM_032023	NP_114412	Q9H2L5	RASF4_HUMAN	Ras association domain family 4	211	Ras-associating.				cell cycle|signal transduction		protein binding			large_intestine(1)	1						ACAAATTTAGGGTAAGCCTGG	0.577													10	21					0	0	1	0	0
OR13A1	79290	broad.mit.edu	37	10	45799175	45799175	+	Silent	SNP	G	A	A	rs146049499		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45799175G>A	uc001jcc.1	-	4	1005	c.696C>T	c.(694-696)ACC>ACT	p.T232T	OR13A1_uc001jcd.1_Silent_p.T228T	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	232	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGACGCGATGGTCATCAGGA	0.572													26	82					0	0	1	0	0
OR13A1	79290	broad.mit.edu	37	10	45799190	45799190	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45799190C>T	uc001jcc.1	-	4	990	c.681G>A	c.(679-681)GTG>GTA	p.V227V	OR13A1_uc001jcd.1_Silent_p.V223V	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	227	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCAGGAAGTTCACTATGCCGT	0.552													20	78					0	0	1	0	0
OR13A1	79290	broad.mit.edu	37	10	45799331	45799331	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45799331C>T	uc001jcc.1	-	4	849	c.540G>A	c.(538-540)CTG>CTA	p.L180L	OR13A1_uc001jcd.1_Silent_p.L176L	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCGCAGCATCAGCCCCGTGT	0.597													27	58					0	0	1	0	0
OR13A1	79290	broad.mit.edu	37	10	45799376	45799376	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45799376G>A	uc001jcc.1	-	4	804	c.495C>T	c.(493-495)GCC>GCT	p.A165A	OR13A1_uc001jcd.1_Silent_p.A161A	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	165	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCAGCCACACGGCTGTGGCCA	0.597													14	54					0	0	1	0	0
ALOX5	240	broad.mit.edu	37	10	45877960	45877960	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45877960G>A	uc001jce.2	+	2	279	c.180G>A	c.(178-180)GAG>GAA	p.E60E	ALOX5_uc009xmt.2_Silent_p.E60E|ALOX5_uc010qfg.1_Silent_p.E60E	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	60	PLAT.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CTGTGGACGAGGAACTGGGCG	0.512													18	48					0	0	1	0	0
ALOX5	240	broad.mit.edu	37	10	45878105	45878105	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45878105G>A	uc001jce.2	+	2	424	c.325G>A	c.(325-327)GAG>AAG	p.E109K	ALOX5_uc009xmt.2_Missense_Mutation_p.E109K|ALOX5_uc010qfg.1_Missense_Mutation_p.E109K	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	109	PLAT.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CGGCGATGTCGAGGTTGTCCT	0.592													3	11					0	0	1	0	0
ALOX5	240	broad.mit.edu	37	10	45936027	45936027	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45936027G>A	uc001jce.2	+	8	1230	c.1131G>A	c.(1129-1131)GAG>GAA	p.E377E	ALOX5_uc009xmt.2_Silent_p.E377E|ALOX5_uc010qfg.1_Silent_p.E377E	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	377	Lipoxygenase.			E->Q: No activity.	hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	TGGTGTCTGAGGTTTTTGGCA	0.542													17	38					0	0	1	0	0
MARCH8	220972	broad.mit.edu	37	10	45953750	45953750	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:45953750G>A	uc001jci.1	-	7	1052	c.813C>T	c.(811-813)TCC>TCT	p.S271S	MARCH8_uc001jch.2_Silent_p.S553S|MARCH8_uc001jcj.1_Silent_p.S271S|MARCH8_uc001jck.1_Silent_p.S271S|uc001jcf.2_5'Flank|MARCH8_uc001jcg.1_Silent_p.S140S	NM_001002266	NP_001002266	Q5T0T0	MARH8_HUMAN	cellular modulator of immune recognition isoform	271						cytoplasmic vesicle membrane|early endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding				0						AGTTTGTGTCGGAATGACAGA	0.393													10	98					0	0	1	0	0
ANUBL1	93550	broad.mit.edu	37	10	46122066	46122066	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46122066G>A	uc001jcp.3	-	7	1447	c.1205C>T	c.(1204-1206)GCT>GTT	p.A402V	ANUBL1_uc001jcl.3_5'UTR|ANUBL1_uc001jcm.3_Missense_Mutation_p.A402V|ANUBL1_uc009xmu.2_Missense_Mutation_p.A328V|ANUBL1_uc001jcn.3_Missense_Mutation_p.A328V|ANUBL1_uc001jco.3_Intron	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	402							zinc ion binding				0						TGCAAATGAAGCCAGTGAGCC	0.433													45	103					0	0	1	0	0
ANUBL1	93550	broad.mit.edu	37	10	46143848	46143848	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46143848G>A	uc001jcp.3	-	5	705	c.463C>T	c.(463-465)CCT>TCT	p.P155S	ANUBL1_uc001jcl.3_5'UTR|ANUBL1_uc001jcm.3_Missense_Mutation_p.P155S|ANUBL1_uc009xmu.2_Missense_Mutation_p.P81S|ANUBL1_uc001jcn.3_Missense_Mutation_p.P81S|ANUBL1_uc001jco.3_Missense_Mutation_p.P155S|ANUBL1_uc001jcq.2_RNA	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	155							zinc ion binding				0						TCTACTGCAGGAAAGAAATTC	0.413													20	162					0	0	1	0	0
ANUBL1	93550	broad.mit.edu	37	10	46148504	46148504	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46148504A>G	uc001jcp.3	-	3	430	c.188T>C	c.(187-189)ATT>ACT	p.I63T	ANUBL1_uc001jcm.3_Missense_Mutation_p.I63T|ANUBL1_uc009xmu.2_5'UTR|ANUBL1_uc001jcn.3_5'UTR|ANUBL1_uc001jco.3_Missense_Mutation_p.I63T|ANUBL1_uc001jcq.2_RNA|ANUBL1_uc001jcr.2_Missense_Mutation_p.I63T	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	63	Ubiquitin-like.						zinc ion binding				0						ACAGATGGGAATACCTTAAGG	0.303													22	71					0	0	1	0	0
SYT15	83849	broad.mit.edu	37	10	46962038	46962038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46962038C>T	uc001jea.2	-	8	1351	c.1198G>A	c.(1198-1200)GAG>AAG	p.E400K	SYT15_uc001jdz.2_Intron|SYT15_uc001jeb.2_Missense_Mutation_p.E278K|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	400	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						CTGAGCATCTCGTCCCAGTGC	0.677													20	79					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46998940	46998940	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46998940C>T	uc001jec.2	+	3	195	c.60C>T	c.(58-60)CCC>CCT	p.P20P	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	20											0						GCCTTCAGCCCCTGTCCCAGA	0.687													9	134					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999077	46999077	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46999077G>A	uc001jec.2	+	3	332	c.197G>A	c.(196-198)GGG>GAG	p.G66E	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	66											0						GAGGAAGAGGGGAACCCGCCT	0.692													11	80					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999549	46999549	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46999549C>T	uc001jec.2	+	3	804	c.669C>T	c.(667-669)ACC>ACT	p.T223T	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	223											0						AGCTGGCTACCACCACCTGCC	0.637													13	39					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999572	46999572	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46999572C>T	uc001jec.2	+	3	827	c.692C>T	c.(691-693)CCA>CTA	p.P231L	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	231											0						GCTCTGCCCCCAGCTGCTCTA	0.627													15	38					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999578	46999578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46999578C>T	uc001jec.2	+	3	833	c.698C>T	c.(697-699)GCT>GTT	p.A233V	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	233											0						CCCCCAGCTGCTCTACTCTGT	0.632													5	48					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999996	46999996	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:46999996G>A	uc001jec.2	+	3	1251	c.1116G>A	c.(1114-1116)CTG>CTA	p.L372L	GPRIN2_uc010qfq.1_Silent_p.L135L	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	372											0						GGTCCAGCCTGGAGGAGGTGC	0.672													16	111					0	0	1	0	0
PPYR1	5540	broad.mit.edu	37	10	47087792	47087792	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:47087792G>A	uc001jee.2	+	3	1428	c.1009G>A	c.(1009-1011)GTG>ATG	p.V337M	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.V337M	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	337	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						CAAGGCCCTGGTGCTGACTTG	0.562													18	120					0	0	1	0	0
PPYR1	5540	broad.mit.edu	37	10	47087825	47087825	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:47087825G>A	uc001jee.2	+	3	1461	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.E348K	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	348	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						CCCCCTGGAGGAGTCGGAGCA	0.552													17	142					0	0	1	0	0
FAM35B2	439965	broad.mit.edu	37	10	47379972	47379972	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:47379972G>A	uc010qfz.1	+	1		c.253G>A				NR_027634				Homo sapiens cDNA FLJ59018 complete cds, highly similar to Protein FAM35A.												0						CAAACTGTATGAATAGACATG	0.363													3	21					0	0	1	0	0
FAM35B2	439965	broad.mit.edu	37	10	47380998	47380998	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:47380998G>A	uc010qfz.1	+	1		c.1279G>A				NR_027634				Homo sapiens cDNA FLJ59018 complete cds, highly similar to Protein FAM35A.												0						CTGAATTTAAGAGTATTAAAA	0.328													16	47					0	0	1	0	0
ZNF488	118738	broad.mit.edu	37	10	48370644	48370644	+	Missense_Mutation	SNP	G	A	A	rs138519620	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48370644G>A	uc001jex.2	+	2	274	c.112G>A	c.(112-114)GAA>AAA	p.E38K	ZNF488_uc001jey.2_5'UTR	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	38					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCGACTTAGCGAACCTGAGCT	0.667													38	92					0	0	1	0	0
ZNF488	118738	broad.mit.edu	37	10	48370691	48370691	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48370691G>A	uc001jex.2	+	2	321	c.159G>A	c.(157-159)ACG>ACA	p.T53T	ZNF488_uc001jey.2_5'UTR	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	53					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCGAGAAGACGAACCGCCTGG	0.677													25	59					0	0	1	0	0
ZNF488	118738	broad.mit.edu	37	10	48370707	48370707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48370707G>A	uc001jex.2	+	2	337	c.175G>A	c.(175-177)GAG>AAG	p.E59K	ZNF488_uc001jey.2_5'UTR	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	59					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCTGGGCCCTGAGGCTGCTGT	0.677													22	45					0	0	1	0	0
ZNF488	118738	broad.mit.edu	37	10	48371472	48371472	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48371472G>A	uc001jex.2	+	2	1102	c.940G>A	c.(940-942)GAA>AAA	p.E314K	ZNF488_uc001jey.2_Missense_Mutation_p.E207K	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GAAGCGGAGAGAAGAGGCCCT	0.597													38	91					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48381938	48381938	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48381938C>T	uc001jez.2	-	4	3825	c.3711G>A	c.(3709-3711)GTG>GTA	p.V1237V		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1237					lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGCTCCGCTTCACCCTCAGCT	0.647													4	20					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48382030	48382030	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48382030C>T	uc001jez.2	-	4	3733	c.3619G>A	c.(3619-3621)GAA>AAA	p.E1207K		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1207	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CCCACCCCTTCCCAGGAGCTG	0.642													32	52					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48385910	48385910	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48385910C>T	uc001jez.2	-	2	3296	c.3182G>A	c.(3181-3183)AGG>AAG	p.R1061K		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1061	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CACCAGCAGCCTGGAGACCTG	0.537													38	114					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48388446	48388446	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48388446G>A	uc001jez.2	-	1	2546	c.2432C>T	c.(2431-2433)TCT>TTT	p.S811F		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	811	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GTCAAAGACAGAATACAGGTG	0.607													9	14					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48388705	48388705	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48388705C>T	uc001jez.2	-	1	2287	c.2173G>A	c.(2173-2175)GAG>AAG	p.E725K		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	725	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TAGGTGAGCTCCTCTGGAGAG	0.617													23	34					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48388862	48388862	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48388862G>A	uc001jez.2	-	1	2130	c.2016C>T	c.(2014-2016)GCC>GCT	p.A672A		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	672	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CTGTGCGGTAGGCGCCCTGGG	0.667													13	25					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48389216	48389216	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48389216G>A	uc001jez.2	-	1	1776	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	554	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	ACTGCATAAGGAAGGCGAACT	0.672													27	49					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48390061	48390061	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48390061C>T	uc001jez.2	-	1	931	c.817G>A	c.(817-819)GAG>AAG	p.E273K		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	273	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	AAGTCAGACTCGCCTATCCTC	0.677													10	25					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48390632	48390632	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48390632C>T	uc001jez.2	-	1	360	c.246G>A	c.(244-246)CTG>CTA	p.L82L		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	82	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GAGGATCGTTCAGGGAGCTCT	0.612													31	59					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48413716	48413716	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48413716G>A	uc001jfa.1	-	2	1315	c.1152C>T	c.(1150-1152)TTC>TTT	p.F384F		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	384					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CCTTTGTGGGGAACTTGAGAT	0.577													6	39					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48413782	48413782	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48413782G>A	uc001jfa.1	-	2	1249	c.1086C>T	c.(1084-1086)TTC>TTT	p.F362F		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	362					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CAGCCAAGGGGAAGAAGCAGC	0.582													19	51					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48413859	48413859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48413859C>T	uc001jfa.1	-	2	1172	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	337					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CCGATGTCCTCGAAGTTTACC	0.612													28	80					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48414342	48414342	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48414342G>A	uc001jfa.1	-	2	689	c.526C>T	c.(526-528)CTG>TTG	p.L176L		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	176					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GTTCCATCCAGAACATCATAA	0.522													16	43					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48416519	48416519	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48416519G>A	uc001jfa.1	-	1	338	c.175C>T	c.(175-177)CTG>TTG	p.L59L		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	59					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						ACGTTCTCCAGAAACATCTTC	0.607													6	55					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48428731	48428731	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48428731G>A	uc001jfb.2	-	2	1611	c.1155C>T	c.(1153-1155)TTC>TTT	p.F385F	GDF10_uc009xnp.2_Silent_p.F384F|GDF10_uc009xnq.1_Silent_p.F385F	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	385					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						CGATGTCTGCGAAGTCCACCT	0.552													34	54					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48428946	48428946	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48428946G>A	uc001jfb.2	-	2	1396	c.940C>T	c.(940-942)CAC>TAC	p.H314Y	GDF10_uc009xnp.2_Missense_Mutation_p.H313Y|GDF10_uc009xnq.1_Missense_Mutation_p.H314Y	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	314					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						TGCTGTGCGTGGGCGCGCGGC	0.716													9	14					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48429349	48429349	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48429349C>T	uc001jfb.2	-	2	993	c.537G>A	c.(535-537)CAG>CAA	p.Q179Q	GDF10_uc009xnp.2_Silent_p.Q178Q|GDF10_uc009xnq.1_Silent_p.Q179Q	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	179					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						TGGCCGTGTTCTGCGAGAGGC	0.721													4	28					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48429431	48429431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48429431G>A	uc001jfb.2	-	2	911	c.455C>T	c.(454-456)CCG>CTG	p.P152L	GDF10_uc009xnp.2_Missense_Mutation_p.P151L|GDF10_uc009xnq.1_Missense_Mutation_p.P152L	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	152					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						CTTGGCCCGCGGCTTGCATAG	0.652													3	17					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48438674	48438674	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:48438674C>T	uc001jfb.2	-	1	493	c.37G>A	c.(37-39)GGG>AGG	p.G13R	GDF10_uc009xnp.2_Missense_Mutation_p.G13R|GDF10_uc009xnq.1_Missense_Mutation_p.G13R	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	13					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						agcTGGGGCCCGGGTCCCGGG	0.612													5	25					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	49239436	49239436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49239436C>T	uc001jgd.2	-	1	223	c.64G>A	c.(64-66)GAC>AAC	p.D22N						RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		ATGTGGAGGTCCTCACCAACT	0.577													13	73					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	49313271	49313271	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49313271C>T	uc009xny.1	-	3		c.445G>A								Homo sapiens cDNA, FLJ99963.																		CCTGTCTCTTCCGAAGGGGCC	0.463													46	73					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49386169	49386169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49386169G>A	uc001jgi.2	-	22	2923	c.2816C>T	c.(2815-2817)TCA>TTA	p.S939L	FRMPD2_uc001jgh.2_Missense_Mutation_p.S907L|FRMPD2_uc001jgj.2_Missense_Mutation_p.S917L|FRMPD2_uc001jgg.2_5'Flank|FRMPD2_uc001jgk.2_5'UTR	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	939					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TTCTGGAGGTGATGGAGGACA	0.423													12	27					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49420128	49420128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49420128G>A	uc001jgi.2	-	13	1587	c.1480C>T	c.(1480-1482)CAC>TAC	p.H494Y	FRMPD2_uc001jgh.2_Missense_Mutation_p.H462Y|FRMPD2_uc001jgj.2_Missense_Mutation_p.H472Y	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	494	FERM.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TCTTCAACGTGAAAGTATGGC	0.517													12	22					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49440321	49440321	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49440321C>T	uc001jgi.2	-	10	1112	c.1005G>A	c.(1003-1005)GGG>GGA	p.G335G	FRMPD2_uc001jgh.2_Silent_p.G304G|FRMPD2_uc001jgj.2_Silent_p.G313G	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	335					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		AATAGGATTTCCCTTTTTTGG	0.308													12	21					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49446098	49446098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49446098G>A	uc001jgi.2	-	8	964	c.857C>T	c.(856-858)TCG>TTG	p.S286L	FRMPD2_uc001jgh.2_Missense_Mutation_p.S255L|FRMPD2_uc001jgj.2_Missense_Mutation_p.S264L	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	286					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GTCTGCTGCCGAGTGCACAGA	0.572													39	77					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49446130	49446130	+	Silent	SNP	C	T	T	rs149962060		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49446130C>T	uc001jgi.2	-	8	932	c.825G>A	c.(823-825)GCG>GCA	p.A275A	FRMPD2_uc001jgh.2_Silent_p.A244A|FRMPD2_uc001jgj.2_Silent_p.A253A	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	275					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GCCTCCGGCCCGCCTGCTGGT	0.577													20	61					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49459669	49459669	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49459669C>T	uc001jgi.2	-	2	198	c.91G>A	c.(91-93)GAG>AAG	p.E31K	FRMPD2_uc001jgh.2_Missense_Mutation_p.E22K|FRMPD2_uc001jgj.2_Missense_Mutation_p.E31K	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	31	KIND.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		CAGATTTCCTCCTCAGACAGA	0.577													5	73					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49459684	49459684	+	Missense_Mutation	SNP	C	T	T	rs143814415		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49459684C>T	uc001jgi.2	-	2	183	c.76G>A	c.(76-78)GAA>AAA	p.E26K	FRMPD2_uc001jgh.2_Missense_Mutation_p.E17K|FRMPD2_uc001jgj.2_Missense_Mutation_p.E26K	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	26	KIND.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GACAGAGCTTCACCCCTGACC	0.572													23	53					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49654453	49654453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49654453C>T	uc001jgt.2	-	10	2375	c.2078G>A	c.(2077-2079)GGT>GAT	p.G693D	ARHGAP22_uc001jgs.2_Missense_Mutation_p.G603D|ARHGAP22_uc001jgu.2_Missense_Mutation_p.G709D|ARHGAP22_uc010qgl.1_Missense_Mutation_p.G650D|ARHGAP22_uc010qgm.1_Missense_Mutation_p.G699D|ARHGAP22_uc001jgv.2_Missense_Mutation_p.G391D|ARHGAP22_uc001jgr.2_Missense_Mutation_p.G410D	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	693					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						GGCCCTGGCACCTTTTGCCCC	0.542													20	85					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49654524	49654524	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49654524C>T	uc001jgt.2	-	10	2304	c.2007G>A	c.(2005-2007)AGG>AGA	p.R669R	ARHGAP22_uc001jgs.2_Silent_p.R579R|ARHGAP22_uc001jgu.2_Silent_p.R685R|ARHGAP22_uc010qgl.1_Silent_p.R626R|ARHGAP22_uc010qgm.1_Silent_p.R675R|ARHGAP22_uc001jgv.2_Silent_p.R367R|ARHGAP22_uc001jgr.2_Silent_p.R386R	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	669	Potential.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						ACAGCTGGTTCCTCCTCTCCG	0.512													47	90					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49663097	49663097	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49663097C>T	uc001jgt.2	-	6	1037	c.740G>A	c.(739-741)AGG>AAG	p.R247K	ARHGAP22_uc001jgs.2_Missense_Mutation_p.R157K|ARHGAP22_uc001jgu.2_Missense_Mutation_p.R263K|ARHGAP22_uc010qgl.1_Missense_Mutation_p.R204K|ARHGAP22_uc010qgm.1_Missense_Mutation_p.R253K|ARHGAP22_uc001jgv.2_5'UTR	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	247	Rho-GAP.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						GTCCTCGTACCTGGCGAAGGG	0.667													6	22					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49663135	49663135	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49663135G>A	uc001jgt.2	-	6	999	c.702C>T	c.(700-702)TAC>TAT	p.Y234Y	ARHGAP22_uc001jgs.2_Silent_p.Y144Y|ARHGAP22_uc001jgu.2_Silent_p.Y250Y|ARHGAP22_uc010qgl.1_Silent_p.Y191Y|ARHGAP22_uc010qgm.1_Silent_p.Y240Y|ARHGAP22_uc001jgv.2_5'UTR	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	234	Rho-GAP.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						GCTCCCGCAGGTACAGCTTCA	0.662													7	24					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49812809	49812809	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49812809C>T	uc001jgt.2	-	1	330	c.33G>A	c.(31-33)AGG>AGA	p.R11R	ARHGAP22_uc001jgu.2_Silent_p.R11R|ARHGAP22_uc010qgl.1_Silent_p.R11R|ARHGAP22_uc010qgm.1_Intron|ARHGAP22_uc001jgv.2_Intron	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	11					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						TGGACTTACCCCTCCTGGCCT	0.612													19	77					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49812813	49812813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:49812813C>T	uc001jgt.2	-	1	326	c.29G>A	c.(28-30)AGG>AAG	p.R10K	ARHGAP22_uc001jgu.2_Missense_Mutation_p.R10K|ARHGAP22_uc010qgl.1_Missense_Mutation_p.R10K|ARHGAP22_uc010qgm.1_Intron|ARHGAP22_uc001jgv.2_Intron	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	10					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						CTTACCCCTCCTGGCCTGCCT	0.607													25	70					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50121439	50121439	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50121439C>T	uc001jhd.2	-	1	842	c.762G>A	c.(760-762)TGG>TGA	p.W254*	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Nonsense_Mutation_p.W254*	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	254						cytoplasm				ovary(1)|pancreas(1)	2						CAAGTCACCTCCAGTCTTCCC	0.547													57	150					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50121447	50121447	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50121447C>T	uc001jhd.2	-	1	834	c.754G>A	c.(754-756)GAA>AAA	p.E252K	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Missense_Mutation_p.E252K	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	252						cytoplasm				ovary(1)|pancreas(1)	2						CTCCAGTCTTCCCAGGAGTCC	0.547													72	145					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50121613	50121613	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50121613C>T	uc001jhd.2	-	1	668	c.588G>A	c.(586-588)GAG>GAA	p.E196E	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.E196E	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	196						cytoplasm				ovary(1)|pancreas(1)	2						CATACAAGTTCTCCAGCCTCC	0.493													35	83					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50121997	50121997	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50121997G>A	uc001jhd.2	-	1	284	c.204C>T	c.(202-204)TCC>TCT	p.S68S	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.S68S	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	68	LRR 2.					cytoplasm				ovary(1)|pancreas(1)	2						ACTTGGAGATGGAGTCAGGGA	0.532													11	43					0	0	1	0	0
C10orf72	196740	broad.mit.edu	37	10	50294041	50294041	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50294041G>A	uc001jhf.2	-	3	514	c.485C>T	c.(484-486)TCA>TTA	p.S162L		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	162	Extracellular (Potential).					integral to membrane|plasma membrane					0						CTCAAAGGATGACTCTTCAGA	0.284													12	61					0	0	1	0	0
C10orf72	196740	broad.mit.edu	37	10	50315887	50315887	+	Missense_Mutation	SNP	G	A	A	rs11554413		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50315887G>A	uc001jhf.2	-	2	238	c.209C>T	c.(208-210)TCC>TTC	p.S70F	C10orf72_uc001jhh.2_Missense_Mutation_p.S70F	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	70	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						GGCCTCCTGGGAGTCGAAGGA	0.612													24	58					0	0	1	0	0
C10orf128	170371	broad.mit.edu	37	10	50396355	50396355	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50396355C>T	uc001jhn.3	-	1	53	c.27G>A	c.(25-27)AGG>AGA	p.R9R	C10orf128_uc001jhm.3_Silent_p.R9R|C10orf128_uc010qgo.1_Silent_p.R9R|C10orf128_uc001jho.3_Silent_p.R9R	NM_001010863	NP_001010863	Q5T292	CJ128_HUMAN	hypothetical protein LOC170371 precursor	9						integral to membrane				lung(1)	1						GGAAGAGGATCCTCAGCATGC	0.647													26	84					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50530608	50530608	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50530608G>A	uc010qgp.1	+	3	357	c.18G>A	c.(16-18)AAG>AAA	p.K6K		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	6											0						AAGGAAATAAGAAGTGCACAG	0.537													4	13					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531100	50531100	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50531100G>A	uc010qgp.1	+	3	849	c.510G>A	c.(508-510)CTG>CTA	p.L170L		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	170											0						CTCCGGCTCTGAAAAATCCTC	0.498													11	35					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531154	50531154	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50531154C>T	uc010qgp.1	+	3	903	c.564C>T	c.(562-564)TTC>TTT	p.F188F		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	188											0						ACTTCTGCTTCGATTCTGCCT	0.547													10	36					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531463	50531463	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50531463G>A	uc010qgp.1	+	3	1212	c.873G>A	c.(871-873)AAG>AAA	p.K291K		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	291											0						TGGAGAGAAAGGACACAGCTG	0.537													12	23					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531592	50531592	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50531592A>T	uc010qgp.1	+	3	1341	c.1002A>T	c.(1000-1002)GAA>GAT	p.E334D		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	334											0						GCAGTCAGGAAGAGAACAGAC	0.582													11	54					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531646	50531646	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50531646G>A	uc010qgp.1	+	3	1395	c.1056G>A	c.(1054-1056)AGG>AGA	p.R352R		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	352											0						GGGGGTGCAGGGATCCAGGAG	0.582													16	32					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531707	50531707	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50531707C>T	uc010qgp.1	+	3	1456	c.1117C>T	c.(1117-1119)CAA>TAA	p.Q373*		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	373											0						ACCTGATTCTCAAGAGAAGCC	0.512													16	69					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531760	50531760	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50531760G>A	uc010qgp.1	+	3	1509	c.1170G>A	c.(1168-1170)GGG>GGA	p.G390G		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	390											0						GCAAAAAAGGGAAAGAAAGTC	0.463													28	85					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531893	50531893	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50531893G>A	uc010qgp.1	+	3	1642	c.1303G>A	c.(1303-1305)GAA>AAA	p.E435K		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	435											0						GGAACCCAATGAACATTATGA	0.512													27	87					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50532019	50532019	+	Missense_Mutation	SNP	G	A	A	rs141342139	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50532019G>A	uc010qgp.1	+	3	1768	c.1429G>A	c.(1429-1431)GGA>AGA	p.G477R		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	477											0						ACAGCTAAACGGATACCAAGA	0.572													7	26					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50532053	50532053	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50532053C>T	uc010qgp.1	+	3	1802	c.1463C>T	c.(1462-1464)TCT>TTT	p.S488F		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	488											0						GAATGTCAGTCTCGAGACAGC	0.547													4	25					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50532391	50532391	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50532391C>T	uc010qgp.1	+	3	2140	c.1801C>T	c.(1801-1803)CCC>TCC	p.P601S		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	601											0						CGCCAAAGCCCCCTTCTATGT	0.547													10	23					0	0	1	0	0
DRGX	644168	broad.mit.edu	37	10	50574376	50574376	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50574376G>A	uc010qgq.1	-	6	592	c.592C>T	c.(592-594)CTT>TTT	p.L198F		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	198					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TAGGTGGGAAGGAAGGAGAGT	0.602													28	72					0	0	1	0	0
ERCC6	2074	broad.mit.edu	37	10	50679123	50679123	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50679123G>A	uc001jhs.3	-	17	3122	c.2968C>T	c.(2968-2970)CCA>TCA	p.P990S	ERCC6_uc009xod.2_Missense_Mutation_p.P150S|ERCC6_uc010qgr.1_Missense_Mutation_p.P360S|ERCC6_uc001jhr.3_Missense_Mutation_p.P358S	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	990	Helicase C-terminal.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						CTTTGTTTTGGGTCTTTTAGC	0.348								Direct_reversal_of_damage|NER					24	119					0	0	1	0	0
ERCC6	2074	broad.mit.edu	37	10	50684298	50684298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50684298G>A	uc001jhs.3	-	12	2499	c.2345C>T	c.(2344-2346)TCC>TTC	p.S782F	ERCC6_uc009xod.2_5'UTR|ERCC6_uc010qgr.1_Missense_Mutation_p.S152F|ERCC6_uc001jhr.3_Intron	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	782					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						AACTTCTTTGGAATCAACGAA	0.378								Direct_reversal_of_damage|NER					21	76					0	0	1	0	0
ERCC6	2074	broad.mit.edu	37	10	50701195	50701195	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50701195G>A	uc001jhs.3	-	8	1943	c.1789C>T	c.(1789-1791)CTA>TTA	p.L597L	ERCC6_uc010qgr.1_Intron|ERCC6_uc001jhr.3_5'UTR	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	597	Helicase ATP-binding.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						GTTTCATGTAGAATTGCCACT	0.413								Direct_reversal_of_damage|NER					12	42					0	0	1	0	0
ERCC6	2074	broad.mit.edu	37	10	50736487	50736487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50736487G>A	uc001jhs.3	-	4	782	c.628C>T	c.(628-630)CAC>TAC	p.H210Y	PGBD3_uc009xoe.2_Missense_Mutation_p.H210Y|PGBD3_uc001jhu.2_Missense_Mutation_p.H210Y	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	210					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						AGACTGGCGTGATCTAGTTCA	0.458								Direct_reversal_of_damage|NER					24	71					0	0	1	0	0
SLC18A3	6572	broad.mit.edu	37	10	50819612	50819612	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50819612C>T	uc001jhw.2	+	1	1266	c.826C>T	c.(826-828)CTG>TTG	p.L276L	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank|CHAT_uc010qgs.1_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	276	Cytoplasmic (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						TCGGGCCAACCTGCCAGTGGG	0.652													31	56					0	0	1	0	0
SLC18A3	6572	broad.mit.edu	37	10	50819707	50819707	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50819707C>T	uc001jhw.2	+	1	1361	c.921C>T	c.(919-921)TTC>TTT	p.F307F	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank|CHAT_uc010qgs.1_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	307	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						CCCTCGCCTTCCTCGAACCCA	0.637													48	77					0	0	1	0	0
CHAT	1103	broad.mit.edu	37	10	50857597	50857597	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50857597G>A	uc001jhz.2	+	10	1579	c.1426G>A	c.(1426-1428)GAG>AAG	p.E476K	CHAT_uc001jhv.1_Missense_Mutation_p.E358K|CHAT_uc001jhx.1_Missense_Mutation_p.E358K|CHAT_uc001jhy.1_Missense_Mutation_p.E358K|CHAT_uc001jia.2_Missense_Mutation_p.E358K|CHAT_uc010qgs.1_Missense_Mutation_p.E358K	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	476					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	CTCCGTCAGCGAGCTCCCCGC	0.617													16	68					0	0	1	0	0
C10orf53	282966	broad.mit.edu	37	10	50902647	50902647	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50902647G>A	uc001jib.2	+	3	341	c.281G>A	c.(280-282)TGA>TAA	p.*94*	C10orf53_uc001jic.1_3'UTR|C10orf53_uc001jid.1_Intron	NM_001042427	NP_001035892	Q8N6V4	CJ053_HUMAN	chromosome 10 open reading frame 53 isoform b	94											0		all_neural(218;0.107)				AATGCCTACTGATCTCCTCAT	0.512													18	47					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50946288	50946288	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50946288C>T	uc001jie.2	-	18	2482	c.2340G>A	c.(2338-2340)GCG>GCA	p.A780A	OGDHL_uc009xog.2_Silent_p.A807A|OGDHL_uc010qgt.1_Silent_p.A723A|OGDHL_uc010qgu.1_Silent_p.A571A	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	780					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TTTCGGGCCTCGCTGACGAGT	0.617													13	42					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50947861	50947861	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50947861G>A	uc001jie.2	-	17	2307	c.2165C>T	c.(2164-2166)GCC>GTC	p.A722V	OGDHL_uc009xog.2_Missense_Mutation_p.A749V|OGDHL_uc010qgt.1_Missense_Mutation_p.A665V|OGDHL_uc010qgu.1_Missense_Mutation_p.A513V	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	722					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						ATTGGGGCTGGCCATGGCATA	0.562													17	37					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50957857	50957857	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50957857C>T	uc001jie.2	-	8	1044	c.902G>A	c.(901-903)AGG>AAG	p.R301K	OGDHL_uc009xog.2_Missense_Mutation_p.R328K|OGDHL_uc010qgt.1_Missense_Mutation_p.R244K|OGDHL_uc010qgu.1_Missense_Mutation_p.R92K|OGDHL_uc009xoh.2_Missense_Mutation_p.R92K	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	301					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CACGTTCAGCCTTCCCCTGGA	0.667													7	12					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50958925	50958925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50958925C>T	uc001jie.2	-	7	998	c.856G>A	c.(856-858)GAG>AAG	p.E286K	OGDHL_uc009xog.2_Missense_Mutation_p.E313K|OGDHL_uc010qgt.1_Missense_Mutation_p.E229K|OGDHL_uc010qgu.1_Missense_Mutation_p.E77K|OGDHL_uc009xoh.2_Missense_Mutation_p.E77K	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	286					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						ATCCCCATCTCGCTGGATTTG	0.582													5	25					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50959005	50959005	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50959005C>T	uc001jie.2	-	7	918	c.776G>A	c.(775-777)TGG>TAG	p.W259*	OGDHL_uc009xog.2_Nonsense_Mutation_p.W286*|OGDHL_uc010qgt.1_Nonsense_Mutation_p.W202*|OGDHL_uc010qgu.1_Nonsense_Mutation_p.W50*|OGDHL_uc009xoh.2_Nonsense_Mutation_p.W50*	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	259					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CTCTGAGGACCATTTCCGGGC	0.418													5	17					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50959019	50959019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50959019G>A	uc001jie.2	-	7	904	c.762C>T	c.(760-762)TTC>TTT	p.F254F	OGDHL_uc009xog.2_Silent_p.F281F|OGDHL_uc010qgt.1_Silent_p.F197F|OGDHL_uc010qgu.1_Silent_p.F45F|OGDHL_uc009xoh.2_Silent_p.F45F	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	254					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TCCGGGCCAGGAAGTCTTCAA	0.423													4	10					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50964978	50964978	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:50964978G>A	uc001jie.2	-	3	361	c.219C>T	c.(217-219)TTC>TTT	p.F73F	OGDHL_uc009xog.2_Silent_p.F100F|OGDHL_uc010qgt.1_Intron|OGDHL_uc010qgu.1_Intron|OGDHL_uc009xoh.2_5'UTR	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	73					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CTTCCCTGAAGAAGCTGTCCC	0.612													17	61					0	0	1	0	0
AGAP8	728404	broad.mit.edu	37	10	51225257	51225257	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:51225257C>T	uc001jij.2	-	7	1851	c.1725G>A	c.(1723-1725)GAG>GAA	p.E575E	PARG_uc001jih.2_Intron|PARG_uc001jif.2_Intron|PARG_uc001jig.2_Intron|PARG_uc010qgv.1_Intron|PARG_uc009xoi.2_Intron|PARG_uc010qgw.1_Intron|PARG_uc009xoj.2_Intron|PARG_uc010qgx.1_Intron|AGAP8_uc009xom.2_Silent_p.E490E|AGAP8_uc001jik.2_Silent_p.E559E|AGAP8_uc010qgy.1_Silent_p.E598E|uc001jil.1_5'Flank	NM_001077686	NP_001071154	Q5SRD3	AGAP8_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	575					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TCTGCAGGTCCTCATCAGCGG	0.632													7	117					0	0	1	0	0
AGAP7	653268	broad.mit.edu	37	10	51465237	51465237	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:51465237C>T	uc001jio.2	-	7	1345	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	407	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GCATCCCGCTCCTCATATGTC	0.512													48	145					0	0	1	0	0
AGAP7	653268	broad.mit.edu	37	10	51465313	51465313	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:51465313C>T	uc001jio.2	-	7	1269	c.1143G>A	c.(1141-1143)AAG>AAA	p.K381K	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	381	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TGCTTTTCTTCTTTAGGTGTT	0.517													30	111					0	0	1	0	0
MSMB	4477	broad.mit.edu	37	10	51555737	51555737	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:51555737C>T	uc001jiq.2	+	2	42	c.10C>T	c.(10-12)CTC>TTC	p.L4F	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|MSMB_uc001jir.2_Missense_Mutation_p.L4F	NM_002443	NP_002434	P08118	MSMB_HUMAN	beta-microseminoprotein isoform a precursor	4						extracellular space|nucleus				ovary(2)	2						ACAGAATGTTCTCCTGGGCAG	0.318									Hereditary_Prostate_Cancer				17	40					0	0	1	0	0
MSMB	4477	broad.mit.edu	37	10	51556768	51556768	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:51556768G>A	uc001jiq.2	+	3	159	c.127G>A	c.(127-129)GGA>AGA	p.G43R	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|MSMB_uc001jir.2_Intron	NM_002443	NP_002434	P08118	MSMB_HUMAN	beta-microseminoprotein isoform a precursor	43						extracellular space|nucleus				ovary(2)	2						GGATCTCAAAGGAAACAAACA	0.428									Hereditary_Prostate_Cancer				19	48					0	0	1	0	0
MSMB	4477	broad.mit.edu	37	10	51562352	51562352	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:51562352G>A	uc001jiq.2	+	4	329	c.297G>A	c.(295-297)GAG>GAA	p.E99E	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|MSMB_uc001jir.2_Missense_Mutation_p.R64K|NCOA4_uc009xon.2_5'Flank|NCOA4_uc010qhd.1_5'Flank|NCOA4_uc001jis.3_5'Flank|NCOA4_uc010qhe.1_5'Flank|NCOA4_uc010qhf.1_5'Flank	NM_002443	NP_002434	P08118	MSMB_HUMAN	beta-microseminoprotein isoform a precursor	99						extracellular space|nucleus				ovary(2)	2						TCGTGGTGGAGAAGAAGGACC	0.463									Hereditary_Prostate_Cancer				59	130					0	0	1	0	0
MSMB	4477	broad.mit.edu	37	10	51562358	51562358	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:51562358G>A	uc001jiq.2	+	4	335	c.303G>A	c.(301-303)AAG>AAA	p.K101K	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|MSMB_uc001jir.2_Missense_Mutation_p.R66K|NCOA4_uc009xon.2_5'Flank|NCOA4_uc010qhd.1_5'Flank|NCOA4_uc001jis.3_5'Flank|NCOA4_uc010qhe.1_5'Flank|NCOA4_uc010qhf.1_5'Flank	NM_002443	NP_002434	P08118	MSMB_HUMAN	beta-microseminoprotein isoform a precursor	101						extracellular space|nucleus				ovary(2)	2						TGGAGAAGAAGGACCCAAAAA	0.468									Hereditary_Prostate_Cancer				18	169					0	0	1	0	0
AGAP6	414189	broad.mit.edu	37	10	51751483	51751483	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:51751483C>T	uc001jix.3	+	3	738	c.340C>T	c.(340-342)CAG>TAG	p.Q114*		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	114					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						CACAATATTCCAGAGGAACTC	0.348													17	176					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	51818892	51818892	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:51818892G>A	uc001jiz.1	-	3		c.1539C>T								Homo sapiens cDNA FLJ31813 fis, clone NT2RI2009517.																		GGGGTGTCGAGAAAAAGtcgt	0.433													11	21					0	0	1	0	0
ASAH2	56624	broad.mit.edu	37	10	52003004	52003004	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52003004G>A	uc001jjd.2	-	3	468	c.468C>T	c.(466-468)GTC>GTT	p.V156V	ASAH2_uc009xos.2_Silent_p.V156V	NM_019893	NP_063946	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase 2 isoform a	156	Lumenal (Potential).				apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						TGTCGATGCTGACAAACACTG	0.473													68	173					0	0	1	0	0
SGMS1	259230	broad.mit.edu	37	10	52103484	52103484	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52103484C>T	uc001jje.2	-	7	1345	c.391G>A	c.(391-393)GAG>AAG	p.E131K	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Missense_Mutation_p.E131K|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	137					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						TTGCCCCACTCCATGGGGTAC	0.488													38	72					0	0	1	0	0
SGMS1	259230	broad.mit.edu	37	10	52103717	52103717	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52103717G>A	uc001jje.2	-	7	1112	c.158C>T	c.(157-159)TCC>TTC	p.S53F	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Missense_Mutation_p.S53F|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	59	SAM.				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						ATTGTCAGAGGAGACTCGGCA	0.517													36	61					0	0	1	0	0
SGMS1	259230	broad.mit.edu	37	10	52103772	52103772	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52103772C>T	uc001jje.2	-	7	1057	c.103G>A	c.(103-105)GAC>AAC	p.D35N	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Missense_Mutation_p.D35N|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	41	SAM.				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						TTGATCAAGTCCTGGCCTGTG	0.512													29	57					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	52389396	52389396	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52389396C>T	uc001jjf.1	+	2		c.89C>T								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		CCCCAAGCTCCTCTATCAGAG	0.547													25	53					0	0	1	0	0
ASAH2B	653308	broad.mit.edu	37	10	52502754	52502754	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52502754C>T	uc001jjg.2	+	2	135	c.70C>T	c.(70-72)CTA>TTA	p.L24L	ASAH2B_uc010qhm.1_5'UTR	NM_001079516	NP_001072984	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase (non-lysosomal	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						AGAAACCTTGCTAAGGCTATT	0.338													15	166					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52573812	52573812	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52573812C>T	uc001jjj.2	-	10	1340	c.1152G>A	c.(1150-1152)ATG>ATA	p.M384I	A1CF_uc010qhn.1_Intron|A1CF_uc001jji.2_Intron|A1CF_uc001jjh.2_Intron|A1CF_uc010qho.1_Missense_Mutation_p.M392I|A1CF_uc009xov.2_Intron	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	384	Required for nuclear localization.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CAGGTACATTCATGTAAATTT	0.468													26	65					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52580396	52580396	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52580396C>T	uc001jjj.2	-	8	971	c.783G>A	c.(781-783)AGG>AGA	p.R261R	A1CF_uc010qhn.1_Silent_p.R269R|A1CF_uc001jji.2_Silent_p.R261R|A1CF_uc001jjh.2_Silent_p.R269R|A1CF_uc010qho.1_Silent_p.R269R|A1CF_uc009xov.2_Silent_p.R261R	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	261	RRM 3.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						TTTTCTTCACCCTCTCCACAG	0.393													8	62					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52587970	52587970	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52587970C>T	uc001jjj.2	-	7	878	c.690G>A	c.(688-690)GTG>GTA	p.V230V	A1CF_uc010qhn.1_Silent_p.V238V|A1CF_uc001jji.2_Silent_p.V230V|A1CF_uc001jjh.2_Silent_p.V238V|A1CF_uc010qho.1_Silent_p.V238V|A1CF_uc009xov.2_Silent_p.V230V	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	230					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						ATAGGATTTTCACTGAAGACA	0.363													26	79					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52595973	52595973	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52595973C>T	uc001jjj.2	-	6	653	c.465G>A	c.(463-465)GAG>GAA	p.E155E	A1CF_uc010qhn.1_Silent_p.E163E|A1CF_uc001jji.2_Silent_p.E155E|A1CF_uc001jjh.2_Silent_p.E163E|A1CF_uc010qho.1_Silent_p.E163E|A1CF_uc009xov.2_Silent_p.E155E	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	155	RRM 2.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CCTTTTTCATCTCCGATAAGA	0.468													29	131					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52596062	52596062	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52596062G>A	uc001jjj.2	-	6	564	c.376C>T	c.(376-378)CTC>TTC	p.L126F	A1CF_uc010qhn.1_Missense_Mutation_p.L134F|A1CF_uc001jji.2_Missense_Mutation_p.L126F|A1CF_uc001jjh.2_Missense_Mutation_p.L134F|A1CF_uc010qho.1_Missense_Mutation_p.L134F|A1CF_uc009xov.2_Missense_Mutation_p.L126F	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	126	RRM 1.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						ACCCCTAAGAGGCGCCCATTT	0.438													27	53					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52603771	52603771	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52603771C>T	uc001jjj.2	-	4	399	c.211G>A	c.(211-213)GAG>AAG	p.E71K	A1CF_uc010qhn.1_Missense_Mutation_p.E79K|A1CF_uc001jji.2_Missense_Mutation_p.E71K|A1CF_uc001jjh.2_Missense_Mutation_p.E79K|A1CF_uc010qho.1_Missense_Mutation_p.E79K|A1CF_uc009xov.2_Missense_Mutation_p.E71K|A1CF_uc001jjk.1_Missense_Mutation_p.E71K	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	71	RRM 1.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GGTATAAGCTCATCCTCAAAA	0.388													51	169					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52603784	52603784	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52603784G>A	uc001jjj.2	-	4	386	c.198C>T	c.(196-198)GAC>GAT	p.D66D	A1CF_uc010qhn.1_Silent_p.D74D|A1CF_uc001jji.2_Silent_p.D66D|A1CF_uc001jjh.2_Silent_p.D74D|A1CF_uc010qho.1_Silent_p.D74D|A1CF_uc009xov.2_Silent_p.D66D|A1CF_uc001jjk.1_Silent_p.D66D	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	66	RRM 1.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CCTCAAAAAGGTCTCGGGGAA	0.393													46	155					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52603813	52603813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52603813C>T	uc001jjj.2	-	4	357	c.169G>A	c.(169-171)GAA>AAA	p.E57K	A1CF_uc010qhn.1_Missense_Mutation_p.E65K|A1CF_uc001jji.2_Missense_Mutation_p.E57K|A1CF_uc001jjh.2_Missense_Mutation_p.E65K|A1CF_uc010qho.1_Missense_Mutation_p.E65K|A1CF_uc009xov.2_Missense_Mutation_p.E57K|A1CF_uc001jjk.1_Missense_Mutation_p.E57K	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	57	RRM 1.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						ATAAAAATTTCACAGCCCCTT	0.428													30	115					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52619652	52619652	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:52619652C>T	uc001jjj.2	-	3	237	c.49G>A	c.(49-51)GAA>AAA	p.E17K	A1CF_uc010qhn.1_5'UTR|A1CF_uc001jji.2_Missense_Mutation_p.E17K|A1CF_uc001jjh.2_5'UTR|A1CF_uc010qho.1_5'UTR|A1CF_uc009xov.2_Missense_Mutation_p.E17K|A1CF_uc001jjk.1_Missense_Mutation_p.E17K	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	17					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						AGGGCTGCTTCCTTCTGAGTG	0.483													36	54					0	0	1	0	0
CSTF2T	23283	broad.mit.edu	37	10	53459007	53459007	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:53459007T>A	uc001jjp.2	-	1	349	c.303A>T	c.(301-303)TTA>TTT	p.L101F	PRKG1_uc001jjm.2_Intron|PRKG1_uc001jjn.2_Intron|PRKG1_uc001jjo.2_Intron	NM_015235	NP_056050	Q9H0L4	CSTFT_HUMAN	cleavage stimulation factor, 3' pre-RNA, subunit	101					mRNA processing	nucleus	nucleotide binding|RNA binding			ovary(1)	1				COAD - Colon adenocarcinoma(2;0.00736)|Colorectal(2;0.00898)|all cancers(4;0.0188)|GBM - Glioblastoma multiforme(4;0.0778)|Epithelial(53;0.122)		CAAGGCTCTTTAACTCCTCCT	0.552													67	143					0	0	1	0	0
PRKG1	5592	broad.mit.edu	37	10	54031199	54031199	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:54031199C>T	uc001jjm.2	+	11	1412	c.1218C>T	c.(1216-1218)ATC>ATT	p.I406I	PRKG1_uc001jjo.2_Silent_p.I421I|PRKG1_uc009xow.1_Silent_p.I124I|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	406	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		AGGAGCACATCCGCTCAGAGA	0.463													13	45					0	0	1	0	0
PRKG1	5592	broad.mit.edu	37	10	54040554	54040554	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:54040554C>T	uc001jjm.2	+	13	1558	c.1364C>T	c.(1363-1365)TCG>TTG	p.S455L	PRKG1_uc001jjo.2_Missense_Mutation_p.S470L|PRKG1_uc009xow.1_Missense_Mutation_p.S173L|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	455	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		CTCAGAGGTTCGTTTGAAGAT	0.343													25	84					0	0	1	0	0
DKK1	22943	broad.mit.edu	37	10	54074332	54074332	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:54074332C>T	uc001jjr.2	+	1	292	c.138C>T	c.(136-138)CCC>CCT	p.P46P	uc001jjq.1_5'Flank|uc009xox.1_5'Flank	NM_012242	NP_036374	O94907	DKK1_HUMAN	dickkopf homolog 1 precursor	46					negative regulation of peptidyl-serine phosphorylation|negative regulation of protein complex assembly|negative regulation of transcription from RNA polymerase II promoter|positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization	extracellular space|plasma membrane	growth factor activity|low-density lipoprotein particle receptor binding|receptor antagonist activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						AGAACCTGCCCCCACCGCTGG	0.647											OREG0020191	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	95					0	0	1	0	0
MBL2	4153	broad.mit.edu	37	10	54530490	54530490	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:54530490G>A	uc001jjt.2	-	2	309	c.244C>T	c.(244-246)CCA>TCA	p.P82S		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	82	Collagen-like.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						GAAGGCCCTGGATTTCCTGGA	0.547													28	132					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55566490	55566490	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55566490C>T	uc010qhq.1	-	36	5293	c.4898G>A	c.(4897-4899)AGG>AAG	p.R1633K	PCDH15_uc010qhr.1_Missense_Mutation_p.R1628K	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GCTTTTCAGCCTGTTCCTTAG	0.448										HNSCC(58;0.16)			97	225					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55566682	55566682	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55566682G>A	uc010qhq.1	-	36	5101	c.4706C>T	c.(4705-4707)TCC>TTC	p.S1569F	PCDH15_uc010qhr.1_Missense_Mutation_p.S1564F	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	422	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TCGAACAGGGGAAGCAACTTT	0.458										HNSCC(58;0.16)			39	175					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55568937	55568937	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55568937C>T	uc010qhs.1	-	37	5283	c.4888G>A	c.(4888-4890)GAA>AAA	p.E1630K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.E1623K|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GACTCAGATTCCTCTTCTGTA	0.458										HNSCC(58;0.16)			31	50					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55569084	55569084	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55569084C>T	uc010qhs.1	-	37	5136	c.4741G>A	c.(4741-4743)GAA>AAA	p.E1581K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.E1574K|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTATCTTCTTCCTCAAGGCGT	0.418										HNSCC(58;0.16)			24	43					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55569295	55569295	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55569295C>T	uc010qhu.1	-	36	4960	c.4565G>A	c.(4564-4566)AGA>AAA	p.R1522K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Silent_p.K1510K|PCDH15_uc010qht.1_Silent_p.K1503K	NM_001142770	NP_001136242	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-2 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTTTAATTTTCTTTGGCTCTT	0.403										HNSCC(58;0.16)			45	231					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55582700	55582700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55582700C>T	uc001jju.1	-	33	5181	c.4786G>A	c.(4786-4788)GAT>AAT	p.D1596N	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.D1593N|PCDH15_uc010qhw.1_Missense_Mutation_p.D1556N|PCDH15_uc010qhx.1_Missense_Mutation_p.D1527N|PCDH15_uc010qhy.1_Missense_Mutation_p.D1603N|PCDH15_uc010qhz.1_Missense_Mutation_p.D1598N|PCDH15_uc010qia.1_Missense_Mutation_p.D1576N|PCDH15_uc010qib.1_Missense_Mutation_p.D1573N	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1596	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGCTGCAGATCTATGATCTCT	0.468										HNSCC(58;0.16)			16	173					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55719575	55719575	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55719575C>T	uc001jju.1	-	23	3434	c.3039G>A	c.(3037-3039)GAG>GAA	p.E1013E	PCDH15_uc010qhq.1_Silent_p.E1018E|PCDH15_uc010qhr.1_Silent_p.E1013E|PCDH15_uc010qhs.1_Silent_p.E1025E|PCDH15_uc010qht.1_Silent_p.E1020E|PCDH15_uc010qhu.1_Silent_p.E1013E|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.E1013E|PCDH15_uc010qhw.1_Silent_p.E976E|PCDH15_uc010qhx.1_Silent_p.E942E|PCDH15_uc010qhy.1_Silent_p.E1018E|PCDH15_uc010qhz.1_Silent_p.E1013E|PCDH15_uc010qia.1_Silent_p.E991E|PCDH15_uc010qib.1_Silent_p.E991E	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1013	Extracellular (Potential).|Cadherin 9.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACATCACAGGCTCCCCATCAT	0.398										HNSCC(58;0.16)			24	55					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55782877	55782877	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55782877G>A	uc001jju.1	-	19	2696	c.2301C>T	c.(2299-2301)TCC>TCT	p.S767S	PCDH15_uc010qhq.1_Silent_p.S772S|PCDH15_uc010qhr.1_Silent_p.S767S|PCDH15_uc010qhs.1_Silent_p.S779S|PCDH15_uc010qht.1_Silent_p.S774S|PCDH15_uc010qhu.1_Silent_p.S767S|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.S767S|PCDH15_uc010qhw.1_Silent_p.S730S|PCDH15_uc010qhx.1_Silent_p.S696S|PCDH15_uc010qhy.1_Silent_p.S772S|PCDH15_uc010qhz.1_Silent_p.S767S|PCDH15_uc010qia.1_Silent_p.S745S|PCDH15_uc010qib.1_Silent_p.S745S|PCDH15_uc001jjw.2_Silent_p.S767S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	767	Extracellular (Potential).|Cadherin 7.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGCTCCCATTGGATGTGATAC	0.393										HNSCC(58;0.16)			5	75					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55782888	55782888	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55782888G>A	uc001jju.1	-	19	2685	c.2290C>T	c.(2290-2292)CGT>TGT	p.R764C	PCDH15_uc010qhq.1_Missense_Mutation_p.R769C|PCDH15_uc010qhr.1_Missense_Mutation_p.R764C|PCDH15_uc010qhs.1_Missense_Mutation_p.R776C|PCDH15_uc010qht.1_Missense_Mutation_p.R771C|PCDH15_uc010qhu.1_Missense_Mutation_p.R764C|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.R764C|PCDH15_uc010qhw.1_Missense_Mutation_p.R727C|PCDH15_uc010qhx.1_Missense_Mutation_p.R693C|PCDH15_uc010qhy.1_Missense_Mutation_p.R769C|PCDH15_uc010qhz.1_Missense_Mutation_p.R764C|PCDH15_uc010qia.1_Missense_Mutation_p.R742C|PCDH15_uc010qib.1_Missense_Mutation_p.R742C|PCDH15_uc001jjw.2_Missense_Mutation_p.R764C	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	764	Extracellular (Potential).|Cadherin 7.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GATGTGATACGAAAAAGATTA	0.368										HNSCC(58;0.16)			18	47					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55912872	55912872	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55912872G>A	uc001jju.1	-	14	2167	c.1772C>T	c.(1771-1773)CCT>CTT	p.P591L	PCDH15_uc010qhq.1_Missense_Mutation_p.P596L|PCDH15_uc010qhr.1_Missense_Mutation_p.P591L|PCDH15_uc010qhs.1_Missense_Mutation_p.P603L|PCDH15_uc010qht.1_Missense_Mutation_p.P598L|PCDH15_uc010qhu.1_Missense_Mutation_p.P591L|PCDH15_uc001jjv.1_Missense_Mutation_p.P569L|PCDH15_uc010qhv.1_Missense_Mutation_p.P591L|PCDH15_uc010qhw.1_Missense_Mutation_p.P554L|PCDH15_uc010qhx.1_Missense_Mutation_p.P591L|PCDH15_uc010qhy.1_Missense_Mutation_p.P596L|PCDH15_uc010qhz.1_Missense_Mutation_p.P591L|PCDH15_uc010qia.1_Missense_Mutation_p.P569L|PCDH15_uc010qib.1_Missense_Mutation_p.P569L|PCDH15_uc001jjw.2_Missense_Mutation_p.P591L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	591	Cadherin 5.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TCGCTCTGCAGGAGGAGCATT	0.453										HNSCC(58;0.16)			14	54					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55955503	55955503	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:55955503C>T	uc001jju.1	-	11	1640	c.1245G>A	c.(1243-1245)TCG>TCA	p.S415S	PCDH15_uc010qhq.1_Silent_p.S420S|PCDH15_uc010qhr.1_Silent_p.S415S|PCDH15_uc010qhs.1_Silent_p.S420S|PCDH15_uc010qht.1_Silent_p.S415S|PCDH15_uc010qhu.1_Silent_p.S415S|PCDH15_uc001jjv.1_Silent_p.S393S|PCDH15_uc010qhv.1_Silent_p.S415S|PCDH15_uc010qhw.1_Silent_p.S378S|PCDH15_uc010qhx.1_Silent_p.S415S|PCDH15_uc010qhy.1_Silent_p.S420S|PCDH15_uc010qhz.1_Silent_p.S415S|PCDH15_uc010qia.1_Silent_p.S393S|PCDH15_uc010qib.1_Silent_p.S393S|PCDH15_uc001jjw.2_Silent_p.S415S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	415	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGAGACTGTCCGAAATGGTTG	0.368										HNSCC(58;0.16)			31	77					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	56089453	56089453	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:56089453G>A	uc001jju.1	-	7	1003	c.608C>T	c.(607-609)ACC>ATC	p.T203I	PCDH15_uc010qhq.1_Missense_Mutation_p.T208I|PCDH15_uc010qhr.1_Missense_Mutation_p.T203I|PCDH15_uc010qhs.1_Missense_Mutation_p.T208I|PCDH15_uc010qht.1_Missense_Mutation_p.T203I|PCDH15_uc010qhu.1_Missense_Mutation_p.T203I|PCDH15_uc001jjv.1_Missense_Mutation_p.T181I|PCDH15_uc010qhv.1_Missense_Mutation_p.T203I|PCDH15_uc010qhw.1_Intron|PCDH15_uc010qhx.1_Missense_Mutation_p.T203I|PCDH15_uc010qhy.1_Missense_Mutation_p.T208I|PCDH15_uc010qhz.1_Missense_Mutation_p.T203I|PCDH15_uc010qia.1_Missense_Mutation_p.T181I|PCDH15_uc010qib.1_Missense_Mutation_p.T181I|PCDH15_uc001jjw.2_Missense_Mutation_p.T203I	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	203	Extracellular (Potential).|Cadherin 2.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				AATTTCAAAGGTGTCATTGGA	0.328										HNSCC(58;0.16)			64	135					0	0	1	0	0
IPMK	253430	broad.mit.edu	37	10	59956189	59956189	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:59956189G>A	uc001jkb.2	-	6	1222	c.899C>T	c.(898-900)TCC>TTC	p.S300F		NM_152230	NP_689416	Q8NFU5	IPMK_HUMAN	inositol polyphosphate multikinase	300						nucleus	ATP binding|inositol trisphosphate 6-kinase activity			ovary(1)	1						ATTAGCTGTGGAACTTAACAC	0.368													27	123					0	0	1	0	0
BICC1	80114	broad.mit.edu	37	10	60549101	60549102	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:60549101_60549102CT>TC	uc001jki.1	+	7	680_681	c.680_681CT>TC	c.(679-681)TCT>TTC	p.S227F		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	227					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						AATTCCCCCTCTATTCAGCATA	0.401													44	98					0	0	1	0	0
BICC1	80114	broad.mit.edu	37	10	60558971	60558971	+	Missense_Mutation	SNP	G	A	A	rs141490536	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:60558971G>A	uc001jki.1	+	12	1684	c.1684G>A	c.(1684-1686)GAA>AAA	p.E562K	BICC1_uc001jkj.1_Missense_Mutation_p.E203K	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	562					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						TATGCAGACCGAAGGCAAAAA	0.468													7	23					0	0	1	0	0
BICC1	80114	broad.mit.edu	37	10	60562911	60562911	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:60562911G>A	uc001jki.1	+	15	2090	c.2090G>A	c.(2089-2091)GGG>GAG	p.G697E	BICC1_uc001jkj.1_Missense_Mutation_p.G338E	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	697					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						AAGGCTCCAGGGAGTGAGCGC	0.532													11	63					0	0	1	0	0
BICC1	80114	broad.mit.edu	37	10	60562913	60562913	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:60562913A>T	uc001jki.1	+	15	2092	c.2092A>T	c.(2092-2094)AGT>TGT	p.S698C	BICC1_uc001jkj.1_Missense_Mutation_p.S339C	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	698					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						GGCTCCAGGGAGTGAGCGCGC	0.532													11	61					0	0	1	0	0
PHYHIPL	84457	broad.mit.edu	37	10	60994167	60994167	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:60994167G>A	uc001jkk.3	+	2	476	c.210G>A	c.(208-210)TGG>TGA	p.W70*	PHYHIPL_uc001jkl.3_Nonsense_Mutation_p.W24*|PHYHIPL_uc001jkm.3_Nonsense_Mutation_p.W44*	NM_032439	NP_115815	Q96FC7	PHIPL_HUMAN	phytanoyl-CoA 2-hydroxylase interacting	70	Fibronectin type-III.										0						AGATTTCATGGGAAATGGATT	0.338													17	86					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61028342	61028342	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61028342C>T	uc001jkn.2	-	9	1047	c.913G>A	c.(913-915)GAA>AAA	p.E305K	FAM13C_uc001jko.2_Missense_Mutation_p.E305K|FAM13C_uc010qid.1_Missense_Mutation_p.E222K|FAM13C_uc010qie.1_Missense_Mutation_p.E222K|FAM13C_uc010qif.1_Missense_Mutation_p.E327K|FAM13C_uc001jkp.2_Missense_Mutation_p.E222K	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	305										ovary(2)	2						TCAAATTTTTCTTCAAATTTC	0.493													19	55					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61028352	61028352	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61028352C>T	uc001jkn.2	-	9	1037	c.903G>A	c.(901-903)CGG>CGA	p.R301R	FAM13C_uc001jko.2_Silent_p.R301R|FAM13C_uc010qid.1_Silent_p.R218R|FAM13C_uc010qie.1_Silent_p.R218R|FAM13C_uc010qif.1_Silent_p.R323R|FAM13C_uc001jkp.2_Silent_p.R218R	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	301										ovary(2)	2						CTTCAAATTTCCGAATTTTCC	0.507													23	49					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61115696	61115696	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61115696C>T	uc001jkn.2	-	3	204	c.70G>A	c.(70-72)GAA>AAA	p.E24K	FAM13C_uc001jko.2_Missense_Mutation_p.E24K|FAM13C_uc010qid.1_5'UTR|FAM13C_uc010qie.1_5'UTR|FAM13C_uc010qif.1_Missense_Mutation_p.E46K	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	24										ovary(2)	2						ACTGGATCTTCGTCACACCTG	0.413													26	61					0	0	1	0	0
SLC16A9	220963	broad.mit.edu	37	10	61413644	61413644	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61413644G>A	uc010qig.1	-	5	1589	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	380	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						GGCCCATGATGATTAAGGTAG	0.418													42	82					0	0	1	0	0
SLC16A9	220963	broad.mit.edu	37	10	61414214	61414215	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61414214_61414215GG>AA	uc010qig.1	-	5	1018_1019	c.569_570CC>TT	c.(568-570)CCC>CTT	p.P190L		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	190	Extracellular (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						AAGATTGGAGGGGTCTCATCAG	0.406													43	112					0	0	1	0	0
SLC16A9	220963	broad.mit.edu	37	10	61424021	61424021	+	Missense_Mutation	SNP	C	T	T	rs145829924		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61424021C>T	uc010qig.1	-	4	849	c.400G>A	c.(400-402)GAT>AAT	p.D134N		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	134	Extracellular (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						CCTCGGCGATCGTCAAAATAC	0.393													27	53					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61802491	61802491	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61802491C>T	uc001jky.2	-	43	13284	c.13092G>A	c.(13090-13092)ACG>ACA	p.T4364T	ANK3_uc001jkw.2_Silent_p.T988T|ANK3_uc009xpa.2_Silent_p.T987T|ANK3_uc001jkx.2_Silent_p.T1031T|ANK3_uc010qih.1_Silent_p.T1855T|ANK3_uc001jkz.3_Silent_p.T1848T|ANK3_uc001jkv.2_Silent_p.T387T	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4364					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTCTTTCTTCGTTTTCACCT	0.398													49	145					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61822884	61822884	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61822884G>A	uc001jky.2	-	40	12772	c.12580C>T	c.(12580-12582)CAT>TAT	p.H4194Y	ANK3_uc001jkw.2_Missense_Mutation_p.H715Y|ANK3_uc009xpa.2_Missense_Mutation_p.H715Y|ANK3_uc001jkx.2_Missense_Mutation_p.H759Y|ANK3_uc010qih.1_Missense_Mutation_p.H1582Y|ANK3_uc001jkz.3_Missense_Mutation_p.H1575Y|ANK3_uc001jkv.2_Missense_Mutation_p.H114Y	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4194					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACAGGGTCATGGAAAACATTG	0.328													8	27					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61828486	61828486	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61828486C>T	uc001jky.2	-	37	12345	c.12153G>A	c.(12151-12153)ACG>ACA	p.T4051T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4051					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TAGCAGACTTCGTTGTAACCG	0.478													66	166					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61828635	61828635	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61828635C>T	uc001jky.2	-	37	12196	c.12004G>A	c.(12004-12006)GGA>AGA	p.G4002R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4002					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCACTAATTCCCTTAAAATAT	0.338													65	146					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61829395	61829395	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61829395C>T	uc001jky.2	-	37	11436	c.11244G>A	c.(11242-11244)GTG>GTA	p.V3748V	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3748					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AACTGGTCATCACCGCTTCTA	0.418													60	156					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61831246	61831246	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61831246G>A	uc001jky.2	-	37	9585	c.9393C>T	c.(9391-9393)ACC>ACT	p.T3131T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3131					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTGTATAAAAGGTCCCCCTGG	0.408													43	184					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61831429	61831429	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61831429G>A	uc001jky.2	-	37	9402	c.9210C>T	c.(9208-9210)CCC>CCT	p.P3070P	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3070					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ATCCATCAATGGGACTGTGGT	0.468													40	139					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61831698	61831698	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61831698C>T	uc001jky.2	-	37	9133	c.8941G>A	c.(8941-8943)GAA>AAA	p.E2981K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2981					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCCGACTGTTCACAAAAACCA	0.438													28	61					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61831800	61831800	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61831800G>A	uc001jky.2	-	37	9031	c.8839C>T	c.(8839-8841)CAG>TAG	p.Q2947*	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2947					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTGGAAGGCTGATCAAGCAAT	0.443													30	71					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61832027	61832027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61832027G>A	uc001jky.2	-	37	8804	c.8612C>T	c.(8611-8613)TCG>TTG	p.S2871L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2871					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AAGTACATGCGAAAGTTTTTC	0.398													34	88					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61832220	61832220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61832220C>T	uc001jky.2	-	37	8611	c.8419G>A	c.(8419-8421)GAT>AAT	p.D2807N	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2807					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTCACATTATCAGAGCCAGAA	0.373													36	78					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61832380	61832380	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61832380C>T	uc001jky.2	-	37	8451	c.8259G>A	c.(8257-8259)GAG>GAA	p.E2753E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2753					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTAGCTTGCTCTCCTGTATTT	0.403													48	132					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61832614	61832614	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61832614C>T	uc001jky.2	-	37	8217	c.8025G>A	c.(8023-8025)AAG>AAA	p.K2675K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2675					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGAGAACCATCTTCTCTGGGC	0.557													25	79					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61832883	61832883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61832883C>T	uc001jky.2	-	37	7948	c.7756G>A	c.(7756-7758)GAA>AAA	p.E2586K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2586					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTCAGTTTTTCTTCAGCCTCC	0.433													44	93					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61833477	61833477	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61833477C>T	uc001jky.2	-	37	7354	c.7162G>A	c.(7162-7164)GAA>AAA	p.E2388K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2388					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGACCCTGTTCCTCTGAACAA	0.398													79	32					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61833793	61833794	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61833793_61833794GG>AA	uc001jky.2	-	37	7037_7038	c.6845_6846CC>TT	c.(6844-6846)TCC>TTT	p.S2282F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2282					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GATCCCGCCCGGACTGAAAGGC	0.495													14	189					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61833963	61833963	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61833963C>T	uc001jky.2	-	37	6868	c.6676G>A	c.(6676-6678)GAA>AAA	p.E2226K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2226					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCATCTTCTTCACTACTGGCT	0.408													31	136					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61834025	61834025	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61834025G>A	uc001jky.2	-	37	6806	c.6614C>T	c.(6613-6615)CCA>CTA	p.P2205L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2205					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGTGGGCTTTGGTTCCAATTC	0.448													33	94					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61834329	61834329	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61834329C>T	uc001jky.2	-	37	6502	c.6310G>A	c.(6310-6312)GGA>AGA	p.G2104R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2104					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTATCTGTTCCAAAAAAGGAA	0.408													31	88					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61834595	61834595	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61834595C>T	uc001jky.2	-	37	6236	c.6044G>A	c.(6043-6045)AGA>AAA	p.R2015K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2015					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TACTTGCACTCTCTCTGGCAG	0.443													26	115					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61835772	61835772	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61835772G>A	uc001jky.2	-	37	5059	c.4867C>T	c.(4867-4869)CGA>TGA	p.R1623*	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1623	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGAGAGGTTCGAGAGGAAAAC	0.478													30	89					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61843269	61843269	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61843269C>T	uc001jky.2	-	33	4373	c.4181G>A	c.(4180-4182)AGA>AAA	p.R1394K	ANK3_uc001jkw.2_Missense_Mutation_p.R528K|ANK3_uc009xpa.2_Missense_Mutation_p.R528K|ANK3_uc001jkx.2_Missense_Mutation_p.R572K|ANK3_uc010qih.1_Missense_Mutation_p.R1395K|ANK3_uc001jkz.3_Missense_Mutation_p.R1388K|ANK3_uc001jla.1_Missense_Mutation_p.R460K|ANK3_uc001jkv.2_5'Flank|ANK3_uc009xpb.1_5'Flank|ANK3_uc009xpc.1_5'Flank	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1394					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AAATGGCAGTCTATTTTCTTT	0.303													16	72					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61843365	61843366	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61843365_61843366CC>TT	uc001jky.2	-	33	4276_4277	c.4084_4085GG>AA	c.(4084-4086)GGA>AAA	p.G1362K	ANK3_uc001jkw.2_Missense_Mutation_p.G496K|ANK3_uc009xpa.2_Missense_Mutation_p.G496K|ANK3_uc001jkx.2_Missense_Mutation_p.G540K|ANK3_uc010qih.1_Missense_Mutation_p.G1363K|ANK3_uc001jkz.3_Missense_Mutation_p.G1356K|ANK3_uc001jla.1_Missense_Mutation_p.G428K|ANK3_uc001jkv.2_5'Flank|ANK3_uc009xpb.1_5'Flank|ANK3_uc009xpc.1_5'Flank	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1362					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AATAGGTTTTCCTTCCAGAACC	0.297													23	65					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61844389	61844389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61844389C>T	uc001jky.2	-	32	4237	c.4045G>A	c.(4045-4047)GAG>AAG	p.E1349K	ANK3_uc001jkw.2_Missense_Mutation_p.E483K|ANK3_uc009xpa.2_Missense_Mutation_p.E483K|ANK3_uc001jkx.2_Missense_Mutation_p.E527K|ANK3_uc010qih.1_Missense_Mutation_p.E1350K|ANK3_uc001jkz.3_Missense_Mutation_p.E1343K|ANK3_uc001jla.1_Missense_Mutation_p.E415K|ANK3_uc001jlb.1_Missense_Mutation_p.E867K|ANK3_uc001jkv.2_5'Flank	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1349					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCGACTTCCTCAAAATTCTCT	0.363													46	128					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61844941	61844941	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61844941G>A	uc001jky.2	-	31	4011	c.3819C>T	c.(3817-3819)GTC>GTT	p.V1273V	ANK3_uc001jkw.2_Silent_p.V407V|ANK3_uc009xpa.2_Silent_p.V407V|ANK3_uc001jkx.2_Silent_p.V451V|ANK3_uc010qih.1_Silent_p.V1274V|ANK3_uc001jkz.3_Silent_p.V1267V|ANK3_uc001jla.1_Silent_p.V339V|ANK3_uc001jlb.1_Silent_p.V791V|ANK3_uc001jkv.2_5'Flank	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1273					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTGTAAAGGAGACACAATCTT	0.383													28	87					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61847951	61847951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61847951G>A	uc001jky.2	-	29	3686	c.3494C>T	c.(3493-3495)TCT>TTT	p.S1165F	ANK3_uc001jkw.2_Missense_Mutation_p.S299F|ANK3_uc009xpa.2_Missense_Mutation_p.S299F|ANK3_uc001jkx.2_Missense_Mutation_p.S343F|ANK3_uc010qih.1_Missense_Mutation_p.S1166F|ANK3_uc001jkz.3_Missense_Mutation_p.S1159F|ANK3_uc001jla.1_Missense_Mutation_p.S231F|ANK3_uc001jlb.1_Missense_Mutation_p.S683F	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1165					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTCTGGGAAAGATGCTTGAAC	0.488													31	132					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61848064	61848064	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61848064C>T	uc001jky.2	-	29	3573	c.3381G>A	c.(3379-3381)ACG>ACA	p.T1127T	ANK3_uc001jkw.2_Silent_p.T261T|ANK3_uc009xpa.2_Silent_p.T261T|ANK3_uc001jkx.2_Silent_p.T305T|ANK3_uc010qih.1_Silent_p.T1128T|ANK3_uc001jkz.3_Silent_p.T1121T|ANK3_uc001jla.1_Silent_p.T193T|ANK3_uc001jlb.1_Silent_p.T645T	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1127					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGAAATCTTTCGTGATAATCC	0.438													29	98					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61848091	61848091	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61848091C>T	uc001jky.2	-	29	3546	c.3354G>A	c.(3352-3354)GGG>GGA	p.G1118G	ANK3_uc001jkw.2_Silent_p.G252G|ANK3_uc009xpa.2_Silent_p.G252G|ANK3_uc001jkx.2_Silent_p.G296G|ANK3_uc010qih.1_Silent_p.G1119G|ANK3_uc001jkz.3_Silent_p.G1112G|ANK3_uc001jla.1_Silent_p.G184G|ANK3_uc001jlb.1_Silent_p.G636G	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1118					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TACGCTTTTTCCCTAACTCTT	0.393													9	98					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61865750	61865750	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61865750G>A	uc001jky.2	-	28	3433	c.3241C>T	c.(3241-3243)CGA>TGA	p.R1081*	ANK3_uc001jkw.2_Nonsense_Mutation_p.R215*|ANK3_uc009xpa.2_Nonsense_Mutation_p.R215*|ANK3_uc001jkx.2_Nonsense_Mutation_p.R259*|ANK3_uc010qih.1_Nonsense_Mutation_p.R1082*|ANK3_uc001jkz.3_Nonsense_Mutation_p.R1075*|ANK3_uc001jla.1_Nonsense_Mutation_p.R147*|ANK3_uc001jlb.1_Nonsense_Mutation_p.R599*	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1081	ZU5.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTTCACTTCGAAGAACAATG	0.383													14	62					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61868589	61868589	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61868589C>T	uc001jky.2	-	27	3364	c.3172G>A	c.(3172-3174)GGC>AGC	p.G1058S	ANK3_uc001jkw.2_Missense_Mutation_p.G192S|ANK3_uc009xpa.2_Missense_Mutation_p.G192S|ANK3_uc001jkx.2_Missense_Mutation_p.G236S|ANK3_uc010qih.1_Missense_Mutation_p.G1059S|ANK3_uc001jkz.3_Missense_Mutation_p.G1052S|ANK3_uc001jla.1_Missense_Mutation_p.G124S|ANK3_uc001jlb.1_Missense_Mutation_p.G576S	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1058	ZU5.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACAACTTACCCTAAAAATTGT	0.438													8	51					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61894123	61894123	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61894123G>A	uc001jky.2	-	25	2939	c.2747C>T	c.(2746-2748)TCC>TTC	p.S916F	ANK3_uc001jkw.2_Missense_Mutation_p.S50F|ANK3_uc009xpa.2_Missense_Mutation_p.S50F|ANK3_uc001jkx.2_Missense_Mutation_p.S94F|ANK3_uc010qih.1_Missense_Mutation_p.S917F|ANK3_uc001jkz.3_Missense_Mutation_p.S910F|ANK3_uc001jla.1_5'Flank|ANK3_uc001jlb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	916					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CGAACTGAAGGAGCGGAGGCT	0.418													12	28					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61932087	61932087	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61932087G>A	uc001jky.2	-	21	2649	c.2457C>T	c.(2455-2457)ACC>ACT	p.T819T	ANK3_uc001jkx.2_5'UTR|ANK3_uc010qih.1_Silent_p.T802T|ANK3_uc001jkz.3_Silent_p.T813T|ANK3_uc001jlb.1_Silent_p.T348T|ANK3_uc001jlc.1_Silent_p.T480T	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	819	ANK 23.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGGTCTCTTCGGTCACTATCT	0.483													19	75					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61941113	61941113	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61941113C>T	uc001jky.2	-	18	2350	c.2158G>A	c.(2158-2160)GGG>AGG	p.G720R	ANK3_uc010qih.1_Missense_Mutation_p.G703R|ANK3_uc001jkz.3_Missense_Mutation_p.G714R|ANK3_uc001jlb.1_Missense_Mutation_p.G249R|ANK3_uc001jlc.1_Missense_Mutation_p.G381R	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	720	ANK 20.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACATGAGCCCCTTGGTTTACG	0.498													36	143					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61941141	61941141	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61941141C>T	uc001jky.2	-	18	2322	c.2130G>A	c.(2128-2130)GTG>GTA	p.V710V	ANK3_uc010qih.1_Silent_p.V693V|ANK3_uc001jkz.3_Silent_p.V704V|ANK3_uc001jlb.1_Silent_p.V239V|ANK3_uc001jlc.1_Silent_p.V371V	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	710	ANK 20.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTGCCACATTCACTCGATCTT	0.517													45	103					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61962822	61962822	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61962822C>T	uc001jky.2	-	12	1522	c.1330G>A	c.(1330-1332)GGG>AGG	p.G444R	ANK3_uc010qih.1_Missense_Mutation_p.G427R|ANK3_uc001jkz.3_Missense_Mutation_p.G438R|ANK3_uc001jlb.1_5'UTR|ANK3_uc001jlc.1_Missense_Mutation_p.G105R	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	444	ANK 12.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTACATGCCCCATGAAGGCA	0.433													16	59					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61962829	61962829	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:61962829G>A	uc001jky.2	-	12	1515	c.1323C>T	c.(1321-1323)GCC>GCT	p.A441A	ANK3_uc010qih.1_Silent_p.A424A|ANK3_uc001jkz.3_Silent_p.A435A|ANK3_uc001jlb.1_5'UTR|ANK3_uc001jlc.1_Silent_p.A102A	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	441	ANK 12.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCCCCATGAAGGCAGCAACAT	0.443													29	51					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	62029974	62029974	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:62029974G>A	uc001jky.2	-	5	620	c.428C>T	c.(427-429)CCA>CTA	p.P143L	ANK3_uc010qih.1_Missense_Mutation_p.P126L|ANK3_uc001jkz.3_Missense_Mutation_p.P137L|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	143	ANK 3.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CATATACAATGGCGTGAAACC	0.403													12	36					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	62038627	62038627	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:62038627C>T	uc001jky.2	-	4	511	c.319G>A	c.(319-321)GGA>AGA	p.G107R	ANK3_uc010qih.1_Missense_Mutation_p.G90R|ANK3_uc001jkz.3_Missense_Mutation_p.G101R|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	107	ANK 2.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCTGTGTTTCCTTTCTGTGAA	0.383													35	105					0	0	1	0	0
CDK1	983	broad.mit.edu	37	10	62552004	62552004	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:62552004C>T	uc001jld.2	+	7	886	c.752C>T	c.(751-753)TCC>TTC	p.S251F	CDK1_uc001jle.2_RNA|CDK1_uc001jlf.2_Missense_Mutation_p.S251F|CDK1_uc001jlg.2_Missense_Mutation_p.S194F	NM_001786	NP_001777	P06493	CDK1_HUMAN	cell division cycle 2 isoform 1	251	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|axon guidance|cell division|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|mitosis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein localization to kinetochore|Ras protein signal transduction|regulation of transcription involved in G1/S phase of mitotic cell cycle|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|midbody|nucleoplasm|spindle microtubule	ATP binding|cyclin-dependent protein kinase activity|RNA polymerase II carboxy-terminal domain kinase activity			ovary(1)	1						AGCCTAGCATCCCATGTCAAA	0.403													27	53					0	0	1	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62647983	62647983	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:62647983C>T	uc001jli.2	-	7	1881	c.1443G>A	c.(1441-1443)AAG>AAA	p.K481K	RHOBTB1_uc001jlh.2_Silent_p.K481K|RHOBTB1_uc001jlj.2_Silent_p.K481K|RHOBTB1_uc001jlk.2_Silent_p.K481K|RHOBTB1_uc009xpe.1_Silent_p.K419K|RHOBTB1_uc001jll.2_Silent_p.K231K	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	481					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					AGAACGTTCCCTTGCTGAGAC	0.463													15	30					0	0	1	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62648700	62648700	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:62648700G>A	uc001jli.2	-	7	1164	c.726C>T	c.(724-726)GTC>GTT	p.V242V	RHOBTB1_uc001jlh.2_Silent_p.V242V|RHOBTB1_uc001jlj.2_Silent_p.V242V|RHOBTB1_uc001jlk.2_Silent_p.V242V|RHOBTB1_uc009xpe.1_Silent_p.V180V|RHOBTB1_uc001jll.2_5'UTR	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	242					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					GAATTTTGATGACCGGTGGAG	0.498													19	169					0	0	1	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62652709	62652709	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:62652709G>A	uc001jli.2	-	6	779	c.341C>T	c.(340-342)TCC>TTC	p.S114F	RHOBTB1_uc001jlh.2_Missense_Mutation_p.S114F|RHOBTB1_uc001jlj.2_Missense_Mutation_p.S114F|RHOBTB1_uc001jlk.2_Missense_Mutation_p.S114F|RHOBTB1_uc009xpe.1_Intron	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	114	Rho-like.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					ATGATTTAGGGAATTGGGATT	0.408													30	110					0	0	1	0	0
TMEM26	219623	broad.mit.edu	37	10	63173294	63173294	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:63173294C>T	uc001jlo.2	-	5	975	c.606_splice	c.e5-1	p.R202_splice	TMEM26_uc010qij.1_Splice_Site|TMEM26_uc001jlq.2_RNA|TMEM26_uc001jlp.1_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26							integral to membrane					0	Prostate(12;0.0112)					AGGACTATTCCTAGAATACAG	0.363													19	43					0	0	1	0	0
C10orf107	219621	broad.mit.edu	37	10	63519931	63519931	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:63519931G>A	uc010qik.1	+	5	708	c.403G>A	c.(403-405)GAA>AAA	p.E135K		NM_173554	NP_775825	Q8IVU9	CJ107_HUMAN	hypothetical protein LOC219621	135											0	Prostate(12;0.016)					ATTGGATACGGAAATGAAGGT	0.383													18	70					0	0	1	0	0
ARID5B	84159	broad.mit.edu	37	10	63700140	63700140	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:63700140G>A	uc001jlt.1	+	3	501	c.475G>A	c.(475-477)GAC>AAC	p.D159N	ARID5B_uc010qil.1_Missense_Mutation_p.D159N	NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	159					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					CAACTTCAAAGACGTTCTCAA	0.438													5	26					0	0	1	0	0
ARID5B	84159	broad.mit.edu	37	10	63851848	63851848	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:63851848C>T	uc001jlt.1	+	10	2652	c.2626C>T	c.(2626-2628)CAA>TAA	p.Q876*		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	876					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					CCACAGACACCAAGAAAAGCT	0.483													37	113					0	0	1	0	0
ARID5B	84159	broad.mit.edu	37	10	63852307	63852307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:63852307C>T	uc001jlt.1	+	10	3111	c.3085C>T	c.(3085-3087)CGG>TGG	p.R1029W		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	1029					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					GAAAAAGGCCCGGGCAGTGTC	0.597													29	112					0	0	1	0	0
ZNF365	22891	broad.mit.edu	37	10	64136112	64136112	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:64136112G>A	uc001jmc.2	+	2	475	c.160G>A	c.(160-162)GAA>AAA	p.E54K	ZNF365_uc001jly.3_Missense_Mutation_p.E69K|ZNF365_uc001jmb.3_Missense_Mutation_p.E54K|ZNF365_uc001jlz.3_Missense_Mutation_p.E54K|ZNF365_uc001jma.3_Intron	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					TCACAGCTACGAAGAAAGAAC	0.498													8	31					0	0	1	0	0
ZNF365	22891	broad.mit.edu	37	10	64159417	64159417	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:64159417G>A	uc001jly.3	+	5	1200	c.1138G>A	c.(1138-1140)GAA>AAA	p.E380K	ZNF365_uc001jmb.3_Intron|ZNF365_uc001jmc.2_Intron|ZNF365_uc001jlz.3_Missense_Mutation_p.E365K|ZNF365_uc001jma.3_RNA	NM_014951	NP_055766	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform A	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					GGCCATTCACGAACAGGCTGA	0.547													22	180					0	0	1	0	0
EGR2	1959	broad.mit.edu	37	10	64573977	64573977	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:64573977G>A	uc010qim.1	-	3	575	c.421C>T	c.(421-423)CCC>TCC	p.P141S	EGR2_uc010qin.1_Missense_Mutation_p.P91S|EGR2_uc001jmi.2_Missense_Mutation_p.P141S|EGR2_uc010qio.1_Missense_Mutation_p.P154S|EGR2_uc009xph.2_Missense_Mutation_p.P141S	NM_001136177	NP_001129649	P11161	EGR2_HUMAN	early growth response 2 protein isoform a	141					fat cell differentiation|protein export from nucleus|transcription from RNA polymerase II promoter	cytoplasm|nucleus	chromatin binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					AGTGGGTTGGGGGAGGCAGAG	0.597													15	61					0	0	1	0	0
JMJD1C	221037	broad.mit.edu	37	10	64973550	64973550	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:64973550G>A	uc001jmn.2	-	8	2677	c.2377C>T	c.(2377-2379)CCT>TCT	p.P793S	JMJD1C_uc001jml.2_Missense_Mutation_p.P574S|JMJD1C_uc001jmm.2_Missense_Mutation_p.P505S|JMJD1C_uc010qiq.1_Missense_Mutation_p.P611S|JMJD1C_uc009xpi.2_Missense_Mutation_p.P611S|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmp.1_Missense_Mutation_p.P505S	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	793					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					AGTAAATGAGGGTGATGAACA	0.507													15	30					0	0	1	0	0
JMJD1C	221037	broad.mit.edu	37	10	64974679	64974679	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:64974679G>A	uc001jmn.2	-	8	1548	c.1248C>T	c.(1246-1248)CCC>CCT	p.P416P	JMJD1C_uc001jml.2_Silent_p.P197P|JMJD1C_uc001jmm.2_Silent_p.P128P|JMJD1C_uc010qiq.1_Silent_p.P234P|JMJD1C_uc009xpi.2_Silent_p.P234P|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmp.1_Silent_p.P128P	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	416					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					CATTATTATGGGGTTTTCCTT	0.348													18	57					0	0	1	0	0
ANXA2P3	305	broad.mit.edu	37	10	66585344	66585344	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:66585344G>A	uc009xpm.1	+	1		c.60G>A				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						TACTATTTACGAAATCCTGTG	0.488													7	13					0	0	1	0	0
ANXA2P3	305	broad.mit.edu	37	10	66585916	66585916	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:66585916G>A	uc009xpm.1	+	1		c.632G>A				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						AGATGCCCGGGATTTCTGTGA	0.463													13	25					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	67726390	67726390	+	Missense_Mutation	SNP	C	T	T	rs145119798	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:67726390C>T	uc009xpn.1	-	17	2503	c.2380G>A	c.(2380-2382)GGA>AGA	p.G794R	CTNNA3_uc001jmw.2_Missense_Mutation_p.G794R	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	794					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						ATGAGCTCTCCTCCCAGGTTC	0.448													37	94					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68280418	68280418	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:68280418G>A	uc009xpn.1	-	11	1611	c.1488C>T	c.(1486-1488)GCC>GCT	p.A496A	CTNNA3_uc001jmw.2_Silent_p.A496A|CTNNA3_uc001jmx.3_Silent_p.A496A	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	496					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TGTCATCTACGGCTTCAGTGA	0.358													41	77					0	0	1	0	0
LRRTM3	347731	broad.mit.edu	37	10	68686806	68686806	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:68686806G>A	uc001jmz.1	+	2	682	c.132G>A	c.(130-132)ATG>ATA	p.M44I	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.M44I	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	44	Extracellular (Potential).|LRRNT.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AAGGCAAAATGGTATATTGTG	0.443													24	53					0	0	1	0	0
LRRTM3	347731	broad.mit.edu	37	10	68686993	68686993	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:68686993G>A	uc001jmz.1	+	2	869	c.319G>A	c.(319-321)GGA>AGA	p.G107R	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.G107R	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	107	Extracellular (Potential).|LRR 2.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TGCTTTTAATGGAATACGCAG	0.358													37	153					0	0	1	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687851	68687851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:68687851C>T	uc001jmz.1	+	2	1727	c.1177C>T	c.(1177-1179)CCC>TCC	p.P393S	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.P393S	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	393	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TGAGAGCAAACCCCCTTTGCC	0.597													23	74					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940104	68940104	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:68940104G>A	uc009xpn.1	-	7	1141	c.1018C>T	c.(1018-1020)CAG>TAG	p.Q340*	CTNNA3_uc001jmw.2_Nonsense_Mutation_p.Q340*|CTNNA3_uc001jmx.3_Nonsense_Mutation_p.Q340*|CTNNA3_uc009xpo.1_Nonsense_Mutation_p.Q200*|CTNNA3_uc001jna.2_Nonsense_Mutation_p.Q352*	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	340	Potential.				cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AGCAGATCCTGAAGAGCCTGG	0.502													18	63					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940198	68940198	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:68940198G>A	uc009xpn.1	-	7	1047	c.924C>T	c.(922-924)ATC>ATT	p.I308I	CTNNA3_uc001jmw.2_Silent_p.I308I|CTNNA3_uc001jmx.3_Silent_p.I308I|CTNNA3_uc009xpo.1_Silent_p.I168I|CTNNA3_uc001jna.2_Silent_p.I320I	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	308					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						CAGCCCCACTGATAATGGCTT	0.478													25	60					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	69281668	69281668	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:69281668G>A	uc009xpn.1	-	5	634	c.511C>T	c.(511-513)CAG>TAG	p.Q171*	CTNNA3_uc001jmw.2_Nonsense_Mutation_p.Q171*|CTNNA3_uc001jmx.3_Nonsense_Mutation_p.Q171*|CTNNA3_uc009xpo.1_Nonsense_Mutation_p.Q31*|CTNNA3_uc001jna.2_Nonsense_Mutation_p.Q183*	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	171					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TAGGTTTTCTGGAGGTCAGAT	0.408													36	88					0	0	1	0	0
MYPN	84665	broad.mit.edu	37	10	69881562	69881562	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:69881562C>T	uc001jnm.3	+	3	552	c.367C>T	c.(367-369)CGA>TGA	p.R123*	MYPN_uc001jnl.1_Nonsense_Mutation_p.R123*|MYPN_uc001jnn.3_Intron|MYPN_uc001jno.3_Nonsense_Mutation_p.R123*|MYPN_uc001jnp.1_Nonsense_Mutation_p.R123*|MYPN_uc009xps.2_Nonsense_Mutation_p.R123*|MYPN_uc009xpt.2_Nonsense_Mutation_p.R123*|MYPN_uc010qit.1_5'UTR|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	123	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						GGATAACCCTCGAAGTCCCAC	0.433													6	67					0	0	1	0	0
MYPN	84665	broad.mit.edu	37	10	69881775	69881775	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:69881775G>A	uc001jnm.3	+	3	765	c.580G>A	c.(580-582)GAA>AAA	p.E194K	MYPN_uc001jnl.1_Missense_Mutation_p.E194K|MYPN_uc001jnn.3_Intron|MYPN_uc001jno.3_Missense_Mutation_p.E194K|MYPN_uc001jnp.1_Missense_Mutation_p.E194K|MYPN_uc009xps.2_Missense_Mutation_p.E194K|MYPN_uc009xpt.2_Missense_Mutation_p.E194K|MYPN_uc010qit.1_5'UTR|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	194	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						AGTTATGCAGGAAAACAGCTC	0.448													21	74					0	0	1	0	0
MYPN	84665	broad.mit.edu	37	10	69935090	69935090	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:69935090G>A	uc001jnm.3	+	13	2760	c.2575G>A	c.(2575-2577)GGA>AGA	p.G859R	MYPN_uc001jnn.3_Missense_Mutation_p.G584R|MYPN_uc001jno.3_Missense_Mutation_p.G859R|MYPN_uc009xpt.2_Missense_Mutation_p.G859R|MYPN_uc010qit.1_Missense_Mutation_p.G565R|MYPN_uc010qiu.1_Intron	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	859						nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						GCCATCCCAGGGATTAGCGAA	0.423													21	35					0	0	1	0	0
MYPN	84665	broad.mit.edu	37	10	69961741	69961741	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:69961741G>A	uc001jnm.3	+	19	3834	c.3649G>A	c.(3649-3651)GAG>AAG	p.E1217K	MYPN_uc001jnn.3_Missense_Mutation_p.E942K|MYPN_uc001jno.3_Missense_Mutation_p.E1217K|MYPN_uc009xpt.2_Missense_Mutation_p.E1217K|MYPN_uc010qit.1_Missense_Mutation_p.E923K|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	1217	Interaction with ACTN.|Ig-like 5.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						TTGCACCAGAGAGAGGATCAG	0.537													45	108					0	0	1	0	0
PBLD	64081	broad.mit.edu	37	10	70044033	70044033	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70044033G>A	uc001jns.1	-	10	971	c.768C>T	c.(766-768)TCC>TCT	p.S256S	PBLD_uc001jnr.1_Silent_p.S223S|PBLD_uc001jnt.1_Silent_p.S256S	NM_022129	NP_071412	P30039	PBLD_HUMAN	MAWD binding protein isoform a	256					biosynthetic process		isomerase activity			skin(2)|ovary(1)	3						CTCCTCGGTGGGAACACTGAA	0.413													6	68					0	0	1	0	0
PBLD	64081	broad.mit.edu	37	10	70051922	70051922	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70051922G>A	uc001jns.1	-	5	560	c.357C>T	c.(355-357)ATC>ATT	p.I119I	PBLD_uc001jnr.1_Silent_p.I86I|PBLD_uc001jnt.1_Silent_p.I119I|PBLD_uc001jnu.1_Silent_p.I119I|PBLD_uc001jnv.1_Silent_p.I86I	NM_022129	NP_071412	P30039	PBLD_HUMAN	MAWD binding protein isoform a	119					biosynthetic process		isomerase activity			skin(2)|ovary(1)	3						AGTCCAGGACGATGCCATCCT	0.468													21	44					0	0	1	0	0
TET1	80312	broad.mit.edu	37	10	70446398	70446398	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70446398C>T	uc001jok.3	+	11	5843	c.5338C>T	c.(5338-5340)CGA>TGA	p.R1780*		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1780					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						ACCTATTCCCCGAATCAAGCG	0.468													21	81					0	0	1	0	0
CCAR1	55749	broad.mit.edu	37	10	70516049	70516049	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70516049C>T	uc001joo.2	+	14	1764	c.1645C>T	c.(1645-1647)CGC>TGC	p.R549C	CCAR1_uc001jol.1_Intron|CCAR1_uc001jom.1_Missense_Mutation_p.R354C|CCAR1_uc009xpx.1_Missense_Mutation_p.R523C|CCAR1_uc001jon.1_Missense_Mutation_p.R495C|CCAR1_uc010qiz.1_Missense_Mutation_p.R534C|CCAR1_uc010qja.1_Missense_Mutation_p.R534C|CCAR1_uc010qjb.1_Intron	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	549					apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						TGCAGAGATTCGCTACCATCG	0.453													31	57					0	0	1	0	0
STOX1	219736	broad.mit.edu	37	10	70644918	70644918	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70644918C>T	uc001jos.2	+	3	1453	c.1366C>T	c.(1366-1368)CCT>TCT	p.P456S	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Missense_Mutation_p.P346S	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	456						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						CCCCAAGCTCCCTGCTACACA	0.478													50	96					0	0	1	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70968663	70968663	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70968663C>T	uc001jpe.1	+	15	2288	c.2233C>T	c.(2233-2235)CCA>TCA	p.P745S	SUPV3L1_uc010qjd.1_Missense_Mutation_p.P614S	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	745	Interaction with HBXIP, important for protein stability.				DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						ACTCCTCACTCCAGACATGCT	0.502													17	50					0	0	1	0	0
HKDC1	80201	broad.mit.edu	37	10	70986992	70986992	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70986992C>T	uc001jpf.3	+	2	226	c.93C>T	c.(91-93)CTC>CTT	p.L31L		NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	31					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						ACATGCGGCTCTCCGATGACA	0.617													16	112					0	0	1	0	0
HKDC1	80201	broad.mit.edu	37	10	70987031	70987031	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70987031G>A	uc001jpf.3	+	2	265	c.132G>A	c.(130-132)CGG>CGA	p.R44R		NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	44					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						GGCGGTTCCGGGCTGAGATGG	0.597													36	79					0	0	1	0	0
HKDC1	80201	broad.mit.edu	37	10	70987106	70987106	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70987106G>A	uc001jpf.3	+	2	340	c.207G>A	c.(205-207)AGG>AGA	p.R69R		NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	69					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						CCTTCGTCAGGGCCATTCCCG	0.582													12	45					0	0	1	0	0
HKDC1	80201	broad.mit.edu	37	10	70992650	70992650	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70992650C>T	uc001jpf.3	+	3	490	c.357C>T	c.(355-357)ATC>ATT	p.I119I	HKDC1_uc010qje.1_5'Flank	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	119					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						ATGAAATCATCCGCGGGAACG	0.587													39	134					0	0	1	0	0
HKDC1	80201	broad.mit.edu	37	10	70998852	70998852	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70998852G>A	uc001jpf.3	+	5	683	c.550G>A	c.(550-552)GAT>AAT	p.D184N	HKDC1_uc010qje.1_Missense_Mutation_p.D47N	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	184					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						TCAGGACACGGATGTGGTGAG	0.512													11	40					0	0	1	0	0
HKDC1	80201	broad.mit.edu	37	10	71008381	71008381	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71008381C>T	uc001jpf.3	+	10	1600	c.1467C>T	c.(1465-1467)GCC>GCT	p.A489A	HKDC1_uc010qje.1_Silent_p.A352A	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	489					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						ACGTGCAGGCCAAGATGCGGG	0.667													10	33					0	0	1	0	0
HK1	3098	broad.mit.edu	37	10	71103627	71103627	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71103627C>T	uc001jpl.3	+	2	209	c.108C>T	c.(106-108)CTC>CTT	p.L36L	HK1_uc009xqc.1_Missense_Mutation_p.S100L|HK1_uc001jpg.3_Silent_p.L24L|HK1_uc001jph.3_Silent_p.L40L|HK1_uc001jpi.3_Silent_p.L40L|HK1_uc001jpj.3_Silent_p.L71L|HK1_uc001jpk.3_Silent_p.L35L|HK1_uc009xqd.2_5'UTR	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	36	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						ATGAAACTCTCATAGATATCA	0.502													58	141					0	0	1	0	0
NEUROG3	50674	broad.mit.edu	37	10	71332600	71332600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71332600C>T	uc001jpp.2	-	2	358	c.200G>A	c.(199-201)GGA>GAA	p.G67E		NM_020999	NP_066279	Q9Y4Z2	NGN3_HUMAN	neurogenin 3	67					central nervous system development|endocrine pancreas development|peripheral nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	transcription coactivator activity				0						CCGGCTGCGTCCCCCGCGCCG	0.697													4	9					0	0	1	0	0
NEUROG3	50674	broad.mit.edu	37	10	71332737	71332737	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71332737G>A	uc001jpp.2	-	2	221	c.63C>T	c.(61-63)TTC>TTT	p.F21F		NM_020999	NP_066279	Q9Y4Z2	NGN3_HUMAN	neurogenin 3	21					central nervous system development|endocrine pancreas development|peripheral nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	transcription coactivator activity				0						AGGCTCTGGGGAAGGACCGCT	0.677													22	62					0	0	1	0	0
NEUROG3	50674	broad.mit.edu	37	10	71332740	71332740	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71332740G>A	uc001jpp.2	-	2	218	c.60C>T	c.(58-60)TCC>TCT	p.S20S		NM_020999	NP_066279	Q9Y4Z2	NGN3_HUMAN	neurogenin 3	20					central nervous system development|endocrine pancreas development|peripheral nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	transcription coactivator activity				0						CTCTGGGGAAGGACCGCTCCG	0.672													24	62					0	0	1	0	0
COL13A1	1305	broad.mit.edu	37	10	71631932	71631932	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71631932C>T	uc001jpr.1	+	3	901	c.365C>T	c.(364-366)GCA>GTA	p.A122V	COL13A1_uc001jqj.1_Missense_Mutation_p.A122V|COL13A1_uc001jps.1_Missense_Mutation_p.A122V|COL13A1_uc001jpt.1_Missense_Mutation_p.A122V|COL13A1_uc001jpu.1_Missense_Mutation_p.A122V|COL13A1_uc001jpv.1_Missense_Mutation_p.A122V|COL13A1_uc001jpx.1_Missense_Mutation_p.A122V|COL13A1_uc001jpw.1_Missense_Mutation_p.A122V|COL13A1_uc001jpy.1_Intron|COL13A1_uc001jpz.1_Intron|COL13A1_uc001jqa.1_Intron|COL13A1_uc001jqc.1_Missense_Mutation_p.A122V|COL13A1_uc001jqb.1_Missense_Mutation_p.A122V|COL13A1_uc001jql.2_Intron|COL13A1_uc001jqd.1_Missense_Mutation_p.A122V|COL13A1_uc001jqe.1_Missense_Mutation_p.A122V|COL13A1_uc001jqf.1_Missense_Mutation_p.A122V|COL13A1_uc001jqg.1_Missense_Mutation_p.A122V|COL13A1_uc001jqh.1_Missense_Mutation_p.A122V|COL13A1_uc001jqi.1_Missense_Mutation_p.A122V|COL13A1_uc010qjf.1_Intron|COL13A1_uc001jqk.1_Intron	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	122	Extracellular (Potential).|Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	CGTCACTCTTCATTTCAGGGT	0.348													13	39					0	0	1	0	0
COL13A1	1305	broad.mit.edu	37	10	71634886	71634886	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71634886G>A	uc001jpr.1	+	4	938	c.402G>A	c.(400-402)GGG>GGA	p.G134G	COL13A1_uc001jqj.1_Silent_p.G134G|COL13A1_uc001jps.1_Intron|COL13A1_uc001jpt.1_Silent_p.G134G|COL13A1_uc001jpu.1_Silent_p.G134G|COL13A1_uc001jpv.1_Silent_p.G134G|COL13A1_uc001jpx.1_Silent_p.G134G|COL13A1_uc001jpw.1_Intron|COL13A1_uc001jpy.1_Intron|COL13A1_uc001jpz.1_Intron|COL13A1_uc001jqa.1_Intron|COL13A1_uc001jqc.1_Silent_p.G134G|COL13A1_uc001jqb.1_Intron|COL13A1_uc001jql.2_Silent_p.G134G|COL13A1_uc001jqd.1_Intron|COL13A1_uc001jqe.1_Silent_p.G134G|COL13A1_uc001jqf.1_Silent_p.G134G|COL13A1_uc001jqg.1_Silent_p.G134G|COL13A1_uc001jqh.1_Silent_p.G134G|COL13A1_uc001jqi.1_Silent_p.G134G|COL13A1_uc010qjf.1_Intron|COL13A1_uc001jqk.1_5'UTR	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	134	Extracellular (Potential).|Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	ATCATCAGGGGGACAAAGGTG	0.547													12	33					0	0	1	0	0
COL13A1	1305	broad.mit.edu	37	10	71665544	71665544	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71665544G>A	uc001jpr.1	+	16	1453	c.917G>A	c.(916-918)GGA>GAA	p.G306E	COL13A1_uc001jqj.1_Missense_Mutation_p.G306E|COL13A1_uc001jps.1_Missense_Mutation_p.G277E|COL13A1_uc001jpt.1_Missense_Mutation_p.G265E|COL13A1_uc001jpu.1_Missense_Mutation_p.G287E|COL13A1_uc001jpv.1_Missense_Mutation_p.G306E|COL13A1_uc001jpx.1_Missense_Mutation_p.G284E|COL13A1_uc001jpw.1_Missense_Mutation_p.G253E|COL13A1_uc001jpy.1_Missense_Mutation_p.G244E|COL13A1_uc001jpz.1_Missense_Mutation_p.G249E|COL13A1_uc001jqa.1_Missense_Mutation_p.G246E|COL13A1_uc001jqc.1_Missense_Mutation_p.G306E|COL13A1_uc001jqb.1_Missense_Mutation_p.G255E|COL13A1_uc001jql.2_Missense_Mutation_p.G306E|COL13A1_uc001jqd.1_Missense_Mutation_p.G294E|COL13A1_uc001jqe.1_Missense_Mutation_p.G289E|COL13A1_uc001jqf.1_Missense_Mutation_p.G287E|COL13A1_uc001jqg.1_Missense_Mutation_p.G284E|COL13A1_uc001jqh.1_Missense_Mutation_p.G306E|COL13A1_uc001jqi.1_Missense_Mutation_p.G306E|COL13A1_uc010qjf.1_Missense_Mutation_p.G96E|COL13A1_uc001jqk.1_Missense_Mutation_p.G144E	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	306	Extracellular (Potential).|Triple-helical region 2 (COL2).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	TTTTCCCAGGGAGACCCAGGG	0.542													9	25					0	0	1	0	0
COL13A1	1305	broad.mit.edu	37	10	71690162	71690162	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71690162C>T	uc001jpr.1	+	28	2040	c.1504C>T	c.(1504-1506)CGC>TGC	p.R502C	COL13A1_uc001jqj.1_Missense_Mutation_p.R502C|COL13A1_uc001jps.1_Missense_Mutation_p.R473C|COL13A1_uc001jpt.1_Missense_Mutation_p.R461C|COL13A1_uc001jpu.1_Missense_Mutation_p.R483C|COL13A1_uc001jpv.1_Missense_Mutation_p.R502C|COL13A1_uc001jpx.1_Missense_Mutation_p.R480C|COL13A1_uc001jpw.1_Missense_Mutation_p.R449C|COL13A1_uc001jpy.1_Missense_Mutation_p.R440C|COL13A1_uc001jpz.1_Missense_Mutation_p.R445C|COL13A1_uc001jqa.1_Missense_Mutation_p.R442C|COL13A1_uc001jqc.1_Missense_Mutation_p.R502C|COL13A1_uc001jqb.1_Missense_Mutation_p.R451C|COL13A1_uc001jql.2_Missense_Mutation_p.R502C|COL13A1_uc001jqd.1_Missense_Mutation_p.R490C|COL13A1_uc001jqe.1_Missense_Mutation_p.R485C|COL13A1_uc001jqf.1_Missense_Mutation_p.R483C|COL13A1_uc001jqg.1_Missense_Mutation_p.R480C|COL13A1_uc001jqh.1_Missense_Mutation_p.R502C|COL13A1_uc001jqi.1_Missense_Mutation_p.R502C|COL13A1_uc010qjf.1_Missense_Mutation_p.R292C	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	502	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	AAAGGGACCTCGCGGTAAACC	0.537													11	25					0	0	1	0	0
COL13A1	1305	broad.mit.edu	37	10	71692349	71692349	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71692349C>T	uc001jpr.1	+	29	2220	c.1684C>T	c.(1684-1686)CCA>TCA	p.P562S	COL13A1_uc001jqj.1_Intron|COL13A1_uc001jps.1_Missense_Mutation_p.P533S|COL13A1_uc001jpt.1_Missense_Mutation_p.P521S|COL13A1_uc001jpu.1_Missense_Mutation_p.P543S|COL13A1_uc001jpv.1_Missense_Mutation_p.P562S|COL13A1_uc001jpx.1_Intron|COL13A1_uc001jpw.1_Missense_Mutation_p.P509S|COL13A1_uc001jpy.1_Missense_Mutation_p.P500S|COL13A1_uc001jpz.1_Missense_Mutation_p.P505S|COL13A1_uc001jqa.1_Missense_Mutation_p.P502S|COL13A1_uc001jqc.1_Intron|COL13A1_uc001jqb.1_Intron|COL13A1_uc001jql.2_Missense_Mutation_p.P562S|COL13A1_uc001jqd.1_Missense_Mutation_p.P550S|COL13A1_uc001jqe.1_Missense_Mutation_p.P545S|COL13A1_uc001jqf.1_Missense_Mutation_p.P543S|COL13A1_uc001jqg.1_Missense_Mutation_p.P540S|COL13A1_uc001jqh.1_Missense_Mutation_p.P562S|COL13A1_uc001jqi.1_Missense_Mutation_p.P562S|COL13A1_uc010qjf.1_Intron	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	562	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	GAAGGGCAATCCAGGAGCAGA	0.507													6	23					0	0	1	0	0
COL13A1	1305	broad.mit.edu	37	10	71705447	71705447	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71705447G>A	uc001jpr.1	+	35	2492	c.1956G>A	c.(1954-1956)GGG>GGA	p.G652G	COL13A1_uc001jqj.1_Silent_p.G625G|COL13A1_uc001jps.1_Silent_p.G623G|COL13A1_uc001jpt.1_Silent_p.G611G|COL13A1_uc001jpu.1_Silent_p.G621G|COL13A1_uc001jpv.1_Silent_p.G626G|COL13A1_uc001jpx.1_Silent_p.G603G|COL13A1_uc001jpw.1_Silent_p.G599G|COL13A1_uc001jpy.1_Silent_p.G590G|COL13A1_uc001jpz.1_Silent_p.G595G|COL13A1_uc001jqa.1_Silent_p.G592G|COL13A1_uc001jqc.1_Silent_p.G637G|COL13A1_uc001jqb.1_Silent_p.G574G|COL13A1_uc001jql.2_Silent_p.G652G|COL13A1_uc001jqd.1_Silent_p.G640G|COL13A1_uc001jqe.1_Silent_p.G635G|COL13A1_uc001jqf.1_Silent_p.G633G|COL13A1_uc001jqg.1_Silent_p.G630G|COL13A1_uc001jqh.1_Silent_p.G640G|COL13A1_uc001jqi.1_Silent_p.G638G|COL13A1_uc010qjf.1_Silent_p.G427G	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	652	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	GAGACCCTGGGATGACAGGAC	0.522													7	18					0	0	1	0	0
COL13A1	1305	broad.mit.edu	37	10	71707097	71707098	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71707097_71707098GG>AC	uc001jpr.1	+	36	2560_2561	c.2024_2025GG>AC	c.(2023-2025)CGG>CAC	p.R675H	COL13A1_uc001jqj.1_Missense_Mutation_p.R648H|COL13A1_uc001jps.1_Missense_Mutation_p.R646H|COL13A1_uc001jpt.1_Missense_Mutation_p.R634H|COL13A1_uc001jpu.1_Missense_Mutation_p.R644H|COL13A1_uc001jpv.1_Missense_Mutation_p.R649H|COL13A1_uc001jpx.1_Missense_Mutation_p.R626H|COL13A1_uc001jpw.1_Missense_Mutation_p.R622H|COL13A1_uc001jpy.1_Missense_Mutation_p.R613H|COL13A1_uc001jpz.1_Missense_Mutation_p.R618H|COL13A1_uc001jqa.1_Missense_Mutation_p.R615H|COL13A1_uc001jqc.1_Missense_Mutation_p.R660H|COL13A1_uc001jqb.1_Missense_Mutation_p.R597H|COL13A1_uc001jql.2_Missense_Mutation_p.R675H|COL13A1_uc001jqd.1_Missense_Mutation_p.R663H|COL13A1_uc001jqe.1_Missense_Mutation_p.R658H|COL13A1_uc001jqf.1_Missense_Mutation_p.R656H|COL13A1_uc001jqg.1_Missense_Mutation_p.R653H|COL13A1_uc001jqh.1_Missense_Mutation_p.R663H|COL13A1_uc001jqi.1_Missense_Mutation_p.R661H|COL13A1_uc010qjf.1_Missense_Mutation_p.R450H	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	675	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	AAGGGAAACCGGGTGAGTCTGA	0.51													10	44					0	0	1	0	0
COL13A1	1305	broad.mit.edu	37	10	71712665	71712665	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71712665G>A	uc001jpr.1	+	37	2589	c.2053G>A	c.(2053-2055)GGG>AGG	p.G685R	COL13A1_uc001jqj.1_Missense_Mutation_p.G658R|COL13A1_uc001jps.1_Missense_Mutation_p.G656R|COL13A1_uc001jpt.1_Missense_Mutation_p.G644R|COL13A1_uc001jpu.1_Missense_Mutation_p.G654R|COL13A1_uc001jpv.1_Missense_Mutation_p.G659R|COL13A1_uc001jpx.1_Missense_Mutation_p.G636R|COL13A1_uc001jpw.1_Missense_Mutation_p.G632R|COL13A1_uc001jpy.1_Missense_Mutation_p.G623R|COL13A1_uc001jpz.1_Missense_Mutation_p.G628R|COL13A1_uc001jqa.1_Missense_Mutation_p.G625R|COL13A1_uc001jqc.1_Missense_Mutation_p.G670R|COL13A1_uc001jqb.1_Intron|COL13A1_uc001jql.2_Missense_Mutation_p.G685R|COL13A1_uc001jqd.1_Missense_Mutation_p.G673R|COL13A1_uc001jqe.1_Missense_Mutation_p.G668R|COL13A1_uc001jqf.1_Missense_Mutation_p.G666R|COL13A1_uc001jqg.1_Missense_Mutation_p.G663R|COL13A1_uc001jqh.1_Missense_Mutation_p.G673R|COL13A1_uc001jqi.1_Missense_Mutation_p.G671R|COL13A1_uc010qjf.1_Missense_Mutation_p.G460R	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	685	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	AGGCTCTAGAGGGCCTAAAGG	0.428													21	64					0	0	1	0	0
H2AFY2	55506	broad.mit.edu	37	10	71851671	71851671	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71851671G>A	uc001jqm.2	+	4	897	c.438G>A	c.(436-438)GGG>GGA	p.G146G	H2AFY2_uc001jqn.2_RNA	NM_018649	NP_061119	Q9P0M6	H2AW_HUMAN	H2A histone family, member Y2	146	Lys-rich.				chromatin modification|dosage compensation|nucleosome assembly	Barr body|nucleosome	DNA binding			skin(1)	1						AGAAGGGGGGGAAGAAATCCA	0.537													18	56					0	0	1	0	0
H2AFY2	55506	broad.mit.edu	37	10	71853601	71853601	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:71853601G>A	uc001jqm.2	+	5	1047	c.588G>A	c.(586-588)AAG>AAA	p.K196K	H2AFY2_uc001jqn.2_RNA	NM_018649	NP_061119	Q9P0M6	H2AW_HUMAN	H2A histone family, member Y2	196	Macro.				chromatin modification|dosage compensation|nucleosome assembly	Barr body|nucleosome	DNA binding			skin(1)	1						TGGGACAGAAGGTAACAAAGA	0.418													11	33					0	0	1	0	0
NPFFR1	64106	broad.mit.edu	37	10	72026113	72026113	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72026113G>A	uc010qjk.1	-	1	42	c.36C>T	c.(34-36)CCC>CCT	p.P12P		NM_022146	NP_071429	Q9GZQ6	NPFF1_HUMAN	neuropeptide FF receptor 1	14	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide receptor activity				0						TCTGACTTAGGGGCCAACTGC	0.537													8	15					0	0	1	0	0
LRRC20	55222	broad.mit.edu	37	10	72061139	72061139	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72061139G>A	uc001jqx.1	-	5	748	c.526C>T	c.(526-528)CCG>TCG	p.P176S	LRRC20_uc001jqy.1_Missense_Mutation_p.P120S|LRRC20_uc001jqz.1_Missense_Mutation_p.P126S	NM_207119	NP_997002	Q8TCA0	LRC20_HUMAN	leucine rich repeat containing 20 isoform 1	176											0						GCGCCTTCCGGAGACATGAGC	0.647													24	59					0	0	1	0	0
KIAA1274	27143	broad.mit.edu	37	10	72297607	72297607	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72297607G>A	uc001jrd.3	+	11	1549	c.1268G>A	c.(1267-1269)TGG>TAG	p.W423*	KIAA1274_uc001jre.3_5'Flank	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	423										ovary(2)|central_nervous_system(1)	3						AGGGCGCTGTGGAGCCTGGAG	0.607													20	76					0	0	1	0	0
KIAA1274	27143	broad.mit.edu	37	10	72299375	72299376	+	Missense_Mutation	DNP	CC	TT	TT	rs144093353		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72299375_72299376CC>TT	uc001jrd.3	+	15	2046_2047	c.1765_1766CC>TT	c.(1765-1767)CCC>TTC	p.P589F	KIAA1274_uc001jre.3_5'UTR	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	589										ovary(2)|central_nervous_system(1)	3						AAGCGAGCCTCCCCCAGGCAAG	0.653													18	51					0	0	1	0	0
KIAA1274	27143	broad.mit.edu	37	10	72299495	72299495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72299495G>A	uc001jrd.3	+	15	2166	c.1885G>A	c.(1885-1887)GAC>AAC	p.D629N	KIAA1274_uc001jre.3_5'UTR	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	629										ovary(2)|central_nervous_system(1)	3						CCCCATGCCGGACTTCTGTGC	0.662													23	66					0	0	1	0	0
KIAA1274	27143	broad.mit.edu	37	10	72301234	72301234	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72301234G>A	uc001jrd.3	+	17	2346	c.2065G>A	c.(2065-2067)GGT>AGT	p.G689S	KIAA1274_uc001jre.3_5'UTR	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	689										ovary(2)|central_nervous_system(1)	3						CCCCGAGGTGGGTGAGGAGGA	0.632													8	24					0	0	1	0	0
KIAA1274	27143	broad.mit.edu	37	10	72324234	72324234	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72324234G>A	uc001jrd.3	+	19	2658	c.2377G>A	c.(2377-2379)GCC>ACC	p.A793T	KIAA1274_uc001jre.3_Missense_Mutation_p.A84T	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	793										ovary(2)|central_nervous_system(1)	3						CCTGGAGAAGGCCGACTCCTG	0.642													49	134					0	0	1	0	0
KIAA1274	27143	broad.mit.edu	37	10	72326435	72326435	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72326435G>A	uc001jrd.3	+	20	2798	c.2517G>A	c.(2515-2517)CGG>CGA	p.R839R	KIAA1274_uc001jre.3_Silent_p.R130R	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	839										ovary(2)|central_nervous_system(1)	3						TGCGCTACCGGTGGCAGGAGC	0.677													3	19					0	0	1	0	0
PRF1	5551	broad.mit.edu	37	10	72358659	72358659	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72358659G>A	uc009xqg.2	-	3	979	c.818C>T	c.(817-819)TCT>TTT	p.S273F	PRF1_uc001jrf.3_Missense_Mutation_p.S273F	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	273	MACPF.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						GGCTTCGGCAGAGATGCTGCC	0.622			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				24	86					0	0	1	0	0
PRF1	5551	broad.mit.edu	37	10	72358893	72358893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72358893C>T	uc009xqg.2	-	3	745	c.584G>A	c.(583-585)AGG>AAG	p.R195K	PRF1_uc001jrf.3_Missense_Mutation_p.R195K	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	195	MACPF.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						CCCGAGGGCCCTCTTGAAGTC	0.612			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				7	41					0	0	1	0	0
PRF1	5551	broad.mit.edu	37	10	72360381	72360381	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72360381G>A	uc009xqg.2	-	2	439	c.278C>T	c.(277-279)ACC>ATC	p.T93I	PRF1_uc001jrf.3_Missense_Mutation_p.T93I	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	93	MACPF.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						CCGCCAGTTGGTGAGCGCCAG	0.662			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				12	23					0	0	1	0	0
PRF1	5551	broad.mit.edu	37	10	72360523	72360523	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72360523C>T	uc009xqg.2	-	2	297	c.136G>A	c.(136-138)GAG>AAG	p.E46K	PRF1_uc001jrf.3_Missense_Mutation_p.E46K	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	46	MACPF.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TCCACACCCTCCCCGGCCAGC	0.682			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				6	46					0	0	1	0	0
PRF1	5551	broad.mit.edu	37	10	72360605	72360605	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72360605G>A	uc009xqg.2	-	2	215	c.54C>T	c.(52-54)CCC>CCT	p.P18P	PRF1_uc001jrf.3_Silent_p.P18P	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	18					apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						GGGCAGGGACGGGCAGGGGCA	0.677			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				5	18					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72498746	72498746	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72498746C>T	uc001jrh.2	+	11	1748	c.1748C>T	c.(1747-1749)TCC>TTC	p.S583F	ADAMTS14_uc001jrg.2_Missense_Mutation_p.S586F|ADAMTS14_uc001jri.1_Missense_Mutation_p.S106F	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	583	TSP type-1 1.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						AACAACCCCTCGTGAGTGTGC	0.672													13	24					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72509681	72509681	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72509681G>A	uc001jrh.2	+	16	2367	c.2367G>A	c.(2365-2367)GTG>GTA	p.V789V	ADAMTS14_uc001jrg.2_Silent_p.V792V	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	789	Spacer.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						AGGATGCGGTGGAGGATGCCA	0.642													12	57					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72509694	72509694	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72509694G>A	uc001jrh.2	+	16	2380	c.2380G>A	c.(2380-2382)GAA>AAA	p.E794K	ADAMTS14_uc001jrg.2_Missense_Mutation_p.E797K	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	794	Spacer.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						GGATGCCAAGGAAAGCCTCAA	0.642													13	63					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72509738	72509738	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72509738C>T	uc001jrh.2	+	16	2424	c.2424C>T	c.(2422-2424)ATC>ATT	p.I808I	ADAMTS14_uc001jrg.2_Silent_p.I811I	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	808	Spacer.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CCATTGCCATCCTGGTGAGCC	0.642													11	56					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72511377	72511377	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72511377C>T	uc001jrh.2	+	17	2571	c.2571C>T	c.(2569-2571)GCC>GCT	p.A857A	ADAMTS14_uc001jrg.2_Silent_p.A860A	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	857	TSP type-1 2.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						AGAGCTGGGCCCCCTGCAGCA	0.617													19	48					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72520464	72520464	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72520464C>T	uc001jrh.2	+	22	3527	c.3527C>T	c.(3526-3528)TCC>TTC	p.S1176F	ADAMTS14_uc001jrg.2_Missense_Mutation_p.S1179F	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1176	Pro-rich.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CCTGGAGCATCCTGGAGCATC	0.632													22	54					0	0	1	0	0
C10orf27	219793	broad.mit.edu	37	10	72538330	72538330	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72538330C>T	uc001jrj.1	-	6	880	c.490G>A	c.(490-492)GAA>AAA	p.E164K	C10orf27_uc010qjm.1_Missense_Mutation_p.E164K|C10orf27_uc009xqh.1_RNA|C10orf27_uc010qjn.1_Missense_Mutation_p.E163K|C10orf27_uc009xqi.1_Intron|C10orf27_uc010qjo.1_Missense_Mutation_p.E152K|C10orf27_uc009xqj.1_3'UTR|C10orf27_uc010qjp.1_3'UTR	NM_152710	NP_689923	Q96M53	SPATL_HUMAN	stromal protein associated with thymii and lymph	164					cell differentiation|multicellular organismal development|spermatogenesis	cytosol				skin(1)	1						TTCTTCAGTTCATCCTCCTTG	0.557													71	160					0	0	1	0	0
C10orf27	219793	broad.mit.edu	37	10	72538358	72538358	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72538358G>A	uc001jrj.1	-	6	852	c.462C>T	c.(460-462)TCC>TCT	p.S154S	C10orf27_uc010qjm.1_Silent_p.S154S|C10orf27_uc009xqh.1_RNA|C10orf27_uc010qjn.1_Silent_p.S153S|C10orf27_uc009xqi.1_Intron|C10orf27_uc010qjo.1_Silent_p.S142S|C10orf27_uc009xqj.1_3'UTR|C10orf27_uc010qjp.1_3'UTR	NM_152710	NP_689923	Q96M53	SPATL_HUMAN	stromal protein associated with thymii and lymph	154					cell differentiation|multicellular organismal development|spermatogenesis	cytosol				skin(1)	1						AGGCCACCCGGGAAGCTAGCT	0.587													59	151					0	0	1	0	0
C10orf27	219793	broad.mit.edu	37	10	72539488	72539488	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:72539488C>T	uc001jrj.1	-	5	678	c.288G>A	c.(286-288)GGG>GGA	p.G96G	C10orf27_uc010qjm.1_Silent_p.G96G|C10orf27_uc009xqh.1_RNA|C10orf27_uc010qjn.1_Silent_p.G96G|C10orf27_uc009xqi.1_Intron|C10orf27_uc010qjo.1_Silent_p.G85G|C10orf27_uc009xqj.1_Missense_Mutation_p.G91E|C10orf27_uc010qjp.1_Silent_p.G85G	NM_152710	NP_689923	Q96M53	SPATL_HUMAN	stromal protein associated with thymii and lymph	96					cell differentiation|multicellular organismal development|spermatogenesis	cytosol				skin(1)	1						AGACAGGCTTCCCGGTGAGAT	0.562													16	42					0	0	1	0	0
UNC5B	219699	broad.mit.edu	37	10	73044544	73044544	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73044544G>A	uc001jro.2	+	3	817	c.372G>A	c.(370-372)GAG>GAA	p.E124E	UNC5B_uc001jrp.2_Silent_p.E124E	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	124	Ig-like.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						TTGGGCTGGAGGATTACTGGT	0.682													37	72					0	0	1	0	0
SLC29A3	55315	broad.mit.edu	37	10	73104007	73104007	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73104007C>A	uc001jrr.3	+	3	399	c.342C>A	c.(340-342)CCC>CCA	p.P114P	SLC29A3_uc001jrs.3_Silent_p.P114P|SLC29A3_uc010qjq.1_Intron|SLC29A3_uc001jrt.3_Intron|SLC29A3_uc001jru.3_Intron	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	114	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						CCACCGTGCCCTCCATGCTGT	0.587													25	64					2.41591e-17	2.42788e-17	1	1	0
SLC29A3	55315	broad.mit.edu	37	10	73122030	73122030	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73122030C>T	uc001jrr.3	+	6	1150	c.1093C>T	c.(1093-1095)CTC>TTC	p.L365F	SLC29A3_uc001jrs.3_3'UTR|SLC29A3_uc010qjq.1_Missense_Mutation_p.L219F|SLC29A3_uc001jrt.3_Missense_Mutation_p.L159F|SLC29A3_uc001jru.3_Missense_Mutation_p.L177F	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	365	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						TGGCCGGCAGCTCACCGCCTG	0.592													66	208					0	0	1	0	0
SLC29A3	55315	broad.mit.edu	37	10	73122195	73122195	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73122195T>G	uc001jrr.3	+	6	1315	c.1258T>G	c.(1258-1260)TCC>GCC	p.S420A	SLC29A3_uc001jrs.3_3'UTR|SLC29A3_uc010qjq.1_Missense_Mutation_p.S274A|SLC29A3_uc001jrt.3_Missense_Mutation_p.S214A|SLC29A3_uc001jru.3_Missense_Mutation_p.S232A	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	420	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						ACTCCTCAGCTCCCTGCTGGG	0.632													30	90					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73206137	73206137	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73206137G>A	uc001jrx.3	+	3	507	c.130G>A	c.(130-132)GAG>AAG	p.E44K	CDH23_uc001jrw.3_Missense_Mutation_p.E44K|CDH23_uc001jrv.2_Intron|CDH23_uc009xql.2_Missense_Mutation_p.E89K	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	44	Cadherin 1.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GCTGATCAGCGAGGACACGCC	0.507													23	46					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73405711	73405711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73405711G>A	uc001jrx.3	+	12	1641	c.1264G>A	c.(1264-1266)GAG>AAG	p.E422K	CDH23_uc001jrw.3_Missense_Mutation_p.E422K|CDH23_uc001jry.2_Missense_Mutation_p.E38K|CDH23_uc001jrz.2_Missense_Mutation_p.E38K	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	422	Cadherin 4.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACTGGACTACGAGACCGTGGA	0.592													22	50					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73434899	73434899	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73434899G>A	uc001jrx.3	+	14	1857	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	CDH23_uc001jry.2_Missense_Mutation_p.E110K|CDH23_uc001jrz.2_Missense_Mutation_p.E110K	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	494	Cadherin 5.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CACCTTTGGGGAAGTCAGCTA	0.572													10	34					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73447448	73447448	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73447448C>T	uc001jrx.3	+	18	2408	c.2031C>T	c.(2029-2031)TTC>TTT	p.F677F	CDH23_uc001jry.2_Silent_p.F293F|CDH23_uc001jrz.2_Silent_p.F293F	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	677	Cadherin 7.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCGCCTACTTCGTCTCCGTGG	0.627													21	17					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73462316	73462316	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73462316C>T	uc001jrx.3	+	23	2975	c.2598C>T	c.(2596-2598)CCC>CCT	p.P866P	CDH23_uc001jry.2_Silent_p.P482P|CDH23_uc001jrz.2_Silent_p.P482P	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	866	Cadherin 8.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GTGGCAGGCCCCCTCTGAAAG	0.567													61	188					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73464772	73464772	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73464772G>A	uc001jrx.3	+	24	3215	c.2838G>A	c.(2836-2838)GTG>GTA	p.V946V	CDH23_uc001jry.2_Silent_p.V562V|CDH23_uc001jrz.2_Silent_p.V562V	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	946	Cadherin 9.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GCAGCGGCGTGGTGGTCACCA	0.667													39	85					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73464826	73464826	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73464826G>A	uc001jrx.3	+	24	3269	c.2892G>A	c.(2890-2892)CGG>CGA	p.R964R	CDH23_uc001jry.2_Silent_p.R580R|CDH23_uc001jrz.2_Silent_p.R580R	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	964	Cadherin 9.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACCAGCTGCGGGTGGTGGCCA	0.662													21	49					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73464832	73464833	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73464832_73464833GG>AA	uc001jrx.3	+	24	3275_3276	c.2898_2899GG>AA	c.(2896-2901)GTGGCC>GTAACC	p.A967T	CDH23_uc001jry.2_Missense_Mutation_p.A583T|CDH23_uc001jrz.2_Missense_Mutation_p.A583T	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	967	Cadherin 9.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TGCGGGTGGTGGCCAGTGATGC	0.663													27	40					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73472451	73472451	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73472451G>A	uc001jrx.3	+	27	3627	c.3250G>A	c.(3250-3252)GGC>AGC	p.G1084S	CDH23_uc001jrz.2_Missense_Mutation_p.G700S|C10orf105_uc001jsa.1_3'UTR|C10orf105_uc001jsb.1_3'UTR|CDH23_uc001jsc.1_5'UTR	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1084	Cadherin 10.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GCGACACACGGGCACAGCCAC	0.577													7	25					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73485203	73485203	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73485203G>A	uc001jrx.3	+	29	3882	c.3505G>A	c.(3505-3507)GAG>AAG	p.E1169K	CDH23_uc001jrz.2_Missense_Mutation_p.E785K|C10orf105_uc001jsb.1_Intron|CDH23_uc001jsc.1_Intron	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1169	Cadherin 11.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCTGGACCGGGAGCGGAACTC	0.657													10	32					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73490351	73490351	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73490351C>T	uc001jrx.3	+	30	4082	c.3705C>T	c.(3703-3705)GAC>GAT	p.D1235D	CDH23_uc001jrz.2_Silent_p.D851D|C10orf105_uc001jsb.1_Intron|CDH23_uc001jsc.1_Silent_p.D43D	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1235	Cadherin 12.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						AAGCCACAGACCGAGACTCTG	0.617													9	43					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73544822	73544822	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73544822G>A	uc001jrx.3	+	41	6054	c.5677G>A	c.(5677-5679)GGC>AGC	p.G1893S		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1893	Cadherin 18.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CATCACTGCGGGCAACCGCGA	0.597													25	47					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73544831	73544831	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73544831G>A	uc001jrx.3	+	41	6063	c.5686G>A	c.(5686-5688)GAG>AAG	p.E1896K		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1896	Cadherin 18.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GGGCAACCGCGAGCGGGCCTT	0.592													8	53					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73545474	73545474	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73545474G>A	uc001jrx.3	+	42	6176	c.5799G>A	c.(5797-5799)GAG>GAA	p.E1933E		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1933	Cadherin 18.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACAACCCGGAGAATCCACGCA	0.612													5	16					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73558989	73558989	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73558989C>T	uc001jrx.3	+	49	7553	c.7176C>T	c.(7174-7176)ATC>ATT	p.I2392I	CDH23_uc001jsg.3_Silent_p.I152I|CDH23_uc001jsh.3_Silent_p.I152I|CDH23_uc001jsi.3_Silent_p.I152I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2392	Cadherin 22.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACCTGGAAATCGTGGACATCA	0.617													7	49					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73574719	73574719	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73574719C>T	uc001jrx.3	+	68	10126	c.9749C>T	c.(9748-9750)ACT>ATT	p.T3250I	CDH23_uc001jsg.3_Missense_Mutation_p.T1010I|CDH23_uc001jsh.3_Missense_Mutation_p.T975I|CDH23_uc001jsi.3_Missense_Mutation_p.T975I|CDH23_uc001jsj.3_Missense_Mutation_p.T147I|CDH23_uc010qjr.1_Missense_Mutation_p.T112I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	3250	Cytoplasmic (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CTGATACAGACTGAGCTGGAC	0.652													7	25					0	0	1	0	0
PSAP	5660	broad.mit.edu	37	10	73591668	73591668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73591668G>A	uc001jsm.2	-	3	288	c.184C>T	c.(184-186)CCC>TCC	p.P62S		NM_002778	NP_002769	P07602	SAP_HUMAN	prosaposin isoform a preproprotein	62	Saposin B-type 1.				glycosphingolipid metabolic process|lipid transport|platelet activation|platelet degranulation	extracellular space|Golgi apparatus|integral to membrane|lysosomal lumen	enzyme activator activity|lipid binding			ovary(1)	1						ATGTCGCAGGGAAGGGATTTC	0.502													47	123					0	0	1	0	0
SPOCK2	9806	broad.mit.edu	37	10	73822580	73822580	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73822580C>T	uc001jso.1	-	11	1658	c.1213G>A	c.(1213-1215)GAG>AAG	p.E405K	SPOCK2_uc001jsp.2_Missense_Mutation_p.E405K	NM_014767	NP_055582	Q92563	TICN2_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	405	Glu-rich.				extracellular matrix organization|regulation of cell differentiation|signal transduction|synapse assembly	proteinaceous extracellular matrix	calcium ion binding				0						tcggcctcctcgcctgcttcc	0.468													7	21					0	0	1	0	0
ANAPC16	119504	broad.mit.edu	37	10	73983730	73983730	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:73983730G>T	uc001jsv.2	+	2	176	c.58G>T	c.(58-60)GGA>TGA	p.G20*	ANAPC16_uc001jsw.2_Nonsense_Mutation_p.G20*	NM_173473	NP_775744	Q96DE5	APC16_HUMAN	hypothetical protein LOC119504	20	Ser-rich.				cell division|mitosis|protein ubiquitination	anaphase-promoting complex|cytoplasm				ovary(1)	1						TTCTGTCACTGGATCTGGTTT	0.493													51	122					1.17673e-23	1.18347e-23	1	1	0
CBARA1	10367	broad.mit.edu	37	10	74167714	74167714	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74167714G>A	uc001jtb.1	-	11	1292	c.1159C>T	c.(1159-1161)CAT>TAT	p.H387Y	CBARA1_uc010qjw.1_Missense_Mutation_p.H187Y|CBARA1_uc010qjx.1_Missense_Mutation_p.H187Y|CBARA1_uc009xqo.1_RNA	NM_006077	NP_006068	Q9BPX6	MICU1_HUMAN	calcium binding atopy-related autoantigen 1	385					calcium ion import|defense response|elevation of mitochondrial calcium ion concentration	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			ovary(1)	1						CCAGCCATATGGTAAAAACTC	0.403													12	41					0	0	1	0	0
CCDC109A	90550	broad.mit.edu	37	10	74619011	74619011	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74619011C>T	uc001jtc.2	+	3	318	c.297C>T	c.(295-297)TTC>TTT	p.F99F	CCDC109A_uc009xqp.1_RNA|CCDC109A_uc009xqq.1_RNA|CCDC109A_uc010qjy.1_RNA|CCDC109A_uc009xqr.2_Silent_p.F99F|CCDC109A_uc001jtd.2_Silent_p.F50F	NM_138357	NP_612366	Q8NE86	MCU_HUMAN	coiled-coil domain containing 109A	99	Mitochondrial matrix (Potential).				elevation of mitochondrial calcium ion concentration|mitochondrial calcium ion transport|protein complex oligomerization	integral to membrane|mitochondrial inner membrane	protein binding				0	Prostate(51;0.0198)					GCTGTCAGTTCACACTCAAGC	0.438													64	153					0	0	1	0	0
OIT3	170392	broad.mit.edu	37	10	74658705	74658705	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74658705G>A	uc001jte.1	+	2	563	c.345G>A	c.(343-345)TGG>TGA	p.W115*	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	115						nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					GCTGTCTCTGGAACACCACGG	0.587													19	51					0	0	1	0	0
OIT3	170392	broad.mit.edu	37	10	74673193	74673193	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74673193C>T	uc001jte.1	+	6	1136	c.918C>T	c.(916-918)CTC>CTT	p.L306L	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	306	ZP.					nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					TCAACATCCTCTTCTCTCTCA	0.552													35	71					0	0	1	0	0
OIT3	170392	broad.mit.edu	37	10	74684153	74684153	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74684153G>A	uc001jte.1	+	7	1336	c.1118G>A	c.(1117-1119)CGA>CAA	p.R373Q	OIT3_uc009xqs.1_Intron	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	373	ZP.					nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					CCCAACCTTCGAAACTCCCCA	0.512													22	59					0	0	1	0	0
OIT3	170392	broad.mit.edu	37	10	74692164	74692164	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74692164C>T	uc001jte.1	+	9	1738	c.1520C>T	c.(1519-1521)TCC>TTC	p.S507F	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	507	ZP.					nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					GACGAGCGTTCCCGCTGTGCC	0.552													56	157					0	0	1	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74695422	74695422	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74695422G>A	uc001jtf.1	-	4	608	c.541C>T	c.(541-543)CAG>TAG	p.Q181*	PLA2G12B_uc009xqt.1_Nonsense_Mutation_p.Q91*|PLA2G12B_uc010qjz.1_Nonsense_Mutation_p.Q180*	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	181					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					GCTGCCCGCTGACTATTCATA	0.507													34	70					0	0	1	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74700994	74700994	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74700994G>A	uc001jtf.1	-	3	466	c.399C>T	c.(397-399)TTC>TTT	p.F133F	PLA2G12B_uc009xqt.1_Silent_p.F43F|PLA2G12B_uc010qjz.1_Silent_p.F133F	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	133					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					GACACCATCGGAATTTTGCAT	0.502													41	158					0	0	1	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74714293	74714293	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74714293C>T	uc001jtf.1	-	1	218	c.151G>A	c.(151-153)GAT>AAT	p.D51N	PLA2G12B_uc009xqt.1_5'UTR|PLA2G12B_uc010qjz.1_Missense_Mutation_p.D51N	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	51					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					AGAAAAGAATCGAAGTAGCTA	0.537													71	179					0	0	1	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74714335	74714335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74714335G>A	uc001jtf.1	-	1	176	c.109C>T	c.(109-111)CGG>TGG	p.R37W	PLA2G12B_uc009xqt.1_5'UTR|PLA2G12B_uc010qjz.1_Missense_Mutation_p.R37W	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	37					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					CGGAGGTGCCGAAGGCCCCAG	0.572													64	157					0	0	1	0	0
P4HA1	5033	broad.mit.edu	37	10	74831805	74831805	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:74831805G>A	uc010qka.1	-	5	641	c.307C>T	c.(307-309)CTT>TTT	p.L103F	P4HA1_uc001jtg.2_Missense_Mutation_p.L103F|P4HA1_uc001jth.2_Missense_Mutation_p.L103F|P4HA1_uc010qkb.1_Missense_Mutation_p.L103F|P4HA1_uc001jti.2_RNA	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	103						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	ATATCCTTAAGGACCAGATTC	0.363													63	206					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75051124	75051124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75051124C>T	uc009xrc.2	-	20	2430	c.2309G>A	c.(2308-2310)CGG>CAG	p.R770Q	TTC18_uc001jty.2_Missense_Mutation_p.R770Q|TTC18_uc001jtv.3_5'UTR|TTC18_uc001jtw.3_5'UTR|TTC18_uc001jtx.2_Missense_Mutation_p.R151Q	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	770							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					CTGAAGCATCCGTGCCTGAAG	0.423													57	112					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75051446	75051446	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75051446C>T	uc009xrc.2	-	19	2303	c.2182G>A	c.(2182-2184)GAT>AAT	p.D728N	TTC18_uc001jty.2_Missense_Mutation_p.D728N|TTC18_uc001jtv.3_5'Flank|TTC18_uc001jtw.3_5'Flank|TTC18_uc001jtx.2_Missense_Mutation_p.D109N	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	728	TPR 3.						binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					CAAGTAGCATCCTCAAAGAAA	0.393													12	27					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75069974	75069974	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75069974C>T	uc009xrc.2	-	13	1529	c.1408G>A	c.(1408-1410)GAA>AAA	p.E470K	TTC18_uc001jty.2_Missense_Mutation_p.E470K|TTC18_uc009xrd.1_Missense_Mutation_p.E284K	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	470							binding	p.E470K(1)		ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					AGCTGAATTTCCAACACAATG	0.333													49	124					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75113409	75113409	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75113409G>A	uc009xrc.2	-	3	276	c.155C>T	c.(154-156)CCA>CTA	p.P52L	TTC18_uc001jty.2_Missense_Mutation_p.P52L|TTC18_uc009xrd.1_5'UTR	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	52							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					ACTTCCTTCTGGAGAAACAGT	0.403													19	84					0	0	1	0	0
ZMYND17	118490	broad.mit.edu	37	10	75184446	75184446	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75184446G>A	uc001jud.2	-	7	1314	c.1248C>T	c.(1246-1248)TCC>TCT	p.S416S	ZMYND17_uc001juc.2_3'UTR|ZMYND17_uc009xrh.2_Silent_p.S439S|ZMYND17_uc009xrg.2_Silent_p.S195S	NM_001024593	NP_001019764	Q4VC12	ZMY17_HUMAN	zinc finger, MYND domain containing 17	416							zinc ion binding			ovary(1)	1	Prostate(51;0.0119)					CAGGTTTGAGGGACATGAAAG	0.453													12	115					0	0	1	0	0
USP54	159195	broad.mit.edu	37	10	75289544	75289544	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75289544G>A	uc001juo.2	-	13	1971	c.1954C>T	c.(1954-1956)CCC>TCC	p.P652S	USP54_uc001juk.2_5'UTR|USP54_uc001jul.2_5'UTR|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA|USP54_uc001jup.2_Missense_Mutation_p.P652S|USP54_uc010qkl.1_Missense_Mutation_p.P652S	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	652					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					ATTAGTCGGGGGTGCTGCTCT	0.557											OREG0020266	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	199					0	0	1	0	0
USP54	159195	broad.mit.edu	37	10	75290181	75290181	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75290181G>A	uc001juo.2	-	12	1565	c.1548C>T	c.(1546-1548)ATC>ATT	p.I516I	USP54_uc001juk.2_5'UTR|USP54_uc001jul.2_5'UTR|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA|USP54_uc001jup.2_Silent_p.I516I|USP54_uc010qkl.1_Silent_p.I516I	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	516					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					GTCTGTTATGGATCATATTGC	0.502													17	65					0	0	1	0	0
MYOZ1	58529	broad.mit.edu	37	10	75399765	75399765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75399765G>A	uc001jur.2	-	2	376	c.11C>T	c.(10-12)TCA>TTA	p.S4L		NM_021245	NP_067068	Q9NP98	MYOZ1_HUMAN	myozenin 1	4					myofibril assembly	nucleus|pseudopodium	FATZ binding			ovary(2)	2	Prostate(51;0.0112)					CGGGGTTCCTGAGAGCGGCAT	0.542													14	98					0	0	1	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75406808	75406808	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75406808G>A	uc001jut.3	-	4	2754	c.2602C>T	c.(2602-2604)CCC>TCC	p.P868S	SYNPO2L_uc001jus.3_Missense_Mutation_p.P644S	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	868	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					GGAGTCGGGGGAACCTCATCA	0.582													50	134					0	0	1	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75408259	75408259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75408259G>A	uc001jut.3	-	4	1303	c.1151C>T	c.(1150-1152)TCT>TTT	p.S384F	SYNPO2L_uc001jus.3_Missense_Mutation_p.S160F	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	384						cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					CCCTCGCCCAGAGACCTCACT	0.647													19	88					0	0	1	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75408264	75408264	+	Silent	SNP	C	T	T	rs71471632		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75408264C>T	uc001jut.3	-	4	1298	c.1146G>A	c.(1144-1146)GAG>GAA	p.E382E	SYNPO2L_uc001jus.3_Silent_p.E158E	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	382						cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					GCCCAGAGACCTCACTCAGCT	0.637													26	74					0	0	1	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75408412	75408412	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75408412G>A	uc001jut.3	-	4	1150	c.998C>T	c.(997-999)TCC>TTC	p.S333F	SYNPO2L_uc001jus.3_Missense_Mutation_p.S109F	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	333						cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					GTCCAGCTCGGACTCACTCGT	0.627													16	63					0	0	1	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75408420	75408420	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75408420C>T	uc001jut.3	-	4	1142	c.990G>A	c.(988-990)ACG>ACA	p.T330T	SYNPO2L_uc001jus.3_Silent_p.T106T	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	330						cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					CGGACTCACTCGTGGGGGGAA	0.607													25	62					0	0	1	0	0
KIAA0913	23053	broad.mit.edu	37	10	75550745	75550745	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75550745C>T	uc009xrl.2	+	8	986	c.954C>T	c.(952-954)TCC>TCT	p.S318S	KIAA0913_uc001jve.2_Silent_p.S318S|KIAA0913_uc001jvf.2_Silent_p.S318S|KIAA0913_uc001jvh.2_5'Flank|KIAA0913_uc001jvi.2_5'Flank|KIAA0913_uc010qkr.1_5'Flank|KIAA0913_uc001jvj.2_5'Flank	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	318							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					ATGTGAACTCCATGTATCTGT	0.542													24	64					0	0	1	0	0
NDST2	8509	broad.mit.edu	37	10	75567892	75567892	+	Silent	SNP	G	A	A	rs138811491		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75567892G>A	uc001jvk.2	-	3	1059	c.255C>T	c.(253-255)CCC>CCT	p.P85P	NDST2_uc010qks.1_5'Flank|NDST2_uc010qkt.1_5'UTR|NDST2_uc009xro.2_5'Flank|NDST2_uc010qku.1_5'UTR	NM_003635	NP_003626	P52849	NDST2_HUMAN	heparan glucosaminyl	85	Lumenal (Potential).|Heparan sulfate N-deacetylase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1	Prostate(51;0.0112)					CAAGGACCACGGGTTCAGTTC	0.602													20	34					0	0	1	0	0
CAMK2G	818	broad.mit.edu	37	10	75576685	75576685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75576685G>A	uc001jvv.1	-	19	1634	c.1510C>T	c.(1510-1512)CCC>TCC	p.P504S	CAMK2G_uc001jvm.1_Intron|CAMK2G_uc001jvo.1_Intron|CAMK2G_uc001jvq.1_Intron|CAMK2G_uc001jvr.1_Intron|CAMK2G_uc001jvp.1_Intron|CAMK2G_uc001jvs.1_Intron|CAMK2G_uc001jvt.1_Intron|CAMK2G_uc001jvu.1_Intron|CAMK2G_uc009xrp.1_Intron	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	Error:Variant_position_missing_in_Q13555_after_alignment					insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					TCAAATAAGGGAAAAGTGGGC	0.542													17	43					0	0	1	0	0
PLAU	5328	broad.mit.edu	37	10	75673453	75673453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75673453C>T	uc001jwa.2	+	7	763	c.617C>T	c.(616-618)ACC>ATC	p.T206I	C10orf55_uc001jvz.1_Intron|PLAU_uc010qkw.1_Missense_Mutation_p.T189I|PLAU_uc010qkx.1_Missense_Mutation_p.T120I|PLAU_uc001jwb.2_RNA|PLAU_uc001jwc.2_Missense_Mutation_p.T206I|PLAU_uc009xrq.1_Missense_Mutation_p.T170I	NM_002658	NP_002649	P00749	UROK_HUMAN	plasminogen activator, urokinase isoform 1	206	Peptidase S1.				blood coagulation|chemotaxis|fibrinolysis|proteolysis|regulation of cell adhesion mediated by integrin|regulation of receptor activity|regulation of smooth muscle cell migration|regulation of smooth muscle cell-matrix adhesion|signal transduction	cell surface|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(2)|kidney(1)	3	Prostate(51;0.0112)				Amiloride(DB00594)|Urokinase(DB00013)	GGCTCTGTCACCTACGTGTGT	0.592													32	98					0	0	1	0	0
PLAU	5328	broad.mit.edu	37	10	75674610	75674610	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75674610G>A	uc001jwa.2	+	9	1052	c.906G>A	c.(904-906)TCG>TCA	p.S302S	C10orf55_uc001jvz.1_Intron|PLAU_uc010qkw.1_Silent_p.S285S|PLAU_uc010qkx.1_Silent_p.S216S|PLAU_uc001jwb.2_RNA|PLAU_uc001jwc.2_Silent_p.S302S|PLAU_uc009xrq.1_Silent_p.S266S	NM_002658	NP_002649	P00749	UROK_HUMAN	plasminogen activator, urokinase isoform 1	302	Peptidase S1.				blood coagulation|chemotaxis|fibrinolysis|proteolysis|regulation of cell adhesion mediated by integrin|regulation of receptor activity|regulation of smooth muscle cell migration|regulation of smooth muscle cell-matrix adhesion|signal transduction	cell surface|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(2)|kidney(1)	3	Prostate(51;0.0112)				Amiloride(DB00594)|Urokinase(DB00013)	GCCTGCCCTCGATGTATAACG	0.527													19	43					0	0	1	0	0
PLAU	5328	broad.mit.edu	37	10	75676148	75676148	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:75676148G>A	uc001jwa.2	+	11	1267	c.1121G>A	c.(1120-1122)GGA>GAA	p.G374E	C10orf55_uc001jvz.1_Intron|PLAU_uc010qkw.1_Missense_Mutation_p.G357E|PLAU_uc010qkx.1_Missense_Mutation_p.G288E|PLAU_uc001jwb.2_RNA|PLAU_uc001jwc.2_Missense_Mutation_p.G374E|PLAU_uc009xrq.1_Missense_Mutation_p.G338E	NM_002658	NP_002649	P00749	UROK_HUMAN	plasminogen activator, urokinase isoform 1	374	Peptidase S1.				blood coagulation|chemotaxis|fibrinolysis|proteolysis|regulation of cell adhesion mediated by integrin|regulation of receptor activity|regulation of smooth muscle cell migration|regulation of smooth muscle cell-matrix adhesion|signal transduction	cell surface|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(2)|kidney(1)	3	Prostate(51;0.0112)				Amiloride(DB00594)|Urokinase(DB00013)	GCGTCACAGGGAGACTCAGGG	0.557													5	20					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76732370	76732370	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76732370C>T	uc001jwn.1	+	7	1527	c.1034C>T	c.(1033-1035)CCG>CTG	p.P345L	MYST4_uc001jwm.1_Missense_Mutation_p.P345L|MYST4_uc001jwo.1_Missense_Mutation_p.P345L|MYST4_uc001jwp.1_Missense_Mutation_p.P345L	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	345					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					ATTGGACGACCGAAAAATAAA	0.338			T	CREBBP	AML								53	158					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76735651	76735651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76735651C>T	uc001jwn.1	+	8	2049	c.1556C>T	c.(1555-1557)CCC>CTC	p.P519L	MYST4_uc001jwm.1_Intron|MYST4_uc001jwo.1_Intron|MYST4_uc001jwp.1_Intron	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	519	Ser-rich.|Negatively regulates HAT activity.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TCTCCCTCTCCCCAGAGTTCT	0.547			T	CREBBP	AML								35	86					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76739023	76739023	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76739023C>T	uc001jwn.1	+	10	2650	c.2157C>T	c.(2155-2157)TAC>TAT	p.Y719Y	MYST4_uc001jwm.1_Silent_p.Y427Y|MYST4_uc001jwo.1_Silent_p.Y427Y|MYST4_uc001jwp.1_Silent_p.Y536Y	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	719	Catalytic.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					GTGGCCGGTACCCTTCTGTGA	0.388			T	CREBBP	AML								20	56					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76744936	76744936	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76744936C>T	uc001jwn.1	+	12	2965	c.2472C>T	c.(2470-2472)TTC>TTT	p.F824F	MYST4_uc001jwm.1_Silent_p.F532F|MYST4_uc001jwo.1_Silent_p.F532F|MYST4_uc001jwp.1_Silent_p.F641F	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	824	Catalytic.|Interaction with BRPF1.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TCGAGCCATTCCTTTTTTATG	0.378			T	CREBBP	AML								12	82					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76790259	76790259	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76790259C>T	uc001jwn.1	+	18	6170	c.5677C>T	c.(5677-5679)CCG>TCG	p.P1893S	MYST4_uc001jwo.1_Missense_Mutation_p.P1601S|MYST4_uc001jwp.1_Missense_Mutation_p.P1710S	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1893	Interaction with RUNX1 and RUNX2.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					GAATCTGCCGCCGCCTCTTTT	0.552			T	CREBBP	AML								80	199					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76790610	76790610	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76790610C>T	uc001jwn.1	+	18	6521	c.6028C>T	c.(6028-6030)CAT>TAT	p.H2010Y	MYST4_uc001jwo.1_Missense_Mutation_p.H1718Y|MYST4_uc001jwp.1_Missense_Mutation_p.H1827Y	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	2010	Interaction with RUNX1 and RUNX2.|Met-rich.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					CCACAGCAATCATGGCTATAT	0.507			T	CREBBP	AML								11	142					0	0	1	0	0
DUPD1	338599	broad.mit.edu	37	10	76797674	76797674	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76797674C>T	uc001jwq.1	-	3	583	c.583G>A	c.(583-585)GAG>AAG	p.E195K		NM_001003892	NP_001003892	Q68J44	DUPD1_HUMAN	dual specificity phosphatase and pro isomerase	195	Tyrosine-protein phosphatase.					cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)	2	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					TTGTCCAGCTCCCGGAGCTGC	0.647													36	56					0	0	1	0	0
DUPD1	338599	broad.mit.edu	37	10	76803681	76803681	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76803681C>T	uc001jwq.1	-	2	295	c.295G>A	c.(295-297)GAC>AAC	p.D99N		NM_001003892	NP_001003892	Q68J44	DUPD1_HUMAN	dual specificity phosphatase and pro isomerase	99	Tyrosine-protein phosphatase.					cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)	2	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					CGGTAGTAGTCGGGCCCAGTG	0.667													31	55					0	0	1	0	0
DUSP13	51207	broad.mit.edu	37	10	76868887	76868887	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76868887C>T	uc001jws.2	-	1	84	c.29G>A	c.(28-30)GGG>GAG	p.G10E	DUSP13_uc001jwu.2_5'UTR|DUSP13_uc001jww.2_Missense_Mutation_p.G10E|DUSP13_uc009xrs.2_5'UTR|DUSP13_uc001jwt.2_5'UTR|DUSP13_uc001jwv.2_5'UTR|SAMD8_uc001jwx.1_5'Flank|SAMD8_uc001jwy.1_5'Flank	NM_001007271	NP_001007272	Q6B8I1	MDSP_HUMAN	muscle-restricted dual specificity phosphatase	10						cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					GTCCTCTCCCCCCAGCTCTGG	0.637													20	31					0	0	1	0	0
SAMD8	142891	broad.mit.edu	37	10	76910586	76910586	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:76910586C>T	uc001jwx.1	+	2	403	c.300C>T	c.(298-300)TTC>TTT	p.F100F	SAMD8_uc001jwy.1_Silent_p.F100F	NM_144660	NP_653261	Q96LT4	SAMD8_HUMAN	sterile alpha motif domain containing 8	100					sphingomyelin biosynthetic process	integral to membrane					0	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					TGACCCCTTTCATCAGTGCTC	0.448													32	86					0	0	1	0	0
ZNF503	84858	broad.mit.edu	37	10	77159218	77159218	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:77159218G>A	uc001jxg.2	-	2	1566	c.1230C>T	c.(1228-1230)TCC>TCT	p.S410S	C10orf41_uc010qlf.1_5'Flank	NM_032772	NP_116161	Q96F45	ZN503_HUMAN	zinc finger protein 503	410	Ala-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1	all_cancers(46;0.105)|all_epithelial(25;0.00449)|Prostate(51;0.0112)|Ovarian(15;0.088)					CCAAAGGGCTGGAGCCGGCCG	0.716													4	4					0	0	1	0	0
KCNMA1	3778	broad.mit.edu	37	10	78647111	78647111	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:78647111G>A	uc001jxn.2	-	28	3801	c.3624C>T	c.(3622-3624)TCC>TCT	p.S1208S	KCNMA1_uc001jxj.2_Silent_p.S1154S|KCNMA1_uc001jxk.1_Silent_p.S826S|KCNMA1_uc009xrt.1_Silent_p.S999S|KCNMA1_uc001jxl.1_Silent_p.S833S|KCNMA1_uc001jxo.2_Silent_p.S1191S|KCNMA1_uc001jxm.2_Silent_p.S1150S|KCNMA1_uc001jxq.2_Silent_p.S1180S|uc001jxp.2_5'Flank	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	1208	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	TGGATGGGATGGAGTGAACAG	0.572													25	131					0	0	1	0	0
KCNMA1	3778	broad.mit.edu	37	10	78647157	78647157	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:78647157G>A	uc001jxn.2	-	28	3755	c.3578C>T	c.(3577-3579)TCC>TTC	p.S1193F	KCNMA1_uc001jxj.2_Missense_Mutation_p.S1139F|KCNMA1_uc001jxk.1_Missense_Mutation_p.S811F|KCNMA1_uc009xrt.1_Missense_Mutation_p.S984F|KCNMA1_uc001jxl.1_Missense_Mutation_p.S818F|KCNMA1_uc001jxo.2_Missense_Mutation_p.S1176F|KCNMA1_uc001jxm.2_Missense_Mutation_p.S1135F|KCNMA1_uc001jxq.2_Missense_Mutation_p.S1165F|uc001jxp.2_5'Flank	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	1193	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CGACGAGTGGGAGGAATGGGA	0.602													23	64					0	0	1	0	0
KCNMA1	3778	broad.mit.edu	37	10	78647165	78647165	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:78647165G>A	uc001jxn.2	-	28	3747	c.3570C>T	c.(3568-3570)TCC>TCT	p.S1190S	KCNMA1_uc001jxj.2_Silent_p.S1136S|KCNMA1_uc001jxk.1_Silent_p.S808S|KCNMA1_uc009xrt.1_Silent_p.S981S|KCNMA1_uc001jxl.1_Silent_p.S815S|KCNMA1_uc001jxo.2_Silent_p.S1173S|KCNMA1_uc001jxm.2_Silent_p.S1132S|KCNMA1_uc001jxq.2_Silent_p.S1162S|uc001jxp.2_5'Flank	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	1190	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	GGGAGGAATGGGACAGGCTGG	0.587													22	59					0	0	1	0	0
KCNMA1	3778	broad.mit.edu	37	10	78846279	78846280	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:78846279_78846280GG>AA	uc001jxn.2	-	11	1583_1584	c.1406_1407CC>TT	c.(1405-1407)TCC>TTT	p.S469F	KCNMA1_uc001jxj.2_Missense_Mutation_p.S469F|KCNMA1_uc001jxk.1_Missense_Mutation_p.S84F|KCNMA1_uc009xrt.1_Missense_Mutation_p.S289F|KCNMA1_uc001jxl.1_Missense_Mutation_p.S123F|KCNMA1_uc001jxo.2_Missense_Mutation_p.S469F|KCNMA1_uc001jxm.2_Missense_Mutation_p.S469F|KCNMA1_uc001jxq.2_Missense_Mutation_p.S469F	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	469	RCK N-terminal.|Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	GATTGAGGACGGAACCCTGATA	0.475													20	56					0	0	1	0	0
KCNMA1	3778	broad.mit.edu	37	10	78943275	78943275	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:78943275C>T	uc001jxn.2	-	5	889	c.712G>A	c.(712-714)GAT>AAT	p.D238N	KCNMA1_uc001jxj.2_Missense_Mutation_p.D238N|KCNMA1_uc001jxk.1_5'UTR|KCNMA1_uc009xrt.1_Missense_Mutation_p.D58N|KCNMA1_uc001jxo.2_Missense_Mutation_p.D238N|KCNMA1_uc001jxm.2_Missense_Mutation_p.D238N|KCNMA1_uc001jxq.2_Missense_Mutation_p.D238N	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	238	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CACAATTTATCGTTGGCTGCA	0.428													7	24					0	0	1	0	0
KCNMA1	3778	broad.mit.edu	37	10	78944602	78944602	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:78944602G>A	uc001jxn.2	-	4	852	c.675C>T	c.(673-675)TTC>TTT	p.F225F	KCNMA1_uc001jxj.2_Silent_p.F225F|KCNMA1_uc001jxk.1_5'Flank|KCNMA1_uc009xrt.1_Silent_p.F45F|KCNMA1_uc001jxo.2_Silent_p.F225F|KCNMA1_uc001jxm.2_Silent_p.F225F|KCNMA1_uc001jxq.2_Silent_p.F225F	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	225	Helical; Name=Segment S2; (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	AGTAGAGAAGGAAGAACACGT	0.453													33	99					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	79540266	79540266	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:79540266G>A	uc001jyt.2	+	1		c.41G>A			uc010qlk.1_5'Flank|uc001jyu.1_5'Flank|uc001jyv.2_5'Flank|uc001jyw.1_5'Flank|uc001jyx.2_5'Flank|uc001jyz.2_5'Flank|uc001jza.2_5'Flank|uc001jzb.2_5'Flank|uc001jze.1_5'Flank|uc010qll.1_5'Flank|uc001jzf.1_5'Flank|uc001jzg.2_5'Flank|uc010qlm.1_5'Flank|uc001jzh.2_5'Flank					DQ596613																		GGTAGGGCACGAACTTCTGAA	0.572													28	18					0	0	1	0	0
DLG5	9231	broad.mit.edu	37	10	79572069	79572069	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:79572069G>A	uc001jzk.2	-	21	4162	c.4092C>T	c.(4090-4092)ATC>ATT	p.I1364I	DLG5_uc001jzi.2_Silent_p.I119I|DLG5_uc001jzj.2_Silent_p.I779I|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1364	PDZ 3.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			CTCCACTCACGATGGAGATGC	0.587													18	73					0	0	1	0	0
DLG5	9231	broad.mit.edu	37	10	79579213	79579213	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:79579213G>A	uc001jzk.2	-	17	3607	c.3537C>T	c.(3535-3537)CCC>CCT	p.P1179P	DLG5_uc001jzi.2_5'UTR|DLG5_uc001jzj.2_Silent_p.P594P|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Silent_p.P783P	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1179					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TCAAACTCCGGGGAACAGTGC	0.612													5	38					0	0	1	0	0
DLG5	9231	broad.mit.edu	37	10	79579761	79579761	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:79579761G>A	uc001jzk.2	-	16	3488	c.3418C>T	c.(3418-3420)CCG>TCG	p.P1140S	DLG5_uc001jzi.2_5'UTR|DLG5_uc001jzj.2_Missense_Mutation_p.P555S|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.P744S	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1140					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			CCACTGGCCGGGACACACTTC	0.488													19	76					0	0	1	0	0
RPS24	6229	broad.mit.edu	37	10	79795386	79795386	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:79795386C>T	uc001jzq.2	+	3	329	c.187C>T	c.(187-189)CAT>TAT	p.H63Y	RPS24_uc001jzo.2_Missense_Mutation_p.H63Y|RPS24_uc010qlo.1_Missense_Mutation_p.H63Y|RPS24_uc001jzp.2_Missense_Mutation_p.H63Y|RPS24_uc001jzs.2_Missense_Mutation_p.H63Y|RPS24_uc001jzt.2_RNA	NM_001026	NP_001017	P62847	RS24_HUMAN	ribosomal protein S24 isoform c	63					endocrine pancreas development|erythrocyte homeostasis|maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	nucleotide binding|structural constituent of ribosome|translation initiation factor binding			skin(1)	1	all_cancers(46;0.0343)|all_epithelial(25;0.000959)|Breast(12;0.00113)|Prostate(51;0.0095)		Epithelial(14;0.00128)|OV - Ovarian serous cystadenocarcinoma(4;0.00248)|all cancers(16;0.00428)			ATTCAGAACTCATTTTGGTGG	0.433													65	187					0	0	1	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81050844	81050844	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81050844C>T	uc001kaf.2	+	10	1241	c.669C>T	c.(667-669)TTC>TTT	p.F223F	ZMIZ1_uc001kag.2_Silent_p.F99F|ZMIZ1_uc001kah.1_Silent_p.F99F	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	223					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			AGCAGCAGTTCTCAGCCAAGG	0.662													39	67					0	0	1	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81053203	81053203	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81053203C>T	uc001kaf.2	+	12	1595	c.1023C>T	c.(1021-1023)TCC>TCT	p.S341S	ZMIZ1_uc001kag.2_Silent_p.S217S|ZMIZ1_uc001kah.1_Silent_p.S223S	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	341	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			GGCCTGCCTCCATGGGGGGCA	0.667													30	156					0	0	1	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81056306	81056306	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81056306C>T	uc001kaf.2	+	13	1881	c.1309C>T	c.(1309-1311)CCG>TCG	p.P437S	ZMIZ1_uc001kag.2_Missense_Mutation_p.P313S|ZMIZ1_uc001kah.1_3'UTR	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	437	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CCCCAACCCCCCGAGGCCACT	0.627													66	118					0	0	1	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81065942	81065942	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81065942C>T	uc001kaf.2	+	22	3081	c.2509C>T	c.(2509-2511)CCT>TCT	p.P837S	ZMIZ1_uc001kag.2_Missense_Mutation_p.P713S|ZMIZ1_uc010qlq.1_5'UTR	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	837					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CAAGGACGACCCTGATGGCAT	0.612													18	41					0	0	1	0	0
ZCCHC24	219654	broad.mit.edu	37	10	81192318	81192318	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81192318G>A	uc001kak.2	-	2	630	c.443C>T	c.(442-444)CCC>CTC	p.P148L	ZCCHC24_uc010qlr.1_Silent_p.P88P|ZCCHC24_uc009xrw.2_RNA	NM_153367	NP_699198	Q8N2G6	ZCH24_HUMAN	zinc finger, CCHC domain containing 24	148	CCHC-type.						nucleic acid binding|zinc ion binding			breast(1)	1						CCTTACCTGGGGGCAGTCCTT	0.652													15	37					0	0	1	0	0
EIF5AL1	143244	broad.mit.edu	37	10	81272723	81272724	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81272723_81272724GG>AA	uc009xrx.2	+	1	367_368	c.318_319GG>AA	c.(316-321)GGGGAG>GGAAAG	p.E107K	uc010qls.1_5'Flank	NM_001099692	NP_001093162	Q6IS14	IF5AL_HUMAN	eukaryotic translation initiation factor 5A-like	107					mRNA transport|peptidyl-lysine modification to hypusine|positive regulation of translational elongation|positive regulation of translational termination|protein transport|translational frameshifting|transmembrane transport	endoplasmic reticulum membrane|nuclear pore	ribosome binding|translation elongation factor activity				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			AGGACAGCGGGGAGGTACCAGA	0.535													9	99					0	0	1	0	0
EIF5AL1	143244	broad.mit.edu	37	10	81272747	81272747	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81272747C>T	uc009xrx.2	+	1	391	c.342C>T	c.(340-342)CTC>CTT	p.L114L	uc010qls.1_5'Flank	NM_001099692	NP_001093162	Q6IS14	IF5AL_HUMAN	eukaryotic translation initiation factor 5A-like	114					mRNA transport|peptidyl-lysine modification to hypusine|positive regulation of translational elongation|positive regulation of translational termination|protein transport|translational frameshifting|transmembrane transport	endoplasmic reticulum membrane|nuclear pore	ribosome binding|translation elongation factor activity				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			ACCTTCGTCTCCCTGAGGGAG	0.547													25	137					0	0	1	0	0
EIF5AL1	143244	broad.mit.edu	37	10	81272760	81272760	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81272760C>T	uc009xrx.2	+	1	404	c.355C>T	c.(355-357)CTT>TTT	p.L119F	uc010qls.1_5'Flank	NM_001099692	NP_001093162	Q6IS14	IF5AL_HUMAN	eukaryotic translation initiation factor 5A-like	119					mRNA transport|peptidyl-lysine modification to hypusine|positive regulation of translational elongation|positive regulation of translational termination|protein transport|translational frameshifting|transmembrane transport	endoplasmic reticulum membrane|nuclear pore	ribosome binding|translation elongation factor activity				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			TGAGGGAGACCTTGGCAAGGA	0.547													16	166					0	0	1	0	0
SFTPA1	653509	broad.mit.edu	37	10	81372163	81372163	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81372163G>A	uc001kap.2	+	4	389	c.268G>A	c.(268-270)GAG>AAG	p.E90K	SFTPA1_uc001kaq.2_Missense_Mutation_p.E90K|SFTPA1_uc009xry.2_Missense_Mutation_p.E105K|SFTPA1_uc001kar.2_Missense_Mutation_p.E90K|SFTPA1_uc010qlt.1_Missense_Mutation_p.E31K|SFTPA1_uc009xrz.2_Intron|SFTPA1_uc009xsa.2_Missense_Mutation_p.E90K|SFTPA1_uc009xsf.2_5'Flank	NM_005411	NP_005402	Q8IWL2	SFTA1_HUMAN	surfactant protein A1 isoform 1	90	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	lipid transporter activity|sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			AGAGAAGGGGGAGCCTGGCGA	0.632													11	182					0	0	1	0	0
SFTPA1	653509	broad.mit.edu	37	10	81372178	81372178	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81372178G>A	uc001kap.2	+	4	404	c.283G>A	c.(283-285)GGC>AGC	p.G95S	SFTPA1_uc001kaq.2_Missense_Mutation_p.G95S|SFTPA1_uc009xry.2_Missense_Mutation_p.G110S|SFTPA1_uc001kar.2_Missense_Mutation_p.G95S|SFTPA1_uc010qlt.1_Missense_Mutation_p.G36S|SFTPA1_uc009xrz.2_Intron|SFTPA1_uc009xsa.2_Missense_Mutation_p.G95S|SFTPA1_uc009xsf.2_5'Flank	NM_005411	NP_005402	Q8IWL2	SFTA1_HUMAN	surfactant protein A1 isoform 1	95	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	lipid transporter activity|sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			TGGCGAGAGGGGCCCTCCAGG	0.612													103	72					0	0	1	0	0
SFTPA1	653509	broad.mit.edu	37	10	81373758	81373758	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81373758C>T	uc001kap.2	+	6	757	c.636C>T	c.(634-636)TAC>TAT	p.Y212Y	SFTPA1_uc001kaq.2_Silent_p.Y212Y|SFTPA1_uc009xry.2_Silent_p.Y227Y|SFTPA1_uc001kar.2_Silent_p.Y212Y|SFTPA1_uc010qlt.1_Silent_p.Y153Y|SFTPA1_uc009xrz.2_Silent_p.Y142Y|SFTPA1_uc009xsa.2_Silent_p.Y212Y|SFTPA1_uc009xsf.2_RNA	NM_005411	NP_005402	Q8IWL2	SFTA1_HUMAN	surfactant protein A1 isoform 1	212	C-type lectin.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	lipid transporter activity|sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			CCAACTGGTACCGAGGGGAGC	0.557													95	191					0	0	1	0	0
LOC650623	650623	broad.mit.edu	37	10	81443974	81443974	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81443974G>A	uc010qlu.1	+	1		c.1244G>A				NR_027512				Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA.												0						CTACGGGGACGGCGGCAAGCA	0.632													4	6					0	0	1	0	0
MBL1P	8512	broad.mit.edu	37	10	81680793	81680793	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81680793G>A	uc001kbf.2	+	4		c.636G>A			MBL1P_uc001kbg.1_RNA					Homo sapiens mannose-binding protein-A pseudogene (MBL1P1) mRNA sequence.												0						CAGGACCTAGGGGCCAAAAAG	0.602													6	10					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81697726	81697726	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81697726C>T	uc001kbh.2	-	8	1053	c.1010G>A	c.(1009-1011)TGG>TAG	p.W337*	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	337	C-type lectin.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			CCCTGGGGCCCAGTTGGAATA	0.547													75	212					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81697756	81697756	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81697756G>A	uc001kbh.2	-	8	1023	c.980C>T	c.(979-981)CCC>CTC	p.P327L	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	327	C-type lectin.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			CTCTCCTGTGGGGTAGGTGAA	0.572													75	196					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81697929	81697929	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81697929G>A	uc001kbh.2	-	8	850	c.807C>T	c.(805-807)GGC>GGT	p.G269G	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	269	C-type lectin.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			GTTTTACAAAGCCTGCTGTCT	0.542													32	91					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81702170	81702170	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81702170C>T	uc001kbh.2	-	4	450	c.407G>A	c.(406-408)GGC>GAC	p.G136D	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	136	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			TCCTTTTGGGCCTGGCTTGCC	0.597													19	39					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81702197	81702197	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81702197C>T	uc001kbh.2	-	4	423	c.380G>A	c.(379-381)GGG>GAG	p.G127E	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	127	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			TCCTATGTTCCCCTGCTTCCC	0.592													17	41					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81702588	81702588	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81702588G>A	uc001kbh.2	-	3	290	c.247C>T	c.(247-249)CCA>TCA	p.P83S	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	83	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			GGCCCAACTGGGCCAGCTTGT	0.577													41	87					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81706230	81706230	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81706230C>T	uc001kbh.2	-	2	229	c.186G>A	c.(184-186)GAG>GAA	p.E62E	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	62	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			GGTCCCCCTTCTCGCCCCGAG	0.602													24	47					0	0	1	0	0
PLAC9	219348	broad.mit.edu	37	10	81903997	81903997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:81903997G>A	uc001kbp.1	+	3	442	c.181G>A	c.(181-183)GAT>AAT	p.D61N		NM_001012973	NP_001012991	Q5JTB6	PLAC9_HUMAN	placenta-specific 9 precursor	61						extracellular region					0	Prostate(51;0.0095)|all_epithelial(25;0.175)		Colorectal(32;0.109)			GAAGACCGTGGATCACCTGGG	0.612											OREG0020321	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	65					0	0	1	0	0
DYDC2	84332	broad.mit.edu	37	10	82122265	82122265	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:82122265G>A	uc001kca.1	+	3	446	c.66G>A	c.(64-66)GCG>GCA	p.A22A	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Silent_p.A22A	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	22							protein binding				0			Colorectal(32;0.229)			CAGAGGTGGCGAAGGTTCGGC	0.488													24	52					0	0	1	0	0
DYDC2	84332	broad.mit.edu	37	10	82122300	82122300	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:82122300C>T	uc001kca.1	+	3	481	c.101C>T	c.(100-102)GCT>GTT	p.A34V	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Missense_Mutation_p.A34V	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	34							protein binding				0			Colorectal(32;0.229)			GAATACCTGGCTCACTGGCTT	0.498													13	58					0	0	1	0	0
DYDC2	84332	broad.mit.edu	37	10	82126582	82126582	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:82126582C>T	uc001kca.1	+	5	789	c.409C>T	c.(409-411)CCT>TCT	p.P137S	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Missense_Mutation_p.P137S	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	137							protein binding				0			Colorectal(32;0.229)			TCAACAGGTTCCTCCTTCAGA	0.473													52	126					0	0	1	0	0
NRG3	10718	broad.mit.edu	37	10	84733647	84733647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:84733647G>A	uc001kco.2	+	7	1415	c.1388G>A	c.(1387-1389)GGA>GAA	p.G463E	NRG3_uc010qlz.1_Missense_Mutation_p.G462E|NRG3_uc001kcp.2_Missense_Mutation_p.G242E|NRG3_uc001kcq.2_Missense_Mutation_p.G113E|NRG3_uc001kcr.2_Missense_Mutation_p.G113E	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	463	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		CCTGACAGAGGAAGCCAGTCT	0.527													5	59					0	0	1	0	0
GHITM	27069	broad.mit.edu	37	10	85904638	85904638	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85904638C>T	uc001kcs.1	+	5	553	c.349C>T	c.(349-351)CCT>TCT	p.P117S	GHITM_uc010qma.1_Intron|GHITM_uc010qmb.1_Missense_Mutation_p.P47S	NM_014394	NP_055209	Q9H3K2	GHITM_HUMAN	growth hormone inducible transmembrane protein	117	Mitochondrial intermembrane (Potential).				apoptosis	integral to membrane|mitochondrial inner membrane					0						CAGAATTTGGCCTCAGTATGT	0.274													10	85					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85970858	85970858	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85970858C>T	uc001kcv.2	+	13	1422	c.1422C>T	c.(1420-1422)TCC>TCT	p.S474S	CDHR1_uc001kcw.2_Silent_p.S474S|CDHR1_uc009xst.2_Intron|CDHR1_uc001kcx.2_5'Flank	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	474	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						AGTTCGACTCCCTCTACTACG	0.582													40	90					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85971439	85971439	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85971439G>A	uc001kcv.2	+	14	1521	c.1521G>A	c.(1519-1521)GTG>GTA	p.V507V	CDHR1_uc001kcw.2_Silent_p.V507V|CDHR1_uc009xst.2_Silent_p.V211V|CDHR1_uc001kcx.2_5'Flank	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	507	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						GGGGCGAAGTGAAATATTCCA	0.572													64	145					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85973846	85973846	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85973846C>T	uc001kcv.2	+	17	2049	c.2049C>T	c.(2047-2049)TCC>TCT	p.S683S	CDHR1_uc001kcw.2_Intron|CDHR1_uc009xst.2_Silent_p.S387S|CDHR1_uc001kcx.2_5'UTR	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	683	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						AGACCCTCTCCCGGAGCCCCA	0.572													41	89					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85974125	85974125	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85974125G>A	uc001kcv.2	+	17	2328	c.2328G>A	c.(2326-2328)GAG>GAA	p.E776E	CDHR1_uc001kcw.2_Intron|CDHR1_uc009xst.2_Silent_p.E480E|CDHR1_uc001kcx.2_Silent_p.E90E	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	776	Cytoplasmic (Potential).|Pro-rich.				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						CTCCCAATGAGAACTGTAACA	0.612													46	103					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85981972	85981972	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85981972C>T	uc001kcy.2	-	3	1365	c.1357G>A	c.(1357-1359)GAT>AAT	p.D453N	LRIT2_uc010qmc.1_Missense_Mutation_p.D463N	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	453						integral to membrane				ovary(2)	2						CCACCAGCATCTCTGCCTGTT	0.597													35	94					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85984100	85984100	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85984100C>T	uc001kcy.2	-	2	889	c.881G>A	c.(880-882)AGA>AAA	p.R294K	LRIT2_uc010qmc.1_Missense_Mutation_p.R294K	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	294	Ig-like.					integral to membrane				ovary(2)	2						ATCAAATTCTCTCCACATACT	0.512													5	41					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85984115	85984115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85984115G>A	uc001kcy.2	-	2	874	c.866C>T	c.(865-867)CCC>CTC	p.P289L	LRIT2_uc010qmc.1_Missense_Mutation_p.P289L	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	289	Ig-like.					integral to membrane				ovary(2)	2						CATACTCAGGGGATAAGTCCA	0.527													19	40					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85984557	85984557	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85984557G>A	uc001kcy.2	-	2	432	c.424C>T	c.(424-426)CTC>TTC	p.L142F	LRIT2_uc010qmc.1_Missense_Mutation_p.L142F	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	142	LRR 3.					integral to membrane				ovary(2)	2						AGCTCAGGGAGTGCATCAATC	0.527													22	123					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85984599	85984599	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85984599G>A	uc001kcy.2	-	2	390	c.382C>T	c.(382-384)CTC>TTC	p.L128F	LRIT2_uc010qmc.1_Missense_Mutation_p.L128F	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	128	LRR 3.					integral to membrane				ovary(2)	2						ACCCTCAGGAGAGGGGTGGCA	0.557													43	124					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85984756	85984756	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85984756G>A	uc001kcy.2	-	2	233	c.225C>T	c.(223-225)TTC>TTT	p.F75F	LRIT2_uc010qmc.1_Silent_p.F75F	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	75						integral to membrane				ovary(2)	2						TCATGTTGATGAAAGACCCTT	0.463													13	114					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85985238	85985238	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85985238G>T	uc001kcy.2	-	1	47	c.39C>A	c.(37-39)GTC>GTA	p.V13V	LRIT2_uc010qmc.1_Silent_p.V13V	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	13						integral to membrane		p.V13I(1)		ovary(2)	2						TATCCAGAAAGACCAGAACTA	0.478													13	34					3.27435e-08	3.2831e-08	1	1	0
LRIT1	26103	broad.mit.edu	37	10	85992412	85992412	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85992412C>T	uc001kcz.1	-	4	1165	c.1143G>A	c.(1141-1143)AGG>AGA	p.R381R		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	381	Lumenal (Potential).					integral to endoplasmic reticulum membrane					0						GGGGGACATGCCTGGCCACCA	0.607													8	25					0	0	1	0	0
LRIT1	26103	broad.mit.edu	37	10	85992447	85992447	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85992447C>T	uc001kcz.1	-	4	1130	c.1108G>A	c.(1108-1110)GAA>AAA	p.E370K		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	370	Lumenal (Potential).					integral to endoplasmic reticulum membrane					0						GCAGCAGCTTCCCCTCCGCCA	0.577													6	16					0	0	1	0	0
LRIT1	26103	broad.mit.edu	37	10	85997276	85997276	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85997276C>T	uc001kcz.1	-	2	311	c.289G>A	c.(289-291)GAG>AAG	p.E97K		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	97	LRR 2.|Lumenal (Potential).					integral to endoplasmic reticulum membrane					0						GCGTTGAGCTCGCTGAGGGCG	0.736													9	14					0	0	1	0	0
LRIT1	26103	broad.mit.edu	37	10	85997426	85997426	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:85997426C>T	uc001kcz.1	-	2	161	c.139G>A	c.(139-141)GAC>AAC	p.D47N		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	47	Lumenal (Potential).|LRRNT.					integral to endoplasmic reticulum membrane					0						ATGTCGGGGTCGTTGCACACT	0.657													17	55					0	0	1	0	0
RGR	5995	broad.mit.edu	37	10	86008723	86008723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:86008723G>A	uc001kdc.1	+	3	320	c.282G>A	c.(280-282)CAG>CAA	p.Q94Q	RGR_uc001kdb.1_Missense_Mutation_p.G82R|RGR_uc001kdd.1_Silent_p.Q98Q|RGR_uc001kde.1_Silent_p.Q94Q	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	94	Helical; Name=3; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						ACGGCTTCCAGGGCTTTGTGA	0.632													10	56					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87362036	87362036	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87362036G>A	uc001kdl.1	-	16	3125	c.3024C>T	c.(3022-3024)TCC>TCT	p.S1008S	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.S579S|uc001kdk.1_Intron	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	1008	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	GCAGTCAGATGGAGGTCCCGT	0.577										Multiple Myeloma(13;0.14)			8	15					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87373167	87373167	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87373167C>T	uc001kdl.1	-	15	2699	c.2598G>A	c.(2596-2598)AAG>AAA	p.K866K	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.K437K	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	866	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TGCTGACCTCCTTGGGGGTCT	0.612										Multiple Myeloma(13;0.14)			9	23					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87373272	87373272	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87373272G>A	uc001kdl.1	-	15	2594	c.2493C>T	c.(2491-2493)TTC>TTT	p.F831F	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.F402F	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	831	Helical; (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	AGACCCCGGCGAAGCTGTGCA	0.652										Multiple Myeloma(13;0.14)			21	51					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87487623	87487623	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87487623G>A	uc001kdl.1	-	10	1623	c.1522C>T	c.(1522-1524)CTC>TTC	p.L508F	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.L79F	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	508	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TTGCTGATGAGCTCCCCGATC	0.537										Multiple Myeloma(13;0.14)			17	70					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87487747	87487747	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87487747G>A	uc001kdl.1	-	10	1499	c.1398C>T	c.(1396-1398)TTC>TTT	p.F466F	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.F37F	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	466	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CATCTATGGAGAACCCTTTGT	0.493										Multiple Myeloma(13;0.14)			30	170					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87487804	87487804	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87487804C>T	uc001kdl.1	-	10	1442	c.1341G>A	c.(1339-1341)GAG>GAA	p.E447E	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.E18E	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	447	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TCACGAAAGGCTCTTCCTGAG	0.448										Multiple Myeloma(13;0.14)			46	108					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87489305	87489305	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87489305G>A	uc001kdl.1	-	9	1401	c.1300C>T	c.(1300-1302)CTC>TTC	p.L434F	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.L5F	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	434	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	AATCCTTGGAGGCGGCTGCCC	0.517										Multiple Myeloma(13;0.14)			27	66					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87614323	87614323	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87614323G>A	uc001kdl.1	-	8	1264	c.1163C>T	c.(1162-1164)TCG>TTG	p.S388L	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	388	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	ATAGGGATTCGAACTGTCCTC	0.493										Multiple Myeloma(13;0.14)			27	64					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87615822	87615822	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87615822C>T	uc001kdl.1	-	7	1178	c.1077G>A	c.(1075-1077)TGG>TGA	p.W359*	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	359	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TCCCACCATTCCATGGCTTAG	0.552										Multiple Myeloma(13;0.14)			10	98					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87966146	87966146	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:87966146G>A	uc001kdl.1	-	3	596	c.495C>T	c.(493-495)TTC>TTT	p.F165F	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	165	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	AGAACATGACGAACTTCTGCC	0.617										Multiple Myeloma(13;0.14)			6	58					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	88123744	88123744	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88123744G>A	uc001kdl.1	-	2	290	c.189C>T	c.(187-189)TCC>TCT	p.S63S	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	63	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TGACCTTGATGGAGTAGGTGA	0.612										Multiple Myeloma(13;0.14)			26	65					0	0	1	0	0
WAPAL	23063	broad.mit.edu	37	10	88211809	88211809	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88211809G>A	uc001kdo.2	-	15	3471	c.3029C>T	c.(3028-3030)TCT>TTT	p.S1010F	WAPAL_uc009xsv.2_Intron|WAPAL_uc001kdn.2_Missense_Mutation_p.S1047F|WAPAL_uc009xsw.2_Missense_Mutation_p.S1004F	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	1010	WAPL.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						AGAATCAAAAGAGCACGATGT	0.428													14	133					0	0	1	0	0
OPN4	94233	broad.mit.edu	37	10	88417801	88417801	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88417801C>T	uc001kdq.2	+	3	530	c.303C>T	c.(301-303)CTC>CTT	p.L101L	OPN4_uc001kdp.2_Silent_p.L112L|OPN4_uc010qmk.1_Silent_p.L112L|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	101	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						GCAGAAGCCTCCGGACACCTG	0.562													7	92					0	0	1	0	0
OPN4	94233	broad.mit.edu	37	10	88418324	88418324	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88418324C>T	uc001kdq.2	+	4	735	c.508C>T	c.(508-510)CTG>TTG	p.L170L	OPN4_uc001kdp.2_Silent_p.L181L|OPN4_uc010qmk.1_Silent_p.L181L|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	170	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						GGACCGCTACCTGGTAATCAC	0.612													13	69					0	0	1	0	0
MMRN2	79812	broad.mit.edu	37	10	88702482	88702482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88702482C>T	uc001kea.2	-	6	2186	c.2059G>A	c.(2059-2061)GAG>AAG	p.E687K	MMRN2_uc010qmn.1_Missense_Mutation_p.E330K|MMRN2_uc009xtb.2_Missense_Mutation_p.E644K	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	687						extracellular space				large_intestine(1)	1						GCGGCCTCCTCGCGGCCCGCG	0.771													4	2					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88764104	88764104	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88764104C>T	uc001kee.2	+	10	1241	c.37C>T	c.(37-39)CAT>TAT	p.H13Y	AGAP11_uc001kef.2_RNA	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	13					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GATACATCATCATATCACGGA	0.373													100	235					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88768356	88768356	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88768356G>A	uc001kee.2	+	12	1551	c.347G>A	c.(346-348)GGG>GAG	p.G116E	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	116					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GACACCATCGGGAGCGGCAGA	0.512													139	358					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88769257	88769257	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88769257G>A	uc001kee.2	+	12	2452	c.1248G>A	c.(1246-1248)ACG>ACA	p.T416T	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	416	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						AGGGGCAGACGAAACCCTCAA	0.527													59	158					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88769450	88769450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88769450G>A	uc001kee.2	+	12	2645	c.1441G>A	c.(1441-1443)GAG>AAG	p.E481K	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	481					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GGAGGTGAACGAGACCTGTGG	0.672													64	130					0	0	1	0	0
GLUD1	2746	broad.mit.edu	37	10	88818945	88818945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88818945G>A	uc001keh.2	-	10	1461	c.1364C>T	c.(1363-1365)ACC>ATC	p.T455I	GLUD1_uc001keg.2_Missense_Mutation_p.T288I|GLUD1_uc010qmp.1_Missense_Mutation_p.T322I	NM_005271	NP_005262	P00367	DHE3_HUMAN	glutamate dehydrogenase 1 precursor	455					glutamate biosynthetic process|glutamate catabolic process|positive regulation of insulin secretion	mitochondrial matrix	ADP binding|ATP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|identical protein binding|leucine binding|NAD+ binding				0					L-Glutamic Acid(DB00142)|NADH(DB00157)	ATATTTGAAGGTCAAACGGCC	0.398													66	183					0	0	1	0	0
FAM22A	728118	broad.mit.edu	37	10	88988177	88988177	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:88988177C>T	uc001kek.2	+	2	923	c.540C>T	c.(538-540)ACC>ACT	p.T180T	LOC728190_uc009xtc.2_Intron|LOC728190_uc009xtd.2_Intron	NM_001099338	NP_001092808	Q8IVF1	FA22A_HUMAN	hypothetical protein LOC728118	180											0						TGCTGTCTACCCTCCCCAGCA	0.677													28	183					0	0	1	0	0
FAM22D	728130	broad.mit.edu	37	10	89127097	89127097	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:89127097C>T	uc009xte.1	+	7	2188	c.1642C>T	c.(1642-1644)CCT>TCT	p.P548S		NM_001009610	NP_001009610	Q5VT03	FA22D_HUMAN	hypothetical protein LOC728130	783											0						GTAGGGAGCCCCTTCAGATGC	0.632													11	26					0	0	1	0	0
LIPJ	142910	broad.mit.edu	37	10	90356112	90356112	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90356112C>T	uc001kff.2	+	7	829	c.515C>T	c.(514-516)TCC>TTC	p.S172F		NM_001010939	NP_001010939	Q5W064	LIPJ_HUMAN	lipase, family member J	172					lipid catabolic process		hydrolase activity			ovary(1)	1		all_cancers(4;2.79e-10)|Prostate(4;1.68e-15)|all_epithelial(4;1.43e-09)|Colorectal(252;0.0381)|Breast(4;0.141)|Melanoma(5;0.2)|all_hematologic(4;0.222)		Colorectal(12;1.02e-05)|COAD - Colon adenocarcinoma(12;1.54e-05)		CCAGTTTTTTCCACAAAGTAC	0.254													15	37					0	0	1	0	0
LIPF	8513	broad.mit.edu	37	10	90427414	90427414	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90427414C>T	uc001kfg.1	+	3	360	c.194C>T	c.(193-195)CCT>CTT	p.P65L	LIPF_uc009xtk.2_Missense_Mutation_p.P65L|LIPF_uc001kfh.1_Missense_Mutation_p.P75L|LIPF_uc010qmt.1_Missense_Mutation_p.P75L|LIPF_uc010qmu.1_Missense_Mutation_p.P65L	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	65					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		AATAGAATTCCTTATGGGAAG	0.239													26	133					0	0	1	0	0
LIPF	8513	broad.mit.edu	37	10	90433383	90433383	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90433383C>T	uc001kfg.1	+	7	874	c.708C>T	c.(706-708)TTC>TTT	p.F236F	LIPF_uc001kfh.1_Silent_p.F213F|LIPF_uc010qmt.1_Silent_p.F246F|LIPF_uc010qmu.1_Silent_p.F203F	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	236					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		CACACAACTTCTTTGATCAAT	0.368													83	154					0	0	1	0	0
LIPF	8513	broad.mit.edu	37	10	90435980	90435980	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90435980G>A	uc001kfg.1	+	9	1069	c.903G>A	c.(901-903)GGG>GGA	p.G301G	LIPF_uc001kfh.1_Silent_p.G278G|LIPF_uc010qmt.1_Silent_p.G311G|LIPF_uc010qmu.1_Silent_p.G268G	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	301					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		TTAAGTCTGGGAAATTCCAAG	0.308													12	51					0	0	1	0	0
LIPK	643414	broad.mit.edu	37	10	90492287	90492287	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90492287C>T	uc010qmv.1	+	5	648	c.648C>T	c.(646-648)ACC>ACT	p.T216T		NM_001080518	NP_001073987	Q5VXJ0	LIPK_HUMAN	lipase, family member K precursor	216					lipid catabolic process	extracellular region	hydrolase activity			ovary(2)	2		Colorectal(252;0.0381)		Colorectal(12;7.03e-05)|COAD - Colon adenocarcinoma(12;8.33e-05)		AACTAACAACCCTTTCCAGGC	0.363													55	201					0	0	1	0	0
ANKRD22	118932	broad.mit.edu	37	10	90588376	90588376	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90588376G>A	uc001kfj.3	-	3	629	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	87	ANK 2.										0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		GATAATCAATGAAGGTAAATT	0.323													50	120					0	0	1	0	0
STAMBPL1	57559	broad.mit.edu	37	10	90673158	90673158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90673158C>T	uc001kfk.2	+	6	1144	c.721C>T	c.(721-723)CAC>TAC	p.H241Y	STAMBPL1_uc010qmx.1_Missense_Mutation_p.H241Y|STAMBPL1_uc009xto.2_RNA|STAMBPL1_uc001kfl.2_Missense_Mutation_p.H241Y|STAMBPL1_uc001kfn.2_Missense_Mutation_p.H75Y	NM_020799	NP_065850	Q96FJ0	STALP_HUMAN	STAM binding protein-like 1	241							metal ion binding|metallopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0381)		Colorectal(12;6.38e-05)|COAD - Colon adenocarcinoma(12;7.75e-05)		TTATGCTAGCCACTCTCCTCC	0.463													46	89					0	0	1	0	0
ACTA2	59	broad.mit.edu	37	10	90695041	90695041	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90695041C>T	uc001kfp.2	-	9	1189	c.1073G>A	c.(1072-1074)TGG>TAG	p.W358*	STAMBPL1_uc010qmx.1_Intron|ACTA2_uc010qmy.1_Nonsense_Mutation_p.W313*|ACTA2_uc001kfq.2_Nonsense_Mutation_p.W358*|uc001kfo.1_RNA	NM_001613	NP_001604	P62736	ACTA_HUMAN	alpha 2 actin	358					response to virus	cytosol	ATP binding				0		Colorectal(252;0.0161)		Colorectal(12;0.000123)|COAD - Colon adenocarcinoma(12;0.00018)		TTTGCTGATCCACATCTGCTG	0.517											OREG0020356	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	148					0	0	1	0	0
FAS	355	broad.mit.edu	37	10	90762815	90762815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90762815C>T	uc001kfr.2	+	2	406	c.60C>T	c.(58-60)TCC>TCT	p.S20S	FAS_uc010qna.1_RNA|FAS_uc001kfs.2_Silent_p.S20S|FAS_uc001kft.2_Silent_p.S20S|FAS_uc010qnb.1_RNA|FAS_uc010qnc.1_RNA|FAS_uc001kfw.2_Silent_p.S20S|FAS_uc010qnd.1_RNA|FAS_uc010qne.1_RNA|FAS_uc009xtp.2_RNA	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,	20					activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		GATTATCGTCCAAAAGTGTTA	0.398									Autoimmune_Lymphoproliferative_syndrome_type_I				24	66					0	0	1	0	0
FAS	355	broad.mit.edu	37	10	90770529	90770529	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90770529G>A	uc001kfr.2	+	6	871	c.525G>A	c.(523-525)GGG>GGA	p.G175G	FAS_uc010qna.1_RNA|FAS_uc001kfs.2_Silent_p.G175G|FAS_uc001kft.2_Intron|FAS_uc010qnb.1_RNA|FAS_uc010qnc.1_Intron|FAS_uc001kfw.2_Missense_Mutation_p.G139D|FAS_uc010qnd.1_RNA|FAS_uc010qne.1_Intron|FAS_uc009xtp.2_RNA	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,	175	Helical; (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		CTAACTTGGGGTGGCTTTGTC	0.348									Autoimmune_Lymphoproliferative_syndrome_type_I				69	306					0	0	1	0	0
CH25H	9023	broad.mit.edu	37	10	90966300	90966300	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90966300G>A	uc001kfz.2	-	1	772	c.750C>T	c.(748-750)TTC>TTT	p.F250F		NM_003956	NP_003947	O95992	CH25H_HUMAN	cholesterol 25-hydroxylase	250					bile acid biosynthetic process|fatty acid biosynthetic process|sterol biosynthetic process	cytosol|endoplasmic reticulum membrane|integral to membrane	cholesterol 25-hydroxylase activity|iron ion binding				0		Colorectal(252;0.0161)		GBM - Glioblastoma multiforme(2;0.000133)		AGTACGGAGCGAAGTTGCAGT	0.582													19	16					0	0	1	0	0
CH25H	9023	broad.mit.edu	37	10	90966983	90966983	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:90966983G>A	uc001kfz.2	-	1	89	c.67C>T	c.(67-69)CTC>TTC	p.L23F		NM_003956	NP_003947	O95992	CH25H_HUMAN	cholesterol 25-hydroxylase	23					bile acid biosynthetic process|fatty acid biosynthetic process|sterol biosynthetic process	cytosol|endoplasmic reticulum membrane|integral to membrane	cholesterol 25-hydroxylase activity|iron ion binding				0		Colorectal(252;0.0161)		GBM - Glioblastoma multiforme(2;0.000133)		TGGTCCCAGAGGGGCTGCAGG	0.627													6	6					0	0	1	0	0
IFIT1B	439996	broad.mit.edu	37	10	91143629	91143629	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:91143629C>T	uc001kgh.2	+	2	639	c.559C>T	c.(559-561)CGC>TGC	p.R187C	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	187	TPR 4.						binding				0						CACCGTCTATCGCCTGGATAA	0.438													110	229					0	0	1	0	0
IFIT1B	439996	broad.mit.edu	37	10	91144246	91144246	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:91144246G>A	uc001kgh.2	+	2	1256	c.1176G>A	c.(1174-1176)GGG>GGA	p.G392G	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	392	TPR 7.						binding				0						AACATCATGGGAAATCTCAAG	0.363													28	74					0	0	1	0	0
SLC16A12	387700	broad.mit.edu	37	10	91198420	91198420	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:91198420G>A	uc001kgm.2	-	6	1270	c.879C>T	c.(877-879)TCC>TCT	p.S293S	SLC16A12_uc001kgl.2_5'Flank	NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	293	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						CTCCAAGTATGGACATAAGAA	0.443													22	98					0	0	1	0	0
SLC16A12	387700	broad.mit.edu	37	10	91198523	91198523	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:91198523G>A	uc001kgm.2	-	6	1167	c.776C>T	c.(775-777)TCC>TTC	p.S259F	SLC16A12_uc001kgl.2_5'Flank	NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	259	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						AAACAGAACGGAGACGGCTAA	0.448													25	55					0	0	1	0	0
KIF20B	9585	broad.mit.edu	37	10	91469768	91469768	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:91469768C>T	uc001kgs.1	+	5	508	c.436C>T	c.(436-438)CGT>TGT	p.R146C	KIF20B_uc001kgr.1_Missense_Mutation_p.R146C	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	146	Kinesin-motor.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						AGGACAGAGTCGTCTGATTTT	0.353													58	105					0	0	1	0	0
PPP1R3C	5507	broad.mit.edu	37	10	93390138	93390138	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:93390138C>T	uc001kho.2	-	2	632	c.500G>A	c.(499-501)CGA>CAA	p.R167Q		NM_005398	NP_005389	Q9UQK1	PPR3C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	167	Interaction with EPM2A.|CBM21.						protein serine/threonine phosphatase activity			breast(1)	1		Colorectal(252;0.235)				TGTCACTGTTCGCTCTTGCAA	0.413													41	117					0	0	1	0	0
BTAF1	9044	broad.mit.edu	37	10	93742422	93742422	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:93742422C>T	uc001khr.2	+	18	2225	c.2127C>T	c.(2125-2127)TCC>TCT	p.S709S	BTAF1_uc001khs.1_Silent_p.S379S|BTAF1_uc001kht.1_Silent_p.S147S	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	709					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				CAGCTGAATCCCTGGGCCAGT	0.408													34	84					0	0	1	0	0
CPEB3	22849	broad.mit.edu	37	10	93902842	93902843	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:93902842_93902843GG>AA	uc001khw.1	-	6	1569_1570	c.1396_1397CC>TT	c.(1396-1398)CCT>TTT	p.P466F	CPEB3_uc001khu.1_Missense_Mutation_p.P475F|CPEB3_uc001khv.1_Missense_Mutation_p.P452F|CPEB3_uc010qnn.1_Missense_Mutation_p.P452F	NM_014912	NP_055727	Q8NE35	CPEB3_HUMAN	cytoplasmic polyadenylation element binding	466	RRM 1.						nucleotide binding|RNA binding				0		Colorectal(252;0.0869)				TACTACGAGAGGTCCAAACCTG	0.401													22	57					0	0	1	0	0
CPEB3	22849	broad.mit.edu	37	10	93902868	93902868	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:93902868G>A	uc001khw.1	-	6	1544	c.1371C>T	c.(1369-1371)ATC>ATT	p.I457I	CPEB3_uc001khu.1_Silent_p.I466I|CPEB3_uc001khv.1_Silent_p.I443I|CPEB3_uc010qnn.1_Silent_p.I443I	NM_014912	NP_055727	Q8NE35	CPEB3_HUMAN	cytoplasmic polyadenylation element binding	457	RRM 1.						nucleotide binding|RNA binding				0		Colorectal(252;0.0869)				AGCTGGCAGTGATCTCATCTA	0.358													14	35					0	0	1	0	0
MARCH5	54708	broad.mit.edu	37	10	94109519	94109519	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:94109519C>T	uc001khx.1	+	5	977	c.645C>T	c.(643-645)GTC>GTT	p.V215V	MARCH5_uc010qno.1_Silent_p.V111V	NM_017824	NP_060294	Q9NX47	MARH5_HUMAN	membrane-associated ring finger (C3HC4) 5	215	Helical; (Potential).				cell aging|protein autoubiquitination|protein localization in mitochondrion|protein polyubiquitination|regulation of mitochondrial fission	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	GTPase binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1						GAGCCCTTGTCTTTCCTACTA	0.403													95	175					0	0	1	0	0
IDE	3416	broad.mit.edu	37	10	94297234	94297234	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:94297234G>A	uc001kia.2	-	2	248	c.172C>T	c.(172-174)CCT>TCT	p.P58S		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	58					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTGTCTTCAGGAGACTTGGTA	0.388													10	135					0	0	1	0	0
EXOC6	54536	broad.mit.edu	37	10	94653169	94653169	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:94653169C>T	uc001kig.2	+	2	231	c.165C>T	c.(163-165)ATC>ATT	p.I55I	EXOC6_uc010qnr.1_Silent_p.I71I|EXOC6_uc001kie.2_Silent_p.I50I|EXOC6_uc001kif.3_Silent_p.I55I|EXOC6_uc009xub.2_Silent_p.I55I|EXOC6_uc009xuc.2_Silent_p.I55I	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	55					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				ATGCTTGTATCCGTAATCATG	0.338													41	92					0	0	1	0	0
EXOC6	54536	broad.mit.edu	37	10	94708030	94708030	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:94708030G>A	uc001kig.2	+	14	1377	c.1311_splice	c.e14-1	p.R437_splice	EXOC6_uc010qnr.1_Splice_Site_p.R453_splice|EXOC6_uc001kie.2_Splice_Site_p.R432_splice|EXOC6_uc009xub.2_Splice_Site_p.R437_splice|EXOC6_uc009xuc.2_Splice_Site_p.R334_splice|EXOC6_uc001kih.2_Splice_Site|EXOC6_uc001kii.2_Missense_Mutation_p.R11K	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a						protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				TTTCCTAACAGGGACATTTTT	0.318													30	45					0	0	1	0	0
MYOF	26509	broad.mit.edu	37	10	95069791	95069791	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95069791G>A	uc001kin.2	-	53	6256	c.6133C>T	c.(6133-6135)CTC>TTC	p.L2045F	MYOF_uc001kio.2_Missense_Mutation_p.L2032F|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	2045	Helical; (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						AAAGAGTAGAGGAGCACGGCC	0.562													19	33					0	0	1	0	0
MYOF	26509	broad.mit.edu	37	10	95132727	95132727	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95132727G>A	uc001kin.2	-	24	2540	c.2417C>T	c.(2416-2418)TCT>TTT	p.S806F	MYOF_uc001kio.2_Missense_Mutation_p.S793F|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	806	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						GTATTTTCCAGATGCATTCTC	0.453													10	134					0	0	1	0	0
MYOF	26509	broad.mit.edu	37	10	95159188	95159188	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95159188G>A	uc001kin.2	-	13	1305	c.1182C>T	c.(1180-1182)CTC>CTT	p.L394L	MYOF_uc001kio.2_Silent_p.L394L|MYOF_uc001kip.3_Silent_p.L394L|MYOF_uc009xuf.2_Silent_p.L376L	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	394	Cytoplasmic (Potential).|C2 3.				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						AAGGATCCACGAGATTTTTCT	0.348													19	36					0	0	1	0	0
GPR120	338557	broad.mit.edu	37	10	95335847	95335847	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95335847G>A	uc010qnt.1	+	2	624	c.568_splice	c.e2-1	p.E190_splice	GPR120_uc010qnu.1_Splice_Site_p.E190_splice	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120						negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				TTTGTAACTAGGAAATTTCGA	0.438													42	94					0	0	1	0	0
GPR120	338557	broad.mit.edu	37	10	95338948	95338948	+	Silent	SNP	C	T	T	rs140807207	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95338948C>T	uc010qnt.1	+	3	785	c.729C>T	c.(727-729)GTC>GTT	p.V243V	GPR120_uc010qnu.1_Intron	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	243	Cytoplasmic (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				CAAGAGCTGTCGTGACTCACA	0.473													22	64					0	0	1	0	0
GPR120	338557	broad.mit.edu	37	10	95347003	95347003	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95347003C>T	uc010qnt.1	+	4	827	c.771C>T	c.(769-771)CTC>CTT	p.L257L	GPR120_uc010qnu.1_Silent_p.L241L	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	257	Cytoplasmic (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				GGAAGAGGCTCACGGTAAGCC	0.567													26	53					0	0	1	0	0
GPR120	338557	broad.mit.edu	37	10	95347184	95347184	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95347184C>T	uc010qnt.1	+	4	1008	c.952C>T	c.(952-954)CTC>TTC	p.L318F	GPR120_uc010qnu.1_Missense_Mutation_p.L302F	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	318	Helical; Name=7; (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				CTGGCCGTCCCTCTTCTTCTG	0.488													60	255					0	0	1	0	0
PDE6C	5146	broad.mit.edu	37	10	95372892	95372892	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95372892C>T	uc001kiu.3	+	1	548	c.410C>T	c.(409-411)CCA>CTA	p.P137L		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	137	GAF 1.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				GTTGTGTTTCCATTGGACATT	0.527													12	63					0	0	1	0	0
PDE6C	5146	broad.mit.edu	37	10	95380460	95380460	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95380460C>T	uc001kiu.3	+	2	690	c.552C>T	c.(550-552)ATC>ATT	p.I184I		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	184	GAF 1.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				CAACCCCGATCGTGGTGGGCA	0.443													33	84					0	0	1	0	0
PDE6C	5146	broad.mit.edu	37	10	95422344	95422344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95422344G>A	uc001kiu.3	+	20	2449	c.2311G>A	c.(2311-2313)GAA>AAA	p.E771K		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	771					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				CAAAAGAGATGAATTACCTAA	0.279													15	57					0	0	1	0	0
LGI1	9211	broad.mit.edu	37	10	95518576	95518576	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95518576C>T	uc001kjc.3	+	2	611	c.275C>T	c.(274-276)TCG>TTG	p.S92L	LGI1_uc010qnv.1_Missense_Mutation_p.S92L|LGI1_uc001kjd.3_Missense_Mutation_p.S92L|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_RNA	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	92	LRR 1.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				TTCACGCCATCGCTGCAGCTC	0.269													30	52					0	0	1	0	0
LGI1	9211	broad.mit.edu	37	10	95549901	95549901	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95549901C>T	uc001kjc.3	+	5	813	c.477C>T	c.(475-477)TTC>TTT	p.F159F	LGI1_uc010qnv.1_Silent_p.F111F|LGI1_uc001kjd.3_Silent_p.F159F|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_RNA	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	159	LRR 3.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				AAGATATTTTCAAAGGCCTGG	0.333													24	64					0	0	1	0	0
LGI1	9211	broad.mit.edu	37	10	95552654	95552654	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95552654G>A	uc001kjc.3	+	6	994	c.658G>A	c.(658-660)GAT>AAT	p.D220N	LGI1_uc010qnv.1_Missense_Mutation_p.D172N|LGI1_uc001kjd.3_Missense_Mutation_p.D220N|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_RNA	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	220	LRRCT.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				GAAGGATTTTGATTGCATCAT	0.388													42	99					0	0	1	0	0
LGI1	9211	broad.mit.edu	37	10	95557267	95557267	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95557267G>A	uc001kjc.3	+	8	1717	c.1381G>A	c.(1381-1383)GGA>AGA	p.G461R	LGI1_uc010qnv.1_Missense_Mutation_p.G413R|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	461	EAR 5.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				CATGAAATGGGGAGGCTCCTC	0.443													21	72					0	0	1	0	0
TMEM20	159371	broad.mit.edu	37	10	95660749	95660749	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95660749C>T	uc001kjg.1	+	3	661	c.600C>T	c.(598-600)ATC>ATT	p.I200I	TMEM20_uc001kji.2_Intron|TMEM20_uc001kjf.1_Silent_p.I199I|TMEM20_uc001kjh.2_Intron|TMEM20_uc010qnw.1_Silent_p.I183I|TMEM20_uc001kjj.2_Intron	NM_001134658	NP_001128130	Q2M3R5	TMM20_HUMAN	transmembrane protein 20 isoform 1	200	DUF6 1.|Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;3.46e-05)|Renal(717;0.018)|Ovarian(717;0.0228)|all_hematologic(284;0.189)		STAD - Stomach adenocarcinoma(243;0.00345)		TGATCCTTATCGTGAGACCAC	0.448													22	54					0	0	1	0	0
TMEM20	159371	broad.mit.edu	37	10	95660812	95660812	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95660812C>T	uc001kjg.1	+	3	724	c.663C>T	c.(661-663)CAC>CAT	p.H221H	TMEM20_uc001kji.2_Intron|TMEM20_uc001kjf.1_Silent_p.H220H|TMEM20_uc001kjh.2_Intron|TMEM20_uc010qnw.1_Silent_p.H204H|TMEM20_uc001kjj.2_Intron	NM_001134658	NP_001128130	Q2M3R5	TMM20_HUMAN	transmembrane protein 20 isoform 1	221						integral to membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;3.46e-05)|Renal(717;0.018)|Ovarian(717;0.0228)|all_hematologic(284;0.189)		STAD - Stomach adenocarcinoma(243;0.00345)		ATTCAGGCCACCTTAAGGGAA	0.443													36	56					0	0	1	0	0
PIPSL	266971	broad.mit.edu	37	10	95718849	95718849	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95718849C>T	uc009xuj.2	-	1	2824	c.2305G>A	c.(2305-2307)GAA>AAA	p.E769K		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						ATCTTCTCTTCCTCAGTCATA	0.532													18	38					0	0	1	0	0
PIPSL	266971	broad.mit.edu	37	10	95719456	95719456	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95719456C>T	uc009xuj.2	-	1	2217	c.1698G>A	c.(1696-1698)AAG>AAA	p.K566K		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						TGATCTTGCCCTTGGGTTGGA	0.532													14	26					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95790940	95790940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95790940G>A	uc001kjk.2	+	2	771	c.137G>A	c.(136-138)CGA>CAA	p.R46Q	PLCE1_uc010qnx.1_Missense_Mutation_p.R46Q	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	46					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ACTGTCAGACGAAGTGGGGAG	0.433													34	97					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95791225	95791225	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95791225C>T	uc001kjk.2	+	2	1056	c.422C>T	c.(421-423)CCT>CTT	p.P141L	PLCE1_uc010qnx.1_Missense_Mutation_p.P141L	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	141					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ACTGGAATTCCTTCTCCACTG	0.413													32	75					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95791484	95791484	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95791484G>A	uc001kjk.2	+	2	1315	c.681G>A	c.(679-681)AAG>AAA	p.K227K	PLCE1_uc010qnx.1_Silent_p.K227K	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	227					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AGAAGCAAAAGAAAAACTATG	0.388													15	57					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95791659	95791659	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95791659G>A	uc001kjk.2	+	2	1490	c.856G>A	c.(856-858)GAC>AAC	p.D286N	PLCE1_uc010qnx.1_Missense_Mutation_p.D286N	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	286					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				TTGTAGGAAAGACTTTACTGA	0.378													32	128					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95791924	95791924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:95791924C>T	uc001kjk.2	+	2	1755	c.1121C>T	c.(1120-1122)CCT>CTT	p.P374L	PLCE1_uc010qnx.1_Missense_Mutation_p.P374L	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	374					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CCCTTACTGCCTTGTGGGAGA	0.483													20	66					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	96014663	96014663	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96014663C>T	uc001kjk.2	+	11	4045	c.3411C>T	c.(3409-3411)ATC>ATT	p.I1137I	PLCE1_uc010qnx.1_Silent_p.I1137I|PLCE1_uc001kjm.2_Silent_p.I829I	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1137					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				TGAATGCCATCGCTAACCCTC	0.522													109	255					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	96025687	96025687	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96025687G>A	uc001kjk.2	+	16	4887	c.4253G>A	c.(4252-4254)GGA>GAA	p.G1418E	PLCE1_uc010qnx.1_Missense_Mutation_p.G1402E|PLCE1_uc001kjm.2_Missense_Mutation_p.G1110E	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1418	PI-PLC X-box.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CAGCTCAAAGGAGAATCCTCG	0.423													34	71					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	96028737	96028737	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96028737G>A	uc001kjk.2	+	17	4967	c.4333G>A	c.(4333-4335)GAT>AAT	p.D1445N	PLCE1_uc010qnx.1_Missense_Mutation_p.D1429N|PLCE1_uc001kjm.2_Missense_Mutation_p.D1137N	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1445	PI-PLC X-box.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GGACGGAGACGATGGGATGCC	0.453													17	71					0	0	1	0	0
TBC1D12	23232	broad.mit.edu	37	10	96267073	96267073	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96267073C>T	uc001kjr.2	+	7	1754	c.1569C>T	c.(1567-1569)TTC>TTT	p.F523F		NM_015188	NP_056003	O60347	TBC12_HUMAN	TBC1 domain family, member 12	523	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		Colorectal(252;0.0429)				GGAAAAGTTTCAGTGAAACAA	0.308													16	85					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96447569	96447569	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96447569C>T	uc001kjv.3	+	2	537	c.211C>T	c.(211-213)CTG>TTG	p.L71L	CYP2C18_uc001kjw.3_Silent_p.L71L|CYP2C19_uc009xus.1_5'Flank|CYP2C19_uc010qny.1_5'Flank	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	71					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GTATTTTGGCCTGAAGCCCAT	0.418													29	249					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96466679	96466679	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96466679C>T	uc001kjv.3	+	5	1107	c.781C>T	c.(781-783)CGG>TGG	p.R261W	CYP2C18_uc001kjw.3_Intron|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	261					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GAACAGTGCTCGGGACTTTAT	0.328													31	69					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96495170	96495170	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96495170C>T	uc001kjv.3	+	9	1768	c.1442C>T	c.(1441-1443)CCC>CTC	p.P481L	CYP2C18_uc001kjw.3_Missense_Mutation_p.P422L|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	481					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CGTGTGCCACCCTTGTACCAG	0.493													23	185					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96522620	96522620	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96522620C>T	uc010qnz.1	+	1	158	c.158C>T	c.(157-159)TCC>TTC	p.S53F	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	53					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	GTCAGCAAATCCTTAACCAAT	0.403													30	66					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96602718	96602719	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96602718_96602719CC>TT	uc010qnz.1	+	7	1086_1087	c.1086_1087CC>TT	c.(1084-1089)ATCCCC>ATTTCC	p.P363S	CYP2C19_uc010qny.1_Missense_Mutation_p.P341S	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	363					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TCGACCTCATCCCCACCAGCCT	0.535													44	139					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96602760	96602760	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96602760C>T	uc010qnz.1	+	7	1128	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	CYP2C19_uc010qny.1_Silent_p.F354F	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	376					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	ACGTTAAATTCAGAAACTACC	0.473													37	138					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96609693	96609693	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96609693C>T	uc010qnz.1	+	8	1169	c.1169C>T	c.(1168-1170)TCC>TTC	p.S390F	CYP2C19_uc010qny.1_Missense_Mutation_p.S368F	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	390					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	ATATTAACTTCCCTCACTTCT	0.393													78	166					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96612497	96612497	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96612497G>A	uc010qnz.1	+	9	1299	c.1299G>A	c.(1297-1299)CGG>CGA	p.R433R	CYP2C19_uc010qny.1_Silent_p.R411R	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	433					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CAGGAAAACGGATTTGTGTGG	0.433													32	94					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96698454	96698454	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96698454G>A	uc001kka.3	+	1	40	c.15G>A	c.(13-15)GTG>GTA	p.V5V	CYP2C9_uc009xut.2_Silent_p.V5V|CYP2C9_uc001kjz.2_Silent_p.V5V	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	5					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	ATTCTCTTGTGGTCCTTGTGC	0.493													94	239					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96698514	96698514	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96698514G>A	uc001kka.3	+	1	100	c.75G>A	c.(73-75)GGG>GGA	p.G25G	CYP2C9_uc009xut.2_Silent_p.G25G|CYP2C9_uc001kjz.2_Silent_p.G25G	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	25					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	AGAGCTCTGGGAGAGGAAAAC	0.453													12	184					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96698548	96698548	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96698548C>T	uc001kka.3	+	1	134	c.109C>T	c.(109-111)CCA>TCA	p.P37S	CYP2C9_uc009xut.2_Missense_Mutation_p.P37S|CYP2C9_uc001kjz.2_Missense_Mutation_p.P37S	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	37					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CACTCCTCTCCCAGTGATTGG	0.458													47	129					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96701966	96701966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96701966G>A	uc001kka.3	+	3	374	c.349G>A	c.(349-351)GGA>AGA	p.G117R	CYP2C9_uc009xut.2_Missense_Mutation_p.G117R|CYP2C9_uc001kjz.2_Missense_Mutation_p.G117R	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	117					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TTTCAGCAATGGAAAGAAATG	0.522													35	69					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96702033	96702033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96702033G>A	uc001kka.3	+	3	441	c.416G>A	c.(415-417)AGG>AAG	p.R139K	CYP2C9_uc009xut.2_Missense_Mutation_p.R139K|CYP2C9_uc001kjz.2_Missense_Mutation_p.R139K	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	139					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	ATGGGGAAGAGGAGCATTGAG	0.498													50	105					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96702058	96702058	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96702058G>A	uc001kka.3	+	3	466	c.441G>A	c.(439-441)GAG>GAA	p.E147E	CYP2C9_uc009xut.2_Silent_p.E147E|CYP2C9_uc001kjz.2_Silent_p.E147E	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	147					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GTGTTCAAGAGGAAGCCCGCT	0.502													29	150					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96745809	96745809	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96745809C>T	uc001kka.3	+	8	1194	c.1169C>T	c.(1168-1170)TCC>TTC	p.S390F	CYP2C9_uc009xut.2_Missense_Mutation_p.S388F	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	390					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	ATATTAATTTCCCTGACTTCT	0.323													47	134					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96745889	96745889	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96745889G>A	uc001kka.3	+	8	1274	c.1249G>A	c.(1249-1251)GGC>AGC	p.G417S	CYP2C9_uc009xut.2_Missense_Mutation_p.G415S	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	417			G -> D.		exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GGATGAAGGTGGCAATTTTAA	0.363													54	109					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96824616	96824616	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96824616G>A	uc001kkb.2	-	4	678	c.583C>T	c.(583-585)CTC>TTC	p.L195F	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.L125F|CYP2C8_uc010qob.1_Missense_Mutation_p.L109F|CYP2C8_uc010qoc.1_Missense_Mutation_p.L93F|CYP2C8_uc010qod.1_Missense_Mutation_p.L109F	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	195					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	ATCAGGGTGAGAAAATTCTGA	0.408													26	97					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96827076	96827076	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96827076G>A	uc001kkb.2	-	3	465	c.370C>T	c.(370-372)CGG>TGG	p.R124W	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.R54W|CYP2C8_uc010qob.1_Missense_Mutation_p.R38W|CYP2C8_uc010qoc.1_Missense_Mutation_p.R22W|CYP2C8_uc010qod.1_Missense_Mutation_p.R38W	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	124					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	GAGAAACGCCGGATCTCCTTC	0.488													37	105					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96827087	96827087	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96827087C>T	uc001kkb.2	-	3	454	c.359G>A	c.(358-360)TGG>TAG	p.W120*	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Nonsense_Mutation_p.W50*|CYP2C8_uc010qob.1_Nonsense_Mutation_p.W34*|CYP2C8_uc010qoc.1_Nonsense_Mutation_p.W18*|CYP2C8_uc010qod.1_Nonsense_Mutation_p.W34*	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	120					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	GATCTCCTTCCATCTCTTTCC	0.488													45	77					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96827096	96827096	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96827096C>T	uc001kkb.2	-	3	445	c.350G>A	c.(349-351)GGA>GAA	p.G117E	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.G47E|CYP2C8_uc010qob.1_Missense_Mutation_p.G31E|CYP2C8_uc010qoc.1_Missense_Mutation_p.G15E|CYP2C8_uc010qod.1_Missense_Mutation_p.G31E	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	117					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	CCATCTCTTTCCATTGCTGGA	0.488													27	77					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96827110	96827110	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96827110G>A	uc001kkb.2	-	3	431	c.336C>T	c.(334-336)ATC>ATT	p.I112I	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Silent_p.I42I|CYP2C8_uc010qob.1_Silent_p.I26I|CYP2C8_uc010qoc.1_Silent_p.I10I|CYP2C8_uc010qod.1_Silent_p.I26I	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	112					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	TGCTGGAAATGATTCCTAATA	0.488													17	51					0	0	1	0	0
C10orf129	142827	broad.mit.edu	37	10	96967005	96967005	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96967005G>A	uc001kke.2	+	4	569	c.444G>A	c.(442-444)AAG>AAA	p.K148K	C10orf129_uc009xuu.1_Silent_p.K58K	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	148					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		TGACTGCCAAGAAAATTCGCT	0.463													10	77					0	0	1	0	0
C10orf129	142827	broad.mit.edu	37	10	96967012	96967012	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96967012C>T	uc001kke.2	+	4	576	c.451C>T	c.(451-453)CGC>TGC	p.R151C	C10orf129_uc009xuu.1_Missense_Mutation_p.R61C	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	151					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		CAAGAAAATTCGCTATCAATT	0.458													19	74					0	0	1	0	0
C10orf129	142827	broad.mit.edu	37	10	96970493	96970493	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96970493C>T	uc001kke.2	+	5	823	c.698C>T	c.(697-699)CCC>CTC	p.P233L	C10orf129_uc009xuu.1_Missense_Mutation_p.P143L	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	233	ATP (By similarity).				fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		ACAGGAGCTCCCAAAATGGTC	0.507													24	57					0	0	1	0	0
C10orf129	142827	broad.mit.edu	37	10	96970536	96970536	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96970536C>T	uc001kke.2	+	5	866	c.741C>T	c.(739-741)TTC>TTT	p.F247F	C10orf129_uc009xuu.1_Silent_p.F157F	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	247					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GAATGGGATTCAGCCAGGCTT	0.493													21	59					0	0	1	0	0
C10orf129	142827	broad.mit.edu	37	10	96971644	96971644	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96971644G>A	uc001kke.2	+	6	890	c.765G>A	c.(763-765)ATG>ATA	p.M255I	C10orf129_uc009xuu.1_Missense_Mutation_p.M165I	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	255					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GACGGTGGATGGATCTCCAGC	0.483													12	42					0	0	1	0	0
C10orf129	142827	broad.mit.edu	37	10	96971650	96971650	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96971650C>T	uc001kke.2	+	6	896	c.771C>T	c.(769-771)CTC>CTT	p.L257L	C10orf129_uc009xuu.1_Silent_p.L167L	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	257					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GGATGGATCTCCAGCCAACAG	0.473													18	37					0	0	1	0	0
C10orf129	142827	broad.mit.edu	37	10	96971770	96971770	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:96971770C>T	uc001kke.2	+	6	1016	c.891C>T	c.(889-891)TTC>TTT	p.F297F	C10orf129_uc009xuu.1_Silent_p.F207F	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	297					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		TGCCAACCTTCTGCCCTGAGA	0.502													19	51					0	0	1	0	0
PDLIM1	9124	broad.mit.edu	37	10	97006991	97006991	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97006991G>A	uc001kkh.2	-	5	775	c.666C>T	c.(664-666)ATC>ATT	p.I222I	PDLIM1_uc001kki.2_Silent_p.I222I|PDLIM1_uc009xuv.2_Silent_p.I222I|PDLIM1_uc001kkj.1_Silent_p.I222I	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	222					response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		CAGACTCCAGGATTTCCTGCA	0.453													49	94					0	0	1	0	0
SORBS1	10580	broad.mit.edu	37	10	97143773	97143773	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97143773G>A	uc001kkp.2	-	15	1552	c.1507C>T	c.(1507-1509)CGC>TGC	p.R503C	SORBS1_uc001kkk.2_Missense_Mutation_p.R81C|SORBS1_uc001kkl.2_Missense_Mutation_p.R105C|SORBS1_uc001kkn.2_Missense_Mutation_p.R290C|SORBS1_uc001kkm.2_Missense_Mutation_p.R359C|SORBS1_uc001kko.2_Missense_Mutation_p.R525C|SORBS1_uc001kkq.2_Missense_Mutation_p.R388C|SORBS1_uc001kkr.2_Missense_Mutation_p.R293C|SORBS1_uc001kks.2_Missense_Mutation_p.R293C|SORBS1_uc001kkt.2_RNA|SORBS1_uc001kku.2_Missense_Mutation_p.R334C|SORBS1_uc001kkv.2_Missense_Mutation_p.R425C|SORBS1_uc001kkw.2_Missense_Mutation_p.R457C|SORBS1_uc010qoe.1_Missense_Mutation_p.R302C|SORBS1_uc010qof.1_Missense_Mutation_p.R655C	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	503					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		GAGGAAGAGCGGGCTGGGAGG	0.517													33	87					0	0	1	0	0
SORBS1	10580	broad.mit.edu	37	10	97170471	97170471	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97170471G>A	uc001kkp.2	-	8	919	c.874C>T	c.(874-876)CCA>TCA	p.P292S	SORBS1_uc001kkl.2_5'UTR|SORBS1_uc001kkn.2_Missense_Mutation_p.P125S|SORBS1_uc001kkm.2_Missense_Mutation_p.P148S|SORBS1_uc001kko.2_Missense_Mutation_p.P292S|SORBS1_uc001kkq.2_Missense_Mutation_p.P223S|SORBS1_uc001kkr.2_Missense_Mutation_p.P128S|SORBS1_uc001kks.2_Missense_Mutation_p.P128S|SORBS1_uc001kkt.2_RNA|SORBS1_uc001kku.2_Missense_Mutation_p.P169S|SORBS1_uc001kkv.2_Missense_Mutation_p.P260S|SORBS1_uc001kkw.2_Missense_Mutation_p.P292S|SORBS1_uc010qoe.1_Missense_Mutation_p.P137S|SORBS1_uc010qof.1_Missense_Mutation_p.P490S	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	292				PSVS -> SSEC (in Ref. 1; AAD27647 and 3; AAF22175).	focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		CTAACTGATGGAAAGGCTTGG	0.428													19	71					0	0	1	0	0
SORBS1	10580	broad.mit.edu	37	10	97192238	97192238	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97192238G>A	uc001kkp.2	-	4	313	c.268C>T	c.(268-270)CCT>TCT	p.P90S	SORBS1_uc001kkn.2_Missense_Mutation_p.P46S|SORBS1_uc001kkm.2_Missense_Mutation_p.P78S|SORBS1_uc001kko.2_Missense_Mutation_p.P90S|SORBS1_uc001kkq.2_Missense_Mutation_p.P90S|SORBS1_uc001kkr.2_Missense_Mutation_p.P58S|SORBS1_uc001kks.2_Missense_Mutation_p.P58S|SORBS1_uc001kkt.2_RNA|SORBS1_uc001kku.2_Missense_Mutation_p.P90S|SORBS1_uc001kkv.2_Missense_Mutation_p.P58S|SORBS1_uc001kkw.2_Missense_Mutation_p.P90S|SORBS1_uc010qoe.1_Missense_Mutation_p.P58S|SORBS1_uc010qof.1_Missense_Mutation_p.P58S|SORBS1_uc001kkx.1_Missense_Mutation_p.P58S	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	90					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		GTTTCCTGAGGGCTCGCAGGG	0.572													26	119					0	0	1	0	0
SORBS1	10580	broad.mit.edu	37	10	97192281	97192281	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97192281G>A	uc001kkp.2	-	4	270	c.225C>T	c.(223-225)GCC>GCT	p.A75A	SORBS1_uc001kkn.2_Silent_p.A31A|SORBS1_uc001kkm.2_Silent_p.A63A|SORBS1_uc001kko.2_Silent_p.A75A|SORBS1_uc001kkq.2_Silent_p.A75A|SORBS1_uc001kkr.2_Silent_p.A43A|SORBS1_uc001kks.2_Silent_p.A43A|SORBS1_uc001kkt.2_RNA|SORBS1_uc001kku.2_Silent_p.A75A|SORBS1_uc001kkv.2_Silent_p.A43A|SORBS1_uc001kkw.2_Silent_p.A75A|SORBS1_uc010qoe.1_Silent_p.A43A|SORBS1_uc010qof.1_Silent_p.A43A|SORBS1_uc001kkx.1_Silent_p.A43A	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	75					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		AGGAAGACGAGGCCCGGAGAG	0.527													44	68					0	0	1	0	0
ENTPD1	953	broad.mit.edu	37	10	97604280	97604280	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97604280G>A	uc001klh.3	+	5	785	c.461G>A	c.(460-462)AGG>AAG	p.R154K	ENTPD1_uc001kle.1_Missense_Mutation_p.R161K|ENTPD1_uc001kli.3_Missense_Mutation_p.R161K|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.R166K|ENTPD1_uc010qok.1_Missense_Mutation_p.R46K|ENTPD1_uc010qol.1_Missense_Mutation_p.R46K|ENTPD1_uc010qom.1_Missense_Mutation_p.R154K|ENTPD1_uc010qon.1_Missense_Mutation_p.R16K|ENTPD1_uc009xva.2_Missense_Mutation_p.R16K|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	154	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		GTGGTGGAGAGGAGCCTCAGC	0.458													15	188					0	0	1	0	0
ENTPD1	953	broad.mit.edu	37	10	97620289	97620289	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97620289G>A	uc001klh.3	+	8	1462	c.1138G>A	c.(1138-1140)GAA>AAA	p.E380K	ENTPD1_uc001kli.3_Missense_Mutation_p.E387K|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.E392K|ENTPD1_uc010qok.1_Missense_Mutation_p.E272K|ENTPD1_uc010qol.1_Missense_Mutation_p.E272K|ENTPD1_uc010qom.1_Missense_Mutation_p.E339K|ENTPD1_uc010qon.1_Missense_Mutation_p.E242K|ENTPD1_uc009xva.2_Missense_Mutation_p.E242K|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	380	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		AGTCTCTCAGGAAAAGGTGAC	0.433													14	34					0	0	1	0	0
CC2D2B	387707	broad.mit.edu	37	10	97779519	97779519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97779519G>A	uc001kll.2	+	8	917	c.718G>A	c.(718-720)GAA>AAA	p.E240K	uc001klg.1_Intron|uc001klj.1_Intron|CC2D2B_uc001klk.2_Intron|CC2D2B_uc010qop.1_Missense_Mutation_p.E240K|uc009xvb.1_RNA	NM_001001732	NP_001001732	Q6DHV5	C2D2B_HUMAN	coiled-coil and C2 domain containing 2B isoform	240										ovary(1)	1		Colorectal(252;0.158)		Epithelial(162;7.08e-08)|all cancers(201;2.71e-06)		CTATTCAAAGGAAAGTTTCTG	0.333													62	165					0	0	1	0	0
ZNF518A	9849	broad.mit.edu	37	10	97918838	97918838	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97918838C>T	uc001klp.2	+	6	3616	c.2759C>T	c.(2758-2760)CCA>CTA	p.P920L	ZNF518A_uc001klo.1_Missense_Mutation_p.P390L|ZNF518A_uc001klq.2_Missense_Mutation_p.P920L|ZNF518A_uc001klr.2_Missense_Mutation_p.P920L	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	920					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		ATGCAGAGTCCACTTTTAAAT	0.333													5	52					0	0	1	0	0
ZNF518A	9849	broad.mit.edu	37	10	97919993	97919993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97919993C>T	uc001klp.2	+	6	4771	c.3914C>T	c.(3913-3915)CCT>CTT	p.P1305L	ZNF518A_uc001klo.1_Missense_Mutation_p.P775L|ZNF518A_uc001klq.2_Missense_Mutation_p.P1305L|ZNF518A_uc001klr.2_Missense_Mutation_p.P1305L	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	1305					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		AAGGCAAAACCTGAAGATGTC	0.383													12	24					0	0	1	0	0
ZNF518A	9849	broad.mit.edu	37	10	97920070	97920070	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97920070C>T	uc001klp.2	+	6	4848	c.3991C>T	c.(3991-3993)CCT>TCT	p.P1331S	ZNF518A_uc001klo.1_Missense_Mutation_p.P801S|ZNF518A_uc001klq.2_Missense_Mutation_p.P1331S|ZNF518A_uc001klr.2_Missense_Mutation_p.P1331S	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	1331					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		GCGGCTTTTCCCTTTTAGTTC	0.393													27	54					0	0	1	0	0
BLNK	29760	broad.mit.edu	37	10	97987291	97987291	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97987291G>A	uc001kls.3	-	5	414	c.236C>T	c.(235-237)TCG>TTG	p.S79L	BLNK_uc001kme.3_5'UTR|BLNK_uc001klt.3_5'UTR|BLNK_uc009xvc.2_Intron|BLNK_uc001klu.3_5'UTR|BLNK_uc001klv.3_Missense_Mutation_p.S79L|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Missense_Mutation_p.S79L|BLNK_uc001kly.3_Missense_Mutation_p.S79L|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Missense_Mutation_p.S79L|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_5'UTR|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	79					B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		CTCTGAGTCCGAGTGCTCATC	0.592													16	130					0	0	1	0	0
BLNK	29760	broad.mit.edu	37	10	97990571	97990571	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:97990571C>T	uc001kls.3	-	4	361	c.183G>A	c.(181-183)GAG>GAA	p.E61E	BLNK_uc001kme.3_Intron|BLNK_uc001klt.3_Intron|BLNK_uc009xvc.2_Intron|BLNK_uc001klu.3_5'UTR|BLNK_uc001klv.3_Silent_p.E61E|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Silent_p.E61E|BLNK_uc001kly.3_Silent_p.E61E|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Silent_p.E61E|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_5'UTR|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	61					B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		ACCACTGCTCCTCTTCGTCAG	0.542													4	13					0	0	1	0	0
BLNK	29760	broad.mit.edu	37	10	98002508	98002508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98002508C>T	uc001kls.3	-	3	324	c.146G>A	c.(145-147)CGA>CAA	p.R49Q	BLNK_uc001kme.3_Intron|BLNK_uc001klt.3_Intron|BLNK_uc009xvc.2_RNA|BLNK_uc001klu.3_Intron|BLNK_uc001klv.3_Missense_Mutation_p.R49Q|BLNK_uc001klw.3_Intron|BLNK_uc001klx.3_Missense_Mutation_p.R49Q|BLNK_uc001kly.3_Missense_Mutation_p.R49Q|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Missense_Mutation_p.R49Q|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_Intron|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	49					B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		GTAGTCCCTTCGAGGAACACT	0.388													44	81					0	0	1	0	0
BLNK	29760	broad.mit.edu	37	10	98006765	98006765	+	Missense_Mutation	SNP	C	T	T	rs143109144	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98006765C>T	uc001kls.3	-	2	266	c.88G>A	c.(88-90)GGT>AGT	p.G30S	BLNK_uc001kme.3_5'UTR|BLNK_uc001klt.3_5'UTR|BLNK_uc009xvc.2_RNA|BLNK_uc001klu.3_5'UTR|BLNK_uc001klv.3_Missense_Mutation_p.G30S|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Missense_Mutation_p.G30S|BLNK_uc001kly.3_Missense_Mutation_p.G30S|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Missense_Mutation_p.G30S|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_5'UTR|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	30					B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		ATTATTCCACCTTCATTGTTT	0.249													17	89					0	0	1	0	0
BLNK	29760	broad.mit.edu	37	10	98006768	98006768	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98006768C>T	uc001kls.3	-	2	263	c.85G>A	c.(85-87)GAA>AAA	p.E29K	BLNK_uc001kme.3_5'UTR|BLNK_uc001klt.3_5'UTR|BLNK_uc009xvc.2_RNA|BLNK_uc001klu.3_5'UTR|BLNK_uc001klv.3_Missense_Mutation_p.E29K|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Missense_Mutation_p.E29K|BLNK_uc001kly.3_Missense_Mutation_p.E29K|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Missense_Mutation_p.E29K|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_5'UTR|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	29					B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		ATTCCACCTTCATTGTTTTTA	0.254													25	81					0	0	1	0	0
DNTT	1791	broad.mit.edu	37	10	98084132	98084132	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98084132G>A	uc001kmf.2	+	6	1030	c.860G>A	c.(859-861)CGA>CAA	p.R287Q	DNTT_uc001kmg.2_Missense_Mutation_p.R287Q	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	287	Mediates interaction with DNTTIP2.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		AAATTTACACGAATGCAGAAA	0.453													30	104					0	0	1	0	0
OPALIN	93377	broad.mit.edu	37	10	98105809	98105809	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98105809C>T	uc001kmj.2	-	6	754	c.315G>A	c.(313-315)GTG>GTA	p.V105V	OPALIN_uc010qor.1_Silent_p.V95V|OPALIN_uc001kmi.2_Silent_p.V95V|OPALIN_uc001kmk.2_Silent_p.V82V|OPALIN_uc010qos.1_RNA	NM_033207	NP_149984	Q96PE5	OPALI_HUMAN	transmembrane protein 10 isoform a	105						Golgi apparatus|integral to membrane|plasma membrane					0						CTACAGTCTTCACATATATGT	0.453													56	150					0	0	1	0	0
OPALIN	93377	broad.mit.edu	37	10	98108055	98108055	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98108055C>T	uc001kmj.2	-	5	679	c.240G>A	c.(238-240)AAG>AAA	p.K80K	OPALIN_uc010qor.1_Silent_p.K70K|OPALIN_uc001kmi.2_Silent_p.K70K|OPALIN_uc001kmk.2_Silent_p.K57K|OPALIN_uc010qos.1_RNA	NM_033207	NP_149984	Q96PE5	OPALI_HUMAN	transmembrane protein 10 isoform a	80						Golgi apparatus|integral to membrane|plasma membrane					0						CCTCAGATATCTTGGGATTGT	0.333													17	62					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98144361	98144361	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98144361C>T	uc001kml.1	-	16	2403	c.2177G>A	c.(2176-2178)AGG>AAG	p.R726K		NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	726	CUB 3.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		GAAGTGGGCCCTGAAGCCGCG	0.627													43	102					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98146820	98146820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98146820G>A	uc001kml.1	-	14	1968	c.1742C>T	c.(1741-1743)TCC>TTC	p.S581F		NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	581	EGF-like 1; calcium-binding (Potential).			EVDECSWPDHGGCEHRCV -> GKKKKKKKKKKKKKKKKK (in Ref. 5; AAH13871).	cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		ATCTGGCCAGGAACACTCATC	0.597													21	54					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98155083	98155083	+	Silent	SNP	C	T	T	rs151335014		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98155083C>T	uc001kml.1	-	13	1813	c.1587G>A	c.(1585-1587)ACG>ACA	p.T529T	TLL2_uc009xvf.1_Silent_p.T507T	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	529	CUB 2.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		CACTCTCTTCCGTGGGGCCAT	0.527													29	72					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98155765	98155766	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98155765_98155766CC>TT	uc001kml.1	-	12	1622_1623	c.1396_1397GG>AA	c.(1396-1398)GGA>AAA	p.G466K	TLL2_uc009xvf.1_Missense_Mutation_p.G444K	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	466	CUB 2.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		GTTCATGTCTCCCCCGCAGGTA	0.54											OREG0020398	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	79					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98192614	98192614	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98192614C>T	uc001kml.1	-	4	696	c.470G>A	c.(469-471)AGG>AAG	p.R157K	TLL2_uc009xvf.1_Intron	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	157	Metalloprotease (By similarity).				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		AGGCCATATCCTCTCTGTCCT	0.582													26	77					0	0	1	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98355350	98355350	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98355350G>A	uc001kmq.2	-	17	2530	c.2402C>T	c.(2401-2403)CCA>CTA	p.P801L	PIK3AP1_uc001kmo.2_Missense_Mutation_p.P400L|PIK3AP1_uc001kmp.2_Missense_Mutation_p.P623L	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	801	Pro-rich.					cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		TCCTCTGGGTGGAACAGGTGG	0.428													18	42					0	0	1	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98369528	98369528	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98369528G>A	uc001kmq.2	-	14	2239	c.2111C>T	c.(2110-2112)CCC>CTC	p.P704L	PIK3AP1_uc001kmo.2_Missense_Mutation_p.P303L|PIK3AP1_uc001kmp.2_Missense_Mutation_p.P526L	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	704						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		CGTCCTAGGGGGAATGACACT	0.577													111	255					0	0	1	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98408551	98408551	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98408551G>A	uc001kmq.2	-	7	1178	c.1050C>T	c.(1048-1050)AAC>AAT	p.N350N	PIK3AP1_uc001kmp.2_Silent_p.N172N	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	350						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		AGGCAGTGAGGTTCTTCAGTC	0.507													10	38					0	0	1	0	0
LCOR	84458	broad.mit.edu	37	10	98715483	98715483	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98715483C>T	uc001kms.1	+	8	1627	c.1106C>T	c.(1105-1107)TCC>TTC	p.S369F	LCOR_uc001kmr.2_Missense_Mutation_p.S369F|C10orf12_uc009xvg.1_Intron|LCOR_uc001kmt.1_Missense_Mutation_p.S369F|LCOR_uc001kmu.1_Missense_Mutation_p.S369F	NM_032440	NP_115816	Q96JN0	LCOR_HUMAN	ligand dependent nuclear receptor corepressor	369	H-T-H motif (By similarity).|HTH psq-type.					nucleus	DNA binding			ovary(3)	3		Colorectal(252;0.162)		Epithelial(162;4.43e-09)|all cancers(201;2.96e-07)		ATGAGTGTTTCCAAAGCTCAG	0.438													26	40					0	0	1	0	0
C10orf12	26148	broad.mit.edu	37	10	98743903	98743903	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98743903C>T	uc001kmv.2	+	1	2863	c.2756C>T	c.(2755-2757)TCA>TTA	p.S919L		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	919										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		TATCCCAGTTCACTACAGGCT	0.468													38	84					0	0	1	0	0
C10orf12	26148	broad.mit.edu	37	10	98744436	98744436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98744436C>T	uc001kmv.2	+	1	3396	c.3289C>T	c.(3289-3291)CCT>TCT	p.P1097S		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	1097										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AGGCAGCAGCCCTCCAGATAG	0.512													9	58					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98763931	98763931	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98763931G>A	uc001kmw.2	-	34	4011	c.3759C>T	c.(3757-3759)GCC>GCT	p.A1253A		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1253	Laminin G-like.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		TCTGGTCAAAGGCAACCAGCT	0.557													47	208					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98764462	98764462	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98764462G>A	uc001kmw.2	-	33	3950	c.3698C>T	c.(3697-3699)TCT>TTT	p.S1233F		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1233	Laminin G-like.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GTAGATGGCAGAGCTGGGGTA	0.597													17	56					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98807467	98807467	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98807467G>A	uc001kmw.2	-	16	1866	c.1614C>T	c.(1612-1614)ATC>ATT	p.I538I	SLIT1_uc009xvh.1_Silent_p.I548I	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	538	LRRNT 3.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		TGGACTGGGGGATGCGCTCAG	0.627													29	71					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98808818	98808818	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98808818G>A	uc001kmw.2	-	14	1611	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F	SLIT1_uc009xvh.1_Silent_p.F463F	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	453	LRRCT 2.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		TGGTGCGCAGGAAGTCTGCCA	0.587													26	77					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98819884	98819884	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98819884G>A	uc001kmw.2	-	10	1225	c.973C>T	c.(973-975)CCT>TCT	p.P325S	SLIT1_uc009xvh.1_Missense_Mutation_p.P325S	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	325	LRR 7.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GCTCCAGGAGGGATGGACTTG	0.622													30	75					0	0	1	0	0
ARHGAP19	84986	broad.mit.edu	37	10	98995059	98995059	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:98995059G>A	uc001knb.2	-	9	1228	c.1199C>T	c.(1198-1200)TCA>TTA	p.S400L	ARHGAP19_uc001kmy.2_RNA|ARHGAP19_uc001kna.2_Missense_Mutation_p.S391L|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Missense_Mutation_p.S371L|ARHGAP19_uc009xvk.2_Missense_Mutation_p.S194L	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	400					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		CTGGGTCAATGATTGCTTATT	0.418													43	109					0	0	1	0	0
RRP12	23223	broad.mit.edu	37	10	99153491	99153491	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:99153491G>A	uc001knf.2	-	4	619	c.480C>T	c.(478-480)TCC>TCT	p.S160S	RRP12_uc009xvm.2_5'Flank|RRP12_uc010qou.1_Intron|RRP12_uc009xvn.2_Intron	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	160						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		GGGACTCCGGGGACTCCACTG	0.527													18	60					0	0	1	0	0
C10orf62	414157	broad.mit.edu	37	10	99350007	99350007	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:99350007C>T	uc001koa.2	+	1	524	c.353C>T	c.(352-354)TCC>TTC	p.S118F	DHDPSL_uc001knx.2_Intron|DHDPSL_uc001kny.2_Intron|DHDPSL_uc001knz.2_Intron|PI4K2A_uc010qoy.1_Intron	NM_001009997	NP_001009997	Q5T681	CJ062_HUMAN	hypothetical protein LOC414157	118							protein binding				0		Colorectal(252;0.162)		Epithelial(162;9.58e-11)|all cancers(201;8.62e-09)		AAAGCCCCATCCACTGATGAG	0.627													26	48					0	0	1	0	0
CRTAC1	55118	broad.mit.edu	37	10	99655718	99655719	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:99655718_99655719CC>TT	uc001kou.1	-	10	1596_1597	c.1240_1241GG>AA	c.(1240-1242)GGA>AAA	p.G414K	CRTAC1_uc001kov.2_Missense_Mutation_p.G403K|CRTAC1_uc001kot.1_Missense_Mutation_p.G204K	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	414	FG-GAP 4; atypical.					proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		CATCCCGTCTCCGTCGAAGTCG	0.584													6	68					0	0	1	0	0
C10orf28	27291	broad.mit.edu	37	10	99968552	99968552	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:99968552C>T	uc001kow.3	+	4	976	c.681C>T	c.(679-681)GTC>GTT	p.V227V	C10orf28_uc001kox.3_Silent_p.V227V|C10orf28_uc001koy.3_Silent_p.V227V|C10orf28_uc009xvx.2_Silent_p.V227V|C10orf28_uc009xvy.2_Intron|C10orf28_uc001koz.3_Intron	NM_014472	NP_055287	Q4KMY3	Q4KMY3_HUMAN	growth inhibition and differentiation related	227							nucleotide binding			large_intestine(1)|skin(1)	2		Colorectal(252;0.234)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)		TTAGTTCTGTCATGAAACCTG	0.353													33	59					0	0	1	0	0
PYROXD2	84795	broad.mit.edu	37	10	100144721	100144721	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:100144721C>T	uc001kpc.2	-	15	1744	c.1658G>A	c.(1657-1659)GGA>GAA	p.G553E	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	553							oxidoreductase activity			central_nervous_system(1)	1						AGCCCCACTTCCACAGAGATA	0.612													8	20					0	0	1	0	0
PYROXD2	84795	broad.mit.edu	37	10	100148243	100148243	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:100148243G>A	uc001kpc.2	-	13	1401	c.1315C>T	c.(1315-1317)CCT>TCT	p.P439S	PYROXD2_uc001kpb.2_Intron|PYROXD2_uc001kpd.2_Intron	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	439							oxidoreductase activity			central_nervous_system(1)	1						AGCGAGGAAGGGATGCAGAGC	0.622													8	13					0	0	1	0	0
PYROXD2	84795	broad.mit.edu	37	10	100157211	100157211	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:100157211G>A	uc001kpc.2	-	6	602	c.516C>T	c.(514-516)GCC>GCT	p.A172A	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA|PYROXD2_uc010qpe.1_Silent_p.A172A|MIR1287_hsa-mir-1287|MI0006349_5'Flank	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	172							oxidoreductase activity			central_nervous_system(1)	1						GAGGGTCAATGGCTAATGCCA	0.587													21	55					0	0	1	0	0
PYROXD2	84795	broad.mit.edu	37	10	100159990	100159990	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:100159990G>A	uc001kpc.2	-	5	426	c.340C>T	c.(340-342)CGA>TGA	p.R114*	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA|PYROXD2_uc010qpe.1_Nonsense_Mutation_p.R114*	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	114							oxidoreductase activity			central_nervous_system(1)	1						TAGGGGTTTCGAAGATGAAGC	0.522													20	44					0	0	1	0	0
CNNM1	26507	broad.mit.edu	37	10	101147941	101147941	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101147941G>A	uc001kpp.3	+	9	2846	c.2557G>A	c.(2557-2559)GAG>AAG	p.E853K	CNNM1_uc010qpi.1_Missense_Mutation_p.E874K|CNNM1_uc009xwf.2_Intron|CNNM1_uc009xwg.2_Missense_Mutation_p.E253K	NM_020348	NP_065081	Q9NRU3	CNNM1_HUMAN	cyclin M1	853					ion transport	integral to membrane|plasma membrane					0		Colorectal(252;0.234)		Epithelial(162;6.82e-10)|all cancers(201;5.62e-08)		AAGCCCCAGCGAGGTAGTGTA	0.607													16	59					0	0	1	0	0
GOT1	2805	broad.mit.edu	37	10	101180539	101180539	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101180539G>A	uc001kpr.2	-	2	350	c.142C>T	c.(142-144)CCC>TCC	p.P48S	GOT1_uc009xwh.2_RNA|GOT1_uc009xwi.2_Missense_Mutation_p.P48S|GOT1_uc001kpq.1_5'UTR	NM_002079	NP_002070	P17174	AATC_HUMAN	aspartate aminotransferase 1	48					aspartate catabolic process|cellular response to insulin stimulus|gluconeogenesis|response to glucocorticoid stimulus	cytosol	L-aspartate:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding				0		Ovarian(717;0.028)|Colorectal(252;0.234)		Epithelial(162;4.76e-10)|all cancers(201;3.84e-08)	L-Aspartic Acid(DB00128)|L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	AAAACCCAGGGATGGCAGTCA	0.473													28	117					0	0	1	0	0
ABCC2	1244	broad.mit.edu	37	10	101567960	101567960	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101567960C>T	uc001kqf.2	+	13	1928	c.1789C>T	c.(1789-1791)CCC>TCC	p.P597S		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	597	ABC transmembrane type-1 1.|Helical; Name=11; (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GAGCATGCTTCCCATGATGAT	0.483													58	161					0	0	1	0	0
ABCC2	1244	broad.mit.edu	37	10	101590503	101590503	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101590503C>T	uc001kqf.2	+	21	2917	c.2778C>T	c.(2776-2778)TCC>TCT	p.S926S		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	926	Cytoplasmic (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	ATCTGAAGTCCCTGAGAAACT	0.448													34	63					0	0	1	0	0
ABCC2	1244	broad.mit.edu	37	10	101606801	101606801	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101606801G>A	uc001kqf.2	+	30	4369	c.4230G>A	c.(4228-4230)TTG>TTA	p.L1410L		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	1410	Cytoplasmic (By similarity).|ABC transporter 2.					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GGAAGGCCTTGGAGCTGGCTC	0.517													63	183					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101715232	101715232	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101715232G>A	uc001kqj.2	-	4	2091	c.1999C>T	c.(1999-2001)CGT>TGT	p.R667C	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	667					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		CAGGTAGGACGGTGTCGAGAT	0.597													11	31					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101715887	101715887	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101715887G>A	uc001kqj.2	-	4	1436	c.1344C>T	c.(1342-1344)CCC>CCT	p.P448P	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	448					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		TTGCTTCTAGGGGAAGAAGGT	0.502													38	146					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101731860	101731860	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101731860G>A	uc001kqj.2	-	2	114	c.22C>T	c.(22-24)CGA>TGA	p.R8*		NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	8	SH3 1.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		AAAATGGCTCGAACCACTGAG	0.403													29	103					0	0	1	0	0
CPN1	1369	broad.mit.edu	37	10	101816796	101816796	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101816796C>T	uc001kql.2	-	6	1245	c.985G>A	c.(985-987)GAA>AAA	p.E329K		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	329	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		ATTAGGGCTTCCCGATTACCC	0.463													82	252					0	0	1	0	0
CPN1	1369	broad.mit.edu	37	10	101835746	101835746	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101835746G>A	uc001kql.2	-	2	602	c.342C>T	c.(340-342)ATC>ATT	p.I114I		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	114	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		TGAGCTGGACGATGCGCTGGT	0.612													24	66					0	0	1	0	0
ERLIN1	10613	broad.mit.edu	37	10	101912014	101912014	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:101912014G>A	uc001kqn.3	-	11	1272	c.921C>T	c.(919-921)TTC>TTT	p.F307F	ERLIN1_uc001kqm.3_Silent_p.F72F|ERLIN1_uc001kqo.3_Silent_p.F307F|ERLIN1_uc010qpm.1_Silent_p.F223F	NM_006459	NP_006450	O75477	ERLN1_HUMAN	ER lipid raft associated 1	305	Lumenal (Potential).				ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane	protein binding				0		Colorectal(252;0.234)		Epithelial(162;3.85e-10)|all cancers(201;3.25e-08)		AGGAGTCCACGAACATGTTAG	0.458													17	76					0	0	1	0	0
PKD2L1	9033	broad.mit.edu	37	10	102051118	102051118	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102051118C>T	uc001kqx.1	-	12	2330	c.1947G>A	c.(1945-1947)GGG>GGA	p.G649G	PKD2L1_uc009xwm.1_Silent_p.G602G	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	649	Cytoplasmic (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		GAATACGATTCCCATCTCTGT	0.502													48	67					0	0	1	0	0
PKD2L1	9033	broad.mit.edu	37	10	102056928	102056928	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102056928G>A	uc001kqx.1	-	6	1377	c.994C>T	c.(994-996)CCA>TCA	p.P332S	PKD2L1_uc009xwm.1_Missense_Mutation_p.P285S	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	332	Helical; (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		TGCCAGGATGGGATGGCACCT	0.562													23	76					0	0	1	0	0
PKD2L1	9033	broad.mit.edu	37	10	102057327	102057327	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102057327G>A	uc001kqx.1	-	5	1151	c.768C>T	c.(766-768)TTC>TTT	p.F256F	PKD2L1_uc009xwm.1_Silent_p.F209F	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	256	Extracellular (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		CCCAGTGGGAGAAGCCCCCCA	0.592													8	40					0	0	1	0	0
PKD2L1	9033	broad.mit.edu	37	10	102089764	102089764	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102089764C>T	uc001kqx.1	-	1	480	c.97G>A	c.(97-99)GGG>AGG	p.G33R	PKD2L1_uc009xwm.1_5'UTR	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	33	Cytoplasmic (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		CTCAGCGTCCCGTGTGGGGAA	0.632													39	73					0	0	1	0	0
WNT8B	7479	broad.mit.edu	37	10	102240871	102240871	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102240871G>A	uc001krb.2	+	4	472	c.358G>A	c.(358-360)GGG>AGG	p.G120R		NM_003393	NP_003384	Q93098	WNT8B_HUMAN	wingless-type MMTV integration site family,	120					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|determination of dorsal identity|endoderm development|eye development|gastrulation|hypothalamus development|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|otic placode formation|positive regulation of gene expression|response to estradiol stimulus|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(1)|breast(1)|large_intestine(1)|skin(1)	4		Colorectal(252;0.117)		Epithelial(162;1.87e-10)|all cancers(201;1.64e-08)		CTCCCGCAACGGGCAACTGGG	0.488													30	53					0	0	1	0	0
SEC31B	25956	broad.mit.edu	37	10	102250605	102250605	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102250605G>A	uc001krc.1	-	20	2610	c.2508C>T	c.(2506-2508)ACC>ACT	p.T836T	SEC31B_uc010qpo.1_Silent_p.T835T|SEC31B_uc001krd.1_Silent_p.T373T|SEC31B_uc001krf.1_Silent_p.T373T|SEC31B_uc001kre.1_Silent_p.T373T	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	836	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		ATGACTGAGGGGTGAAAACCC	0.443													10	54					0	0	1	0	0
SEC31B	25956	broad.mit.edu	37	10	102269264	102269264	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102269264G>A	uc001krc.1	-	4	310	c.208C>T	c.(208-210)CAC>TAC	p.H70Y	SEC31B_uc010qpo.1_Missense_Mutation_p.H70Y|SEC31B_uc001krd.1_Intron|SEC31B_uc001krf.1_Intron|SEC31B_uc001kre.1_5'UTR|SEC31B_uc001krg.1_5'Flank|SEC31B_uc010qpp.1_Missense_Mutation_p.H70Y|SEC31B_uc009xwn.1_Missense_Mutation_p.H70Y|SEC31B_uc009xwo.1_Missense_Mutation_p.H70Y|SEC31B_uc010qpq.1_Intron|SEC31B_uc010qpr.1_Intron	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	70	WD 1.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		ACCAGCTTGTGAAACCTATAA	0.502											OREG0020441	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	15					0	0	1	0	0
PAX2	5076	broad.mit.edu	37	10	102584444	102584444	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102584444C>T	uc001krk.3	+	9	1578	c.1028C>T	c.(1027-1029)CCT>CTT	p.P343L	PAX2_uc001krl.3_Missense_Mutation_p.P320L|PAX2_uc001krm.3_Missense_Mutation_p.P343L|PAX2_uc001kro.3_Missense_Mutation_p.P320L|PAX2_uc001krn.3_Missense_Mutation_p.P320L|PAX2_uc010qps.1_Missense_Mutation_p.P319L|PAX2_uc001krp.1_Missense_Mutation_p.P316L	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	343					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		GGTTACCCCCCTCACGTGCCC	0.612													60	135					0	0	1	0	0
FAM178A	55719	broad.mit.edu	37	10	102676652	102676652	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102676652C>T	uc001krt.3	+	3	1052	c.510C>T	c.(508-510)TCC>TCT	p.S170S	FAM178A_uc001krr.1_Silent_p.S170S|FAM178A_uc001krs.2_Silent_p.S170S|FAM178A_uc001kru.1_Silent_p.S106S	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	170											0						AACATCGATCCCCAGAGAGAA	0.388													22	53					0	0	1	0	0
SEMA4G	57715	broad.mit.edu	37	10	102743580	102743580	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102743580G>A	uc001krw.1	+	14	2608	c.2224G>A	c.(2224-2226)GAG>AAG	p.E742K	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krx.2_Intron|MRPL43_uc001kry.1_Intron|MRPL43_uc010qpu.1_Intron|MRPL43_uc001krz.1_Intron|MRPL43_uc001ksa.1_Intron|MRPL43_uc001ksb.1_Intron	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	737	Cytoplasmic (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		GTGTCCTGGAGAGGAAGATGA	0.672													5	9					0	0	1	0	0
PDZD7	79955	broad.mit.edu	37	10	102789950	102789950	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102789950G>A	uc001kso.1	-	2	242	c.27C>T	c.(25-27)TTC>TTT	p.F9F	PDZD7_uc001ksn.2_Silent_p.F9F|SFXN3_uc001ksp.2_5'Flank|SFXN3_uc001ksq.2_5'Flank|SFXN3_uc010qpx.1_5'Flank	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	9						cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		CCAGTGGGTCGAAGCCCACTG	0.667													4	16					0	0	1	0	0
KAZALD1	81621	broad.mit.edu	37	10	102822738	102822738	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102822738C>T	uc001ksr.2	+	2	1314	c.389C>T	c.(388-390)TCG>TTG	p.S130L	KAZALD1_uc001kss.3_RNA|KAZALD1_uc001kst.1_Missense_Mutation_p.S130L	NM_030929	NP_112191	Q96I82	KAZD1_HUMAN	Kazal-type serine peptidase inhibitor domain 1	130	Kazal-like.				cell differentiation|multicellular organismal development|ossification|regulation of cell growth		insulin-like growth factor binding				0				Epithelial(162;6.21e-09)|all cancers(201;3.14e-07)		GCCTGTCGTTCGCAGAGTCCG	0.687													8	21					0	0	1	0	0
TLX1NB	100038246	broad.mit.edu	37	10	102849587	102849587	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102849587C>T	uc001ksv.2	-	3	1373	c.76G>A	c.(76-78)GAG>AAG	p.E26K		NM_001085398	NP_001078867	P0CAT3	TLXNB_HUMAN	TLX1 divergent	26											0						CCCATGGCCTCTTGGGAAAGG	0.657													3	15					0	0	1	0	0
LBX1	10660	broad.mit.edu	37	10	102987154	102987154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:102987154C>T	uc001ksx.2	-	2	864	c.719G>A	c.(718-720)GGC>GAC	p.G240D	uc010qpy.1_5'Flank	NM_006562	NP_006553	P52954	LBX1_HUMAN	ladybird homeobox 1	240					muscle organ development		sequence-specific DNA binding				0		Colorectal(252;0.234)		Epithelial(162;3.22e-09)|all cancers(201;1.79e-07)		CTTCGGGGCGCCTGGGGGGAG	0.756													7	19					0	0	1	0	0
POLL	27343	broad.mit.edu	37	10	103339570	103339570	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103339570G>A	uc001ktg.1	-	8	2134	c.1368C>T	c.(1366-1368)TTC>TTT	p.F456F	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_Silent_p.F129F|POLL_uc001kte.1_Silent_p.F148F|POLL_uc001kth.1_Silent_p.F181F|POLL_uc001kti.1_Silent_p.F456F|POLL_uc001ktj.1_Silent_p.F456F|POLL_uc001ktf.2_Silent_p.F364F|POLL_uc001ktk.1_Silent_p.F195F|POLL_uc010qqa.1_Silent_p.F195F|POLL_uc010qqb.1_RNA|POLL_uc001ktm.2_Silent_p.F456F|POLL_uc001ktl.2_Silent_p.F368F|POLL_uc010qqc.1_Silent_p.F148F	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	456					DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		CATCTGTGAGGAACCCTGGCC	0.622								DNA_polymerases_(catalytic_subunits)					7	42					0	0	1	0	0
POLL	27343	broad.mit.edu	37	10	103345860	103345861	+	Missense_Mutation	DNP	GG	AA	AA	rs61757734	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103345860_103345861GG>AA	uc001ktg.1	-	2	934_935	c.168_169CC>TT	c.(166-171)GCCCGG>GCTTGG	p.R57W	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_5'Flank|POLL_uc001kte.1_5'Flank|POLL_uc001kth.1_Intron|POLL_uc001kti.1_Missense_Mutation_p.R57W|POLL_uc001ktj.1_Missense_Mutation_p.R57W|POLL_uc001ktf.2_Missense_Mutation_p.R57W|POLL_uc001ktk.1_Intron|POLL_uc010qqa.1_Intron|POLL_uc010qqb.1_Intron|POLL_uc001ktm.2_Missense_Mutation_p.R57W|POLL_uc001ktl.2_5'UTR|POLL_uc010qqc.1_5'UTR|POLL_uc010qqd.1_5'UTR|DPCD_uc001ktn.2_5'Flank	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	57	BRCT.				DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		AGTTCTGCCCGGGCTCGTCCAA	0.535								DNA_polymerases_(catalytic_subunits)					18	43					0	0	1	0	0
FBXW4	6468	broad.mit.edu	37	10	103433321	103433321	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103433321G>A	uc001kto.2	-	3	812	c.466C>T	c.(466-468)CTG>TTG	p.L156L		NM_022039	NP_071322	P57775	FBXW4_HUMAN	F-box and WD repeat domain containing 4	156					ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	ubiquitin ligase complex				skin(1)	1		Colorectal(252;0.123)		Epithelial(162;4.35e-08)|all cancers(201;1.92e-06)		AAGACTCCCAGAGGCCGACGA	0.512													42	166					0	0	1	0	0
MGEA5	10724	broad.mit.edu	37	10	103550824	103550824	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103550824G>A	uc001ktv.2	-	14	2726	c.2283C>T	c.(2281-2283)TCC>TCT	p.S761S	MGEA5_uc001ktu.2_RNA|MGEA5_uc010qqe.1_Silent_p.S708S|MGEA5_uc009xws.2_Silent_p.S694S	NM_012215	NP_036347	O60502	NCOAT_HUMAN	meningioma expressed antigen 5 (hyaluronidase)	761	Histone acetyltransferase activity (By similarity).|Required for histone H4 binding (By similarity).				glycoprotein catabolic process	cytoplasm|nucleus	histone acetyltransferase activity|hyalurononglucosaminidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.207)		Epithelial(162;4.67e-09)|all cancers(201;2.54e-07)		CCAGGCTGAGGGAAAGCAGCC	0.423													37	73					0	0	1	0	0
C10orf76	79591	broad.mit.edu	37	10	103755098	103755098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103755098G>A	uc009xwy.1	-	16	1267	c.1165C>T	c.(1165-1167)CAC>TAC	p.H389Y		NM_024541	NP_078817	Q5T2E6	CJ076_HUMAN	hypothetical protein LOC79591	389						integral to membrane					0		Colorectal(252;0.123)		Epithelial(162;2.41e-08)|all cancers(201;6.41e-07)		TTGCCACTGTGAAGCCTGTGT	0.378													14	152					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103897786	103897786	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103897786C>T	uc001kum.2	+	2	372	c.333C>T	c.(331-333)AGC>AGT	p.S111S	PPRC1_uc001kun.2_Missense_Mutation_p.A25V|PPRC1_uc010qqj.1_Silent_p.S111S|PPRC1_uc009xxa.2_5'Flank	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	111					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		ATTTTGGGAGCCTTGGAGAGG	0.527													18	32					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103898452	103898452	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103898452C>T	uc001kum.2	+	3	458	c.419C>T	c.(418-420)TCT>TTT	p.S140F	PPRC1_uc001kun.2_Intron|PPRC1_uc010qqj.1_Missense_Mutation_p.S140F|PPRC1_uc009xxa.2_5'Flank	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	140					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		AATGCAGATTCTGAGAACCTT	0.532													25	54					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103900460	103900460	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103900460C>T	uc001kum.2	+	5	2234	c.2195C>T	c.(2194-2196)TCT>TTT	p.S732F	PPRC1_uc001kun.2_Missense_Mutation_p.S612F|PPRC1_uc010qqj.1_Missense_Mutation_p.S732F|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	732					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GTTGTGGATTCTCTGAAAATT	0.547													48	105					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103908594	103908594	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103908594C>T	uc001kum.2	+	12	4677	c.4638C>T	c.(4636-4638)TTC>TTT	p.F1546F	PPRC1_uc001kun.2_Silent_p.F1424F|PPRC1_uc010qqj.1_Silent_p.F1282F|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1546	RRM.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GGGTGGTCTTCATTGGAAAGA	0.483													21	40					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103908622	103908622	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103908622C>T	uc001kum.2	+	12	4705	c.4666C>T	c.(4666-4668)CGA>TGA	p.R1556*	PPRC1_uc001kun.2_Nonsense_Mutation_p.R1434*|PPRC1_uc010qqj.1_Nonsense_Mutation_p.R1292*|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1556	RRM.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		CCGCATGACTCGATCAGAGCT	0.488													23	42					0	0	1	0	0
NOLC1	9221	broad.mit.edu	37	10	103912198	103912198	+	Missense_Mutation	SNP	C	T	T	rs145813353		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103912198C>T	uc001kuo.2	+	1	266	c.31C>T	c.(31-33)CCC>TCC	p.P11S	NOLC1_uc001kup.2_Missense_Mutation_p.P11S|NOLC1_uc001kuq.2_Missense_Mutation_p.P11S|NOLC1_uc009xxb.1_5'UTR|NOLC1_uc001kur.2_5'UTR	NM_004741	NP_004732	Q14978	NOLC1_HUMAN	nucleolar and coiled-body phosphoprotein 1	11	LisH.				mitosis|rRNA processing	cytoplasm|nucleolus	ATP binding|GTP binding|protein binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;5.19e-08)|all cancers(201;9.43e-07)		CCGCGTGGTTCCCAGCGACCT	0.622													14	114					0	0	1	0	0
PITX3	5309	broad.mit.edu	37	10	103990562	103990562	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:103990562C>T	uc001kuu.1	-	4	772	c.618G>A	c.(616-618)CCG>CCA	p.P206P		NM_005029	NP_005020	O75364	PITX3_HUMAN	paired-like homeodomain 3	206					dopaminergic neuron differentiation|lens morphogenesis in camera-type eye|midbrain development|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Colorectal(252;0.00957)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GCACGGTGCCCGGGGCAGCCG	0.597													4	3					0	0	1	0	0
GBF1	8729	broad.mit.edu	37	10	104129725	104129725	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104129725C>T	uc001kux.1	+	26	3560	c.3320C>T	c.(3319-3321)GCC>GTC	p.A1107V	GBF1_uc001kuy.1_Missense_Mutation_p.A1107V|GBF1_uc001kuz.1_Missense_Mutation_p.A1108V	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1107					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		AAGAGAGTGGCCTTAGAGTGT	0.483													27	58					0	0	1	0	0
GBF1	8729	broad.mit.edu	37	10	104136527	104136527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104136527C>T	uc001kux.1	+	32	4495	c.4255C>T	c.(4255-4257)CGG>TGG	p.R1419W	GBF1_uc001kuy.1_Missense_Mutation_p.R1419W|GBF1_uc001kuz.1_Missense_Mutation_p.R1420W	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1419					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CAAGACTCTCCGGATCTTTGT	0.552													19	70					0	0	1	0	0
NFKB2	4791	broad.mit.edu	37	10	104159900	104159900	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104159900C>T	uc001kvb.2	+	15	1798	c.1533C>T	c.(1531-1533)ATC>ATT	p.I511I	NFKB2_uc001kva.2_Silent_p.I511I|NFKB2_uc001kvd.2_Silent_p.I511I|NFKB2_uc009xxc.2_Silent_p.I511I	NM_001077494	NP_001070962	Q00653	NFKB2_HUMAN	nuclear factor of kappa light polypeptide gene	511	ANK 1.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	Bcl3/NF-kappaB2 complex|cytosol|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			lung(3)	3		Colorectal(252;0.00957)		Epithelial(162;3.4e-08)|all cancers(201;6.41e-07)		TCTATGTCATCCACCACGCCC	0.632			T	IGH@	B-NHL								7	67					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104164482	104164482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104164482C>T	uc001kvg.1	-	15	3085	c.2558G>A	c.(2557-2559)AGC>AAC	p.S853N	PSD_uc001kve.1_Missense_Mutation_p.S61N|PSD_uc001kvf.1_Missense_Mutation_p.S222N|PSD_uc001kvh.1_Missense_Mutation_p.S474N|PSD_uc009xxd.1_Missense_Mutation_p.S853N	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	853	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		CTGCTCCAGGCTCCTGGGGAG	0.557													33	126					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104164979	104164979	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104164979G>A	uc001kvg.1	-	13	2885	c.2358C>T	c.(2356-2358)TTC>TTT	p.F786F	PSD_uc001kve.1_5'UTR|PSD_uc001kvf.1_Silent_p.F155F|PSD_uc001kvh.1_Silent_p.F407F|PSD_uc009xxd.1_Silent_p.F786F	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	786	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GGATCCCGTGGAAGCTCTTCC	0.667													41	57					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104170845	104170845	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104170845G>A	uc001kvg.1	-	9	2498	c.1971C>T	c.(1969-1971)CTC>CTT	p.L657L	PSD_uc001kvf.1_5'Flank|PSD_uc001kvh.1_Silent_p.L278L|PSD_uc009xxd.1_Silent_p.L657L	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	657	SEC7.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		TGAGCAGCATGAGCGCACAGG	0.647													14	73					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104174648	104174648	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104174648C>T	uc001kvg.1	-	4	1623	c.1096G>A	c.(1096-1098)GAG>AAG	p.E366K	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.E366K	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	366					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		TCAAACACCTCGTCGTCCACA	0.657													36	91					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104174892	104174892	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104174892G>A	uc001kvg.1	-	4	1379	c.852C>T	c.(850-852)TCC>TCT	p.S284S	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Silent_p.S284S	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	284					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GGTCTGTCTCGGAGTACTTGG	0.662													16	45					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104176567	104176568	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104176567_104176568GG>AT	uc001kvg.1	-	2	755_756	c.228_229CC>AT	c.(226-231)CCCCGT>CCATGT	p.R77C	PSD_uc001kvh.1_Intron|PSD_uc009xxd.1_Missense_Mutation_p.R77C|PSD_uc001kvi.1_Missense_Mutation_p.R77C|FBXL15_uc001kvj.1_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	77	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GGAGCAACACGGGGTGAGGGGG	0.673													32	68					0	0	1	0	0
FBXL15	79176	broad.mit.edu	37	10	104182012	104182012	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104182012C>T	uc001kvk.2	+	3	1992	c.676C>T	c.(676-678)CTC>TTC	p.L226F	PSD_uc001kvh.1_5'Flank|PSD_uc009xxd.1_5'Flank|PSD_uc001kvi.1_5'Flank|FBXL15_uc001kvj.1_Missense_Mutation_p.L226F|FBXL15_uc001kvl.1_Missense_Mutation_p.L313F	NM_024326	NP_077302	Q9H469	FXL15_HUMAN	F-box and leucine-rich repeat protein 15	226	LRR 4.|Interaction with SMURF1.				bone mineralization|dorsal/ventral pattern formation|G2/M transition of mitotic cell cycle|positive regulation of BMP signaling pathway|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding			kidney(1)	1		Colorectal(252;0.207)		Epithelial(162;1.19e-08)|all cancers(201;2.65e-07)		CCACCTTGACCTCACCGGCTG	0.672													3	13					0	0	1	0	0
TMEM180	79847	broad.mit.edu	37	10	104230440	104230440	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104230440C>T	uc001kvt.2	+	5	489	c.270C>T	c.(268-270)TCC>TCT	p.S90S	TMEM180_uc001kvs.2_Intron|TMEM180_uc010qql.1_Intron|TMEM180_uc010qqm.1_Intron|TMEM180_uc001kvu.2_Silent_p.S90S	NM_024789	NP_079065	Q14CX5	TM180_HUMAN	transmembrane protein 180	90						integral to membrane				ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		CCGGGCTCTCCTCAAGGGCTG	0.697													32	135					0	0	1	0	0
TMEM180	79847	broad.mit.edu	37	10	104230740	104230740	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104230740C>T	uc001kvt.2	+	5	789	c.570C>T	c.(568-570)TCC>TCT	p.S190S	TMEM180_uc001kvs.2_Intron|TMEM180_uc010qql.1_Intron|TMEM180_uc010qqm.1_Intron|TMEM180_uc001kvu.2_Silent_p.S190S	NM_024789	NP_079065	Q14CX5	TM180_HUMAN	transmembrane protein 180	190						integral to membrane				ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		AGGATTTCTCCTCCTTCCGCG	0.617													48	114					0	0	1	0	0
TMEM180	79847	broad.mit.edu	37	10	104235581	104235581	+	Missense_Mutation	SNP	A	C	C	rs144994591		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104235581A>C	uc001kvt.2	+	10	1613	c.1394A>C	c.(1393-1395)CAG>CCG	p.Q465P	TMEM180_uc010qql.1_Missense_Mutation_p.Q194P|TMEM180_uc010qqm.1_Intron	NM_024789	NP_079065	Q14CX5	TM180_HUMAN	transmembrane protein 180	465						integral to membrane				ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		ACGCTCCGCCAGGGCTGCTTC	0.652													14	37					0	0	1	0	0
ACTR1A	10121	broad.mit.edu	37	10	104241922	104241922	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104241922G>A	uc001kvv.2	-	8	869	c.761C>T	c.(760-762)TCC>TTC	p.S254F	ACTR1A_uc010qqn.1_Missense_Mutation_p.S180F|ACTR1A_uc010qqo.1_Missense_Mutation_p.S207F	NM_005736	NP_005727	P61163	ACTZ_HUMAN	ARP1 actin-related protein 1 homolog A,	254					G2/M transition of mitotic cell cycle|vesicle-mediated transport	centrosome|cytosol|dynactin complex	ATP binding			central_nervous_system(1)	1		Colorectal(252;0.122)		Epithelial(162;5.34e-09)|all cancers(201;1.43e-07)|BRCA - Breast invasive adenocarcinoma(275;0.222)		CCGGAATCGGGAAGGACCAAT	0.582													35	114					0	0	1	0	0
TRIM8	81603	broad.mit.edu	37	10	104404680	104404680	+	Silent	SNP	C	T	T	rs11550359		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104404680C>T	uc001kvz.2	+	1	429	c.306C>T	c.(304-306)CCC>CCT	p.P102P		NM_030912	NP_112174	Q9BZR9	TRIM8_HUMAN	tripartite motif-containing 8	102	B box-type 1.					cytoplasm|PML body	ligase activity|protein homodimerization activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		CCCCGCTGCCCGCGCAGAAGG	0.711													4	10					0	0	1	0	0
SFXN2	118980	broad.mit.edu	37	10	104488271	104488271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104488271C>T	uc001kwb.2	+	4	582	c.416C>T	c.(415-417)TCC>TTC	p.S139F	SFXN2_uc001kwc.2_RNA|SFXN2_uc001kwd.2_RNA	NM_178858	NP_849189	Q96NB2	SFXN2_HUMAN	sideroflexin 2	139					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity				0		Colorectal(252;0.207)		Epithelial(162;4.53e-09)|all cancers(201;1.2e-07)|BRCA - Breast invasive adenocarcinoma(275;0.218)		AATGCGGCTTCCCCCACATCA	0.567													37	72					0	0	1	0	0
SFXN2	118980	broad.mit.edu	37	10	104495636	104495636	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104495636C>T	uc001kwb.2	+	11	1005	c.839C>T	c.(838-840)CCA>CTA	p.P280L	SFXN2_uc001kwc.2_RNA|SFXN2_uc001kwd.2_RNA	NM_178858	NP_849189	Q96NB2	SFXN2_HUMAN	sideroflexin 2	280	Helical; (Potential).				iron ion homeostasis	integral to membrane	cation transmembrane transporter activity				0		Colorectal(252;0.207)		Epithelial(162;4.53e-09)|all cancers(201;1.2e-07)|BRCA - Breast invasive adenocarcinoma(275;0.218)		TTCATGGTGCCAGTGGCGTGT	0.542													11	130					0	0	1	0	0
C10orf26	54838	broad.mit.edu	37	10	104572539	104572539	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104572539C>T	uc001kwe.3	+	4	740	c.480C>T	c.(478-480)CCC>CCT	p.P160P	C10orf26_uc001kwf.3_Silent_p.P181P|C10orf26_uc009xxg.1_Intron	NM_017787	NP_060257	Q9NX94	OPA1L_HUMAN	hypothetical protein LOC54838 isoform 2	160	Pro-rich.					integral to membrane				central_nervous_system(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;6.14e-09)|all cancers(201;1.66e-07)|BRCA - Breast invasive adenocarcinoma(275;0.224)		AGAGCAGCCCCTTGTCTGAGC	0.647													25	32					0	0	1	0	0
CYP17A1	1586	broad.mit.edu	37	10	104592419	104592419	+	Missense_Mutation	SNP	C	T	T	rs142037395	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104592419C>T	uc001kwg.2	-	6	1160	c.988G>A	c.(988-990)GAG>AAG	p.E330K		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	330			Missing (in AH5; complete loss of both 17alpha-hydroxylase and 17,20-lyase activities).		androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	TCAATCTCCTCGTAGAGCTTC	0.532													33	76					0	0	1	0	0
CYP17A1	1586	broad.mit.edu	37	10	104596855	104596855	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104596855C>T	uc001kwg.2	-	1	436	c.264G>A	c.(262-264)AAG>AAA	p.K88K		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	88					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	CCTTGCCCTTCTTAATAAGCA	0.547													34	81					0	0	1	0	0
CNNM2	54805	broad.mit.edu	37	10	104679800	104679800	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:104679800C>T	uc001kwm.2	+	1	1687	c.1563C>T	c.(1561-1563)CCC>CCT	p.P521P	CNNM2_uc001kwn.2_Silent_p.P521P|CNNM2_uc001kwl.2_Silent_p.P521P	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	521	CBS 2.				ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		ATAACCACCCCTTGCACTTTG	0.448													64	145					0	0	1	0	0
LOC729020	729020	broad.mit.edu	37	10	105005945	105005945	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105005945C>T	uc009xxi.2	+	1	302	c.192C>T	c.(190-192)GAC>GAT	p.D64D	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	64					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						TAGGCCAGGACCCTTTCTTTG	0.488													89	229					0	0	1	0	0
LOC729020	729020	broad.mit.edu	37	10	105006081	105006081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105006081G>A	uc009xxi.2	+	1	438	c.328G>A	c.(328-330)GAG>AAG	p.E110K	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	110					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						AGACATTCGGGAGAATGGGAT	0.463													10	122					0	0	1	0	0
INA	9118	broad.mit.edu	37	10	105048321	105048321	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105048321G>T	uc001kws.2	+	3	1444	c.1395G>T	c.(1393-1395)CAG>CAT	p.Q465H		NM_032727	NP_116116	Q16352	AINX_HUMAN	internexin neuronal intermediate filament	465	Tail.				cell differentiation|nervous system development	neurofilament	structural constituent of cytoskeleton			ovary(1)|breast(1)	2				Epithelial(162;3.45e-09)|all cancers(201;9.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.198)		AAACCTCCCAGATAGGGGAAA	0.403													6	76					0.0215528	0.0215551	1	1	0
PDCD11	22984	broad.mit.edu	37	10	105174066	105174066	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105174066C>T	uc001kwy.1	+	11	1437	c.1350C>T	c.(1348-1350)ATC>ATT	p.I450I		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	450					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		ATCATGACATCGAACCTGGGG	0.443													18	37					0	0	1	0	0
PDCD11	22984	broad.mit.edu	37	10	105174832	105174832	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105174832C>T	uc001kwy.1	+	12	1529	c.1442C>T	c.(1441-1443)CCT>CTT	p.P481L		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	481	S1 motif 5.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		GGCCTGGTACCTCCCATGCAC	0.537													22	44					0	0	1	0	0
CALHM1	255022	broad.mit.edu	37	10	105215200	105215200	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105215200C>T	uc001kxe.2	-	2	1000	c.860G>A	c.(859-861)AGG>AAG	p.R287K	CALHM2_uc001kxd.1_5'Flank	NM_001001412	NP_001001412	Q8IU99	CAHM1_HUMAN	calcium homeostasis modulator 1	287						endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel activity|identical protein binding			ovary(1)	1						CAGCTTCTCCCTTTCCTCCTC	0.647													15	27					0	0	1	0	0
CALHM1	255022	broad.mit.edu	37	10	105215432	105215432	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105215432T>A	uc001kxe.2	-	2	768	c.628A>T	c.(628-630)ACG>TCG	p.T210S	CALHM2_uc001kxd.1_5'Flank	NM_001001412	NP_001001412	Q8IU99	CAHM1_HUMAN	calcium homeostasis modulator 1	210						endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel activity|identical protein binding			ovary(1)	1						GCGGCCTGCGTGAAGCAGGGC	0.612													9	62					0	0	1	0	0
CALHM1	255022	broad.mit.edu	37	10	105218356	105218356	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105218356G>A	uc001kxe.2	-	1	293	c.153C>T	c.(151-153)GCC>GCT	p.A51A		NM_001001412	NP_001001412	Q8IU99	CAHM1_HUMAN	calcium homeostasis modulator 1	51	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel activity|identical protein binding			ovary(1)	1						CCGCGCTGTAGGCTGCATTGT	0.612													22	74					0	0	1	0	0
NEURL	9148	broad.mit.edu	37	10	105330779	105330779	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105330779G>A	uc001kxh.2	+	2	646	c.236G>A	c.(235-237)AGC>AAC	p.S79N		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	79	NHR 1.				nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		ATGGACCTCAGCCACAAGGCT	0.647													17	120					0	0	1	0	0
NEURL	9148	broad.mit.edu	37	10	105330819	105330819	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105330819C>T	uc001kxh.2	+	2	686	c.276C>T	c.(274-276)GCC>GCT	p.A92A		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	92	NHR 1.				nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		TCTGCAACGCCATCACCTTCA	0.662													22	57					0	0	1	0	0
NEURL	9148	broad.mit.edu	37	10	105331392	105331392	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105331392C>T	uc001kxh.2	+	3	872	c.462C>T	c.(460-462)GCC>GCT	p.A154A		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	154	NHR 1.				nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		GCTTCTGGGCCAAGGCGCTGC	0.622													18	34					0	0	1	0	0
NEURL	9148	broad.mit.edu	37	10	105344435	105344435	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105344435G>A	uc001kxh.2	+	4	1202	c.792G>A	c.(790-792)GAG>GAA	p.E264E		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	264					nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		ACGGCGACGAGGCCGCGCCGG	0.761													3	7					0	0	1	0	0
NEURL	9148	broad.mit.edu	37	10	105349891	105349891	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105349891G>A	uc001kxh.2	+	6	1897	c.1487G>A	c.(1486-1488)GGG>GAG	p.G496E	SH3PXD2A_uc010qqr.1_Intron	NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	496					nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		TTGTCCTCAGGGACAGCCCCC	0.632													40	149					0	0	1	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105361807	105361807	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105361807G>A	uc001kxj.1	-	14	3224	c.3084C>T	c.(3082-3084)TCC>TCT	p.S1028S	SH3PXD2A_uc010qqr.1_Intron|SH3PXD2A_uc010qqs.1_Silent_p.S863S|SH3PXD2A_uc010qqt.1_Silent_p.S905S|SH3PXD2A_uc009xxn.1_Silent_p.S863S|SH3PXD2A_uc010qqu.1_Silent_p.S971S	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	1056					cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		GGCGCACAGGGGACACGGGTA	0.627													52	129					0	0	1	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105386875	105386875	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105386875G>A	uc001kxj.1	-	9	829	c.689C>T	c.(688-690)TCC>TTC	p.S230F	SH3PXD2A_uc010qqr.1_Missense_Mutation_p.S92F|SH3PXD2A_uc010qqs.1_Missense_Mutation_p.S65F|SH3PXD2A_uc010qqt.1_Missense_Mutation_p.S107F|SH3PXD2A_uc009xxn.1_Missense_Mutation_p.S65F|SH3PXD2A_uc010qqu.1_Missense_Mutation_p.S145F	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	230					cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		GTTGATGTCGGAGTCATCCCG	0.607													28	83					0	0	1	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105484080	105484080	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105484080C>T	uc001kxj.1	-	5	486	c.346G>A	c.(346-348)GAA>AAA	p.E116K	SH3PXD2A_uc010qqu.1_Missense_Mutation_p.E46K	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	116	PX.				cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		CGGAAGACTTCGTCACACTGT	0.552													14	27					0	0	1	0	0
SLK	9748	broad.mit.edu	37	10	105763016	105763016	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105763016C>T	uc001kxo.1	+	9	2114	c.2080C>T	c.(2080-2082)CCT>TCT	p.P694S	SLK_uc001kxp.1_Missense_Mutation_p.P694S	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	694					apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TAAAAAAGAGCCTGAAGTTAC	0.368													30	95					0	0	1	0	0
COL17A1	1308	broad.mit.edu	37	10	105831820	105831820	+	Nonsense_Mutation	SNP	G	A	A	rs121912774		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105831820G>A	uc001kxr.2	-	8	602	c.433C>T	c.(433-435)CGA>TGA	p.R145*	COL17A1_uc010qqv.1_Nonsense_Mutation_p.R129*|COL17A1_uc009xxp.1_Nonsense_Mutation_p.R145*	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	145	Cytoplasmic (Potential).|Nonhelical region (NC16).|Necessary for interaction with DST and for the recruitment of DST to hemidesmosome.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CTCTGCAGTCGAACTCGAATT	0.453													23	36					0	0	1	0	0
COL17A1	1308	broad.mit.edu	37	10	105833949	105833949	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105833949C>T	uc001kxr.2	-	6	541	c.372G>A	c.(370-372)AAG>AAA	p.K124K	COL17A1_uc010qqv.1_Intron|COL17A1_uc009xxp.1_Silent_p.K124K	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	124	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TACCAAATTCCTTCCGAGGGT	0.488													52	117					0	0	1	0	0
COL17A1	1308	broad.mit.edu	37	10	105840406	105840406	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105840406C>T	uc001kxr.2	-	2	195	c.26G>A	c.(25-27)CGA>CAA	p.R9Q	COL17A1_uc010qqv.1_Missense_Mutation_p.R9Q|COL17A1_uc009xxp.1_Missense_Mutation_p.R9Q	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	9	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		AGTTCCATCTCGTTTGTTTTT	0.308													32	87					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105905303	105905303	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105905303T>C	uc001kxw.2	-	31	3991	c.3875A>G	c.(3874-3876)AAA>AGA	p.K1292R	C10orf79_uc009xxq.2_Missense_Mutation_p.K571R	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1292											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		AAATTCCTTTTTAAAGCTGCG	0.363													11	51					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105905313	105905313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105905313G>A	uc001kxw.2	-	31	3981	c.3865C>T	c.(3865-3867)CGC>TGC	p.R1289C	C10orf79_uc009xxq.2_Missense_Mutation_p.R568C	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1289											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TTAAAGCTGCGATCCATAACC	0.368													11	43					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105920842	105920842	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105920842C>T	uc001kxw.2	-	27	3609	c.3493G>A	c.(3493-3495)GAG>AAG	p.E1165K	C10orf79_uc009xxq.2_Missense_Mutation_p.E473K	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1165	Potential.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		ACTTTTTTCTCATAATCTTTG	0.333													12	33					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105923959	105923959	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105923959G>A	uc001kxw.2	-	24	3255	c.3139C>T	c.(3139-3141)CGA>TGA	p.R1047*	C10orf79_uc009xxq.2_Nonsense_Mutation_p.R355*	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1047											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TCTCGAATTCGAACATTTCTT	0.368													12	31					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105947179	105947179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105947179C>T	uc001kxw.2	-	14	1875	c.1759G>A	c.(1759-1761)GAG>AAG	p.E587K	C10orf79_uc009xxq.2_5'Flank|C10orf79_uc001kxx.3_Missense_Mutation_p.E588K	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	587											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		AGAGCGTGCTCCAACTCATAC	0.403													29	55					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105963467	105963467	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105963467G>A	uc001kxw.2	-	8	1174	c.1058C>T	c.(1057-1059)TCT>TTT	p.S353F	C10orf79_uc001kxx.3_Missense_Mutation_p.S354F|C10orf79_uc001kxy.1_Missense_Mutation_p.S354F|C10orf79_uc001kxz.2_Missense_Mutation_p.S354F	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	353	WD 5.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		ATAATTGGGAGAAAATGTCAT	0.313													29	57					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105965741	105965741	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105965741C>T	uc001kxw.2	-	7	1059	c.943G>A	c.(943-945)GGC>AGC	p.G315S	C10orf79_uc001kxx.3_Missense_Mutation_p.G316S|C10orf79_uc001kxy.1_Missense_Mutation_p.G316S|C10orf79_uc001kxz.2_Missense_Mutation_p.G316S	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	315	WD 4.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		GCCAGCACGCCCTCCTTCTGA	0.338													12	47					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105990440	105990440	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:105990440G>A	uc001kxw.2	-	2	343	c.227C>T	c.(226-228)CCC>CTC	p.P76L	C10orf79_uc001kxx.3_Missense_Mutation_p.P76L|C10orf79_uc001kxy.1_Missense_Mutation_p.P76L|C10orf79_uc001kxz.2_Missense_Mutation_p.P76L	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	76											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		AACTTCACAGGGGATGTTAGT	0.393													32	100					0	0	1	0	0
ITPRIP	85450	broad.mit.edu	37	10	106074292	106074292	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106074292G>A	uc001kye.2	-	2	1591	c.1518C>T	c.(1516-1518)TTC>TTT	p.F506F	ITPRIP_uc001kyf.2_Silent_p.F506F|ITPRIP_uc001kyg.2_Silent_p.F506F	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	506						plasma membrane					0						GCTGCAGGACGAAGGGCCGGA	0.587													24	89					0	0	1	0	0
ITPRIP	85450	broad.mit.edu	37	10	106074624	106074624	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106074624G>A	uc001kye.2	-	2	1259	c.1186C>T	c.(1186-1188)CTA>TTA	p.L396L	ITPRIP_uc001kyf.2_Silent_p.L396L|ITPRIP_uc001kyg.2_Silent_p.L396L	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	396						plasma membrane					0						AGTGCCTTTAGTGTCGTCCTG	0.642													16	63					0	0	1	0	0
ITPRIP	85450	broad.mit.edu	37	10	106074935	106074935	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106074935G>A	uc001kye.2	-	2	948	c.875C>T	c.(874-876)TCC>TTC	p.S292F	ITPRIP_uc001kyf.2_Missense_Mutation_p.S292F|ITPRIP_uc001kyg.2_Missense_Mutation_p.S292F	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	292						plasma membrane					0						CAGGTACAGGGAATCTGTGGC	0.597													17	48					0	0	1	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075049	106075049	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106075049C>T	uc001kye.2	-	2	834	c.761G>A	c.(760-762)AGC>AAC	p.S254N	ITPRIP_uc001kyf.2_Missense_Mutation_p.S254N|ITPRIP_uc001kyg.2_Missense_Mutation_p.S254N	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	254						plasma membrane					0						GCAGATGCAGCTCAATGTGTC	0.652													17	41					0	0	1	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075177	106075177	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106075177G>A	uc001kye.2	-	2	706	c.633C>T	c.(631-633)TTC>TTT	p.F211F	ITPRIP_uc001kyf.2_Silent_p.F211F|ITPRIP_uc001kyg.2_Silent_p.F211F	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	211						plasma membrane					0						TGAAGGGCACGAAAAGGTGGC	0.637													34	62					0	0	1	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075309	106075309	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106075309G>A	uc001kye.2	-	2	574	c.501C>T	c.(499-501)TTC>TTT	p.F167F	ITPRIP_uc001kyf.2_Silent_p.F167F|ITPRIP_uc001kyg.2_Silent_p.F167F	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	167						plasma membrane					0						AGTCATCCACGAAGCCTTCCA	0.622													32	76					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106118213	106118213	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106118213G>A	uc001kyh.2	+	2	258	c.124G>A	c.(124-126)GAA>AAA	p.E42K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	42										ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		ATTTCGGATTGAATATGAGAG	0.388													16	53					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106121808	106121808	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106121808G>A	uc001kyh.2	+	3	453	c.319G>A	c.(319-321)GAC>AAC	p.D107N		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	107	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		GAAGATGGTGGACTCAGCCTA	0.458													17	49					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106121904	106121904	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106121904G>A	uc001kyh.2	+	3	549	c.415G>A	c.(415-417)GGA>AGA	p.G139R		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	139	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		GCAGGGGTCTGGACTGTCAAT	0.488													15	26					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106124535	106124535	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106124535G>A	uc001kyh.2	+	4	619	c.485G>A	c.(484-486)AGA>AAA	p.R162K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	162	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		ACAAAGGAGAGAGACCAGCTC	0.458													22	60					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106124613	106124613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106124613G>A	uc001kyh.2	+	4	697	c.563G>A	c.(562-564)CGA>CAA	p.R188Q		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	188	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		GAAACAGAGCGATCAAAAGAG	0.473													25	47					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106124630	106124630	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106124630G>A	uc001kyh.2	+	4	714	c.580G>A	c.(580-582)GAA>AAA	p.E194K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	194	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		AGAGGAGGCTGAACATGCCAT	0.488													18	39					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106163486	106163486	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106163486G>A	uc001kyh.2	+	14	2174	c.2040_splice	c.e14-1	p.R680_splice		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147											ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		GTCTTATTCAGACAGGAGTTT	0.403													4	23					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106602608	106602608	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106602608C>T	uc001kyi.1	+	2	913	c.686C>T	c.(685-687)TCA>TTA	p.S229L		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	229	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ACTGAGAGTTCACTATGGAGG	0.502													15	57					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106675690	106675690	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106675690G>A	uc001kyi.1	+	3	1022	c.795G>A	c.(793-795)AAG>AAA	p.K265K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	265	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ACAAAAGGAAGGTAAGAGACT	0.453													20	63					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106865267	106865267	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106865267C>T	uc001kyi.1	+	7	1433	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	402	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AATATATCTTCATTCAGGTGA	0.502													35	128					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106899194	106899194	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106899194C>T	uc001kyi.1	+	8	1479	c.1252C>T	c.(1252-1254)CGA>TGA	p.R418*		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	418	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CGTGTCTTATCGAAGAGAGGC	0.502													48	106					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106907399	106907399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106907399G>A	uc001kyi.1	+	9	1554	c.1327G>A	c.(1327-1329)GAG>AAG	p.E443K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	443	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CAGTACAGACGAGAACCAAGT	0.473													30	79					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106917009	106917009	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106917009G>A	uc001kyi.1	+	10	1823	c.1596G>A	c.(1594-1596)GTG>GTA	p.V532V		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	532	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CTCCGGATGTGGACCTGAGAG	0.562													5	57					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106917017	106917017	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106917017G>A	uc001kyi.1	+	10	1831	c.1604G>A	c.(1603-1605)AGA>AAA	p.R535K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	535	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GTGGACCTGAGAGGAAGCCCA	0.557													8	43					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106917020	106917020	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106917020G>A	uc001kyi.1	+	10	1834	c.1607G>A	c.(1606-1608)GGA>GAA	p.G536E		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	536	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GACCTGAGAGGAAGCCCAGTG	0.567													8	43					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106918652	106918652	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106918652C>T	uc001kyi.1	+	11	1859	c.1632C>T	c.(1630-1632)CCC>CCT	p.P544P		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	544	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CATTTTAGCCCTTCTGTTCCT	0.478													21	72					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106918708	106918708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106918708G>A	uc001kyi.1	+	11	1915	c.1688G>A	c.(1687-1689)AGA>AAA	p.R563K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	563	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TCCTCAGGAAGAATCTCTAGC	0.418													36	65					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106924104	106924104	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106924104C>T	uc001kyi.1	+	12	2003	c.1776C>T	c.(1774-1776)TTC>TTT	p.F592F		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	592	BNR 5.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TTGGTGTGTTCATCTCCTCCG	0.438													24	49					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106960963	106960963	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106960963G>A	uc001kyi.1	+	16	2440	c.2213G>A	c.(2212-2214)GGA>GAA	p.G738E	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	738	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GACCACTCAGGATCAGTGGTC	0.493													22	103					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106970943	106970943	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106970943C>T	uc001kyi.1	+	17	2537	c.2310C>T	c.(2308-2310)TTC>TTT	p.F770F	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	770	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TCCCAGCTTTCTGGTACAATC	0.448													23	47					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106976817	106976817	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:106976817G>A	uc001kyi.1	+	19	2898	c.2671G>A	c.(2671-2673)GTG>ATG	p.V891M	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	891	PKD.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GATCTTCCAGGTGACAGCCTA	0.532													27	54					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	107012559	107012559	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:107012559C>T	uc001kyi.1	+	23	3359	c.3132C>T	c.(3130-3132)ATC>ATT	p.I1044I	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1044	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGGACCAGATCCTCATTGCCG	0.527													46	98					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	107022146	107022146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:107022146G>A	uc001kyi.1	+	26	3728	c.3501G>A	c.(3499-3501)ATG>ATA	p.M1167I		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1167	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGCAGGAGATGATTGGGTCAG	0.498													27	59					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	107022182	107022182	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:107022182A>T	uc001kyi.1	+	26	3764	c.3537A>T	c.(3535-3537)AAA>AAT	p.K1179N		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1179	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ACGCCCCCAAAATCACACTCA	0.507													21	52					0	0	1	0	0
SORCS1	114815	broad.mit.edu	37	10	108377998	108377998	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:108377998G>A	uc001kym.2	-	21	2837	c.2829C>T	c.(2827-2829)TTC>TTT	p.F943F	SORCS1_uc001kyl.2_Silent_p.F943F|SORCS1_uc009xxs.2_Silent_p.F943F|SORCS1_uc001kyn.1_Silent_p.F943F|SORCS1_uc001kyo.2_Silent_p.F943F	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	943	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		AAGTAAATCTGAAGGATATGC	0.458													18	64					0	0	1	0	0
SORCS1	114815	broad.mit.edu	37	10	108389018	108389018	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:108389018G>A	uc001kym.2	-	19	2612	c.2604C>T	c.(2602-2604)ACC>ACT	p.T868T	SORCS1_uc001kyl.2_Silent_p.T868T|SORCS1_uc009xxs.2_Silent_p.T868T|SORCS1_uc001kyn.1_Silent_p.T868T|SORCS1_uc001kyo.2_Silent_p.T868T	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	868	Lumenal (Potential).|PKD.					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		CCACCTGCACGGTCACACGGA	0.458													22	28					0	0	1	0	0
ADD3	120	broad.mit.edu	37	10	111872536	111872536	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:111872536C>T	uc001kyt.3	+	4	511	c.197C>T	c.(196-198)GCC>GTC	p.A66V	ADD3_uc001kys.3_Missense_Mutation_p.A66V|ADD3_uc001kyu.2_Missense_Mutation_p.A66V|ADD3_uc001kyv.2_Missense_Mutation_p.A66V|ADD3_uc001kyw.2_Missense_Mutation_p.A66V	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	66						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		GTATTACAGGCCTTTCGGGAA	0.403													33	92					0	0	1	0	0
ADRA2A	150	broad.mit.edu	37	10	112838180	112838180	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:112838180C>A	uc001kzo.2	+	1	1391	c.426C>A	c.(424-426)ATC>ATA	p.I142I		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	127	Helical; Name=3; (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	TGTGCGCCATCAGCCTGGACC	0.602													11	37					1.61879e-10	1.62443e-10	1	1	0
ADRA2A	150	broad.mit.edu	37	10	112838960	112838960	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:112838960G>A	uc001kzo.2	+	1	2171	c.1206G>A	c.(1204-1206)TGG>TGA	p.W402*		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	387	Helical; Name=6; (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	TGGTGTGCTGGTTCCCCTTCT	0.632													27	75					0	0	1	0	0
ADRA2A	150	broad.mit.edu	37	10	112838991	112838991	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:112838991G>A	uc001kzo.2	+	1	2202	c.1237G>A	c.(1237-1239)GCC>ACC	p.A413T		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	398	Extracellular (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	CACGCTCACGGCCGTCGGGTG	0.582													40	108					0	0	1	0	0
GPAM	57678	broad.mit.edu	37	10	113920566	113920566	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:113920566G>A	uc009xxy.1	-	16	1753	c.1555C>T	c.(1555-1557)CGT>TGT	p.R519C	GPAM_uc001kzp.2_Missense_Mutation_p.R519C|GPAM_uc001kzq.1_Missense_Mutation_p.R519C	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	519	Mitochondrial intermembrane (Potential).|Cytoplasmic (Potential).				phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		TCAAAATCACGAGCCAGGACT	0.443													8	37					0	0	1	0	0
GPAM	57678	broad.mit.edu	37	10	113924290	113924290	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:113924290G>A	uc009xxy.1	-	13	1498	c.1300C>T	c.(1300-1302)CCT>TCT	p.P434S	GPAM_uc001kzp.2_Missense_Mutation_p.P434S|GPAM_uc001kzq.1_Missense_Mutation_p.P434S	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	434					phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		TACCTTGAAGGAAGTATAGCT	0.358													14	46					0	0	1	0	0
GPAM	57678	broad.mit.edu	37	10	113935433	113935433	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:113935433A>T	uc009xxy.1	-	6	536	c.338T>A	c.(337-339)CTT>CAT	p.L113H	GPAM_uc001kzp.2_Missense_Mutation_p.L113H|GPAM_uc001kzq.1_Missense_Mutation_p.L113H	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	113					phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		TTGAATAAAAAGAACGTAAGA	0.443													40	89					0	0	1	0	0
TECTB	6975	broad.mit.edu	37	10	114053792	114053792	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:114053792C>T	uc001kzr.1	+	6	644	c.644C>T	c.(643-645)CCC>CTC	p.P215L		NM_058222	NP_478129	Q96PL2	TECTB_HUMAN	tectorin beta precursor	215	ZP.					anchored to membrane|plasma membrane|proteinaceous extracellular matrix					0		Colorectal(252;0.198)		Epithelial(162;0.0143)|all cancers(201;0.0242)		TTCATGTATCCCTTGCAGTGG	0.478													11	40					0	0	1	0	0
TECTB	6975	broad.mit.edu	37	10	114061871	114061871	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:114061871C>T	uc001kzr.1	+	9	920	c.920C>T	c.(919-921)TCC>TTC	p.S307F		NM_058222	NP_478129	Q96PL2	TECTB_HUMAN	tectorin beta precursor	307						anchored to membrane|plasma membrane|proteinaceous extracellular matrix					0		Colorectal(252;0.198)		Epithelial(162;0.0143)|all cancers(201;0.0242)		AGGGGATTTTCCAGTCTCTAT	0.403													49	112					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114154743	114154743	+	Silent	SNP	G	A	A	rs138653304	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:114154743G>A	uc001kzs.2	+	2	180	c.39G>A	c.(37-39)CCG>CCA	p.P13P	ACSL5_uc001kzt.2_Silent_p.P13P|ACSL5_uc001kzu.2_Silent_p.P69P|ACSL5_uc009xxz.2_Silent_p.P13P	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	13	Helical; Signal-anchor for type III membrane protein; (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		CCCCACTTCCGACCCCGGCGT	0.428													64	143					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114154814	114154814	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:114154814C>T	uc001kzs.2	+	2	251	c.110C>T	c.(109-111)CCC>CTC	p.P37L	ACSL5_uc001kzt.2_Missense_Mutation_p.P37L|ACSL5_uc001kzu.2_Missense_Mutation_p.P93L|ACSL5_uc009xxz.2_Missense_Mutation_p.P37L	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	37	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		AGACCTCAACCCGTCTTACCT	0.448													31	91					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114181785	114181785	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:114181785G>A	uc001kzs.2	+	16	1609	c.1468G>A	c.(1468-1470)GAA>AAA	p.E490K	ACSL5_uc001kzt.2_Missense_Mutation_p.E490K|ACSL5_uc001kzu.2_Missense_Mutation_p.E546K|ACSL5_uc009xxz.2_Missense_Mutation_p.E490K|ACSL5_uc010qrj.1_Missense_Mutation_p.E272K	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	490	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		AGTGAATAATGAAGGAGAGGT	0.473													28	59					0	0	1	0	0
TCF7L2	6934	broad.mit.edu	37	10	114903687	114903687	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:114903687C>T	uc001lae.3	+	7	1198	c.691C>T	c.(691-693)CCA>TCA	p.P231S	TCF7L2_uc001lac.3_Missense_Mutation_p.P208S|TCF7L2_uc010qrk.1_Missense_Mutation_p.P208S|TCF7L2_uc010qrl.1_Missense_Mutation_p.P208S|TCF7L2_uc010qrm.1_Missense_Mutation_p.P231S|TCF7L2_uc010qrn.1_Missense_Mutation_p.P174S|TCF7L2_uc001lad.3_Missense_Mutation_p.P208S|TCF7L2_uc001lag.3_Missense_Mutation_p.P255S|TCF7L2_uc001laf.3_Missense_Mutation_p.P208S|TCF7L2_uc010qro.1_Missense_Mutation_p.P208S|TCF7L2_uc001lah.2_Missense_Mutation_p.P208S|TCF7L2_uc010qrp.1_Missense_Mutation_p.P208S|TCF7L2_uc010qrq.1_Missense_Mutation_p.P208S|TCF7L2_uc010qrr.1_Missense_Mutation_p.P150S|TCF7L2_uc010qrs.1_Missense_Mutation_p.P102S|TCF7L2_uc010qrt.1_Missense_Mutation_p.P102S|TCF7L2_uc010qru.1_Missense_Mutation_p.P125S|TCF7L2_uc010qrv.1_Missense_Mutation_p.P48S|TCF7L2_uc010qrw.1_5'UTR|TCF7L2_uc010qrx.1_Missense_Mutation_p.P88S	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	231	Mediates interaction with MAD2L2.|Pro-rich.				anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		CTCAGGAATCCCACGGCCTCC	0.527													13	41					0	0	1	0	0
HABP2	3026	broad.mit.edu	37	10	115335717	115335717	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115335717C>T	uc001lai.3	+	4	388	c.285C>T	c.(283-285)TTC>TTT	p.F95F	HABP2_uc010qrz.1_RNA|HABP2_uc010qry.1_Missense_Mutation_p.S84L	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	95	EGF-like 1.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		GGAGCACCTTCACATGCAGCT	0.527													39	145					0	0	1	0	0
HABP2	3026	broad.mit.edu	37	10	115341664	115341664	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115341664G>A	uc001lai.3	+	9	971	c.868G>A	c.(868-870)GAG>AAG	p.E290K	HABP2_uc010qrz.1_Intron	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	290					cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		AAGCCCCACTGAGCCATCAAC	0.527													58	162					0	0	1	0	0
HABP2	3026	broad.mit.edu	37	10	115341719	115341719	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115341719A>T	uc001lai.3	+	9	1026	c.923A>T	c.(922-924)GAG>GTG	p.E308V	HABP2_uc010qrz.1_Intron	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	308					cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		GAGATAGCAGAGAGGAAGATC	0.557													46	124					0	0	1	0	0
HABP2	3026	broad.mit.edu	37	10	115341723	115341723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115341723G>A	uc001lai.3	+	9	1030	c.927G>A	c.(925-927)AGG>AGA	p.R309R	HABP2_uc010qrz.1_Intron	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	309					cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		TAGCAGAGAGGAAGATCAAGA	0.572													45	122					0	0	1	0	0
HABP2	3026	broad.mit.edu	37	10	115341822	115341822	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115341822C>T	uc001lai.3	+	9	1129	c.1026C>T	c.(1024-1026)CCC>CCT	p.P342P	HABP2_uc010qrz.1_Intron	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	342	Peptidase S1.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		TCTCCATGCCCCAGGGCCACT	0.642													14	32					0	0	1	0	0
NRAP	4892	broad.mit.edu	37	10	115349528	115349528	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115349528G>A	uc001laj.2	-	41	5149	c.4985C>T	c.(4984-4986)ACC>ATC	p.T1662I	NRAP_uc009xyb.2_Missense_Mutation_p.T415I|NRAP_uc001lak.2_Missense_Mutation_p.T1627I|NRAP_uc001lal.3_Missense_Mutation_p.T1662I	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1662	Nebulin 44.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		AACACCTCTGGTCAGGTTCAA	0.542													28	94					0	0	1	0	0
NRAP	4892	broad.mit.edu	37	10	115350393	115350393	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115350393C>T	uc001laj.2	-	40	5064	c.4900G>A	c.(4900-4902)GAC>AAC	p.D1634N	NRAP_uc009xyb.2_Missense_Mutation_p.D387N|NRAP_uc001lak.2_Missense_Mutation_p.D1599N|NRAP_uc001lal.3_Missense_Mutation_p.D1634N	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1634						fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TGCTCCGGGTCGCAGGTGGGC	0.667													15	52					0	0	1	0	0
NRAP	4892	broad.mit.edu	37	10	115371995	115371995	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115371995C>T	uc001laj.2	-	30	3660	c.3496G>A	c.(3496-3498)GAG>AAG	p.E1166K	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Missense_Mutation_p.E1131K|NRAP_uc001lal.3_Missense_Mutation_p.E1166K	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1166	Nebulin 30.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CTCCTTACCTCACTCTGCAAT	0.542													25	61					0	0	1	0	0
NRAP	4892	broad.mit.edu	37	10	115375563	115375563	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115375563C>T	uc001laj.2	-	27	3150	c.2986G>A	c.(2986-2988)GAA>AAA	p.E996K	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Missense_Mutation_p.E961K|NRAP_uc001lal.3_Missense_Mutation_p.E996K	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	996	Nebulin 25.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TCTCCTTGTTCCCTGTATAAT	0.493													8	18					0	0	1	0	0
NRAP	4892	broad.mit.edu	37	10	115391684	115391684	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115391684C>A	uc001laj.2	-	17	1836	c.1672G>T	c.(1672-1674)GGA>TGA	p.G558*	NRAP_uc009xyb.2_5'Flank|NRAP_uc001lak.2_Nonsense_Mutation_p.G523*|NRAP_uc001lal.3_Nonsense_Mutation_p.G558*	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	558	Nebulin 13.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		ATCTCAAATCCTTTCCCCTTT	0.463													47	147					2.01807e-28	2.03023e-28	1	1	0
NRAP	4892	broad.mit.edu	37	10	115406706	115406706	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115406706C>T	uc001laj.2	-	10	1133	c.969G>A	c.(967-969)AAG>AAA	p.K323K	NRAP_uc001lak.2_Silent_p.K323K|NRAP_uc001lal.3_Silent_p.K323K	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	323	Nebulin 7.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CGTGAGCTTTCTTGGCGTTCT	0.522													34	86					0	0	1	0	0
NRAP	4892	broad.mit.edu	37	10	115409800	115409800	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115409800C>T	uc001laj.2	-	9	1048	c.884G>A	c.(883-885)GGC>GAC	p.G295D	NRAP_uc001lak.2_Missense_Mutation_p.G295D|NRAP_uc001lal.3_Missense_Mutation_p.G295D	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	295						fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		ACATACCTGGCCATATTGGTC	0.408													33	184					0	0	1	0	0
NRAP	4892	broad.mit.edu	37	10	115412772	115412772	+	Silent	SNP	G	A	A	rs149492667		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115412772G>A	uc001laj.2	-	6	656	c.492C>T	c.(490-492)CCC>CCT	p.P164P	NRAP_uc001lak.2_Silent_p.P164P|NRAP_uc001lal.3_Silent_p.P164P	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	164	Nebulin 2.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CCTTGCCCCTGGGTTGCTCAT	0.473													35	96					0	0	1	0	0
C10orf81	79949	broad.mit.edu	37	10	115526413	115526413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115526413G>A	uc001lat.1	+	3	704	c.142G>A	c.(142-144)GAA>AAA	p.E48K	C10orf81_uc001lar.1_Missense_Mutation_p.E54K|C10orf81_uc009xyc.1_5'UTR|C10orf81_uc001las.1_Intron	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	48	PH.							p.I48I(1)		central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		AAAGGCTGGGGAAAAGAGCTT	0.338													42	80					0	0	1	0	0
C10orf81	79949	broad.mit.edu	37	10	115526432	115526432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115526432C>T	uc001lat.1	+	3	723	c.161C>T	c.(160-162)TCC>TTC	p.S54F	C10orf81_uc001lar.1_Missense_Mutation_p.S60F|C10orf81_uc009xyc.1_5'UTR|C10orf81_uc001las.1_Intron	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	54	PH.									central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		TTTAGTCTTTCCTATTATAAA	0.338													32	86					0	0	1	0	0
C10orf81	79949	broad.mit.edu	37	10	115529650	115529650	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115529650C>T	uc001lat.1	+	6	1087	c.525C>T	c.(523-525)CTC>CTT	p.L175L	C10orf81_uc001lar.1_Silent_p.L181L|C10orf81_uc009xyc.1_Silent_p.L93L|C10orf81_uc001las.1_Silent_p.L93L|C10orf81_uc001lau.1_5'Flank	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	175										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		GAAATGGTCTCCAAGACAAGG	0.473													42	101					0	0	1	0	0
DCLRE1A	9937	broad.mit.edu	37	10	115607039	115607039	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115607039G>A	uc001law.2	-	3	3099	c.2181C>T	c.(2179-2181)GCC>GCT	p.A727A		NM_014881	NP_055696	Q6PJP8	DCR1A_HUMAN	DNA cross-link repair 1A	727					cell division|mitosis	nucleus	hydrolase activity			skin(2)	2				Epithelial(162;0.0157)|all cancers(201;0.0171)		TGAGAAAATAGGCTGTGCAAC	0.383								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					17	42					0	0	1	0	0
ADRB1	153	broad.mit.edu	37	10	115804214	115804214	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115804214G>A	uc001lba.2	+	1	409	c.323G>A	c.(322-324)GGG>GAG	p.G108E		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	108	Helical; Name=2; (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	CTGGTCATGGGGCTGCTGGTG	0.657													38	75					0	0	1	0	0
ADRB1	153	broad.mit.edu	37	10	115804545	115804545	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115804545C>T	uc001lba.2	+	1	740	c.654C>T	c.(652-654)TTC>TTT	p.F218F		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	218	Extracellular (By similarity).|Agonist and antagonist binding (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	GCTGCGACTTCGTCACCAACC	0.662													11	48					0	0	1	0	0
ADRB1	153	broad.mit.edu	37	10	115804617	115804617	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115804617C>T	uc001lba.2	+	1	812	c.726C>T	c.(724-726)TTC>TTT	p.F242F		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	242	Helical; Name=5; (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	TCATGGCCTTCGTGTACCTGC	0.602													5	51					0	0	1	0	0
C10orf118	55088	broad.mit.edu	37	10	115889665	115889665	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115889665G>A	uc001lbb.1	-	13	2819	c.2167C>T	c.(2167-2169)CGT>TGT	p.R723C	C10orf118_uc009xyd.1_Missense_Mutation_p.R321C|C10orf118_uc001lbc.1_Missense_Mutation_p.R723C|C10orf118_uc009xye.1_RNA	NM_018017	NP_060487	Q7Z3E2	CJ118_HUMAN	CTCL tumor antigen L14-2	723	Ser-rich.									ovary(2)	2		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0161)|all cancers(201;0.0397)		GAACTAGAACGACTTCCCATG	0.294													38	92					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115947732	115947732	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115947732C>T	uc001lbg.1	+	2	295	c.142C>T	c.(142-144)CCT>TCT	p.P48S	TDRD1_uc001lbf.2_Missense_Mutation_p.P39S|TDRD1_uc001lbh.1_Missense_Mutation_p.P39S|TDRD1_uc001lbi.1_Missense_Mutation_p.P39S	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	48					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		TGGAACACTTCCTAACCACCC	0.373													34	114					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115947782	115947782	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115947782G>A	uc001lbg.1	+	2	345	c.192G>A	c.(190-192)AAG>AAA	p.K64K	TDRD1_uc001lbf.2_Silent_p.K55K|TDRD1_uc001lbh.1_Silent_p.K55K|TDRD1_uc001lbi.1_Silent_p.K55K	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	64					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		GAAATAAAAAGAACAATTTTT	0.388													44	116					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115963932	115963932	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115963932G>A	uc001lbg.1	+	9	1235	c.1082G>A	c.(1081-1083)AGA>AAA	p.R361K	TDRD1_uc001lbf.2_Missense_Mutation_p.R352K|TDRD1_uc001lbh.1_Missense_Mutation_p.R352K|TDRD1_uc001lbi.1_Missense_Mutation_p.R352K|TDRD1_uc010qsc.1_Intron|TDRD1_uc001lbj.2_Missense_Mutation_p.R70K	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	361	Tudor 1.				DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		CCATTAAACAGAATTTACCAC	0.353													18	62					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115964637	115964637	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115964637G>A	uc001lbg.1	+	10	1435	c.1282G>A	c.(1282-1284)GAG>AAG	p.E428K	TDRD1_uc001lbf.2_Missense_Mutation_p.E419K|TDRD1_uc001lbh.1_Missense_Mutation_p.E419K|TDRD1_uc001lbi.1_Missense_Mutation_p.E419K|TDRD1_uc010qsc.1_Missense_Mutation_p.E89K|TDRD1_uc001lbj.2_Missense_Mutation_p.E137K	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	428					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		TGTAGAAGTTGAGCTGCCAAA	0.383													28	72					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115973129	115973129	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115973129G>A	uc001lbg.1	+	15	2009	c.1856G>A	c.(1855-1857)TGG>TAG	p.W619*	TDRD1_uc001lbf.2_Nonsense_Mutation_p.W553*|TDRD1_uc001lbh.1_Nonsense_Mutation_p.W610*|TDRD1_uc001lbi.1_Nonsense_Mutation_p.W610*|TDRD1_uc010qsc.1_Nonsense_Mutation_p.W223*|TDRD1_uc001lbj.2_Nonsense_Mutation_p.W328*	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	619					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		TTAGGAATTTGGACTCCAGAA	0.358													19	93					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115986838	115986838	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:115986838G>A	uc001lbg.1	+	23	3336	c.3183G>A	c.(3181-3183)ATG>ATA	p.M1061I	TDRD1_uc001lbf.2_Missense_Mutation_p.M938I|TDRD1_uc001lbh.1_Missense_Mutation_p.M1048I|TDRD1_uc001lbi.1_Missense_Mutation_p.M1052I|TDRD1_uc010qsc.1_Intron|TDRD1_uc001lbj.2_Missense_Mutation_p.M770I	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	1061					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		CAGGATTAATGGAATTGAATG	0.264													5	16					0	0	1	0	0
VWA2	340706	broad.mit.edu	37	10	116037711	116037711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116037711G>A	uc001lbl.1	+	7	926	c.605G>A	c.(604-606)GGG>GAG	p.G202E	VWA2_uc001lbk.1_Missense_Mutation_p.G202E|VWA2_uc009xyf.1_5'UTR	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	202	VWFA 1.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GAGCCTAGAGGGCAGCACGTG	0.632													11	20					0	0	1	0	0
VWA2	340706	broad.mit.edu	37	10	116037787	116037787	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116037787C>T	uc001lbl.1	+	7	1002	c.681C>T	c.(679-681)ATC>ATT	p.I227I	VWA2_uc001lbk.1_Silent_p.I227I|VWA2_uc009xyf.1_5'UTR	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	227						extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GCTCGGCCATCTGCTCCAGCG	0.647													4	35					0	0	1	0	0
VWA2	340706	broad.mit.edu	37	10	116045904	116045904	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116045904G>A	uc001lbl.1	+	11	1525	c.1204G>A	c.(1204-1206)GAT>AAT	p.D402N	VWA2_uc001lbk.1_Missense_Mutation_p.D402N|VWA2_uc009xyf.1_Missense_Mutation_p.D98N	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	402	VWFA 2.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GGAGTACCAGGATGTGCCTGA	0.682													19	69					0	0	1	0	0
VWA2	340706	broad.mit.edu	37	10	116046221	116046221	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116046221C>T	uc001lbl.1	+	11	1842	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F	VWA2_uc001lbk.1_Silent_p.F507F|VWA2_uc009xyf.1_Silent_p.F203F	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	507	VWFA 2.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		AGGATCTGTTCAACCAAATCC	0.627													13	49					0	0	1	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116064542	116064542	+	Missense_Mutation	SNP	G	A	A	rs148589522		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116064542G>A	uc001lbn.2	-	11	1521	c.1220C>T	c.(1219-1221)CCC>CTC	p.P407L	AFAP1L2_uc001lbo.2_Missense_Mutation_p.P407L|AFAP1L2_uc010qse.1_Missense_Mutation_p.P460L|AFAP1L2_uc001lbp.2_Missense_Mutation_p.P435L|AFAP1L2_uc001lbr.1_Missense_Mutation_p.P407L|AFAP1L2_uc010qsd.1_5'UTR|AFAP1L2_uc001lbq.1_5'Flank	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	407	PH 2.				inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		GTCGGGGCTGGGGTCTGGGAC	0.667													7	62					0	0	1	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116067573	116067573	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116067573C>T	uc001lbn.2	-	10	1364	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	AFAP1L2_uc001lbo.2_Missense_Mutation_p.E355K|AFAP1L2_uc010qse.1_Missense_Mutation_p.E408K|AFAP1L2_uc001lbp.2_Missense_Mutation_p.E383K|AFAP1L2_uc001lbr.1_Missense_Mutation_p.E355K|AFAP1L2_uc010qsd.1_5'Flank	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	355	PH 2.				inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		CTGGATGTCTCGAGGGACCTC	0.413													15	54					0	0	1	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116073723	116073723	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116073723C>T	uc001lbn.2	-	7	1000	c.699G>A	c.(697-699)CGG>CGA	p.R233R	AFAP1L2_uc001lbo.2_Silent_p.R233R|AFAP1L2_uc010qse.1_Silent_p.R286R|AFAP1L2_uc001lbp.2_Silent_p.R261R|AFAP1L2_uc001lbr.1_Silent_p.R233R	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	233	PH 1.				inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		GCTCCTTCTTCCGCACTTGCT	0.567													13	60					0	0	1	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116073768	116073768	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116073768C>T	uc001lbn.2	-	7	955	c.654G>A	c.(652-654)GTG>GTA	p.V218V	AFAP1L2_uc001lbo.2_Silent_p.V218V|AFAP1L2_uc010qse.1_Silent_p.V271V|AFAP1L2_uc001lbp.2_Silent_p.V246V|AFAP1L2_uc001lbr.1_Silent_p.V218V	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	218	PH 1.				inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		CCAGTAGGTTCACGTCCAGCT	0.552													18	57					0	0	1	0	0
ABLIM1	3983	broad.mit.edu	37	10	116198974	116198974	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116198974C>T	uc010qsg.1	-	20	2202	c.2103G>A	c.(2101-2103)ATG>ATA	p.M701I	ABLIM1_uc010qsh.1_Missense_Mutation_p.M669I|ABLIM1_uc010qsi.1_Missense_Mutation_p.M641I|ABLIM1_uc010qsf.1_Missense_Mutation_p.M378I	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	701					axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		CTCCTCGGTCCATTCTCATTG	0.473													18	55					0	0	1	0	0
ABLIM1	3983	broad.mit.edu	37	10	116205144	116205144	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116205144C>T	uc010qsg.1	-	16	1853	c.1754G>A	c.(1753-1755)AGA>AAA	p.R585K	ABLIM1_uc010qsh.1_Missense_Mutation_p.R553K|ABLIM1_uc010qsi.1_Missense_Mutation_p.R525K|ABLIM1_uc010qsk.1_Missense_Mutation_p.R462K|ABLIM1_uc009xyp.2_Missense_Mutation_p.R549K|ABLIM1_uc010qsf.1_Missense_Mutation_p.R262K|ABLIM1_uc009xyn.2_Missense_Mutation_p.R201K|ABLIM1_uc010qsj.1_Missense_Mutation_p.R180K|ABLIM1_uc009xyo.2_Missense_Mutation_p.R398K	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	585					axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		GCCACTAGATCTGCGTTTCAT	0.458													61	135					0	0	1	0	0
ABLIM1	3983	broad.mit.edu	37	10	116335236	116335236	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116335236C>T	uc010qsg.1	-	3	601	c.502G>A	c.(502-504)GAA>AAA	p.E168K	ABLIM1_uc010qsh.1_Missense_Mutation_p.E108K|ABLIM1_uc010qsi.1_Missense_Mutation_p.E108K|ABLIM1_uc010qsk.1_Missense_Mutation_p.E92K|ABLIM1_uc009xyp.2_Missense_Mutation_p.E102K|ABLIM1_uc009xyo.2_Missense_Mutation_p.E16K	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	168	LIM zinc-binding 2.				axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		GTCACCACTTCGCCCTCCACG	0.537													27	82					0	0	1	0	0
FAM160B1	57700	broad.mit.edu	37	10	116605158	116605158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116605158C>T	uc001lcb.2	+	8	1381	c.1046C>T	c.(1045-1047)TCA>TTA	p.S349L	FAM160B1_uc001lcc.2_Missense_Mutation_p.S349L	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	349										lung(1)	1						GAAGATGCTTCAGCATTTCCA	0.358													28	68					0	0	1	0	0
FAM160B1	57700	broad.mit.edu	37	10	116605816	116605816	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116605816C>T	uc001lcb.2	+	9	1508	c.1173C>T	c.(1171-1173)TTC>TTT	p.F391F	FAM160B1_uc001lcc.2_Silent_p.F391F	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	391										lung(1)	1						AAAGATTTTTCATTGGTGTTA	0.338													51	213					0	0	1	0	0
FAM160B1	57700	broad.mit.edu	37	10	116605974	116605974	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116605974C>T	uc001lcb.2	+	10	1581	c.1246C>T	c.(1246-1248)CGC>TGC	p.R416C	FAM160B1_uc001lcc.2_Missense_Mutation_p.R416C	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	416										lung(1)	1						TCTGCTTCATCGCATCGTTCG	0.448													89	206					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	116889168	116889168	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116889168G>A	uc001lcg.2	+	5	1086	c.700G>A	c.(700-702)GAA>AAA	p.E234K	ATRNL1_uc001lce.2_RNA|ATRNL1_uc001lcf.2_Missense_Mutation_p.E234K|ATRNL1_uc009xyq.2_Missense_Mutation_p.E234K	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	234	EGF-like 2.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		AGTATATTGTGAATGTGATAA	0.383													13	93					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	116975543	116975543	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:116975543G>A	uc001lcg.2	+	9	1823	c.1437G>A	c.(1435-1437)AAG>AAA	p.K479K		NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	479	Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		AAATAACAAAGTCCATTTATG	0.363													25	62					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117221501	117221501	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:117221501G>A	uc001lcg.2	+	22	3759	c.3373G>A	c.(3373-3375)GAT>AAT	p.D1125N	ATRNL1_uc010qsm.1_Missense_Mutation_p.D254N|ATRNL1_uc010qsn.1_Intron	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1125	Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		ACAGGAAGATGATCGCCACCA	0.323													11	72					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117221518	117221518	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:117221518C>T	uc001lcg.2	+	22	3776	c.3390C>T	c.(3388-3390)GCC>GCT	p.A1130A	ATRNL1_uc010qsm.1_Silent_p.A259A|ATRNL1_uc010qsn.1_Intron	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1130	Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		ACCATACTGCCATAAACTTTA	0.308													7	71					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117278829	117278829	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:117278829C>T	uc001lcg.2	+	25	4097	c.3711C>T	c.(3709-3711)TTC>TTT	p.F1237F	ATRNL1_uc010qsm.1_Silent_p.F366F|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1237	Helical; (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TTGTCACCTTCTTCAGGTAAA	0.323													9	36					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117308979	117308979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:117308979C>T	uc001lcg.2	+	26	4114	c.3728C>T	c.(3727-3729)TCC>TTC	p.S1243F	ATRNL1_uc010qsm.1_Missense_Mutation_p.S372F|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1243	Helical; (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TGTTTCCTATCCTTATTGCTG	0.313													25	69					0	0	1	0	0
GFRA1	2674	broad.mit.edu	37	10	117884974	117884974	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:117884974G>A	uc001lcj.2	-	6	1226	c.528C>T	c.(526-528)ACC>ACT	p.T176T	GFRA1_uc001lci.2_Silent_p.T171T|GFRA1_uc009xyr.2_Silent_p.T171T	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	176	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		TGGTGCACGGGGTGATGTACG	0.587													4	40					0	0	1	0	0
GFRA1	2674	broad.mit.edu	37	10	117885049	117885050	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:117885049_117885050CC>TT	uc001lcj.2	-	6	1150_1151	c.452_453GG>AA	c.(451-453)GGG>GAA	p.G151E	GFRA1_uc001lci.2_Missense_Mutation_p.G146E|GFRA1_uc009xyr.2_Missense_Mutation_p.G146E	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	151	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		GGCAGTTGTTCCCTTTGGGAAT	0.54													6	14					0	0	1	0	0
C10orf96	374355	broad.mit.edu	37	10	118084563	118084563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118084563G>A	uc001lck.2	+	2	291	c.40G>A	c.(40-42)GAG>AAG	p.E14K		NM_198515	NP_940917	P0C7W6	CJ096_HUMAN	hypothetical protein LOC374355	14	Potential.									ovary(2)	2		Lung NSC(174;0.204)|all_lung(145;0.248)		all cancers(201;0.014)		CATCTTCACCGAGCATCAGGC	0.522													21	70					0	0	1	0	0
PNLIPRP3	119548	broad.mit.edu	37	10	118196347	118196347	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118196347C>T	uc001lcl.3	+	2	275	c.174C>T	c.(172-174)CTC>CTT	p.L58L		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	58					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		GTTTCCTGCTCTACACTATAC	0.408													17	159					0	0	1	0	0
PNLIPRP3	119548	broad.mit.edu	37	10	118203949	118203949	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118203949C>T	uc001lcl.3	+	4	481	c.380C>T	c.(379-381)TCA>TTA	p.S127L		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	127					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		ATCAACGGTTCACGGGAATAC	0.333													43	69					0	0	1	0	0
PNLIP	5406	broad.mit.edu	37	10	118306879	118306879	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118306879C>T	uc001lcm.2	+	3	163	c.120C>T	c.(118-120)CCC>CCT	p.P40P		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	40					lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	CGGAAAGACCCCTCCATATAT	0.438													22	107					0	0	1	0	0
PNLIP	5406	broad.mit.edu	37	10	118307871	118307871	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118307871G>A	uc001lcm.2	+	4	245	c.202_splice	c.e4-1	p.E68_splice		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor						lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	TGTCTAAACAGGAAGTTGCCG	0.388													43	112					0	0	1	0	0
PNLIP	5406	broad.mit.edu	37	10	118310689	118310689	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118310689C>T	uc001lcm.2	+	5	447	c.404C>T	c.(403-405)TCG>TTG	p.S135L		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	135					lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	ACACAAGCCTCGCAGAACATC	0.463													7	30					0	0	1	0	0
PNLIP	5406	broad.mit.edu	37	10	118314941	118314941	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118314941C>T	uc001lcm.2	+	8	776	c.733C>T	c.(733-735)CCA>TCA	p.P245S		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	245					lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	AGATTTCTTTCCAAATGGAGG	0.388													54	117					0	0	1	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118351283	118351283	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118351283G>A	uc001lco.1	+	3	68	c.50G>A	c.(49-51)GGA>GAA	p.G17E	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.G17E|PNLIPRP1_uc001lcn.2_Missense_Mutation_p.G17E|PNLIPRP1_uc009xys.1_RNA	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	17					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		TTCTCTGTAGGAAAAGAAGTT	0.537													41	109					0	0	1	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118351390	118351390	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118351390G>C	uc001lco.1	+	3	175	c.157G>C	c.(157-159)GGC>CGC	p.G53R	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.G53R|PNLIPRP1_uc001lcn.2_Missense_Mutation_p.G53R|PNLIPRP1_uc009xys.1_RNA	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	53					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		TGAGAAGATCGGCACCCGCTT	0.532													19	156					0	0	1	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118357408	118357408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118357408G>A	uc001lco.1	+	7	661	c.643G>A	c.(643-645)GAC>AAC	p.D215N	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.D215N|PNLIPRP1_uc009xys.1_RNA	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	215					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		CTCTGATGCTGACTTTGTTGA	0.478													32	68					0	0	1	0	0
KCNK18	338567	broad.mit.edu	37	10	118960710	118960710	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:118960710G>A	uc010qsr.1	+	2	264	c.264G>A	c.(262-264)CAG>CAA	p.Q88Q		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	88						integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		GGCATCTGCAGAAGGTGAAGC	0.517													66	166					0	0	1	0	0
SLC18A2	6571	broad.mit.edu	37	10	119014811	119014811	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:119014811C>T	uc001ldd.1	+	7	755	c.724C>T	c.(724-726)CTC>TTC	p.L242F	SLC18A2_uc009xyy.1_Missense_Mutation_p.L39F	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	242	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	CGGGAGTGTGCTCTATGAGTT	0.602													12	45					0	0	1	0	0
SLC18A2	6571	broad.mit.edu	37	10	119029946	119029946	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:119029946G>A	uc001ldd.1	+	15	1443	c.1412G>A	c.(1411-1413)CGA>CAA	p.R471Q	SLC18A2_uc009xyy.1_Missense_Mutation_p.R268Q	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	471	Cytoplasmic (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	TTTTTTCTTCGAAGTCCACCT	0.393													18	109					0	0	1	0	0
PRLHR	2834	broad.mit.edu	37	10	120354453	120354453	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:120354453G>A	uc001ldp.1	-	2	443	c.304C>T	c.(304-306)CTG>TTG	p.L102L		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	102	Helical; Name=2; (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		GACAAGGCCAGGTTGCCGATG	0.687													29	58					0	0	1	0	0
EIF3A	8661	broad.mit.edu	37	10	120795706	120795706	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:120795706G>A	uc001ldu.2	-	22	4140	c.3994C>T	c.(3994-3996)CCC>TCC	p.P1332S	EIF3A_uc010qsu.1_Missense_Mutation_p.P1298S	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	1332					formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		AGAGCTGGGGGAGGAACTCGA	0.463													20	100					0	0	1	0	0
EIF3A	8661	broad.mit.edu	37	10	120801536	120801536	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:120801536G>A	uc001ldu.2	-	19	3642	c.3496C>T	c.(3496-3498)CCT>TCT	p.P1166S	EIF3A_uc010qsu.1_Missense_Mutation_p.P1132S|EIF3A_uc009xzg.1_Missense_Mutation_p.P205S	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	1166	Asp-rich.|25 X 10 AA approximate tandem repeats of [DE]-[DE]-[DE]-R-[SEVGFPILV]-[HPSN]- [RSW]-[RL]-[DRGTIHN]-[EPMANLGDT].|25; approximate.				formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		CAAGGACCAGGTCTTGAGTCA	0.443													21	66					0	0	1	0	0
EIF3A	8661	broad.mit.edu	37	10	120802039	120802039	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:120802039G>A	uc001ldu.2	-	19	3139	c.2993C>T	c.(2992-2994)CCC>CTC	p.P998L	EIF3A_uc010qsu.1_Missense_Mutation_p.P964L|EIF3A_uc009xzg.1_Missense_Mutation_p.P37L	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	998	Asp-rich.|8.|25 X 10 AA approximate tandem repeats of [DE]-[DE]-[DE]-R-[SEVGFPILV]-[HPSN]- [RSW]-[RL]-[DRGTIHN]-[EPMANLGDT].				formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		AATTCGTCTGGGAGGCCTGTC	0.572													19	208					0	0	1	0	0
EIF3A	8661	broad.mit.edu	37	10	120809324	120809324	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:120809324G>A	uc001ldu.2	-	17	2793	c.2647C>T	c.(2647-2649)CTT>TTT	p.L883F	EIF3A_uc010qsu.1_Missense_Mutation_p.L849F|EIF3A_uc009xzg.1_5'UTR	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	883					formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		TTTCTAGAAAGGGAACTATCG	0.294													72	183					0	0	1	0	0
EIF3A	8661	broad.mit.edu	37	10	120817749	120817749	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:120817749G>A	uc001ldu.2	-	12	1842	c.1696C>T	c.(1696-1698)CAG>TAG	p.Q566*	EIF3A_uc010qsu.1_Nonsense_Mutation_p.Q532*	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	566					formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		AGGATCCGCTGGTGCTCTTTT	0.433													7	20					0	0	1	0	0
EIF3A	8661	broad.mit.edu	37	10	120824973	120824973	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:120824973G>A	uc001ldu.2	-	7	1206	c.1060C>T	c.(1060-1062)CGC>TGC	p.R354C	EIF3A_uc010qsu.1_Missense_Mutation_p.R320C	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	354					formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		GTTGCAAGGCGACGCTGTTTT	0.428													30	99					0	0	1	0	0
GRK5	2869	broad.mit.edu	37	10	121189921	121189921	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:121189921C>T	uc001led.2	+	7	801	c.568C>T	c.(568-570)CGA>TGA	p.R190*	GRK5_uc009xzh.2_Nonsense_Mutation_p.R85*|GRK5_uc010qta.1_Nonsense_Mutation_p.R85*	NM_005308	NP_005299	P34947	GRK5_HUMAN	G protein-coupled receptor kinase 5	190	Protein kinase.				G-protein signaling, coupled to cAMP nucleotide second messenger|regulation of G-protein coupled receptor protein signaling pathway|tachykinin receptor signaling pathway	cytoplasm|plasma membrane|soluble fraction	ATP binding|G-protein coupled receptor kinase activity|phospholipid binding|protein kinase C binding|signal transducer activity			lung(2)|stomach(1)	3		Lung NSC(174;0.0971)|all_lung(145;0.127)|Ovarian(717;0.249)		all cancers(201;0.0227)		CAGGCAGTATCGAGTGCTAGG	0.458													49	108					0	0	1	0	0
TIAL1	7073	broad.mit.edu	37	10	121336989	121336989	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:121336989G>A	uc001lei.1	-	9	1275	c.711C>T	c.(709-711)TTC>TTT	p.F237F	TIAL1_uc001leh.1_Silent_p.F215F|TIAL1_uc001lej.1_Silent_p.F254F|TIAL1_uc001lek.1_Silent_p.F114F|TIAL1_uc009xzi.1_Silent_p.F106F|TIAL1_uc010qtb.1_Silent_p.F114F	NM_003252	NP_003243	Q01085	TIAR_HUMAN	TIA-1 related protein isoform 1	237	RRM 3.				apoptosis|defense response|induction of apoptosis|regulation of transcription from RNA polymerase II promoter	lysosome|nucleus|stress granule	nucleotide binding|RNA binding			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.00239)|BRCA - Breast invasive adenocarcinoma(275;0.0932)		CCTTTTCTGGGAAAACTCTTA	0.318													28	48					0	0	1	0	0
TIAL1	7073	broad.mit.edu	37	10	121337200	121337200	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:121337200G>A	uc001lei.1	-	8	1169	c.605C>T	c.(604-606)CCA>CTA	p.P202L	TIAL1_uc001leh.1_Missense_Mutation_p.P180L|TIAL1_uc001lej.1_Missense_Mutation_p.P219L|TIAL1_uc001lek.1_Missense_Mutation_p.P79L|TIAL1_uc009xzi.1_Missense_Mutation_p.P71L|TIAL1_uc010qtb.1_Missense_Mutation_p.P79L	NM_003252	NP_003243	Q01085	TIAR_HUMAN	TIA-1 related protein isoform 1	202					apoptosis|defense response|induction of apoptosis|regulation of transcription from RNA polymerase II promoter	lysosome|nucleus|stress granule	nucleotide binding|RNA binding			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.00239)|BRCA - Breast invasive adenocarcinoma(275;0.0932)		ACAATTTTTTGGACTTGACTG	0.368													59	144					0	0	1	0	0
SEC23IP	11196	broad.mit.edu	37	10	121652342	121652342	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:121652342C>T	uc001leu.1	+	1	120	c.48C>T	c.(46-48)TCC>TCT	p.S16S	SEC23IP_uc010qtc.1_5'UTR	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	16	Interaction with SEC23A.				Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		CCTCCACTTCCTCATCGGGCA	0.627													8	32					0	0	1	0	0
WDR11	55717	broad.mit.edu	37	10	122626202	122626202	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:122626202C>T	uc010qtf.1	+	8	1354	c.1116C>T	c.(1114-1116)GCC>GCT	p.A372A	WDR11_uc010qte.1_Intron|WDR11_uc001lfd.1_5'UTR	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	372	WD 3.					integral to membrane					0						ATGCAGCCGCCCTCGTAGTGA	0.463													44	104					0	0	1	0	0
WDR11	55717	broad.mit.edu	37	10	122664263	122664264	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:122664263_122664264CC>TT	uc010qtf.1	+	25	3371_3372	c.3133_3134CC>TT	c.(3133-3135)CCC>TTC	p.P1045F	WDR11_uc010qte.1_Missense_Mutation_p.P647F|WDR11_uc001lfd.1_Missense_Mutation_p.P563F|WDR11_uc009xzn.2_Missense_Mutation_p.P336F|uc001lfe.1_5'Flank	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	1045						integral to membrane					0						CTCGTCAGGCCCCTCTCAGAGC	0.446													29	90					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123239513	123239513	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123239513G>A	uc010qtk.1	-	19	2971	c.2324C>T	c.(2323-2325)CCT>CTT	p.P775L	FGFR2_uc010qtg.1_Missense_Mutation_p.P663L|FGFR2_uc010qth.1_Missense_Mutation_p.P660L|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Missense_Mutation_p.P776L|FGFR2_uc010qtl.1_Missense_Mutation_p.P659L|FGFR2_uc010qtm.1_Missense_Mutation_p.P658L|FGFR2_uc001lfg.3_Missense_Mutation_p.P383L|FGFR2_uc001lfk.1_RNA	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	775	Cytoplasmic (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	CTGTTCGAGAGGTTGGCTGAG	0.453		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				59	136					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123244952	123244952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123244952C>T	uc010qtk.1	-	17	2799	c.2152G>A	c.(2152-2154)GAA>AAA	p.E718K	FGFR2_uc010qtg.1_Missense_Mutation_p.E606K|FGFR2_uc010qth.1_Missense_Mutation_p.E603K|FGFR2_uc010qti.1_Missense_Mutation_p.E629K|FGFR2_uc010qtj.1_Missense_Mutation_p.E719K|FGFR2_uc010qtl.1_Missense_Mutation_p.E602K|FGFR2_uc010qtm.1_Missense_Mutation_p.E601K|FGFR2_uc001lfl.3_Missense_Mutation_p.E719K|FGFR2_uc001lfm.2_Missense_Mutation_p.E630K|FGFR2_uc001lfg.3_Missense_Mutation_p.E326K|FGFR2_uc001lfk.1_5'Flank	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	718	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	CTGTGTCCTTCCTTCAGCAGC	0.537		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				50	118					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123256123	123256123	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123256123C>T	uc010qtk.1	-	14	2433	c.1786G>A	c.(1786-1788)GAG>AAG	p.E596K	FGFR2_uc010qtg.1_Missense_Mutation_p.E484K|FGFR2_uc010qth.1_Missense_Mutation_p.E481K|FGFR2_uc010qti.1_Missense_Mutation_p.E507K|FGFR2_uc010qtj.1_Missense_Mutation_p.E597K|FGFR2_uc010qtl.1_Missense_Mutation_p.E480K|FGFR2_uc010qtm.1_Missense_Mutation_p.E479K|FGFR2_uc001lfl.3_Missense_Mutation_p.E597K|FGFR2_uc001lfm.2_Missense_Mutation_p.E508K|FGFR2_uc001lfg.3_Missense_Mutation_p.E204K	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	596	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GTCATCTGCTCCTCAGGAACA	0.517		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				90	223					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123279501	123279501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123279501C>T	uc010qtk.1	-	7	1578	c.931G>A	c.(931-933)GTT>ATT	p.V311I	FGFR2_uc010qtg.1_Intron|FGFR2_uc010qth.1_Missense_Mutation_p.V196I|FGFR2_uc010qti.1_Missense_Mutation_p.V222I|FGFR2_uc010qtj.1_Missense_Mutation_p.V311I|FGFR2_uc010qtl.1_Missense_Mutation_p.V311I|FGFR2_uc010qtm.1_Missense_Mutation_p.V196I|FGFR2_uc001lfl.3_Missense_Mutation_p.V311I|FGFR2_uc001lfm.2_Missense_Mutation_p.V222I|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Missense_Mutation_p.V330I|FGFR2_uc010qto.1_Missense_Mutation_p.V215I|FGFR2_uc001lfo.1_Missense_Mutation_p.V330I|FGFR2_uc010qtp.1_Missense_Mutation_p.V330I|FGFR2_uc001lfg.3_5'Flank	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	311	Ig-like C2-type 3.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	ACCTTGAGAACCTTGAGGTAG	0.522		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				29	60					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123298188	123298188	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123298188G>A	uc010qtk.1	-	6	1313	c.666C>T	c.(664-666)GTC>GTT	p.V222V	FGFR2_uc010qtg.1_Silent_p.V222V|FGFR2_uc010qth.1_Silent_p.V107V|FGFR2_uc010qti.1_Silent_p.V133V|FGFR2_uc010qtj.1_Silent_p.V222V|FGFR2_uc010qtl.1_Silent_p.V222V|FGFR2_uc010qtm.1_Silent_p.V107V|FGFR2_uc001lfl.3_Silent_p.V222V|FGFR2_uc001lfm.2_Silent_p.V133V|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Silent_p.V241V|FGFR2_uc010qto.1_Silent_p.V126V|FGFR2_uc001lfo.1_Silent_p.V241V|FGFR2_uc010qtp.1_Silent_p.V241V|FGFR2_uc010qtq.1_Silent_p.V241V	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	222	Ig-like C2-type 2.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	TGTCAGATGGGACCACACTTT	0.453		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				10	93					0	0	1	0	0
ATE1	11101	broad.mit.edu	37	10	123629551	123629551	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123629551G>A	uc001lfp.2	-	8	1027	c.945C>T	c.(943-945)TTC>TTT	p.F315F	ATE1_uc001lfq.2_Silent_p.F315F|ATE1_uc010qtr.1_Silent_p.F200F|ATE1_uc010qts.1_Silent_p.F219F|ATE1_uc010qtt.1_Silent_p.F308F|ATE1_uc001lfr.2_Silent_p.F16F|ATE1_uc009xzu.2_Intron	NM_007041	NP_008972	O95260	ATE1_HUMAN	arginyltransferase 1 isoform 2	315					protein arginylation	cytoplasm|nucleus	acyltransferase activity|arginyltransferase activity				0		all_neural(114;0.061)|Lung NSC(174;0.095)|all_lung(145;0.124)|Breast(234;0.212)				GGAATCTTGTGAACTGCAGTC	0.338													35	69					0	0	1	0	0
NSMCE4A	54780	broad.mit.edu	37	10	123730536	123730536	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123730536G>A	uc001lfs.2	-	3	449	c.419C>T	c.(418-420)GCT>GTT	p.A140V	NSMCE4A_uc009xzv.2_Missense_Mutation_p.A140V|NSMCE4A_uc001lft.2_5'UTR|NSMCE4A_uc010qtu.1_5'UTR|NSMCE4A_uc001lfu.1_Missense_Mutation_p.A140V	NM_017615	NP_060085	Q9NXX6	NSE4A_HUMAN	non-SMC element 4 homolog A	140											0		all_neural(114;0.138)|Glioma(114;0.222)				CAAATCTGAAGCCAAAACAAG	0.393													17	42					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123842272	123842272	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123842272G>A	uc001lfv.2	+	4	617	c.257G>A	c.(256-258)GGA>GAA	p.G86E	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.G86E|TACC2_uc010qtv.1_Missense_Mutation_p.G86E	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	86						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GACCCACAGGGAGCCAGGGGG	0.637													30	88					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123842627	123842627	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123842627C>T	uc001lfv.2	+	4	972	c.612C>T	c.(610-612)CCC>CCT	p.P204P	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.P204P|TACC2_uc010qtv.1_Silent_p.P204P	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	204						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CGCCAGTACCCCTCAGAGAGC	0.582													4	46					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123843062	123843062	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123843062C>T	uc001lfv.2	+	4	1407	c.1047C>T	c.(1045-1047)GGC>GGT	p.G349G	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.G349G|TACC2_uc010qtv.1_Silent_p.G349G	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	349						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TGCCCTGGGGCTTGCCAAGTC	0.627													22	65					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123844591	123844591	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123844591C>T	uc001lfv.2	+	4	2936	c.2576C>T	c.(2575-2577)TCT>TTT	p.S859F	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.S859F|TACC2_uc010qtv.1_Missense_Mutation_p.S859F	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	859						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AAAGAGACTTCTCCAAGCCAT	0.512													41	88					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123845774	123845774	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123845774G>A	uc001lfv.2	+	4	4119	c.3759G>A	c.(3757-3759)GTG>GTA	p.V1253V	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.V1253V|TACC2_uc010qtv.1_Silent_p.V1253V	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1253						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ACAGTGGAGTGAAAGCTGTTT	0.592													17	141					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123846092	123846092	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123846092G>A	uc001lfv.2	+	4	4437	c.4077G>A	c.(4075-4077)GGG>GGA	p.G1359G	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.G1359G|TACC2_uc010qtv.1_Silent_p.G1359G	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1359						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGGCCAGTGGGGAGGGCATGG	0.622													18	35					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123970966	123970966	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123970966G>A	uc001lfv.2	+	9	7386	c.7026G>A	c.(7024-7026)TGG>TGA	p.W2342*	TACC2_uc001lfw.2_Nonsense_Mutation_p.W488*|TACC2_uc009xzx.2_Nonsense_Mutation_p.W2297*|TACC2_uc010qtv.1_Nonsense_Mutation_p.W2346*|TACC2_uc001lfx.2_Nonsense_Mutation_p.W46*|TACC2_uc001lfy.2_Nonsense_Mutation_p.W46*|TACC2_uc001lfz.2_Nonsense_Mutation_p.W420*|TACC2_uc001lga.2_Nonsense_Mutation_p.W420*|TACC2_uc009xzy.2_Nonsense_Mutation_p.W420*|TACC2_uc001lgb.2_Nonsense_Mutation_p.W377*|TACC2_uc010qtw.1_Nonsense_Mutation_p.W437*	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2342	SPAZ.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TTGACAAGTGGGATGACCCCA	0.463													110	248					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123971140	123971140	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123971140C>T	uc001lfv.2	+	9	7560	c.7200C>T	c.(7198-7200)ATC>ATT	p.I2400I	TACC2_uc001lfw.2_Silent_p.I546I|TACC2_uc009xzx.2_Silent_p.I2355I|TACC2_uc010qtv.1_Silent_p.I2404I|TACC2_uc001lfx.2_Silent_p.I104I|TACC2_uc001lfy.2_Silent_p.I104I|TACC2_uc001lfz.2_Silent_p.I478I|TACC2_uc001lga.2_Silent_p.I478I|TACC2_uc009xzy.2_Silent_p.I478I|TACC2_uc001lgb.2_Silent_p.I435I|TACC2_uc010qtw.1_Silent_p.I495I	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2400	SPAZ.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CCTTTGAGATCCCAGCCAGTG	0.532													30	104					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123971151	123971151	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123971151C>T	uc001lfv.2	+	9	7571	c.7211C>T	c.(7210-7212)GCT>GTT	p.A2404V	TACC2_uc001lfw.2_Missense_Mutation_p.A550V|TACC2_uc009xzx.2_Missense_Mutation_p.A2359V|TACC2_uc010qtv.1_Missense_Mutation_p.A2408V|TACC2_uc001lfx.2_Missense_Mutation_p.A108V|TACC2_uc001lfy.2_Missense_Mutation_p.A108V|TACC2_uc001lfz.2_Missense_Mutation_p.A482V|TACC2_uc001lga.2_Missense_Mutation_p.A482V|TACC2_uc009xzy.2_Missense_Mutation_p.A482V|TACC2_uc001lgb.2_Missense_Mutation_p.A439V|TACC2_uc010qtw.1_Missense_Mutation_p.A499V	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2404						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CCAGCCAGTGCTATGGAAGCC	0.542													25	94					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123987394	123987394	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123987394G>A	uc001lfv.2	+	14	8127	c.7767G>A	c.(7765-7767)GCG>GCA	p.A2589A	TACC2_uc001lfw.2_Silent_p.A735A|TACC2_uc009xzx.2_Silent_p.A2544A|TACC2_uc010qtv.1_Silent_p.A2593A|TACC2_uc001lfx.2_Silent_p.A293A|TACC2_uc001lfy.2_Silent_p.A289A|TACC2_uc001lfz.2_Silent_p.A667A|TACC2_uc001lga.2_Silent_p.A667A|TACC2_uc009xzy.2_Silent_p.A679A|TACC2_uc001lgb.2_Silent_p.A624A	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2589						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ACACTGCTGCGAAAAACCAGC	0.522													52	101					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123989933	123989933	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:123989933C>T	uc001lfv.2	+	16	8465	c.8105C>T	c.(8104-8106)TCC>TTC	p.S2702F	TACC2_uc001lfw.2_Missense_Mutation_p.S848F|TACC2_uc009xzx.2_Intron|TACC2_uc010qtv.1_Intron|TACC2_uc001lfx.2_Intron|TACC2_uc001lfy.2_Intron|TACC2_uc001lfz.2_Missense_Mutation_p.S780F|TACC2_uc001lga.2_Intron|TACC2_uc009xzy.2_Intron|TACC2_uc001lgb.2_Intron	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2702	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GCTTTGGCTTCCCGCAGCCAC	0.592													32	66					0	0	1	0	0
BTBD16	118663	broad.mit.edu	37	10	124045712	124045712	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124045712C>T	uc001lgc.1	+	5	585	c.334C>T	c.(334-336)CTG>TTG	p.L112L	BTBD16_uc001lgd.1_Silent_p.L111L	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	112										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CCTGAAAGCCCTGGCGCAGGG	0.602													52	115					0	0	1	0	0
BTBD16	118663	broad.mit.edu	37	10	124045738	124045738	+	Silent	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124045738G>C	uc001lgc.1	+	5	611	c.360G>C	c.(358-360)CTG>CTC	p.L120L	BTBD16_uc001lgd.1_Silent_p.L119L	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	120										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CACACCCCCTGAGGGAGCTGG	0.602													35	96					0	0	1	0	0
BTBD16	118663	broad.mit.edu	37	10	124050683	124050683	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124050683C>T	uc001lgc.1	+	7	815	c.564C>T	c.(562-564)ATC>ATT	p.I188I	BTBD16_uc001lgd.1_Silent_p.I187I	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	188	BTB.									skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CCGCCCACATCCTCCAGTTCA	0.577													32	86					0	0	1	0	0
PLEKHA1	59338	broad.mit.edu	37	10	124189150	124189150	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124189150C>T	uc001lge.1	+	12	1034	c.911C>T	c.(910-912)CCC>CTC	p.P304L	PLEKHA1_uc001lgf.1_3'UTR|PLEKHA1_uc001lgg.1_Missense_Mutation_p.P304L	NM_001001974	NP_001001974	Q9HB21	PKHA1_HUMAN	pleckstrin homology domain containing, family A	304					B cell receptor signaling pathway|cellular response to hydrogen peroxide|establishment of protein localization|negative regulation of protein kinase B signaling cascade|phosphatidylinositol 3-kinase cascade|ruffle organization	cytoplasm|nucleus|ruffle membrane	PDZ domain binding|phosphatidylinositol-3,4-bisphosphate binding			kidney(1)	1		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GAGCATCCCCCCGGTCCTTCA	0.507													11	37					0	0	1	0	0
HTRA1	5654	broad.mit.edu	37	10	124248484	124248484	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124248484C>T	uc001lgj.2	+	2	667	c.539C>T	c.(538-540)GCC>GTC	p.A180V		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	180					proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				GAGAAGATCGCCCCTGCCGTG	0.448													37	108					0	0	1	0	0
HTRA1	5654	broad.mit.edu	37	10	124266334	124266334	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124266334G>A	uc001lgj.2	+	4	1033	c.905G>A	c.(904-906)CGA>CAA	p.R302Q		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	302	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				ACCACCCAGCGAGGCGGCAAA	0.622													27	72					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124330411	124330411	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124330411C>T	uc001lgk.1	+	4	251	c.145C>T	c.(145-147)CCA>TCA	p.P49S	DMBT1_uc001lgl.1_Missense_Mutation_p.P49S|DMBT1_uc001lgm.1_Missense_Mutation_p.P49S|DMBT1_uc009xzz.1_Missense_Mutation_p.P49S|DMBT1_uc010qtx.1_Missense_Mutation_p.P49S|DMBT1_uc009yaa.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	49					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGCAGGTTCTCCATTTCCCTC	0.552													60	135					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124345586	124345586	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124345586C>T	uc001lgk.1	+	16	1576	c.1470C>T	c.(1468-1470)TCC>TCT	p.S490S	DMBT1_uc001lgl.1_Silent_p.S480S|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Silent_p.S490S|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	490					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GATCTGAATCCAGTTTGGCCC	0.542													119	312					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124345685	124345685	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124345685G>A	uc001lgk.1	+	16	1675	c.1569G>A	c.(1567-1569)TGG>TGA	p.W523*	DMBT1_uc001lgl.1_Nonsense_Mutation_p.W513*|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Nonsense_Mutation_p.W523*|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	523	SRCR 4.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ATGACAGCTGGGACACCAATG	0.617													161	376					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124348598	124348598	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124348598G>A	uc001lgk.1	+	17	2028	c.1922G>A	c.(1921-1923)AGG>AAG	p.R641K	DMBT1_uc001lgl.1_Missense_Mutation_p.R631K|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.R641K|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	641	SRCR 5.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTGGTCTGCAGGCAGCTGGGC	0.612													36	389					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124352006	124352006	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124352006G>A	uc001lgk.1	+	20	2501	c.2395G>A	c.(2395-2397)GAT>AAT	p.D799N	DMBT1_uc001lgl.1_Missense_Mutation_p.D789N|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.D799N|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.D412N	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	799	SRCR 6.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGTTCTGGATGATGTGCGCTG	0.607													25	231					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124358351	124358351	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124358351G>A	uc001lgk.1	+	26	3124	c.3018G>A	c.(3016-3018)GTG>GTA	p.V1006V	DMBT1_uc001lgl.1_Silent_p.V996V|DMBT1_uc001lgm.1_Silent_p.V507V|DMBT1_uc009xzz.1_Silent_p.V1006V|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1006	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AGGGCCGAGTGGAGGTCCTAT	0.572													141	450					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124377772	124377772	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124377772G>A	uc001lgk.1	+	38	4850	c.4744G>A	c.(4744-4746)GAG>AAG	p.E1582K	DMBT1_uc001lgl.1_Missense_Mutation_p.E1572K|DMBT1_uc001lgm.1_Missense_Mutation_p.E954K|DMBT1_uc009xzz.1_Missense_Mutation_p.E1582K|DMBT1_uc010qtx.1_Missense_Mutation_p.E433K|DMBT1_uc009yab.1_Missense_Mutation_p.E285K|DMBT1_uc009yac.1_5'Flank	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1582	SRCR 12.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CTCAGGACACGAGTCTTACCT	0.597													59	159					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124380660	124380660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124380660G>A	uc001lgk.1	+	41	5091	c.4985G>A	c.(4984-4986)GGA>GAA	p.G1662E	DMBT1_uc001lgl.1_Missense_Mutation_p.G1652E|DMBT1_uc001lgm.1_Missense_Mutation_p.G1034E|DMBT1_uc009xzz.1_Missense_Mutation_p.G1662E|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.G365E|DMBT1_uc009yac.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1662	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGCTCCTGGGGAACCGTGTGT	0.592													117	324					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124389907	124389907	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124389907A>G	uc001lgk.1	+	45	5645	c.5539A>G	c.(5539-5541)ATA>GTA	p.I1847V	DMBT1_uc001lgl.1_Missense_Mutation_p.I1837V|DMBT1_uc001lgm.1_Missense_Mutation_p.I1219V|DMBT1_uc009xzz.1_Missense_Mutation_p.I1847V|DMBT1_uc010qtx.1_Missense_Mutation_p.I567V|DMBT1_uc009yab.1_Missense_Mutation_p.I550V|DMBT1_uc009yac.1_Missense_Mutation_p.I141V	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1847	CUB 1.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TACCAGGCAAATATTTACATC	0.408													26	51					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124390561	124390562	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124390561_124390562GG>AA	uc001lgk.1	+	46	5829_5830	c.5723_5724GG>AA	c.(5722-5724)GGG>GAA	p.G1908E	DMBT1_uc001lgl.1_Missense_Mutation_p.G1898E|DMBT1_uc001lgm.1_Missense_Mutation_p.G1280E|DMBT1_uc009xzz.1_Missense_Mutation_p.G1908E|DMBT1_uc010qtx.1_Missense_Mutation_p.G628E|DMBT1_uc009yab.1_Missense_Mutation_p.G611E|DMBT1_uc009yac.1_Missense_Mutation_p.G202E	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1908	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGCACCTGGGGGACAGTTTGTG	0.48													17	39					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124392769	124392769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124392769C>T	uc001lgk.1	+	49	6179	c.6073C>T	c.(6073-6075)CCC>TCC	p.P2025S	DMBT1_uc001lgl.1_Missense_Mutation_p.P2015S|DMBT1_uc001lgm.1_Missense_Mutation_p.P1397S|DMBT1_uc009xzz.1_Missense_Mutation_p.P2024S|DMBT1_uc010qtx.1_Missense_Mutation_p.P745S|DMBT1_uc009yab.1_Missense_Mutation_p.P728S|DMBT1_uc009yac.1_Missense_Mutation_p.P319S	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2025	CUB 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CCCATTCTATCCCGGGAACTA	0.507													32	93					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124395538	124395538	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124395538G>A	uc001lgk.1	+	50	6299	c.6193G>A	c.(6193-6195)GAA>AAA	p.E2065K	DMBT1_uc001lgl.1_Missense_Mutation_p.E2055K|DMBT1_uc001lgm.1_Missense_Mutation_p.E1437K|DMBT1_uc009xzz.1_Missense_Mutation_p.E2064K|DMBT1_uc010qtx.1_Missense_Mutation_p.E785K|DMBT1_uc009yab.1_Missense_Mutation_p.E768K|DMBT1_uc009yac.1_Missense_Mutation_p.E359K	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2065	CUB 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGATTATATTGAAGTTTTCGA	0.507													19	52					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124399574	124399574	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124399574G>A	uc001lgk.1	+	52	6680	c.6574G>A	c.(6574-6576)GAC>AAC	p.D2192N	DMBT1_uc001lgl.1_Missense_Mutation_p.D2182N|DMBT1_uc001lgm.1_Missense_Mutation_p.D1564N|DMBT1_uc009xzz.1_Missense_Mutation_p.D2191N|DMBT1_uc010qtx.1_Missense_Mutation_p.D912N|DMBT1_uc009yab.1_Missense_Mutation_p.D895N|DMBT1_uc009yac.1_Missense_Mutation_p.D486N	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2192	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGACACCATCGACTATTCCAA	0.517													19	40					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124402853	124402853	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124402853A>G	uc001lgk.1	+	53	7287	c.7181A>G	c.(7180-7182)GAC>GGC	p.D2394G	DMBT1_uc001lgl.1_Missense_Mutation_p.D2384G|DMBT1_uc001lgm.1_Missense_Mutation_p.D1766G|DMBT1_uc009xzz.1_Missense_Mutation_p.D2393G|DMBT1_uc010qtx.1_Missense_Mutation_p.D1114G|DMBT1_uc009yab.1_Missense_Mutation_p.D1097G|DMBT1_uc009yac.1_Missense_Mutation_p.D688G	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2394					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GAAAAGGTGGACGTCGTCCTG	0.627													21	42					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124402857	124402857	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124402857C>T	uc001lgk.1	+	53	7291	c.7185C>T	c.(7183-7185)GTC>GTT	p.V2395V	DMBT1_uc001lgl.1_Silent_p.V2385V|DMBT1_uc001lgm.1_Silent_p.V1767V|DMBT1_uc009xzz.1_Silent_p.V2394V|DMBT1_uc010qtx.1_Silent_p.V1115V|DMBT1_uc009yab.1_Silent_p.V1098V|DMBT1_uc009yac.1_Silent_p.V689V	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2395					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AGGTGGACGTCGTCCTGGGTC	0.647													9	48					0	0	1	0	0
C10orf120	399814	broad.mit.edu	37	10	124459232	124459232	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124459232C>T	uc001lgn.2	-	1	107	c.75G>A	c.(73-75)AGG>AGA	p.R25R		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	25										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				TTTCATTCTTCCTTTCTTGCA	0.448													24	65					0	0	1	0	0
C10orf120	399814	broad.mit.edu	37	10	124459274	124459274	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124459274C>T	uc001lgn.2	-	1	65	c.33G>A	c.(31-33)AGG>AGA	p.R11R		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	11										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				GTTTTTCAATCCTCTGACAGT	0.428													22	64					0	0	1	0	0
CUZD1	50624	broad.mit.edu	37	10	124591827	124591827	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124591827T>C	uc001lgq.2	-	9	2123	c.1791A>G	c.(1789-1791)GCA>GCG	p.A597A	CUZD1_uc001lgp.2_Silent_p.A316A|CUZD1_uc009yad.2_Silent_p.A316A|CUZD1_uc009yaf.2_Silent_p.A231A|CUZD1_uc001lgr.2_Silent_p.A316A|CUZD1_uc010qty.1_Silent_p.A316A|CUZD1_uc009yae.2_Silent_p.A316A|CUZD1_uc001lgs.2_Silent_p.A597A|CUZD1_uc010qtz.1_Silent_p.A597A	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	597	Cytoplasmic (Potential).				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		ATTTGTAGTCTGCCCGTTGAT	0.448													21	215					0	0	1	0	0
CUZD1	50624	broad.mit.edu	37	10	124593205	124593205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124593205C>T	uc001lgq.2	-	8	1966	c.1634G>A	c.(1633-1635)AGT>AAT	p.S545N	CUZD1_uc001lgp.2_Missense_Mutation_p.S264N|CUZD1_uc009yad.2_Missense_Mutation_p.S264N|CUZD1_uc009yaf.2_Missense_Mutation_p.S179N|CUZD1_uc001lgr.2_Missense_Mutation_p.S264N|CUZD1_uc010qty.1_Missense_Mutation_p.S264N|CUZD1_uc009yae.2_Missense_Mutation_p.S264N|CUZD1_uc001lgs.2_Missense_Mutation_p.S545N|CUZD1_uc010qtz.1_Missense_Mutation_p.S545N	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	545	Extracellular (Potential).				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		GCCACTTGCACTTCGATCCCT	0.393													43	115					0	0	1	0	0
CUZD1	50624	broad.mit.edu	37	10	124594501	124594501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124594501C>T	uc001lgq.2	-	7	1435	c.1103G>A	c.(1102-1104)GGA>GAA	p.G368E	CUZD1_uc001lgp.2_Missense_Mutation_p.G87E|CUZD1_uc009yad.2_Missense_Mutation_p.G87E|CUZD1_uc009yaf.2_Missense_Mutation_p.G2E|CUZD1_uc001lgr.2_Missense_Mutation_p.G87E|CUZD1_uc010qty.1_Missense_Mutation_p.G87E|CUZD1_uc009yae.2_Missense_Mutation_p.G87E|CUZD1_uc001lgs.2_Missense_Mutation_p.G368E|CUZD1_uc010qtz.1_Missense_Mutation_p.G368E	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	368	Extracellular (Potential).|ZP.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		AGAATTATGTCCCATTTCACA	0.358													19	70					0	0	1	0	0
CUZD1	50624	broad.mit.edu	37	10	124594553	124594553	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124594553C>T	uc001lgq.2	-	7	1383	c.1051G>A	c.(1051-1053)GAA>AAA	p.E351K	CUZD1_uc001lgp.2_Missense_Mutation_p.E70K|CUZD1_uc009yad.2_Missense_Mutation_p.E70K|CUZD1_uc009yaf.2_5'UTR|CUZD1_uc001lgr.2_Missense_Mutation_p.E70K|CUZD1_uc010qty.1_Missense_Mutation_p.E70K|CUZD1_uc009yae.2_Missense_Mutation_p.E70K|CUZD1_uc001lgs.2_Missense_Mutation_p.E351K|CUZD1_uc010qtz.1_Missense_Mutation_p.E351K	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	351	Extracellular (Potential).|ZP.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		GTGATCACTTCAGAAGTTGAG	0.338													30	74					0	0	1	0	0
CUZD1	50624	broad.mit.edu	37	10	124596525	124596525	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124596525G>A	uc001lgq.2	-	5	971	c.639C>T	c.(637-639)GCC>GCT	p.A213A	CUZD1_uc001lgp.2_5'UTR|CUZD1_uc009yad.2_5'UTR|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_5'UTR|CUZD1_uc010qty.1_Intron|CUZD1_uc009yae.2_Intron|CUZD1_uc001lgs.2_Silent_p.A213A|CUZD1_uc010qtz.1_Silent_p.A213A	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	213	Extracellular (Potential).|CUB 2.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		CATCATAGATGGCAAGAAAAT	0.443													17	46					0	0	1	0	0
C10orf88	80007	broad.mit.edu	37	10	124692119	124692119	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124692119G>A	uc001lgw.2	-	6	1387	c.1162C>T	c.(1162-1164)CTG>TTG	p.L388L	C10orf88_uc001lgx.2_Silent_p.L290L	NM_024942	NP_079218	Q9H8K7	CJ088_HUMAN	hypothetical protein LOC80007	388											0		all_neural(114;0.0765)|Lung NSC(174;0.163)|all_lung(145;0.205)		Colorectal(40;0.0686)|COAD - Colon adenocarcinoma(40;0.0735)		TTTTCCATCAGTTCCATATTT	0.308													11	49					0	0	1	0	0
IKZF5	64376	broad.mit.edu	37	10	124755623	124755623	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124755623C>T	uc001lha.2	-	4	502	c.203G>A	c.(202-204)GGA>GAA	p.G68E	IKZF5_uc001lgz.2_5'Flank	NM_022466	NP_071911	Q9H5V7	IKZF5_HUMAN	zinc finger protein, subfamily 1A, 5	68					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_neural(114;0.169)|Colorectal(57;0.178)|Glioma(114;0.222)		Colorectal(40;0.0701)|COAD - Colon adenocarcinoma(40;0.0754)		TACTAACATTCCTGAGTTTTC	0.423													31	76					0	0	1	0	0
ACADSB	36	broad.mit.edu	37	10	124793927	124793927	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124793927C>T	uc001lhb.2	+	2	215	c.98C>T	c.(97-99)TCA>TTA	p.S33L	ACADSB_uc010qub.1_5'UTR	NM_001609	NP_001600	P45954	ACDSB_HUMAN	acyl-Coenzyme A dehydrogenase, short/branched	33					branched chain family amino acid catabolic process|fatty acid metabolic process	mitochondrial matrix	flavin adenine dinucleotide binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.0811)|COAD - Colon adenocarcinoma(40;0.0835)	L-Isoleucine(DB00167)	CCTCATGTCTCAAAATCTTCC	0.363													8	103					0	0	1	0	0
ACADSB	36	broad.mit.edu	37	10	124802595	124802595	+	Missense_Mutation	SNP	C	T	T	rs138063747		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:124802595C>T	uc001lhb.2	+	6	832	c.715C>T	c.(715-717)CGT>TGT	p.R239C	ACADSB_uc010qub.1_Missense_Mutation_p.R137C	NM_001609	NP_001600	P45954	ACDSB_HUMAN	acyl-Coenzyme A dehydrogenase, short/branched	239					branched chain family amino acid catabolic process|fatty acid metabolic process	mitochondrial matrix	flavin adenine dinucleotide binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.0811)|COAD - Colon adenocarcinoma(40;0.0835)	L-Isoleucine(DB00167)	CTTAGTAGATCGTGATACTCC	0.398													45	110					0	0	1	0	0
CPXM2	119587	broad.mit.edu	37	10	125516860	125516860	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:125516860C>T	uc001lhk.1	-	12	2111	c.1786G>A	c.(1786-1788)GAT>AAT	p.D596N	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	596					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TAGCTGAAATCGTTCAGACCT	0.493													41	99					0	0	1	0	0
CPXM2	119587	broad.mit.edu	37	10	125528104	125528104	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:125528104C>T	uc001lhk.1	-	9	1562	c.1237G>A	c.(1237-1239)GAG>AAG	p.E413K	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	413					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		ATCCGCGTCTCCTCCACCAGG	0.632													42	79					0	0	1	0	0
CHST15	51363	broad.mit.edu	37	10	125805234	125805234	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:125805234G>A	uc001lhl.2	-	1	1008	c.495C>T	c.(493-495)TTC>TTT	p.F165F	CHST15_uc001lhm.2_Silent_p.F165F|CHST15_uc001lhn.2_Silent_p.F165F|CHST15_uc010que.1_Silent_p.F165F|CHST15_uc001lho.2_Silent_p.F165F	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	165	Lumenal (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						GTCTGGTCGTGAACTCAATCC	0.383													109	284					0	0	1	0	0
CHST15	51363	broad.mit.edu	37	10	125805353	125805353	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:125805353C>T	uc001lhl.2	-	1	889	c.376G>A	c.(376-378)GAA>AAA	p.E126K	CHST15_uc001lhm.2_Missense_Mutation_p.E126K|CHST15_uc001lhn.2_Missense_Mutation_p.E126K|CHST15_uc010que.1_Missense_Mutation_p.E126K|CHST15_uc001lho.2_Missense_Mutation_p.E126K	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	126	Lumenal (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						CTTGGGTTTTCGCTGTCCATC	0.438													82	178					0	0	1	0	0
CHST15	51363	broad.mit.edu	37	10	125805533	125805533	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:125805533C>T	uc001lhl.2	-	1	709	c.196G>A	c.(196-198)GAA>AAA	p.E66K	CHST15_uc001lhm.2_Missense_Mutation_p.E66K|CHST15_uc001lhn.2_Missense_Mutation_p.E66K|CHST15_uc010que.1_Missense_Mutation_p.E66K|CHST15_uc001lho.2_Missense_Mutation_p.E66K	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	66	Cytoplasmic (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						CCCCAGTTTTCGTTCCCTTCA	0.463													9	81					0	0	1	0	0
OAT	4942	broad.mit.edu	37	10	126092381	126092381	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:126092381A>G	uc001lhp.2	-	6	864	c.757T>C	c.(757-759)TGC>CGC	p.C253R	OAT_uc001lhq.2_RNA|OAT_uc001lhr.2_Missense_Mutation_p.C115R	NM_000274	NP_000265	P04181	OAT_HUMAN	ornithine aminotransferase precursor	253					cellular amino acid biosynthetic process|visual perception	mitochondrial matrix	ornithine-oxo-acid transaminase activity|protein binding|pyridoxal phosphate binding				0		all_lung(145;0.0271)|Lung NSC(174;0.0436)|Colorectal(57;0.102)|all_neural(114;0.116)			L-Ornithine(DB00129)|Pyridoxal Phosphate(DB00114)	TGCCTGGTGCAGAGCTCTCGC	0.517											OREG0020605	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	38					0	0	1	0	0
FAM53B	9679	broad.mit.edu	37	10	126370409	126370409	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:126370409G>A	uc001lhv.1	-	4	1196	c.673C>T	c.(673-675)CTG>TTG	p.L225L	FAM53B_uc001lhu.1_Silent_p.L225L|FAM53B_uc001lhw.2_Silent_p.L225L	NM_014661	NP_055476	Q14153	FA53B_HUMAN	hypothetical protein LOC9679	225										ovary(1)|pancreas(1)	2		all_lung(145;0.0191)|Lung NSC(174;0.0301)|Colorectal(57;0.106)|all_neural(114;0.117)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.15)		GACCGCTGCAGGTCCAGCCGG	0.642													5	14					0	0	1	0	0
C10orf137	26098	broad.mit.edu	37	10	127409777	127409777	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:127409777C>T	uc001liq.1	+	2	406	c.113C>T	c.(112-114)TCA>TTA	p.S38L	uc001lim.1_5'Flank|C10orf137_uc001lin.2_Missense_Mutation_p.S38L|C10orf137_uc001lio.1_Missense_Mutation_p.S38L|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	38					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				AATTAGGGATCAGCTTTATTT	0.398													35	97					0	0	1	0	0
FANK1	92565	broad.mit.edu	37	10	127668815	127668815	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:127668815G>A	uc001ljh.3	+	2	203	c.99G>A	c.(97-99)AAG>AAA	p.K33K	FANK1_uc010quk.1_Silent_p.K27K|FANK1_uc009yan.2_Silent_p.K33K|FANK1_uc001lji.2_Silent_p.K27K	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	33	Fibronectin type-III.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				ATCTGGAAAAGAAAGCCAAAC	0.438													32	44					0	0	1	0	0
ADAM12	8038	broad.mit.edu	37	10	127967522	127967522	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:127967522C>T	uc001ljk.2	-	3	635	c.222G>A	c.(220-222)CGG>CGA	p.R74R	ADAM12_uc010qul.1_Silent_p.R74R|ADAM12_uc001ljm.2_Silent_p.R74R|ADAM12_uc001ljn.2_Silent_p.R74R|ADAM12_uc001ljl.3_Silent_p.R74R	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	74					cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		CTTTGCTTTCCCGTTGTAGTC	0.343													5	27					0	0	1	0	0
DOCK1	1793	broad.mit.edu	37	10	128829926	128829926	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:128829926C>T	uc001ljt.2	+	17	1638	c.1574C>T	c.(1573-1575)TCT>TTT	p.S525F	DOCK1_uc010qun.1_Missense_Mutation_p.S546F	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	525	DHR-1.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		AAGGATAAATCTGAGAAAATA	0.338													34	83					0	0	1	0	0
DOCK1	1793	broad.mit.edu	37	10	129209148	129209148	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129209148C>T	uc001ljt.2	+	43	4389	c.4325C>T	c.(4324-4326)CCA>CTA	p.P1442L	DOCK1_uc010qun.1_Missense_Mutation_p.P1463L|DOCK1_uc009yaq.2_Missense_Mutation_p.P437L	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1442	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		TATTCTCGGCCAATCCGGAAG	0.408													11	29					0	0	1	0	0
DOCK1	1793	broad.mit.edu	37	10	129231625	129231625	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129231625C>T	uc001ljt.2	+	48	4994	c.4930C>T	c.(4930-4932)CCT>TCT	p.P1644S	DOCK1_uc010qun.1_Missense_Mutation_p.P1665S|DOCK1_uc009yaq.2_Missense_Mutation_p.P639S	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1644					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CTCATCCCGCCCTCTGTCTGT	0.612													55	91					0	0	1	0	0
NPS	594857	broad.mit.edu	37	10	129347818	129347818	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129347818C>T	uc001ljx.1	+	2	94	c.74C>T	c.(73-75)CCA>CTA	p.P25L		NM_001030013	NP_001025184	P0C0P6	NPS_HUMAN	neuropeptide S precursor	25					neuropeptide signaling pathway	extracellular region					0						TGGTGTTATCCAGTTCCATCT	0.343													22	66					0	0	1	0	0
NPS	594857	broad.mit.edu	37	10	129350866	129350866	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129350866G>A	uc001ljx.1	+	3	253	c.233G>A	c.(232-234)GGG>GAG	p.G78E		NM_001030013	NP_001025184	P0C0P6	NPS_HUMAN	neuropeptide S precursor	78					neuropeptide signaling pathway	extracellular region					0						GTTGGCACAGGGATGAAAAAA	0.413													55	148					0	0	1	0	0
FOXI2	399823	broad.mit.edu	37	10	129536850	129536850	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129536850G>A	uc009yas.2	+	2	578	c.578G>A	c.(577-579)AGG>AAG	p.R193K	uc009yar.1_5'Flank	NM_207426	NP_997309	Q6ZQN5	FOXI2_HUMAN	forkhead box I2	193	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_epithelial(44;0.0021)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)				AACTTCCGAAGGAAGAGGAAG	0.622													8	20					0	0	1	0	0
FOXI2	399823	broad.mit.edu	37	10	129536979	129536979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129536979C>T	uc009yas.2	+	2	707	c.707C>T	c.(706-708)CCA>CTA	p.P236L	uc009yar.1_5'Flank	NM_207426	NP_997309	Q6ZQN5	FOXI2_HUMAN	forkhead box I2	236					epidermal cell fate specification|otic placode formation|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_epithelial(44;0.0021)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)				TCGCCCTCTCCATCCGCACCC	0.751													4	16					0	0	1	0	0
CLRN3	119467	broad.mit.edu	37	10	129681992	129681992	+	Missense_Mutation	SNP	G	A	A	rs141771225		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129681992G>A	uc001lka.1	-	2	540	c.377C>T	c.(376-378)CCG>CTG	p.P126L	CLRN3_uc001ljz.1_Missense_Mutation_p.P58L	NM_152311	NP_689524	Q8NCR9	CLRN3_HUMAN	clarin 3	126						integral to membrane				skin(1)	1		all_epithelial(44;0.00168)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)|Colorectal(57;0.235)				CACCCCCGTCGGCCCCAGGAA	0.572													28	66					0	0	1	0	0
CLRN3	119467	broad.mit.edu	37	10	129682033	129682033	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129682033G>A	uc001lka.1	-	2	499	c.336C>T	c.(334-336)TTC>TTT	p.F112F	CLRN3_uc001ljz.1_Silent_p.F44F	NM_152311	NP_689524	Q8NCR9	CLRN3_HUMAN	clarin 3	112	Helical; (Potential).					integral to membrane				skin(1)	1		all_epithelial(44;0.00168)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)|Colorectal(57;0.235)				TGCTGTTGTAGAAGGTAAACC	0.532													44	90					0	0	1	0	0
PTPRE	5791	broad.mit.edu	37	10	129847804	129847804	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129847804G>A	uc001lkb.2	+	6	573	c.294G>A	c.(292-294)AGG>AGA	p.R98R	PTPRE_uc009yat.2_Silent_p.R109R|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Silent_p.R98R|PTPRE_uc001lkc.1_RNA|PTPRE_uc001lkd.2_Silent_p.R40R|PTPRE_uc010quq.1_5'UTR	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	98	Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				AGCAGCAAAGGGTGATGCTGC	0.542													24	70					0	0	1	0	0
PTPRE	5791	broad.mit.edu	37	10	129875931	129875931	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129875931C>T	uc001lkb.2	+	19	2055	c.1776C>T	c.(1774-1776)TTC>TTT	p.F592F	PTPRE_uc009yat.2_Silent_p.F603F|PTPRE_uc009yau.2_Silent_p.F592F|PTPRE_uc001lkd.2_Silent_p.F534F|PTPRE_uc010quq.1_Silent_p.F493F	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	592	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				AGTTTCACTTCCACGGCTGGC	0.662													7	47					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129901135	129901135	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129901135G>A	uc001lke.2	-	13	9164	c.8969C>T	c.(8968-8970)TCC>TTC	p.S2990F	MKI67_uc001lkf.2_Missense_Mutation_p.S2630F|MKI67_uc009yav.1_Missense_Mutation_p.S2565F|MKI67_uc009yaw.1_Missense_Mutation_p.S2140F	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2990					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TGGGGGCAGGGAAGTGTTGCT	0.537													40	85					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129902393	129902393	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129902393G>A	uc001lke.2	-	13	7906	c.7711C>T	c.(7711-7713)CAC>TAC	p.H2571Y	MKI67_uc001lkf.2_Missense_Mutation_p.H2211Y|MKI67_uc009yav.1_Missense_Mutation_p.H2146Y|MKI67_uc009yaw.1_Missense_Mutation_p.H1721Y	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2571	16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TCTTCAGTGTGACCTGGTGCT	0.483													37	136					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129905716	129905716	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129905716G>A	uc001lke.2	-	13	4583	c.4388C>T	c.(4387-4389)CCC>CTC	p.P1463L	MKI67_uc001lkf.2_Missense_Mutation_p.P1103L|MKI67_uc009yav.1_Missense_Mutation_p.P1038L|MKI67_uc009yaw.1_Missense_Mutation_p.P613L	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1463	16 X 122 AA approximate repeats.|4.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GTCTTCTAGGGGTTGGGCCTT	0.493													65	256					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129906709	129906709	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129906709G>A	uc001lke.2	-	13	3590	c.3395C>T	c.(3394-3396)CCA>CTA	p.P1132L	MKI67_uc001lkf.2_Missense_Mutation_p.P772L|MKI67_uc009yav.1_Missense_Mutation_p.P707L|MKI67_uc009yaw.1_Missense_Mutation_p.P282L	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1132	16 X 122 AA approximate repeats.|2.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTCTGGTGGTGGAGATTTGCA	0.463													158	395					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129913387	129913387	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:129913387C>T	uc001lke.2	-	7	1480	c.1285G>A	c.(1285-1287)GAT>AAT	p.D429N	MKI67_uc001lkf.2_Intron|MKI67_uc009yav.1_Intron|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	429					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				ACTTCCACATCTGTAGGAATA	0.428													40	105					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131666102	131666102	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:131666102C>T	uc001lki.1	-	9	888	c.829G>A	c.(829-831)GAC>AAC	p.D277N		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	286	IPT/TIG.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		AAGAAGTTGTCGCCAATTATG	0.567													34	38					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131671830	131671830	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:131671830C>T	uc001lki.1	-	8	726	c.667G>A	c.(667-669)GGC>AGC	p.G223S		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	223					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		AGCACGTGGCCGTCCACGTTG	0.527													12	36					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131755565	131755565	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:131755565C>T	uc001lki.1	-	6	570	c.511G>A	c.(511-513)GGC>AGC	p.G171S		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	171					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		TTTCTATTGCCACAACTTTTC	0.388													28	104					0	0	1	0	0
TCERG1L	256536	broad.mit.edu	37	10	133058644	133058644	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:133058644G>A	uc001lkp.2	-	4	820	c.734C>T	c.(733-735)GCC>GTC	p.A245V	TCERG1L_uc009yax.1_RNA	NM_174937	NP_777597	Q5VWI1	TCRGL_HUMAN	transcription elongation regulator 1-like	245	Poly-Ala.									large_intestine(2)|ovary(2)	4		all_cancers(35;1.22e-10)|all_epithelial(44;2.65e-09)|Lung NSC(174;0.00188)|all_lung(145;0.00307)|Melanoma(40;0.0179)|all_neural(114;0.0424)|Breast(234;0.0743)|Colorectal(57;0.09)		all cancers(32;0.000899)|OV - Ovarian serous cystadenocarcinoma(35;0.0021)|Epithelial(32;0.00276)		CATggcagcggcggcggcggt	0.527													6	11					0	0	1	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133953998	133953998	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:133953998C>T	uc001lkx.3	+	9	1388	c.1388C>T	c.(1387-1389)TCC>TTC	p.S463F		NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		GAAGAGGCTTCCCTGGAATCC	0.587													8	26					0	0	1	0	0
PWWP2B	170394	broad.mit.edu	37	10	134218356	134218356	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134218356C>T	uc001lll.3	+	2	381	c.352C>T	c.(352-354)CCT>TCT	p.P118S	PWWP2B_uc009ybe.2_Missense_Mutation_p.P118S	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	118	Pro-rich.										0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		GCCCCCGTACCCTCCCTACTT	0.756													17	20					0	0	1	0	0
INPP5A	3632	broad.mit.edu	37	10	134579348	134579348	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134579348C>T	uc001llp.2	+	12	1223	c.975C>T	c.(973-975)CCC>CCT	p.P325P	INPP5A_uc001llo.1_Silent_p.P325P|INPP5A_uc001llq.2_Silent_p.P220P	NM_005539	NP_005530	Q14642	I5P1_HUMAN	inositol polyphosphate-5-phosphatase A	325					cell communication	membrane	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|PH domain binding			skin(1)	1		all_cancers(35;8.59e-13)|all_epithelial(44;5.49e-09)|Lung NSC(174;0.000854)|all_lung(145;0.00146)|all_neural(114;0.0299)|Colorectal(31;0.0599)|Breast(234;0.0849)|Melanoma(40;0.124)|all_hematologic(284;0.196)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;0.000102)|Epithelial(32;0.00023)|all cancers(32;0.000326)		CGTTCCCTCCCAGGTATGGAA	0.498													19	55					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	134627674	134627674	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134627674C>T	uc010qux.1	-	46	6548	c.6548G>A	c.(6547-6549)GGA>GAA	p.G2183E		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		GTGCTTGCTTCCCAGATGTCC	0.587													12	39					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	134627736	134627736	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134627736G>A	uc010qux.1	-	46	6486	c.6486C>T	c.(6484-6486)ATC>ATT	p.I2162I		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		TGTCTTGGGTGATGGAGACAG	0.562													13	22					0	0	1	0	0
GPR123	84435	broad.mit.edu	37	10	134886335	134886335	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134886335C>T	uc001llw.2	+	3	369	c.369C>T	c.(367-369)TTC>TTT	p.F123F				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		CCTCAGGGTTCTTGGGACCTG	0.582													8	18					0	0	1	0	0
GPR123	84435	broad.mit.edu	37	10	134896036	134896036	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134896036C>T	uc001llw.2	+	6	1122	c.1122C>T	c.(1120-1122)TTC>TTT	p.F374F				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:Variant_position_missing_in_Q86SQ6_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		CTCCTGCCTTCTTTCAATACC	0.587													7	15					0	0	1	0	0
GPR123	84435	broad.mit.edu	37	10	134896090	134896090	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134896090G>A	uc001llw.2	+	6	1176	c.1176G>A	c.(1174-1176)AGG>AGA	p.R392R				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:Variant_position_missing_in_Q86SQ6_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		ACTTGGGGAGGGGAGGCCTTT	0.587													6	26					0	0	1	0	0
GPR123	84435	broad.mit.edu	37	10	134896158	134896158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134896158C>T	uc001llw.2	+	6	1244	c.1244C>T	c.(1243-1245)ACC>ATC	p.T415I				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:Variant_position_missing_in_Q86SQ6_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		GCCTACGAGACCCACGGCCTT	0.607													12	26					0	0	1	0	0
GPR123	84435	broad.mit.edu	37	10	134916263	134916263	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134916263G>A	uc001llx.3	+	5	754	c.318G>A	c.(316-318)AGG>AGA	p.R106R	GPR123_uc001llw.2_Silent_p.R826R	NM_001083909	NP_001077378	Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123	106	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		TGACCGCCAGGAACATCTACA	0.622													5	28					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	134973999	134973999	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134973999G>A	uc001llz.1	+	1	29	c.28G>A	c.(28-30)GAT>AAT	p.D10N		NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	10					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GGCCGCGGCGGATCTTTACGA	0.517													5	12					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	134980913	134980913	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134980913C>T	uc001llz.1	+	2	132	c.131C>T	c.(130-132)TCC>TTC	p.S44F	KNDC1_uc001lma.1_5'UTR	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	44	KIND 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GACATCCTCTCCCTGCGGGAC	0.711													3	4					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	134980930	134980930	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:134980930C>T	uc001llz.1	+	2	149	c.148C>T	c.(148-150)CTC>TTC	p.L50F	KNDC1_uc001lma.1_5'UTR	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	50	KIND 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GGACCGCGGCCTCAGCGAGCA	0.711													4	10					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135003268	135003268	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:135003268C>T	uc001llz.1	+	9	1527	c.1526C>T	c.(1525-1527)TCG>TTG	p.S509L	KNDC1_uc001lma.1_Missense_Mutation_p.S444L	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	509	KIND 2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		TCCTATGACTCGTTCTTTCTG	0.493													14	32					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135015029	135015029	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:135015029G>A	uc001llz.1	+	17	3015	c.3014G>A	c.(3013-3015)AGG>AAG	p.R1005K	KNDC1_uc001lma.1_Missense_Mutation_p.R940K|KNDC1_uc001lmb.1_Missense_Mutation_p.R417K	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1005					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GCCATGGCCAGGACCAGCAGC	0.627													49	110					0	0	1	0	0
PAOX	196743	broad.mit.edu	37	10	135193892	135193892	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:135193892G>A	uc001lmv.2	+	2	651	c.571G>A	c.(571-573)GAA>AAA	p.E191K	PAOX_uc001lmw.2_Intron|PAOX_uc001lmx.2_Missense_Mutation_p.E191K|PAOX_uc001lmy.2_Missense_Mutation_p.E191K|PAOX_uc001lmz.2_RNA|PAOX_uc001lna.2_Intron|PAOX_uc001lnb.2_RNA|PAOX_uc001lnc.2_Intron	NM_152911	NP_690875	Q6QHF9	PAOX_HUMAN	polyamine oxidase isoform 1	329					polyamine biosynthetic process|xenobiotic metabolic process	peroxisomal matrix	polyamine oxidase activity				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;4.39e-07)|OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|Epithelial(32;1.94e-06)		CTTCAACCTGGAATGCTGTGT	0.597													8	36					0	0	1	0	0
PAOX	196743	broad.mit.edu	37	10	135197711	135197711	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:135197711C>T	uc001lmv.2	+	4	1196	c.1116C>T	c.(1114-1116)GCC>GCT	p.A372A	PAOX_uc001lmw.2_Intron|PAOX_uc001lmx.2_Silent_p.A372A|PAOX_uc001lmy.2_Intron|PAOX_uc001lmz.2_RNA|PAOX_uc001lna.2_RNA|PAOX_uc001lnb.2_Intron|PAOX_uc001lnc.2_Intron	NM_152911	NP_690875	Q6QHF9	PAOX_HUMAN	polyamine oxidase isoform 1	510					polyamine biosynthetic process|xenobiotic metabolic process	peroxisomal matrix	polyamine oxidase activity				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;4.39e-07)|OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|Epithelial(32;1.94e-06)		TCCTGCCTGCCTTTGCGTACG	0.587													39	95					0	0	1	0	0
CYP2E1	1571	broad.mit.edu	37	10	135346307	135346307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:135346307C>T	uc001lnj.1	+	5	793	c.760C>T	c.(760-762)CAT>TAT	p.H254Y	CYP2E1_uc001lnk.1_Missense_Mutation_p.H117Y|CYP2E1_uc009ybl.1_Missense_Mutation_p.H55Y|CYP2E1_uc009ybm.1_5'UTR|CYP2E1_uc001lnl.1_Missense_Mutation_p.H55Y	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	254					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	GAAGGAGCACCATCAATCTCT	0.522									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				35	93					0	0	1	0	0
CYP2E1	1571	broad.mit.edu	37	10	135347379	135347379	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:135347379C>T	uc001lnj.1	+	6	978	c.945C>T	c.(943-945)CTC>CTT	p.L315L	CYP2E1_uc001lnk.1_Silent_p.L178L|CYP2E1_uc009ybl.1_Silent_p.L116L|CYP2E1_uc009ybm.1_Intron|CYP2E1_uc001lnl.1_Silent_p.L116L	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	315					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	TCCTGATTCTCATGAAATACC	0.542									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				28	62					0	0	1	0	0
SYCE1	93426	broad.mit.edu	37	10	135369385	135369385	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:135369385C>T	uc001lno.2	-	10	723	c.618G>A	c.(616-618)CTG>CTA	p.L206L	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_Silent_p.L78L|SYCE1_uc009ybn.2_Silent_p.L206L|SYCE1_uc001lnn.2_Silent_p.L170L	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	206	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TCACGTCTTCCAGTGTCGCCT	0.607													17	30					0	0	1	0	0
SCGB1C1	147199	broad.mit.edu	37	11	193729	193729	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:193729G>A	uc001loa.1	+	2	93	c.73G>A	c.(73-75)GAC>AAC	p.D25N		NM_145651	NP_663626	Q8TD33	SG1C1_HUMAN	secretoglobin, family 1C, member 1 precursor	25						extracellular region	binding			skin(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		CACAGGGGAGGACAACGATGA	0.572													12	44					0	0	1	0	0
NLRP6	171389	broad.mit.edu	37	11	280753	280753	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:280753C>T	uc010qvs.1	+	4	1019	c.1019C>T	c.(1018-1020)TCC>TTC	p.S340F	NLRP6_uc010qvt.1_Missense_Mutation_p.S340F	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	340	NACHT.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGCCTGTGTTCCCCGCAGTGC	0.687													23	41					0	0	1	0	0
NLRP6	171389	broad.mit.edu	37	11	284265	284265	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:284265G>A	uc010qvs.1	+	6	2237	c.2237G>A	c.(2236-2238)CGA>CAA	p.R746Q	NLRP6_uc010qvt.1_Missense_Mutation_p.R745Q	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	746	LRR 2.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		GCGGTCTGCCGAGACCTTTCT	0.632													11	31					0	0	1	0	0
ATHL1	80162	broad.mit.edu	37	11	291051	291051	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:291051C>T	uc010qvu.1	+	4	959	c.844C>T	c.(844-846)CCT>TCT	p.P282S	ATHL1_uc001lor.3_Missense_Mutation_p.P105S|ATHL1_uc001los.1_Missense_Mutation_p.P282S|ATHL1_uc001lou.3_5'Flank|ATHL1_uc001lov.3_5'Flank	NM_025092	NP_079368	Q32M88	ATHL1_HUMAN	ATH1, acid trehalase-like 1	282					carbohydrate metabolic process		hydrolase activity, acting on glycosyl bonds			liver(1)|central_nervous_system(1)|skin(1)	3		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.38e-28)|Epithelial(43;3.25e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		TGGCCTCAGTCCTGGGGGCCT	0.662													23	34					0	0	1	0	0
IFITM5	387733	broad.mit.edu	37	11	298534	298534	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:298534G>A	uc001low.1	-	2	402	c.366C>T	c.(364-366)TTC>TTT	p.F122F		NM_001025295	NP_001020466	A6NNB3	IFM5_HUMAN	interferon induced transmembrane protein 5	122	Extracellular (Potential).				multicellular organismal development|regulation of bone mineralization|response to biotic stimulus	integral to membrane|plasma membrane					0		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		ACTTGGTGCTGAAGAAGGCGG	0.672													13	23					0	0	1	0	0
IFITM1	8519	broad.mit.edu	37	11	314350	314350	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:314350C>T	uc001loy.3	+	1	360	c.180C>T	c.(178-180)TCC>TCT	p.S60S		NM_003641	NP_003632	P13164	IFM1_HUMAN	interferon induced transmembrane protein 1	60	Cytoplasmic (Potential).				negative regulation of cell proliferation|regulation of immune response|response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding|receptor signaling protein activity				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		TCGCCTACTCCGTGAAGGTGC	0.622													13	167					0	0	1	0	0
PKP3	11187	broad.mit.edu	37	11	397183	397183	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:397183G>A	uc001lpc.2	+	3	758	c.682G>A	c.(682-684)GGG>AGG	p.G228R		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	228					cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCGGGCAGGGGGGCTGGACTG	0.711													21	31					0	0	1	0	0
ANO9	338440	broad.mit.edu	37	11	431895	431895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:431895C>T	uc001lpi.2	-	6	503	c.418G>A	c.(418-420)GAT>AAT	p.D140N	ANO9_uc001lph.2_5'Flank|ANO9_uc010qvv.1_5'UTR	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	140	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						TTCATCAGATCCTCGAAGGTC	0.677													6	40					0	0	1	0	0
C11orf35	256329	broad.mit.edu	37	11	556039	556039	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:556039G>A	uc001lpx.2	-	11	1397	c.1334C>T	c.(1333-1335)TCC>TTC	p.S445F	uc001lpy.2_5'Flank	NM_173573	NP_775844	Q8IXW0	CK035_HUMAN	hypothetical protein LOC256329	445										pancreas(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCGCGGATGGAGAGGAGGGG	0.776													8	17					0	0	1	0	0
PHRF1	57661	broad.mit.edu	37	11	609451	609451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:609451C>T	uc001lqe.2	+	14	4126	c.3995C>T	c.(3994-3996)TCG>TTG	p.S1332L	PHRF1_uc010qwc.1_Missense_Mutation_p.S1331L|PHRF1_uc010qwd.1_Missense_Mutation_p.S1330L|PHRF1_uc010qwe.1_Missense_Mutation_p.S1328L|PHRF1_uc009ybz.1_Missense_Mutation_p.S1122L|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	1332							RNA polymerase binding|zinc ion binding				0						GAAGACCCTTCGCAGCCCCCA	0.672													6	26					0	0	1	0	0
CDHR5	53841	broad.mit.edu	37	11	618098	618098	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:618098C>T	uc001lqj.2	-	14	2079	c.1974G>A	c.(1972-1974)TCG>TCA	p.S658S	IRF7_uc009ycb.2_5'Flank|IRF7_uc010qwf.1_5'Flank|IRF7_uc001lqf.2_5'Flank|IRF7_uc010qwg.1_5'Flank|IRF7_uc001lqg.2_5'Flank|IRF7_uc001lqh.2_5'Flank|IRF7_uc001lqi.2_5'Flank|IRF7_uc010qwh.1_5'Flank|CDHR5_uc001lqk.2_Silent_p.S464S|CDHR5_uc009ycc.2_Silent_p.S492S|CDHR5_uc009ycd.2_Silent_p.S652S|CDHR5_uc001lql.2_Silent_p.S658S	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	658	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GCTTGTCCTCCGAGGGGCCGC	0.652													4	42					0	0	1	0	0
DEAF1	10522	broad.mit.edu	37	11	688045	688045	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:688045G>A	uc001lqq.1	-	4	1223	c.530C>T	c.(529-531)CCT>CTT	p.P177L	DEAF1_uc009ycf.1_RNA	NM_021008	NP_066288	O75398	DEAF1_HUMAN	deformed epidermal autoregulatory factor 1	177					embryonic skeletal system development|germ cell development|neural tube closure|regulation of mammary gland epithelial cell proliferation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|cytoplasm|extracellular region|nucleus	protein binding|zinc ion binding				0		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;1.76e-27)|Epithelial(43;8.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.55e-21)|BRCA - Breast invasive adenocarcinoma(625;4.83e-05)|Lung(200;0.0259)|LUSC - Lung squamous cell carcinoma(625;0.075)		AGGGGTTGGAGGAGACTGAGG	0.572													18	38					0	0	1	0	0
EPS8L2	64787	broad.mit.edu	37	11	721583	721583	+	Silent	SNP	C	T	T	rs144181589		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:721583C>T	uc001lqt.2	+	10	1034	c.787C>T	c.(787-789)CTG>TTG	p.L263L	EPS8L2_uc010qwj.1_Silent_p.L279L|EPS8L2_uc001lqu.2_Silent_p.L263L|EPS8L2_uc010qwk.1_Silent_p.L279L|EPS8L2_uc001lqv.2_Silent_p.L218L|EPS8L2_uc001lqw.2_5'UTR|EPS8L2_uc001lqx.2_5'Flank|EPS8L2_uc001lqy.2_5'Flank	NM_022772	NP_073609	Q9H6S3	ES8L2_HUMAN	epidermal growth factor receptor pathway	263						cytoplasm				pancreas(1)	1		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.37e-27)|Epithelial(43;2.81e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-20)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CAACTGCGCCCTGGACGACAT	0.627													13	20					0	0	1	0	0
EPS8L2	64787	broad.mit.edu	37	11	723306	723306	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:723306C>T	uc001lqt.2	+	15	1654	c.1407C>T	c.(1405-1407)ACC>ACT	p.T469T	EPS8L2_uc001lqu.2_Silent_p.T469T|EPS8L2_uc010qwk.1_Silent_p.T485T|EPS8L2_uc001lqv.2_Silent_p.T424T|EPS8L2_uc001lqw.2_Silent_p.T81T|EPS8L2_uc001lqx.2_Silent_p.T81T|EPS8L2_uc001lqy.2_5'Flank	NM_022772	NP_073609	Q9H6S3	ES8L2_HUMAN	epidermal growth factor receptor pathway	469						cytoplasm				pancreas(1)	1		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.37e-27)|Epithelial(43;2.81e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-20)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CAGAGCCCACCCCCCCGGGGG	0.582											OREG0020659	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	71					0	0	1	0	0
EPS8L2	64787	broad.mit.edu	37	11	724744	724744	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:724744C>T	uc001lqt.2	+	16	1722	c.1475C>T	c.(1474-1476)GCC>GTC	p.A492V	EPS8L2_uc001lqu.2_Missense_Mutation_p.A492V|EPS8L2_uc010qwk.1_Missense_Mutation_p.A508V|EPS8L2_uc001lqv.2_Missense_Mutation_p.A447V|EPS8L2_uc001lqw.2_Missense_Mutation_p.A104V|EPS8L2_uc001lqx.2_Missense_Mutation_p.A104V|EPS8L2_uc001lqy.2_5'UTR	NM_022772	NP_073609	Q9H6S3	ES8L2_HUMAN	epidermal growth factor receptor pathway	492	SH3.					cytoplasm				pancreas(1)	1		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.37e-27)|Epithelial(43;2.81e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-20)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCAACACCAGCCATGGCCAAG	0.617													20	41					0	0	1	0	0
EFCAB4A	283229	broad.mit.edu	37	11	828658	828658	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:828658G>A	uc001lrv.2	+	1	429	c.51G>A	c.(49-51)GGG>GGA	p.G17G	EFCAB4A_uc010qwt.1_Silent_p.G17G|EFCAB4A_uc009ycm.1_Silent_p.G17G|EFCAB4A_uc001lrw.2_5'Flank			Q8N4Y2	EFC4A_HUMAN	RecName: Full=EF-hand calcium-binding domain-containing protein 4A;	17					store-operated calcium entry		calcium ion binding				0		all_cancers(49;2.31e-08)|all_epithelial(84;3.72e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.179)|all_lung(207;0.227)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGGAGGAGGGGGAACTCGAGG	0.642													16	54					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1017688	1017688	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1017688C>T	uc001lsw.2	-	31	5164	c.5113G>A	c.(5113-5115)GAA>AAA	p.E1705K		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1705	Thr-rich.|1; truncated.|Approximate repeats.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GAGGTGGCTTCAGCATGGTGT	0.557													79	620					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1023983	1023983	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1023983C>T	uc001lsw.2	-	25	3397	c.3346G>A	c.(3346-3348)GGT>AGT	p.G1116S		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1116					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACGCACACACCCTTGTCCAGA	0.682													12	27					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1032042	1032042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1032042C>T	uc001lsw.2	-	3	178	c.127G>A	c.(127-129)GGC>AGC	p.G43S		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	43					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GAGCACTGGCCTTTGTCCGGG	0.637													9	28					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1077677	1077677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1077677C>T	uc001lsx.1	+	3	454	c.427C>T	c.(427-429)CTC>TTC	p.L143F		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	143	VWFD 1.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CCGCGCCGGCCTCACCCTCAT	0.672													8	18					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1081113	1081113	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1081113A>G	uc001lsx.1	+	11	1436	c.1409A>G	c.(1408-1410)GAG>GGG	p.E470G		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	470	VWFD 2.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CTGCTCAACGAGCTGCAGGTG	0.667													8	45					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1086331	1086331	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1086331G>A	uc001lsx.1	+	23	3067	c.3040G>A	c.(3040-3042)GAG>AAG	p.E1014K		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1014	VWFD 3.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GGTGAGCAGCGAGCTGGACTT	0.647													11	15					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1092112	1092112	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1092112G>A	uc001lsx.1	+	30	3958	c.3931G>A	c.(3931-3933)GAG>AAG	p.E1311K		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1311						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CTGGATCAATGAGGACCACCC	0.592													10	17					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1092130	1092130	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1092130G>A	uc001lsx.1	+	30	3976	c.3949G>A	c.(3949-3951)GGC>AGC	p.G1317S		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1317						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CCCCAGCAGTGGCAGCGACGA	0.592													9	21					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1095344	1095344	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1095344C>T	uc001lsx.1	+	35	13277	c.13250C>T	c.(13249-13251)CCT>CTT	p.P4417L		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4417						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GACTTTGATCCTCCCAGACAG	0.682													8	27					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1096345	1096345	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1096345G>A	uc001lsx.1	+	37	13483	c.13456G>A	c.(13456-13458)GAC>AAC	p.D4486N		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4486	VWFD 4.	Cleavage; by autolysis; in vitro.				inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GGGCTGGGGCGACCCGCACTA	0.662													10	38					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1103314	1103314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1103314C>T	uc001lsx.1	+	49	15177	c.15150C>T	c.(15148-15150)ATC>ATT	p.I5050I		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	5050						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCATTTGCATCCCGGTGAGTT	0.602													5	56					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1104238	1104238	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1104238C>T	uc001lsx.1	+	52	15542	c.15515C>T	c.(15514-15516)TCC>TTC	p.S5172F		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	5172						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCCCGGCGCTCCCCTAGGCAT	0.706													4	21					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1162237	1162237	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1162237C>T	uc009ycr.1	+	16	1872	c.1746C>T	c.(1744-1746)TTC>TTT	p.F582F		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	573	VWFD 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCGATGACTTCCGGACCCTCA	0.637													8	17					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1247914	1247914	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1247914G>A	uc009ycr.1	+	20	2363	c.2237G>A	c.(2236-2238)GGC>GAC	p.G746D	MUC5B_uc009yct.1_Missense_Mutation_p.G90D|MUC5B_uc001ltb.2_Missense_Mutation_p.G90D|MUC5B_uc001lta.2_5'Flank	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	90	VWFD 1.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACCTTCGACGGCGACGTCTTC	0.647													7	25					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1258188	1258188	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1258188G>A	uc009ycr.1	+	41	5296	c.5170G>A	c.(5170-5172)GAC>AAC	p.D1724N	MUC5B_uc009yct.1_Missense_Mutation_p.D1031N|MUC5B_uc001ltb.2_Missense_Mutation_p.D1034N|MUC5B_uc001lta.2_Missense_Mutation_p.D699N	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1031	VWFD 3.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GAACTTCGACGACAATGCCAT	0.672													3	7					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1262685	1262685	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1262685G>A	uc009ycr.1	+	47	6780	c.6654G>A	c.(6652-6654)GGG>GGA	p.G2218G	MUC5B_uc001ltb.2_Silent_p.G1528G	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1525	7 X Cys-rich subdomain repeats.|Cys-rich subdomain 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AACTTGGAGGGGACGTTGAGT	0.607													11	16					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1268686	1268686	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1268686G>A	uc009ycr.1	+	50	12286	c.12160G>A	c.(12160-12162)GGG>AGG	p.G4054R	MUC5B_uc001ltb.2_Missense_Mutation_p.G3529R	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3526	7 X Cys-rich subdomain repeats.|Thr-rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCCTTCTCCAGGGACGACCAC	0.687													25	101					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1270929	1270929	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1270929G>A	uc009ycr.1	+	51	14364	c.14238G>A	c.(14236-14238)CCG>CCA	p.P4746P	MUC5B_uc001ltb.2_Silent_p.P4276P	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4273	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCTCCACCCCGGGAACAGCTC	0.637													24	154					0	0	1	0	0
LOC338651	338651	broad.mit.edu	37	11	1619373	1619373	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1619373C>T	uc009ycx.1	+	2	1224	c.473C>T	c.(472-474)CCC>CTC	p.P158L	LOC338651_uc001ltt.1_RNA|KRTAP5-2_uc001ltv.2_Silent_p.G36G	NR_021489				SubName: Full=cDNA FLJ30579 fis, clone BRAWH2006989, weakly similar to DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT;          EC=2.7.7.6;												0						AGCCACAGCCCCCACGGCCGG	0.687													33	71					0	0	1	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629548	1629548	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1629548C>T	uc001ltw.1	-	1	146	c.68G>A	c.(67-69)GGC>GAC	p.G23D		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	23						keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		GGAGCCACAGCCCCCACAGCT	0.662													67	142					0	0	1	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642706	1642706	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1642706G>A	uc009ycy.1	-	4	843	c.756C>T	c.(754-756)TCC>TCT	p.S252S		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	266	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		TGCAGCAACTGGACTGGCAGC	0.597													74	144					0	0	1	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651391	1651392	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1651391_1651392GG>AA	uc001lty.2	+	1	359_360	c.321_322GG>AA	c.(319-324)GGGGCC>GGAACC	p.A108T		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	108	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		TGTCCAAGGGGGCCTGTGGCTC	0.688													53	111					0	0	1	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651679	1651679	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1651679C>T	uc001lty.2	+	1	647	c.609C>T	c.(607-609)AGC>AGT	p.S203S		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	203	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AGCCCTGTAGCTGCTTCTCAG	0.592													57	178					0	0	1	0	0
CTSD	1509	broad.mit.edu	37	11	1775232	1775232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1775232G>A	uc001luc.1	-	7	1097	c.964C>T	c.(964-966)CAG>TAG	p.Q322*	CTSD_uc009yda.1_RNA	NM_001909	NP_001900	P07339	CATD_HUMAN	cathepsin D preproprotein	322					cell death|proteolysis	extracellular space|lysosome|melanosome	aspartic-type endopeptidase activity				0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACCTCGCCCTGAATCAGCGGC	0.582													9	10					0	0	1	0	0
SYT8	90019	broad.mit.edu	37	11	1856416	1856416	+	Silent	SNP	C	T	T	rs144532203	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1856416C>T	uc001lue.1	+	2	251	c.123C>T	c.(121-123)GTC>GTT	p.V41V	SYT8_uc010qxb.1_Silent_p.V27V|SYT8_uc001lud.2_Silent_p.V41V|SYT8_uc001luf.1_Silent_p.V27V|SYT8_uc009ydb.1_Silent_p.V27V	NM_138567	NP_612634	Q8NBV8	SYT8_HUMAN	synaptotagmin VIII	41	Extracellular (Potential).					acrosomal vesicle|integral to membrane|plasma membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CAGACCTTGTCGCCGGGACCC	0.622													26	46					0	0	1	0	0
TNNI2	7136	broad.mit.edu	37	11	1862398	1862398	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1862398G>A	uc010qxe.1	+	5	436	c.414G>A	c.(412-414)AGG>AGA	p.R138R	TNNI2_uc010qxc.1_Silent_p.R136R|TNNI2_uc010qxd.1_Silent_p.R136R	NM_001145841	NP_001139313	P48788	TNNI2_HUMAN	fast-twitch skeletal muscle troponin I isoform	138					muscle filament sliding|positive regulation of transcription, DNA-dependent|skeletal muscle contraction	cytosol|nucleus|troponin complex	actin binding|troponin T binding				0		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		TGGACCTGAGGGCCAACCTGA	0.647													19	29					0	0	1	0	0
TNNI2	7136	broad.mit.edu	37	11	1862727	1862727	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1862727C>T	uc010qxe.1	+	6	517	c.495C>T	c.(493-495)ATC>ATT	p.I165I	TNNI2_uc010qxc.1_Silent_p.I163I|TNNI2_uc010qxd.1_Silent_p.I163I	NM_001145841	NP_001139313	P48788	TNNI2_HUMAN	fast-twitch skeletal muscle troponin I isoform	165					muscle filament sliding|positive regulation of transcription, DNA-dependent|skeletal muscle contraction	cytosol|nucleus|troponin complex	actin binding|troponin T binding				0		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGAAGAACATCGAGGAGAAGT	0.642													19	53					0	0	1	0	0
TNNT3	7140	broad.mit.edu	37	11	1955049	1955049	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:1955049C>T	uc001luu.3	+	10	482	c.270C>T	c.(268-270)GTC>GTT	p.V90V	TNNT3_uc001lun.2_Intron|TNNT3_uc001luw.3_Silent_p.V82V|TNNT3_uc001luo.3_Silent_p.V82V|TNNT3_uc001lup.3_Silent_p.V88V|TNNT3_uc001luq.3_Silent_p.V82V|TNNT3_uc001lur.2_Silent_p.V82V|TNNT3_uc010qxf.1_Silent_p.V88V|TNNT3_uc010qxg.1_Silent_p.V22V	NM_006757	NP_006748	P45378	TNNT3_HUMAN	troponin T3, skeletal, fast isoform 1	101					muscle filament sliding|regulation of ATPase activity|regulation of striated muscle contraction|skeletal muscle contraction	cytosol|troponin complex	calcium-dependent protein binding|tropomyosin binding|troponin C binding|troponin I binding			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00253)|Lung(200;0.0333)|LUSC - Lung squamous cell carcinoma(625;0.0826)		AGGAGCTGGTCGCTCTCAAAG	0.597													18	68					0	0	1	0	0
H19	283120	broad.mit.edu	37	11	2017313	2017313	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2017313C>T	uc001lvc.1	-	3	1558	c.940G>A	c.(940-942)GAA>AAA	p.E314K	H19_uc001luz.1_RNA|H19_uc001lva.3_RNA|H19_uc001lvd.2_RNA|H19_uc001lve.2_RNA|H19_uc001lvb.1_RNA					SubName: Full=cDNA FLJ32212 fis, clone PLACE6003399, weakly similar to SPIDROIN 1;												0						CCTCACCTTTCATGTTGTGGG	0.612									Beckwith-Wiedemann_syndrome				6	14					0	0	1	0	0
INS-IGF2	723961	broad.mit.edu	37	11	2170415	2170415	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2170415G>A	uc001lvm.2	-	3	407	c.348C>T	c.(346-348)TCC>TCT	p.S116S	IGF2_uc001lvh.2_5'UTR|INS-IGF2_uc001lvi.2_RNA	NM_001042376	NP_001035835	Q1WM24	Q1WM24_HUMAN	insulin- insulin-like growth factor 2	116					glucose metabolic process	extracellular region	hormone activity				0		all_epithelial(84;0.00018)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;0.00256)|LUSC - Lung squamous cell carcinoma(625;0.0832)|Lung(200;0.156)		AGAGGACCGGGGAGTCACTGG	0.602													45	94					0	0	1	0	0
TH	7054	broad.mit.edu	37	11	2191098	2191098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2191098G>A	uc001lvq.2	-	3	206	c.187C>T	c.(187-189)CCG>TCG	p.P63S	TH_uc001lvp.2_Missense_Mutation_p.P59S|TH_uc001lvr.2_Missense_Mutation_p.P32S|TH_uc010qxj.1_Missense_Mutation_p.P36S|TH_uc001lvs.2_Missense_Mutation_p.P32S|TH_uc001lvt.2_Missense_Mutation_p.P36S|TH_uc009ydh.1_5'Flank	NM_199292	NP_954986	P07101	TY3H_HUMAN	tyrosine hydroxylase isoform a	63					dopamine biosynthetic process from tyrosine|embryonic camera-type eye morphogenesis|epinephrine biosynthetic process|eye photoreceptor cell development|heart morphogenesis|hormone biosynthetic process|learning|locomotory behavior|memory|neurotransmitter biosynthetic process|neurotransmitter secretion|norepinephrine biosynthetic process|pigmentation|regulation of heart contraction|response to ethanol|response to hypoxia|synaptic transmission, dopaminergic|visual perception	cytosol|internal side of plasma membrane|melanosome membrane|nucleus|perikaryon|smooth endoplasmic reticulum	protein binding|tyrosine 3-monooxygenase activity				0		all_epithelial(84;1.46e-23)|Lung NSC(207;4.44e-11)|all_lung(207;1.11e-09)|Ovarian(85;1.78e-06)|Breast(177;1.78e-05)|Medulloblastoma(188;0.0208)|all_neural(188;0.0416)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;8.45e-09)|Lung(200;0.000152)|LUSC - Lung squamous cell carcinoma(625;0.00154)	L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Metyrosine(DB00765)|Tetrahydrobiopterin(DB00360)	ATGAACCGCGGGGACTGTGGG	0.716													4	12					0	0	1	0	0
TH	7054	broad.mit.edu	37	11	2193006	2193006	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2193006G>A	uc001lvq.2	-	1	30	c.11C>T	c.(10-12)CCC>CTC	p.P4L	TH_uc001lvp.2_Missense_Mutation_p.P4L|TH_uc001lvr.2_Missense_Mutation_p.P4L|TH_uc010qxj.1_Missense_Mutation_p.P4L|TH_uc001lvs.2_Missense_Mutation_p.P4L|TH_uc001lvt.2_Missense_Mutation_p.P4L	NM_199292	NP_954986	P07101	TY3H_HUMAN	tyrosine hydroxylase isoform a	4					dopamine biosynthetic process from tyrosine|embryonic camera-type eye morphogenesis|epinephrine biosynthetic process|eye photoreceptor cell development|heart morphogenesis|hormone biosynthetic process|learning|locomotory behavior|memory|neurotransmitter biosynthetic process|neurotransmitter secretion|norepinephrine biosynthetic process|pigmentation|regulation of heart contraction|response to ethanol|response to hypoxia|synaptic transmission, dopaminergic|visual perception	cytosol|internal side of plasma membrane|melanosome membrane|nucleus|perikaryon|smooth endoplasmic reticulum	protein binding|tyrosine 3-monooxygenase activity				0		all_epithelial(84;1.46e-23)|Lung NSC(207;4.44e-11)|all_lung(207;1.11e-09)|Ovarian(85;1.78e-06)|Breast(177;1.78e-05)|Medulloblastoma(188;0.0208)|all_neural(188;0.0416)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;8.45e-09)|Lung(200;0.000152)|LUSC - Lung squamous cell carcinoma(625;0.00154)	L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Metyrosine(DB00765)|Tetrahydrobiopterin(DB00360)	GGTGGCGTCGGGGGTGGGCAT	0.662													16	35					0	0	1	0	0
TSPAN32	10077	broad.mit.edu	37	11	2334931	2334931	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2334931G>A	uc001lvy.1	+	5	539	c.402G>A	c.(400-402)GCG>GCA	p.A134A	TSPAN32_uc001lvx.1_Silent_p.A193A|TSPAN32_uc009ydk.1_Silent_p.A144A|TSPAN32_uc010qxk.1_Silent_p.A169A|TSPAN32_uc009ydl.1_RNA|TSPAN32_uc001lvz.1_Silent_p.A104A|TSPAN32_uc001lwb.1_Silent_p.A104A|TSPAN32_uc001lwc.1_Silent_p.A79A|TSPAN32_uc001lwd.1_5'Flank	NM_139022	NP_620591	Q96QS1	TSN32_HUMAN	tumor-suppressing subtransferable candidate 6	134					cell-cell signaling	integral to membrane				central_nervous_system(1)	1		all_epithelial(84;4.89e-05)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.00791)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.000533)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		ATGAGCAGGCGATGAAAGGTA	0.662													4	7					0	0	1	0	0
TSPAN32	10077	broad.mit.edu	37	11	2335756	2335756	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2335756G>A	uc001lvy.1	+	6	635	c.498G>A	c.(496-498)GGG>GGA	p.G166G	TSPAN32_uc001lvx.1_Missense_Mutation_p.E210K|TSPAN32_uc009ydk.1_Silent_p.G176G|TSPAN32_uc010qxk.1_Silent_p.G201G|TSPAN32_uc009ydl.1_RNA|TSPAN32_uc001lvz.1_Silent_p.G136G|TSPAN32_uc001lwb.1_Silent_p.G136G|TSPAN32_uc001lwc.1_Silent_p.G111G|TSPAN32_uc001lwd.1_5'Flank	NM_139022	NP_620591	Q96QS1	TSN32_HUMAN	tumor-suppressing subtransferable candidate 6	166					cell-cell signaling	integral to membrane				central_nervous_system(1)	1		all_epithelial(84;4.89e-05)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.00791)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.000533)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		GCCGTCTGGGGAGCACAGAGG	0.642													9	13					0	0	1	0	0
CD81	975	broad.mit.edu	37	11	2415372	2415372	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2415372T>G	uc001lwf.1	+	3	462	c.229T>G	c.(229-231)TTC>GTC	p.F77V	CD81_uc001lwg.1_Missense_Mutation_p.F70V|CD81_uc001lwh.1_5'Flank	NM_004356	NP_004347	P60033	CD81_HUMAN	CD81 antigen	77	Helical; (Potential).				activation of MAPK activity|cell proliferation|phosphatidylinositol biosynthetic process|positive regulation of 1-phosphatidylinositol 4-kinase activity|positive regulation of cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization|regulation of immune response|virion attachment, binding of host cell surface receptor	integral to plasma membrane	protein binding				0		all_epithelial(84;0.000161)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.0137)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.000338)|LUSC - Lung squamous cell carcinoma(625;0.191)		GTTCGTTGGCTTCCTGGGCTG	0.662													18	47					0	0	1	0	0
CD81	975	broad.mit.edu	37	11	2416230	2416230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2416230C>T	uc001lwf.1	+	4	541	c.308C>T	c.(307-309)GCC>GTC	p.A103V	CD81_uc001lwg.1_Missense_Mutation_p.A96V|CD81_uc001lwh.1_5'Flank	NM_004356	NP_004347	P60033	CD81_HUMAN	CD81 antigen	103	Helical; (Potential).				activation of MAPK activity|cell proliferation|phosphatidylinositol biosynthetic process|positive regulation of 1-phosphatidylinositol 4-kinase activity|positive regulation of cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization|regulation of immune response|virion attachment, binding of host cell surface receptor	integral to plasma membrane	protein binding				0		all_epithelial(84;0.000161)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.0137)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.000338)|LUSC - Lung squamous cell carcinoma(625;0.191)		ATCCTGTTTGCCTGTGAGGTG	0.662													33	60					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2426252	2426252	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2426252C>T	uc001lwm.3	-	24	3422	c.3413G>A	c.(3412-3414)GGA>GAA	p.G1138E	TRPM5_uc010qxl.1_Missense_Mutation_p.G1146E|TRPM5_uc009ydn.2_Missense_Mutation_p.G1140E	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	1138	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CAGCTGGCTTCCCTCGCCACA	0.662													17	26					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2432910	2432910	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2432910G>A	uc001lwm.3	-	17	2571	c.2562C>T	c.(2560-2562)GCC>GCT	p.A854A	TRPM5_uc010qxl.1_Silent_p.A854A|TRPM5_uc009ydn.2_Silent_p.A856A	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	854	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		GCTTGTGTATGGCAAAGATAT	0.637													35	64					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2436207	2436207	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2436207G>A	uc001lwm.3	-	10	1559	c.1550C>T	c.(1549-1551)CCC>CTC	p.P517L	TRPM5_uc010qxl.1_Missense_Mutation_p.P517L|TRPM5_uc009ydn.2_Missense_Mutation_p.P519L	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	517	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		GTCCCGCCAGGGGTTCTCGCT	0.706													7	21					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2437145	2437145	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2437145C>T	uc001lwm.3	-	8	1128	c.1119G>A	c.(1117-1119)GTG>GTA	p.V373V	TRPM5_uc010qxl.1_Silent_p.V373V|TRPM5_uc009ydn.2_Silent_p.V375V	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	373	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCTTCCACTCCACGTCCCCAT	0.652													3	8					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2444192	2444192	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2444192C>T	uc001lwm.3	-	1	84	c.75G>A	c.(73-75)AGG>AGA	p.R25R	TRPM5_uc010qxl.1_Silent_p.R25R|TRPM5_uc009ydn.2_Silent_p.R25R	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	25	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGACCTCGCCCCTGTGCAAGC	0.652													7	66					0	0	1	0	0
KCNQ1	3784	broad.mit.edu	37	11	2592604	2592604	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2592604G>A	uc001lwn.2	+	4	762	c.654G>A	c.(652-654)AAG>AAA	p.K218K	KCNQ1_uc009ydp.1_Intron|KCNQ1_uc001lwo.2_Silent_p.K91K	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	218	Extracellular (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	TGGGCTCCAAGGGGCAGGTGT	0.682													24	60					0	0	1	0	0
KCNQ1	3784	broad.mit.edu	37	11	2608837	2608837	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2608837C>T	uc001lwn.2	+	9	1274	c.1166C>T	c.(1165-1167)TCC>TTC	p.S389F	KCNQ1_uc009ydp.1_Missense_Mutation_p.S173F|KCNQ1_uc001lwo.2_Missense_Mutation_p.S262F	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	389	Cytoplasmic (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	AACCCCGACTCCTCCACCTGG	0.642													46	99					0	0	1	0	0
KCNQ1	3784	broad.mit.edu	37	11	2610032	2610032	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:2610032C>T	uc001lwn.2	+	10	1449	c.1341C>T	c.(1339-1341)CCC>CCT	p.P447P	KCNQ1_uc009ydp.1_Silent_p.P231P|KCNQ1_uc001lwo.2_Silent_p.P320P	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	447	Cytoplasmic (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	CGTGCGACCCCCCAGAAGAGC	0.552													9	31					0	0	1	0	0
CARS	833	broad.mit.edu	37	11	3040465	3040465	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3040465G>A	uc001lxh.2	-	11	1124	c.1050C>T	c.(1048-1050)GCC>GCT	p.A350A	CARS_uc001lxe.2_Silent_p.A340A|CARS_uc001lxf.2_Silent_p.A433A|CARS_uc001lxg.2_Silent_p.A350A|CARS_uc010qxo.1_Silent_p.A433A|CARS_uc010qxp.1_Silent_p.A363A	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	350					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	TGCCTGCCATGGCCGAGCACT	0.597			T	ALK	ALCL								34	128					0	0	1	0	0
OSBPL5	114879	broad.mit.edu	37	11	3122903	3122903	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3122903G>A	uc001lxk.2	-	13	1610	c.1452C>T	c.(1450-1452)GCC>GCT	p.A484A	OSBPL5_uc010qxq.1_Silent_p.A395A|OSBPL5_uc009ydw.2_Silent_p.A416A|OSBPL5_uc001lxl.2_Silent_p.A416A|OSBPL5_uc009ydx.2_Silent_p.A508A	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	484					cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		TGACGTGGAAGGCAGACACGG	0.637													17	41					0	0	1	0	0
OSBPL5	114879	broad.mit.edu	37	11	3140824	3140824	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3140824G>A	uc001lxk.2	-	7	802	c.644C>T	c.(643-645)CCC>CTC	p.P215L	OSBPL5_uc010qxq.1_Missense_Mutation_p.P126L|OSBPL5_uc009ydw.2_Missense_Mutation_p.P147L|OSBPL5_uc001lxl.2_Missense_Mutation_p.P147L|OSBPL5_uc009ydx.2_Missense_Mutation_p.P239L	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	215	PH.				cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		GCTGGGCAGGGGCTGTGTGAT	0.642													32	58					0	0	1	0	0
OSBPL5	114879	broad.mit.edu	37	11	3147762	3147762	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3147762G>A	uc001lxk.2	-	3	318	c.160C>T	c.(160-162)CCG>TCG	p.P54S	OSBPL5_uc010qxq.1_Missense_Mutation_p.P6S|OSBPL5_uc009ydw.2_Missense_Mutation_p.P54S|OSBPL5_uc001lxl.2_Missense_Mutation_p.P54S|OSBPL5_uc009ydx.2_Missense_Mutation_p.P78S|OSBPL5_uc001lxm.1_RNA	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	54					cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		GGCAGCGACGGGCCGTTGGGC	0.657													9	23					0	0	1	0	0
ART5	116969	broad.mit.edu	37	11	3661201	3661201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3661201C>T	uc001lyb.1	-	2	851	c.458G>A	c.(457-459)GGA>GAA	p.G153E	ART5_uc001lyc.1_Missense_Mutation_p.G153E|ART5_uc001lyd.2_Missense_Mutation_p.G153E|ART5_uc009yea.2_Missense_Mutation_p.G153E	NM_053017	NP_443750	Q96L15	NAR5_HUMAN	ADP-ribosyltransferase 5 precursor	153						extracellular region	NAD(P)+-protein-arginine ADP-ribosyltransferase activity			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0336)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTCCCCAGGTCCCCTGCTGCA	0.637													26	38					0	0	1	0	0
ART1	417	broad.mit.edu	37	11	3681174	3681174	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3681174G>A	uc001lye.1	+	3	526	c.425G>A	c.(424-426)CGG>CAG	p.R142Q	ART1_uc009yeb.1_Missense_Mutation_p.R142Q	NM_004314	NP_004305	P52961	NAR1_HUMAN	ADP-ribosyltransferase 1 precursor	142					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane|sarcoplasmic reticulum membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity				0		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0351)|LUSC - Lung squamous cell carcinoma(625;0.195)	Becaplermin(DB00102)	GGCCGCTCCCGGGCCCACTAC	0.667													26	49					0	0	1	0	0
ART1	417	broad.mit.edu	37	11	3681454	3681454	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3681454C>T	uc001lye.1	+	3	806	c.705C>T	c.(703-705)TTC>TTT	p.F235F	ART1_uc009yeb.1_Silent_p.F235F	NM_004314	NP_004305	P52961	NAR1_HUMAN	ADP-ribosyltransferase 1 precursor	235					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane|sarcoplasmic reticulum membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity				0		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0351)|LUSC - Lung squamous cell carcinoma(625;0.195)	Becaplermin(DB00102)	ACTCCTTCTTCCCTGGAGAGG	0.612													34	64					0	0	1	0	0
ART1	417	broad.mit.edu	37	11	3682615	3682615	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3682615G>A	uc001lye.1	+	4	959	c.858G>A	c.(856-858)AAG>AAA	p.K286K		NM_004314	NP_004305	P52961	NAR1_HUMAN	ADP-ribosyltransferase 1 precursor	286					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane|sarcoplasmic reticulum membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity				0		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0351)|LUSC - Lung squamous cell carcinoma(625;0.195)	Becaplermin(DB00102)	AGAAGTGCAAGTCTGGGCCTT	0.348													26	57					0	0	1	0	0
NUP98	4928	broad.mit.edu	37	11	3712680	3712680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3712680G>A	uc001lyh.2	-	28	4642	c.4351C>T	c.(4351-4353)CCT>TCT	p.P1451S	NUP98_uc001lyi.2_Missense_Mutation_p.P1451S|NUP98_uc001lyg.2_Missense_Mutation_p.P416S	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1468					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		AGATACGAAGGAAGTGGGGAG	0.428			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								11	57					0	0	1	0	0
NUP98	4928	broad.mit.edu	37	11	3721927	3721927	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3721927G>A	uc001lyh.2	-	24	3946	c.3655C>T	c.(3655-3657)CTC>TTC	p.L1219F	NUP98_uc001lyi.2_Missense_Mutation_p.L1219F|NUP98_uc001lyg.2_Missense_Mutation_p.L184F	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1236					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		GGGACAATGAGAGGACACAGT	0.423			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								14	57					0	0	1	0	0
NUP98	4928	broad.mit.edu	37	11	3723942	3723942	+	Missense_Mutation	SNP	G	C	C	rs146515319	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:3723942G>C	uc001lyh.2	-	23	3554	c.3263C>G	c.(3262-3264)CCG>CGG	p.P1088R	NUP98_uc001lyi.2_Missense_Mutation_p.P1088R|NUP98_uc001lyg.2_Intron	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1105					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		TGTTTTCAACGGAACCTCAGG	0.512			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								14	41					0	0	1	0	0
STIM1	6786	broad.mit.edu	37	11	4107730	4107730	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4107730C>T	uc001lyv.2	+	11	2066	c.1498C>T	c.(1498-1500)CGG>TGG	p.R500W	STIM1_uc009yef.2_Missense_Mutation_p.R500W|STIM1_uc009yeg.2_Missense_Mutation_p.R327W	NM_003156	NP_003147	Q13586	STIM1_HUMAN	stromal interaction molecule 1 precursor	500	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|detection of calcium ion|platelet activation	integral to endoplasmic reticulum membrane|integral to plasma membrane|microtubule	calcium ion binding|microtubule plus-end binding			pancreas(1)	1		Breast(177;0.00159)|Medulloblastoma(188;0.00258)|all_neural(188;0.0233)		BRCA - Breast invasive adenocarcinoma(625;0.114)|LUSC - Lung squamous cell carcinoma(625;0.141)		GAGCAGTGTTCGGCAGCGCCT	0.592													11	42					0	0	1	0	0
OR52B4	143496	broad.mit.edu	37	11	4389379	4389379	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4389379G>A	uc010qye.1	-	1	147	c.147C>T	c.(145-147)TTC>TTT	p.F49F		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGAGGATAATGAAGATGAGCA	0.532													13	28					0	0	1	0	0
OR52B4	143496	broad.mit.edu	37	11	4389390	4389390	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4389390G>A	uc010qye.1	-	1	136	c.136C>T	c.(136-138)CTG>TTG	p.L46L		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAGATGAGCAGGCTGTTCCCA	0.527													13	27					0	0	1	0	0
OR52B4	143496	broad.mit.edu	37	11	4389397	4389397	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4389397C>T	uc010qye.1	-	1	129	c.129G>A	c.(127-129)GGG>GGA	p.G43G		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCAGGCTGTTCCCAAGAAGGG	0.527													11	29					0	0	1	0	0
OR52B4	143496	broad.mit.edu	37	11	4389456	4389456	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4389456C>T	uc010qye.1	-	1	70	c.70G>A	c.(70-72)GAC>AAC	p.D24N		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGTGCTGGTCCTGTAGGCCA	0.517													19	22					0	0	1	0	0
OR52M1	119772	broad.mit.edu	37	11	4566681	4566681	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4566681C>T	uc010qyf.1	+	1	261	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGGAATCTTCTGGTTCGGTG	0.512													23	78					0	0	1	0	0
OR52M1	119772	broad.mit.edu	37	11	4567312	4567312	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4567312C>T	uc010qyf.1	+	1	892	c.892C>T	c.(892-894)CGC>TGC	p.R298C		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTATGCTGTTCGCACCAAGCA	0.448													32	53					0	0	1	0	0
OR52I2	143502	broad.mit.edu	37	11	4608361	4608361	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4608361G>A	uc010qyh.1	+	1	319	c.319G>A	c.(319-321)GTG>ATG	p.V107M		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	107	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCCTCCTCGGTGGTACCCAA	0.488													30	269					0	0	1	0	0
OR52I2	143502	broad.mit.edu	37	11	4608595	4608595	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4608595G>A	uc010qyh.1	+	1	553	c.553G>A	c.(553-555)GCC>ACC	p.A185T		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	185	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGCTATCATAGCCATAACTCC	0.493													37	87					0	0	1	0	0
OR52I1	390037	broad.mit.edu	37	11	4615509	4615509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4615509G>A	uc010qyi.1	+	1	241	c.241G>A	c.(241-243)GTG>ATG	p.V81M		NM_001005169	NP_001005169	Q8NGK6	O52I1_HUMAN	olfactory receptor, family 52, subfamily I,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;7.98e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCCTCCTCCGTGGTACCCAA	0.502													30	176					0	0	1	0	0
OR51D1	390038	broad.mit.edu	37	11	4661107	4661107	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4661107C>T	uc010qyk.1	+	1	87	c.87C>T	c.(85-87)ATC>ATT	p.I29I		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	29	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGTGGGTATCCCTGGCCTGG	0.507													38	95					0	0	1	0	0
OR51D1	390038	broad.mit.edu	37	11	4661207	4661207	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4661207C>T	uc010qyk.1	+	1	187	c.187C>T	c.(187-189)CGT>TGT	p.R63C		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	63	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCTCATCATTCGTGTGGAGAG	0.542													12	72					0	0	1	0	0
OR51E1	143503	broad.mit.edu	37	11	4673781	4673781	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4673781G>A	uc001lzi.3	+	2	169	c.25G>A	c.(25-27)GAA>AAA	p.E9K		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAATGGCAATGAATCCAGTGC	0.488													44	116					0	0	1	0	0
OR51E1	143503	broad.mit.edu	37	11	4674183	4674183	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4674183C>T	uc001lzi.3	+	2	571	c.427C>T	c.(427-429)CGT>TGT	p.R143C		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		TACGTTGCCTCGTGTCACCAA	0.567													33	72					0	0	1	0	0
OR51E1	143503	broad.mit.edu	37	11	4674254	4674254	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4674254C>T	uc001lzi.3	+	2	642	c.498C>T	c.(496-498)ATC>ATT	p.I166I		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTGTCTTCATCAAGCAGCTGC	0.552													41	127					0	0	1	0	0
OR51E1	143503	broad.mit.edu	37	11	4674333	4674333	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4674333G>A	uc001lzi.3	+	2	721	c.577G>A	c.(577-579)GAT>AAT	p.D193N		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTGGCCTGTGATGATATCCG	0.498													73	125					0	0	1	0	0
OR51E2	81285	broad.mit.edu	37	11	4703087	4703087	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4703087G>A	uc001lzk.2	-	2	1099	c.855C>T	c.(853-855)GTC>GTT	p.V285V		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		TGGGATTGATGACAGGAGGCA	0.512													22	47					0	0	1	0	0
OR51E2	81285	broad.mit.edu	37	11	4703277	4703277	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4703277C>T	uc001lzk.2	-	2	909	c.665G>A	c.(664-666)CGA>CAA	p.R222Q		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CAGAACCGTTCGTATTATCAG	0.488													29	59					0	0	1	0	0
OR51E2	81285	broad.mit.edu	37	11	4703417	4703417	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4703417G>A	uc001lzk.2	-	2	769	c.525C>T	c.(523-525)CAC>CAT	p.H175H		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CACAATAGGAGTGCGAGAGGA	0.532													28	70					0	0	1	0	0
OR51E2	81285	broad.mit.edu	37	11	4703603	4703603	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4703603G>A	uc001lzk.2	-	2	583	c.339C>T	c.(337-339)ATC>ATT	p.I113I		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		TGGCCAGCAGGATGGTGGATT	0.517													15	45					0	0	1	0	0
OR51E2	81285	broad.mit.edu	37	11	4703632	4703632	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4703632G>A	uc001lzk.2	-	2	554	c.310C>T	c.(310-312)CAT>TAT	p.H104Y		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		GAGAGGGCATGAATAAAGAAC	0.517													17	46					0	0	1	0	0
OR51E2	81285	broad.mit.edu	37	11	4703723	4703723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4703723G>A	uc001lzk.2	-	2	463	c.219C>T	c.(217-219)TCC>TCT	p.S73S		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		TGGTGGATGTGGATAAGGCCA	0.502													24	70					0	0	1	0	0
OR51E2	81285	broad.mit.edu	37	11	4703934	4703934	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4703934G>A	uc001lzk.2	-	2	252	c.8C>T	c.(7-9)TCC>TTC	p.S3F		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.S3S(1)		lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		GAAGTTGCAGGAACTCATAGC	0.507													17	31					0	0	1	0	0
OR51F1	256892	broad.mit.edu	37	11	4790452	4790452	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4790452G>A	uc010qyl.1	-	1	696	c.696C>T	c.(694-696)TCC>TCT	p.S232S		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	232						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		ATTCTTCAGGGGAGGCAATTC	0.458													54	108					0	0	1	0	0
OR51F1	256892	broad.mit.edu	37	11	4790832	4790832	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4790832G>A	uc010qyl.1	-	1	316	c.316C>T	c.(316-318)CTT>TTT	p.L106F		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	106						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AATCCATGAAGAAAAAACATC	0.443													11	41					0	0	1	0	0
OR52R1	119695	broad.mit.edu	37	11	4825119	4825119	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4825119G>A	uc010qym.1	-	1	729	c.729C>T	c.(727-729)TTC>TTT	p.F243F		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TAGACACCATGAAGCAGAAGG	0.547													12	78					0	0	1	0	0
OR52R1	119695	broad.mit.edu	37	11	4825276	4825276	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4825276G>A	uc010qym.1	-	1	572	c.572C>T	c.(571-573)TCT>TTT	p.S191F		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGACTCCACAGAAGAAAAGGC	0.522													27	98					0	0	1	0	0
OR52R1	119695	broad.mit.edu	37	11	4825532	4825532	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4825532G>A	uc010qym.1	-	1	316	c.316C>T	c.(316-318)CAG>TAG	p.Q106*		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	27	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATCCACAACTGGAAACTCTCC	0.498													13	43					0	0	1	0	0
OR51F2	119694	broad.mit.edu	37	11	4842683	4842683	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4842683C>T	uc010qyn.1	+	1	68	c.68C>T	c.(67-69)CCT>CTT	p.P23L		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATTGCTGAGCCTCTGATCTTC	0.438													115	272					0	0	1	0	0
OR51S1	119692	broad.mit.edu	37	11	4869840	4869840	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4869840G>C	uc010qyo.1	-	1	599	c.599C>G	c.(598-600)GCT>GGT	p.A200G		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	200	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCACCCCAAGCTTCTGGGCA	0.532													32	91					0	0	1	0	0
OR51S1	119692	broad.mit.edu	37	11	4870051	4870051	+	Missense_Mutation	SNP	G	A	A	rs139421041		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4870051G>A	uc010qyo.1	-	1	388	c.388C>T	c.(388-390)CGG>TGG	p.R130W		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	130	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R130R(1)		skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCAGTGCCCGATCAATGGAC	0.522													45	99					0	0	1	0	0
OR51S1	119692	broad.mit.edu	37	11	4870120	4870120	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4870120G>A	uc010qyo.1	-	1	319	c.319C>T	c.(319-321)CTA>TTA	p.L107L		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	107	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCATCTGTAGAAGGCAGGCT	0.542													21	95					0	0	1	0	0
OR51S1	119692	broad.mit.edu	37	11	4870387	4870387	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4870387G>A	uc010qyo.1	-	1	52	c.52C>T	c.(52-54)CCC>TCC	p.P18S		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAGAAGGTGGGGGCCATTGAA	0.507													36	77					0	0	1	0	0
OR51T1	401665	broad.mit.edu	37	11	4903121	4903121	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4903121C>T	uc010qyp.1	+	1	73	c.73C>T	c.(73-75)CAA>TAA	p.Q25*		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	Error:Variant_position_missing_in_Q8NGJ9_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCAGTGTCTTCAACCAACCAT	0.323													21	55					0	0	1	0	0
OR51T1	401665	broad.mit.edu	37	11	4903186	4903186	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4903186C>T	uc010qyp.1	+	1	138	c.138C>T	c.(136-138)TTC>TTT	p.F46F		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCACTGCATTCCCTGGGCTGG	0.423													37	84					0	0	1	0	0
OR51A7	119687	broad.mit.edu	37	11	4928848	4928848	+	Silent	SNP	G	A	A	rs146129201		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4928848G>A	uc010qyq.1	+	1	249	c.249G>A	c.(247-249)AGG>AGA	p.R83R		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCATGTTGAGGGTCTTCTTGT	0.468													35	125					0	0	1	0	0
OR51A7	119687	broad.mit.edu	37	11	4929324	4929324	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4929324C>T	uc010qyq.1	+	1	725	c.725C>T	c.(724-726)TCC>TTC	p.S242F		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCTGTGTCTCCCACATCTGT	0.468													71	166					0	0	1	0	0
OR51G2	81282	broad.mit.edu	37	11	4935978	4935978	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4935978C>T	uc001lzr.1	-	1	916	c.916G>A	c.(916-918)GAT>AAT	p.D306N		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTCACTCGATCCCGGATCTGT	0.468													8	33					0	0	1	0	0
OR51G2	81282	broad.mit.edu	37	11	4936471	4936471	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4936471G>A	uc001lzr.1	-	1	423	c.423C>T	c.(421-423)CTC>CTT	p.L141L		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	141	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTGTGTTGGTGAGAATGGAAA	0.478													12	52					0	0	1	0	0
OR51G2	81282	broad.mit.edu	37	11	4936693	4936693	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4936693G>A	uc001lzr.1	-	1	201	c.201C>T	c.(199-201)TTC>TTT	p.F67F		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCATGGACAGGAAGAGATACA	0.478													18	40					0	0	1	0	0
OR51G2	81282	broad.mit.edu	37	11	4936761	4936761	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4936761G>A	uc001lzr.1	-	1	133	c.133C>T	c.(133-135)CCG>TCG	p.P45S		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGTTGCCCGGGATGGAAACC	0.502													17	79					0	0	1	0	0
OR51G1	79324	broad.mit.edu	37	11	4944978	4944978	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4944978G>A	uc010qyr.1	-	1	592	c.592C>T	c.(592-594)CAC>TAC	p.H198Y		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	198	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCATAGATGTGATTGACAATG	0.532													7	94					0	0	1	0	0
OR51G1	79324	broad.mit.edu	37	11	4945091	4945091	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4945091G>A	uc010qyr.1	-	1	479	c.479C>T	c.(478-480)CCC>CTC	p.P160L		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAATGGCAAGGGGAGGATGAG	0.542													19	46					0	0	1	0	0
OR51G1	79324	broad.mit.edu	37	11	4945447	4945447	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4945447G>A	uc010qyr.1	-	1	123	c.123C>T	c.(121-123)ATC>ATT	p.I41I		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGTTCCCCAAGATAACTGTCA	0.502													18	63					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4967979	4967979	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4967979G>A	uc010qys.1	-	1	352	c.352C>T	c.(352-354)CTG>TTG	p.L118L		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GACATGATCAGGAGGACTGAG	0.443													48	288					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4968016	4968016	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4968016G>A	uc010qys.1	-	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATCCATGAATGAAGAATTCCT	0.443													53	154					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4968027	4968027	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4968027G>A	uc010qys.1	-	1	304	c.304C>T	c.(304-306)CAG>TAG	p.Q102*		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAGAATTCCTGGGCAAAGCAG	0.448													59	140					0	0	1	0	0
OR51A2	401667	broad.mit.edu	37	11	4976080	4976080	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4976080C>T	uc010qyt.1	-	1	864	c.864G>A	c.(862-864)ATG>ATA	p.M288I		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAATTGGTTTCATCAGCGGAG	0.418													38	64					0	0	1	0	0
OR51A2	401667	broad.mit.edu	37	11	4976592	4976592	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:4976592G>A	uc010qyt.1	-	1	352	c.352C>T	c.(352-354)CTG>TTG	p.L118L		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GACATGATCAGGAGGACTGAG	0.448													23	25					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5011051	5011051	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5011051C>T	uc001lzv.2	+	2	291	c.273C>T	c.(271-273)TCC>TCT	p.S91S		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	91					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCGACACCTCCATCTCGCCAG	0.517													20	50					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5011861	5011861	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5011861C>T	uc001lzv.2	+	3	372	c.354C>T	c.(352-354)TCC>TCT	p.S118S		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	118					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGAAGCCATCCGCAGTGAAAG	0.393													34	66					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5013298	5013298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5013298G>A	uc001lzv.2	+	5	718	c.700G>A	c.(700-702)GAC>AAC	p.D234N		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	234					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		CTGGTATCACGACCCTAGAAC	0.488													19	51					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5013342	5013342	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5013342C>T	uc001lzv.2	+	5	762	c.744C>T	c.(742-744)ATC>ATT	p.I248I		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	248					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		TCCAAAGGATCCAGCATTTGT	0.448													24	46					0	0	1	0	0
OR51L1	119682	broad.mit.edu	37	11	5020566	5020566	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5020566G>A	uc010qyu.1	+	1	354	c.354G>A	c.(352-354)CTG>CTA	p.L118L		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGTGTTGCTGGCCATGGCCT	0.498													65	145					0	0	1	0	0
OR51L1	119682	broad.mit.edu	37	11	5020752	5020752	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5020752C>T	uc010qyu.1	+	1	540	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTCACGCCTTCTGTTTGCACC	0.473													21	116					0	0	1	0	0
OR52J3	119679	broad.mit.edu	37	11	5068338	5068338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5068338C>T	uc010qyv.1	+	1	583	c.583C>T	c.(583-585)CGT>TGT	p.R195C		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGAAACATTCGTATCAATGG	0.438													40	113					0	0	1	0	0
OR52J3	119679	broad.mit.edu	37	11	5068408	5068408	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5068408C>T	uc010qyv.1	+	1	653	c.653C>T	c.(652-654)TCG>TTG	p.S218L		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATTGGCATCTCGTATGTTTAC	0.453													66	162					0	0	1	0	0
OR52J3	119679	broad.mit.edu	37	11	5068442	5068442	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5068442C>T	uc010qyv.1	+	1	687	c.687C>T	c.(685-687)CTC>CTT	p.L229L		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCTTCCGCCTCCCATCACATG	0.448													72	143					0	0	1	0	0
OR52E2	119678	broad.mit.edu	37	11	5080338	5080338	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5080338G>A	uc010qyw.1	-	1	520	c.520C>T	c.(520-522)CAT>TAT	p.H174Y		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		GGAATTACATGATTCCCACAG	0.403													12	32					0	0	1	0	0
OR52E2	119678	broad.mit.edu	37	11	5080361	5080361	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5080361A>C	uc010qyw.1	-	1	497	c.497T>G	c.(496-498)TTG>TGG	p.L166W		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		GGGCAACCGCAATATAAGAAG	0.423													7	24					0	0	1	0	0
OR52E2	119678	broad.mit.edu	37	11	5080723	5080723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5080723G>A	uc010qyw.1	-	1	135	c.135C>T	c.(133-135)TTC>TTT	p.F45F		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		GTAGAATAGTGAAGTTCCCTA	0.507													11	57					0	0	1	0	0
OR52A5	390054	broad.mit.edu	37	11	5153219	5153219	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5153219G>A	uc010qyx.1	-	1	654	c.654C>T	c.(652-654)ACC>ACT	p.T218T		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		CATAGGACAAGGTTATAAATA	0.423													36	70					0	0	1	0	0
OR52A5	390054	broad.mit.edu	37	11	5153546	5153546	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5153546G>A	uc010qyx.1	-	1	327	c.327C>T	c.(325-327)TTC>TTT	p.F109F		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		CAATTGCCTGGAATGAGTGAA	0.453													13	47					0	0	1	0	0
OR52A5	390054	broad.mit.edu	37	11	5153554	5153554	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5153554G>A	uc010qyx.1	-	1	319	c.319C>T	c.(319-321)CAC>TAC	p.H107Y		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TGGAATGAGTGAATAAGCCAC	0.448													6	56					0	0	1	0	0
OR52A1	23538	broad.mit.edu	37	11	5172952	5172952	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5172952G>A	uc010qyy.1	-	1	648	c.648C>T	c.(646-648)TTC>TTT	p.F216F		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACAATGTGATGAATGTGAGGT	0.413													48	99					0	0	1	0	0
OR52A1	23538	broad.mit.edu	37	11	5173285	5173285	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5173285G>A	uc010qyy.1	-	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGTGTGGATGAACCACATTT	0.443													11	26					0	0	1	0	0
OR51V1	283111	broad.mit.edu	37	11	5221755	5221755	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5221755C>T	uc010qyz.1	-	1	176	c.176G>A	c.(175-177)TGG>TAG	p.W59*		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	59	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGCTCAGTCCATATCACATG	0.532													27	77					0	0	1	0	0
HBB	3043	broad.mit.edu	37	11	5247821	5247821	+	Missense_Mutation	SNP	G	A	A	rs34692941		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5247821G>A	uc001mae.1	-	2	351	c.301C>T	c.(301-303)CCT>TCT	p.P101S		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	101			P -> L (in Brigham; O(2) affinity up).|P -> R (in New Mexico).		blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	AAGTTCTCAGGATCCACGTGC	0.502									Sickle_Cell_Trait				23	78					0	0	1	0	0
HBB	3043	broad.mit.edu	37	11	5247885	5247885	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5247885C>T	uc001mae.1	-	2	287	c.237G>A	c.(235-237)CTG>CTA	p.L79L		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	79			L -> R (in Quin-hai).		blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	TGAGGTTGTCCAGGTGAGCCA	0.542									Sickle_Cell_Trait				25	109					0	0	1	0	0
HBB	3043	broad.mit.edu	37	11	5247968	5247968	+	Missense_Mutation	SNP	G	A	A	rs63750128		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5247968G>A	uc001mae.1	-	2	204	c.154C>T	c.(154-156)CCT>TCT	p.P52S		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	52			P -> R (in Willamette; O(2) affinity up; unstable).		blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	ACAGCATCAGGAGTGGACAGA	0.537									Sickle_Cell_Trait				37	115					0	0	1	0	0
HBBP1	3044	broad.mit.edu	37	11	5264417	5264417	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5264417G>A	uc001mag.2	-	2	285	c.69C>T	c.(67-69)CTC>CTT	p.L23L		NR_001589				Homo sapiens hemoglobin, beta pseudogene 1 (HBBP1), non-coding RNA.												0						GGTCATCCGTGAGCATAACAG	0.498													7	27					0	0	1	0	0
HBG2	3048	broad.mit.edu	37	11	5275566	5275566	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5275566C>T	uc001mai.1	-	2	708	c.271G>A	c.(271-273)GAA>AAA	p.E91K	HBG2_uc001mak.1_RNA|HBG2_uc001maj.1_Missense_Mutation_p.E91K	NM_000559	NP_000550	P69892	HBG2_HUMAN	A-gamma globin	91					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGTGCAGTTCACTCAGCTGG	0.507													28	130					0	0	1	0	0
HBG2	3048	broad.mit.edu	37	11	5275656	5275656	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5275656C>T	uc001mai.1	-	2	618	c.181G>A	c.(181-183)GTC>ATC	p.V61I	HBG2_uc001mak.1_RNA|HBG2_uc001maj.1_Missense_Mutation_p.V61I	NM_000559	NP_000550	P69892	HBG2_HUMAN	A-gamma globin	61					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTGCCTTGACTTTGGGGTTG	0.537													27	102					0	0	1	0	0
OR51B4	79339	broad.mit.edu	37	11	5322321	5322321	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5322321G>A	uc010qza.1	-	1	856	c.856C>T	c.(856-858)CCT>TCT	p.P286S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAAATGATAGGATTCACGAAT	0.428													13	69					0	0	1	0	0
OR51B4	79339	broad.mit.edu	37	11	5323135	5323135	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5323135G>A	uc010qza.1	-	1	42	c.42C>T	c.(40-42)GGC>GGT	p.G14G	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCCCAAGAAGCCAGTCAGCA	0.463											OREG0003718	type=REGULATORY REGION|Gene=OR51B4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	23	77					0	0	1	0	0
OR51B2	79345	broad.mit.edu	37	11	5344754	5344754	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5344754G>A	uc001mao.1	-	1	829	c.774C>T	c.(772-774)TTC>TTT	p.F258F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	258	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCTGTAAATGAATGTCAAAC	0.413													19	90					0	0	1	0	0
OR51B2	79345	broad.mit.edu	37	11	5344952	5344952	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5344952G>A	uc001mao.1	-	1	631	c.576C>T	c.(574-576)TTC>TTT	p.F192F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAAGTCTATTGAAAGTTATGT	0.363													20	46					0	0	1	0	0
OR51B5	282763	broad.mit.edu	37	11	5363817	5363817	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5363817C>T	uc001map.1	-	1	938	c.938G>A	c.(937-939)TGA>TAA	p.*313*	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	313					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATTGGAGATCAGGTTCCAAT	0.383													7	71					0	0	1	0	0
OR51B5	282763	broad.mit.edu	37	11	5363912	5363912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5363912G>A	uc001map.1	-	1	843	c.843C>T	c.(841-843)TTC>TTT	p.F281F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTAGTGGAGGGAACAGAAAAT	0.378													29	65					0	0	1	0	0
OR51B5	282763	broad.mit.edu	37	11	5364116	5364116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5364116G>A	uc001map.1	-	1	639	c.639C>T	c.(637-639)TTC>TTT	p.F213F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATAGGAGATGAAGATAATCA	0.468													38	83					0	0	1	0	0
OR51B5	282763	broad.mit.edu	37	11	5364297	5364297	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5364297G>A	uc001map.1	-	1	458	c.458C>T	c.(457-459)TCC>TTC	p.S153F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.S153F	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGAACAACGGATACAAATCC	0.443													24	77					0	0	1	0	0
OR51B5	282763	broad.mit.edu	37	11	5364688	5364688	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5364688G>A	uc001map.1	-	1	67	c.67C>T	c.(67-69)CAC>TAC	p.H23Y	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.H23Y	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAAATCCAGTGATGAGCTTCC	0.433													12	43					0	0	1	0	0
OR51M1	390059	broad.mit.edu	37	11	5411015	5411015	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5411015G>A	uc010qzc.1	+	1	387	c.387G>A	c.(385-387)ATG>ATA	p.M129I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	129						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCTCCTCATGATGTCCTTTG	0.488													75	234					0	0	1	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443492	5443492	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5443492G>A	uc010qzd.1	+	1	62	c.62G>A	c.(61-63)GGA>GAA	p.G21E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GACATCCCTGGATTTGAGGCC	0.502													47	156					0	0	1	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443930	5443930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5443930G>A	uc010qzd.1	+	1	500	c.500G>A	c.(499-501)CGA>CAA	p.R167Q	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTACTCAAGCGACTGCCTTTC	0.517													106	226					0	0	1	0	0
OR51Q1	390061	broad.mit.edu	37	11	5444075	5444075	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5444075C>T	uc010qzd.1	+	1	645	c.645C>T	c.(643-645)CTC>CTT	p.L215L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCCTCTGCTCATTGTGATCT	0.493													46	151					0	0	1	0	0
OR51I1	390063	broad.mit.edu	37	11	5462037	5462037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5462037C>T	uc010qze.1	-	1	708	c.708G>A	c.(706-708)CGG>CGA	p.R236R	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	236	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTGCCTTGAGCCGCTGTTCCT	0.478													13	32					0	0	1	0	0
OR51I2	390064	broad.mit.edu	37	11	5474840	5474840	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5474840G>A	uc010qzf.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCCTTGGGGGAAATACAGTG	0.572													28	52					0	0	1	0	0
OR51I2	390064	broad.mit.edu	37	11	5475583	5475583	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5475583C>T	uc010qzf.1	+	1	865	c.865C>T	c.(865-867)CCT>TCT	p.P289S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTGCTCAACCCTCTCATTTA	0.463													48	148					0	0	1	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529496	5529496	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5529496C>T	uc001may.1	-	2	1379	c.1293G>A	c.(1291-1293)GGG>GGA	p.G431G	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	431										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAGAGCTTTTCCCTGCACCAT	0.517													41	81					0	0	1	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529732	5529732	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5529732G>A	uc001may.1	-	2	1143	c.1057C>T	c.(1057-1059)CCC>TCC	p.P353S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	353										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGGACTGGGGGTTCTCGTGT	0.498													46	96					0	0	1	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537083	5537083	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5537083C>T	uc001maz.3	-	1	874	c.589G>A	c.(589-591)GAA>AAA	p.E197K	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	197										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		TCTAGATGTTCTGAAATGAAC	0.493													52	134					0	0	1	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537102	5537102	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5537102G>A	uc001maz.3	-	1	855	c.570C>T	c.(568-570)TTC>TTT	p.F190F	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	190										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		ACTGCCACATGAACTCCATGT	0.473													66	105					0	0	1	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537224	5537225	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5537224_5537225GG>AA	uc001maz.3	-	1	732_733	c.447_448CC>TT	c.(445-450)GCCCAC>GCTTAC	p.H150Y	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	150										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		CCCACAAAGTGGGCCAGTTCCA	0.53													9	94					0	0	1	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537337	5537337	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5537337G>A	uc001maz.3	-	1	620	c.335C>T	c.(334-336)TCC>TTC	p.S112F	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	112										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		GTCCCGGAAGGAATGGGCTAG	0.537													19	70					0	0	1	0	0
OR52H1	390067	broad.mit.edu	37	11	5566086	5566086	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5566086G>A	uc010qzh.1	-	1	668	c.668C>T	c.(667-669)GCT>GTT	p.A223V	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	223	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTAGGAAACAGCAATGAGAAT	0.507													21	41					0	0	1	0	0
OR52H1	390067	broad.mit.edu	37	11	5566226	5566226	+	Silent	SNP	G	A	A	rs35658346		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5566226G>A	uc010qzh.1	-	1	528	c.528C>T	c.(526-528)TTC>TTT	p.F176F	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTGTCCTGCAGAAAGGCAGGC	0.493													20	42					0	0	1	0	0
OR52H1	390067	broad.mit.edu	37	11	5566459	5566459	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5566459C>T	uc010qzh.1	-	1	295	c.295G>A	c.(295-297)GAA>AAA	p.E99K	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AATGTGATTTCGCGAGCCCCT	0.468													30	43					0	0	1	0	0
OR52H1	390067	broad.mit.edu	37	11	5566641	5566641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5566641G>A	uc010qzh.1	-	1	113	c.113C>T	c.(112-114)CCC>CTC	p.P38L	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATACAGAAGGGAATTCCAAT	0.458													29	58					0	0	1	0	0
OR52B6	340980	broad.mit.edu	37	11	5602589	5602589	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5602589G>A	uc010qzi.1	+	1	483	c.483G>A	c.(481-483)GGG>GGA	p.G161G	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGTCATTGGGAAGATCGTCA	0.512													72	203					0	0	1	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5626711	5626711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5626711G>A	uc001mbf.2	+	4	992	c.748G>A	c.(748-750)GAT>AAT	p.D250N	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Missense_Mutation_p.D196N|TRIM6_uc010qzj.1_Missense_Mutation_p.D47N|TRIM6_uc001mbc.1_Missense_Mutation_p.D222N|TRIM6_uc001mbe.2_Missense_Mutation_p.D47N|TRIM6_uc010qzk.1_Missense_Mutation_p.D47N|TRIM6_uc010qzl.1_Missense_Mutation_p.D47N|TRIM6_uc001mbd.2_Missense_Mutation_p.D250N|TRIM6_uc001mbg.1_Missense_Mutation_p.D47N|TRIM6_uc009yep.1_Missense_Mutation_p.D47N	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	250						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		GGCTGAGAATGATCTGGTCCA	0.522											OREG0003723	type=REGULATORY REGION|Gene=TRIM6|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	20	56					0	0	1	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5626743	5626743	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5626743G>A	uc001mbf.2	+	4	1024	c.780G>A	c.(778-780)GAG>GAA	p.E260E	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Silent_p.E206E|TRIM6_uc010qzj.1_Silent_p.E57E|TRIM6_uc001mbc.1_Silent_p.E232E|TRIM6_uc001mbe.2_Silent_p.E57E|TRIM6_uc010qzk.1_Silent_p.E57E|TRIM6_uc010qzl.1_Silent_p.E57E|TRIM6_uc001mbd.2_Silent_p.E260E|TRIM6_uc001mbg.1_Silent_p.E57E|TRIM6_uc009yep.1_Silent_p.E57E	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	260						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		CGCTGCGAGAGCTCATCTCGG	0.522											OREG0003723	type=REGULATORY REGION|Gene=TRIM6|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	13	48					0	0	1	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5655066	5655066	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5655066G>A	uc001mbf.2	+	9	1762	c.1518G>A	c.(1516-1518)AAG>AAA	p.K506K	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Silent_p.K152K|TRIM34_uc009yeq.2_5'UTR|TRIM34_uc001mbi.2_Silent_p.K152K|TRIM34_uc001mbj.2_Silent_p.K152K	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	506						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		AGAGGCTGAAGAAGGAAGAGG	0.453													9	53					0	0	1	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5664531	5664531	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5664531G>A	uc001mbf.2	+	14	2365	c.2121G>A	c.(2119-2121)GTG>GTA	p.V707V	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Silent_p.V353V|TRIM34_uc009yeq.2_Silent_p.V108V|TRIM34_uc001mbi.2_Silent_p.V353V|TRIM78P_uc009yer.2_Intron	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	707						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		ACTGGGAAGTGGACGTGTCCA	0.418													18	51					0	0	1	0	0
TRIM5	85363	broad.mit.edu	37	11	5687273	5687273	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5687273G>A	uc001mbm.1	-	6	1063	c.806C>T	c.(805-807)CCA>CTA	p.P269L	TRIM78P_uc009yer.2_RNA|TRIM5_uc001mbl.1_RNA|TRIM5_uc001mbn.2_Missense_Mutation_p.P269L|TRIM5_uc001mbo.2_Missense_Mutation_p.P269L|TRIM5_uc001mbp.2_Missense_Mutation_p.P269L	NM_033034	NP_149023	Q9C035	TRIM5_HUMAN	tripartite motif protein TRIM5 isoform alpha	269					interspecies interaction between organisms|protein trimerization|response to virus	cytoplasm|cytoplasmic mRNA processing body	ligase activity|protein binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)|Lung NSC(207;0.138)|all_lung(207;0.221)		Epithelial(150;7.21e-09)|BRCA - Breast invasive adenocarcinoma(625;0.139)		TTGATTTTTTGGAAAAGTTTC	0.403													30	90					0	0	1	0	0
TRIM22	10346	broad.mit.edu	37	11	5730807	5730807	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5730807C>T	uc001mbr.2	+	8	1703	c.1426C>T	c.(1426-1428)CGA>TGA	p.R476*	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|TRIM22_uc009yes.2_Nonsense_Mutation_p.R472*|TRIM22_uc010qzm.1_Nonsense_Mutation_p.R304*|TRIM22_uc009yeu.2_Nonsense_Mutation_p.R287*|OR56B1_uc001mbs.1_Intron|OR56B1_uc009yev.1_Intron	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	476	B30.2/SPRY.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		TCGCTTTTCTCGACCTGCTTA	0.473													53	176					0	0	1	0	0
TRIM22	10346	broad.mit.edu	37	11	5730827	5730827	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5730827C>T	uc001mbr.2	+	8	1723	c.1446C>T	c.(1444-1446)TTC>TTT	p.F482F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|TRIM22_uc009yes.2_Silent_p.F478F|TRIM22_uc010qzm.1_Silent_p.F310F|TRIM22_uc009yeu.2_Silent_p.F293F|OR56B1_uc001mbs.1_Intron|OR56B1_uc009yev.1_Intron	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	482	B30.2/SPRY.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		ATCCGTATTTCAATCCTTGGA	0.483													35	178					0	0	1	0	0
OR56B1	387748	broad.mit.edu	37	11	5757959	5757959	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5757959C>T	uc001mbt.1	+	1	213	c.213C>T	c.(211-213)TTC>TTT	p.F71F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Silent_p.F71F|OR56B1_uc009yev.1_Silent_p.F71F	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		TGTATATTTTCCTTGGCATCC	0.493													16	50					0	0	1	0	0
OR56B1	387748	broad.mit.edu	37	11	5758549	5758549	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5758549C>T	uc001mbt.1	+	1	803	c.803C>T	c.(802-804)TCA>TTA	p.S268L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		GTAGTGATTTCAGTGACTCAT	0.443													107	276					0	0	1	0	0
OR56B1	387748	broad.mit.edu	37	11	5758568	5758568	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5758568G>A	uc001mbt.1	+	1	822	c.822G>A	c.(820-822)GAG>GAA	p.E274E	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	274	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		ATCTGACAGAGATGAAGGCTA	0.433													83	348					0	0	1	0	0
OR52N4	390072	broad.mit.edu	37	11	5776016	5776016	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5776016C>T	uc001mbu.2	+	1	94	c.46C>T	c.(46-48)CTG>TTG	p.L16L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		TTCATTTATTCTGAATGGAGT	0.413													27	59					0	0	1	0	0
OR52N4	390072	broad.mit.edu	37	11	5776054	5776054	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5776054G>A	uc001mbu.2	+	1	132	c.84G>A	c.(82-84)TGG>TGA	p.W28*	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		CACAACTCTGGATTTCCTTCC	0.438													27	69					0	0	1	0	0
OR52N4	390072	broad.mit.edu	37	11	5776262	5776262	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5776262G>A	uc001mbu.2	+	1	340	c.292G>A	c.(292-294)GAA>AAA	p.E98K	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		TGGATTTGATGAATGCCTTGT	0.488													25	78					0	0	1	0	0
OR52N4	390072	broad.mit.edu	37	11	5776758	5776758	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5776758C>T	uc001mbu.2	+	1	836	c.788C>T	c.(787-789)TCC>TTC	p.S263F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		TCCTTCTTTTCCCACCGCTTT	0.478													45	142					0	0	1	0	0
OR52N5	390075	broad.mit.edu	37	11	5798909	5798909	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5798909C>T	uc010qzn.1	-	1	956	c.956G>A	c.(955-957)GGT>GAT	p.G319D	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	319	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		ACCCTTATCACCCTGGAAGAA	0.343													40	25					0	0	1	0	0
OR52N5	390075	broad.mit.edu	37	11	5799018	5799018	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5799018G>A	uc010qzn.1	-	1	847	c.847C>T	c.(847-849)CAC>TAC	p.H283Y	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	283	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		ACAATGATGTGAAGAGAAGGG	0.423													24	14					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5841610	5841610	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5841610C>T	uc010qzp.1	+	1	45	c.45C>T	c.(43-45)ATC>ATT	p.I15I	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATTCTTTATCTTGAATGGCG	0.507													13	73					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5841957	5841957	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5841957C>T	uc010qzp.1	+	1	392	c.392C>T	c.(391-393)CCC>CTC	p.P131L	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCTGCTACCCCTTACGCTAT	0.552													21	87					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5842090	5842090	+	Silent	SNP	C	T	T	rs146871183		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5842090C>T	uc010qzp.1	+	1	525	c.525C>T	c.(523-525)TTC>TTT	p.F175F	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGGGAACTTCATCCCCCACA	0.512													45	134					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5842129	5842129	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5842129G>A	uc010qzp.1	+	1	564	c.564G>A	c.(562-564)AAG>AAA	p.K188K	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGTGGCCAAGGTATCCTGTG	0.478													50	209					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5842169	5842169	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5842169C>T	uc010qzp.1	+	1	604	c.604C>T	c.(604-606)CTG>TTG	p.L202L	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TATTTATGGTCTGATGGTTGC	0.468													78	227					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5842311	5842311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5842311C>T	uc010qzp.1	+	1	746	c.746C>T	c.(745-747)TCC>TTC	p.S249F	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACATGTGTTCCATTGTGATC	0.428													11	117					0	0	1	0	0
OR52E6	390078	broad.mit.edu	37	11	5862608	5862608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5862608G>A	uc010qzq.1	-	1	520	c.520C>T	c.(520-522)CGT>TGT	p.R174C	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGATGATACGATGTCCACAG	0.478													39	107					0	0	1	0	0
OR52E6	390078	broad.mit.edu	37	11	5863040	5863040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5863040C>T	uc010qzq.1	-	1	88	c.88G>A	c.(88-90)GGA>AGA	p.G30R	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAAGGGAATCCAATCCAGATG	0.448													33	84					0	0	1	0	0
OR52E8	390079	broad.mit.edu	37	11	5878886	5878886	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5878886G>A	uc010qzr.1	-	1	47	c.47C>T	c.(46-48)TCT>TTT	p.S16F	TRIM5_uc001mbq.1_Intron	NM_001005168	NP_001005168	Q6IFG1	O52E8_HUMAN	olfactory receptor, family 52, subfamily E,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.114)		Epithelial(150;2.37e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAGGAATGAAGAAGGATGGAA	0.433													57	159					0	0	1	0	0
OR52E4	390081	broad.mit.edu	37	11	5906301	5906301	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5906301T>A	uc010qzs.1	+	1	779	c.779T>A	c.(778-780)TTT>TAT	p.F260Y	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTTTTTTCTTTTATGACACAT	0.423													59	129					0	0	1	0	0
OR56A5	390084	broad.mit.edu	37	11	5988832	5988832	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:5988832C>T	uc010qzu.1	-	1	893	c.893G>A	c.(892-894)AGA>AAA	p.R298K		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	298	Cytoplasmic (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						CTCCTTGGTTCTCACACCATA	0.463													5	23					0	0	1	0	0
OR52L1	338751	broad.mit.edu	37	11	6007673	6007673	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6007673C>T	uc001mcd.2	-	1	543	c.488G>A	c.(487-489)GGA>GAA	p.G163E		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACCACCATTCCGATGCACCC	0.512													6	85					0	0	1	0	0
OR56A4	120793	broad.mit.edu	37	11	6023314	6023314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6023314C>T	uc010qzv.1	-	1	1065	c.1065G>A	c.(1063-1065)AAG>AAA	p.K355K		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGATTCCCTGCTTGATCTCCT	0.433													31	53					0	0	1	0	0
OR56A4	120793	broad.mit.edu	37	11	6023414	6023414	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6023414C>T	uc010qzv.1	-	1	965	c.965G>A	c.(964-966)AGA>AAA	p.R322K		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGAGGAATTCTCTTCCTGGC	0.532													15	43					0	0	1	0	0
OR56A1	120796	broad.mit.edu	37	11	6048030	6048030	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6048030C>T	uc010qzw.1	-	1	905	c.905G>A	c.(904-906)CGG>CAG	p.R302Q		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTCTTTGGTCCGAACCCCATA	0.448													8	82					0	0	1	0	0
OR56A1	120796	broad.mit.edu	37	11	6048319	6048319	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6048319G>A	uc010qzw.1	-	1	616	c.616C>T	c.(616-618)CAA>TAA	p.Q206*		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCACAAATTGGTAGATTCTG	0.453													31	99					0	0	1	0	0
OR56A1	120796	broad.mit.edu	37	11	6048773	6048773	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6048773G>A	uc010qzw.1	-	1	162	c.162C>T	c.(160-162)ATC>ATT	p.I54I		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCTGGATGGTGATCAGGAGGG	0.612													34	60					0	0	1	0	0
OR56B4	196335	broad.mit.edu	37	11	6129180	6129180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6129180G>A	uc010qzx.1	+	1	172	c.172G>A	c.(172-174)GAG>AAG	p.E58K		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	58	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATTCAACATGAGACCGTGCT	0.522													23	44					0	0	1	0	0
OR52B2	255725	broad.mit.edu	37	11	6190872	6190872	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6190872G>A	uc010qzy.1	-	1	685	c.685C>T	c.(685-687)CGT>TGT	p.R229C		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGGGCAAACGAAACACTGCT	0.478													17	35					0	0	1	0	0
OR52B2	255725	broad.mit.edu	37	11	6191051	6191051	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6191051G>A	uc010qzy.1	-	1	506	c.506C>T	c.(505-507)CCC>CTC	p.P169L		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAGGCAGAAGGGCAGCCGCTT	0.502													4	36					0	0	1	0	0
OR52B2	255725	broad.mit.edu	37	11	6191187	6191187	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6191187G>A	uc010qzy.1	-	1	370	c.370C>T	c.(370-372)CGC>TGC	p.R124C		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCACAAAGCGATCAAAGGCC	0.498													26	56					0	0	1	0	0
OR52B2	255725	broad.mit.edu	37	11	6191299	6191299	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6191299G>A	uc010qzy.1	-	1	258	c.258C>T	c.(256-258)ATC>ATT	p.I86I		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAAGCCAAAAGATGGCTAGGG	0.493													47	125					0	0	1	0	0
C11orf42	160298	broad.mit.edu	37	11	6231270	6231270	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6231270G>A	uc001mcj.2	+	2	311	c.263G>A	c.(262-264)GGA>GAA	p.G88E		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	88										ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGCAGGCAGGATCTGAGGGT	0.632													20	38					0	0	1	0	0
C11orf42	160298	broad.mit.edu	37	11	6231278	6231278	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6231278G>A	uc001mcj.2	+	2	319	c.271G>A	c.(271-273)GGT>AGT	p.G91S		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	91										ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGATCTGAGGGTGCCTTCGC	0.622													19	45					0	0	1	0	0
FAM160A2	84067	broad.mit.edu	37	11	6232963	6232963	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6232963G>A	uc001mcl.3	-	12	3051	c.2692C>T	c.(2692-2694)CCT>TCT	p.P898S	FAM160A2_uc001mck.3_Missense_Mutation_p.P912S	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	898					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						GAAGCCCCAGGGGAGCCCCCA	0.622													6	99					0	0	1	0	0
FAM160A2	84067	broad.mit.edu	37	11	6245348	6245348	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6245348G>A	uc001mcl.3	-	3	628	c.269C>T	c.(268-270)CCC>CTC	p.P90L	FAM160A2_uc001mck.3_Missense_Mutation_p.P90L|FAM160A2_uc001mcm.2_Missense_Mutation_p.P90L	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	90					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						AGGGCCTGTGGGGGCCGAGGG	0.627													13	31					0	0	1	0	0
CNGA4	1262	broad.mit.edu	37	11	6260441	6260441	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6260441G>A	uc001mco.2	+	1	112	c.5G>A	c.(4-6)AGC>AAC	p.S2N	CNGA4_uc010raa.1_Intron|CNGA4_uc001mcn.2_Intron	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	2	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGAACCATGAGCCAGGACACC	0.577													27	65					0	0	1	0	0
CNGA4	1262	broad.mit.edu	37	11	6262747	6262747	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6262747C>T	uc001mco.2	+	5	1111	c.1004C>T	c.(1003-1005)GCT>GTT	p.A335V	CNGA4_uc010raa.1_Missense_Mutation_p.A104V|CNGA4_uc001mcn.2_Missense_Mutation_p.A295V	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	335	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCAGAAGTGGCTGTGTCTGTG	0.577													37	86					0	0	1	0	0
CNGA4	1262	broad.mit.edu	37	11	6262879	6262879	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6262879G>A	uc001mco.2	+	5	1243	c.1136G>A	c.(1135-1137)GGA>GAA	p.G379E	CNGA4_uc010raa.1_Missense_Mutation_p.G148E|CNGA4_uc001mcn.2_Missense_Mutation_p.G339E	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	379	cNMP.|Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCCGCAAAGGAGACATTGGC	0.552													54	205					0	0	1	0	0
CCKBR	887	broad.mit.edu	37	11	6290997	6290997	+	Missense_Mutation	SNP	C	T	T	rs148924129		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6290997C>T	uc001mcp.2	+	2	443	c.250C>T	c.(250-252)CGC>TGC	p.R84C	CCKBR_uc001mcq.2_Missense_Mutation_p.R12C|CCKBR_uc001mcr.2_Missense_Mutation_p.R84C|CCKBR_uc001mcs.2_Missense_Mutation_p.R84C	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	84	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	ACTGAGCCGCCGCCTGAGGAC	0.552													30	84					0	0	1	0	0
CCKBR	887	broad.mit.edu	37	11	6291949	6291949	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6291949C>T	uc001mcp.2	+	4	920	c.727C>T	c.(727-729)CGC>TGC	p.R243C	CCKBR_uc001mcq.2_Missense_Mutation_p.R171C|CCKBR_uc001mcr.2_Missense_Mutation_p.R243C|CCKBR_uc001mcs.2_Missense_Mutation_p.R243C|CCKBR_uc001mct.1_5'Flank	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	243	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	GCTTATCTCTCGCGAGCTCTA	0.597													38	67					0	0	1	0	0
APBB1	322	broad.mit.edu	37	11	6432347	6432347	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6432347G>A	uc001mdb.1	-	2	331	c.231C>T	c.(229-231)CTC>CTT	p.L77L	APBB1_uc001mdc.1_Silent_p.L77L|APBB1_uc010rah.1_Intron	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	77					apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding			breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		CGGCCCGCCGGAGCTGGTTCT	0.677													36	131					0	0	1	0	0
TRIM3	10612	broad.mit.edu	37	11	6477676	6477676	+	Missense_Mutation	SNP	G	A	A	rs138597075		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6477676G>A	uc001mdh.2	-	7	1667	c.1280C>T	c.(1279-1281)TCC>TTC	p.S427F	TRIM3_uc001mdi.2_Missense_Mutation_p.S427F|TRIM3_uc010raj.1_Missense_Mutation_p.S308F|TRIM3_uc009yfd.2_Missense_Mutation_p.S427F|TRIM3_uc010rak.1_Missense_Mutation_p.S427F|TRIM3_uc001mdj.2_Missense_Mutation_p.S308F	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	427					nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCGTCCGGGGAAGGTGGCAG	0.697													13	21					0	0	1	0	0
TRIM3	10612	broad.mit.edu	37	11	6477836	6477836	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6477836G>A	uc001mdh.2	-	7	1507	c.1120C>T	c.(1120-1122)CTT>TTT	p.L374F	TRIM3_uc001mdi.2_Missense_Mutation_p.L374F|TRIM3_uc010raj.1_Missense_Mutation_p.L255F|TRIM3_uc009yfd.2_Missense_Mutation_p.L374F|TRIM3_uc010rak.1_Missense_Mutation_p.L374F|TRIM3_uc001mdj.2_Missense_Mutation_p.L255F	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	374	Filamin.				nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCACCGGAAGGCGCGTGCCG	0.632													13	41					0	0	1	0	0
DNHD1	144132	broad.mit.edu	37	11	6532654	6532654	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6532654C>T	uc001mdw.3	+	7	1951	c.1387C>T	c.(1387-1389)CGA>TGA	p.R463*	DNHD1_uc001mdp.2_Nonsense_Mutation_p.R463*|DNHD1_uc001mdq.2_Nonsense_Mutation_p.R152*	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	463					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		ATCCATTCTTCGACTGGTAAG	0.517													46	94					0	0	1	0	0
RRP8	23378	broad.mit.edu	37	11	6624662	6624662	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6624662G>A	uc001med.2	-	1	150	c.71C>T	c.(70-72)CCT>CTT	p.P24L	ILK_uc001mee.2_5'Flank|ILK_uc001mef.2_5'Flank|ILK_uc010rap.1_5'Flank|ILK_uc010raq.1_5'Flank|ILK_uc001meg.2_5'Flank|ILK_uc001meh.2_5'Flank	NM_015324	NP_056139	O43159	RRP8_HUMAN	ribosomal RNA processing 8, methyltransferase,	24					chromatin modification|chromatin silencing at rDNA|rRNA processing|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	methylated histone residue binding|S-adenosylmethionine-dependent methyltransferase activity				0						CGCAGGCGGAGGTCGTGAGAT	0.667													4	11					0	0	1	0	0
TPP1	1200	broad.mit.edu	37	11	6635912	6635912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6635912G>A	uc001mel.1	-	13	1618	c.1557C>T	c.(1555-1557)ACC>ACT	p.T519T	TAF10_uc001mej.1_5'Flank|TPP1_uc001mek.1_Silent_p.T276T	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	519					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		GGCAGCCACGGGTTACCTAGG	0.532													27	93					0	0	1	0	0
DCHS1	8642	broad.mit.edu	37	11	6649939	6649939	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6649939C>T	uc001mem.1	-	13	5694	c.5284G>A	c.(5284-5286)GAG>AAG	p.E1762K		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	1762	Cadherin 17.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCTGGCCCTCAGGCACCTCC	0.572													7	93					0	0	1	0	0
DCHS1	8642	broad.mit.edu	37	11	6650760	6650760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6650760G>A	uc001mem.1	-	12	5494	c.5084C>T	c.(5083-5085)TCT>TTT	p.S1695F		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	1695	Cadherin 16.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGATCCAGAGAAAAGCTTTC	0.547													6	16					0	0	1	0	0
DCHS1	8642	broad.mit.edu	37	11	6661841	6661841	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6661841C>T	uc001mem.1	-	2	1414	c.1004G>A	c.(1003-1005)CGA>CAA	p.R335Q		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	335	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCACCATCTCGTGCTTGCAC	0.587													50	80					0	0	1	0	0
OR2AG2	338755	broad.mit.edu	37	11	6790008	6790008	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6790008G>A	uc001meq.1	-	1	181	c.181C>T	c.(181-183)CTC>TTC	p.L61F		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCAAGCAGGAGGTACATGGGC	0.522													11	161					0	0	1	0	0
OR2AG1	144125	broad.mit.edu	37	11	6806670	6806670	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6806670C>T	uc001mer.1	+	1	402	c.402C>T	c.(400-402)ACC>ACT	p.T134T		NM_001004489	NP_001004489	Q9H205	O2AG1_HUMAN	olfactory receptor, family 2, subfamily AG,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.19e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CATACATGACCCTCATGAGCT	0.527													19	53					0	0	1	0	0
OR10A5	144124	broad.mit.edu	37	11	6866924	6866924	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6866924G>A	uc001met.1	+	1	11	c.11G>A	c.(10-12)GGA>GAA	p.G4E		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ATGGCTATAGGAAACTGGACA	0.383													66	206					0	0	1	0	0
OR10A5	144124	broad.mit.edu	37	11	6867339	6867339	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6867339G>A	uc001met.1	+	1	426	c.426G>A	c.(424-426)CGG>CGA	p.R142R		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		AAAGGACACGGGCCAAACTGG	0.537													40	146					0	0	1	0	0
OR10A5	144124	broad.mit.edu	37	11	6867615	6867615	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6867615G>A	uc001met.1	+	1	702	c.702G>A	c.(700-702)GGG>GGA	p.G234G		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CAGCTAAAGGGAAGCATAAAG	0.453													69	188					0	0	1	0	0
OR10A2	341276	broad.mit.edu	37	11	6891435	6891435	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6891435C>T	uc001meu.1	+	1	450	c.450C>T	c.(448-450)CTC>CTT	p.L150L		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	150	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CCACATGGCTCTTCAGTTTTC	0.532													62	153					0	0	1	0	0
OR10A4	283297	broad.mit.edu	37	11	6898505	6898505	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6898505C>T	uc010rat.1	+	1	627	c.627C>T	c.(625-627)CTC>CTT	p.L209L		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TATTCATTCTCTTTCCTTTCT	0.507													41	77					0	0	1	0	0
OR2D2	120776	broad.mit.edu	37	11	6912853	6912853	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6912853C>T	uc010rau.1	-	1	879	c.879G>A	c.(877-879)AAG>AAA	p.K293K		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCTTCACATCCTTGTTTCTCA	0.458													23	62					0	0	1	0	0
OR2D2	120776	broad.mit.edu	37	11	6913201	6913201	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6913201G>A	uc010rau.1	-	1	531	c.531C>T	c.(529-531)TTC>TTT	p.F177F		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCTCACAAAAGAAATGAGCAA	0.493													9	54					0	0	1	0	0
OR2D2	120776	broad.mit.edu	37	11	6913368	6913368	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6913368G>A	uc010rau.1	-	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCAACATAGCGATCATAGGAC	0.483													51	32					0	0	1	0	0
OR2D2	120776	broad.mit.edu	37	11	6913431	6913431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6913431G>A	uc010rau.1	-	1	301	c.301C>T	c.(301-303)CTT>TTT	p.L101F		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		AAAAAGAGAAGTCGAGCTGCG	0.478													21	64					0	0	1	0	0
ZNF215	7762	broad.mit.edu	37	11	6953543	6953543	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6953543C>T	uc001mey.2	+	3	628	c.40C>T	c.(40-42)CGA>TGA	p.R14*	ZNF215_uc010raw.1_Nonsense_Mutation_p.R14*|ZNF215_uc010rax.1_5'UTR|ZNF215_uc001mez.1_Nonsense_Mutation_p.R14*	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	14					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		CTCAAAACCTCGAAACCTGTC	0.468													33	73					0	0	1	0	0
ZNF215	7762	broad.mit.edu	37	11	6964814	6964814	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6964814G>A	uc001mey.2	+	6	1242	c.654G>A	c.(652-654)TTG>TTA	p.L218L	ZNF215_uc010raw.1_Nonsense_Mutation_p.W174*|ZNF215_uc010rax.1_Intron|ZNF215_uc001mez.1_Silent_p.L218L	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	218	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		GCCTTAAGTTGGAGAGTAAGA	0.343													54	120					0	0	1	0	0
ZNF215	7762	broad.mit.edu	37	11	6977581	6977581	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:6977581G>A	uc001mey.2	+	7	1961	c.1373G>A	c.(1372-1374)GGA>GAA	p.G458E	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Missense_Mutation_p.G220E|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	458					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		CTCCATTTTGGAAACAATTTC	0.393													19	70					0	0	1	0	0
ZNF214	7761	broad.mit.edu	37	11	7022292	7022292	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7022292C>T	uc001mfa.2	-	3	925	c.622G>A	c.(622-624)GAC>AAC	p.D208N	ZNF214_uc010ray.1_Missense_Mutation_p.D208N|ZNF214_uc009yfh.1_Missense_Mutation_p.D208N	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	208					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		CTCAGTAGGTCTTCTTGACAT	0.388													19	85					0	0	1	0	0
NLRP14	338323	broad.mit.edu	37	11	7059991	7059991	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7059991G>A	uc001mfb.1	+	2	497	c.174G>A	c.(172-174)CTG>CTA	p.L58L		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	58	DAPIN.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GGGAGGACCTGGCCAATTTGA	0.458													18	82					0	0	1	0	0
NLRP14	338323	broad.mit.edu	37	11	7064557	7064557	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7064557G>A	uc001mfb.1	+	4	1623	c.1300G>A	c.(1300-1302)GGA>AGA	p.G434R		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	434	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		CGCTGCCAAAGGAATATGGAC	0.428													57	137					0	0	1	0	0
NLRP14	338323	broad.mit.edu	37	11	7064875	7064875	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7064875C>T	uc001mfb.1	+	4	1941	c.1618C>T	c.(1618-1620)CGA>TGA	p.R540*		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	540					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GAATGAAGATCGAGTAAAACA	0.348													31	89					0	0	1	0	0
NLRP14	338323	broad.mit.edu	37	11	7091658	7091658	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7091658G>A	uc001mfb.1	+	11	3440	c.3117G>A	c.(3115-3117)AAG>AAA	p.K1039K		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	1039					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		AAGTCTTGAAGTCTCCTAAGT	0.388													35	60					0	0	1	0	0
RBMXL2	27288	broad.mit.edu	37	11	7110373	7110373	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7110373G>A	uc001mfc.2	+	1	209	c.22G>A	c.(22-24)GGG>AGG	p.G8R		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	8	RRM.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GGATCGCCCGGGGAAGCTGTT	0.632													7	31					0	0	1	0	0
RBMXL2	27288	broad.mit.edu	37	11	7110510	7110510	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7110510C>T	uc001mfc.2	+	1	346	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	53	RRM.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GCTTCGCGTTCGTCACCTTTG	0.592													6	19					0	0	1	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111030	7111030	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7111030G>A	uc001mfc.2	+	1	866	c.679G>A	c.(679-681)GAA>AAA	p.E227K		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	227	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGACTACCGCGAACCCCGGGG	0.706													8	24					0	0	1	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111037	7111037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7111037G>A	uc001mfc.2	+	1	873	c.686G>A	c.(685-687)CGG>CAG	p.R229Q		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	229	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CGCGAACCCCGGGGTTTTGCC	0.701													13	19					0	0	1	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111184	7111184	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7111184C>T	uc001mfc.2	+	1	1020	c.833C>T	c.(832-834)TCC>TTC	p.S278F		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	278	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGCAGAGGCTCCCATCGAGAG	0.657													23	42					0	0	1	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111239	7111239	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7111239G>A	uc001mfc.2	+	1	1075	c.888G>A	c.(886-888)CGG>CGA	p.R296R		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	296	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CCCCAGGACGGGGGACACCGC	0.662													13	29					0	0	1	0	0
SYT9	143425	broad.mit.edu	37	11	7324365	7324365	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7324365C>T	uc001mfe.2	+	2	478	c.241C>T	c.(241-243)CCG>TCG	p.P81S	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	81	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CTGCTGGGTTCCGTGGCGAGA	0.542													41	86					0	0	1	0	0
SYT9	143425	broad.mit.edu	37	11	7334709	7334709	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7334709G>A	uc001mfe.2	+	3	818	c.581G>A	c.(580-582)GGA>GAA	p.G194E	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_Intron	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	194	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CAGTTGACTGGAATTGGTAGA	0.413													9	93					0	0	1	0	0
SYT9	143425	broad.mit.edu	37	11	7334968	7334968	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7334968C>T	uc001mfe.2	+	3	1077	c.840C>T	c.(838-840)ACC>ACT	p.T280T	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_Intron	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	280	Cytoplasmic (Potential).|C2 1.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		ACAGAAAGACCCTGAACCCTG	0.438													27	278					0	0	1	0	0
SYT9	143425	broad.mit.edu	37	11	7439304	7439304	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7439304C>T	uc001mfe.2	+	5	1519	c.1282C>T	c.(1282-1284)CCT>TCT	p.P428S	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	428	Cytoplasmic (Potential).|C2 2.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CTTTGATGTCCCTCCCGAGAA	0.478													17	77					0	0	1	0	0
PPFIBP2	8495	broad.mit.edu	37	11	7647019	7647019	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7647019C>T	uc001mfj.3	+	8	1111	c.723C>T	c.(721-723)GCC>GCT	p.A241A	PPFIBP2_uc010rbb.1_Silent_p.A164A|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Silent_p.A164A|PPFIBP2_uc010rbd.1_Silent_p.A83A|PPFIBP2_uc010rbe.1_Silent_p.A129A|PPFIBP2_uc001mfl.3_Silent_p.A98A	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	241	Potential.				cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		CTGAAGTCGCCCAGCTGCAAG	0.562													20	48					0	0	1	0	0
PPFIBP2	8495	broad.mit.edu	37	11	7656797	7656797	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7656797C>G	uc001mfj.3	+	14	1597	c.1209C>G	c.(1207-1209)AAC>AAG	p.N403K	PPFIBP2_uc010rbb.1_Missense_Mutation_p.N326K|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Missense_Mutation_p.N326K|PPFIBP2_uc010rbd.1_Missense_Mutation_p.N245K|PPFIBP2_uc010rbe.1_Missense_Mutation_p.N291K|PPFIBP2_uc001mfl.3_Missense_Mutation_p.N260K|PPFIBP2_uc009yfj.1_Missense_Mutation_p.N47K	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	403					cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		TGGATGGGAACCAGCCCTTCC	0.418													14	87					0	0	1	0	0
PPFIBP2	8495	broad.mit.edu	37	11	7661052	7661052	+	Silent	SNP	T	G	G	rs56030009		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7661052T>G	uc001mfj.3	+	15	1714	c.1326T>G	c.(1324-1326)CCT>CCG	p.P442P	PPFIBP2_uc010rbb.1_Silent_p.P365P|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Silent_p.P365P|PPFIBP2_uc010rbd.1_Silent_p.P284P|PPFIBP2_uc010rbe.1_Silent_p.P330P|PPFIBP2_uc001mfl.3_Silent_p.P299P|PPFIBP2_uc009yfj.1_Silent_p.P86P	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	442					cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		CCAAATCTCCTCCCACCATCT	0.597													40	136					0	0	1	0	0
OVCH2	341277	broad.mit.edu	37	11	7723765	7723765	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7723765G>A	uc010rbf.1	-	4	402	c.402C>T	c.(400-402)TCC>TCT	p.S134S		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		GTTTCTTGGTGGAGAAATGTG	0.418													16	19					0	0	1	0	0
OR5P2	120065	broad.mit.edu	37	11	7817655	7817655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7817655G>A	uc001mfp.1	-	1	835	c.835C>T	c.(835-837)CCC>TCC	p.P279S		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TTCAACATGGGAATCACCACT	0.438													30	107					0	0	1	0	0
OR5P2	120065	broad.mit.edu	37	11	7817892	7817892	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7817892C>T	uc001mfp.1	-	1	598	c.598G>A	c.(598-600)GGA>AGA	p.G200R		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ATGATGGATCCAGAAGAAAAT	0.453													8	83					0	0	1	0	0
OR5P3	120066	broad.mit.edu	37	11	7846791	7846792	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7846791_7846792GG>AA	uc010rbg.1	-	1	728_729	c.728_729CC>TT	c.(727-729)TCC>TTT	p.S243F		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CAGTGAGGTGGGAGGTGCAGGT	0.505													23	88					0	0	1	0	0
OR5P3	120066	broad.mit.edu	37	11	7847058	7847058	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7847058C>T	uc010rbg.1	-	1	462	c.462G>A	c.(460-462)GTG>GTA	p.V154V		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCCAAGCATTCACACATCCAC	0.473													36	70					0	0	1	0	0
OR5P3	120066	broad.mit.edu	37	11	7847181	7847181	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7847181G>A	uc010rbg.1	-	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CAGCCAGCAGGAAGCACTCGG	0.547													38	111					0	0	1	0	0
OR5P3	120066	broad.mit.edu	37	11	7847480	7847480	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7847480G>A	uc010rbg.1	-	1	40	c.40C>T	c.(40-42)CTT>TTT	p.L14F		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AACCCCAAAAGAGTAAACTCT	0.343													6	59					0	0	1	0	0
OR10A6	390093	broad.mit.edu	37	11	7949293	7949293	+	Missense_Mutation	SNP	C	T	T	rs148940548	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7949293C>T	uc010rbh.1	-	1	917	c.917G>A	c.(916-918)CGA>CAA	p.R306Q		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CACTCGCCTTCGCCATAATTT	0.373													45	100					0	0	1	0	0
OR10A6	390093	broad.mit.edu	37	11	7950045	7950045	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7950045G>A	uc010rbh.1	-	1	165	c.165C>T	c.(163-165)CTC>CTT	p.L55L		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	55	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGGGAACGTGGAGGCTCTGGT	0.473													40	117					0	0	1	0	0
OR10A6	390093	broad.mit.edu	37	11	7950069	7950069	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7950069G>A	uc010rbh.1	-	1	141	c.141C>T	c.(139-141)GTC>GTT	p.V47V		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	47	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GGGAGACGATGACTATAATAA	0.463													41	98					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7981225	7981225	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7981225C>T	uc001mfv.1	-	2	1951	c.1934G>A	c.(1933-1935)GGG>GAG	p.G645E		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	645							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TTCCTCTGTCCCTCTGCCTTT	0.269													13	41					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7981739	7981739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7981739G>A	uc001mfv.1	-	2	1437	c.1420C>T	c.(1420-1422)CAT>TAT	p.H474Y		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	474	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GACATGGCATGAAAAAAGTCC	0.532													13	124					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7981915	7981915	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7981915G>A	uc001mfv.1	-	2	1261	c.1244C>T	c.(1243-1245)TCC>TTC	p.S415F		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	415	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGCTGCTAGGGAGCACAGACT	0.547													24	64					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7982196	7982196	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:7982196C>T	uc001mfv.1	-	2	980	c.963G>A	c.(961-963)GCG>GCA	p.A321A		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	321	NACHT.						ATP binding	p.A321A(1)		lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGAAGTACCTCGCCCTCTCCT	0.512													40	93					0	0	1	0	0
EIF3F	8665	broad.mit.edu	37	11	8014500	8014500	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8014500C>T	uc001mfw.2	+	4	615	c.582C>T	c.(580-582)GCC>GCT	p.A194A	EIF3F_uc010rbj.1_Silent_p.A45A	NM_003754	NP_003745	O00303	EIF3F_HUMAN	eukaryotic translation initiation factor 3,	194	MPN.					cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			lung(1)	1				Epithelial(150;1.44e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GCCGAGAGGCCCCCAACCCCA	0.562													26	109					0	0	1	0	0
TUB	7275	broad.mit.edu	37	11	8118269	8118269	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8118269G>A	uc001mga.2	+	6	752	c.603G>A	c.(601-603)GAG>GAA	p.E201E	TUB_uc010rbk.1_Silent_p.E207E|TUB_uc001mfy.2_Silent_p.E256E	NM_177972	NP_813977	P50607	TUB_HUMAN	tubby isoform b	201	Asp/Glu-rich.				phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		AGGATGAGGAGGATGAGGAGG	0.542													18	74					0	0	1	0	0
TUB	7275	broad.mit.edu	37	11	8122528	8122528	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8122528C>T	uc001mga.2	+	11	1520	c.1371C>T	c.(1369-1371)ATC>ATT	p.I457I	TUB_uc010rbk.1_Silent_p.I463I|TUB_uc001mfy.2_Silent_p.I512I	NM_177972	NP_813977	P50607	TUB_HUMAN	tubby isoform b	457					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		ACTTCCAGATCATCCATGGCA	0.522													18	76					0	0	1	0	0
RIC3	79608	broad.mit.edu	37	11	8132554	8132554	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8132554C>T	uc001mgd.2	-	6	855	c.801G>A	c.(799-801)ATG>ATA	p.M267I	RIC3_uc001mgb.2_Missense_Mutation_p.M105I|RIC3_uc001mgc.2_Missense_Mutation_p.M266I|RIC3_uc001mge.2_Missense_Mutation_p.M85I|RIC3_uc010rbl.1_Missense_Mutation_p.M217I|RIC3_uc010rbm.1_Missense_Mutation_p.M295I|RIC3_uc009yfm.2_Missense_Mutation_p.M186I|RIC3_uc009yfn.2_Missense_Mutation_p.M70I	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	267	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		CCTCTTCTATCATTCCCATTC	0.448													33	125					0	0	1	0	0
RIC3	79608	broad.mit.edu	37	11	8148302	8148302	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8148302G>A	uc001mgd.2	-	5	628	c.574C>T	c.(574-576)CGA>TGA	p.R192*	RIC3_uc001mgb.2_Nonsense_Mutation_p.R30*|RIC3_uc001mgc.2_Nonsense_Mutation_p.R191*|RIC3_uc001mge.2_Intron|RIC3_uc010rbl.1_Nonsense_Mutation_p.R142*|RIC3_uc010rbm.1_Nonsense_Mutation_p.R220*|RIC3_uc009yfm.2_Intron|RIC3_uc009yfn.2_5'UTR	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	192	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		GTGATTTCTCGGAGCTGATGT	0.443													18	56					0	0	1	0	0
STK33	65975	broad.mit.edu	37	11	8435173	8435173	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8435173G>A	uc001mgi.1	-	11	2132	c.1213C>T	c.(1213-1215)CCA>TCA	p.P405S	STK33_uc001mgj.1_Missense_Mutation_p.P405S|STK33_uc001mgk.1_Missense_Mutation_p.P405S|STK33_uc010rbn.1_Missense_Mutation_p.P364S|STK33_uc001mgl.3_Missense_Mutation_p.P218S	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	405						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		ACACTTTCTGGGTTATTTTTC	0.373													58	124					0	0	1	0	0
STK33	65975	broad.mit.edu	37	11	8476354	8476354	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8476354C>T	uc001mgi.1	-	6	1642	c.723G>A	c.(721-723)CTG>CTA	p.L241L	STK33_uc001mgj.1_Silent_p.L241L|STK33_uc001mgk.1_Silent_p.L241L|STK33_uc010rbn.1_Silent_p.L200L|STK33_uc001mgl.3_Silent_p.L54L|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	241	Protein kinase.					Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		TTATATTTTCCAGTTTCAGAT	0.259													10	52					0	0	1	0	0
STK33	65975	broad.mit.edu	37	11	8478937	8478937	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8478937C>T	uc001mgi.1	-	5	1567	c.648G>A	c.(646-648)AGG>AGA	p.R216R	STK33_uc001mgj.1_Silent_p.R216R|STK33_uc001mgk.1_Silent_p.R216R|STK33_uc010rbn.1_Silent_p.R175R|STK33_uc001mgl.3_Silent_p.R29R|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	216	Protein kinase.					Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		GAATGATCCACCTTGTCTCAT	0.393													23	66					0	0	1	0	0
STK33	65975	broad.mit.edu	37	11	8483425	8483425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8483425C>T	uc001mgi.1	-	4	1404	c.485G>A	c.(484-486)CGA>CAA	p.R162Q	STK33_uc001mgj.1_Missense_Mutation_p.R162Q|STK33_uc001mgk.1_Missense_Mutation_p.R162Q|STK33_uc010rbn.1_Missense_Mutation_p.R121Q|STK33_uc001mgl.3_5'UTR|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	162	Protein kinase.					Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		GTTCACCTCTCGTTCAAGTAA	0.363													33	84					0	0	1	0	0
STK33	65975	broad.mit.edu	37	11	8486289	8486289	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8486289C>T	uc001mgi.1	-	3	1339	c.420G>A	c.(418-420)ACG>ACA	p.T140T	STK33_uc001mgj.1_Silent_p.T140T|STK33_uc001mgk.1_Silent_p.T140T|STK33_uc010rbn.1_Silent_p.T99T|STK33_uc001mgl.3_5'UTR|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	140	Protein kinase.					Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity	p.T140M(1)		ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		TTGCCCACTTCGTTTCTGTTT	0.413													51	84					0	0	1	0	0
ST5	6764	broad.mit.edu	37	11	8752443	8752443	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8752443G>A	uc001mgt.2	-	3	580	c.394C>T	c.(394-396)CTC>TTC	p.L132F	ST5_uc009yfr.2_Intron|ST5_uc001mgu.2_Intron|ST5_uc001mgv.2_Missense_Mutation_p.L132F|ST5_uc010rbq.1_Intron|ST5_uc001mgw.1_Missense_Mutation_p.L132F	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	132					positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		GCAAGGGGGAGGCAGGCAGCG	0.667													16	75					0	0	1	0	0
C11orf16	56673	broad.mit.edu	37	11	8947545	8947545	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:8947545C>T	uc001mhb.3	-	5	793	c.669G>A	c.(667-669)GAG>GAA	p.E223E	C11orf16_uc001mhc.3_Silent_p.E223E	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	223								p.E223V(1)		upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		TGTGCAGCCTCTCCACAGCCT	0.557													32	100					0	0	1	0	0
SCUBE2	57758	broad.mit.edu	37	11	9047337	9047337	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:9047337G>A	uc001mhh.1	-	20	2759	c.2679C>T	c.(2677-2679)ACC>ACT	p.T893T	SCUBE2_uc001mhi.1_Silent_p.T865T|SCUBE2_uc001mhj.1_Silent_p.T701T	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	893	CUB.					extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		TTGACCTGGAGGTGAAGGCGA	0.512													48	135					0	0	1	0	0
FLJ46111	283102	broad.mit.edu	37	11	9116993	9116993	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:9116993G>A	uc010rbv.1	+	1		c.1084G>A				NR_027713				Homo sapiens cDNA FLJ46111 fis, clone TESTI2034913, moderately similar to Keratin, type II cytoskeletal 8.												0						GGCTCAGACTGAGGGCCTCAA	0.552													5	11					0	0	1	0	0
DENND5A	23258	broad.mit.edu	37	11	9199886	9199886	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:9199886G>A	uc001mhl.2	-	8	1954	c.1699C>T	c.(1699-1701)CCC>TCC	p.P567S	DENND5A_uc010rbw.1_Missense_Mutation_p.P567S|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	567	dDENN.									liver(1)	1						GGCAGGTAGGGCTCAGGCTGA	0.453													11	27					0	0	1	0	0
SWAP70	23075	broad.mit.edu	37	11	9715787	9715787	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:9715787C>T	uc001mhw.2	+	2	293	c.194C>T	c.(193-195)TCC>TTC	p.S65F	SWAP70_uc001mhv.2_Missense_Mutation_p.S65F|SWAP70_uc001mhx.2_Missense_Mutation_p.S65F	NM_015055	NP_055870	Q9UH65	SWP70_HUMAN	SWAP-70 protein	65						cytoplasm|lamellipodium|nucleus|plasma membrane	calcium ion binding|DNA binding			ovary(2)|central_nervous_system(1)	3				all cancers(16;1.21e-10)|Epithelial(150;2.81e-09)|BRCA - Breast invasive adenocarcinoma(625;0.00649)		GGTCCAGTGTCCAACCAGGGC	0.453													25	107					0	0	1	0	0
SBF2	81846	broad.mit.edu	37	11	9983625	9983625	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:9983625T>C	uc001mib.2	-	16	1877	c.1739A>G	c.(1738-1740)AAA>AGA	p.K580R	SBF2_uc001mif.3_Missense_Mutation_p.K336R|SBF2_uc001mih.3_Missense_Mutation_p.K109R	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	580					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		TGCCTTTCCTTTAAGGGCTCT	0.448													28	62					0	0	1	0	0
SBF2	81846	broad.mit.edu	37	11	9990017	9990017	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:9990017G>A	uc001mib.2	-	14	1609	c.1471C>T	c.(1471-1473)CTT>TTT	p.L491F	SBF2_uc001mif.3_Missense_Mutation_p.L247F|SBF2_uc001mih.3_Missense_Mutation_p.L20F	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	491					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		GGGAAAGGAAGAATATGAACT	0.413													52	235					0	0	1	0	0
AMPD3	272	broad.mit.edu	37	11	10514928	10514928	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:10514928G>A	uc001mio.1	+	7	1307	c.972G>A	c.(970-972)ATG>ATA	p.M324I	AMPD3_uc010rbz.1_Missense_Mutation_p.M165I|AMPD3_uc001min.1_Missense_Mutation_p.M333I|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.M331I|AMPD3_uc009yfy.2_Missense_Mutation_p.M324I	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	324			M -> T (in AMPDDE).		AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		CCGCCTGCATGAACCAAAAGC	0.597													41	142					0	0	1	0	0
RNF141	50862	broad.mit.edu	37	11	10555624	10555624	+	Nonsense_Mutation	SNP	G	A	A	rs144898917		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:10555624G>A	uc001mis.1	-	2	235	c.82C>T	c.(82-84)CGA>TGA	p.R28*	RNF141_uc009yga.1_RNA|RNF141_uc001mit.1_Nonsense_Mutation_p.R28*	NM_016422	NP_057506	Q8WVD5	RN141_HUMAN	ring finger protein 141	28							zinc ion binding				0				all cancers(16;4.63e-08)|Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.064)		CCACTCTCTCGAACCAACGTA	0.383													58	119					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10602081	10602081	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:10602081C>T	uc010rcc.1	-	20	2802	c.2416G>A	c.(2416-2418)GAA>AAA	p.E806K	uc001miu.2_Intron|MRVI1_uc001miw.2_Missense_Mutation_p.E797K|MRVI1_uc010rcb.1_Missense_Mutation_p.E798K|MRVI1_uc009ygb.1_Missense_Mutation_p.E491K|MRVI1_uc001mix.2_Missense_Mutation_p.E491K|MRVI1_uc001miz.2_Missense_Mutation_p.E715K|MRVI1_uc009ygc.1_Missense_Mutation_p.E715K|MRVI1_uc010rcd.1_Missense_Mutation_p.E600K|MRVI1_uc009ygd.1_Missense_Mutation_p.E491K	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	779	Glu-rich.				platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		TTCTGTTCTTCCTCCTCCTCC	0.493													72	184					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10602129	10602129	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:10602129C>T	uc010rcc.1	-	20	2754	c.2368G>A	c.(2368-2370)GAA>AAA	p.E790K	uc001miu.2_Intron|MRVI1_uc001miw.2_Missense_Mutation_p.E781K|MRVI1_uc010rcb.1_Missense_Mutation_p.E782K|MRVI1_uc009ygb.1_Missense_Mutation_p.E475K|MRVI1_uc001mix.2_Missense_Mutation_p.E475K|MRVI1_uc001miz.2_Missense_Mutation_p.E699K|MRVI1_uc009ygc.1_Missense_Mutation_p.E699K|MRVI1_uc010rcd.1_Missense_Mutation_p.E584K|MRVI1_uc009ygd.1_Missense_Mutation_p.E475K	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	763	Glu-rich.				platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		TTTAGACCTTCTTGGAATCTG	0.498													14	107					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10615137	10615137	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:10615137G>A	uc010rcc.1	-	17	2463	c.2077C>T	c.(2077-2079)CGC>TGC	p.R693C	uc001miu.2_Intron|MRVI1_uc001miw.2_Missense_Mutation_p.R684C|MRVI1_uc010rcb.1_Missense_Mutation_p.R685C|MRVI1_uc009ygb.1_Missense_Mutation_p.R378C|MRVI1_uc001mix.2_Missense_Mutation_p.R378C|MRVI1_uc001miz.2_Missense_Mutation_p.R602C|MRVI1_uc009ygc.1_Missense_Mutation_p.R602C|MRVI1_uc010rcd.1_Missense_Mutation_p.R487C|MRVI1_uc009ygd.1_Missense_Mutation_p.R378C|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	666					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		ACCCTCCGGCGAGGCATATTC	0.512													13	40					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10645331	10645331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:10645331C>T	uc010rcc.1	-	10	1827	c.1441G>A	c.(1441-1443)GAA>AAA	p.E481K	MRVI1_uc001miw.2_Missense_Mutation_p.E472K|MRVI1_uc010rcb.1_Missense_Mutation_p.E473K|MRVI1_uc009ygb.1_Missense_Mutation_p.E166K|MRVI1_uc001mix.2_Missense_Mutation_p.E166K|MRVI1_uc001miz.2_Missense_Mutation_p.E390K|MRVI1_uc009ygc.1_Missense_Mutation_p.E390K|MRVI1_uc010rcd.1_Missense_Mutation_p.E275K|MRVI1_uc009ygd.1_Missense_Mutation_p.E166K|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	454					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		CTACCTTTTTCCTGCTCAGCT	0.468													19	72					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10647978	10647978	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:10647978G>A	uc010rcc.1	-	9	1289	c.903C>T	c.(901-903)ACC>ACT	p.T301T	MRVI1_uc001miw.2_Silent_p.T292T|MRVI1_uc010rcb.1_Silent_p.T293T|MRVI1_uc009ygb.1_5'UTR|MRVI1_uc001mix.2_5'UTR|MRVI1_uc001miz.2_Silent_p.T210T|MRVI1_uc009ygc.1_Silent_p.T210T|MRVI1_uc010rcd.1_Intron|MRVI1_uc009ygd.1_5'UTR|MRVI1_uc010rce.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	274					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		CTTTGGGTGTGGTCTCGGGGT	0.567													5	25					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10648094	10648094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:10648094C>T	uc010rcc.1	-	9	1173	c.787G>A	c.(787-789)GAC>AAC	p.D263N	MRVI1_uc001miw.2_Missense_Mutation_p.D254N|MRVI1_uc010rcb.1_Missense_Mutation_p.D255N|MRVI1_uc009ygb.1_5'UTR|MRVI1_uc001mix.2_5'UTR|MRVI1_uc001miz.2_Missense_Mutation_p.D172N|MRVI1_uc009ygc.1_Missense_Mutation_p.D172N|MRVI1_uc010rcd.1_Intron|MRVI1_uc009ygd.1_5'UTR|MRVI1_uc010rce.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	236					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		TTCCTCTGGTCATTCTGCTTC	0.532													8	21					0	0	1	0	0
CTR9	9646	broad.mit.edu	37	11	10781819	10781819	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:10781819G>T	uc001mja.2	+	6	841	c.692G>T	c.(691-693)TGC>TTC	p.C231F		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	231	TPR 4.				histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		AATTCCAAATGCGTGGGAGCA	0.403													36	87					1.67305e-13	1.68035e-13	1	1	0
CSNK2A1P	283106	broad.mit.edu	37	11	11373680	11373680	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:11373680C>T	uc001mjp.2	-	1	1225	c.987G>A	c.(985-987)AAG>AAA	p.K329K	GALNTL4_uc001mjo.2_Intron	NM_177559	NP_808227			casein kinase II alpha 1 subunit isoform a												0						GAGCCTGGTCCTTCACAACAG	0.542													25	96					0	0	1	0	0
USP47	55031	broad.mit.edu	37	11	11971966	11971966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:11971966C>T	uc001mjs.2	+	24	4283	c.3520C>T	c.(3520-3522)CAT>TAT	p.H1174Y	USP47_uc001mjr.2_Missense_Mutation_p.H1106Y|USP47_uc009ygi.2_5'UTR	NM_017944	NP_060414	Q96K76	UBP47_HUMAN	ubiquitin specific protease 47	1194					base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		TTTGGATTATCATATTTATGA	0.323													39	106					0	0	1	0	0
MICAL2	9645	broad.mit.edu	37	11	12225853	12225854	+	Silent	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:12225853_12225854CC>TT	uc001mjz.2	+	4	609_610	c.321_322CC>TT	c.(319-324)TACCTG>TATTTG	p.107_108YL>YL	MICAL2_uc010rch.1_Silent_p.107_108YL>YL|MICAL2_uc001mjy.2_Silent_p.107_108YL>YL|MICAL2_uc001mka.2_Silent_p.107_108YL>YL|MICAL2_uc010rci.1_Silent_p.107_108YL>YL|MICAL2_uc001mkb.2_Silent_p.107_108YL>YL|MICAL2_uc001mkc.2_Silent_p.107_108YL>YL	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	107_108	FAD (Potential).					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		AACTTGCCTACCTGGGAGCCAA	0.569													10	56					0	0	1	0	0
MICAL2	9645	broad.mit.edu	37	11	12247800	12247800	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:12247800C>T	uc001mjz.2	+	14	2059	c.1771C>T	c.(1771-1773)CCT>TCT	p.P591S	MICAL2_uc010rch.1_Missense_Mutation_p.P591S|MICAL2_uc001mka.2_Missense_Mutation_p.P591S|MICAL2_uc010rci.1_Missense_Mutation_p.P591S|MICAL2_uc001mkb.2_Missense_Mutation_p.P591S|MICAL2_uc001mkc.2_Missense_Mutation_p.P591S|MICAL2_uc001mkd.2_Missense_Mutation_p.P420S|MICAL2_uc010rcj.1_5'UTR	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	591	CH.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GTTTGGGATCCCTCCAGTGAC	0.512													40	93					0	0	1	0	0
MICAL2	9645	broad.mit.edu	37	11	12270755	12270755	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:12270755C>T	uc001mjz.2	+	22	3097	c.2809C>T	c.(2809-2811)CAT>TAT	p.H937Y	MICAL2_uc010rch.1_Missense_Mutation_p.H747Y|MICAL2_uc001mka.2_Missense_Mutation_p.H937Y|MICAL2_uc010rci.1_Intron|MICAL2_uc001mkb.2_Missense_Mutation_p.H747Y|MICAL2_uc001mkc.2_Intron|MICAL2_uc001mkd.2_Intron|MICAL2_uc010rcj.1_Missense_Mutation_p.H149Y|MICAL2_uc001mkf.2_Intron	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	937						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		ttcagggttccattttcatcc	0.149													25	49					0	0	1	0	0
MICALCL	84953	broad.mit.edu	37	11	12313759	12313759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:12313759C>T	uc001mkg.1	+	2	335	c.44C>T	c.(43-45)TCA>TTA	p.S15L		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	15	Ser-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		cctcttccttcatcgtcttcc	0.333													15	45					0	0	1	0	0
MICALCL	84953	broad.mit.edu	37	11	12313762	12313762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:12313762C>T	uc001mkg.1	+	2	338	c.47C>T	c.(46-48)TCG>TTG	p.S16L		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	16	Ser-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		cttccttcatcgtcttcccat	0.338													15	44					0	0	1	0	0
MICALCL	84953	broad.mit.edu	37	11	12315809	12315809	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:12315809C>T	uc001mkg.1	+	3	1122	c.831C>T	c.(829-831)ATC>ATT	p.I277I		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	277					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		CCAATGCCATCCGAAGGTCTC	0.607													20	56					0	0	1	0	0
MICALCL	84953	broad.mit.edu	37	11	12316366	12316366	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:12316366C>T	uc001mkg.1	+	3	1679	c.1388C>T	c.(1387-1389)CCT>CTT	p.P463L		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	463	Poly-Pro.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		cctcctcctcctcctcctcct	0.433													13	14					0	0	1	0	0
MICALCL	84953	broad.mit.edu	37	11	12341345	12341345	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:12341345C>T	uc001mkg.1	+	4	1820	c.1529C>T	c.(1528-1530)TCC>TTC	p.S510F		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	510					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		CCCCAGCTTTCCTTGCAGTTA	0.517													42	98					0	0	1	0	0
PARVA	55742	broad.mit.edu	37	11	12539227	12539227	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:12539227T>C	uc001mki.2	+	11	987	c.938T>C	c.(937-939)TTC>TCC	p.F313S		NM_018222	NP_060692	Q9NVD7	PARVA_HUMAN	parvin, alpha	313	CH 2.				cell adhesion|cell junction assembly|cilium morphogenesis	actin cytoskeleton|cytosol|focal adhesion	actin binding			breast(3)	3				Epithelial(150;0.00624)		CTGCACAGCTTCTTCCTGACC	0.597													3	13					0	0	1	0	0
RASSF10	644943	broad.mit.edu	37	11	13032633	13032633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:13032633G>A	uc001mkn.1	+	2	1834	c.1834G>A	c.(1834-1836)GAA>AAA	p.E612K		NM_001080521	NP_001073990	A6NK89	RASFA_HUMAN	Ras association (RalGDS/AF-6) domain family	504					signal transduction						0				Epithelial(150;0.00399)		GCCCATGTGCGAATCCCTTGT	0.512													3	11					0	0	1	0	0
PTH	5741	broad.mit.edu	37	11	13514323	13514323	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:13514323G>A	uc001mlb.2	-	2	195	c.80C>T	c.(79-81)TCT>TTT	p.S27F		NM_000315	NP_000306	P01270	PTHY_HUMAN	parathyroid hormone preproprotein	27					bone resorption|cAMP metabolic process|cell-cell signaling|cellular calcium ion homeostasis|cellular macromolecule biosynthetic process|induction of apoptosis by hormones|positive regulation of cAMP biosynthetic process|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|skeletal system development		hormone activity|peptide hormone receptor binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(625;0.00116)|Epithelial(150;0.0357)|LUSC - Lung squamous cell carcinoma(625;0.0836)		TTACTTAACAGATTTCCCATC	0.373													9	31					0	0	1	0	0
FAR1	84188	broad.mit.edu	37	11	13729486	13729486	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:13729486T>C	uc001mld.2	+	4	560	c.405T>C	c.(403-405)CTT>CTC	p.L135L	FAR1_uc009ygp.2_Silent_p.L135L	NM_032228	NP_115604	Q8WVX9	FACR1_HUMAN	fatty acyl CoA reductase 1	135					ether lipid biosynthetic process	integral to membrane|peroxisomal matrix|peroxisomal membrane	protein binding			ovary(1)|skin(1)	2						CGCGACAGCTTATTCTCCTTG	0.353													22	53					0	0	1	0	0
FAR1	84188	broad.mit.edu	37	11	13749204	13749204	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:13749204C>T	uc001mld.2	+	11	1514	c.1359C>T	c.(1357-1359)CTC>CTT	p.L453L		NM_032228	NP_115604	Q8WVX9	FACR1_HUMAN	fatty acyl CoA reductase 1	453					ether lipid biosynthetic process	integral to membrane|peroxisomal matrix|peroxisomal membrane	protein binding			ovary(1)|skin(1)	2						TGTCTGGCCTCCCTGCAGCCA	0.383													24	93					0	0	1	0	0
SPON1	10418	broad.mit.edu	37	11	13984545	13984545	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:13984545G>A	uc001mle.2	+	1	632	c.94G>A	c.(94-96)GAG>AAG	p.E32K		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	32	Reelin.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		CTTCTCCGACGAGACCCTGGA	0.711													4	4					0	0	1	0	0
SPON1	10418	broad.mit.edu	37	11	14156999	14156999	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:14156999G>A	uc001mle.2	+	7	1248	c.710G>A	c.(709-711)GGA>GAA	p.G237E		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	237	Spondin.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		ATCATCGGAGGATCCCACTCC	0.507													20	66					0	0	1	0	0
SPON1	10418	broad.mit.edu	37	11	14284333	14284333	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:14284333G>A	uc001mle.2	+	16	2610	c.2072G>A	c.(2071-2073)CGA>CAA	p.R691Q		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	691	TSP type-1 5.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		CACGTGATTCGAACCCGGATG	0.537													4	27					0	0	1	0	0
SPON1	10418	broad.mit.edu	37	11	14284465	14284465	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:14284465G>A	uc001mle.2	+	16	2742	c.2204G>A	c.(2203-2205)CGA>CAA	p.R735Q		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	735					cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		AGGGAGGCCCGAGAGAGCCGG	0.592													16	39					0	0	1	0	0
SPON1	10418	broad.mit.edu	37	11	14287146	14287146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:14287146G>A	uc001mle.2	+	17	2875	c.2337G>A	c.(2335-2337)ATG>ATA	p.M779I		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	779	TSP type-1 6.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		AACGTTACATGACTGTAAAGA	0.274													15	20					0	0	1	0	0
COPB1	1315	broad.mit.edu	37	11	14504625	14504625	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:14504625G>A	uc001mli.2	-	8	1217	c.910C>T	c.(910-912)CGC>TGC	p.R304C	COPB1_uc001mlg.2_Missense_Mutation_p.R304C|COPB1_uc001mlh.2_Missense_Mutation_p.R304C	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	304	HEAT 4.				COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						TCTATCAAGCGATCCAAAACT	0.308													19	45					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16816494	16816494	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:16816494C>T	uc001mmo.2	-	18	2496	c.2481G>A	c.(2479-2481)GAG>GAA	p.E827E	PLEKHA7_uc010rcu.1_Silent_p.E827E|PLEKHA7_uc010rcv.1_Silent_p.E401E|PLEKHA7_uc001mmn.2_Silent_p.E535E	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	827					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TTCTGAAGTTCTCTTTATTTG	0.483													73	171					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16822601	16822601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:16822601C>T	uc001mmo.2	-	17	2344	c.2329G>A	c.(2329-2331)GAA>AAA	p.E777K	PLEKHA7_uc010rcu.1_Missense_Mutation_p.E777K|PLEKHA7_uc010rcv.1_Missense_Mutation_p.E351K|PLEKHA7_uc001mmn.2_Missense_Mutation_p.E485K	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	777	Potential.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TTCAGGTATTCGTTCCAAGCA	0.498													48	174					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16877459	16877460	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:16877459_16877460GG>AA	uc001mmo.2	-	5	322_323	c.307_308CC>TT	c.(307-309)CCG>TTG	p.P103L	PLEKHA7_uc010rcu.1_Missense_Mutation_p.P103L	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	103					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						ATGTGGATTCGGCCTGTGAGGA	0.535													55	160					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16892697	16892697	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:16892697G>A	uc001mmo.2	-	4	269	c.254C>T	c.(253-255)CCT>CTT	p.P85L	PLEKHA7_uc010rcu.1_Missense_Mutation_p.P85L	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	85	WW 2.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TCCCGTCACAGGATGCCTGAA	0.428													16	69					0	0	1	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17190305	17190305	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17190305A>G	uc001mmq.3	-	1	1050	c.984T>C	c.(982-984)CTT>CTC	p.L328L	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Intron|PIK3C2A_uc001mmr.3_RNA|PIK3C2A_uc010rcx.1_Silent_p.L328L|PIK3C2A_uc009ygv.1_Silent_p.L328L	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	328					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	TTGCCACAGAAAGGGATTTTC	0.398													32	163					0	0	1	0	0
NUCB2	4925	broad.mit.edu	37	11	17323410	17323410	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17323410C>T	uc001mmw.2	+	5	617	c.372C>T	c.(370-372)TCC>TCT	p.S124S	NUCB2_uc001mms.1_Silent_p.S125S|NUCB2_uc001mmt.1_Silent_p.S124S|NUCB2_uc001mmv.1_Silent_p.S124S|NUCB2_uc009ygz.2_Silent_p.S124S	NM_005013	NP_005004	P80303	NUCB2_HUMAN	nucleobindin 2 precursor	124						cytosol|ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|plasma membrane	calcium ion binding|DNA binding				0						AGTTGGATTCCCTTCAAGGTA	0.239													22	64					0	0	1	0	0
NUCB2	4925	broad.mit.edu	37	11	17332408	17332408	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17332408C>A	uc001mmw.2	+	7	765	c.520C>A	c.(520-522)CAT>AAT	p.H174N	NUCB2_uc001mms.1_Missense_Mutation_p.H175N|NUCB2_uc001mmt.1_Missense_Mutation_p.H174N|NUCB2_uc001mmv.1_Missense_Mutation_p.H174N|NUCB2_uc009ygz.2_Missense_Mutation_p.H174N	NM_005013	NP_005004	P80303	NUCB2_HUMAN	nucleobindin 2 precursor	174	By similarity.					cytosol|ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|plasma membrane	calcium ion binding|DNA binding				0						CAAGACTCGTCATGAAGAATT	0.279													47	106					1.21353e-23	1.22044e-23	1	1	0
KCNJ11	3767	broad.mit.edu	37	11	17408585	17408585	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17408585C>T	uc001mna.2	-	1	1622	c.1054G>A	c.(1054-1056)GAC>AAC	p.D352N	KCNJ11_uc001mnb.3_Missense_Mutation_p.D265N	NM_000525	NP_000516	B4DWI4	B4DWI4_HUMAN	potassium inwardly-rectifying channel J11	352						integral to membrane	ATP-activated inward rectifier potassium channel activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0276)|Colorectal(2;0.0633)		AGGCTGTGGTCCTCATCAAGC	0.622											OREG0020810	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	75					0	0	1	0	0
KCNJ11	3767	broad.mit.edu	37	11	17408842	17408842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17408842G>A	uc001mna.2	-	1	1365	c.797C>T	c.(796-798)CCA>CTA	p.P266L	KCNJ11_uc001mnb.3_Missense_Mutation_p.P179L	NM_000525	NP_000516	B4DWI4	B4DWI4_HUMAN	potassium inwardly-rectifying channel J11	266						integral to membrane	ATP-activated inward rectifier potassium channel activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0276)|Colorectal(2;0.0633)		GTCGTAGAGTGGGCTGTTGGC	0.607											OREG0020810	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	76					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17415923	17415923	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17415923C>T	uc001mnc.2	-	37	4561	c.4435G>A	c.(4435-4437)GAG>AAG	p.E1479K		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1479	Cytoplasmic (By similarity).|ABC transporter 2.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CTGAAATTCTCCCCGCCTTCT	0.562													26	70					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17418749	17418749	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17418749C>T	uc001mnc.2	-	32	4105	c.3979G>A	c.(3979-3981)GGG>AGG	p.G1327R		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1327	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CCCAGGAGCCCCTCGTAGCTC	0.637													29	156					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17419886	17419886	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17419886C>T	uc001mnc.2	-	30	3879	c.3753G>A	c.(3751-3753)ATG>ATA	p.M1251I		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1251	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TAGCACTTGCCATTCGGACTT	0.542													11	44					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17449880	17449880	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17449880G>A	uc001mnc.2	-	14	2122	c.1996C>T	c.(1996-1998)CTG>TTG	p.L666L		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	666	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CTGGGGACCAGGCTCTGCAGT	0.657													25	122					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17449891	17449891	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17449891G>A	uc001mnc.2	-	14	2111	c.1985C>T	c.(1984-1986)CCA>CTA	p.P662L		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	662	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GCTCTGCAGTGGGCCGGTGAG	0.662													31	91					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17464325	17464325	+	Silent	SNP	C	T	T	rs61748766	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17464325C>T	uc001mnc.2	-	10	1698	c.1572G>A	c.(1570-1572)ACG>ACA	p.T524T	ABCC8_uc010rcy.1_Silent_p.T523T	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	524	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TCCTGCGGGTCGTCTCCACCC	0.597													20	58					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17474704	17474704	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17474704C>T	uc001mnc.2	-	7	1264	c.1138G>A	c.(1138-1140)GCC>ACC	p.A380T	ABCC8_uc010rcy.1_Missense_Mutation_p.A379T	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	380	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GTTTCAATGGCCACATAGTAG	0.418													27	98					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17482038	17482038	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17482038G>A	uc001mnc.2	-	6	1134	c.1008C>T	c.(1006-1008)CCC>CCT	p.P336P	ABCC8_uc010rcy.1_Silent_p.P335P	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	336	Extracellular (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TGCCTACCTTGGGCTGGAAGA	0.582													42	109					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17483289	17483289	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17483289G>A	uc001mnc.2	-	5	789	c.663C>T	c.(661-663)TTC>TTT	p.F221F	ABCC8_uc010rcy.1_Silent_p.F221F	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	221	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GCAGATTCACGAAGGGCTGCA	0.582													34	93					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17496474	17496474	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17496474G>A	uc001mnc.2	-	2	375	c.249C>T	c.(247-249)TTC>TTT	p.F83F	ABCC8_uc010rcy.1_Silent_p.F83F	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	83	Helical; Name=2; (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	ACACCAGGACGAAGAGCAGCA	0.547													19	50					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17498204	17498204	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17498204G>A	uc001mnc.2	-	1	246	c.120C>T	c.(118-120)CTC>CTT	p.L40L	ABCC8_uc010rcy.1_Silent_p.L40L	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	40	Helical; Name=1; (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	AGGTGATGAAGAGTAGGAAGA	0.672													6	26					0	0	1	0	0
USH1C	10083	broad.mit.edu	37	11	17522690	17522690	+	Missense_Mutation	SNP	G	A	A	rs140313023		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17522690G>A	uc001mnf.2	-	18	1497	c.1388C>T	c.(1387-1389)TCC>TTC	p.S463F	USH1C_uc001mne.2_Missense_Mutation_p.S763F|USH1C_uc009yhb.2_Missense_Mutation_p.S444F|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.S427F	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	463	PDZ 3.				equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						CAGGTCTAAGGATCCCTCCTG	0.592													8	15					0	0	1	0	0
USH1C	10083	broad.mit.edu	37	11	17548851	17548851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17548851C>T	uc001mnf.2	-	5	524	c.415G>A	c.(415-417)GGA>AGA	p.G139R	USH1C_uc001mne.2_Missense_Mutation_p.G139R|USH1C_uc009yhb.2_Missense_Mutation_p.G139R|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.G103R	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	139	PDZ 1.				equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						ATGGAATATCCATTGATCCGG	0.547													22	67					0	0	1	0	0
USH1C	10083	broad.mit.edu	37	11	17554814	17554814	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17554814C>T	uc001mnf.2	-	2	201	c.92G>A	c.(91-93)CGA>CAA	p.R31Q	USH1C_uc001mne.2_Missense_Mutation_p.R31Q|USH1C_uc009yhb.2_Missense_Mutation_p.R31Q|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_5'UTR	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	31					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						GTGGTACATTCGCAGCACATC	0.507													29	75					0	0	1	0	0
KCNC1	3746	broad.mit.edu	37	11	17757553	17757553	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17757553G>A	uc001mnk.3	+	1	59	c.4G>A	c.(4-6)GGC>AGC	p.G2S	KCNC1_uc009yhc.1_Missense_Mutation_p.G2S	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	2	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						CGCCGCGATGGGCCAAGGGGA	0.761													7	8					0	0	1	0	0
KCNC1	3746	broad.mit.edu	37	11	17793286	17793286	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17793286C>T	uc001mnk.3	+	2	700	c.645C>T	c.(643-645)TTC>TTT	p.F215F	KCNC1_uc009yhc.1_Silent_p.F215F	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	215						voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						ACGAGCGCTTCAACCCCATCG	0.567													38	84					0	0	1	0	0
KCNC1	3746	broad.mit.edu	37	11	17793740	17793740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17793740G>A	uc001mnk.3	+	2	1154	c.1099G>A	c.(1099-1101)GAG>AAG	p.E367K	KCNC1_uc009yhc.1_Missense_Mutation_p.E367K	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	367						voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						CTACTACGCCGAGAGGATAGG	0.607													16	51					0	0	1	0	0
KCNC1	3746	broad.mit.edu	37	11	17793946	17793946	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:17793946C>T	uc001mnk.3	+	2	1360	c.1305C>T	c.(1303-1305)ATC>ATT	p.I435I	KCNC1_uc009yhc.1_Silent_p.I435I	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	435	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						TGCCCGTCATCGTGAACAATT	0.567													26	82					0	0	1	0	0
SERGEF	26297	broad.mit.edu	37	11	18026017	18026017	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18026017G>A	uc001mnm.2	-	4	498	c.418C>T	c.(418-420)CGA>TGA	p.R140*	SERGEF_uc009yhd.2_RNA|SERGEF_uc001mnn.2_Nonsense_Mutation_p.R140*|SERGEF_uc010rcz.1_Nonsense_Mutation_p.R26*|SERGEF_uc001mno.1_Nonsense_Mutation_p.R26*	NM_012139	NP_036271	Q9UGK8	SRGEF_HUMAN	deafness locus associated putative guanine	140	RCC1 3.				negative regulation of protein secretion|signal transduction	cytoplasm|nucleus	protein binding|Ran guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1						ACACATCTTCGAGGTCCATGA	0.418													9	22					0	0	1	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159409	18159409	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18159409C>T	uc001mnu.2	+	3	1021	c.660C>T	c.(658-660)CTC>CTT	p.L220L		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	220	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						CCATCCTCCTCACAGTGCTGG	0.552													28	77					0	0	1	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159571	18159571	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18159571C>T	uc001mnu.2	+	3	1183	c.822C>T	c.(820-822)TTC>TTT	p.F274F		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	274	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TTTACTTCTTCGTGGGCTCCT	0.512													48	105					0	0	1	0	0
HPS5	11234	broad.mit.edu	37	11	18320445	18320445	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18320445G>A	uc001mod.1	-	10	1336	c.1058C>T	c.(1057-1059)TCC>TTC	p.S353F	HPS5_uc001moe.1_Missense_Mutation_p.S239F|HPS5_uc001mof.1_Missense_Mutation_p.S239F	NM_181507	NP_852608	Q9UPZ3	HPS5_HUMAN	Hermansky-Pudlak syndrome 5 isoform a	353						cytosol				ovary(1)|pancreas(1)|skin(1)	3						AGATATCAGGGAGAGATGTGA	0.458									Hermansky-Pudlak_syndrome				34	98					0	0	1	0	0
LDHA	3939	broad.mit.edu	37	11	18425294	18425294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18425294C>T	uc001mok.3	+	6	918	c.646C>T	c.(646-648)CCA>TCA	p.P216S	LDHA_uc010rdc.1_Missense_Mutation_p.P158S|LDHA_uc009yhn.2_Missense_Mutation_p.P215S|LDHA_uc009yho.2_Missense_Mutation_p.P43S|LDHA_uc001mol.3_Missense_Mutation_p.P216S|LDHA_uc010rdd.1_Missense_Mutation_p.P245S	NM_005566	NP_005557	P00338	LDHA_HUMAN	lactate dehydrogenase A isoform 1	216					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity|protein binding			central_nervous_system(3)	3					NADH(DB00157)	GACTCTGCACCCAGATTTAGG	0.383													11	111					0	0	1	0	0
IGSF22	283284	broad.mit.edu	37	11	18735519	18735519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18735519C>T	uc009yht.2	-	14	2165	c.1975G>A	c.(1975-1977)GGG>AGG	p.G659R	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	659	Ig-like 4.									ovary(4)|large_intestine(2)|kidney(1)	7						TGGTCTTCCCCGCGCTCCATG	0.592													28	76					0	0	1	0	0
IGSF22	283284	broad.mit.edu	37	11	18736157	18736157	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18736157C>T	uc009yht.2	-	12	1736	c.1546G>A	c.(1546-1548)GTG>ATG	p.V516M	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	516										ovary(4)|large_intestine(2)|kidney(1)	7						CCGCTCTTCACTGTGGCCAGA	0.607													21	53					0	0	1	0	0
PTPN5	84867	broad.mit.edu	37	11	18751216	18751216	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18751216G>A	uc001mpd.2	-	13	1910	c.1479C>T	c.(1477-1479)ATC>ATT	p.I493I	PTPN5_uc001mpb.2_Silent_p.I461I|PTPN5_uc001mpc.2_Silent_p.I493I|PTPN5_uc001mpe.2_Silent_p.I461I|PTPN5_uc010rdj.1_Silent_p.I437I|PTPN5_uc001mpf.2_Silent_p.I469I|PTPN5_uc010rdk.1_Silent_p.I438I	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	493	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						TGCAGTGGACGATGATGGGGG	0.746													8	25					0	0	1	0	0
PTPN5	84867	broad.mit.edu	37	11	18754784	18754784	+	Missense_Mutation	SNP	C	T	T	rs139371305		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18754784C>T	uc001mpd.2	-	11	1647	c.1216G>A	c.(1216-1218)GAG>AAG	p.E406K	PTPN5_uc001mpb.2_Missense_Mutation_p.E374K|PTPN5_uc001mpc.2_Missense_Mutation_p.E406K|PTPN5_uc001mpe.2_Missense_Mutation_p.E374K|PTPN5_uc010rdj.1_Missense_Mutation_p.E350K|PTPN5_uc001mpf.2_Missense_Mutation_p.E382K|PTPN5_uc010rdk.1_Missense_Mutation_p.E351K	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	406	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						GTCCCTACCTCGTTCATCTCC	0.403													33	82					0	0	1	0	0
PTPN5	84867	broad.mit.edu	37	11	18762339	18762339	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18762339C>T	uc001mpd.2	-	8	1157	c.726G>A	c.(724-726)AGG>AGA	p.R242R	PTPN5_uc001mpb.2_Silent_p.R210R|PTPN5_uc001mpc.2_Silent_p.R242R|PTPN5_uc001mpe.2_Silent_p.R210R|PTPN5_uc010rdj.1_Silent_p.R186R|PTPN5_uc001mpf.2_Silent_p.R218R|PTPN5_uc010rdk.1_Silent_p.R187R	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	242						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						TGGAACCCCTCCTGGAAGGAC	0.627													9	30					0	0	1	0	0
PTPN5	84867	broad.mit.edu	37	11	18763838	18763838	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18763838G>A	uc001mpd.2	-	7	1127	c.696C>T	c.(694-696)CTC>CTT	p.L232L	PTPN5_uc001mpb.2_Silent_p.L200L|PTPN5_uc001mpc.2_Silent_p.L232L|PTPN5_uc001mpe.2_Silent_p.L200L|PTPN5_uc010rdj.1_Silent_p.L176L|PTPN5_uc001mpf.2_Silent_p.L208L|PTPN5_uc010rdk.1_Silent_p.L177L	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	232						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						ACTTGACGGTGAGTGAGGTGG	0.592													44	104					0	0	1	0	0
PTPN5	84867	broad.mit.edu	37	11	18764911	18764911	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18764911G>A	uc001mpd.2	-	5	788	c.357C>T	c.(355-357)CTC>CTT	p.L119L	PTPN5_uc001mpb.2_Intron|PTPN5_uc001mpc.2_Silent_p.L119L|PTPN5_uc001mpe.2_Intron|PTPN5_uc010rdj.1_Intron|PTPN5_uc001mpf.2_Silent_p.L95L|PTPN5_uc010rdk.1_Silent_p.L64L	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	119						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						AAGAGGAGACGAGGTTTGTGG	0.592													74	46					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955590	18955590	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18955590C>T	uc001mpg.2	-	1	960	c.742G>A	c.(742-744)GTC>ATC	p.V248I		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	248	Extracellular (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CAAAATAAGACTTCCCTGTCC	0.473													17	40					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955629	18955629	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18955629G>A	uc001mpg.2	-	1	921	c.703C>T	c.(703-705)CAG>TAG	p.Q235*		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	235	Helical; Name=6; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						AGGAAAAACTGAATGCCAAAG	0.478													17	37					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955761	18955761	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18955761G>A	uc001mpg.2	-	1	789	c.571C>T	c.(571-573)CTC>TTC	p.L191F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	191	Helical; Name=5; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GACCCACAGAGAACCACACAT	0.507													21	52					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956040	18956040	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18956040G>A	uc001mpg.2	-	1	510	c.292C>T	c.(292-294)CTC>TTC	p.L98F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	98	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						ACAGGATAGAGGATTTTAGAG	0.532													50	139					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956173	18956173	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18956173G>A	uc001mpg.2	-	1	377	c.159C>T	c.(157-159)GGC>GGT	p.G53G		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	53	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GCATGCGGCAGCCCAGGAGCC	0.562													61	140					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956201	18956201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18956201C>T	uc001mpg.2	-	1	349	c.131G>A	c.(130-132)GGA>GAA	p.G44E		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	44	Helical; Name=1; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						AACTGCGTTTCCTGTCAGCCC	0.567													70	158					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956481	18956481	+	Translation_Start_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:18956481C>T	uc001mpg.2	-	1	69	c.-149G>A	c.(-151--147)AGGTG>AGATG			NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1						acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						gaataagtcacctatcaaaag	0.055													5	16					0	0	1	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077169	19077169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:19077169G>A	uc001mph.2	-	2	869	c.781C>T	c.(781-783)CAT>TAT	p.H261Y		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	261	Extracellular (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						GAAACTGGATGAATATGACAA	0.483													34	87					0	0	1	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077314	19077314	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:19077314G>A	uc001mph.2	-	2	724	c.636C>T	c.(634-636)GGC>GGT	p.G212G		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	212	Cytoplasmic (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						GACCCCTGGAGCCACAGAGGA	0.547													26	43					0	0	1	0	0
CSRP3	8048	broad.mit.edu	37	11	19207763	19207763	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:19207763C>T	uc001mpk.2	-	4	531	c.414G>A	c.(412-414)AAG>AAA	p.K138K		NM_003476	NP_003467	P50461	CSRP3_HUMAN	cysteine and glycine-rich protein 3	138	LIM zinc-binding 2.				cell differentiation|skeletal muscle tissue development	cytoskeleton|nucleus	protein binding|zinc ion binding				0						AAGGTCTTACCTTGCCACCTC	0.498													21	83					0	0	1	0	0
E2F8	79733	broad.mit.edu	37	11	19253875	19253875	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:19253875G>A	uc001mpm.2	-	7	1494	c.972C>T	c.(970-972)AGC>AGT	p.S324S	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Silent_p.S324S	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	324	Potential.				cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						TAAGATCCAGGCTACTCAGAA	0.363													56	131					0	0	1	0	0
NAV2	89797	broad.mit.edu	37	11	19955098	19955098	+	Silent	SNP	C	T	T	rs113762718		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:19955098C>T	uc010rdm.1	+	8	1738	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	NAV2_uc001mpp.2_Silent_p.F372F|NAV2_uc001mpr.3_Silent_p.F436F	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	459						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						TGCCCAGCTTCGAAGAGAGCG	0.612													33	75					0	0	1	0	0
NAV2	89797	broad.mit.edu	37	11	20129252	20129252	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20129252C>T	uc001mpr.3	+	36	7254	c.6893C>T	c.(6892-6894)TCG>TTG	p.S2298L	NAV2_uc001mpp.2_Missense_Mutation_p.S2231L|NAV2_uc009yhx.2_Missense_Mutation_p.S1359L|NAV2_uc009yhz.2_Missense_Mutation_p.S940L|NAV2_uc001mpu.2_Missense_Mutation_p.S733L|NAV2_uc001mpv.2_Missense_Mutation_p.S57L	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	2354						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						GTGGACGGCTCGAGAGTGTGG	0.547													134	318					0	0	1	0	0
DBX1	120237	broad.mit.edu	37	11	20181561	20181561	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20181561C>T	uc001mpw.1	-	1	310	c.310G>A	c.(310-312)GAG>AAG	p.E104K		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	104					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AACGTCGTCTCGCTGGCAGGG	0.677													5	12					0	0	1	0	0
DBX1	120237	broad.mit.edu	37	11	20181577	20181577	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20181577G>A	uc001mpw.1	-	1	294	c.294C>T	c.(292-294)GCC>GCT	p.A98A		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	98					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CAGGGGAGAAGGCAGTCGGCG	0.706													5	8					0	0	1	0	0
HTATIP2	10553	broad.mit.edu	37	11	20403763	20403763	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20403763C>T	uc009yia.1	+	5	547	c.481C>T	c.(481-483)CGT>TGT	p.R161C	HTATIP2_uc009yib.1_Missense_Mutation_p.R161C|HTATIP2_uc001mpx.2_Missense_Mutation_p.R195C|HTATIP2_uc001mpz.2_Missense_Mutation_p.R161C	NM_006410	NP_006401	Q9BUP3	HTAI2_HUMAN	HIV-1 Tat interactive protein 2, 30kDa isoform	161					angiogenesis|anti-apoptosis|apoptosis|cell differentiation|cellular amino acid metabolic process|induction of apoptosis|interspecies interaction between organisms|nuclear import|regulation of angiogenesis|regulation of transcription from RNA polymerase II promoter	cytoplasm|nuclear envelope	NAD binding|oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|protein binding|transcription coactivator activity				0						AAAATTTGATCGTTACTCTGT	0.343													25	53					0	0	1	0	0
HTATIP2	10553	broad.mit.edu	37	11	20404709	20404709	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20404709C>T	uc009yia.1	+	6	753	c.687C>T	c.(685-687)GCC>GCT	p.A229A	HTATIP2_uc009yib.1_Silent_p.A229A|HTATIP2_uc001mpx.2_Silent_p.A263A|HTATIP2_uc001mpz.2_Silent_p.A229A	NM_006410	NP_006401	Q9BUP3	HTAI2_HUMAN	HIV-1 Tat interactive protein 2, 30kDa isoform	229					angiogenesis|anti-apoptosis|apoptosis|cell differentiation|cellular amino acid metabolic process|induction of apoptosis|interspecies interaction between organisms|nuclear import|regulation of angiogenesis|regulation of transcription from RNA polymerase II promoter	cytoplasm|nuclear envelope	NAD binding|oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|protein binding|transcription coactivator activity				0						AGAACAAGGCCATCCATGACC	0.493													7	25					0	0	1	0	0
PRMT3	10196	broad.mit.edu	37	11	20483679	20483679	+	Missense_Mutation	SNP	C	T	T	rs142036289		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20483679C>T	uc001mqb.2	+	12	1443	c.1226C>T	c.(1225-1227)CCG>CTG	p.P409L	PRMT3_uc001mqc.2_Missense_Mutation_p.P332L|PRMT3_uc010rdn.1_Missense_Mutation_p.P347L	NM_005788	NP_005779	O60678	ANM3_HUMAN	protein arginine methyltransferase 3 isoform 1	409							zinc ion binding				0						GTTTTAGATCCGAAGACTCTT	0.348													69	174					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20623038	20623038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20623038C>T	uc001mqd.2	+	2	640	c.367C>T	c.(367-369)CCT>TCT	p.P123S	SLC6A5_uc009yic.2_5'UTR	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	123	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	CTGTAAGATCCCTTTTCTGCG	0.672													7	18					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20625847	20625847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20625847G>A	uc001mqd.2	+	3	829	c.556G>A	c.(556-558)GAT>AAT	p.D186N	SLC6A5_uc009yic.2_Intron	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	186	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	CGAGCAAGGGGATGAGAATAA	0.607													44	112					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20636224	20636224	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20636224G>A	uc001mqd.2	+	6	1259	c.986_splice	c.e6-1	p.D329_splice	SLC6A5_uc009yic.2_Splice_Site_p.D94_splice	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter						synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	CTCCTAAACAGATTCCTGTGT	0.393													38	105					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20649578	20649578	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20649578G>A	uc001mqd.2	+	9	1721	c.1448G>A	c.(1447-1449)GGA>GAA	p.G483E	SLC6A5_uc009yic.2_Missense_Mutation_p.G248E	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	483	Helical; Name=6; (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	GCTGCATGGGGAGGCCTGATC	0.473													19	93					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20652291	20652291	+	Silent	SNP	C	T	T	rs143680068	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20652291C>T	uc001mqd.2	+	10	1827	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	SLC6A5_uc009yic.2_Silent_p.F283F	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	518	Helical; Name=7; (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	TTGCCGGCTTCGTCATCTTCT	0.493													35	100					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20658726	20658726	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20658726C>T	uc001mqd.2	+	12	2019	c.1746C>T	c.(1744-1746)ACC>ACT	p.T582T	SLC6A5_uc009yic.2_Silent_p.T347T	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	582				T -> S (in Ref. 2; AAD27892).	synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	AGTTTGCCACCATCGAGACCA	0.493													33	125					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20676384	20676384	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20676384G>A	uc001mqd.2	+	16	2637	c.2364G>A	c.(2362-2364)GTG>GTA	p.V788V	SLC6A5_uc009yic.2_Silent_p.V553V	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	788	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	AACTGCCAGTGAAGGATTTGG	0.532													64	143					0	0	1	0	0
NELL1	4745	broad.mit.edu	37	11	20959375	20959375	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:20959375G>A	uc001mqe.2	+	10	1194	c.1041G>A	c.(1039-1041)CGG>CGA	p.R347R	NELL1_uc001mqf.2_Silent_p.R347R|NELL1_uc009yid.2_Silent_p.R375R|NELL1_uc010rdo.1_Silent_p.R290R|NELL1_uc010rdp.1_Silent_p.R107R	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	347	VWFC 2.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						AAGGCCAGCGGATTTTAACCA	0.408													29	78					0	0	1	0	0
NELL1	4745	broad.mit.edu	37	11	21556024	21556024	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:21556024G>A	uc001mqe.2	+	16	1903	c.1750G>A	c.(1750-1752)GAT>AAT	p.D584N	NELL1_uc001mqf.2_Intron|NELL1_uc009yid.2_Missense_Mutation_p.D612N|NELL1_uc010rdo.1_Missense_Mutation_p.D527N|NELL1_uc010rdp.1_Intron|NELL1_uc001mqh.2_Silent_p.T193T	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	584	EGF-like 5; calcium-binding (Potential).				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						TTTCCATGACGATGGGACCTA	0.532													6	76					0	0	1	0	0
ANO5	203859	broad.mit.edu	37	11	22291883	22291883	+	Nonsense_Mutation	SNP	C	T	T	rs146341538		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:22291883C>T	uc001mqi.2	+	18	2241	c.1924C>T	c.(1924-1926)CGA>TGA	p.R642*	ANO5_uc001mqj.2_Nonsense_Mutation_p.R641*	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	642	Extracellular (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						GTGGAGACGCCGAAAAGCTCG	0.418													22	81					0	0	1	0	0
GAS2	2620	broad.mit.edu	37	11	22759280	22759280	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:22759280C>T	uc009yie.2	+	5	745	c.439C>T	c.(439-441)CTC>TTC	p.L147F	GAS2_uc001mqm.2_Missense_Mutation_p.L147F|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Missense_Mutation_p.L147F	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	147	CH.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						AGAAGTGTGTCTCTGTCTGCT	0.488													37	82					0	0	1	0	0
LUZP2	338645	broad.mit.edu	37	11	24759824	24759824	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:24759824G>A	uc001mqs.2	+	4	543	c.309G>A	c.(307-309)GAG>GAA	p.E103E	LUZP2_uc009yif.2_Silent_p.E17E|LUZP2_uc009yig.2_Silent_p.E103E	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	103	Potential.					extracellular region				ovary(1)|skin(1)	2						AGACATCAGAGAAAGCAGAAA	0.373													15	37					0	0	1	0	0
LUZP2	338645	broad.mit.edu	37	11	25004683	25004683	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:25004683G>A	uc001mqs.2	+	9	843	c.609G>A	c.(607-609)ATG>ATA	p.M203I	LUZP2_uc009yif.2_Missense_Mutation_p.M117I|LUZP2_uc009yig.2_Missense_Mutation_p.M161I	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	203	Potential.					extracellular region				ovary(1)|skin(1)	2						AGTCACAGATGAAAGCAATGA	0.408													60	138					0	0	1	0	0
MUC15	143662	broad.mit.edu	37	11	26586715	26586715	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26586715T>A	uc001mqx.2	-	2	957	c.691A>T	c.(691-693)AAA>TAA	p.K231*	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Nonsense_Mutation_p.K258*|MUC15_uc001mqy.2_Nonsense_Mutation_p.K258*	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	231	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TATTTACCTTTTTGGGGATCT	0.338													23	105					0	0	1	0	0
MUC15	143662	broad.mit.edu	37	11	26586932	26586932	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26586932C>T	uc001mqx.2	-	2	740	c.474G>A	c.(472-474)GTG>GTA	p.V158V	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Silent_p.V185V|MUC15_uc001mqy.2_Silent_p.V185V	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	158	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						CAGGAGTTTTCACGGTGTCAT	0.448													49	120					0	0	1	0	0
ANO3	63982	broad.mit.edu	37	11	26619945	26619945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26619945G>A	uc001mqt.3	+	15	1626	c.1481G>A	c.(1480-1482)AGG>AAG	p.R494K	ANO3_uc010rdr.1_Missense_Mutation_p.R478K|ANO3_uc010rds.1_Missense_Mutation_p.R333K|ANO3_uc010rdt.1_Missense_Mutation_p.R348K	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	494	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AAAAGGAGAAGGAGTATACTG	0.353													10	119					0	0	1	0	0
ANO3	63982	broad.mit.edu	37	11	26655803	26655803	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26655803C>T	uc001mqt.3	+	19	2071	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	ANO3_uc010rdr.1_Silent_p.F626F|ANO3_uc010rds.1_Silent_p.F481F|ANO3_uc010rdt.1_Silent_p.F496F	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	642	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGAAGATGTTCCTCTTCCAGT	0.353													7	57					0	0	1	0	0
ANO3	63982	broad.mit.edu	37	11	26663466	26663466	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26663466G>A	uc001mqt.3	+	22	2310	c.2165G>A	c.(2164-2166)CGA>CAA	p.R722Q	ANO3_uc010rdr.1_Missense_Mutation_p.R706Q|ANO3_uc010rds.1_Missense_Mutation_p.R561Q|ANO3_uc010rdt.1_Missense_Mutation_p.R576Q	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	722	Extracellular (Potential).					chloride channel complex	chloride channel activity	p.R722Q(1)		ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGGTGGTCACGACATAAAATC	0.428													22	88					0	0	1	0	0
ANO3	63982	broad.mit.edu	37	11	26681985	26681985	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26681985G>A	uc001mqt.3	+	27	3085	c.2940G>A	c.(2938-2940)TGG>TGA	p.W980*	ANO3_uc010rdr.1_Nonsense_Mutation_p.W964*|ANO3_uc010rds.1_Nonsense_Mutation_p.W819*|ANO3_uc010rdt.1_Nonsense_Mutation_p.W834*	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	980	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ACCATGAATGGCCTTAGTTGA	0.418													26	86					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26695000	26695000	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26695000C>T	uc001mra.2	-	14	1969	c.1656G>A	c.(1654-1656)AAG>AAA	p.K552K	SLC5A12_uc001mrb.2_RNA	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	552	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						GTGTTTTGTACTTCTTAGACC	0.383													59	140					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26695003	26695003	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26695003C>T	uc001mra.2	-	14	1966	c.1653G>A	c.(1651-1653)AAG>AAA	p.K551K	SLC5A12_uc001mrb.2_RNA	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	551	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						TTTTGTACTTCTTAGACCAAA	0.388													54	143					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26718782	26718782	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26718782G>A	uc001mra.2	-	8	1282	c.969C>T	c.(967-969)GTC>GTT	p.V323V	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Silent_p.V323V	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	323	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						ATATCTCCATGACAAAGTACG	0.323													40	81					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26725395	26725395	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26725395C>T	uc001mra.2	-	5	938	c.625G>A	c.(625-627)GGA>AGA	p.G209R	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Missense_Mutation_p.G209R	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	209	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						TTGTGGAATCCCCCAGCATGA	0.398													62	169					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26725472	26725472	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26725472C>T	uc001mra.2	-	5	861	c.548G>A	c.(547-549)TGG>TAG	p.W183*	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Nonsense_Mutation_p.W183*	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	183	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						TGCATCTGTCCACACCACTGC	0.433													43	141					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26743007	26743007	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26743007G>A	uc001mra.2	-	1	568	c.255C>T	c.(253-255)TTC>TTT	p.F85F	SLC5A12_uc001mrb.2_Intron|SLC5A12_uc001mrc.3_Silent_p.F85F	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	85	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						GGTAAGCAATGAAGAAGACTA	0.488													22	70					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26743045	26743045	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26743045C>T	uc001mra.2	-	1	530	c.217G>A	c.(217-219)GAA>AAA	p.E73K	SLC5A12_uc001mrb.2_Intron|SLC5A12_uc001mrc.3_Missense_Mutation_p.E73K	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	73	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						CGGTAGACTTCAGAAGGGGTC	0.512													23	59					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26743049	26743049	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26743049A>G	uc001mra.2	-	1	526	c.213T>C	c.(211-213)CCT>CCC	p.P71P	SLC5A12_uc001mrb.2_Intron|SLC5A12_uc001mrc.3_Silent_p.P71P	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	71	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						AGACTTCAGAAGGGGTCCCCA	0.522													21	63					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26743056	26743056	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26743056C>T	uc001mra.2	-	1	519	c.206G>A	c.(205-207)GGG>GAG	p.G69E	SLC5A12_uc001mrb.2_Intron|SLC5A12_uc001mrc.3_Missense_Mutation_p.G69E	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	69	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						AGAAGGGGTCCCCAGGACCGT	0.527													20	55					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26743149	26743149	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:26743149G>A	uc001mra.2	-	1	426	c.113C>T	c.(112-114)TCC>TTC	p.S38F	SLC5A12_uc001mrb.2_Intron|SLC5A12_uc001mrc.3_Missense_Mutation_p.S38F	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	38	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						GAACTCTCGGGAAGTTGCCTT	0.498													80	38					0	0	1	0	0
FIBIN	387758	broad.mit.edu	37	11	27016596	27016596	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:27016596G>A	uc001mrd.2	+	1	969	c.523G>A	c.(523-525)GAG>AAG	p.E175K		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	175						extracellular region|Golgi apparatus					0						CCTGCTGAAGGAGACACTGGA	0.572													27	63					0	0	1	0	0
BBOX1	8424	broad.mit.edu	37	11	27077035	27077035	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:27077035C>T	uc001mre.1	+	3	426	c.58C>T	c.(58-60)CTC>TTC	p.L20F	BBOX1_uc009yih.1_Missense_Mutation_p.L20F|BBOX1_uc001mrg.1_Missense_Mutation_p.L20F	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	20					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	GATGCAGATCCTCTGGTATGA	0.498													26	60					0	0	1	0	0
LGR4	55366	broad.mit.edu	37	11	27389935	27389935	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:27389935G>A	uc001mrj.3	-	18	2820	c.2335C>T	c.(2335-2337)CCC>TCC	p.P779S	LGR4_uc001mrk.3_Missense_Mutation_p.P755S	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	779	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						ATTATTTCGGGGCTGATAGAG	0.403													30	105					0	0	1	0	0
LGR4	55366	broad.mit.edu	37	11	27390186	27390186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:27390186G>A	uc001mrj.3	-	18	2569	c.2084C>T	c.(2083-2085)CCA>CTA	p.P695L	LGR4_uc001mrk.3_Missense_Mutation_p.P671L	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	695	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						TGTAGGAAATGGCAAACAAAG	0.428													20	84					0	0	1	0	0
KCNA4	3739	broad.mit.edu	37	11	30032327	30032327	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:30032327C>T	uc001msk.2	-	2	3051	c.1899G>A	c.(1897-1899)GGG>GGA	p.G633G		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	633						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CACTGTCATCCCCCTTTCCCT	0.478													31	135					0	0	1	0	0
KCNA4	3739	broad.mit.edu	37	11	30032408	30032408	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:30032408C>T	uc001msk.2	-	2	2970	c.1818G>A	c.(1816-1818)GGG>GGA	p.G606G		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	606						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTGACTTGTCCCCCAGGGAAG	0.468													29	57					0	0	1	0	0
KCNA4	3739	broad.mit.edu	37	11	30032457	30032457	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:30032457G>A	uc001msk.2	-	2	2921	c.1769C>T	c.(1768-1770)CCC>CTC	p.P590L		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	590						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CAAATTAGAGGGGAGGTATGG	0.433													18	46					0	0	1	0	0
KCNA4	3739	broad.mit.edu	37	11	30032617	30032617	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:30032617C>T	uc001msk.2	-	2	2761	c.1609G>A	c.(1609-1611)GGC>AGC	p.G537S		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	537						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ACAATCTTGCCCCCTACAGTG	0.498													9	66					0	0	1	0	0
KCNA4	3739	broad.mit.edu	37	11	30033484	30033484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:30033484G>A	uc001msk.2	-	2	1894	c.742C>T	c.(742-744)CCC>TCC	p.P248S		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	248						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ATATCAAAGGGGACATTGACT	0.488													8	137					0	0	1	0	0
KCNA4	3739	broad.mit.edu	37	11	30034149	30034149	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:30034149C>T	uc001msk.2	-	2	1229	c.77G>A	c.(76-78)CGG>CAG	p.R26Q		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	26						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTCCCGGGCCCGGGCCTGGGC	0.627													27	132					0	0	1	0	0
FSHB	2488	broad.mit.edu	37	11	30255248	30255248	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:30255248C>T	uc001msl.2	+	3	360	c.291C>T	c.(289-291)GCC>GCT	p.A97A	FSHB_uc001msm.2_Silent_p.A97A|FSHB_uc001msn.2_Silent_p.A97A	NM_000510	NP_000501	P01225	FSHB_HUMAN	follicle stimulating hormone, beta polypeptide	97					cellular nitrogen compound metabolic process|female gamete generation|female pregnancy|ovarian follicle development|peptide hormone processing|progesterone biosynthetic process|spermatogenesis|transforming growth factor beta receptor signaling pathway	cytoplasm|extracellular region|soluble fraction	follicle-stimulating hormone activity|protein heterodimerization activity			ovary(3)	3					Follitropin beta(DB00066)|Thyrotropin Alfa(DB00024)|Urofollitropin(DB00094)	ACCCAGTGGCCACCCAGTGTC	0.498													17	36					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	30938508	30938508	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:30938508C>T	uc001mss.1	-	4		c.464G>A			uc009yjk.1_Missense_Mutation_p.E569K					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		TGTGAAGTTTCCTGCCAGGCA	0.418													21	52					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	30938550	30938550	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:30938550G>A	uc001mss.1	-	4		c.422C>T			uc009yjk.1_Nonsense_Mutation_p.R555*					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		GCCTTCATTCGAAGATGAGCT	0.413													35	57					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	31086160	31086160	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:31086160C>T	uc009yjk.1	-	8	860	c.791G>A	c.(790-792)AGT>AAT	p.S264N	uc009yjl.1_Missense_Mutation_p.S192N|DCDC1_uc001msu.1_Missense_Mutation_p.S435N					RecName: Full=Doublecortin domain-containing protein 5;																		GTTGCTGGCACTTTCTTGCAG	0.413													33	36					0	0	1	0	0
ELP4	26610	broad.mit.edu	37	11	31653928	31653928	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:31653928C>T	uc001mtb.2	+	7	938	c.903C>T	c.(901-903)ATC>ATT	p.I301I	ELP4_uc001mta.1_RNA|ELP4_uc001mtc.2_Silent_p.I301I|ELP4_uc010rdz.1_Silent_p.I302I	NM_019040	NP_061913	Q96EB1	ELP4_HUMAN	elongation protein 4 homolog	301					histone acetylation|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|Elongator holoenzyme complex|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|prostate(1)	3	Lung SC(675;0.225)					CCTGCATCATCACAATGCCAA	0.338													43	74					0	0	1	0	0
RCN1	5954	broad.mit.edu	37	11	32125929	32125929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:32125929G>A	uc010reb.1	+	6	1173	c.907G>A	c.(907-909)GAG>AAG	p.E303K	RCN1_uc010rea.1_Missense_Mutation_p.E252K|RCN1_uc001mtk.2_Missense_Mutation_p.E137K	NM_002901	NP_002892	Q15293	RCN1_HUMAN	reticulocalbin 1 precursor	303	6; possibly ancestral (Potential).|EF-hand 6.					endoplasmic reticulum lumen	calcium ion binding			large_intestine(1)	1	Lung SC(675;0.225)					GCTAACTAAAGAGGAAATATT	0.398													10	19					0	0	1	0	0
WIT1	51352	broad.mit.edu	37	11	32460452	32460452	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:32460452G>A	uc010rec.1	+	2		c.1170G>A			WIT1_uc010red.1_RNA|WIT1_uc010ree.1_RNA	NR_023920				full-length cDNA clone CS0DC024YP12 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0	Breast(20;0.247)					ACAGCCCCTGGAAAACCATGT	0.368													11	23					0	0	1	0	0
CCDC73	493860	broad.mit.edu	37	11	32636038	32636038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:32636038C>T	uc001mtv.2	-	16	1870	c.1826G>A	c.(1825-1827)GGG>GAG	p.G609E		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	609										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TTCTCGAGTCCCTGGAAGCAA	0.333													14	36					0	0	1	0	0
CCDC73	493860	broad.mit.edu	37	11	32636195	32636195	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:32636195C>T	uc001mtv.2	-	16	1713	c.1669G>A	c.(1669-1671)GGA>AGA	p.G557R		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	557										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					ACATCTAATCCTCTGGTTCTT	0.294													11	30					0	0	1	0	0
CCDC73	493860	broad.mit.edu	37	11	32657319	32657319	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:32657319C>T	uc001mtv.2	-	14	1152	c.1108G>A	c.(1108-1110)GAA>AAA	p.E370K	CCDC73_uc001mtw.1_Missense_Mutation_p.E360K	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	370	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					ATATGAGTTTCTTTAAGGGAT	0.254													11	27					0	0	1	0	0
QSER1	79832	broad.mit.edu	37	11	32955532	32955532	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:32955532C>T	uc001mty.2	+	4	2608	c.2341C>T	c.(2341-2343)CAT>TAT	p.H781Y	QSER1_uc001mtz.1_Missense_Mutation_p.H542Y|QSER1_uc001mua.2_Missense_Mutation_p.H286Y	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	781	Gln-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					CAATGGTGATCATTCTCAGCA	0.403													33	108					0	0	1	0	0
HIPK3	10114	broad.mit.edu	37	11	33374802	33374802	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:33374802C>T	uc001mul.1	+	17	3606	c.3336C>T	c.(3334-3336)CTC>CTT	p.L1112L	HIPK3_uc001mum.1_Silent_p.L1091L|HIPK3_uc009yjv.1_Silent_p.L1091L	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	1112					anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						ATACACACCTCGGAGGACAGC	0.507													16	87					0	0	1	0	0
C11orf41	25758	broad.mit.edu	37	11	33612897	33612897	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:33612897C>T	uc001mup.3	+	11	3932	c.3808C>T	c.(3808-3810)CCT>TCT	p.P1270S	C11orf41_uc001mun.1_Intron	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	1264						integral to membrane				ovary(2)	2						TAGAGATGCTCCTCAGGAAAG	0.557													5	46					0	0	1	0	0
FBXO3	26273	broad.mit.edu	37	11	33777415	33777415	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:33777415G>A	uc001muz.2	-	5	608	c.580C>T	c.(580-582)CTC>TTC	p.L194F	FBXO3_uc010rej.1_5'Flank|FBXO3_uc001muy.2_Missense_Mutation_p.L81F|FBXO3_uc009ykb.2_RNA|FBXO3_uc001mva.1_Missense_Mutation_p.L194F|FBXO3_uc001mvb.1_Missense_Mutation_p.L189F|FBXO3_uc010rek.1_Intron	NM_012175	NP_036307	Q9UK99	FBX3_HUMAN	F-box only protein 3 isoform 1	194					proteolysis	nucleus	ubiquitin-protein ligase activity			pancreas(1)	1		Lung NSC(402;0.0804)		BRCA - Breast invasive adenocarcinoma(625;0.00315)|Lung(977;0.00488)|LUSC - Lung squamous cell carcinoma(625;0.008)		GTTAAAGGGAGACAGTATTTC	0.448													30	38					0	0	1	0	0
LMO2	4005	broad.mit.edu	37	11	33880946	33880946	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:33880946C>T	uc001mve.2	-	3	872	c.433G>A	c.(433-435)GAA>AAA	p.E145K	LMO2_uc001mvc.2_Missense_Mutation_p.E138K|LMO2_uc001mvd.2_Missense_Mutation_p.E138K|LMO2_uc010rel.1_Missense_Mutation_p.E145K|LMO2_uc010rem.1_Missense_Mutation_p.E214K	NM_001142316	NP_001135788	P25791	RBTN2_HUMAN	LIM domain only 2 isoform 2	145	LIM zinc-binding 2.				multicellular organismal development	nucleus	protein binding|zinc ion binding			lung(1)	1						ATGTCCTGTTCGCACACTATG	0.502			T	TRD@	T-ALL								12	37					0	0	1	0	0
ABTB2	25841	broad.mit.edu	37	11	34218898	34218898	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:34218898G>A	uc001mvl.1	-	3	890	c.660C>T	c.(658-660)CCC>CCT	p.P220P		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	220							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				TCATTCTCGGGGGGTCCAGGT	0.532													28	30					0	0	1	0	0
EHF	26298	broad.mit.edu	37	11	34668007	34668007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:34668007G>A	uc001mvr.1	+	3	230	c.119G>A	c.(118-120)GGC>GAC	p.G40D	EHF_uc009yke.1_Missense_Mutation_p.G40D|EHF_uc009ykf.1_Missense_Mutation_p.G43D	NM_012153	NP_036285	Q9NZC4	EHF_HUMAN	ets homologous factor	40	PNT.			G -> S (in Ref. 2; AAD30990/AAD30991).	cell proliferation|epithelial cell differentiation|multicellular organismal development|positive regulation of transcription, DNA-dependent		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(20;0.117)	Epithelial(1;0.055)|all cancers(1;0.137)|STAD - Stomach adenocarcinoma(6;0.235)			TTTTTTGGAGGCCAGTGGCAT	0.527													55	65					0	0	1	0	0
EHF	26298	broad.mit.edu	37	11	34680082	34680082	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:34680082C>T	uc001mvr.1	+	8	721	c.610C>T	c.(610-612)CCG>TCG	p.P204S	EHF_uc009yke.1_Missense_Mutation_p.P181S|EHF_uc009ykf.1_Missense_Mutation_p.P207S	NM_012153	NP_036285	Q9NZC4	EHF_HUMAN	ets homologous factor	204					cell proliferation|epithelial cell differentiation|multicellular organismal development|positive regulation of transcription, DNA-dependent		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(20;0.117)	Epithelial(1;0.055)|all cancers(1;0.137)|STAD - Stomach adenocarcinoma(6;0.235)			TTCATCAGACCCGAGAGGGAC	0.463													29	49					0	0	1	0	0
SLC1A2	6506	broad.mit.edu	37	11	35336622	35336622	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:35336622C>T	uc001mwd.2	-	3	850	c.258G>A	c.(256-258)ATG>ATA	p.M86I	SLC1A2_uc001mwe.2_Missense_Mutation_p.M77I|SLC1A2_uc010rev.1_Missense_Mutation_p.M86I	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	86					D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	TTAGCATCCTCATGAGTATAT	0.493													37	42					0	0	1	0	0
SLC1A2	6506	broad.mit.edu	37	11	35339031	35339031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:35339031C>T	uc001mwd.2	-	2	642	c.50G>A	c.(49-51)CGA>CAA	p.R17Q	SLC1A2_uc001mwe.2_Missense_Mutation_p.R8Q|SLC1A2_uc010rev.1_Missense_Mutation_p.R17Q	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	17	Cytoplasmic (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	GTCGTGCATTCGCACTTCCAC	0.567													88	117					0	0	1	0	0
PAMR1	25891	broad.mit.edu	37	11	35463233	35463233	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:35463233C>T	uc001mwg.2	-	7	872	c.829G>A	c.(829-831)GAA>AAA	p.E277K	PAMR1_uc001mwf.2_Missense_Mutation_p.E294K|PAMR1_uc010rew.1_Missense_Mutation_p.E166K|PAMR1_uc010rex.1_Missense_Mutation_p.E237K	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	277					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CAGTTTCTTTCTTCAAGGACT	0.398													23	40					0	0	1	0	0
RAG1	5896	broad.mit.edu	37	11	36596150	36596150	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:36596150C>T	uc001mwu.3	+	2	1420	c.1296C>T	c.(1294-1296)TCC>TCT	p.S432S	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	432	NBD.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				ATGTGAAGTCCGTGTGCATGA	0.567									Familial_Hemophagocytic_Lymphohistiocytosis				20	45					0	0	1	0	0
RAG2	5897	broad.mit.edu	37	11	36615272	36615272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:36615272C>T	uc001mwv.3	-	2	635	c.447G>A	c.(445-447)GGG>GGA	p.G149G	C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	149					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				CCATACTTTTCCCTCGGCTGT	0.453									Familial_Hemophagocytic_Lymphohistiocytosis				45	79					0	0	1	0	0
C11orf74	119710	broad.mit.edu	37	11	36654959	36654959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:36654959C>T	uc001mwy.1	+	3	335	c.262C>T	c.(262-264)CGT>TGT	p.R88C	C11orf74_uc010rfd.1_RNA|C11orf74_uc001mww.1_Intron|C11orf74_uc001mwx.1_Intron|C11orf74_uc001mwz.1_Intron|C11orf74_uc010rfe.1_RNA	NM_138787	NP_620142	Q86VG3	CK074_HUMAN	hypothetical protein LOC119710	88											0	all_lung(20;0.226)	all_hematologic(20;0.0118)				CATCTTTCTTCGTACTTCATC	0.308													10	37					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136113	40136113	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:40136113C>T	uc001mxa.1	-	2	3694	c.1730G>A	c.(1729-1731)GGA>GAA	p.G577E	LRRC4C_uc001mxc.1_Missense_Mutation_p.G573E|LRRC4C_uc001mxd.1_Missense_Mutation_p.G573E|LRRC4C_uc001mxb.1_Missense_Mutation_p.G573E	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	577					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GGGTGTGTCTCCCGTAATCTC	0.458													60	58					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136294	40136294	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:40136294G>A	uc001mxa.1	-	2	3513	c.1549C>T	c.(1549-1551)CCA>TCA	p.P517S	LRRC4C_uc001mxc.1_Missense_Mutation_p.P513S|LRRC4C_uc001mxd.1_Missense_Mutation_p.P513S|LRRC4C_uc001mxb.1_Missense_Mutation_p.P513S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	517					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TCAATTCCTGGGATCCCACTG	0.473													24	32					0	0	1	0	0
API5	8539	broad.mit.edu	37	11	43342980	43342980	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:43342980C>T	uc010rfh.1	+	4	518	c.345C>T	c.(343-345)AAC>AAT	p.N115N	API5_uc010rfg.1_Silent_p.N104N|API5_uc001mxf.2_Silent_p.N115N|API5_uc010rfi.1_Silent_p.N61N|API5_uc001mxg.2_5'UTR	NM_001142930	NP_001136402	Q9BZZ5	API5_HUMAN	apoptosis inhibitor 5 isoform a	115					anti-apoptosis|apoptosis	cytoplasm|spliceosomal complex	fibroblast growth factor binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						CAGAATTTAACCTAGTGAACA	0.303													19	45					0	0	1	0	0
ALKBH3	221120	broad.mit.edu	37	11	43923211	43923211	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:43923211C>T	uc001mxs.2	+	8	1048	c.605C>T	c.(604-606)CCC>CTC	p.P202L	ALKBH3_uc009ykp.2_RNA|ALKBH3_uc001mxt.2_RNA|ALKBH3_uc009ykq.2_Missense_Mutation_p.P55L	NM_139178	NP_631917	Q96Q83	ALKB3_HUMAN	AlkB homolog 3	202	Fe2OG dioxygenase.				DNA dealkylation involved in DNA repair|oxidative single-stranded DNA demethylation	mitochondrion|nucleoplasm	damaged DNA binding|DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0					Vitamin C(DB00126)	GGGAGGTGCCCCATTATTGCT	0.478								Direct_reversal_of_damage					33	46					0	0	1	0	0
EXT2	2132	broad.mit.edu	37	11	44148446	44148446	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:44148446C>T	uc001mxz.2	+	6	1354	c.1020C>T	c.(1018-1020)GTC>GTT	p.V340V	EXT2_uc010rfo.1_Silent_p.V368V|EXT2_uc001mxy.2_Silent_p.V353V|EXT2_uc009ykt.2_Silent_p.V340V|EXT2_uc001mya.2_Silent_p.V373V	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	340	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						CTGGCTGTGTCCCGGTTGTCA	0.498			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				37	110					0	0	1	0	0
ALX4	60529	broad.mit.edu	37	11	44289073	44289073	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:44289073G>A	uc001myb.2	-	3	981	c.877C>T	c.(877-879)CTC>TTC	p.L293F		NM_021926	NP_068745	Q9H161	ALX4_HUMAN	aristaless-like homeobox 4	293					hair follicle development						0						CGGGTGAGGAGGGGCAGCTCA	0.622													20	18					0	0	1	0	0
TSPAN18	90139	broad.mit.edu	37	11	44948236	44948236	+	Silent	SNP	G	A	A	rs149091051	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:44948236G>A	uc001mye.3	+	7	788	c.627G>A	c.(625-627)ACG>ACA	p.T209T	TP53I11_uc001myf.1_Intron|TSPAN18_uc001myg.2_Silent_p.T209T	NM_130783	NP_570139	Q96SJ8	TSN18_HUMAN	tetraspanin 18 isoform 2	209	Extracellular (Potential).					integral to membrane					0						GCTGTTACACGGTGATCCTCA	0.587											OREG0020922	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	123					0	0	1	0	0
PRDM11	56981	broad.mit.edu	37	11	45204610	45204610	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:45204610T>G	uc001myo.2	+	5	773	c.524T>G	c.(523-525)ATC>AGC	p.I175S		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	175	SET.									upper_aerodigestive_tract(1)	1						AAGGGCCACATCTTCGGCCCC	0.597											OREG0020926	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	16					0	0	1	0	0
SYT13	57586	broad.mit.edu	37	11	45265663	45265663	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:45265663C>T	uc001myq.2	-	6	1347	c.1221G>A	c.(1219-1221)TGG>TGA	p.W407*	SYT13_uc009yku.1_Nonsense_Mutation_p.W263*	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	407	Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						GCATCTCCTCCCAGTGGCTGC	0.642													6	49					0	0	1	0	0
SYT13	57586	broad.mit.edu	37	11	45277287	45277287	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:45277287G>A	uc001myq.2	-	2	465	c.339C>T	c.(337-339)AGC>AGT	p.S113S	SYT13_uc009yku.1_5'UTR	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	113	Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						GGGGTTGGGGGCTGGCAGGTG	0.587													9	29					0	0	1	0	0
CHST1	8534	broad.mit.edu	37	11	45671526	45671526	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:45671526G>A	uc001mys.1	-	4	1619	c.948C>T	c.(946-948)ATC>ATT	p.I316I		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	316	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GGAACCCGTAGATCTCCTCGG	0.642													31	51					0	0	1	0	0
CHST1	8534	broad.mit.edu	37	11	45671761	45671761	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:45671761C>T	uc001mys.1	-	4	1384	c.713G>A	c.(712-714)GGC>GAC	p.G238D		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	238	Lumenal (Potential).|PAPS (By similarity).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		AGCCAGAATGCCGCGGGGGTC	0.652													16	60					0	0	1	0	0
CHST1	8534	broad.mit.edu	37	11	45671842	45671842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:45671842G>A	uc001mys.1	-	4	1303	c.632C>T	c.(631-633)CCC>CTC	p.P211L		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	211	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GTTCACCTCGGGCACGCGCAC	0.682													27	23					0	0	1	0	0
SLC35C1	55343	broad.mit.edu	37	11	45832766	45832766	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:45832766G>A	uc001nbp.2	+	2	1687	c.975G>A	c.(973-975)ACG>ACA	p.T325T	SLC35C1_uc001nbo.2_Silent_p.T312T|SLC35C1_uc010rgm.1_Silent_p.T312T	NM_018389	NP_060859	Q96A29	FUCT1_HUMAN	GDP-fucose transporter 1 isoform a	325						Golgi membrane|integral to membrane	GDP-fucose transmembrane transporter activity				0				GBM - Glioblastoma multiforme(35;0.227)		TCTGGTGGACGAGCAACATGA	0.632													22	16					0	0	1	0	0
MAPK8IP1	9479	broad.mit.edu	37	11	45923603	45923603	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:45923603C>T	uc001nbr.2	+	4	765	c.595C>T	c.(595-597)CTG>TTG	p.L199L		NM_005456	NP_005447	Q9UQF2	JIP1_HUMAN	mitogen-activated protein kinase 8 interacting	199	JNK-binding domain (JBD).				vesicle-mediated transport	nucleus|perinuclear region of cytoplasm	kinesin binding|MAP-kinase scaffold activity|protein kinase inhibitor activity			ovary(2)|breast(1)|skin(1)	4				GBM - Glioblastoma multiforme(35;0.231)		ATCCTCACCCCTGAAGACAGG	0.532													74	100					0	0	1	0	0
CREB3L1	90993	broad.mit.edu	37	11	46334007	46334007	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:46334007G>A	uc001ncf.2	+	6	1320	c.885G>A	c.(883-885)CGG>CGA	p.R295R		NM_052854	NP_443086	Q96BA8	CR3L1_HUMAN	cAMP responsive element binding protein 3-like	295	Cytoplasmic (Potential).|Basic motif.				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L1(6)	soft_tissue(6)|ovary(2)	8				GBM - Glioblastoma multiforme(35;0.0285)		AGAGAGTCCGGAGGAAAATCA	0.587			T	FUS	myxofibrosarcoma								14	16					0	0	1	0	0
CREB3L1	90993	broad.mit.edu	37	11	46342292	46342292	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:46342292C>T	uc001ncf.2	+	12	1991	c.1556C>T	c.(1555-1557)TCC>TTC	p.S519F	CREB3L1_uc001ncg.2_Missense_Mutation_p.P153S	NM_052854	NP_443086	Q96BA8	CR3L1_HUMAN	cAMP responsive element binding protein 3-like	519	Lumenal (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L1(6)	soft_tissue(6)|ovary(2)	8				GBM - Glioblastoma multiforme(35;0.0285)		ATCAAACTCTCCTAGGCCATG	0.592			T	FUS	myxofibrosarcoma								9	13					0	0	1	0	0
DGKZ	8525	broad.mit.edu	37	11	46398761	46398761	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:46398761C>T	uc001ncn.1	+	26	3030	c.2905C>T	c.(2905-2907)CGG>TGG	p.R969W	DGKZ_uc001nch.1_Missense_Mutation_p.R797W|DGKZ_uc010rgq.1_Missense_Mutation_p.R724W|DGKZ_uc001ncj.1_Missense_Mutation_p.R747W|DGKZ_uc010rgr.1_Missense_Mutation_p.R746W|DGKZ_uc001nck.1_Missense_Mutation_p.R559W|DGKZ_uc001ncl.2_Missense_Mutation_p.R781W|DGKZ_uc001ncm.2_Missense_Mutation_p.R780W|DGKZ_uc009yky.1_Missense_Mutation_p.R781W|DGKZ_uc010rgs.1_Missense_Mutation_p.R758W	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	969					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		ACCCACGCCCCGGTGAGTCCT	0.453													14	15					0	0	1	0	0
MDK	4192	broad.mit.edu	37	11	46403895	46403895	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:46403895G>A	uc001nco.2	+	3	350	c.128G>A	c.(127-129)GGG>GAG	p.G43E	MDK_uc009ykz.1_Missense_Mutation_p.G43E|MDK_uc001ncp.2_Missense_Mutation_p.G43E|MDK_uc009yla.2_Intron|MDK_uc009ylb.2_Missense_Mutation_p.G43D|MDK_uc001ncq.2_Missense_Mutation_p.G43E|MDK_uc001ncr.2_RNA|MDK_uc001ncs.2_Missense_Mutation_p.G43E	NM_001012334	NP_001012334	P21741	MK_HUMAN	midkine	43					adrenal gland development|cell differentiation|nervous system development|positive regulation of cell division|response to wounding|signal transduction	extracellular region	growth factor activity|heparin binding				0				GBM - Glioblastoma multiforme(35;0.0252)|Lung(87;0.14)		TGGGCCTGGGGGCCCTGCACC	0.692													5	13					0	0	1	0	0
CHRM4	1132	broad.mit.edu	37	11	46407393	46407393	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:46407393C>T	uc001nct.1	-	1	715	c.715G>A	c.(715-717)GCC>ACC	p.A239T		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	239	Cytoplasmic (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	AGCGTCTTGGCTTTCTTCTCC	0.642													5	5					0	0	1	0	0
KIAA0652	9776	broad.mit.edu	37	11	46686987	46686987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:46686987C>T	uc009yld.2	+	13	1639	c.955C>T	c.(955-957)CAT>TAT	p.H319Y	KIAA0652_uc001nda.2_Missense_Mutation_p.H352Y|KIAA0652_uc001ndb.2_Missense_Mutation_p.H319Y|KIAA0652_uc001ncz.2_Missense_Mutation_p.H282Y|KIAA0652_uc001ndc.2_Missense_Mutation_p.H282Y|KIAA0652_uc010rgv.1_Missense_Mutation_p.H203Y	NM_001142673	NP_001136145	O75143	ATG13_HUMAN	autophagy-related protein 13 isoform 1	319					autophagic vacuole assembly	cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding				0				GBM - Glioblastoma multiforme(35;0.226)		CCAGCCTGTCCATGGTACCCA	0.562													25	45					0	0	1	0	0
LRP4	4038	broad.mit.edu	37	11	46898811	46898811	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:46898811C>T	uc001ndn.3	-	23	3362	c.3216G>A	c.(3214-3216)GTG>GTA	p.V1072V		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1072	Extracellular (Potential).				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		TTGGTACCACCACATCAGCAA	0.527													20	69					0	0	1	0	0
LRP4	4038	broad.mit.edu	37	11	46903410	46903410	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:46903410C>T	uc001ndn.3	-	20	2803	c.2657G>A	c.(2656-2658)CGA>CAA	p.R886Q		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	886	Extracellular (Potential).|LDL-receptor class B 8.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CATGCCAGCTCGTTCAATCTT	0.512													6	41					0	0	1	0	0
DDB2	1643	broad.mit.edu	37	11	47256474	47256474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47256474C>T	uc001neb.2	+	6	1064	c.869C>T	c.(868-870)CCT>CTT	p.P290L	DDB2_uc001nec.2_Intron|DDB2_uc009yli.1_Missense_Mutation_p.P226L|DDB2_uc001ned.2_Intron|DDB2_uc001nee.2_Intron|DDB2_uc001nef.2_Intron|DDB2_uc001neg.2_Missense_Mutation_p.P149L|DDB2_uc001neh.2_RNA	NM_000107	NP_000098	Q92466	DDB2_HUMAN	damage-specific DNA binding protein 2	290	WD 4.				nucleotide-excision repair, DNA damage removal|protein autoubiquitination|protein polyubiquitination|response to UV	nucleoplasm|protein complex	damaged DNA binding|protein binding			kidney(2)|ovary(1)	3						CACAGGCATCCTGTCAACGCA	0.562			Mis|N			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				16	17					0	0	1	0	0
DDB2	1643	broad.mit.edu	37	11	47256923	47256923	+	Missense_Mutation	SNP	C	T	T	rs145822896		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47256923C>T	uc001neb.2	+	7	1178	c.983C>T	c.(982-984)CCG>CTG	p.P328L	DDB2_uc001nec.2_RNA|DDB2_uc009yli.1_Missense_Mutation_p.P264L|DDB2_uc001ned.2_RNA|DDB2_uc001nee.2_Intron|DDB2_uc001nef.2_Intron|DDB2_uc001neg.2_Missense_Mutation_p.P187L|DDB2_uc001neh.2_RNA	NM_000107	NP_000098	Q92466	DDB2_HUMAN	damage-specific DNA binding protein 2	328					nucleotide-excision repair, DNA damage removal|protein autoubiquitination|protein polyubiquitination|response to UV	nucleoplasm|protein complex	damaged DNA binding|protein binding			kidney(2)|ovary(1)	3						GGCCTGATCCCGCACCCTCAC	0.622			Mis|N			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				23	35					0	0	1	0	0
NR1H3	10062	broad.mit.edu	37	11	47283522	47283522	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47283522C>T	uc009ylm.2	+	7	1162	c.941C>T	c.(940-942)ACC>ATC	p.T314I	NR1H3_uc009yll.1_Missense_Mutation_p.T320I|NR1H3_uc010rhk.1_Missense_Mutation_p.T320I|NR1H3_uc001nek.2_Missense_Mutation_p.T269I|NR1H3_uc001nej.2_Missense_Mutation_p.T254I|NR1H3_uc001nel.2_Missense_Mutation_p.T333I|NR1H3_uc001nen.3_Missense_Mutation_p.T254I|NR1H3_uc001nem.2_Missense_Mutation_p.T314I|NR1H3_uc001nep.2_Missense_Mutation_p.T163I	NM_005693	NP_005684	Q13133	NR1H3_HUMAN	nuclear receptor subfamily 1, group H, member 3	314	Ligand-binding (Potential).				apoptotic cell clearance|cellular response to lipopolysaccharide|cholesterol homeostasis|negative regulation of cholesterol storage|negative regulation of inflammatory response|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of macrophage activation|negative regulation of pancreatic juice secretion|negative regulation of pinocytosis|negative regulation of secretion of lysosomal enzymes|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of cholesterol homeostasis|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor biosynthetic process|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of circadian rhythm|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to progesterone stimulus|triglyceride homeostasis	nuclear chromatin|nucleoplasm	cholesterol binding|steroid hormone receptor activity|sterol response element binding|transcription coactivator activity|zinc ion binding			ovary(2)|lung(1)	3						GAGAGTATCACCTTCCTCAAG	0.507													66	92					0	0	1	0	0
MYBPC3	4607	broad.mit.edu	37	11	47358979	47358979	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47358979G>A	uc001nfa.3	-	24	2620	c.2565C>T	c.(2563-2565)TCC>TCT	p.S855S	MYBPC3_uc010rhl.1_RNA	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	854	Fibronectin type-III 1.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		GGCTGGGCCTGGACATGCCGA	0.597													20	33					0	0	1	0	0
MYBPC3	4607	broad.mit.edu	37	11	47363609	47363609	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47363609C>T	uc001nfa.3	-	17	1778	c.1723G>A	c.(1723-1725)GGT>AGT	p.G575S	MYBPC3_uc010rhl.1_RNA	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	574	Ig-like C2-type 4.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		AGCCACACACCCCGAACATTC	0.577													8	15					0	0	1	0	0
SPI1	6688	broad.mit.edu	37	11	47380496	47380496	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47380496G>A	uc001nfc.1	-	4	615	c.392C>T	c.(391-393)TCA>TTA	p.S131L	SPI1_uc001nfb.1_Missense_Mutation_p.S132L|SLC39A13_uc001nfd.2_Intron|SPI1_uc009ylp.1_Missense_Mutation_p.S125L	NM_003120	NP_003111	P17947	SPI1_HUMAN	hematopoietic transcription factor PU.1 isoform	131					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of erythrocyte differentiation	nucleus	protein binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2				Lung(87;0.0967)		CTCCTCATCTGAGCTGGGCTG	0.692													5	4					0	0	1	0	0
SLC39A13	91252	broad.mit.edu	37	11	47436453	47436453	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47436453G>A	uc009ylq.2	+	8	1083	c.912G>A	c.(910-912)AAG>AAA	p.K304K	SLC39A13_uc001nfd.2_3'UTR|SLC39A13_uc001nfe.1_RNA|SLC39A13_uc001nff.3_Silent_p.K304K|SLC39A13_uc001nfg.3_Silent_p.K304K	NM_001128225	NP_001121697	Q96H72	S39AD_HUMAN	solute carrier family 39 (zinc transporter),	304	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity				0				Lung(87;0.0936)		AGTCCCCCAAGGGAGTAGGTA	0.682													23	56					0	0	1	0	0
PSMC3	5702	broad.mit.edu	37	11	47447451	47447451	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47447451G>A	uc001nfh.2	-	2	320	c.126C>T	c.(124-126)ATC>ATT	p.I42I	PSMC3_uc009ylr.1_Silent_p.I42I	NM_002804	NP_002795	P17980	PRS6A_HUMAN	proteasome 26S ATPase subunit 3	42					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|nucleoside-triphosphatase activity|protein binding|transcription coactivator activity|transcription corepressor activity			ovary(4)	4				Lung(87;0.0932)|BRCA - Breast invasive adenocarcinoma(625;0.13)		GTGTGCGCTGGATGATCTCCT	0.527													27	69					0	0	1	0	0
NDUFS3	4722	broad.mit.edu	37	11	47605940	47605940	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47605940C>T	uc001nga.2	+	7	784	c.702C>T	c.(700-702)GAC>GAT	p.D234D	NDUFS3_uc001nft.3_Silent_p.D213D|FAM180B_uc001ngb.1_5'Flank	NM_004551	NP_004542	O75489	NDUS3_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 3	234					induction of apoptosis|mitochondrial electron transport, NADH to ubiquinone|negative regulation of cell growth|reactive oxygen species metabolic process|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	GCAAATTTGACCTGAACAGCC	0.562													64	93					0	0	1	0	0
NDUFS3	4722	broad.mit.edu	37	11	47605951	47605951	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47605951C>T	uc001nga.2	+	7	795	c.713C>T	c.(712-714)CCC>CTC	p.P238L	NDUFS3_uc001nft.3_Missense_Mutation_p.P217L|FAM180B_uc001ngb.1_5'Flank	NM_004551	NP_004542	O75489	NDUS3_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 3	238					induction of apoptosis|mitochondrial electron transport, NADH to ubiquinone|negative regulation of cell growth|reactive oxygen species metabolic process|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	CTGAACAGCCCCTGGGAGGCT	0.557													47	113					0	0	1	0	0
AGBL2	79841	broad.mit.edu	37	11	47707561	47707561	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:47707561G>A	uc001ngg.2	-	10	1772	c.1672C>T	c.(1672-1674)CAT>TAT	p.H558Y	AGBL2_uc001ngf.2_Intron|AGBL2_uc010rhq.1_Missense_Mutation_p.H520Y|AGBL2_uc001ngh.1_Missense_Mutation_p.H502Y	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	558		Zinc (By similarity).			proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						CTGTGGCCATGGAAATCACAA	0.383													41	68					0	0	1	0	0
PTPRJ	5795	broad.mit.edu	37	11	48157768	48157768	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48157768C>T	uc001ngp.3	+	9	2148	c.1793C>T	c.(1792-1794)CCG>CTG	p.P598L	PTPRJ_uc010rhr.1_Missense_Mutation_p.P43L	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	598	Extracellular (Potential).|Fibronectin type-III 6.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						GGCCTGATTCCGGGCACCTTA	0.512													32	42					0	0	1	0	0
OR4X2	119764	broad.mit.edu	37	11	48266805	48266805	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48266805C>T	uc001ngs.1	+	1	150	c.150C>T	c.(148-150)CCC>CCT	p.P50P		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	50	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGGTTCCCCCATGTACTTCT	0.488													31	51					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48285448	48285448	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48285448C>T	uc010rht.1	+	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						AAATAATTTTCGTGGGATTTT	0.428													26	30					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48285576	48285576	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48285576C>T	uc010rht.1	+	1	164	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						GTGCTCACCTCCCCCATGTAT	0.478													23	36					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48286021	48286021	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48286021C>T	uc010rht.1	+	1	609	c.609C>T	c.(607-609)TCC>TCT	p.S203S		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						ATGGCGGCTCCATCTCCGTAG	0.547													19	32					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48286023	48286023	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48286023T>A	uc010rht.1	+	1	611	c.611T>A	c.(610-612)ATC>AAC	p.I204N		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						GGCGGCTCCATCTCCGTAGTC	0.552													20	32					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48286115	48286115	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48286115C>T	uc010rht.1	+	1	703	c.703C>T	c.(703-705)CTC>TTC	p.L235F		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	235	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						GCACAAGGCCCTCTCCACCTG	0.537													44	40					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48286164	48286164	+	Missense_Mutation	SNP	C	T	T	rs143647867	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48286164C>T	uc010rht.1	+	1	752	c.752C>T	c.(751-753)CCT>CTT	p.P251L		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						TTCTTCATACCTTGCTCCTTG	0.498													20	139					0	0	1	0	0
OR4S1	256148	broad.mit.edu	37	11	48328209	48328209	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48328209C>T	uc010rhu.1	+	1	435	c.435C>T	c.(433-435)GCC>GCT	p.A145A		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TAGCGGGGGCCTCCTGGTTAG	0.562													41	43					0	0	1	0	0
OR4S1	256148	broad.mit.edu	37	11	48328312	48328312	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48328312C>T	uc010rhu.1	+	1	538	c.538C>T	c.(538-540)CAT>TAT	p.H180Y		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGTGATGTTCATCCCCTGCT	0.493													32	28					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48346900	48346900	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48346900G>A	uc010rhv.1	+	1	408	c.408G>A	c.(406-408)GAG>GAA	p.E136E		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GAGGTGTTGAGATCATTCTGC	0.483													22	204					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48347430	48347431	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:48347430_48347431CC>TT	uc010rhv.1	+	1	938_939	c.938_939CC>TT	c.(937-939)ACC>ATT	p.T313I		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTCATTTATACCCTGAGAAATG	0.322													14	60					0	0	1	0	0
FOLH1	2346	broad.mit.edu	37	11	49168441	49168441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:49168441C>T	uc001ngy.2	-	19	2381	c.2120G>A	c.(2119-2121)GGA>GAA	p.G707E	FOLH1_uc001ngx.2_Missense_Mutation_p.E107K|FOLH1_uc001ngz.2_Missense_Mutation_p.G676E|FOLH1_uc009yly.2_Missense_Mutation_p.G692E|FOLH1_uc009ylz.2_Missense_Mutation_p.G661E|FOLH1_uc009yma.2_Missense_Mutation_p.G399E	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	707	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	ATCATAAATTCCTGGGAATGA	0.443													44	62					0	0	1	0	0
LOC440040	440040	broad.mit.edu	37	11	49598400	49598400	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:49598400C>T	uc010rhy.1	+	2	991	c.513C>T	c.(511-513)TCC>TCT	p.S171S	LOC440040_uc009ymb.2_Silent_p.S171S	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						AGGCAAGGTCCATGGTGGACA	0.443													35	26					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49974138	49974138	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:49974138C>T	uc010rhz.1	+	1	164	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TCACTGAGATCCCCCATGTAC	0.428													104	152					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49974674	49974674	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:49974674G>A	uc010rhz.1	+	1	700	c.700G>A	c.(700-702)GCC>ACC	p.A234T		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	234	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						AAGGCACGAAGCCCTCTCTAC	0.468													57	72					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49974693	49974693	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:49974693C>T	uc010rhz.1	+	1	719	c.719C>T	c.(718-720)TCC>TTC	p.S240F		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ACCTGTGTCTCCCACATCACA	0.458													59	85					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49974783	49974783	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:49974783C>T	uc010rhz.1	+	1	809	c.809C>T	c.(808-810)GCT>GTT	p.A270V		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	270	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						AAAGCAGTTGCTGTATTCTAC	0.378													26	91					0	0	1	0	0
OR4C12	283093	broad.mit.edu	37	11	50003147	50003147	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:50003147C>T	uc010ria.1	-	1	891	c.891G>A	c.(889-891)AGG>AGA	p.R297R		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TCCAAAGCTTCCTTATTGCAC	0.353													10	33					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51411603	51411603	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:51411603C>T	uc001nhi.1	-	1	793	c.793G>A	c.(793-795)GAT>AAT	p.D265N		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ATGAACTTATCAGTAGGAAAG	0.363													21	73					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51411827	51411827	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:51411827T>G	uc001nhi.1	-	1	569	c.569A>C	c.(568-570)TAC>TCC	p.Y190S		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				GCCTATAAAGTAGGTGTCAGT	0.423													15	44					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51412231	51412231	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:51412231G>A	uc001nhi.1	-	1	165	c.165C>T	c.(163-165)TCC>TCT	p.S55S		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	55	Cytoplasmic (Potential).			GSP -> CSA (in Ref. 1; BAC05754).	sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				AATACATTGGGGAACCCAAGG	0.403													18	55					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51412344	51412344	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:51412344C>T	uc001nhi.1	-	1	52	c.52G>A	c.(52-54)GAT>AAT	p.D18N		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ACACCAGGATCCTGAGAAAAG	0.428													16	38					0	0	1	0	0
OR4C46	119749	broad.mit.edu	37	11	51516198	51516198	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:51516198C>T	uc010ric.1	+	1	917	c.917C>T	c.(916-918)TCA>TTA	p.S306L		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AAGGACATTTCAGGTGACAAA	0.249													21	39					0	0	1	0	0
TRIM48	79097	broad.mit.edu	37	11	55032413	55032413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55032413G>A	uc010rid.1	+	2	168	c.82G>A	c.(82-84)GAA>AAA	p.E28K		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	12						intracellular	zinc ion binding				0						CTTCCAGAGGGAACTCACCTG	0.483													89	67					0	0	1	0	0
TRIM48	79097	broad.mit.edu	37	11	55032589	55032589	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55032589G>A	uc010rid.1	+	2	344	c.258G>A	c.(256-258)TTG>TTA	p.L86L		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	70						intracellular	zinc ion binding				0						ACATTCGATTGAAGAAGATGG	0.438													29	26					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	55065577	55065578	+	RNA	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55065577_55065578CC>TT	uc001nhl.1	-	1		c.131_132GG>AA								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		CATGTTGTCTCCTTGCATTTAG	0.49													13	30					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	55065620	55065620	+	RNA	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55065620G>C	uc001nhl.1	-	1		c.89C>G								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		TGTCTTGCCAGTTGAGGTAGA	0.493													15	47					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	55065679	55065679	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55065679G>A	uc001nhl.1	-	1		c.30C>T								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		ACTGGGTCTAGGAAGTAGTTC	0.473													49	93					0	0	1	0	0
OR4A16	81327	broad.mit.edu	37	11	55110892	55110892	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55110892C>T	uc010rie.1	+	1	216	c.216C>T	c.(214-216)TCC>TCT	p.S72S		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						CCATATATTCCACTGCCATGT	0.443													67	189					0	0	1	0	0
OR4A16	81327	broad.mit.edu	37	11	55111096	55111096	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55111096C>T	uc010rie.1	+	1	420	c.420C>T	c.(418-420)ATC>ATT	p.I140I		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						TGGTTTGCATCCTTCTGTTGG	0.468													59	122					0	0	1	0	0
OR4A16	81327	broad.mit.edu	37	11	55111166	55111166	+	Silent	SNP	C	T	T	rs144421988	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55111166C>T	uc010rie.1	+	1	490	c.490C>T	c.(490-492)CTA>TTA	p.L164L		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						TCTGTACAGTCTACCAATCTG	0.443													31	145					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55135647	55135647	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55135647C>T	uc010rif.1	+	1	288	c.288C>T	c.(286-288)TTC>TTT	p.F96F		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	96	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTTATCATTCATAGATACCG	0.433													53	160					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55135705	55135705	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55135705G>A	uc010rif.1	+	1	346	c.346G>A	c.(346-348)GAG>AAG	p.E116K		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	116	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTGCTCTCTGAGAAAAAGAC	0.403													84	171					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136093	55136093	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55136093C>T	uc010rif.1	+	1	734	c.734C>T	c.(733-735)TCC>TTC	p.S245F		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	245	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATCCTGCTTTCCTATGGGGTC	0.428													36	88					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136144	55136144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55136144G>A	uc010rif.1	+	1	785	c.785G>A	c.(784-786)CGA>CAA	p.R262Q		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	262	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GAAGGGAAACGAAAAGCTTTC	0.438													56	123					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136211	55136211	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55136211C>T	uc010rif.1	+	1	852	c.852C>T	c.(850-852)TTC>TTT	p.F284F		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	284	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCTGTATCTTCTTGTATGCAA	0.408													79	257					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322440	55322440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55322440C>T	uc010rig.1	+	1	658	c.658C>T	c.(658-660)CCC>TCC	p.P220S		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTTCCAGCTTCCCTTTTGTGG	0.478										HNSCC(20;0.049)			10	49					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322479	55322479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55322479G>A	uc010rig.1	+	1	697	c.697G>A	c.(697-699)GAC>AAC	p.D233N		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTTATGTGTGACTTGTACCC	0.458										HNSCC(20;0.049)			10	40					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322559	55322559	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55322559C>T	uc010rig.1	+	1	777	c.777C>T	c.(775-777)ATC>ATT	p.I259I		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTGGGTTTATCTGCATCATAA	0.468										HNSCC(20;0.049)			35	60					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322632	55322632	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55322632G>A	uc010rig.1	+	1	850	c.850G>A	c.(850-852)GAA>AAA	p.E284K		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ACACAGTTCTGAAGGGCGCTG	0.453										HNSCC(20;0.049)			29	139					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322672	55322672	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55322672T>C	uc010rig.1	+	1	890	c.890T>C	c.(889-891)ATT>ACT	p.I297T		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGATCTCACATTGCTGTTGTG	0.433										HNSCC(20;0.049)			46	151					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322829	55322829	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55322829G>A	uc010rig.1	+	1	1047	c.1047G>A	c.(1045-1047)CAG>CAA	p.Q349Q		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAGTAAAACAGGCCATGAGGA	0.328										HNSCC(20;0.049)			32	76					0	0	1	0	0
OR4C16	219428	broad.mit.edu	37	11	55339669	55339669	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55339669G>A	uc010rih.1	+	1	66	c.66G>A	c.(64-66)AAG>AAA	p.K22K		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				CTTTTTGGAAGAAAATAGTGT	0.398													18	139					0	0	1	0	0
OR4C16	219428	broad.mit.edu	37	11	55340173	55340173	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55340173C>T	uc010rih.1	+	1	570	c.570C>T	c.(568-570)ACC>ACT	p.T190T		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				GTTCAGAAACCTATGTGGTTA	0.433													22	90					0	0	1	0	0
OR4C16	219428	broad.mit.edu	37	11	55340191	55340191	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55340191C>T	uc010rih.1	+	1	588	c.588C>T	c.(586-588)CTC>CTT	p.L196L		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	196	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				TTAACCTACTCCTGGTTTCCA	0.443													33	72					0	0	1	0	0
OR4C11	219429	broad.mit.edu	37	11	55371088	55371088	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55371088G>A	uc010rii.1	-	1	762	c.762C>T	c.(760-762)TTC>TTT	p.F254F		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTGTATATATGAATATACATG	0.438													8	83					0	0	1	0	0
OR4C11	219429	broad.mit.edu	37	11	55371562	55371562	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55371562C>T	uc010rii.1	-	1	288	c.288G>A	c.(286-288)ATG>ATA	p.M96I		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AGACTTGTGTCATGCACTCAT	0.413													53	101					0	0	1	0	0
OR4P4	81300	broad.mit.edu	37	11	55406212	55406213	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55406212_55406213CC>TT	uc010rij.1	+	1	379_380	c.379_380CC>TT	c.(379-381)CCC>TTC	p.P127F		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						CATTTGCAAGCCCCTGCACTAC	0.421													22	76					0	0	1	0	0
OR4P4	81300	broad.mit.edu	37	11	55406335	55406335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55406335G>A	uc010rij.1	+	1	502	c.502G>A	c.(502-504)GGC>AGC	p.G168S		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	168	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						ACCATTTTGTGGCCCAAATGA	0.388													29	66					0	0	1	0	0
OR4S2	219431	broad.mit.edu	37	11	55418468	55418468	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55418468C>T	uc001nhs.1	+	1	89	c.89C>T	c.(88-90)TCT>TTT	p.S30F		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				GTGGTGTTTTCTTTCTTCTAC	0.388													28	117					0	0	1	0	0
OR4S2	219431	broad.mit.edu	37	11	55419267	55419267	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55419267G>A	uc001nhs.1	+	1	888	c.888G>A	c.(886-888)ATG>ATA	p.M296I		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				AGAATGCAATGAAGAAACTGT	0.318													78	214					0	0	1	0	0
OR4S2	219431	broad.mit.edu	37	11	55419298	55419298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55419298G>A	uc001nhs.1	+	1	919	c.919G>A	c.(919-921)GAG>AAG	p.E307K		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				TGTTTTCTTGGAGGCTAAAGG	0.264													58	163					0	0	1	0	0
OR4C6	219432	broad.mit.edu	37	11	55432786	55432786	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55432786C>T	uc001nht.3	+	3	409	c.144C>T	c.(142-144)ATC>ATT	p.I48I	OR4C6_uc010rik.1_Silent_p.I48I	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	48	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TAACTATTATCACAAGTCAGA	0.408													23	219					0	0	1	0	0
OR4C6	219432	broad.mit.edu	37	11	55433090	55433090	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55433090G>A	uc001nht.3	+	3	713	c.448G>A	c.(448-450)GGA>AGA	p.G150R	OR4C6_uc010rik.1_Missense_Mutation_p.G150R	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TTGGGTGGGGGGATTTATGCA	0.468													21	94					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55541132	55541132	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55541132C>T	uc010ril.1	+	1	219	c.219C>T	c.(217-219)TTC>TTT	p.F73F		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TGACAGACTTCTGTTTTTCCA	0.388													39	110					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55541273	55541273	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55541273G>A	uc010ril.1	+	1	360	c.360G>A	c.(358-360)ATG>ATA	p.M120I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	120	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TAGCAGCGATGGCTTATGACC	0.433													69	192					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55541538	55541538	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55541538G>A	uc010ril.1	+	1	625	c.625G>A	c.(625-627)GAG>AAG	p.E209K		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				CATATTCAATGAGGTGAGCAG	0.393													31	143					0	0	1	0	0
OR5D14	219436	broad.mit.edu	37	11	55563286	55563286	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55563286G>A	uc010rim.1	+	1	255	c.255G>A	c.(253-255)GAG>GAA	p.E85E		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				AGCTGCTTGAGAACTTGGTAA	0.423													18	68					0	0	1	0	0
OR5L1	219437	broad.mit.edu	37	11	55578978	55578978	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55578978C>T	uc001nhw.1	+	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				TGGCTGAGTTCATTCTCCTTG	0.423													71	196					0	0	1	0	0
OR5L1	219437	broad.mit.edu	37	11	55579461	55579461	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55579461G>A	uc001nhw.1	+	1	519	c.519G>A	c.(517-519)GTG>GTA	p.V173V		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				GATCTAATGTGATTAACCACT	0.453													80	223					0	0	1	0	0
OR5L1	219437	broad.mit.edu	37	11	55579837	55579837	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55579837G>A	uc001nhw.1	+	1	895	c.895G>A	c.(895-897)GAA>AAA	p.E299K		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				AGATGTGAAAGAAGCTCTCAG	0.463													22	51					0	0	1	0	0
OR5D18	219438	broad.mit.edu	37	11	55587557	55587558	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55587557_55587558CC>TT	uc010rin.1	+	1	452_453	c.452_453CC>TT	c.(451-453)GCC>GTT	p.A151V		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				GGATCCTATGCCTGGGGAGTCT	0.48													23	167					0	0	1	0	0
OR5D18	219438	broad.mit.edu	37	11	55587646	55587646	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55587646G>A	uc010rin.1	+	1	541	c.541G>A	c.(541-543)GAG>AAG	p.E181K		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				CTTCTTCTGTGAGTTCTCCTC	0.428													46	135					0	0	1	0	0
OR5D18	219438	broad.mit.edu	37	11	55587768	55587768	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55587768C>T	uc010rin.1	+	1	663	c.663C>T	c.(661-663)TTC>TTT	p.F221F		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				CTTATGCGTTCATTGTTGTAA	0.478													25	87					0	0	1	0	0
OR5D18	219438	broad.mit.edu	37	11	55587930	55587930	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55587930C>T	uc010rin.1	+	1	825	c.825C>T	c.(823-825)GCC>GCT	p.A275A		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				TCAAAGTGGCCTCTGTGTTTT	0.498													15	105					0	0	1	0	0
OR5L2	26338	broad.mit.edu	37	11	55594959	55594959	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55594959G>A	uc001nhy.1	+	1	265	c.265G>A	c.(265-267)GAC>AAC	p.D89N		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				CTTTAACAAGGACAAAGCCAT	0.473										HNSCC(27;0.073)			78	209					0	0	1	0	0
OR5L2	26338	broad.mit.edu	37	11	55595213	55595213	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55595213G>A	uc001nhy.1	+	1	519	c.519G>A	c.(517-519)GTG>GTA	p.V173V		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				GATCTAATGTGATTAACCACT	0.478										HNSCC(27;0.073)			78	227					0	0	1	0	0
OR5L2	26338	broad.mit.edu	37	11	55595313	55595313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55595313G>A	uc001nhy.1	+	1	619	c.619G>A	c.(619-621)GAG>AAG	p.E207K		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				CACTTTGAATGAGAGTGTTAC	0.473										HNSCC(27;0.073)			60	155					0	0	1	0	0
OR5L2	26338	broad.mit.edu	37	11	55595369	55595369	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55595369C>T	uc001nhy.1	+	1	675	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TCACCACTATCCTGAAGATAC	0.483										HNSCC(27;0.073)			45	103					0	0	1	0	0
OR5D16	390144	broad.mit.edu	37	11	55606458	55606458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55606458C>T	uc010rio.1	+	1	231	c.231C>T	c.(229-231)TCC>TCT	p.S77S		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	77	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				GCTATTCCTCCATCATTGCTC	0.398													90	231					0	0	1	0	0
OR5D16	390144	broad.mit.edu	37	11	55606482	55606482	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55606482G>A	uc010rio.1	+	1	255	c.255G>A	c.(253-255)GTG>GTA	p.V85V		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TGATGCTGGTGAACCTGGTTG	0.393													107	240					0	0	1	0	0
OR5D16	390144	broad.mit.edu	37	11	55606647	55606647	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55606647G>A	uc010rio.1	+	1	420	c.420G>A	c.(418-420)CAG>CAA	p.Q140Q		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	140	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				CCATCTCCCAGAAACTCTGTG	0.463													39	80					0	0	1	0	0
OR5D16	390144	broad.mit.edu	37	11	55606746	55606746	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55606746C>T	uc010rio.1	+	1	519	c.519C>T	c.(517-519)TTC>TTT	p.F173F		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TTCATGGTTTCAACACAATCA	0.438													8	63					0	0	1	0	0
OR5D16	390144	broad.mit.edu	37	11	55606842	55606842	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55606842C>T	uc010rio.1	+	1	615	c.615C>T	c.(613-615)GCC>GCT	p.A205A		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TCACTGTTGCCACTTTTAATG	0.423													30	99					0	0	1	0	0
SPRYD5	84767	broad.mit.edu	37	11	55652907	55652907	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55652907G>A	uc010rip.1	+	2	95	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	1						intracellular	zinc ion binding				0		all_epithelial(135;0.226)				TCAGAAACATGAATTCTGGAA	0.443													50	170					0	0	1	0	0
SPRYD5	84767	broad.mit.edu	37	11	55652961	55652961	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55652961G>A	uc010rip.1	+	2	149	c.57G>A	c.(55-57)ATG>ATA	p.M19I	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	19	RING-type.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				CCATCTGCATGAACTACTTCC	0.502													41	99					0	0	1	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653197	55653197	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55653197A>T	uc010rip.1	+	2	385	c.293A>T	c.(292-294)GAG>GTG	p.E98V	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	98	B box-type.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				ATGCACAGAGAGACAAAGAAG	0.483													10	33					0	0	1	0	0
SPRYD5	84767	broad.mit.edu	37	11	55655605	55655605	+	Missense_Mutation	SNP	G	A	A	rs146327492		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55655605G>A	uc010rip.1	+	4	697	c.605G>A	c.(604-606)CGA>CAA	p.R202Q	SPRYD5_uc010riq.1_Missense_Mutation_p.R59Q	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	202						intracellular	zinc ion binding				0		all_epithelial(135;0.226)				GAAAGGCTGCGAAAGGAGGGC	0.428													20	80					0	0	1	0	0
SPRYD5	84767	broad.mit.edu	37	11	55655610	55655610	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55655610G>A	uc010rip.1	+	4	702	c.610G>A	c.(610-612)GAG>AAG	p.E204K	SPRYD5_uc010riq.1_Missense_Mutation_p.E61K	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	204						intracellular	zinc ion binding				0		all_epithelial(135;0.226)				GCTGCGAAAGGAGGGCGAGGA	0.423													33	70					0	0	1	0	0
SPRYD5	84767	broad.mit.edu	37	11	55658779	55658779	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55658779G>A	uc010rip.1	+	7	1122	c.1030G>A	c.(1030-1032)GAG>AAG	p.E344K	SPRYD5_uc010riq.1_Missense_Mutation_p.E201K	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	344	B30.2/SPRY.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				ATATTATTGGGAGGTTCATAT	0.433													56	143					0	0	1	0	0
OR5W2	390148	broad.mit.edu	37	11	55681549	55681549	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55681549C>T	uc010rir.1	-	1	510	c.510G>A	c.(508-510)GGG>GGA	p.G170G		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTCATTAGACCCACAGAAGC	0.433													15	118					0	0	1	0	0
OR5W2	390148	broad.mit.edu	37	11	55681681	55681681	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55681681G>A	uc010rir.1	-	1	378	c.378C>T	c.(376-378)ATC>ATT	p.I126I		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGGGGTTGATGATGGCCTTGT	0.458													29	49					0	0	1	0	0
OR5I1	10798	broad.mit.edu	37	11	55703333	55703333	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55703333C>T	uc010ris.1	-	1	544	c.544G>A	c.(544-546)GAC>AAC	p.D182N		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGAGGGAGGTCACAGAAAAAA	0.403													11	47					0	0	1	0	0
OR5I1	10798	broad.mit.edu	37	11	55703443	55703443	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55703443C>T	uc010ris.1	-	1	434	c.434G>A	c.(433-435)CGG>CAG	p.R145Q		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GACAATCAACCGCATACAGAT	0.428													29	71					0	0	1	0	0
OR5I1	10798	broad.mit.edu	37	11	55703507	55703507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55703507G>A	uc010ris.1	-	1	370	c.370C>T	c.(370-372)CGC>TGC	p.R124C		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCGACATAGCGATCATAGGCC	0.438													20	69					0	0	1	0	0
OR5I1	10798	broad.mit.edu	37	11	55703819	55703819	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55703819G>A	uc010ris.1	-	1	58	c.58C>T	c.(58-60)CCA>TCA	p.P20S		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGCGAGTTGGAAAACCTAAT	0.373													16	53					0	0	1	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735076	55735076	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55735076G>A	uc010rit.1	-	1	864	c.864C>T	c.(862-864)ATC>ATT	p.I288I		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	288	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					ATGCCACCATGATATCTTTGT	0.333													12	54					0	0	1	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735154	55735154	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55735154C>T	uc010rit.1	-	1	786	c.786G>A	c.(784-786)GGG>GGA	p.G262G		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					AAATCAGTTTCCCCATCCTTT	0.373													15	44					0	0	1	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735176	55735176	+	Missense_Mutation	SNP	G	A	A	rs142455941		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55735176G>A	uc010rit.1	-	1	764	c.764C>T	c.(763-765)CCA>CTA	p.P255L		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	255	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					AAACTGATGTGGTTTGGGCTG	0.393													20	43					0	0	1	0	0
OR5F1	338674	broad.mit.edu	37	11	55761311	55761311	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55761311G>A	uc010riv.1	-	1	791	c.791C>T	c.(790-792)TCC>TTC	p.S264F		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					GGAGTAGCTGGAACTAGGTCT	0.498													32	81					0	0	1	0	0
OR5F1	338674	broad.mit.edu	37	11	55761363	55761363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55761363C>T	uc010riv.1	-	1	739	c.739G>A	c.(739-741)GCC>ACC	p.A247T		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	247	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					AGAATTATGGCTGTCAGGTGA	0.493													12	81					0	0	1	0	0
OR5F1	338674	broad.mit.edu	37	11	55761768	55761768	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55761768A>G	uc010riv.1	-	1	334	c.334T>C	c.(334-336)TGC>CGC	p.C112R		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					AAGAGGATGCATTCGGTTGTC	0.473													44	127					0	0	1	0	0
OR5F1	338674	broad.mit.edu	37	11	55762066	55762066	+	Silent	SNP	G	A	A	rs139328258		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55762066G>A	uc010riv.1	-	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					CCAATAGGACGAACTCAGTCA	0.338													27	84					0	0	1	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798094	55798094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55798094C>T	uc010riw.1	+	1	200	c.200C>T	c.(199-201)TCT>TTT	p.S67F		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					AGCAACTTATCTTTCTTAGAC	0.343													25	53					0	0	1	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798442	55798442	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55798442C>T	uc010riw.1	+	1	548	c.548C>T	c.(547-549)CCT>CTT	p.P183L		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.P183P(1)		ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					GATATCCCACCTCTTCTGGCT	0.423													84	300					0	0	1	0	0
OR8I2	120586	broad.mit.edu	37	11	55860969	55860969	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55860969C>T	uc010rix.1	+	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					TGTACTTTTTCCTGAGCAATT	0.383													49	243					0	0	1	0	0
OR8I2	120586	broad.mit.edu	37	11	55861330	55861330	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55861330C>T	uc010rix.1	+	1	547	c.547C>T	c.(547-549)CTT>TTT	p.L183F		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					CACCACAGCTCTTTTAGCACT	0.438													51	165					0	0	1	0	0
OR8I2	120586	broad.mit.edu	37	11	55861395	55861395	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55861395C>T	uc010rix.1	+	1	612	c.612C>T	c.(610-612)TTC>TTT	p.F204F		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					TAGCTGGATTCACTCTTCTTA	0.453													26	98					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55872836	55872836	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55872836C>T	uc010riy.1	+	1	318	c.318C>T	c.(316-318)TTC>TTT	p.F106F		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TTTTTGCCTTCTTGGGTACTG	0.448										HNSCC(53;0.14)			146	370					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55872865	55872865	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55872865C>T	uc010riy.1	+	1	347	c.347C>T	c.(346-348)TCC>TTC	p.S116F		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TACCTTCTCTCCTCAATGGCC	0.463										HNSCC(53;0.14)			103	299					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55872882	55872882	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55872882C>T	uc010riy.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					GGCCCATGATCGCTATGCAGC	0.458										HNSCC(53;0.14)			67	256					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55872953	55872953	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55872953C>T	uc010riy.1	+	1	435	c.435C>T	c.(433-435)ATC>ATT	p.I145I		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TCGCTCTCATCACTGGGCCTT	0.448										HNSCC(53;0.14)			71	199					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55873178	55873178	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55873178C>T	uc010riy.1	+	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					CCTATGTGTTCATTCTCTTTA	0.403										HNSCC(53;0.14)			55	124					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55873207	55873207	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55873207C>T	uc010riy.1	+	1	689	c.689C>T	c.(688-690)TCC>TTC	p.S230F		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					AAAATTAATTCCACTTCAGGA	0.373										HNSCC(53;0.14)			41	91					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55873228	55873228	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55873228C>T	uc010riy.1	+	1	710	c.710C>T	c.(709-711)GCT>GTT	p.A237V		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					AAGCAGAAAGCTTTCTCTACT	0.388										HNSCC(53;0.14)			26	101					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55873438	55873438	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55873438G>A	uc010riy.1	+	1	920	c.920G>A	c.(919-921)AGA>AAA	p.R307K		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					GTCATGCAGAGAAGACAGGAC	0.353										HNSCC(53;0.14)			42	121					0	0	1	0	0
OR8H3	390152	broad.mit.edu	37	11	55890739	55890739	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55890739G>A	uc001nii.1	+	1	891	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					ACAGAGAAGTGAAAAATGCTC	0.363													63	126					0	0	1	0	0
OR8J3	81168	broad.mit.edu	37	11	55904562	55904562	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55904562C>T	uc010riz.1	-	1	633	c.633G>A	c.(631-633)ATG>ATA	p.M211I		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					GAACTGTAATCATGGAAAAAA	0.358													15	85					0	0	1	0	0
OR8J3	81168	broad.mit.edu	37	11	55904769	55904769	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55904769G>A	uc010riz.1	-	1	426	c.426C>T	c.(424-426)CTC>CTT	p.L142L		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					ACACCAGCAGGAGGCAGAGCC	0.473													25	108					0	0	1	0	0
OR8J3	81168	broad.mit.edu	37	11	55904960	55904960	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55904960G>A	uc010riz.1	-	1	235	c.235C>T	c.(235-237)CCT>TCT	p.P79S		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					AGCATTTTAGGGGCAATGACA	0.418													56	102					0	0	1	0	0
OR8J3	81168	broad.mit.edu	37	11	55905119	55905119	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55905119G>A	uc010riz.1	-	1	76	c.76C>T	c.(76-78)CCC>TCC	p.P26S		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					AGGAAGAGGGGAATCTGGAGC	0.493													41	132					0	0	1	0	0
OR8K5	219453	broad.mit.edu	37	11	55926894	55926894	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55926894G>T	uc010rja.1	-	1	900	c.900C>A	c.(898-900)GCC>GCA	p.A300A		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				GCTTATAGAAGGCATTTTTCA	0.264													13	70					3.27435e-08	3.2831e-08	1	1	0
OR8K5	219453	broad.mit.edu	37	11	55927463	55927463	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:55927463C>T	uc010rja.1	-	1	331	c.331G>A	c.(331-333)GAA>AAA	p.E111K		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				ATGAAAAATTCACTGATAATG	0.418													12	117					0	0	1	0	0
OR5T2	219464	broad.mit.edu	37	11	56000536	56000536	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56000536C>T	uc010rjc.1	-	1	126	c.126G>A	c.(124-126)ATG>ATA	p.M42I		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	42	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TGACATTCTTCATGTTGAAAT	0.358													28	61					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56020050	56020050	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56020050C>T	uc010rjd.1	+	1	375	c.375C>T	c.(373-375)ATC>ATT	p.I125I		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	125	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TTTCATTTATCGGATGTGCAA	0.358													60	167					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56020463	56020463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56020463G>A	uc010rjd.1	+	1	788	c.788G>A	c.(787-789)GGA>GAA	p.G263E		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	263	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TCTGCTAAGGGAAGGCAAAAG	0.408													65	168					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56020498	56020498	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56020498C>T	uc010rjd.1	+	1	823	c.823C>T	c.(823-825)CTA>TTA	p.L275L		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	275	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TGGCTCTCACCTAACTGGAGT	0.408													59	154					0	0	1	0	0
OR5T1	390155	broad.mit.edu	37	11	56043180	56043180	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56043180C>T	uc001nio.1	+	1	66	c.66C>T	c.(64-66)ACC>ACT	p.T22T		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					CTGAAGTCACCATGTTTATAT	0.299													28	148					0	0	1	0	0
OR5T1	390155	broad.mit.edu	37	11	56043528	56043528	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56043528C>T	uc001nio.1	+	1	414	c.414C>T	c.(412-414)ATC>ATT	p.I138I		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					ATGTAGCCATCTACAACCCTC	0.428													97	184					0	0	1	0	0
OR5T1	390155	broad.mit.edu	37	11	56043908	56043908	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56043908G>A	uc001nio.1	+	1	794	c.794G>A	c.(793-795)GGG>GAG	p.G265E		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	265	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					ATTTATCATGGGACAATCCTC	0.413													65	160					0	0	1	0	0
OR8H1	219469	broad.mit.edu	37	11	56057736	56057736	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56057736C>T	uc010rje.1	-	1	803	c.803G>A	c.(802-804)GGA>GAA	p.G268E		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					TTGATCCCTTCCCAAAGAATA	0.338													36	95					0	0	1	0	0
OR8H1	219469	broad.mit.edu	37	11	56057844	56057844	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56057844C>T	uc010rje.1	-	1	695	c.695G>A	c.(694-696)GGA>GAA	p.G232E		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					TTTCTGCTTTCCTGAAGTGGA	0.383													48	100					0	0	1	0	0
OR8H1	219469	broad.mit.edu	37	11	56058019	56058019	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56058019G>A	uc010rje.1	-	1	520	c.520C>T	c.(520-522)CGT>TGT	p.R174C		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					AAAAAGTGACGAACTACATTT	0.438													30	77					0	0	1	0	0
OR8H1	219469	broad.mit.edu	37	11	56058286	56058286	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56058286A>C	uc010rje.1	-	1	253	c.253T>G	c.(253-255)TTA>GTA	p.L85V		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					GAAGTCAGTAAGTTCGCTAAG	0.418													134	346					0	0	1	0	0
OR8K3	219473	broad.mit.edu	37	11	56085986	56085986	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56085986C>T	uc010rjf.1	+	1	204	c.204C>T	c.(202-204)TTC>TTT	p.F68F		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ATCTGGCTTTCATGGATCTTG	0.383													64	164					0	0	1	0	0
OR8K3	219473	broad.mit.edu	37	11	56086308	56086308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56086308C>T	uc010rjf.1	+	1	526	c.526C>T	c.(526-528)CAT>TAT	p.H176Y		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CGTCATTAGTCATTTCTACTG	0.358													25	79					0	0	1	0	0
OR8K3	219473	broad.mit.edu	37	11	56086338	56086338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56086338C>T	uc010rjf.1	+	1	556	c.556C>T	c.(556-558)CCT>TCT	p.P186S		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CCCTTTGTTACCTTTGCTTTG	0.328													7	98					0	0	1	0	0
OR8K1	390157	broad.mit.edu	37	11	56113718	56113718	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56113718C>T	uc010rjg.1	+	1	204	c.204C>T	c.(202-204)TTC>TTT	p.F68F		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TGTACTTTTTCCTTAGACATT	0.408										HNSCC(65;0.19)			45	144					0	0	1	0	0
OR8K1	390157	broad.mit.edu	37	11	56114291	56114291	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56114291G>A	uc010rjg.1	+	1	777	c.777G>A	c.(775-777)GGG>GGA	p.G259G		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	259	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TGTTCTATGGGACATTGTTAT	0.408										HNSCC(65;0.19)			12	90					0	0	1	0	0
OR8J1	219477	broad.mit.edu	37	11	56127839	56127840	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56127839_56127840GG>AA	uc010rjh.1	+	1	117_118	c.117_118GG>AA	c.(115-120)ATGGCA>ATAACA	p.39_40MA>IT		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	39_40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GGCTGACCATGGCAGGGAACCT	0.495													47	117					0	0	1	0	0
OR8J1	219477	broad.mit.edu	37	11	56127844	56127844	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56127844G>A	uc010rjh.1	+	1	122	c.122G>A	c.(121-123)GGG>GAG	p.G41E		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ACCATGGCAGGGAACCTGGGC	0.493													48	122					0	0	1	0	0
OR8J1	219477	broad.mit.edu	37	11	56128269	56128269	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56128269C>T	uc010rjh.1	+	1	547	c.547C>T	c.(547-549)CCT>TCT	p.P183S		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TGATAATGTTCCTCTGTTAGC	0.338													24	54					0	0	1	0	0
OR5M9	390162	broad.mit.edu	37	11	56230010	56230010	+	Silent	SNP	G	A	A	rs145474756	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56230010G>A	uc010rjj.1	-	1	868	c.868C>T	c.(868-870)CTG>TTG	p.L290L		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TTATTTCTCAGACTGTAGATC	0.403													37	96					0	0	1	0	0
OR5M9	390162	broad.mit.edu	37	11	56230224	56230224	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56230224G>A	uc010rjj.1	-	1	654	c.654C>T	c.(652-654)CTC>CTT	p.L218L		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	218	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CTACTACAATGAGAGTGTAGG	0.488													6	24					0	0	1	0	0
OR5M9	390162	broad.mit.edu	37	11	56230746	56230746	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56230746G>A	uc010rjj.1	-	1	132	c.132C>T	c.(130-132)ATC>ATT	p.I44I		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TAATCAAAATGATCATACCAA	0.473													16	47					0	0	1	0	0
OR5M3	219482	broad.mit.edu	37	11	56237167	56237167	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56237167C>T	uc010rjk.1	-	1	807	c.807G>A	c.(805-807)GGG>GGA	p.G269G		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					CCACCATCTTCCCCTGCTCCA	0.463													7	33					0	0	1	0	0
OR5M3	219482	broad.mit.edu	37	11	56237279	56237279	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56237279C>T	uc010rjk.1	-	1	695	c.695G>A	c.(694-696)AGG>AAG	p.R232K		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GGCCTTCTGCCTTCCTTCTGC	0.443													27	72					0	0	1	0	0
OR5M3	219482	broad.mit.edu	37	11	56237944	56237944	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56237944G>A	uc010rjk.1	-	1	30	c.30C>T	c.(28-30)TTC>TTT	p.F10F		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					CCAAAAGAATGAACTCTGTCA	0.348													18	67					0	0	1	0	0
OR5M8	219484	broad.mit.edu	37	11	56258156	56258156	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56258156C>T	uc001nix.1	-	1	691	c.691G>A	c.(691-693)GAG>AAG	p.E231K		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					TGCCTGCCCTCTGTAGAGCGA	0.408													11	89					0	0	1	0	0
OR5M8	219484	broad.mit.edu	37	11	56258362	56258362	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56258362G>A	uc001nix.1	-	1	485	c.485C>T	c.(484-486)ACC>ATC	p.T162I		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					TAGGTTGTAGGTCCACATGGT	0.507													32	103					0	0	1	0	0
OR5M8	219484	broad.mit.edu	37	11	56258375	56258375	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56258375C>T	uc001nix.1	-	1	472	c.472G>A	c.(472-474)GAG>AAG	p.E158K		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					CACATGGTCTCCATCAGGCCA	0.512													36	94					0	0	1	0	0
OR5M11	219487	broad.mit.edu	37	11	56310108	56310108	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56310108G>A	uc010rjl.1	-	1	626	c.626C>T	c.(625-627)TCC>TTC	p.S209F		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GATGGTGAGGGAGCTGGAGAG	0.502													6	59					0	0	1	0	0
OR5M10	390167	broad.mit.edu	37	11	56344279	56344279	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56344279C>T	uc001niz.1	-	1	919	c.919G>A	c.(919-921)GGA>AGA	p.G307R		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGGATTTTCCCCTAATCATT	0.373													74	197					0	0	1	0	0
OR5M10	390167	broad.mit.edu	37	11	56344390	56344390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56344390C>T	uc001niz.1	-	1	808	c.808G>A	c.(808-810)GAG>AAG	p.E270K		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATTTTGGACTCCTCTACAGAC	0.423													64	192					0	0	1	0	0
OR5M10	390167	broad.mit.edu	37	11	56344463	56344463	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56344463C>T	uc001niz.1	-	1	735	c.735G>A	c.(733-735)CTG>CTA	p.L245L		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGACTATTGTCAGGTGGGAAG	0.428													13	137					0	0	1	0	0
OR5M1	390168	broad.mit.edu	37	11	56380062	56380062	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56380062C>A	uc001nja.1	-	1	917	c.917G>T	c.(916-918)AGG>ATG	p.R306M		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GGATTTTCCCCTAATCATTTG	0.373													29	195					2.14196e-07	2.14689e-07	1	1	0
OR5M1	390168	broad.mit.edu	37	11	56380251	56380251	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56380251G>A	uc001nja.1	-	1	728	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TGTCAGGTGGGAAGCACACGT	0.448													43	99					0	0	1	0	0
OR5M1	390168	broad.mit.edu	37	11	56380453	56380453	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56380453G>A	uc001nja.1	-	1	526	c.526C>T	c.(526-528)CAT>TAT	p.H176Y		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						CAGTAGAAATGATTGATTTCA	0.453													13	50					0	0	1	0	0
OR5M1	390168	broad.mit.edu	37	11	56380486	56380486	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56380486G>A	uc001nja.1	-	1	493	c.493C>T	c.(493-495)CAC>TAC	p.H165Y		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AAGGATAAGTGAAAGGTTAGC	0.463													15	48					0	0	1	0	0
OR5M1	390168	broad.mit.edu	37	11	56380880	56380880	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56380880C>T	uc001nja.1	-	1	99	c.99G>A	c.(97-99)GCG>GCA	p.A33A		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TTAGGTAGATCGCAAGGAATA	0.493													48	76					0	0	1	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409163	56409163	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56409163G>A	uc001njb.1	-	1	753	c.753C>T	c.(751-753)CTC>CTT	p.L251L		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TGACAGCCATGAGGTAAGAGG	0.458													28	71					0	0	1	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409824	56409824	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56409824C>T	uc001njb.1	-	1	92	c.92G>A	c.(91-93)GGA>GAA	p.G31E		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	31	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						AAAGAGGACTCCTTGTAGATC	0.413													9	95					0	0	1	0	0
OR5AR1	219493	broad.mit.edu	37	11	56431164	56431164	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56431164G>A	uc010rjm.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGAAGCAATGGATAAAGAAA	0.294													40	151					0	0	1	0	0
OR5AR1	219493	broad.mit.edu	37	11	56431918	56431918	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56431918G>A	uc010rjm.1	+	1	757	c.757G>A	c.(757-759)GGC>AGC	p.G253S		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTCTTCTATGGCACAGTCAT	0.498													8	104					0	0	1	0	0
OR9G9	504191	broad.mit.edu	37	11	56468244	56468244	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56468244G>A	uc010rjn.1	+	1	381	c.381G>A	c.(379-381)AAG>AAA	p.K127K		NM_001013358	NP_001013376	P0C7N8	OR9G9_HUMAN	olfactory receptor, family 9, subfamily G,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCATCTCCAAGCCCCTGCTTT	0.522													33	169					0	0	1	0	0
OR9G9	504191	broad.mit.edu	37	11	56468488	56468488	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56468488C>T	uc010rjn.1	+	1	625	c.625C>T	c.(625-627)CCC>TCC	p.P209S		NM_001013358	NP_001013376	P0C7N8	OR9G9_HUMAN	olfactory receptor, family 9, subfamily G,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTCATCTGCCCCGCAGTGCT	0.527													13	215					0	0	1	0	0
OR9G9	504191	broad.mit.edu	37	11	56468546	56468546	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56468546C>T	uc010rjn.1	+	1	683	c.683C>T	c.(682-684)TCC>TTC	p.S228F		NM_001013358	NP_001013376	P0C7N8	OR9G9_HUMAN	olfactory receptor, family 9, subfamily G,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGAGGATCTCCTCCTCCAAG	0.512													42	214					0	0	1	0	0
OR9G4	283189	broad.mit.edu	37	11	56510379	56510379	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56510379G>A	uc010rjo.1	-	1	909	c.909C>T	c.(907-909)CTC>CTT	p.L303L		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	303	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GGCTATAGATGAGAGGGTTGA	0.433													37	92					0	0	1	0	0
OR9G4	283189	broad.mit.edu	37	11	56510452	56510452	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56510452G>A	uc010rjo.1	-	1	836	c.836C>T	c.(835-837)TCC>TTC	p.S279F		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	279	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GGAGTAGGTGGAACTAGGCCT	0.468													36	85					0	0	1	0	0
OR9G4	283189	broad.mit.edu	37	11	56510576	56510576	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56510576G>A	uc010rjo.1	-	1	712	c.712C>T	c.(712-714)CTG>TTG	p.L238L		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	238	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AGGATAGCCAGGAGGATGTTG	0.478													10	97					0	0	1	0	0
OR9G4	283189	broad.mit.edu	37	11	56511246	56511246	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56511246C>T	uc010rjo.1	-	1	42	c.42G>A	c.(40-42)GTG>GTA	p.V14V		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CTTCCATGTCCACGGAGGTGA	0.408													32	94					0	0	1	0	0
OR9G4	283189	broad.mit.edu	37	11	56511255	56511255	+	Silent	SNP	G	A	A	rs61735257	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56511255G>A	uc010rjo.1	-	1	33	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCACGGAGGTGAAAGCCTGAC	0.413													35	98					0	0	1	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756466	56756466	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56756466C>T	uc010rjp.1	+	1	78	c.78C>T	c.(76-78)ATC>ATT	p.I26I		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TTTGGTGTATCCTCTTCATTG	0.393													41	161					0	0	1	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756742	56756742	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56756742G>A	uc010rjp.1	+	1	354	c.354G>A	c.(352-354)ATG>ATA	p.M118I		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TGGCTATGATGGCAGTGGATC	0.418													50	82					0	0	1	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757189	56757189	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56757189C>T	uc010rjp.1	+	1	801	c.801C>T	c.(799-801)TCC>TCT	p.S267S		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						CTAATAATTCCCAGGAAAATA	0.363													29	64					0	0	1	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757193	56757193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56757193G>A	uc010rjp.1	+	1	805	c.805G>A	c.(805-807)GAA>AAA	p.E269K		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TAATTCCCAGGAAAATATGAA	0.353													30	59					0	0	1	0	0
LRRC55	219527	broad.mit.edu	37	11	56949917	56949917	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56949917C>T	uc001njl.1	+	1	697	c.550C>T	c.(550-552)CAC>TAC	p.H184Y		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	154	LRR 4.					integral to membrane					0						TGGGCTAGTCCACATCGACCT	0.607													16	34					0	0	1	0	0
LRRC55	219527	broad.mit.edu	37	11	56950108	56950108	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56950108G>A	uc001njl.1	+	1	888	c.741G>A	c.(739-741)ATG>ATA	p.M247I		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	217	LRRCT.					integral to membrane					0						GCTGCACCATGGAACCCCTGC	0.632													38	102					0	0	1	0	0
LRRC55	219527	broad.mit.edu	37	11	56954746	56954746	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56954746C>T	uc001njl.1	+	2	965	c.818C>T	c.(817-819)CCT>CTT	p.P273L	LRRC55_uc001njm.1_5'Flank	NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	243	LRRCT.					integral to membrane					0						TGCCGGGGCCCTCCTGAAGTC	0.592													37	127					0	0	1	0	0
LRRC55	219527	broad.mit.edu	37	11	56954855	56954855	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:56954855C>T	uc001njl.1	+	2	1074	c.927C>T	c.(925-927)TTC>TTT	p.F309F	LRRC55_uc001njm.1_5'Flank	NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	279	Helical; (Potential).					integral to membrane					0						TCGTGGGCTTCGTGGTCTCCA	0.582													20	68					0	0	1	0	0
APLNR	187	broad.mit.edu	37	11	57003639	57003639	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57003639G>A	uc001njo.2	-	1	1289	c.840C>T	c.(838-840)CCC>CCT	p.P280P	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	280	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						CAAAGTCACAGGGCCAGTGCA	0.562													12	32					0	0	1	0	0
APLNR	187	broad.mit.edu	37	11	57003810	57003810	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57003810G>A	uc001njo.2	-	1	1118	c.669C>T	c.(667-669)TTC>TTT	p.F223F	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	223	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						TTTGGGCGATGAAGAAGTAAC	0.627													20	66					0	0	1	0	0
APLNR	187	broad.mit.edu	37	11	57003966	57003966	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57003966C>T	uc001njo.2	-	1	962	c.513G>A	c.(511-513)GGG>GGA	p.G171G	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	171	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						TCTCCAAGTCCCCGGTGGTGC	0.647													18	45					0	0	1	0	0
APLNR	187	broad.mit.edu	37	11	57004472	57004472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57004472C>T	uc001njo.2	-	1	456	c.7G>A	c.(7-9)GAA>AAA	p.E3K	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	3	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						TCACCACCTTCCTCCATGCTG	0.562													21	38					0	0	1	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57069596	57069596	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57069596G>A	uc001njr.2	-	7	5098	c.4786C>T	c.(4786-4788)CTG>TTG	p.L1596L	TNKS1BP1_uc001njp.2_Silent_p.L168L|TNKS1BP1_uc001njq.2_Silent_p.L169L|TNKS1BP1_uc001njs.2_Silent_p.L1596L	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1596	Arg/Glu/Lys-rich (charged).				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				GCCTCCGACAGGCCCAAGGTA	0.597													35	86					0	0	1	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57070091	57070091	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57070091G>A	uc001njr.2	-	6	4837	c.4525C>T	c.(4525-4527)CCG>TCG	p.P1509S	TNKS1BP1_uc001njp.2_Missense_Mutation_p.P81S|TNKS1BP1_uc001njq.2_Missense_Mutation_p.P81S|TNKS1BP1_uc001njs.2_Missense_Mutation_p.P1509S	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1509	Tankyrase-binding.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				TCAGGCTGCGGCCTCCAGGAG	0.672													4	26					0	0	1	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57080136	57080136	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57080136G>A	uc001njr.2	-	4	2338	c.2026C>T	c.(2026-2028)CCA>TCA	p.P676S	TNKS1BP1_uc001njs.2_Missense_Mutation_p.P676S|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.P127S	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	676	Pro-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				TCAGGGCCTGGAGGCTCGGGG	0.662													20	46					0	0	1	0	0
P2RX3	5024	broad.mit.edu	37	11	57117372	57117373	+	Splice_Site	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57117372_57117373GG>AA	uc001nju.2	+	7	781	c.705_splice	c.e7+1	p.T235_splice		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3						positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						TGGCGCGCACGGTGAGGACCTA	0.639											OREG0020966	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	30					0	0	1	0	0
P2RX3	5024	broad.mit.edu	37	11	57118354	57118354	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57118354C>T	uc001nju.2	+	8	900	c.824C>T	c.(823-825)TCC>TTC	p.S275F		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	275	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						AGCAGCGTGTCCCCAGGCTAC	0.552													17	74					0	0	1	0	0
P2RX3	5024	broad.mit.edu	37	11	57135874	57135874	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57135874C>T	uc001nju.2	+	10	1042	c.966C>T	c.(964-966)ATC>ATT	p.I322I		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	322	Helical; Name=2; (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						TCCCCACCATCATCAGCTCTG	0.622													43	162					0	0	1	0	0
PRG3	10394	broad.mit.edu	37	11	57146261	57146261	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57146261C>T	uc001njv.1	-	4	510	c.400G>A	c.(400-402)GGC>AGC	p.G134S		NM_006093	NP_006084	Q9Y2Y8	PRG3_HUMAN	proteoglycan 3 precursor	134	C-type lectin.				basophil activation|histamine biosynthetic process|immune response|leukotriene biosynthetic process|negative regulation of translation|neutrophil activation|positive regulation of interleukin-8 biosynthetic process|superoxide anion generation		sugar binding				0						ACAAGGTTGCCTCCGTAGCAT	0.488													20	230					0	0	1	0	0
RTN4RL2	349667	broad.mit.edu	37	11	57235131	57235131	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57235131G>A	uc010rjt.1	+	2	81	c.81G>A	c.(79-81)GCG>GCA	p.A27A		NM_178570	NP_848665	Q86UN3	R4RL2_HUMAN	reticulon 4 receptor-like 2 precursor	27					axon regeneration	anchored to plasma membrane	receptor activity				0						TGCCCCTGGCGGCCCCCAGCT	0.677													26	101					0	0	1	0	0
SLC43A1	8501	broad.mit.edu	37	11	57256424	57256424	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57256424G>A	uc001nkk.2	-	13	1492	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F	SLC43A1_uc001nkl.2_Silent_p.F458F	NM_003627	NP_003618	O75387	LAT3_HUMAN	solute carrier family 43, member 1	458	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	neutral amino acid transmembrane transporter activity				0						CTGAGTGGAAGAAACCTCGAA	0.512													13	65					0	0	1	0	0
SLC43A1	8501	broad.mit.edu	37	11	57261486	57261486	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57261486G>A	uc001nkk.2	-	8	969	c.851C>T	c.(850-852)ACC>ATC	p.T284I	SLC43A1_uc001nkl.2_Missense_Mutation_p.T284I	NM_003627	NP_003618	O75387	LAT3_HUMAN	solute carrier family 43, member 1	284					cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	neutral amino acid transmembrane transporter activity				0						GTTTTCTGAGGTGCCCCGAAC	0.577											OREG0020651	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	34					0	0	1	0	0
SLC43A1	8501	broad.mit.edu	37	11	57268309	57268309	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57268309G>A	uc001nkk.2	-	5	526	c.408C>T	c.(406-408)TTC>TTT	p.F136F	SLC43A1_uc001nkl.2_Silent_p.F136F	NM_003627	NP_003618	O75387	LAT3_HUMAN	solute carrier family 43, member 1	136	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	neutral amino acid transmembrane transporter activity				0						ACAGCGCCAGGAATATCAACG	0.587													12	27					0	0	1	0	0
SMTNL1	219537	broad.mit.edu	37	11	57310132	57310133	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57310132_57310133GG>AA	uc009ymh.1	+	2	71_72	c.71_72GG>AA	c.(70-72)GGG>GAA	p.G24E		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	6										ovary(1)	1						CAGAAGGAAGGGAAGCTCTCTG	0.55													6	26					0	0	1	0	0
SMTNL1	219537	broad.mit.edu	37	11	57317578	57317578	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57317578A>T	uc009ymh.1	+	8	1532	c.1532A>T	c.(1531-1533)AAG>ATG	p.K511M		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	493										ovary(1)	1						AAGACCAAGAAGAAGTGAGGA	0.602													8	16					0	0	1	0	0
SERPING1	710	broad.mit.edu	37	11	57367553	57367553	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57367553G>A	uc001nkp.1	+	3	444	c.253G>A	c.(253-255)GAA>AAA	p.E85K	SERPING1_uc001nkq.1_Missense_Mutation_p.E85K|SERPING1_uc010rju.1_Missense_Mutation_p.E33K|SERPING1_uc010rjv.1_Missense_Mutation_p.E90K|SERPING1_uc001nkr.1_Missense_Mutation_p.E85K|SERPING1_uc009ymi.1_Missense_Mutation_p.E85K|SERPING1_uc009ymj.1_Missense_Mutation_p.E85K|SERPING1_uc001nks.1_Intron	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	85	1.|7 X 4 AA tandem repeats of [QE]-P-T-[TQ].		Missing (in HAE; type 2).		blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						taccactgatgaacccaccac	0.119									Hereditary_Angioedema				6	27					0	0	1	0	0
SERPING1	710	broad.mit.edu	37	11	57379309	57379309	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57379309G>A	uc001nkp.1	+	7	1340	c.1149G>A	c.(1147-1149)ATG>ATA	p.M383I	SERPING1_uc001nkq.1_Missense_Mutation_p.M346I|SERPING1_uc010rju.1_Missense_Mutation_p.M331I|SERPING1_uc010rjv.1_Missense_Mutation_p.M388I|SERPING1_uc001nkr.1_Missense_Mutation_p.M383I|SERPING1_uc009ymi.1_Missense_Mutation_p.M392I|SERPING1_uc009ymj.1_Intron|SERPING1_uc001nks.1_Missense_Mutation_p.M74I	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	383					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						AGGCCATCATGGAGAAACTGG	0.498									Hereditary_Angioedema				40	119					0	0	1	0	0
YPEL4	219539	broad.mit.edu	37	11	57413472	57413472	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57413472C>T	uc001nkv.3	-	5	810	c.366G>A	c.(364-366)AAG>AAA	p.K122K	uc001nkt.1_Intron|YPEL4_uc009ymk.2_RNA	NM_145008	NP_659445	Q96NS1	YPEL4_HUMAN	yippee-like 4	122						nucleolus					0						AGCCGTTGTCCTTCACCATGT	0.547													35	68					0	0	1	0	0
CLP1	10978	broad.mit.edu	37	11	57427291	57427291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57427291C>T	uc001nkw.2	+	2	482	c.343C>T	c.(343-345)CCC>TCC	p.P115S	CLP1_uc010rjw.1_Missense_Mutation_p.P115S|CLP1_uc009yml.2_Missense_Mutation_p.P115S	NM_006831	NP_006822	Q92989	CLP1_HUMAN	ATP/GTP-binding protein isoform 1	115					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|siRNA loading onto RISC involved in RNA interference|targeting of mRNA for destruction involved in RNA interference|termination of RNA polymerase II transcription|tRNA splicing, via endonucleolytic cleavage and ligation	nucleoplasm|tRNA-intron endonuclease complex	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity			ovary(1)	1						AGAGCGAGGTCCCCGAGTGAT	0.552													14	42					0	0	1	0	0
OR9I1	219954	broad.mit.edu	37	11	57886538	57886538	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57886538G>A	uc001nml.1	-	1	379	c.379C>T	c.(379-381)CGC>TGC	p.R127C	OR9Q1_uc001nmj.2_Intron	NM_001005211	NP_001005211	Q8NGQ6	OR9I1_HUMAN	olfactory receptor, family 9, subfamily I,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Breast(21;0.0589)				AGTGGGTTGCGAATGGCAGCA	0.562													12	56					0	0	1	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947100	57947100	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57947100C>T	uc001nmj.2	+	3	500	c.184C>T	c.(184-186)CTT>TTT	p.L62F		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				AATGTATTTCCTTCTGAGTCA	0.468													38	178					0	0	1	0	0
OR1S2	219958	broad.mit.edu	37	11	57970781	57970781	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57970781G>A	uc010rkb.1	-	1	873	c.873C>T	c.(871-873)TTC>TTT	p.F291F		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	291	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TCACCACAGTGAATAGGACAG	0.453													60	123					0	0	1	0	0
OR1S2	219958	broad.mit.edu	37	11	57970952	57970952	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57970952G>A	uc010rkb.1	-	1	702	c.702C>T	c.(700-702)ATC>ATT	p.I234I		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CAGCTCTGATGATGCAGACAT	0.438													20	60					0	0	1	0	0
OR1S1	219959	broad.mit.edu	37	11	57982295	57982295	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57982295C>T	uc010rkc.1	+	1	79	c.79C>T	c.(79-81)CTC>TTC	p.L27F		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	27	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TGAATTCATTCTCCTGGGATT	0.413													53	125					0	0	1	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995648	57995648	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:57995648G>A	uc010rkd.1	-	1	700	c.700C>T	c.(700-702)CGT>TGT	p.R234C		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				TCGGCAGAACGGATGCTCAGG	0.627													20	47					0	0	1	0	0
OR10W1	81341	broad.mit.edu	37	11	58034458	58034458	+	Silent	SNP	G	A	A	rs146836599		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58034458G>A	uc001nmq.1	-	1	1275	c.873C>T	c.(871-873)GCC>GCT	p.A291A		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CTCTCCCTACGGCCCCTTTCA	0.517													34	82					0	0	1	0	0
OR10W1	81341	broad.mit.edu	37	11	58035215	58035215	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58035215G>A	uc001nmq.1	-	1	518	c.116C>T	c.(115-117)TCC>TTC	p.S39F		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	39	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TGTGTGAATGGACACCACAAT	0.488													22	60					0	0	1	0	0
OR5B17	219965	broad.mit.edu	37	11	58125676	58125676	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58125676G>A	uc010rke.1	-	1	867	c.867C>T	c.(865-867)ACC>ACT	p.T289T		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TGTTCCTCAGGGTATAGACTA	0.388													63	136					0	0	1	0	0
OR5B3	441608	broad.mit.edu	37	11	58170118	58170118	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58170118G>A	uc010rkf.1	-	1	765	c.765C>T	c.(763-765)TTC>TTT	p.F255F		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GTAAGTACATGAAGATAATAG	0.463													18	81					0	0	1	0	0
OR5B3	441608	broad.mit.edu	37	11	58170406	58170406	+	Silent	SNP	C	T	T	rs141530938		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58170406C>T	uc010rkf.1	-	1	477	c.477G>A	c.(475-477)GGG>GGA	p.G159G		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TAAATGTGTCCCCAGTGTGGA	0.453													26	134					0	0	1	0	0
OR5B3	441608	broad.mit.edu	37	11	58170503	58170503	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58170503G>A	uc010rkf.1	-	1	380	c.380C>T	c.(379-381)CCC>CTC	p.P127L		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GTAATGTAGGGGTTTGCACAC	0.498													46	104					0	0	1	0	0
OR5B2	390190	broad.mit.edu	37	11	58189862	58189862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58189862C>T	uc010rkg.1	-	1	873	c.873G>A	c.(871-873)AGG>AGA	p.R291R		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CTTCTCTGTTCCTCAGGCTGT	0.418													32	62					0	0	1	0	0
OR5B2	390190	broad.mit.edu	37	11	58190468	58190468	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58190468G>A	uc010rkg.1	-	1	267	c.267C>T	c.(265-267)GTC>GTT	p.V89V		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TGTAGGAGATGACCTTGTCTC	0.488													45	122					0	0	1	0	0
OR5B12	390191	broad.mit.edu	37	11	58207358	58207358	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58207358G>A	uc010rkh.1	-	1	267	c.267C>T	c.(265-267)TTC>TTT	p.F89F		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TATATAATATGAATTTGTCTC	0.453													24	60					0	0	1	0	0
OR5B12	390191	broad.mit.edu	37	11	58207538	58207538	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58207538G>A	uc010rkh.1	-	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AGATGAAAAGGAAGACTATGA	0.458													25	89					0	0	1	0	0
GLYATL2	219970	broad.mit.edu	37	11	58604639	58604639	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58604639C>T	uc001nnd.3	-	5	456	c.325G>A	c.(325-327)GGC>AGC	p.G109S	GLYATL2_uc009ymq.2_Missense_Mutation_p.G109S	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	109						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	TCATCCAAGCCCTCTTGGCAA	0.393													51	131					0	0	1	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722323	58722323	+	Silent	SNP	G	A	A	rs7478799		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58722323G>A	uc001nnf.2	+	6	643	c.267G>A	c.(265-267)TTG>TTA	p.L89L	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Silent_p.L120L|GLYATL1_uc001nni.1_Silent_p.L89L|GLYATL1_uc001nnj.1_Silent_p.L89L			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	89						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	AAGAAGTTTTGAAAAATTGTG	0.338													25	50					0	0	1	0	0
GLYATL1	92292	broad.mit.edu	37	11	58723158	58723158	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58723158G>A	uc001nnf.2	+	8	943	c.567G>A	c.(565-567)GGG>GGA	p.G189G	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Silent_p.G220G|GLYATL1_uc001nni.1_Silent_p.G189G|GLYATL1_uc001nnj.1_Silent_p.G189G			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	189						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	GGAAGCGAGGGAAGAATGAGA	0.498													16	72					0	0	1	0	0
GLYATL1	92292	broad.mit.edu	37	11	58723410	58723410	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58723410C>T	uc001nnf.2	+	8	1195	c.819C>T	c.(817-819)TCC>TCT	p.S273S	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Silent_p.S304S|GLYATL1_uc001nni.1_Silent_p.S273S|GLYATL1_uc001nnj.1_Silent_p.S273S			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	273						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	ATGAAGACTCCCGCAGATTTG	0.453													21	77					0	0	1	0	0
FAM111A	63901	broad.mit.edu	37	11	58920793	58920793	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58920793C>T	uc010rkp.1	+	5	1879	c.1652C>T	c.(1651-1653)TCA>TTA	p.S551L	FAM111A_uc010rkq.1_Missense_Mutation_p.S551L|FAM111A_uc010rkr.1_Missense_Mutation_p.S551L|FAM111A_uc001nno.2_Missense_Mutation_p.S551L|FAM111A_uc001nnp.2_Missense_Mutation_p.S551L|FAM111A_uc001nnq.2_Missense_Mutation_p.S551L	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	551					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				TCAAAAGGTTCATTGGTGGCC	0.428													59	131					0	0	1	0	0
MPEG1	219972	broad.mit.edu	37	11	58978287	58978287	+	Silent	SNP	C	T	T	rs144610063		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58978287C>T	uc001nnu.3	-	1	2208	c.2052G>A	c.(2050-2052)AAG>AAA	p.K684K		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	684	Cytoplasmic (Potential).					integral to membrane		p.K684K(1)		ovary(1)|skin(1)	2		all_epithelial(135;0.125)				GATATGCTTTCTTCTTGAACT	0.542													28	84					0	0	1	0	0
MPEG1	219972	broad.mit.edu	37	11	58980191	58980192	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:58980191_58980192CC>TT	uc001nnu.3	-	1	303_304	c.147_148GG>AA	c.(145-150)GGGGGC>GGAAGC	p.G50S		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	50	MACPF.|Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				TTGTCCCAGCCCCCTCCAGGTA	0.495													71	157					0	0	1	0	0
OR5AN1	390195	broad.mit.edu	37	11	59131945	59131945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59131945G>A	uc010rks.1	+	1	14	c.14G>A	c.(13-15)GGA>GAA	p.G5E		NM_001004729	NP_001004729	Q8NGI8	O5AN1_HUMAN	olfactory receptor, family 5, subfamily AN,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACTGGGGGAGGAAATATTACA	0.398													18	50					0	0	1	0	0
OR5AN1	390195	broad.mit.edu	37	11	59132522	59132522	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59132522G>A	uc010rks.1	+	1	591	c.591G>A	c.(589-591)CAG>CAA	p.Q197Q		NM_001004729	NP_001004729	Q8NGI8	O5AN1_HUMAN	olfactory receptor, family 5, subfamily AN,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCTTTGTACAGGTCATGACTG	0.408													55	113					0	0	1	0	0
OR5A2	219981	broad.mit.edu	37	11	59189495	59189495	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59189495C>T	uc010rkt.1	-	1	932	c.932G>A	c.(931-933)GGG>GAG	p.G311E		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	311	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGAGAAATCCCGGGGTCCCT	0.413													48	113					0	0	1	0	0
OR5A2	219981	broad.mit.edu	37	11	59189838	59189838	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59189838C>T	uc010rkt.1	-	1	589	c.589G>A	c.(589-591)GAG>AAG	p.E197K		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTCACCACCTCGCTGGTGAAG	0.478													32	46					0	0	1	0	0
OR5A2	219981	broad.mit.edu	37	11	59190271	59190271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59190271C>T	uc010rkt.1	-	1	156	c.156G>A	c.(154-156)ATG>ATA	p.M52I		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGTGAGAGTCCATCTTAATGA	0.488													11	82					0	0	1	0	0
OR5A1	219982	broad.mit.edu	37	11	59210841	59210841	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59210841G>A	uc001nnx.1	+	1	200	c.200G>A	c.(199-201)AGC>AAC	p.S67N		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						TTCTTCCTAAGCAACTTATCT	0.483													56	150					0	0	1	0	0
OR5A1	219982	broad.mit.edu	37	11	59211041	59211041	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59211041C>T	uc001nnx.1	+	1	400	c.400C>T	c.(400-402)CTC>TTC	p.L134F		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						CAGCCCCCTTCTCTACCCCAC	0.547													72	278					0	0	1	0	0
OR5A1	219982	broad.mit.edu	37	11	59211264	59211264	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59211264C>T	uc001nnx.1	+	1	623	c.623C>T	c.(622-624)ACT>ATT	p.T208I		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						GTGGTGGTCACTGTCGGAGGA	0.527													47	144					0	0	1	0	0
OR4D6	219983	broad.mit.edu	37	11	59224523	59224523	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59224523C>T	uc010rku.1	+	1	90	c.90C>T	c.(88-90)GTC>GTT	p.V30V		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTTTGTGGTCTTCTTTGCTG	0.463													41	120					0	0	1	0	0
OR4D10	390197	broad.mit.edu	37	11	59245655	59245655	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59245655C>T	uc001nnz.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCCTGCATTTCGTGCCCTGCA	0.547													77	186					0	0	1	0	0
OR4D11	219986	broad.mit.edu	37	11	59271300	59271300	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59271300C>T	uc001noa.1	+	1	252	c.252C>T	c.(250-252)GAC>GAT	p.D84D		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTTGCTGGACCTTCTGTCAA	0.478													92	241					0	0	1	0	0
OR4D11	219986	broad.mit.edu	37	11	59271747	59271747	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59271747G>A	uc001noa.1	+	1	699	c.699G>A	c.(697-699)AGG>AGA	p.R233R		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GAGGGGGCAGGAGGAAAGCCA	0.552													81	166					0	0	1	0	0
OR4D11	219986	broad.mit.edu	37	11	59271775	59271775	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59271775C>T	uc001noa.1	+	1	727	c.727C>T	c.(727-729)CAC>TAC	p.H243Y		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTGCACCTCCCACATCACTGT	0.552													86	216					0	0	1	0	0
OR4D9	390199	broad.mit.edu	37	11	59282416	59282416	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59282416G>A	uc010rkv.1	+	1	31	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGAGTGAAAGAATTTACCTT	0.378													48	111					0	0	1	0	0
OR4D9	390199	broad.mit.edu	37	11	59282476	59282476	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59282476C>T	uc010rkv.1	+	1	91	c.91C>T	c.(91-93)CTG>TTG	p.L31L		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATTTACCTTCCTGTTTTTGGT	0.433													11	204					0	0	1	0	0
OR4D9	390199	broad.mit.edu	37	11	59282609	59282609	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59282609C>T	uc010rkv.1	+	1	224	c.224C>T	c.(223-225)TCC>TTC	p.S75F		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCTTTTCCTCCATCACAGCT	0.458													17	187					0	0	1	0	0
OR4D9	390199	broad.mit.edu	37	11	59283076	59283076	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59283076G>A	uc010rkv.1	+	1	691	c.691G>A	c.(691-693)GAA>AAA	p.E231K		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCACACTGGGGAAGGCAGGAG	0.502													26	262					0	0	1	0	0
PATL1	219988	broad.mit.edu	37	11	59406585	59406585	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59406585G>A	uc001noe.3	-	18	2370	c.2227C>T	c.(2227-2229)CTA>TTA	p.L743L		NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	743	Region C.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						AGGGACACTAGGTTTGTAGGT	0.488													13	48					0	0	1	0	0
PATL1	219988	broad.mit.edu	37	11	59423479	59423479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59423479G>A	uc001noe.3	-	7	906	c.763C>T	c.(763-765)CCT>TCT	p.P255S	PATL1_uc009yms.1_Intron|PATL1_uc010rkw.1_Intron	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	255	Pro-rich.|Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						AGAACAGGAGGAACACTAGGA	0.423													5	13					0	0	1	0	0
OR10V1	390201	broad.mit.edu	37	11	59480873	59480873	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59480873G>A	uc001nof.1	-	1	446	c.446C>T	c.(445-447)TCC>TTC	p.S149F		NM_001005324	NP_001005324	Q8NGI7	O10V1_HUMAN	olfactory receptor, family 10, subfamily V,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGCACCAAGGAGCCTACCAG	0.498													13	29					0	0	1	0	0
GIF	2694	broad.mit.edu	37	11	59610056	59610056	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59610056C>T	uc001noi.2	-	4	419	c.371G>A	c.(370-372)AGC>AAC	p.S124N	GIF_uc010rkz.1_3'UTR	NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	124					cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						AGCGTTGGGGCCTCCGAAGGG	0.517													22	46					0	0	1	0	0
TCN1	6947	broad.mit.edu	37	11	59630139	59630139	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59630139G>A	uc001noj.2	-	3	414	c.316C>T	c.(316-318)CGT>TGT	p.R106C		NM_001062	NP_001053	P20061	TCO1_HUMAN	transcobalamin I precursor	106					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular region	cobalamin binding			ovary(2)	2		all_epithelial(135;0.198)			Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TCAGCGTTACGACATACTCCC	0.358													33	106					0	0	1	0	0
MS4A3	932	broad.mit.edu	37	11	59828646	59828646	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59828646G>A	uc001nom.2	+	2	141	c.13G>A	c.(13-15)GAA>AAA	p.E5K	MS4A3_uc001non.2_Missense_Mutation_p.E5K|MS4A3_uc001noo.2_Intron	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	5	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				GGCCTCCCACGAAGTTGATAA	0.483													25	67					0	0	1	0	0
MS4A3	932	broad.mit.edu	37	11	59829943	59829943	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59829943C>T	uc001nom.2	+	3	287	c.159C>T	c.(157-159)GCC>GCT	p.A53A	MS4A3_uc001non.2_Intron|MS4A3_uc001noo.2_Intron	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	53	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				TCTTTCAGGCCATCCAGATCC	0.433													36	88					0	0	1	0	0
MS4A3	932	broad.mit.edu	37	11	59830030	59830030	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59830030C>T	uc001nom.2	+	3	374	c.246C>T	c.(244-246)TTC>TTT	p.F82F	MS4A3_uc001non.2_Intron|MS4A3_uc001noo.2_Intron	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	82	Poly-Phe.|Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				AAAAGCACTTCTTTTTCTTCA	0.453													53	116					0	0	1	0	0
MS4A2	2206	broad.mit.edu	37	11	59857212	59857212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59857212C>T	uc001nop.2	+	2	206	c.104C>T	c.(103-105)TCA>TTA	p.S35L	MS4A2_uc009ymu.2_Missense_Mutation_p.S35L	NM_000139	NP_000130	Q01362	FCERB_HUMAN	membrane-spanning 4-domains, subfamily A, member	35	Cytoplasmic (Potential).				cell proliferation|humoral immune response	integral to plasma membrane	calcium channel activity			ovary(1)	1		all_epithelial(135;0.245)			Omalizumab(DB00043)	GAAGTATCTTCAGGCAGACTA	0.468													36	77					0	0	1	0	0
MS4A6A	64231	broad.mit.edu	37	11	59940507	59940507	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59940507G>A	uc001nor.2	-	6	883	c.645C>T	c.(643-645)TTC>TTT	p.F215F	MS4A6A_uc001noq.2_3'UTR|MS4A6A_uc001nos.3_Silent_p.F243F|MS4A6A_uc009ymv.2_Silent_p.F215F|MS4A6A_uc001not.2_Silent_p.F215F|MS4A6A_uc010rla.1_Silent_p.F243F|MS4A6A_uc010rlb.1_Silent_p.F170F	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	215	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						TCACCCCAGGGAAGTCAGAGT	0.507													31	165					0	0	1	0	0
MS4A6A	64231	broad.mit.edu	37	11	59949119	59949119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:59949119C>T	uc001nor.2	-	2	320	c.82G>A	c.(82-84)GAA>AAA	p.E28K	MS4A6A_uc001noq.2_Missense_Mutation_p.E28K|MS4A6A_uc001nos.3_Missense_Mutation_p.E56K|MS4A6A_uc009ymv.2_Missense_Mutation_p.E28K|MS4A6A_uc001not.2_Missense_Mutation_p.E28K|MS4A6A_uc010rla.1_Missense_Mutation_p.E56K|MS4A6A_uc010rlb.1_Missense_Mutation_p.E28K	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	28	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						TTGGTGGGTTCGGGTTTCTCT	0.463													57	127					0	0	1	0	0
MS4A6E	245802	broad.mit.edu	37	11	60105304	60105304	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60105304C>T	uc001npd.2	+	2	252	c.238C>T	c.(238-240)CCT>TCT	p.P80S		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	80	Extracellular (Potential).					integral to membrane	receptor activity				0						TGCATTAAATCCTGCCTCATT	0.473													34	115					0	0	1	0	0
MS4A6E	245802	broad.mit.edu	37	11	60105331	60105331	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60105331G>A	uc001npd.2	+	2	279	c.265G>A	c.(265-267)GAA>AAA	p.E89K		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	89	Extracellular (Potential).					integral to membrane	receptor activity				0						TAAGTTGGACGAAAAGGATAT	0.453													53	102					0	0	1	0	0
MS4A6E	245802	broad.mit.edu	37	11	60105379	60105379	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60105379C>T	uc001npd.2	+	2	327	c.313C>T	c.(313-315)CCT>TCT	p.P105S		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	105	Extracellular (Potential).					integral to membrane	receptor activity				0						TTATCATTCACCTTACACCAT	0.408													30	92					0	0	1	0	0
MS4A14	84689	broad.mit.edu	37	11	60164109	60164109	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60164109G>A	uc001npj.2	+	1	623	c.58G>A	c.(58-60)GAA>AAA	p.E20K	MS4A14_uc001npi.2_Intron|MS4A14_uc001npn.2_5'UTR|MS4A14_uc001npk.2_Missense_Mutation_p.E20K|MS4A14_uc001npl.2_5'UTR|MS4A14_uc001npm.2_5'UTR	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	20						integral to membrane	receptor activity			breast(1)	1						AAAACCAAACGAAACTGTATT	0.458													12	32					0	0	1	0	0
MS4A14	84689	broad.mit.edu	37	11	60183867	60183867	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60183867G>A	uc001npj.2	+	5	1991	c.1426G>A	c.(1426-1428)GAA>AAA	p.E476K	MS4A14_uc001npi.2_Missense_Mutation_p.E364K|MS4A14_uc001npn.2_Missense_Mutation_p.E214K|MS4A14_uc001npk.2_Missense_Mutation_p.E459K|MS4A14_uc001npl.2_Missense_Mutation_p.E214K|MS4A14_uc001npm.2_Missense_Mutation_p.E214K	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	476	Gln-rich.					integral to membrane	receptor activity			breast(1)	1						ATCTGAGGAGGAACTCCATAG	0.383													12	98					0	0	1	0	0
MS4A14	84689	broad.mit.edu	37	11	60184221	60184221	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60184221G>A	uc001npj.2	+	5	2345	c.1780G>A	c.(1780-1782)GAG>AAG	p.E594K	MS4A14_uc001npi.2_Missense_Mutation_p.E482K|MS4A14_uc001npn.2_Missense_Mutation_p.E332K|MS4A14_uc001npk.2_Missense_Mutation_p.E577K|MS4A14_uc001npl.2_Missense_Mutation_p.E332K|MS4A14_uc001npm.2_Missense_Mutation_p.E332K	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	594	Gln-rich.					integral to membrane	receptor activity			breast(1)	1						GACTGATAAGGAGCAAAACTC	0.463													14	33					0	0	1	0	0
MS4A10	341116	broad.mit.edu	37	11	60557857	60557857	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60557857C>T	uc001npz.1	+	2	145	c.49C>T	c.(49-51)CCA>TCA	p.P17S		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	17	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						TAGGGGGCTCCCATCATGGCA	0.617													30	86					0	0	1	0	0
MS4A10	341116	broad.mit.edu	37	11	60557969	60557969	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60557969G>A	uc001npz.1	+	2	257	c.161G>A	c.(160-162)AGC>AAC	p.S54N		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	54	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						CAGAAGAAGAGCAGCCTTCTT	0.632													23	63					0	0	1	0	0
ZP1	22917	broad.mit.edu	37	11	60635212	60635212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60635212C>T	uc001nqd.2	+	1	198	c.178C>T	c.(178-180)CTC>TTC	p.L60F	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	60	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						AGGCCAGACTCTCCGCTTCAA	0.677													14	19					0	0	1	0	0
ZP1	22917	broad.mit.edu	37	11	60637186	60637186	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60637186C>T	uc001nqd.2	+	3	515	c.495C>T	c.(493-495)CTC>CTT	p.L165L	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	165	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						TTTCCTTCCTCCCCACCTCTG	0.617													16	33					0	0	1	0	0
ZP1	22917	broad.mit.edu	37	11	60643116	60643116	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60643116G>A	uc001nqd.2	+	12	1924	c.1904G>A	c.(1903-1905)AGC>AAC	p.S635N	ZP1_uc001nqe.2_Missense_Mutation_p.S342N	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	635	Cytoplasmic (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						CTCTGGGAAAGCAACAGACAG	0.493													14	34					0	0	1	0	0
TMEM109	79073	broad.mit.edu	37	11	60689298	60689298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60689298C>T	uc001nqg.2	+	4	771	c.393C>T	c.(391-393)TTC>TTT	p.F131F	TMEM109_uc001nqh.2_Silent_p.F131F|TMEM132A_uc001nqi.2_5'Flank|TMEM132A_uc001nqj.2_5'Flank	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	131						integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						TCCAGACCTTCCTGCTGTGGG	0.632													54	108					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60695126	60695126	+	Missense_Mutation	SNP	G	A	A	rs144704995	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60695126G>A	uc001nqj.2	+	3	522	c.329G>A	c.(328-330)CGA>CAA	p.R110Q	TMEM132A_uc001nqi.2_Missense_Mutation_p.R110Q|TMEM132A_uc001nqk.2_Missense_Mutation_p.R123Q|TMEM132A_uc001nql.1_Missense_Mutation_p.R123Q	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	110	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GTCCCCCCTCGAGTCACTGAG	0.602													78	168					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60696259	60696259	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60696259C>T	uc001nqj.2	+	4	886	c.693C>T	c.(691-693)GCC>GCT	p.A231A	TMEM132A_uc001nqi.2_Silent_p.A231A|TMEM132A_uc001nqk.2_Silent_p.A244A|TMEM132A_uc001nql.1_Silent_p.A244A	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	231	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GGGAGCAGGCCCTCCCAGTGG	0.701													12	20					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60696263	60696263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60696263C>T	uc001nqj.2	+	4	890	c.697C>T	c.(697-699)CCA>TCA	p.P233S	TMEM132A_uc001nqi.2_Missense_Mutation_p.P233S|TMEM132A_uc001nqk.2_Missense_Mutation_p.P246S|TMEM132A_uc001nql.1_Missense_Mutation_p.P246S	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	233	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GCAGGCCCTCCCAGTGGGGGG	0.701													11	22					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60699279	60699279	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60699279G>A	uc001nqj.2	+	6	1328	c.1135G>A	c.(1135-1137)GAA>AAA	p.E379K	TMEM132A_uc001nqi.2_Missense_Mutation_p.E380K|TMEM132A_uc001nqk.2_Missense_Mutation_p.E392K|TMEM132A_uc001nql.1_Missense_Mutation_p.E392K|TMEM132A_uc001nqm.2_5'Flank	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	379	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CCAGGCCCCTGAAGCAGAGAA	0.592													48	101					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60702830	60702830	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60702830C>T	uc001nqj.2	+	10	2136	c.1943C>T	c.(1942-1944)TCG>TTG	p.S648L	TMEM132A_uc001nqi.2_Missense_Mutation_p.S649L|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	648	Binds to HSPA5/GRP78 (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						ATGGGCATCTCGCTGACCTTG	0.662													7	26					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60703555	60703555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60703555C>T	uc001nqj.2	+	11	2441	c.2248C>T	c.(2248-2250)CGG>TGG	p.R750W	TMEM132A_uc001nqi.2_Missense_Mutation_p.R751W|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	750	Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GCCCTGCCGCCGGGGCCGCCA	0.746													4	22					0	0	1	0	0
SLC15A3	51296	broad.mit.edu	37	11	60708742	60708742	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60708742G>A	uc001nqn.2	-	5	1362	c.1128C>T	c.(1126-1128)CTC>CTT	p.L376L	SLC15A3_uc001nqo.2_Intron	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	376	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						CATTGGCCAGGAGGAGCCAGG	0.423													11	26					0	0	1	0	0
SLC15A3	51296	broad.mit.edu	37	11	60711204	60711204	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60711204G>A	uc001nqn.2	-	3	1187	c.953C>T	c.(952-954)CCC>CTC	p.P318L	SLC15A3_uc001nqo.2_Missense_Mutation_p.P318L	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	318	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						CACCATGACGGGCAAGATCTT	0.612													6	18					0	0	1	0	0
SLC15A3	51296	broad.mit.edu	37	11	60711215	60711215	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60711215C>T	uc001nqn.2	-	3	1176	c.942G>A	c.(940-942)GTG>GTA	p.V314V	SLC15A3_uc001nqo.2_Silent_p.V314V	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	314	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						GCAAGATCTTCACCAGCACCT	0.617													5	14					0	0	1	0	0
CD6	923	broad.mit.edu	37	11	60785320	60785320	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60785320C>T	uc001nqq.2	+	11	1895	c.1672C>T	c.(1672-1674)CCG>TCG	p.P558S	CD6_uc001nqp.2_Missense_Mutation_p.P558S|CD6_uc001nqr.2_Missense_Mutation_p.P526S|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Missense_Mutation_p.P517S	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	558	Cytoplasmic (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						TCAGTATCACCCGAGGAGCAA	0.552													35	84					0	0	1	0	0
CD6	923	broad.mit.edu	37	11	60785797	60785797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60785797C>T	uc001nqq.2	+	12	2097	c.1874C>T	c.(1873-1875)TCC>TTC	p.S625F	CD6_uc001nqp.2_Missense_Mutation_p.S624F|CD6_uc001nqr.2_Intron|CD6_uc001nqs.2_Intron|CD6_uc001nqt.2_Intron	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	625	Cytoplasmic (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						AGCACCTCATCCGGGGAGTGG	0.592													8	19					0	0	1	0	0
CD5	921	broad.mit.edu	37	11	60886927	60886927	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:60886927G>A	uc009ynk.2	+	5	788	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_014207	NP_055022	P06127	CD5_HUMAN	CD5 molecule precursor	229	Extracellular (Potential).|SRCR 2.				cell proliferation|cell recognition	integral to plasma membrane	scavenger receptor activity			ovary(1)	1		all_lung(304;5.94e-05)|Lung NSC(402;7.26e-05)		BRCA - Breast invasive adenocarcinoma(625;0.000946)|Lung(977;0.0086)|LUSC - Lung squamous cell carcinoma(625;0.0528)		GGAGCCACGGGAACACCAGCC	0.557													20	56					0	0	1	0	0
PGA5	5222	broad.mit.edu	37	11	61015963	61015963	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61015963G>A	uc001nqz.2	+	6	759	c.729G>A	c.(727-729)TGG>TGA	p.W243*		NM_014224	NP_055039	P00790	PEPA_HUMAN	pepsinogen 5, group I precursor	243					digestion|proteolysis	extracellular region	aspartic-type endopeptidase activity			skin(1)	1						GTCTGAACTGGGTGCCTGTTA	0.547													81	206					0	0	1	0	0
VWCE	220001	broad.mit.edu	37	11	61034973	61034973	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61034973G>A	uc001nra.2	-	16	2205	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	642	VWFC 5.					extracellular region	calcium ion binding			ovary(1)	1						GCACAGACGGGAAGGTCTCGT	0.597													21	76					0	0	1	0	0
VWCE	220001	broad.mit.edu	37	11	61053825	61053825	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61053825G>A	uc001nra.2	-	5	781	c.502C>T	c.(502-504)CCG>TCG	p.P168S	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	168	EGF-like 2; calcium-binding (Potential).					extracellular region	calcium ion binding			ovary(1)	1						TGCATGCCCGGCCCACACTCG	0.517													75	139					0	0	1	0	0
DAK	26007	broad.mit.edu	37	11	61106811	61106811	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61106811C>T	uc001nre.2	+	5	647	c.390C>T	c.(388-390)ATC>ATT	p.I130I	DDB1_uc010rlf.1_Intron|DAK_uc009ynm.1_Silent_p.I60I	NM_015533	NP_056348	Q3LXA3	DHAK_HUMAN	dihydroxyacetone kinase 2	130	DhaK.				glycerol metabolic process	cytosol	ATP binding|FAD-AMP lyase (cyclizing) activity|glycerone kinase activity|metal ion binding				0						CTGAAGGCATCCCGGTGGAGA	0.652													14	113					0	0	1	0	0
SDHAF2	54949	broad.mit.edu	37	11	61213508	61213508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61213508C>T	uc001nrt.2	+	4	488	c.466C>T	c.(466-468)CCA>TCA	p.P156S		NM_017841	NP_060311	Q9NX18	SDHF2_HUMAN	succinate dehydrogenase complex assembly factor	156					mitochondrial electron transport, succinate to ubiquinone|protein-FAD linkage	mitochondrion	protein binding			ovary(2)	2						ACTGCGTGCCCCAGATCTTGA	0.473									Familial_Paragangliomas		OREG0021000	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	91					0	0	1	0	0
C11orf66	220004	broad.mit.edu	37	11	61249308	61249308	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61249308C>T	uc001nru.1	+	2	152	c.27C>T	c.(25-27)GTC>GTT	p.V9V	C11orf66_uc009ynq.1_Silent_p.V9V	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	9										ovary(1)	1						CCCTGGGGGTCGTCTCCCCTT	0.637													5	30					0	0	1	0	0
C11orf66	220004	broad.mit.edu	37	11	61257301	61257301	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61257301G>A	uc001nru.1	+	12	1216	c.1091G>A	c.(1090-1092)CGA>CAA	p.R364Q	C11orf66_uc009ynq.1_Missense_Mutation_p.R344Q	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	364										ovary(1)	1						GGCTGGACTCGAGGTGGCATC	0.642													14	34					0	0	1	0	0
SYT7	9066	broad.mit.edu	37	11	61290624	61290624	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61290624C>T	uc001nrv.2	-	8	1036	c.1030G>A	c.(1030-1032)GAG>AAG	p.E344K	SYT7_uc009ynr.2_Missense_Mutation_p.E419K	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	344	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						CTCAGCTTCTCCGTGGGGATA	0.547													30	94					0	0	1	0	0
SYT7	9066	broad.mit.edu	37	11	61291930	61291930	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61291930C>T	uc001nrv.2	-	6	703	c.697G>A	c.(697-699)GAC>AAC	p.D233N	SYT7_uc009ynr.2_Missense_Mutation_p.D308N	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	233	C2 1.|Cytoplasmic (Potential).	Calcium 2 (By similarity).|Calcium 3 (By similarity).				cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						CCAATGGGGTCGTTGCGGCTG	0.547													13	47					0	0	1	0	0
SYT7	9066	broad.mit.edu	37	11	61291963	61291963	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61291963G>A	uc001nrv.2	-	6	670	c.664C>T	c.(664-666)CAA>TAA	p.Q222*	SYT7_uc009ynr.2_Nonsense_Mutation_p.Q297*	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	222	C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						TCCAGGACTTGGAGGTAGAGG	0.587													6	58					0	0	1	0	0
DAGLA	747	broad.mit.edu	37	11	61511339	61511339	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61511339C>T	uc001nsa.2	+	20	2618	c.2507C>T	c.(2506-2508)TCG>TTG	p.S836L		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	836	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		TCCCTGAGCTCGCGCACTGAG	0.672													99	255					0	0	1	0	0
C11orf9	745	broad.mit.edu	37	11	61533562	61533562	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61533562C>T	uc001nsc.1	+	3	363	c.267C>T	c.(265-267)CCC>CCT	p.P89P	C11orf9_uc001nse.1_Silent_p.P80P	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	89	Pro-rich.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						GCCATGGTCCCCTCCCACCCC	0.741													7	30					0	0	1	0	0
C11orf9	745	broad.mit.edu	37	11	61533565	61533565	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61533565C>T	uc001nsc.1	+	3	366	c.270C>T	c.(268-270)CTC>CTT	p.L90L	C11orf9_uc001nse.1_Silent_p.L81L	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	90	Pro-rich.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						ATGGTCCCCTCCCACCCCCGG	0.736													12	26					0	0	1	0	0
C11orf9	745	broad.mit.edu	37	11	61533631	61533631	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61533631G>A	uc001nsc.1	+	3	432	c.336G>A	c.(334-336)AAG>AAA	p.K112K	C11orf9_uc001nse.1_Silent_p.K103K	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	112	Pro-rich.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CTGCCCCCAAGCCCTTCCCGG	0.642													19	45					0	0	1	0	0
FADS2	9415	broad.mit.edu	37	11	61596039	61596039	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:61596039C>T	uc001nsl.1	+	1	327	c.177C>T	c.(175-177)GTC>GTT	p.V59V	FADS2_uc001nsj.2_Intron|FADS2_uc010rlo.1_Intron|FADS2_uc001nsk.2_Silent_p.V59V	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	59	Cytoplasmic (Potential).|Cytochrome b5 heme-binding.				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	GCCAGCGGGTCATCGGGCACT	0.622											OREG0021015	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	27					0	0	1	0	0
SCGB1D4	404552	broad.mit.edu	37	11	62065000	62065000	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62065000C>T	uc001ntd.1	-	2	240	c.186G>A	c.(184-186)GTG>GTA	p.V62V		NM_206998	NP_996881	Q6XE38	SG1D4_HUMAN	secretoglobin family 1D member 4 precursor	62						extracellular region	binding				0						TGCAGTGCTTCACTTCCAACT	0.428													97	261					0	0	1	0	0
ASRGL1	80150	broad.mit.edu	37	11	62123837	62123837	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62123837G>A	uc001nte.3	+	3	515	c.231G>A	c.(229-231)ATG>ATA	p.M77I	ASRGL1_uc001ntf.3_Missense_Mutation_p.M77I|ASRGL1_uc001ntg.3_Intron|ASRGL1_uc001nth.1_5'Flank	NM_025080	NP_079356	Q7L266	ASGL1_HUMAN	asparaginase-like 1	77					asparagine catabolic process via L-aspartate|protein maturation	cytoplasm|microtubule cytoskeleton|nucleus	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0					L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)	AGGTTGAAATGGATGCTAGTA	0.373													40	111					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62286062	62286063	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62286062_62286063GG>AA	uc001ntl.2	-	5	16126_16127	c.15826_15827CC>TT	c.(15826-15828)CCC>TTC	p.P5276F	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5276					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				AGAAACATCGGGCCCTTCGAGC	0.535													20	69					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62288674	62288674	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62288674G>A	uc001ntl.2	-	5	13515	c.13215C>T	c.(13213-13215)GTC>GTT	p.V4405V	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4405					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TGGGCAGAGAGACATCCACAT	0.468													95	225					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62288742	62288742	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62288742G>A	uc001ntl.2	-	5	13447	c.13147C>T	c.(13147-13149)CCC>TCC	p.P4383S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4383					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GAGATTTTGGGGGCCTTGATG	0.483													89	231					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62293078	62293078	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62293078A>G	uc001ntl.2	-	5	9111	c.8811T>C	c.(8809-8811)GTT>GTC	p.V2937V	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2937					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CTTCAATGTTAACATCAGGGC	0.517													117	243					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62298879	62298879	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62298879G>A	uc001ntl.2	-	5	3310	c.3010C>T	c.(3010-3012)CCC>TCC	p.P1004S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1004					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CTAAATTTGGGCATTTTAATC	0.468													57	152					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62299256	62299256	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62299256G>A	uc001ntl.2	-	5	2933	c.2633C>T	c.(2632-2634)CCC>CTC	p.P878L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	878					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TTTCATCTTGGGCATCTTCAG	0.498													136	355					0	0	1	0	0
EML3	256364	broad.mit.edu	37	11	62372641	62372641	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62372641G>A	uc001ntu.1	-	16	2234	c.1926C>T	c.(1924-1926)CTC>CTT	p.L642L	EML3_uc001ntr.1_Silent_p.L614L|EML3_uc001nts.1_Silent_p.L614L|EML3_uc001ntt.1_Silent_p.L526L|EML3_uc010rly.1_Silent_p.L642L	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	642						cytoplasm|microtubule	protein binding			ovary(1)	1						AGTCAGCACAGAGACCAGTCT	0.562													33	61					0	0	1	0	0
EML3	256364	broad.mit.edu	37	11	62373637	62373637	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62373637G>A	uc001ntu.1	-	13	1862	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	EML3_uc001ntr.1_Silent_p.F490F|EML3_uc001nts.1_Silent_p.F490F|EML3_uc001ntt.1_Silent_p.F402F|EML3_uc010rly.1_Silent_p.F518F|EML3_uc009yny.1_Silent_p.F301F	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	518	WD 5.					cytoplasm|microtubule	protein binding			ovary(1)	1						GACACAAGGCGAAGATAGAAC	0.637													31	63					0	0	1	0	0
EML3	256364	broad.mit.edu	37	11	62376529	62376529	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62376529G>A	uc001ntu.1	-	7	1142	c.834C>T	c.(832-834)GCC>GCT	p.A278A	EML3_uc001ntr.1_Silent_p.A250A|EML3_uc001nts.1_Silent_p.A250A|EML3_uc001ntt.1_Silent_p.A162A|EML3_uc010rly.1_Silent_p.A278A|EML3_uc009yny.1_Silent_p.A61A	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	278						cytoplasm|microtubule	protein binding			ovary(1)	1						CCACCACACAGGCGATAAAGT	0.607													70	185					0	0	1	0	0
GANAB	23193	broad.mit.edu	37	11	62398280	62398281	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62398280_62398281GG>AA	uc001nub.2	-	11	1211_1212	c.1178_1179CC>TT	c.(1177-1179)TCC>TTT	p.S393F	GANAB_uc001nua.2_Missense_Mutation_p.S415F|GANAB_uc001nuc.2_Missense_Mutation_p.S296F|GANAB_uc010rma.1_Missense_Mutation_p.S301F|GANAB_uc010rmb.1_Missense_Mutation_p.S279F	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	393					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						GGTAGCCGAGGGAGAAGAGTGG	0.579													7	22					0	0	1	0	0
GANAB	23193	broad.mit.edu	37	11	62398592	62398592	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62398592G>A	uc001nub.2	-	10	1093	c.1060C>T	c.(1060-1062)CGC>TGC	p.R354C	GANAB_uc001nua.2_Missense_Mutation_p.R376C|GANAB_uc001nuc.2_Missense_Mutation_p.R257C|GANAB_uc010rma.1_Missense_Mutation_p.R262C|GANAB_uc010rmb.1_Missense_Mutation_p.R240C	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	354					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						GACATCCAGCGAACATCTGTC	0.537													78	285					0	0	1	0	0
INTS5	80789	broad.mit.edu	37	11	62415387	62415387	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62415387G>A	uc001nud.2	-	2	2218	c.2165C>T	c.(2164-2166)TCT>TTT	p.S722F	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	722					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						AGAAGCCAAAGAAGCTGAAAC	0.537													10	69					0	0	1	0	0
INTS5	80789	broad.mit.edu	37	11	62417456	62417456	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62417456G>A	uc001nud.2	-	2	149	c.96C>T	c.(94-96)TCC>TCT	p.S32S		NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	32					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						TGATTTCCTGGGACAGCTCCT	0.388													15	55					0	0	1	0	0
TTC9C	283237	broad.mit.edu	37	11	62502996	62502996	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62502996C>T	uc001nuy.2	+	2	750	c.381C>T	c.(379-381)GCC>GCT	p.A127A	TTC9C_uc001nux.2_Silent_p.A260A	NM_173810	NP_776171	Q8N5M4	TTC9C_HUMAN	tetratricopeptide repeat domain 9C	127	TPR 3.						binding			ovary(1)|pancreas(1)	2						ATGACCAGGCCCGCCACTACC	0.512													15	23					0	0	1	0	0
STX5	6811	broad.mit.edu	37	11	62574950	62574950	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62574950G>A	uc001nvh.2	-	11	1213	c.1059C>T	c.(1057-1059)TTC>TTT	p.F353F	NXF1_uc001nvf.1_5'Flank|NXF1_uc001nvg.1_5'Flank|NXF1_uc009yog.1_5'Flank|NXF1_uc010rmh.1_5'Flank|STX5_uc010rmi.1_Silent_p.F257F|STX5_uc009yoh.2_RNA|STX5_uc001nvi.2_Silent_p.F299F|STX5_uc010rmj.1_3'UTR|STX5_uc001nvj.2_Silent_p.F168F	NM_003164	NP_003155	Q13190	STX5_HUMAN	syntaxin 5	353	Helical; Anchor for type IV membrane protein; (Potential).				intracellular protein transport|retrograde transport, endosome to Golgi|vesicle targeting	ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|nucleus|SNARE complex	protein N-terminus binding|SNAP receptor activity			ovary(1)|breast(1)	2						TTCAAGCAAGGAAGACCACAA	0.527													5	29					0	0	1	0	0
SLC3A2	6520	broad.mit.edu	37	11	62655996	62655996	+	Missense_Mutation	SNP	C	T	T	rs138529750		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62655996C>T	uc001nwd.2	+	12	1948	c.1724C>T	c.(1723-1725)TCG>TTG	p.S575L	SLC3A2_uc001nwb.2_Missense_Mutation_p.S606L|SLC3A2_uc001nwc.2_Missense_Mutation_p.S576L|SLC3A2_uc001nwe.2_Missense_Mutation_p.S544L|SLC3A2_uc001nwf.2_Missense_Mutation_p.S513L|SLC3A2_uc001nwg.2_Missense_Mutation_p.S474L	NM_002394	NP_002385	P08195	4F2_HUMAN	solute carrier family 3, member 2 isoform c	575	Extracellular (Potential).				blood coagulation|carbohydrate metabolic process|cell growth|cellular nitrogen compound metabolic process|leucine import|leukocyte migration|tryptophan transport	apical plasma membrane|cell surface|integral to membrane|melanosome	calcium:sodium antiporter activity|catalytic activity|cation binding|neutral amino acid transmembrane transporter activity|protein binding				0						GTGGGCCTCTCGGCTGGACTG	0.642													67	153					0	0	1	0	0
CHRM1	1128	broad.mit.edu	37	11	62677322	62677322	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62677322G>A	uc001nwi.2	-	2	1652	c.1251C>T	c.(1249-1251)TGC>TGT	p.C417C		NM_000738	NP_000729	P11229	ACM1_HUMAN	cholinergic receptor, muscarinic 1	417	Helical; Name=7; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell proliferation|nervous system development|positive regulation of cell proliferation|protein modification process	cell junction|integral to plasma membrane|membrane fraction|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity|protein binding				0					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Benztropine(DB00245)|Bethanechol(DB01019)|Biperiden(DB00810)|Buclizine(DB00354)|Carbachol(DB00411)|Carbinoxamine(DB00748)|Cevimeline(DB00185)|Clidinium(DB00771)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Cyclopentolate(DB00979)|Cycrimine(DB00942)|Desipramine(DB01151)|Dicyclomine(DB00804)|Diphenidol(DB01231)|Doxylamine(DB00366)|Ethopropazine(DB00392)|Flavoxate(DB01148)|Glycopyrrolate(DB00986)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methantheline(DB00940)|Methotrimeprazine(DB01403)|Methylscopolamine(DB00462)|Metixene(DB00340)|Metoclopramide(DB01233)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Oxyphenonium(DB00219)|Pilocarpine(DB01085)|Pirenzepine(DB00670)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propantheline(DB00782)|Propiomazine(DB00777)|Quinacrine(DB01103)|Scopolamine(DB00747)|Solifenacin(DB01591)|Succinylcholine(DB00202)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)|Trihexyphenidyl(DB00376)|Trospium(DB00209)	AGAGTGCGTAGCACATGGGGT	0.607													37	146					0	0	1	0	0
CHRM1	1128	broad.mit.edu	37	11	62677518	62677518	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62677518C>T	uc001nwi.2	-	2	1456	c.1055G>A	c.(1054-1056)CGG>CAG	p.R352Q		NM_000738	NP_000729	P11229	ACM1_HUMAN	cholinergic receptor, muscarinic 1	352	Cytoplasmic (Potential).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell proliferation|nervous system development|positive regulation of cell proliferation|protein modification process	cell junction|integral to plasma membrane|membrane fraction|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity|protein binding				0					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Benztropine(DB00245)|Bethanechol(DB01019)|Biperiden(DB00810)|Buclizine(DB00354)|Carbachol(DB00411)|Carbinoxamine(DB00748)|Cevimeline(DB00185)|Clidinium(DB00771)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Cyclopentolate(DB00979)|Cycrimine(DB00942)|Desipramine(DB01151)|Dicyclomine(DB00804)|Diphenidol(DB01231)|Doxylamine(DB00366)|Ethopropazine(DB00392)|Flavoxate(DB01148)|Glycopyrrolate(DB00986)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methantheline(DB00940)|Methotrimeprazine(DB01403)|Methylscopolamine(DB00462)|Metixene(DB00340)|Metoclopramide(DB01233)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Oxyphenonium(DB00219)|Pilocarpine(DB01085)|Pirenzepine(DB00670)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propantheline(DB00782)|Propiomazine(DB00777)|Quinacrine(DB01103)|Scopolamine(DB00747)|Solifenacin(DB01591)|Succinylcholine(DB00202)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)|Trihexyphenidyl(DB00376)|Trospium(DB00209)	GAAGGTCTTCCGCTTGGCCAG	0.597													11	30					0	0	1	0	0
CHRM1	1128	broad.mit.edu	37	11	62677545	62677545	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62677545G>A	uc001nwi.2	-	2	1429	c.1028C>T	c.(1027-1029)CCC>CTC	p.P343L		NM_000738	NP_000729	P11229	ACM1_HUMAN	cholinergic receptor, muscarinic 1	343	Cytoplasmic (Potential).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell proliferation|nervous system development|positive regulation of cell proliferation|protein modification process	cell junction|integral to plasma membrane|membrane fraction|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity|protein binding				0					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Benztropine(DB00245)|Bethanechol(DB01019)|Biperiden(DB00810)|Buclizine(DB00354)|Carbachol(DB00411)|Carbinoxamine(DB00748)|Cevimeline(DB00185)|Clidinium(DB00771)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Cyclopentolate(DB00979)|Cycrimine(DB00942)|Desipramine(DB01151)|Dicyclomine(DB00804)|Diphenidol(DB01231)|Doxylamine(DB00366)|Ethopropazine(DB00392)|Flavoxate(DB01148)|Glycopyrrolate(DB00986)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methantheline(DB00940)|Methotrimeprazine(DB01403)|Methylscopolamine(DB00462)|Metixene(DB00340)|Metoclopramide(DB01233)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Oxyphenonium(DB00219)|Pilocarpine(DB01085)|Pirenzepine(DB00670)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propantheline(DB00782)|Propiomazine(DB00777)|Quinacrine(DB01103)|Scopolamine(DB00747)|Solifenacin(DB01591)|Succinylcholine(DB00202)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)|Trihexyphenidyl(DB00376)|Trospium(DB00209)	CTTTCCACGGGGCTTCTGGCC	0.627													14	41					0	0	1	0	0
SLC22A6	9356	broad.mit.edu	37	11	62744636	62744636	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62744636C>T	uc001nwk.2	-	9	1892	c.1585G>A	c.(1585-1587)GAA>AAA	p.E529K	SLC22A6_uc001nwl.2_Intron|SLC22A6_uc001nwj.2_Intron|SLC22A6_uc001nwm.2_Missense_Mutation_p.E485K	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	529	Cytoplasmic (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						atccctgcttctttctgagTG	0.323													19	173					0	0	1	0	0
SLC22A6	9356	broad.mit.edu	37	11	62748477	62748477	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62748477G>A	uc001nwk.2	-	6	1324	c.1017C>T	c.(1015-1017)TTC>TTT	p.F339F	SLC22A6_uc001nwl.2_Silent_p.F339F|SLC22A6_uc001nwj.2_Silent_p.F339F|SLC22A6_uc001nwm.2_Silent_p.F339F	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	339	Helical; (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						AGAGGCAGAGGAAGAGGTGGC	0.617													21	50					0	0	1	0	0
SLC22A6	9356	broad.mit.edu	37	11	62751905	62751905	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62751905C>T	uc001nwk.2	-	1	565	c.258G>A	c.(256-258)TGG>TGA	p.W86*	SLC22A6_uc001nwl.2_Nonsense_Mutation_p.W86*|SLC22A6_uc001nwj.2_Nonsense_Mutation_p.W86*|SLC22A6_uc001nwm.2_Nonsense_Mutation_p.W86*	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	86	Extracellular (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						AGGGCAGTCCCCACTGCGGGG	0.637													21	123					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62760970	62760970	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62760970C>T	uc001nwo.2	-	10	1591	c.1455G>A	c.(1453-1455)GGG>GGA	p.G485G	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_Silent_p.G485G|SLC22A8_uc009yom.2_Silent_p.G362G|SLC22A8_uc010rmm.1_Silent_p.G394G|SLC22A8_uc009yon.2_Silent_p.G485G	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	485	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						CAGCACTGCCCCCGAGGAGGG	0.597													15	120					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62763514	62763514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62763514C>T	uc001nwo.2	-	6	1008	c.872G>A	c.(871-873)AGG>AAG	p.R291K	SLC22A8_uc001nwn.1_Missense_Mutation_p.R82K|SLC22A8_uc001nwp.2_Missense_Mutation_p.R291K|SLC22A8_uc009yom.2_Missense_Mutation_p.R168K|SLC22A8_uc010rmm.1_Missense_Mutation_p.R200K|SLC22A8_uc009yon.2_Missense_Mutation_p.R291K	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	291	Cytoplasmic (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						CAAGCTGAGCCTTTCTCCCTC	0.587													10	127					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62763577	62763577	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62763577G>A	uc001nwo.2	-	6	945	c.809C>T	c.(808-810)TCG>TTG	p.S270L	SLC22A8_uc001nwn.1_Missense_Mutation_p.S61L|SLC22A8_uc001nwp.2_Missense_Mutation_p.S270L|SLC22A8_uc009yom.2_Missense_Mutation_p.S147L|SLC22A8_uc010rmm.1_Missense_Mutation_p.S179L|SLC22A8_uc009yon.2_Missense_Mutation_p.S270L	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	270	Cytoplasmic (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						CAGGGCCTTCGAGGACTTTCC	0.577													31	84					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62768205	62768205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62768205C>T	uc001nwo.2	-	3	560	c.424G>A	c.(424-426)GAC>AAC	p.D142N	SLC22A8_uc001nwn.1_5'Flank|SLC22A8_uc001nwp.2_Missense_Mutation_p.D142N|SLC22A8_uc009yom.2_Missense_Mutation_p.D19N|SLC22A8_uc010rmm.1_Missense_Mutation_p.D51N|SLC22A8_uc009yon.2_Missense_Mutation_p.D142N	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	142	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						TCAGACAGGTCTCCAAGCACG	0.562													17	45					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62782276	62782276	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62782276G>A	uc001nwo.2	-	2	291	c.155C>T	c.(154-156)CCC>CTC	p.P52L	SLC22A8_uc001nwp.2_Missense_Mutation_p.P52L|SLC22A8_uc009yom.2_Intron|SLC22A8_uc010rmm.1_Intron|SLC22A8_uc009yon.2_Missense_Mutation_p.P52L	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	52	Extracellular (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						GGCATTGTGGGGCGGGCGACA	0.627													97	161					0	0	1	0	0
SLC22A25	387601	broad.mit.edu	37	11	62933664	62933664	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62933664G>A	uc001nwr.1	-	7	1137	c.1137C>T	c.(1135-1137)TTC>TTT	p.F379F	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_3'UTR	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	379	Helical; Name=8; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						TCTGCAACAGGAAAACATTGT	0.478													25	64					0	0	1	0	0
SLC22A25	387601	broad.mit.edu	37	11	62995958	62995958	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62995958T>G	uc001nwr.1	-	2	481	c.481A>C	c.(481-483)AAC>CAC	p.N161H	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_Intron|SLC22A25_uc001nwt.1_Missense_Mutation_p.N161H	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	161	Helical; Name=2; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CCATATAGGTTGCCTCCCACC	0.408													25	66					0	0	1	0	0
SLC22A25	387601	broad.mit.edu	37	11	62995971	62995971	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62995971C>T	uc001nwr.1	-	2	468	c.468G>A	c.(466-468)ATG>ATA	p.M156I	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_Intron|SLC22A25_uc001nwt.1_Missense_Mutation_p.M156I	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	156	Helical; Name=2; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CTCCCACCATCATTCCAGCCA	0.408													17	84					0	0	1	0	0
SLC22A25	387601	broad.mit.edu	37	11	62996844	62996844	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:62996844G>A	uc001nwr.1	-	1	281	c.281C>T	c.(280-282)CCC>CTC	p.P94L	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.P94L	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	94	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CTTCCACTGGGGATGGACAAA	0.542													15	82					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63057714	63057714	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63057714C>T	uc009yor.2	+	1	285	c.77C>T	c.(76-78)CCC>CTC	p.P26L	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_Intron|SLC22A10_uc010rmp.1_5'Flank	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	26	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						TTTATTCTTCCCTCTCTCATG	0.458													26	49					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63057770	63057770	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63057770C>T	uc009yor.2	+	1	341	c.133C>T	c.(133-135)CCT>TCT	p.P45S	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_5'UTR	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	45	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						TGCAGCCATTCCTGGTCATCG	0.443													39	81					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63057917	63057917	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63057917C>T	uc009yor.2	+	1	488	c.280C>T	c.(280-282)CCC>TCC	p.P94S	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Missense_Mutation_p.P42S	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	94	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CTTTGTCCATCCCCAGTGGCA	0.488													57	112					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63059013	63059013	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63059013G>A	uc009yor.2	+	2	612	c.404G>A	c.(403-405)TGG>TAG	p.W135*	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Nonsense_Mutation_p.W83*	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	135	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CTCTTCCAGTGGGACCTGGTA	0.468													16	44					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63059015	63059015	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63059015G>A	uc009yor.2	+	2	614	c.406G>A	c.(406-408)GAC>AAC	p.D136N	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Missense_Mutation_p.D84N	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	136	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CTTCCAGTGGGACCTGGTATG	0.463													16	45					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63064844	63064844	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63064844C>T	uc009yor.2	+	3	784	c.576C>T	c.(574-576)TTC>TTT	p.F192F	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	192	Cytoplasmic (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GCGCTGCCTTCGCTCCCACCT	0.428													33	136					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63129901	63129901	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63129901G>A	uc010rmo.1	+	9		c.1023G>A						Q63ZE4	S22AA_HUMAN	Homo sapiens mRNA for putative protein product of HMFN2567, complete cds.							integral to membrane	transmembrane transporter activity			ovary(2)	2						CAAACCAGAGGAGGGCTTAAA	0.458													12	25					0	0	1	0	0
SLC22A9	114571	broad.mit.edu	37	11	63137657	63137657	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63137657C>T	uc001nww.2	+	1	397	c.129C>T	c.(127-129)TTC>TTT	p.F43F	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	43	Extracellular (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						TCACTGCATTCATACCTGGCC	0.483													80	175					0	0	1	0	0
SLC22A9	114571	broad.mit.edu	37	11	63141473	63141473	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63141473G>A	uc001nww.2	+	4	1037	c.769G>A	c.(769-771)GAC>AAC	p.D257N	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	257	Extracellular (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						TGCCATTCGAGACTGGCATAT	0.458													8	39					0	0	1	0	0
SLC22A9	114571	broad.mit.edu	37	11	63141520	63141520	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63141520C>T	uc001nww.2	+	4	1084	c.816C>T	c.(814-816)ATC>ATT	p.I272I	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	272	Helical; (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						ACTTTGTGATCTTTCTGACCT	0.428													9	30					0	0	1	0	0
SLC22A9	114571	broad.mit.edu	37	11	63149660	63149660	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63149660G>A	uc001nww.2	+	6	1252	c.984G>A	c.(982-984)CTG>CTA	p.L328L	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	328	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						AAAAAGAACTGGAGGCAGCAC	0.408													64	131					0	0	1	0	0
SLC22A9	114571	broad.mit.edu	37	11	63149732	63149733	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63149732_63149733CC>TT	uc001nww.2	+	6	1324_1325	c.1056_1057CC>TT	c.(1054-1059)TCCCTC>TCTTTC	p.L353F	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	353	Helical; (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						AAAGGATCTCCCTCCTGTCCTT	0.401													42	108					0	0	1	0	0
SLC22A9	114571	broad.mit.edu	37	11	63174098	63174098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63174098G>A	uc001nww.2	+	7	1471	c.1203G>A	c.(1201-1203)CTG>CTA	p.L401L	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	401	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						CTTGGGCACTGAAATACATGA	0.483													10	100					0	0	1	0	0
HRASLS5	117245	broad.mit.edu	37	11	63235883	63235883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63235883C>T	uc001nwy.2	-	4	604	c.430G>A	c.(430-432)GAG>AAG	p.E144K	HRASLS5_uc001nwz.2_Missense_Mutation_p.E134K|HRASLS5_uc010rmq.1_Missense_Mutation_p.E144K|HRASLS5_uc009yos.2_Intron	NM_054108	NP_473449	Q96KN8	HRSL5_HUMAN	HRAS-like suppressor family, member 5 isoform 1	144										ovary(1)	1						GCCCAGTGCTCATAGCCAATT	0.408													44	111					0	0	1	0	0
LGALS12	85329	broad.mit.edu	37	11	63276393	63276393	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63276393G>A	uc001nxa.2	+	3	709	c.368G>A	c.(367-369)TGG>TAG	p.W123*	LGALS12_uc001nxb.2_Nonsense_Mutation_p.W123*|LGALS12_uc001nxc.2_Nonsense_Mutation_p.W124*|LGALS12_uc001nxd.2_Nonsense_Mutation_p.W62*|LGALS12_uc001nxe.2_Nonsense_Mutation_p.W62*|LGALS12_uc009yot.2_Nonsense_Mutation_p.W83*	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	123	Galectin 1.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						GAGGCCCGGTGGCCCCACCTG	0.592													18	73					0	0	1	0	0
LGALS12	85329	broad.mit.edu	37	11	63276414	63276414	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63276414G>A	uc001nxa.2	+	3	730	c.389G>A	c.(388-390)AGA>AAA	p.R130K	LGALS12_uc001nxb.2_Missense_Mutation_p.R130K|LGALS12_uc001nxc.2_Missense_Mutation_p.R131K|LGALS12_uc001nxd.2_Missense_Mutation_p.R69K|LGALS12_uc001nxe.2_Missense_Mutation_p.R69K|LGALS12_uc009yot.2_Missense_Mutation_p.R90K	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	130	Galectin 1.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						GCCCTGCGAAGAGGCTCCAGC	0.592													18	54					0	0	1	0	0
LGALS12	85329	broad.mit.edu	37	11	63277357	63277357	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63277357C>T	uc001nxa.2	+	4	887	c.546C>T	c.(544-546)TTC>TTT	p.F182F	LGALS12_uc001nxb.2_Silent_p.F182F|LGALS12_uc001nxc.2_Silent_p.F183F|LGALS12_uc001nxd.2_Silent_p.F121F|LGALS12_uc001nxe.2_Silent_p.F121F|LGALS12_uc009yot.2_Silent_p.F142F	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	182	Galectin 1.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						CTGTTGGATTCCTGAACATCA	0.557													5	24					0	0	1	0	0
RARRES3	5920	broad.mit.edu	37	11	63313703	63313703	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63313703G>A	uc001nxf.3	+	4	538	c.470G>A	c.(469-471)AGA>AAA	p.R157K		NM_004585	NP_004576	Q9UL19	TIG3_HUMAN	retinoic acid receptor responder (tazarotene	157					lipid catabolic process|negative regulation of cell proliferation		hydrolase activity			ovary(1)	1						GCGATTAGGAGATACCAAAAA	0.532													59	152					0	0	1	0	0
RARRES3	5920	broad.mit.edu	37	11	63313725	63313725	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63313725C>T	uc001nxf.3	+	4	560	c.492C>T	c.(490-492)GCC>GCT	p.A164A		NM_004585	NP_004576	Q9UL19	TIG3_HUMAN	retinoic acid receptor responder (tazarotene	164					lipid catabolic process|negative regulation of cell proliferation		hydrolase activity			ovary(1)	1						AAGCGACAGCCTGAAGCAGCC	0.547													44	100					0	0	1	0	0
HRASLS2	54979	broad.mit.edu	37	11	63320447	63320447	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63320447C>T	uc001nxg.1	-	4	537	c.478G>A	c.(478-480)GAA>AAA	p.E160K		NM_017878	NP_060348	Q9NWW9	HRSL2_HUMAN	HRAS-like suppressor 2	160					lipid catabolic process	cytoplasm	acyltransferase activity|hydrolase activity				0						TATTGCCTTTCCCGCTTGCTT	0.512													14	57					0	0	1	0	0
HRASLS2	54979	broad.mit.edu	37	11	63325900	63325900	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63325900C>T	uc001nxg.1	-	3	410	c.351G>A	c.(349-351)GTG>GTA	p.V117V		NM_017878	NP_060348	Q9NWW9	HRSL2_HUMAN	HRAS-like suppressor 2	117					lipid catabolic process	cytoplasm	acyltransferase activity|hydrolase activity				0						GCAGATGGTTCACGAAGTGCT	0.597													23	61					0	0	1	0	0
RTN3	10313	broad.mit.edu	37	11	63487353	63487353	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63487353C>T	uc001nxq.2	+	3	1566	c.1379C>T	c.(1378-1380)TCT>TTT	p.S460F	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Missense_Mutation_p.S441F|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Missense_Mutation_p.S348F|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	460					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						AAATGTGACTCTTTGGGTTCT	0.448													37	89					0	0	1	0	0
RTN3	10313	broad.mit.edu	37	11	63517538	63517538	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63517538C>T	uc001nxq.2	+	4	2793	c.2606C>T	c.(2605-2607)TCC>TTC	p.S869F	RTN3_uc001nxo.2_Missense_Mutation_p.S73F|RTN3_uc001nxm.2_Missense_Mutation_p.S92F|RTN3_uc001nxn.2_Missense_Mutation_p.S850F|RTN3_uc001nxp.2_Missense_Mutation_p.S73F|RTN3_uc009yov.2_Missense_Mutation_p.S757F|RTN3_uc010rmt.1_RNA|RTN3_uc010rmu.1_Missense_Mutation_p.S73F	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	869	Helical; (Potential).|Reticulon.				apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						ATGCTGCTTTCCCTGGCAGCT	0.468													12	42					0	0	1	0	0
RTN3	10313	broad.mit.edu	37	11	63517664	63517664	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63517664C>T	uc001nxq.2	+	4	2919	c.2732C>T	c.(2731-2733)CCA>CTA	p.P911L	RTN3_uc001nxo.2_Missense_Mutation_p.P115L|RTN3_uc001nxm.2_Missense_Mutation_p.P134L|RTN3_uc001nxn.2_Missense_Mutation_p.P892L|RTN3_uc001nxp.2_Missense_Mutation_p.P115L|RTN3_uc009yov.2_Missense_Mutation_p.P799L|RTN3_uc010rmt.1_RNA|RTN3_uc010rmu.1_Missense_Mutation_p.P115L	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	911	Reticulon.				apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						GAAGGCCATCCATTCAAGTGA	0.428													7	17					0	0	1	0	0
MARK2	2011	broad.mit.edu	37	11	63668267	63668267	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63668267C>T	uc001nxw.2	+	10	1483	c.904C>T	c.(904-906)CGA>TGA	p.R302*	MARK2_uc001nxx.2_Nonsense_Mutation_p.R302*|MARK2_uc001nxy.2_Nonsense_Mutation_p.R302*|MARK2_uc001nxv.3_Nonsense_Mutation_p.R302*|MARK2_uc001nxz.3_Nonsense_Mutation_p.R269*|MARK2_uc009yoy.2_Nonsense_Mutation_p.R269*	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	302	Protein kinase.				cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						CATGAAAGATCGATGGATGAA	0.562													24	275					0	0	1	0	0
MARK2	2011	broad.mit.edu	37	11	63676695	63676695	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63676695G>A	uc001nxw.2	+	19	2932	c.2353G>A	c.(2353-2355)GAG>AAG	p.E785K	MARK2_uc001nxx.2_Missense_Mutation_p.E716K|MARK2_uc001nxy.2_Missense_Mutation_p.E706K|MARK2_uc001nxv.3_Missense_Mutation_p.E721K|MARK2_uc001nxz.3_Missense_Mutation_p.E742K|MARK2_uc009yoy.2_Missense_Mutation_p.E696K	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	785	KA1.				cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						AATAGCCAACGAGCTGAAGCT	0.537													21	56					0	0	1	0	0
FLRT1	23769	broad.mit.edu	37	11	63883877	63883878	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63883877_63883878GG>AA	uc001nyi.1	+	2	479_480	c.138_139GG>AA	c.(136-141)ACGGAG>ACAAAG	p.E47K	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	19					cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						CCTTCCTGACGGAGGTCATCGA	0.48													11	35					0	0	1	0	0
FLRT1	23769	broad.mit.edu	37	11	63883944	63883944	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63883944G>A	uc001nyi.1	+	2	546	c.205G>A	c.(205-207)GAC>AAC	p.D69N	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	41	Extracellular (Potential).|LRRNT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						CTACTGCAACGACCGGGGACT	0.607													23	44					0	0	1	0	0
FLRT1	23769	broad.mit.edu	37	11	63885483	63885483	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:63885483G>A	uc001nyi.1	+	2	2085	c.1744G>A	c.(1744-1746)GAG>AAG	p.E582K	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	554	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						CCAGGCTGGCGAGCTGCTGAC	0.627													4	52					0	0	1	0	0
FKBP2	2286	broad.mit.edu	37	11	64010707	64010707	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64010707C>T	uc001nyy.2	+	3	404	c.208C>T	c.(208-210)CTG>TTG	p.L70L	FKBP2_uc010rnh.1_Silent_p.L70L|FKBP2_uc001nyz.2_Silent_p.L70L	NM_004470	NP_004461	P26885	FKBP2_HUMAN	FK506 binding protein 2, 13kDa precursor	70	PPIase FKBP-type.				protein folding	endoplasmic reticulum membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding				0						TGACAGCAGCCTGCCCCAGAA	0.617													7	56					0	0	1	0	0
PLCB3	5331	broad.mit.edu	37	11	64026164	64026164	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64026164C>T	uc001nzb.2	+	11	1232	c.1232C>T	c.(1231-1233)TCC>TTC	p.S411F	PLCB3_uc009ypg.1_Missense_Mutation_p.S411F|PLCB3_uc009yph.1_Missense_Mutation_p.S344F|PLCB3_uc009ypi.2_Missense_Mutation_p.S411F	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	411	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						GTCATCCTCTCCTTCGAGAAC	0.612													32	53					0	0	1	0	0
GPR137	56834	broad.mit.edu	37	11	64055334	64055334	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64055334C>T	uc001nzg.1	+	4	857	c.549C>T	c.(547-549)TTC>TTT	p.F183F	GPR137_uc009ypj.1_Silent_p.F189F|GPR137_uc010rni.1_Silent_p.F241F|GPR137_uc001nze.1_Silent_p.F183F|GPR137_uc001nzf.2_Silent_p.F183F|GPR137_uc001nzh.1_Silent_p.F183F|GPR137_uc001nzi.2_Silent_p.F183F|GPR137_uc010rnj.1_Silent_p.F183F	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	183	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						ACTCCCTGTTCGTCATCTGCG	0.662													21	49					0	0	1	0	0
GPR137	56834	broad.mit.edu	37	11	64056670	64056670	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64056670C>T	uc001nzg.1	+	8	1395	c.1087C>T	c.(1087-1089)CCC>TCC	p.P363S	GPR137_uc010rni.1_Missense_Mutation_p.P421S|GPR137_uc001nzf.2_3'UTR|GPR137_uc001nzi.2_3'UTR|GPR137_uc010rnj.1_3'UTR|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank|KCNK4_uc001nzl.1_5'Flank|KCNK4_uc001nzm.3_5'Flank|KCNK4_uc001nzn.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	363	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						CAGACGTGATCCCCCTCCCTC	0.647													30	76					0	0	1	0	0
GPR137	56834	broad.mit.edu	37	11	64056769	64056769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64056769C>T	uc001nzg.1	+	8	1494	c.1186C>T	c.(1186-1188)CGT>TGT	p.R396C	GPR137_uc010rni.1_Missense_Mutation_p.R454C|GPR137_uc001nzf.2_3'UTR|GPR137_uc001nzi.2_3'UTR|GPR137_uc010rnj.1_3'UTR|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank|KCNK4_uc001nzl.1_5'Flank|KCNK4_uc001nzm.3_5'Flank|KCNK4_uc001nzn.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	396	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						TCCTGGGGGTCGTGGCTACCC	0.667													64	149					0	0	1	0	0
ESRRA	2101	broad.mit.edu	37	11	64074765	64074765	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64074765C>T	uc001nzq.1	+	2	291	c.114C>T	c.(112-114)GCC>GCT	p.A38A	ESRRA_uc001nzr.1_Silent_p.A38A|ESRRA_uc001nzs.1_Silent_p.A38A	NM_004451	NP_004442	P11474	ERR1_HUMAN	estrogen-related receptor alpha	38	Repressor domain.				positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein domain specific binding|sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0						TGGCCCTGGCCCCTGGTCCAG	0.667													14	30					0	0	1	0	0
CCDC88B	283234	broad.mit.edu	37	11	64111644	64111644	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64111644C>T	uc001nzy.2	+	14	1675	c.1631C>T	c.(1630-1632)TCA>TTA	p.S544L	CCDC88B_uc009ypo.1_Missense_Mutation_p.S541L|CCDC88B_uc001nzz.1_Missense_Mutation_p.S193L	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	544					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						CTCGAGGCATCAGCTGAGTGT	0.632													42	101					0	0	1	0	0
CCDC88B	283234	broad.mit.edu	37	11	64111715	64111715	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64111715G>A	uc001nzy.2	+	14	1746	c.1702G>A	c.(1702-1704)GAC>AAC	p.D568N	CCDC88B_uc009ypo.1_Missense_Mutation_p.D565N|CCDC88B_uc001nzz.1_Missense_Mutation_p.D217N	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	568					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						AGCTGCCATGGACCCCCAGGC	0.632													41	67					0	0	1	0	0
CCDC88B	283234	broad.mit.edu	37	11	64116835	64116835	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64116835G>A	uc001nzy.2	+	15	2693	c.2649G>A	c.(2647-2649)GAG>GAA	p.E883E	CCDC88B_uc009ypo.1_Silent_p.E880E|CCDC88B_uc001nzz.1_Silent_p.E532E|CCDC88B_uc001oaa.2_Silent_p.E35E	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	883	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GGGGCAAGGAGTTGGGGGACC	0.502													7	16					0	0	1	0	0
CCDC88B	283234	broad.mit.edu	37	11	64117071	64117071	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64117071G>A	uc001nzy.2	+	16	2837	c.2793G>A	c.(2791-2793)GCG>GCA	p.A931A	CCDC88B_uc009ypo.1_Silent_p.A928A|CCDC88B_uc001nzz.1_Silent_p.A580A|CCDC88B_uc001oaa.2_Silent_p.A83A	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	931	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						AGGCGGCGGCGACCAGCAAGG	0.557													4	13					0	0	1	0	0
SLC22A11	55867	broad.mit.edu	37	11	64331852	64331852	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64331852G>A	uc001oai.2	+	5	1268	c.894G>A	c.(892-894)AAG>AAA	p.K298K	SLC22A11_uc001oah.1_Intron|SLC22A11_uc001oaj.2_Silent_p.K298K|SLC22A11_uc009ypq.2_Silent_p.K298K|SLC22A11_uc001oak.1_Silent_p.K127K	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	298	Cytoplasmic (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	AGCTCAGAAAGGTGGCCAGGA	0.562													20	49					0	0	1	0	0
SLC22A11	55867	broad.mit.edu	37	11	64335111	64335111	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64335111C>T	uc001oai.2	+	7	1473	c.1099C>T	c.(1099-1101)CTG>TTG	p.L367L	SLC22A11_uc001oaj.2_Silent_p.L367L|SLC22A11_uc009ypq.2_Intron	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	367	Helical; (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	GGTCTTCGACCTGCAGAGCCT	0.632													62	133					0	0	1	0	0
SLC22A12	116085	broad.mit.edu	37	11	64368270	64368270	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64368270C>T	uc001oam.1	+	9	2205	c.1458C>T	c.(1456-1458)GTC>GTT	p.V486V	SLC22A12_uc001oal.1_Silent_p.V265V|SLC22A12_uc009yps.1_Silent_p.V452V|SLC22A12_uc001oan.1_Silent_p.V378V|SLC22A12_uc009ypt.2_Silent_p.V304V	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	486	Helical; (Potential).				cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						GGCCTCTGGTCCGGCTGCTGG	0.657													24	60					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64390363	64390363	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64390363G>A	uc001oap.2	-	6	1408	c.897C>T	c.(895-897)TCC>TCT	p.S299S	NRXN2_uc001oar.2_Silent_p.S1345S|NRXN2_uc001oas.2_Silent_p.S1275S|NRXN2_uc001oao.2_5'UTR|NRXN2_uc001oaq.2_Silent_p.S1012S	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	299	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						TGAGCAGCACGGACGGCCCCT	0.537													10	16					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64397937	64397937	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64397937G>A	uc001oap.2	-	4	1067	c.556C>T	c.(556-558)CGA>TGA	p.R186*	NRXN2_uc001oar.2_Nonsense_Mutation_p.R1232*|NRXN2_uc001oas.2_Nonsense_Mutation_p.R1192*|NRXN2_uc001oaq.2_Nonsense_Mutation_p.R899*	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	186	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CCGCCGCTTCGAGTGAAGCGC	0.517													27	84					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64417930	64417930	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64417930G>A	uc001oar.2	-	16	3538	c.3099C>T	c.(3097-3099)CTC>CTT	p.L1033L	NRXN2_uc001oas.2_Silent_p.L993L|NRXN2_uc001oaq.2_Silent_p.L700L	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CTTTGAGATCGAGGTTTCGGG	0.632													36	137					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64418966	64418966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64418966C>T	uc001oar.2	-	15	3118	c.2679G>A	c.(2677-2679)ATG>ATA	p.M893I	NRXN2_uc001oas.2_Missense_Mutation_p.M853I|NRXN2_uc001oaq.2_Missense_Mutation_p.M560I	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						TGCACTGGTCCATGTAGGGCT	0.582											OREG0021057	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	37					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64427844	64427844	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64427844C>T	uc001oar.2	-	12	2788	c.2349G>A	c.(2347-2349)CTG>CTA	p.L783L	NRXN2_uc001oas.2_Silent_p.L752L|NRXN2_uc001oaq.2_Silent_p.L450L	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	147	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CATCCAGCTCCAGGCGTAGGG	0.617													9	72					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64428396	64428396	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64428396C>T	uc001oar.2	-	11	2453	c.2014G>A	c.(2014-2016)GGC>AGC	p.G672S	NRXN2_uc001oas.2_Missense_Mutation_p.G641S|NRXN2_uc001oaq.2_Missense_Mutation_p.G339S	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						TCAGCCAGGCCCCGGAGGTCT	0.682													23	33					0	0	1	0	0
RASGRP2	10235	broad.mit.edu	37	11	64504407	64504407	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64504407C>T	uc009ypu.2	-	9	1140	c.913G>A	c.(913-915)GGT>AGT	p.G305S	RASGRP2_uc001oat.2_Missense_Mutation_p.G207S|RASGRP2_uc001oau.2_Missense_Mutation_p.G160S|RASGRP2_uc009ypv.2_Missense_Mutation_p.G305S|RASGRP2_uc009ypw.2_Missense_Mutation_p.G305S	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	305	Ras-GEF.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						AGGTGCACACCCAGGATCGGG	0.652													13	34					0	0	1	0	0
RASGRP2	10235	broad.mit.edu	37	11	64507629	64507629	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64507629G>A	uc009ypu.2	-	6	605	c.378C>T	c.(376-378)ACC>ACT	p.T126T	RASGRP2_uc001oat.2_Silent_p.T28T|RASGRP2_uc001oau.2_5'UTR|RASGRP2_uc009ypv.2_Silent_p.T126T|RASGRP2_uc009ypw.2_Silent_p.T126T	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	126	N-terminal Ras-GEF.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						TCCACTTGTAGGTAGGGCTGG	0.577													25	67					0	0	1	0	0
PYGM	5837	broad.mit.edu	37	11	64514191	64514191	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64514191C>T	uc001oax.3	-	20	3286	c.2469G>A	c.(2467-2469)CGG>CGA	p.R823R	RASGRP2_uc009ypu.2_5'Flank|RASGRP2_uc009ypv.2_5'Flank|RASGRP2_uc009ypw.2_5'Flank|RASGRP2_uc001oaw.1_5'Flank|PYGM_uc001oay.3_Silent_p.R735R	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	823					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	CCCAGATCTCCCGGGCATACT	0.617													20	63					0	0	1	0	0
PYGM	5837	broad.mit.edu	37	11	64517912	64517912	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64517912C>T	uc001oax.3	-	17	2930	c.2113G>A	c.(2113-2115)GGA>AGA	p.G705R	PYGM_uc001oay.3_Missense_Mutation_p.G617R	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	705					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	TTTTCCTCTCCCGCCTCTTCT	0.557													16	231					0	0	1	0	0
SF1	7536	broad.mit.edu	37	11	64535070	64535070	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64535070G>A	uc001obb.1	-	10	1692	c.1315C>T	c.(1315-1317)CCT>TCT	p.P439S	SF1_uc010rnm.1_Missense_Mutation_p.P131S|SF1_uc010rnn.1_Missense_Mutation_p.P413S|SF1_uc001oaz.1_Missense_Mutation_p.P564S|SF1_uc001oba.1_Missense_Mutation_p.P439S|SF1_uc001obc.1_Missense_Mutation_p.P439S|SF1_uc001obd.1_Missense_Mutation_p.P439S|SF1_uc001obe.1_Missense_Mutation_p.P324S|SF1_uc010rno.1_Missense_Mutation_p.P324S	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	439	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						TGGTGCCCAGGAGGGTGGGGG	0.607											OREG0021062	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	100					0	0	1	0	0
SF1	7536	broad.mit.edu	37	11	64535205	64535205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64535205G>A	uc001obb.1	-	10	1557	c.1180C>T	c.(1180-1182)CCC>TCC	p.P394S	SF1_uc010rnm.1_Missense_Mutation_p.P86S|SF1_uc010rnn.1_Missense_Mutation_p.P368S|SF1_uc001oaz.1_Missense_Mutation_p.P519S|SF1_uc001oba.1_Missense_Mutation_p.P394S|SF1_uc001obc.1_Missense_Mutation_p.P394S|SF1_uc001obd.1_Missense_Mutation_p.P394S|SF1_uc001obe.1_Missense_Mutation_p.P279S|SF1_uc010rno.1_Missense_Mutation_p.P279S	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	394	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						AAGCTGTGGGGGCCACCTCCG	0.647											OREG0004010|OREG0021062	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)|type=REGULATORY REGION|Gene=LOC476031|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	24	39					0	0	1	0	0
MAP4K2	5871	broad.mit.edu	37	11	64570110	64570110	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64570110G>A	uc001obh.2	-	3	262	c.170C>T	c.(169-171)TCC>TTC	p.S57F	MAP4K2_uc001obi.2_Missense_Mutation_p.S57F|MAP4K2_uc010rnp.1_Missense_Mutation_p.S57F	NM_004579	NP_004570	Q12851	M4K2_HUMAN	mitogen-activated protein kinase kinase kinase	57	Protein kinase.				activation of JUN kinase activity|immune response|positive regulation of JNK cascade|vesicle targeting	basolateral plasma membrane|Golgi membrane|soluble fraction	ATP binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(1)|pancreas(1)	2						CTGCTGGAGGGAGCTGATGTC	0.498													4	28					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64591999	64591999	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64591999G>A	uc001obs.3	-	37	4602	c.4602C>T	c.(4600-4602)GTC>GTT	p.V1534V		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1534					actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						GCCGTTCTGAGACCTGCAGGA	0.577													9	56					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64594170	64594170	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64594170C>T	uc001obs.3	-	35	4486	c.4486G>A	c.(4486-4488)GAA>AAA	p.E1496K		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1496					actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						CCGAGGCCTTCGCTGCCCATG	0.677													4	2					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64594815	64594815	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64594815G>A	uc001obs.3	-	33	4206	c.4206C>T	c.(4204-4206)TTC>TTT	p.F1402F		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1402					actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						TCTTGGTGCGGAACAGCTGGC	0.652													27	121					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64603064	64603064	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64603064C>T	uc001obs.3	-	15	1788	c.1788G>A	c.(1786-1788)GGG>GGA	p.G596G		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	596	Potential.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						GGGGTCCCATCCCGTTGGTCT	0.667													20	94					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64607671	64607671	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64607671G>A	uc001obs.3	-	5	502	c.502C>T	c.(502-504)CCG>TCG	p.P168S		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	168	Protein kinase.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						AGCTCGGGCGGGAGACGGTCC	0.642													15	38					0	0	1	0	0
EHD1	10938	broad.mit.edu	37	11	64622825	64622825	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64622825G>A	uc001obu.1	-	4	1304	c.1049C>T	c.(1048-1050)CCT>CTT	p.P350L	EHD1_uc001obt.1_Missense_Mutation_p.P33L|EHD1_uc001obv.1_Missense_Mutation_p.P350L|EHD1_uc010rnq.1_Missense_Mutation_p.P364L	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	350					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						GAAGTCCCCAGGGGAGATCTG	0.582											OREG0004024	type=REGULATORY REGION|Gene=EHD1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	25	59					0	0	1	0	0
EHD1	10938	broad.mit.edu	37	11	64627777	64627777	+	Silent	SNP	G	A	A	rs148805183		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64627777G>A	uc001obu.1	-	3	789	c.534C>T	c.(532-534)TTC>TTT	p.F178F	EHD1_uc001obv.1_Silent_p.F178F|EHD1_uc010rnq.1_Silent_p.F192F	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	178					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						CACGCTCCGCGAACCACTCCA	0.587													19	34					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64662882	64662882	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64662882G>A	uc001obx.2	-	40	5575	c.5460C>T	c.(5458-5460)TCC>TCT	p.S1820S	uc009ypx.2_5'Flank|ATG2A_uc001obw.2_Silent_p.S585S	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1820							protein binding			ovary(1)|central_nervous_system(1)	2						GGGCTGCCGGGGACAGGATGT	0.701													5	10					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64664000	64664000	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64664000G>A	uc001obx.2	-	39	5476	c.5361C>T	c.(5359-5361)GCC>GCT	p.A1787A	ATG2A_uc001obw.2_Silent_p.A552A	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1787							protein binding			ovary(1)|central_nervous_system(1)	2						AGCCAAAGGAGGCAGCCCCTC	0.637											OREG0004026	type=REGULATORY REGION|Gene=BC027481|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	14	29					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64669638	64669638	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64669638G>A	uc001obx.2	-	29	4030	c.3915C>T	c.(3913-3915)CTC>CTT	p.L1305L	ATG2A_uc001obw.2_Silent_p.L70L	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1305							protein binding			ovary(1)|central_nervous_system(1)	2						ACGCCTGAGGGAGGTGGCCAC	0.647													22	47					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64675261	64675261	+	Silent	SNP	G	A	A	rs112442396		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64675261G>A	uc001obx.2	-	17	2581	c.2466C>T	c.(2464-2466)ATC>ATT	p.I822I		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	822							protein binding			ovary(1)|central_nervous_system(1)	2						TGGGCAGAAAGATGTGGACAC	0.632													7	24					0	0	1	0	0
PPP2R5B	5526	broad.mit.edu	37	11	64698931	64698931	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64698931C>T	uc001oby.2	+	9	1500	c.915C>T	c.(913-915)TTC>TTT	p.F305F	PPP2R5B_uc001obz.2_Silent_p.F305F	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	305					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						TGGTGCAGTTCCTGGAGAAGG	0.602													14	26					0	0	1	0	0
BATF2	116071	broad.mit.edu	37	11	64756878	64756878	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64756878G>A	uc001ocf.1	-	3	679	c.548C>T	c.(547-549)TCC>TTC	p.S183F	BATF2_uc001oce.1_Missense_Mutation_p.S98F	NM_138456	NP_612465	Q8N1L9	BATF2_HUMAN	basic leucine zipper transcription factor,	183						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTGCAGGCTGGAACCAGTGTG	0.657													11	30					0	0	1	0	0
SNX15	29907	broad.mit.edu	37	11	64803081	64803081	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64803081C>T	uc001oci.3	+	9	1263	c.610C>T	c.(610-612)CGA>TGA	p.R204*	SNX15_uc009ypy.2_Nonsense_Mutation_p.R204*|SNX15_uc001ocj.2_Nonsense_Mutation_p.R204*|SNX15_uc001ock.2_Nonsense_Mutation_p.R204*	NM_013306	NP_037438	Q9NRS6	SNX15_HUMAN	sorting nexin 15 isoform A	204					cell communication|intracellular protein transport	cytoplasmic vesicle membrane|cytosol	phosphatidylinositol binding|protein transporter activity			ovary(1)	1						TTCCCCTGCCCGAGGCCCCCT	0.637													54	147					0	0	1	0	0
NAALADL1	10004	broad.mit.edu	37	11	64815823	64815823	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64815823C>T	uc001ocn.2	-	9	1249	c.1233G>A	c.(1231-1233)GCG>GCA	p.A411A	NAALADL1_uc010rnw.1_5'UTR|NAALADL1_uc009ypz.2_RNA	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	411	NAALADase.|Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						CCCCCCAGCTCGCAAACACGA	0.582													9	99					0	0	1	0	0
NAALADL1	10004	broad.mit.edu	37	11	64821816	64821816	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64821816C>T	uc001ocn.2	-	6	914	c.898G>A	c.(898-900)GGA>AGA	p.G300R	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	300	NAALADase.|Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						GCCAAAGTTCCGTTGAGGTTA	0.637													15	40					0	0	1	0	0
NAALADL1	10004	broad.mit.edu	37	11	64824920	64824920	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64824920C>T	uc001ocn.2	-	4	542	c.526G>A	c.(526-528)GAG>AAG	p.E176K	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	176	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						GTCTGTAGCTCCTTAAAGTCT	0.607													22	49					0	0	1	0	0
NAALADL1	10004	broad.mit.edu	37	11	64825409	64825409	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64825409C>T	uc001ocn.2	-	3	434	c.418G>A	c.(418-420)GAG>AAG	p.E140K	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	140	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						CCCCCTTGCTCCCCGGTCACG	0.647													37	83					0	0	1	0	0
C11orf2	738	broad.mit.edu	37	11	64876153	64876153	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64876153C>T	uc001ocr.1	+	5	1250	c.1210C>T	c.(1210-1212)CGC>TGC	p.R404C	C11orf2_uc001ocs.1_Missense_Mutation_p.R280C	NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	404					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						ACGAGTGGCCCGCGAGCGCCT	0.751													6	6					0	0	1	0	0
C11orf2	738	broad.mit.edu	37	11	64876880	64876880	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64876880C>T	uc001ocr.1	+	6	1612	c.1572C>T	c.(1570-1572)CTC>CTT	p.L524L	TM7SF2_uc001oct.2_5'Flank|TM7SF2_uc010rny.1_5'Flank|TM7SF2_uc001ocu.2_5'Flank|TM7SF2_uc001ocv.2_5'Flank|C11orf2_uc001ocs.1_Silent_p.L400L	NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	524					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						CTGCCCTGCTCCTGCTGCTCT	0.612													8	72					0	0	1	0	0
TM7SF2	7108	broad.mit.edu	37	11	64882811	64882811	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64882811G>A	uc001oct.2	+	8	1065	c.918G>A	c.(916-918)GGG>GGA	p.G306G	TM7SF2_uc010rny.1_Silent_p.G190G|TM7SF2_uc001ocu.2_Intron|TM7SF2_uc001ocv.2_Silent_p.G327G|uc009yqb.1_5'Flank	NM_003273	NP_003264	O76062	ERG24_HUMAN	transmembrane 7 superfamily member 2	306					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane	delta14-sterol reductase activity			ovary(1)	1						TCTTCCGTGGGGCGAATTCCC	0.572													46	115					0	0	1	0	0
MRPL49	740	broad.mit.edu	37	11	64893018	64893018	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64893018C>T	uc001oda.1	+	3	379	c.288C>T	c.(286-288)GTC>GTT	p.V96V	MRPL49_uc001ocz.1_RNA	NM_004927	NP_004918	Q13405	RM49_HUMAN	mitochondrial ribosomal protein L49	96					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						ACATCCCCGTCTACAAGGACA	0.552													23	82					0	0	1	0	0
SYVN1	84447	broad.mit.edu	37	11	64899785	64899785	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64899785G>A	uc001odb.2	-	6	559	c.465C>T	c.(463-465)TTC>TTT	p.F155F	SYVN1_uc001odc.2_Silent_p.F155F|SYVN1_uc009yqc.2_Intron	NM_172230	NP_757385	Q86TM6	SYVN1_HUMAN	synoviolin 1 isoform b	155	Helical; (Potential).				ER-associated protein catabolic process|response to stress	endoplasmic reticulum membrane|integral to membrane|nucleus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(1)	1						CGTGGCTGACGAAGAGGAAGT	0.592													30	70					0	0	1	0	0
SLC22A20	440044	broad.mit.edu	37	11	64981483	64981483	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:64981483C>T	uc010roc.1	+	1	137	c.134C>T	c.(133-135)CCC>CTC	p.P45L	SLC22A20_uc010rob.1_Missense_Mutation_p.P45L	NM_001004326	NP_001004326	A6NK97	S22AK_HUMAN	solute carrier family 22, member 20	45	Extracellular (Potential).				ion transport	integral to membrane	transmembrane transporter activity			central_nervous_system(1)	1						GCCGCTGTCCCCCCCCACCAC	0.692													5	12					0	0	1	0	0
DPF2	5977	broad.mit.edu	37	11	65107856	65107856	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65107856C>T	uc001odm.2	+	2	45	c.33C>T	c.(31-33)CTC>CTT	p.L11L	DPF2_uc001odn.2_Silent_p.L11L|DPF2_uc010roe.1_Silent_p.L11L	NM_006268	NP_006259	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	11					apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						TTCCCTGCAGCCTTGGGGAGC	0.557													48	232					0	0	1	0	0
DPF2	5977	broad.mit.edu	37	11	65113244	65113244	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65113244C>T	uc001odm.2	+	7	757	c.745C>T	c.(745-747)CCT>TCT	p.P249S	DPF2_uc001odn.2_Missense_Mutation_p.P263S|DPF2_uc010roe.1_Intron	NM_006268	NP_006259	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	249					apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						ACCACCCACTCCTGTTTCCCA	0.532													18	43					0	0	1	0	0
TIGD3	220359	broad.mit.edu	37	11	65124002	65124002	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65124002C>T	uc001odo.3	+	2	886	c.723C>T	c.(721-723)ATC>ATT	p.I241I		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	241	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						ACCTGGGCATCCCCTGGTTAG	0.657													35	133					0	0	1	0	0
MALAT1	378938	broad.mit.edu	37	11	65272664	65272664	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65272664C>T	uc010roh.1	+	1		c.7432C>T			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TCAGGTACCCCTCACTAAAGG	0.498													18	36					0	0	1	0	0
SCYL1	57410	broad.mit.edu	37	11	65293661	65293661	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65293661T>C	uc001oea.1	+	4	519	c.442T>C	c.(442-444)TTC>CTC	p.F148L	SCYL1_uc009yqk.2_Missense_Mutation_p.F148L|SCYL1_uc001oeb.1_Missense_Mutation_p.F148L|SCYL1_uc001oec.1_Missense_Mutation_p.F148L|SCYL1_uc001oed.1_Missense_Mutation_p.F5L	NM_020680	NP_065731	Q96KG9	NTKL_HUMAN	SCY1-like 1 isoform A	148	Protein kinase.				regulation of transcription, DNA-dependent|retrograde vesicle-mediated transport, Golgi to ER|transcription, DNA-dependent	cis-Golgi network|COPI vesicle coat|ER-Golgi intermediate compartment|microtubule organizing center|nucleus	ATP binding|DNA binding|protein tyrosine kinase activity			skin(1)	1						GGCCGCCGTGTTCGTGGACCG	0.637													19	43					0	0	1	0	0
LTBP3	4054	broad.mit.edu	37	11	65319621	65319621	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65319621G>A	uc001oej.2	-	8	1622	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F	LTBP3_uc010roi.1_Silent_p.F334F|LTBP3_uc001oei.2_Silent_p.F451F|LTBP3_uc010roj.1_Silent_p.F152F|LTBP3_uc010rok.1_Silent_p.F362F	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	451	TB 2.					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						AGATCTCCTTGAACGCAGCTG	0.557											OREG0021081	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	94					0	0	1	0	0
MAP3K11	4296	broad.mit.edu	37	11	65373509	65373509	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65373509G>A	uc001oew.2	-	7	2140	c.1647C>T	c.(1645-1647)CCC>CCT	p.P549P	MAP3K11_uc001oev.2_5'UTR|MAP3K11_uc010rol.1_Silent_p.P292P|MAP3K11_uc001oex.1_Silent_p.P56P	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	549					activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						CCAGACGTCGGGGGGACTGGC	0.607													8	21					0	0	1	0	0
PCNXL3	399909	broad.mit.edu	37	11	65396365	65396366	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65396365_65396366CC>TT	uc001oey.2	+	24	3887_3888	c.3887_3888CC>TT	c.(3886-3888)GCC>GTT	p.A1296V	PCNXL3_uc001oez.2_Missense_Mutation_p.A183V	NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	1296	Helical; (Potential).					integral to membrane					0						CTAGGCAGTGCCGTCTTCATCA	0.634													11	23					0	0	1	0	0
SIPA1	6494	broad.mit.edu	37	11	65413779	65413779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65413779C>T	uc001ofb.2	+	7	1518	c.1351C>T	c.(1351-1353)CGC>TGC	p.R451C	SIPA1_uc010rom.1_Missense_Mutation_p.R451C|SIPA1_uc001ofd.2_Missense_Mutation_p.R451C	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	451	Rap-GAP.				cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						CACCACCATCCGCTCGCACTT	0.632													36	88					0	0	1	0	0
SIPA1	6494	broad.mit.edu	37	11	65417935	65417935	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65417935G>A	uc001ofb.2	+	15	3134	c.2967G>A	c.(2965-2967)CAG>CAA	p.Q989Q	SIPA1_uc010rom.1_Silent_p.Q887Q|SIPA1_uc001ofd.2_Silent_p.Q989Q	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	989	Potential.				cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						GGAAGCTGCAGGAGGACCTGC	0.632													15	53					0	0	1	0	0
RELA	5970	broad.mit.edu	37	11	65423223	65423223	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65423223G>A	uc001ofg.2	-	10	1109	c.969C>T	c.(967-969)GAC>GAT	p.D323D	RELA_uc001ofh.2_Silent_p.D320D|RELA_uc010ron.1_Silent_p.D334D|RELA_uc009yqr.2_Silent_p.D270D|RELA_uc001ofe.2_Silent_p.D323D|RELA_uc001off.2_Silent_p.D323D|RELA_uc009yqs.1_RNA	NM_021975	NP_068810	Q04206	TF65_HUMAN	v-rel reticuloendotheliosis viral oncogene	323					anti-apoptosis|cellular defense response|cytokine-mediated signaling pathway|defense response to virus|inflammatory response|innate immune response|interspecies interaction between organisms|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription, DNA-dependent|nerve growth factor receptor signaling pathway|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of inflammatory response|response to interleukin-1|response to UV-B|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|transcription factor complex	activating transcription factor binding|chromatin binding|identical protein binding|NF-kappaB binding|phosphate binding|protein kinase binding|protein N-terminus binding|repressing transcription factor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding			lung(3)|ovary(1)	4						GAGGCCGGGGGTCGGTGGGTC	0.627													26	60					0	0	1	0	0
DKFZp761E198	91056	broad.mit.edu	37	11	65545600	65545600	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65545600G>A	uc001ofo.3	-	1	2223	c.2193C>T	c.(2191-2193)TCC>TCT	p.S731S		NM_138368	NP_612377	Q2VPB7	YK046_HUMAN	hypothetical protein LOC91056	731							protein binding				0				READ - Rectum adenocarcinoma(159;0.167)		CTGGCAGGCAGGAATCCCAGA	0.632													38	88					0	0	1	0	0
OVOL1	5017	broad.mit.edu	37	11	65562597	65562597	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65562597C>T	uc001ofp.2	+	4	905	c.589C>T	c.(589-591)CAT>TAT	p.H197Y	OVOL1_uc001ofq.2_Missense_Mutation_p.H135Y	NM_004561	NP_004552	O14753	OVOL1_HUMAN	OVO-like 1 binding protein	197	C2H2-type 3.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.17)		CAAGAAGATCCATGGTGTGCA	0.627													13	57					0	0	1	0	0
MUS81	80198	broad.mit.edu	37	11	65632592	65632592	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65632592C>T	uc001ofv.3	+	13	1730	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	MUS81_uc001ofw.3_RNA|MUS81_uc001ofx.3_Silent_p.F16F	NM_025128	NP_079404	Q96NY9	MUS81_HUMAN	MUS81 endonuclease homolog	459					DNA recombination|DNA repair	nucleolus	3'-flap endonuclease activity|DNA binding|metal ion binding|protein binding				0				READ - Rectum adenocarcinoma(159;0.166)		TCAGTGACTTCAACGCAGGAG	0.597								Homologous_recombination					86	190					0	0	1	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65714447	65714447	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65714447G>A	uc001ogk.1	+	4	276	c.244G>A	c.(244-246)GGC>AGC	p.G82S	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	82											0						CAAGCCCAGGGGCCAGAGCAA	0.612													29	71					0	0	1	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65715015	65715015	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65715015G>A	uc001ogk.1	+	5	751	c.719G>A	c.(718-720)AGG>AAG	p.R240K	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	240											0						CGCCCCAGGAGGGGGTCGATC	0.632													16	43					0	0	1	0	0
CATSPER1	117144	broad.mit.edu	37	11	65788286	65788286	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65788286G>A	uc001ogt.2	-	6	2061	c.1923C>T	c.(1921-1923)GCC>GCT	p.A641A		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	641	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CCCTACCCTGGGCACGGCTGT	0.637													11	38					0	0	1	0	0
CATSPER1	117144	broad.mit.edu	37	11	65789011	65789011	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65789011C>T	uc001ogt.2	-	4	1785	c.1647G>A	c.(1645-1647)AAG>AAA	p.K549K		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	549	Helical; Name=Segment S4; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CCCGCAGGCTCTTGAAGACCT	0.612													7	28					0	0	1	0	0
CATSPER1	117144	broad.mit.edu	37	11	65789247	65789247	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65789247C>T	uc001ogt.2	-	3	1671	c.1533G>A	c.(1531-1533)TGG>TGA	p.W511*		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	511	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CCAAATTGTTCCAGAAGTCAA	0.592													14	82					0	0	1	0	0
CATSPER1	117144	broad.mit.edu	37	11	65789296	65789296	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65789296G>A	uc001ogt.2	-	3	1622	c.1484C>T	c.(1483-1485)GCC>GTC	p.A495V		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	495	Helical; Name=Segment S2; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CTTGAGCAGGGCTTCCACCAC	0.572													14	103					0	0	1	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793010	65793010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65793010C>T	uc001ogt.2	-	1	979	c.841G>A	c.(841-843)GAC>AAC	p.D281N		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	281	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						tggggatggtcgccatggtgg	0.184													3	11					0	0	1	0	0
GAL3ST3	89792	broad.mit.edu	37	11	65810712	65810712	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65810712C>T	uc001ogv.2	-	2	722	c.562G>A	c.(562-564)GAG>AAG	p.E188K	GAL3ST3_uc001ogw.2_Missense_Mutation_p.E188K	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	188	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						TAGTATGCCTCGGGCGCGCGC	0.677													11	38					0	0	1	0	0
GAL3ST3	89792	broad.mit.edu	37	11	65810761	65810761	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65810761G>A	uc001ogv.2	-	2	673	c.513C>T	c.(511-513)GCC>GCT	p.A171A	GAL3ST3_uc001ogw.2_Silent_p.A171A	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	171	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						CGCGCCGGAAGGCCGGGCAGT	0.662													6	25					0	0	1	0	0
GAL3ST3	89792	broad.mit.edu	37	11	65810929	65810929	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65810929G>A	uc001ogv.2	-	2	505	c.345C>T	c.(343-345)TTC>TTT	p.F115F	GAL3ST3_uc001ogw.2_Silent_p.F115F	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	115	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						CCGGGTGCACGAAGTGCGCCG	0.692													4	30					0	0	1	0	0
GAL3ST3	89792	broad.mit.edu	37	11	65810959	65810959	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65810959G>A	uc001ogv.2	-	2	475	c.315C>T	c.(313-315)TTC>TTT	p.F105F	GAL3ST3_uc001ogw.2_Silent_p.F105F	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	105	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						GGGGGTAGCAGAACTGGTGCT	0.687													12	24					0	0	1	0	0
GAL3ST3	89792	broad.mit.edu	37	11	65811104	65811104	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65811104G>A	uc001ogv.2	-	2	330	c.170C>T	c.(169-171)TCG>TTG	p.S57L	GAL3ST3_uc001ogw.2_Missense_Mutation_p.S57L	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	57	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						GCGCGGCGGCGAGTTCCGCAG	0.652													12	33					0	0	1	0	0
SF3B2	10992	broad.mit.edu	37	11	65829159	65829159	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:65829159G>A	uc001ogy.1	+	15	1822	c.1782G>A	c.(1780-1782)GGG>GGA	p.G594G		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	594					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						TCCCTCAGGGGAAGGAGTTCG	0.502													17	48					0	0	1	0	0
KLC2	64837	broad.mit.edu	37	11	66026257	66026257	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66026257C>T	uc010rov.1	+	2	435	c.192C>T	c.(190-192)TCC>TCT	p.S64S	KLC2_uc010row.1_Silent_p.S64S|KLC2_uc009yra.2_Silent_p.S64S|KLC2_uc001ohb.2_Silent_p.S64S|KLC2_uc010rox.1_Silent_p.S64S|KLC2_uc001ohc.2_Silent_p.S64S|KLC2_uc001ohd.2_Silent_p.S64S|KLC2_uc001ohe.1_5'Flank	NM_001134775	NP_001128247	Q9H0B6	KLC2_HUMAN	kinesin light chain 2 isoform 1	64					blood coagulation	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0						TGCGTCGCTCCCTGGAAGCCA	0.662											OREG0021097	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	38					0	0	1	0	0
TMEM151A	256472	broad.mit.edu	37	11	66062685	66062685	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66062685C>T	uc001ohl.2	+	2	1080	c.968C>T	c.(967-969)TCG>TTG	p.S323L		NM_153266	NP_694998	Q8N4L1	T151A_HUMAN	transmembrane protein 151A	323						integral to membrane				central_nervous_system(1)	1						GGCGCCAGCTcgcccccgccg	0.547													5	11					0	0	1	0	0
CD248	57124	broad.mit.edu	37	11	66082657	66082657	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66082657G>A	uc001ohm.1	-	1	1859	c.1842C>T	c.(1840-1842)CCC>CCT	p.P614P		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	614	Pro-rich.|Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	GGAGGGCTGCGGGCTGGGTGG	0.622													45	67					0	0	1	0	0
CD248	57124	broad.mit.edu	37	11	66083207	66083207	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66083207G>A	uc001ohm.1	-	1	1309	c.1292C>T	c.(1291-1293)CCC>CTC	p.P431L		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	431	Pro-rich.|Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	ACTGAGCGGGGGTGGCCAGGT	0.657													58	93					0	0	1	0	0
CD248	57124	broad.mit.edu	37	11	66083828	66083828	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66083828G>A	uc001ohm.1	-	1	688	c.671C>T	c.(670-672)TCA>TTA	p.S224L		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	224	Sushi.|Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	CCCAGCCCGTGACCAGCCCAC	0.682													15	56					0	0	1	0	0
CD248	57124	broad.mit.edu	37	11	66084128	66084128	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66084128C>T	uc001ohm.1	-	1	388	c.371G>A	c.(370-372)GGC>GAC	p.G124D		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	124	C-type lectin.|Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	CGGGCAGGGGCCTCCAGAGGC	0.711													13	29					0	0	1	0	0
SLC29A2	3177	broad.mit.edu	37	11	66136562	66136562	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66136562G>A	uc001oht.2	-	4	613	c.384C>T	c.(382-384)TCC>TCT	p.S128S	SLC29A2_uc001ohs.2_Silent_p.S8S|SLC29A2_uc010rpb.1_RNA|SLC29A2_uc009yrf.2_Silent_p.S8S|SLC29A2_uc001ohu.2_Silent_p.S128S|SLC29A2_uc001ohv.2_Silent_p.S128S|uc001ohw.1_RNA	NM_001532	NP_001523	Q14542	S29A2_HUMAN	solute carrier family 29 (nucleoside	128	Helical; (Potential).				cell proliferation|nucleobase, nucleoside and nucleotide metabolic process	basolateral plasma membrane|integral to plasma membrane|nuclear membrane|nucleolus	nucleoside transmembrane transporter activity			ovary(1)	1						CCATGGTGATGGAGAAGAAGG	0.607													3	5					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66189691	66189691	+	Silent	SNP	G	A	A	rs147825645	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66189691G>A	uc001ohx.1	+	2	452	c.276G>A	c.(274-276)GGG>GGA	p.G92G	NPAS4_uc010rpc.1_5'UTR	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	92	PAS 1.				transcription, DNA-dependent		DNA binding|signal transducer activity				0						CAGCCGAGGGGAAATTGCTCT	0.602													29	80					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66190265	66190265	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66190265G>A	uc001ohx.1	+	4	727	c.551G>A	c.(550-552)GGA>GAA	p.G184E	NPAS4_uc010rpc.1_Missense_Mutation_p.E11K	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	184					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TACTGGGCAGGAAATCCCGTG	0.622													41	92					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66190294	66190294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66190294C>T	uc001ohx.1	+	4	756	c.580C>T	c.(580-582)CCT>TCT	p.P194S	NPAS4_uc010rpc.1_Silent_p.P20P	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	194					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TTTCTGTGCCCCTCTGGAGCC	0.622													20	107					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66191487	66191487	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66191487C>T	uc001ohx.1	+	7	1302	c.1126C>T	c.(1126-1128)CCC>TCC	p.P376S	NPAS4_uc010rpc.1_Missense_Mutation_p.P166S	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	376					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CACCAGCTTCCCCAGTGCTCC	0.552													81	188					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66191710	66191710	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66191710C>T	uc001ohx.1	+	7	1525	c.1349C>T	c.(1348-1350)ACC>ATC	p.T450I	NPAS4_uc010rpc.1_Missense_Mutation_p.T240I	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	450					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CATTTGCCCACCCCATCCAGC	0.562													82	187					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66192132	66192132	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66192132C>T	uc001ohx.1	+	7	1947	c.1771C>T	c.(1771-1773)CTA>TTA	p.L591L	NPAS4_uc010rpc.1_Silent_p.L381L	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	591					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GCTCTTGGCCCTAGCCCAGCT	0.587													28	109					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66192507	66192507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66192507G>A	uc001ohx.1	+	7	2322	c.2146G>A	c.(2146-2148)GAT>AAT	p.D716N	NPAS4_uc010rpc.1_Missense_Mutation_p.D506N	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	716					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CATCTTCATGGATCTCTCTAC	0.592													45	71					0	0	1	0	0
DPP3	10072	broad.mit.edu	37	11	66254783	66254783	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66254783C>T	uc001oig.1	+	5	605	c.543C>T	c.(541-543)GCC>GCT	p.A181A	DPP3_uc001oif.1_Silent_p.A181A|DPP3_uc010rpe.1_Silent_p.A170A	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	181					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						TGGAAGATGCCAAATTGGCCC	0.542													20	62					0	0	1	0	0
DPP3	10072	broad.mit.edu	37	11	66258726	66258726	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66258726C>T	uc001oig.1	+	7	732	c.670C>T	c.(670-672)CCT>TCT	p.P224S	DPP3_uc001oif.1_Missense_Mutation_p.P224S|DPP3_uc010rpe.1_Missense_Mutation_p.P213S	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	224					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						TTCCCCAGAGCCTTCCCTGGA	0.552											OREG0021109	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	161					0	0	1	0	0
DPP3	10072	broad.mit.edu	37	11	66259201	66259201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66259201C>T	uc001oig.1	+	9	1024	c.962C>T	c.(961-963)CCC>CTC	p.P321L	DPP3_uc001oif.1_Missense_Mutation_p.P321L|DPP3_uc010rpe.1_Missense_Mutation_p.P310L	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	321					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						TACCGCGACCCCTTTGGTTCC	0.612													88	197					0	0	1	0	0
ACTN3	89	broad.mit.edu	37	11	66322807	66322807	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66322807C>T	uc001oio.1	+	7	705	c.687C>T	c.(685-687)TAC>TAT	p.Y229Y	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	229	Actin-binding.|CH 2.				focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						CAGAGAAATACCTGGACATCC	0.562													22	89					0	0	1	0	0
CCDC87	55231	broad.mit.edu	37	11	66358116	66358116	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66358116C>G	uc001oiq.3	-	1	2439	c.2371G>C	c.(2371-2373)GAG>CAG	p.E791Q	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	791										ovary(1)|skin(1)	2						AAGATTAACTCTATCTCCTCC	0.517													64	162					0	0	1	0	0
CCDC87	55231	broad.mit.edu	37	11	66359505	66359505	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66359505G>A	uc001oiq.3	-	1	1050	c.982C>T	c.(982-984)CCT>TCT	p.P328S	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	328										ovary(1)|skin(1)	2						GGGAGTGGAGGAAGGCCCAAC	0.617													12	66					0	0	1	0	0
CCDC87	55231	broad.mit.edu	37	11	66359609	66359610	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66359609_66359610GG>AA	uc001oiq.3	-	1	945_946	c.877_878CC>TT	c.(877-879)CCC>TTC	p.P293F	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	293										ovary(1)|skin(1)	2						CCTGCTGGTGGGGGCCACAGGA	0.604													35	73					0	0	1	0	0
RBM14	10432	broad.mit.edu	37	11	66392364	66392364	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66392364C>T	uc001oit.2	+	2	1156	c.1017C>T	c.(1015-1017)GCC>GCT	p.A339A	RBM14_uc009yrh.2_Intron|RBM14_uc009yri.2_Intron|RBM4_uc009yrj.2_Intron|RBM4_uc009yrk.2_Intron	NM_006328	NP_006319	Q96PK6	RBM14_HUMAN	RNA binding motif protein 14	339	TRBP-interacting domain.|Ala-rich.				DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|histone deacetylation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus	mediator complex|ribonucleoprotein complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|protein binding, bridging|RNA binding|RNA polymerase II transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						CCTCCCTTGCCTCCTATGGTA	0.612													36	90					0	0	1	0	0
PC	5091	broad.mit.edu	37	11	66638892	66638892	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66638892G>A	uc001ojn.1	-	4	430	c.381C>T	c.(379-381)TTC>TTT	p.F127F	PC_uc001ojo.1_Silent_p.F127F|PC_uc001ojp.1_Silent_p.F127F	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	127	Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	AGGCCTGGGCGAAGTCCGCTC	0.632													23	192					0	0	1	0	0
SYT12	91683	broad.mit.edu	37	11	66802194	66802194	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66802194G>A	uc009yrl.2	+	3	343	c.113G>A	c.(112-114)AGC>AAC	p.S38N	SYT12_uc001oju.2_Missense_Mutation_p.S38N	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	38	Helical; (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						GCAGCTGTGAGCCTGTGGAAG	0.632													22	61					0	0	1	0	0
SYT12	91683	broad.mit.edu	37	11	66811158	66811158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66811158C>T	uc009yrl.2	+	5	901	c.671C>T	c.(670-672)CCC>CTC	p.P224L	SYT12_uc001oju.2_Missense_Mutation_p.P224L	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	224	C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						TTCTCCATCCCCCTGGATCCC	0.522													43	97					0	0	1	0	0
SYT12	91683	broad.mit.edu	37	11	66811188	66811188	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66811188G>A	uc009yrl.2	+	5	931	c.701G>A	c.(700-702)AGC>AAC	p.S234N	SYT12_uc001oju.2_Missense_Mutation_p.S234N	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	234	C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						GAGGAGAAGAGCCTGCGGTTT	0.557													36	70					0	0	1	0	0
SYT12	91683	broad.mit.edu	37	11	66816097	66816097	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66816097G>A	uc009yrl.2	+	8	1365	c.1135G>A	c.(1135-1137)GGC>AGC	p.G379S	SYT12_uc001oju.2_Missense_Mutation_p.G379S	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	379	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						CAGCAGCGACGGCCGTGGGGA	0.627													30	53					0	0	1	0	0
RHOD	29984	broad.mit.edu	37	11	66834233	66834233	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:66834233G>A	uc001ojv.2	+	3	330	c.245G>A	c.(244-246)CGG>CAG	p.R82Q		NM_014578	NP_055393	O00212	RHOD_HUMAN	ras homolog D precursor	82					regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity				0						GACCGCCTGCGGCCCCTGTTC	0.607													76	126					0	0	1	0	0
KDM2A	22992	broad.mit.edu	37	11	67017891	67017891	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67017891C>T	uc001ojw.2	+	17	3254	c.2390C>T	c.(2389-2391)TCG>TTG	p.S797L	KDM2A_uc001ojx.2_Intron|KDM2A_uc001ojy.2_Missense_Mutation_p.S491L|KDM2A_uc010rpn.1_Missense_Mutation_p.S358L|KDM2A_uc001ojz.1_Missense_Mutation_p.S255L|KDM2A_uc001oka.2_5'Flank	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	797					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						ATCCGGGGATCGTACCTCACT	0.587													28	75					0	0	1	0	0
KDM2A	22992	broad.mit.edu	37	11	67022482	67022482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67022482C>T	uc001ojw.2	+	21	4309	c.3445C>T	c.(3445-3447)CTC>TTC	p.L1149F	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Missense_Mutation_p.L843F|KDM2A_uc001ojz.1_3'UTR|KDM2A_uc001oka.2_Missense_Mutation_p.L273F	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	1149	LRR 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						CATCAACAGCCTCTACTGCCT	0.532													3	12					0	0	1	0	0
ADRBK1	156	broad.mit.edu	37	11	67051805	67051805	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67051805C>T	uc009yrn.1	+	18	1881	c.1615C>T	c.(1615-1617)CGC>TGC	p.R539C	ADRBK1_uc009yrm.1_Intron	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	539					activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	GCTGGAGGCTCGCAAGAAAGC	0.577													7	46					0	0	1	0	0
CLCF1	23529	broad.mit.edu	37	11	67133074	67133074	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67133074C>T	uc001okq.2	-	3	407	c.211G>A	c.(211-213)GAG>AAG	p.E71K	LOC100130987_uc010rpo.1_Intron|CLCF1_uc010rpp.1_Missense_Mutation_p.E61K	NM_013246	NP_037378	Q9UBD9	CLCF1_HUMAN	cardiotrophin-like cytokine factor 1 precursor	71					B cell differentiation|cytokine-mediated signaling pathway|JAK-STAT cascade|negative regulation of neuron apoptosis|positive regulation of astrocyte differentiation|positive regulation of B cell proliferation|positive regulation of immunoglobulin production|positive regulation of isotype switching to IgE isotypes|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	ciliary neurotrophic factor receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity				0			BRCA - Breast invasive adenocarcinoma(15;2.39e-06)			AAGTCTGGCTCGTTGAAAGGG	0.612													31	82					0	0	1	0	0
RAD9A	5883	broad.mit.edu	37	11	67161231	67161231	+	Missense_Mutation	SNP	C	T	T	rs144155838	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67161231C>T	uc001okr.2	+	5	512	c.419C>T	c.(418-420)TCG>TTG	p.S140L	RAD9A_uc001oks.2_5'Flank	NM_004584	NP_004575	Q99638	RAD9A_HUMAN	RAD9 homolog	140					DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint	nucleoplasm	3'-5' exonuclease activity|exodeoxyribonuclease III activity|histone deacetylase binding|protein kinase binding|SH3 domain binding				0			BRCA - Breast invasive adenocarcinoma(15;8.53e-07)			GACCCAGCCTCGTGCCCCCAC	0.657								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					7	14					0	0	1	0	0
PPP1CA	5499	broad.mit.edu	37	11	67166500	67166500	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67166500C>T	uc001okw.1	-	5	781	c.658G>A	c.(658-660)GAC>AAC	p.D220N	PPP1CA_uc009yro.1_Missense_Mutation_p.D38N|PPP1CA_uc001okt.1_Missense_Mutation_p.D225N|PPP1CA_uc001oku.1_Missense_Mutation_p.D231N|PPP1CA_uc001okv.1_Missense_Mutation_p.D176N|PPP1CA_uc001okx.1_Missense_Mutation_p.D308N|PPP1CA_uc001oky.2_Missense_Mutation_p.D220N	NM_002708	NP_002699	P62136	PP1A_HUMAN	protein phosphatase 1, catalytic subunit, alpha	220					cell cycle|cell division|glycogen metabolic process|protein dephosphorylation|triglyceride catabolic process	cytosol|MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|protein binding|protein phosphatase type 1 regulator activity|protein serine/threonine phosphatase activity			breast(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(15;8.53e-07)			ACGCCACGGTCGTTCTCGCCC	0.627													23	86					0	0	1	0	0
TBC1D10C	374403	broad.mit.edu	37	11	67174477	67174477	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67174477C>T	uc001ola.2	+	8	857	c.828C>T	c.(826-828)TTC>TTT	p.F276F	PPP1CA_uc001okx.1_Intron|TBC1D10C_uc001okz.2_Intron|TBC1D10C_uc001olb.2_RNA	NM_198517	NP_940919	Q8IV04	TB10C_HUMAN	TBC1 domain family, member 10C	276	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GGGATGCCTTCCTCAGTGAGG	0.662													48	120					0	0	1	0	0
CARNS1	57571	broad.mit.edu	37	11	67191785	67191785	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67191785C>T	uc009yrp.2	+	9	2649	c.2197C>T	c.(2197-2199)CGT>TGT	p.R733C	CARNS1_uc001olc.3_Missense_Mutation_p.R872C	NM_020811	NP_065862	A5YM72	CRNS1_HUMAN	ATP-grasp domain containing 1	733					carnosine biosynthetic process		ATP binding|carnosine synthase activity|metal ion binding				0						CCCACGTGCTCGTGGCCATCT	0.657													3	22					0	0	1	0	0
RPS6KB2	6199	broad.mit.edu	37	11	67201482	67201482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67201482C>T	uc001old.2	+	11	1005	c.923C>T	c.(922-924)CCC>CTC	p.P308L	RPS6KB2_uc001olf.2_Missense_Mutation_p.P108L|RPS6KB2_uc001olg.2_Missense_Mutation_p.P308L|RPS6KB2_uc009yrq.2_Missense_Mutation_p.P108L|RPS6KB2_uc001ole.2_RNA|RPS6KB2_uc001olh.2_RNA|RPS6KB2_uc009yrr.2_Missense_Mutation_p.P139L	NM_003952	NP_003943	Q9UBS0	KS6B2_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	308	Protein kinase.				nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of translational initiation|translation	nucleoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|stomach(1)|lung(1)|salivary_gland(1)	7			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			AAACGGAATCCCAGCCAGCGG	0.642													7	53					0	0	1	0	0
GPR152	390212	broad.mit.edu	37	11	67219123	67219123	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67219123G>A	uc001olm.2	-	1	1078	c.1073C>T	c.(1072-1074)CCT>CTT	p.P358L	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	358	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			GTTCACCTGAGGCTGGGCCAC	0.627													22	38					0	0	1	0	0
GPR152	390212	broad.mit.edu	37	11	67219300	67219300	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67219300C>T	uc001olm.2	-	1	901	c.896G>A	c.(895-897)AGT>AAT	p.S299N	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	299	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			GAGGTCGGCACTGGCCATGAG	0.657													11	78					0	0	1	0	0
GPR152	390212	broad.mit.edu	37	11	67219664	67219664	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67219664C>T	uc001olm.2	-	1	537	c.532G>A	c.(532-534)GAC>AAC	p.D178N	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	178	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			ATGACCAGGTCGTACCACCAG	0.662													42	74					0	0	1	0	0
GPR152	390212	broad.mit.edu	37	11	67219760	67219760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67219760G>A	uc001olm.2	-	1	441	c.436C>T	c.(436-438)CGC>TGC	p.R146C	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	146	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			AGGGGCAGGCGGACTGGGCGG	0.701													14	32					0	0	1	0	0
GPR152	390212	broad.mit.edu	37	11	67220115	67220115	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67220115G>A	uc001olm.2	-	1	86	c.81C>T	c.(79-81)CCC>CCT	p.P27P	uc009yrw.1_RNA|CABP4_uc001oln.2_5'UTR|CABP4_uc001olo.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	27	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			AGCCACCTTGGGGGTAGGAGT	0.652													4	36					0	0	1	0	0
CABP2	51475	broad.mit.edu	37	11	67288529	67288529	+	Missense_Mutation	SNP	C	T	T	rs140767804	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67288529C>T	uc001omc.1	-	4	448	c.346G>A	c.(346-348)GAG>AAG	p.E116K	CABP2_uc001omd.1_Missense_Mutation_p.E59K|CABP2_uc001ome.1_Missense_Mutation_p.E122K	NM_016366	NP_057450	Q9NPB3	CABP2_HUMAN	calcium binding protein 2 isoform 1	116	EF-hand 2.				signal transduction	Golgi apparatus|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1						AGCTCCATCTCGGTGGGCATG	0.627													44	89					0	0	1	0	0
NDUFV1	4723	broad.mit.edu	37	11	67379625	67379625	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67379625C>T	uc001omj.2	+	9	1350	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	NDUFV1_uc010rpv.1_Silent_p.F298F|NDUFV1_uc001oml.2_Silent_p.F392F|NDUFV1_uc001omk.3_Silent_p.F390F|NDUFV1_uc010rpw.1_Silent_p.F108F	NM_007103	NP_009034	P49821	NDUV1_HUMAN	NADH dehydrogenase ubiquinone flavoprotein 1	399					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|FMN binding|metal ion binding|NAD binding|NADH dehydrogenase (ubiquinone) activity			skin(1)	1					NADH(DB00157)	TGGCACGTTTCGTGAGGGGGG	0.622													49	102					0	0	1	0	0
TBX10	347853	broad.mit.edu	37	11	67399174	67399174	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67399174G>A	uc001omp.2	-	8	1148	c.1060C>T	c.(1060-1062)CGG>TGG	p.R354W	NUDT8_uc001omn.2_5'Flank|NUDT8_uc001omo.1_5'Flank	NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	354					anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTATCAGCCCGGATGTTGGGG	0.652													3	17					0	0	1	0	0
TBX10	347853	broad.mit.edu	37	11	67402484	67402484	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67402484G>A	uc001omp.2	-	2	346	c.258C>T	c.(256-258)ATC>ATT	p.I86I		NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	86	T-box.				anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CCTTGGTGACGATCATCTCAG	0.647													14	30					0	0	1	0	0
ACY3	91703	broad.mit.edu	37	11	67410302	67410302	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67410302C>T	uc001omq.2	-	8	1024	c.853G>A	c.(853-855)GAG>AAG	p.E285K		NM_080658	NP_542389	Q96HD9	ACY3_HUMAN	aspartoacylase 3	285					interspecies interaction between organisms	apical plasma membrane|cytoplasm	hydrolase activity, acting on ester bonds|metal ion binding				0					L-Aspartic Acid(DB00128)	TAGGCAGCCTCGTTAATGAAC	0.597													36	54					0	0	1	0	0
ALDH3B2	222	broad.mit.edu	37	11	67430791	67430791	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67430791G>A	uc001omr.2	-	10	1492	c.1053C>T	c.(1051-1053)CCC>CCT	p.P351P	ALDH3B2_uc001oms.2_Silent_p.P351P	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	351					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	CCAGGCCGGAGGGGGCGAGCA	0.617													20	41					0	0	1	0	0
ALDH3B2	222	broad.mit.edu	37	11	67430797	67430797	+	Silent	SNP	G	A	A	rs111978289		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67430797G>A	uc001omr.2	-	10	1486	c.1047C>T	c.(1045-1047)CTC>CTT	p.L349L	ALDH3B2_uc001oms.2_Silent_p.L349L	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	349					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	CGGAGGGGGCGAGCAGGCAGG	0.617													13	42					0	0	1	0	0
ALDH3B2	222	broad.mit.edu	37	11	67431935	67431935	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67431935C>T	uc001omr.2	-	8	1244	c.805G>A	c.(805-807)GAG>AAG	p.E269K	ALDH3B2_uc001oms.2_Missense_Mutation_p.E269K|ALDH3B2_uc009ysa.1_Missense_Mutation_p.E269K	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	269					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	TTGATGGCCTCGTCCACGCTC	0.652													46	89					0	0	1	0	0
UNC93B1	81622	broad.mit.edu	37	11	67766748	67766748	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67766748G>A	uc001omw.1	-	5	662	c.582C>T	c.(580-582)TCC>TCT	p.S194S		NM_030930	NP_112192	Q9H1C4	UN93B_HUMAN	unc-93 homolog B1	194					innate immune response|intracellular protein transport|response to virus|toll-like receptor 3 signaling pathway|toll-like receptor 7 signaling pathway|toll-like receptor 9 signaling pathway	early phagosome|endoplasmic reticulum membrane|endosome|integral to membrane|lysosome					0						CCTTGTAGTGGGAGTACTCAT	0.607													13	22					0	0	1	0	0
TCIRG1	10312	broad.mit.edu	37	11	67815433	67815433	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:67815433C>T	uc001one.2	+	13	1656	c.1548C>T	c.(1546-1548)ATC>ATT	p.I516I	TCIRG1_uc001ong.2_Silent_p.I300I|TCIRG1_uc001onh.2_Silent_p.I218I|TCIRG1_uc001oni.2_Silent_p.I20I|TCIRG1_uc009ysd.2_5'Flank	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	516	Helical; (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						CCTTTGGCATCGATCCTGTGA	0.632													16	34					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68115441	68115441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68115441C>T	uc001ont.2	+	2	293	c.218C>T	c.(217-219)TCC>TTC	p.S73F	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	73	Beta-propeller 1.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						TTCCAGTTTTCCAAGGGAGCC	0.657													24	101					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68192613	68192613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68192613G>A	uc001ont.2	+	15	3355	c.3280G>A	c.(3280-3282)GAA>AAA	p.E1094K	LRP5_uc009ysg.2_Missense_Mutation_p.E504K	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1094	LDL-receptor class B 18.|Beta-propeller 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						AGCCAAGATCGAACGCGCAGC	0.657													13	65					0	0	1	0	0
SAPS3	55291	broad.mit.edu	37	11	68343463	68343463	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68343463C>T	uc001onw.2	+	14	1764	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F	SAPS3_uc001onv.2_Silent_p.F499F|SAPS3_uc001ony.3_Silent_p.F499F|SAPS3_uc001onx.2_Silent_p.F499F|SAPS3_uc009ysh.2_Silent_p.F448F|SAPS3_uc001onu.2_Silent_p.F448F|SAPS3_uc010rqc.1_Silent_p.F267F|SAPS3_uc010rqd.1_Silent_p.F211F|SAPS3_uc001onz.2_5'UTR	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	499					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			GGGAGACGTTCTGCACAAGCT	0.428													46	104					0	0	1	0	0
MTL5	9633	broad.mit.edu	37	11	68478463	68478463	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68478463C>T	uc001ooc.2	-	9	1353	c.1213G>A	c.(1213-1215)GAA>AAA	p.E405K		NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	405	CXC 2.				cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			TCTGGGCTTTCTTCATAATTT	0.393													20	51					0	0	1	0	0
CPT1A	1374	broad.mit.edu	37	11	68571514	68571514	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68571514G>A	uc001oog.3	-	5	679	c.509C>T	c.(508-510)TCG>TTG	p.S170L	CPT1A_uc001oof.3_Missense_Mutation_p.S170L|CPT1A_uc009ysj.2_Missense_Mutation_p.S170L	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	170	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	GCGAGGCAGCGATGTCTGGAA	0.458													25	56					0	0	1	0	0
MRPL21	219927	broad.mit.edu	37	11	68664142	68664142	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68664142G>A	uc001ooi.2	-	4	262	c.237C>T	c.(235-237)GTC>GTT	p.V79V	MRPL21_uc001ooh.2_5'UTR|MRPL21_uc010rqe.1_Silent_p.V79V	NM_181514	NP_852615	Q7Z2W9	RM21_HUMAN	mitochondrial ribosomal protein L21 isoform d	79					translation	mitochondrion|ribosome	RNA binding|structural constituent of ribosome				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CCTTCTTCACGACCTCTGCAG	0.632													27	100					0	0	1	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68696733	68696733	+	Silent	SNP	C	T	T	rs145314949	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68696733C>T	uc001ook.1	+	8	1245	c.1143C>T	c.(1141-1143)CTC>CTT	p.L381L	IGHMBP2_uc001ooj.1_RNA|IGHMBP2_uc001ool.1_5'Flank	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	381	Leu-rich.				cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CCCAGGCCCTCGAGGCGAGCT	0.627													24	85					0	0	1	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68701305	68701305	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68701305C>T	uc001ook.1	+	10	1563	c.1461C>T	c.(1459-1461)CCC>CCT	p.P487P	IGHMBP2_uc001ool.1_Silent_p.P111P|IGHMBP2_uc001oom.1_Silent_p.P65P	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	487					cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CGGGTGTGCCCCTGCTCTTGG	0.647													6	12					0	0	1	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68702871	68702871	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68702871C>T	uc001ook.1	+	12	1839	c.1737C>T	c.(1735-1737)TTC>TTT	p.F579F	IGHMBP2_uc001ool.1_Silent_p.F203F|IGHMBP2_uc001oom.1_Silent_p.F157F	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	579					cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TACTGTCCTTCGTCAGATCCA	0.537													9	70					0	0	1	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68704332	68704332	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68704332C>T	uc001ook.1	+	13	2486	c.2384C>T	c.(2383-2385)CCC>CTC	p.P795L	IGHMBP2_uc001ool.1_Missense_Mutation_p.P419L|IGHMBP2_uc001oom.1_Missense_Mutation_p.P373L	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	795	Gln/Pro-rich.				cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GCCCTGGGACCCCCAGCAGGG	0.706													12	24					0	0	1	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68707096	68707096	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68707096C>T	uc001ook.1	+	15	2981	c.2879C>T	c.(2878-2880)TCC>TTC	p.S960F	IGHMBP2_uc001ool.1_Missense_Mutation_p.S584F	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	960					cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			AAGAACGGATCCCTGGACCCA	0.657													5	30					0	0	1	0	0
MRGPRD	116512	broad.mit.edu	37	11	68747534	68747534	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68747534C>T	uc010rqf.1	-	1	922	c.922G>A	c.(922-924)GGT>AGT	p.G308S		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	308	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GTCTCCCCACCTTCCAGCTCG	0.672													21	66					0	0	1	0	0
MRGPRD	116512	broad.mit.edu	37	11	68747555	68747555	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68747555G>A	uc010rqf.1	-	1	901	c.901C>T	c.(901-903)CGC>TGC	p.R301C		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	301	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GGCTCCTCGCGAAGCGCCTGT	0.677													35	65					0	0	1	0	0
MRGPRD	116512	broad.mit.edu	37	11	68748123	68748123	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68748123C>T	uc010rqf.1	-	1	333	c.333G>A	c.(331-333)GTG>GTA	p.V111V		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	111	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GGCTCAGGCCCACTGTGTAGG	0.592													7	53					0	0	1	0	0
MRGPRD	116512	broad.mit.edu	37	11	68748346	68748346	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68748346G>A	uc010rqf.1	-	1	110	c.110C>T	c.(109-111)ACC>ATC	p.T37I		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	37	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GCACAGGCAGGTGAACATGGC	0.572													27	52					0	0	1	0	0
TPCN2	219931	broad.mit.edu	37	11	68835021	68835021	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68835021T>C	uc001oos.2	+	8	893	c.777T>C	c.(775-777)CCT>CCC	p.P259P	TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Silent_p.P174P|TPCN2_uc010rqg.1_Silent_p.P259P	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	259					cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			AGAACCTGCCTGAGTCTCTGA	0.652													28	78					0	0	1	0	0
TPCN2	219931	broad.mit.edu	37	11	68839451	68839451	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:68839451C>T	uc001oos.2	+	11	1137	c.1021C>T	c.(1021-1023)CTA>TTA	p.L341L	TPCN2_uc009ysk.1_RNA|TPCN2_uc001oor.2_Silent_p.L256L|TPCN2_uc010rqg.1_Silent_p.L341L|TPCN2_uc001oot.2_5'Flank	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	341	Cytoplasmic (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CTTTGAAGTCCTATCCTCCAT	0.627													27	94					0	0	1	0	0
MYEOV	26579	broad.mit.edu	37	11	69063588	69063588	+	Missense_Mutation	SNP	C	T	T	rs138762742	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:69063588C>T	uc001oov.2	+	3	1121	c.671C>T	c.(670-672)TCG>TTG	p.S224L	MYEOV_uc001oox.2_Intron|MYEOV_uc009ysl.2_Missense_Mutation_p.S224L|MYEOV_uc001oow.2_Missense_Mutation_p.S166L	NM_138768	NP_620123	Q96EZ4	MYEOV_HUMAN	myeloma overexpressed	224											0	all_lung(4;2.21e-19)|Lung NSC(4;6.13e-19)|Melanoma(5;0.00128)		LUSC - Lung squamous cell carcinoma(11;3.33e-11)|STAD - Stomach adenocarcinoma(18;0.00654)|LUAD - Lung adenocarcinoma(13;0.0713)	Kidney(183;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(183;3.23e-08)|Lung(977;0.00361)|LUSC - Lung squamous cell carcinoma(976;0.0153)		CTGGCAGAATCGAGCTGCCCT	0.637													31	47					0	0	1	0	0
MYEOV	26579	broad.mit.edu	37	11	69063826	69063826	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:69063826C>T	uc001oov.2	+	3	1359	c.909C>T	c.(907-909)CTC>CTT	p.L303L	MYEOV_uc001oox.2_Intron|MYEOV_uc009ysl.2_Silent_p.L303L|MYEOV_uc001oow.2_Silent_p.L245L	NM_138768	NP_620123	Q96EZ4	MYEOV_HUMAN	myeloma overexpressed	303											0	all_lung(4;2.21e-19)|Lung NSC(4;6.13e-19)|Melanoma(5;0.00128)		LUSC - Lung squamous cell carcinoma(11;3.33e-11)|STAD - Stomach adenocarcinoma(18;0.00654)|LUAD - Lung adenocarcinoma(13;0.0713)	Kidney(183;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(183;3.23e-08)|Lung(977;0.00361)|LUSC - Lung squamous cell carcinoma(976;0.0153)		accacctcctcctcctcctcc	0.244													4	4					0	0	1	0	0
FGF19	9965	broad.mit.edu	37	11	69514115	69514115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:69514115G>A	uc001opf.2	-	3	1029	c.566C>T	c.(565-567)TCT>TTT	p.S189F		NM_005117	NP_005108	O95750	FGF19_HUMAN	fibroblast growth factor 19 precursor	189					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of bile acid biosynthetic process|nervous system development|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import|positive regulation of JNK cascade	extracellular region	fibroblast growth factor receptor binding|growth factor activity			skin(1)	1	all_cancers(3;5.53e-114)|all_epithelial(3;1.34e-121)|Breast(3;9.28e-34)|all_lung(4;1.99e-21)|Lung NSC(4;4.65e-21)|Hepatocellular(3;6.15e-15)|Melanoma(5;1.89e-05)|Ovarian(3;0.0348)		Epithelial(3;3.05e-56)|all cancers(3;2.69e-50)|Lung(3;1.13e-16)|LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)|LUAD - Lung adenocarcinoma(13;0.0537)			CAGGGGCGAAGAGAACATGTC	0.577													34	95					0	0	1	0	0
FGF3	2248	broad.mit.edu	37	11	69625098	69625098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:69625098G>A	uc001oph.2	-	3	1186	c.695C>T	c.(694-696)TCC>TTC	p.S232F		NM_005247	NP_005238	P11487	FGF3_HUMAN	fibroblast growth factor 3 precursor	232					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of cardiac muscle tissue development|positive regulation of cell division|positive regulation of cell proliferation	extracellular region	growth factor activity			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(11;5.05e-15)|STAD - Stomach adenocarcinoma(18;0.0278)			CTCCAGCTGGGAGCCCAGTCT	0.672													4	11					0	0	1	0	0
FGF3	2248	broad.mit.edu	37	11	69625426	69625426	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:69625426C>T	uc001oph.2	-	3	858	c.367G>A	c.(367-369)GAG>AAG	p.E123K		NM_005247	NP_005238	P11487	FGF3_HUMAN	fibroblast growth factor 3 precursor	123					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of cardiac muscle tissue development|positive regulation of cell division|positive regulation of cell proliferation	extracellular region	growth factor activity			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(11;5.05e-15)|STAD - Stomach adenocarcinoma(18;0.0278)			TAGCCCAGCTCGTGGATCCGC	0.647													20	69					0	0	1	0	0
ANO1	55107	broad.mit.edu	37	11	69978115	69978115	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:69978115C>T	uc001opj.2	+	11	1493	c.1188C>T	c.(1186-1188)GCC>GCT	p.A396A	ANO1_uc001opk.1_Silent_p.A368A|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.A131A	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	396	Extracellular (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						CAGCCTGCGCCACGGCCCGCG	0.582													8	11					0	0	1	0	0
ANO1	55107	broad.mit.edu	37	11	70007780	70007780	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70007780C>T	uc001opj.2	+	18	2138	c.1833C>T	c.(1831-1833)TTC>TTT	p.F611F	ANO1_uc001opk.1_Silent_p.F553F|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.F320F	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	611	Helical; (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						TCAAGGCTTTCCTGCTGAAGT	0.537													25	142					0	0	1	0	0
ANO1	55107	broad.mit.edu	37	11	70007795	70007795	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70007795G>A	uc001opj.2	+	18	2153	c.1848G>A	c.(1846-1848)GTG>GTA	p.V616V	ANO1_uc001opk.1_Silent_p.V558V|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.V325V	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	616	Helical; (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						TGAAGTTTGTGAATTCCTACA	0.532													44	139					0	0	1	0	0
ANO1	55107	broad.mit.edu	37	11	70017033	70017033	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70017033C>T	uc001opj.2	+	22	2543	c.2238C>T	c.(2236-2238)TTC>TTT	p.F746F	ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.F455F|ANO1_uc010rql.1_5'UTR	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	746	Helical; (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						TCGCCTCCTTCCCCCTGGCCC	0.587													6	18					0	0	1	0	0
ANO1	55107	broad.mit.edu	37	11	70017060	70017060	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70017060G>A	uc001opj.2	+	22	2570	c.2265G>A	c.(2263-2265)CTG>CTA	p.L755L	ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.L464L|ANO1_uc010rql.1_5'UTR	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	755	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						TTGCGCTGCTGAACAACATCA	0.582													4	19					0	0	1	0	0
ANO1	55107	broad.mit.edu	37	11	70031747	70031747	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70031747C>T	uc001opj.2	+	25	2945	c.2640C>T	c.(2638-2640)TCC>TCT	p.S880S	ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.S589S|ANO1_uc010rql.1_Silent_p.S54S	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	880	Extracellular (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						ACGACATCTCCAAGGACTTCT	0.577													16	80					0	0	1	0	0
PPFIA1	8500	broad.mit.edu	37	11	70118404	70118404	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70118404C>T	uc001opo.2	+	2	324	c.126C>T	c.(124-126)TCC>TCT	p.S42S	PPFIA1_uc001opn.1_Silent_p.S42S|PPFIA1_uc001opp.2_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	42	Potential.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			TGATGGTCTCCATGCTAGAAG	0.532													20	104					0	0	1	0	0
PPFIA1	8500	broad.mit.edu	37	11	70189923	70189923	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70189923C>T	uc001opo.2	+	15	2054	c.1856C>T	c.(1855-1857)CCC>CTC	p.P619L	PPFIA1_uc001opn.1_Missense_Mutation_p.P619L|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	619					cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			CTGCTATCGCCCAGCGGGCAG	0.552													7	42					0	0	1	0	0
CTTN	2017	broad.mit.edu	37	11	70260694	70260694	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70260694C>T	uc001opv.3	+	6	544	c.338C>T	c.(337-339)TCG>TTG	p.S113L	CTTN_uc001opu.2_Missense_Mutation_p.S113L|CTTN_uc001opw.3_Missense_Mutation_p.S113L	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	113	Cortactin 1.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		AAGCACTGCTCGCAGGTGGAC	0.552													28	97					0	0	1	0	0
CTTN	2017	broad.mit.edu	37	11	70260710	70260710	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70260710C>T	uc001opv.3	+	6	560	c.354C>T	c.(352-354)GTC>GTT	p.V118V	CTTN_uc001opu.2_Silent_p.V118V|CTTN_uc001opw.3_Silent_p.V118V	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	118	Cortactin 2.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		TGGACTCGGTCCGTGGCTTCG	0.562													22	103					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70319451	70319451	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70319451C>T	uc001oqc.2	-	22	5151	c.5073G>A	c.(5071-5073)CAG>CAA	p.Q1691Q	SHANK2_uc010rqn.1_Silent_p.Q1103Q|SHANK2_uc001opz.2_Silent_p.Q1096Q|uc009ysn.1_Intron|SHANK2_uc001opy.2_Silent_p.Q27Q	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1312					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GGGGCCGGCTCTGCAGGGTGA	0.617													7	35					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70331568	70331568	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70331568C>T	uc001oqc.2	-	21	4908	c.4830G>A	c.(4828-4830)GAG>GAA	p.E1610E	SHANK2_uc010rqn.1_Silent_p.E1022E|SHANK2_uc001opz.2_Silent_p.E1015E|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1231					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GGCTTTTGATCTCTGTGACGT	0.443													22	121					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70331606	70331606	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70331606G>A	uc001oqc.2	-	21	4870	c.4792C>T	c.(4792-4794)CAG>TAG	p.Q1598*	SHANK2_uc010rqn.1_Nonsense_Mutation_p.Q1010*|SHANK2_uc001opz.2_Nonsense_Mutation_p.Q1003*|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1219					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GTCCTTGGCTGGAGAACCTTG	0.428													34	108					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70331666	70331666	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70331666G>A	uc001oqc.2	-	21	4810	c.4732C>T	c.(4732-4734)CCC>TCC	p.P1578S	SHANK2_uc010rqn.1_Missense_Mutation_p.P990S|SHANK2_uc001opz.2_Missense_Mutation_p.P983S|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1199					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			gcgggcggggggATAACAAAG	0.423													77	102					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70331697	70331697	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70331697G>A	uc001oqc.2	-	21	4779	c.4701C>T	c.(4699-4701)CTC>CTT	p.L1567L	SHANK2_uc010rqn.1_Silent_p.L979L|SHANK2_uc001opz.2_Silent_p.L972L|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1188					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CTTCTTCCACGAGCGCGTCTT	0.403													61	172					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70331897	70331897	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70331897C>T	uc001oqc.2	-	21	4579	c.4501G>A	c.(4501-4503)GAC>AAC	p.D1501N	SHANK2_uc010rqn.1_Missense_Mutation_p.D913N|SHANK2_uc001opz.2_Missense_Mutation_p.D906N|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1122					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			AGGTGGTGGTCGCTGCTACTC	0.582													37	24					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70332205	70332205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70332205G>A	uc001oqc.2	-	21	4271	c.4193C>T	c.(4192-4194)TCC>TTC	p.S1398F	SHANK2_uc010rqn.1_Missense_Mutation_p.S810F|SHANK2_uc001opz.2_Missense_Mutation_p.S803F|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1019					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CAAGTCCACGGATGCCAGAGG	0.567													29	70					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70332299	70332299	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70332299G>A	uc001oqc.2	-	21	4177	c.4099C>T	c.(4099-4101)CCC>TCC	p.P1367S	SHANK2_uc010rqn.1_Missense_Mutation_p.P779S|SHANK2_uc001opz.2_Missense_Mutation_p.P772S|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	988					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			ACGGTGGTGGGCTCGGGGGCA	0.627													20	30					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70332700	70332700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70332700C>T	uc001oqc.2	-	21	3776	c.3698G>A	c.(3697-3699)GGA>GAA	p.G1233E	SHANK2_uc010rqn.1_Missense_Mutation_p.G645E|SHANK2_uc001opz.2_Missense_Mutation_p.G638E|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	854					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CCCTTTGGGTCCCTGTTGAGA	0.607													50	79					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70332825	70332825	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70332825C>T	uc001oqc.2	-	21	3651	c.3573G>A	c.(3571-3573)GCG>GCA	p.A1191A	SHANK2_uc010rqn.1_Silent_p.A603A|SHANK2_uc001opz.2_Silent_p.A596A|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	812					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TGCCGCTGCTCGCGGAGGGCA	0.706													19	64					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70332847	70332847	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70332847C>T	uc001oqc.2	-	21	3629	c.3551G>A	c.(3550-3552)AGC>AAC	p.S1184N	SHANK2_uc010rqn.1_Missense_Mutation_p.S596N|SHANK2_uc001opz.2_Missense_Mutation_p.S589N|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	805					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TGCTGGGCTGCTCTCGGGCCC	0.692													26	63					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70332873	70332873	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70332873G>A	uc001oqc.2	-	21	3603	c.3525C>T	c.(3523-3525)TCC>TCT	p.S1175S	SHANK2_uc010rqn.1_Silent_p.S587S|SHANK2_uc001opz.2_Silent_p.S580S|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	796					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CTTTGGACGTGGAATTCAGCG	0.697													10	82					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70332927	70332927	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70332927G>A	uc001oqc.2	-	21	3549	c.3471C>T	c.(3469-3471)TTC>TTT	p.F1157F	SHANK2_uc010rqn.1_Silent_p.F569F|SHANK2_uc001opz.2_Silent_p.F562F|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	778					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CGCCACCCACGAAATGGTTTT	0.672													29	69					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70333020	70333020	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70333020G>A	uc001oqc.2	-	21	3456	c.3378C>T	c.(3376-3378)TTC>TTT	p.F1126F	SHANK2_uc010rqn.1_Silent_p.F538F|SHANK2_uc001opz.2_Silent_p.F531F|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	747					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CCTCCTCGGGGAACATGGAGG	0.667													14	45					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70333073	70333073	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70333073C>T	uc001oqc.2	-	21	3403	c.3325G>A	c.(3325-3327)GAT>AAT	p.D1109N	SHANK2_uc010rqn.1_Missense_Mutation_p.D521N|SHANK2_uc001opz.2_Missense_Mutation_p.D514N|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	730					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			ACATCCTCATCCCCCAGGTCT	0.697													15	37					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70333092	70333092	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70333092G>T	uc001oqc.2	-	21	3384	c.3306C>A	c.(3304-3306)TTC>TTA	p.F1102L	SHANK2_uc010rqn.1_Missense_Mutation_p.F514L|SHANK2_uc001opz.2_Missense_Mutation_p.F507L|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	723					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CTGTGGAGAGGAAGGCCGGGG	0.692													19	42					4.96729e-08	4.9802e-08	1	1	0
SHANK2	22941	broad.mit.edu	37	11	70333310	70333310	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70333310G>A	uc001oqc.2	-	21	3166	c.3088C>T	c.(3088-3090)CCT>TCT	p.P1030S	SHANK2_uc010rqn.1_Missense_Mutation_p.P442S|SHANK2_uc001opz.2_Missense_Mutation_p.P435S|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	651					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GTCGGGATAGGGATGGAGCAC	0.662													51	125					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70333557	70333557	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70333557C>T	uc001oqc.2	-	21	2919	c.2841G>A	c.(2839-2841)GAG>GAA	p.E947E	SHANK2_uc010rqn.1_Silent_p.E359E|SHANK2_uc001opz.2_Silent_p.E352E|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	568					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			ACATCCCCTTCTCCCTCATCA	0.577													21	39					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70333646	70333646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70333646C>T	uc001oqc.2	-	21	2830	c.2752G>A	c.(2752-2754)GGG>AGG	p.G918R	SHANK2_uc010rqn.1_Missense_Mutation_p.G330R|SHANK2_uc001opz.2_Missense_Mutation_p.G323R|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	539					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TTAATCGTCCCGTAGACTCTT	0.607													14	23					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70349006	70349006	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:70349006G>A	uc001oqc.2	-	15	2170	c.2092C>T	c.(2092-2094)CAC>TAC	p.H698Y	SHANK2_uc010rqn.1_Missense_Mutation_p.H110Y|SHANK2_uc001opz.2_Missense_Mutation_p.H110Y|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Missense_Mutation_p.H110Y|SHANK2_uc001opy.2_5'Flank|SHANK2_uc010rqo.1_5'Flank	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	319	PDZ.				intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			ACCTGCCTGTGGCCGACTTTG	0.577													22	74					0	0	1	0	0
DHCR7	1717	broad.mit.edu	37	11	71150068	71150068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71150068C>T	uc001oqk.2	-	7	938	c.688G>A	c.(688-690)GGG>AGG	p.G230R	DHCR7_uc001oql.2_Missense_Mutation_p.G230R	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	230					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	AACCACTTCCCGATCCGAGGG	0.473									Smith-Lemli-Opitz_syndrome				21	50					0	0	1	0	0
DHCR7	1717	broad.mit.edu	37	11	71152304	71152304	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71152304C>T	uc001oqk.2	-	6	845	c.595G>A	c.(595-597)GGC>AGC	p.G199S	DHCR7_uc001oql.2_Missense_Mutation_p.G199S	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	199					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	AAGAAGTAGCCCTTGACCATG	0.567									Smith-Lemli-Opitz_syndrome				21	63					0	0	1	0	0
DHCR7	1717	broad.mit.edu	37	11	71153328	71153328	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71153328C>T	uc001oqk.2	-	5	643	c.393G>A	c.(391-393)GAG>GAA	p.E131E	DHCR7_uc001oql.2_Silent_p.E131E	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	131					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	TCACGGCCCCCTCCTGGATGC	0.602									Smith-Lemli-Opitz_syndrome				5	11					0	0	1	0	0
KRTAP5-7	440050	broad.mit.edu	37	11	71238552	71238552	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71238552C>T	uc001oqq.1	+	1	240	c.206C>T	c.(205-207)TCC>TTC	p.S69F		NM_001012503	NP_001012521	Q6L8G8	KRA57_HUMAN	keratin associated protein 5-7	69	7 X 4 AA repeats of C-C-X-P.					keratin filament					0						GGCTGTGGCTCCTGTGGGGGC	0.542													57	254					0	0	1	0	0
KRTAP5-9	3846	broad.mit.edu	37	11	71260054	71260054	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71260054C>T	uc001oqs.1	+	1	589	c.351C>T	c.(349-351)TCC>TCT	p.S117S		NM_005553	NP_005544	P26371	KRA59_HUMAN	keratin associated protein 5-9	117	8 X 4 AA repeats of C-C-X-P.				epidermis development	keratin filament					0						CCTGTTGCTCCTCCTCGGGTC	0.622													61	168					0	0	1	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276907	71276907	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71276907G>A	uc001oqt.1	+	1	299	c.274G>A	c.(274-276)GGG>AGG	p.G92R		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	92	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						GGGCTCCAAGGGGGGCTGTGG	0.682													13	169					0	0	1	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276978	71276978	+	Silent	SNP	C	T	T	rs77786965		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71276978C>T	uc001oqt.1	+	1	370	c.345C>T	c.(343-345)GGC>GGT	p.G115G		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	115	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						GGGGCTGTGGCTCCTGTGGGG	0.652													58	145					0	0	1	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71277022	71277022	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71277022C>T	uc001oqt.1	+	1	414	c.389C>T	c.(388-390)TCC>TTC	p.S130F		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	130	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						TGTGGGGGCTCCAAGGGGGGC	0.493													48	182					0	0	1	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293708	71293708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71293708G>A	uc001oqu.2	-	1	214	c.176C>T	c.(175-177)TCC>TTC	p.S59F		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	59	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						GCCCCCACAGGAGCCACAGCT	0.607													18	261					0	0	1	0	0
IL18BP	10068	broad.mit.edu	37	11	71711488	71711488	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71711488C>T	uc001ore.1	+	4	398	c.120C>T	c.(118-120)GCC>GCT	p.A40A	IL18BP_uc001orf.1_Silent_p.A40A|IL18BP_uc009ysu.1_RNA|IL18BP_uc001org.1_Silent_p.A40A|IL18BP_uc001orh.1_Silent_p.A40A|IL18BP_uc001ori.2_Silent_p.A40A|IL18BP_uc009ysv.1_Silent_p.A40A	NM_001039659	NP_001034748	O95998	I18BP_HUMAN	interleukin 18 binding protein isoform a	40					T-helper 1 type immune response	extracellular region	interleukin-18 binding|receptor antagonist activity				0						CCACAGCTGCCACTGCCTCAG	0.607													35	101					0	0	1	0	0
FOLR3	2352	broad.mit.edu	37	11	71850684	71850684	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71850684C>T	uc001ory.1	+	5	723	c.673C>T	c.(673-675)CCC>TCC	p.P225S	FOLR3_uc001orx.1_Missense_Mutation_p.P183S			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	181					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	GTCCTACTTCCCCACTCCAGC	0.592													18	83					0	0	1	0	0
FOLR3	2352	broad.mit.edu	37	11	71850804	71850804	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71850804G>A	uc001ory.1	+	5	843	c.793G>A	c.(793-795)GAG>AAG	p.E265K	FOLR3_uc001orx.1_Missense_Mutation_p.E223K			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	221					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	CAACCCCAATGAGGAGGTGGC	0.572													18	42					0	0	1	0	0
FOLR1	2348	broad.mit.edu	37	11	71903228	71903228	+	Missense_Mutation	SNP	G	A	A	rs145380453		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71903228G>A	uc001orz.1	+	3	149	c.11G>A	c.(10-12)CGG>CAG	p.R4Q	FOLR1_uc001osa.1_Missense_Mutation_p.R4Q|FOLR1_uc001osb.1_Missense_Mutation_p.R4Q|FOLR1_uc001osc.1_Missense_Mutation_p.R4Q|FOLR1_uc001osd.1_Missense_Mutation_p.R4Q	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	4					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						ATGGCTCAGCGGATGACAACA	0.577													25	69					0	0	1	0	0
FOLR1	2348	broad.mit.edu	37	11	71906994	71906994	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71906994C>T	uc001orz.1	+	6	685	c.547C>T	c.(547-549)CCC>TCC	p.P183S	FOLR1_uc001osa.1_Missense_Mutation_p.P183S|FOLR1_uc001osb.1_Missense_Mutation_p.P183S|FOLR1_uc001osc.1_Missense_Mutation_p.P183S|FOLR1_uc001osd.1_Missense_Mutation_p.P183S	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	183					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						TTTCTACTTCCCCACACCCAC	0.547													10	113					0	0	1	0	0
FOLR1	2348	broad.mit.edu	37	11	71907116	71907116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71907116G>A	uc001orz.1	+	6	807	c.669G>A	c.(667-669)GAG>GAA	p.E223E	FOLR1_uc001osa.1_Silent_p.E223E|FOLR1_uc001osb.1_Silent_p.E223E|FOLR1_uc001osc.1_Silent_p.E223E|FOLR1_uc001osd.1_Silent_p.E223E	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	223					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						ACCCCAATGAGGAGGTGGCGA	0.607													13	69					0	0	1	0	0
FOLR1	2348	broad.mit.edu	37	11	71907125	71907125	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71907125G>A	uc001orz.1	+	6	816	c.678G>A	c.(676-678)GCG>GCA	p.A226A	FOLR1_uc001osa.1_Silent_p.A226A|FOLR1_uc001osb.1_Silent_p.A226A|FOLR1_uc001osc.1_Silent_p.A226A|FOLR1_uc001osd.1_Silent_p.A226A	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	226					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						AGGAGGTGGCGAGGTTCTATG	0.627													26	52					0	0	1	0	0
INPPL1	3636	broad.mit.edu	37	11	71940997	71940997	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71940997C>T	uc001osf.2	+	8	1020	c.873C>T	c.(871-873)TCC>TCT	p.S291S	INPPL1_uc001osg.2_Silent_p.S49S	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	291					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						ACATGAGCTCCACAGCACCCC	0.642													9	55					0	0	1	0	0
INPPL1	3636	broad.mit.edu	37	11	71942074	71942074	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:71942074C>T	uc001osf.2	+	12	1485	c.1338C>T	c.(1336-1338)TTC>TTT	p.F446F	INPPL1_uc001osg.2_Silent_p.F204F	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	446					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CATCCTGGTTCACATCGAAGG	0.587													40	155					0	0	1	0	0
CLPB	81570	broad.mit.edu	37	11	72004417	72004417	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72004417G>A	uc001osj.2	-	17	2168	c.2118C>T	c.(2116-2118)ACC>ACT	p.T706T	CLPB_uc010rqx.1_Silent_p.T661T|CLPB_uc010rqy.1_Silent_p.T647T|CLPB_uc001osk.2_Silent_p.T676T|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Silent_p.T505T|CLPB_uc001osi.2_Silent_p.T314T	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	706					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						GCTGCTAGATGGTGTTGCACA	0.592													23	35					0	0	1	0	0
CLPB	81570	broad.mit.edu	37	11	72005678	72005678	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72005678G>A	uc001osj.2	-	14	1686	c.1636C>T	c.(1636-1638)CGC>TGC	p.R546C	CLPB_uc010rqx.1_Missense_Mutation_p.R501C|CLPB_uc010rqy.1_Missense_Mutation_p.R487C|CLPB_uc001osk.2_Missense_Mutation_p.R516C|CLPB_uc009ytg.2_Intron|CLPB_uc010rqz.1_Missense_Mutation_p.R345C|CLPB_uc001osi.2_Missense_Mutation_p.R154C	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	546					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						AGGATAGGGCGAATCACATTC	0.468													48	120					0	0	1	0	0
PDE2A	5138	broad.mit.edu	37	11	72290353	72290353	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72290353G>A	uc010rrc.1	-	27	2574	c.2331C>T	c.(2329-2331)TTC>TTT	p.F777F	PDE2A_uc001oso.2_Silent_p.F756F|PDE2A_uc010rra.1_Silent_p.F770F|PDE2A_uc001osn.2_Silent_p.F521F|PDE2A_uc010rrb.1_Silent_p.F768F|PDE2A_uc010rrd.1_Silent_p.F662F	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	777	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	GGAGGTCCTTGAAGATGCGGA	0.602													43	78					0	0	1	0	0
PDE2A	5138	broad.mit.edu	37	11	72300277	72300277	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72300277C>T	uc010rrc.1	-	12	1124	c.881G>A	c.(880-882)GGA>GAA	p.G294E	PDE2A_uc001oso.2_Missense_Mutation_p.G273E|PDE2A_uc010rra.1_Missense_Mutation_p.G287E|PDE2A_uc001osn.2_Intron|PDE2A_uc010rrb.1_Missense_Mutation_p.G285E|PDE2A_uc010rrd.1_Missense_Mutation_p.G179E	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	294	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	GCCCAGGCATCCTGTCAACTA	0.577													6	17					0	0	1	0	0
PDE2A	5138	broad.mit.edu	37	11	72307659	72307659	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72307659C>T	uc010rrc.1	-	6	710	c.467G>A	c.(466-468)GGG>GAG	p.G156E	PDE2A_uc001oso.2_Missense_Mutation_p.G135E|PDE2A_uc010rra.1_Missense_Mutation_p.G149E|PDE2A_uc001osn.2_Intron|PDE2A_uc010rrb.1_Missense_Mutation_p.G147E|PDE2A_uc010rrd.1_Intron	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	156					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	TGCCACGGCCCCAGCCTCCTT	0.637													9	25					0	0	1	0	0
ARAP1	116985	broad.mit.edu	37	11	72407608	72407608	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72407608G>A	uc001osu.2	-	23	3447	c.3258C>T	c.(3256-3258)ATC>ATT	p.I1086I	ARAP1_uc001osv.2_Silent_p.I1086I|ARAP1_uc001osr.2_Silent_p.I846I|ARAP1_uc001oss.2_Silent_p.I841I|ARAP1_uc009yth.2_Silent_p.I780I|ARAP1_uc010rre.1_Silent_p.I841I	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1086	Rho-GAP.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						ACAGGTGGCTGATAAGGGCCT	0.602													14	46					0	0	1	0	0
ARAP1	116985	broad.mit.edu	37	11	72423500	72423500	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72423500G>A	uc001osu.2	-	6	1050	c.861C>T	c.(859-861)GCC>GCT	p.A287A	ARAP1_uc001osv.2_Silent_p.A287A|ARAP1_uc001osr.2_Silent_p.A47A|ARAP1_uc001oss.2_Silent_p.A42A|ARAP1_uc009yth.2_Silent_p.A42A|ARAP1_uc010rre.1_Silent_p.A42A	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	287					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CGCCCTCATAGGCGTGGTCAT	0.687													58	86					0	0	1	0	0
P2RY2	5029	broad.mit.edu	37	11	72945666	72945666	+	Silent	SNP	C	T	T	rs139591958	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72945666C>T	uc001otj.2	+	3	795	c.462C>T	c.(460-462)GCC>GCT	p.A154A	P2RY2_uc001otk.2_Silent_p.A154A|P2RY2_uc001otl.2_Silent_p.A154A	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	154	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	GCCGGGTGGCCGGGGCCGTGT	0.716													13	68					0	0	1	0	0
P2RY2	5029	broad.mit.edu	37	11	72945668	72945668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72945668G>A	uc001otj.2	+	3	797	c.464G>A	c.(463-465)GGG>GAG	p.G155E	P2RY2_uc001otk.2_Missense_Mutation_p.G155E|P2RY2_uc001otl.2_Missense_Mutation_p.G155E	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	155	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	CGGGTGGCCGGGGCCGTGTGG	0.716													13	69					0	0	1	0	0
P2RY2	5029	broad.mit.edu	37	11	72946126	72946126	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:72946126C>T	uc001otj.2	+	3	1255	c.922C>T	c.(922-924)CTG>TTG	p.L308L	P2RY2_uc001otk.2_Silent_p.L308L|P2RY2_uc001otl.2_Silent_p.L308L	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	308	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	GCTCTACTTCCTGGCTGGGCA	0.662													9	29					0	0	1	0	0
P2RY6	5031	broad.mit.edu	37	11	73007962	73007962	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73007962C>T	uc001otm.2	+	4	804	c.399C>T	c.(397-399)GCC>GCT	p.A133A	P2RY6_uc001otn.2_Silent_p.A133A|P2RY6_uc001oto.2_Silent_p.A133A|P2RY6_uc001otp.2_Silent_p.A133A|P2RY6_uc001otq.2_Silent_p.A133A|P2RY6_uc001otr.2_Silent_p.A133A|P2RY6_uc001ots.2_Silent_p.A133A	NM_176796	NP_789766	Q15077	P2RY6_HUMAN	pyrimidinergic receptor P2Y6	133	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						ACCCGCTGGCCCCCTGGCACA	0.657													8	88					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73662134	73662134	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73662134C>T	uc001ouo.2	+	1	771	c.20C>T	c.(19-21)TCT>TTT	p.S7F		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	7	J.				apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					GATTATTACTCTGTGCTCGGG	0.587													15	26					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73676009	73676009	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73676009G>A	uc001ouo.2	+	4	1172	c.421G>A	c.(421-423)GAA>AAA	p.E141K		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	141					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					CCCCCAAGTCGAACGGGATCT	0.527											OREG0021218	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	63					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73677285	73677285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73677285G>A	uc001ouo.2	+	5	1346	c.595G>A	c.(595-597)GAA>AAA	p.E199K		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	199					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					CTTTGAGAAGGAAGGGGACCA	0.562													6	25					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73679447	73679447	+	Missense_Mutation	SNP	C	T	T	rs146910386	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73679447C>T	uc001ouo.2	+	6	1415	c.664C>T	c.(664-666)CGC>TGC	p.R222C		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	222					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					GCTACACCCTCGCTTCCGCAG	0.527													27	43					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73679476	73679476	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73679476C>T	uc001ouo.2	+	6	1444	c.693C>T	c.(691-693)TTC>TTT	p.F231F		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	231					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					ACAACCTCTTCTTCGTGAACC	0.592													16	32					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73681055	73681055	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73681055G>A	uc001ouo.2	+	8	1598	c.847G>A	c.(847-849)GAC>AAC	p.D283N		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	283					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					ATTGCCGGAGGACCCCACTAA	0.552													67	144					0	0	1	0	0
UCP3	7352	broad.mit.edu	37	11	73715533	73715533	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73715533G>A	uc001our.2	-	5	994	c.639C>T	c.(637-639)CTC>CTT	p.L213L	UCP3_uc001ous.2_Silent_p.L213L	NM_003356	NP_003347	P55916	UCP3_HUMAN	uncoupling protein 3 isoform UCP3L	213					mitochondrial transport|respiratory electron transport chain|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	binding			pancreas(1)	1	Breast(11;2.08e-05)					CCTCACCAGTGAGCAGGTGGT	0.582													16	56					0	0	1	0	0
C2CD3	26005	broad.mit.edu	37	11	73834126	73834126	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73834126G>A	uc001ouu.2	-	8	1499	c.1272C>T	c.(1270-1272)TCC>TCT	p.S424S	C2CD3_uc001ouv.2_Silent_p.S424S	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	424						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					CAGGAGATGGGGAATCTGGAG	0.428													18	53					0	0	1	0	0
C2CD3	26005	broad.mit.edu	37	11	73844510	73844510	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73844510G>A	uc001ouu.2	-	6	1275	c.1048C>T	c.(1048-1050)CAT>TAT	p.H350Y	C2CD3_uc001ouv.2_Missense_Mutation_p.H350Y	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	350						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					ATAGGAGGATGAACTTGGTCC	0.393													14	56					0	0	1	0	0
P4HA3	283208	broad.mit.edu	37	11	73980758	73980758	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:73980758G>A	uc001ouz.2	-	11	1449	c.1406C>T	c.(1405-1407)TCG>TTG	p.S469L	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.S469L	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	469	Fe2OG dioxygenase.					endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					AGCTTCCACCGAGCTCAGCTA	0.547													23	50					0	0	1	0	0
P4HA3	283208	broad.mit.edu	37	11	74009390	74009390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74009390C>T	uc001ouz.2	-	4	627	c.584G>A	c.(583-585)GGG>GAG	p.G195E	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.G195E	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	195						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					GTAATAATCCCCCATGTCATA	0.458													46	115					0	0	1	0	0
KCNE3	10008	broad.mit.edu	37	11	74168606	74168606	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74168606C>T	uc001ovc.2	-	3	350	c.3G>A	c.(1-3)ATG>ATA	p.M1I	KCNE3_uc001ovd.2_Missense_Mutation_p.M1I	NM_005472	NP_005463	Q9Y6H6	KCNE3_HUMAN	potassium voltage-gated channel, Isk-related	1						integral to membrane	voltage-gated potassium channel activity			ovary(1)	1	Breast(11;2.86e-06)					TGGTAGTCTCCATAGCAACAG	0.542													19	64					0	0	1	0	0
CHRDL2	25884	broad.mit.edu	37	11	74429805	74429805	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74429805G>A	uc001ovi.2	-	2	408	c.155C>T	c.(154-156)CCA>CTA	p.P52L	CHRDL2_uc001ovg.2_5'UTR|CHRDL2_uc001ovh.2_Missense_Mutation_p.P52L|CHRDL2_uc001ovk.1_Missense_Mutation_p.P52L			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	52	VWFC 1.				cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					CAGGCCTTGTGGCTCCAAGTA	0.577													8	25					0	0	1	0	0
CHRDL2	25884	broad.mit.edu	37	11	74429817	74429817	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74429817G>A	uc001ovi.2	-	2	396	c.143C>T	c.(142-144)CCC>CTC	p.P48L	CHRDL2_uc001ovg.2_5'UTR|CHRDL2_uc001ovh.2_Missense_Mutation_p.P48L|CHRDL2_uc001ovk.1_Missense_Mutation_p.P48L			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	48	VWFC 1.				cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					CTCCAAGTAGGGGTGCCAGCT	0.587													7	25					0	0	1	0	0
RNF169	254225	broad.mit.edu	37	11	74500681	74500681	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74500681C>T	uc001ovl.3	+	2	526	c.513C>T	c.(511-513)TTC>TTT	p.F171F		NM_001098638	NP_001092108	Q8NCN4	RN169_HUMAN	ring finger protein 169	171							zinc ion binding			ovary(1)	1						ACTTTATATTCAGAGCACCAA	0.343													11	137					0	0	1	0	0
XRRA1	143570	broad.mit.edu	37	11	74559185	74559185	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74559185C>T	uc009yub.2	-	15	2011	c.1679G>A	c.(1678-1680)AGC>AAC	p.S560N	XRRA1_uc001ovm.2_RNA|XRRA1_uc001ovn.2_Missense_Mutation_p.S183N|XRRA1_uc001ovo.2_Missense_Mutation_p.S168N|XRRA1_uc001ovq.3_Missense_Mutation_p.S473N|XRRA1_uc001ovp.3_Missense_Mutation_p.S285N|XRRA1_uc001ovr.2_Missense_Mutation_p.S183N|XRRA1_uc001ovs.1_Missense_Mutation_p.S162N	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	560					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						GGACTCTGTGCTCTTGGAGTC	0.577													7	29					0	0	1	0	0
OR2AT4	341152	broad.mit.edu	37	11	74800531	74800531	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74800531G>A	uc010rro.1	-	1	228	c.228C>T	c.(226-228)ATC>ATT	p.I76I		NM_001005285	NP_001005285	A6NND4	O2AT4_HUMAN	olfactory receptor, family 2, subfamily AT,	76	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGGTGAAAAGGATGTCCAAGG	0.527													16	43					0	0	1	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74880393	74880394	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74880393_74880394CT>TC	uc001owb.2	+	5	1011_1012	c.624_625CT>TC	c.(622-627)CCCTTT>CCTCTT	p.F209L	SLCO2B1_uc010rrq.1_Intron|SLCO2B1_uc010rrr.1_Missense_Mutation_p.F65L|SLCO2B1_uc010rrs.1_Missense_Mutation_p.F93L|SLCO2B1_uc001owc.2_Intron|SLCO2B1_uc001owd.2_Missense_Mutation_p.F187L	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	209	Helical; Name=4; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	CCATTCAGCCCTTTGGCATCTC	0.599													21	78					0	0	1	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74883533	74883533	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74883533C>T	uc001owb.2	+	7	1278	c.891C>T	c.(889-891)TTC>TTT	p.F297F	SLCO2B1_uc010rrq.1_Silent_p.F42F|SLCO2B1_uc010rrr.1_Silent_p.F153F|SLCO2B1_uc010rrs.1_Silent_p.F181F|SLCO2B1_uc001owc.2_Silent_p.F70F|SLCO2B1_uc001owd.2_Silent_p.F275F	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	297	Helical; Name=6; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	ACTTCTTCTTCCCCAAGGAAA	0.577													39	78					0	0	1	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74904519	74904519	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:74904519C>T	uc001owb.2	+	9	1719	c.1332C>T	c.(1330-1332)GCC>GCT	p.A444A	SLCO2B1_uc010rrq.1_Silent_p.A189A|SLCO2B1_uc010rrr.1_Silent_p.A300A|SLCO2B1_uc010rrs.1_Silent_p.A328A|SLCO2B1_uc001owc.2_Silent_p.A217A|SLCO2B1_uc001owd.2_Silent_p.A422A	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	444	Helical; Name=9; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	GATGCGGTGCCCTTTGCCTGC	0.632													12	41					0	0	1	0	0
MAP6	4135	broad.mit.edu	37	11	75319244	75319244	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:75319244C>T	uc001owu.2	-	2	1094	c.1029G>A	c.(1027-1029)GAG>GAA	p.E343E	MAP6_uc001owv.2_Silent_p.E343E	NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	343						Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					GCTTGCTGGCCTCTCCTTTGA	0.498													10	99					0	0	1	0	0
MOGAT2	80168	broad.mit.edu	37	11	75431059	75431059	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:75431059C>T	uc010rru.1	+	2	114	c.114C>T	c.(112-114)TTC>TTT	p.F38F	MOGAT2_uc001oww.1_Silent_p.F38F|MOGAT2_uc010rrv.1_5'UTR	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	38	Helical; (Potential).				glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					CTGTGGGCTTCATAGCCCTCC	0.597													80	177					0	0	1	0	0
MOGAT2	80168	broad.mit.edu	37	11	75439890	75439890	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:75439890C>T	uc010rru.1	+	5	706	c.706C>T	c.(706-708)CCC>TCC	p.P236S	MOGAT2_uc001oww.1_3'UTR|MOGAT2_uc010rrv.1_Missense_Mutation_p.P154S	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	236					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					TGACCAGATTCCCAACTCTTC	0.532													46	93					0	0	1	0	0
MOGAT2	80168	broad.mit.edu	37	11	75442214	75442214	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:75442214C>T	uc010rru.1	+	6	888	c.888C>T	c.(886-888)CCC>CCT	p.P296P	MOGAT2_uc010rrv.1_Silent_p.P214P	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	296					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					CGCTGCATCCCTCGGAGGAGG	0.577													24	60					0	0	1	0	0
DGAT2	84649	broad.mit.edu	37	11	75508211	75508211	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:75508211C>T	uc001oxa.2	+	6	902	c.643C>T	c.(643-645)CCT>TCT	p.P215S	DGAT2_uc001oxb.2_Missense_Mutation_p.P172S	NM_032564	NP_115953	Q96PD7	DGAT2_HUMAN	diacylglycerol O-acyltransferase 2	215	Cytoplasmic (Potential).				glycerol metabolic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	diacylglycerol O-acyltransferase activity				0	Ovarian(111;0.103)					AGGTATCTGCCCTGTCAGCCG	0.542													47	101					0	0	1	0	0
DGAT2	84649	broad.mit.edu	37	11	75509332	75509332	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:75509332C>T	uc001oxa.2	+	7	1129	c.870C>T	c.(868-870)TTC>TTT	p.F290F	DGAT2_uc001oxb.2_Silent_p.F247F	NM_032564	NP_115953	Q96PD7	DGAT2_HUMAN	diacylglycerol O-acyltransferase 2	290	Cytoplasmic (Potential).				glycerol metabolic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	diacylglycerol O-acyltransferase activity				0	Ovarian(111;0.103)					AGGTGATCTTCGAGGAGGGCT	0.537													69	159					0	0	1	0	0
UVRAG	7405	broad.mit.edu	37	11	75852018	75852018	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:75852018C>T	uc001oxc.2	+	15	1902	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F	UVRAG_uc010rrw.1_Missense_Mutation_p.S453F|UVRAG_uc001oxd.2_Missense_Mutation_p.S182F|UVRAG_uc010rrx.1_Missense_Mutation_p.S182F|UVRAG_uc010rry.1_Missense_Mutation_p.S110F	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	554					DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						TTGGATACCTCCTTGGACTTC	0.502													16	53					0	0	1	0	0
WNT11	7481	broad.mit.edu	37	11	75898246	75898246	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:75898246C>T	uc001oxe.2	-	5	1051	c.928G>A	c.(928-930)GAC>AAC	p.D310N		NM_004626	NP_004617	O96014	WNT11_HUMAN	wingless-type MMTV integration site family,	310					adrenal gland development|anterior/posterior pattern formation|artery morphogenesis|axis specification|bone mineralization|cellular response to retinoic acid|cloacal septation|embryonic skeletal system development|endoderm development|lung-associated mesenchyme development|mesonephric duct development|negative regulation of apoptosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell migration|negative regulation of transcription, DNA-dependent|neuroendocrine cell differentiation|neuron differentiation|osteoblast differentiation|outflow tract morphogenesis|palate development|positive regulation of cell migration|positive regulation of protein kinase C signaling cascade|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor-beta2 production|protein localization at cell surface|protein phosphorylation|tight junction assembly|ureteric bud morphogenesis|ventricular septum morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|protein kinase activator activity|Ras GTPase activator activity|transcription regulatory region DNA binding			lung(1)|skin(1)	2						CACATAAGGTCGCAGCTGTCG	0.607													22	41					0	0	1	0	0
WNT11	7481	broad.mit.edu	37	11	75902850	75902850	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:75902850G>A	uc001oxe.2	-	4	771	c.648C>T	c.(646-648)GGC>GGT	p.G216G	WNT11_uc001oxf.1_Silent_p.G216G	NM_004626	NP_004617	O96014	WNT11_HUMAN	wingless-type MMTV integration site family,	216					adrenal gland development|anterior/posterior pattern formation|artery morphogenesis|axis specification|bone mineralization|cellular response to retinoic acid|cloacal septation|embryonic skeletal system development|endoderm development|lung-associated mesenchyme development|mesonephric duct development|negative regulation of apoptosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell migration|negative regulation of transcription, DNA-dependent|neuroendocrine cell differentiation|neuron differentiation|osteoblast differentiation|outflow tract morphogenesis|palate development|positive regulation of cell migration|positive regulation of protein kinase C signaling cascade|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor-beta2 production|protein localization at cell surface|protein phosphorylation|tight junction assembly|ureteric bud morphogenesis|ventricular septum morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|protein kinase activator activity|Ras GTPase activator activity|transcription regulatory region DNA binding			lung(1)|skin(1)	2						TGGAGCAGGAGCCAGACACCC	0.642													18	51					0	0	1	0	0
C11orf30	56946	broad.mit.edu	37	11	76257129	76257129	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76257129C>T	uc001oxl.2	+	20	3705	c.3562C>T	c.(3562-3564)CCC>TCC	p.P1188S	C11orf30_uc001oxm.2_Missense_Mutation_p.P1090S|C11orf30_uc010rsb.1_Missense_Mutation_p.P1203S|C11orf30_uc010rsc.1_Missense_Mutation_p.P1189S|C11orf30_uc001oxn.2_Missense_Mutation_p.P1189S|C11orf30_uc010rsd.1_Missense_Mutation_p.P1097S|C11orf30_uc010rse.1_Missense_Mutation_p.P435S|C11orf30_uc001oxp.2_Intron	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	1188					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						AGGATCATTACCCTCCACCCA	0.502													26	67					0	0	1	0	0
LRRC32	2615	broad.mit.edu	37	11	76372213	76372213	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76372213C>T	uc001oxq.3	-	3	667	c.424G>A	c.(424-426)GAG>AAG	p.E142K	LRRC32_uc001oxr.3_Missense_Mutation_p.E142K|LRRC32_uc010rsf.1_Missense_Mutation_p.E142K	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	142	Extracellular (Potential).|LRR 4.					integral to plasma membrane					0						AGCAGCCGCTCCAGCAGGCCG	0.687													15	41					0	0	1	0	0
LRRC32	2615	broad.mit.edu	37	11	76372279	76372279	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76372279G>A	uc001oxq.3	-	3	601	c.358C>T	c.(358-360)CTG>TTG	p.L120L	LRRC32_uc001oxr.3_Silent_p.L120L|LRRC32_uc010rsf.1_Silent_p.L120L	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	120	Extracellular (Potential).					integral to plasma membrane					0						AGGGGGCCCAGGCCACCAGCA	0.692													16	41					0	0	1	0	0
TSKU	25987	broad.mit.edu	37	11	76506753	76506753	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76506753C>T	uc001oxt.2	+	2	265	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	31	LRRNT.					extracellular region					0	Ovarian(111;0.112)					TGGAGACCTTCGGCCTTTTCG	0.672													7	61					0	0	1	0	0
TSKU	25987	broad.mit.edu	37	11	76507492	76507492	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76507492C>T	uc001oxt.2	+	2	1004	c.832C>T	c.(832-834)CTG>TTG	p.L278L		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	278						extracellular region					0	Ovarian(111;0.112)					GTTTTCAGGCCTGAGCTCCCT	0.672													18	59					0	0	1	0	0
ACER3	55331	broad.mit.edu	37	11	76709843	76709843	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76709843C>T	uc009yum.1	+	7	579	c.475C>T	c.(475-477)CGA>TGA	p.R159*	ACER3_uc010rsg.1_Nonsense_Mutation_p.R117*|ACER3_uc009yul.1_RNA|ACER3_uc001oxu.2_RNA|ACER3_uc009yun.1_Nonsense_Mutation_p.R117*|ACER3_uc009yuo.1_Nonsense_Mutation_p.R64*|ACER3_uc010rsh.1_Nonsense_Mutation_p.R122*|ACER3_uc010rsi.1_Nonsense_Mutation_p.R64*|ACER3_uc010rsj.1_Nonsense_Mutation_p.R64*	NM_018367	NP_060837	Q9NUN7	ACER3_HUMAN	phytoceramidase, alkaline	159	Helical; (Potential).				ceramide metabolic process|phytosphingosine biosynthetic process|positive regulation of cell proliferation|sphingosine biosynthetic process	integral to endoplasmic reticulum membrane|integral to Golgi membrane	phytoceramidase activity				0						ATTAGTACTTCGATCTATTTA	0.323													9	34					0	0	1	0	0
B3GNT6	192134	broad.mit.edu	37	11	76750727	76750727	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76750727G>A	uc001oxw.2	+	2	220	c.132G>A	c.(130-132)CAG>CAA	p.Q44Q		NM_138706	NP_619651	Q6ZMB0	B3GN6_HUMAN	UDP-GlcNAc:betaGal	44	Lumenal (Potential).				O-glycan processing, core 3	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity|galactosyltransferase activity				0						GGTCCCCGCAGGAGGAGACGC	0.716											OREG0021252	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	25					0	0	1	0	0
B3GNT6	192134	broad.mit.edu	37	11	76751273	76751273	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76751273C>T	uc001oxw.2	+	2	766	c.678C>T	c.(676-678)TTC>TTT	p.F226F		NM_138706	NP_619651	Q6ZMB0	B3GN6_HUMAN	UDP-GlcNAc:betaGal	226	Lumenal (Potential).				O-glycan processing, core 3	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity|galactosyltransferase activity				0						ACGACGTGTTCGTGCACACCG	0.677													7	41					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76868005	76868005	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76868005G>A	uc001oyb.2	+	7	962	c.690G>A	c.(688-690)GCG>GCA	p.A230A	MYO7A_uc010rsl.1_Silent_p.A230A|MYO7A_uc010rsm.1_Silent_p.A219A|MYO7A_uc001oyc.2_Silent_p.A230A	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	230	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						TCGAGGGCGCGAAGATTGAGC	0.582													25	57					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76891507	76891507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76891507G>A	uc001oyb.2	+	22	2946	c.2674G>A	c.(2674-2676)GAG>AAG	p.E892K	MYO7A_uc010rsl.1_Missense_Mutation_p.E892K|MYO7A_uc010rsm.1_Missense_Mutation_p.E881K|MYO7A_uc001oyc.2_Missense_Mutation_p.E892K|MYO7A_uc001oyd.2_Missense_Mutation_p.E232K|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.E103K	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	892	Potential.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GGCCAAGGAGGAGGCCGAGCG	0.612													6	22					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76900393	76900393	+	Missense_Mutation	SNP	G	A	A	rs111033214		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76900393G>A	uc001oyb.2	+	28	3780	c.3508G>A	c.(3508-3510)GAG>AAG	p.E1170K	MYO7A_uc010rsm.1_Missense_Mutation_p.E1159K|MYO7A_uc001oyc.2_Missense_Mutation_p.E1170K|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.E381K	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1170	MyTH4 1.		E -> K (in USH1B).		actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GCCCAGGGACGAGATCTACTG	0.642													7	49					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76900452	76900452	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76900452C>T	uc001oyb.2	+	28	3839	c.3567C>T	c.(3565-3567)GCC>GCT	p.A1189A	MYO7A_uc010rsm.1_Silent_p.A1178A|MYO7A_uc001oyc.2_Silent_p.A1189A|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Silent_p.A400A	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1189	MyTH4 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GCAGCTATGCCCGGGGCTGGA	0.622													29	55					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76900491	76900491	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76900491C>T	uc001oyb.2	+	28	3878	c.3606C>T	c.(3604-3606)TTC>TTT	p.F1202F	MYO7A_uc010rsm.1_Silent_p.F1191F|MYO7A_uc001oyc.2_Silent_p.F1202F|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Silent_p.F413F	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1202	MyTH4 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						TGGGCTGTTTCGCCCCCTCCG	0.607													32	79					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76912528	76912528	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76912528G>A	uc001oyb.2	+	36	5160	c.4888G>A	c.(4888-4890)GGA>AGA	p.G1630R	MYO7A_uc010rsm.1_Missense_Mutation_p.G1581R|MYO7A_uc001oyc.2_Missense_Mutation_p.G1592R|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.G802R|MYO7A_uc001oye.2_5'Flank	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1630	SH3.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						CTTTGCCAAGGGAGACCTCAT	0.597													15	29					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76919504	76919504	+	Silent	SNP	C	T	T	rs111033232		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76919504C>T	uc001oyb.2	+	43	6158	c.5886C>T	c.(5884-5886)TTC>TTT	p.F1962F	MYO7A_uc001oyc.2_Silent_p.F1924F|MYO7A_uc001oye.2_RNA	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1962	FERM 2.		Missing (in USH1B).		actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						ATGACTTCTTCTTTGACTTTG	0.527													3	13					0	0	1	0	0
GDPD4	220032	broad.mit.edu	37	11	76980019	76980019	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76980019C>T	uc001oyf.2	-	8	825	c.574G>A	c.(574-576)GAG>AAG	p.E192K		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	192	Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding			skin(1)	1						CCCAAATTCTCCTTCTCCTGA	0.453													42	126					0	0	1	0	0
GDPD4	220032	broad.mit.edu	37	11	76980987	76980987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76980987C>T	uc001oyf.2	-	7	670	c.419G>A	c.(418-420)AGG>AAG	p.R140K		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	140	Cytoplasmic (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding			skin(1)	1						ATGTGTCATCCTGTATCTTCT	0.333													9	31					0	0	1	0	0
GDPD4	220032	broad.mit.edu	37	11	76990361	76990361	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:76990361G>A	uc001oyf.2	-	3	388	c.137C>T	c.(136-138)TCA>TTA	p.S46L		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	46	Helical; (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding			skin(1)	1						CAACAGCAATGAAGAGTAGGC	0.428													14	36					0	0	1	0	0
RSF1	51773	broad.mit.edu	37	11	77409717	77409717	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:77409717G>A	uc001oyn.2	-	7	2650	c.2530C>T	c.(2530-2532)CGA>TGA	p.R844*	RSF1_uc001oym.2_Nonsense_Mutation_p.R592*	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	844					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			CCAGTCCATCGAACTTTGCCT	0.343													38	154					0	0	1	0	0
INTS4	92105	broad.mit.edu	37	11	77639588	77639588	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:77639588G>A	uc001oys.2	-	11	1199	c.1171C>T	c.(1171-1173)CGT>TGT	p.R391C	INTS4_uc001oyt.2_RNA|INTS4_uc001oyu.1_Missense_Mutation_p.R391C	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	391	HEAT 6.				snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			GCAGCAATACGAACCTCTAGA	0.299													3	15					0	0	1	0	0
INTS4	92105	broad.mit.edu	37	11	77702315	77702316	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:77702315_77702316GG>AA	uc001oys.2	-	2	112_113	c.84_85CC>TT	c.(82-87)CTCCGA>CTTTGA	p.R29*	INTS4_uc001oyt.2_RNA|INTS4_uc001oyu.1_Nonsense_Mutation_p.R29*|INTS4_uc001oyv.1_RNA	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	29					snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			TTTGTTAGTCGGAGTTTCTTAG	0.426													44	97					0	0	1	0	0
KCTD14	65987	broad.mit.edu	37	11	77727683	77727683	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:77727683C>T	uc001oyw.3	-	2	749	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	242						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			AAATGGAATTCGTTTCTTTTG	0.448													21	44					0	0	1	0	0
NDUFC2	4718	broad.mit.edu	37	11	77784157	77784157	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:77784157G>A	uc009yuw.2	-	2	672	c.197C>T	c.(196-198)GCC>GTC	p.A66V		NM_004549	NP_004540	O95298	NDUC2_HUMAN	NADH dehydrogenase (ubiquinone) 1, subcomplex	66	Helical; (Potential).				mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0	all_cancers(14;2.23e-19)|all_epithelial(13;7.49e-22)|Breast(9;6.38e-17)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;2.15e-25)		Carvedilol(DB01136)|NADH(DB00157)	AAAAAAAAAGGCCGTAATATA	0.343													31	101					0	0	1	0	0
ALG8	79053	broad.mit.edu	37	11	77812146	77812146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:77812146G>A	uc001oza.1	-	13	1510	c.1445C>T	c.(1444-1446)TCC>TTC	p.S482F	ALG8_uc001oyz.1_3'UTR|ALG8_uc009yux.1_Missense_Mutation_p.S380F	NM_024079	NP_076984	Q9BVK2	ALG8_HUMAN	dolichyl pyrophosphate Glc1Man9GlcNAc2	482					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	alpha-1,3-mannosyltransferase activity|dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|pancreas(1)	3	all_cancers(14;3.62e-19)|all_epithelial(13;1.27e-21)|Breast(9;8.51e-17)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;9.66e-25)			CACCTTCCAGGAGGTGAAAGG	0.423													28	89					0	0	1	0	0
NARS2	79731	broad.mit.edu	37	11	78147847	78147847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78147847G>A	uc001ozi.2	-	14	1679	c.1303C>T	c.(1303-1305)CGT>TGT	p.R435C	NARS2_uc010rsq.1_Missense_Mutation_p.R208C	NM_024678	NP_078954	Q96I59	SYNM_HUMAN	asparaginyl-tRNA synthetase 2, mitochondrial	435					asparaginyl-tRNA aminoacylation	mitochondrial matrix	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding			ovary(2)	2	all_cancers(14;2.63e-17)|all_epithelial(13;1.85e-19)				L-Asparagine(DB00174)	CCAAATCGACGAAGGTCCAGA	0.358													68	171					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78369177	78369177	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78369177C>T	uc001ozl.3	-	34	8699	c.8236G>A	c.(8236-8238)GAG>AAG	p.E2746K	ODZ4_uc001ozk.3_Missense_Mutation_p.E971K|ODZ4_uc009yvb.1_Intron	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2746	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGGTACTGCTCGACAGAGATC	0.597													85	210					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78369603	78369603	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78369603G>A	uc001ozl.3	-	34	8273	c.7810C>T	c.(7810-7812)CTA>TTA	p.L2604L	ODZ4_uc001ozk.3_Silent_p.L829L|ODZ4_uc009yvb.1_Intron	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2604	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AGGTTCTCTAGGTAGTGGGCA	0.542													12	28					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78380231	78380231	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78380231C>T	uc001ozl.3	-	32	7622	c.7159G>A	c.(7159-7161)GAG>AAG	p.E2387K	ODZ4_uc001ozk.3_Missense_Mutation_p.E612K|ODZ4_uc009yvb.1_Missense_Mutation_p.E971K	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2387	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATGTAGATCTCCCCATAGGCT	0.483													4	32					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78380676	78380676	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78380676C>T	uc001ozl.3	-	32	7177	c.6714G>A	c.(6712-6714)CGG>CGA	p.R2238R	ODZ4_uc001ozk.3_Silent_p.R463R|ODZ4_uc009yvb.1_Silent_p.R822R	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2238	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGATGTCATACCGTAGTGGTG	0.557													62	109					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78383099	78383099	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78383099C>T	uc001ozl.3	-	31	6235	c.5772G>A	c.(5770-5772)TGG>TGA	p.W1924*	ODZ4_uc001ozk.3_Nonsense_Mutation_p.W149*|ODZ4_uc009yvb.1_Nonsense_Mutation_p.W508*	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1924	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATGTGTAGCTCCATGTCTTCC	0.547													8	23					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78413252	78413252	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78413252G>A	uc001ozl.3	-	28	4869	c.4406C>T	c.(4405-4407)TCA>TTA	p.S1469L	ODZ4_uc009yvb.1_Missense_Mutation_p.S53L	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1469	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AGCGGTGGCTGACTCCAGGGT	0.567													10	23					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78433820	78433820	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78433820G>A	uc001ozl.3	-	24	4156	c.3693C>T	c.(3691-3693)GCC>GCT	p.A1231A		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1231	Extracellular (Potential).|NHL 1.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGGCCACTGGGGCCAGGAGCT	0.577													11	90					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78440509	78440509	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78440509G>A	uc001ozl.3	-	22	3781	c.3318C>T	c.(3316-3318)TTC>TTT	p.F1106F		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1106	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGGCTGCAGCGAACCACTTCC	0.557													6	9					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78440599	78440599	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78440599C>T	uc001ozl.3	-	22	3691	c.3228G>A	c.(3226-3228)AGG>AGA	p.R1076R		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1076	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TGAGGCTGATCCTCAGGACAG	0.582													20	47					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78443370	78443370	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78443370C>T	uc001ozl.3	-	21	3592	c.3129G>A	c.(3127-3129)CCG>CCA	p.P1043P		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1043	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CCTGAATTTCCGGCACAATGG	0.517													16	39					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78516338	78516338	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:78516338G>A	uc001ozl.3	-	15	2641	c.2178C>T	c.(2176-2178)ATC>ATT	p.I726I		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	726	Extracellular (Potential).|EGF-like 6.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TGCATTTACCGATAGAACAGT	0.552													3	16					0	0	1	0	0
MIR708	100126333	broad.mit.edu	37	11	79113073	79113073	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:79113073C>T	hsa-mir-708|MI0005543	-			c.81C>T			ODZ4_uc001ozl.3_Intron																	0						aggtccctgccctctagaagc	0.274													4	17					0	0	1	0	0
C11orf82	220042	broad.mit.edu	37	11	82625885	82625885	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:82625885C>T	uc001ozt.2	+	3	349	c.105C>T	c.(103-105)GTC>GTT	p.V35V	C11orf82_uc010rsr.1_5'UTR|C11orf82_uc010rss.1_5'UTR|C11orf82_uc009yvd.2_Silent_p.V35V	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	35					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						TAATCCTGGTCTCCAAAAGGT	0.393													13	39					0	0	1	0	0
C11orf82	220042	broad.mit.edu	37	11	82643420	82643420	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:82643420C>T	uc001ozt.2	+	6	1284	c.1040C>T	c.(1039-1041)CCC>CTC	p.P347L	C11orf82_uc010rsr.1_Missense_Mutation_p.P46L|C11orf82_uc010rss.1_Missense_Mutation_p.P46L|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	347					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						ATGCGAGAGCCCCTTGAGTCA	0.408													44	150					0	0	1	0	0
C11orf82	220042	broad.mit.edu	37	11	82644405	82644405	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:82644405C>T	uc001ozt.2	+	6	2269	c.2025C>T	c.(2023-2025)GCC>GCT	p.A675A	C11orf82_uc010rsr.1_Silent_p.A374A|C11orf82_uc010rss.1_Silent_p.A374A|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	675					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						GCTATGATGCCTCTGCTGATC	0.348													58	194					0	0	1	0	0
C11orf82	220042	broad.mit.edu	37	11	82644788	82644788	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:82644788G>A	uc001ozt.2	+	6	2652	c.2408G>A	c.(2407-2409)GGT>GAT	p.G803D	C11orf82_uc010rsr.1_Missense_Mutation_p.G502D|C11orf82_uc010rss.1_Missense_Mutation_p.G502D|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	803					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						GATCTTGATGGTAACTATGAA	0.368													18	39					0	0	1	0	0
C11orf82	220042	broad.mit.edu	37	11	82644813	82644813	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:82644813C>T	uc001ozt.2	+	6	2677	c.2433C>T	c.(2431-2433)TTC>TTT	p.F811F	C11orf82_uc010rsr.1_Silent_p.F510F|C11orf82_uc010rss.1_Silent_p.F510F|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	811					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						TAAGGATTTTCCCTGAAAATG	0.368													14	32					0	0	1	0	0
RAB30	27314	broad.mit.edu	37	11	82693265	82693265	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:82693265G>A	uc001ozu.2	-	6	815	c.554C>T	c.(553-555)TCA>TTA	p.S185L	RAB30_uc009yve.2_Missense_Mutation_p.S183L|RAB30_uc010rst.1_Missense_Mutation_p.S183L|RAB30_uc001ozv.2_3'UTR	NM_014488	NP_055303	Q15771	RAB30_HUMAN	RAB30, member RAS oncogene family	185					protein transport|small GTPase mediated signal transduction	Golgi stack|plasma membrane	GTP binding|GTPase activity				0						AGGTAAGGGTGAGGATACATT	0.448													45	93					0	0	1	0	0
PCF11	51585	broad.mit.edu	37	11	82880378	82880378	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:82880378C>T	uc001ozx.3	+	8	3346	c.3001C>T	c.(3001-3003)CAA>TAA	p.Q1001*	PCF11_uc010rsu.1_Nonsense_Mutation_p.Q1132*	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	1001	Gly-rich.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						CCCTTTAGTCCAACAAGGAGG	0.507													16	42					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	83180398	83180398	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:83180398C>T	uc001paj.2	-	20	2453	c.2150G>A	c.(2149-2151)CGA>CAA	p.R717Q	DLG2_uc001pai.2_Missense_Mutation_p.R596Q|DLG2_uc010rsy.1_Missense_Mutation_p.R666Q|DLG2_uc010rsz.1_Missense_Mutation_p.R713Q|DLG2_uc010rta.1_Missense_Mutation_p.R699Q|DLG2_uc001pak.2_Missense_Mutation_p.R822Q|DLG2_uc010rtb.1_Missense_Mutation_p.R684Q|DLG2_uc010rsw.1_Missense_Mutation_p.R181Q|DLG2_uc010rsx.1_Missense_Mutation_p.R194Q	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	717	Guanylate kinase-like.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CTCGTAGTCTCGCTTTGGCCT	0.388													27	121					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	83182714	83182714	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:83182714C>T	uc001paj.2	-	19	2389	c.2086G>A	c.(2086-2088)GAC>AAC	p.D696N	DLG2_uc001pai.2_Missense_Mutation_p.D575N|DLG2_uc010rsy.1_Missense_Mutation_p.D645N|DLG2_uc010rsz.1_Missense_Mutation_p.D692N|DLG2_uc010rta.1_Missense_Mutation_p.D678N|DLG2_uc001pak.2_Missense_Mutation_p.D801N|DLG2_uc010rtb.1_Missense_Mutation_p.D663N|DLG2_uc010rsw.1_Missense_Mutation_p.D160N|DLG2_uc010rsx.1_Missense_Mutation_p.D173N	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	696	Guanylate kinase-like.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				GATATCAAGTCGTCATTGATC	0.428													14	40					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	83182733	83182733	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:83182733C>T	uc001paj.2	-	19	2370	c.2067G>A	c.(2065-2067)ATG>ATA	p.M689I	DLG2_uc001pai.2_Missense_Mutation_p.M568I|DLG2_uc010rsy.1_Missense_Mutation_p.M638I|DLG2_uc010rsz.1_Missense_Mutation_p.M685I|DLG2_uc010rta.1_Missense_Mutation_p.M671I|DLG2_uc001pak.2_Missense_Mutation_p.M794I|DLG2_uc010rtb.1_Missense_Mutation_p.M656I|DLG2_uc010rsw.1_Missense_Mutation_p.M153I|DLG2_uc010rsx.1_Missense_Mutation_p.M166I	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	689	Guanylate kinase-like.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCCGATCCTTCATGGGCCCCA	0.433													23	34					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	83195246	83195246	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:83195246C>T	uc001paj.2	-	17	2207	c.1904G>A	c.(1903-1905)AGC>AAC	p.S635N	DLG2_uc001pai.2_Intron|DLG2_uc010rsy.1_Intron|DLG2_uc010rsz.1_Intron|DLG2_uc010rta.1_Intron|DLG2_uc001pak.2_Missense_Mutation_p.S740N|DLG2_uc010rtb.1_Missense_Mutation_p.S602N|DLG2_uc010rsw.1_Intron|DLG2_uc010rsx.1_Intron	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	635						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				AAAGATGAAGCTCTTTTTACG	0.413													30	97					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	83770408	83770408	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:83770408C>T	uc001paj.2	-	6	857	c.554G>A	c.(553-555)CGA>CAA	p.R185Q	DLG2_uc001pai.2_Missense_Mutation_p.R134Q|DLG2_uc010rsy.1_Missense_Mutation_p.R152Q|DLG2_uc010rsz.1_Missense_Mutation_p.R185Q|DLG2_uc010rta.1_Missense_Mutation_p.R185Q|DLG2_uc001pak.2_Missense_Mutation_p.R290Q|DLG2_uc010rtb.1_Missense_Mutation_p.R152Q|DLG2_uc001pal.1_Missense_Mutation_p.R185Q|DLG2_uc001pam.1_Missense_Mutation_p.R224Q	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	185						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CAAAATAGGTCGTCTTCTACG	0.458													28	116					0	0	1	0	0
SYTL2	54843	broad.mit.edu	37	11	85448657	85448657	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:85448657G>A	uc010rth.1	-	4	708	c.432C>T	c.(430-432)TCC>TCT	p.S144S	SYTL2_uc010rtg.1_Silent_p.S144S|SYTL2_uc010rti.1_Silent_p.S144S|SYTL2_uc010rtj.1_Silent_p.S96S|SYTL2_uc001pbf.3_Silent_p.S144S|SYTL2_uc010rtf.1_Silent_p.S2S	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	144					intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		TGTTTTCCTGGGACATATCAA	0.373													10	49					0	0	1	0	0
CCDC83	220047	broad.mit.edu	37	11	85606413	85606413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:85606413G>A	uc001pbh.1	+	6	1101	c.589G>A	c.(589-591)GAA>AAA	p.E197K	CCDC83_uc001pbg.1_Missense_Mutation_p.E197K|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Missense_Mutation_p.E98K	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	197										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CCAAAAGAAGGAATGGGCCAC	0.284													25	65					0	0	1	0	0
CCDC83	220047	broad.mit.edu	37	11	85627240	85627240	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:85627240G>A	uc001pbh.1	+	10	1556	c.1044G>A	c.(1042-1044)ATG>ATA	p.M348I	CCDC83_uc001pbg.1_Missense_Mutation_p.M379I|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Missense_Mutation_p.M248I	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	348										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				ACACTGATATGAAGTACTTAC	0.348													63	112					0	0	1	0	0
EED	8726	broad.mit.edu	37	11	85967484	85967484	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:85967484C>T	uc001pbp.2	+	5	939	c.482C>T	c.(481-483)CCT>CTT	p.P161L	EED_uc010rtm.1_Missense_Mutation_p.P161L|EED_uc001pbq.2_Missense_Mutation_p.P161L|EED_uc001pbr.2_Missense_Mutation_p.P161L|EED_uc001pbs.2_Missense_Mutation_p.P161L|EED_uc010rtn.1_5'Flank	NM_003797	NP_003788	O75530	EED_HUMAN	embryonic ectoderm development isoform a	161	Interaction with EZH2 (By similarity).|WD 2.|Required for interaction with the matrix protein MA of HIV-1.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	histone methyltransferase activity|identical protein binding			skin(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;7.24e-07)|all_hematologic(158;0.00092)				ACGAGCCATCCTCTGCTGGCT	0.358													10	74					0	0	1	0	0
EED	8726	broad.mit.edu	37	11	85989562	85989562	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:85989562C>T	uc001pbp.2	+	12	1778	c.1321C>T	c.(1321-1323)CGA>TGA	p.R441*	EED_uc001pbq.2_3'UTR|EED_uc001pbr.2_Nonsense_Mutation_p.R466*|EED_uc001pbs.2_Nonsense_Mutation_p.R361*	NM_003797	NP_003788	O75530	EED_HUMAN	embryonic ectoderm development isoform a	441	Interaction with EZH2 (By similarity).|Required for interaction with the matrix protein MA of HIV-1.|WD 7.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	histone methyltransferase activity|identical protein binding			skin(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;7.24e-07)|all_hematologic(158;0.00092)				GGATCGACTTCGATAAAATAC	0.383													20	55					0	0	1	0	0
CCDC81	60494	broad.mit.edu	37	11	86123537	86123537	+	Missense_Mutation	SNP	G	A	A	rs148008941	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:86123537G>A	uc001pbx.1	+	11	1755	c.1327G>A	c.(1327-1329)GAA>AAA	p.E443K	CCDC81_uc001pbw.1_Missense_Mutation_p.E353K|CCDC81_uc010rtq.1_Missense_Mutation_p.E226K|CCDC81_uc001pby.1_Missense_Mutation_p.E178K	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	443	Potential.									skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				ACAGGAAAACGAAATAAAGCA	0.453													36	65					0	0	1	0	0
CCDC81	60494	broad.mit.edu	37	11	86126188	86126188	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:86126188C>T	uc001pbx.1	+	13	1952	c.1524C>T	c.(1522-1524)CCC>CCT	p.P508P	CCDC81_uc001pbw.1_Silent_p.P418P|CCDC81_uc010rtq.1_Silent_p.P291P|CCDC81_uc001pby.1_Silent_p.P243P	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	508										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				CCTCTGAGCCCATCTTTGGTA	0.458													21	81					0	0	1	0	0
ME3	10873	broad.mit.edu	37	11	86209145	86209145	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:86209145C>T	uc001pbz.2	-	5	819	c.565G>A	c.(565-567)GAG>AAG	p.E189K	ME3_uc001pca.2_Missense_Mutation_p.E189K|ME3_uc009yvk.2_Missense_Mutation_p.E189K|ME3_uc010rtr.1_RNA	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	189					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	AGGATGCGCTCCCCATCAGTC	0.627													31	85					0	0	1	0	0
ME3	10873	broad.mit.edu	37	11	86382822	86382822	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:86382822C>T	uc001pbz.2	-	1	419	c.165G>A	c.(163-165)AGG>AGA	p.R55R	ME3_uc001pca.2_Silent_p.R55R|ME3_uc009yvk.2_Silent_p.R55R|ME3_uc010rtr.1_RNA	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	55					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	GATGAGGGTTCCTGGTGACAT	0.682													23	50					0	0	1	0	0
RAB38	23682	broad.mit.edu	37	11	87847224	87847224	+	Missense_Mutation	SNP	G	A	A	rs35475962		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:87847224G>A	uc001pcj.1	-	3	615	c.568C>T	c.(568-570)CCG>TCG	p.P190S		NM_022337	NP_071732	P57729	RAB38_HUMAN	RAB38	190					protein transport|small GTPase mediated signal transduction	melanosome|plasma membrane	GTP binding|GTPase activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ACGACGTCCGGCTCAATAGAC	0.468													41	142					0	0	1	0	0
CTSC	1075	broad.mit.edu	37	11	88027354	88027354	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88027354A>G	uc001pck.3	-	7	1313	c.1212T>C	c.(1210-1212)AAT>AAC	p.N404N	CTSC_uc001pcl.3_Silent_p.N256N	NM_001814	NP_001805	P53634	CATC_HUMAN	cathepsin C isoform a preproprotein	404					immune response	lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GAACAGCATGATTAGTCAGCT	0.488													16	57					0	0	1	0	0
CTSC	1075	broad.mit.edu	37	11	88027614	88027614	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88027614C>T	uc001pck.3	-	7	1053	c.952G>A	c.(952-954)GAA>AAA	p.E318K	CTSC_uc001pcl.3_Missense_Mutation_p.E170K	NM_001814	NP_001805	P53634	CATC_HUMAN	cathepsin C isoform a preproprotein	318					immune response	lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CAAGCTTCTTCCACCAGCCCA	0.463													16	77					0	0	1	0	0
CTSC	1075	broad.mit.edu	37	11	88027630	88027630	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88027630T>C	uc001pck.3	-	7	1037	c.936A>G	c.(934-936)CAA>CAG	p.Q312Q	CTSC_uc001pcl.3_Silent_p.Q164Q	NM_001814	NP_001805	P53634	CATC_HUMAN	cathepsin C isoform a preproprotein	312			Q -> R (in PLS).		immune response	lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GCCCAAAATCTTGGGCGTACT	0.458													22	60					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88241775	88241775	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88241775G>A	uc001pcq.2	-	9	3824	c.3624C>T	c.(3622-3624)AGC>AGT	p.S1208S	GRM5_uc009yvm.2_Silent_p.S1176S	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	1208	Cytoplasmic (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	ACGACGAGGAGCTCTGAGTGT	0.587													16	42					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88258513	88258513	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88258513C>T	uc001pcq.2	-	8	2890	c.2690G>A	c.(2689-2691)GGG>GAG	p.G897E	GRM5_uc009yvm.2_Intron	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	897	Cytoplasmic (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	CCCCATACTCCCTTTGGGGGT	0.483													116	304					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88300558	88300558	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88300558G>A	uc001pcq.2	-	7	2493	c.2293C>T	c.(2293-2295)CCA>TCA	p.P765S	GRM5_uc009yvm.2_Missense_Mutation_p.P765S	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	765	Cytoplasmic (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	AAGTTAGCTGGAACATTTCTG	0.438													52	137					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88300912	88300912	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88300912G>A	uc001pcq.2	-	7	2139	c.1939C>T	c.(1939-1941)CAG>TAG	p.Q647*	GRM5_uc009yvm.2_Nonsense_Mutation_p.Q647*	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	647	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	CCAATTCTCTGAAGGTAGCAG	0.493													5	33					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88583166	88583166	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88583166C>T	uc001pcq.2	-	2	1019	c.819G>A	c.(817-819)GTG>GTA	p.V273V	GRM5_uc009yvm.2_Silent_p.V273V	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	273	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	AGCAGGCCACCACCCGGGCCT	0.552													28	62					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88780705	88780705	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88780705G>A	uc001pcq.2	-	1	536	c.336C>T	c.(334-336)TTC>TTT	p.F112F	GRM5_uc009yvm.2_Silent_p.F112F|GRM5_uc009yvn.1_Silent_p.F112F	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	112	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	AATCTCTTATGAACTCAATGC	0.527													28	36					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88780987	88780987	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:88780987C>T	uc001pcq.2	-	1	254	c.54G>A	c.(52-54)GGG>GGA	p.G18G	GRM5_uc009yvm.2_Silent_p.G18G|GRM5_uc009yvn.1_Silent_p.G18G	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	18					activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	ACTGTGCACTCCCACGGACAT	0.468													31	70					0	0	1	0	0
TYR	7299	broad.mit.edu	37	11	89028445	89028445	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:89028445C>T	uc001pcs.2	+	5	1583	c.1501C>T	c.(1501-1503)CGT>TGT	p.R501C		NM_000372	NP_000363	P14679	TYRO_HUMAN	tyrosinase precursor	501	Cytoplasmic (Potential).				eye pigment biosynthetic process|melanin biosynthetic process from tyrosine|visual perception	Golgi-associated vesicle|integral to membrane|lysosome|melanosome membrane|perinuclear region of cytoplasm	copper ion binding|monophenol monooxygenase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.0033)			Azelaic Acid(DB00548)|Mimosine(DB01055)|NADH(DB00157)	CTTGCTGTGTCGTCACAAGAG	0.537									Oculocutaneous_Albinism				19	46					0	0	1	0	0
NOX4	50507	broad.mit.edu	37	11	89166025	89166025	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:89166025C>T	uc001pct.2	-	7	715	c.476_splice	c.e7-1	p.V159_splice	NOX4_uc009yvr.2_Splice_Site_p.V134_splice|NOX4_uc001pcu.2_Splice_Site_p.V85_splice|NOX4_uc001pcw.2_Intron|NOX4_uc001pcx.2_Intron|NOX4_uc001pcv.2_Splice_Site_p.V159_splice|NOX4_uc009yvo.2_Splice_Site|NOX4_uc010rtu.1_Splice_Site|NOX4_uc009yvp.2_Splice_Site_p.V159_splice|NOX4_uc010rtv.1_Splice_Site_p.V135_splice|NOX4_uc009yvq.2_Splice_Site_p.V135_splice|NOX4_uc009yvs.1_Splice_Site	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a						cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				AGGCCAGGAACTATAAAAATG	0.353													7	36					0	0	1	0	0
TRIM49	57093	broad.mit.edu	37	11	89531449	89531449	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:89531449G>A	uc001pdb.2	-	8	1537	c.1208C>T	c.(1207-1209)CCA>CTA	p.P403L		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	403	B30.2/SPRY.					intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				GGTAGGTTTTGGGATATATTG	0.423													13	115					0	0	1	0	0
TRIM49	57093	broad.mit.edu	37	11	89531571	89531571	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:89531571C>T	uc001pdb.2	-	8	1415	c.1086G>A	c.(1084-1086)CGG>CGA	p.R362R		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	362	B30.2/SPRY.					intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TCTTCTCTTTCCGATACATAT	0.453													42	146					0	0	1	0	0
TRIM49	57093	broad.mit.edu	37	11	89531723	89531723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:89531723C>T	uc001pdb.2	-	8	1263	c.934G>A	c.(934-936)GGA>AGA	p.G312R		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	312	B30.2/SPRY.					intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TGGTCACATCCAATACACATG	0.373													18	59					0	0	1	0	0
TRIM49	57093	broad.mit.edu	37	11	89537460	89537460	+	Missense_Mutation	SNP	C	T	T	rs141552770		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:89537460C>T	uc001pdb.2	-	3	507	c.178G>A	c.(178-180)GAG>AAG	p.E60K		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	60						intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TTTATCTGCTCGGTTGACTTT	0.463													25	97					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92085731	92085731	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92085731G>A	uc001pdj.3	+	1	470	c.453G>A	c.(451-453)ATG>ATA	p.M151I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	151	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTTAGATATGAATGATCTGA	0.403										TCGA Ovarian(4;0.039)			25	46					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92086197	92086197	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92086197G>A	uc001pdj.3	+	1	936	c.919G>A	c.(919-921)GAT>AAT	p.D307N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	307	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGTGGCTGGGGATCCTTTAGA	0.448										TCGA Ovarian(4;0.039)			14	37					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92086445	92086445	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92086445C>T	uc001pdj.3	+	1	1184	c.1167C>T	c.(1165-1167)TCC>TCT	p.S389S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	389	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTGAATTTTCCCCTCCTGGTG	0.403										TCGA Ovarian(4;0.039)			11	20					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92086447	92086447	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92086447C>T	uc001pdj.3	+	1	1186	c.1169C>T	c.(1168-1170)CCT>CTT	p.P390L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	390	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAATTTTCCCCTCCTGGTGTC	0.398										TCGA Ovarian(4;0.039)			11	19					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92086734	92086734	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92086734C>T	uc001pdj.3	+	1	1473	c.1456C>T	c.(1456-1458)CCA>TCA	p.P486S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	486	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGAAAGTGTCCCAGTGGGAAC	0.413										TCGA Ovarian(4;0.039)			6	52					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92087032	92087032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92087032G>A	uc001pdj.3	+	1	1771	c.1754G>A	c.(1753-1755)GGA>GAA	p.G585E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	585	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCTTGCCAGGGAGTTATTTCA	0.428										TCGA Ovarian(4;0.039)			14	29					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92087069	92087069	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92087069C>T	uc001pdj.3	+	1	1808	c.1791C>T	c.(1789-1791)ATC>ATT	p.I597I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	597	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTGGTCACATCACAGCAGTCT	0.393										TCGA Ovarian(4;0.039)			16	32					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92087253	92087253	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92087253G>A	uc001pdj.3	+	1	1992	c.1975G>A	c.(1975-1977)GAG>AAG	p.E659K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	659	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AACTGATGGAGAGAATCTTGC	0.393										TCGA Ovarian(4;0.039)			7	39					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92087396	92087396	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92087396G>A	uc001pdj.3	+	1	2135	c.2118G>A	c.(2116-2118)CTG>CTA	p.L706L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	706	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATGGGAAACTGAATCTGGAAG	0.403										TCGA Ovarian(4;0.039)			34	114					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92087437	92087437	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92087437G>A	uc001pdj.3	+	1	2176	c.2159G>A	c.(2158-2160)AGA>AAA	p.R720K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	720	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCAATTAATAGACAGGGACCA	0.403										TCGA Ovarian(4;0.039)			63	183					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92088157	92088157	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92088157C>T	uc001pdj.3	+	1	2896	c.2879C>T	c.(2878-2880)ACC>ATC	p.T960I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	960	Cadherin 9.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGGCTTGAGACCCATGATCCA	0.468										TCGA Ovarian(4;0.039)			29	76					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92495284	92495284	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92495284G>A	uc001pdj.3	+	4	3949	c.3932G>A	c.(3931-3933)GGG>GAG	p.G1311E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1311	Cadherin 12.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCTAAAACTGGGATGGTTTCT	0.453										TCGA Ovarian(4;0.039)			13	75					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92523184	92523184	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92523184G>A	uc001pdj.3	+	7	4428	c.4411G>A	c.(4411-4413)GAG>AAG	p.E1471K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1471	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GACAATTTCCGAGGATGTGCT	0.423										TCGA Ovarian(4;0.039)			21	99					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92523361	92523361	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92523361G>A	uc001pdj.3	+	7	4605	c.4588G>A	c.(4588-4590)GAC>AAC	p.D1530N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1530	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGAGGCCCAGGACAAGCACAT	0.483										TCGA Ovarian(4;0.039)			42	119					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92531165	92531165	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92531165C>T	uc001pdj.3	+	9	5003	c.4986C>T	c.(4984-4986)ACC>ACT	p.T1662T		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1662	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTCCGTCACCATGTCTGACA	0.448										TCGA Ovarian(4;0.039)			33	58					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92531517	92531517	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92531517G>A	uc001pdj.3	+	9	5355	c.5338G>A	c.(5338-5340)GAG>AAG	p.E1780K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1780	Cadherin 16.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CAGCCTAAGTGAGGCTGCCCC	0.458										TCGA Ovarian(4;0.039)			14	21					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92531727	92531727	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92531727C>T	uc001pdj.3	+	9	5565	c.5548C>T	c.(5548-5550)CAT>TAT	p.H1850Y		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1850	Cadherin 16.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTCCATTTTCATGTGCATGT	0.463										TCGA Ovarian(4;0.039)			8	25					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92532279	92532279	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92532279G>A	uc001pdj.3	+	9	6117	c.6100G>A	c.(6100-6102)GTC>ATC	p.V2034I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2034	Extracellular (Potential).|Cadherin 18.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TACCTCAGGGGTCATTCAGAC	0.463										TCGA Ovarian(4;0.039)			22	51					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92533756	92533756	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92533756G>A	uc001pdj.3	+	9	7594	c.7577G>A	c.(7576-7578)GGG>GAG	p.G2526E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2526	Cadherin 23.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGTGATCCAGGGACTTATGGG	0.493										TCGA Ovarian(4;0.039)			4	19					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92533858	92533858	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92533858G>A	uc001pdj.3	+	9	7696	c.7679G>A	c.(7678-7680)CGG>CAG	p.R2560Q		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2560	Cadherin 23.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGGCTAGACCGGGAAAACCCT	0.473										TCGA Ovarian(4;0.039)			11	27					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92533860	92533860	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92533860G>A	uc001pdj.3	+	9	7698	c.7681G>A	c.(7681-7683)GAA>AAA	p.E2561K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2561	Cadherin 23.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCTAGACCGGGAAAACCCTCT	0.468										TCGA Ovarian(4;0.039)			11	26					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92534203	92534203	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92534203C>T	uc001pdj.3	+	9	8041	c.8024C>T	c.(8023-8025)TCG>TTG	p.S2675L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2675	Cadherin 24.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACAGTGCTTTCGTTCTTTGTC	0.483										TCGA Ovarian(4;0.039)			15	32					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92534248	92534248	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92534248C>T	uc001pdj.3	+	9	8086	c.8069C>T	c.(8068-8070)TCC>TTC	p.S2690F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2690	Cadherin 24.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTAAAGCACTCCCTCATTCCT	0.448										TCGA Ovarian(4;0.039)			14	35					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92543146	92543146	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92543146C>T	uc001pdj.3	+	12	9402	c.9385C>T	c.(9385-9387)CCT>TCT	p.P3129S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3129	Cadherin 28.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGATAACCCCCCTGTGTTTTC	0.542										TCGA Ovarian(4;0.039)			24	57					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92564840	92564840	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92564840C>T	uc001pdj.3	+	13	9551	c.9534C>T	c.(9532-9534)TTC>TTT	p.F3178F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3178	Cadherin 29.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTGGGGTCTTCTCCATTGACA	0.557										TCGA Ovarian(4;0.039)			4	29					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92577409	92577409	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92577409C>T	uc001pdj.3	+	18	10893	c.10876C>T	c.(10876-10878)CGC>TGC	p.R3626C	FAT3_uc001pdi.3_Missense_Mutation_p.R66C	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3626	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAGTGATGGTCGCTTCCAGGT	0.502										TCGA Ovarian(4;0.039)			81	155					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92577687	92577687	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92577687G>A	uc001pdj.3	+	18	11171	c.11154G>A	c.(11152-11154)CTG>CTA	p.L3718L	FAT3_uc001pdi.3_Silent_p.L158L	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3718	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CAGCCTACCTGATCCAGAAGC	0.547										TCGA Ovarian(4;0.039)			3	21					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92590421	92590422	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92590421_92590422CC>TT	uc001pdj.3	+	19	11424_11425	c.11407_11408CC>TT	c.(11407-11409)CCG>TTG	p.P3803L	FAT3_uc001pdi.3_Missense_Mutation_p.P243L	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3803	EGF-like 1.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGTGGAGAAGCCGTGTCCAGGG	0.559										TCGA Ovarian(4;0.039)			24	79					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92600089	92600089	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92600089C>T	uc001pdj.3	+	21	11858	c.11841C>T	c.(11839-11841)TTC>TTT	p.F3947F	FAT3_uc001pdi.3_Silent_p.F387F	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3947	Laminin G-like.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCCTCTACTTCCAGACGCTGA	0.632										TCGA Ovarian(4;0.039)			6	27					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92600189	92600189	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92600189G>A	uc001pdj.3	+	21	11958	c.11941G>A	c.(11941-11943)GGC>AGC	p.G3981S	FAT3_uc001pdi.3_Missense_Mutation_p.G421S	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3981	Laminin G-like.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGTGCTCAGCGGCTTCCAGGG	0.617										TCGA Ovarian(4;0.039)			4	6					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92600263	92600263	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92600263C>T	uc001pdj.3	+	21	12032	c.12015C>T	c.(12013-12015)TTC>TTT	p.F4005F	FAT3_uc001pdi.3_Silent_p.F445F	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4005	Laminin G-like.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCAGCAGCTTCGCGGAGGTGG	0.662										TCGA Ovarian(4;0.039)			3	6					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92600303	92600303	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92600303G>T	uc001pdj.3	+	21	12072	c.12055G>T	c.(12055-12057)GTG>TTG	p.V4019L	FAT3_uc001pdi.3_Missense_Mutation_p.V459L	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4019	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCTGGGCTGCGTGCTCTATCC	0.657										TCGA Ovarian(4;0.039)			3	3					0.115264	0.115272	1	1	0
FAT3	120114	broad.mit.edu	37	11	92616111	92616111	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92616111C>T	uc001pdj.3	+	23	12506	c.12489C>T	c.(12487-12489)TTC>TTT	p.F4163F	FAT3_uc001pdi.3_Silent_p.F603F	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4163	Helical; (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGGTCCTCTTCGTCATCTTCA	0.592										TCGA Ovarian(4;0.039)			12	17					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92616397	92616397	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92616397G>A	uc001pdj.3	+	23	12792	c.12775G>A	c.(12775-12777)GAG>AAG	p.E4259K	FAT3_uc001pdi.3_Missense_Mutation_p.E699K	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4259	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCTGGGAGGCGAGCACCAGGA	0.682										TCGA Ovarian(4;0.039)			50	161					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92624013	92624013	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92624013G>A	uc001pdj.3	+	25	13425	c.13408G>A	c.(13408-13410)GAA>AAA	p.E4470K	FAT3_uc001pdi.3_Missense_Mutation_p.E942K	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4502	Pro-rich.|Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATTCCCCAACGAAACGGATTT	0.592										TCGA Ovarian(4;0.039)			18	41					0	0	1	0	0
MTNR1B	4544	broad.mit.edu	37	11	92702991	92702991	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92702991C>T	uc001pdk.1	+	1	203	c.100C>T	c.(100-102)CCT>TCT	p.P34S		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	34	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	CTCCAGGACCCCTCGACCTCC	0.716													4	7					0	0	1	0	0
MTNR1B	4544	broad.mit.edu	37	11	92714929	92714929	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92714929C>T	uc001pdk.1	+	2	643	c.540C>T	c.(538-540)TCC>TCT	p.S180S		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	180	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	TTGTGGGGTCCCTGGAGTACG	0.612													9	62					0	0	1	0	0
MTNR1B	4544	broad.mit.edu	37	11	92715464	92715464	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:92715464G>A	uc001pdk.1	+	2	1178	c.1075G>A	c.(1075-1077)GCA>ACA	p.A359T		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	359	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	GCAGCACCAGGCAGATGCTCT	0.592													20	42					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93104242	93104242	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93104242A>T	uc001pdq.2	+	7	685	c.585A>T	c.(583-585)AAA>AAT	p.K195N	CCDC67_uc001pdo.1_Missense_Mutation_p.K195N|CCDC67_uc001pdp.2_Missense_Mutation_p.K195N	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	195	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				TAAATGGTAAAAAACAGTGCT	0.328													15	21					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93104332	93104332	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93104332C>T	uc001pdq.2	+	7	775	c.675C>T	c.(673-675)TTC>TTT	p.F225F	CCDC67_uc001pdo.1_Silent_p.F225F|CCDC67_uc001pdp.2_Silent_p.F225F	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	225										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				GAGATGAGTTCATTATTGAAA	0.348													10	19					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93148206	93148206	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93148206C>T	uc001pdq.2	+	13	1664	c.1564C>T	c.(1564-1566)CCC>TCC	p.P522S	CCDC67_uc001pdo.1_Missense_Mutation_p.P522S	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	522										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				TACAATGCCTCCCTTGCCACC	0.408													19	81					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93148220	93148220	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93148220G>A	uc001pdq.2	+	13	1678	c.1578G>A	c.(1576-1578)TCG>TCA	p.S526S	CCDC67_uc001pdo.1_Silent_p.S526S	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	526										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				TGCCACCTTCGACATTTCAAG	0.413													23	84					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93170762	93170762	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93170762G>A	uc001pdq.2	+	14	1792	c.1692G>A	c.(1690-1692)CTG>CTA	p.L564L		NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	564	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				ATTTCCTTCTGGAAGAAGAGA	0.378													20	42					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93797595	93797595	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93797595G>A	uc001pep.2	+	4	884	c.727G>A	c.(727-729)GAA>AAA	p.E243K		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	243	Plastocyanin-like 2.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GTACCTCAATGAAAATATCAA	0.398													16	39					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93819207	93819207	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93819207C>T	uc001pep.2	+	11	2089	c.1932C>T	c.(1930-1932)TCC>TCT	p.S644S	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	644	Plastocyanin-like 4.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				ATAGAGTTTCCTGGCATCTGA	0.468													14	42					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93839179	93839179	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93839179G>A	uc001pep.2	+	17	3085	c.2928G>A	c.(2926-2928)GGG>GGA	p.G976G	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	976	Extracellular (Potential).|Plastocyanin-like 6.				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				AGATTTTTGGGAATCTCCATG	0.333													15	37					0	0	1	0	0
PANX1	24145	broad.mit.edu	37	11	93911540	93911540	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93911540C>T	uc001per.2	+	3	712	c.327C>T	c.(325-327)TTC>TTT	p.F109F	PANX1_uc001peq.2_Silent_p.F109F	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	109	Helical; (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTCAGTTTTTCCCCTACATCC	0.478													15	64					0	0	1	0	0
PANX1	24145	broad.mit.edu	37	11	93912938	93912938	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:93912938C>T	uc001per.2	+	4	1101	c.716C>T	c.(715-717)TCA>TTA	p.S239L	PANX1_uc001peq.2_Missense_Mutation_p.S239L	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	239	Extracellular (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AGCCTCTCCTCACTCTCAGAC	0.468													25	83					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94113833	94113833	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:94113833G>A	uc001pet.2	-	4	926	c.754C>T	c.(754-756)CTC>TTC	p.L252F		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	252	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ATGATGAGGAGGGGCAGGATG	0.567													13	39					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94113920	94113920	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:94113920G>A	uc001pet.2	-	4	839	c.667C>T	c.(667-669)CTC>TTC	p.L223F		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	223	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GGCAGGCAGAGGGAGCGCACA	0.557													13	40					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94129588	94129588	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:94129588C>T	uc001pet.2	-	2	662	c.490G>A	c.(490-492)GCC>ACC	p.A164T		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	164	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ACCGCAATGGCTGTCAGTGTC	0.557													20	50					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94134036	94134036	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:94134036G>A	uc001pet.2	-	1	550	c.378C>T	c.(376-378)CCC>CCT	p.P126P		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	126	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CCAAAGTGAAGGGGGTGTTGA	0.413													12	25					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94134256	94134256	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:94134256T>G	uc001pet.2	-	1	330	c.158A>C	c.(157-159)CAG>CCG	p.Q53P		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	53	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CACAAAGTTCTGCCAGTCGGA	0.612													13	61					0	0	1	0	0
MRE11A	4361	broad.mit.edu	37	11	94180480	94180480	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:94180480G>A	uc001peu.2	-	15	1877	c.1688C>T	c.(1687-1689)TCA>TTA	p.S563L	MRE11A_uc001pev.2_Missense_Mutation_p.S563L|MRE11A_uc009ywj.2_Missense_Mutation_p.S566L	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	563					DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity			breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				GGTTGCTGCTGAGATGCTATC	0.483								Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				73	196					0	0	1	0	0
PIWIL4	143689	broad.mit.edu	37	11	94341758	94341758	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:94341758C>T	uc001pfa.2	+	15	2060	c.1849C>T	c.(1849-1851)CTG>TTG	p.L617L	PIWIL4_uc010rue.1_Intron|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	617	Piwi.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GTTAAAGTCCCTGATGGTGGT	0.403													18	183					0	0	1	0	0
KDM4D	55693	broad.mit.edu	37	11	94731667	94731667	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:94731667C>T	uc001pfe.2	+	3	1963	c.1131C>T	c.(1129-1131)CTC>CTT	p.L377L		NM_018039	NP_060509	Q6B0I6	KDM4D_HUMAN	jumonji domain containing 2D	377					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TGAGACAACTCCCTTCCCACT	0.632													6	44					0	0	1	0	0
FAM76B	143684	broad.mit.edu	37	11	95521709	95521709	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:95521709G>A	uc001pfn.2	-	2	418	c.106C>T	c.(106-108)CCT>TCT	p.P36S	CEP57_uc001pfo.1_5'Flank|CEP57_uc010ruh.1_5'Flank|CEP57_uc010rui.1_5'Flank|CEP57_uc009ywn.1_5'Flank|CEP57_uc001pfp.1_5'Flank|CEP57_uc001pfq.1_5'Flank|CEP57_uc001pfr.1_5'Flank|FAM76B_uc001pfm.2_RNA	NM_144664	NP_653265	Q5HYJ3	FA76B_HUMAN	hypothetical protein LOC143684	36											0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTTACAATAGGATGTGCAATC	0.343													9	59					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99690308	99690308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:99690308C>T	uc001pga.2	+	4	428	c.89C>T	c.(88-90)TCA>TTA	p.S30L	CNTN5_uc009ywv.1_Missense_Mutation_p.S30L|CNTN5_uc001pfz.2_Missense_Mutation_p.S30L|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	30					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTCTCCACTTCATATGCTGCT	0.338													16	145					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99690377	99690377	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:99690377G>A	uc001pga.2	+	4	497	c.158G>A	c.(157-159)CGA>CAA	p.R53Q	CNTN5_uc009ywv.1_Missense_Mutation_p.R53Q|CNTN5_uc001pfz.2_Missense_Mutation_p.R53Q|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	53					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ACCAGACCACGATACAGCAGC	0.423													21	115					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99827539	99827539	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:99827539G>A	uc001pga.2	+	8	1014	c.675G>A	c.(673-675)GAG>GAA	p.E225E	CNTN5_uc009ywv.1_Silent_p.E225E|CNTN5_uc001pfz.2_Silent_p.E225E|CNTN5_uc001pgb.2_Silent_p.E151E	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	225	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TATTTTCAGAGATCATCTATA	0.383													15	42					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99827651	99827651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:99827651G>A	uc001pga.2	+	8	1126	c.787G>A	c.(787-789)GAT>AAT	p.D263N	CNTN5_uc009ywv.1_Missense_Mutation_p.D263N|CNTN5_uc001pfz.2_Missense_Mutation_p.D263N|CNTN5_uc001pgb.2_Missense_Mutation_p.D189N	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	263	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CCAAACATCAGATGTTGGCAG	0.463													19	33					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99932090	99932090	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:99932090G>A	uc001pga.2	+	10	1466	c.1127G>A	c.(1126-1128)GGA>GAA	p.G376E	CNTN5_uc009ywv.1_Missense_Mutation_p.G376E|CNTN5_uc001pfz.2_Missense_Mutation_p.G376E|CNTN5_uc001pgb.2_Missense_Mutation_p.G302E	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	376	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AACTCACGTGGAAAAAATTCC	0.423													31	50					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99944898	99944898	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:99944898G>A	uc001pga.2	+	13	1791	c.1452G>A	c.(1450-1452)CTG>CTA	p.L484L	CNTN5_uc009ywv.1_Silent_p.L484L|CNTN5_uc001pfz.2_Silent_p.L484L|CNTN5_uc001pgb.2_Silent_p.L410L	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	484	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTTTTGCACTGAATCAACTGA	0.373													5	34					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	100126602	100126602	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:100126602C>T	uc001pga.2	+	17	2455	c.2116C>T	c.(2116-2118)CTT>TTT	p.L706F	CNTN5_uc001pfz.2_Missense_Mutation_p.L706F|CNTN5_uc001pgb.2_Missense_Mutation_p.L632F|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	706	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTCCTACAACCTTCAAGCTCG	0.502													28	50					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	100141898	100141898	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:100141898C>T	uc001pga.2	+	18	2578	c.2239C>T	c.(2239-2241)CGA>TGA	p.R747*	CNTN5_uc001pfz.2_Nonsense_Mutation_p.R747*|CNTN5_uc001pgb.2_Nonsense_Mutation_p.R673*|CNTN5_uc010ruk.1_Nonsense_Mutation_p.R18*	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	747	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ATATGAATTTCGAGTGGTAGC	0.458													20	53					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	100169943	100169943	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:100169943C>T	uc001pga.2	+	20	2774	c.2435C>T	c.(2434-2436)GCT>GTT	p.A812V	CNTN5_uc001pfz.2_Missense_Mutation_p.A812V|CNTN5_uc001pgb.2_Missense_Mutation_p.A738V|CNTN5_uc010ruk.1_Missense_Mutation_p.A83V	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	812	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TATATTGTGGCTTTCAGACCC	0.378													12	31					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	100226909	100226909	+	Silent	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:100226909C>G	uc001pga.2	+	25	3600	c.3261C>G	c.(3259-3261)GTC>GTG	p.V1087V	CNTN5_uc001pgb.2_Silent_p.V1013V|CNTN5_uc010ruk.1_Silent_p.V358V	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	1087					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CGTCATCAGTCACCTTGCTCT	0.418													6	20					0	0	1	0	0
TMEM133	83935	broad.mit.edu	37	11	100863137	100863138	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:100863137_100863138CC>TT	uc001pgf.2	+	1	327_328	c.98_99CC>TT	c.(97-99)CCC>CTT	p.P33L		NM_032021	NP_114410	Q9H2Q1	TM133_HUMAN	transmembrane protein 133	33						integral to membrane					0		Acute lymphoblastic leukemia(157;0.000869)|all_hematologic(158;0.014)		BRCA - Breast invasive adenocarcinoma(274;0.0675)		GTTACTTTCCCCTTGACTAAAG	0.426													32	99					0	0	1	0	0
TMEM133	83935	broad.mit.edu	37	11	100863262	100863262	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:100863262C>T	uc001pgf.2	+	1	452	c.223C>T	c.(223-225)CCT>TCT	p.P75S		NM_032021	NP_114410	Q9H2Q1	TM133_HUMAN	transmembrane protein 133	75						integral to membrane					0		Acute lymphoblastic leukemia(157;0.000869)|all_hematologic(158;0.014)		BRCA - Breast invasive adenocarcinoma(274;0.0675)		CATTCTGTGTCCTGCCTGTCT	0.378													41	186					0	0	1	0	0
PGR	5241	broad.mit.edu	37	11	100933186	100933186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:100933186G>A	uc001pgh.2	-	4	2947	c.2204C>T	c.(2203-2205)TCA>TTA	p.S735L	PGR_uc001pgg.2_Missense_Mutation_p.S116L|PGR_uc001pgi.2_Intron|PGR_uc009yww.1_Intron|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	735	Steroid-binding.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	ACCTGGCAATGATTTAGACCA	0.328													28	112					0	0	1	0	0
PGR	5241	broad.mit.edu	37	11	100999520	100999520	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:100999520C>T	uc001pgh.2	-	1	1025	c.282G>A	c.(280-282)AGG>AGA	p.R94R	PGR_uc001pgi.2_Silent_p.R94R|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA|uc010rum.1_5'Flank	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	94	Modulating, Pro-Rich.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	CTCCAGCACCCCTTGTAGCTT	0.632													14	46					0	0	1	0	0
TRPC6	7225	broad.mit.edu	37	11	101344485	101344485	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101344485G>A	uc001pgk.3	-	7	2189	c.1764C>T	c.(1762-1764)CCC>CCT	p.P588P	TRPC6_uc009ywy.2_Silent_p.P472P|TRPC6_uc009ywz.1_Silent_p.P533P	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	588	Extracellular (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		GAGGATCAGAGGGGTCCCACT	0.348													54	98					0	0	1	0	0
TRPC6	7225	broad.mit.edu	37	11	101375429	101375429	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101375429G>A	uc001pgk.3	-	2	696	c.271C>T	c.(271-273)CGC>TGC	p.R91C	TRPC6_uc009ywy.2_Missense_Mutation_p.R91C|TRPC6_uc009ywz.1_Missense_Mutation_p.R91C	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	91	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CTTGTGGAGCGATCACTAAAC	0.507													49	127					0	0	1	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101765653	101765653	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101765653C>T	uc001pgl.2	-	8	1400	c.804G>A	c.(802-804)ACG>ACA	p.T268T		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	268	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		TAAAAAATCTCGTTTCATCCT	0.313													20	55					0	0	1	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101765751	101765751	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101765751G>A	uc001pgl.2	-	8	1302	c.706C>T	c.(706-708)CAG>TAG	p.Q236*		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	236	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		GTATTTTTCTGATTTACTATA	0.284													16	55					0	0	1	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101773360	101773360	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101773360G>A	uc001pgl.2	-	6	1128	c.532C>T	c.(532-534)CCA>TCA	p.P178S		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	178	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		ACCTCAAATGGGTAGCTAGAT	0.323													30	68					0	0	1	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101776545	101776545	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101776545C>T	uc001pgl.2	-	4	871	c.275G>A	c.(274-276)AGA>AAA	p.R92K		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	92					signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		TTTGGTACTTCTTGTGTAGGA	0.274													13	46					0	0	1	0	0
KIAA1377	57562	broad.mit.edu	37	11	101815074	101815074	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101815074G>A	uc001pgm.2	+	3	597	c.327G>A	c.(325-327)CAG>CAA	p.Q109Q	KIAA1377_uc001pgn.2_Silent_p.Q65Q|KIAA1377_uc009yxa.1_5'UTR	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	109	Potential.						protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AAAGAAAACAGAAGTTTGAAG	0.358													24	58					0	0	1	0	0
KIAA1377	57562	broad.mit.edu	37	11	101818765	101818765	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101818765C>T	uc001pgm.2	+	4	668	c.398C>T	c.(397-399)TCC>TTC	p.S133F	KIAA1377_uc001pgn.2_Missense_Mutation_p.S89F|KIAA1377_uc009yxa.1_5'UTR	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	133							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		TCTTTAGTTTCCCGAAAACCA	0.328													9	66					0	0	1	0	0
KIAA1377	57562	broad.mit.edu	37	11	101834561	101834561	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101834561C>T	uc001pgm.2	+	6	3065	c.2795C>T	c.(2794-2796)CCC>CTC	p.P932L	KIAA1377_uc001pgn.2_Missense_Mutation_p.P888L|KIAA1377_uc010run.1_Missense_Mutation_p.P733L|KIAA1377_uc009yxa.1_Missense_Mutation_p.P733L	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	932							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		GAATCAGTTCCCTTATGGAAA	0.378													49	114					0	0	1	0	0
KIAA1377	57562	broad.mit.edu	37	11	101868335	101868335	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101868335G>A	uc001pgm.2	+	11	3585	c.3315G>A	c.(3313-3315)AAG>AAA	p.K1105K	KIAA1377_uc001pgn.2_Silent_p.K1061K|KIAA1377_uc010run.1_Silent_p.K906K	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	1105							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		TCCAGGAGAAGAGAGAAGATA	0.428													7	78					0	0	1	0	0
C11orf70	85016	broad.mit.edu	37	11	101951951	101951951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:101951951G>A	uc001pgp.2	+	6	642	c.614G>A	c.(613-615)CGA>CAA	p.R205Q	C11orf70_uc001pgq.2_Missense_Mutation_p.R167Q	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	205										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		TTTAGTGTTCGAAAGAATCCT	0.299													16	59					0	0	1	0	0
BIRC3	330	broad.mit.edu	37	11	102201741	102201741	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102201741G>A	uc001pgx.2	+	7	1315	c.1093G>A	c.(1093-1095)GAA>AAA	p.E365K		NM_182962	NP_892007	Q13489	BIRC3_HUMAN	baculoviral IAP repeat-containing protein 3	365					anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|skin(1)	4	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0146)		TATCCATTTTGAACCTGGAGA	0.328			T	MALT1	MALT								26	55					0	0	1	0	0
BIRC2	329	broad.mit.edu	37	11	102220766	102220766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102220766C>T	uc001pgy.2	+	2	1580	c.181C>T	c.(181-183)CCT>TCT	p.P61S	BIRC2_uc010ruq.1_Missense_Mutation_p.P12S|BIRC2_uc010rur.1_Missense_Mutation_p.P61S	NM_001166	NP_001157	Q13490	BIRC2_HUMAN	baculoviral IAP repeat-containing protein 2	61	BIR 1.				cell surface receptor linked signaling pathway|cellular component disassembly involved in apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	CD40 receptor complex|cytosol|internal side of plasma membrane	protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|Epithelial(9;0.11)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0144)		CGCCGGGGTGCCTGTCTCAGA	0.428													26	124					0	0	1	0	0
BIRC2	329	broad.mit.edu	37	11	102221052	102221052	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102221052T>A	uc001pgy.2	+	2	1866	c.467T>A	c.(466-468)CTT>CAT	p.L156H	BIRC2_uc010ruq.1_Missense_Mutation_p.L107H|BIRC2_uc010rur.1_Missense_Mutation_p.L156H	NM_001166	NP_001157	Q13490	BIRC2_HUMAN	baculoviral IAP repeat-containing protein 2	156					cell surface receptor linked signaling pathway|cellular component disassembly involved in apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	CD40 receptor complex|cytosol|internal side of plasma membrane	protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|Epithelial(9;0.11)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0144)		TACTCCAGCCTTTCTCCAAAC	0.418													32	150					0	0	1	0	0
MMP7	4316	broad.mit.edu	37	11	102398304	102398304	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102398304C>T	uc001phb.2	-	3	482	c.435G>A	c.(433-435)AGG>AGA	p.R145R	MMP7_uc009yxd.2_Silent_p.R145R|MMP7_uc010rus.1_Silent_p.R145R	NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	145					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)		ATACAACTTTCCTGAAATGCA	0.443													43	98					0	0	1	0	0
MMP20	9313	broad.mit.edu	37	11	102464199	102464199	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102464199G>A	uc001phc.2	-	8	1231	c.1218C>T	c.(1216-1218)ACC>ACT	p.T406T		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	406	Hemopexin-like 3.				proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		CAAAGAAAAGGGTCTTCTGTG	0.388													41	54					0	0	1	0	0
MMP20	9313	broad.mit.edu	37	11	102477362	102477362	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102477362G>A	uc001phc.2	-	6	870	c.857C>T	c.(856-858)CCC>CTC	p.P286L		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	286					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		CTTGTGATGGGGGGCATGGGG	0.527													22	61					0	0	1	0	0
MMP20	9313	broad.mit.edu	37	11	102480727	102480727	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102480727C>T	uc001phc.2	-	4	571	c.558G>A	c.(556-558)CGG>CGA	p.R186R		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	186					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		CTAGAGTCCCCCGAGGCCCAT	0.493													17	45					0	0	1	0	0
MMP20	9313	broad.mit.edu	37	11	102495961	102495961	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102495961G>A	uc001phc.2	-	1	103	c.90C>T	c.(88-90)TCC>TCT	p.S30S		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	30					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		AGGTCCTGGGGGAGGCTGCAA	0.532													18	75					0	0	1	0	0
MMP20	9313	broad.mit.edu	37	11	102495982	102495982	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102495982G>A	uc001phc.2	-	1	82	c.69C>T	c.(67-69)GCC>GCT	p.A23A		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	23					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		CTAGGGAGGGGGCTGCAGTGG	0.532													11	73					0	0	1	0	0
MMP20	9313	broad.mit.edu	37	11	102496012	102496012	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102496012G>A	uc001phc.2	-	1	52	c.39C>T	c.(37-39)CTC>CTT	p.L13L		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	13					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		AAGCCATGATGAGGAAGACAG	0.542													9	63					0	0	1	0	0
MMP20	9313	broad.mit.edu	37	11	102496039	102496039	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102496039G>A	uc001phc.2	-	1	25	c.12C>T	c.(10-12)CTC>CTT	p.L4L		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	4					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		CAGATGCAGGGAGCACCTTCA	0.532													15	44					0	0	1	0	0
MMP27	64066	broad.mit.edu	37	11	102567208	102567208	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102567208C>T	uc001phd.1	-	6	819	c.796G>A	c.(796-798)GAA>AAA	p.E266K		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	266					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		TTAGCAGGTTCCTTAGGCAGA	0.418													27	69					0	0	1	0	0
MMP1	4312	broad.mit.edu	37	11	102667464	102667464	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102667464G>A	uc001phi.2	-	4	699	c.556C>T	c.(556-558)CAA>TAA	p.Q186*	uc001phh.1_Intron|MMP1_uc010ruv.1_Nonsense_Mutation_p.Q120*	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	186	Metalloprotease.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		GGGCCTGGTTGAAAAGCATGA	0.418													29	67					0	0	1	0	0
MMP1	4312	broad.mit.edu	37	11	102668758	102668758	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102668758C>T	uc001phi.2	-	1	209	c.66G>A	c.(64-66)GCG>GCA	p.A22A	uc001phh.1_RNA|MMP1_uc010ruv.1_Intron	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	22					blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		TTTCTAGAGTCGCTGGGAAGC	0.443													16	27					0	0	1	0	0
MMP3	4314	broad.mit.edu	37	11	102709863	102709863	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102709863C>T	uc001phj.1	-	7	1112	c.1047G>A	c.(1045-1047)AAG>AAA	p.K349K		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	349	Hemopexin-like 2.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	AAACGAGGTCCTTGCTAGTAA	0.373													52	74					0	0	1	0	0
MMP3	4314	broad.mit.edu	37	11	102709877	102709877	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102709877C>T	uc001phj.1	-	7	1098	c.1033G>A	c.(1033-1035)GAA>AAA	p.E345K		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	345	Hemopexin-like 2.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	CTAGTAACTTCATATGCGGCA	0.388													36	103					0	0	1	0	0
MMP3	4314	broad.mit.edu	37	11	102711167	102711167	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102711167G>A	uc001phj.1	-	5	848	c.783C>T	c.(781-783)TCC>TCT	p.S261S		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	261					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	CACCATAGAGGGACTGAATGC	0.418													35	67					0	0	1	0	0
MMP3	4314	broad.mit.edu	37	11	102711298	102711298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102711298G>A	uc001phj.1	-	5	717	c.652C>T	c.(652-654)CAT>TAT	p.H218Y		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	218		Zinc 2; catalytic.			collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	CCAATTTCATGAGCAGCAACG	0.423													33	80					0	0	1	0	0
MMP3	4314	broad.mit.edu	37	11	102712909	102712909	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102712909C>T	uc001phj.1	-	4	666	c.601G>A	c.(601-603)GAA>AAA	p.E201K		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	201		Calcium 1.|Calcium 3.			collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	GTCCATTGTTCATCATCATCA	0.393													29	60					0	0	1	0	0
MMP3	4314	broad.mit.edu	37	11	102713470	102713470	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102713470G>A	uc001phj.1	-	2	348	c.283C>T	c.(283-285)CCT>TCT	p.P95S		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	95	Cysteine switch (By similarity).				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	CCAACATCAGGAACTCCACAC	0.493													17	38					0	0	1	0	0
MMP3	4314	broad.mit.edu	37	11	102714185	102714185	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102714185C>T	uc001phj.1	-	1	158	c.93G>A	c.(91-93)ATG>ATA	p.M31I		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	31					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	GAACAAGGTTCATGCTGGTGT	0.488													11	27					0	0	1	0	0
MMP12	4321	broad.mit.edu	37	11	102742443	102742443	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102742443C>T	uc001phk.2	-	4	551	c.506G>A	c.(505-507)GGA>GAA	p.G169E		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	169					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	ATGGAAGTCTCCATGAGCTTT	0.443													5	14					0	0	1	0	0
MMP12	4321	broad.mit.edu	37	11	102742658	102742658	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102742658C>T	uc001phk.2	-	3	420	c.375G>A	c.(373-375)ATG>ATA	p.M125I		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	125					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	CCTCACGGTTCATGTCAGGTG	0.388													9	22					0	0	1	0	0
MMP13	4322	broad.mit.edu	37	11	102824912	102824912	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102824912C>T	uc001phl.2	-	4	638	c.610G>A	c.(610-612)GAT>AAT	p.D204N		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	204					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		CAGGTTTCATCATCATCAAAA	0.408													7	53					0	0	1	0	0
MMP13	4322	broad.mit.edu	37	11	102825195	102825195	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102825195C>T	uc001phl.2	-	3	531	c.503G>A	c.(502-504)GGA>GAA	p.G168E		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	168					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		ACCCTTAATTCCAAAAGAGAT	0.303													12	36					0	0	1	0	0
MMP13	4322	broad.mit.edu	37	11	102826412	102826412	+	Missense_Mutation	SNP	G	A	A	rs2276093	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102826412G>A	uc001phl.2	-	1	51	c.23C>T	c.(22-24)GCC>GTC	p.A8V		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	8					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		GAAGAGGAAGGCAGCCAGGAC	0.517													19	75					0	0	1	0	0
DYNC2H1	79659	broad.mit.edu	37	11	102992208	102992208	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:102992208C>T	uc001pho.2	+	10	1612	c.1468C>T	c.(1468-1470)CGC>TGC	p.R490C	DYNC2H1_uc001phn.1_Missense_Mutation_p.R490C|DYNC2H1_uc009yxe.1_Missense_Mutation_p.R490C	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	490	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AGTTTGGGTTCGCCAGTTGGA	0.368													22	61					0	0	1	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103055700	103055700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103055700C>T	uc001pho.2	+	41	6697	c.6553C>T	c.(6553-6555)CAT>TAT	p.H2185Y	DYNC2H1_uc001phn.1_Missense_Mutation_p.H2185Y|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2185					cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TTGCAGAGATCATGACGAATT	0.363													23	67					0	0	1	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103057133	103057133	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103057133C>T	uc001pho.2	+	42	6940	c.6796C>T	c.(6796-6798)CCT>TCT	p.P2266S	DYNC2H1_uc001phn.1_Missense_Mutation_p.P2266S|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2266	AAA 3 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CATTCAGACTCCTGACATGCA	0.428													32	40					0	0	1	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103057146	103057146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103057146G>A	uc001pho.2	+	42	6953	c.6809G>A	c.(6808-6810)CGA>CAA	p.R2270Q	DYNC2H1_uc001phn.1_Missense_Mutation_p.R2270Q|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2270	AAA 3 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GACATGCAACGAGGTCTAGAT	0.408													19	51					0	0	1	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103091352	103091352	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103091352C>T	uc001pho.2	+	57	9091	c.8947C>T	c.(8947-8949)CCT>TCT	p.P2983S	DYNC2H1_uc001phn.1_Missense_Mutation_p.P2983S|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2983	Stalk (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TCTCTTTTAGCCTTTAGTCAA	0.303													38	91					0	0	1	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103173923	103173923	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103173923C>T	uc001pho.2	+	76	11341	c.11197C>T	c.(11197-11199)CCT>TCT	p.P3733S	DYNC2H1_uc001phn.1_Missense_Mutation_p.P3740S|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	3733	AAA 6 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GGGTGCTGATCCTTCTCAGGA	0.413													14	46					0	0	1	0	0
PDGFD	80310	broad.mit.edu	37	11	103866850	103866850	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103866850G>A	uc001phq.2	-	3	825	c.453C>T	c.(451-453)TTC>TTT	p.F151F	PDGFD_uc001php.2_Silent_p.F145F	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	151	CUB.				positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		CATCGGACTTGAATGTGATTT	0.368													8	121					0	0	1	0	0
DDI1	414301	broad.mit.edu	37	11	103907979	103907979	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103907979C>T	uc001phr.2	+	1	672	c.429C>T	c.(427-429)CCC>CCT	p.P143P	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	143					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		TGGGCAGCCCCGCCCTGATCC	0.672													19	42					0	0	1	0	0
DDI1	414301	broad.mit.edu	37	11	103908168	103908168	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103908168G>A	uc001phr.2	+	1	861	c.618G>A	c.(616-618)CTG>CTA	p.L206L	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	206					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		CCGACCCACTGGATCGGGAAG	0.507													21	91					0	0	1	0	0
DDI1	414301	broad.mit.edu	37	11	103908370	103908370	+	Missense_Mutation	SNP	G	A	A	rs145758335		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103908370G>A	uc001phr.2	+	1	1063	c.820G>A	c.(820-822)GAG>AAG	p.E274K	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	274					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		GGCTTGTGCCGAGCGATGTAA	0.517													40	104					0	0	1	0	0
DDI1	414301	broad.mit.edu	37	11	103908686	103908686	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:103908686C>T	uc001phr.2	+	1	1379	c.1136C>T	c.(1135-1137)TCT>TTT	p.S379F	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	379					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		CAAGATGAGTCTTCGGACAAG	0.463													16	57					0	0	1	0	0
CASP4	837	broad.mit.edu	37	11	104817824	104817824	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:104817824C>T	uc001pid.1	-	7	1094	c.1021G>A	c.(1021-1023)GAA>AAA	p.E341K	CASP4_uc001pib.1_Missense_Mutation_p.E285K|CASP4_uc009yxg.1_Missense_Mutation_p.E250K	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	341					apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		CGAAATACTTCCTCTAGGTGG	0.383													44	124					0	0	1	0	0
CASP1	834	broad.mit.edu	37	11	104897581	104897581	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:104897581T>G	uc010rve.1	-	8	1121	c.1104A>C	c.(1102-1104)GAA>GAC	p.E368D	CASP1_uc001pig.2_Missense_Mutation_p.E275D|CASP1_uc001pik.2_Missense_Mutation_p.E331D|CASP1_uc010rvf.1_Missense_Mutation_p.E275D|CASP1_uc010rvg.1_Missense_Mutation_p.E347D|CASP1_uc010rvh.1_Missense_Mutation_p.E227D|CASP1_uc010rvi.1_Missense_Mutation_p.E52D|CASP1_uc001pim.3_Missense_Mutation_p.E368D|CASP1_uc009yxi.2_Missense_Mutation_p.E347D|CASP1_uc010rvj.1_Missense_Mutation_p.E368D|CASP1_uc009yxj.2_Missense_Mutation_p.E213D|CASP1_uc010rvk.1_3'UTR	NM_033292	NP_150634	P29466	CASP1_HUMAN	caspase 1 isoform alpha precursor	368					cellular response to mechanical stimulus|cellular response to organic substance|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis|signal transduction	cytosol	caspase activator activity|cysteine-type endopeptidase activity|protein binding			ovary(2)	2		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000525)|Epithelial(105;0.0128)|all cancers(92;0.0482)	Minocycline(DB01017)|Penicillamine(DB00859)	TGCGGAAAATTTCCTCCACAT	0.408													26	72					0	0	1	0	0
CASP1	834	broad.mit.edu	37	11	104902005	104902005	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:104902005G>A	uc010rve.1	-	4	357	c.340C>T	c.(340-342)CCT>TCT	p.P114S	CASP1_uc001pig.2_Missense_Mutation_p.P21S|CASP1_uc001pik.2_Missense_Mutation_p.P77S|CASP1_uc010rvf.1_Missense_Mutation_p.P21S|CASP1_uc010rvg.1_Missense_Mutation_p.P93S|CASP1_uc010rvh.1_Missense_Mutation_p.P21S|CASP1_uc010rvi.1_Intron|CASP1_uc001pim.3_Missense_Mutation_p.P114S|CASP1_uc009yxi.2_Missense_Mutation_p.P93S|CASP1_uc010rvj.1_Missense_Mutation_p.P114S|CASP1_uc009yxj.2_Intron|CASP1_uc010rvk.1_Missense_Mutation_p.P75S|CASP1_uc010rvl.1_Missense_Mutation_p.P114S	NM_033292	NP_150634	P29466	CASP1_HUMAN	caspase 1 isoform alpha precursor	114					cellular response to mechanical stimulus|cellular response to organic substance|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis|signal transduction	cytosol	caspase activator activity|cysteine-type endopeptidase activity|protein binding			ovary(2)	2		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000525)|Epithelial(105;0.0128)|all cancers(92;0.0482)	Minocycline(DB01017)|Penicillamine(DB00859)	ACTGCCTGAGGAGCTGCAAGA	0.483													11	33					0	0	1	0	0
CARD16	114769	broad.mit.edu	37	11	104912255	104912255	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:104912255G>A	uc001pip.1	-	3	493	c.466C>T	c.(466-468)CTT>TTT	p.L156F	CASP1_uc010rve.1_Intron|CASP1_uc010rvf.1_Intron|CASP1_uc010rvg.1_Intron|CASP1_uc010rvh.1_Intron|CASP1_uc010rvi.1_Intron|CARD16_uc001pio.1_3'UTR	NM_001017534	NP_001017534	Q5EG05	CAR16_HUMAN	caspase-1 dominant-negative inhibitor pseudo-ICE	156					regulation of apoptosis	intracellular	cysteine-type endopeptidase inhibitor activity			skin(1)	1						TTGGTTCTAAGAAAAAGCCAC	0.383													46	88					0	0	1	0	0
GRIA4	2893	broad.mit.edu	37	11	105769081	105769081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:105769081G>A	uc001pix.2	+	7	1259	c.813G>A	c.(811-813)ATG>ATA	p.M271I	GRIA4_uc001piu.1_Missense_Mutation_p.M271I|GRIA4_uc001piw.2_Missense_Mutation_p.M271I|GRIA4_uc009yxk.1_Missense_Mutation_p.M271I	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	271	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	ATACACCTATGGTAATCAAAC	0.353													21	54					0	0	1	0	0
GRIA4	2893	broad.mit.edu	37	11	105774679	105774679	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:105774679G>A	uc001pix.2	+	8	1471	c.1025G>A	c.(1024-1026)GGA>GAA	p.G342E	GRIA4_uc001piu.1_Missense_Mutation_p.G342E|GRIA4_uc001piw.2_Missense_Mutation_p.G342E|GRIA4_uc009yxk.1_Missense_Mutation_p.G342E	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	342	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	TGGGGCCAGGGAATTGACATG	0.408													34	77					0	0	1	0	0
GRIA4	2893	broad.mit.edu	37	11	105797580	105797580	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:105797580C>T	uc001pix.2	+	13	2407	c.1961C>T	c.(1960-1962)CCC>CTC	p.P654L	GRIA4_uc001piw.2_Missense_Mutation_p.P654L	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	654	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	ATGGTCTCTCCCATAGAAAGT	0.418													14	52					0	0	1	0	0
GRIA4	2893	broad.mit.edu	37	11	105842748	105842748	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:105842748G>A	uc001pix.2	+	15	2848	c.2402G>A	c.(2401-2403)GGA>GAA	p.G801E	GRIA4_uc001piw.2_Intron|GRIA4_uc010rvm.1_RNA|GRIA4_uc009yxl.1_Intron	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	801	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	AAGGACTCTGGAAGCAAGGTC	0.458													20	57					0	0	1	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106680917	106680917	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:106680917G>A	uc001pjg.1	-	5	1884	c.1494C>T	c.(1492-1494)TTC>TTT	p.F498F	GUCY1A2_uc010rvo.1_Silent_p.F519F|GUCY1A2_uc009yxn.1_Silent_p.F498F	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	498					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		CATCACCAGGGAAAATAGAAT	0.418													20	77					0	0	1	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106810341	106810341	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:106810341G>A	uc001pjg.1	-	4	1441	c.1051C>T	c.(1051-1053)CGA>TGA	p.R351*	GUCY1A2_uc010rvo.1_Nonsense_Mutation_p.R351*|GUCY1A2_uc009yxn.1_Nonsense_Mutation_p.R351*	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	351					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		GTGTCACATCGAAGCTGCTTC	0.473													21	34					0	0	1	0	0
ELMOD1	55531	broad.mit.edu	37	11	107506466	107506466	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:107506466C>T	uc010rvs.1	+	6	799	c.395C>T	c.(394-396)CCC>CTC	p.P132L	ELMOD1_uc001pjm.2_Missense_Mutation_p.P132L|ELMOD1_uc010rvt.1_Missense_Mutation_p.P126L	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	132					phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		TCTGATAATCCCCAACATGAA	0.348													9	32					0	0	1	0	0
SLC35F2	54733	broad.mit.edu	37	11	107673741	107673741	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:107673741G>A	uc001pjq.2	-	7	1346	c.925C>T	c.(925-927)CTG>TTG	p.L309L	SLC35F2_uc010rvu.1_Silent_p.L161L	NM_017515	NP_059985	Q8IXU6	S35F2_HUMAN	solute carrier family 35, member F2	309	Helical; (Potential).				transport	integral to membrane				central_nervous_system(1)	1		all_cancers(61;9.46e-06)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;0.000111)|all_hematologic(158;0.000315)|all_epithelial(67;0.00197)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)|Epithelial(105;0.000105)|all cancers(92;0.00217)		TAGCCAAACAGAAAGAGTCCA	0.413													22	58					0	0	1	0	0
NPAT	4863	broad.mit.edu	37	11	108032498	108032498	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108032498G>A	uc001pjz.3	-	17	3417	c.3315C>T	c.(3313-3315)TCC>TCT	p.S1105S	NPAT_uc010rvv.1_Silent_p.S161S	NM_002519	NP_002510	Q14207	NPAT_HUMAN	nuclear protein,  ataxia-telangiectasia locus	1105					positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	protein C-terminus binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			ovary(2)	2		all_cancers(61;2.31e-10)|all_epithelial(67;1.11e-06)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;1.05e-05)|Epithelial(105;3.01e-05)|all cancers(92;0.000816)|Colorectal(284;0.116)		GTTTTAAGGTGGAGGACACAT	0.433													26	66					0	0	1	0	0
ATM	472	broad.mit.edu	37	11	108117798	108117798	+	Missense_Mutation	SNP	C	T	T	rs138398778		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108117798C>T	uc001pkb.1	+	8	1394	c.1009C>T	c.(1009-1011)CGT>TGT	p.R337C	ATM_uc009yxr.1_Missense_Mutation_p.R337C	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	337			R -> C (in a colorectal adenocarcinoma sample; somatic mutation).|R -> H (in a colorectal adenocarcinoma sample; somatic mutation).		cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding	p.R337C(2)|p.R337S(2)|p.R337H(1)		haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TTCAGGATTTCGTAATATTGC	0.323			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			16	51					0	0	1	0	0
ATM	472	broad.mit.edu	37	11	108138014	108138014	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108138014C>T	uc001pkb.1	+	17	2968	c.2583C>T	c.(2581-2583)TAC>TAT	p.Y861Y	ATM_uc009yxr.1_Silent_p.Y861Y|ATM_uc009yxs.1_5'Flank	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	861					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TTAACGATTACCCTGATAGTA	0.368			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			22	66					0	0	1	0	0
ATM	472	broad.mit.edu	37	11	108202275	108202275	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108202275C>T	uc001pkb.1	+	51	8005	c.7620C>T	c.(7618-7620)GTC>GTT	p.V2540V	ATM_uc009yxr.1_Silent_p.V2540V|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_RNA|ATM_uc001pke.1_Silent_p.V1192V|ATM_uc001pkg.1_Silent_p.V897V	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2540	FAT.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TTCATGAAGTCCTCAATAATG	0.299			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			19	65					0	0	1	0	0
C11orf65	160140	broad.mit.edu	37	11	108256663	108256664	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108256663_108256664AG>GA	uc001pkh.2	-	8	840_841	c.770_771CT>TC	c.(769-771)TCT>TTC	p.S257F	C11orf65_uc010rvx.1_Missense_Mutation_p.S208F|C11orf65_uc009yxu.1_RNA	NM_152587	NP_689800	Q8NCR3	CK065_HUMAN	hypothetical protein LOC160140	257										ovary(1)	1		all_cancers(61;1.38e-11)|all_epithelial(67;3.16e-07)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;8.21e-06)|BRCA - Breast invasive adenocarcinoma(274;1.01e-05)|all cancers(92;0.000189)|Colorectal(284;0.114)|OV - Ovarian serous cystadenocarcinoma(223;0.144)		AGTTAGCCGAAGAGTTGCTTGT	0.337													17	219					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108380669	108380669	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108380669G>A	uc001pkk.2	-	6	5676	c.5565C>T	c.(5563-5565)CTC>CTT	p.L1855L	EXPH5_uc010rvy.1_Silent_p.L1667L|EXPH5_uc010rvz.1_Silent_p.L1699L|EXPH5_uc010rwa.1_Silent_p.L1779L	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1855					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CACAGGAGGGGAGTTCAGAAA	0.448													15	56					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108380691	108380691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108380691C>T	uc001pkk.2	-	6	5654	c.5543G>A	c.(5542-5544)AGA>AAA	p.R1848K	EXPH5_uc010rvy.1_Missense_Mutation_p.R1660K|EXPH5_uc010rvz.1_Missense_Mutation_p.R1692K|EXPH5_uc010rwa.1_Missense_Mutation_p.R1772K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1848					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		AGATCTGAATCTTCGACTGTA	0.458													22	41					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108382640	108382640	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108382640G>A	uc001pkk.2	-	6	3705	c.3594C>T	c.(3592-3594)TCC>TCT	p.S1198S	EXPH5_uc010rvy.1_Silent_p.S1010S|EXPH5_uc010rvz.1_Silent_p.S1042S|EXPH5_uc010rwa.1_Silent_p.S1122S	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1198					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CACTTCTCCTGGAGGCAGCCA	0.378													59	139					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108383124	108383124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108383124C>T	uc001pkk.2	-	6	3221	c.3110G>A	c.(3109-3111)GGA>GAA	p.G1037E	EXPH5_uc010rvy.1_Missense_Mutation_p.G849E|EXPH5_uc010rvz.1_Missense_Mutation_p.G881E|EXPH5_uc010rwa.1_Missense_Mutation_p.G961E	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1037					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TATTTTACTTCCTGACTGCCT	0.373													29	68					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108383284	108383284	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108383284C>T	uc001pkk.2	-	6	3061	c.2950G>A	c.(2950-2952)GAA>AAA	p.E984K	EXPH5_uc010rvy.1_Missense_Mutation_p.E796K|EXPH5_uc010rvz.1_Missense_Mutation_p.E828K|EXPH5_uc010rwa.1_Missense_Mutation_p.E908K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	984					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CTTAACTTTTCAATACAGGAT	0.378													27	109					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108383741	108383741	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108383741C>T	uc001pkk.2	-	6	2604	c.2493G>A	c.(2491-2493)CAG>CAA	p.Q831Q	EXPH5_uc010rvy.1_Silent_p.Q643Q|EXPH5_uc010rvz.1_Silent_p.Q675Q|EXPH5_uc010rwa.1_Silent_p.Q755Q	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	831					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CAGTTAATTCCTGGTGACAAC	0.388													54	138					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108383934	108383934	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108383934T>A	uc001pkk.2	-	6	2411	c.2300A>T	c.(2299-2301)AAA>ATA	p.K767I	EXPH5_uc010rvy.1_Missense_Mutation_p.K579I|EXPH5_uc010rvz.1_Missense_Mutation_p.K611I|EXPH5_uc010rwa.1_Missense_Mutation_p.K691I	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	767					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		GGGTGACTTTTTTGAACTTAT	0.378													64	144					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108383994	108383994	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108383994G>A	uc001pkk.2	-	6	2351	c.2240C>T	c.(2239-2241)TCC>TTC	p.S747F	EXPH5_uc010rvy.1_Missense_Mutation_p.S559F|EXPH5_uc010rvz.1_Missense_Mutation_p.S591F|EXPH5_uc010rwa.1_Missense_Mutation_p.S671F	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	747					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TGAGTCCTGGGATAAGGGATT	0.423													42	87					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108385508	108385508	+	Silent	SNP	G	A	A	rs116742815	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:108385508G>A	uc001pkk.2	-	6	837	c.726C>T	c.(724-726)TTC>TTT	p.F242F	EXPH5_uc010rvy.1_Silent_p.F54F|EXPH5_uc010rvz.1_Silent_p.F86F|EXPH5_uc010rwa.1_Silent_p.F166F	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	242					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		AAAAGTGACCGAACTGTGTTC	0.383													50	115					0	0	1	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110451248	110451248	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:110451248G>A	uc001pkz.1	-	16	2707	c.2422C>T	c.(2422-2424)CCT>TCT	p.P808S	ARHGAP20_uc001pky.1_Missense_Mutation_p.P785S|ARHGAP20_uc009yyb.1_Missense_Mutation_p.P772S|ARHGAP20_uc001pla.1_Missense_Mutation_p.P772S|ARHGAP20_uc001plb.2_Missense_Mutation_p.P351S	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	808					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		GAGGACATAGGACTATAAGAT	0.458													44	106					0	0	1	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110477348	110477348	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:110477348G>A	uc001pkz.1	-	10	1186	c.901C>T	c.(901-903)CGA>TGA	p.R301*	ARHGAP20_uc001pky.1_Nonsense_Mutation_p.R278*|ARHGAP20_uc009yyb.1_Nonsense_Mutation_p.R265*|ARHGAP20_uc001pla.1_Nonsense_Mutation_p.R265*	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	301					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		TGCATCTCTCGGGGGAGCTGT	0.542													94	200					0	0	1	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110477352	110477352	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:110477352G>A	uc001pkz.1	-	10	1182	c.897C>T	c.(895-897)CTC>CTT	p.L299L	ARHGAP20_uc001pky.1_Silent_p.L276L|ARHGAP20_uc009yyb.1_Silent_p.L263L|ARHGAP20_uc001pla.1_Silent_p.L263L	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	299					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		TCTCTCGGGGGAGCTGTTCCA	0.537													96	194					0	0	1	0	0
C11orf53	341032	broad.mit.edu	37	11	111154921	111154921	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111154921C>T	uc001plc.2	+	3	275	c.128C>T	c.(127-129)CCC>CTC	p.P43L		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	43											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		AAGCCGTTTCCCTGTGAGTCC	0.572													62	175					0	0	1	0	0
C11orf53	341032	broad.mit.edu	37	11	111154973	111154973	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111154973C>T	uc001plc.2	+	3	327	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	60											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		AGCCCTACTTCCCCCAGGAGC	0.662													45	87					0	0	1	0	0
C11orf53	341032	broad.mit.edu	37	11	111154975	111154975	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111154975C>T	uc001plc.2	+	3	329	c.182C>T	c.(181-183)CCC>CTC	p.P61L		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	61											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		CCCTACTTCCCCCAGGAGCCC	0.667													44	86					0	0	1	0	0
C11orf53	341032	broad.mit.edu	37	11	111156379	111156379	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111156379G>A	uc001plc.2	+	4	458	c.311G>A	c.(310-312)AGG>AAG	p.R104K		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	104											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		TCTCCTCAGAGGGACTCATGG	0.587													9	69					0	0	1	0	0
C11orf53	341032	broad.mit.edu	37	11	111156421	111156421	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111156421C>T	uc001plc.2	+	4	500	c.353C>T	c.(352-354)CCT>CTT	p.P118L		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	118											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		CTCAGCCAGCCTGACCCTGTG	0.597													37	60					0	0	1	0	0
POU2AF1	5450	broad.mit.edu	37	11	111229584	111229584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111229584C>T	uc001plg.3	-	2	331	c.76G>A	c.(76-78)GAG>AAG	p.E26K		NM_006235	NP_006226	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	26					humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			kidney(1)	1		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		TTCACTGGCTCCTTCACACGG	0.582			T	BCL6	NHL								10	33					0	0	1	0	0
C11orf88	399949	broad.mit.edu	37	11	111385654	111385654	+	Missense_Mutation	SNP	C	T	T	rs4418847		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111385654C>T	uc001pln.3	+	1	145	c.145C>T	c.(145-147)CCT>TCT	p.P49S	BTG4_uc001plj.2_5'Flank|BTG4_uc001plk.2_5'Flank|C11orf88_uc009yyd.2_Missense_Mutation_p.P49S|C11orf88_uc001plo.1_Missense_Mutation_p.P49S	NM_001100388	NP_001093858	Q6PI97	CK088_HUMAN	hypothetical protein LOC399949 isoform 2	49											0						GATGTATCCCCCTAGCGAATC	0.597											OREG0021329	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	78					0	0	1	0	0
LAYN	143903	broad.mit.edu	37	11	111425979	111425979	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111425979G>A	uc001plr.1	+	6	982	c.646G>A	c.(646-648)GAA>AAA	p.E216K	LAYN_uc001plp.1_Missense_Mutation_p.E208K|LAYN_uc001plq.1_Missense_Mutation_p.E216K|LAYN_uc001pls.1_Missense_Mutation_p.E208K|LAYN_uc010rwg.1_Missense_Mutation_p.E63K|LAYN_uc010rwh.1_Missense_Mutation_p.E64K	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	216	Extracellular (Potential).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		AGAAACACAGGAAGAAGATGC	0.398													18	39					0	0	1	0	0
SIK2	23235	broad.mit.edu	37	11	111572220	111572220	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111572220C>T	uc001plt.2	+	6	766	c.648C>T	c.(646-648)CCC>CCT	p.P216P		NM_015191	NP_056006	Q9H0K1	SIK2_HUMAN	SNF1-like kinase 2	216	Protein kinase.				intracellular protein kinase cascade|regulation of insulin receptor signaling pathway	Golgi apparatus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|skin(1)	3						GAGCTCTGCCCTTTGATGGAC	0.423													20	201					0	0	1	0	0
PPP2R1B	5519	broad.mit.edu	37	11	111626048	111626048	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111626048G>A	uc001plx.1	-	6	898	c.814C>T	c.(814-816)CGC>TGC	p.R272C	PPP2R1B_uc001plw.1_Missense_Mutation_p.R272C|PPP2R1B_uc010rwi.1_Missense_Mutation_p.R208C|PPP2R1B_uc010rwj.1_Missense_Mutation_p.R111C|PPP2R1B_uc010rwk.1_Missense_Mutation_p.R272C|PPP2R1B_uc010rwl.1_Missense_Mutation_p.R145C	NM_002716	NP_002707	P30154	2AAB_HUMAN	beta isoform of regulatory subunit A, protein	272	HEAT 7.						protein binding				0		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|Epithelial(105;2.36e-06)|all cancers(92;3.78e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0761)		ACCATATAGCGAACGCGCCAA	0.408													37	103					0	0	1	0	0
ALG9	79796	broad.mit.edu	37	11	111708198	111708198	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111708198G>A	uc001pmb.2	-	13	1543	c.1444C>T	c.(1444-1446)CCT>TCT	p.P482S	ALG9_uc001ply.2_Missense_Mutation_p.P311S|ALG9_uc001plz.2_Missense_Mutation_p.P318S|ALG9_uc010rwm.1_Missense_Mutation_p.P489S|ALG9_uc010rwn.1_Missense_Mutation_p.P436S|ALG9_uc010rwo.1_Missense_Mutation_p.P310S|ALG9_uc009yyh.1_Missense_Mutation_p.P377S	NM_001077690	NP_001071158	Q9H6U8	ALG9_HUMAN	asparagine-linked glycosylation 9 protein	482	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			large_intestine(1)|ovary(1)	2		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;6.81e-07)|BRCA - Breast invasive adenocarcinoma(274;1.15e-06)|all cancers(92;1.3e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0587)		TACTTGTCAGGAAGAAGGAAG	0.408													24	52					0	0	1	0	0
C11orf52	91894	broad.mit.edu	37	11	111796863	111796863	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111796863G>A	uc001pmh.2	+	5	795	c.312G>A	c.(310-312)GCG>GCA	p.A104A	C11orf52_uc001pmi.2_Silent_p.A104A	NM_080659	NP_542390	Q96A22	CK052_HUMAN	hypothetical protein LOC91894	104										ovary(1)	1		all_cancers(61;8.8e-15)|all_epithelial(67;6.27e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;3.63e-07)|BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|all cancers(92;6.7e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0512)		CAGAGTATGCGACCCTTCGCT	0.547													12	48					0	0	1	0	0
DIXDC1	85458	broad.mit.edu	37	11	111866190	111866190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111866190G>A	uc001pml.2	+	17	1888	c.1591G>A	c.(1591-1593)GAT>AAT	p.D531N	DIXDC1_uc001pmm.2_Missense_Mutation_p.D320N|DIXDC1_uc001pmn.2_Missense_Mutation_p.D237N|DIXDC1_uc010rwq.1_Missense_Mutation_p.D196N	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	531					multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		CAGTGGCCACGATCCTCAGCA	0.542													28	66					0	0	1	0	0
DIXDC1	85458	broad.mit.edu	37	11	111887485	111887485	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111887485G>A	uc001pml.2	+	19	2124	c.1827G>A	c.(1825-1827)CGG>CGA	p.R609R	DIXDC1_uc001pmm.2_Silent_p.R398R|DIXDC1_uc001pmn.2_Silent_p.R315R|DIXDC1_uc010rwq.1_Silent_p.R274R	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	609	DIX.				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		TCACTGACCGGTCACTTACGC	0.438													6	8					0	0	1	0	0
DIXDC1	85458	broad.mit.edu	37	11	111889718	111889718	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:111889718G>A	uc001pml.2	+	21	2307	c.2010G>A	c.(2008-2010)GGG>GGA	p.G670G	DIXDC1_uc001pmm.2_Silent_p.G459G|DIXDC1_uc001pmn.2_Silent_p.G376G|DIXDC1_uc010rwq.1_Silent_p.G335G	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	670	DIX.				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		GATGGGAAGGGAAAATTGTAG	0.428													28	74					0	0	1	0	0
BCO2	83875	broad.mit.edu	37	11	112070448	112070448	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:112070448C>T	uc001pnf.2	+	6	880	c.763C>T	c.(763-765)CCT>TCT	p.P255S	BCO2_uc001pne.1_Missense_Mutation_p.P82S|BCO2_uc001png.2_Missense_Mutation_p.P182S|BCO2_uc001pnh.2_Missense_Mutation_p.P221S|BCO2_uc010rwt.1_Missense_Mutation_p.P150S|BCO2_uc009yyn.2_Missense_Mutation_p.P221S|BCO2_uc001pni.2_Missense_Mutation_p.P221S	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	255					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TATTCGGGTTCCTCCAGAGAA	0.403													42	104					0	0	1	0	0
NCAM1	4684	broad.mit.edu	37	11	113085140	113085140	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113085140G>A	uc009yyq.1	+	8	1306	c.612G>A	c.(610-612)GAG>GAA	p.E204E	NCAM1_uc001pno.2_Silent_p.E204E	NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	322	Ig-like C2-type 4.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		TGGAATTAGAGGAGCAGGTCA	0.448													9	23					0	0	1	0	0
NCAM1	4684	broad.mit.edu	37	11	113085149	113085149	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113085149C>T	uc009yyq.1	+	8	1315	c.621C>T	c.(619-621)GTC>GTT	p.V207V	NCAM1_uc001pno.2_Silent_p.V207V	NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	325	Ig-like C2-type 4.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		AGGAGCAGGTCACTCTTACCT	0.458													8	21					0	0	1	0	0
NCAM1	4684	broad.mit.edu	37	11	113102448	113102449	+	Missense_Mutation	DNP	GG	AA	AA	rs55757519		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113102448_113102449GG>AA	uc009yyq.1	+	11	1589_1590	c.895_896GG>AA	c.(895-897)GGA>AAA	p.G299K		NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	391	Ig-like C2-type 4.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		CACTGATGCCGGAGAGTACATC	0.594													30	76					0	0	1	0	0
NCAM1	4684	broad.mit.edu	37	11	113105810	113105810	+	Silent	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113105810C>G	uc009yyq.1	+	15	2167	c.1473C>G	c.(1471-1473)GCC>GCG	p.A491A		NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	583	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		CAACGTACGCCGTAAGGCTGG	0.552													6	11					0	0	1	0	0
NCAM1	4684	broad.mit.edu	37	11	113146034	113146034	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113146034G>A	uc001pnt.2	+	2	775	c.207G>A	c.(205-207)ACG>ACA	p.T69T	NCAM1_uc001pns.2_3'UTR|uc010rwu.1_5'Flank			P13591	NCAM1_HUMAN	Homo sapiens cDNA FLJ30008 fis, clone 3NB692000029.	834	Cytoplasmic (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		AGACAGAAACGAAGCCAGCGC	0.547													11	26					0	0	1	0	0
TTC12	54970	broad.mit.edu	37	11	113221964	113221964	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113221964C>T	uc001pnu.2	+	15	1356	c.1251C>T	c.(1249-1251)TTC>TTT	p.F417F	TTC12_uc001pnv.2_Silent_p.F423F|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Silent_p.F267F	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	417							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		TCAACAGATTCCAAGTCTGGT	0.423													14	45					0	0	1	0	0
TTC12	54970	broad.mit.edu	37	11	113233182	113233182	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113233182C>T	uc001pnu.2	+	19	1779	c.1674C>T	c.(1672-1674)GCC>GCT	p.A558A	TTC12_uc001pnv.2_Silent_p.A564A|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Silent_p.A408A	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	558							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		TTGAGGAGGCCTTGCGAGCAG	0.418													33	70					0	0	1	0	0
TTC12	54970	broad.mit.edu	37	11	113234613	113234613	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113234613C>T	uc001pnu.2	+	20	1885	c.1780C>T	c.(1780-1782)CAT>TAT	p.H594Y	TTC12_uc001pnv.2_Missense_Mutation_p.H600Y|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Missense_Mutation_p.H444Y	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	594							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		GAATAGTTATCATGAAGCTCG	0.388													18	46					0	0	1	0	0
ANKK1	255239	broad.mit.edu	37	11	113270348	113270348	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113270348C>T	uc001pny.2	+	8	1751	c.1657C>T	c.(1657-1659)CCT>TCT	p.P553S		NM_178510	NP_848605	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1	553	ANK 6.						ATP binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|ovary(1)|breast(1)	8		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		TGGAGCGGTCCCTGATGCCCT	0.597													6	8					0	0	1	0	0
DRD2	1813	broad.mit.edu	37	11	113283288	113283288	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113283288G>A	uc001pnz.2	-	6	1449	c.1128C>T	c.(1126-1128)GCC>GCT	p.A376A	DRD2_uc010rwv.1_Silent_p.A375A|DRD2_uc001poa.3_Silent_p.A376A|DRD2_uc001pob.3_Silent_p.A347A	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	376	Helical; Name=6; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	CGAGAACAATGGCGAGCATCT	0.582													14	45					0	0	1	0	0
DRD2	1813	broad.mit.edu	37	11	113283333	113283333	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113283333C>T	uc001pnz.2	-	6	1404	c.1083G>A	c.(1081-1083)AGG>AGA	p.R361R	DRD2_uc010rwv.1_Silent_p.R360R|DRD2_uc001poa.3_Silent_p.R361R|DRD2_uc001pob.3_Silent_p.R332R	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	361	Cytoplasmic (By similarity).|Interaction with PPP1R9B (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GGGAGAGCTTCCTACGGCTCA	0.567													25	56					0	0	1	0	0
DRD2	1813	broad.mit.edu	37	11	113286201	113286201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113286201C>T	uc001pnz.2	-	4	986	c.665G>A	c.(664-666)CGA>CAA	p.R222Q	DRD2_uc010rwv.1_Missense_Mutation_p.R221Q|DRD2_uc001poa.3_Missense_Mutation_p.R222Q|DRD2_uc001pob.3_Missense_Mutation_p.R222Q|DRD2_uc009yyr.1_Missense_Mutation_p.R222Q	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	222	Cytoplasmic (By similarity).|Interaction with PPP1R9B (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GGTGTTGACTCGCTTGCGGCG	0.567													44	138					0	0	1	0	0
DRD2	1813	broad.mit.edu	37	11	113287617	113287617	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113287617G>A	uc001pnz.2	-	3	821	c.500C>T	c.(499-501)TCC>TTC	p.S167F	DRD2_uc010rwv.1_Missense_Mutation_p.S166F|DRD2_uc001poa.3_Missense_Mutation_p.S167F|DRD2_uc001pob.3_Missense_Mutation_p.S167F|DRD2_uc009yyr.1_Missense_Mutation_p.S167F	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	167	Helical; Name=4; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GAGTGGGCAGGAGATGGTGAA	0.592													8	33					0	0	1	0	0
DRD2	1813	broad.mit.edu	37	11	113288760	113288760	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113288760G>A	uc001pnz.2	-	2	705	c.384C>T	c.(382-384)ATC>ATT	p.I128I	DRD2_uc010rwv.1_Silent_p.I127I|DRD2_uc001poa.3_Silent_p.I128I|DRD2_uc001pob.3_Silent_p.I128I|DRD2_uc009yyr.1_Silent_p.I128I	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	128	Helical; Name=3; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	TGTCGATGCTGATGGCACACA	0.552													9	41					0	0	1	0	0
DRD2	1813	broad.mit.edu	37	11	113295194	113295194	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113295194G>A	uc001pnz.2	-	1	501	c.180C>T	c.(178-180)TCC>TCT	p.S60S	DRD2_uc010rwv.1_Silent_p.S60S|DRD2_uc001poa.3_Silent_p.S60S|DRD2_uc001pob.3_Silent_p.S60S|DRD2_uc009yyr.1_Silent_p.S60S	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	60	Helical; Name=1; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	CCTTCTCGCGGGACACAGCCA	0.612													22	56					0	0	1	0	0
ZW10	9183	broad.mit.edu	37	11	113614568	113614568	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113614568G>A	uc001poe.2	-	10	1504	c.1467C>T	c.(1465-1467)CTC>CTT	p.L489L	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	489					cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		TCTGATAGGCGAGTTCCATTA	0.403													33	125					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	113661321	113661321	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113661321C>T	uc001pof.1	+	1		c.1369C>T								Homo sapiens cDNA FLJ36034 fis, clone TESTI2017107, highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4.																		TGAAGGAGTTCGTCTTTGATG	0.493													63	69					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	113661535	113661535	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113661535C>T	uc001pof.1	+	1		c.1583C>T								Homo sapiens cDNA FLJ36034 fis, clone TESTI2017107, highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4.																		CTTCCCCTTTCCCCAGGGGTC	0.542													10	118					0	0	1	0	0
USP28	57646	broad.mit.edu	37	11	113679831	113679831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113679831C>T	uc001poh.2	-	17	2151	c.2118G>A	c.(2116-2118)ATG>ATA	p.M706I	USP28_uc001pog.2_Missense_Mutation_p.M414I|USP28_uc010rwy.1_Missense_Mutation_p.M581I|USP28_uc001poi.2_Missense_Mutation_p.M61I	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	706					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		TGGAGGACTCCATTTGAGGGA	0.463													92	223					0	0	1	0	0
USP28	57646	broad.mit.edu	37	11	113679953	113679953	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113679953G>A	uc001poh.2	-	17	2029	c.1996C>T	c.(1996-1998)CAA>TAA	p.Q666*	USP28_uc001pog.2_Nonsense_Mutation_p.Q374*|USP28_uc010rwy.1_Nonsense_Mutation_p.Q541*|USP28_uc001poi.2_Nonsense_Mutation_p.Q21*	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	666					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		TCTGACATTTGATCTGATTCA	0.438													124	311					0	0	1	0	0
USP28	57646	broad.mit.edu	37	11	113694393	113694393	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113694393C>T	uc001poh.2	-	12	1250	c.1217G>A	c.(1216-1218)CGA>CAA	p.R406Q	USP28_uc001pog.2_Missense_Mutation_p.R114Q|USP28_uc010rwy.1_Missense_Mutation_p.R281Q|USP28_uc001poi.2_5'UTR|USP28_uc001poj.3_Missense_Mutation_p.R406Q	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	406					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		TCTCTTATTTCGAATAAGCTC	0.284													17	67					0	0	1	0	0
HTR3B	9177	broad.mit.edu	37	11	113802129	113802129	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113802129G>A	uc001pok.2	+	3	304	c.237G>A	c.(235-237)AAG>AAA	p.K79K	HTR3B_uc001pol.2_Silent_p.K68K	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	79	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		AAATATTAAAGACAAGTGTAT	0.318													15	37					0	0	1	0	0
HTR3B	9177	broad.mit.edu	37	11	113803686	113803686	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113803686G>A	uc001pok.2	+	6	634	c.567G>A	c.(565-567)AGG>AGA	p.R189R	HTR3B_uc001pol.2_Silent_p.R178R	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	189	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		CCTTTCTGAGGAGCCCAGAAG	0.483													21	48					0	0	1	0	0
HTR3B	9177	broad.mit.edu	37	11	113803741	113803741	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113803741G>A	uc001pok.2	+	6	689	c.622G>A	c.(622-624)GAA>AAA	p.E208K	HTR3B_uc001pol.2_Missense_Mutation_p.E197K	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	208	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		CAGTGAGTGGGAACTTCTATC	0.473													7	57					0	0	1	0	0
HTR3B	9177	broad.mit.edu	37	11	113815359	113815359	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113815359C>T	uc001pok.2	+	8	1039	c.972C>T	c.(970-972)GTC>GTT	p.V324V	HTR3B_uc001pol.2_Silent_p.V313V	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	324	Helical; Name=3; (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		TCGTGTTGGTCAAATTCCTCC	0.562													10	83					0	0	1	0	0
HTR3A	3359	broad.mit.edu	37	11	113857486	113857486	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113857486G>A	uc010rxb.1	+	7	1203	c.970G>A	c.(970-972)GAG>AAG	p.E324K	HTR3A_uc010rxa.1_Intron|HTR3A_uc009yyx.2_Intron|HTR3A_uc010rxc.1_Intron	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	TCAGTCTGGTGAGAAACCCGC	0.597													26	137					0	0	1	0	0
ZBTB16	7704	broad.mit.edu	37	11	113934796	113934796	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113934796G>A	uc001pop.2	+	2	1038	c.774G>A	c.(772-774)GGG>GGA	p.G258G	ZBTB16_uc001poo.1_Silent_p.G258G|ZBTB16_uc001poq.2_Silent_p.G258G	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	258					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		ACAGCCCTGGGGCAGCCGAGT	0.647													15	18					0	0	1	0	0
ZBTB16	7704	broad.mit.edu	37	11	113934842	113934842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:113934842G>A	uc001pop.2	+	2	1084	c.820G>A	c.(820-822)GAA>AAA	p.E274K	ZBTB16_uc001poo.1_Missense_Mutation_p.E274K|ZBTB16_uc001poq.2_Missense_Mutation_p.E274K	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	274					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		CAAGGTTGAGGAAAGAGGCAA	0.627													19	31					0	0	1	0	0
NNMT	4837	broad.mit.edu	37	11	114167333	114167333	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:114167333G>A	uc001por.1	+	3	319	c.55G>A	c.(55-57)GAT>AAT	p.D19N	NNMT_uc001pos.1_Missense_Mutation_p.D19N	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	19					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	TAACCCTCGGGATTACCTAGA	0.428													33	74					0	0	1	0	0
NNMT	4837	broad.mit.edu	37	11	114168706	114168706	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:114168706G>A	uc001por.1	+	4	452	c.188G>A	c.(187-189)GGC>GAC	p.G63D	NNMT_uc001pos.1_Missense_Mutation_p.G63D	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	63	S-adenosyl-L-methionine binding.				xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	ATTGACATCGGCTCTGGCCCC	0.512													45	85					0	0	1	0	0
C11orf71	54494	broad.mit.edu	37	11	114270917	114270917	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:114270917G>A	uc001pou.3	-	1	339	c.137C>T	c.(136-138)CCT>CTT	p.P46L	C11orf71_uc001pot.1_Missense_Mutation_p.P46L|RBM7_uc001pov.2_5'Flank|RBM7_uc001pow.2_5'Flank|RBM7_uc001pox.2_5'Flank	NM_019021	NP_061894	Q6IPW1	CK071_HUMAN	hypothetical protein LOC54494	46											0		all_cancers(61;1.15e-11)|all_epithelial(67;5.3e-06)|all_hematologic(158;0.000303)|Acute lymphoblastic leukemia(157;0.000966)|Melanoma(852;0.00153)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.0818)|Prostate(24;0.104)		BRCA - Breast invasive adenocarcinoma(274;2.6e-06)|Epithelial(105;4.31e-05)|all cancers(92;0.00036)		AATCGCTTCAGGCCTGGAAAC	0.662													8	24					0	0	1	0	0
FAM55A	120400	broad.mit.edu	37	11	114392968	114392968	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:114392968C>T	uc001ppa.2	-	6	1357	c.940G>A	c.(940-942)GGT>AGT	p.G314S	FAM55A_uc010rxd.1_Missense_Mutation_p.G163S	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	456						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		TTTTGAACACCGATGGCCCTG	0.438													13	142					0	0	1	0	0
FAM55A	120400	broad.mit.edu	37	11	114393141	114393141	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:114393141C>T	uc001ppa.2	-	6	1184	c.767G>A	c.(766-768)TGG>TAG	p.W256*	FAM55A_uc010rxd.1_Nonsense_Mutation_p.W105*	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	398						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		ATGTTTTTTCCATTGAATCTG	0.373													37	83					0	0	1	0	0
FAM55D	54827	broad.mit.edu	37	11	114451014	114451014	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:114451014G>A	uc001ppc.2	-	5	1120	c.939C>T	c.(937-939)TCC>TCT	p.S313S	FAM55D_uc001ppd.2_Silent_p.S29S	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	313						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		TGGGGATTGTGGATGTCATTC	0.413													29	94					0	0	1	0	0
FAM55B	120406	broad.mit.edu	37	11	114569186	114569186	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:114569186G>A	uc009yyy.2	+	3	650	c.552G>A	c.(550-552)GAG>GAA	p.E184E		NM_182495	NP_872301	Q96DL1	FA55B_HUMAN	hypothetical protein LOC120406	184						integral to membrane				ovary(1)	1						TGTTCTGGGAGGGCCAGGTTT	0.547													8	36					0	0	1	0	0
BUD13	84811	broad.mit.edu	37	11	116633463	116633463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:116633463G>A	uc001ppn.2	-	4	876	c.842C>T	c.(841-843)TCC>TTC	p.S281F	BUD13_uc001ppo.2_Intron|BUD13_uc009yzc.2_Missense_Mutation_p.S281F	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	281										large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		TCTGGGCAGGGAATAAGTGAC	0.512													64	112					0	0	1	0	0
BUD13	84811	broad.mit.edu	37	11	116633707	116633707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:116633707G>A	uc001ppn.2	-	4	632	c.598C>T	c.(598-600)CCT>TCT	p.P200S	BUD13_uc001ppo.2_Missense_Mutation_p.P200S|BUD13_uc009yzc.2_Missense_Mutation_p.P200S	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	200	Arg-rich.									large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		GGGGGAGAAGGATCTGGAGAA	0.567													45	127					0	0	1	0	0
APOA5	116519	broad.mit.edu	37	11	116661443	116661443	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:116661443C>T	uc001ppr.2	-	3	510	c.502G>A	c.(502-504)GAG>AAG	p.E168K	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Missense_Mutation_p.E168K|APOA5_uc009yzf.2_Missense_Mutation_p.E168K|APOA5_uc009yzg.2_Missense_Mutation_p.E194K	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	168					acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		GCCCAAGCCTCGTCCACGCCC	0.667													20	53					0	0	1	0	0
APOA5	116519	broad.mit.edu	37	11	116661629	116661629	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:116661629G>A	uc001ppr.2	-	3	324	c.316C>T	c.(316-318)CGC>TGC	p.R106C	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Missense_Mutation_p.R106C|APOA5_uc009yzf.2_Missense_Mutation_p.R106C|APOA5_uc009yzg.2_Missense_Mutation_p.R132C	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	106	Potential.				acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		GGCTGGAGGCGAGCCTTCACC	0.642													29	79					0	0	1	0	0
APOA4	337	broad.mit.edu	37	11	116692388	116692388	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:116692388C>T	uc001pps.1	-	3	490	c.386G>A	c.(385-387)CGA>CAA	p.R129Q		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		ctgaagctctcgcaggttgtc	0.269													3	12					0	0	1	0	0
SIK3	23387	broad.mit.edu	37	11	116744716	116744716	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:116744716G>A	uc001ppy.2	-	12	1346	c.1310C>T	c.(1309-1311)CCC>CTC	p.P437L	SIK3_uc001ppz.2_Missense_Mutation_p.P336L|SIK3_uc001pqa.2_Missense_Mutation_p.P389L	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	437						cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						TGGAGCCTGGGGGTTGACTCC	0.468													31	100					0	0	1	0	0
PAFAH1B2	5049	broad.mit.edu	37	11	117038270	117038270	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117038270C>T	uc001pqe.1	+	6	647	c.545C>T	c.(544-546)TCG>TTG	p.S182L	PAFAH1B2_uc009yzk.1_Intron|PAFAH1B2_uc009yzl.1_Intron|PAFAH1B2_uc009yzm.2_Intron|PAFAH1B2_uc009yzn.2_Intron|PAFAH1B2_uc009yzj.1_RNA|uc001pqf.2_5'Flank	NM_002572	NP_002563	P68402	PA1B2_HUMAN	platelet-activating factor acetylhydrolase,	182					lipid catabolic process	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity			kidney(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;1.68e-05)|Epithelial(105;0.000162)|all cancers(92;0.00111)		TTTGTGCACTCGGACGGTGCC	0.537			T	IGH@	MLCLS								8	55					0	0	1	0	0
PCSK7	9159	broad.mit.edu	37	11	117100449	117100449	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117100449G>A	uc001pqr.2	-	3	313	c.112C>T	c.(112-114)CTG>TTG	p.L38L	RNF214_uc001pqt.2_5'Flank	NM_004716	NP_004707	Q16549	PCSK7_HUMAN	proprotein convertase subtilisin/kexin type 7	38					peptide hormone processing	integral to Golgi membrane	serine-type endopeptidase activity				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|Epithelial(105;6.71e-05)|all cancers(92;0.000537)		GTCCCTGCCAGGCCCATGACC	0.652			T	IGH@	MLCLS								11	29					0	0	1	0	0
RNF214	257160	broad.mit.edu	37	11	117152902	117152902	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117152902C>T	uc001pqt.2	+	11	1673	c.1628C>T	c.(1627-1629)TCT>TTT	p.S543F	RNF214_uc001pqu.2_Missense_Mutation_p.S543F|RNF214_uc010rxf.1_Missense_Mutation_p.S388F	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	543	Pro-rich.						zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		GTTAAGGCTTCTGCTGAAACT	0.592													28	201					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117299059	117299059	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117299059G>A	uc001prh.1	-	33	6329	c.6327C>T	c.(6325-6327)TCC>TCT	p.S2109S		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	2049	Cytoplasmic (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CCAGGGTGTAGGATTTGGAGT	0.627													25	70					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117306422	117306422	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117306422C>T	uc001prh.1	-	27	4996	c.4994G>A	c.(4993-4995)GGG>GAG	p.G1665E		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1605	Helical; (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CAGTGCCACCCCCAGTGTGGC	0.577													31	61					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117310547	117310547	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117310547C>T	uc001prh.1	-	22	4150	c.4148G>A	c.(4147-4149)TGG>TAG	p.W1383*		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1323	Extracellular (Potential).|Ig-like C2-type 10.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GTCCTTGGTCCACTTCACAGC	0.567													45	186					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117352753	117352753	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117352753G>A	uc001prh.1	-	12	2666	c.2664C>T	c.(2662-2664)GTC>GTT	p.V888V		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	828	Extracellular (Potential).|Ig-like C2-type 9.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CAGGGTCGATGACTGTGTCCC	0.627													24	63					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117403124	117403125	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117403124_117403125GG>AA	uc001prh.1	-	4	806_807	c.804_805CC>TT	c.(802-807)ACCCGG>ACTTGG	p.R269W	DSCAML1_uc001pri.1_Missense_Mutation_p.R73W	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	209	Extracellular (Potential).|Ig-like C2-type 2.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TTGCTCTGCCGGGTCTCCCCGC	0.614													9	75					0	0	1	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117774392	117774392	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117774392G>A	uc001prs.1	-	12	1748	c.1655C>T	c.(1654-1656)CCC>CTC	p.P552L	TMPRSS13_uc009yzr.1_Missense_Mutation_p.P231L|TMPRSS13_uc001prt.1_Missense_Mutation_p.P231L	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	547	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		GTAAATCCAGGGAAGAACTTC	0.577													14	28					0	0	1	0	0
IL10RA	3587	broad.mit.edu	37	11	117870052	117870052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:117870052G>A	uc001prv.2	+	7	1510	c.1433G>A	c.(1432-1434)GGG>GAG	p.G478E	IL10RA_uc010rxl.1_Missense_Mutation_p.G458E|IL10RA_uc010rxm.1_Missense_Mutation_p.G458E|IL10RA_uc010rxn.1_Missense_Mutation_p.G329E|IL10RA_uc001prw.2_Missense_Mutation_p.G329E	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	478	Cytoplasmic (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		CCCAAATTCGGGAGATGCCTG	0.562													19	69					0	0	1	0	0
SCN4B	6330	broad.mit.edu	37	11	118007795	118007795	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118007795C>T	uc001pse.2	-	5	876	c.634G>A	c.(634-636)GAG>AAG	p.E212K	SCN4B_uc010rxu.1_Missense_Mutation_p.E102K|SCN4B_uc010rxv.1_Missense_Mutation_p.E78K	NM_174934	NP_777594	Q8IWT1	SCN4B_HUMAN	sodium channel, voltage-gated, type IV, beta	212	Cytoplasmic (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;3.33e-05)|Epithelial(105;0.00126)		AAGCCGTTCTCCGTGTTGTCA	0.577													9	32					0	0	1	0	0
SCN4B	6330	broad.mit.edu	37	11	118015828	118015828	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118015828C>T	uc001pse.2	-	2	420	c.178G>A	c.(178-180)GGC>AGC	p.G60S	SCN4B_uc010rxu.1_5'UTR|SCN4B_uc010rxv.1_Intron	NM_174934	NP_777594	Q8IWT1	SCN4B_HUMAN	sodium channel, voltage-gated, type IV, beta	60	Ig-like C2-type.|Extracellular (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;3.33e-05)|Epithelial(105;0.00126)		TCCTCGAAGCCAAAGCAGCTG	0.562											OREG0021380	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	59	164					0	0	1	0	0
SCN4B	6330	broad.mit.edu	37	11	118015844	118015844	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118015844G>A	uc001pse.2	-	2	404	c.162C>T	c.(160-162)ACC>ACT	p.T54T	SCN4B_uc010rxu.1_5'UTR|SCN4B_uc010rxv.1_Intron	NM_174934	NP_777594	Q8IWT1	SCN4B_HUMAN	sodium channel, voltage-gated, type IV, beta	54	Ig-like C2-type.|Extracellular (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;3.33e-05)|Epithelial(105;0.00126)		AGCTGGAGAAGGTGCAGGGCA	0.557											OREG0021380	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	146					0	0	1	0	0
SCN2B	6327	broad.mit.edu	37	11	118037788	118037788	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118037788C>T	uc001psf.2	-	4	653	c.462G>A	c.(460-462)CGG>CGA	p.R154R		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	154	Ig-like C2-type.|Extracellular (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		CCGTGGAGTCCCGCTCAGGGG	0.617													21	48					0	0	1	0	0
SCN2B	6327	broad.mit.edu	37	11	118039326	118039326	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118039326C>T	uc001psf.2	-	2	402	c.211G>A	c.(211-213)GAG>AAG	p.E71K		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	71	Ig-like C2-type.|Extracellular (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		TTGTTGCACTCCTGGTAAGTC	0.597													60	150					0	0	1	0	0
AMICA1	120425	broad.mit.edu	37	11	118071269	118071269	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118071269G>A	uc001psk.2	-	7	1005	c.831C>T	c.(829-831)ATC>ATT	p.I277I	AMICA1_uc001psg.2_Silent_p.I87I|AMICA1_uc001psh.2_Silent_p.I238I|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Silent_p.I267I|AMICA1_uc001psj.2_Silent_p.I266I|AMICA1_uc010rxw.1_Silent_p.I238I|AMICA1_uc010rxx.1_Silent_p.I277I|AMICA1_uc001psl.1_Silent_p.I233I	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	277	Helical; (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		TTCCCACAATGATCACCAACT	0.512													29	63					0	0	1	0	0
MPZL2	10205	broad.mit.edu	37	11	118133292	118133292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118133292C>T	uc001psn.2	-	3	438	c.297G>A	c.(295-297)GGG>GGA	p.G99G	MPZL2_uc001pso.2_Silent_p.G99G|MPZL2_uc001psp.1_Silent_p.G99G	NM_005797	NP_005788	O60487	MPZL2_HUMAN	myelin protein zero-like 2 precursor	99	Extracellular (Potential).|Ig-like V-type.				anatomical structure morphogenesis|homophilic cell adhesion	cytoskeleton|integral to membrane				skin(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		GCTCAGGATTCCCATCCCAAG	0.517													5	59					0	0	1	0	0
MPZL2	10205	broad.mit.edu	37	11	118134847	118134847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118134847G>A	uc001psn.2	-	1	163	c.22C>T	c.(22-24)CGT>TGT	p.R8C	MPZL2_uc001pso.2_Missense_Mutation_p.R8C|MPZL2_uc001psp.1_Missense_Mutation_p.R8C	NM_005797	NP_005788	O60487	MPZL2_HUMAN	myelin protein zero-like 2 precursor	8					anatomical structure morphogenesis|homophilic cell adhesion	cytoskeleton|integral to membrane				skin(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		AGCACCGCACGAGTAGAGCTC	0.577													6	71					0	0	1	0	0
CD3E	916	broad.mit.edu	37	11	118183390	118183390	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118183390G>A	uc001psq.3	+	6	417	c.161G>A	c.(160-162)GGA>GAA	p.G54E	CD3E_uc010rya.1_Missense_Mutation_p.G54E	NM_000733	NP_000724	P07766	CD3E_HUMAN	CD3E antigen, epsilon polypeptide precursor	54	Extracellular (Potential).|Ig-like.				G-protein coupled receptor protein signaling pathway|signal complex assembly|T cell costimulation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	external side of plasma membrane|integral to plasma membrane	protein heterodimerization activity|protein kinase binding|receptor signaling complex scaffold activity|receptor signaling protein activity|SH3 domain binding|T cell receptor binding|transmembrane receptor activity			ovary(2)	2	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.09e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0251)	Muromonab(DB00075)	CAGTATCCTGGATCTGAAATA	0.413													90	176					0	0	1	0	0
CD3E	916	broad.mit.edu	37	11	118183534	118183534	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118183534G>A	uc001psq.3	+	6	561	c.305G>A	c.(304-306)GGA>GAA	p.G102E	CD3E_uc010rya.1_Missense_Mutation_p.G102E	NM_000733	NP_000724	P07766	CD3E_HUMAN	CD3E antigen, epsilon polypeptide precursor	102	Extracellular (Potential).|Ig-like.				G-protein coupled receptor protein signaling pathway|signal complex assembly|T cell costimulation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	external side of plasma membrane|integral to plasma membrane	protein heterodimerization activity|protein kinase binding|receptor signaling complex scaffold activity|receptor signaling protein activity|SH3 domain binding|T cell receptor binding|transmembrane receptor activity			ovary(2)	2	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.09e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0251)	Muromonab(DB00075)	TACCCCAGAGGAAGCAAACCA	0.458													14	109					0	0	1	0	0
CD3D	915	broad.mit.edu	37	11	118211092	118211092	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118211092C>T	uc001pss.1	-	2	409	c.272G>A	c.(271-273)CGA>CAA	p.R91Q	CD3D_uc001pst.1_Missense_Mutation_p.R91Q	NM_000732	NP_000723	P04234	CD3D_HUMAN	CD3 antigen, delta subunit isoform A precursor	91	Extracellular (Potential).				positive thymic T cell selection|T cell costimulation|T cell receptor signaling pathway	cytoplasm|integral to membrane	protein heterodimerization activity			ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		GCACGTACTTCGATAATGAAC	0.463													14	55					0	0	1	0	0
CD3D	915	broad.mit.edu	37	11	118211307	118211307	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118211307C>T	uc001pss.1	-	2	194	c.57G>A	c.(55-57)GTG>GTA	p.V19V	CD3D_uc001pst.1_Silent_p.V19V	NM_000732	NP_000723	P04234	CD3D_HUMAN	CD3 antigen, delta subunit isoform A precursor	19					positive thymic T cell selection|T cell costimulation|T cell receptor signaling pathway	cytoplasm|integral to membrane	protein heterodimerization activity			ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		TGAAGGGGCTCACTAAAGGGG	0.463													8	23					0	0	1	0	0
MLL	4297	broad.mit.edu	37	11	118343602	118343602	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118343602C>T	uc001pta.2	+	3	1751	c.1728C>T	c.(1726-1728)TCC>TCT	p.S576S	MLL_uc001ptb.2_Silent_p.S576S|MLL_uc001psz.1_Silent_p.S609S|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	576					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AGCCAGCCTCCAGTATCTCTG	0.532			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								38	84					0	0	1	0	0
MLL	4297	broad.mit.edu	37	11	118360862	118360862	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118360862C>T	uc001pta.2	+	13	4617	c.4594C>T	c.(4594-4596)CGC>TGC	p.R1532C	MLL_uc001ptb.2_Missense_Mutation_p.R1532C|MLL_uc001pte.1_RNA	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1532	PHD-type 2.				apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CAAGTGTGTTCGCTGTAAGAG	0.383			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								14	52					0	0	1	0	0
MLL	4297	broad.mit.edu	37	11	118372518	118372518	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118372518C>T	uc001pta.2	+	26	6465	c.6442C>T	c.(6442-6444)CCC>TCC	p.P2148S	MLL_uc001ptb.2_Missense_Mutation_p.P2151S	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2148					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GATTCGAACACCCAGTTATTC	0.463			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								56	149					0	0	1	0	0
MLL	4297	broad.mit.edu	37	11	118375153	118375153	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118375153C>A	uc001pta.2	+	27	8560	c.8537C>A	c.(8536-8538)CCT>CAT	p.P2846H	MLL_uc001ptb.2_Missense_Mutation_p.P2849H	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2846					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AATATCCTGCCTTCAGACATT	0.428			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								46	150					1.06522e-23	1.07136e-23	1	1	0
MLL	4297	broad.mit.edu	37	11	118375399	118375399	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118375399C>T	uc001pta.2	+	27	8806	c.8783C>T	c.(8782-8784)CCA>CTA	p.P2928L	MLL_uc001ptb.2_Missense_Mutation_p.P2931L	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2928					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CTAGAGCTACCATCTGATCTG	0.498			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								49	129					0	0	1	0	0
TTC36	143941	broad.mit.edu	37	11	118399470	118399470	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118399470C>T	uc001ptg.1	+	2	271	c.271C>T	c.(271-273)CGT>TGT	p.R91C	TTC36_uc010ryb.1_RNA|TTC36_uc010ryc.1_Missense_Mutation_p.R32C|TMEM25_uc010ryd.1_5'Flank|TMEM25_uc001ptk.3_5'Flank|TMEM25_uc010rye.1_5'Flank|TMEM25_uc001pth.2_5'Flank|TMEM25_uc009zad.2_5'Flank|TMEM25_uc001pti.2_5'Flank|TMEM25_uc010ryf.1_5'Flank|TMEM25_uc001ptl.2_5'Flank|TMEM25_uc001ptm.2_5'Flank	NM_001080441	NP_001073910	A6NLP5	TTC36_HUMAN	tetratricopeptide repeat domain 36	91	TPR 2.						binding				0						CTACAACAACCGTGCCCAGGC	0.637													22	31					0	0	1	0	0
PHLDB1	23187	broad.mit.edu	37	11	118514600	118514600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118514600C>T	uc001ptr.1	+	15	3313	c.2960C>T	c.(2959-2961)TCT>TTT	p.S987F	PHLDB1_uc001pts.2_Missense_Mutation_p.S987F|PHLDB1_uc001ptt.2_Missense_Mutation_p.S940F|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Missense_Mutation_p.S787F|PHLDB1_uc001ptw.1_Missense_Mutation_p.S342F|PHLDB1_uc009zai.1_Missense_Mutation_p.S23F|PHLDB1_uc001ptx.1_Missense_Mutation_p.S23F|PHLDB1_uc010ryi.1_Missense_Mutation_p.S130F|PHLDB1_uc010ryj.1_Missense_Mutation_p.S125F	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	987											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		tcctctggctcttcctcctcc	0.512													29	43					0	0	1	0	0
PHLDB1	23187	broad.mit.edu	37	11	118516191	118516191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118516191C>T	uc001ptr.1	+	17	3592	c.3239C>T	c.(3238-3240)CCC>CTC	p.P1080L	PHLDB1_uc001pts.2_Missense_Mutation_p.P1080L|PHLDB1_uc001ptt.2_Missense_Mutation_p.P1033L|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Missense_Mutation_p.P895L|PHLDB1_uc001ptw.1_Missense_Mutation_p.P435L|PHLDB1_uc009zai.1_Missense_Mutation_p.P116L|PHLDB1_uc001ptx.1_Missense_Mutation_p.P116L|PHLDB1_uc010ryi.1_Missense_Mutation_p.P223L	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	1080											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		CCAGCGGGCCCCTCGGGCTTC	0.672													25	98					0	0	1	0	0
TREH	11181	broad.mit.edu	37	11	118529660	118529660	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118529660C>T	uc001pty.1	-	13	1544	c.1499G>A	c.(1498-1500)CGA>CAA	p.R500Q	TREH_uc009zaj.1_Missense_Mutation_p.R469Q|TREH_uc001ptz.1_Missense_Mutation_p.R377Q	NM_007180	NP_009111	O43280	TREA_HUMAN	trehalase precursor	500					polysaccharide digestion|trehalose catabolic process	anchored to plasma membrane	alpha,alpha-trehalase activity	p.R500P(1)		pancreas(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.16e-05)		AAAATTGGTTCGGATCCAATT	0.587													67	139					0	0	1	0	0
CXCR5	643	broad.mit.edu	37	11	118764380	118764380	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118764380G>A	uc001pue.3	+	2	237	c.127G>A	c.(127-129)GGG>AGG	p.G43R	CXCR5_uc001puf.2_5'UTR	NM_001716	NP_001707	P32302	CXCR5_HUMAN	Burkitt lymphoma receptor 1 isoform 1	43	Extracellular (Potential).				B cell activation|cellular component movement	integral to plasma membrane	C-X-C chemokine receptor activity			breast(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		TGCCACAGAGGGGCCCCTCAT	0.597													30	102					0	0	1	0	0
CXCR5	643	broad.mit.edu	37	11	118764585	118764585	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118764585G>A	uc001pue.3	+	2	442	c.332G>A	c.(331-333)GGC>GAC	p.G111D	CXCR5_uc001puf.2_Missense_Mutation_p.G66D	NM_001716	NP_001707	P32302	CXCR5_HUMAN	Burkitt lymphoma receptor 1 isoform 1	111	Extracellular (Potential).				B cell activation|cellular component movement	integral to plasma membrane	C-X-C chemokine receptor activity			breast(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		GTGGCCGAGGGCTCTGTGGGC	0.627													29	61					0	0	1	0	0
CXCR5	643	broad.mit.edu	37	11	118764606	118764606	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118764606G>A	uc001pue.3	+	2	463	c.353G>A	c.(352-354)GGG>GAG	p.G118E	CXCR5_uc001puf.2_Missense_Mutation_p.G73E	NM_001716	NP_001707	P32302	CXCR5_HUMAN	Burkitt lymphoma receptor 1 isoform 1	118	Extracellular (Potential).				B cell activation|cellular component movement	integral to plasma membrane	C-X-C chemokine receptor activity			breast(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		TGGGTCCTGGGGACCTTCCTC	0.617													26	57					0	0	1	0	0
BCL9L	283149	broad.mit.edu	37	11	118779085	118779085	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118779085G>A	uc001pug.2	-	2	1271	c.306C>T	c.(304-306)CCC>CCT	p.P102P	BCL9L_uc009zal.2_Silent_p.P97P	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	102					negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		AGCTGAAAGGGGGCACCCCTG	0.637													32	79					0	0	1	0	0
FOXR1	283150	broad.mit.edu	37	11	118849510	118849510	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118849510G>A	uc001pui.2	+	2	305	c.80G>A	c.(79-81)CGA>CAA	p.R27Q	FOXR1_uc001puj.2_RNA|FOXR1_uc001puk.2_5'UTR	NM_181721	NP_859072	Q6PIV2	FOXR1_HUMAN	forkhead box R1	27					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		TATAAACTCCGAATTGTTAAG	0.448													46	132					0	0	1	0	0
FOXR1	283150	broad.mit.edu	37	11	118850327	118850327	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118850327G>A	uc001pui.2	+	4	785	c.560G>A	c.(559-561)AGA>AAA	p.R187K	FOXR1_uc001puj.2_RNA|FOXR1_uc001puk.2_Intron	NM_181721	NP_859072	Q6PIV2	FOXR1_HUMAN	forkhead box R1	187	Fork-head.				embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		CTGGCATTAAGAAACAGTTCC	0.637													44	111					0	0	1	0	0
DPAGT1	1798	broad.mit.edu	37	11	118967876	118967876	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118967876G>A	uc001pvi.2	-	8	1557	c.1137C>T	c.(1135-1137)CTC>CTT	p.L379L	H2AFX_uc001pvg.2_5'Flank|H2AFX_uc001pvh.1_5'Flank|DPAGT1_uc001pvj.2_Silent_p.L272L|DPAGT1_uc009zaq.2_RNA|DPAGT1_uc001pvk.2_Silent_p.L207L|DPAGT1_uc010ryz.1_Silent_p.L379L|DPAGT1_uc001pvm.1_3'UTR|DPAGT1_uc010rza.1_Silent_p.L272L	NM_001382	NP_001373	Q9H3H5	GPT_HUMAN	UDP-N-acetylglucosamine-dolichyl-phosphate	379	Helical; (Potential).				dolichol biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein oligomerization	integral to endoplasmic reticulum membrane|microsome	phospho-N-acetylmuramoyl-pentapeptide-transferase activity|transferase activity, transferring glycosyl groups|UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity			breast(2)|ovary(1)	3	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.55e-05)		GGAGCAATGTGAGGTTTCTCT	0.473													65	137					0	0	1	0	0
C2CD2L	9854	broad.mit.edu	37	11	118986957	118986957	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:118986957C>T	uc001pvo.2	+	14	2471	c.2112C>T	c.(2110-2112)CCC>CCT	p.P704P	C2CD2L_uc001pvn.2_Silent_p.P705P	NM_014807	NP_055622	O14523	C2C2L_HUMAN	transmembrane protein 24	704						integral to membrane					0						ACCCCAGCCCCCAGCTCTGAG	0.597													14	50					0	0	1	0	0
HINFP	25988	broad.mit.edu	37	11	119003883	119003883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119003883C>T	uc001pvp.2	+	10	1282	c.1093C>T	c.(1093-1095)CGC>TGC	p.R365C	HINFP_uc001pvq.2_Missense_Mutation_p.R365C|HINFP_uc001pvr.2_Missense_Mutation_p.R118C	NM_015517	NP_056332	Q9BQA5	HINFP_HUMAN	MBD2 (methyl-CpG-binding protein)-interacting	365	C2H2-type 9.				DNA damage checkpoint|DNA repair|establishment of protein localization|in utero embryonic development|myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	enzyme binding|histone binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						CGTGCACCTTCGCAAGAAGCA	0.502													42	139					0	0	1	0	0
ABCG4	64137	broad.mit.edu	37	11	119025267	119025267	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119025267G>A	uc001pvs.2	+	5	858	c.522G>A	c.(520-522)CAG>CAA	p.Q174Q	ABCG4_uc009zar.2_Silent_p.Q174Q	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	174	Cytoplasmic (Potential).|ABC transporter.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GTGAGAAGCAGGAGGTGAAGA	0.582													9	26					0	0	1	0	0
ABCG4	64137	broad.mit.edu	37	11	119025518	119025518	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119025518C>T	uc001pvs.2	+	6	915	c.579C>T	c.(577-579)TGC>TGT	p.C193C	ABCG4_uc009zar.2_Silent_p.C193C	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	193	Cytoplasmic (Potential).|ABC transporter.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		TGATGTCGTGCTCCCACACGA	0.642													45	140					0	0	1	0	0
ABCG4	64137	broad.mit.edu	37	11	119027100	119027100	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119027100G>A	uc001pvs.2	+	7	1084	c.748G>A	c.(748-750)GGC>AGC	p.G250S	ABCG4_uc009zar.2_Missense_Mutation_p.G250S	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	250	Cytoplasmic (Potential).|ABC transporter.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GGCACAGGGGGGCCGTACCAT	0.587													66	163					0	0	1	0	0
ABCG4	64137	broad.mit.edu	37	11	119031618	119031618	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119031618G>A	uc001pvs.2	+	15	2079	c.1743G>A	c.(1741-1743)ACG>ACA	p.T581T	ABCG4_uc009zar.2_Silent_p.T581T	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	581	Extracellular (Potential).|ABC transmembrane type-2.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		TGATCCTGACGATCTATGGCA	0.572													14	29					0	0	1	0	0
NLRX1	79671	broad.mit.edu	37	11	119045960	119045960	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119045960C>T	uc001pvu.2	+	6	1863	c.1648C>T	c.(1648-1650)CCT>TCT	p.P550S	NLRX1_uc010rzc.1_Missense_Mutation_p.P372S|NLRX1_uc001pvv.2_Missense_Mutation_p.P550S|NLRX1_uc001pvw.2_Missense_Mutation_p.P550S|NLRX1_uc001pvx.2_Missense_Mutation_p.P550S	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	550	Required for interaction with MAVS.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GCGGGCTCTGCCTCTGCTCTT	0.627													35	66					0	0	1	0	0
NLRX1	79671	broad.mit.edu	37	11	119053036	119053036	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119053036C>T	uc001pvu.2	+	9	2803	c.2588C>T	c.(2587-2589)CCT>CTT	p.P863L	NLRX1_uc001pvv.2_Missense_Mutation_p.P863L|NLRX1_uc001pvw.2_Missense_Mutation_p.P863L|NLRX1_uc001pvx.2_Missense_Mutation_p.P863L	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	863	LRR 7.|Required for the repression of MAVS- induced interferon signaling.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		CGGGAGCACCCTTCCCTGGAA	0.637													24	105					0	0	1	0	0
NLRX1	79671	broad.mit.edu	37	11	119053962	119053962	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119053962C>T	uc001pvu.2	+	10	2957	c.2742C>T	c.(2740-2742)CTC>CTT	p.L914L	NLRX1_uc001pvv.2_Intron|NLRX1_uc001pvw.2_Silent_p.L914L|NLRX1_uc001pvx.2_Silent_p.L914L|PDZD3_uc001pvy.2_5'Flank|PDZD3_uc001pvz.2_5'Flank|PDZD3_uc010rzd.1_5'Flank|PDZD3_uc001pwa.2_5'Flank|PDZD3_uc001pwb.2_5'Flank	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	914	Required for the repression of MAVS- induced interferon signaling.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		CAGTGATCCTCAGTGAAGTCC	0.617													9	74					0	0	1	0	0
PDZD3	79849	broad.mit.edu	37	11	119058284	119058284	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119058284C>T	uc001pwb.2	+	4	1254	c.730C>T	c.(730-732)CCT>TCT	p.P244S	PDZD3_uc001pvy.2_Missense_Mutation_p.P178S|PDZD3_uc001pvz.2_Missense_Mutation_p.P178S|PDZD3_uc010rzd.1_Missense_Mutation_p.P165S|PDZD3_uc001pwa.2_5'UTR			Q86UT5	NHRF4_HUMAN	RecName: Full=Na(+)/H(+) exchange regulatory cofactor NHE-RF4;          Short=NHERF-4; AltName: Full=PDZ domain-containing protein 3; AltName: Full=PDZ domain-containing protein 2; AltName: Full=Intestinal and kidney-enriched PDZ protein; AltName: Full=Sodium-hydrogen exchanger regulatory factor 4;	244	PDZ 2.				cGMP-mediated signaling|ion transport|negative regulation of cGMP biosynthetic process|response to toxin|water transport	apical part of cell|brush border|cytosol|membrane fraction|subapical complex	guanylate cyclase inhibitor activity|ion channel inhibitor activity|protein C-terminus binding			breast(1)	1	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;7.52e-05)		CAATCAGGGTCCTTTCTGGTT	0.582													3	8					0	0	1	0	0
CBL	867	broad.mit.edu	37	11	119156009	119156009	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119156009C>T	uc001pwe.2	+	11	1812	c.1674C>T	c.(1672-1674)TCC>TCT	p.S558S		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	558	Pro-rich.				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		GAGCAGAATCCCGACCTCAAA	0.577									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome		OREG0021401	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	72					0	0	1	0	0
MFRP	83552	broad.mit.edu	37	11	119216557	119216557	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119216557G>A	uc001pwj.2	-	4	513	c.353C>T	c.(352-354)ACC>ATC	p.T118I	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Missense_Mutation_p.T118I	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		ggtggtgatggtgggggtggt	0.547													27	61					0	0	1	0	0
MFRP	83552	broad.mit.edu	37	11	119216622	119216622	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119216622G>A	uc001pwj.2	-	4	448	c.288C>T	c.(286-288)CCC>CCT	p.P96P	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Silent_p.P96P	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	17						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		CCCCAGATGGGGGTGCAGCCT	0.532													22	48					0	0	1	0	0
USP2	9099	broad.mit.edu	37	11	119228486	119228486	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119228486G>A	uc001pwm.3	-	10	1777	c.1482C>T	c.(1480-1482)TTC>TTT	p.F494F	USP2_uc001pwl.3_Silent_p.F285F|USP2_uc001pwn.3_Silent_p.F251F	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	494	Necessary for interaction with MDM4.				cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		AGATCTTTGGGAACCTCTGGA	0.498													167	402					0	0	1	0	0
USP2	9099	broad.mit.edu	37	11	119229819	119229819	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119229819G>A	uc001pwm.3	-	6	1382	c.1087C>T	c.(1087-1089)CGC>TGC	p.R363C	USP2_uc001pwl.3_Missense_Mutation_p.R154C|USP2_uc001pwn.3_Missense_Mutation_p.R120C	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	363					cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		AGAAGAAAGCGAAGGAACTCC	0.527													38	21					0	0	1	0	0
TRIM29	23650	broad.mit.edu	37	11	119986065	119986065	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119986065G>A	uc001pwz.2	-	8	1809	c.1685C>T	c.(1684-1686)TCT>TTT	p.S562F	TRIM29_uc001pwx.2_RNA|TRIM29_uc001pwy.2_Missense_Mutation_p.S95F|TRIM29_uc010rzi.1_Missense_Mutation_p.S301F|TRIM29_uc010rzj.1_Missense_Mutation_p.S295F|TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	562					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		CTGCTTGCCAGATTTCCAAGT	0.612													9	24					0	0	1	0	0
TRIM29	23650	broad.mit.edu	37	11	119996563	119996563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:119996563G>A	uc001pwz.2	-	4	1293	c.1169C>T	c.(1168-1170)CCC>CTC	p.P390L	TRIM29_uc001pwy.2_5'Flank|TRIM29_uc010rzi.1_Missense_Mutation_p.P129L|TRIM29_uc010rzj.1_Missense_Mutation_p.P123L|TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	390					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		CAGGGGTGGGGGGAGAGAGTA	0.537													25	63					0	0	1	0	0
TRIM29	23650	broad.mit.edu	37	11	120008510	120008510	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120008510C>T	uc001pwz.2	-	1	354	c.230G>A	c.(229-231)CGA>CAA	p.R77Q	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	77					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		GATGATGGGTCGCCGCCACTC	0.637													81	189					0	0	1	0	0
TRIM29	23650	broad.mit.edu	37	11	120008530	120008530	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120008530G>A	uc001pwz.2	-	1	334	c.210C>T	c.(208-210)TTC>TTT	p.F70F	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	70					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		CATTGCCCGCGAACAGGGCGC	0.622													36	201					0	0	1	0	0
TRIM29	23650	broad.mit.edu	37	11	120008550	120008550	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120008550C>T	uc001pwz.2	-	1	314	c.190G>A	c.(190-192)GAA>AAA	p.E64K	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	64					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		CTCCTACCTTCCCCTGGCTTC	0.632													53	156					0	0	1	0	0
POU2F3	25833	broad.mit.edu	37	11	120169044	120169044	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120169044G>A	uc001pxc.2	+	4	305	c.203G>A	c.(202-204)GGA>GAA	p.G68E	POU2F3_uc010rzk.1_Silent_p.R6R|POU2F3_uc010rzl.1_5'UTR	NM_014352	NP_055167	Q9UKI9	PO2F3_HUMAN	POU transcription factor	68					negative regulation by host of viral transcription	cytoplasm	sequence-specific DNA binding			ovary(1)|skin(1)	2		Breast(109;0.0011)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;6.85e-06)		CTGAGTCAAGGACCTGCCATG	0.522													105	161					0	0	1	0	0
POU2F3	25833	broad.mit.edu	37	11	120188070	120188070	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120188070C>T	uc001pxc.2	+	12	1370	c.1268C>T	c.(1267-1269)TCA>TTA	p.S423L	POU2F3_uc010rzk.1_Missense_Mutation_p.S377L|POU2F3_uc010rzl.1_Missense_Mutation_p.S353L|POU2F3_uc001pxe.1_Missense_Mutation_p.S208L|POU2F3_uc001pxf.1_RNA	NM_014352	NP_055167	Q9UKI9	PO2F3_HUMAN	POU transcription factor	423	Ser-rich.				negative regulation by host of viral transcription	cytoplasm	sequence-specific DNA binding			ovary(1)|skin(1)	2		Breast(109;0.0011)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;6.85e-06)		TTTAACTCTTCAGGGTAAGGT	0.532													28	78					0	0	1	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120349057	120349057	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120349057C>T	uc001pxl.1	+	37	3732	c.3725C>T	c.(3724-3726)CCT>CTT	p.P1242L	ARHGEF12_uc009zat.2_Missense_Mutation_p.P1223L|ARHGEF12_uc009zau.1_Missense_Mutation_p.P1139L	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	1242					apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		TCACACCTGCCTGTCTCAGAA	0.398			T	MLL	AML								35	73					0	0	1	0	0
GRIK4	2900	broad.mit.edu	37	11	120690526	120690526	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120690526C>T	uc001pxn.2	+	6	695	c.408C>T	c.(406-408)ACC>ACT	p.T136T	GRIK4_uc009zav.1_Silent_p.T136T|GRIK4_uc009zaw.1_Silent_p.T136T|GRIK4_uc009zax.1_Silent_p.T136T	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	136	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	GATTCACAACCCTGAACCTCC	0.557													104	279					0	0	1	0	0
GRIK4	2900	broad.mit.edu	37	11	120702688	120702688	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120702688C>T	uc001pxn.2	+	7	926	c.639C>T	c.(637-639)GCC>GCT	p.A213A	GRIK4_uc009zav.1_Silent_p.A213A|GRIK4_uc009zaw.1_Silent_p.A213A|GRIK4_uc009zax.1_Silent_p.A213A	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	213	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	ACAAGACCGCCACCATCATCA	0.642													13	161					0	0	1	0	0
GRIK4	2900	broad.mit.edu	37	11	120732746	120732746	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120732746C>T	uc001pxn.2	+	9	1110	c.823C>T	c.(823-825)CAT>TAT	p.H275Y	GRIK4_uc009zav.1_Missense_Mutation_p.H275Y|GRIK4_uc009zaw.1_Missense_Mutation_p.H275Y|GRIK4_uc009zax.1_Missense_Mutation_p.H275Y	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	275	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	CAACCAATCCCATGCTTTCTT	0.522													89	211					0	0	1	0	0
TBCEL	219899	broad.mit.edu	37	11	120925967	120925967	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120925967C>T	uc009zay.2	+	5	740	c.662C>T	c.(661-663)TCA>TTA	p.S221L	TBCEL_uc001pxo.2_Missense_Mutation_p.S221L|TBCEL_uc001pxp.2_Missense_Mutation_p.S77L|TBCEL_uc001pxq.2_Intron	NM_001130047	NP_001123519	Q5QJ74	TBCEL_HUMAN	tubulin folding cofactor E-like	221	LRR 6.					cytoplasm|cytoskeleton				skin(1)	1		Breast(109;0.00526)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.89e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.121)		CCTGATGATTCATTGGCCAGG	0.433													25	48					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120980043	120980043	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120980043C>T	uc010rzo.1	+	3	322	c.322C>T	c.(322-324)CGA>TGA	p.R108*		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	108	NIDO.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CAATGGAATTCGAGGCGAGAT	0.507													24	46					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120984322	120984322	+	Missense_Mutation	SNP	G	A	A	rs150098939	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120984322G>A	uc010rzo.1	+	5	685	c.685G>A	c.(685-687)GAG>AAG	p.E229K		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	229	NIDO.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		AAGAACCCCCGAGATCGTGAA	0.478													10	69					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120989131	120989131	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120989131G>A	uc010rzo.1	+	6	907	c.907G>A	c.(907-909)GAG>AAG	p.E303K		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	303	VWFC.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TAGCCCCTACGAGGTGTGCGA	0.537													27	67					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120989342	120989342	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120989342C>T	uc010rzo.1	+	6	1118	c.1118C>T	c.(1117-1119)TCA>TTA	p.S373L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	373	VWFD 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CGCAGAGGTTCAGCCGTCTCC	0.537													11	102					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120996131	120996131	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120996131C>T	uc010rzo.1	+	7	1324	c.1324C>T	c.(1324-1326)CAG>TAG	p.Q442*		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	442	VWFD 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TTTTGATGGCCAGCACTACGC	0.483													91	390					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120998597	120998597	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:120998597C>T	uc010rzo.1	+	8	1911	c.1911C>T	c.(1909-1911)TTC>TTT	p.F637F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	637	TIL 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ACCAGGGCTTCGTCCTCAGCA	0.657													23	70					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121000554	121000554	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121000554G>A	uc010rzo.1	+	9	2575	c.2575G>A	c.(2575-2577)GAG>AAG	p.E859K		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	859	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CGCCAGTGACGAGTTCTGTCT	0.537													41	111					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121008394	121008394	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121008394G>A	uc010rzo.1	+	10	3206	c.3206G>A	c.(3205-3207)AGG>AAG	p.R1069K		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1069					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ACAGACAACAGGGTCCACTGC	0.572													9	46					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121008491	121008491	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121008491C>T	uc010rzo.1	+	10	3303	c.3303C>T	c.(3301-3303)ATC>ATT	p.I1101I		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1101	VWFD 3.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CCTCCTGCATCGTCTCAGGCT	0.587													20	30					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121016411	121016411	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121016411C>T	uc010rzo.1	+	11	3691	c.3691C>T	c.(3691-3693)CGG>TGG	p.R1231W		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1231	VWFD 3.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CACAGTCCCTCGGAGCATGCA	0.507													30	52					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121016536	121016536	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121016536G>A	uc010rzo.1	+	11	3816	c.3816G>A	c.(3814-3816)AAG>AAA	p.K1272K		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1272	VWFD 3.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GCTGGGTGAAGAGGGACACCT	0.592													25	103					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121061450	121061450	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121061450C>T	uc010rzo.1	+	23	6403	c.6403C>T	c.(6403-6405)CTT>TTT	p.L2135F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	2135					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		AGTCTGGACGCTTCTTCTCAT	0.383													15	32					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121358776	121358776	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121358776G>A	uc001pxx.2	+	4	644	c.564G>A	c.(562-564)TGG>TGA	p.W188*		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	188	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AGTACCTCTGGATCACGTTTG	0.517													133	335					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121384953	121384953	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121384953G>A	uc001pxx.2	+	8	1214	c.1134G>A	c.(1132-1134)GAG>GAA	p.E378E		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	378	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CAGAGGCAGAGGGGCTGAAGT	0.522													6	92					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121384967	121384967	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121384967C>T	uc001pxx.2	+	8	1228	c.1148C>T	c.(1147-1149)TCC>TTC	p.S383F		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	383	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CTGAAGTTCTCCCTGTCCTTG	0.542													19	62					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121391559	121391559	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121391559G>A	uc001pxx.2	+	9	1484	c.1404_splice	c.e9+1	p.E468_splice		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class						cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CAATTGTGAGGTATTGATGCT	0.398													11	24					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121393311	121393311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121393311C>T	uc001pxx.2	+	10	1501	c.1421C>T	c.(1420-1422)TCC>TTC	p.S474F		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	474	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CAGGGCTGTTCCCTTCATCTG	0.572													52	172					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121414256	121414256	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121414256G>A	uc001pxx.2	+	13	1766	c.1686_splice	c.e13-1	p.K562_splice		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class						cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CATTTGGGCAGATACAGTACC	0.358													32	93					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121414281	121414281	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121414281C>T	uc001pxx.2	+	13	1790	c.1710C>T	c.(1708-1710)ACC>ACT	p.T570T		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	570	Extracellular (Potential).|BNR 5.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AAGGGGAGACCTGGAAAACAT	0.418													26	111					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121414362	121414362	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121414362C>T	uc001pxx.2	+	13	1871	c.1791C>T	c.(1789-1791)TTC>TTT	p.F597F		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	597	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GCACTGTCTTCACCATCTTTG	0.512													47	106					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121420752	121420752	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121420752C>T	uc001pxx.2	+	15	2215	c.2135C>T	c.(2134-2136)CCT>CTT	p.P712L		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	712	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TCATACTCCCCTCCTGTGCCT	0.488													30	101					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121420796	121420796	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121420796G>A	uc001pxx.2	+	15	2259	c.2179G>A	c.(2179-2181)GGC>AGC	p.G727S		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	727	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GAGAACGAGAGGGTATGTATC	0.502													25	57					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121428052	121428052	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121428052C>T	uc001pxx.2	+	19	2681	c.2601C>T	c.(2599-2601)CTC>CTT	p.L867L		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	867	Extracellular (Potential).|LDL-receptor class B 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ACTTCCGACTCACAATCGTCA	0.527													34	106					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121430236	121430236	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121430236C>T	uc001pxx.2	+	21	2999	c.2919C>T	c.(2917-2919)ATC>ATT	p.I973I		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	973	Extracellular (Potential).|LDL-receptor class B 5.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AGAATGAAATCTACTGGGATG	0.478													25	81					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121440964	121440964	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121440964G>A	uc001pxx.2	+	23	3402	c.3322G>A	c.(3322-3324)GAT>AAT	p.D1108N		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1108	Extracellular (Potential).|LDL-receptor class A 1.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AGACATGAGCGATGAGAGAAA	0.507													34	83					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121478834	121478834	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121478834G>A	uc001pxx.2	+	38	5268	c.5188G>A	c.(5188-5190)GGA>AGA	p.G1730R	SORL1_uc010rzp.1_Missense_Mutation_p.G576R|SORL1_uc010rzq.1_Missense_Mutation_p.G345R	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1730	Extracellular (Potential).|Fibronectin type-III 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GACTAGTCGTGGAATAGGAAA	0.373													23	58					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121485641	121485642	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121485641_121485642GG>AA	uc001pxx.2	+	41	5561_5562	c.5481_5482GG>AA	c.(5479-5484)GGGGAT>GGAAAT	p.D1828N	SORL1_uc010rzp.1_Missense_Mutation_p.D674N|SORL1_uc010rzq.1_Missense_Mutation_p.D443N	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1828	Extracellular (Potential).|Fibronectin type-III 3.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CTGACTTGGGGGATAGCCCTCT	0.515													47	107					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121492935	121492935	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121492935G>A	uc001pxx.2	+	45	6209	c.6129G>A	c.(6127-6129)TGG>TGA	p.W2043*	SORL1_uc010rzp.1_Nonsense_Mutation_p.W889*|SORL1_uc010rzq.1_Nonsense_Mutation_p.W658*	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2043	Extracellular (Potential).|Fibronectin type-III 6.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TTCTGTTTTGGAAAAGCCTGG	0.353													20	55					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121498412	121498412	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121498412C>T	uc001pxx.2	+	47	6593	c.6513C>T	c.(6511-6513)GCC>GCT	p.A2171A	SORL1_uc010rzp.1_Silent_p.A1017A|SORL1_uc010rzq.1_Silent_p.A786A	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2171	Cytoplasmic (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GCTTCACCGCCTTCGCCAACA	0.607													14	37					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121498457	121498457	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:121498457C>T	uc001pxx.2	+	47	6638	c.6558C>T	c.(6556-6558)TTC>TTT	p.F2186F	SORL1_uc010rzp.1_Silent_p.F1032F|SORL1_uc010rzq.1_Silent_p.F801F	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2186	Cytoplasmic (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CCGCAATCTTCTCCTCTGGGG	0.607													7	38					0	0	1	0	0
MIR100	406892	broad.mit.edu	37	11	122023001	122023001	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:122023001G>A	hsa-mir-100|MI0000102	-			c.16G>A			LOC399959_uc009zba.2_Intron|uc001pyh.1_RNA																	0						CGGATCTACGGGTTTGTGGCA	0.413													21	48					0	0	1	0	0
CRTAM	56253	broad.mit.edu	37	11	122720888	122720888	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:122720888C>T	uc001pyj.2	+	2	159	c.159C>T	c.(157-159)CCC>CCT	p.P53P		NM_019604	NP_062550	O95727	CRTAM_HUMAN	class-I MHC-restricted T cell associated	53	Ig-like V-type.|Extracellular (Potential).				cell recognition|detection of tumor cell|positive regulation of cytokine secretion|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	integral to membrane|plasma membrane	receptor binding			ovary(1)	1		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.28e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		GGCTGACCCCCTCAGGGTTCA	0.483													24	81					0	0	1	0	0
CRTAM	56253	broad.mit.edu	37	11	122738187	122738187	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:122738187C>T	uc001pyj.2	+	8	888	c.888C>T	c.(886-888)TTC>TTT	p.F296F	CRTAM_uc001pyk.2_Silent_p.F97F	NM_019604	NP_062550	O95727	CRTAM_HUMAN	class-I MHC-restricted T cell associated	296	Helical; (Potential).				cell recognition|detection of tumor cell|positive regulation of cytokine secretion|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	integral to membrane|plasma membrane	receptor binding			ovary(1)	1		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.28e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		TGGTGTCCTTCCTCATTTTCA	0.438													12	43					0	0	1	0	0
C11orf63	79864	broad.mit.edu	37	11	122756816	122756816	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:122756816G>A	uc001pym.2	+	2	556	c.259G>A	c.(259-261)GAG>AAG	p.E87K	C11orf63_uc001pyl.1_Missense_Mutation_p.E87K	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	87										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		AAGCCTGCACGAGATGGAAGA	0.537													31	105					0	0	1	0	0
C11orf63	79864	broad.mit.edu	37	11	122774731	122774731	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:122774731C>T	uc001pym.2	+	3	740	c.443C>T	c.(442-444)CCG>CTG	p.P148L	C11orf63_uc001pyl.1_Missense_Mutation_p.P148L	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	148										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		GAAGCGTTGCCGGAGTCCACG	0.527													49	143					0	0	1	0	0
C11orf63	79864	broad.mit.edu	37	11	122774735	122774735	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:122774735G>A	uc001pym.2	+	3	744	c.447G>A	c.(445-447)GAG>GAA	p.E149E	C11orf63_uc001pyl.1_Silent_p.E149E	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	149										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		CGTTGCCGGAGTCCACGGACA	0.522													55	140					0	0	1	0	0
C11orf63	79864	broad.mit.edu	37	11	122795646	122795646	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:122795646G>A	uc001pym.2	+	4	1203	c.906G>A	c.(904-906)CAG>CAA	p.Q302Q		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	302										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		CGTCTATTCAGAATGCCAAGG	0.323													18	92					0	0	1	0	0
C11orf63	79864	broad.mit.edu	37	11	122805572	122805572	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:122805572C>T	uc001pym.2	+	5	1720	c.1423C>T	c.(1423-1425)CAA>TAA	p.Q475*		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	475										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		ACACAAAGACCAAGAAGAGAA	0.398													49	138					0	0	1	0	0
LOC341056	341056	broad.mit.edu	37	11	122888917	122888917	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:122888917G>A	uc010rzt.1	+	1		c.644G>A				NR_027288				full-length cDNA clone CS0DC021YJ17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0						AGTAGAAGATGGGCCTGATAC	0.433													36	110					0	0	1	0	0
GRAMD1B	57476	broad.mit.edu	37	11	123484269	123484269	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123484269C>T	uc001pyx.2	+	15	2030	c.1701C>T	c.(1699-1701)CCC>CCT	p.P567P	GRAMD1B_uc001pyw.2_Silent_p.P574P|GRAMD1B_uc010rzw.1_Silent_p.P527P|GRAMD1B_uc010rzx.1_Silent_p.P527P|GRAMD1B_uc001pyy.2_Silent_p.P258P	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	567						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		GGAAGCGTCCCCATGCCCACC	0.577													16	33					0	0	1	0	0
GRAMD1B	57476	broad.mit.edu	37	11	123485474	123485474	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123485474T>A	uc001pyx.2	+	16	2149	c.1820T>A	c.(1819-1821)ATC>AAC	p.I607N	GRAMD1B_uc001pyw.2_Missense_Mutation_p.I614N|GRAMD1B_uc010rzw.1_Missense_Mutation_p.I567N|GRAMD1B_uc010rzx.1_Missense_Mutation_p.I567N|GRAMD1B_uc001pyy.2_Missense_Mutation_p.I298N	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	607						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		ACGCGGCATATCCCGGAGGAC	0.547													9	25					0	0	1	0	0
SCN3B	55800	broad.mit.edu	37	11	123504887	123504887	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123504887C>T	uc001pza.1	-	6	1019	c.612G>A	c.(610-612)GAG>GAA	p.E204E	SCN3B_uc001pzb.1_Silent_p.E204E	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	204	Cytoplasmic (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		TCTCCTTGTTCTCAGATGGGA	0.537													18	42					0	0	1	0	0
SCN3B	55800	broad.mit.edu	37	11	123508947	123508947	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123508947C>T	uc001pza.1	-	5	938	c.531G>A	c.(529-531)ATG>ATA	p.M177I	SCN3B_uc001pzb.1_Missense_Mutation_p.M177I	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	177	Helical; (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		AGCAATATATCATCTCGATGA	0.408													15	57					0	0	1	0	0
SCN3B	55800	broad.mit.edu	37	11	123513287	123513287	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123513287G>A	uc001pza.1	-	4	719	c.312C>T	c.(310-312)TCC>TCT	p.S104S	SCN3B_uc001pzb.1_Silent_p.S104S	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	104	Ig-like C2-type.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		GCACAGTGATGGACACGTCCT	0.567													23	65					0	0	1	0	0
SCN3B	55800	broad.mit.edu	37	11	123516367	123516367	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123516367C>T	uc001pza.1	-	3	554	c.147G>A	c.(145-147)ATG>ATA	p.M49I	SCN3B_uc001pzb.1_Missense_Mutation_p.M49I	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	49	Ig-like C2-type.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		CCTCTCTCTTCATGCAGGAGA	0.577													27	133					0	0	1	0	0
SCN3B	55800	broad.mit.edu	37	11	123524485	123524485	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123524485G>A	uc001pza.1	-	2	432	c.25C>T	c.(25-27)CCC>TCC	p.P9S	SCN3B_uc001pzb.1_Missense_Mutation_p.P9S	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	9					axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		GAAGCCAGGGGAAACAATCTA	0.502													51	207					0	0	1	0	0
ZNF202	7753	broad.mit.edu	37	11	123596828	123596828	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123596828G>A	uc001pzd.1	-	9	2224	c.1824C>T	c.(1822-1824)CTC>CTT	p.L608L	ZNF202_uc001pzc.1_Silent_p.L384L|ZNF202_uc001pze.1_Silent_p.L608L|ZNF202_uc001pzf.1_Silent_p.L608L	NM_003455	NP_003446	O95125	ZN202_HUMAN	zinc finger protein 202	608	C2H2-type 7.				lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.03)		GATGCCTGACGAGGTGGTCCC	0.552													28	81					0	0	1	0	0
ZNF202	7753	broad.mit.edu	37	11	123600430	123600430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123600430G>A	uc001pzd.1	-	5	906	c.506C>T	c.(505-507)TCG>TTG	p.S169L	ZNF202_uc001pzc.1_5'UTR|ZNF202_uc001pze.1_Missense_Mutation_p.S169L|ZNF202_uc001pzf.1_Missense_Mutation_p.S169L	NM_003455	NP_003446	O95125	ZN202_HUMAN	zinc finger protein 202	169					lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.03)		CTCGGGGGTCGAGCTTTGCAC	0.597													7	36					0	0	1	0	0
OR6X1	390260	broad.mit.edu	37	11	123624347	123624347	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123624347C>T	uc010rzy.1	-	1	880	c.880G>A	c.(880-882)GAG>AAG	p.E294K		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CCCTTCACCTCCTTGTTTCTA	0.403													57	142					0	0	1	0	0
OR6X1	390260	broad.mit.edu	37	11	123624387	123624387	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123624387G>A	uc010rzy.1	-	1	840	c.840C>T	c.(838-840)ACC>ACT	p.T280T		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TCAGAAGGGGGGTGAGGATAG	0.443													37	99					0	0	1	0	0
OR6X1	390260	broad.mit.edu	37	11	123624451	123624451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123624451C>T	uc010rzy.1	-	1	776	c.776G>A	c.(775-777)AGA>AAA	p.R259K		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	259	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TGCTGTGGGTCTTAGGTACAT	0.463													20	68					0	0	1	0	0
OR6X1	390260	broad.mit.edu	37	11	123624553	123624553	+	Missense_Mutation	SNP	C	T	T	rs140203672	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123624553C>T	uc010rzy.1	-	1	674	c.674G>A	c.(673-675)CGA>CAA	p.R225Q		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TGAAGGAATTCGTAGGATTGC	0.473													38	76					0	0	1	0	0
OR6X1	390260	broad.mit.edu	37	11	123624786	123624786	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123624786C>T	uc010rzy.1	-	1	441	c.441G>A	c.(439-441)TGG>TGA	p.W147*		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		AGCCCACCACCCAGGAGCTCA	0.512													21	83					0	0	1	0	0
OR6M1	390261	broad.mit.edu	37	11	123676172	123676172	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123676172C>T	uc010rzz.1	-	1	886	c.886G>A	c.(886-888)GAA>AAA	p.E296K		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		CTCAACACTTCCTGTACCTTC	0.408													38	124					0	0	1	0	0
OR6M1	390261	broad.mit.edu	37	11	123676399	123676399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123676399G>A	uc010rzz.1	-	1	659	c.659C>T	c.(658-660)TCT>TTT	p.S220F		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		CAGGATGGTAGAAATTATGTA	0.488													12	28					0	0	1	0	0
TMEM225	338661	broad.mit.edu	37	11	123754798	123754798	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123754798G>A	uc001pzi.2	-	3	655	c.447C>T	c.(445-447)TTC>TTT	p.F149F		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	149	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						CAGACAAGAAGAAAACATTTA	0.433													16	91					0	0	1	0	0
TMEM225	338661	broad.mit.edu	37	11	123755273	123755273	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123755273C>T	uc001pzi.2	-	2	460	c.252G>A	c.(250-252)CTG>CTA	p.L84L		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	84	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						ATTTCATACCCAGGATTAAGT	0.423													34	67					0	0	1	0	0
OR8D4	338662	broad.mit.edu	37	11	123777308	123777309	+	Missense_Mutation	DNP	CC	TT	TT	rs79929702		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123777308_123777309CC>TT	uc010saa.1	+	1	170_171	c.170_171CC>TT	c.(169-171)ACC>ATT	p.T57I		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		CAACTTCATACCCCCATGTACT	0.401													42	147					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810368	123810368	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123810368G>A	uc001pzk.1	+	1	45	c.45G>A	c.(43-45)CTG>CTA	p.L15L		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TTGTTCTACTGGGGCTCTCTC	0.418													30	84					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810601	123810601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123810601C>T	uc001pzk.1	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CCTACCATTTCCTTTGGTGGA	0.468													29	93					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123811000	123811000	+	Missense_Mutation	SNP	G	A	A	rs142766960		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123811000G>A	uc001pzk.1	+	1	677	c.677G>A	c.(676-678)CGA>CAA	p.R226Q		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GTCATGCTCCGAAGCCACTCA	0.507													68	253					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123813687	123813687	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123813687G>A	uc010sab.1	-	1	859	c.859C>T	c.(859-861)CCA>TCA	p.P287S		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		AAGATGAATGGGTTCAAGAGG	0.522													26	227					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123813752	123813752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123813752G>A	uc010sab.1	-	1	794	c.794C>T	c.(793-795)GCT>GTT	p.A265V		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TTTGGACTGAGCCTCTGACAT	0.507													43	139					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123813799	123813799	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123813799G>A	uc010sab.1	-	1	747	c.747C>T	c.(745-747)GTC>GTT	p.V249V		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CATAGATGATGACCACCACTG	0.512													31	87					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123814126	123814126	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123814126G>A	uc010sab.1	-	1	420	c.420C>T	c.(418-420)GTC>GTT	p.V140V		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GTTGGGAACAGACATGGCCAT	0.567													12	18					0	0	1	0	0
OR10S1	219873	broad.mit.edu	37	11	123847485	123847485	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123847485C>T	uc001pzm.1	-	1	914	c.914G>A	c.(913-915)CGG>CAG	p.R305Q		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CTCCTTGTTCCGCAAAGTGTA	0.532													54	89					0	0	1	0	0
OR10S1	219873	broad.mit.edu	37	11	123847868	123847869	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123847868_123847869GG>AA	uc001pzm.1	-	1	530_531	c.530_531CC>TT	c.(529-531)ACC>ATT	p.T177I		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GCAGGCGGAAGGTGAGGGAGGT	0.559													7	67					0	0	1	0	0
OR10S1	219873	broad.mit.edu	37	11	123848171	123848171	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123848171C>T	uc001pzm.1	-	1	228	c.228G>A	c.(226-228)CTG>CTA	p.L76L		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	76	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		AGAGGTGCCCCAGGAAGTGGT	0.547													12	36					0	0	1	0	0
OR10S1	219873	broad.mit.edu	37	11	123848336	123848336	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123848336C>T	uc001pzm.1	-	1	63	c.63G>A	c.(61-63)GTG>GTA	p.V21V		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		AGTGGCTCACCACAGTCTGGT	0.488													31	76					0	0	1	0	0
OR10S1	219873	broad.mit.edu	37	11	123848369	123848369	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123848369C>T	uc001pzm.1	-	1	30	c.30G>A	c.(28-30)ATG>ATA	p.M10I		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TTGTCATGGTCATCTTCTCAC	0.468													44	81					0	0	1	0	0
OR10G4	390264	broad.mit.edu	37	11	123886286	123886286	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123886286C>T	uc010sac.1	+	1	5	c.5C>T	c.(4-6)TCC>TTC	p.S2F		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GAAGAAATGTCCAACGCCAGC	0.512													17	100					0	0	1	0	0
OR10G4	390264	broad.mit.edu	37	11	123886858	123886858	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123886858G>A	uc010sac.1	+	1	577	c.577G>A	c.(577-579)GCC>ACC	p.A193T		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		AGACACCTCAGCCAACGTGAT	0.527													93	147					0	0	1	0	0
OR10G4	390264	broad.mit.edu	37	11	123887067	123887067	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123887067C>T	uc010sac.1	+	1	786	c.786C>T	c.(784-786)GGC>GGT	p.G262G		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TGAGGCCAGGCTCCATGGATG	0.522													15	60					0	0	1	0	0
OR10G4	390264	broad.mit.edu	37	11	123887120	123887120	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123887120C>T	uc010sac.1	+	1	839	c.839C>T	c.(838-840)CCC>CTC	p.P280L		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GTGCTGACGCCCCTTCTCAAC	0.463													22	89					0	0	1	0	0
OR10G9	219870	broad.mit.edu	37	11	123894517	123894517	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123894517C>T	uc010sad.1	+	1	798	c.798C>T	c.(796-798)GTC>GTT	p.V266V		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CCAGGGACGTCGTGGATGGAG	0.512													59	127					0	0	1	0	0
OR10G8	219869	broad.mit.edu	37	11	123901221	123901221	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123901221C>T	uc001pzp.1	+	1	892	c.892C>T	c.(892-894)CTG>TTG	p.L298L		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GAAGAAAGCTCTGTTGAAGCT	0.343													39	78					0	0	1	0	0
OR10G8	219869	broad.mit.edu	37	11	123901226	123901226	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123901226G>A	uc001pzp.1	+	1	897	c.897G>A	c.(895-897)TTG>TTA	p.L299L		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AAGCTCTGTTGAAGCTGAAAG	0.333													30	81					0	0	1	0	0
OR10G7	390265	broad.mit.edu	37	11	123908902	123908902	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123908902C>T	uc001pzq.1	-	1	807	c.807G>A	c.(805-807)GGG>GGA	p.G269G		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	269	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CGGCCACAACCCCATGCAAGG	0.512													29	64					0	0	1	0	0
OR10G7	390265	broad.mit.edu	37	11	123909307	123909307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123909307C>T	uc001pzq.1	-	1	402	c.402G>A	c.(400-402)ATG>ATA	p.M134I		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GCCCAGTCATCATGTTGGTGT	0.542													67	206					0	0	1	0	0
OR10G7	390265	broad.mit.edu	37	11	123909381	123909381	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123909381C>T	uc001pzq.1	-	1	328	c.328G>A	c.(328-330)GAG>AAG	p.E110K		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGGAAACACTCGGTGCTCCCC	0.552													53	81					0	0	1	0	0
VWA5A	4013	broad.mit.edu	37	11	123989367	123989367	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:123989367C>T	uc001pzu.2	+	6	806	c.597C>T	c.(595-597)TGC>TGT	p.C199C	VWA5A_uc001pzr.2_Silent_p.C199C|VWA5A_uc001pzs.2_Silent_p.C199C|VWA5A_uc010sae.1_Silent_p.C215C|VWA5A_uc001pzt.2_Silent_p.C199C	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	199										upper_aerodigestive_tract(1)|ovary(1)	2						AATCCAACTGCCCCTTGAGTC	0.498													12	53					0	0	1	0	0
VWA5A	4013	broad.mit.edu	37	11	124007847	124007847	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124007847C>T	uc001pzu.2	+	15	1960	c.1751C>T	c.(1750-1752)TCC>TTC	p.S584F	VWA5A_uc001pzt.2_Missense_Mutation_p.S584F	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	584										upper_aerodigestive_tract(1)|ovary(1)	2						GTCATAAGCTCCTTCACAGCT	0.502													17	60					0	0	1	0	0
VWA5A	4013	broad.mit.edu	37	11	124012331	124012331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124012331C>T	uc001pzu.2	+	16	2115	c.1906C>T	c.(1906-1908)CGT>TGT	p.R636C	VWA5A_uc001pzt.2_Missense_Mutation_p.R636C	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	636										upper_aerodigestive_tract(1)|ovary(1)	2						ACACTCTGACCGTCCTCCTTC	0.468													50	107					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124095411	124095411	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124095411C>T	uc010saf.1	+	1	14	c.14C>T	c.(13-15)TCC>TTC	p.S5F		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	5						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GTTTTTCTTTCCTCCGTAGAA	0.453													9	19					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124095622	124095622	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124095622C>T	uc010saf.1	+	1	225	c.225C>T	c.(223-225)TTC>TTT	p.F75F		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	75						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TGTACTATTTCCTCAGTGGTC	0.463													65	155					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124095709	124095709	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124095709C>T	uc010saf.1	+	1	312	c.312C>T	c.(310-312)ATC>ATT	p.I104I		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	104						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		AGAAGAACATCATCTCCTACC	0.433													44	147					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124095744	124095744	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124095744T>G	uc010saf.1	+	1	347	c.347T>G	c.(346-348)TTC>TGC	p.F116C		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	116						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		CAGCTTTACTTCTTCCTCATT	0.448													31	158					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124096194	124096194	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124096194G>A	uc010saf.1	+	1	797	c.797G>A	c.(796-798)GGG>GAG	p.G266E		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	266						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GTTTTCTTTGGGTCTGCAGCA	0.507													32	42					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124180003	124180003	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124180003G>A	uc010sag.1	-	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TGTAGAGGATGAAGGCATAGG	0.507													16	32					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124180280	124180280	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124180280C>T	uc010sag.1	-	1	383	c.383G>A	c.(382-384)AGC>AAC	p.S128N		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	128	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		AAGCAGTGGGCTACAGATGGC	0.498													6	26					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124180489	124180489	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124180489G>A	uc010sag.1	-	1	174	c.174C>T	c.(172-174)CCC>CCT	p.P58P		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		AATAGTACATGGGGGTGTGAA	0.483													18	73					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124180566	124180566	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124180566C>T	uc010sag.1	-	1	97	c.97G>A	c.(97-99)GGA>AGA	p.G33R		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ACATAGATTCCCAGGAACAGG	0.483													45	106					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124180569	124180569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124180569G>A	uc010sag.1	-	1	94	c.94C>T	c.(94-96)CTG>TTG	p.L32L		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TAGATTCCCAGGAACAGGAGG	0.483													18	137					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124180579	124180579	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124180579G>A	uc010sag.1	-	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GGAACAGGAGGAAGAGGGGCA	0.473													30	125					0	0	1	0	0
OR8D2	283160	broad.mit.edu	37	11	124189733	124189733	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124189733C>T	uc010sah.1	-	1	361	c.361G>A	c.(361-363)GAC>AAC	p.D121N		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		ACATAACGGTCATATTCCATG	0.408													24	51					0	0	1	0	0
OR8D2	283160	broad.mit.edu	37	11	124189830	124189830	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124189830C>T	uc010sah.1	-	1	264	c.264G>A	c.(262-264)GAG>GAA	p.E88E		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		TAATGTTCTCCTCTGGAACAA	0.388													21	49					0	0	1	0	0
OR8D2	283160	broad.mit.edu	37	11	124189996	124189996	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124189996C>T	uc010sah.1	-	1	98	c.98G>A	c.(97-99)GGA>GAA	p.G33E		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		CACATATATTCCAAGGAACAG	0.463													33	113					0	0	1	0	0
OR8B2	26595	broad.mit.edu	37	11	124252337	124252337	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124252337C>T	uc010sai.1	-	1	903	c.903G>A	c.(901-903)AGG>AGA	p.R301R		NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		TCAGAGCTTTCCTCAGTGCAA	0.348													32	85					0	0	1	0	0
OR8B2	26595	broad.mit.edu	37	11	124253009	124253009	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124253009G>A	uc010sai.1	-	1	231	c.231C>T	c.(229-231)TTC>TTT	p.F77F	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	77	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		TTTTGGGAGTGAAAACAGAGG	0.388													48	115					0	0	1	0	0
OR8B2	26595	broad.mit.edu	37	11	124253036	124253036	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124253036G>A	uc010sai.1	-	1	204	c.204C>T	c.(202-204)TTC>TTT	p.F68F	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AGAGATCAATGAAGGAGAGAT	0.408													51	142					0	0	1	0	0
OR8B3	390271	broad.mit.edu	37	11	124267101	124267101	+	Silent	SNP	G	A	A	rs140121900	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124267101G>A	uc010saj.1	-	1	147	c.147C>T	c.(145-147)TTC>TTT	p.F49F	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AATTTAGACCGAAAAGAATGA	0.418													69	92					0	0	1	0	0
OR8B4	283162	broad.mit.edu	37	11	124294023	124294023	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124294023G>A	uc010sak.1	-	1	745	c.745C>T	c.(745-747)CTG>TTG	p.L249L		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CCAAAAAACAGAGCAACAGCA	0.458													7	64					0	0	1	0	0
OR8B4	283162	broad.mit.edu	37	11	124294729	124294729	+	Silent	SNP	G	A	A	rs151066825		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124294729G>A	uc010sak.1	-	1	39	c.39C>T	c.(37-39)ATC>ATT	p.I13I		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		ATCCCACAAGGATAAACTCAG	0.488													13	51					0	0	1	0	0
OR8B4	283162	broad.mit.edu	37	11	124294748	124294748	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124294748G>A	uc010sak.1	-	1	20	c.20C>T	c.(19-21)TCC>TTC	p.S7F		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		AGTCACTGAGGAGCTGTTTCT	0.483													10	44					0	0	1	0	0
OR8B8	26493	broad.mit.edu	37	11	124310178	124310178	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124310178C>T	uc010sal.1	-	1	804	c.804G>A	c.(802-804)ATG>ATA	p.M268I		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		TGCCCTGGTTCATAGCTAAAA	0.453													25	48					0	0	1	0	0
OR8B12	219858	broad.mit.edu	37	11	124412747	124412747	+	Silent	SNP	C	T	T	rs61745404	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124412747C>T	uc010sam.1	-	1	804	c.804G>A	c.(802-804)GAG>GAA	p.E268E		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		CTTTCCCTTGCTCGAGGGGCA	0.438													24	73					0	0	1	0	0
OR8B12	219858	broad.mit.edu	37	11	124413062	124413062	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124413062C>T	uc010sam.1	-	1	489	c.489G>A	c.(487-489)ATG>ATA	p.M163I		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		AGGTCAGGTTCATTATGCTTC	0.502													33	81					0	0	1	0	0
OR8B12	219858	broad.mit.edu	37	11	124413290	124413290	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124413290C>T	uc010sam.1	-	1	261	c.261G>A	c.(259-261)AGG>AGA	p.R87R		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TGATGTTCTTCCTTGAGACAA	0.433													24	81					0	0	1	0	0
OR8B12	219858	broad.mit.edu	37	11	124413483	124413483	+	Missense_Mutation	SNP	C	T	T	rs140680123		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124413483C>T	uc010sam.1	-	1	68	c.68G>A	c.(67-69)CGG>CAG	p.R23Q		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		GAGGGGGATCCGCAGTCCCGG	0.547													12	135					0	0	1	0	0
OR8A1	390275	broad.mit.edu	37	11	124439967	124439967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124439967G>A	uc010san.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		GCCTTTTAATGGGGTTCTTGT	0.532													6	53					0	0	1	0	0
OR8A1	390275	broad.mit.edu	37	11	124440076	124440076	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124440076G>A	uc010san.1	+	1	112	c.112G>A	c.(112-114)GCA>ACA	p.A38T		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	38	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		AACGAAGAGAGCAGACCTCCA	0.527													26	84					0	0	1	0	0
OR8A1	390275	broad.mit.edu	37	11	124440515	124440515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124440515C>T	uc010san.1	+	1	551	c.551C>T	c.(550-552)CCC>CTC	p.P184L		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		TTAAAACTGCCCTATTGTGAG	0.483													30	77					0	0	1	0	0
OR8A1	390275	broad.mit.edu	37	11	124440711	124440711	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124440711G>A	uc010san.1	+	1	747	c.747G>A	c.(745-747)GGG>GGA	p.G249G		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	249	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		CCACAGAGGGGAGATCCAAAG	0.478													28	89					0	0	1	0	0
PANX3	116337	broad.mit.edu	37	11	124489364	124489364	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124489364G>A	uc001qah.2	+	4	712	c.712G>A	c.(712-714)GAA>AAA	p.E238K		NM_052959	NP_443191	Q96QZ0	PANX3_HUMAN	pannexin 3	238	Extracellular (Potential).				protein hexamerization	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0219)		CTTCTTCCAGGAAGAATTCAG	0.498													15	36					0	0	1	0	0
PANX3	116337	broad.mit.edu	37	11	124489501	124489501	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124489501G>A	uc001qah.2	+	4	849	c.849G>A	c.(847-849)TTG>TTA	p.L283L		NM_052959	NP_443191	Q96QZ0	PANX3_HUMAN	pannexin 3	283	Helical; (Potential).				protein hexamerization	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0219)		ACACCATATTGGTTCCAGTGA	0.453													23	66					0	0	1	0	0
SIAE	54414	broad.mit.edu	37	11	124530644	124530644	+	Silent	SNP	G	A	A	rs147638217		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124530644G>A	uc001qan.2	-	3	398	c.285C>T	c.(283-285)TTC>TTT	p.F95F	SIAE_uc001qao.1_Silent_p.F95F	NM_170601	NP_733746	Q9HAT2	SIAE_HUMAN	sialate O-acetylesterase precursor	95						extracellular region|lysosome	carboxylesterase activity|sialate O-acetylesterase activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0243)		CCATCACTTCGAAAGGTCCTC	0.443													80	183					0	0	1	0	0
SPA17	53340	broad.mit.edu	37	11	124551353	124551353	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124551353G>A	uc001qap.2	+	3	359	c.223G>A	c.(223-225)GAG>AAG	p.E75K		NM_017425	NP_059121	Q15506	SP17_HUMAN	sperm autoantigenic protein 17	75					binding of sperm to zona pellucida|ciliary or flagellar motility|signal transduction|spermatogenesis	cytoplasm|flagellum|membrane|motile cilium|primary cilium	cAMP-dependent protein kinase regulator activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0223)		TCATGCATTCGAGGTATGGTC	0.378													30	50					0	0	1	0	0
ESAM	90952	broad.mit.edu	37	11	124623552	124623552	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124623552G>A	uc001qav.3	-	7	1336	c.1163C>T	c.(1162-1164)TCT>TTT	p.S388F	VSIG2_uc001qas.2_5'Flank|VSIG2_uc001qat.2_5'Flank|ESAM_uc010sao.1_Intron|ESAM_uc001qau.3_Missense_Mutation_p.S315F|ESAM_uc001qaw.3_RNA|ESAM_uc001qax.3_RNA|ESAM_uc009zbi.2_3'UTR	NM_138961	NP_620411	Q96AP7	ESAM_HUMAN	endothelial cell adhesion molecule precursor	388	Cytoplasmic (Potential).				blood coagulation|leukocyte migration	adherens junction|integral to membrane|tight junction					0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.022)		TCATACCAGAGAGCCAGCTTG	0.557													27	49					0	0	1	0	0
ESAM	90952	broad.mit.edu	37	11	124624623	124624623	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124624623G>A	uc001qav.3	-	5	817	c.644C>T	c.(643-645)TCG>TTG	p.S215L	VSIG2_uc001qas.2_5'Flank|VSIG2_uc001qat.2_5'Flank|ESAM_uc010sao.1_Missense_Mutation_p.S36L|ESAM_uc001qau.3_Missense_Mutation_p.S142L|ESAM_uc001qaw.3_RNA|ESAM_uc001qax.3_RNA|ESAM_uc009zbi.2_Missense_Mutation_p.S215L	NM_138961	NP_620411	Q96AP7	ESAM_HUMAN	endothelial cell adhesion molecule precursor	215	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|leukocyte migration	adherens junction|integral to membrane|tight junction					0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.022)		CATGGAAGACGAAAGGTTGGT	0.483													51	131					0	0	1	0	0
ESAM	90952	broad.mit.edu	37	11	124626255	124626255	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124626255G>A	uc001qav.3	-	4	628	c.455C>T	c.(454-456)CCT>CTT	p.P152L	ESAM_uc010sao.1_Intron|ESAM_uc001qau.3_Missense_Mutation_p.P79L|ESAM_uc001qaw.3_RNA|ESAM_uc001qax.3_Intron|ESAM_uc009zbi.2_Missense_Mutation_p.P152L	NM_138961	NP_620411	Q96AP7	ESAM_HUMAN	endothelial cell adhesion molecule precursor	152	Extracellular (Potential).				blood coagulation|leukocyte migration	adherens junction|integral to membrane|tight junction					0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.022)		AGGAGCTGGAGGAACTGGGCA	0.597													3	12					0	0	1	0	0
C11orf61	79684	broad.mit.edu	37	11	124637184	124637184	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124637184G>A	uc001qba.1	-	4	1591	c.1568C>T	c.(1567-1569)CCC>CTC	p.P523L	C11orf61_uc001qaz.1_Missense_Mutation_p.P471L|C11orf61_uc010sap.1_Missense_Mutation_p.P243L|C11orf61_uc001qay.1_Missense_Mutation_p.P293L	NM_024631	NP_078907	Q6P1R3	CK061_HUMAN	hypothetical protein LOC79684	523											0	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0079)		GATGGATTTGGGGGAAACTCC	0.408													45	105					0	0	1	0	0
C11orf61	79684	broad.mit.edu	37	11	124637768	124637768	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124637768G>A	uc001qba.1	-	4	1007	c.984C>T	c.(982-984)ATC>ATT	p.I328I	C11orf61_uc001qaz.1_Silent_p.I276I|C11orf61_uc010sap.1_Silent_p.I48I|C11orf61_uc001qay.1_Silent_p.I98I	NM_024631	NP_078907	Q6P1R3	CK061_HUMAN	hypothetical protein LOC79684	328											0	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0079)		AATGGTAACGGATATCCTCTT	0.468													40	118					0	0	1	0	0
ROBO3	64221	broad.mit.edu	37	11	124740999	124740999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124740999C>T	uc001qbc.2	+	7	1315	c.1123C>T	c.(1123-1125)CCA>TCA	p.P375S		NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	375	Ig-like C2-type 4.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		AGGAAACCCCCCACCTGCCAT	0.632													11	53					0	0	1	0	0
ROBO3	64221	broad.mit.edu	37	11	124745472	124745472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124745472C>T	uc001qbc.2	+	15	2504	c.2312C>T	c.(2311-2313)CCC>CTC	p.P771L	ROBO3_uc010saq.1_5'Flank|ROBO3_uc001qbd.2_5'Flank|ROBO3_uc010sar.1_5'Flank|ROBO3_uc001qbe.2_5'Flank|ROBO3_uc001qbf.1_5'Flank	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	771	Fibronectin type-III 3.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		CCCAGTGGCCCCCCACAGGGA	0.612													6	26					0	0	1	0	0
ROBO3	64221	broad.mit.edu	37	11	124750348	124750348	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124750348C>T	uc001qbc.2	+	27	4185	c.3993C>T	c.(3991-3993)TTC>TTT	p.F1331F	ROBO3_uc001qbd.2_Silent_p.F256F|ROBO3_uc010sar.1_Silent_p.F380F|ROBO3_uc001qbe.2_Silent_p.F256F|ROBO3_uc001qbf.1_Silent_p.F215F	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	1331	Cytoplasmic (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		GACCAAGCTTCCTGTCCCGGG	0.622													7	21					0	0	1	0	0
ROBO4	54538	broad.mit.edu	37	11	124756397	124756397	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124756397G>A	uc001qbg.2	-	16	2897	c.2757C>T	c.(2755-2757)TTC>TTT	p.F919F	ROBO4_uc010sas.1_Silent_p.F774F|ROBO4_uc001qbh.2_3'UTR|ROBO4_uc001qbi.2_Silent_p.F477F	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	919					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		GCTCTAGACCGAAACCAAAGC	0.572													29	54					0	0	1	0	0
ROBO4	54538	broad.mit.edu	37	11	124756615	124756615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124756615C>T	uc001qbg.2	-	16	2679	c.2539G>A	c.(2539-2541)GGA>AGA	p.G847R	ROBO4_uc010sas.1_Missense_Mutation_p.G702R|ROBO4_uc001qbh.2_3'UTR|ROBO4_uc001qbi.2_Missense_Mutation_p.G405R	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	847					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		CCCACCCCTCCTCCAGTCCTG	0.662													16	42					0	0	1	0	0
ROBO4	54538	broad.mit.edu	37	11	124756633	124756633	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124756633C>T	uc001qbg.2	-	16	2661	c.2521G>A	c.(2521-2523)GAC>AAC	p.D841N	ROBO4_uc010sas.1_Missense_Mutation_p.D696N|ROBO4_uc001qbh.2_3'UTR|ROBO4_uc001qbi.2_Missense_Mutation_p.D399N	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	841					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		CTGCCCATGTCCGTGAACTCT	0.652													13	41					0	0	1	0	0
ROBO4	54538	broad.mit.edu	37	11	124757009	124757009	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124757009G>A	uc001qbg.2	-	15	2439	c.2299C>T	c.(2299-2301)CTC>TTC	p.L767F	ROBO4_uc010sas.1_Missense_Mutation_p.L622F|ROBO4_uc001qbh.2_Missense_Mutation_p.L657F|ROBO4_uc001qbi.2_Missense_Mutation_p.L325F	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	767	Pro/Ser-rich.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		GGGCCAGAGAGGGAAGAGGCC	0.672													11	47					0	0	1	0	0
ROBO4	54538	broad.mit.edu	37	11	124761637	124761637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124761637C>T	uc001qbg.2	-	11	1749	c.1609G>A	c.(1609-1611)GAC>AAC	p.D537N	ROBO4_uc010sas.1_Missense_Mutation_p.D392N|ROBO4_uc001qbh.2_Missense_Mutation_p.D427N|ROBO4_uc001qbi.2_Missense_Mutation_p.D95N|ROBO4_uc010sat.1_Missense_Mutation_p.D95N	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	537					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		CTGCTCAGGTCCCGAGAGCCA	0.647													16	32					0	0	1	0	0
ROBO4	54538	broad.mit.edu	37	11	124766906	124766906	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124766906C>T	uc001qbg.2	-	2	462	c.322G>A	c.(322-324)GAC>AAC	p.D108N	ROBO4_uc010sas.1_5'UTR|ROBO4_uc001qbh.2_Intron|ROBO4_uc001qbi.2_5'Flank|ROBO4_uc010sat.1_5'Flank	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	108	Ig-like C2-type 1.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		ACACCCAGGTCTGTGGACAGG	0.672													12	29					0	0	1	0	0
HEPN1	641654	broad.mit.edu	37	11	124789726	124789726	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124789726G>A	uc001qbj.1	+	1	581	c.80G>A	c.(79-81)GGA>GAA	p.G27E	HEPACAM_uc009zbj.2_3'UTR|HEPACAM_uc001qbk.2_3'UTR	NM_001037558	NP_001032647	Q6WQI6	HEPN1_HUMAN	HEPACAM opposite strand 1	27						cytoplasm					0	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0287)		GGGATGCAAGGACCCTTGGAG	0.507													5	68					0	0	1	0	0
TMEM218	219854	broad.mit.edu	37	11	124967604	124967604	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:124967604G>A	uc001qbs.2	-	4	898	c.246C>T	c.(244-246)GTC>GTT	p.V82V	TMEM218_uc001qbr.2_Silent_p.V108V|TMEM218_uc010saw.1_Silent_p.V117V|TMEM218_uc010sax.1_Silent_p.V82V|TMEM218_uc001qbt.2_Silent_p.V117V|TMEM218_uc010say.1_RNA	NM_001080546	NP_001074015	A2RU14	TM218_HUMAN	transmembrane protein 218	82	Helical; (Potential).					integral to membrane					0						AAGCCAGCAGGACATAGCGGC	0.448													7	36					0	0	1	0	0
CHEK1	1111	broad.mit.edu	37	11	125513759	125513759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:125513759C>T	uc009zbo.2	+	9	1779	c.887C>T	c.(886-888)TCC>TTC	p.S296F	CHEK1_uc010sbh.1_Missense_Mutation_p.S312F|CHEK1_uc010sbi.1_Missense_Mutation_p.S296F|CHEK1_uc001qcf.3_Missense_Mutation_p.S296F|CHEK1_uc009zbp.2_Missense_Mutation_p.S296F|CHEK1_uc001qcg.3_Missense_Mutation_p.S296F|CHEK1_uc009zbq.2_Missense_Mutation_p.S296F|CHEK1_uc001qci.1_RNA|CHEK1_uc001qcj.2_5'Flank	NM_001114122	NP_001107594	O14757	CHK1_HUMAN	checkpoint kinase 1	296					cellular response to mechanical stimulus|DNA repair|DNA replication|gamete generation|negative regulation of cell proliferation|reciprocal meiotic recombination|regulation of cyclin-dependent protein kinase activity|replicative senescence	condensed nuclear chromosome|microtubule organizing center|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|skin(1)	6	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0748)		CACATTCAATCCAATTTGGAC	0.383								Other_conserved_DNA_damage_response_genes					17	54					0	0	1	0	0
DDX25	29118	broad.mit.edu	37	11	125780323	125780323	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:125780323G>A	uc001qcz.3	+	7	713	c.572G>A	c.(571-573)GGA>GAA	p.G191E	DDX25_uc010sbk.1_Missense_Mutation_p.G191E	NM_013264	NP_037396	Q9UHL0	DDX25_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	191	Helicase ATP-binding.				mRNA export from nucleus|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|nucleus	ATP binding|ATP-dependent RNA helicase activity|RNA binding	p.E191Q(1)		ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0203)|Lung NSC(97;0.0203)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.14e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.046)		GAGCAGATGGGAAAATTCTGT	0.388													11	102					0	0	1	0	0
DDX25	29118	broad.mit.edu	37	11	125787074	125787074	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:125787074G>A	uc001qcz.3	+	9	1107	c.966G>A	c.(964-966)AGG>AGA	p.R322R	DDX25_uc010sbk.1_Silent_p.R322R	NM_013264	NP_037396	Q9UHL0	DDX25_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	322	Helicase C-terminal.				mRNA export from nucleus|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|nucleus	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0203)|Lung NSC(97;0.0203)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.14e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.046)		GTGAGCACAGGAAAGACAAAT	0.468													8	16					0	0	1	0	0
CDON	50937	broad.mit.edu	37	11	125875776	125875776	+	Missense_Mutation	SNP	G	A	A	rs145492265		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:125875776G>A	uc009zbw.2	-	9	1857	c.1729C>T	c.(1729-1731)CCT>TCT	p.P577S	CDON_uc001qdb.3_5'Flank|CDON_uc001qdc.3_Missense_Mutation_p.P577S|CDON_uc001qdd.3_RNA	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	577	Extracellular (Potential).|Fibronectin type-III 1.				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding	p.P577S(1)		ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		GGGGCATCAGGAACAGAGATG	0.562													33	76					0	0	1	0	0
RPUSD4	84881	broad.mit.edu	37	11	126074205	126074205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:126074205C>T	uc001qde.2	-	6	869	c.815G>A	c.(814-816)CGA>CAA	p.R272Q	RPUSD4_uc010sbl.1_Missense_Mutation_p.R79Q|RPUSD4_uc009zbz.2_Missense_Mutation_p.R241Q|RPUSD4_uc009zby.2_RNA	NM_032795	NP_116184	Q96CM3	RUSD4_HUMAN	RNA pseudouridylate synthase domain containing 4	272					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			breast(1)	1	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0761)		CAAGTGAACTCGAAGCTGATG	0.363													15	65					0	0	1	0	0
FOXRED1	55572	broad.mit.edu	37	11	126143269	126143269	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:126143269C>T	uc001qdi.2	+	4	503	c.456C>T	c.(454-456)CTC>CTT	p.L152L	FOXRED1_uc010sbn.1_5'UTR|FOXRED1_uc010sbo.1_RNA|FOXRED1_uc010sbp.1_5'UTR|FOXRED1_uc010sbq.1_Missense_Mutation_p.P21S|FOXRED1_uc001qdj.2_5'UTR|FOXRED1_uc010sbr.1_Silent_p.L138L|FOXRED1_uc001qdk.2_5'UTR	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	152						integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		CCCTGGACCTCCGGTTCAACC	0.557													31	120					0	0	1	0	0
FOXRED1	55572	broad.mit.edu	37	11	126143291	126143291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:126143291C>T	uc001qdi.2	+	4	525	c.478C>T	c.(478-480)CTC>TTC	p.L160F	FOXRED1_uc010sbn.1_5'UTR|FOXRED1_uc010sbo.1_RNA|FOXRED1_uc010sbp.1_5'UTR|FOXRED1_uc010sbq.1_Missense_Mutation_p.P28L|FOXRED1_uc001qdj.2_5'UTR|FOXRED1_uc010sbr.1_Missense_Mutation_p.L146F|FOXRED1_uc001qdk.2_5'UTR	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	160						integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		CTCGGGCTACCTCTTGCTGGC	0.567													8	129					0	0	1	0	0
FLI1	2313	broad.mit.edu	37	11	128642808	128642808	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128642808G>A	uc010sbu.1	+	4	858	c.517G>A	c.(517-519)GAG>AAG	p.E173K	FLI1_uc010sbt.1_Intron|FLI1_uc010sbv.1_Missense_Mutation_p.E140K|FLI1_uc009zci.2_Missense_Mutation_p.E107K	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	173	PNT.				hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		AATGAACAAGGAGGACTTCCT	0.522			T	EWSR1	Ewing sarcoma								47	141					0	0	1	0	0
FLI1	2313	broad.mit.edu	37	11	128651888	128651888	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128651888G>A	uc010sbu.1	+	5	966	c.625G>A	c.(625-627)GAC>AAC	p.D209N	FLI1_uc010sbt.1_Missense_Mutation_p.D16N|FLI1_uc010sbv.1_Missense_Mutation_p.D176N|FLI1_uc009zci.2_Missense_Mutation_p.D143N	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	209					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		CTCCCACACCGACCAATCCTC	0.413			T	EWSR1	Ewing sarcoma								34	89					0	0	1	0	0
FLI1	2313	broad.mit.edu	37	11	128677123	128677123	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128677123G>A	uc010sbu.1	+	7	1111	c.770G>A	c.(769-771)CGG>CAG	p.R257Q	FLI1_uc010sbt.1_Missense_Mutation_p.R64Q|FLI1_uc010sbv.1_Missense_Mutation_p.R224Q|FLI1_uc009zci.2_Missense_Mutation_p.R191Q	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	257					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		ACAGAGCAACGGCCCCAGCCA	0.512			T	EWSR1	Ewing sarcoma								7	19					0	0	1	0	0
FLI1	2313	broad.mit.edu	37	11	128680491	128680491	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128680491G>A	uc010sbu.1	+	9	1308	c.967G>A	c.(967-969)GAG>AAG	p.E323K	FLI1_uc010sbt.1_Missense_Mutation_p.E130K|FLI1_uc010sbv.1_Missense_Mutation_p.E290K|FLI1_uc009zci.2_Missense_Mutation_p.E257K	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	323	ETS.			E -> Q (in Ref. 4; AAB23637 and 5; AAA58479/AAA58480).	hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		GCGCTGGGGCGAGCGGAAAAG	0.552			T	EWSR1	Ewing sarcoma								12	28					0	0	1	0	0
FLI1	2313	broad.mit.edu	37	11	128680643	128680643	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128680643G>A	uc010sbu.1	+	9	1460	c.1119G>A	c.(1117-1119)CCG>CCA	p.P373P	FLI1_uc010sbt.1_Silent_p.P180P|FLI1_uc010sbv.1_Silent_p.P340P|FLI1_uc009zci.2_Silent_p.P307P	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	373					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		AGCCACATCCGACCGAGTCGT	0.478			T	EWSR1	Ewing sarcoma								10	40					0	0	1	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709191	128709191	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128709191C>T	uc001qeo.1	-	2	1056	c.1005G>A	c.(1003-1005)GGG>GGA	p.G335G	KCNJ1_uc001qep.1_Silent_p.G316G|KCNJ1_uc001qeq.1_Silent_p.G316G|KCNJ1_uc001qer.1_Silent_p.G316G|KCNJ1_uc001qes.1_Silent_p.G316G	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	335	Cytoplasmic (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	CTCGGTATTTCCCTTCCTTTG	0.493													26	60					0	0	1	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781494	128781494	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128781494G>A	uc001qet.2	+	2	640	c.326G>A	c.(325-327)TGG>TAG	p.W109*	KCNJ5_uc009zck.2_Nonsense_Mutation_p.W109*|KCNJ5_uc001qew.2_Nonsense_Mutation_p.W109*	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	109	Helical; Name=M1; (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	TTCATTTGGTGGCTCATTGCT	0.527													32	71					0	0	1	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781919	128781919	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128781919C>T	uc001qet.2	+	2	1065	c.751C>T	c.(751-753)CCC>TCC	p.P251S	KCNJ5_uc009zck.2_Missense_Mutation_p.P251S|KCNJ5_uc001qew.2_Missense_Mutation_p.P251S	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	251	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	GGAGTTCATCCCCCTGAACCA	0.592													42	106					0	0	1	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781930	128781930	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128781930G>A	uc001qet.2	+	2	1076	c.762G>A	c.(760-762)CAG>CAA	p.Q254Q	KCNJ5_uc009zck.2_Silent_p.Q254Q|KCNJ5_uc001qew.2_Silent_p.Q254Q	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	254	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	CCCTGAACCAGACAGACATCA	0.592													20	131					0	0	1	0	0
KCNJ5	3762	broad.mit.edu	37	11	128786428	128786428	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128786428C>T	uc001qet.2	+	3	1376	c.1062C>T	c.(1060-1062)ACC>ACT	p.T354T	KCNJ5_uc009zck.2_Silent_p.T354T|KCNJ5_uc001qew.2_Silent_p.T354T	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	354	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	TCCATGATACCTATGAGACCA	0.577													51	131					0	0	1	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128840283	128840283	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128840283G>A	uc009zcp.2	-	22	4783	c.4783C>T	c.(4783-4785)CGC>TGC	p.R1595C	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.R554C|ARHGAP32_uc001qez.2_Missense_Mutation_p.R1246C	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1595	Interaction with GAB2.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						GGAACAGAGCGAATCATGGAA	0.542													20	43					0	0	1	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128840353	128840353	+	Silent	SNP	G	A	A	rs150340160		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128840353G>A	uc009zcp.2	-	22	4713	c.4713C>T	c.(4711-4713)CCC>CCT	p.P1571P	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Silent_p.P530P|ARHGAP32_uc001qez.2_Silent_p.P1222P	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1571	Interaction with GAB2.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						GAATGTCTTCGGGGTAACAGG	0.547													18	45					0	0	1	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128855915	128855915	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128855915G>A	uc009zcp.2	-	14	1467	c.1467C>T	c.(1465-1467)CTC>CTT	p.L489L	ARHGAP32_uc009zcq.1_Silent_p.L449L|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Silent_p.L140L|ARHGAP32_uc001qfb.2_Silent_p.L274L	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	489	Rho-GAP.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						GTGGTGGGGGGAGCTGCTGGA	0.438													8	35					0	0	1	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128856489	128856489	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:128856489G>A	uc009zcp.2	-	13	1331	c.1331C>T	c.(1330-1332)TCC>TTC	p.S444F	ARHGAP32_uc009zcq.1_Missense_Mutation_p.S404F|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.S95F|ARHGAP32_uc001qfb.2_Missense_Mutation_p.S229F	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	444	Rho-GAP.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						CTTACATAGGGAACCCACAGA	0.468													23	87					0	0	1	0	0
BARX2	8538	broad.mit.edu	37	11	129321287	129321287	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:129321287C>T	uc001qfc.3	+	4	880	c.830C>T	c.(829-831)CCA>CTA	p.P277L		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	277											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		GAACCCCCACCATTAAGCTAA	0.542													25	65					0	0	1	0	0
TMEM45B	120224	broad.mit.edu	37	11	129722454	129722454	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:129722454C>T	uc001qfe.1	+	2	138	c.77C>T	c.(76-78)CCG>CTG	p.P26L	TMEM45B_uc001qff.1_Missense_Mutation_p.P26L	NM_138788	NP_620143	Q96B21	TM45B_HUMAN	transmembrane protein 45B	26	Helical; (Potential).					integral to membrane					0	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.012)|Lung(977;0.179)|LUSC - Lung squamous cell carcinoma(976;0.189)		GTGAAGTACCCGCTGAAGTAC	0.493													13	105					0	0	1	0	0
NFRKB	4798	broad.mit.edu	37	11	129744079	129744079	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:129744079G>A	uc001qfi.2	-	21	2409	c.2208C>T	c.(2206-2208)TCC>TCT	p.S736S	NFRKB_uc001qfg.2_Silent_p.S761S|NFRKB_uc001qfh.2_Silent_p.S759S|NFRKB_uc010sbw.1_Silent_p.S746S|NFRKB_uc009zcr.2_Silent_p.S22S	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	736	Pro-rich.|Ser-rich.				DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		CAGGTGGAGGGGAGATGGGAA	0.557													28	83					0	0	1	0	0
NFRKB	4798	broad.mit.edu	37	11	129752087	129752087	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:129752087G>A	uc001qfi.2	-	11	1286	c.1085C>T	c.(1084-1086)CCC>CTC	p.P362L	NFRKB_uc001qfg.2_Missense_Mutation_p.P387L|NFRKB_uc001qfh.2_Missense_Mutation_p.P385L|NFRKB_uc010sbw.1_Missense_Mutation_p.P374L	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	362					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		GTCTTCAAGGGGCCTAATGAG	0.438													12	32					0	0	1	0	0
PRDM10	56980	broad.mit.edu	37	11	129781995	129781995	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:129781995G>A	uc001qfm.2	-	19	3211	c.2979C>T	c.(2977-2979)GCC>GCT	p.A993A	PRDM10_uc001qfj.2_Intron|PRDM10_uc001qfk.2_Intron|PRDM10_uc001qfl.2_Silent_p.A907A|PRDM10_uc010sbx.1_Silent_p.A903A|PRDM10_uc001qfn.2_Silent_p.A989A	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		CGGAGGACGGGGCCGAGGCGG	0.572													37	117					0	0	1	0	0
APLP2	334	broad.mit.edu	37	11	130011906	130011906	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130011906C>T	uc010sby.1	+	17	2284	c.2127C>T	c.(2125-2127)ATC>ATT	p.I709I	APLP2_uc001qfp.2_Silent_p.I697I|APLP2_uc001qfq.2_Silent_p.I641I|APLP2_uc010sbz.1_Silent_p.I497I|APLP2_uc001qfr.2_Silent_p.I463I|APLP2_uc001qfs.2_Silent_p.I468I|APLP2_uc001qfv.2_Silent_p.I600I|APLP2_uc009zcv.2_Silent_p.I57I	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	709	Helical; (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		CCACGGTCATCGTCATCAGCC	0.602													13	23					0	0	1	0	0
ST14	6768	broad.mit.edu	37	11	130059685	130059685	+	Silent	SNP	C	T	T	rs142848651	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130059685C>T	uc001qfw.2	+	5	685	c.492C>T	c.(490-492)CAC>CAT	p.H164H	ST14_uc010sca.1_5'Flank	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	164	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	TCCCGCAGCACCTGGTGGAGG	0.677													50	110					0	0	1	0	0
ST14	6768	broad.mit.edu	37	11	130060506	130060507	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130060506_130060507CC>TT	uc001qfw.2	+	7	985_986	c.792_793CC>TT	c.(790-795)GACCTT>GATTTT	p.L265F	ST14_uc010sca.1_Missense_Mutation_p.L75F	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	265	Extracellular (Potential).|CUB 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	GCAGCTTTGACCTTGCGTCCTG	0.703													9	21					0	0	1	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130275666	130275666	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130275666G>T	uc001qgg.3	-	9	2815	c.2457C>A	c.(2455-2457)AGC>AGA	p.S819R	ADAMTS8_uc001qgf.2_Missense_Mutation_p.S300R	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	819	Spacer.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CTCTCTCTTTGCTGCTCTGCA	0.577													63	191					7.55815e-43	7.6062e-43	1	1	0
ADAMTS8	11095	broad.mit.edu	37	11	130275789	130275789	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130275789G>A	uc001qgg.3	-	9	2692	c.2334C>T	c.(2332-2334)AGC>AGT	p.S778S	ADAMTS8_uc001qgf.2_Silent_p.S259S	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	778	Spacer.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		AGGGCCGGAAGCTCTGCAGGC	0.582													74	123					0	0	1	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130281490	130281490	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130281490C>T	uc001qgg.3	-	6	1930	c.1572G>A	c.(1570-1572)GTG>GTA	p.V524V	ADAMTS8_uc001qgf.2_Silent_p.V5V	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	524	Disintegrin.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CTCCATCTGCCACGGGCTGCA	0.582													16	47					0	0	1	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130286841	130286841	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130286841C>T	uc001qgg.3	-	3	1448	c.1090G>A	c.(1090-1092)GAA>AAA	p.E364K		NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	364	Peptidase M12B.	By similarity.			negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		TTACCTAGTTCATGGGCCAGG	0.572													75	166					0	0	1	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130319437	130319437	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130319437C>T	uc010scd.1	+	1	569	c.569C>T	c.(568-570)CCT>CTT	p.P190L		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	190					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		GCCCTGGACCCTTACAAGCCG	0.726													5	5					0	0	1	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130319507	130319507	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130319507C>T	uc010scd.1	+	1	639	c.639C>T	c.(637-639)TTC>TTT	p.F213F		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	213					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		CCAAGCGTTTCGTGTCTATCC	0.667													7	6					0	0	1	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130341178	130341178	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130341178G>A	uc010scd.1	+	7	1978	c.1978G>A	c.(1978-1980)GAT>AAT	p.D660N		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	660	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		GGCTGGCTGTGATGGGAACCT	0.567													9	54					0	0	1	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130343086	130343086	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:130343086C>T	uc010scd.1	+	8	2223	c.2223C>T	c.(2221-2223)TTC>TTT	p.F741F		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	741	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		ACGGGCATTTCGTGGTGTCGG	0.637													31	56					0	0	1	0	0
NTM	50863	broad.mit.edu	37	11	131781525	131781525	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:131781525G>A	uc001qgp.2	+	1	814	c.150G>A	c.(148-150)GGG>GGA	p.G50G	NTM_uc001qgm.2_Silent_p.G50G|NTM_uc010sch.1_Silent_p.G41G|NTM_uc010sci.1_Silent_p.G50G|NTM_uc010scj.1_Silent_p.G9G|NTM_uc001qgo.2_Silent_p.G50G|NTM_uc001qgq.2_Silent_p.G50G	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	50	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						TCCGGCAGGGGGAGAGCGCCA	0.612											OREG0021537	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	89					0	0	1	0	0
NTM	50863	broad.mit.edu	37	11	132016264	132016264	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:132016264C>T	uc001qgp.2	+	2	920	c.256C>T	c.(256-258)CCT>TCT	p.P86S	NTM_uc001qgm.2_Missense_Mutation_p.P86S|NTM_uc010sch.1_Missense_Mutation_p.P77S|NTM_uc010sci.1_Missense_Mutation_p.P86S|NTM_uc010scj.1_Missense_Mutation_p.P45S|NTM_uc001qgo.2_Missense_Mutation_p.P86S|NTM_uc001qgq.2_Missense_Mutation_p.P86S	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	86	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						GTGCCTGGATCCTCGCGTGGT	0.572													21	57					0	0	1	0	0
NTM	50863	broad.mit.edu	37	11	132177606	132177606	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:132177606G>A	uc001qgp.2	+	4	1214	c.550G>A	c.(550-552)GAA>AAA	p.E184K	NTM_uc001qgm.2_Missense_Mutation_p.E184K|NTM_uc010sch.1_Missense_Mutation_p.E175K|NTM_uc010sci.1_Missense_Mutation_p.E184K|NTM_uc010scj.1_Missense_Mutation_p.E143K|NTM_uc001qgo.2_Missense_Mutation_p.E184K|NTM_uc001qgq.2_Missense_Mutation_p.E184K|NTM_uc001qgr.2_5'UTR	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	184	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						GAGTGAAGACGAATACTTGGA	0.493													23	59					0	0	1	0	0
OPCML	4978	broad.mit.edu	37	11	132307179	132307179	+	Missense_Mutation	SNP	C	T	T	rs148167692		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:132307179C>T	uc001qgs.2	-	4	651	c.601G>A	c.(601-603)GAA>AAA	p.E201K	OPCML_uc001qgu.2_Missense_Mutation_p.E194K|OPCML_uc010sck.1_Missense_Mutation_p.E201K|OPCML_uc001qgt.2_Missense_Mutation_p.E200K|OPCML_uc010scl.1_Missense_Mutation_p.E160K	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	201	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity	p.E201K(1)		ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		GCGCTGCATTCGTACTCCCCG	0.532													11	63					0	0	1	0	0
OPCML	4978	broad.mit.edu	37	11	132399036	132399036	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:132399036C>T	uc001qgs.2	-	3	495	c.445G>A	c.(445-447)GAG>AAG	p.E149K	OPCML_uc001qgu.2_Missense_Mutation_p.E142K|OPCML_uc010sck.1_Missense_Mutation_p.E149K|OPCML_uc001qgt.2_Missense_Mutation_p.E149K|OPCML_uc010scl.1_Missense_Mutation_p.E108K	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	149	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity			ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		CTGCTTCCCTCATTCACAGTG	0.463													23	60					0	0	1	0	0
OPCML	4978	broad.mit.edu	37	11	132527047	132527047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:132527047G>A	uc001qgs.2	-	2	385	c.335C>T	c.(334-336)CCG>CTG	p.P112L	OPCML_uc001qgu.2_Missense_Mutation_p.P105L|OPCML_uc010sck.1_Missense_Mutation_p.P112L|OPCML_uc001qgt.2_Missense_Mutation_p.P112L|OPCML_uc010scl.1_Missense_Mutation_p.P71L	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	112	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity			ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		GCAGGTGTACGGACCTTCGTC	0.502													22	89					0	0	1	0	0
SPATA19	219938	broad.mit.edu	37	11	133712390	133712390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:133712390C>T	uc001qgv.1	-	5	478	c.427G>A	c.(427-429)GTG>ATG	p.V143M		NM_174927	NP_777587	Q7Z5L4	SPT19_HUMAN	spermatogenesis associated 19 precursor	143					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrial outer membrane					0	all_hematologic(175;0.127)	all_cancers(12;5.59e-17)|all_epithelial(12;2.65e-12)|all_lung(97;0.00045)|Lung NSC(97;0.000861)|Breast(109;0.000873)|Medulloblastoma(222;0.0425)|Esophageal squamous(93;0.0844)|all_neural(223;0.117)		Epithelial(10;4.36e-10)|all cancers(11;7.1e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00286)|Lung(977;0.207)		CTTCGTCTCACCTGCTCTATT	0.532													40	93					0	0	1	0	0
SPATA19	219938	broad.mit.edu	37	11	133714141	133714141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:133714141C>T	uc001qgv.1	-	4	410	c.359G>A	c.(358-360)AGC>AAC	p.S120N		NM_174927	NP_777587	Q7Z5L4	SPT19_HUMAN	spermatogenesis associated 19 precursor	120					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrial outer membrane					0	all_hematologic(175;0.127)	all_cancers(12;5.59e-17)|all_epithelial(12;2.65e-12)|all_lung(97;0.00045)|Lung NSC(97;0.000861)|Breast(109;0.000873)|Medulloblastoma(222;0.0425)|Esophageal squamous(93;0.0844)|all_neural(223;0.117)		Epithelial(10;4.36e-10)|all cancers(11;7.1e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00286)|Lung(977;0.207)		GACACCTTACCTCCATCTTAT	0.527													29	87					0	0	1	0	0
SPATA19	219938	broad.mit.edu	37	11	133714162	133714162	+	Missense_Mutation	SNP	C	T	T	rs138223153		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:133714162C>T	uc001qgv.1	-	4	389	c.338G>A	c.(337-339)CGA>CAA	p.R113Q		NM_174927	NP_777587	Q7Z5L4	SPT19_HUMAN	spermatogenesis associated 19 precursor	113					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrial outer membrane					0	all_hematologic(175;0.127)	all_cancers(12;5.59e-17)|all_epithelial(12;2.65e-12)|all_lung(97;0.00045)|Lung NSC(97;0.000861)|Breast(109;0.000873)|Medulloblastoma(222;0.0425)|Esophageal squamous(93;0.0844)|all_neural(223;0.117)		Epithelial(10;4.36e-10)|all cancers(11;7.1e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00286)|Lung(977;0.207)		GAACTGGATTCGTGTTCTCTC	0.537													30	95					0	0	1	0	0
GLB1L3	112937	broad.mit.edu	37	11	134158754	134158754	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:134158754G>A	uc009zdf.2	+	7	1059	c.699G>A	c.(697-699)AAG>AAA	p.K233K	GLB1L3_uc010scs.1_Silent_p.K233K|GLB1L3_uc010sct.1_Silent_p.K85K	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	233					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		CATTCAATAAGGATAAAACAT	0.498													3	24					0	0	1	0	0
GLB1L3	112937	broad.mit.edu	37	11	134163082	134163082	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:134163082C>T	uc009zdf.2	+	9	1215	c.855C>T	c.(853-855)TTC>TTT	p.F285F	GLB1L3_uc010scs.1_Silent_p.F285F|GLB1L3_uc010sct.1_Silent_p.F137F|GLB1L3_uc010scu.1_5'UTR	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	285					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		AGGATACTTTCAATCAGCTTC	0.478													12	30					0	0	1	0	0
GLB1L3	112937	broad.mit.edu	37	11	134179608	134179608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:134179608G>A	uc009zdf.2	+	11	1410	c.1050G>A	c.(1048-1050)ATG>ATA	p.M350I	GLB1L3_uc010scu.1_Missense_Mutation_p.M51I|GLB1L3_uc001qho.3_RNA	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	350					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		TTGGTTTCATGAACGGGGCCA	0.493													4	20					0	0	1	0	0
GLB1L3	112937	broad.mit.edu	37	11	134179613	134179613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:134179613G>A	uc009zdf.2	+	11	1415	c.1055G>A	c.(1054-1056)GGG>GAG	p.G352E	GLB1L3_uc010scu.1_Missense_Mutation_p.G53E|GLB1L3_uc001qho.3_RNA	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	352					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		TTCATGAACGGGGCCACATAT	0.483													6	18					0	0	1	0	0
GLB1L3	112937	broad.mit.edu	37	11	134183896	134183896	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr11:134183896G>A	uc009zdf.2	+	17	2001	c.1641G>A	c.(1639-1641)CTG>CTA	p.L547L	GLB1L3_uc001qho.3_RNA	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	547					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		TCTATTCCCTGGAGATGAAAA	0.483													4	20					0	0	1	0	0
LOC100288778	100288778	broad.mit.edu	37	12	90925	90925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:90925C>T	uc010scy.1	+	10	1346	c.791C>T	c.(790-792)TCC>TTC	p.S264F	LOC100288778_uc010scz.1_RNA|LOC100288778_uc010sdd.1_3'UTR|LOC100288778_uc010sde.1_Missense_Mutation_p.S264F|LOC100288778_uc010sdf.1_Missense_Mutation_p.S264F|LOC100288778_uc010sdg.1_Missense_Mutation_p.S264F|LOC100288778_uc010sdh.1_RNA					SubName: Full=Actin nucleation promoting factor; Flags: Fragment;												0						GACTGGGAATCCTAGGGGGCT	0.647													9	31					0	0	1	0	0
IQSEC3	440073	broad.mit.edu	37	12	271138	271138	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:271138C>T	uc001qhw.1	+	5	1587	c.1581C>T	c.(1579-1581)ATC>ATT	p.I527I	IQSEC3_uc001qhu.1_Silent_p.I527I	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	830	SEC7.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		TGGTAGGCATCTATGAGAGGA	0.577													5	18					0	0	1	0	0
IQSEC3	440073	broad.mit.edu	37	12	280286	280286	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:280286G>A	uc001qhw.1	+	10	2170	c.2164G>A	c.(2164-2166)GAA>AAA	p.E722K	IQSEC3_uc001qhu.1_Missense_Mutation_p.E722K	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	1025					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		AGCCAAAAGGGAAGCCGCGCT	0.617													16	59					0	0	1	0	0
SLC6A12	6539	broad.mit.edu	37	12	313789	313789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:313789C>T	uc001qhz.2	-	5	833	c.290G>A	c.(289-291)GGC>GAC	p.G97D	SLC6A12_uc001qia.2_Missense_Mutation_p.G97D|SLC6A12_uc001qib.2_Missense_Mutation_p.G97D|SLC6A12_uc009zdh.1_Missense_Mutation_p.G97D|SLC6A12_uc009zdi.1_RNA	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	97					cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			GGTGTATTGGCCCAACGCCAC	0.582													17	48					0	0	1	0	0
SLC6A12	6539	broad.mit.edu	37	12	318966	318966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:318966G>A	uc001qhz.2	-	4	730	c.187C>T	c.(187-189)CCC>TCC	p.P63S	SLC6A12_uc001qia.2_Missense_Mutation_p.P63S|SLC6A12_uc001qib.2_Missense_Mutation_p.P63S|SLC6A12_uc009zdh.1_Missense_Mutation_p.P63S|SLC6A12_uc009zdi.1_Intron	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	63	Helical; Name=1; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			CAGAGATAGGGAAACCTCCAG	0.577													33	138					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	333251	333251	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:333251G>A	uc001qic.1	-	11	1271	c.1218C>T	c.(1216-1218)TAC>TAT	p.Y406Y	SLC6A13_uc009zdj.1_Silent_p.Y396Y|SLC6A13_uc010sdl.1_Silent_p.Y314Y	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	406					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			ACACGTGAGGGTACATGTCCA	0.562													14	42					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	333603	333603	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:333603G>A	uc001qic.1	-	10	1190	c.1137C>T	c.(1135-1137)TTC>TTT	p.F379F	SLC6A13_uc009zdj.1_Silent_p.F369F|SLC6A13_uc010sdl.1_Silent_p.F287F	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	379	Helical; Name=8; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CCATGAAGAAGAAACAGCAGG	0.597													15	98					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	336757	336757	+	Nonsense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:336757G>C	uc001qic.1	-	8	962	c.909C>G	c.(907-909)TAC>TAG	p.Y303*	SLC6A13_uc009zdj.1_Nonsense_Mutation_p.Y303*|SLC6A13_uc010sdl.1_Nonsense_Mutation_p.Y211*|SLC6A13_uc010sdm.1_Nonsense_Mutation_p.Y184*	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	303					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			GGTACTTGTTGTAGCTGCCCA	0.562													17	39					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	336800	336800	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:336800G>A	uc001qic.1	-	8	919	c.866C>T	c.(865-867)TCC>TTC	p.S289F	SLC6A13_uc009zdj.1_Missense_Mutation_p.S289F|SLC6A13_uc010sdl.1_Missense_Mutation_p.S197F|SLC6A13_uc010sdm.1_Missense_Mutation_p.S170F	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	289	Helical; Name=6; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			GATGGCGAAGGAGAAGAATAT	0.567													17	36					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	344285	344285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:344285G>A	uc001qic.1	-	7	855	c.802C>T	c.(802-804)CCA>TCA	p.P268S	SLC6A13_uc009zdj.1_Missense_Mutation_p.P268S|SLC6A13_uc010sdl.1_Missense_Mutation_p.P176S|SLC6A13_uc010sdm.1_Missense_Mutation_p.P149S	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	268					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			GTGAGGTTTGGGTACAGGTAA	0.557													15	67					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	344305	344305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:344305C>T	uc001qic.1	-	7	835	c.782G>A	c.(781-783)GGA>GAA	p.G261E	SLC6A13_uc009zdj.1_Missense_Mutation_p.G261E|SLC6A13_uc010sdl.1_Missense_Mutation_p.G169E|SLC6A13_uc010sdm.1_Missense_Mutation_p.G142E	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	261					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			AAACTGAATTCCTTGGGCTGC	0.557													12	69					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	352969	352969	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:352969G>A	uc001qic.1	-	3	266	c.213C>T	c.(211-213)TTC>TTT	p.F71F	SLC6A13_uc009zdj.1_Silent_p.F71F|SLC6A13_uc010sdl.1_Intron|SLC6A13_uc010sdm.1_5'Flank	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	71	Helical; Name=2; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			GGTAGGGGATGAAGAAGGCAC	0.527													23	45					0	0	1	0	0
KDM5A	5927	broad.mit.edu	37	12	404911	404911	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:404911C>T	uc001qif.1	-	26	4646	c.4283G>A	c.(4282-4284)CGA>CAA	p.R1428Q	KDM5A_uc001qie.1_Missense_Mutation_p.R1433Q	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	1428					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						TTCCAAACTTCGGGGCACCAA	0.448			T 	NUP98	AML								58	119					0	0	1	0	0
CCDC77	84318	broad.mit.edu	37	12	549866	549866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:549866C>T	uc001qig.2	+	11	1305	c.1125C>T	c.(1123-1125)GCC>GCT	p.A375A	CCDC77_uc009zdk.2_Silent_p.A343A|CCDC77_uc010sdp.1_Silent_p.A343A|CCDC77_uc010sdq.1_Silent_p.A343A	NM_032358	NP_115734	Q9BR77	CCD77_HUMAN	coiled-coil domain containing 77 isoform a	375	Potential.					centrosome				ovary(1)	1	all_cancers(10;0.0149)|all_epithelial(11;0.035)|all_lung(10;0.111)|Ovarian(42;0.142)|Lung NSC(10;0.156)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.033)			AAGAACTTGCCCGAATTCGTG	0.433													20	67					0	0	1	0	0
CCDC77	84318	broad.mit.edu	37	12	550076	550076	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:550076C>T	uc001qig.2	+	12	1414	c.1234C>T	c.(1234-1236)CGA>TGA	p.R412*	CCDC77_uc009zdk.2_Nonsense_Mutation_p.R380*|CCDC77_uc010sdp.1_Nonsense_Mutation_p.R380*|CCDC77_uc010sdq.1_Nonsense_Mutation_p.R380*	NM_032358	NP_115734	Q9BR77	CCD77_HUMAN	coiled-coil domain containing 77 isoform a	412	Potential.					centrosome				ovary(1)	1	all_cancers(10;0.0149)|all_epithelial(11;0.035)|all_lung(10;0.111)|Ovarian(42;0.142)|Lung NSC(10;0.156)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.033)			ATTGGAGCGTCGACGTATCCT	0.428													15	57					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	657217	657217	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:657217C>T	uc001qii.1	+	8	735	c.735C>T	c.(733-735)TTC>TTT	p.F245F	B4GALNT3_uc001qij.1_Silent_p.F147F	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	245	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			GGTACTACTTCGAGGTGCTGC	0.642													20	36					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	662562	662562	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:662562C>T	uc001qii.1	+	14	1473	c.1473C>T	c.(1471-1473)TCC>TCT	p.S491S	B4GALNT3_uc001qij.1_Silent_p.S394S|B4GALNT3_uc001qik.1_Silent_p.S40S	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	491	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CCCCCTTCTCCAAGCGGAACT	0.642													9	91					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	666022	666022	+	Silent	SNP	C	T	T	rs150365241		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:666022C>T	uc001qii.1	+	15	2370	c.2370C>T	c.(2368-2370)TTC>TTT	p.F790F	B4GALNT3_uc001qik.1_Silent_p.F339F	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	790	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity	p.F790F(1)		ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			TGGTCCACTTCGTCGTGCCTG	0.607													7	33					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	670560	670560	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:670560C>T	uc001qii.1	+	20	2940	c.2940C>T	c.(2938-2940)TTC>TTT	p.F980F	B4GALNT3_uc001qik.1_Silent_p.F529F	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	980	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			GGAATTTCTTCCATCATTTCC	0.592													7	31					0	0	1	0	0
WNK1	65125	broad.mit.edu	37	12	993927	993927	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:993927C>T	uc001qio.3	+	19	4464	c.3957C>T	c.(3955-3957)CCC>CCT	p.P1319P	WNK1_uc001qip.3_Silent_p.P1072P|WNK1_uc001qir.3_Silent_p.P492P	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1319					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CAGAAGGACCCAACACAGCAC	0.483													43	99					0	0	1	0	0
WNK1	65125	broad.mit.edu	37	12	994600	994600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:994600C>T	uc001qio.3	+	19	5137	c.4630C>T	c.(4630-4632)CTC>TTC	p.L1544F	WNK1_uc001qip.3_Missense_Mutation_p.L1297F|WNK1_uc001qir.3_Missense_Mutation_p.L717F	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1544					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GGCTTTCTCCCTCTCTGCACC	0.478													101	395					0	0	1	0	0
WNK1	65125	broad.mit.edu	37	12	994959	994959	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:994959C>T	uc001qio.3	+	19	5496	c.4989C>T	c.(4987-4989)TTC>TTT	p.F1663F	WNK1_uc001qip.3_Silent_p.F1416F|WNK1_uc001qir.3_Silent_p.F836F	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1663					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GGTCTCTGTTCAGTGAACACA	0.483													21	60					0	0	1	0	0
WNT5B	81029	broad.mit.edu	37	12	1755004	1755004	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1755004C>T	uc009zdq.2	+	5	908	c.666C>T	c.(664-666)GTC>GTT	p.V222V	WNT5B_uc001qjj.2_Silent_p.V222V|WNT5B_uc001qjk.2_Silent_p.V222V|WNT5B_uc001qjl.2_Silent_p.V222V	NM_032642	NP_116031	Q9H1J7	WNT5B_HUMAN	wingless-type MMTV integration site family,	222					angiogenesis|anterior/posterior pattern formation|cell migration involved in gastrulation|cellular response to retinoic acid|chondrocyte differentiation|convergent extension involved in axis elongation|convergent extension involved in gastrulation|dorsal/ventral axis specification|endocrine pancreas development|fat cell differentiation|lens fiber cell development|negative regulation of canonical Wnt receptor signaling pathway|neuron differentiation|positive regulation of cell migration|positive regulation of fat cell differentiation|respiratory system development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding			skin(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00109)			GCCACGGCGTCTCGGGGTCCT	0.617													18	78					0	0	1	0	0
WNT5B	81029	broad.mit.edu	37	12	1755118	1755118	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1755118G>A	uc009zdq.2	+	5	1022	c.780G>A	c.(778-780)AAG>AAA	p.K260K	WNT5B_uc001qjj.2_Silent_p.K260K|WNT5B_uc001qjk.2_Silent_p.K260K|WNT5B_uc001qjl.2_Silent_p.K260K	NM_032642	NP_116031	Q9H1J7	WNT5B_HUMAN	wingless-type MMTV integration site family,	260					angiogenesis|anterior/posterior pattern formation|cell migration involved in gastrulation|cellular response to retinoic acid|chondrocyte differentiation|convergent extension involved in axis elongation|convergent extension involved in gastrulation|dorsal/ventral axis specification|endocrine pancreas development|fat cell differentiation|lens fiber cell development|negative regulation of canonical Wnt receptor signaling pathway|neuron differentiation|positive regulation of cell migration|positive regulation of fat cell differentiation|respiratory system development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding			skin(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00109)			TCACCCGCAAGGGCCGGCTGG	0.682													17	32					0	0	1	0	0
LRTM2	654429	broad.mit.edu	37	12	1940297	1940297	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1940297C>T	uc001qjt.2	+	4	1070	c.264C>T	c.(262-264)TTC>TTT	p.F88F	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Silent_p.F88F|LRTM2_uc010sdx.1_Silent_p.F88F|LRTM2_uc001qjv.2_Intron	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	88	LRR 1.|Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			GCTGGGCTTTCGCCAACCTCT	0.622													7	125					0	0	1	0	0
LRTM2	654429	broad.mit.edu	37	12	1943501	1943501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1943501C>T	uc001qjt.2	+	5	1533	c.727C>T	c.(727-729)CCC>TCC	p.P243S	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.P243S|LRTM2_uc010sdx.1_Missense_Mutation_p.P243S|LRTM2_uc001qjv.2_Missense_Mutation_p.P5S	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	243	LRRCT.|Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			GCGGATGGTCCCCATGGAGAT	0.602													13	44					0	0	1	0	0
LRTM2	654429	broad.mit.edu	37	12	1943503	1943503	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1943503C>T	uc001qjt.2	+	5	1535	c.729C>T	c.(727-729)CCC>CCT	p.P243P	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Silent_p.P243P|LRTM2_uc010sdx.1_Silent_p.P243P|LRTM2_uc001qjv.2_Silent_p.P5P	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	243	LRRCT.|Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			GGATGGTCCCCATGGAGATGT	0.597													13	43					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1953644	1953644	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1953644G>A	uc001qjp.2	-	25	2625	c.2394C>T	c.(2392-2394)TTC>TTT	p.F798F	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.F662F|CACNA2D4_uc009zdr.1_RNA	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	798	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		ACCACAGCGGGAAGCGGTCCA	0.612													13	24					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1953695	1953695	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1953695C>T	uc001qjp.2	-	25	2574	c.2343G>A	c.(2341-2343)AGG>AGA	p.R781R	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.R645R|CACNA2D4_uc009zdr.1_RNA	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	781	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TCAGGAACTTCCTGCAAGGAG	0.562													8	38					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1993972	1993972	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1993972C>T	uc001qjp.2	-	11	1465	c.1234G>A	c.(1234-1236)GAG>AAG	p.E412K	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Missense_Mutation_p.E331K	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	412	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		AACACCGGCTCGTAGTCCTCC	0.567													8	21					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1994036	1994036	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1994036G>A	uc001qjp.2	-	11	1401	c.1170C>T	c.(1168-1170)GCC>GCT	p.A390A	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.A309A	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	390	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TTCCTTGCTTGGCCTCTTGGA	0.617													10	29					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1996215	1996215	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1996215C>T	uc001qjp.2	-	7	1033	c.802G>A	c.(802-804)GAG>AAG	p.E268K	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	268	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		ACTCCATTCTCATCAGGTGTC	0.502													4	12					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1996226	1996226	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:1996226C>T	uc001qjp.2	-	7	1022	c.791G>A	c.(790-792)TGG>TAG	p.W264*	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	264	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		ATCAGGTGTCCATTTTATACC	0.517													3	11					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	2017126	2017126	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2017126G>A	uc001qjp.2	-	5	795	c.564C>T	c.(562-564)CTC>CTT	p.L188L	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.L188L	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	188	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TGGACTCCAGGAGGAACTCGG	0.597													8	36					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	2022194	2022195	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2022194_2022195CC>TT	uc001qjp.2	-	3	651_652	c.420_421GG>AA	c.(418-423)GCGGTC>GCAATC	p.V141I	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Missense_Mutation_p.V141I	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	141	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		AGTACCTGGACCGCCTCGACTT	0.599													4	19					0	0	1	0	0
DCP1B	196513	broad.mit.edu	37	12	2062038	2062038	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2062038G>A	uc001qjx.1	-	7	1148	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	DCP1B_uc010sdy.1_Silent_p.F254F	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	356					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			GAAGTTTCTCGAACAGGTTCT	0.532													20	77					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2229538	2229538	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2229538C>T	uc009zdu.1	+	3	732	c.419C>T	c.(418-420)GCC>GTC	p.A140V	CACNA1C_uc009zdv.1_Missense_Mutation_p.A140V|CACNA1C_uc001qkb.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkc.2_Missense_Mutation_p.A140V|CACNA1C_uc001qke.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkf.2_Missense_Mutation_p.A140V|CACNA1C_uc001qjz.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkd.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkg.2_Missense_Mutation_p.A140V|CACNA1C_uc009zdw.1_Missense_Mutation_p.A140V|CACNA1C_uc001qkh.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkl.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkn.2_Missense_Mutation_p.A140V|CACNA1C_uc001qko.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkp.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkr.2_Missense_Mutation_p.A140V|CACNA1C_uc001qku.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkq.2_Missense_Mutation_p.A140V|CACNA1C_uc001qks.2_Missense_Mutation_p.A140V|CACNA1C_uc001qkt.2_Missense_Mutation_p.A140V|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_5'UTR|CACNA1C_uc001qkj.1_5'UTR|CACNA1C_uc001qkk.1_5'UTR|CACNA1C_uc001qkm.1_5'UTR|CACNA1C_uc009zdx.1_RNA	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	140	Helical; Name=S1 of repeat I; (Potential).|I.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AATTGTGTGGCCTTAGCGATC	0.403													29	115					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2595295	2595295	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2595295C>T	uc009zdu.1	+	6	1096	c.783C>T	c.(781-783)ATC>ATT	p.I261I	CACNA1C_uc009zdv.1_Silent_p.I261I|CACNA1C_uc001qkb.2_Silent_p.I261I|CACNA1C_uc001qkc.2_Silent_p.I261I|CACNA1C_uc001qke.2_Silent_p.I261I|CACNA1C_uc001qkf.2_Silent_p.I261I|CACNA1C_uc001qjz.2_Silent_p.I261I|CACNA1C_uc001qkd.2_Silent_p.I261I|CACNA1C_uc001qkg.2_Silent_p.I261I|CACNA1C_uc009zdw.1_Silent_p.I261I|CACNA1C_uc001qkh.2_Silent_p.I261I|CACNA1C_uc001qkl.2_Silent_p.I261I|CACNA1C_uc001qkn.2_Silent_p.I261I|CACNA1C_uc001qko.2_Silent_p.I261I|CACNA1C_uc001qkp.2_Silent_p.I261I|CACNA1C_uc001qkr.2_Silent_p.I261I|CACNA1C_uc001qku.2_Silent_p.I261I|CACNA1C_uc001qkq.2_Silent_p.I261I|CACNA1C_uc001qks.2_Silent_p.I261I|CACNA1C_uc001qkt.2_Silent_p.I261I|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_5'UTR|CACNA1C_uc001qkj.1_5'UTR|CACNA1C_uc001qkk.1_5'UTR|CACNA1C_uc001qkm.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	261	I.|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TGAATTCCATCATCAAGGCCA	0.527													4	24					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2595311	2595311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2595311C>T	uc009zdu.1	+	6	1112	c.799C>T	c.(799-801)CCC>TCC	p.P267S	CACNA1C_uc009zdv.1_Missense_Mutation_p.P267S|CACNA1C_uc001qkb.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkc.2_Missense_Mutation_p.P267S|CACNA1C_uc001qke.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkf.2_Missense_Mutation_p.P267S|CACNA1C_uc001qjz.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkd.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkg.2_Missense_Mutation_p.P267S|CACNA1C_uc009zdw.1_Missense_Mutation_p.P267S|CACNA1C_uc001qkh.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkl.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkn.2_Missense_Mutation_p.P267S|CACNA1C_uc001qko.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkp.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkr.2_Missense_Mutation_p.P267S|CACNA1C_uc001qku.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkq.2_Missense_Mutation_p.P267S|CACNA1C_uc001qks.2_Missense_Mutation_p.P267S|CACNA1C_uc001qkt.2_Missense_Mutation_p.P267S|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_Missense_Mutation_p.P3S|CACNA1C_uc001qkj.1_Missense_Mutation_p.P3S|CACNA1C_uc001qkk.1_Missense_Mutation_p.P3S|CACNA1C_uc001qkm.1_Missense_Mutation_p.P3S	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	267	I.|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGCCATGGTCCCCCTGCTGCA	0.562													5	21					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2614040	2614040	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2614040G>A	uc009zdu.1	+	8	1459	c.1146G>A	c.(1144-1146)TGG>TGA	p.W382*	CACNA1C_uc009zdv.1_Nonsense_Mutation_p.W379*|CACNA1C_uc001qkb.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkc.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qke.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkf.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qjz.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkd.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkg.2_Nonsense_Mutation_p.W382*|CACNA1C_uc009zdw.1_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkh.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkl.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkp.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkr.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qku.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkq.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qks.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qkt.2_Nonsense_Mutation_p.W382*|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Intron|CACNA1C_uc001qkj.1_Intron|CACNA1C_uc001qkk.1_Intron|CACNA1C_uc001qkm.1_Intron|CACNA1C_uc009zdy.1_Intron|CACNA1C_uc001qkv.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	382	I.|Helical; Name=S6 of repeat I; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ACTGGCCCTGGATCTATTTTG	0.498													8	29					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2622075	2622075	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2622075G>T	uc009zdu.1	+	9	1628	c.1315G>T	c.(1315-1317)GAT>TAT	p.D439Y	CACNA1C_uc009zdv.1_Missense_Mutation_p.D436Y|CACNA1C_uc001qkb.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkc.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qke.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkf.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qjz.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkd.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkg.2_Missense_Mutation_p.D439Y|CACNA1C_uc009zdw.1_Missense_Mutation_p.D439Y|CACNA1C_uc001qkh.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkl.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkn.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qko.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkp.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkr.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qku.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkq.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qks.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qkt.2_Missense_Mutation_p.D439Y|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Missense_Mutation_p.D175Y|CACNA1C_uc001qkj.1_Missense_Mutation_p.D175Y|CACNA1C_uc001qkk.1_Missense_Mutation_p.D175Y|CACNA1C_uc001qkm.1_Missense_Mutation_p.D175Y|CACNA1C_uc009zdy.1_Missense_Mutation_p.D64Y|CACNA1C_uc001qkv.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	439	Binding to the beta subunit (By similarity).|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGGCTACCTGGATTGGATCAC	0.537													6	14					0.00116845	0.00116951	1	1	0
CACNA1C	775	broad.mit.edu	37	12	2622120	2622120	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2622120G>A	uc009zdu.1	+	9	1673	c.1360G>A	c.(1360-1362)GAA>AAA	p.E454K	CACNA1C_uc009zdv.1_Missense_Mutation_p.E451K|CACNA1C_uc001qkb.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkc.2_Missense_Mutation_p.E454K|CACNA1C_uc001qke.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkf.2_Missense_Mutation_p.E454K|CACNA1C_uc001qjz.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkd.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkg.2_Missense_Mutation_p.E454K|CACNA1C_uc009zdw.1_Missense_Mutation_p.E454K|CACNA1C_uc001qkh.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkl.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkn.2_Missense_Mutation_p.E454K|CACNA1C_uc001qko.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkp.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkr.2_Missense_Mutation_p.E454K|CACNA1C_uc001qku.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkq.2_Missense_Mutation_p.E454K|CACNA1C_uc001qks.2_Missense_Mutation_p.E454K|CACNA1C_uc001qkt.2_Missense_Mutation_p.E454K|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Missense_Mutation_p.E190K|CACNA1C_uc001qkj.1_Missense_Mutation_p.E190K|CACNA1C_uc001qkk.1_Missense_Mutation_p.E190K|CACNA1C_uc001qkm.1_Missense_Mutation_p.E190K|CACNA1C_uc009zdy.1_Missense_Mutation_p.E79K|CACNA1C_uc001qkv.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	454	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GAATGAGGACGAAGGCATGGA	0.552													5	7					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2690852	2690852	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2690852C>T	uc009zdu.1	+	14	2305	c.1992C>T	c.(1990-1992)ATC>ATT	p.I664I	CACNA1C_uc009zdv.1_Silent_p.I661I|CACNA1C_uc001qkb.2_Silent_p.I664I|CACNA1C_uc001qkc.2_Silent_p.I664I|CACNA1C_uc001qke.2_Silent_p.I664I|CACNA1C_uc001qkf.2_Silent_p.I664I|CACNA1C_uc001qjz.2_Silent_p.I664I|CACNA1C_uc001qkd.2_Silent_p.I664I|CACNA1C_uc001qkg.2_Silent_p.I664I|CACNA1C_uc009zdw.1_Silent_p.I664I|CACNA1C_uc001qkh.2_Silent_p.I664I|CACNA1C_uc001qkl.2_Silent_p.I664I|CACNA1C_uc001qkn.2_Silent_p.I664I|CACNA1C_uc001qko.2_Silent_p.I664I|CACNA1C_uc001qkp.2_Silent_p.I664I|CACNA1C_uc001qkr.2_Silent_p.I664I|CACNA1C_uc001qku.2_Silent_p.I664I|CACNA1C_uc001qkq.2_Silent_p.I664I|CACNA1C_uc001qks.2_Silent_p.I664I|CACNA1C_uc001qkt.2_Silent_p.I664I|CACNA1C_uc001qka.1_Silent_p.I199I|CACNA1C_uc001qki.1_Silent_p.I400I|CACNA1C_uc001qkj.1_Silent_p.I400I|CACNA1C_uc001qkk.1_Silent_p.I400I|CACNA1C_uc001qkm.1_Silent_p.I400I|CACNA1C_uc001qkw.2_5'Flank	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	664	II.|Helical; Name=S5 of repeat II; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	tcatcatcatcttctccctcc	0.423													10	24					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2705044	2705044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2705044C>T	uc009zdu.1	+	20	2981	c.2668C>T	c.(2668-2670)CGC>TGC	p.R890C	CACNA1C_uc009zdv.1_Missense_Mutation_p.R887C|CACNA1C_uc001qkb.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkc.2_Missense_Mutation_p.R890C|CACNA1C_uc001qke.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkf.2_Missense_Mutation_p.R890C|CACNA1C_uc001qjz.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkd.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkg.2_Missense_Mutation_p.R890C|CACNA1C_uc009zdw.1_Missense_Mutation_p.R890C|CACNA1C_uc001qkh.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkl.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkn.2_Missense_Mutation_p.R890C|CACNA1C_uc001qko.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkp.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkr.2_Missense_Mutation_p.R890C|CACNA1C_uc001qku.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkq.2_Missense_Mutation_p.R890C|CACNA1C_uc001qks.2_Missense_Mutation_p.R890C|CACNA1C_uc001qkt.2_Missense_Mutation_p.R890C|CACNA1C_uc001qka.1_Missense_Mutation_p.R425C|CACNA1C_uc001qki.1_Missense_Mutation_p.R626C|CACNA1C_uc001qkj.1_Missense_Mutation_p.R626C|CACNA1C_uc001qkk.1_Missense_Mutation_p.R626C|CACNA1C_uc001qkm.1_Missense_Mutation_p.R626C|CACNA1C_uc001qkw.2_Missense_Mutation_p.R179C	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	890	III.|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GTACAGGTTTCGCCTCCAGTG	0.582													34	80					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2705137	2705137	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2705137G>A	uc009zdu.1	+	20	3074	c.2761G>A	c.(2761-2763)GAC>AAC	p.D921N	CACNA1C_uc009zdv.1_Missense_Mutation_p.D918N|CACNA1C_uc001qkb.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkc.2_Missense_Mutation_p.D921N|CACNA1C_uc001qke.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkf.2_Missense_Mutation_p.D921N|CACNA1C_uc001qjz.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkd.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkg.2_Missense_Mutation_p.D921N|CACNA1C_uc009zdw.1_Missense_Mutation_p.D921N|CACNA1C_uc001qkh.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkl.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkn.2_Missense_Mutation_p.D921N|CACNA1C_uc001qko.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkp.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkr.2_Missense_Mutation_p.D921N|CACNA1C_uc001qku.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkq.2_Missense_Mutation_p.D921N|CACNA1C_uc001qks.2_Missense_Mutation_p.D921N|CACNA1C_uc001qkt.2_Missense_Mutation_p.D921N|CACNA1C_uc001qka.1_Missense_Mutation_p.D456N|CACNA1C_uc001qki.1_Missense_Mutation_p.D657N|CACNA1C_uc001qkj.1_Missense_Mutation_p.D657N|CACNA1C_uc001qkk.1_Missense_Mutation_p.D657N|CACNA1C_uc001qkm.1_Missense_Mutation_p.D657N|CACNA1C_uc001qkw.2_Missense_Mutation_p.D210N	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	921	III.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGCTGCTGAGGACCCGGTCCA	0.572													21	70					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2711054	2711054	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2711054C>T	uc009zdu.1	+	23	3261	c.2948C>T	c.(2947-2949)TCT>TTT	p.S983F	CACNA1C_uc009zdv.1_Missense_Mutation_p.S960F|CACNA1C_uc001qkb.2_Missense_Mutation_p.S963F|CACNA1C_uc001qkc.2_Missense_Mutation_p.S963F|CACNA1C_uc001qke.2_Missense_Mutation_p.S963F|CACNA1C_uc001qkf.2_Missense_Mutation_p.S963F|CACNA1C_uc001qjz.2_Missense_Mutation_p.S963F|CACNA1C_uc001qkd.2_Missense_Mutation_p.S963F|CACNA1C_uc001qkg.2_Missense_Mutation_p.S963F|CACNA1C_uc009zdw.1_Missense_Mutation_p.S963F|CACNA1C_uc001qkh.2_Missense_Mutation_p.S963F|CACNA1C_uc001qkl.2_Missense_Mutation_p.S983F|CACNA1C_uc001qkn.2_Missense_Mutation_p.S963F|CACNA1C_uc001qko.2_Missense_Mutation_p.S983F|CACNA1C_uc001qkp.2_Missense_Mutation_p.S963F|CACNA1C_uc001qkr.2_Missense_Mutation_p.S963F|CACNA1C_uc001qku.2_Missense_Mutation_p.S963F|CACNA1C_uc001qkq.2_Missense_Mutation_p.S963F|CACNA1C_uc001qks.2_Missense_Mutation_p.S963F|CACNA1C_uc001qkt.2_Missense_Mutation_p.S963F|CACNA1C_uc001qka.1_Missense_Mutation_p.S498F|CACNA1C_uc001qki.1_Missense_Mutation_p.S699F|CACNA1C_uc001qkj.1_Missense_Mutation_p.S699F|CACNA1C_uc001qkk.1_Missense_Mutation_p.S699F|CACNA1C_uc001qkm.1_Missense_Mutation_p.S699F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	983	III.|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CACAAGGGTTCTTTCTGCCGG	0.577													17	42					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2714298	2714298	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2714298G>A	uc009zdu.1	+	24	3385	c.3072G>A	c.(3070-3072)AGG>AGA	p.R1024R	CACNA1C_uc009zdv.1_Silent_p.R1001R|CACNA1C_uc001qkb.2_Silent_p.R1004R|CACNA1C_uc001qkc.2_Silent_p.R1004R|CACNA1C_uc001qke.2_Silent_p.R1004R|CACNA1C_uc001qkf.2_Silent_p.R1004R|CACNA1C_uc001qjz.2_Silent_p.R1004R|CACNA1C_uc001qkd.2_Silent_p.R1004R|CACNA1C_uc001qkg.2_Silent_p.R1004R|CACNA1C_uc009zdw.1_Silent_p.R1004R|CACNA1C_uc001qkh.2_Silent_p.R1004R|CACNA1C_uc001qkl.2_Silent_p.R1024R|CACNA1C_uc001qkn.2_Silent_p.R1004R|CACNA1C_uc001qko.2_Silent_p.R1024R|CACNA1C_uc001qkp.2_Silent_p.R1004R|CACNA1C_uc001qkr.2_Silent_p.R1004R|CACNA1C_uc001qku.2_Silent_p.R1004R|CACNA1C_uc001qkq.2_Silent_p.R1004R|CACNA1C_uc001qks.2_Silent_p.R1004R|CACNA1C_uc001qkt.2_Silent_p.R1004R|CACNA1C_uc001qka.1_Silent_p.R539R|CACNA1C_uc001qki.1_Silent_p.R740R|CACNA1C_uc001qkj.1_Silent_p.R740R|CACNA1C_uc001qkk.1_Silent_p.R740R|CACNA1C_uc001qkm.1_Silent_p.R740R	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1024	III.|Helical; Name=S4 of repeat III; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GAGTACTCAGGCCCCTGAGGG	0.592													7	50					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2716282	2716283	+	Missense_Mutation	DNP	CG	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2716282_2716283CG>TA	uc009zdu.1	+	27	3715_3716	c.3402_3403CG>TA	c.(3400-3405)TTCGAA>TTTAAA	p.E1135K	CACNA1C_uc009zdv.1_Missense_Mutation_p.E1112K|CACNA1C_uc001qkb.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qkc.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qke.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qkf.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qjz.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qkd.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qkg.2_Missense_Mutation_p.E1115K|CACNA1C_uc009zdw.1_Missense_Mutation_p.E1115K|CACNA1C_uc001qkh.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qkl.2_Missense_Mutation_p.E1135K|CACNA1C_uc001qkn.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qko.2_Missense_Mutation_p.E1135K|CACNA1C_uc001qkp.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qkr.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qku.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qkq.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qks.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qkt.2_Missense_Mutation_p.E1115K|CACNA1C_uc001qka.1_Missense_Mutation_p.E650K|CACNA1C_uc001qki.1_Missense_Mutation_p.E851K|CACNA1C_uc001qkj.1_Missense_Mutation_p.E851K|CACNA1C_uc001qkk.1_Missense_Mutation_p.E851K|CACNA1C_uc001qkm.1_Missense_Mutation_p.E851K	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1135	Extracellular (Potential).|III.|Dihydropyridine binding (By similarity).	Calcium ion selectivity and permeability.		E->K: Loss of selectivity for divalent over monovalent cations.	axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCTCCACCTTCGAAGGGTGGCC	0.54													6	18					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2717815	2717815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2717815C>T	uc009zdu.1	+	28	3868	c.3555C>T	c.(3553-3555)GTC>GTT	p.V1185V	CACNA1C_uc009zdv.1_Silent_p.V1162V|CACNA1C_uc001qkb.2_Silent_p.V1165V|CACNA1C_uc001qkc.2_Silent_p.V1165V|CACNA1C_uc001qke.2_Silent_p.V1165V|CACNA1C_uc001qkf.2_Silent_p.V1165V|CACNA1C_uc001qjz.2_Silent_p.V1165V|CACNA1C_uc001qkd.2_Silent_p.V1165V|CACNA1C_uc001qkg.2_Silent_p.V1165V|CACNA1C_uc009zdw.1_Silent_p.V1165V|CACNA1C_uc001qkh.2_Silent_p.V1165V|CACNA1C_uc001qkl.2_Silent_p.V1185V|CACNA1C_uc001qkn.2_Silent_p.V1165V|CACNA1C_uc001qko.2_Silent_p.V1185V|CACNA1C_uc001qkp.2_Silent_p.V1165V|CACNA1C_uc001qkr.2_Silent_p.V1165V|CACNA1C_uc001qku.2_Silent_p.V1165V|CACNA1C_uc001qkq.2_Silent_p.V1165V|CACNA1C_uc001qks.2_Silent_p.V1165V|CACNA1C_uc001qkt.2_Silent_p.V1165V|CACNA1C_uc001qka.1_Silent_p.V700V|CACNA1C_uc001qki.1_Silent_p.V901V|CACNA1C_uc001qkj.1_Silent_p.V901V|CACNA1C_uc001qkk.1_Silent_p.V901V|CACNA1C_uc001qkm.1_Silent_p.V901V	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1185	III.|Helical; Name=S6 of repeat III; (Potential).|Dihydropyridine binding (By similarity).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	tgggcttcgtcatcgtcaccT	0.353													12	37					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2778188	2778188	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2778188G>A	uc009zdu.1	+	40	5170	c.4857G>A	c.(4855-4857)AGG>AGA	p.R1619R	CACNA1C_uc009zdv.1_Silent_p.R1568R|CACNA1C_uc001qkb.2_Silent_p.R1571R|CACNA1C_uc001qkc.2_Silent_p.R1571R|CACNA1C_uc001qke.2_Silent_p.R1560R|CACNA1C_uc001qkf.2_Silent_p.R1560R|CACNA1C_uc001qjz.2_Silent_p.R1571R|CACNA1C_uc001qkd.2_Silent_p.R1571R|CACNA1C_uc001qkg.2_Silent_p.R1558R|CACNA1C_uc009zdw.1_Silent_p.R1593R|CACNA1C_uc001qkh.2_Silent_p.R1560R|CACNA1C_uc001qkl.2_Silent_p.R1619R|CACNA1C_uc001qkn.2_Silent_p.R1571R|CACNA1C_uc001qko.2_Silent_p.R1591R|CACNA1C_uc001qkp.2_Silent_p.R1571R|CACNA1C_uc001qkr.2_Silent_p.R1588R|CACNA1C_uc001qku.2_Silent_p.R1571R|CACNA1C_uc001qkq.2_Silent_p.R1599R|CACNA1C_uc001qks.2_Silent_p.R1571R|CACNA1C_uc001qkt.2_Silent_p.R1571R|CACNA1C_uc001qki.1_Silent_p.R1307R|CACNA1C_uc001qkj.1_Silent_p.R1307R|CACNA1C_uc001qkk.1_Silent_p.R1307R|CACNA1C_uc001qkm.1_Silent_p.R1296R|CACNA1C_uc010sea.1_Silent_p.R262R	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1619	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CGGCCCTGAGGATCAAAACAG	0.572													40	80					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2786312	2786312	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2786312C>T	uc009zdu.1	+	42	5338	c.5025C>T	c.(5023-5025)TAC>TAT	p.Y1675Y	CACNA1C_uc009zdv.1_Silent_p.Y1624Y|CACNA1C_uc001qkb.2_Silent_p.Y1627Y|CACNA1C_uc001qkc.2_Silent_p.Y1646Y|CACNA1C_uc001qke.2_Silent_p.Y1616Y|CACNA1C_uc001qkf.2_Silent_p.Y1635Y|CACNA1C_uc001qjz.2_Silent_p.Y1627Y|CACNA1C_uc001qkd.2_Silent_p.Y1646Y|CACNA1C_uc001qkg.2_Silent_p.Y1633Y|CACNA1C_uc009zdw.1_Silent_p.Y1668Y|CACNA1C_uc001qkh.2_Silent_p.Y1635Y|CACNA1C_uc001qkl.2_Silent_p.Y1675Y|CACNA1C_uc001qkn.2_Silent_p.Y1627Y|CACNA1C_uc001qko.2_Silent_p.Y1647Y|CACNA1C_uc001qkp.2_Silent_p.Y1627Y|CACNA1C_uc001qkr.2_Silent_p.Y1644Y|CACNA1C_uc001qku.2_Silent_p.Y1627Y|CACNA1C_uc001qkq.2_Silent_p.Y1655Y|CACNA1C_uc001qks.2_Silent_p.Y1627Y|CACNA1C_uc001qkt.2_Silent_p.Y1646Y|CACNA1C_uc001qki.1_Silent_p.Y1363Y|CACNA1C_uc001qkj.1_Silent_p.Y1363Y|CACNA1C_uc001qkk.1_Silent_p.Y1363Y|CACNA1C_uc001qkm.1_Silent_p.Y1352Y|CACNA1C_uc010sea.1_Silent_p.Y318Y|uc001qkx.1_RNA|CACNA1C_uc001qky.1_5'Flank	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1675	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCCAGGAGTACTTCCGGAAGT	0.607													11	22					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2786979	2786979	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2786979G>A	uc009zdu.1	+	43	5494	c.5181G>A	c.(5179-5181)CTG>CTA	p.L1727L	CACNA1C_uc009zdv.1_Silent_p.L1676L|CACNA1C_uc001qkb.2_Silent_p.L1679L|CACNA1C_uc001qkc.2_Silent_p.L1698L|CACNA1C_uc001qke.2_Silent_p.L1668L|CACNA1C_uc001qkf.2_Silent_p.L1687L|CACNA1C_uc001qjz.2_Silent_p.L1679L|CACNA1C_uc001qkd.2_Silent_p.L1698L|CACNA1C_uc001qkg.2_Silent_p.L1685L|CACNA1C_uc009zdw.1_Silent_p.L1720L|CACNA1C_uc001qkh.2_Silent_p.L1687L|CACNA1C_uc001qkl.2_Silent_p.L1727L|CACNA1C_uc001qkn.2_Silent_p.L1679L|CACNA1C_uc001qko.2_Silent_p.L1699L|CACNA1C_uc001qkp.2_Silent_p.L1679L|CACNA1C_uc001qkr.2_Silent_p.L1696L|CACNA1C_uc001qku.2_Silent_p.L1679L|CACNA1C_uc001qkq.2_Silent_p.L1707L|CACNA1C_uc001qks.2_Silent_p.L1679L|CACNA1C_uc001qkt.2_Silent_p.L1698L|CACNA1C_uc001qki.1_Silent_p.L1415L|CACNA1C_uc001qkj.1_Silent_p.L1415L|CACNA1C_uc001qkk.1_Silent_p.L1415L|CACNA1C_uc001qkm.1_Silent_p.L1404L|CACNA1C_uc010sea.1_Silent_p.L370L|uc001qkx.1_RNA|CACNA1C_uc001qky.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1727	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGGAGGAGCTGGACAAGGCCA	0.577													16	45					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2795344	2795344	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2795344C>T	uc009zdu.1	+	48	6255	c.5942C>T	c.(5941-5943)TCC>TTC	p.S1981F	CACNA1C_uc009zdv.1_Missense_Mutation_p.S1895F|CACNA1C_uc001qkb.2_Missense_Mutation_p.S1898F|CACNA1C_uc001qkc.2_Missense_Mutation_p.S1917F|CACNA1C_uc001qke.2_Missense_Mutation_p.S1887F|CACNA1C_uc001qkf.2_Missense_Mutation_p.S1906F|CACNA1C_uc001qjz.2_Missense_Mutation_p.S1898F|CACNA1C_uc001qkd.2_Missense_Mutation_p.S1917F|CACNA1C_uc001qkg.2_Missense_Mutation_p.S1904F|CACNA1C_uc009zdw.1_Missense_Mutation_p.S1939F|CACNA1C_uc001qkh.2_Missense_Mutation_p.S1906F|CACNA1C_uc001qkl.2_Missense_Mutation_p.S1946F|CACNA1C_uc001qkn.2_Missense_Mutation_p.S1898F|CACNA1C_uc001qko.2_Missense_Mutation_p.S1918F|CACNA1C_uc001qkp.2_Missense_Mutation_p.S1898F|CACNA1C_uc001qkr.2_Missense_Mutation_p.S1915F|CACNA1C_uc001qku.2_Missense_Mutation_p.S1933F|CACNA1C_uc001qkq.2_Missense_Mutation_p.S1926F|CACNA1C_uc001qks.2_Missense_Mutation_p.S1898F|CACNA1C_uc001qkt.2_Missense_Mutation_p.S1917F|CACNA1C_uc001qki.1_Missense_Mutation_p.S1705F|CACNA1C_uc001qkj.1_Missense_Mutation_p.S1669F|CACNA1C_uc001qkk.1_Missense_Mutation_p.S1634F|CACNA1C_uc001qkm.1_Missense_Mutation_p.S1694F|CACNA1C_uc010sea.1_Missense_Mutation_p.S589F|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Missense_Mutation_p.S216F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1981	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CGAAGGGCCTCCTTCCACCTG	0.582													36	87					0	0	1	0	0
NRIP2	83714	broad.mit.edu	37	12	2936434	2936434	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2936434C>T	uc001qlc.2	-	6	857	c.785G>A	c.(784-786)CGG>CAG	p.R262Q	ITFG2_uc010sec.1_Intron|NRIP2_uc010sed.1_Missense_Mutation_p.R262Q	NM_031474	NP_113662	Q9BQI9	NRIP2_HUMAN	nuclear receptor interacting protein 2	262					proteolysis|transcription, DNA-dependent	cytoplasm|nucleus	aspartic-type endopeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			GGCTTTCAGCCGCAGCACTCC	0.622													12	24					0	0	1	0	0
FOXM1	2305	broad.mit.edu	37	12	2983188	2983188	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2983188G>A	uc001qlf.2	-	2	722	c.457C>T	c.(457-459)CCT>TCT	p.P153S	FOXM1_uc001qle.2_Missense_Mutation_p.P153S|FOXM1_uc001qlg.2_Missense_Mutation_p.P153S|FOXM1_uc009zea.2_Missense_Mutation_p.P153S|FOXM1_uc009zeb.2_Missense_Mutation_p.P153S	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	153					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			GGTGGTCTAGGAAGATTCACA	0.557													16	123					0	0	1	0	0
FOXM1	2305	broad.mit.edu	37	12	2983282	2983282	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:2983282G>A	uc001qlf.2	-	2	628	c.363C>T	c.(361-363)CTC>CTT	p.L121L	FOXM1_uc001qle.2_Silent_p.L121L|FOXM1_uc001qlg.2_Silent_p.L121L|FOXM1_uc009zea.2_Silent_p.L121L|FOXM1_uc009zeb.2_Silent_p.L121L	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	121					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			TTTGAGGCCGGAGTCCTGGAG	0.542													36	99					0	0	1	0	0
TULP3	7289	broad.mit.edu	37	12	3040254	3040254	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:3040254C>T	uc010seh.1	+	6	625	c.544C>T	c.(544-546)CTG>TTG	p.L182L	TULP3_uc010sef.1_RNA|TULP3_uc009zec.1_5'UTR|TULP3_uc010seg.1_RNA|TULP3_uc001qlj.2_Silent_p.L182L|TULP3_uc010sei.1_Silent_p.L39L	NM_003324	NP_003315	O75386	TULP3_HUMAN	tubby like protein 3 isoform 1	182					G-protein coupled receptor protein signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|extracellular region|nucleus|plasma membrane	phosphatidylinositol-4,5-bisphosphate binding				0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			TGATAACCTCCTGGGAGACAT	0.512													38	86					0	0	1	0	0
TSPAN9	10867	broad.mit.edu	37	12	3387589	3387589	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:3387589C>T	uc001qlp.2	+	4	213	c.66C>T	c.(64-66)CTC>CTT	p.L22L		NM_006675	NP_006666	O75954	TSN9_HUMAN	tetraspanin 9	22	Helical; (Potential).					integral to plasma membrane|membrane fraction				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00153)|COAD - Colon adenocarcinoma(12;0.0831)			CTTTCCAGCTCTGTGGCTGTG	0.602													42	116					0	0	1	0	0
PRMT8	56341	broad.mit.edu	37	12	3659212	3659212	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:3659212C>T	uc001qmf.2	+	3	739	c.372C>T	c.(370-372)ATC>ATT	p.I124I	PRMT8_uc009zed.2_Silent_p.I115I|PRMT8_uc009zee.1_RNA	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	124					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			GTACTGGGATCCTTTCCATGT	0.572													49	91					0	0	1	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3757657	3757657	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:3757657C>T	uc001qmj.2	-	11	1741	c.1169G>A	c.(1168-1170)GGG>GAG	p.G390E	EFCAB4B_uc010sen.1_Intron|EFCAB4B_uc010seo.1_Intron|EFCAB4B_uc001qmi.1_RNA	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	390					activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			TCCTTCCGACCCCAGGCTTCT	0.592													16	47					0	0	1	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3782725	3782725	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:3782725C>T	uc001qmj.2	-	7	1130	c.558G>A	c.(556-558)CTG>CTA	p.L186L	EFCAB4B_uc010sen.1_Silent_p.L186L|EFCAB4B_uc010seo.1_Silent_p.L186L|EFCAB4B_uc001qmi.1_RNA	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	186					activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			CCTCCTTCTTCAGCTGCAACC	0.493													33	69					0	0	1	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3788206	3788206	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:3788206G>A	uc001qmj.2	-	6	971	c.399C>T	c.(397-399)GCC>GCT	p.A133A	EFCAB4B_uc010sen.1_Silent_p.A133A|EFCAB4B_uc010seo.1_Silent_p.A133A	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	133					activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			CATGGCGCTGGGCCACCTGTT	0.557													15	95					0	0	1	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3806148	3806148	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:3806148C>T	uc001qmj.2	-	4	590	c.18G>A	c.(16-18)GGG>GGA	p.G6G	EFCAB4B_uc010sen.1_Silent_p.G6G|EFCAB4B_uc010seo.1_Silent_p.G6G	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	6					activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			AGACTACCCTCCCGTCAGGGG	0.572													10	16					0	0	1	0	0
CCND2	894	broad.mit.edu	37	12	4387925	4387925	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4387925G>A	uc001qmo.2	+	3	717	c.412_splice	c.e3-1	p.E138_splice		NM_001759	NP_001750	P30279	CCND2_HUMAN	cyclin D2						cell division|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation	cyclin-dependent protein kinase holoenzyme complex|cytoplasm|membrane|nucleus	protein kinase binding			haematopoietic_and_lymphoid_tissue(1)|breast(1)|kidney(1)	3			all cancers(3;4.15e-10)|GBM - Glioblastoma multiforme(3;6.34e-05)|Colorectal(7;0.00245)|OV - Ovarian serous cystadenocarcinoma(31;0.00301)|COAD - Colon adenocarcinoma(12;0.0264)|STAD - Stomach adenocarcinoma(119;0.206)			TTCCCCTCCAGGAGTGGGAAC	0.572			T	IGL@	NHL,CLL								10	79					0	0	1	0	0
FGF23	8074	broad.mit.edu	37	12	4479590	4479590	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4479590C>T	uc001qmq.1	-	3	821	c.675G>A	c.(673-675)GGG>GGA	p.G225G		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	225					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			CCCTGACCACCCCTAATGGGT	0.697													14	43					0	0	1	0	0
FGF23	8074	broad.mit.edu	37	12	4479935	4479935	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4479935C>T	uc001qmq.1	-	3	476	c.330G>A	c.(328-330)CCG>CCA	p.P110P		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	110					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			TGCAGTTCTCCGGGTCGAAAT	0.607													15	85					0	0	1	0	0
FGF6	2251	broad.mit.edu	37	12	4553315	4553315	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4553315C>T	uc001qmr.1	-	2	478	c.434G>A	c.(433-435)GGA>GAA	p.G145E		NM_020996	NP_066276	P10767	FGF6_HUMAN	fibroblast growth factor 6 precursor	145					angiogenesis|cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	growth factor activity			lung(2)|ovary(1)	3			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)			GTACAATCTTCCTTTACTGTT	0.488													17	38					0	0	1	0	0
RAD51AP1	10635	broad.mit.edu	37	12	4662197	4662198	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4662197_4662198AC>TT	uc001qmw.2	+	8	812_813	c.656_657AC>TT	c.(655-657)GAC>GTT	p.D219V	RAD51AP1_uc001qmu.2_Missense_Mutation_p.D202V|RAD51AP1_uc001qmv.2_Missense_Mutation_p.D165V|RAD51AP1_uc010sep.1_Missense_Mutation_p.D84V|RAD51AP1_uc010seq.1_Missense_Mutation_p.D84V|RAD51AP1_uc009zeg.2_RNA	NM_001130862	NP_001124334	Q96B01	R51A1_HUMAN	RAD51 associated protein 1 isoform a	219					double-strand break repair via homologous recombination		double-stranded DNA binding|protein binding|protein binding|RNA binding|single-stranded DNA binding				0			Colorectal(7;0.00306)|COAD - Colon adenocarcinoma(12;0.0389)			GAGGATAATGACGAAGACTTCT	0.317													10	37					0	0	1	0	0
DYRK4	8798	broad.mit.edu	37	12	4705365	4705365	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4705365G>A	uc001qmx.2	+	5	493	c.333G>A	c.(331-333)GGG>GGA	p.G111G	DYRK4_uc009zeh.1_Silent_p.G226G|DYRK4_uc001qmy.1_Silent_p.G111G	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	111	ATP (By similarity).|Protein kinase.					Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			AGACAATCGGGAAGGGGTCCT	0.547													55	96					0	0	1	0	0
DYRK4	8798	broad.mit.edu	37	12	4705767	4705767	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4705767G>A	uc001qmx.2	+	6	592	c.432G>A	c.(430-432)CAG>CAA	p.Q144Q	DYRK4_uc009zeh.1_Silent_p.Q259Q|DYRK4_uc001qmy.1_Silent_p.Q144Q	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	144	Protein kinase.					Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			TTCACCAGCAGGCCCTGATGG	0.522													17	24					0	0	1	0	0
AKAP3	10566	broad.mit.edu	37	12	4736418	4736418	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4736418G>A	uc001qnb.3	-	4	1879	c.1650C>T	c.(1648-1650)TTC>TTT	p.F550F		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	550					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						CAGCTTCAACGAAGCTCCGTG	0.532													17	40					0	0	1	0	0
NDUFA9	4704	broad.mit.edu	37	12	4796131	4796131	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4796131C>T	uc001qnc.2	+	11	1001	c.991C>T	c.(991-993)CAC>TAC	p.H331Y	NDUFA9_uc010ses.1_Missense_Mutation_p.H112Y	NM_005002	NP_004993	Q16795	NDUA9_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	331					mitochondrial electron transport, NADH to ubiquinone|sodium ion transport	mitochondrial matrix|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity|protein binding			ovary(1)	1					NADH(DB00157)	GAAATTGCCTCACCTGCCTGG	0.502													15	33					0	0	1	0	0
GALNT8	26290	broad.mit.edu	37	12	4835838	4835838	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4835838C>T	uc001qne.1	+	2	444	c.352C>T	c.(352-354)CTC>TTC	p.L118F		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	118	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						CCAAATGAAACTCTTCCCACA	0.507													11	26					0	0	1	0	0
GALNT8	26290	broad.mit.edu	37	12	4835910	4835910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4835910G>A	uc001qne.1	+	2	516	c.424G>A	c.(424-426)GAC>AAC	p.D142N		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	142	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						GGCGGCCCAGGACCTCTTCCG	0.552													21	49					0	0	1	0	0
GALNT8	26290	broad.mit.edu	37	12	4835915	4835915	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4835915C>T	uc001qne.1	+	2	521	c.429C>T	c.(427-429)CTC>CTT	p.L143L		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	143	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						CCCAGGACCTCTTCCGGAAGT	0.557													13	57					0	0	1	0	0
GALNT8	26290	broad.mit.edu	37	12	4854665	4854665	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4854665C>T	uc001qne.1	+	5	1023	c.931C>T	c.(931-933)CGT>TGT	p.R311C		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	311	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						TGACAACATTCGTTTTGACAC	0.498													25	39					0	0	1	0	0
GALNT8	26290	broad.mit.edu	37	12	4872438	4872438	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4872438G>A	uc001qne.1	+	8	1471	c.1379G>A	c.(1378-1380)GGA>GAA	p.G460E		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	460	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						ATAGATTTTGGAGACGTTTCT	0.333													12	79					0	0	1	0	0
GALNT8	26290	broad.mit.edu	37	12	4873157	4873157	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4873157G>A	uc001qne.1	+	9	1629	c.1537G>A	c.(1537-1539)GGA>AGA	p.G513R		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	513	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						CTTGGATCAGGGACCCGTTCC	0.502													42	85					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4919366	4919366	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4919366G>A	uc001qng.2	+	1	1025	c.159G>A	c.(157-159)GAG>GAA	p.E53E		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	53						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TGCGCTTTGAGACACAATTGC	0.642										HNSCC(72;0.22)			31	47					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4919520	4919520	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4919520C>T	uc001qng.2	+	1	1179	c.313C>T	c.(313-315)CGC>TGC	p.R105C		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	105						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						GTCTGGGGGCCGCCTGCGGAG	0.657										HNSCC(72;0.22)			45	68					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4919910	4919910	+	Missense_Mutation	SNP	C	T	T	rs149897413		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4919910C>T	uc001qng.2	+	1	1569	c.703C>T	c.(703-705)CAT>TAT	p.H235Y		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	235						voltage-gated potassium channel complex	voltage-gated potassium channel activity	p.H235Y(1)		skin(2)|ovary(1)	3						CTACACATTTCATCATGGCAT	0.552										HNSCC(72;0.22)			28	118					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4920274	4920274	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4920274C>T	uc001qng.2	+	1	1933	c.1067C>T	c.(1066-1068)TCC>TTC	p.S356F		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	356	Helical; Voltage-sensor; Name=Segment S4; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TTCAAGCTCTCCCGCCACTCC	0.637										HNSCC(72;0.22)			7	27					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4920518	4920518	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:4920518C>T	uc001qng.2	+	1	2177	c.1311C>T	c.(1309-1311)ATC>ATT	p.I437I		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	437	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						GGGGAAAGATCGTGGGCTCGC	0.592										HNSCC(72;0.22)			25	69					0	0	1	0	0
KCNA1	3736	broad.mit.edu	37	12	5020937	5020937	+	Silent	SNP	G	A	A	rs142184899	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5020937G>A	uc001qnh.2	+	2	1498	c.393G>A	c.(391-393)CGG>CGA	p.R131R		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	131					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AGAAGTTCCGGGAGGACGAGG	0.652													40	65					0	0	1	0	0
KCNA1	3736	broad.mit.edu	37	12	5021113	5021113	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5021113C>T	uc001qnh.2	+	2	1674	c.569C>T	c.(568-570)CCC>CTC	p.P190L		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	190					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GAGACGCTCCCCGAGCTGAAG	0.572													23	63					0	0	1	0	0
KCNA1	3736	broad.mit.edu	37	12	5021806	5021806	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5021806G>A	uc001qnh.2	+	2	2367	c.1262G>A	c.(1261-1263)GGG>GAG	p.G421E		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	421					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GAAACTGAGGGGGAAGAGCAG	0.527													103	240					0	0	1	0	0
KCNA1	3736	broad.mit.edu	37	12	5021916	5021916	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5021916G>A	uc001qnh.2	+	2	2477	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	458					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CATGGAGATCGAAGAGGATAT	0.463													68	139					0	0	1	0	0
KCNA5	3741	broad.mit.edu	37	12	5153839	5153839	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5153839C>T	uc001qni.2	+	1	755	c.526C>T	c.(526-528)CTC>TTC	p.L176F		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	176						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						CGACGGTATCCTCTACTACTA	0.652													8	73					0	0	1	0	0
KCNA5	3741	broad.mit.edu	37	12	5154105	5154105	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5154105C>T	uc001qni.2	+	1	1021	c.792C>T	c.(790-792)ATC>ATT	p.I264I		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	264	Helical; Name=Segment S1; (Potential).					Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						TCATCTCCATCATCACCTTCT	0.647													20	147					0	0	1	0	0
NTF3	4908	broad.mit.edu	37	12	5603410	5603410	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5603410C>T	uc001qnl.3	+	1	113	c.30C>T	c.(28-30)CTC>CTT	p.L10L	NTF3_uc001qnk.3_Silent_p.L23L	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	10					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						TGATATTTCTCGCTTATCTCC	0.433													26	69					0	0	1	0	0
NTF3	4908	broad.mit.edu	37	12	5603722	5603722	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5603722C>T	uc001qnl.3	+	1	425	c.342C>T	c.(340-342)CCC>CCT	p.P114P	NTF3_uc001qnk.3_Silent_p.P127P	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	114					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						CCTTGGAGCCCCCGCCCTTGT	0.612													21	71					0	0	1	0	0
NTF3	4908	broad.mit.edu	37	12	5603770	5603770	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5603770G>A	uc001qnl.3	+	1	473	c.390G>A	c.(388-390)GCG>GCA	p.A130A	NTF3_uc001qnk.3_Silent_p.A143A	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	130					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						CCGTGGTGGCGAACAGAACAT	0.602													20	82					0	0	1	0	0
NTF3	4908	broad.mit.edu	37	12	5603793	5603793	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5603793G>A	uc001qnl.3	+	1	496	c.413G>A	c.(412-414)CGG>CAG	p.R138Q	NTF3_uc001qnk.3_Missense_Mutation_p.R151Q	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	138					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						CGGCGGAAACGGTACGCGGAG	0.602													33	66					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5672668	5672668	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5672668C>T	uc001qnm.2	-	26	2866	c.2794G>A	c.(2794-2796)GAC>AAC	p.D932N		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	937	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TTGATCTGGTCGCTGATGTCC	0.527													11	63					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5674779	5674779	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5674779G>A	uc001qnm.2	-	25	2744	c.2672C>T	c.(2671-2673)TCG>TTG	p.S891L		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	896	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GTACTGTTTCGAAAACTCATA	0.502													5	7					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5687648	5687648	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5687648G>A	uc001qnm.2	-	22	2342	c.2270C>T	c.(2269-2271)TCC>TTC	p.S757F		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	762	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CAGGGGAAAGGAGGCCACGAA	0.542													4	24					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5708755	5708755	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5708755C>T	uc001qnm.2	-	21	2200	c.2128G>A	c.(2128-2130)GAA>AAA	p.E710K		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	715	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TCTCCAGCTTCGGTCTCATCT	0.453													34	78					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5724456	5724456	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5724456C>T	uc001qnm.2	-	18	1896	c.1824G>A	c.(1822-1824)CCG>CCA	p.P608P		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	613	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GTTCTGTTTTCGGAACCTCTG	0.458													8	26					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5744379	5744379	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5744379G>A	uc001qnm.2	-	17	1827	c.1755C>T	c.(1753-1755)CTC>CTT	p.L585L		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	590	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GGATGACCACGAGGTTGATGA	0.532													5	18					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5941682	5941682	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:5941682G>A	uc001qnm.2	-	5	781	c.709C>T	c.(709-711)CCA>TCA	p.P237S		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	242	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CTGTGTTCTGGAACTCGGGGC	0.507													20	50					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	6030491	6030491	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6030491C>T	uc001qnm.2	-	3	309	c.237G>A	c.(235-237)TTG>TTA	p.L79L		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	83	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GACGGGCCTCCAAGGACACAG	0.562													10	44					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	6031893	6031893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6031893C>T	uc001qnm.2	-	2	160	c.88G>A	c.(88-90)GGA>AGA	p.G30R		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	34	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CACTGCTGTCCATGTTTGGGG	0.662													4	12					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6058963	6058963	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6058963G>A	uc001qnn.1	-	51	8492	c.8242C>T	c.(8242-8244)CAC>TAC	p.H2748Y	VWF_uc010set.1_3'UTR	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2748	CTCK.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TGGCAGTAGTGGATATCCACC	0.522													25	90					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6078444	6078444	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6078444G>A	uc001qnn.1	-	45	7912	c.7662C>T	c.(7660-7662)GTC>GTT	p.V2554V	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2554					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GGCAGACAGGGACCTCCAGCT	0.617													10	39					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6125769	6125769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6125769C>T	uc001qnn.1	-	30	5474	c.5224G>A	c.(5224-5226)GAC>AAC	p.D1742N	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1742	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CATGGCACGTCAATGGTGGTG	0.542													30	49					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6125817	6125817	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6125817G>A	uc001qnn.1	-	30	5426	c.5176C>T	c.(5176-5178)CGT>TGT	p.R1726C	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1726	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TGAGTGAGACGAGGCCCTAAA	0.527													22	68					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6128044	6128044	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6128044A>G	uc001qnn.1	-	28	4790	c.4540T>C	c.(4540-4542)TTC>CTC	p.F1514L	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1514	VWFA 2.		F -> C (in VWD2).		blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTCCTGTTGAAGTCGGCTTCA	0.572													7	41					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6128444	6128444	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6128444G>A	uc001qnn.1	-	28	4390	c.4140C>T	c.(4138-4140)ATC>ATT	p.I1380I	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1380	VWFA 1; binding site for platelet glycoprotein Ib.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GGAGCAGGGTGATGCGGGAGG	0.582													15	62					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6128845	6128845	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6128845G>A	uc001qnn.1	-	28	3989	c.3739C>T	c.(3739-3741)CCC>TCC	p.P1247S	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1247					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GCATCTGTGGGAGGCACCACC	0.567													13	24					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6167147	6167147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6167147C>T	uc001qnn.1	-	14	1847	c.1597G>A	c.(1597-1599)GAC>AAC	p.D533N	VWF_uc010set.1_Missense_Mutation_p.D533N	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	533	VWFD 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding	p.D533D(1)		skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	AGGAAGTCGTCGCCCTGGTTG	0.662													34	86					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6180466	6180466	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6180466G>A	uc001qnn.1	-	10	1403	c.1153C>T	c.(1153-1155)CCA>TCA	p.P385S	VWF_uc010set.1_Missense_Mutation_p.P385S	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	385					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CGCCTACCTGGACATTCTTCA	0.542													16	35					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6181520	6181520	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6181520G>A	uc001qnn.1	-	9	1336	c.1086C>T	c.(1084-1086)TCC>TCT	p.S362S	VWF_uc010set.1_Silent_p.S362S	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	362					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTCGAGAGAGGGAGGTGCCGG	0.657													20	44					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6184597	6184597	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6184597C>T	uc001qnn.1	-	7	1028	c.778G>A	c.(778-780)GGG>AGG	p.G260R	VWF_uc010set.1_Missense_Mutation_p.G260R	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	260					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CACTCCAGCCCCCCAGCACAC	0.642													8	52					0	0	1	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6422854	6422854	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6422854C>T	uc001qnr.2	+	3	346	c.198C>T	c.(196-198)GCC>GCT	p.A66A	PLEKHG6_uc001qns.2_Silent_p.A66A|PLEKHG6_uc010sew.1_Silent_p.A66A|PLEKHG6_uc010sex.1_Silent_p.A34A	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	66					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						CTGGCCAGGCCCGAGGCCTGT	0.642													30	66					0	0	1	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6422908	6422908	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6422908G>A	uc001qnr.2	+	3	400	c.252G>A	c.(250-252)GGG>GGA	p.G84G	PLEKHG6_uc001qns.2_Silent_p.G84G|PLEKHG6_uc010sew.1_Silent_p.G84G|PLEKHG6_uc010sex.1_Silent_p.G52G	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	84					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						AGAGGCACGGGGGCCATGTGG	0.642													7	61					0	0	1	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6428018	6428018	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6428018C>T	uc001qnr.2	+	12	1531	c.1383C>T	c.(1381-1383)CTC>CTT	p.L461L	PLEKHG6_uc001qns.2_Silent_p.L461L|PLEKHG6_uc010sew.1_Silent_p.L461L|PLEKHG6_uc010sex.1_Silent_p.L429L	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	461	PH.				regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						TGGAGAAGCTCGTGTGCCAAC	0.582													12	46					0	0	1	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6435711	6435711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6435711G>A	uc001qnr.2	+	14	1790	c.1642G>A	c.(1642-1644)GAG>AAG	p.E548K	PLEKHG6_uc010sew.1_Missense_Mutation_p.E548K|PLEKHG6_uc010sex.1_Missense_Mutation_p.E516K	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	548					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						GCCTTCCCTGGAGGGCTCTCA	0.607													8	30					0	0	1	0	0
TNFRSF1A	7132	broad.mit.edu	37	12	6439002	6439002	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6439002G>A	uc001qnu.2	-	9	1280	c.999C>T	c.(997-999)CCC>CCT	p.P333P	TNFRSF1A_uc001qnt.2_Silent_p.P225P|TNFRSF1A_uc010sey.1_Silent_p.P101P|TNFRSF1A_uc010sez.1_Silent_p.P225P|TNFRSF1A_uc009zek.2_Silent_p.P290P	NM_001065	NP_001056	P19438	TNR1A_HUMAN	tumor necrosis factor receptor 1 precursor	333	Cytoplasmic (Potential).				apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|inflammatory response|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of inflammatory response|positive regulation of transcription from RNA polymerase II promoter|prostaglandin metabolic process	extracellular region|integral to plasma membrane|membrane raft	tumor necrosis factor receptor activity			lung(2)|skin(1)	3						GGTTGGGGATGGGGTCGGAGG	0.667													5	6					0	0	1	0	0
TNFRSF1A	7132	broad.mit.edu	37	12	6440044	6440044	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6440044C>T	uc001qnu.2	-	6	881	c.600G>A	c.(598-600)GAG>GAA	p.E200E	TNFRSF1A_uc001qnt.2_Silent_p.E92E|TNFRSF1A_uc010sey.1_5'UTR|TNFRSF1A_uc010sez.1_Silent_p.E92E|TNFRSF1A_uc009zek.2_Silent_p.E157E	NM_001065	NP_001056	P19438	TNR1A_HUMAN	tumor necrosis factor receptor 1 precursor	200	Extracellular (Potential).				apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|inflammatory response|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of inflammatory response|positive regulation of transcription from RNA polymerase II promoter|prostaglandin metabolic process	extracellular region|integral to plasma membrane|membrane raft	tumor necrosis factor receptor activity			lung(2)|skin(1)	3						CCTTAACATTCTCAATCTGGG	0.488													13	41					0	0	1	0	0
TNFRSF1A	7132	broad.mit.edu	37	12	6442295	6442295	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6442295G>A	uc001qnu.2	-	5	772	c.491C>T	c.(490-492)ACC>ATC	p.T164I	TNFRSF1A_uc001qnt.2_Missense_Mutation_p.T56I|TNFRSF1A_uc010sey.1_5'UTR|TNFRSF1A_uc010sez.1_Missense_Mutation_p.T56I|TNFRSF1A_uc009zek.2_Missense_Mutation_p.T121I|TNFRSF1A_uc010sfa.1_Missense_Mutation_p.T164I	NM_001065	NP_001056	P19438	TNR1A_HUMAN	tumor necrosis factor receptor 1 precursor	164	TNFR-Cys 3.|Extracellular (Potential).				apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|inflammatory response|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of inflammatory response|positive regulation of transcription from RNA polymerase II promoter|prostaglandin metabolic process	extracellular region|integral to plasma membrane|membrane raft	tumor necrosis factor receptor activity			lung(2)|skin(1)	3						GGTGCACACGGTGTTCTGTTT	0.557													9	32					0	0	1	0	0
SCNN1A	6337	broad.mit.edu	37	12	6457306	6457306	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6457306G>A	uc001qnx.2	-	13	2032	c.1743C>T	c.(1741-1743)TTC>TTT	p.F581F	SCNN1A_uc001qnv.2_Silent_p.F281F|SCNN1A_uc001qnw.2_Silent_p.F640F|SCNN1A_uc010sfb.1_Silent_p.F604F	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	581	Cytoplasmic (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	GCAGCATGAGGAACATGATGA	0.522													23	38					0	0	1	0	0
SCNN1A	6337	broad.mit.edu	37	12	6458118	6458118	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6458118C>T	uc001qnx.2	-	11	1840	c.1551G>A	c.(1549-1551)AAG>AAA	p.K517K	SCNN1A_uc001qnv.2_Silent_p.K217K|SCNN1A_uc001qnw.2_Silent_p.K576K|SCNN1A_uc010sfb.1_Silent_p.K540K	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	517	Extracellular (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	GGACTGACCTCTTGTTGTTGA	0.488													126	321					0	0	1	0	0
SCNN1A	6337	broad.mit.edu	37	12	6471258	6471258	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6471258G>A	uc001qnx.2	-	4	1123	c.834C>T	c.(832-834)TTC>TTT	p.F278F	SCNN1A_uc001qnv.2_5'UTR|SCNN1A_uc001qnw.2_Silent_p.F337F|SCNN1A_uc010sfb.1_Silent_p.F301F	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	278	Extracellular (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	AGGCGAAGATGAAGTTGCCCA	0.622													5	65					0	0	1	0	0
SCNN1A	6337	broad.mit.edu	37	12	6472692	6472692	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6472692G>A	uc001qnx.2	-	3	890	c.601C>T	c.(601-603)CGT>TGT	p.R201C	SCNN1A_uc001qnv.2_5'UTR|SCNN1A_uc001qnw.2_Missense_Mutation_p.R260C|SCNN1A_uc010sfb.1_Missense_Mutation_p.R224C	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	201	Extracellular (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	CGGGCTCGACGGGCCCCGTGA	0.667													12	21					0	0	1	0	0
SCNN1A	6337	broad.mit.edu	37	12	6483644	6483644	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6483644G>A	uc001qnx.2	-	2	595	c.306C>T	c.(304-306)TTC>TTT	p.F102F	SCNN1A_uc001qnw.2_Silent_p.F161F|SCNN1A_uc010sfb.1_Silent_p.F125F|LTBR_uc010sfc.1_5'Flank	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	102	Helical; (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	AAAGCAGGCCGAATTGCCAGT	0.587													9	68					0	0	1	0	0
CD27	939	broad.mit.edu	37	12	6554368	6554368	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6554368G>A	uc001qod.2	+	1	318	c.107G>A	c.(106-108)GGA>GAA	p.G36E	LOC678655_uc001qob.2_Intron|LOC678655_uc001qoc.2_Intron|LOC678655_uc009zel.1_Intron|CD27_uc001qoe.2_5'Flank	NM_001242	NP_001233	P26842	CD27_HUMAN	tumor necrosis factor receptor superfamily,	36	Extracellular (Potential).|TNFR-Cys 1.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|immunoglobulin mediated immune response|induction of apoptosis|positive regulation of B cell differentiation|positive regulation of JNK cascade|release of cytoplasmic sequestered NF-kappaB	extracellular region|integral to plasma membrane	caspase inhibitor activity|protein binding|transmembrane receptor activity				0						TGGGCTCAGGGAAAGCTGTGC	0.602													5	19					0	0	1	0	0
CD27	939	broad.mit.edu	37	12	6554699	6554699	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6554699G>A	uc001qod.2	+	2	457	c.246G>A	c.(244-246)GAG>GAA	p.E82E	LOC678655_uc001qob.2_Intron|LOC678655_uc001qoc.2_Intron|LOC678655_uc009zel.1_Intron|CD27_uc001qoe.2_5'UTR	NM_001242	NP_001233	P26842	CD27_HUMAN	tumor necrosis factor receptor superfamily,	82	Extracellular (Potential).|TNFR-Cys 2.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|immunoglobulin mediated immune response|induction of apoptosis|positive regulation of B cell differentiation|positive regulation of JNK cascade|release of cytoplasmic sequestered NF-kappaB	extracellular region|integral to plasma membrane	caspase inhibitor activity|protein binding|transmembrane receptor activity				0						CCCACTGTGAGAGCTGTCGGC	0.597													6	41					0	0	1	0	0
MRPL51	51258	broad.mit.edu	37	12	6601548	6601548	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6601548G>A	uc001qom.2	-	3	445	c.276C>T	c.(274-276)ATC>ATT	p.I92I	MRPL51_uc001qon.1_RNA|NCAPD2_uc009zen.1_5'Flank|NCAPD2_uc001qoo.2_5'Flank|NCAPD2_uc010sfd.1_5'Flank	NM_016497	NP_057581	Q4U2R6	RM51_HUMAN	mitochondrial ribosomal protein L51 precursor	92					translation	mitochondrial large ribosomal subunit	protein binding|structural constituent of ribosome				0						TCCTCTTTCGGATACAACGTT	0.443													88	283					0	0	1	0	0
MRPL51	51258	broad.mit.edu	37	12	6601615	6601615	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6601615G>A	uc001qom.2	-	3	378	c.209C>T	c.(208-210)CCC>CTC	p.P70L	MRPL51_uc001qon.1_RNA|NCAPD2_uc009zen.1_5'Flank|NCAPD2_uc001qoo.2_5'Flank|NCAPD2_uc010sfd.1_5'Flank	NM_016497	NP_057581	Q4U2R6	RM51_HUMAN	mitochondrial ribosomal protein L51 precursor	70					translation	mitochondrial large ribosomal subunit	protein binding|structural constituent of ribosome				0						CAGTTCTTTGGGGTGCTTTTC	0.443													98	156					0	0	1	0	0
NCAPD2	9918	broad.mit.edu	37	12	6623959	6623959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6623959C>T	uc001qoo.2	+	9	906	c.860C>T	c.(859-861)CCC>CTC	p.P287L	NCAPD2_uc009zen.1_Missense_Mutation_p.P159L|NCAPD2_uc010sfd.1_Missense_Mutation_p.P242L	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	287	Interactions with SMC2 and SMC4.				cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						CAAAAGTGTCCCCAAGAGCTG	0.478													23	71					0	0	1	0	0
NCAPD2	9918	broad.mit.edu	37	12	6635479	6635479	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6635479C>T	uc001qoo.2	+	20	2554	c.2508C>T	c.(2506-2508)CCC>CCT	p.P836P	NCAPD2_uc009zen.1_Silent_p.P708P|NCAPD2_uc010sfd.1_Silent_p.P791P	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	836					cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						GTCACCCCCCCTTCCGGCTGC	0.567													34	73					0	0	1	0	0
NOP2	4839	broad.mit.edu	37	12	6670901	6670901	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6670901G>A	uc001qph.1	-	11	1304	c.1124C>T	c.(1123-1125)GCC>GTC	p.A375V	NOP2_uc009zeq.1_Missense_Mutation_p.A91V|NOP2_uc001qpi.1_Missense_Mutation_p.A375V|NOP2_uc001qpj.1_Intron	NM_001033714	NP_001028886	P46087	NOP2_HUMAN	nucleolar protein 1, 120kDa	379					positive regulation of cell proliferation|rRNA processing	nucleolus	protein binding|RNA binding|S-adenosylmethionine-dependent methyltransferase activity			ovary(2)	2						GGGTGCCAAGGCCATGACGGG	0.607													4	22					0	0	1	0	0
LPAR5	57121	broad.mit.edu	37	12	6729468	6729468	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6729468C>T	uc009zer.2	-	2	1228	c.947G>A	c.(946-948)CGG>CAG	p.R316Q	LPAR5_uc001qps.2_Missense_Mutation_p.R316Q|LPAR5_uc010sff.1_Missense_Mutation_p.R316Q	NM_001142961	NP_001136433	Q9H1C0	LPAR5_HUMAN	lysophosphatidic acid receptor 5	316	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2						GGTCCTGGCCCGGTGCGGAGT	0.721													4	9					0	0	1	0	0
LPAR5	57121	broad.mit.edu	37	12	6730144	6730144	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6730144C>T	uc009zer.2	-	2	552	c.271G>A	c.(271-273)GAC>AAC	p.D91N	LPAR5_uc001qps.2_Missense_Mutation_p.D91N|LPAR5_uc010sff.1_Missense_Mutation_p.D91N	NM_001142961	NP_001136433	Q9H1C0	LPAR5_HUMAN	lysophosphatidic acid receptor 5	91	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2						CACAGGAGGTCGGGGAAGGGC	0.612													5	18					0	0	1	0	0
LPAR5	57121	broad.mit.edu	37	12	6730183	6730183	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6730183G>A	uc009zer.2	-	2	513	c.232C>T	c.(232-234)CGT>TGT	p.R78C	LPAR5_uc001qps.2_Missense_Mutation_p.R78C|LPAR5_uc010sff.1_Missense_Mutation_p.R78C	NM_001142961	NP_001136433	Q9H1C0	LPAR5_HUMAN	lysophosphatidic acid receptor 5	78	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2						TAGGAGAGACGAACGGGCAGC	0.632													8	20					0	0	1	0	0
LPAR5	57121	broad.mit.edu	37	12	6730251	6730251	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6730251G>A	uc009zer.2	-	2	445	c.164C>T	c.(163-165)TCG>TTG	p.S55L	LPAR5_uc001qps.2_Missense_Mutation_p.S55L|LPAR5_uc010sff.1_Missense_Mutation_p.S55L	NM_001142961	NP_001136433	Q9H1C0	LPAR5_HUMAN	lysophosphatidic acid receptor 5	55	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2						GCTCACCACCGAGTGCACGCG	0.662													5	28					0	0	1	0	0
ACRBP	84519	broad.mit.edu	37	12	6748162	6748162	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6748162G>A	uc001qpu.1	-	9	1515	c.1467C>T	c.(1465-1467)TCC>TCT	p.S489S	LPAR5_uc001qps.2_5'Flank|LPAR5_uc010sff.1_5'UTR|ACRBP_uc001qpt.1_5'Flank|ACRBP_uc010sfg.1_Silent_p.S456S	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	489						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						GGCTTTTGAAGGAACAGTAGT	0.532													9	97					0	0	1	0	0
ACRBP	84519	broad.mit.edu	37	12	6749241	6749241	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6749241C>T	uc001qpu.1	-	8	1458	c.1410G>A	c.(1408-1410)GGG>GGA	p.G470G	LPAR5_uc010sff.1_5'Flank|ACRBP_uc001qpt.1_5'Flank|ACRBP_uc010sfg.1_Silent_p.G437G	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	470						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						TAGGGAAATCCCCATCCTGGA	0.542													9	34					0	0	1	0	0
ACRBP	84519	broad.mit.edu	37	12	6752821	6752821	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6752821G>A	uc001qpu.1	-	6	1009	c.961C>T	c.(961-963)CAC>TAC	p.H321Y	ACRBP_uc010sfg.1_Missense_Mutation_p.H288Y	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	321						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						GCCTCTGTGTGGGGCAGCTGC	0.587													30	87					0	0	1	0	0
ACRBP	84519	broad.mit.edu	37	12	6752834	6752834	+	Silent	SNP	G	A	A	rs148058585		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6752834G>A	uc001qpu.1	-	6	996	c.948C>T	c.(946-948)CTC>CTT	p.L316L	ACRBP_uc010sfg.1_Silent_p.L283L	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	316				L -> F (in Ref. 1; BAB39388).		acrosomal vesicle|extracellular region				central_nervous_system(1)	1						GCAGCTGCAGGAGGCTGCAAG	0.587													23	79					0	0	1	0	0
ACRBP	84519	broad.mit.edu	37	12	6756023	6756023	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6756023C>T	uc001qpu.1	-	2	247	c.199G>A	c.(199-201)GGC>AGC	p.G67S	ACRBP_uc010sfg.1_Missense_Mutation_p.G67S	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	67						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						TTCCGGCAGCCGTGGGTTGCA	0.602													21	39					0	0	1	0	0
ING4	51147	broad.mit.edu	37	12	6761495	6761495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6761495G>A	uc001qpw.3	-	6	631	c.590C>T	c.(589-591)ACC>ATC	p.T197I	ING4_uc001qpv.3_Missense_Mutation_p.T196I|ING4_uc001qpy.3_Missense_Mutation_p.T193I|ING4_uc001qpx.3_Missense_Mutation_p.T194I|ING4_uc009zes.2_Intron|ING4_uc009zet.2_Missense_Mutation_p.T173I|ING4_uc009zeu.2_Intron|ING4_uc009zev.2_RNA	NM_001127582	NP_001121054	Q9UNL4	ING4_HUMAN	inhibitor of growth family, member 4 isoform 9	197	PHD-type.				apoptosis|cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell proliferation|negative regulation of growth|negative regulation of transcription, DNA-dependent|positive regulation of apoptosis	histone acetyltransferase complex	protein binding|transcription coactivator activity|zinc ion binding			central_nervous_system(3)|ovary(1)	4						AAGGCAATAGGTGGGTTCGTT	0.522													35	99					0	0	1	0	0
ZNF384	171017	broad.mit.edu	37	12	6781694	6781694	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6781694G>A	uc010sfh.1	-	8	1124	c.916C>T	c.(916-918)CAC>TAC	p.H306Y	ZNF384_uc001qpz.2_Intron|ZNF384_uc001qqa.2_Intron|ZNF384_uc001qqb.2_Intron|ZNF384_uc001qqc.2_Intron|ZNF384_uc001qqd.2_Intron|ZNF384_uc001qqe.2_Intron	NM_001135734	NP_001129206	Q8TF68	ZN384_HUMAN	nuclear matrix transcription factor 4 isoform d	306	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/ZNF384(4)	haematopoietic_and_lymphoid_tissue(4)|central_nervous_system(3)|kidney(1)	8						ATCTTGGAGTGGATCCTGCCG	0.607			T	EWSR1|TAF15 	ALL								14	31					0	0	1	0	0
CD4	920	broad.mit.edu	37	12	6924073	6924073	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6924073G>A	uc001qqv.1	+	5	767	c.522G>A	c.(520-522)CTG>CTA	p.L174L	CD4_uc009zez.1_Silent_p.L119L|CD4_uc009zfa.1_RNA|CD4_uc009zfb.1_RNA|CD4_uc010sfj.1_5'UTR|CD4_uc009zfc.1_5'UTR|CD4_uc010sfk.1_5'UTR|CD4_uc010sfl.1_5'UTR|CD4_uc010sfm.1_5'UTR	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	174	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				TGTCTCAGCTGGAGCTCCAGG	0.547													21	50					0	0	1	0	0
CD4	920	broad.mit.edu	37	12	6924124	6924124	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6924124G>A	uc001qqv.1	+	5	818	c.573G>A	c.(571-573)AAG>AAA	p.K191K	CD4_uc009zez.1_Silent_p.K136K|CD4_uc009zfa.1_RNA|CD4_uc009zfb.1_RNA|CD4_uc010sfj.1_5'UTR|CD4_uc009zfc.1_5'UTR|CD4_uc010sfk.1_5'UTR|CD4_uc010sfl.1_5'UTR|CD4_uc010sfm.1_5'UTR	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	191	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				AGAACCAGAAGAAGGTGGAGT	0.577													6	31					0	0	1	0	0
CD4	920	broad.mit.edu	37	12	6925289	6925289	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6925289C>T	uc001qqv.1	+	6	920	c.675C>T	c.(673-675)CTC>CTT	p.L225L	CD4_uc009zez.1_3'UTR|CD4_uc009zfa.1_RNA|CD4_uc009zfb.1_RNA|CD4_uc010sfj.1_5'UTR|CD4_uc009zfc.1_Silent_p.L46L|CD4_uc010sfk.1_5'UTR|CD4_uc010sfl.1_5'UTR|CD4_uc010sfm.1_5'UTR	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	225	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				CCTTCCCACTCGCCTTTACAG	0.562													39	71					0	0	1	0	0
CD4	920	broad.mit.edu	37	12	6925421	6925421	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6925421C>T	uc001qqv.1	+	6	1052	c.807C>T	c.(805-807)GAC>GAT	p.D269D	CD4_uc009zez.1_3'UTR|CD4_uc009zfa.1_RNA|CD4_uc009zfb.1_RNA|CD4_uc010sfj.1_5'UTR|CD4_uc009zfc.1_Silent_p.D90D|CD4_uc010sfk.1_5'UTR|CD4_uc010sfl.1_5'UTR|CD4_uc010sfm.1_5'UTR	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	269	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				TTACCCAGGACCCTAAGCTCC	0.587													25	95					0	0	1	0	0
CD4	920	broad.mit.edu	37	12	6926366	6926366	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6926366G>A	uc001qqv.1	+	7	1271	c.1026G>A	c.(1024-1026)TTG>TTA	p.L342L	CD4_uc010sfj.1_Silent_p.L69L|CD4_uc009zfc.1_Silent_p.L163L|CD4_uc010sfk.1_Silent_p.L69L|CD4_uc010sfl.1_Silent_p.L69L|CD4_uc010sfm.1_Silent_p.L69L	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	342	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				TGCTGAGTTTGAAACTGGAGA	0.567													7	21					0	0	1	0	0
GPR162	27239	broad.mit.edu	37	12	6933226	6933226	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6933226C>T	uc001qqw.1	+	2	697	c.162C>T	c.(160-162)TTC>TTT	p.F54F	GPR162_uc010sfn.1_Silent_p.F54F|GPR162_uc001qqx.1_Intron|GPR162_uc009zfd.1_Intron|GPR162_uc001qqy.1_5'Flank	NM_019858	NP_062832	Q16538	GP162_HUMAN	G protein-coupled receptor 162 isoform 2	54	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGCTCTGCTTCCTAGCGGGCA	0.612													6	38					0	0	1	0	0
GPR162	27239	broad.mit.edu	37	12	6936037	6936037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6936037C>T	uc001qqw.1	+	5	1970	c.1435C>T	c.(1435-1437)CTT>TTT	p.L479F	LEPREL2_uc001qqz.1_5'Flank|LEPREL2_uc001qra.1_5'Flank|LEPREL2_uc001qrb.1_5'Flank|GPR162_uc001qqx.1_Missense_Mutation_p.L195F|GPR162_uc009zfd.1_Missense_Mutation_p.L175F|GPR162_uc001qqy.1_Intron	NM_019858	NP_062832	Q16538	GP162_HUMAN	G protein-coupled receptor 162 isoform 2	479	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCTGGCCAGCCTTCGCCAATT	0.642													28	118					0	0	1	0	0
LEPREL2	10536	broad.mit.edu	37	12	6939120	6939120	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6939120G>A	uc001qra.1	+	4	630	c.596G>A	c.(595-597)CGA>CAA	p.R199Q	LEPREL2_uc001qqz.1_Missense_Mutation_p.R6Q|LEPREL2_uc001qrb.1_Missense_Mutation_p.R6Q|GPR162_uc001qqy.1_Missense_Mutation_p.R134Q	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	199					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	AAGTACAGACGAATGTCGGGA	0.592													15	101					0	0	1	0	0
LEPREL2	10536	broad.mit.edu	37	12	6941024	6941024	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6941024G>A	uc001qra.1	+	8	1192	c.1158G>A	c.(1156-1158)GAG>GAA	p.E386E	LEPREL2_uc001qqz.1_Silent_p.E193E|LEPREL2_uc001qrb.1_Silent_p.E193E	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	386					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CCCTGGGGGAGAAGAGGCAGC	0.612													7	10					0	0	1	0	0
LEPREL2	10536	broad.mit.edu	37	12	6943094	6943094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6943094C>T	uc001qra.1	+	11	1373	c.1339C>T	c.(1339-1341)CTT>TTT	p.L447F	LEPREL2_uc001qqz.1_Missense_Mutation_p.L254F|LEPREL2_uc001qrb.1_Missense_Mutation_p.L254F	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	447					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GGCAGATGTCCTTCTCCTGGA	0.642													21	79					0	0	1	0	0
LEPREL2	10536	broad.mit.edu	37	12	6946681	6946681	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6946681C>T	uc001qra.1	+	13	1689	c.1655C>T	c.(1654-1656)CCG>CTG	p.P552L	LEPREL2_uc001qqz.1_Missense_Mutation_p.P359L|LEPREL2_uc001qrb.1_Missense_Mutation_p.P359L	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	552					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TACTTCTCCCCGGAACGGCCC	0.657													5	14					0	0	1	0	0
LEPREL2	10536	broad.mit.edu	37	12	6948179	6948179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6948179C>T	uc001qra.1	+	16	1955	c.1921C>T	c.(1921-1923)CGC>TGC	p.R641C	LEPREL2_uc001qqz.1_Missense_Mutation_p.R448C|LEPREL2_uc001qrb.1_Missense_Mutation_p.R448C|GNB3_uc001qrc.2_5'Flank|GNB3_uc001qrd.2_5'Flank|GNB3_uc009zfe.2_5'Flank	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	641	Fe2OG dioxygenase.				negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GGTGCGTCCTCGCTGTGGGCG	0.657													10	26					0	0	1	0	0
GNB3	2784	broad.mit.edu	37	12	6952194	6952194	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6952194G>A	uc001qrd.2	+	5	562	c.157G>A	c.(157-159)GGA>AGA	p.G53R	GNB3_uc001qrc.2_Missense_Mutation_p.G9R|GNB3_uc009zfe.2_Missense_Mutation_p.G53R	NM_002075	NP_002066	P16520	GBB3_HUMAN	guanine nucleotide-binding protein, beta-3	53	WD 1.				cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of blood pressure|synaptic transmission	plasma membrane	GTPase activity|GTPase binding|signal transducer activity				0						GACGTTAAGGGGACACCTGGC	0.602													12	42					0	0	1	0	0
GNB3	2784	broad.mit.edu	37	12	6953077	6953077	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6953077G>A	uc001qrd.2	+	9	1039	c.634G>A	c.(634-636)GAT>AAT	p.D212N	GNB3_uc001qrc.2_Missense_Mutation_p.D168N|GNB3_uc009zfe.2_Missense_Mutation_p.D211N	NM_002075	NP_002066	P16520	GBB3_HUMAN	guanine nucleotide-binding protein, beta-3	212	WD 4.				cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of blood pressure|synaptic transmission	plasma membrane	GTPase activity|GTPase binding|signal transducer activity				0						CAAGCTCTGGGATGTGCGAGA	0.577													27	77					0	0	1	0	0
USP5	8078	broad.mit.edu	37	12	6966849	6966849	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:6966849C>T	uc001qri.3	+	7	885	c.826C>T	c.(826-828)CTG>TTG	p.L276L	USP5_uc001qrh.3_Silent_p.L276L	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	276					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						GGCTGAGCACCTGTCCCACTT	0.547													43	98					0	0	1	0	0
LRRC23	10233	broad.mit.edu	37	12	7014914	7014914	+	Silent	SNP	C	T	T	rs116430099	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7014914C>T	uc001qrt.3	+	2	509	c.117C>T	c.(115-117)TTC>TTT	p.F39F	LRRC23_uc001qrn.1_Silent_p.F39F|LRRC23_uc009zfg.2_Intron|LRRC23_uc001qrp.2_Silent_p.F39F|LRRC23_uc001qrq.2_Silent_p.F39F|LRRC23_uc001qrr.2_Missense_Mutation_p.S25F|LRRC23_uc001qrs.2_Missense_Mutation_p.S25F|LRRC23_uc009zfh.2_Silent_p.F39F	NM_001135217	NP_001128689	Q53EV4	LRC23_HUMAN	leucine rich repeat containing 23 isoform a	39										ovary(1)	1						gggaagagTTCCCTGAGGAAG	0.388													20	51					0	0	1	0	0
PTPN6	5777	broad.mit.edu	37	12	7064026	7064026	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7064026G>A	uc001qsb.2	+	4	627	c.385G>A	c.(385-387)GAG>AAG	p.E129K	PTPN6_uc001qsa.1_Missense_Mutation_p.E131K|PTPN6_uc010sfr.1_Missense_Mutation_p.E90K|PTPN6_uc009zfl.1_Missense_Mutation_p.E129K|PTPN6_uc010sfs.1_Missense_Mutation_p.E117K	NM_002831	NP_002822	P29350	PTN6_HUMAN	protein tyrosine phosphatase, non-receptor type	129	SH2 2.				apoptosis|cell junction assembly|G-protein coupled receptor protein signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|negative regulation of peptidyl-tyrosine phosphorylation|platelet activation|positive regulation of cell proliferation|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of G1/S transition of mitotic cell cycle|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol|membrane|nucleus	protein binding|protein tyrosine phosphatase activity			breast(1)	1						GGCCAAGGGCGAGCCCTGGAC	0.637													6	64					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7169850	7169850	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7169850C>T	uc001qsj.2	+	6	796	c.77C>T	c.(76-78)CCT>CTT	p.P26L	C1S_uc001qsk.2_Missense_Mutation_p.P26L|C1S_uc001qsl.2_Missense_Mutation_p.P26L|C1S_uc009zfr.2_Intron|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	26	CUB 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	ATCCTGTCCCCTAACTATCCT	0.473													17	83					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7170372	7170372	+	Splice_Site	SNP	G	A	A	rs112283405		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7170372G>A	uc001qsj.2	+	7	1110	c.391_splice	c.e7+1	p.D131_splice	C1S_uc001qsk.2_Splice_Site_p.D131_splice|C1S_uc001qsl.2_Splice_Site_p.D131_splice|C1S_uc009zfr.2_Splice_Site|C1S_uc009zfs.2_Splice_Site	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent						complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	GTTGCCACAGGTAAGGCTCAC	0.423													23	59					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7173259	7173259	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7173259C>T	uc001qsj.2	+	10	1575	c.856C>T	c.(856-858)CGC>TGC	p.R286C	C1S_uc001qsk.2_Missense_Mutation_p.R286C|C1S_uc001qsl.2_Missense_Mutation_p.R286C|C1S_uc009zfr.2_Missense_Mutation_p.R119C|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	286	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	CTGGAAACTTCGCTATCATGG	0.433													22	65					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7173261	7173261	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7173261C>T	uc001qsj.2	+	10	1577	c.858C>T	c.(856-858)CGC>CGT	p.R286R	C1S_uc001qsk.2_Silent_p.R286R|C1S_uc001qsl.2_Silent_p.R286R|C1S_uc009zfr.2_Silent_p.R119R|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	286	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	GGAAACTTCGCTATCATGGAG	0.433													6	78					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7175787	7175787	+	Missense_Mutation	SNP	G	A	A	rs142773314		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7175787G>A	uc001qsj.2	+	14	1942	c.1223G>A	c.(1222-1224)AGC>AAC	p.S408N	C1S_uc001qsk.2_Missense_Mutation_p.S408N|C1S_uc001qsl.2_Missense_Mutation_p.S408N|C1S_uc009zfr.2_Missense_Mutation_p.S241N|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	408	Sushi 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	GGTAACGGGAGCTGGGTGAAT	0.582													15	27					0	0	1	0	0
C1R	715	broad.mit.edu	37	12	7188077	7188077	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7188077C>T	uc010sfy.1	-	10	1936	c.1877G>A	c.(1876-1878)GGA>GAA	p.G626E		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	626	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCTATTCTTTCCCCGGAGCCA	0.542													12	26					0	0	1	0	0
C1R	715	broad.mit.edu	37	12	7188219	7188219	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7188219G>A	uc010sfy.1	-	10	1794	c.1735C>T	c.(1735-1737)CCT>TCT	p.P579S		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	579	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TCGTTGTCAGGGAGGCAGATG	0.552													18	31					0	0	1	0	0
C1R	715	broad.mit.edu	37	12	7188426	7188426	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7188426C>T	uc010sfy.1	-	10	1587	c.1528G>A	c.(1528-1530)GAA>AAA	p.E510K		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	510	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CTTTGCGCTTCGTGTTCCTTG	0.612													12	56					0	0	1	0	0
C1R	715	broad.mit.edu	37	12	7188460	7188460	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7188460G>A	uc010sfy.1	-	10	1553	c.1494C>T	c.(1492-1494)CTC>CTT	p.L498L		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	498	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGGCAGCTGTGAGGATCCAGC	0.607													5	39					0	0	1	0	0
C1R	715	broad.mit.edu	37	12	7242035	7242035	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7242035G>A	uc010sfy.1	-	5	681	c.622C>T	c.(622-624)CTG>TTG	p.L208L	C1R_uc010sfz.1_Silent_p.L222L|C1R_uc010sga.1_Silent_p.L174L	NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	208	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGGTACTCCAGGCTGGAGATG	0.632													23	15					0	0	1	0	0
C1R	715	broad.mit.edu	37	12	7242219	7242219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7242219C>T	uc010sfy.1	-	4	594	c.535G>A	c.(535-537)GGC>AGC	p.G179S	C1R_uc010sfz.1_Missense_Mutation_p.G193S|C1R_uc010sga.1_Missense_Mutation_p.G145S	NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	179	EGF-like; calcium-binding (Potential).				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AGCTCATAGCCTGGACGGCAG	0.602													23	93					0	0	1	0	0
C1R	715	broad.mit.edu	37	12	7242285	7242285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7242285G>A	uc010sfy.1	-	4	528	c.469C>T	c.(469-471)CCC>TCC	p.P157S	C1R_uc010sfz.1_Missense_Mutation_p.P171S|C1R_uc010sga.1_Missense_Mutation_p.P123S	NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	157	EGF-like; calcium-binding (Potential).				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TGGGGCTGGGGATCCTCCTCC	0.562													23	40					0	0	1	0	0
C1RL	51279	broad.mit.edu	37	12	7249425	7249425	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7249425G>A	uc001qsn.2	-	6	1043	c.1026C>T	c.(1024-1026)CTC>CTT	p.L342L	C1RL_uc009zft.2_3'UTR	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	342	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						GCAGCTCCAGGAGGGCGATGT	0.602													22	42					0	0	1	0	0
C1RL	51279	broad.mit.edu	37	12	7254553	7254553	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7254553G>A	uc001qsn.2	-	3	448	c.431C>T	c.(430-432)TCC>TTC	p.S144F	C1RL_uc009zft.2_Missense_Mutation_p.S144F|C1RL_uc001qso.1_Missense_Mutation_p.S144F	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	144	CUB.				complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						GTTCTCCGAGGAAGGCTGTGT	0.622													37	108					0	0	1	0	0
C1RL	51279	broad.mit.edu	37	12	7254675	7254675	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7254675G>A	uc001qsn.2	-	3	326	c.309C>T	c.(307-309)TTC>TTT	p.F103F	C1RL_uc009zft.2_Silent_p.F103F|C1RL_uc001qso.1_Silent_p.F103F	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	103	CUB.				complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						CCGAACCGACGAATGAGATCT	0.607													53	111					0	0	1	0	0
C1RL	51279	broad.mit.edu	37	12	7260984	7260984	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7260984G>A	uc001qsn.2	-	2	180	c.163C>T	c.(163-165)CCC>TCC	p.P55S	C1RL_uc009zft.2_Missense_Mutation_p.P55S|C1RL_uc001qso.1_Missense_Mutation_p.P55S|LOC283314_uc001qsp.2_RNA|LOC283314_uc010sgb.1_5'Flank	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	55	CUB.				complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						GGGTACCCGGGGGATGTCAGC	0.622													22	50					0	0	1	0	0
RBP5	83758	broad.mit.edu	37	12	7280952	7280952	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7280952G>A	uc001qsq.2	-	2	231	c.136C>T	c.(136-138)CAG>TAG	p.Q46*	CLSTN3_uc001qsr.2_5'Flank	NM_031491	NP_113679	P82980	RET5_HUMAN	retinol binding protein 5, cellular	46						cytoplasm	retinal binding|retinol binding|transporter activity			ovary(1)	1					Vitamin A(DB00162)	TGGTTGCCCTGGTGTTCGATC	0.582													10	71					0	0	1	0	0
RBP5	83758	broad.mit.edu	37	12	7280989	7280989	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7280989G>A	uc001qsq.2	-	2	194	c.99C>T	c.(97-99)ATC>ATT	p.I33I	CLSTN3_uc001qsr.2_5'Flank	NM_031491	NP_113679	P82980	RET5_HUMAN	retinol binding protein 5, cellular	33						cytoplasm	retinal binding|retinol binding|transporter activity			ovary(1)	1					Vitamin A(DB00162)	GCAGCAGCGCGATCTTCCGCA	0.607													14	54					0	0	1	0	0
CLSTN3	9746	broad.mit.edu	37	12	7287995	7287996	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7287995_7287996GG>AA	uc001qsr.2	+	4	734_735	c.456_457GG>AA	c.(454-459)GCGGCT>GCAACT	p.A153T	CLSTN3_uc001qss.2_Missense_Mutation_p.A165T	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	153	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						TGTATCGTGCGGCTGTGACAGA	0.564													25	56					0	0	1	0	0
CLSTN3	9746	broad.mit.edu	37	12	7289621	7289621	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7289621C>T	uc001qsr.2	+	7	1403	c.1125C>T	c.(1123-1125)ACC>ACT	p.T375T	CLSTN3_uc001qss.2_Silent_p.T387T	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	375	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						ACCACTTCACCCTGTCCTTCT	0.587													28	47					0	0	1	0	0
CLSTN3	9746	broad.mit.edu	37	12	7295530	7295530	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7295530C>T	uc001qsr.2	+	11	1884	c.1606C>T	c.(1606-1608)CGC>TGC	p.R536C	CLSTN3_uc001qss.2_Missense_Mutation_p.R548C	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	536	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						GCGCTCAGGTCGCCTGGAGAG	0.567													17	45					0	0	1	0	0
CLSTN3	9746	broad.mit.edu	37	12	7310146	7310146	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7310146C>T	uc001qsr.2	+	17	2867	c.2589C>T	c.(2587-2589)GTC>GTT	p.V863V	CLSTN3_uc001qss.2_Silent_p.V875V|CLSTN3_uc001qst.2_Silent_p.V271V	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	863	Helical; (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						TGCTCATGGTCGTCCTGGGCC	0.662													11	26					0	0	1	0	0
CLSTN3	9746	broad.mit.edu	37	12	7310207	7310207	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7310207C>T	uc001qsr.2	+	17	2928	c.2650C>T	c.(2650-2652)CCA>TCA	p.P884S	CLSTN3_uc001qss.2_Missense_Mutation_p.P896S|CLSTN3_uc001qst.2_Missense_Mutation_p.P292S	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	884	Cytoplasmic (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						CGGCGGGCCTCCAGGGGCCTC	0.642													9	17					0	0	1	0	0
ACSM4	341392	broad.mit.edu	37	12	7457122	7457122	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7457122G>A	uc001qsx.1	+	1	195	c.195G>A	c.(193-195)AAG>AAA	p.K65K		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	65					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GGTCCCAAAAGGAGAAGGTAT	0.453													8	55					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7510075	7510075	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7510075G>A	uc001qsy.2	-	19	4313	c.4287C>T	c.(4285-4287)ACC>ACT	p.T1429T	CD163L1_uc010sge.1_Silent_p.T1439T	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1429	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CATGGTTGGGGGTGTCATCTG	0.463													4	50					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7526061	7526061	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7526061G>A	uc001qsy.2	-	14	3611	c.3585C>T	c.(3583-3585)GCC>GCT	p.A1195A	CD163L1_uc010sge.1_Silent_p.A1205A	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1195	SRCR 11.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TAGATAAAGGGGCGAGGCTGA	0.567													16	133					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7527128	7527128	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7527128C>T	uc001qsy.2	-	13	3345	c.3319G>A	c.(3319-3321)GGA>AGA	p.G1107R	CD163L1_uc010sge.1_Missense_Mutation_p.G1117R	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1107	SRCR 10.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						GACTCCATTCCTGTGCAGTTC	0.622													34	71					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7528297	7528297	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7528297G>A	uc001qsy.2	-	10	2711	c.2685C>T	c.(2683-2685)TCC>TCT	p.S895S	CD163L1_uc010sge.1_Silent_p.S905S	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	895	SRCR 8.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AAATCTCACGGGAACAGACAA	0.463													22	67					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7531715	7531715	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7531715G>A	uc001qsy.2	-	9	2256	c.2230C>T	c.(2230-2232)CAT>TAT	p.H744Y	CD163L1_uc010sge.1_Missense_Mutation_p.H754Y	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	744	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TCTGTGAAATGAGGCTCTCTG	0.478													29	121					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7636110	7636110	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7636110C>T	uc001qsz.3	-	12	3069	c.2941G>A	c.(2941-2943)GAA>AAA	p.E981K	CD163_uc001qta.3_Missense_Mutation_p.E981K|CD163_uc009zfw.2_Missense_Mutation_p.E1014K	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	981	SRCR 9.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						AACTCTGCTTCTTTGAATGCT	0.522													45	91					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7639174	7639174	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7639174G>A	uc001qsz.3	-	10	2507	c.2379C>T	c.(2377-2379)TCC>TCT	p.S793S	CD163_uc001qta.3_Silent_p.S793S|CD163_uc009zfw.2_Silent_p.S826S	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	793	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GCCAAATGCGGGATTCTTTTC	0.507													67	170					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7639261	7639261	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7639261C>T	uc001qsz.3	-	10	2420	c.2292G>A	c.(2290-2292)GAG>GAA	p.E764E	CD163_uc001qta.3_Silent_p.E764E|CD163_uc009zfw.2_Silent_p.E797E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	764	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CATTAATGGCCTCTCCACAGC	0.532													60	186					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7639996	7639996	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7639996G>A	uc001qsz.3	-	8	2137	c.2009C>T	c.(2008-2010)TCA>TTA	p.S670L	CD163_uc001qta.3_Missense_Mutation_p.S670L|CD163_uc009zfw.2_Missense_Mutation_p.S703L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	670	SRCR 6.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						AGGACATAATGAAGCACCTAG	0.483													25	45					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7649458	7649458	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7649458C>T	uc001qsz.3	-	5	1178	c.1050G>A	c.(1048-1050)TGG>TGA	p.W350*	CD163_uc001qta.3_Nonsense_Mutation_p.W350*|CD163_uc009zfw.2_Nonsense_Mutation_p.W350*	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	350	SRCR 3.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						AATGCTTTCCCCATTCATGGT	0.368													15	57					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7651534	7651534	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7651534C>T	uc001qsz.3	-	4	836	c.708G>A	c.(706-708)TGG>TGA	p.W236*	CD163_uc001qta.3_Nonsense_Mutation_p.W236*|CD163_uc009zfw.2_Nonsense_Mutation_p.W236*	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	236	SRCR 2.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GTTTGCAGTTCCAGAGAGCTG	0.433													55	172					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7655151	7655151	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7655151C>T	uc001qsz.3	-	2	184	c.56G>A	c.(55-57)AGA>AAA	p.R19K	CD163_uc001qta.3_Missense_Mutation_p.R19K|CD163_uc009zfw.2_Missense_Mutation_p.R19K	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	19					acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						gacaaaatgtcttctgaagtc	0.209													3	9					0	0	1	0	0
APOBEC1	339	broad.mit.edu	37	12	7805044	7805044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7805044C>T	uc001qtb.2	-	3	466	c.432G>A	c.(430-432)ATG>ATA	p.M144I	APOBEC1_uc001qtc.2_Missense_Mutation_p.M99I|APOBEC1_uc010sgf.1_Missense_Mutation_p.M144I	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	144					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						CTGATGCTCTCATAATCTGAA	0.418													12	54					0	0	1	0	0
GDF3	9573	broad.mit.edu	37	12	7848085	7848085	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7848085C>T	uc001qte.2	-	1	276	c.240G>A	c.(238-240)GGG>GGA	p.G80G		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	80					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity	p.G80E(1)		skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						GAAGTACATTCCCGCGGACGC	0.488													36	65					0	0	1	0	0
DPPA3	359787	broad.mit.edu	37	12	7864234	7864234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7864234C>T	uc001qtf.2	+	1	146	c.68C>T	c.(67-69)TCC>TTC	p.S23F		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	23						cytoplasm|nucleus					0				Kidney(36;0.0887)		GAAGAAAATTCCCGGGACGAT	0.468													19	32					0	0	1	0	0
DPPA3	359787	broad.mit.edu	37	12	7867834	7867834	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7867834C>T	uc001qtf.2	+	2	216	c.138C>T	c.(136-138)ATC>ATT	p.I46I		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	46						cytoplasm|nucleus					0				Kidney(36;0.0887)		ACTTGACTATCAACGCTAGTA	0.458													14	102					0	0	1	0	0
NANOG	79923	broad.mit.edu	37	12	7945794	7945794	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7945794C>T	uc009zfy.1	+	2	616	c.400C>T	c.(400-402)CTC>TTC	p.L134F		NM_024865	NP_079141	Q9H9S0	NANOG_HUMAN	Nanog homeobox	134	Homeobox.				cell proliferation|embryo development|somatic stem cell maintenance	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				Kidney(36;0.0872)		CATCCTGAACCTCAGCTACAA	0.438													4	42					0	0	1	0	0
SLC2A14	144195	broad.mit.edu	37	12	7966949	7966949	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:7966949C>T	uc001qtk.2	-	16	2319	c.1526G>A	c.(1525-1527)AGC>AAC	p.S509N	SLC2A14_uc001qtl.2_Missense_Mutation_p.S486N|SLC2A14_uc001qtm.2_Missense_Mutation_p.S486N|SLC2A14_uc010sgg.1_Missense_Mutation_p.S400N|SLC2A14_uc001qtn.2_Missense_Mutation_p.S509N|SLC2A14_uc001qto.2_Missense_Mutation_p.S144N|SLC2A14_uc010sgh.1_Missense_Mutation_p.S524N	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	509	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		AGGCTCGATGCTGTTCATCCC	0.577													31	276					0	0	1	0	0
FOXJ2	55810	broad.mit.edu	37	12	8196618	8196618	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8196618C>T	uc001qtu.2	+	5	1634	c.549C>T	c.(547-549)GCC>GCT	p.A183A	FOXJ2_uc001qtt.1_Silent_p.A183A	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	183					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		GTGGAGAAGCCTCACTGCCTC	0.547													31	88					0	0	1	0	0
NECAP1	25977	broad.mit.edu	37	12	8234961	8234962	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8234961_8234962CC>TT	uc001qtx.2	+	1	155_156	c.77_78CC>TT	c.(76-78)GCC>GTT	p.A26V	uc001qtw.1_5'Flank|NECAP1_uc001qty.2_5'UTR	NM_015509	NP_056324	Q8NC96	NECP1_HUMAN	NECAP endocytosis associated 1	26					endocytosis|protein transport	clathrin coated vesicle membrane|plasma membrane				ovary(1)	1				Kidney(36;0.0915)		CCGCCCCGGGCCTCCAACCGCG	0.634													5	23					0	0	1	0	0
NECAP1	25977	broad.mit.edu	37	12	8245339	8245339	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8245339C>T	uc001qtx.2	+	5	529	c.451C>T	c.(451-453)CTG>TTG	p.L151L	NECAP1_uc001qty.2_Silent_p.L9L	NM_015509	NP_056324	Q8NC96	NECP1_HUMAN	NECAP endocytosis associated 1	151					endocytosis|protein transport	clathrin coated vesicle membrane|plasma membrane				ovary(1)	1				Kidney(36;0.0915)		TAAGTTGGATCTGGGCTTCAA	0.388													16	34					0	0	1	0	0
FAM90A1	55138	broad.mit.edu	37	12	8374541	8374541	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8374541G>A	uc001qui.2	-	7	1831	c.1272C>T	c.(1270-1272)CTC>CTT	p.L424L	FAM90A1_uc001quh.2_Silent_p.L424L	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	424							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		GGCTCTGAGCGAGGAAGGCTC	0.592													10	41					0	0	1	0	0
FAM90A1	55138	broad.mit.edu	37	12	8374623	8374623	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8374623C>T	uc001qui.2	-	7	1749	c.1190G>A	c.(1189-1191)CGG>CAG	p.R397Q	FAM90A1_uc001quh.2_Missense_Mutation_p.R397Q	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	397							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TTCCAGTCTCCGAAAGAGCAC	0.637													7	31					0	0	1	0	0
FAM90A1	55138	broad.mit.edu	37	12	8375235	8375235	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8375235G>A	uc001qui.2	-	7	1137	c.578C>T	c.(577-579)TCC>TTC	p.S193F	FAM90A1_uc001quh.2_Missense_Mutation_p.S193F	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	193							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		ACTTGAGGAGGAGCTCAGACT	0.597													23	90					0	0	1	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376633	8376633	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8376633C>T	uc001qui.2	-	5	861	c.302G>A	c.(301-303)GGA>GAA	p.G101E	FAM90A1_uc001quh.2_Missense_Mutation_p.G101E	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	101							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TTCCTTCTCTCCCTTATCCTT	0.537													58	143					0	0	1	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376712	8376712	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8376712C>T	uc001qui.2	-	5	782	c.223G>A	c.(223-225)GAA>AAA	p.E75K	FAM90A1_uc001quh.2_Missense_Mutation_p.E75K	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	75							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		CCTTCCTTTTCCCCAAAGTTC	0.547													27	138					0	0	1	0	0
LOC653113	653113	broad.mit.edu	37	12	8384153	8384153	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8384153G>A	uc010sgk.1	-	5		c.1635C>T				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						TTGGGTCGGGGACCTGGGGTC	0.557													3	8					0	0	1	0	0
LOC653113	653113	broad.mit.edu	37	12	8386984	8386984	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8386984G>A	uc010sgk.1	-	4		c.472C>T				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						GCAGGACCCCGACCAGCGACA	0.587													12	65					0	0	1	0	0
CLEC6A	93978	broad.mit.edu	37	12	8610502	8610502	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8610502G>A	uc001qum.1	+	2	157	c.40G>A	c.(40-42)GGC>AGC	p.G14S		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	14	Cytoplasmic (Potential).				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					AGAGAAAAGAGGCTGGTTGTC	0.483													16	51					0	0	1	0	0
CLEC6A	93978	broad.mit.edu	37	12	8610536	8610536	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8610536G>A	uc001qum.1	+	2	191	c.74G>A	c.(73-75)GGG>GAG	p.G25E		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	25	Helical; Signal-anchor for type II membrane protein; (Potential).				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					TCTGTGGCTGGGATTTCCATT	0.493													24	51					0	0	1	0	0
CLEC6A	93978	broad.mit.edu	37	12	8612237	8612237	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8612237G>A	uc001qum.1	+	3	283	c.166G>A	c.(166-168)GAA>AAA	p.E56K		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	56	Extracellular (Potential).				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					AAGGCTGTCTGAACTACACTC	0.363													20	148					0	0	1	0	0
CLEC4D	338339	broad.mit.edu	37	12	8673861	8673861	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8673861G>A	uc001qun.2	+	6	835	c.642G>A	c.(640-642)TTG>TTA	p.L214L		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D	214	Extracellular (Potential).				innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)					GAACAACATTGAACTAGAAAC	0.363													28	50					0	0	1	0	0
CLEC4E	26253	broad.mit.edu	37	12	8687402	8687402	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8687402G>A	uc001quo.1	-	6	657	c.492C>T	c.(490-492)TTC>TTT	p.F164F		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	164	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					CTACATCCCAGAAGCTGAAAA	0.353													20	53					0	0	1	0	0
CLEC4E	26253	broad.mit.edu	37	12	8692525	8692525	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8692525G>A	uc001quo.1	-	2	221	c.56C>T	c.(55-57)TCC>TTC	p.S19F		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	19	Cytoplasmic (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					GAACATTTGGGAAGAGAAGCA	0.403													38	144					0	0	1	0	0
CLEC4E	26253	broad.mit.edu	37	12	8692540	8692540	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8692540C>T	uc001quo.1	-	2	206	c.41G>A	c.(40-42)AGA>AAA	p.R14K		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	14	Cytoplasmic (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					GAAGCATCCTCTCTCTGTAGA	0.408													29	119					0	0	1	0	0
AICDA	57379	broad.mit.edu	37	12	8757435	8757435	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8757435G>A	uc001qur.2	-	4	590	c.511C>T	c.(511-513)CGT>TGT	p.R171C	AICDA_uc001qup.1_Missense_Mutation_p.R156C|AICDA_uc001quq.1_Intron|AICDA_uc009zgd.1_Intron	NM_020661	NP_065712	Q9GZX7	AICDA_HUMAN	activation-induced cytidine deaminase	171					B cell differentiation|DNA demethylation|mRNA processing|negative regulation of methylation-dependent chromatin silencing	cytoplasm	cytidine deaminase activity|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung SC(5;0.184)					CTGGAGAGACGAACTGAATTT	0.368									Immune_Deficiency_with_Hyper-IgM				36	160					0	0	1	0	0
AICDA	57379	broad.mit.edu	37	12	8757480	8757480	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8757480C>T	uc001qur.2	-	4	545	c.466G>A	c.(466-468)GAA>AAA	p.E156K	AICDA_uc001qup.1_Missense_Mutation_p.E141K|AICDA_uc001quq.1_Intron|AICDA_uc009zgd.1_Intron	NM_020661	NP_065712	Q9GZX7	AICDA_HUMAN	activation-induced cytidine deaminase	156					B cell differentiation|DNA demethylation|mRNA processing|negative regulation of methylation-dependent chromatin silencing	cytoplasm	cytidine deaminase activity|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung SC(5;0.184)					AAAGTTCTTTCGTGGTTTTCT	0.423									Immune_Deficiency_with_Hyper-IgM				45	92					0	0	1	0	0
AICDA	57379	broad.mit.edu	37	12	8757986	8757986	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8757986C>T	uc001qur.2	-	3	331	c.252G>A	c.(250-252)TGG>TGA	p.W84*	AICDA_uc001qup.1_Nonsense_Mutation_p.W79*|AICDA_uc001quq.1_Nonsense_Mutation_p.W79*|AICDA_uc009zgd.1_Intron	NM_020661	NP_065712	Q9GZX7	AICDA_HUMAN	activation-induced cytidine deaminase	84					B cell differentiation|DNA demethylation|mRNA processing|negative regulation of methylation-dependent chromatin silencing	cytoplasm	cytidine deaminase activity|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung SC(5;0.184)					AGCAGGGGCTCCAGGAGGTGA	0.617									Immune_Deficiency_with_Hyper-IgM				22	51					0	0	1	0	0
AICDA	57379	broad.mit.edu	37	12	8758078	8758078	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8758078C>T	uc001qur.2	-	3	239	c.160G>A	c.(160-162)GGC>AGC	p.G54S	AICDA_uc001qup.1_Missense_Mutation_p.G49S|AICDA_uc001quq.1_Missense_Mutation_p.G49S|AICDA_uc009zgd.1_Intron	NM_020661	NP_065712	Q9GZX7	AICDA_HUMAN	activation-induced cytidine deaminase	54					B cell differentiation|DNA demethylation|mRNA processing|negative regulation of methylation-dependent chromatin silencing	cytoplasm	cytidine deaminase activity|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung SC(5;0.184)					ACGTGGCAGCCGTTCTGGAGA	0.557									Immune_Deficiency_with_Hyper-IgM				15	47					0	0	1	0	0
MFAP5	8076	broad.mit.edu	37	12	8800731	8800731	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8800731G>A	uc001qut.1	-	10	691	c.478C>T	c.(478-480)CCT>TCT	p.P160S	MFAP5_uc001qus.2_Missense_Mutation_p.P150S|MFAP5_uc009zge.1_Missense_Mutation_p.P135S	NM_003480	NP_003471	Q13361	MFAP5_HUMAN	microfibrillar associated protein 5 precursor	160						microfibril	extracellular matrix structural constituent			breast(1)	1	Lung SC(5;0.184)					TCACAGGGAGGAAGTCGGAAG	0.478													14	56					0	0	1	0	0
MFAP5	8076	broad.mit.edu	37	12	8802109	8802109	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8802109C>T	uc001qut.1	-	9	610	c.397G>A	c.(397-399)GAA>AAA	p.E133K	MFAP5_uc001qus.2_Missense_Mutation_p.E123K|MFAP5_uc009zge.1_Missense_Mutation_p.E108K	NM_003480	NP_003471	Q13361	MFAP5_HUMAN	microfibrillar associated protein 5 precursor	133						microfibril	extracellular matrix structural constituent			breast(1)	1	Lung SC(5;0.184)					TTCATAGCTTCGTGTTCCTTA	0.403													19	42					0	0	1	0	0
MFAP5	8076	broad.mit.edu	37	12	8814653	8814653	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:8814653G>A	uc001qut.1	-	2	261	c.48C>T	c.(46-48)ATC>ATT	p.I16I	MFAP5_uc001qus.2_Silent_p.I16I|MFAP5_uc009zge.1_Silent_p.I16I	NM_003480	NP_003471	Q13361	MFAP5_HUMAN	microfibrillar associated protein 5 precursor	16						microfibril	extracellular matrix structural constituent			breast(1)	1	Lung SC(5;0.184)					CAGAGGTGATGATGAATGCAG	0.512													10	23					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	9001395	9001395	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9001395C>T	uc001quz.3	+	16	2011	c.1913C>T	c.(1912-1914)CCA>CTA	p.P638L	A2ML1_uc001qva.1_Missense_Mutation_p.P218L|A2ML1_uc010sgm.1_Missense_Mutation_p.P138L	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	482						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GTGTCTGGCCCATGGGACTTT	0.552													42	226					0	0	1	0	0
KLRG1	10219	broad.mit.edu	37	12	9144893	9144893	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9144893G>A	uc001qvh.2	+	2	185	c.174G>A	c.(172-174)TGG>TGA	p.W58*	KLRG1_uc001qvg.2_Nonsense_Mutation_p.W58*	NM_005810	NP_005801	Q96E93	KLRG1_HUMAN	killer cell lectin-like receptor subfamily G,	58	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway|cellular defense response|inflammatory response|regulation of immune response	integral to membrane	receptor activity|sugar binding			central_nervous_system(1)	1						TATACCAGTGGATCCTGTGCC	0.388													78	170					0	0	1	0	0
KLRG1	10219	broad.mit.edu	37	12	9161639	9161639	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9161639G>A	uc001qvh.2	+	4	437	c.426G>A	c.(424-426)AGG>AGA	p.R142R	KLRG1_uc001qvg.2_Silent_p.R142R	NM_005810	NP_005801	Q96E93	KLRG1_HUMAN	killer cell lectin-like receptor subfamily G,	142	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway|cellular defense response|inflammatory response|regulation of immune response	integral to membrane	receptor activity|sugar binding			central_nervous_system(1)	1						CTGGCTGGAGGTGGGAAGATG	0.353													9	63					0	0	1	0	0
A2M	2	broad.mit.edu	37	12	9225293	9225293	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9225293C>T	uc001qvk.1	-	30	4044	c.3931G>A	c.(3931-3933)GAA>AAA	p.E1311K	A2M_uc001qvj.1_Missense_Mutation_p.E353K|A2M_uc009zgk.1_Missense_Mutation_p.E1161K	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	1311					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	ATGCTGTATTCCCCAGGCAGC	0.517													62	121					0	0	1	0	0
A2M	2	broad.mit.edu	37	12	9258912	9258912	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9258912C>T	uc001qvk.1	-	10	1137	c.1024G>A	c.(1024-1026)GAA>AAA	p.E342K	A2M_uc009zgk.1_Missense_Mutation_p.E192K	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	342					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	CTTGTGATTTCACTGGACTGC	0.408													41	66					0	0	1	0	0
A2M	2	broad.mit.edu	37	12	9264799	9264799	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9264799G>A	uc001qvk.1	-	4	552	c.439C>T	c.(439-441)CGT>TGT	p.R147C	A2M_uc009zgk.1_5'UTR	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	147					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	GAGACAACACGAAATTTCACT	0.393													10	49					0	0	1	0	0
PZP	5858	broad.mit.edu	37	12	9307218	9307218	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9307218G>A	uc001qvl.2	-	29	3797	c.3768C>T	c.(3766-3768)TCC>TCT	p.S1256S	PZP_uc009zgl.2_Silent_p.S1042S	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TGACCTGGGTGGAGGAGAAAC	0.512													9	19					0	0	1	0	0
PZP	5858	broad.mit.edu	37	12	9321515	9321515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9321515G>A	uc001qvl.2	-	17	2086	c.2057C>T	c.(2056-2058)TCA>TTA	p.S686L	PZP_uc009zgl.2_Missense_Mutation_p.S555L|PZP_uc010sgo.1_5'Flank|PZP_uc009zgm.1_Missense_Mutation_p.S18L	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						AGGGATGACTGAACACGACTT	0.368													36	86					0	0	1	0	0
PZP	5858	broad.mit.edu	37	12	9333638	9333638	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9333638G>A	uc001qvl.2	-	15	1809	c.1780C>T	c.(1780-1782)CGT>TGT	p.R594C	PZP_uc009zgl.2_Missense_Mutation_p.R463C	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TCCACAGCACGAAGGGCACAG	0.587													12	35					0	0	1	0	0
PZP	5858	broad.mit.edu	37	12	9333729	9333729	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9333729C>T	uc001qvl.2	-	15	1719	c.1690_splice	c.e15-1	p.V564_splice	PZP_uc009zgl.2_Splice_Site_p.V433_splice	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TCAAATCCACCTGTGGGAAAT	0.522													6	38					0	0	1	0	0
CD69	969	broad.mit.edu	37	12	9907256	9907256	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:9907256C>T	uc001qwk.2	-	4	499	c.418G>A	c.(418-420)GAA>AAA	p.E140K	CD69_uc010sgu.1_Missense_Mutation_p.E140K|CD69_uc010sgv.1_3'UTR	NM_001781	NP_001772	Q07108	CD69_HUMAN	CD69 molecule	140	C-type lectin.|Extracellular (Potential).					integral to plasma membrane	sugar binding|transmembrane receptor activity				0						ACCCAGTGTTCCTCTCTACCT	0.393													83	186					0	0	1	0	0
CLEC2B	9976	broad.mit.edu	37	12	10010183	10010183	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10010183G>A	uc001qwn.2	-	3	784	c.127C>T	c.(127-129)CAA>TAA	p.Q43*		NM_005127	NP_005118	Q92478	CLC2B_HUMAN	C-type lectin, superfamily member 2	43	C-type lectin.|Extracellular (Potential).					integral to plasma membrane	sugar binding				0						CATTTGTTTTGGAAACCAATC	0.318													9	34					0	0	1	0	0
CLEC1A	51267	broad.mit.edu	37	12	10241809	10241809	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10241809G>A	uc001qxb.2	-	2	212	c.128C>T	c.(127-129)CCC>CTC	p.P43L	CLEC1A_uc009zhf.2_5'UTR|CLEC1A_uc001qxc.2_5'UTR|CLEC1A_uc001qxd.2_Intron|CLEC1A_uc010sgx.1_Intron	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	43	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						CGTTGAAGAGGGAGCCCTGTG	0.527													8	40					0	0	1	0	0
CLEC7A	64581	broad.mit.edu	37	12	10275908	10275908	+	Missense_Mutation	SNP	G	A	A	rs140318683	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10275908G>A	uc001qxg.2	-	5	734	c.547C>T	c.(547-549)CTT>TTT	p.L183F	CLEC7A_uc001qxe.3_RNA|CLEC7A_uc001qxf.2_Missense_Mutation_p.L137F|CLEC7A_uc001qxh.2_Intron|CLEC7A_uc001qxi.2_Intron|CLEC7A_uc001qxj.2_Missense_Mutation_p.L104F|CLEC7A_uc009zhg.1_RNA|CLEC7A_uc001qxk.1_RNA|CLEC7A_uc001qxl.1_3'UTR	NM_197947	NP_922938	Q9BXN2	CLC7A_HUMAN	dendritic cell-associated C-type lectin 1	183	C-type lectin.|Extracellular (Potential).				carbohydrate mediated signaling|defense response to protozoan|inflammatory response|innate immune response|phagocytosis, recognition|T cell activation	cytoplasm|integral to membrane	metal ion binding|MHC protein binding|sugar binding			central_nervous_system(1)	1						GGCCGAGAAAGGCCTATCCAA	0.353													10	48					0	0	1	0	0
OLR1	4973	broad.mit.edu	37	12	10312586	10312586	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10312586G>A	uc001qxo.1	-	6	829	c.715C>T	c.(715-717)CCT>TCT	p.P239S	OLR1_uc010sgz.1_3'UTR|OLR1_uc010sha.1_3'UTR	NM_002543	NP_002534	P78380	OLR1_HUMAN	oxidized low density lipoprotein (lectin-like)	239	Extracellular (Potential).|C-type lectin.				blood circulation|blood coagulation|inflammatory response|leukocyte migration|proteolysis	extracellular region|integral to plasma membrane|membrane fraction	sugar binding			ovary(1)	1						GTACCTGAAGGGTATGTCTGG	0.428													35	135					0	0	1	0	0
KLRD1	3824	broad.mit.edu	37	12	10462072	10462072	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10462072G>A	uc001qxw.3	+	3	290	c.93G>A	c.(91-93)TTG>TTA	p.L31L	KLRD1_uc001qxx.3_Silent_p.L31L|KLRD1_uc001qxy.3_Intron|KLRD1_uc009zhh.2_Silent_p.L31L|KLRD1_uc009zhi.2_Silent_p.L31L|KLRD1_uc001qxz.3_Silent_p.L31L	NM_001114396	NP_001107868	Q13241	KLRD1_HUMAN	killer cell lectin-like receptor subfamily D,	31	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						GAATTTTGTTGAAAAATTGTA	0.328													21	39					0	0	1	0	0
KLRD1	3824	broad.mit.edu	37	12	10462275	10462275	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10462275G>A	uc001qxw.3	+	4	348	c.151G>A	c.(151-153)GAA>AAA	p.E51K	KLRD1_uc001qxx.3_Missense_Mutation_p.E51K|KLRD1_uc001qxy.3_Missense_Mutation_p.E20K|KLRD1_uc009zhh.2_Intron|KLRD1_uc009zhi.2_Missense_Mutation_p.E51K|KLRD1_uc001qxz.3_Missense_Mutation_p.E51K	NM_001114396	NP_001107868	Q13241	KLRD1_HUMAN	killer cell lectin-like receptor subfamily D,	51	Extracellular (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						ACCCAACATAGAACTCCAGAA	0.333													5	39					0	0	1	0	0
KLRD1	3824	broad.mit.edu	37	12	10464155	10464155	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10464155C>T	uc001qxw.3	+	5	453	c.256C>T	c.(256-258)CGG>TGG	p.R86W	KLRD1_uc001qxx.3_Missense_Mutation_p.R86W|KLRD1_uc001qxy.3_Missense_Mutation_p.R55W|KLRD1_uc009zhh.2_Missense_Mutation_p.R65W|KLRD1_uc009zhi.2_Missense_Mutation_p.R86W|KLRD1_uc001qxz.3_Missense_Mutation_p.R86W	NM_001114396	NP_001107868	Q13241	KLRD1_HUMAN	killer cell lectin-like receptor subfamily D,	86	Extracellular (Potential).|C-type lectin.				cell surface receptor linked signaling pathway|regulation of immune response	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						GAACGAAAGTCGGCATCTCTG	0.438													19	82					0	0	1	0	0
KLRK1	22914	broad.mit.edu	37	12	10531183	10531183	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10531183G>A	uc009zhj.2	-	6	563	c.399C>T	c.(397-399)AGC>AGT	p.S133S	uc001qya.1_Intron|KLRK1_uc001qyb.2_RNA|KLRK1_uc001qyc.2_Silent_p.S133S|KLRK1_uc009zhk.2_Silent_p.S133S|KLRK1_uc001qyd.2_Silent_p.S133S	NM_007360	NP_031386	P26718	NKG2D_HUMAN	NKG2-D type II integral membrane protein	133	Extracellular (Potential).|C-type lectin.				natural killer cell activation|T cell costimulation	integral to plasma membrane	sugar binding				0						CTTTCAGAAGGCTGGCATTTT	0.353													39	61					0	0	1	0	0
KLRC4	8302	broad.mit.edu	37	12	10560269	10560269	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10560269G>A	uc001qye.2	-	4	642	c.460C>T	c.(460-462)CTG>TTG	p.L154L	KLRK1_uc001qyc.2_5'UTR|KLRK1_uc009zhk.2_5'UTR|KLRK1_uc001qyd.2_5'UTR	NM_013431	NP_038459	O43908	NKG2F_HUMAN	killer cell lectin-like receptor subfamily C,	154	Extracellular (Potential).				cellular defense response	integral to membrane	binding|receptor activity				0						AAGCAGATCAGAGTTCTTCGA	0.308													30	267					0	0	1	0	0
KLRC4	8302	broad.mit.edu	37	12	10560278	10560278	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10560278G>A	uc001qye.2	-	4	633	c.451C>T	c.(451-453)CGA>TGA	p.R151*	KLRK1_uc001qyc.2_5'UTR|KLRK1_uc009zhk.2_5'UTR|KLRK1_uc001qyd.2_5'UTR	NM_013431	NP_038459	O43908	NKG2F_HUMAN	killer cell lectin-like receptor subfamily C,	151	Extracellular (Potential).				cellular defense response	integral to membrane	binding|receptor activity				0						AGAGTTCTTCGAAGCACAGGC	0.333													92	215					0	0	1	0	0
KLRC3	3823	broad.mit.edu	37	12	10569274	10569274	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10569274G>A	uc001qyf.2	-	5	624	c.579C>T	c.(577-579)TTC>TTT	p.F193F	KLRC3_uc001qyh.2_Silent_p.F193F|KLRC3_uc001qyi.1_Silent_p.F193F	NM_002261	NP_002252	Q07444	NKG2E_HUMAN	killer cell lectin-like receptor subfamily C,	193	C-type lectin.|Extracellular (Potential).				cellular defense response	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|skin(1)	3						ACTCATGTTTGAAAGCCAAAC	0.318													16	77					0	0	1	0	0
KLRC2	3822	broad.mit.edu	37	12	10584713	10584713	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10584713G>A	uc001qyk.2	-	5	583	c.576C>T	c.(574-576)TTC>TTT	p.F192F	KLRC3_uc001qyh.2_Intron|KLRC2_uc010she.1_Silent_p.F192F	NM_002260	NP_002251	P26717	NKG2C_HUMAN	killer cell lectin-like receptor subfamily C,	192	Extracellular (Potential).|C-type lectin.				cellular defense response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0						ACTTATGTTTGAAAGCCAAAC	0.313													7	36					0	0	1	0	0
KLRC1	3821	broad.mit.edu	37	12	10603085	10603085	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10603085G>A	uc001qyl.2	-	3	445	c.281C>T	c.(280-282)CCC>CTC	p.P94L	KLRC1_uc009zhm.1_Missense_Mutation_p.P94L|KLRC1_uc001qym.2_Missense_Mutation_p.P94L|KLRC1_uc001qyn.2_Missense_Mutation_p.P94L|KLRC1_uc001qyo.2_Missense_Mutation_p.P94L	NM_002259	NP_002250	P26715	NKG2A_HUMAN	killer cell lectin-like receptor subfamily C,	94	Extracellular (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0						AGACTTACAGGGAATAACAAC	0.383													25	100					0	0	1	0	0
CSDA	8531	broad.mit.edu	37	12	10856655	10856655	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10856655G>A	uc001qyt.2	-	7	1116	c.873C>T	c.(871-873)TAC>TAT	p.Y291Y	CSDA_uc001qyu.2_Silent_p.Y222Y	NM_003651	NP_003642	P16989	DBPA_HUMAN	cold shock domain protein A isoform a	291					negative regulation of transcription from RNA polymerase II promoter|response to cold	cytoplasm|nucleus	double-stranded DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|lung(1)|large_intestine(1)	4	Glioma(1;0.155)					CATACCTACGGTACCTTGGGC	0.478													11	73					0	0	1	0	0
TAS2R7	50837	broad.mit.edu	37	12	10954432	10954432	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10954432G>A	uc001qyv.2	-	1	795	c.738C>T	c.(736-738)GCC>GCT	p.A246A		NM_023919	NP_076408	Q9NYW3	TA2R7_HUMAN	taste receptor, type 2, member 7	246	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						ACAAATAGTAGGCAATAAAGA	0.493													14	56					0	0	1	0	0
TAS2R8	50836	broad.mit.edu	37	12	10958981	10958981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10958981G>A	uc010shh.1	-	1	599	c.599C>T	c.(598-600)TCA>TTA	p.S200L		NM_023918	NP_076407	Q9NYW2	TA2R8_HUMAN	taste receptor, type 2, member 8	200	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			ovary(2)	2						AAGGAAAAATGATATCAGTGA	0.378													42	66					0	0	1	0	0
TAS2R9	50835	broad.mit.edu	37	12	10962038	10962038	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10962038G>A	uc001qyx.2	-	1	730	c.637C>T	c.(637-639)CGA>TGA	p.R213*	TAS2R8_uc010shh.1_5'Flank	NM_023917	NP_076406	Q9NYW1	TA2R9_HUMAN	taste receptor, type 2, member 9	213	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						GCATGCAGTCGAATCTGCTTG	0.488													19	51					0	0	1	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978303	10978303	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10978303G>A	uc001qyy.1	-	1	566	c.566C>T	c.(565-567)TCC>TTC	p.S189F		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	189	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						TGTAATTAGGGATAGTGTAAA	0.358													32	64					0	0	1	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978476	10978476	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10978476G>A	uc001qyy.1	-	1	393	c.393C>T	c.(391-393)TTC>TTT	p.F131F		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	131	Helical; Name=4; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						ATACTATCATGAAGGGAAGAA	0.348													22	45					0	0	1	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978659	10978659	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:10978659G>A	uc001qyy.1	-	1	210	c.210C>T	c.(208-210)TTC>TTT	p.F70F		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	70	Extracellular (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						TATTTGGAGAGAATATCTGTA	0.333													18	44					0	0	1	0	0
PRH2	5555	broad.mit.edu	37	12	11083393	11083393	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11083393G>A	uc009zhr.2	+	3	271	c.233G>A	c.(232-234)GGC>GAC	p.G78D	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH2_uc001qzh.2_Missense_Mutation_p.G78D|PRH2_uc001qzi.3_Missense_Mutation_p.G78D	NM_001110213	NP_001103683	P02810	PRPC_HUMAN	proline-rich protein HaeIII subfamily 2	78						extracellular space	protein binding				0						CAACAAGGAGGCCAGCAGCAA	0.607													24	79					0	0	1	0	0
TAS2R14	50840	broad.mit.edu	37	12	11091012	11091013	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11091012_11091013GG>AA	uc010shi.1	-	1	794_795	c.794_795CC>TT	c.(793-795)TCC>TTT	p.S265F	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_RNA	NM_023922	NP_076411	Q9NYV8	T2R14_HUMAN	taste receptor, type 2, member 14	265	Helical; Name=7; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste		bitter taste receptor activity				0						CCATCACCTGGGAAAGAATAAT	0.421													11	124					0	0	1	0	0
TAS2R20	259295	broad.mit.edu	37	12	11150314	11150314	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11150314G>A	uc001qzm.2	-	1	161	c.161C>T	c.(160-162)TCC>TTC	p.S54F	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176889	NP_795370	P59543	T2R20_HUMAN	taste receptor, type 2, member 20	54	Helical; Name=2; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity				0						ACCAACTCTGGAGACTGCCAG	0.348													34	68					0	0	1	0	0
TAS2R42	353164	broad.mit.edu	37	12	11338854	11338854	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11338854C>T	uc001qzr.1	-	1	690	c.690G>A	c.(688-690)AGG>AGA	p.R230R	PRB4_uc001qzf.1_Intron	NM_181429	NP_852094	Q7RTR8	T2R42_HUMAN	taste receptor, type 2, member 42	230	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0455)			TCATGGCCCTCCTATGGGCCT	0.408													23	98					0	0	1	0	0
PRB3	5544	broad.mit.edu	37	12	11420567	11420567	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11420567C>T	uc001qzs.2	-	3	654	c.616G>A	c.(616-618)GGA>AGA	p.G206R	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	206	10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|8.|Pro-rich.		Missing (in allele S).			extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			GGGGGTGGTCCTTCTGGCTTT	0.632													30	400					0	0	1	0	0
PRB3	5544	broad.mit.edu	37	12	11420578	11420578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11420578C>T	uc001qzs.2	-	3	643	c.605G>A	c.(604-606)GGA>GAA	p.G202E	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	202	10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|8.|Pro-rich.		Missing (in allele S).			extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			TTCTGGCTTTCCCGGACGAGG	0.627													58	363					0	0	1	0	0
PRB4	5545	broad.mit.edu	37	12	11461349	11461349	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11461349C>T	uc001qzf.1	-	3	602	c.568G>A	c.(568-570)GAA>AAA	p.E190K	PRB4_uc001qzt.2_Missense_Mutation_p.E190K	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	253						extracellular region				ovary(1)	1						TTGTTGCCTTCTTGTTGGGGT	0.602										HNSCC(22;0.051)			83	252					0	0	1	0	0
PRB4	5545	broad.mit.edu	37	12	11461789	11461789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11461789C>T	uc001qzf.1	-	3	162	c.128G>A	c.(127-129)GGA>GAA	p.G43E	PRB4_uc001qzt.2_Missense_Mutation_p.G43E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	43	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|1.					extracellular region				ovary(1)	1						CTGGTTTCCTCCTTGTGGGCG	0.562										HNSCC(22;0.051)			98	248					0	0	1	0	0
PRB4	5545	broad.mit.edu	37	12	11461804	11461804	+	Missense_Mutation	SNP	C	T	T	rs150367358	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11461804C>T	uc001qzf.1	-	3	147	c.113G>A	c.(112-114)GGA>GAA	p.G38E	PRB4_uc001qzt.2_Missense_Mutation_p.G38E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	38	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|1.			LISGKPEGR -> IIPPKPPG (in Ref. 5; AA sequence).		extracellular region				ovary(1)	1						TGGGCGTCGTCCTTCTGGCTT	0.537										HNSCC(22;0.051)			31	279					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506447	11506447	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11506447C>T	uc001qzw.1	-	4	627	c.590G>A	c.(589-591)GGA>GAA	p.G197E	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	258	11.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGTGG	0.607													30	158					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506507	11506507	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11506507C>T	uc001qzw.1	-	4	567	c.530G>A	c.(529-531)GGA>GAA	p.G177E	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	238	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|10.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGAGG	0.602													84	137					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506690	11506690	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11506690C>T	uc001qzw.1	-	3	384	c.347G>A	c.(346-348)GGA>GAA	p.G116E	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	177	7.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGAGG	0.612													33	665					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11545877	11545877	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11545877C>T	uc010shk.1	-	3	1170	c.1135G>A	c.(1135-1137)GGT>AGT	p.G379S		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGTGGGGGACCTTGAGGATTG	0.632													49	140					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546350	11546350	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11546350G>A	uc010shk.1	-	3	697	c.662C>T	c.(661-663)CCA>CTA	p.P221L		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGTCCTTGTGGCTTTCCTGG	0.612													39	314					0	0	1	0	0
ETV6	2120	broad.mit.edu	37	12	11905494	11905494	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:11905494C>T	uc001qzz.2	+	2	418	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	48	PNT.					cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				AAGACTCGATCCGCCTGCCTG	0.622			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								22	56					0	0	1	0	0
ETV6	2120	broad.mit.edu	37	12	12006381	12006381	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:12006381C>T	uc001qzz.2	+	4	623	c.349C>T	c.(349-351)CTT>TTT	p.L117F		NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	117	PNT.					cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				CTATGAACTCCTTCAGCATAT	0.443			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								45	113					0	0	1	0	0
LRP6	4040	broad.mit.edu	37	12	12300456	12300456	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:12300456G>A	uc001rah.3	-	15	3383	c.3241C>T	c.(3241-3243)CCT>TCT	p.P1081S	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.P1081S	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1081	Extracellular (Potential).|LDL-receptor class B 18.|Beta-propeller 4.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				TCAATTTTAGGAGACCTTTCC	0.408													47	160					0	0	1	0	0
MANSC1	54682	broad.mit.edu	37	12	12483637	12483637	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:12483637G>A	uc001rai.1	-	4	878	c.620C>T	c.(619-621)TCA>TTA	p.S207L	MANSC1_uc010shm.1_Missense_Mutation_p.S141L|MANSC1_uc001raj.1_Missense_Mutation_p.S173L|MANSC1_uc009zht.1_Missense_Mutation_p.S126L	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	207	Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		GGAAAATTGTGAACTCTGAGA	0.463													20	51					0	0	1	0	0
MANSC1	54682	broad.mit.edu	37	12	12496026	12496026	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:12496026C>T	uc001rai.1	-	2	481	c.223G>A	c.(223-225)GGG>AGG	p.G75R	MANSC1_uc001raj.1_Missense_Mutation_p.G41R|MANSC1_uc009zht.1_Intron	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	75	MANSC.|Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		CACTATTTACCTGATATGTTT	0.418													37	78					0	0	1	0	0
GPR19	2842	broad.mit.edu	37	12	12814457	12814457	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:12814457G>A	uc001rar.3	-	2	1119	c.926C>T	c.(925-927)TCC>TTC	p.S309F	GPR19_uc001raq.2_Missense_Mutation_p.S309F	NM_006143	NP_006134	Q15760	GPR19_HUMAN	G protein-coupled receptor 19	309	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.048)		GAAAACAAGGGAACTTTTCTT	0.388													25	64					0	0	1	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028629	13028629	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13028629C>T	uc010sho.1	+	1	219	c.197C>T	c.(196-198)CCT>CTT	p.P66L		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						AACAGCAACCCTTCCCGAGGC	0.582													14	19					0	0	1	0	0
HTR7P1	93164	broad.mit.edu	37	12	13155411	13155411	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13155411C>T	uc010shq.1	+	1		c.2036C>T			HEBP1_uc001rbd.2_5'Flank|HEBP1_uc001rbf.2_5'Flank|HTR7P1_uc001rbh.2_Intron	NR_002774				Homo sapiens 5-hydroxytryptamine (serotonin) receptor 7 pseudogene (HTR7P), non-coding RNA.												0						GCAGCGACTACCTTGGGGATC	0.527													6	17					0	0	1	0	0
C12orf36	283422	broad.mit.edu	37	12	13529186	13529186	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13529186G>A	uc001rbs.1	-	2	372	c.154C>T	c.(154-156)CTG>TTG	p.L52L		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		cctccAAGCAGGTCAGAGAAC	0.05													20	77					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13715998	13715998	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13715998C>T	uc001rbt.2	-	13	4353	c.4174G>A	c.(4174-4176)GGG>AGG	p.G1392R		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1392	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGGTCGTCCCCAAAAGTGGGG	0.622													13	30					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716045	13716045	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13716045G>A	uc001rbt.2	-	13	4306	c.4127C>T	c.(4126-4128)TCG>TTG	p.S1376L		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1376	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGGGTAGAGCGACTTGCTGAG	0.587													11	31					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716551	13716551	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13716551C>T	uc001rbt.2	-	13	3800	c.3621G>A	c.(3619-3621)GAG>GAA	p.E1207E		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1207	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGGACCGGTCCTCCCACTCCA	0.637													30	75					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716834	13716834	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13716834G>A	uc001rbt.2	-	13	3517	c.3338C>T	c.(3337-3339)CCG>CTG	p.P1113L		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1113	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGAGCGGGGCGGTCGGCGACG	0.607													21	46					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716952	13716952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13716952C>T	uc001rbt.2	-	13	3399	c.3220G>A	c.(3220-3222)GAG>AAG	p.E1074K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1074	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCATTGCCCTCGATGTTCCCA	0.567													16	22					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717239	13717239	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13717239C>T	uc001rbt.2	-	13	3112	c.2933G>A	c.(2932-2934)AGC>AAC	p.S978N		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	978	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GTACACGTTGCTGTCCTTCAG	0.542													14	76					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717552	13717552	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13717552C>T	uc001rbt.2	-	13	2799	c.2620G>A	c.(2620-2622)GGG>AGG	p.G874R		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	874	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ATCGCCACCCCATGGATGCAG	0.527													37	114					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13720097	13720097	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13720097C>T	uc001rbt.2	-	12	2639	c.2460G>A	c.(2458-2460)GGG>GGA	p.G820G		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	820	Helical; (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGTAGAAGACCCCTGCCATGT	0.512													20	74					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13764672	13764672	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13764672G>A	uc001rbt.2	-	8	1946	c.1767C>T	c.(1765-1767)CTC>CTT	p.L589L		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	589	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGCCATCAGCGAGGCACCTGT	0.483													19	92					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13906452	13906452	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13906452G>A	uc001rbt.2	-	3	988	c.809C>T	c.(808-810)CCT>CTT	p.P270L		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	270	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GAACTCCGCAGGCACTGTGTC	0.547													14	61					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13906819	13906819	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:13906819G>A	uc001rbt.2	-	3	621	c.442C>T	c.(442-444)CCA>TCA	p.P148S		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	148	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCAATTGATGGGCCAAACTGG	0.398													5	45					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	14018779	14018779	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14018779G>A	uc001rbt.2	-	2	543	c.364C>T	c.(364-366)CCC>TCC	p.P122S		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	122	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCCAGGATGGGGGTGAGAGTC	0.547													60	133					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	14018946	14018946	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14018946G>A	uc001rbt.2	-	2	376	c.197C>T	c.(196-198)CCC>CTC	p.P66L		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	66	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding	p.P66P(2)		central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTCCACCCGGGGTACCACGGA	0.557													26	99					0	0	1	0	0
ATF7IP	55729	broad.mit.edu	37	12	14577226	14577226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14577226C>T	uc001rbw.2	+	2	535	c.377C>T	c.(376-378)CCT>CTT	p.P126L	ATF7IP_uc010shs.1_Missense_Mutation_p.P126L|ATF7IP_uc001rbu.2_Missense_Mutation_p.P126L|ATF7IP_uc001rbv.1_Missense_Mutation_p.P126L|ATF7IP_uc001rbx.2_Missense_Mutation_p.P126L|ATF7IP_uc010sht.1_Missense_Mutation_p.P126L|ATF7IP_uc001rby.3_Missense_Mutation_p.P126L|ATF7IP_uc001rbz.1_Missense_Mutation_p.P126L|ATF7IP_uc001rca.2_Missense_Mutation_p.P126L|ATF7IP_uc001rcb.2_5'Flank	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	126					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TCTAAACTGCCTGCTGAACCA	0.473													12	65					0	0	1	0	0
ATF7IP	55729	broad.mit.edu	37	12	14577496	14577496	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14577496C>T	uc001rbw.2	+	2	805	c.647C>T	c.(646-648)CCT>CTT	p.P216L	ATF7IP_uc010shs.1_Missense_Mutation_p.P216L|ATF7IP_uc001rbu.2_Missense_Mutation_p.P216L|ATF7IP_uc001rbv.1_Missense_Mutation_p.P216L|ATF7IP_uc001rbx.2_Missense_Mutation_p.P216L|ATF7IP_uc010sht.1_Missense_Mutation_p.P216L|ATF7IP_uc001rby.3_Missense_Mutation_p.P216L|ATF7IP_uc001rbz.1_Missense_Mutation_p.P216L|ATF7IP_uc001rca.2_Missense_Mutation_p.P216L|ATF7IP_uc001rcb.2_5'Flank	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	216					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						GAACCGGTCCCTGTTGAACCC	0.522													39	115					0	0	1	0	0
ATF7IP	55729	broad.mit.edu	37	12	14613922	14613922	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14613922C>T	uc001rbw.2	+	9	2810	c.2652C>T	c.(2650-2652)GCC>GCT	p.A884A	ATF7IP_uc010shs.1_3'UTR|ATF7IP_uc001rbu.2_Silent_p.A884A|ATF7IP_uc001rbv.1_Silent_p.A883A|ATF7IP_uc001rbx.2_Silent_p.A883A|ATF7IP_uc010sht.1_3'UTR|ATF7IP_uc001rby.3_Silent_p.A884A|ATF7IP_uc001rca.2_Silent_p.A884A	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	884					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TTGTACAAGCCACAAGGACTT	0.458													7	32					0	0	1	0	0
ATF7IP	55729	broad.mit.edu	37	12	14650966	14650966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14650966C>T	uc001rbw.2	+	15	3930	c.3772C>T	c.(3772-3774)CCT>TCT	p.P1258S	ATF7IP_uc001rbx.2_Missense_Mutation_p.P1257S|ATF7IP_uc001rby.3_Missense_Mutation_p.P1258S|ATF7IP_uc001rca.2_Missense_Mutation_p.P1258S	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	1258	Interaction with MBD1.|Fibronectin type-III.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TTTCTGTGATCCTCAGTCAAC	0.408													52	288					0	0	1	0	0
PLBD1	79887	broad.mit.edu	37	12	14664469	14664469	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14664469C>T	uc001rcc.1	-	7	1182	c.1021G>A	c.(1021-1023)GAC>AAC	p.D341N		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	341					lipid catabolic process	extracellular region	hydrolase activity				0						GAAAAGATGTCTGCCCACCTC	0.428													62	148					0	0	1	0	0
PLBD1	79887	broad.mit.edu	37	12	14706282	14706282	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14706282C>T	uc001rcc.1	-	2	341	c.180G>A	c.(178-180)ATG>ATA	p.M60I		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	60					lipid catabolic process	extracellular region	hydrolase activity				0						CATTCTTGTCCATTACATTTT	0.448													18	98					0	0	1	0	0
PLBD1	79887	broad.mit.edu	37	12	14706316	14706316	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14706316G>A	uc001rcc.1	-	2	307	c.146C>T	c.(145-147)CCT>CTT	p.P49L		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	49					lipid catabolic process	extracellular region	hydrolase activity				0						CTTTTCAGCAGGCATCCAGTA	0.408													19	90					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14766126	14766127	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14766126_14766127CC>TT	uc001rcd.2	-	27	3283_3284	c.3146_3147GG>AA	c.(3145-3147)CGG>CAA	p.R1049Q		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	1049	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AGCTGGCTACCCGTCTGGGTTT	0.431													68	250					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14772190	14772190	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14772190C>T	uc001rcd.2	-	24	2967	c.2830G>A	c.(2830-2832)GGA>AGA	p.G944R		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	944	Cytoplasmic (Potential).|Guanylate cyclase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						ACCGTATCTCCAAATAGACAA	0.478													27	69					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14781671	14781671	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14781671C>T	uc001rcd.2	-	20	2295	c.2158G>A	c.(2158-2160)GTG>ATG	p.V720M		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	720	Cytoplasmic (Potential).|Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AGTAGGTACACCTGGAAGAAA	0.363													14	72					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14792844	14792844	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14792844G>A	uc001rcd.2	-	19	2246	c.2109C>T	c.(2107-2109)CCC>CCT	p.P703P		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	703	Cytoplasmic (Potential).|Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						CTGGGCGGAAGGGTTTCATTC	0.308													7	125					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14809496	14809496	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14809496C>T	uc001rcd.2	-	12	1557	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	474	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AAGATATTTTCAGGAGGAATG	0.358													34	107					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14832636	14832636	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14832636C>T	uc001rcd.2	-	6	922	c.785G>A	c.(784-786)CGA>CAA	p.R262Q	GUCY2C_uc009zhz.2_Missense_Mutation_p.R262Q	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	262	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AGCCACTGCTCGGTCACCCTT	0.418													40	99					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14834375	14834375	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14834375G>A	uc001rcd.2	-	5	785	c.648C>T	c.(646-648)TTC>TTT	p.F216F	GUCY2C_uc009zhz.2_Silent_p.F216F	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	216	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						GTTCGTGGGAGAAATAGGAAA	0.418													14	64					0	0	1	0	0
WBP11	51729	broad.mit.edu	37	12	14942001	14942001	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:14942001G>A	uc001rci.2	-	11	1537	c.1376C>T	c.(1375-1377)CCT>CTT	p.P459L		NM_016312	NP_057396	Q9Y2W2	WBP11_HUMAN	WW domain binding protein 11	459	Pro-rich.|PGR.				mRNA processing|RNA splicing|rRNA processing	cytoplasm	single-stranded DNA binding|WW domain binding			ovary(1)|lung(1)	2						TGGTCCTGGAGGTAAAAGTCG	0.597													7	25					0	0	1	0	0
ERP27	121506	broad.mit.edu	37	12	15090909	15090909	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15090909C>T	uc001rco.2	-	2	193	c.172G>A	c.(172-174)GTG>ATG	p.V58M		NM_152321	NP_689534	Q96DN0	ERP27_HUMAN	endoplasmic reticulum protein 27 kDa precursor	58	Thioredoxin.					endoplasmic reticulum lumen				breast(1)	1						ATGACAGCCACCTCAGTGGCA	0.532													33	143					0	0	1	0	0
ERP27	121506	broad.mit.edu	37	12	15090925	15090925	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15090925G>A	uc001rco.2	-	2	177	c.156C>T	c.(154-156)TTC>TTT	p.F52F		NM_152321	NP_689534	Q96DN0	ERP27_HUMAN	endoplasmic reticulum protein 27 kDa precursor	52	Thioredoxin.					endoplasmic reticulum lumen				breast(1)	1						TGGCAGCAATGAATTCCATGG	0.522													12	154					0	0	1	0	0
RERG	85004	broad.mit.edu	37	12	15262412	15262412	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15262412C>T	uc001rcs.2	-	4	372	c.232G>A	c.(232-234)GAA>AAA	p.E78K	RERG_uc001rct.2_Missense_Mutation_p.E78K|RERG_uc010shu.1_Missense_Mutation_p.E59K	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	78					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						ACAAAGCCTTCCCCCCATCGC	0.458													51	464					0	0	1	0	0
RERG	85004	broad.mit.edu	37	12	15262433	15262433	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15262433C>T	uc001rcs.2	-	4	351	c.211G>A	c.(211-213)GAG>AAG	p.E71K	RERG_uc001rct.2_Missense_Mutation_p.E71K|RERG_uc010shu.1_Missense_Mutation_p.E52K	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	71					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						ATGTGCCCCTCCCTCTGAATG	0.463													84	371					0	0	1	0	0
RERG	85004	broad.mit.edu	37	12	15262451	15262451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15262451C>T	uc001rcs.2	-	4	333	c.193G>A	c.(193-195)GAA>AAA	p.E65K	RERG_uc001rct.2_Missense_Mutation_p.E65K|RERG_uc010shu.1_Missense_Mutation_p.E46K	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	65					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						ATGGTATCTTCCTGTTGGCAA	0.443													78	299					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15637062	15637062	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15637062C>T	uc001rcv.1	+	2	404	c.230C>T	c.(229-231)ACT>ATT	p.T77I	PTPRO_uc001rcw.1_Missense_Mutation_p.T77I|PTPRO_uc001rcu.1_Missense_Mutation_p.T77I	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	77	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				TTCAACAGCACTTTGCCTCCT	0.393													21	54					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15661511	15661511	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15661511C>T	uc001rcv.1	+	7	1448	c.1274C>T	c.(1273-1275)TCA>TTA	p.S425L	PTPRO_uc001rcw.1_Missense_Mutation_p.S425L|PTPRO_uc001rcu.1_Missense_Mutation_p.S425L	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	425	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				GCAGGTCCTTCAGGAGAGTGG	0.458													4	24					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15677785	15677785	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15677785C>T	uc001rcv.1	+	11	2103	c.1929C>T	c.(1927-1929)TTC>TTT	p.F643F	PTPRO_uc001rcw.1_Silent_p.F643F	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	643	Fibronectin type-III 7.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				TGGAATATTTCAACAGTCTGT	0.408													27	68					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15702076	15702076	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15702076C>T	uc001rcv.1	+	14	2527	c.2353C>T	c.(2353-2355)CCT>TCT	p.P785S	PTPRO_uc001rcw.1_Missense_Mutation_p.P785S|PTPRO_uc001rcx.1_5'UTR|PTPRO_uc001rcy.1_5'UTR|PTPRO_uc001rcz.1_5'UTR|PTPRO_uc001rda.1_5'UTR	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	785	Fibronectin type-III 8.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				CAGCCTTCTTCCTGCCACTGC	0.428													80	173					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15734690	15734690	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:15734690G>A	uc001rcv.1	+	23	3384	c.3210G>A	c.(3208-3210)GAG>GAA	p.E1070E	PTPRO_uc001rcw.1_Silent_p.E1042E|PTPRO_uc001rcx.1_Silent_p.E259E|PTPRO_uc001rcy.1_Silent_p.E259E|PTPRO_uc001rcz.1_Silent_p.E231E|PTPRO_uc001rda.1_Silent_p.E231E	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	1070	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				TGATTTCAGAGGAAGAGCAGG	0.468													28	60					0	0	1	0	0
RERGL	79785	broad.mit.edu	37	12	18234369	18234369	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18234369C>T	uc001rdq.2	-	6	568	c.374G>A	c.(373-375)CGA>CAA	p.R125Q	RERGL_uc001rdr.2_Missense_Mutation_p.R124Q	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	125	GTP (By similarity).|Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						ACAAAGATCTCGTTTGTTGCC	0.408													35	83					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18435305	18435305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18435305C>T	uc001rdt.2	+	2	406	c.290C>T	c.(289-291)TCC>TTC	p.S97F	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.S97F|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	97					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CGTGAACTCTCCTGGCATCAA	0.423													30	115					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18524140	18524140	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18524140C>T	uc001rdt.2	+	12	1768	c.1652C>T	c.(1651-1653)TCA>TTA	p.S551L	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.S592L|PIK3C2G_uc010sic.1_Missense_Mutation_p.S370L	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	551					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GAAATAAAGTCACTTCCAAGG	0.368													8	18					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18524229	18524229	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18524229C>T	uc001rdt.2	+	12	1857	c.1741C>T	c.(1741-1743)CCA>TCA	p.P581S	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.P622S|PIK3C2G_uc010sic.1_Missense_Mutation_p.P400S	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	581					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GACTTGTCTTCCACTGTTTCC	0.358													9	32					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691100	18691100	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18691100C>T	uc001rdt.2	+	24	3327	c.3211C>T	c.(3211-3213)CCT>TCT	p.P1071S	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.P1112S|PIK3C2G_uc010sic.1_Missense_Mutation_p.P890S	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1071	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GGACCGAGCTCCTTTCATTTT	0.368													27	51					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18865907	18865907	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18865907C>T	uc010sid.1	-	6	774	c.583G>A	c.(583-585)GGA>AGA	p.G195R	PLCZ1_uc001rdv.3_Missense_Mutation_p.G91R|PLCZ1_uc001rdw.3_Intron|PLCZ1_uc001rdu.1_5'UTR|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	195	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					CAACGGCATCCTTTCACAAGG	0.358													8	72					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18865911	18865911	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18865911C>T	uc010sid.1	-	6	770	c.579G>A	c.(577-579)GTG>GTA	p.V193V	PLCZ1_uc001rdv.3_Silent_p.V89V|PLCZ1_uc001rdw.3_Intron|PLCZ1_uc001rdu.1_5'UTR|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	193	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					GGCATCCTTTCACAAGGGCAC	0.348													22	55					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18876381	18876381	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18876381G>A	uc010sid.1	-	4	422	c.231C>T	c.(229-231)TTC>TTT	p.F77F	PLCZ1_uc001rdv.3_5'UTR|PLCZ1_uc001rdw.3_Intron	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	77					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					AATATGTGTTGAAAATCTCAA	0.348													23	52					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891226	18891226	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18891226G>A	uc001rdy.2	+	1	182	c.24G>A	c.(22-24)AGG>AGA	p.R8R	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	8					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				TGCTGAGCAGGAAGGACAAGG	0.433													25	75					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891236	18891236	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:18891236G>A	uc001rdy.2	+	1	192	c.34G>A	c.(34-36)GAA>AAA	p.E12K	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	12					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GAAGGACAAGGAAAGAGTAAT	0.423													8	91					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20522568	20522568	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:20522568G>A	uc001reh.1	+	1	372	c.350G>A	c.(349-351)GGA>GAA	p.G117E		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	117					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	GGGCCTCGGGGAGGTGCTCCC	0.706													4	8					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20709625	20709625	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:20709625G>A	uc001reh.1	+	2	1014	c.992G>A	c.(991-993)CGA>CAA	p.R331Q		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	331					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	GACCACAAACGAGGGCCAAGA	0.348													17	146					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20782849	20782849	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:20782849C>T	uc001reh.1	+	6	1570	c.1548C>T	c.(1546-1548)CTC>CTT	p.L516L		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	516					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CAGGTGCCCTCGCTAAAATTT	0.438													33	85					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20782881	20782881	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:20782881C>T	uc001reh.1	+	6	1602	c.1580C>T	c.(1579-1581)TCC>TTC	p.S527F		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	527					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TCGCCCTGCTCCTCACCTCTC	0.453													39	104					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20790053	20790053	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:20790053C>T	uc001reh.1	+	9	2043	c.2021C>T	c.(2020-2022)CCC>CTC	p.P674L		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	674					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	ATTCTTGCTCCCGAACCTCTT	0.333													18	36					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20801637	20801637	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:20801637G>A	uc001reh.1	+	13	2603	c.2581G>A	c.(2581-2583)GAT>AAT	p.D861N		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	861	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	GCTATATAACGATCGTTCAGT	0.368													39	107					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20801753	20801753	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:20801753C>T	uc001reh.1	+	13	2719	c.2697C>T	c.(2695-2697)TTC>TTT	p.F899F		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	899	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	ATTTCCGTTTCCTTGTCATTG	0.398													24	102					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20806929	20806929	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:20806929C>T	uc001reh.1	+	15	2996	c.2974C>T	c.(2974-2976)CGT>TGT	p.R992C		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	992	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CTTCATGGATCGTTCTGCTCC	0.468													22	64					0	0	1	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20893163	20893163	+	Missense_Mutation	SNP	G	A	A	rs149798560		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:20893163G>A	uc001rej.3	+	13	1949	c.1594G>A	c.(1594-1596)GGA>AGA	p.G532R	SLCO1C1_uc010sii.1_Missense_Mutation_p.G532R|SLCO1C1_uc010sij.1_Missense_Mutation_p.G483R|SLCO1C1_uc009zip.2_Missense_Mutation_p.G366R|SLCO1C1_uc001rei.2_Missense_Mutation_p.G532R|SLCO1C1_uc010sik.1_Missense_Mutation_p.G414R	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	532	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TTCTAAATCCGGAAATTCCTC	0.353													27	98					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21028279	21028279	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21028279C>T	uc001rek.2	+	8	964	c.838C>T	c.(838-840)CCG>TCG	p.P280S	SLCO1B3_uc001rel.2_Missense_Mutation_p.P280S|SLCO1B3_uc010sil.1_Missense_Mutation_p.P280S|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.P105S	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	280	Helical; Name=6; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TTTTTTCTTGCCGAAAAATCC	0.348													24	84					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032513	21032513	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21032513C>T	uc001rek.2	+	10	1405	c.1279C>T	c.(1279-1281)CCT>TCT	p.P427S	SLCO1B3_uc001rel.2_Missense_Mutation_p.P427S|SLCO1B3_uc010sil.1_Missense_Mutation_p.P427S|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.P252S	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	427	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TCTATATTTCCCTCTAATCTG	0.308													22	54					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21033937	21033937	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21033937G>A	uc001rek.2	+	11	1606	c.1480G>A	c.(1480-1482)GGT>AGT	p.G494S	SLCO1B3_uc001rel.2_Missense_Mutation_p.G494S|SLCO1B3_uc010sil.1_Missense_Mutation_p.G494S|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.G319S	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	494	Extracellular (Potential).|Kazal-like.				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ATCCTCAAGTGGTATTAAAAA	0.358													47	119					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21036508	21036508	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21036508G>A	uc001rek.2	+	12	1780	c.1654G>A	c.(1654-1656)GGT>AGT	p.G552S	SLCO1B3_uc001rel.2_Missense_Mutation_p.G552S|SLCO1B3_uc010sil.1_Missense_Mutation_p.G552S|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.G377S	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	552	Helical; Name=10; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TGCAACAGGAGGTACCACATT	0.343													12	111					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21069001	21069001	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21069001C>T	uc001rek.2	+	15	2055	c.1929C>T	c.(1927-1929)TTC>TTT	p.F643F	SLCO1B3_uc001rel.2_Silent_p.F643F|SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	643	Helical; Name=12; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ATATTGTTTTCATTTTTGCTA	0.303													15	45					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21069026	21069026	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21069026C>T	uc001rek.2	+	15	2080	c.1954C>T	c.(1954-1956)CAA>TAA	p.Q652*	SLCO1B3_uc001rel.2_Nonsense_Mutation_p.Q652*|SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	652	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GAAAAAATTTCAAGGAAAAGA	0.333													17	33					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21175852	21175852	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21175852G>A	uc010sin.1	+	4	409	c.409G>A	c.(409-411)GGG>AGG	p.G137R	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.G184R	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	137						membrane	transporter activity				0						TCGTGGCATAGGGGAAACCCC	0.368													15	123					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21175855	21175855	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21175855G>A	uc010sin.1	+	4	412	c.412G>A	c.(412-414)GAA>AAA	p.E138K	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.E185K	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	138						membrane	transporter activity				0						TGGCATAGGGGAAACCCCCAT	0.368													36	101					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21196326	21196326	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21196326C>T	uc010sin.1	+	6	645	c.645C>T	c.(643-645)TTC>TTT	p.F215F	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Silent_p.F262F	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	215						membrane	transporter activity				0						GGCTTGGTTTCCTTGTGTCTG	0.353													54	173					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205029	21205029	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21205029G>A	uc010sin.1	+	9	1191	c.1191_splice	c.e9-1	p.G397_splice	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Splice_Site_p.G444_splice	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12							membrane	transporter activity				0						TATATTTTCAGAAATAGTCCA	0.224													15	48					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205122	21205122	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21205122G>A	uc010sin.1	+	9	1283	c.1283G>A	c.(1282-1284)GGA>GAA	p.G428E	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.G475E	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	428						membrane	transporter activity				0						CCCGTCTGTGGAAACAATGGA	0.378													37	96					0	0	1	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21331581	21331581	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21331581G>A	uc001req.3	+	6	657	c.553G>A	c.(553-555)GAG>AAG	p.E185K		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	185	Helical; Name=4; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	TGGAATAGGGGAGACTCCCAT	0.348													37	114					0	0	1	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21370127	21370127	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21370127C>T	uc001req.3	+	12	1676	c.1572C>T	c.(1570-1572)TGC>TGT	p.C524C		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	524	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	TGGGTGAATGCCCAAGAGATG	0.383													24	53					0	0	1	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21422680	21422680	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21422680C>T	uc001rer.2	-	14	2066	c.1815G>A	c.(1813-1815)CCG>CCA	p.P605P	SLCO1A2_uc001res.2_Silent_p.P605P|SLCO1A2_uc010siq.1_Silent_p.P473P|SLCO1A2_uc010sio.1_Silent_p.P473P|SLCO1A2_uc010sip.1_Silent_p.P473P	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	605	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TTAGTGCTGCCGGCAATCCGA	0.343													30	102					0	0	1	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21453372	21453372	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21453372C>T	uc001rer.2	-	7	1071	c.820G>A	c.(820-822)GGA>AGA	p.G274R	SLCO1A2_uc001res.2_Missense_Mutation_p.G274R|SLCO1A2_uc010siq.1_Missense_Mutation_p.G142R|SLCO1A2_uc010sio.1_Missense_Mutation_p.G142R|SLCO1A2_uc010sip.1_Missense_Mutation_p.G142R|SLCO1A2_uc001ret.2_Missense_Mutation_p.G272R|SLCO1A2_uc001reu.2_Missense_Mutation_p.G254R	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	274	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GTCTCTAGTCCTTCCTTTGGA	0.388													13	52					0	0	1	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21459852	21459852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21459852C>T	uc001rer.2	-	4	657	c.406G>A	c.(406-408)GGA>AGA	p.G136R	SLCO1A2_uc001res.2_Missense_Mutation_p.G136R|SLCO1A2_uc010siq.1_Missense_Mutation_p.G4R|SLCO1A2_uc010sio.1_Missense_Mutation_p.G4R|SLCO1A2_uc010sip.1_Missense_Mutation_p.G4R|SLCO1A2_uc001ret.2_Missense_Mutation_p.G134R|SLCO1A2_uc001reu.2_Missense_Mutation_p.G116R	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	136	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						ATCTGGGTTCCATTTTCCATA	0.358													11	54					0	0	1	0	0
PYROXD1	79912	broad.mit.edu	37	12	21614955	21614955	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21614955C>T	uc001rew.2	+	9	1021	c.894C>T	c.(892-894)GTC>GTT	p.V298V	PYROXD1_uc009ziq.2_Silent_p.V39V|PYROXD1_uc009zir.2_Silent_p.V4V	NM_024854	NP_079130	Q8WU10	PYRD1_HUMAN	pyridine nucleotide-disulphide oxidoreductase	298							oxidoreductase activity			ovary(1)	1						TGTGGCCTGTCTATGTGGAAT	0.368													27	48					0	0	1	0	0
RECQL	5965	broad.mit.edu	37	12	21624011	21624011	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21624011A>G	uc001rex.2	-	15	2037	c.1689T>C	c.(1687-1689)GCT>GCC	p.A563A	RECQL_uc001rey.2_Silent_p.A563A|PYROXD1_uc001rew.2_3'UTR|PYROXD1_uc009ziq.2_3'UTR|PYROXD1_uc009zir.2_3'UTR	NM_032941	NP_116559	P46063	RECQ1_HUMAN	RecQ protein-like	563					DNA recombination|DNA repair|DNA replication	nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|DNA strand annealing activity|protein binding			ovary(1)|lung(1)	2						TGGTAGCATAAGCTGTAAAAC	0.338								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					32	76					0	0	1	0	0
RECQL	5965	broad.mit.edu	37	12	21652496	21652496	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21652496G>A	uc001rex.2	-	3	357	c.9C>T	c.(7-9)TCC>TCT	p.S3S	RECQL_uc001rey.2_Silent_p.S3S|GOLT1B_uc001rez.2_5'Flank|GOLT1B_uc009zis.2_5'Flank|GOLT1B_uc009zit.2_5'Flank|GOLT1B_uc009ziu.2_5'Flank	NM_032941	NP_116559	P46063	RECQ1_HUMAN	RecQ protein-like	3					DNA recombination|DNA repair|DNA replication	nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|DNA strand annealing activity|protein binding			ovary(1)|lung(1)	2						AACCTGAAACGGACGCCATTC	0.264								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					25	77					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21689995	21689995	+	Missense_Mutation	SNP	C	T	T	rs142656537	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21689995C>T	uc001rfb.2	-	16	2260	c.2005G>A	c.(2005-2007)GAT>AAT	p.D669N		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	669					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TCTTCCTCATCGTATCTCTCA	0.483													22	86					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21690081	21690081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21690081G>A	uc001rfb.2	-	16	2174	c.1919C>T	c.(1918-1920)TCC>TTC	p.S640F		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	640					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TGGTACTGAGGAAGGCCTGGG	0.443													15	41					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21695445	21695445	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21695445C>T	uc001rfb.2	-	13	1885	c.1630G>A	c.(1630-1632)GAT>AAT	p.D544N		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	544					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						GCAGTAGGATCAGCCACGTGC	0.507													10	38					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21715852	21715852	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21715852C>T	uc001rfb.2	-	7	1317	c.1062G>A	c.(1060-1062)AGG>AGA	p.R354R		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	354					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						GCTTTCTTACCCTCAGCAGGA	0.383													24	156					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21727167	21727167	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21727167G>A	uc001rfb.2	-	4	844	c.589C>T	c.(589-591)CCT>TCT	p.P197S		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	197					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						GTGGCAATAGGAAGTTTCCTG	0.418													14	84					0	0	1	0	0
KCNJ8	3764	broad.mit.edu	37	12	21919003	21919003	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21919003C>T	uc001rff.2	-	3	1267	c.929G>A	c.(928-930)CGA>CAA	p.R310Q		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	310	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	GTAGGAGGTTCGTGCTTGTGT	0.483													21	76					0	0	1	0	0
KCNJ8	3764	broad.mit.edu	37	12	21926377	21926377	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21926377C>T	uc001rff.2	-	2	512	c.174G>A	c.(172-174)CAG>CAA	p.Q58Q		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	58	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	TGAAGATGTCCTGTAGAAAGC	0.582											OREG0021704	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	62					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	21954013	21954013	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21954013C>T	uc001rfh.2	-	38	4635	c.4615G>A	c.(4615-4617)GGA>AGA	p.G1539R	ABCC9_uc001rfg.2_Missense_Mutation_p.G68R	NM_020297	NP_064693	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1539	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GCAAATACTCCATTTTCCTGA	0.378													17	56					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	21954063	21954063	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21954063C>T	uc001rfh.2	-	38	4585	c.4565G>A	c.(4564-4566)GGA>GAA	p.G1522E	ABCC9_uc001rfg.2_Missense_Mutation_p.G51E	NM_020297	NP_064693	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1522	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TAAAATATTTCCTCGCTTCAT	0.408													8	70					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	21958140	21958140	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21958140G>A	uc001rfi.1	-	38	4638	c.4618C>T	c.(4618-4620)CTC>TTC	p.L1540F	ABCC9_uc001rfh.2_Intron|ABCC9_uc001rfj.1_Missense_Mutation_p.L1504F|ABCC9_uc001rfg.2_Intron	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1540	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GTGGAAAAGAGGCCATTCTTG	0.423													19	34					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	21965021	21965021	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21965021G>A	uc001rfi.1	-	34	4193	c.4173C>T	c.(4171-4173)ATC>ATT	p.I1391I	ABCC9_uc001rfh.2_Silent_p.I1391I|ABCC9_uc001rfj.1_Silent_p.I1355I	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1391	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CCTGCAGAATGATTGAAAGTC	0.383													11	112					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	21967619	21967619	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:21967619G>A	uc001rfi.1	-	33	4081	c.4061C>T	c.(4060-4062)TCG>TTG	p.S1354L	ABCC9_uc001rfh.2_Missense_Mutation_p.S1354L|ABCC9_uc001rfj.1_Missense_Mutation_p.S1318L	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1354	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAGAGATAACGATGATTTCCC	0.403													10	92					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22025612	22025612	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:22025612G>A	uc001rfi.1	-	16	2165	c.2145C>T	c.(2143-2145)CTC>CTT	p.L715L	ABCC9_uc001rfh.2_Silent_p.L715L|ABCC9_uc001rfj.1_Silent_p.L679L	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	715	Cytoplasmic (Potential).|ABC transporter 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GGATGGCAAGGAGAAGAGAGG	0.423													77	172					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22040797	22040797	+	Missense_Mutation	SNP	G	A	A	rs75460545	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:22040797G>A	uc001rfi.1	-	13	1894	c.1874C>T	c.(1873-1875)TCG>TTG	p.S625L	ABCC9_uc001rfh.2_Missense_Mutation_p.S625L|ABCC9_uc001rfj.1_Missense_Mutation_p.S625L	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	625	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AAAAGGAAGCGAACTTTCACC	0.398													24	91					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22047044	22047044	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:22047044A>T	uc001rfi.1	-	12	1744	c.1724T>A	c.(1723-1725)CTG>CAG	p.L575Q	ABCC9_uc001rfh.2_Missense_Mutation_p.L575Q|ABCC9_uc001rfj.1_Missense_Mutation_p.L575Q	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	575	Helical; Name=11; (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GAAGAGAGACAGTGAAGCAAA	0.478													13	97					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22061092	22061092	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:22061092G>A	uc001rfi.1	-	9	1394	c.1374C>T	c.(1372-1374)GTC>GTT	p.V458V	ABCC9_uc001rfh.2_Silent_p.V458V|ABCC9_uc001rfj.1_Silent_p.V458V	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	458	ABC transmembrane type-1 1.|Helical; Name=9; (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAGCTGCACCGACCAATGCAC	0.413													21	40					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22063225	22063225	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:22063225G>A	uc001rfi.1	-	8	1206	c.1186C>T	c.(1186-1188)CTT>TTT	p.L396F	ABCC9_uc001rfh.2_Missense_Mutation_p.L396F|ABCC9_uc001rfj.1_Missense_Mutation_p.L396F	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	396	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GAGAGCCTAAGGATTTTATTA	0.328													40	73					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22089606	22089606	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:22089606C>T	uc001rfi.1	-	1	23	c.3G>A	c.(1-3)ATG>ATA	p.M1I	ABCC9_uc001rfh.2_Missense_Mutation_p.M1I|ABCC9_uc001rfj.1_Missense_Mutation_p.M1I|ABCC9_uc001rfk.2_Missense_Mutation_p.M1I|ABCC9_uc001rfl.1_Missense_Mutation_p.M1I	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1	Extracellular (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ATGAAAGGCTCATTTCTTCTT	0.333													23	58					0	0	1	0	0
KIAA0528	9847	broad.mit.edu	37	12	22624383	22624383	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:22624383G>A	uc001rfq.2	-	20	2536	c.2308C>T	c.(2308-2310)CTT>TTT	p.L770F	KIAA0528_uc010sir.1_Missense_Mutation_p.L585F|KIAA0528_uc010sis.1_Missense_Mutation_p.L770F|KIAA0528_uc010sit.1_Missense_Mutation_p.L772F|KIAA0528_uc010siu.1_Missense_Mutation_p.L770F|KIAA0528_uc001rfr.2_Missense_Mutation_p.L761F	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	770							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						ACATGGCAAAGGCAGCAGGGG	0.284													38	69					0	0	1	0	0
SOX5	6660	broad.mit.edu	37	12	23818459	23818459	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:23818459G>A	uc001rfw.2	-	7	952	c.850C>T	c.(850-852)CCT>TCT	p.P284S	SOX5_uc001rfx.2_Missense_Mutation_p.P271S|SOX5_uc001rfy.2_Missense_Mutation_p.P271S|SOX5_uc010siv.1_Missense_Mutation_p.P271S|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.P236S	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	284					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						TGATCAGGAGGGAATACGGGA	0.493													18	130					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	24736816	24736816	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:24736816G>A	uc001rgb.1	-	1		c.287C>T								Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		CCTAGGAAACGAAGTAAAAAG	0.527													8	65					0	0	1	0	0
C12orf77	196415	broad.mit.edu	37	12	25148783	25148783	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:25148783T>A	uc001rgf.2	-	3	570	c.365A>T	c.(364-366)AAA>ATA	p.K122I		NM_001101339	NP_001094809	C9JDV5	CL097_HUMAN	hypothetical protein LOC196415	122											0						TGGGTTTCTTTTTGTAAAGTC	0.408													20	40					0	0	1	0	0
LRMP	4033	broad.mit.edu	37	12	25243010	25243010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:25243010C>T	uc001rgh.2	+	13	1519	c.485C>T	c.(484-486)TCT>TTT	p.S162F	LRMP_uc010sja.1_Missense_Mutation_p.S162F|LRMP_uc010sjb.1_Missense_Mutation_p.S109F|LRMP_uc001rgi.2_RNA|LRMP_uc010sjc.1_Missense_Mutation_p.S162F|LRMP_uc010sjd.1_Missense_Mutation_p.S109F	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	218	Cytoplasmic (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					CTCAGATTATCTTTGGGATTT	0.393													47	114					0	0	1	0	0
LRMP	4033	broad.mit.edu	37	12	25257389	25257389	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:25257389G>A	uc001rgh.2	+	19	2175	c.1141G>A	c.(1141-1143)GAA>AAA	p.E381K	LRMP_uc010sja.1_Missense_Mutation_p.E381K|LRMP_uc010sjb.1_Missense_Mutation_p.E328K|LRMP_uc001rgi.2_Intron|LRMP_uc010sjc.1_Missense_Mutation_p.E381K|LRMP_uc010sjd.1_Missense_Mutation_p.E328K	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	437	Cytoplasmic (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					AGAAAAATGTGAACTAAAGTA	0.388													7	41					0	0	1	0	0
LRMP	4033	broad.mit.edu	37	12	25260919	25260919	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:25260919G>A	uc001rgh.2	+	21	2459	c.1425G>A	c.(1423-1425)GAG>GAA	p.E475E	LRMP_uc010sja.1_Silent_p.E475E|LRMP_uc010sjb.1_Silent_p.E422E|LRMP_uc001rgi.2_RNA|LRMP_uc010sjc.1_Silent_p.E475E|LRMP_uc010sjd.1_Silent_p.E422E	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	531	Lumenal (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					CACAGCAAGAGGACTCATGGA	0.483													27	100					0	0	1	0	0
CASC1	55259	broad.mit.edu	37	12	25261739	25261739	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:25261739C>T	uc001rgl.2	-	15	1976	c.1894G>A	c.(1894-1896)GAA>AAA	p.E632K	CASC1_uc001rgk.2_Missense_Mutation_p.E638K|CASC1_uc001rgm.3_Intron|CASC1_uc001rgj.2_Missense_Mutation_p.E592K|CASC1_uc010sje.1_Missense_Mutation_p.E573K|CASC1_uc010sjf.1_Intron	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	632										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			GTACATGCTTCAGTAAGGTGT	0.363													8	21					0	0	1	0	0
CASC1	55259	broad.mit.edu	37	12	25311436	25311436	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:25311436C>T	uc001rgl.2	-	3	232	c.150G>A	c.(148-150)GAG>GAA	p.E50E	CASC1_uc001rgk.2_Silent_p.E56E|CASC1_uc001rgm.3_Silent_p.E114E|CASC1_uc001rgj.2_Silent_p.E10E|CASC1_uc010sje.1_Intron|CASC1_uc010sjf.1_Intron|CASC1_uc010sjg.1_Silent_p.E50E|CASC1_uc010sjh.1_RNA	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	50	Glu-rich.									ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			ATTTTTCTTTCTCAATTCGCT	0.289													28	34					0	0	1	0	0
IFLTD1	160492	broad.mit.edu	37	12	25679772	25679772	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:25679772C>T	uc001rgs.2	-	4	696	c.546G>A	c.(544-546)GTG>GTA	p.V182V	IFLTD1_uc001rgt.1_Silent_p.V85V|IFLTD1_uc010sji.1_Silent_p.V203V|IFLTD1_uc010sjj.1_Silent_p.V119V|IFLTD1_uc009zjc.2_Silent_p.V203V	NM_152590	NP_689803	Q8N9Z9	ILFT1_HUMAN	intermediate filament tail domain containing 1	182						intermediate filament	structural molecule activity			ovary(2)|central_nervous_system(1)	3	all_lung(3;2.75e-22)|Lung NSC(3;1.77e-21)|all_hematologic(7;0.00656)|Colorectal(261;0.0847)					TTTGTCCATTCACATTTTGCT	0.368													30	59					0	0	1	0	0
IFLTD1	160492	broad.mit.edu	37	12	25699359	25699359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:25699359G>A	uc001rgs.2	-	3	527	c.377C>T	c.(376-378)ACT>ATT	p.T126I	IFLTD1_uc001rgt.1_Missense_Mutation_p.T29I|IFLTD1_uc010sji.1_Missense_Mutation_p.T147I|IFLTD1_uc010sjj.1_Missense_Mutation_p.T63I|IFLTD1_uc009zjc.2_Missense_Mutation_p.T147I	NM_152590	NP_689803	Q8N9Z9	ILFT1_HUMAN	intermediate filament tail domain containing 1	126						intermediate filament	structural molecule activity			ovary(2)|central_nervous_system(1)	3	all_lung(3;2.75e-22)|Lung NSC(3;1.77e-21)|all_hematologic(7;0.00656)|Colorectal(261;0.0847)					GTATTTTAAAGTTTTCTGAGT	0.363													23	61					0	0	1	0	0
IFLTD1	160492	broad.mit.edu	37	12	25702421	25702421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:25702421G>A	uc001rgs.2	-	2	236	c.86C>T	c.(85-87)TCA>TTA	p.S29L	IFLTD1_uc001rgt.1_5'UTR|IFLTD1_uc010sji.1_Missense_Mutation_p.S50L|IFLTD1_uc010sjj.1_Intron|IFLTD1_uc009zjc.2_Missense_Mutation_p.S50L	NM_152590	NP_689803	Q8N9Z9	ILFT1_HUMAN	intermediate filament tail domain containing 1	29						intermediate filament	structural molecule activity			ovary(2)|central_nervous_system(1)	3	all_lung(3;2.75e-22)|Lung NSC(3;1.77e-21)|all_hematologic(7;0.00656)|Colorectal(261;0.0847)					TGTGGCAACTGAACCCAACAT	0.333													25	94					0	0	1	0	0
RASSF8	11228	broad.mit.edu	37	12	26217491	26217491	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:26217491C>T	uc001rgx.2	+	3	385	c.164C>T	c.(163-165)CCT>CTT	p.P55L	RASSF8_uc001rgy.2_Missense_Mutation_p.P55L|RASSF8_uc001rgz.2_Missense_Mutation_p.P55L|RASSF8_uc009zjd.1_Missense_Mutation_p.P55L|RASSF8_uc009zje.1_Missense_Mutation_p.P55L	NM_007211	NP_009142	Q8NHQ8	RASF8_HUMAN	Ras association (RalGDS/AF-6) domain family	55	Ras-associating.				signal transduction						0	Colorectal(261;0.0847)					CACTTAGCACCTCATGAAAAT	0.428													27	119					0	0	1	0	0
ITPR2	3709	broad.mit.edu	37	12	26572089	26572089	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:26572089G>A	uc001rhg.2	-	50	7420	c.7003C>T	c.(7003-7005)CGT>TGT	p.R2335C	ITPR2_uc009zjg.1_Missense_Mutation_p.R486C	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	2335	Extracellular (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					CGGTACCCACGGGTGAACGTG	0.433													33	56					0	0	1	0	0
ITPR2	3709	broad.mit.edu	37	12	26636735	26636735	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:26636735G>A	uc001rhg.2	-	42	6325	c.5908C>T	c.(5908-5910)CTG>TTG	p.L1970L	ITPR2_uc009zjg.1_Silent_p.L121L	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1970	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					AACAGGCCCAGGCCACCGGTT	0.468													23	176					0	0	1	0	0
ITPR2	3709	broad.mit.edu	37	12	26839553	26839553	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:26839553G>A	uc001rhg.2	-	11	1426	c.1009C>T	c.(1009-1011)CCT>TCT	p.P337S		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	337	Cytoplasmic (Potential).|MIR 4.				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					GAAGTTGGAGGGACTCCATCT	0.398													35	177					0	0	1	0	0
ITPR2	3709	broad.mit.edu	37	12	26868297	26868297	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:26868297G>A	uc001rhg.2	-	8	1207	c.790C>T	c.(790-792)CTT>TTT	p.L264F		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	264	Cytoplasmic (Potential).|MIR 3.				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					GTCGTACGAAGGAAAATGTGC	0.373													28	133					0	0	1	0	0
C12orf11	55726	broad.mit.edu	37	12	27081176	27081176	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:27081176C>T	uc001rhk.3	-	5	1083	c.546G>A	c.(544-546)ACG>ACA	p.T182T	C12orf11_uc010sjk.1_Silent_p.T81T	NM_018164	NP_060634	Q9NVM9	M89BB_HUMAN	hypothetical protein LOC55726	182					cell division|mitosis|regulation of mitotic cell cycle		protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	Colorectal(261;0.0847)					GTTCATGAATCGTTTCCTGGA	0.294													11	84					0	0	1	0	0
TM7SF3	51768	broad.mit.edu	37	12	27143469	27143469	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:27143469G>A	uc010sjl.1	-	6	1020	c.782C>T	c.(781-783)CCG>CTG	p.P261L		NM_016551	NP_057635	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3 precursor	261						integral to membrane|plasma membrane				upper_aerodigestive_tract(2)	2	Colorectal(261;0.0847)					ATTTAGAAACGGGTCCCAAAC	0.483													25	92					0	0	1	0	0
C12orf71	728858	broad.mit.edu	37	12	27235271	27235271	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:27235271G>A	uc001rhq.2	-	1	185	c.146C>T	c.(145-147)CCT>CTT	p.P49L		NM_001080406	NP_001073875	A8MTZ7	CL071_HUMAN	hypothetical protein LOC728858	49											0						GTGGATGGAAGGACCCTTGGA	0.542													8	34					0	0	1	0	0
ARNTL2	56938	broad.mit.edu	37	12	27553473	27553473	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:27553473G>A	uc001rht.1	+	10	944	c.926G>A	c.(925-927)AGA>AAA	p.R309K	ARNTL2_uc001rhw.2_Missense_Mutation_p.R272K|ARNTL2_uc010sjp.1_Missense_Mutation_p.R272K|ARNTL2_uc001rhu.1_Missense_Mutation_p.R295K|ARNTL2_uc009zji.1_Missense_Mutation_p.R275K|ARNTL2_uc001rhv.1_Missense_Mutation_p.R261K|uc001rhx.2_Intron	NM_020183	NP_064568	Q8WYA1	BMAL2_HUMAN	aryl hydrocarbon receptor nuclear	309					circadian rhythm|entrainment of circadian clock|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|skin(1)	2	Colorectal(261;0.0847)|Lung SC(9;0.184)					TTAGAGCACAGAAAATTCTAT	0.294													26	58					0	0	1	0	0
MRPS35	60488	broad.mit.edu	37	12	27872744	27872744	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:27872744C>T	uc001rih.2	+	4	373	c.325C>T	c.(325-327)CCC>TCC	p.P109S	MRPS35_uc001rii.2_Missense_Mutation_p.P109S	NM_021821	NP_068593	P82673	RT35_HUMAN	mitochondrial ribosomal protein S35 precursor	109					DNA damage response, detection of DNA damage	mitochondrial small ribosomal subunit					0	Lung SC(9;0.0873)					ATTTAAGATTCCCAATTTTCT	0.274													15	67					0	0	1	0	0
PTHLH	5744	broad.mit.edu	37	12	28116336	28116336	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:28116336G>A	uc001rik.2	-	3	772	c.469C>T	c.(469-471)CTA>TTA	p.L157L	PTHLH_uc001ril.2_Silent_p.L157L|PTHLH_uc001rim.2_Silent_p.L157L|PTHLH_uc001rin.2_Silent_p.L157L	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	157					activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					TCCCCTTCTAGCCCACTCCCA	0.572													24	55					0	0	1	0	0
PTHLH	5744	broad.mit.edu	37	12	28116375	28116375	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:28116375G>A	uc001rik.2	-	3	733	c.430C>T	c.(430-432)CGC>TGC	p.R144C	PTHLH_uc001ril.2_Missense_Mutation_p.R144C|PTHLH_uc001rim.2_Missense_Mutation_p.R144C|PTHLH_uc001rin.2_Missense_Mutation_p.R144C	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	144					activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					CAGGCAGAGCGAGTTCGCCGT	0.552													35	74					0	0	1	0	0
OVCH1	341350	broad.mit.edu	37	12	29650615	29650615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:29650615C>T	uc001rix.1	-	1	5	c.5G>A	c.(4-6)GGC>GAC	p.G2D		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	2					proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					GGCCAGCAGGCCCATAGCCTC	0.652													9	54					0	0	1	0	0
IPO8	10526	broad.mit.edu	37	12	30790020	30790020	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:30790020G>A	uc001rjd.2	-	22	2761	c.2591C>T	c.(2590-2592)TCA>TTA	p.S864L	IPO8_uc001rje.1_Missense_Mutation_p.S353L|IPO8_uc010sjt.1_Missense_Mutation_p.S659L	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	864					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GAAAAGAATTGAGGGAACAAT	0.438													47	92					0	0	1	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30876227	30876227	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:30876227G>A	uc001rji.1	-	11	2760	c.2009C>T	c.(2008-2010)TCC>TTC	p.S670F	CAPRIN2_uc001rjf.1_Missense_Mutation_p.S467F|CAPRIN2_uc001rjg.1_Missense_Mutation_p.S337F|CAPRIN2_uc001rjh.1_Missense_Mutation_p.S670F|CAPRIN2_uc001rjj.1_Missense_Mutation_p.S337F|CAPRIN2_uc001rjk.3_Missense_Mutation_p.S670F|CAPRIN2_uc001rjl.3_Missense_Mutation_p.S670F|CAPRIN2_uc001rjm.1_Missense_Mutation_p.S337F	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	670					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					ACTTTGACTGGACAGATTTTG	0.358													17	61					0	0	1	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30881934	30881934	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:30881934G>A	uc001rji.1	-	8	2181	c.1430C>T	c.(1429-1431)CCT>CTT	p.P477L	CAPRIN2_uc001rjf.1_Missense_Mutation_p.P274L|CAPRIN2_uc001rjg.1_Missense_Mutation_p.P144L|CAPRIN2_uc001rjh.1_Missense_Mutation_p.P477L|CAPRIN2_uc001rjj.1_Missense_Mutation_p.P144L|CAPRIN2_uc001rjk.3_Missense_Mutation_p.P477L|CAPRIN2_uc001rjl.3_Missense_Mutation_p.P477L|CAPRIN2_uc001rjm.1_Missense_Mutation_p.P144L|CAPRIN2_uc001rjn.1_Missense_Mutation_p.P144L	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	477					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					TTTGGATTTAGGTGTATCTTG	0.468													62	125					0	0	1	0	0
DDX11	1663	broad.mit.edu	37	12	31236828	31236828	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:31236828C>T	uc001rjt.1	+	3	477	c.226C>T	c.(226-228)CTC>TTC	p.L76F	DDX11_uc010sjw.1_Missense_Mutation_p.L76F|DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Missense_Mutation_p.L76F|DDX11_uc001rjs.1_Missense_Mutation_p.L76F|DDX11_uc001rju.1_5'UTR|DDX11_uc001rjv.1_Missense_Mutation_p.L76F|DDX11_uc001rjw.1_Missense_Mutation_p.L50F	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	76	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					AGAGGCACGACTCCTTGAAAC	0.522										Multiple Myeloma(12;0.14)			14	115					0	0	1	0	0
DDX11	1663	broad.mit.edu	37	12	31256287	31256287	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:31256287C>T	uc001rjt.1	+	25	2740	c.2489C>T	c.(2488-2490)TCT>TTT	p.S830F	DDX11_uc001rjr.1_Silent_p.L832L|DDX11_uc001rjs.1_Silent_p.L782L|DDX11_uc001rju.1_Silent_p.L504L|DDX11_uc001rjv.1_Missense_Mutation_p.S830F|DDX11_uc001rjw.1_Silent_p.L806L|DDX11_uc009zjn.1_Intron|DDX11_uc009zjo.1_Intron	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	830					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					AGGGAAGGCTCTGGTGGAGAA	0.637										Multiple Myeloma(12;0.14)			8	18					0	0	1	0	0
AMN1	196394	broad.mit.edu	37	12	31850770	31850770	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:31850770G>A	uc001rkq.3	-	4	604	c.438C>T	c.(436-438)ATC>ATT	p.I146I	AMN1_uc001rko.3_Silent_p.I128I|AMN1_uc010skc.1_Silent_p.I128I|AMN1_uc001rkp.3_Silent_p.I128I|AMN1_uc009zjs.2_RNA|AMN1_uc009zjt.1_RNA	NM_001113402	NP_001106873	Q8IY45	AMN1_HUMAN	antagonist of mitotic exit network 1 homolog	146											0	all_cancers(9;7.41e-12)|all_epithelial(9;1.18e-11)|all_lung(12;1.14e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.162)		OV - Ovarian serous cystadenocarcinoma(6;0.0014)			CACCTAAATCGATGATCTTTA	0.423													16	108					0	0	1	0	0
C12orf35	55196	broad.mit.edu	37	12	32137577	32137577	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:32137577C>T	uc001rks.2	+	4	4102	c.3688C>T	c.(3688-3690)CAA>TAA	p.Q1230*	C12orf35_uc001rkt.2_5'Flank	NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	1230										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			CACTGTTGTTCAATTTAAGAG	0.378													26	54					0	0	1	0	0
C12orf35	55196	broad.mit.edu	37	12	32137827	32137827	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:32137827C>T	uc001rks.2	+	4	4352	c.3938C>T	c.(3937-3939)TCT>TTT	p.S1313F	C12orf35_uc001rkt.2_5'Flank	NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	1313										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			ATGACAGCATCTTATGAACAA	0.348													16	77					0	0	1	0	0
C12orf35	55196	broad.mit.edu	37	12	32138307	32138307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:32138307C>T	uc001rks.2	+	4	4832	c.4418C>T	c.(4417-4419)CCA>CTA	p.P1473L	C12orf35_uc001rkt.2_5'Flank	NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	1473										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			AAAAACGTGCCATGTGATTCT	0.398													36	80					0	0	1	0	0
FGD4	121512	broad.mit.edu	37	12	32760940	32760940	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:32760940C>T	uc001rkz.2	+	8	1520	c.1043C>T	c.(1042-1044)CCT>CTT	p.P348L	FGD4_uc001rlc.2_Missense_Mutation_p.P433L|FGD4_uc001rky.2_Missense_Mutation_p.P100L|FGD4_uc001rla.2_Missense_Mutation_p.P4L|FGD4_uc010ske.1_Missense_Mutation_p.P460L|FGD4_uc001rlb.1_RNA	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	348	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					ATGCTAGAACCTGTTCAGCGG	0.393													61	131					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32955366	32955366	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:32955366G>A	uc001rlj.3	-	11	2385	c.2270C>T	c.(2269-2271)TCC>TTC	p.S757F	PKP2_uc001rlk.3_Missense_Mutation_p.S713F|PKP2_uc010skj.1_Missense_Mutation_p.S710F	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	757	ARM 6.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					AAGATTCCGGGACAGATTCCT	0.443													80	173					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32975413	32975413	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:32975413C>T	uc001rlj.3	-	9	2074	c.1959G>A	c.(1957-1959)AGG>AGA	p.R653R	PKP2_uc001rlk.3_Silent_p.R609R|PKP2_uc010skj.1_Silent_p.R609R	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	653					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CTTTTACTTTCCTGCTTCGAC	0.358													15	68					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32977057	32977057	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:32977057C>T	uc001rlj.3	-	8	1843	c.1728G>A	c.(1726-1728)ATG>ATA	p.M576I	PKP2_uc001rlk.3_Missense_Mutation_p.M532I|PKP2_uc010skj.1_Missense_Mutation_p.M532I	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	576	ARM 4.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CACATCTTCTCATCGCTTTTC	0.408													31	66					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32996178	32996178	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:32996178G>A	uc001rlj.3	-	6	1563	c.1448C>T	c.(1447-1449)ACT>ATT	p.T483I	PKP2_uc001rlk.3_Intron|PKP2_uc010skj.1_Intron	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	483					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					gcctcccaaagtgctgggatt	0.124													14	13					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	33003898	33003898	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:33003898G>A	uc001rlj.3	-	5	1295	c.1180C>T	c.(1180-1182)CTT>TTT	p.L394F	PKP2_uc001rlk.3_Missense_Mutation_p.L394F|PKP2_uc010skj.1_Missense_Mutation_p.L394F	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	394	ARM 2.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ATGCCACGAAGCTGGTTAACC	0.408													24	54					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	33030907	33030907	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:33030907C>T	uc001rlj.3	-	3	1022	c.907G>A	c.(907-909)GAA>AAA	p.E303K	PKP2_uc001rlk.3_Missense_Mutation_p.E303K|PKP2_uc010skj.1_Missense_Mutation_p.E303K	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	303					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GGCCCAGCTTCCCTCAGCGTG	0.667													5	53					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	33031217	33031217	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:33031217G>A	uc001rlj.3	-	3	712	c.597C>T	c.(595-597)ATC>ATT	p.I199I	PKP2_uc001rlk.3_Silent_p.I199I|PKP2_uc010skj.1_Silent_p.I199I	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	199					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TGACCCCCACGATCTCGGAAC	0.597													18	53					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	33031966	33031966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:33031966C>T	uc001rlj.3	-	2	339	c.224G>A	c.(223-225)GGA>GAA	p.G75E	PKP2_uc001rlk.3_Missense_Mutation_p.G75E|PKP2_uc010skj.1_Missense_Mutation_p.G75E	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	75					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GTGAAGATTTCCTGCAATCAA	0.333													5	42					0	0	1	0	0
ALG10B	144245	broad.mit.edu	37	12	38714175	38714175	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:38714175C>T	uc001rln.3	+	3	721	c.582C>T	c.(580-582)GTC>GTT	p.V194V	ALG10B_uc001rlo.3_Silent_p.V164V|ALG10B_uc010skk.1_Silent_p.V134V	NM_001013620	NP_001013642	Q5I7T1	AG10B_HUMAN	asparagine-linked glycosylation 10 homolog B	194	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|plasma membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|skin(1)	3	Esophageal squamous(101;0.187)	Lung NSC(34;0.204)|all_lung(34;0.235)				TCTGGGCTGTCTTCTGTGCAG	0.388													45	287					0	0	1	0	0
CPNE8	144402	broad.mit.edu	37	12	39087490	39087490	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:39087490G>A	uc001rls.1	-	15	1196	c.1112C>T	c.(1111-1113)CCA>CTA	p.P371L	CPNE8_uc001rlr.1_Missense_Mutation_p.P30L	NM_153634	NP_705898	Q86YQ8	CPNE8_HUMAN	copine VIII	371	VWFA.									pancreas(1)	1	Esophageal squamous(101;0.187)	Lung NSC(34;0.137)|Melanoma(24;0.152)|all_lung(34;0.157)				CCTTCCATCTGGAGGCAGTTT	0.348													19	133					0	0	1	0	0
KIF21A	55605	broad.mit.edu	37	12	39696876	39696876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:39696876G>A	uc001rly.2	-	36	4768	c.4622C>T	c.(4621-4623)CCT>CTT	p.P1541L	KIF21A_uc001rlv.2_Missense_Mutation_p.P486L|KIF21A_uc001rlw.2_Missense_Mutation_p.P811L|KIF21A_uc001rlx.2_Missense_Mutation_p.P1528L|KIF21A_uc001rlz.2_Missense_Mutation_p.P1488L|KIF21A_uc010skl.1_Missense_Mutation_p.P1504L|KIF21A_uc001rlt.2_Missense_Mutation_p.P161L|KIF21A_uc001rlu.2_Missense_Mutation_p.P161L	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	1541	WD 5.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				ATCATAATGAGGGGGTTCAAA	0.388													10	119					0	0	1	0	0
ABCD2	225	broad.mit.edu	37	12	39980049	39980049	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:39980049G>A	uc001rmb.2	-	7	2123	c.1697C>T	c.(1696-1698)TCA>TTA	p.S566L		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	566	ABC transporter.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						ATCATCCACTGAATCAGGGTA	0.388													30	46					0	0	1	0	0
C12orf40	283461	broad.mit.edu	37	12	40076552	40076552	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40076552G>A	uc001rmc.2	+	8	993	c.826G>A	c.(826-828)GAA>AAA	p.E276K	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	276										ovary(6)	6						AAATGGAAAGGAAGTTTCAAA	0.328													37	120					0	0	1	0	0
C12orf40	283461	broad.mit.edu	37	12	40076668	40076668	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40076668G>A	uc001rmc.2	+	8	1109	c.942G>A	c.(940-942)AGG>AGA	p.R314R	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	314								p.R314R(1)		ovary(6)	6						ATGAGCAAAGGATAAAGAAAA	0.328													18	56					0	0	1	0	0
C12orf40	283461	broad.mit.edu	37	12	40114658	40114658	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40114658G>A	uc001rmc.2	+	13	1731	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	522										ovary(6)	6						CAAAACCAAGGAAAAAATGAA	0.294													24	88					0	0	1	0	0
C12orf40	283461	broad.mit.edu	37	12	40114687	40114687	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40114687G>A	uc001rmc.2	+	13	1760	c.1593G>A	c.(1591-1593)AGG>AGA	p.R531R	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	531										ovary(6)	6						ATGTAGAAAGGATGGCAAAAC	0.318													25	78					0	0	1	0	0
SLC2A13	114134	broad.mit.edu	37	12	40345098	40345098	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40345098A>G	uc010skm.1	-	4	1046	c.995T>C	c.(994-996)CTA>CCA	p.L332P	SLC2A13_uc001rmf.2_Missense_Mutation_p.L332P	NM_052885	NP_443117	Q96QE2	MYCT_HUMAN	solute carrier family 2 (facilitated glucose	332	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	myo-inositol:hydrogen symporter activity			ovary(1)	1		Lung NSC(34;0.105)|all_lung(34;0.123)				GAACATTTGTAGGCCACAACC	0.373										HNSCC(50;0.14)			8	65					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40677882	40677882	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40677882C>T	uc001rmg.3	+	19	2568	c.2447C>T	c.(2446-2448)TCT>TTT	p.S816F	LRRK2_uc001rmh.1_Missense_Mutation_p.S438F	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	816					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GTTGAACCTTCTTGGCTTGGT	0.368													10	97					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40689277	40689277	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40689277C>T	uc001rmg.3	+	23	3048	c.2927C>T	c.(2926-2928)TCT>TTT	p.S976F	LRRK2_uc001rmh.1_Missense_Mutation_p.S598F|LRRK2_uc009zjw.2_5'UTR	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	976					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				AGCATTTCTTCTCTGGCTTCT	0.333													17	61					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40689437	40689437	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40689437G>A	uc001rmg.3	+	23	3208	c.3087G>A	c.(3085-3087)CAG>CAA	p.Q1029Q	LRRK2_uc001rmh.1_Silent_p.Q651Q|LRRK2_uc009zjw.2_5'UTR	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1029	LRR 2.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				TTCCACAACAGCTATGTGAAG	0.338													19	27					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40717020	40717020	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40717020C>T	uc001rmg.3	+	38	5689	c.5568C>T	c.(5566-5568)GCC>GCT	p.A1856A	LRRK2_uc009zjw.2_Silent_p.A694A|LRRK2_uc001rmi.2_Silent_p.A689A	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1856					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				CTCAGATTGCCCCTGACTTGA	0.338													25	69					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40728919	40728919	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:40728919C>T	uc001rmg.3	+	40	6029	c.5908C>T	c.(5908-5910)CTA>TTA	p.L1970L	LRRK2_uc009zjw.2_Silent_p.L808L|LRRK2_uc001rmi.2_Silent_p.L803L	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1970	Protein kinase.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				CACTAGAACCCTACAGCACAG	0.517													19	62					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41316121	41316121	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41316121C>T	uc001rmm.1	+	5	404	c.291C>T	c.(289-291)AAC>AAT	p.N97N	CNTN1_uc009zjy.1_Silent_p.N97N|CNTN1_uc001rmn.1_Silent_p.N86N|CNTN1_uc001rmo.2_Silent_p.N97N	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	97	Ig-like C2-type 1.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TAGGAGGAAACCTTGTTATCA	0.408													17	74					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41318429	41318429	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41318429C>T	uc001rmm.1	+	6	584	c.471C>T	c.(469-471)CTC>CTT	p.L157L	CNTN1_uc009zjy.1_Silent_p.L157L|CNTN1_uc001rmn.1_Silent_p.L146L|CNTN1_uc001rmo.2_Silent_p.L157L	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	157	Ig-like C2-type 2.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TGGTGCTTCTCTGTGACCCCC	0.378													13	46					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41323603	41323603	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41323603C>T	uc001rmm.1	+	7	615	c.502C>T	c.(502-504)CTT>TTT	p.L168F	CNTN1_uc009zjy.1_Missense_Mutation_p.L168F|CNTN1_uc001rmn.1_Missense_Mutation_p.L157F|CNTN1_uc001rmo.2_Missense_Mutation_p.L168F	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	168	Ig-like C2-type 2.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CCTAGATGATCTTAGCTATCG	0.338													8	49					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41327598	41327598	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41327598G>A	uc001rmm.1	+	9	1016	c.903G>A	c.(901-903)CAG>CAA	p.Q301Q	CNTN1_uc009zjy.1_Silent_p.Q301Q|CNTN1_uc001rmn.1_Silent_p.Q290Q|CNTN1_uc001rmo.2_Silent_p.Q301Q	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	301	Ig-like C2-type 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TCAATATTCAGCTAGAAGATG	0.408													19	68					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41333221	41333221	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41333221C>T	uc001rmm.1	+	12	1426	c.1313C>T	c.(1312-1314)CCT>CTT	p.P438L	CNTN1_uc009zjy.1_Missense_Mutation_p.P438L|CNTN1_uc001rmn.1_Missense_Mutation_p.P427L|CNTN1_uc001rmo.2_Missense_Mutation_p.P438L	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	438	Ig-like C2-type 5.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GAATGCAAACCTAAAGCTGCA	0.398													24	41					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41419023	41419023	+	Silent	SNP	G	A	A	rs145714777		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41419023G>A	uc001rmm.1	+	21	2708	c.2595G>A	c.(2593-2595)TCG>TCA	p.S865S	CNTN1_uc001rmn.1_Silent_p.S854S	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	865	Fibronectin type-III 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				AAGAGTACTCGGCCAGGCTCG	0.483													64	205					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41585335	41585335	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41585335C>T	uc010skn.1	+	2	195	c.127C>T	c.(127-129)CGA>TGA	p.R43*		NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	242	PDZ 1.						ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				TATAGGAGGTCGACCAAATCA	0.303													14	34					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41900269	41900269	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41900269G>A	uc010skn.1	+	4	326	c.258G>A	c.(256-258)AAG>AAA	p.K86K	PDZRN4_uc001rmq.3_Silent_p.K27K|PDZRN4_uc009zjz.2_Silent_p.K25K	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	285	PDZ 1.						ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				TCAATGGGAAGGATCTTTCAA	0.438													11	59					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41900474	41900474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41900474C>T	uc010skn.1	+	4	531	c.463C>T	c.(463-465)CCT>TCT	p.P155S	PDZRN4_uc001rmq.3_Missense_Mutation_p.P96S|PDZRN4_uc009zjz.2_Missense_Mutation_p.P94S|PDZRN4_uc001rmr.2_5'Flank	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	354							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				TCCACCTACCCCTCCAGTGCC	0.483													16	89					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41949551	41949551	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41949551C>T	uc010skn.1	+	7	825	c.757C>T	c.(757-759)CGG>TGG	p.R253W	PDZRN4_uc001rmq.3_Missense_Mutation_p.R194W|PDZRN4_uc009zjz.2_Missense_Mutation_p.R192W|PDZRN4_uc001rmr.2_Missense_Mutation_p.R79W	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	452	PDZ 2.						ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				AGAAGGGGATCGGATTTTGCA	0.408													19	106					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41961632	41961632	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41961632G>A	uc010skn.1	+	9	986	c.918G>A	c.(916-918)GAG>GAA	p.E306E	PDZRN4_uc001rmq.3_Silent_p.E247E|PDZRN4_uc009zjz.2_Silent_p.E245E|PDZRN4_uc001rmr.2_Silent_p.E132E	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	505							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				TCTTAGAGGAGTTAAACTTGG	0.398													17	77					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967191	41967191	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41967191C>T	uc010skn.1	+	10	2081	c.2013C>T	c.(2011-2013)CTC>CTT	p.L671L	PDZRN4_uc001rmq.3_Silent_p.L612L|PDZRN4_uc009zjz.2_Silent_p.L610L|PDZRN4_uc001rmr.2_Silent_p.L497L	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	870							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				AGAGTCAGCTCAGCTTGGTGA	0.468													49	95					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967301	41967301	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41967301G>A	uc010skn.1	+	10	2191	c.2123G>A	c.(2122-2124)CGA>CAA	p.R708Q	PDZRN4_uc001rmq.3_Missense_Mutation_p.R649Q|PDZRN4_uc009zjz.2_Missense_Mutation_p.R647Q|PDZRN4_uc001rmr.2_Missense_Mutation_p.R534Q	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	907							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				AGACCCGTGCGAGACCGAATC	0.517													8	104					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967584	41967584	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:41967584G>A	uc010skn.1	+	10	2474	c.2406G>A	c.(2404-2406)AAG>AAA	p.K802K	PDZRN4_uc001rmq.3_Silent_p.K743K|PDZRN4_uc009zjz.2_Silent_p.K741K|PDZRN4_uc001rmr.2_Silent_p.K628K	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	1001							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				AGAGAAACAAGAAAATTTTGG	0.458													10	36					0	0	1	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42853634	42853634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:42853634C>T	uc010skv.1	-	8	2760	c.2473G>A	c.(2473-2475)GGC>AGC	p.G825S	PRICKLE1_uc001rnl.2_Missense_Mutation_p.G825S|PRICKLE1_uc010skw.1_Missense_Mutation_p.G825S|PRICKLE1_uc001rnm.2_Missense_Mutation_p.G825S|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	825					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		CAATTTTTGCCCTTGTGTCCC	0.403													49	192					0	0	1	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42858582	42858582	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:42858582G>A	uc010skv.1	-	7	1541	c.1254C>T	c.(1252-1254)CTC>CTT	p.L418L	PRICKLE1_uc001rnl.2_Silent_p.L418L|PRICKLE1_uc010skw.1_Silent_p.L418L|PRICKLE1_uc001rnm.2_Silent_p.L418L	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	418					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		ACTTGAGGAGGAGCTGCGTCA	0.438													6	38					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43771241	43771241	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43771241G>A	uc010skx.1	-	32	4922	c.4922C>T	c.(4921-4923)CCT>CTT	p.P1641L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1641	TSP type-1 14.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CTGAGAGGAAGGCACCACAGG	0.408													5	35					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43777460	43777460	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43777460C>T	uc010skx.1	-	31	4698	c.4698G>A	c.(4696-4698)GTG>GTA	p.V1566V		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1566	TSP type-1 13.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CTATTTCATTCACTTGTCTGA	0.368													11	44					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43821218	43821218	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43821218C>T	uc010skx.1	-	27	4000	c.4000G>A	c.(4000-4002)GAA>AAA	p.E1334K	ADAMTS20_uc001rno.1_Missense_Mutation_p.E452K	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1334	TSP type-1 9.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TGTCCATTTTCATCCTGGCAG	0.488													18	40					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43822140	43822140	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43822140C>T	uc010skx.1	-	26	3849	c.3849G>A	c.(3847-3849)ACG>ACA	p.T1283T	ADAMTS20_uc001rno.1_Silent_p.T401T|ADAMTS20_uc001rnp.1_Silent_p.T437T	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1283						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ATGGCAAATTCGTGCTTAGAT	0.483													14	50					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826190	43826190	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43826190C>T	uc010skx.1	-	21	3013	c.3013G>A	c.(3013-3015)GAA>AAA	p.E1005K	ADAMTS20_uc001rno.1_Missense_Mutation_p.E159K|ADAMTS20_uc001rnp.1_Missense_Mutation_p.E159K	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1005	TSP type-1 4.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TCTTGGCATTCATTGTCAGCA	0.428													39	53					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826247	43826247	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43826247C>T	uc010skx.1	-	21	2956	c.2956G>A	c.(2956-2958)GAA>AAA	p.E986K	ADAMTS20_uc001rno.1_Missense_Mutation_p.E140K|ADAMTS20_uc001rnp.1_Missense_Mutation_p.E140K	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	986	TSP type-1 4.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CGAGACCTTTCCCCTCCTCCA	0.368													17	83					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43846452	43846452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43846452G>A	uc010skx.1	-	13	1807	c.1807C>T	c.(1807-1809)CGA>TGA	p.R603*		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	603	TSP type-1 1.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TTACATGATCGAAATTTCATC	0.398													9	17					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43846459	43846459	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43846459C>T	uc010skx.1	-	13	1800	c.1800G>A	c.(1798-1800)ATG>ATA	p.M600I		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	600	TSP type-1 1.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ATCGAAATTTCATCCTGCGGC	0.388													10	17					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43858479	43858479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43858479G>A	uc010skx.1	-	10	1424	c.1424C>T	c.(1423-1425)CCT>CTT	p.P475L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	475	Disintegrin.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AAGTTCTGAAGGCAGATTATA	0.383													11	70					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43944846	43944846	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43944846C>T	uc010skx.1	-	2	319	c.319G>A	c.(319-321)GTG>ATG	p.V107M		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	107						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CCCAAGTGCACCTCGGTGTAG	0.662													7	35					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43945658	43945658	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:43945658C>T	uc010skx.1	-	1	67	c.67G>A	c.(67-69)GAA>AAA	p.E23K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	23						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AAGTCAACTTCCCAAGACCTG	0.652													22	83					0	0	1	0	0
PUS7L	83448	broad.mit.edu	37	12	44148716	44148716	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:44148716G>A	uc001rnq.3	-	2	822	c.333C>T	c.(331-333)ATC>ATT	p.I111I	PUS7L_uc001rnr.3_Silent_p.I111I|PUS7L_uc001rns.3_Silent_p.I111I|PUS7L_uc009zkb.2_Intron	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.	111					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		TTCCATCAACGATAGTATCTT	0.348													26	63					0	0	1	0	0
TWF1	5756	broad.mit.edu	37	12	44191132	44191132	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:44191132G>A	uc001rob.2	-	8	884	c.856C>T	c.(856-858)CAT>TAT	p.H286Y	TWF1_uc001rnz.2_Missense_Mutation_p.H147Y|TWF1_uc001roa.2_Missense_Mutation_p.H279Y|TWF1_uc001roc.2_Missense_Mutation_p.H147Y	NM_002822	NP_002813	Q12792	TWF1_HUMAN	twinfilin 1	245	ADF-H 2.					actin cytoskeleton|cytoplasm	actin binding|protein tyrosine kinase activity			stomach(1)	1	all_cancers(12;0.00125)	Lung NSC(34;0.0804)|all_lung(34;0.181)		GBM - Glioblastoma multiforme(48;0.0474)		TCTCCTTCATGGGAATGTTTA	0.333													13	133					0	0	1	0	0
TMEM117	84216	broad.mit.edu	37	12	44770423	44770423	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:44770423C>T	uc001rod.2	+	7	880	c.814C>T	c.(814-816)CCT>TCT	p.P272S	TMEM117_uc001roe.2_Missense_Mutation_p.P168S|TMEM117_uc009zkc.2_Intron	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	272						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		TGTAAATCTCCCTGGTTTGCA	0.388													41	146					0	0	1	0	0
TMEM117	84216	broad.mit.edu	37	12	44782277	44782277	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:44782277C>T	uc001rod.2	+	8	1433	c.1367C>T	c.(1366-1368)TCA>TTA	p.S456L	TMEM117_uc001roe.2_Missense_Mutation_p.S352L|TMEM117_uc009zkc.2_3'UTR	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	456						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		ACCCAGGCTTCAGTAGAAGAC	0.443													60	95					0	0	1	0	0
NELL2	4753	broad.mit.edu	37	12	44913862	44913862	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:44913862C>T	uc001rog.2	-	19	2921	c.2326G>A	c.(2326-2328)GAA>AAA	p.E776K	NELL2_uc001rof.3_Missense_Mutation_p.E775K|NELL2_uc001roh.2_Missense_Mutation_p.E776K|NELL2_uc009zkd.2_Missense_Mutation_p.E728K|NELL2_uc010skz.1_Missense_Mutation_p.E826K|NELL2_uc010sla.1_Missense_Mutation_p.E799K	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	776	VWFC 5.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		ACATTCATTTCGTCCAGGCAA	0.498													15	60					0	0	1	0	0
NELL2	4753	broad.mit.edu	37	12	45059290	45059290	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45059290C>T	uc001rog.2	-	13	2016	c.1421G>A	c.(1420-1422)AGA>AAA	p.R474K	NELL2_uc001rof.3_Missense_Mutation_p.R473K|NELL2_uc001roh.2_Missense_Mutation_p.R474K|NELL2_uc009zkd.2_Missense_Mutation_p.R473K|NELL2_uc010skz.1_Missense_Mutation_p.R524K|NELL2_uc010sla.1_Missense_Mutation_p.R497K|NELL2_uc001roi.1_Missense_Mutation_p.R474K|NELL2_uc010slb.1_Missense_Mutation_p.R473K|NELL2_uc001roj.2_Missense_Mutation_p.R474K	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	474	EGF-like 2; calcium-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		ATCATCAATTCTGATGTATCC	0.348													25	38					0	0	1	0	0
NELL2	4753	broad.mit.edu	37	12	45108503	45108503	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45108503C>T	uc001rog.2	-	10	1611	c.1016G>A	c.(1015-1017)CGA>CAA	p.R339Q	NELL2_uc001rof.3_Missense_Mutation_p.R338Q|NELL2_uc001roh.2_Missense_Mutation_p.R339Q|NELL2_uc009zkd.2_Missense_Mutation_p.R338Q|NELL2_uc010skz.1_Missense_Mutation_p.R389Q|NELL2_uc010sla.1_Missense_Mutation_p.R362Q|NELL2_uc001roi.1_Missense_Mutation_p.R339Q|NELL2_uc010slb.1_Missense_Mutation_p.R338Q|NELL2_uc001roj.2_Missense_Mutation_p.R339Q	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	339	VWFC 2.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		AAAGTAGGTTCGTCCTTGAAA	0.343													19	59					0	0	1	0	0
DBX2	440097	broad.mit.edu	37	12	45410157	45410157	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45410157G>A	uc001rok.1	-	4	1104	c.932C>T	c.(931-933)CCC>CTC	p.P311L		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	311						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		TGCTTCTGGGGGTGGTGCCCC	0.483													27	57					0	0	1	0	0
DBX2	440097	broad.mit.edu	37	12	45410212	45410212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45410212C>T	uc001rok.1	-	4	1049	c.877G>A	c.(877-879)GAG>AAG	p.E293K		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	293						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		GGAGAATTCTCCCTCCATCTT	0.498													34	77					0	0	1	0	0
DBX2	440097	broad.mit.edu	37	12	45410266	45410266	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45410266G>A	uc001rok.1	-	4	995	c.823C>T	c.(823-825)CCA>TCA	p.P275S		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	275						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		GAAGGACATGGAGAAGGGAAA	0.493													46	104					0	0	1	0	0
DBX2	440097	broad.mit.edu	37	12	45410347	45410347	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45410347C>T	uc001rok.1	-	4	914	c.742G>A	c.(742-744)GAA>AAA	p.E248K		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	248						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		GAAAGCACTTCCTTTTCTTTG	0.418													54	124					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457608	45457608	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45457608C>T	uc001rol.2	-	1		c.1587G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						GTCACTGGTTCTGGATTGGGC	0.502													18	59					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457833	45457833	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45457833G>A	uc001rol.2	-	1		c.1362C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						GCTTTGTTTAGGCGAAAGGTC	0.458													38	130					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457945	45457945	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45457945G>A	uc001rol.2	-	1		c.1250C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TCACTCTGAGGAATTTCTCTT	0.428													8	93					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458358	45458358	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45458358G>A	uc001rol.2	-	1		c.837C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CTGCTGTTCAGGGTGGGGTCA	0.517													11	24					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458559	45458559	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45458559G>A	uc001rol.2	-	1		c.636C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						AGGTCCAGAGGGACCATCAAC	0.473													15	38					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458979	45458979	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45458979C>T	uc001rol.2	-	1		c.216G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CCTTGTATTTCCCCAGCTCAT	0.433													12	28					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45459056	45459056	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45459056C>T	uc001rol.2	-	1		c.139G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						AATTGGAGTTCGTTTCCTTCC	0.443													13	26					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45459065	45459065	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45459065C>T	uc001rol.2	-	1		c.130G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TCGTTTCCTTCCTTGAGAATC	0.468													14	27					0	0	1	0	0
ANO6	196527	broad.mit.edu	37	12	45742408	45742408	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:45742408C>T	uc001roo.2	+	6	1076	c.741C>T	c.(739-741)CTC>CTT	p.L247L	ANO6_uc010sld.1_Silent_p.L247L|ANO6_uc010sle.1_Silent_p.L247L|ANO6_uc010slf.1_Silent_p.L268L|ANO6_uc010slg.1_Silent_p.L229L	NM_001025356	NP_001020527	Q4KMQ2	ANO6_HUMAN	anoctamin 6 isoform a	247	Cytoplasmic (Potential).				activation of blood coagulation via clotting cascade|phosphatidylserine exposure on blood platelet	chloride channel complex|plasma membrane	chloride channel activity			ovary(1)|kidney(1)	2						CTTTCCCACTCCATGATGTAA	0.403													13	72					0	0	1	0	0
ARID2	196528	broad.mit.edu	37	12	46230641	46230641	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:46230641C>T	uc001ros.1	+	8	890	c.890C>T	c.(889-891)TCC>TTC	p.S297F	ARID2_uc001ror.2_Missense_Mutation_p.S297F|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_5'Flank|ARID2_uc001rot.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	297					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AGAAATCTTTCCTTTGAGGAG	0.398													45	85					0	0	1	0	0
ARID2	196528	broad.mit.edu	37	12	46243472	46243472	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:46243472C>T	uc001ros.1	+	14	1825	c.1825C>T	c.(1825-1827)CAG>TAG	p.Q609*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q609*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q65*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q236*|ARID2_uc001rou.1_5'Flank	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	609					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		ACTTCCCATTCAGATGTACTA	0.438													73	190					0	0	1	0	0
ARID2	196528	broad.mit.edu	37	12	46243823	46243823	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:46243823C>T	uc001ros.1	+	15	1917	c.1917C>T	c.(1915-1917)ATC>ATT	p.I639I	ARID2_uc001ror.2_Silent_p.I639I|ARID2_uc009zkg.1_Silent_p.I95I|ARID2_uc009zkh.1_Silent_p.I266I|ARID2_uc001rou.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	639					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TTTCAGGAATCCCTCATGGAT	0.338													36	54					0	0	1	0	0
ARID2	196528	broad.mit.edu	37	12	46246393	46246393	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:46246393C>T	uc001ros.1	+	15	4487	c.4487C>T	c.(4486-4488)TCT>TTT	p.S1496F	ARID2_uc001ror.2_Missense_Mutation_p.S1496F|ARID2_uc009zkg.1_Missense_Mutation_p.S952F|ARID2_uc009zkh.1_Missense_Mutation_p.S1123F|ARID2_uc001rou.1_Missense_Mutation_p.S830F	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1496					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GTATCCCATTCTCCTGCCCTA	0.468													31	112					0	0	1	0	0
SLC38A1	81539	broad.mit.edu	37	12	46598182	46598182	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:46598182G>A	uc001rpa.2	-	11	982	c.724C>T	c.(724-726)CAA>TAA	p.Q242*	SLC38A1_uc001rpb.2_Nonsense_Mutation_p.Q242*|SLC38A1_uc001rpc.2_Nonsense_Mutation_p.Q242*|SLC38A1_uc001rpd.2_Nonsense_Mutation_p.Q242*|SLC38A1_uc001rpe.2_Nonsense_Mutation_p.Q242*|SLC38A1_uc010slh.1_Nonsense_Mutation_p.Q215*|SLC38A1_uc009zkj.1_Nonsense_Mutation_p.Q242*	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	242	Extracellular (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			CAGGGAATTTGAAATTTCTTG	0.323													14	136					0	0	1	0	0
SLC38A1	81539	broad.mit.edu	37	12	46633526	46633526	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:46633526C>T	uc001rpa.2	-	3	316	c.58G>A	c.(58-60)GAG>AAG	p.E20K	SLC38A1_uc001rpb.2_Missense_Mutation_p.E20K|SLC38A1_uc001rpc.2_Missense_Mutation_p.E20K|SLC38A1_uc001rpd.2_Missense_Mutation_p.E20K|SLC38A1_uc001rpe.2_Missense_Mutation_p.E20K|SLC38A1_uc010slh.1_Intron|SLC38A1_uc009zkj.1_Missense_Mutation_p.E20K	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	20	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			TTATCATCCTCGGGCACTGTC	0.353													29	104					0	0	1	0	0
SLC38A4	55089	broad.mit.edu	37	12	47173598	47173598	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:47173598C>T	uc001rpi.2	-	9	1022	c.623G>A	c.(622-624)GGA>GAA	p.G208E	SLC38A4_uc001rpj.2_Missense_Mutation_p.G208E|SLC38A4_uc009zkl.2_Missense_Mutation_p.G208E	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	208	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					AAGAATAATTCCAACAGACAC	0.303													17	48					0	0	1	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471412	47471412	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:47471412C>T	uc001rpm.2	-	3	2029	c.1374G>A	c.(1372-1374)CGG>CGA	p.R458R	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Silent_p.R458R|AMIGO2_uc001rpl.2_Silent_p.R458R	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	458	Cytoplasmic (Potential).				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CACCTGCCTTCCGTTCATCAG	0.512													17	67					0	0	1	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471756	47471756	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:47471756G>A	uc001rpm.2	-	3	1685	c.1030C>T	c.(1030-1032)CAC>TAC	p.H344Y	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.H344Y|AMIGO2_uc001rpl.2_Missense_Mutation_p.H344Y	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	344	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CTTCCATTGTGAAACACGTAA	0.423													72	119					0	0	1	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471878	47471878	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:47471878C>T	uc001rpm.2	-	3	1563	c.908G>A	c.(907-909)GGG>GAG	p.G303E	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.G303E|AMIGO2_uc001rpl.2_Missense_Mutation_p.G303E	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	303	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CAGTCTTTCCCCGACCTGAGC	0.483													18	153					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47628897	47628897	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:47628897C>T	uc001rpn.2	+	4	782	c.51C>T	c.(49-51)TTC>TTT	p.F17F	FAM113B_uc010slj.1_Intron|FAM113B_uc001rpq.2_Silent_p.F17F	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	17							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					ACAATAAGTTCGTGGTCATCC	0.592													31	23					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47628967	47628967	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:47628967C>T	uc001rpn.2	+	4	852	c.121C>T	c.(121-123)CGC>TGC	p.R41C	FAM113B_uc010slj.1_Intron|FAM113B_uc001rpq.2_Missense_Mutation_p.R41C	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	41							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					GCAGAAGGACCGCCTGCTCAC	0.597													5	37					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47629474	47629474	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:47629474G>A	uc001rpn.2	+	4	1359	c.628G>A	c.(628-630)GAT>AAT	p.D210N	FAM113B_uc010slj.1_Missense_Mutation_p.D90N|FAM113B_uc001rpq.2_Missense_Mutation_p.D210N	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	210							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					ACATAACTTCGATGTACTGGA	0.587													9	15					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47630061	47630061	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:47630061C>T	uc001rpn.2	+	4	1946	c.1215C>T	c.(1213-1215)CCC>CCT	p.P405P	FAM113B_uc001rpq.2_Silent_p.P405P	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	405	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					GGTATCGTCCCCGTGGCCCCT	0.592													21	41					0	0	1	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48133933	48133933	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48133933C>T	uc009zkp.2	-	22	2678	c.2238G>A	c.(2236-2238)GAG>GAA	p.E746E	uc001rpv.2_RNA|RAPGEF3_uc001rpw.2_Silent_p.E81E|RAPGEF3_uc001rpx.2_Silent_p.E203E|RAPGEF3_uc010sln.1_Silent_p.E243E|RAPGEF3_uc001rpy.2_RNA|RAPGEF3_uc009zkq.2_Silent_p.E746E|RAPGEF3_uc001rpz.3_Silent_p.E788E	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	746					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		CCAGCAGCCTCTCGAGGGCGG	0.657													3	15					0	0	1	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48134543	48134543	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48134543C>T	uc009zkp.2	-	20	2427	c.1987G>A	c.(1987-1989)GAG>AAG	p.E663K	uc001rpv.2_RNA|RAPGEF3_uc001rpw.2_5'UTR|RAPGEF3_uc001rpx.2_Missense_Mutation_p.E120K|RAPGEF3_uc010sln.1_Missense_Mutation_p.E178K|RAPGEF3_uc001rpy.2_Intron|RAPGEF3_uc009zkq.2_Missense_Mutation_p.E663K|RAPGEF3_uc001rpz.3_Missense_Mutation_p.E705K	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	663					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		ATGAAGCGCTCCAGGTTGGCG	0.657													18	57					0	0	1	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48142633	48142634	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48142633_48142634GG>AA	uc009zkp.2	-	10	1436_1437	c.996_997CC>TT	c.(994-999)GGCCCT>GGTTCT	p.P333S	RAPGEF3_uc010sln.1_5'Flank|RAPGEF3_uc001rpy.2_5'Flank|RAPGEF3_uc009zkq.2_Missense_Mutation_p.P333S|RAPGEF3_uc001rpz.3_Missense_Mutation_p.P375S|RAPGEF3_uc001rqa.2_5'Flank|RAPGEF3_uc009zkr.2_RNA|RAPGEF3_uc009zks.2_Missense_Mutation_p.P387S	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	333					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		GGTCGGGAAGGGCCGGCGCCCT	0.599													41	107					0	0	1	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48145556	48145556	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48145556G>A	uc009zkp.2	-	3	644	c.204C>T	c.(202-204)GCC>GCT	p.A68A	RAPGEF3_uc009zkq.2_Silent_p.A68A|RAPGEF3_uc001rpz.3_Silent_p.A110A|RAPGEF3_uc009zkr.2_Intron|RAPGEF3_uc009zks.2_Silent_p.A122A|RAPGEF3_uc001rqb.3_Silent_p.A110A	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	68					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		TTGGGCAGGTGGCCAGCAGAT	0.627													12	43					0	0	1	0	0
HDAC7	51564	broad.mit.edu	37	12	48181838	48181838	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48181838G>A	uc010slo.1	-	20	2540	c.2345C>T	c.(2344-2346)GCT>GTT	p.A782V	HDAC7_uc009zku.2_RNA|HDAC7_uc001rqe.2_Missense_Mutation_p.A216V|HDAC7_uc001rqj.3_Missense_Mutation_p.A745V|HDAC7_uc001rqk.3_Missense_Mutation_p.A765V|HDAC7_uc010slp.1_5'UTR	NM_015401	NP_056216	Q8WUI4	HDAC7_HUMAN	histone deacetylase 7 isoform a	743	Histone deacetylase.				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		CTCATCCACAGCCCCACTCCC	0.478													11	44					0	0	1	0	0
HDAC7	51564	broad.mit.edu	37	12	48190922	48190922	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48190922G>A	uc009zkv.1	-	5	679	c.464C>T	c.(463-465)TCT>TTT	p.S155F	HDAC7_uc010slo.1_Missense_Mutation_p.S194F|HDAC7_uc001rqj.3_Missense_Mutation_p.S194F|HDAC7_uc001rqk.3_Missense_Mutation_p.S177F			Q8WUI4	HDAC7_HUMAN	Synthetic construct DNA, clone: pF1KB0470, Homo sapiens HDAC7 gene for histone deacetylase 7, without stop codon, in Flexi system.	155	Transcription repression 1 (By similarity).				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		GTTGGGCTCAGAGACTGCAGG	0.592													40	87					0	0	1	0	0
VDR	7421	broad.mit.edu	37	12	48240510	48240510	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48240510G>A	uc001rqm.2	-	9	1119	c.837C>T	c.(835-837)TTC>TTT	p.F279F	VDR_uc001rql.2_Silent_p.F329F|VDR_uc001rqn.2_Silent_p.F279F|VDR_uc010slq.1_Silent_p.F247F	NM_001017535	NP_001017535	P11473	VDR_HUMAN	vitamin D (1,25-dihydroxyvitamin D3) receptor	279	Ligand-binding.				decidualization|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin D 24-hydroxylase activity|regulation of calcidiol 1-monooxygenase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid X receptor binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|vitamin D3 receptor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Acute lymphoblastic leukemia(13;0.109)|all_hematologic(14;0.214)		GBM - Glioblastoma multiforme(48;0.17)	Calcidiol(DB00146)|Calcipotriol(DB02300)|Calcitriol(DB00136)|Dihydrotachysterol(DB01070)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	CGTCCATGGTGAAGGACTCAT	0.552													27	64					0	0	1	0	0
VDR	7421	broad.mit.edu	37	12	48240513	48240513	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48240513G>A	uc001rqm.2	-	9	1116	c.834C>T	c.(832-834)TCC>TCT	p.S278S	VDR_uc001rql.2_Silent_p.S328S|VDR_uc001rqn.2_Silent_p.S278S|VDR_uc010slq.1_Silent_p.S246S	NM_001017535	NP_001017535	P11473	VDR_HUMAN	vitamin D (1,25-dihydroxyvitamin D3) receptor	278	Ligand-binding.|Vitamin D3 binding.				decidualization|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin D 24-hydroxylase activity|regulation of calcidiol 1-monooxygenase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid X receptor binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|vitamin D3 receptor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Acute lymphoblastic leukemia(13;0.109)|all_hematologic(14;0.214)		GBM - Glioblastoma multiforme(48;0.17)	Calcidiol(DB00146)|Calcipotriol(DB02300)|Calcitriol(DB00136)|Dihydrotachysterol(DB01070)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	CCATGGTGAAGGACTCATTGG	0.552													27	67					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48372493	48372493	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48372493G>A	uc001rqu.2	-	42	2963	c.2782C>T	c.(2782-2784)CCC>TCC	p.P928S	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.P859S	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	928	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GCACCTTTGGGACCATCTTTT	0.627													12	40					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48389692	48389692	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48389692C>T	uc001rqu.2	-	9	801	c.620G>A	c.(619-621)GGA>GAA	p.G207E	COL2A1_uc001rqv.2_Missense_Mutation_p.G138E	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	207	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	TCCTCGAGGTCCCATGGGGCC	0.542													31	62					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48391447	48391447	+	Missense_Mutation	SNP	G	A	A	rs1050861		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48391447G>A	uc001rqu.2	-	7	654	c.473C>T	c.(472-474)CCT>CTT	p.P158L	COL2A1_uc001rqv.2_Missense_Mutation_p.P89L	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	158					axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	aggATTTCCAGGGGTCCCAGG	0.408													20	64					0	0	1	0	0
SENP1	29843	broad.mit.edu	37	12	48457594	48457594	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48457594G>A	uc001rqx.2	-	13	1752	c.1306C>T	c.(1306-1308)CGT>TGT	p.R436C	SENP1_uc001rqw.2_Missense_Mutation_p.R436C|SENP1_uc001rqy.2_Missense_Mutation_p.R237C|SENP1_uc001rqz.2_Missense_Mutation_p.R237C|SENP1_uc009zkx.2_Missense_Mutation_p.R436C	NM_014554	NP_055369	Q9P0U3	SENP1_HUMAN	sentrin/SUMO-specific protease 1	436					activation of caspase activity|induction of apoptosis by extracellular signals|protein desumoylation|proteolysis	cytoplasm|nucleus	endopeptidase activity|SUMO-specific protease activity			pancreas(2)|lung(1)	3		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)				TTCCCATTACGAAATACATTC	0.383													10	37					0	0	1	0	0
SENP1	29843	broad.mit.edu	37	12	48477508	48477508	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48477508G>A	uc001rqx.2	-	6	864	c.418C>T	c.(418-420)CAC>TAC	p.H140Y	SENP1_uc001rqw.2_Missense_Mutation_p.H140Y|SENP1_uc001rqy.2_5'UTR|SENP1_uc001rqz.2_5'UTR|SENP1_uc009zkx.2_Missense_Mutation_p.H140Y	NM_014554	NP_055369	Q9P0U3	SENP1_HUMAN	sentrin/SUMO-specific protease 1	140	Ser-rich.				activation of caspase activity|induction of apoptosis by extracellular signals|protein desumoylation|proteolysis	cytoplasm|nucleus	endopeptidase activity|SUMO-specific protease activity			pancreas(2)|lung(1)	3		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)				ACATGGCAGTGATGGTTTGAC	0.358													32	70					0	0	1	0	0
H1FNT	341567	broad.mit.edu	37	12	48723446	48723446	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48723446G>A	uc001rrm.2	+	1	684	c.372G>A	c.(370-372)AAG>AAA	p.K124K		NM_181788	NP_861453	Q75WM6	H1FNT_HUMAN	H1 histone family, member N, testis-specific	124					chromosome condensation|multicellular organismal development|sperm chromatin condensation|spermatid nucleus elongation	nuclear chromatin	ATP binding|DNA binding			pancreas(1)	1						GGGTCTGGAAGGTTCCCAAGC	0.746													11	20					0	0	1	0	0
H1FNT	341567	broad.mit.edu	37	12	48723492	48723492	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48723492G>A	uc001rrm.2	+	1	730	c.418G>A	c.(418-420)GGC>AGC	p.G140S		NM_181788	NP_861453	Q75WM6	H1FNT_HUMAN	H1 histone family, member N, testis-specific	140	Arg-rich.				chromosome condensation|multicellular organismal development|sperm chromatin condensation|spermatid nucleus elongation	nuclear chromatin	ATP binding|DNA binding			pancreas(1)	1						GCAAGAGGAGGGCACGCGCGC	0.726													5	16					0	0	1	0	0
H1FNT	341567	broad.mit.edu	37	12	48723505	48723505	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48723505C>T	uc001rrm.2	+	1	743	c.431C>T	c.(430-432)CCC>CTC	p.P144L		NM_181788	NP_861453	Q75WM6	H1FNT_HUMAN	H1 histone family, member N, testis-specific	144	Arg-rich.				chromosome condensation|multicellular organismal development|sperm chromatin condensation|spermatid nucleus elongation	nuclear chromatin	ATP binding|DNA binding			pancreas(1)	1						ACGCGCGCTCCCTGGAGGACC	0.721													5	12					0	0	1	0	0
C12orf54	121273	broad.mit.edu	37	12	48884612	48884612	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48884612G>A	uc001rrr.2	+	5	243	c.186G>A	c.(184-186)CGG>CGA	p.R62R	C12orf54_uc009zky.1_RNA	NM_152319	NP_689532	Q6X4T0	CL054_HUMAN	hypothetical protein LOC121273	62											0						AAGATGCTCGGATTCGAGGTA	0.433													51	105					0	0	1	0	0
OR8S1	341568	broad.mit.edu	37	12	48921756	48921756	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48921756G>A	uc010slu.1	+	2	950	c.950G>A	c.(949-951)TGG>TAG	p.W317*		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	317	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CAGGCCAGATGGAAGAGACCA	0.577													14	50					0	0	1	0	0
LALBA	3906	broad.mit.edu	37	12	48963801	48963801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:48963801C>T	uc001rrt.2	-	1	29	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_002289	NP_002280	P00709	LALBA_HUMAN	lactalbumin, alpha- precursor	1					cell-cell signaling|defense response to bacterium|induction of apoptosis|lactose biosynthetic process|signal transduction	extracellular space	calcium ion binding|lactose synthase activity				0						CAAAGAACCTCATTTTGGCTA	0.483													41	81					0	0	1	0	0
CCNT1	904	broad.mit.edu	37	12	49087283	49087283	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49087283G>A	uc001rse.1	-	9	2037	c.1714C>T	c.(1714-1716)CGT>TGT	p.R572C	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Missense_Mutation_p.R287C	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	572	Ser-rich.				cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						CCCCTTTTACGAGTAGAACTG	0.443													46	121					0	0	1	0	0
CCNT1	904	broad.mit.edu	37	12	49087963	49087963	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49087963G>A	uc001rse.1	-	9	1357	c.1034C>T	c.(1033-1035)CCT>CTT	p.P345L	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Missense_Mutation_p.P60L	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	345					cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						ACCCTGAGTAGGTTCTAGTTT	0.473													32	76					0	0	1	0	0
ADCY6	112	broad.mit.edu	37	12	49166090	49166090	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49166090G>A	uc001rsh.3	-	17	3435	c.2775C>T	c.(2773-2775)CTC>CTT	p.L925L	ADCY6_uc001rsj.3_Silent_p.L925L|ADCY6_uc001rsi.3_Silent_p.L872L|ADCY6_uc010slw.1_Silent_p.L156L	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	925	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						GTAGTTTCCAGAGGAAGTCTA	0.567													12	79					0	0	1	0	0
ADCY6	112	broad.mit.edu	37	12	49166321	49166321	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49166321G>A	uc001rsh.3	-	16	3287	c.2627C>T	c.(2626-2628)TCT>TTT	p.S876F	ADCY6_uc001rsj.3_Missense_Mutation_p.S876F|ADCY6_uc001rsi.3_Missense_Mutation_p.S823F|ADCY6_uc010slw.1_Missense_Mutation_p.S107F	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	876					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						CTCATTGGAAGAAGCCCTGGT	0.488													8	42					0	0	1	0	0
ADCY6	112	broad.mit.edu	37	12	49176534	49176534	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49176534G>A	uc001rsh.3	-	1	1344	c.684C>T	c.(682-684)CTC>CTT	p.L228L	ADCY6_uc001rsj.3_Silent_p.L228L|ADCY6_uc001rsi.3_Silent_p.L228L	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	228	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						GGTCTGCTGCGAGAGCGCCCC	0.667													3	11					0	0	1	0	0
DDX23	9416	broad.mit.edu	37	12	49228277	49228277	+	Silent	SNP	G	A	A	rs143841455		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49228277G>A	uc001rsm.2	-	12	1477	c.1386C>T	c.(1384-1386)ATC>ATT	p.I462I		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	462	Helicase ATP-binding.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						CTGACTCTTCGATCCTGTGGT	0.527													34	53					0	0	1	0	0
WNT10B	7480	broad.mit.edu	37	12	49359997	49359997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49359997G>A	uc001rss.2	-	5	1397	c.1051C>T	c.(1051-1053)CGT>TGT	p.R351C	WNT10B_uc001rst.2_3'UTR	NM_003394	NP_003385	O00744	WN10B_HUMAN	wingless-type MMTV integration site family,	351					axis specification|bone trabecula formation|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|chondrocyte differentiation|female gonad development|hemopoietic stem cell proliferation|midbrain-hindbrain boundary development|myoblast cell differentiation involved in skeletal muscle regeneration|negative regulation of epithelial cell proliferation|negative regulation of fat cell differentiation|neuron differentiation|positive regulation of anagen|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cell proliferation|positive regulation of epithelial cell differentiation|positive regulation of osteoblast differentiation|protein stabilization|regulation of skeletal muscle tissue development|skeletal muscle fiber development|smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			skin(4)|lung(3)	7						TTGTGCCCACGGCCACAGCAC	0.627													5	59					0	0	1	0	0
WNT1	7471	broad.mit.edu	37	12	49373260	49373260	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49373260G>A	uc001rsu.2	+	2	312	c.114G>A	c.(112-114)GTG>GTA	p.V38V		NM_005430	NP_005421	P04628	WNT1_HUMAN	wingless-type MMTV integration site family,	38					brain segmentation|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|central nervous system morphogenesis|cerebellum formation|dermatome development|diencephalon development|embryonic axis specification|forebrain anterior/posterior pattern formation|fourth ventricle development|hemopoietic stem cell proliferation|hepatocyte differentiation|inner ear morphogenesis|mesoderm morphogenesis|midbrain development|midbrain-hindbrain boundary maturation during brain development|negative regulation of cell-cell adhesion|negative regulation of cell-substrate adhesion|negative regulation of DNA damage checkpoint|negative regulation of fat cell differentiation|neuron fate determination|positive regulation of fibroblast proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of lamellipodium assembly|positive regulation of Notch signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to wounding|signal transduction in response to DNA damage|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled-2 binding|transcription regulatory region DNA binding			kidney(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.244)		GGGGTATTGTGAACGTAGCCT	0.567													44	101					0	0	1	0	0
DDN	23109	broad.mit.edu	37	12	49390836	49390836	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49390836G>A	uc001rsv.1	-	2	1841	c.1823C>T	c.(1822-1824)GCC>GTC	p.A608V	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	608	Interaction with CD2AP and NPHS1 (By similarity).					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						CAGGGCCCCGGCGTAGGGCCC	0.602													4	11					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49425842	49425842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49425842G>A	uc001rta.3	-	39	12646	c.12646C>T	c.(12646-12648)CCT>TCT	p.P4216S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4216	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TGCTGCTGAGGACTTAAGTGC	0.622			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			7	62					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49427388	49427388	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49427388G>A	uc001rta.3	-	39	11100	c.11100C>T	c.(11098-11100)TTC>TTT	p.F3700F		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	3700	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGTTGCCAGGGAAGAAGCCCC	0.582			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			28	99					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49428229	49428229	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49428229G>A	uc001rta.3	-	37	10471	c.10471C>T	c.(10471-10473)CGT>TGT	p.R3491C		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	3491	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGGTTGGGACGAGGCTGGGAG	0.587			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			9	12					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49433990	49433990	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49433990G>A	uc001rta.3	-	31	7563	c.7563C>T	c.(7561-7563)TCC>TCT	p.S2521S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2521	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CCGTCCCAGGGGACCGGACAA	0.672			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			5	41					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49444380	49444380	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49444380G>A	uc001rta.3	-	11	2991	c.2991C>T	c.(2989-2991)CCC>CCT	p.P997P		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	997	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGATCATAGGGGGGACAGGCT	0.617			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			10	31					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49445109	49445109	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49445109G>A	uc001rta.3	-	10	2357	c.2357C>T	c.(2356-2358)CCA>CTA	p.P786L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	786	Pro-rich.			Missing (in Ref. 1; AAC51734).	chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGACAAGTGTGGCTCCTCAGG	0.657			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			17	32					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49445619	49445619	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49445619G>A	uc001rta.3	-	10	1847	c.1847C>T	c.(1846-1848)CCC>CTC	p.P616L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	616	15 X 5 AA repeats of S/P-P-P-E/P-E/A.|Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TGGGGAAAGGGGAGACTCCTC	0.602			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			17	70					0	0	1	0	0
TUBA1B	10376	broad.mit.edu	37	12	49523142	49523142	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49523142G>A	uc001rtm.2	-	3	479	c.258C>T	c.(256-258)CTC>CTT	p.L86L	TUBA1B_uc001rto.2_Intron|TUBA1B_uc001rtk.2_Silent_p.L51L|TUBA1B_uc001rtl.2_Silent_p.L51L|TUBA1B_uc001rtn.2_Intron	NM_006082	NP_006073	P68363	TBA1B_HUMAN	tubulin, alpha, ubiquitous	86					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding				0						CAGGGTGGAAGAGCTGGCGGT	0.557													51	106					0	0	1	0	0
TUBA1A	7846	broad.mit.edu	37	12	49579395	49579395	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49579395G>A	uc009zlf.2	-	4	1026	c.754C>T	c.(754-756)CTG>TTG	p.L252L	TUBA1B_uc001rto.2_Intron|TUBA1A_uc001rtp.2_Silent_p.L252L|TUBA1A_uc001rtq.2_Silent_p.L99L|TUBA1A_uc001rtr.2_Silent_p.L99L|TUBA1A_uc009zlg.2_Silent_p.L99L	NM_006009	NP_006000	Q71U36	TBA1A_HUMAN	tubulin, alpha 1a	252					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|structural molecule activity				0						AATTCTGTCAGGTCAACATTC	0.488													27	72					0	0	1	0	0
TROAP	10024	broad.mit.edu	37	12	49724711	49724711	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:49724711C>T	uc001rtx.3	+	13	2250	c.2083C>T	c.(2083-2085)CCA>TCA	p.P695S	TROAP_uc009zlh.2_Missense_Mutation_p.P695S|TROAP_uc001rty.2_Missense_Mutation_p.P374S	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	695					cell adhesion	cytoplasm				ovary(1)	1						TTTGAGACCCCCAGCAGGCCA	0.607													44	163					0	0	1	0	0
FAIM2	23017	broad.mit.edu	37	12	50283911	50283911	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50283911C>A	uc001rvj.1	-	8	697	c.552G>T	c.(550-552)GGG>GGT	p.G184G	FAIM2_uc001rvi.1_Silent_p.G138G|FAIM2_uc001rvk.1_RNA	NM_012306	NP_036438	Q9BWQ8	FAIM2_HUMAN	Fas apoptotic inhibitory molecule 2	184	Helical; (Potential).				anti-apoptosis|apoptosis	cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|ovary(1)|skin(1)	3						TGGACAGCATCCCAGTGAGGT	0.607													8	62					3.09899e-07	3.10556e-07	1	1	0
FAIM2	23017	broad.mit.edu	37	12	50295006	50295006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50295006C>T	uc001rvj.1	-	2	263	c.118G>A	c.(118-120)GAA>AAA	p.E40K	FAIM2_uc001rvi.1_5'UTR|FAIM2_uc001rvk.1_RNA	NM_012306	NP_036438	Q9BWQ8	FAIM2_HUMAN	Fas apoptotic inhibitory molecule 2	40					anti-apoptosis|apoptosis	cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|ovary(1)|skin(1)	3						GAGGTGGCTTCCTCATAGGAG	0.667													12	45					0	0	1	0	0
FAIM2	23017	broad.mit.edu	37	12	50295082	50295082	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50295082C>T	uc001rvj.1	-	2	187	c.42G>A	c.(40-42)GGG>GGA	p.G14G	FAIM2_uc001rvi.1_5'UTR|FAIM2_uc001rvk.1_RNA	NM_012306	NP_036438	Q9BWQ8	FAIM2_HUMAN	Fas apoptotic inhibitory molecule 2	14					anti-apoptosis|apoptosis	cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|ovary(1)|skin(1)	3						GCCCCTCGGTCCCAGGGGCCT	0.607													15	60					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50344655	50344655	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50344655C>T	uc001rvn.2	+	1	132	c.42C>T	c.(40-42)TTC>TTT	p.F14F		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	14	Cytoplasmic (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						GGGCTGTGTTCGCAGAGTTCC	0.642													24	40					0	0	1	0	0
AQP6	363	broad.mit.edu	37	12	50366976	50366977	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50366976_50366977GG>AA	uc001rvr.1	+	1	357_358	c.20_21GG>AA	c.(19-21)GGG>GAA	p.G7E	AQP6_uc001rvp.1_Intron|AQP6_uc001rvq.1_RNA	NM_001652	NP_001643	Q13520	AQP6_HUMAN	aquaporin 6	7	Cytoplasmic (Potential).				excretion|odontogenesis	integral to plasma membrane|transport vesicle membrane	anion channel activity|water channel activity				0						GTGGAGCCAGGGGGACGTGGCT	0.594													8	43					0	0	1	0	0
AQP6	363	broad.mit.edu	37	12	50367226	50367226	+	Silent	SNP	C	T	T	rs143481476		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50367226C>T	uc001rvr.1	+	1	607	c.270C>T	c.(268-270)CTC>CTT	p.L90L	AQP6_uc001rvp.1_Intron|AQP6_uc001rvq.1_RNA	NM_001652	NP_001643	Q13520	AQP6_HUMAN	aquaporin 6	90	Cytoplasmic (Potential).				excretion|odontogenesis	integral to plasma membrane|transport vesicle membrane	anion channel activity|water channel activity				0						TGGCCTTCCTCGTAGGCTCCC	0.667													22	52					0	0	1	0	0
GPD1	2819	broad.mit.edu	37	12	50497861	50497861	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50497861G>A	uc001rvz.2	+	1	61	c.28G>A	c.(28-30)GGC>AGC	p.G10S	GPD1_uc010smp.1_Missense_Mutation_p.G10S|GPD1_uc001rwa.2_Missense_Mutation_p.G10S	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	10	NAD.				glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	CTGCATTGTAGGCTCCGGGAA	0.587													26	95					0	0	1	0	0
GPD1	2819	broad.mit.edu	37	12	50500108	50500108	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50500108C>T	uc001rvz.2	+	4	431	c.398C>T	c.(397-399)TCG>TTG	p.S133L	GPD1_uc001rwa.2_Missense_Mutation_p.S110L	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	133					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	AAGCTCATCTCGGAAGTGATT	0.617													13	18					0	0	1	0	0
GPD1	2819	broad.mit.edu	37	12	50501529	50501529	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50501529C>T	uc001rvz.2	+	6	825	c.792C>T	c.(790-792)ACC>ACT	p.T264T	GPD1_uc001rwa.2_Silent_p.T241T	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	264					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	TGATCACTACCTGCTATGGAG	0.592													17	171					0	0	1	0	0
LASS5	91012	broad.mit.edu	37	12	50561058	50561058	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:50561058G>A	uc001rwd.3	-	1	40	c.23C>T	c.(22-24)CCC>CTC	p.P8L	LASS5_uc001rwe.3_5'UTR|LASS5_uc001rwf.3_RNA|LASS5_uc010smq.1_5'UTR	NM_147190	NP_671723	Q8N5B7	CERS5_HUMAN	LAG1 homolog, ceramide synthase 5	8	Lumenal (Potential).				ceramide biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity				0						CAAGCTTAGGGGTCCCTGCGC	0.617													14	28					0	0	1	0	0
DIP2B	57609	broad.mit.edu	37	12	51100335	51100335	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51100335C>T	uc001rwv.2	+	21	2577	c.2421C>T	c.(2419-2421)TTC>TTT	p.F807F	DIP2B_uc009zlt.2_Silent_p.F237F	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	807						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						GTTTGGTGTTCGTGGTTGGGA	0.363													38	95					0	0	1	0	0
DIP2B	57609	broad.mit.edu	37	12	51122405	51122405	+	Silent	SNP	C	T	T	rs61745502	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51122405C>T	uc001rwv.2	+	30	3741	c.3585C>T	c.(3583-3585)ATC>ATT	p.I1195I	DIP2B_uc009zlt.2_Silent_p.I625I	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	1195						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						CTCGGCAGATCGCCATCTGCC	0.527													7	61					0	0	1	0	0
LETMD1	25875	broad.mit.edu	37	12	51442255	51442255	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51442255C>T	uc001rxm.2	+	1	172	c.116C>T	c.(115-117)GCC>GTC	p.A39V	LETMD1_uc010smz.1_Missense_Mutation_p.A39V|LETMD1_uc010sna.1_Missense_Mutation_p.A39V|LETMD1_uc001rxl.2_Intron|LETMD1_uc009zlv.2_RNA|LETMD1_uc001rxs.2_Missense_Mutation_p.A39V|LETMD1_uc009zlw.2_Missense_Mutation_p.A39V|LETMD1_uc001rxn.2_5'UTR|LETMD1_uc001rxo.2_RNA|LETMD1_uc001rxp.2_Missense_Mutation_p.A39V|LETMD1_uc001rxq.2_Missense_Mutation_p.A39V|LETMD1_uc001rxr.2_RNA|LETMD1_uc001rxt.2_5'Flank	NM_015416	NP_056231	Q6P1Q0	LTMD1_HUMAN	LETM1 domain containing 1 isoform 1	39	Cytoplasmic (Potential).|Required and sufficient for mitochondrial import.					integral to membrane|mitochondrial outer membrane	protein binding			central_nervous_system(2)	2						GCTTGGGGGGCCCCTCGGTGA	0.577											OREG0021818	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	77					0	0	1	0	0
TFCP2	7024	broad.mit.edu	37	12	51504689	51504689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51504689G>A	uc001rxw.2	-	5	994	c.535C>T	c.(535-537)CCT>TCT	p.P179S	TFCP2_uc001rxv.1_Missense_Mutation_p.P179S|TFCP2_uc009zlx.1_Missense_Mutation_p.P179S|TFCP2_uc001rxx.2_Missense_Mutation_p.P179S|TFCP2_uc009zly.1_Missense_Mutation_p.P81S	NM_005653	NP_005644	Q12800	TFCP2_HUMAN	transcription factor CP2	179	DNA-binding.				regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTCTTTGCAGGGTCCCACAGG	0.403													41	138					0	0	1	0	0
TFCP2	7024	broad.mit.edu	37	12	51512411	51512411	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51512411G>A	uc001rxw.2	-	2	726	c.267C>T	c.(265-267)CTC>CTT	p.L89L	TFCP2_uc001rxv.1_Silent_p.L89L|TFCP2_uc009zlx.1_Silent_p.L89L|TFCP2_uc001rxx.2_Silent_p.L89L|TFCP2_uc009zly.1_5'UTR	NM_005653	NP_005644	Q12800	TFCP2_HUMAN	transcription factor CP2	89					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AACCTTGATTGAGATACGTTA	0.313													11	114					0	0	1	0	0
BIN2	51411	broad.mit.edu	37	12	51685950	51685950	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51685950C>T	uc001ryg.2	-	10	992	c.940G>A	c.(940-942)GAG>AAG	p.E314K	BIN2_uc009zlz.2_Missense_Mutation_p.E282K|BIN2_uc001ryh.2_Missense_Mutation_p.E190K|BIN2_uc010sng.1_Missense_Mutation_p.E288K	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	314	Potential.					cytoplasm	protein binding			ovary(1)	1						TCTAAGAGCTCCTTGATCTCA	0.517													27	66					0	0	1	0	0
BIN2	51411	broad.mit.edu	37	12	51693415	51693415	+	Silent	SNP	C	T	T	rs150740618	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51693415C>T	uc001ryg.2	-	6	544	c.492G>A	c.(490-492)AAG>AAA	p.K164K	BIN2_uc009zlz.2_Silent_p.K132K|BIN2_uc001ryh.2_Silent_p.K40K|BIN2_uc010sng.1_Silent_p.K138K	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	164	BAR.					cytoplasm	protein binding			ovary(1)	1						CCTCATCTTTCTTCTTGGCAT	0.517													73	142					0	0	1	0	0
BIN2	51411	broad.mit.edu	37	12	51693482	51693482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51693482C>T	uc001ryg.2	-	6	477	c.425G>A	c.(424-426)CGG>CAG	p.R142Q	BIN2_uc009zlz.2_Missense_Mutation_p.R110Q|BIN2_uc001ryh.2_Missense_Mutation_p.R18Q|BIN2_uc010sng.1_Missense_Mutation_p.R116Q	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	142	BAR.					cytoplasm	protein binding			ovary(1)	1						TTTCCGACCCCGCTTGGCAAT	0.498													55	88					0	0	1	0	0
BIN2	51411	broad.mit.edu	37	12	51696508	51696508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51696508C>T	uc001ryg.2	-	4	326	c.274G>A	c.(274-276)GAG>AAG	p.E92K	BIN2_uc009zlz.2_Missense_Mutation_p.E92K|BIN2_uc001ryh.2_5'UTR|BIN2_uc010sng.1_Missense_Mutation_p.E66K	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	92	BAR.					cytoplasm	protein binding	p.E92K(1)		ovary(1)	1						CCGTCCCACTCGCTGCTGTAG	0.473													69	182					0	0	1	0	0
BIN2	51411	broad.mit.edu	37	12	51696896	51696896	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51696896C>T	uc001ryg.2	-	3	244	c.192G>A	c.(190-192)CTG>CTA	p.L64L	BIN2_uc009zlz.2_Silent_p.L64L|BIN2_uc001ryh.2_5'UTR|BIN2_uc010sng.1_Silent_p.L38L	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	64	BAR.					cytoplasm	protein binding			ovary(1)	1						GGAAGTTCTTCAGGTCCTTGT	0.438													22	104					0	0	1	0	0
CELA1	1990	broad.mit.edu	37	12	51736476	51736476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51736476G>A	uc001ryi.1	-	4	250	c.209C>T	c.(208-210)ACT>ATT	p.T70I		NM_001971	NP_001962	Q9UNI1	CELA1_HUMAN	chymotrypsin-like elastase family, member 1	70	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			breast(1)	1						CACGCGGAAAGTCTTCTGGCT	0.493													11	37					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51752006	51752006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51752006C>T	uc001ryk.2	-	8	1633	c.1408G>A	c.(1408-1410)GAA>AAA	p.E470K	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.E470K|GALNT6_uc001ryj.1_Missense_Mutation_p.E35K	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	470	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						TGCAGTTGTTCCCTCAGCTGC	0.458													48	111					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51752037	51752037	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51752037G>A	uc001ryk.2	-	8	1602	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Silent_p.F459F|GALNT6_uc001ryj.1_Silent_p.F24F	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	459	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						AAATGTCACCGAAGGATTTCT	0.373													44	117					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51753026	51753026	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51753026C>T	uc001ryk.2	-	7	1483	c.1258G>A	c.(1258-1260)GGC>AGC	p.G420S	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.G420S|GALNT6_uc001ryj.1_5'UTR	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	420	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						ACACTAGTGCCCTTGGGGAAG	0.547													87	221					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51757907	51757907	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51757907G>A	uc001ryk.2	-	5	1272	c.1047C>T	c.(1045-1047)ATC>ATT	p.I349I	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Silent_p.I349I	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	349	Catalytic subdomain B.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GTCCTTACTTGATGGGGTAGG	0.522													32	55					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51758030	51758030	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51758030G>A	uc001ryk.2	-	5	1149	c.924C>T	c.(922-924)TTC>TTT	p.F308F	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Silent_p.F308F	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	308	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						CGGGCTTGGCGAACTCAAAAG	0.582													17	38					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51759245	51759245	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51759245C>T	uc001ryk.2	-	4	1008	c.783G>A	c.(781-783)CAG>CAA	p.Q261Q	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Silent_p.Q261Q	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	261	Catalytic subdomain A.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GCACCTCCGCCTGTGCCACGC	0.672													22	52					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51851266	51851266	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51851266C>T	uc001rys.1	+	6	884	c.706C>T	c.(706-708)CGC>TGC	p.R236C	SLC4A8_uc010sni.1_Missense_Mutation_p.R183C|SLC4A8_uc001rym.2_Missense_Mutation_p.R183C|SLC4A8_uc001ryn.2_Missense_Mutation_p.R183C|SLC4A8_uc001ryo.2_Missense_Mutation_p.R183C|SLC4A8_uc001ryp.1_Missense_Mutation_p.R183C|SLC4A8_uc010snj.1_Missense_Mutation_p.R263C|SLC4A8_uc001ryq.3_Missense_Mutation_p.R236C|SLC4A8_uc001ryr.2_Missense_Mutation_p.R236C|SLC4A8_uc010snk.1_Missense_Mutation_p.R183C	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	236	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		TCCCATTGTTCGCTCCTTTGC	0.393													24	85					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51852422	51852422	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51852422G>A	uc001rys.1	+	7	1021	c.843G>A	c.(841-843)GTG>GTA	p.V281V	SLC4A8_uc010sni.1_Silent_p.V228V|SLC4A8_uc001rym.2_Silent_p.V228V|SLC4A8_uc001ryn.2_Silent_p.V228V|SLC4A8_uc001ryo.2_Silent_p.V228V|SLC4A8_uc001ryp.1_Silent_p.V228V|SLC4A8_uc010snj.1_Silent_p.V308V|SLC4A8_uc001ryq.3_Silent_p.V281V|SLC4A8_uc001ryr.2_Silent_p.V281V|SLC4A8_uc010snk.1_Silent_p.V228V	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	281	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		ATAGTCCTGTGGATTTAAGCA	0.408													15	81					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51853778	51853778	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51853778C>T	uc001rys.1	+	8	1077	c.899C>T	c.(898-900)GCC>GTC	p.A300V	SLC4A8_uc010sni.1_Missense_Mutation_p.A247V|SLC4A8_uc001rym.2_Missense_Mutation_p.A247V|SLC4A8_uc001ryn.2_Missense_Mutation_p.A247V|SLC4A8_uc001ryo.2_Missense_Mutation_p.A247V|SLC4A8_uc001ryp.1_Missense_Mutation_p.A247V|SLC4A8_uc010snj.1_Missense_Mutation_p.A327V|SLC4A8_uc001ryq.3_Missense_Mutation_p.A300V|SLC4A8_uc001ryr.2_Missense_Mutation_p.A300V|SLC4A8_uc010snk.1_Missense_Mutation_p.A247V	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	300	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		GGGGCCGAGGCCTCCAATGTC	0.463													24	210					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51863539	51863539	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51863539G>A	uc001rys.1	+	12	1669	c.1491G>A	c.(1489-1491)GGG>GGA	p.G497G	SLC4A8_uc010sni.1_Silent_p.G444G|SLC4A8_uc001rym.2_Silent_p.G444G|SLC4A8_uc001ryn.2_Silent_p.G444G|SLC4A8_uc001ryo.2_Silent_p.G444G|SLC4A8_uc010snj.1_Silent_p.G524G|SLC4A8_uc001ryq.3_Silent_p.G497G|SLC4A8_uc001ryr.2_Silent_p.G497G|SLC4A8_uc010snk.1_Silent_p.G444G	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	497	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		TCACCTTTGGGGGACTGCTTG	0.502													15	104					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51864298	51864298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51864298C>T	uc001rys.1	+	13	1825	c.1647C>T	c.(1645-1647)TTC>TTT	p.F549F	SLC4A8_uc010sni.1_Silent_p.F496F|SLC4A8_uc001rym.2_Silent_p.F496F|SLC4A8_uc001ryn.2_Silent_p.F496F|SLC4A8_uc001ryo.2_Silent_p.F496F|SLC4A8_uc010snj.1_Silent_p.F576F|SLC4A8_uc001ryq.3_Silent_p.F549F|SLC4A8_uc001ryr.2_Silent_p.F549F|SLC4A8_uc010snk.1_Silent_p.F496F	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	549	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		AGATTTTGTTCAAATTCTGCA	0.418													30	129					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51887531	51887531	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:51887531G>A	uc001rys.1	+	20	2922	c.2744G>A	c.(2743-2745)GGA>GAA	p.G915E	SLC4A8_uc001rym.2_Missense_Mutation_p.G862E|SLC4A8_uc001ryn.2_Missense_Mutation_p.G862E|SLC4A8_uc001ryo.2_Missense_Mutation_p.G862E|SLC4A8_uc010snj.1_Missense_Mutation_p.G942E|SLC4A8_uc001ryr.2_Missense_Mutation_p.G915E	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	915	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		CTTTACATGGGAGTTTCTTCA	0.443													33	169					0	0	1	0	0
SCN8A	6334	broad.mit.edu	37	12	52159647	52159647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52159647G>A	uc001ryw.2	+	16	2915	c.2737G>A	c.(2737-2739)GAA>AAA	p.E913K	SCN8A_uc010snl.1_Missense_Mutation_p.E778K|SCN8A_uc001ryy.2_Missense_Mutation_p.E778K	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	913	II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	CCAGGACTGTGAACTCCCTCG	0.488													66	115					0	0	1	0	0
SCN8A	6334	broad.mit.edu	37	12	52174539	52174539	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52174539G>A	uc001ryw.2	+	21	4104	c.3926G>A	c.(3925-3927)CGA>CAA	p.R1309Q	SCN8A_uc010snl.1_Intron|SCN8A_uc001rza.1_Intron	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1309	III.|Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	GCCTTATCACGATTTGAAGGG	0.388													10	26					0	0	1	0	0
SCN8A	6334	broad.mit.edu	37	12	52200089	52200089	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52200089G>A	uc001ryw.2	+	27	4997	c.4819G>A	c.(4819-4821)GAG>AAG	p.E1607K		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1607	IV.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	AGATATAATTGAGAAATACTT	0.433													62	160					0	0	1	0	0
SCN8A	6334	broad.mit.edu	37	12	52200481	52200481	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52200481G>A	uc001ryw.2	+	27	5389	c.5211G>A	c.(5209-5211)GGG>GGA	p.G1737G		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1737	IV.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	GAGATTGTGGGAACCCCTCAG	0.512													25	52					0	0	1	0	0
ANKRD33	341405	broad.mit.edu	37	12	52284387	52284387	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52284387G>A	uc001rzf.3	+	5	861	c.282G>A	c.(280-282)GTG>GTA	p.V94V	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Silent_p.V219V|ANKRD33_uc001rze.2_Silent_p.V115V|ANKRD33_uc001rzg.3_Silent_p.V21V|ANKRD33_uc001rzi.3_Silent_p.V94V	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	94											0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		TGACAGCAGTGGACCCTGTTC	0.617													8	16					0	0	1	0	0
ANKRD33	341405	broad.mit.edu	37	12	52284411	52284411	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52284411C>T	uc001rzf.3	+	5	885	c.306C>T	c.(304-306)GCC>GCT	p.A102A	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Silent_p.A227A|ANKRD33_uc001rze.2_Silent_p.A123A|ANKRD33_uc001rzg.3_Silent_p.A29A|ANKRD33_uc001rzi.3_Silent_p.A102A	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	102	ANK 3.										0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		GCAAGACGGCCCTGGAATGGG	0.622													8	27					0	0	1	0	0
ANKRD33	341405	broad.mit.edu	37	12	52284537	52284537	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52284537C>T	uc001rzf.3	+	5	1011	c.432C>T	c.(430-432)CTC>CTT	p.L144L	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Silent_p.L269L|ANKRD33_uc001rze.2_Silent_p.L165L|ANKRD33_uc001rzg.3_Silent_p.L71L|ANKRD33_uc001rzi.3_Silent_p.L144L	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	144											0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		TGTCCGGGCTCGTggcccagg	0.567													6	18					0	0	1	0	0
ANKRD33	341405	broad.mit.edu	37	12	52284752	52284753	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52284752_52284753CC>TT	uc001rzf.3	+	5	1226_1227	c.647_648CC>TT	c.(646-648)TCC>TTT	p.S216F	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Missense_Mutation_p.S341F|ANKRD33_uc001rze.2_Missense_Mutation_p.S237F|ANKRD33_uc001rzg.3_Missense_Mutation_p.S143F|ANKRD33_uc001rzi.3_Missense_Mutation_p.S216F	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	216											0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		CGAAGCAAGTCCGTGCCAGAGC	0.658													10	27					0	0	1	0	0
ACVRL1	94	broad.mit.edu	37	12	52306893	52306893	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52306893G>A	uc001rzj.2	+	3	355	c.72G>A	c.(70-72)GTG>GTA	p.V24V	ACVRL1_uc001rzk.2_Silent_p.V24V|ACVRL1_uc010snm.1_Intron	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	24	Extracellular (Potential).				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	GAGACCCTGTGAAGCCGTCTC	0.657									Hereditary_Hemorrhagic_Telangiectasia				7	9					0	0	1	0	0
ACVRL1	94	broad.mit.edu	37	12	52308303	52308303	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52308303G>A	uc001rzj.2	+	6	989	c.706G>A	c.(706-708)GAA>AAA	p.E236K	ACVRL1_uc001rzk.2_Missense_Mutation_p.E236K|ACVRL1_uc010snm.1_Missense_Mutation_p.E62K	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	236	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	CTCGAGGGATGAACAGTCCTG	0.592									Hereditary_Hemorrhagic_Telangiectasia				13	25					0	0	1	0	0
ACVR1B	91	broad.mit.edu	37	12	52370317	52370317	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52370317C>T	uc001rzn.2	+	3	580	c.538C>T	c.(538-540)CAG>TAG	p.Q180*	ACVR1B_uc001rzl.2_Nonsense_Mutation_p.Q180*|ACVR1B_uc001rzm.2_Nonsense_Mutation_p.Q180*|ACVR1B_uc010snn.1_Nonsense_Mutation_p.Q180*	NM_004302	NP_004293	P36896	ACV1B_HUMAN	activin A receptor, type IB isoform a precursor	180	Cytoplasmic (Potential).|GS.				G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding			pancreas(4)|breast(2)|ovary(1)|lung(1)|kidney(1)	9				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	CAAGACGCTCCAGGATCTTGT	0.502													16	113					0	0	1	0	0
NR4A1	3164	broad.mit.edu	37	12	52451238	52451238	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52451238C>T	uc001rzs.2	+	7	1778	c.1464C>T	c.(1462-1464)GCC>GCT	p.A488A	NR4A1_uc010sno.1_Silent_p.A501A|NR4A1_uc001rzt.2_Silent_p.A488A|NR4A1_uc009zmc.2_Missense_Mutation_p.P102L	NM_002135	NP_002126	P22736	NR4A1_HUMAN	nuclear receptor subfamily 4, group A, member 1	488					nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(357;0.0967)		GTATCCTGGCCTTCTCAAGGT	0.612													12	56					0	0	1	0	0
NR4A1	3164	broad.mit.edu	37	12	52451249	52451249	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52451249C>T	uc001rzs.2	+	7	1789	c.1475C>T	c.(1474-1476)TCC>TTC	p.S492F	NR4A1_uc010sno.1_Missense_Mutation_p.S505F|NR4A1_uc001rzt.2_Missense_Mutation_p.S492F|NR4A1_uc009zmc.2_Missense_Mutation_p.P106S	NM_002135	NP_002126	P22736	NR4A1_HUMAN	nuclear receptor subfamily 4, group A, member 1	492					nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(357;0.0967)		TTCTCAAGGTCCCTGCACAGC	0.602													10	58					0	0	1	0	0
KRT80	144501	broad.mit.edu	37	12	52565264	52565264	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52565264T>G	uc001rzx.2	-	9	1375	c.1277A>C	c.(1276-1278)AAG>ACG	p.K426T	KRT80_uc001rzw.2_Missense_Mutation_p.K461T|KRT80_uc001rzy.2_3'UTR	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	426	Tail.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		GCTGCCCTTCTTCTTTCGGGA	0.577													21	52					0	0	1	0	0
KRT80	144501	broad.mit.edu	37	12	52567414	52567414	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52567414C>T	uc001rzx.2	-	5	899	c.801G>A	c.(799-801)CTG>CTA	p.L267L	KRT80_uc001rzw.2_Silent_p.L302L|KRT80_uc001rzy.2_Silent_p.L267L	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	267	Rod.|Coil 2.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		CGGCCTCCTCCAGGCTGCGAG	0.662													28	77					0	0	1	0	0
KRT80	144501	broad.mit.edu	37	12	52579321	52579321	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52579321G>A	uc001rzx.2	-	2	449	c.351C>T	c.(349-351)TTC>TTT	p.F117F	KRT80_uc001rzw.2_Silent_p.F54F|KRT80_uc001rzy.2_Silent_p.F117F	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	117	Coil 1A.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		GGCCCTGCAGGAAGCTCCAGC	0.637													7	43					0	0	1	0	0
KRT7	3855	broad.mit.edu	37	12	52636807	52636807	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52636807C>T	uc001saa.1	+	6	997	c.870C>T	c.(868-870)CTC>CTT	p.L290L	KRT7_uc009zmf.1_Silent_p.L290L	NM_005556	NP_005547	P08729	K2C7_HUMAN	keratin 7	290	Rod.|Coil 2.				cytoskeleton organization|DNA replication|interphase|interspecies interaction between organisms|regulation of translation	Golgi apparatus|keratin filament|nucleus	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.105)		TTGAGACCCTCCAGGCCCAGG	0.587													18	76					0	0	1	0	0
KRT81	3887	broad.mit.edu	37	12	52685159	52685159	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52685159G>A	uc001sab.2	-	1	141	c.91C>T	c.(91-93)CCC>TCC	p.P31S	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_Intron	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	31	Head.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCACGGTAGGGGGCGGCGGTG	0.716													5	14					0	0	1	0	0
KRT86	3892	broad.mit.edu	37	12	52698736	52698736	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52698736C>T	uc010snq.1	+	5	793	c.660C>T	c.(658-660)CTC>CTT	p.L220L	KRT86_uc009zmg.2_Silent_p.L220L|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Silent_p.L220L	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	220	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCGCCTACCTCCGCAAATCAG	0.597													46	187					0	0	1	0	0
KRT86	3892	broad.mit.edu	37	12	52699043	52699043	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52699043C>T	uc010snq.1	+	6	888	c.755C>T	c.(754-756)TCC>TTC	p.S252F	KRT86_uc009zmg.2_Missense_Mutation_p.S252F|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Missense_Mutation_p.S252F	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	252	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		GTTCTCCAGTCCCACATCTCA	0.552													21	130					0	0	1	0	0
KRT86	3892	broad.mit.edu	37	12	52699168	52699168	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52699168G>A	uc010snq.1	+	6	1013	c.880G>A	c.(880-882)GAG>AAG	p.E294K	KRT86_uc009zmg.2_Missense_Mutation_p.E294K|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Missense_Mutation_p.E294K	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	294	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		GGCTGAGGCCGAGTCCTGGTA	0.537													25	85					0	0	1	0	0
KRT86	3892	broad.mit.edu	37	12	52699483	52699483	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52699483G>A	uc010snq.1	+	7	1070	c.937G>A	c.(937-939)GAG>AAG	p.E313K	KRT86_uc009zmg.2_Missense_Mutation_p.E313K|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Missense_Mutation_p.E313K	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	313	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		CAGGCACGGGGAGACCCTGCG	0.597													7	81					0	0	1	0	0
KRT86	3892	broad.mit.edu	37	12	52699504	52699504	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52699504G>A	uc010snq.1	+	7	1091	c.958G>A	c.(958-960)GAG>AAG	p.E320K	KRT86_uc009zmg.2_Missense_Mutation_p.E320K|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Missense_Mutation_p.E320K	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	320	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCGCACCAAGGAGGAGATCAA	0.597													8	87					0	0	1	0	0
KRT83	3889	broad.mit.edu	37	12	52710324	52710324	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52710324G>A	uc001saf.2	-	6	1032	c.969C>T	c.(967-969)ACC>ACT	p.T323T		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	323	Rod.|Coil 2.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TCTCCTCCTTGGTGCGGCGCA	0.597													7	80					0	0	1	0	0
KRT83	3889	broad.mit.edu	37	12	52714852	52714852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52714852C>T	uc001saf.2	-	1	331	c.268G>A	c.(268-270)GAG>AAG	p.E90K		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	90	Head.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		AGGAGGCTCTCGTTGACCGAC	0.667													32	108					0	0	1	0	0
KRT85	3891	broad.mit.edu	37	12	52754805	52754805	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52754805G>A	uc001sag.2	-	9	1476	c.1356C>T	c.(1354-1356)GTC>GTT	p.V452V		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	452	Tail.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CCCCACAGGAGACTCCACCAC	0.652													4	10					0	0	1	0	0
KRT85	3891	broad.mit.edu	37	12	52756698	52756698	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52756698G>A	uc001sag.2	-	6	1137	c.1017C>T	c.(1015-1017)ATC>ATT	p.I339I		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	339	Rod.|Coil 2.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TCAGCTCGTTGATCTCCTCCT	0.582													27	61					0	0	1	0	0
KRT84	3890	broad.mit.edu	37	12	52775175	52775175	+	Silent	SNP	C	T	T	rs114877532	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52775175C>T	uc001sah.1	-	5	1095	c.1047G>A	c.(1045-1047)CGG>CGA	p.R349R		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	349	Rod.|Coil 2.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CAGCATCAGCCCGGCTGCGCC	0.577													38	193					0	0	1	0	0
KRT84	3890	broad.mit.edu	37	12	52775247	52775247	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52775247G>A	uc001sah.1	-	5	1023	c.975C>T	c.(973-975)AGC>AGT	p.S325S		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	325	Rod.|Linker 12.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TCAGGTCACGGCTGTTGTCCA	0.557													85	162					0	0	1	0	0
KRT82	3888	broad.mit.edu	37	12	52790732	52790732	+	Missense_Mutation	SNP	C	T	T	rs142616498	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52790732C>T	uc001sai.1	-	6	1118	c.1003G>A	c.(1003-1005)GAG>AAG	p.E335K		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	335	Coil 2.|Rod.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		TCCAGGATCTCGTTCTTACGG	0.557													13	37					0	0	1	0	0
KRT82	3888	broad.mit.edu	37	12	52799986	52799986	+	Missense_Mutation	SNP	G	A	A	rs72351593		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52799986G>A	uc001sai.1	-	1	191	c.76C>T	c.(76-78)CGG>TGG	p.R26W		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	26	Head.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		GTGACCATCCGGGGCATGACA	0.622													4	32					0	0	1	0	0
KRT75	9119	broad.mit.edu	37	12	52822170	52822170	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52822170C>T	uc001saj.2	-	7	1274	c.1252G>A	c.(1252-1254)GAG>AAG	p.E418K		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	418	Coil 2.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		TGCAGGGCCTCCTCAAGGTCC	0.597													8	41					0	0	1	0	0
KRT75	9119	broad.mit.edu	37	12	52822481	52822481	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52822481C>T	uc001saj.2	-	6	1104	c.1082G>A	c.(1081-1083)CGA>CAA	p.R361Q		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	361	Coil 2.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		TTTGGTGTTTCGAAGGTCATC	0.527													12	79					0	0	1	0	0
KRT75	9119	broad.mit.edu	37	12	52826857	52826857	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52826857C>T	uc001saj.2	-	2	700	c.678G>A	c.(676-678)AGG>AGA	p.R226R		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	226	Coil 1B.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		CCTGCATGTTCCTCAGTTCAG	0.537													34	77					0	0	1	0	0
KRT75	9119	broad.mit.edu	37	12	52827674	52827674	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52827674C>T	uc001saj.2	-	1	437	c.415G>A	c.(415-417)GAC>AAC	p.D139N		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	139	Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		ATGGTGGGGTCGATTTGCAGG	0.592													49	102					0	0	1	0	0
KRT75	9119	broad.mit.edu	37	12	52827873	52827873	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52827873G>A	uc001saj.2	-	1	238	c.216C>T	c.(214-216)TCC>TCT	p.S72S		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	72	Gly-rich.|Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		ACCCATTGATGGAGACCCGCT	0.622													34	67					0	0	1	0	0
KRT6B	3854	broad.mit.edu	37	12	52844213	52844213	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52844213G>A	uc001sak.2	-	2	780	c.732C>T	c.(730-732)GAC>GAT	p.D244D		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	244	Coil 1B.|Rod.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		CCTCCACCAGGTCCTGCATGT	0.542													15	173					0	0	1	0	0
KRT6C	286887	broad.mit.edu	37	12	52862934	52862934	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52862934C>T	uc001sal.3	-	9	1655	c.1607G>A	c.(1606-1608)GGG>GAG	p.G536E		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	536	Tail.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		GAGGCCACCCCCAATGGCTCT	0.592													22	69					0	0	1	0	0
KRT6C	286887	broad.mit.edu	37	12	52865921	52865921	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52865921G>A	uc001sal.3	-	2	732	c.684C>T	c.(682-684)ATC>ATT	p.I228I		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	228	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		GTTCCCCGACGATGCTGTCCA	0.597													42	132					0	0	1	0	0
KRT6A	3853	broad.mit.edu	37	12	52884373	52884373	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52884373C>T	uc001sam.2	-	5	1266	c.1057G>A	c.(1057-1059)GAG>AAG	p.E353K		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	353	Rod.|Coil 2.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		TACCAGGACTCAGCCTCAGCC	0.577													91	174					0	0	1	0	0
KRT6A	3853	broad.mit.edu	37	12	52886564	52886564	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52886564C>T	uc001sam.2	-	1	618	c.409G>A	c.(409-411)GAG>AAG	p.E137K		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	137	Head.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		ACGGTGACCTCTTGGATGCCT	0.632													22	58					0	0	1	0	0
KRT5	3852	broad.mit.edu	37	12	52908793	52908793	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52908793C>T	uc001san.2	-	9	1869	c.1706G>A	c.(1705-1707)GGG>GAG	p.G569E		NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	569	Tail.|Ser-rich.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCTGCTACCCCCGCCACTGCC	0.557													32	43					0	0	1	0	0
KRT71	112802	broad.mit.edu	37	12	52940209	52940209	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52940209C>T	uc001sao.2	-	7	1256	c.1186G>A	c.(1186-1188)GAG>AAG	p.E396K		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	396	Coil 2.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CCCTCCAGCTCGTCCAGCTTG	0.632													19	57					0	0	1	0	0
KRT71	112802	broad.mit.edu	37	12	52946817	52946817	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52946817C>T	uc001sao.2	-	1	115	c.45G>A	c.(43-45)GGG>GGA	p.G15G		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	15	Head.|Gly-rich.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CACTGAAGCCCCCCTTGGCGG	0.617													40	98					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52962009	52962009	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52962009C>T	uc001sap.1	-	7	1347	c.1299G>A	c.(1297-1299)CTG>CTA	p.L433L		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	433	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		TGTCCAGGGCCAGTTTCAGGC	0.647													35	76					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52965784	52965784	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52965784C>T	uc001sap.1	-	3	739	c.691G>A	c.(691-693)GAA>AAA	p.E231K		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	231	Coil 1B.|Rod.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		ATCTCCACTTCATATCTGCCA	0.537													14	104					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52967192	52967192	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52967192G>A	uc001sap.1	-	1	418	c.370C>T	c.(370-372)CCC>TCC	p.P124S		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	124	Head.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		ACGTTGAGGGGGGCCAAGAGG	0.592													21	122					0	0	1	0	0
KRT72	140807	broad.mit.edu	37	12	52979922	52979922	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:52979922C>T	uc001sar.2	-	9	1466	c.1380G>A	c.(1378-1380)GGG>GGA	p.G460G	KRT72_uc001saq.2_Silent_p.G460G|KRT72_uc010sns.1_Silent_p.G418G|KRT72_uc010snt.1_Silent_p.G272G	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	460	Tail.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		TGAAGCCAGCCCCTCCTGCCC	0.587													9	46					0	0	1	0	0
KRT73	319101	broad.mit.edu	37	12	53007517	53007517	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53007517G>A	uc001sas.2	-	5	974	c.939C>T	c.(937-939)ATC>ATT	p.I313I		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	313	Rod.|Coil 2.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCTTCCGGGCGATCTCCTCAT	0.597													33	82					0	0	1	0	0
KRT73	319101	broad.mit.edu	37	12	53007622	53007622	+	Silent	SNP	G	A	A	rs143904861		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53007622G>A	uc001sas.2	-	5	869	c.834C>T	c.(832-834)ATC>ATT	p.I278I		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	278	Coil 1B.|Rod.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		TGTGGGACTGGATCTGAGCAG	0.567													31	92					0	0	1	0	0
KRT73	319101	broad.mit.edu	37	12	53009975	53009975	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53009975C>T	uc001sas.2	-	2	672	c.637G>A	c.(637-639)GAA>AAA	p.E213K		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	213	Coil 1B.|Rod.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCCACCACTTCGCGCACGCTC	0.627													27	127					0	0	1	0	0
KRT73	319101	broad.mit.edu	37	12	53012211	53012211	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53012211C>T	uc001sas.2	-	1	133	c.98G>A	c.(97-99)CGA>CAA	p.R33Q		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	33	Head.|Gly-rich.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCCCCTGCTCGGTAGGAGGA	0.637													39	111					0	0	1	0	0
KRT73	319101	broad.mit.edu	37	12	53012265	53012266	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53012265_53012266CC>TT	uc001sas.2	-	1	78_79	c.43_44GG>AA	c.(43-45)GGG>AAG	p.G15K		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	15	Head.|Gly-rich.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCTGAAGCCCCCCTTGGCAGCA	0.614													21	80					0	0	1	0	0
KRT2	3849	broad.mit.edu	37	12	53040680	53040680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53040680G>A	uc001sat.2	-	7	1346	c.1313C>T	c.(1312-1314)GCC>GTC	p.A438V		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	438	Coil 2.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		CTTGTTCCTGGCATCCTTGAG	0.567													45	96					0	0	1	0	0
KRT2	3849	broad.mit.edu	37	12	53041993	53041993	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53041993C>T	uc001sat.2	-	5	1119	c.1086G>A	c.(1084-1086)AGG>AGA	p.R362R		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	362	Coil 2.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		CTTCCTTGCTCCTCTGGGCGA	0.582													53	113					0	0	1	0	0
KRT2	3849	broad.mit.edu	37	12	53045554	53045554	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53045554C>T	uc001sat.2	-	1	406	c.373G>A	c.(373-375)GGT>AGT	p.G125S		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	125	Head.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		cccccaaaacctccaaagcgg	0.209													9	29					0	0	1	0	0
KRT2	3849	broad.mit.edu	37	12	53045593	53045593	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53045593C>T	uc001sat.2	-	1	367	c.334G>A	c.(334-336)GGT>AGT	p.G112S		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	112	Head.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		ccaccgaaaccaccaccactg	0.104													4	14					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53069372	53069372	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53069372C>T	uc001sau.1	-	9	1599	c.1540G>A	c.(1540-1542)GGA>AGA	p.G514R	KRT1_uc001sav.1_Missense_Mutation_p.G514R	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	514	Gly/Ser-rich.|Tail.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						ctgccacctccacTGATGGTG	0.254													17	42					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53070220	53070220	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53070220C>T	uc001sau.1	-	7	1373	c.1314G>A	c.(1312-1314)AAG>AAA	p.K438K	KRT1_uc001sav.1_Silent_p.K438K	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	438	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						TCTTGGCATCCTTGAGGGCAT	0.537													23	65					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53070861	53070861	+	Silent	SNP	G	A	A	rs137978741		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53070861G>A	uc001sau.1	-	6	1295	c.1236C>T	c.(1234-1236)ATC>ATT	p.I412I	KRT1_uc001sav.1_Silent_p.I412I	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	412	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						TGACATTGTCGATTTCAGATC	0.453													38	43					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53072390	53072390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53072390C>T	uc001sau.1	-	2	801	c.742G>A	c.(742-744)GAT>AAT	p.D248N	KRT1_uc001sav.1_Missense_Mutation_p.D248N	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	248	Coil 1B.|Rod.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding	p.D248N(1)		ovary(1)|skin(1)	2						CGAGATTGATCACTCTTCAGT	0.473													26	105					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53072446	53072446	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53072446G>A	uc001sau.1	-	2	745	c.686C>T	c.(685-687)CCC>CTC	p.P229L	KRT1_uc001sav.1_Missense_Mutation_p.P229L	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	229	Rod.|Linker 1.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						CTCAAAGTAGGGCTCTAAATT	0.468													16	100					0	0	1	0	0
KRT77	374454	broad.mit.edu	37	12	53086630	53086630	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53086630C>T	uc001saw.2	-	6	1144	c.1115G>A	c.(1114-1116)GGA>GAA	p.G372E	KRT77_uc009zmi.2_Missense_Mutation_p.G130E	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	372	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)	1						CAGGTCGTCTCCATGTCTCCC	0.587													16	55					0	0	1	0	0
KRT77	374454	broad.mit.edu	37	12	53096708	53096708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53096708G>A	uc001saw.2	-	1	540	c.511C>T	c.(511-513)CTC>TTC	p.L171F	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	171	Coil 1A.|Rod.					keratin filament	structural molecule activity			ovary(1)	1						ttgttgttgagaaccataatc	0.308													45	131					0	0	1	0	0
KRT77	374454	broad.mit.edu	37	12	53097069	53097069	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53097069C>T	uc001saw.2	-	1	179	c.150G>A	c.(148-150)GGG>GGA	p.G50G	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	50	Head.					keratin filament	structural molecule activity			ovary(1)	1						TTCCATGGATCCCATATCCAC	0.547													19	42					0	0	1	0	0
KRT76	51350	broad.mit.edu	37	12	53165672	53165672	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53165672C>T	uc001sax.2	-	6	1300	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	416	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						TTGACATTTTCAATCTCAGCC	0.552													15	173					0	0	1	0	0
KRT76	51350	broad.mit.edu	37	12	53165751	53165751	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53165751C>T	uc001sax.2	-	6	1221	c.1167G>A	c.(1165-1167)AGG>AGA	p.R389R		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	389	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						CATCCCCATGCCTGCCAGCTG	0.507													39	73					0	0	1	0	0
KRT76	51350	broad.mit.edu	37	12	53170910	53170910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53170910G>A	uc001sax.2	-	1	220	c.166C>T	c.(166-168)CGC>TGC	p.R56C		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	56	Head.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						TAGAGGCTGCGACTGCCAAAG	0.652													47	112					0	0	1	0	0
KRT3	3850	broad.mit.edu	37	12	53185105	53185105	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53185105C>T	uc001say.2	-	7	1486	c.1420G>A	c.(1420-1422)GCG>ACG	p.A474T		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	474	Rod.|Coil 2.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						TCATCCTTCGCCTGCTGTAGA	0.612													42	80					0	0	1	0	0
KRT4	3851	broad.mit.edu	37	12	53201524	53201524	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53201524C>T	uc001saz.2	-	7	1743	c.1472G>A	c.(1471-1473)CGA>CAA	p.R491Q		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	417						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						ACGCAGCATTCGTGCCAGCTC	0.597													62	87					0	0	1	0	0
KRT4	3851	broad.mit.edu	37	12	53201637	53201637	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53201637A>G	uc001saz.2	-	7	1630	c.1359T>C	c.(1357-1359)CTT>CTC	p.L453L		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	379						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						CGGATACCTGAAGAGTCTGGC	0.577													6	51					0	0	1	0	0
KRT4	3851	broad.mit.edu	37	12	53207919	53207919	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53207919C>T	uc001saz.2	-	1	417	c.146G>A	c.(145-147)CGA>CAA	p.R49Q		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	Error:Variant_position_missing_in_B4DRS2_after_alignment						keratin filament	structural molecule activity	p.R49P(1)		ovary(4)|skin(2)	6						CCTCAGCCTTCGTCTCTTATA	0.567													6	44					0	0	1	0	0
KRT4	3851	broad.mit.edu	37	12	53208027	53208027	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53208027C>T	uc001saz.2	-	1	309	c.38G>A	c.(37-39)GGG>GAG	p.G13E		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	Error:Variant_position_missing_in_B4DRS2_after_alignment						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						CTTCCCGCACCCGTTGAGCAT	0.537													22	49					0	0	1	0	0
KRT79	338785	broad.mit.edu	37	12	53215798	53215798	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53215798G>A	uc001sbb.2	-	9	1499	c.1466C>T	c.(1465-1467)TCC>TTC	p.S489F	KRT79_uc001sba.2_Missense_Mutation_p.S260F	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	489	Tail.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						CCCACCCAGGGAGATGCCACC	0.622													13	57					0	0	1	0	0
KRT79	338785	broad.mit.edu	37	12	53216853	53216853	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53216853G>A	uc001sbb.2	-	7	1347	c.1314C>T	c.(1312-1314)GCC>GCT	p.A438A	KRT79_uc001sba.2_Silent_p.A209A	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	438	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						CCACGTCCAGGGCCAGCTTGA	0.632													28	71					0	0	1	0	0
KRT79	338785	broad.mit.edu	37	12	53223903	53223903	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53223903C>T	uc001sbb.2	-	4	793	c.760_splice	c.e4-1	p.D254_splice	KRT79_uc001sba.2_Splice_Site_p.D25_splice	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L							keratin filament	structural molecule activity			ovary(2)|skin(2)	4						CATCCACATCCTGGGGACGAG	0.582													19	51					0	0	1	0	0
KRT79	338785	broad.mit.edu	37	12	53225195	53225195	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53225195C>T	uc001sbb.2	-	2	726	c.693G>A	c.(691-693)AAG>AAA	p.K231K	KRT79_uc001sba.2_5'Flank	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	231	Rod.|Coil 1B.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						CTCACTTGTTCTTGAAGTCCT	0.642													35	107					0	0	1	0	0
KRT79	338785	broad.mit.edu	37	12	53225270	53225270	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53225270C>T	uc001sbb.2	-	2	651	c.618G>A	c.(616-618)CTG>CTA	p.L206L	KRT79_uc001sba.2_5'Flank	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	206	Rod.|Coil 1B.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						GAAGTCTGTCCAGCGTGCTCC	0.612													32	105					0	0	1	0	0
KRT79	338785	broad.mit.edu	37	12	53227577	53227577	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53227577G>A	uc001sbb.2	-	1	501	c.468C>T	c.(466-468)TTC>TTT	p.F156F		NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	156	Rod.|Coil 1A.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						CCTTGTCGATGAAGGAGGCGA	0.607													32	234					0	0	1	0	0
KRT79	338785	broad.mit.edu	37	12	53227586	53227586	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53227586G>A	uc001sbb.2	-	1	492	c.459C>T	c.(457-459)TTC>TTT	p.F153F		NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	153	Rod.|Coil 1A.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						TGAAGGAGGCGAACTTGTTGT	0.607													68	185					0	0	1	0	0
KRT78	196374	broad.mit.edu	37	12	53232924	53232924	+	Silent	SNP	C	T	T	rs140251181		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53232924C>T	uc001sbc.1	-	9	1600	c.1536G>A	c.(1534-1536)TCG>TCA	p.S512S		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	512	Tail.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						TCTTCAGACTCGACTCAACTG	0.582													9	16					0	0	1	0	0
KRT78	196374	broad.mit.edu	37	12	53233753	53233753	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53233753C>T	uc001sbc.1	-	7	1127	c.1063G>A	c.(1063-1065)GCC>ACC	p.A355T		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	355	Coil 2.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						GTGATGGCGGCCTGCAGGCTG	0.582													14	27					0	0	1	0	0
KRT78	196374	broad.mit.edu	37	12	53241751	53241751	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53241751C>T	uc001sbc.1	-	2	603	c.539G>A	c.(538-540)CGA>CAA	p.R180Q		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	180	Coil 1B.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						CAGAGCCCCTCGTTCTCCCTG	0.607													8	58					0	0	1	0	0
KRT78	196374	broad.mit.edu	37	12	53242382	53242382	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53242382C>T	uc001sbc.1	-	1	397	c.333G>A	c.(331-333)GAG>GAA	p.E111E		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	111	Coil 1A.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						TCTCCTGGGTCTCCTGCGTCC	0.567													9	67					0	0	1	0	0
KRT8	3856	broad.mit.edu	37	12	53295761	53295761	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53295761G>A	uc001sbd.2	-	2	523	c.420C>T	c.(418-420)TTC>TTT	p.F140F	KRT8_uc009zmj.2_Silent_p.F140F|KRT8_uc009zmk.1_Silent_p.F168F|KRT8_uc009zml.1_Silent_p.F140F|KRT8_uc009zmm.1_Silent_p.F140F	NM_002273	NP_002264	P05787	K2C8_HUMAN	keratin 8	140	Linker 1.|Rod.				cytoskeleton organization|interspecies interaction between organisms	cytoplasm|keratin filament|nuclear matrix|nucleoplasm	protein binding|structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.108)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGTAGCTCTCGAACATGTTGT	0.572													16	63					0	0	1	0	0
KRT8	3856	broad.mit.edu	37	12	53298740	53298740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53298740G>A	uc001sbd.2	-	1	129	c.26C>T	c.(25-27)TCC>TTC	p.S9F	KRT8_uc009zmj.2_Missense_Mutation_p.S9F|KRT8_uc009zmk.1_Missense_Mutation_p.S37F|KRT8_uc009zml.1_Missense_Mutation_p.S9F|KRT8_uc009zmm.1_Missense_Mutation_p.S9F	NM_002273	NP_002264	P05787	K2C8_HUMAN	keratin 8	9	Head.|Ser-rich.				cytoskeleton organization|interspecies interaction between organisms	cytoplasm|keratin filament|nuclear matrix|nucleoplasm	protein binding|structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.108)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CACCTTGTAGGACTTCTGGGT	0.647													10	17					0	0	1	0	0
KRT18	3875	broad.mit.edu	37	12	53343040	53343040	+	Missense_Mutation	SNP	C	T	T	rs74379840		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53343040C>T	uc001sbe.2	+	2	152	c.83C>T	c.(82-84)CCG>CTG	p.P28L	KRT18_uc009zmn.1_Missense_Mutation_p.P28L|KRT18_uc001sbf.1_5'UTR|KRT18_uc001sbg.2_Missense_Mutation_p.P28L|KRT18_uc009zmo.2_Missense_Mutation_p.P28L|KRT8_uc009zml.1_Intron|KRT8_uc009zmm.1_Intron	NM_199187	NP_954657	P05783	K1C18_HUMAN	keratin 18	28	Head.				anatomical structure morphogenesis|cell cycle|Golgi to plasma membrane CFTR protein transport|interspecies interaction between organisms|negative regulation of apoptosis	centriolar satellite|keratin filament|perinuclear region of cytoplasm	protein binding|structural molecule activity			skin(1)	1						GGCGCCCGGCCGGTCAGCAGC	0.697													46	94					0	0	1	0	0
EIF4B	1975	broad.mit.edu	37	12	53421577	53421577	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53421577C>T	uc001sbh.3	+	7	885	c.679C>T	c.(679-681)CGT>TGT	p.R227C	EIF4B_uc009zmp.1_RNA|EIF4B_uc010snu.1_Missense_Mutation_p.R227C|EIF4B_uc010snv.1_Missense_Mutation_p.R188C|EIF4B_uc001sbi.2_5'UTR	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	227	Arg-rich.|Asp-rich.				insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2						GTATCGAGATCGTTATGATTC	0.373													22	133					0	0	1	0	0
SPRYD3	84926	broad.mit.edu	37	12	53461987	53461987	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53461987G>A	uc001sbt.1	-	7	816	c.795C>T	c.(793-795)ATC>ATT	p.I265I	SPRYD3_uc010snw.1_Silent_p.I91I	NM_032840	NP_116229	Q8NCJ5	SPRY3_HUMAN	SPRY domain containing 3	265										central_nervous_system(1)	1						CAGGGTCCACGATCTCCACCT	0.612													52	132					0	0	1	0	0
SOAT2	8435	broad.mit.edu	37	12	53515095	53515095	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53515095G>A	uc001sbv.2	+	12	1234	c.1146G>A	c.(1144-1146)TGG>TGA	p.W382*	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	382					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						AGGACTGGTGGAACTCAACGT	0.592													23	46					0	0	1	0	0
SOAT2	8435	broad.mit.edu	37	12	53515147	53515147	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53515147G>A	uc001sbv.2	+	12	1286	c.1198G>A	c.(1198-1200)GAC>AAC	p.D400N	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	400					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						GGTGGTCCATGACTGGCTGTA	0.567													7	72					0	0	1	0	0
SOAT2	8435	broad.mit.edu	37	12	53516948	53516948	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53516948C>T	uc001sbv.2	+	13	1408	c.1320C>T	c.(1318-1320)TTC>TTT	p.F440F	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	440	Helical; (Potential).				cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						TCTTCTGCTTCGTCCTGGGGT	0.592													20	66					0	0	1	0	0
CSAD	51380	broad.mit.edu	37	12	53552405	53552405	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53552405G>A	uc001sby.2	-	16	1498	c.1372C>T	c.(1372-1374)CAC>TAC	p.H458Y	CSAD_uc001sbw.2_Missense_Mutation_p.H311Y|CSAD_uc009zmt.2_Missense_Mutation_p.H240Y|CSAD_uc010snx.1_Missense_Mutation_p.H485Y|CSAD_uc001sbz.2_Missense_Mutation_p.H458Y|CSAD_uc009zmu.2_Missense_Mutation_p.H311Y|CSAD_uc001sca.3_Intron	NM_015989	NP_057073	Q9Y600	CSAD_HUMAN	cysteine sulfinic acid decarboxylase	458					carboxylic acid metabolic process		pyridoxal phosphate binding|sulfinoalanine decarboxylase activity			ovary(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	CGGGTCCCGTGGGGCTGGTAG	0.612									Hereditary_Prostate_Cancer				9	28					0	0	1	0	0
RARG	5916	broad.mit.edu	37	12	53607910	53607910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53607910G>A	uc001sce.2	-	7	1231	c.746C>T	c.(745-747)CCT>CTT	p.P249L	RARG_uc001scd.2_Missense_Mutation_p.P238L|RARG_uc010sob.1_Missense_Mutation_p.P227L|RARG_uc001scf.2_Missense_Mutation_p.P249L|RARG_uc001scg.2_Missense_Mutation_p.P177L|RARG_uc010soc.1_Missense_Mutation_p.P128L|RARG_uc010sod.1_Missense_Mutation_p.P286L	NM_000966	NP_000957	P13631	RARG_HUMAN	retinoic acid receptor, gamma isoform 1	249	Ligand-binding.				canonical Wnt receptor signaling pathway|embryonic eye morphogenesis|embryonic hindlimb morphogenesis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|regulation of cell size|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid	integral to membrane|transcription factor complex	retinoic acid receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			breast(2)|ovary(1)|lung(1)	4					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tazarotene(DB00799)|Tretinoin(DB00755)	TGTAAAGCCAGGCAACCGCTT	0.572											OREG0021862	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	159					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53662562	53662562	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53662562C>T	uc001sck.2	+	2	103	c.12C>T	c.(10-12)TTC>TTT	p.F4F	ESPL1_uc001scj.2_5'UTR	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	4					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						TGAGGAGCTTCAAAAGAGTCA	0.532													3	14					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53663157	53663157	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53663157C>T	uc001sck.2	+	3	522	c.431C>T	c.(430-432)GCT>GTT	p.A144V	ESPL1_uc001scj.2_5'UTR	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	144					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						GAGGCCGTGGCTCGGGGCAGC	0.622													35	48					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53664532	53664532	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53664532C>T	uc001sck.2	+	5	1410	c.1319C>T	c.(1318-1320)GCC>GTC	p.A440V	ESPL1_uc001scj.2_Missense_Mutation_p.A115V	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	440					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						ATGCTGGAGGCCTTAGAGGGC	0.552													33	76					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53666508	53666508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53666508C>T	uc001sck.2	+	6	1464	c.1373C>T	c.(1372-1374)TCT>TTT	p.S458F	ESPL1_uc001scj.2_Missense_Mutation_p.S133F	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	458					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						CCTGCAGCTTCTTACACCAGT	0.537													128	389					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53671347	53671347	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53671347C>T	uc001sck.2	+	10	2270	c.2179C>T	c.(2179-2181)CGT>TGT	p.R727C	ESPL1_uc001scj.2_Missense_Mutation_p.R402C|ESPL1_uc010soe.1_5'Flank	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	727					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						CCAGGAAGATCGTTTCCTATA	0.502													21	80					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53683068	53683068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53683068C>T	uc001sck.2	+	21	4994	c.4903C>T	c.(4903-4905)CAC>TAC	p.H1635Y	ESPL1_uc001scj.2_Missense_Mutation_p.H1310Y	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1635					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						GCTGCTCACCCACCTCCACAG	0.602													10	152					0	0	1	0	0
AAAS	8086	broad.mit.edu	37	12	53702957	53702957	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53702957G>A	uc001scr.3	-	9	1082	c.919C>T	c.(919-921)CCT>TCT	p.P307S	AAAS_uc001scs.3_Missense_Mutation_p.P274S	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,	307	WD 4.				carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						ACAGCTGAAGGAGTGGTAGCC	0.582													76	159					0	0	1	0	0
AAAS	8086	broad.mit.edu	37	12	53708591	53708591	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53708591G>A	uc001scr.3	-	6	652	c.489C>T	c.(487-489)ACC>ACT	p.T163T	AAAS_uc001scs.3_Intron	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,	163	WD 1.				carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						CAAACTTGTTGGTGTGGGGGT	0.542													7	19					0	0	1	0	0
SP7	121340	broad.mit.edu	37	12	53723042	53723042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53723042C>T	uc001sct.2	-	2	291	c.184G>A	c.(184-186)GAT>AAT	p.D62N	SP7_uc001scu.2_Missense_Mutation_p.D44N|SP7_uc001scv.2_Missense_Mutation_p.D62N	NM_152860	NP_690599	Q8TDD2	SP7_HUMAN	osterix	62					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGATAAGCATCCCCCATGGTT	0.552													44	139					0	0	1	0	0
SP1	6667	broad.mit.edu	37	12	53775537	53775537	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53775537C>T	uc001scw.2	+	2	199	c.102C>T	c.(100-102)GCC>GCT	p.A34A	SP1_uc010sog.1_Silent_p.A27A	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	34	Repressor domain.				positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		GTGGTGGTGCCTTTTCACAGG	0.478											OREG0021870	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	76					0	0	1	0	0
AMHR2	269	broad.mit.edu	37	12	53823694	53823694	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53823694G>A	uc001scx.1	+	9	1298	c.1220G>A	c.(1219-1221)CGA>CAA	p.R407Q	AMHR2_uc009zmy.1_Missense_Mutation_p.R407Q	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	407	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	GCCCTCCGACGAGCTGATATT	0.582									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				19	52					0	0	1	0	0
PCBP2	5094	broad.mit.edu	37	12	53853075	53853075	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53853075C>T	uc001sdl.3	+	6	613	c.263C>T	c.(262-264)ACC>ATC	p.T88I	PCBP2_uc001sdc.3_Missense_Mutation_p.T88I|PCBP2_uc001sdb.3_Missense_Mutation_p.T88I|PCBP2_uc001sde.3_Missense_Mutation_p.T88I|PCBP2_uc001sdi.3_Missense_Mutation_p.T88I|PCBP2_uc001sdd.3_Missense_Mutation_p.T88I|PCBP2_uc001sdf.3_Missense_Mutation_p.T88I|PCBP2_uc009zna.2_Missense_Mutation_p.T49I|PCBP2_uc010soh.1_Missense_Mutation_p.T88I|PCBP2_uc009zmz.1_Missense_Mutation_p.T30I|PCBP2_uc001sdg.1_RNA	NM_001128911	NP_001122383	Q15366	PCBP2_HUMAN	poly(rC) binding protein 2 isoform d	88					innate immune response|negative regulation of defense response to virus|negative regulation of type I interferon production|nuclear mRNA splicing, via spliceosome|proteasomal ubiquitin-dependent protein catabolic process|response to virus	cytosol|nucleoplasm|ribonucleoprotein complex	DNA binding|RNA binding|ubiquitin protein ligase binding				0						AGCTCTATGACCAATAGCACA	0.483													31	98					0	0	1	0	0
PCBP2	5094	broad.mit.edu	37	12	53856349	53856349	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53856349C>T	uc001sdl.3	+	8	939	c.589C>T	c.(589-591)CAG>TAG	p.Q197*	PCBP2_uc001sdc.3_Nonsense_Mutation_p.Q197*|PCBP2_uc001sdb.3_Nonsense_Mutation_p.Q193*|PCBP2_uc001sde.3_Nonsense_Mutation_p.Q193*|PCBP2_uc001sdi.3_Nonsense_Mutation_p.Q197*|PCBP2_uc001sdd.3_Nonsense_Mutation_p.Q193*|PCBP2_uc001sdf.3_Nonsense_Mutation_p.Q193*|PCBP2_uc009zna.2_Nonsense_Mutation_p.Q154*|PCBP2_uc010soi.1_5'UTR|PCBP2_uc001sdj.3_5'UTR|PCBP2_uc010soj.1_5'UTR|PCBP2_uc001sdk.3_5'UTR|PCBP2_uc010soh.1_Nonsense_Mutation_p.Q193*	NM_001128911	NP_001122383	Q15366	PCBP2_HUMAN	poly(rC) binding protein 2 isoform d	197					innate immune response|negative regulation of defense response to virus|negative regulation of type I interferon production|nuclear mRNA splicing, via spliceosome|proteasomal ubiquitin-dependent protein catabolic process|response to virus	cytosol|nucleoplasm|ribonucleoprotein complex	DNA binding|RNA binding|ubiquitin protein ligase binding				0						TGCAGGTGGTCAGGTAAGAAA	0.512													11	57					0	0	1	0	0
CALCOCO1	57658	broad.mit.edu	37	12	54107574	54107574	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54107574G>A	uc001sef.2	-	13	1846	c.1702C>T	c.(1702-1704)CGA>TGA	p.R568*	CALCOCO1_uc001see.2_Nonsense_Mutation_p.R69*|CALCOCO1_uc010som.1_Nonsense_Mutation_p.R483*|CALCOCO1_uc010son.1_Nonsense_Mutation_p.R445*|CALCOCO1_uc001seh.2_Nonsense_Mutation_p.R568*|CALCOCO1_uc009znd.2_Nonsense_Mutation_p.R568*|CALCOCO1_uc001seg.2_Nonsense_Mutation_p.R393*	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform	568	C-terminal AD (CTNNB1 binding site) (By similarity).				steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						GAAGCCTCTCGAGGCCCAGCA	0.607													10	119					0	0	1	0	0
HOXC10	3226	broad.mit.edu	37	12	54379110	54379110	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54379110G>A	uc001sen.2	+	1	165	c.67G>A	c.(67-69)GAG>AAG	p.E23K		NM_017409	NP_059105	Q9NYD6	HXC10_HUMAN	homeobox C10	23					positive regulation of cell proliferation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1						CGGCGGAGGAGAGCGCTATAG	0.587													46	100					0	0	1	0	0
HOXC10	3226	broad.mit.edu	37	12	54379177	54379177	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54379177G>A	uc001sen.2	+	1	232	c.134G>A	c.(133-135)AGG>AAG	p.R45K		NM_017409	NP_059105	Q9NYD6	HXC10_HUMAN	homeobox C10	45					positive regulation of cell proliferation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1						GGGGTGATGAGGGGCTGCGGG	0.662													13	58					0	0	1	0	0
HOXC8	3224	broad.mit.edu	37	12	54405148	54405148	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54405148G>A	uc001ser.2	+	2	891	c.712G>A	c.(712-714)GAA>AAA	p.E238K		NM_022658	NP_073149	P31273	HXC8_HUMAN	homeobox C8	238						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ggaggaaaaggaagaAAACAA	0.303													20	57					0	0	1	0	0
HOXC4	3221	broad.mit.edu	37	12	54448070	54448070	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54448070C>T	uc001seu.2	+	3	1044	c.364C>T	c.(364-366)CCC>TCC	p.P122S	HOXC4_uc001sex.2_Missense_Mutation_p.P122S	NM_014620	NP_055435	P09017	HXC4_HUMAN	homeobox C4	122						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCAGCCAGCCCCCGACCATCC	0.617													10	25					0	0	1	0	0
HOXC4	3221	broad.mit.edu	37	12	54448806	54448806	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54448806C>T	uc001seu.2	+	4	1292	c.612C>T	c.(610-612)TTC>TTT	p.F204F	HOXC4_uc001sex.2_Silent_p.F204F	NM_014620	NP_055435	P09017	HXC4_HUMAN	homeobox C4	204	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AAATCTGGTTCCAAAACCGTC	0.567													15	25					0	0	1	0	0
NFE2	4778	broad.mit.edu	37	12	54686601	54686601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54686601C>T	uc009znk.2	-	2	1189	c.679G>A	c.(679-681)GAA>AAA	p.E227K	NFE2_uc001sfq.2_Missense_Mutation_p.E227K|NFE2_uc001sfr.3_Missense_Mutation_p.E227K|NFE2_uc009znl.2_Missense_Mutation_p.E227K	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	227					blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						GCCCGACGTTCATCCCGACTC	0.577													14	24					0	0	1	0	0
NFE2	4778	broad.mit.edu	37	12	54686769	54686769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54686769C>T	uc009znk.2	-	2	1021	c.511G>A	c.(511-513)GAA>AAA	p.E171K	NFE2_uc001sfq.2_Missense_Mutation_p.E171K|NFE2_uc001sfr.3_Missense_Mutation_p.E171K|NFE2_uc009znl.2_Missense_Mutation_p.E171K	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	171	Transactivation domain.				blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						TCTACATATTCGCTGCGCCGC	0.562													16	104					0	0	1	0	0
GPR84	53831	broad.mit.edu	37	12	54756536	54756536	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54756536G>T	uc001sfu.2	-	2	1190	c.1100C>A	c.(1099-1101)CCT>CAT	p.P367H		NM_020370	NP_065103	Q9NQS5	GPR84_HUMAN	G protein-coupled receptor 84	367	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			breast(2)	2						ATAGAGCACAGGGTTGATGCA	0.542													84	209					2.5963e-48	2.61291e-48	1	1	0
ITGA5	3678	broad.mit.edu	37	12	54791248	54791248	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54791248G>A	uc001sga.2	-	29	3035	c.2967C>T	c.(2965-2967)ACC>ACT	p.T989T		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	989	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CTTCTGCCTTGGTCCATTGCA	0.522													12	41					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54792418	54792418	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54792418C>T	uc001sga.2	-	28	2974	c.2906G>A	c.(2905-2907)CGA>CAA	p.R969Q		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	969	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						AGGCAGGATTCGGTAGGGCAT	0.577													12	32					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54793667	54793667	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54793667G>A	uc001sga.2	-	26	2776	c.2708C>T	c.(2707-2709)TCC>TTC	p.S903F		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	903	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						AGGTCCCGAGGAAGCAGAGCT	0.552											OREG0021897	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	120					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54797988	54797988	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54797988G>A	uc001sga.2	-	15	1574	c.1506C>T	c.(1504-1506)TTC>TTT	p.F502F		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	502	Extracellular (Potential).|FG-GAP 7.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						ACATGGCGGGGAAGATGGTGA	0.597											OREG0021554	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	85					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54798615	54798615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54798615C>T	uc001sga.2	-	13	1357	c.1289G>A	c.(1288-1290)GGG>GAG	p.G430E	ITGA5_uc010sow.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	430	Extracellular (Potential).|FG-GAP 6.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						TCCTGGGCCCCCAGGAAATAC	0.617											OREG0021554	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	36					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54805731	54805731	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54805731C>T	uc001sga.2	-	2	304	c.236G>A	c.(235-237)GGA>GAA	p.G79E	ITGA5_uc010sow.1_Intron|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	79	Extracellular (Potential).|FG-GAP 1.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CTTGGGTGCTCCCACCAGCAC	0.602													11	25					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54893190	54893190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54893190G>A	uc001sgc.3	+	2	233	c.154G>A	c.(154-156)GAA>AAA	p.E52K	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.E2K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	52					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						AAAGTCCATGGAACCATCTCT	0.418													42	91					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54894327	54894327	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54894327G>A	uc001sgc.3	+	3	303	c.224G>A	c.(223-225)GGA>GAA	p.G75E	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.G25E	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	75					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CAACATTTAGGACCAGTACAT	0.373													57	139					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54894350	54894350	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54894350G>A	uc001sgc.3	+	3	326	c.247G>A	c.(247-249)GAG>AAG	p.E83K	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.E33K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	83					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TGAAAAAGCCGAGATAATTAG	0.383													46	174					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54901636	54901636	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54901636G>A	uc001sgc.3	+	4	386	c.307_splice	c.e4-1	p.D103_splice	NCKAP1L_uc010sox.1_Splice_Site|NCKAP1L_uc010soy.1_Splice_Site_p.D53_splice	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like						actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TCCACCCCCAGGATCATGTAT	0.413													51	163					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54902260	54902260	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54902260C>T	uc001sgc.3	+	5	530	c.451C>T	c.(451-453)CGG>TGG	p.R151W	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.R101W	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	151					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GATTGAAGATCGGCGGATACT	0.423													99	155					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54903535	54903535	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54903535C>T	uc001sgc.3	+	6	668	c.589C>T	c.(589-591)CAC>TAC	p.H197Y	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.H147Y	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	197					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GTTTGGGCCTCACACAAAGGC	0.488													21	187					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54903692	54903692	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54903692G>A	uc001sgc.3	+	7	737	c.658G>A	c.(658-660)GAG>AAG	p.E220K	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.E170K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	220					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CCAGGGGGCTGAGCAGTGGCG	0.507													69	131					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54905628	54905628	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54905628G>A	uc001sgc.3	+	8	856	c.777G>A	c.(775-777)TGG>TGA	p.W259*	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Nonsense_Mutation_p.W209*	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	259					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TGGAGCGCTGGATTATCAGTA	0.413													51	98					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54913107	54913107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54913107C>T	uc001sgc.3	+	16	1695	c.1616C>T	c.(1615-1617)TCT>TTT	p.S539F	NCKAP1L_uc010sox.1_Missense_Mutation_p.S81F|NCKAP1L_uc010soy.1_Missense_Mutation_p.S489F	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	539					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TCTGATCTGTCTACTTTCTGG	0.383													35	98					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54914924	54914924	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54914924G>A	uc001sgc.3	+	18	1859	c.1780G>A	c.(1780-1782)GGT>AGT	p.G594S	NCKAP1L_uc010sox.1_Missense_Mutation_p.G136S|NCKAP1L_uc010soy.1_Missense_Mutation_p.G544S	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	594					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CAAGAACCATGGTCTTCACCA	0.537													12	108					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54925084	54925084	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54925084G>A	uc001sgc.3	+	23	2626	c.2547G>A	c.(2545-2547)ATG>ATA	p.M849I	NCKAP1L_uc010sox.1_Missense_Mutation_p.M391I|NCKAP1L_uc010soy.1_Missense_Mutation_p.M799I	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	849					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CCTATGGCATGAAGTTCCTGA	0.507													18	221					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54925570	54925570	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54925570C>T	uc001sgc.3	+	25	2821	c.2742C>T	c.(2740-2742)ATC>ATT	p.I914I	NCKAP1L_uc010sox.1_Silent_p.I456I|NCKAP1L_uc010soy.1_Silent_p.I864I	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	914					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TTGGGGTTATCCTCAGTTTCA	0.493													20	48					0	0	1	0	0
PDE1B	5153	broad.mit.edu	37	12	54963142	54963142	+	Silent	SNP	C	T	T	rs151025806	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54963142C>T	uc001sgd.1	+	4	568	c.402C>T	c.(400-402)TTC>TTT	p.F134F	PDE1B_uc010soz.1_5'UTR|PDE1B_uc010spa.1_Silent_p.F93F|PDE1B_uc001sgf.2_5'UTR|PDE1B_uc001sge.2_Silent_p.F114F|PDE1B_uc009znq.2_Intron	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	134					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CTGGGATCTTCGTGGAACGGT	0.622													11	32					0	0	1	0	0
PDE1B	5153	broad.mit.edu	37	12	54967229	54967229	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54967229G>A	uc001sgd.1	+	9	1093	c.927G>A	c.(925-927)ATG>ATA	p.M309I	PDE1B_uc010soz.1_Missense_Mutation_p.M172I|PDE1B_uc010spa.1_Missense_Mutation_p.M268I|PDE1B_uc001sgf.2_Missense_Mutation_p.M172I|PDE1B_uc001sge.2_Missense_Mutation_p.M289I|PDE1B_uc009znq.2_Missense_Mutation_p.M105I	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	309	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						ATGATGAGATGAACATTTTCA	0.453													17	73					0	0	1	0	0
PDE1B	5153	broad.mit.edu	37	12	54971043	54971043	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54971043C>T	uc001sgd.1	+	15	1708	c.1542C>T	c.(1540-1542)TCC>TCT	p.S514S	PDE1B_uc010soz.1_Silent_p.S377S|PDE1B_uc010spa.1_Silent_p.S473S|PDE1B_uc001sgf.2_Silent_p.S377S|PDE1B_uc001sge.2_Silent_p.S494S|PDE1B_uc009znq.2_Silent_p.S310S	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	514					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						ACGAGCTGTCCCCCTGTGAAG	0.557													37	149					0	0	1	0	0
PDE1B	5153	broad.mit.edu	37	12	54971065	54971065	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54971065C>T	uc001sgd.1	+	15	1730	c.1564C>T	c.(1564-1566)CCA>TCA	p.P522S	PDE1B_uc010soz.1_Missense_Mutation_p.P385S|PDE1B_uc010spa.1_Missense_Mutation_p.P481S|PDE1B_uc001sgf.2_Missense_Mutation_p.P385S|PDE1B_uc001sge.2_Missense_Mutation_p.P502S|PDE1B_uc009znq.2_Missense_Mutation_p.P318S	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	522					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGAGGCCCCCCCATCCCCTGC	0.567													63	128					0	0	1	0	0
PPP1R1A	5502	broad.mit.edu	37	12	54976578	54976578	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:54976578G>A	uc001sgg.2	-	4	356	c.185C>T	c.(184-186)TCC>TTC	p.S62F		NM_006741	NP_006732	Q13522	PPR1A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	62					glycogen metabolic process|signal transduction		protein binding|protein serine/threonine phosphatase inhibitor activity				0						TGCCAAAGTGGACTGTGAAGG	0.597													25	43					0	0	1	0	0
LACRT	90070	broad.mit.edu	37	12	55025539	55025539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55025539C>T	uc001sgi.1	-	4	376	c.338G>A	c.(337-339)GGA>GAA	p.G113E		NM_033277	NP_150593	Q9GZZ8	LACRT_HUMAN	lacritin precursor	113					calcineurin-NFAT signaling pathway|positive regulation of epithelial cell proliferation|positive regulation of NFAT protein import into nucleus|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of secretion|protein localization in Golgi apparatus|tear secretion	extracellular region|stored secretory granule	collagen binding|fibronectin binding|glycoprotein binding|growth factor activity|laminin-1 binding|protein N-terminus binding			central_nervous_system(1)	1						GAATTGTTTTCCACCTGGCAC	0.473													57	147					0	0	1	0	0
DCD	117159	broad.mit.edu	37	12	55038536	55038536	+	Silent	SNP	G	A	A	rs139716642		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55038536G>A	uc001sgj.2	-	5	356	c.294C>T	c.(292-294)GCC>GCT	p.A98A	DCD_uc009znt.2_Missense_Mutation_p.R120C|DCD_uc009znu.2_RNA	NM_053283	NP_444513	P81605	DCD_HUMAN	dermcidin preproprotein	98					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			ovary(1)	1		Myeloproliferative disorder(1001;0.0255)				CGTCATGGACGGCTCCTAGGA	0.294													9	19					0	0	1	0	0
DCD	117159	broad.mit.edu	37	12	55039011	55039011	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55039011C>T	uc001sgj.2	-	4	297	c.235G>A	c.(235-237)GGA>AGA	p.G79R	DCD_uc009znt.2_Missense_Mutation_p.G79R|DCD_uc009znu.2_RNA	NM_053283	NP_444513	P81605	DCD_HUMAN	dermcidin preproprotein	79					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			ovary(1)	1		Myeloproliferative disorder(1001;0.0255)				TTTCCGAGTCCCCCCACAGCT	0.478													33	87					0	0	1	0	0
KIAA0748	9840	broad.mit.edu	37	12	55356487	55356487	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55356487C>T	uc001sgn.3	-	9	1305	c.1195G>A	c.(1195-1197)GAT>AAT	p.D399N	KIAA0748_uc001sgl.3_Missense_Mutation_p.D261N|KIAA0748_uc001sgm.3_Missense_Mutation_p.D146N|KIAA0748_uc010spb.1_Missense_Mutation_p.D146N|KIAA0748_uc010spc.1_Missense_Mutation_p.D261N|KIAA0748_uc010spd.1_Missense_Mutation_p.D399N|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	399										ovary(1)|central_nervous_system(1)	2						CACTGTGGATCTTCTATGGGC	0.517													27	103					0	0	1	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420360	55420360	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55420360G>A	uc001sgp.3	+	2	515	c.137G>A	c.(136-138)AGC>AAC	p.S46N		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	46					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						ATGCTCAGCAGCTTAACTGAA	0.413													18	43					0	0	1	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420389	55420389	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55420389G>A	uc001sgp.3	+	2	544	c.166G>A	c.(166-168)GAA>AAA	p.E56K		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	56	Asp/Glu-rich (acidic).				amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						CAGTATTgaggaagaagaaga	0.423													17	44					0	0	1	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420437	55420437	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55420437C>T	uc001sgp.3	+	2	592	c.214C>T	c.(214-216)CCC>TCC	p.P72S		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	72					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						GAGAAGGGGTCCCAAGAAAAA	0.428													10	39					0	0	1	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420498	55420498	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55420498C>T	uc001sgp.3	+	2	653	c.275C>T	c.(274-276)GCT>GTT	p.A92V		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	92	Basic motif.				amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						AGAGTCAAGGCTAATGCCAGA	0.473													22	76					0	0	1	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420762	55420762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55420762C>T	uc001sgp.3	+	2	917	c.539C>T	c.(538-540)TCT>TTT	p.S180F		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	180					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						GGCCCTCAGTCTGTCCTCCTG	0.537													26	68					0	0	1	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420887	55420887	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55420887C>T	uc001sgp.3	+	2	1042	c.664C>T	c.(664-666)CTT>TTT	p.L222F		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	222					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						AACACATCTCCTTCATCTCAA	0.498													26	70					0	0	1	0	0
NEUROD4	58158	broad.mit.edu	37	12	55421032	55421032	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55421032C>T	uc001sgp.3	+	2	1187	c.809C>T	c.(808-810)TCT>TTT	p.S270F		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	270					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						CAAGATGGGTCTCCTGACCTA	0.522													50	172					0	0	1	0	0
NEUROD4	58158	broad.mit.edu	37	12	55421210	55421210	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55421210C>T	uc001sgp.3	+	2	1365	c.987C>T	c.(985-987)TTC>TTT	p.F329F		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	329					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						ATACAGTCTTCACTGAGTGAG	0.428													161	300					0	0	1	0	0
OR9K2	441639	broad.mit.edu	37	12	55523928	55523928	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55523928C>T	uc010spe.1	+	1	376	c.376C>T	c.(376-378)CTC>TTC	p.L126F		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	126	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						TGTGGCCCAGCTCTTTCTCTT	0.468													18	152					0	0	1	0	0
OR10A7	121364	broad.mit.edu	37	12	55614818	55614818	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55614818G>A	uc010spf.1	+	1	10	c.10G>A	c.(10-12)GAA>AAA	p.E4K		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						TATGATCTGTGAAAATCACAC	0.313													28	168					0	0	1	0	0
OR10A7	121364	broad.mit.edu	37	12	55614869	55614869	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55614869C>T	uc010spf.1	+	1	61	c.61C>T	c.(61-63)CCC>TCC	p.P21S		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						TACAAACAACCCCGAGATGCA	0.373													33	233					0	0	1	0	0
OR10A7	121364	broad.mit.edu	37	12	55615307	55615307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55615307C>T	uc010spf.1	+	1	499	c.499C>T	c.(499-501)CCT>TCT	p.P167S		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						GATGGCCCTTCCTTTCTGTGG	0.478													34	96					0	0	1	0	0
OR10A7	121364	broad.mit.edu	37	12	55615680	55615680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55615680G>A	uc010spf.1	+	1	872	c.872G>A	c.(871-873)GGC>GAC	p.G291D		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	291	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						ATCATCTACGGCCTGAGGAAC	0.448													24	58					0	0	1	0	0
OR6C74	254783	broad.mit.edu	37	12	55641666	55641666	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55641666C>T	uc010spg.1	+	1	595	c.595C>T	c.(595-597)CTC>TTC	p.L199F		NM_001005490	NP_001005490	A6NCV1	O6C74_HUMAN	olfactory receptor, family 6, subfamily C,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AATGATGCTTCTCTCAGCCAT	0.393													26	74					0	0	1	0	0
OR6C6	283365	broad.mit.edu	37	12	55688082	55688082	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55688082C>T	uc010sph.1	-	1	935	c.935G>A	c.(934-936)AGA>AAA	p.R312K		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						TTAAAATGGTCTTTTAGAAAA	0.249													15	24					0	0	1	0	0
OR6C6	283365	broad.mit.edu	37	12	55688681	55688681	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55688681G>A	uc010sph.1	-	1	336	c.336C>T	c.(334-336)CTC>CTT	p.L112L		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						TGGCAGCCAGGAGGTAAAACT	0.393													31	57					0	0	1	0	0
OR6C1	390321	broad.mit.edu	37	12	55714563	55714563	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55714563C>T	uc010spi.1	+	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						TGTATTTCTTCCTCAGAAATT	0.418													33	80					0	0	1	0	0
OR6C3	254786	broad.mit.edu	37	12	55726102	55726102	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55726102C>T	uc010spj.1	+	1	618	c.618C>T	c.(616-618)TTC>TTT	p.F206F		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTTTGCTGTTCACTTTGGCAT	0.368													43	156					0	0	1	0	0
OR6C75	390323	broad.mit.edu	37	12	55758950	55758950	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55758950C>T	uc010spk.1	+	1	56	c.56C>T	c.(55-57)CCA>CTA	p.P19L		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						ACAAGTGACCCACAGTGGCAG	0.363													56	183					0	0	1	0	0
OR6C75	390323	broad.mit.edu	37	12	55759599	55759599	+	Silent	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55759599C>G	uc010spk.1	+	1	705	c.705C>G	c.(703-705)GCC>GCG	p.A235A		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						GGAAAAAAGCCTTTTCCACTT	0.393													27	52					0	0	1	0	0
OR6C65	403282	broad.mit.edu	37	12	55794837	55794837	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55794837C>T	uc010spl.1	+	1	525	c.525C>T	c.(523-525)TTC>TTT	p.F175F		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGACCATTTCATCTGTGATT	0.438													79	276					0	0	1	0	0
OR6C76	390326	broad.mit.edu	37	12	55820223	55820223	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55820223G>A	uc010spm.1	+	1	186	c.186G>A	c.(184-186)AGG>AGA	p.R62R		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTTCCTCAGGAATTTCTCCT	0.393													56	138					0	0	1	0	0
OR6C76	390326	broad.mit.edu	37	12	55820243	55820243	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55820243C>T	uc010spm.1	+	1	206	c.206C>T	c.(205-207)TCA>TTA	p.S69L		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGGAAATTTCATTTACTTCT	0.393													37	159					0	0	1	0	0
OR6C70	390327	broad.mit.edu	37	12	55863470	55863470	+	Silent	SNP	G	A	A	rs147384913		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55863470G>A	uc010spn.1	-	1	453	c.453C>T	c.(451-453)TTC>TTT	p.F151F		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F151F(1)		skin(1)	1						AAATGATCAGGAATCCAGTTA	0.368													24	60					0	0	1	0	0
OR6C4	341418	broad.mit.edu	37	12	55945863	55945863	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:55945863C>T	uc010spp.1	+	1	853	c.853C>T	c.(853-855)CCC>TCC	p.P285S		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTACTGAATCCCTTCATATA	0.348													22	64					0	0	1	0	0
OR10P1	121130	broad.mit.edu	37	12	56030715	56030715	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56030715C>T	uc010spq.1	+	1	40	c.40C>T	c.(40-42)CTT>TTT	p.L14F		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						TGAATTCCTCCTTCTGGGATT	0.522													42	88					0	0	1	0	0
OR10P1	121130	broad.mit.edu	37	12	56031306	56031306	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56031306C>T	uc010spq.1	+	1	631	c.631C>T	c.(631-633)CCC>TCC	p.P211S		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						CATTATGATCCCCTTCTCTCT	0.557													38	106					0	0	1	0	0
OR10P1	121130	broad.mit.edu	37	12	56031521	56031521	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56031521C>T	uc010spq.1	+	1	846	c.846C>T	c.(844-846)ATC>ATT	p.I282I		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						ACACAGTCATCACACCCATGC	0.582													17	69					0	0	1	0	0
METTL7B	196410	broad.mit.edu	37	12	56075728	56075728	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56075728G>A	uc010spr.1	+	1	399	c.190G>A	c.(190-192)GGG>AGG	p.G64R		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	64							methyltransferase activity				0						CCAGATAAAGGGGCTTACAGG	0.592													9	24					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56081758	56081758	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56081758C>T	uc001shh.2	-	24	3412	c.3192G>A	c.(3190-3192)TGG>TGA	p.W1064*	ITGA7_uc001shg.2_Nonsense_Mutation_p.W1060*|ITGA7_uc010sps.1_Nonsense_Mutation_p.W967*|ITGA7_uc001shf.2_Nonsense_Mutation_p.W38*|ITGA7_uc009znw.2_Nonsense_Mutation_p.W307*|ITGA7_uc009znx.2_Nonsense_Mutation_p.W941*	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	1104	Cytoplasmic (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GCCTCACCTTCCACAGGAGCA	0.577													49	151					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56088753	56088753	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56088753C>T	uc001shh.2	-	15	2237	c.2017G>A	c.(2017-2019)GAT>AAT	p.D673N	ITGA7_uc001shg.2_Missense_Mutation_p.D669N|ITGA7_uc010sps.1_Missense_Mutation_p.D576N|ITGA7_uc009znw.2_Intron|ITGA7_uc009znx.2_Missense_Mutation_p.D550N	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	713	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CCATCCACATCCCTGGAGAGT	0.612													14	29					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56089407	56089407	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56089407C>A	uc001shh.2	-	14	2134	c.1914G>T	c.(1912-1914)AAG>AAT	p.K638N	ITGA7_uc001shg.2_Missense_Mutation_p.K634N|ITGA7_uc010sps.1_Missense_Mutation_p.K541N|ITGA7_uc009znw.2_5'UTR|ITGA7_uc009znx.2_Missense_Mutation_p.K515N	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	678	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CACAGCCTTGCTTCAGGAAGT	0.572													20	57					1.10923e-09	1.11285e-09	1	1	0
ITGA7	3679	broad.mit.edu	37	12	56090698	56090698	+	Silent	SNP	G	A	A	rs142311782	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56090698G>A	uc001shh.2	-	12	1954	c.1734C>T	c.(1732-1734)GCC>GCT	p.A578A	ITGA7_uc001shg.2_Silent_p.A574A|ITGA7_uc010sps.1_Silent_p.A481A|ITGA7_uc009znw.2_5'Flank|ITGA7_uc009znx.2_Silent_p.A455A	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	618	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GCTGGAACATGGCGTCTCCAC	0.572													10	35					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56092314	56092314	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56092314C>T	uc001shh.2	-	7	1277	c.1057G>A	c.(1057-1059)GAA>AAA	p.E353K	ITGA7_uc001shg.2_Missense_Mutation_p.E349K|ITGA7_uc010sps.1_Missense_Mutation_p.E256K|ITGA7_uc009znw.2_5'Flank|ITGA7_uc009znx.2_Missense_Mutation_p.E236K	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	393	FG-GAP 5.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CCCAGCTCTTCTTGGCGCTCA	0.612													38	71					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56096685	56096685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56096685G>A	uc001shh.2	-	3	605	c.385C>T	c.(385-387)CGG>TGG	p.R129W	ITGA7_uc001shg.2_Missense_Mutation_p.R129W|ITGA7_uc010sps.1_Intron|ITGA7_uc009znx.2_Missense_Mutation_p.R16W	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	129	FG-GAP 2.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CCCTGGCTCCGAACACTGACT	0.448													15	82					0	0	1	0	0
CD63	967	broad.mit.edu	37	12	56121019	56121019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56121019G>A	uc001shm.2	-	2	267	c.171C>T	c.(169-171)ATC>ATT	p.I57I	CD63_uc009znz.2_Silent_p.I34I|CD63_uc001shn.2_Silent_p.I57I|CD63_uc001sho.2_Silent_p.I57I|CD63_uc001shp.2_Silent_p.I57I	NM_001780	NP_001771	P08962	CD63_HUMAN	CD63 antigen isoform A	57	Helical; (Potential).				platelet activation|platelet degranulation	integral to plasma membrane|late endosome membrane|lysosomal membrane|platelet dense granule membrane					0						CCACTGCGATGATGACCACTG	0.592													34	132					0	0	1	0	0
GDF11	10220	broad.mit.edu	37	12	56137461	56137461	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56137461G>A	uc001shq.2	+	1	398	c.361G>A	c.(361-363)GGC>AGC	p.G121S	GDF11_uc010spv.1_Missense_Mutation_p.G121S	NM_005811	NP_005802	O95390	GDF11_HUMAN	growth differentiation factor 11 precursor	121					growth|mesoderm development|skeletal system development	extracellular space	cytokine activity|growth factor activity			kidney(1)	1						CGACTTCCAGGGCGACGCGCT	0.667													16	19					0	0	1	0	0
MMP19	4327	broad.mit.edu	37	12	56235010	56235011	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56235010_56235011CC>TT	uc001sib.2	-	3	304_305	c.183_184GG>AA	c.(181-186)CAGGAA>CAAAAA	p.E62K	MMP19_uc001sia.2_5'Flank|MMP19_uc001sid.2_Intron|MMP19_uc010spw.1_Missense_Mutation_p.E62K	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	62					angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						TCAGATGCTTCCTGAAAAGCTC	0.53													22	55					0	0	1	0	0
MMP19	4327	broad.mit.edu	37	12	56236591	56236591	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56236591C>T	uc001sib.2	-	1	145	c.24G>A	c.(22-24)CTG>CTA	p.L8L	MMP19_uc001sia.2_5'Flank|MMP19_uc001sid.2_RNA|MMP19_uc010spw.1_Silent_p.L8L	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	8					angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						GTAGGAAGCCCAGCCACAGCT	0.637													3	10					0	0	1	0	0
WIBG	84305	broad.mit.edu	37	12	56295662	56295662	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56295662G>A	uc001sif.1	-	3	761	c.609C>T	c.(607-609)GGC>GGT	p.G203G	WIBG_uc001sie.1_Silent_p.G202G	NM_032345	NP_115721	Q9BRP8	WIBG_HUMAN	within bgcn homolog isoform 1	203	Potential.|eIF2A-like.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|exon-exon junction complex|nucleolus|nucleoplasm	protein binding|ribosome binding|RNA binding				0						GGCCTCAGAGGCCTAACTCCA	0.577													81	263					0	0	1	0	0
DGKA	1606	broad.mit.edu	37	12	56334725	56334725	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56334725C>T	uc001sij.2	+	13	1326	c.1062C>T	c.(1060-1062)ACC>ACT	p.T354T	DGKA_uc001sih.1_Silent_p.T242T|DGKA_uc001sii.1_Silent_p.T212T|DGKA_uc009zod.1_Silent_p.T273T|DGKA_uc001sik.2_Silent_p.T354T|DGKA_uc001sil.2_Silent_p.T354T|DGKA_uc001sim.2_Silent_p.T354T|DGKA_uc001sin.2_Silent_p.T354T|DGKA_uc009zof.2_5'UTR|DGKA_uc001sio.2_Silent_p.T96T	NM_001345	NP_001336	P23743	DGKA_HUMAN	diacylglycerol kinase, alpha 80kDa	354					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			ovary(3)|pancreas(1)	4					Vitamin E(DB00163)	GCCAGAAGACCATGGATGATT	0.493											OREG0021913	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	49					0	0	1	0	0
DGKA	1606	broad.mit.edu	37	12	56345462	56345462	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56345462G>A	uc001sij.2	+	18	1746	c.1482G>A	c.(1480-1482)GTG>GTA	p.V494V	DGKA_uc001sih.1_Silent_p.V382V|DGKA_uc001sii.1_Silent_p.V352V|DGKA_uc009zod.1_Silent_p.V413V|DGKA_uc001sik.2_Silent_p.V494V|DGKA_uc001sil.2_Silent_p.V494V|DGKA_uc001sim.2_Silent_p.V494V|DGKA_uc001sin.2_Silent_p.V494V|DGKA_uc009zof.2_Silent_p.V140V|DGKA_uc001sio.2_Silent_p.V236V	NM_001345	NP_001336	P23743	DGKA_HUMAN	diacylglycerol kinase, alpha 80kDa	494	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			ovary(3)|pancreas(1)	4					Vitamin E(DB00163)	TGAGTAAAGTGGTACATATGG	0.433													11	112					0	0	1	0	0
SUOX	6821	broad.mit.edu	37	12	56396389	56396389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56396389C>T	uc001six.2	+	5	439	c.113C>T	c.(112-114)CCC>CTC	p.P38L	SUOX_uc009zoh.2_Missense_Mutation_p.P38L|SUOX_uc001siy.2_Missense_Mutation_p.P38L|SUOX_uc001siz.2_Missense_Mutation_p.P38L|SUOX_uc001sja.2_Missense_Mutation_p.P38L	NM_000456	NP_000447	P51687	SUOX_HUMAN	sulfite oxidase precursor	38						mitochondrial intermembrane space	electron carrier activity|molybdenum ion binding|sulfite oxidase activity				0			UCEC - Uterine corpus endometrioid carcinoma (6;0.0471)|OV - Ovarian serous cystadenocarcinoma(18;0.119)			TCATTTCAGCCCCAGCGCCCC	0.537													51	128					0	0	1	0	0
IKZF4	64375	broad.mit.edu	37	12	56417497	56417497	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56417497C>T	uc001sjb.1	+	3	289	c.130C>T	c.(130-132)CCT>TCT	p.P44S	IKZF4_uc010sqa.1_Intron|IKZF4_uc001sjc.1_Missense_Mutation_p.P44S|IKZF4_uc001sjd.1_Intron|IKZF4_uc009zoi.1_Intron|IKZF4_uc001sje.1_5'Flank	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	44					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			GGATTTCTTGCCTCAGGCCCA	0.448													10	31					0	0	1	0	0
PA2G4	5036	broad.mit.edu	37	12	56504236	56504236	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56504236T>C	uc001sjm.2	+	8	1102	c.683T>C	c.(682-684)GTT>GCT	p.V228A	PA2G4_uc009zol.2_Missense_Mutation_p.V228A|PA2G4_uc009zom.2_Missense_Mutation_p.V228A	NM_006191	NP_006182	Q9UQ80	PA2G4_HUMAN	ErbB3-binding protein 1	228					cell cycle arrest|cell proliferation|negative regulation of transcription, DNA-dependent|regulation of translation|rRNA processing	cytoplasm|nucleolus|ribonucleoprotein complex	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding				0			OV - Ovarian serous cystadenocarcinoma(18;0.0739)			GCTGTGGATGTTCTCGTCAGC	0.388													38	66					0	0	1	0	0
PA2G4	5036	broad.mit.edu	37	12	56504387	56504387	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56504387C>T	uc001sjm.2	+	9	1172	c.753C>T	c.(751-753)CCC>CCT	p.P251P	PA2G4_uc009zol.2_Silent_p.P251P|PA2G4_uc009zom.2_Silent_p.P251P	NM_006191	NP_006182	Q9UQ80	PA2G4_HUMAN	ErbB3-binding protein 1	251					cell cycle arrest|cell proliferation|negative regulation of transcription, DNA-dependent|regulation of translation|rRNA processing	cytoplasm|nucleolus|ribonucleoprotein complex	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding				0			OV - Ovarian serous cystadenocarcinoma(18;0.0739)			AACGAGACCCCTCTAAACAGT	0.433													29	66					0	0	1	0	0
ESYT1	23344	broad.mit.edu	37	12	56524877	56524877	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56524877C>T	uc001sjq.2	+	4	671	c.621C>T	c.(619-621)ATC>ATT	p.I207I	ESYT1_uc001sjr.2_Silent_p.I207I	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	207						integral to membrane				ovary(4)|skin(1)	5						AAGAGCAGATCCTGCTGGACT	0.517													5	51					0	0	1	0	0
ESYT1	23344	broad.mit.edu	37	12	56525338	56525338	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56525338C>T	uc001sjq.2	+	6	842	c.792C>T	c.(790-792)TTC>TTT	p.F264F	ESYT1_uc001sjr.2_Silent_p.F264F	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	264	Helical; (Potential).					integral to membrane				ovary(4)|skin(1)	5						CAATGTTCTTCATCCGACGCC	0.537													49	140					0	0	1	0	0
ESYT1	23344	broad.mit.edu	37	12	56531834	56531834	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56531834C>T	uc001sjq.2	+	20	2273	c.2223C>T	c.(2221-2223)GTC>GTT	p.V741V	ESYT1_uc001sjr.2_Silent_p.V751V	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	741						integral to membrane				ovary(4)|skin(1)	5						TCACCACAGTCTTAAACAGTG	0.468													22	124					0	0	1	0	0
SMARCC2	6601	broad.mit.edu	37	12	56574793	56574793	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56574793G>A	uc001skb.2	-	11	1155	c.1049C>T	c.(1048-1050)CCC>CTC	p.P350L	SMARCC2_uc001skd.2_Missense_Mutation_p.P350L|SMARCC2_uc001ska.2_Missense_Mutation_p.P350L|SMARCC2_uc001skc.2_Missense_Mutation_p.P350L|SMARCC2_uc010sqf.1_Missense_Mutation_p.P239L	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	350					chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			TTCTACATTGGGGACTGGTGA	0.557													31	181					0	0	1	0	0
ANKRD52	283373	broad.mit.edu	37	12	56638911	56638912	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56638911_56638912GG>AA	uc001skm.3	-	22	2557_2558	c.2467_2468CC>TT	c.(2467-2469)CCC>TTC	p.P823F		NM_173595	NP_775866	Q8NB46	ANR52_HUMAN	ankyrin repeat domain 52	823	ANK 24.						protein binding			ovary(2)	2						AGGAGTGAAGGGGTTTCCTTCC	0.51													10	157					0	0	1	0	0
ANKRD52	283373	broad.mit.edu	37	12	56639294	56639294	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56639294G>A	uc001skm.3	-	21	2361	c.2271C>T	c.(2269-2271)CCC>CCT	p.P757P		NM_173595	NP_775866	Q8NB46	ANR52_HUMAN	ankyrin repeat domain 52	757	ANK 22.						protein binding			ovary(2)	2						CCAGGTGAATGGGCGTGCGGC	0.622													22	43					0	0	1	0	0
ANKRD52	283373	broad.mit.edu	37	12	56646657	56646657	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56646657G>A	uc001skm.3	-	12	1298	c.1208C>T	c.(1207-1209)TCA>TTA	p.S403L		NM_173595	NP_775866	Q8NB46	ANR52_HUMAN	ankyrin repeat domain 52	403							protein binding			ovary(2)	2						ATTGCTGAGTGAAGACACAAT	0.512													7	14					0	0	1	0	0
ANKRD52	283373	broad.mit.edu	37	12	56650809	56650809	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56650809G>A	uc001skm.3	-	4	341	c.251C>T	c.(250-252)TCC>TTC	p.S84F	ANKRD52_uc001skn.1_RNA	NM_173595	NP_775866	Q8NB46	ANR52_HUMAN	ankyrin repeat domain 52	84	ANK 3.						protein binding			ovary(2)	2						CTCGTTTCGGGAGGCAGCAGC	0.498													4	34					0	0	1	0	0
PAN2	9924	broad.mit.edu	37	12	56712110	56712110	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56712110G>A	uc001skx.2	-	25	3858	c.3485C>T	c.(3484-3486)TCT>TTT	p.S1162F	CNPY2_uc001sku.1_5'Flank|CNPY2_uc001skv.2_5'Flank|PAN2_uc001skw.2_Missense_Mutation_p.S310F|PAN2_uc001skz.2_Missense_Mutation_p.S1161F|PAN2_uc001sky.2_Missense_Mutation_p.S1158F	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	1162					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						CTTGTGGAAAGACTCAGGCTC	0.512													33	132					0	0	1	0	0
IL23A	51561	broad.mit.edu	37	12	56733246	56733246	+	Missense_Mutation	SNP	G	A	A	rs150940553		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56733246G>A	uc001sla.2	+	2	365	c.199G>A	c.(199-201)GAT>AAT	p.D67N		NM_016584	NP_057668	Q9NPF7	IL23A_HUMAN	interleukin 23, alpha subunit p19 precursor	67					defense response to Gram-negative bacterium|inflammatory response|innate immune response|negative regulation of interleukin-10 production|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to virus|tissue remodeling	interleukin-23 complex	cytokine activity				0						GACTACAAATGATGTTCCCCA	0.493													15	58					0	0	1	0	0
STAT2	6773	broad.mit.edu	37	12	56737280	56737280	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56737280G>A	uc001slc.2	-	24	2527	c.2449C>T	c.(2449-2451)CCG>TCG	p.P817S	STAT2_uc001slb.2_Missense_Mutation_p.P359S|STAT2_uc001sld.2_Missense_Mutation_p.P813S	NM_005419	NP_005410	P52630	STAT2_HUMAN	signal transducer and activator of transcription	817					interspecies interaction between organisms|JAK-STAT cascade|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						TCACCATTCGGCATGATTTCT	0.507													26	42					0	0	1	0	0
STAT2	6773	broad.mit.edu	37	12	56742738	56742738	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56742738G>A	uc001slc.2	-	17	1624	c.1546C>T	c.(1546-1548)CAG>TAG	p.Q516*	STAT2_uc001slb.2_Nonsense_Mutation_p.Q58*|STAT2_uc001sld.2_Nonsense_Mutation_p.Q512*|STAT2_uc010sqn.1_3'UTR	NM_005419	NP_005410	P52630	STAT2_HUMAN	signal transducer and activator of transcription	516					interspecies interaction between organisms|JAK-STAT cascade|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						ATGCTCAGCTGGTCTGAGTTG	0.552													16	67					0	0	1	0	0
STAT2	6773	broad.mit.edu	37	12	56742819	56742819	+	Missense_Mutation	SNP	G	A	A	rs149351309		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56742819G>A	uc001slc.2	-	17	1543	c.1465C>T	c.(1465-1467)CCC>TCC	p.P489S	STAT2_uc001slb.2_Missense_Mutation_p.P31S|STAT2_uc001sld.2_Missense_Mutation_p.P485S|STAT2_uc010sqn.1_3'UTR	NM_005419	NP_005410	P52630	STAT2_HUMAN	signal transducer and activator of transcription	489					interspecies interaction between organisms|JAK-STAT cascade|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						GGGGCCTTGGGGGGGTTGGAG	0.602													18	52					0	0	1	0	0
APOF	319	broad.mit.edu	37	12	56755842	56755842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56755842G>A	uc001sle.1	-	2	202	c.148C>T	c.(148-150)CCC>TCC	p.P50S		NM_001638	NP_001629	Q13790	APOF_HUMAN	apolipoprotein F precursor	50					cholesterol metabolic process	high-density lipoprotein particle|low-density lipoprotein particle	cholesterol binding|lipid transporter activity|receptor binding				0						AAGGACAAGGGAAAGTGCATC	0.517													23	118					0	0	1	0	0
TIMELESS	8914	broad.mit.edu	37	12	56822682	56822682	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56822682G>A	uc001slf.2	-	11	1457	c.1289C>T	c.(1288-1290)GCC>GTC	p.A430V	TIMELESS_uc001slg.2_Missense_Mutation_p.A429V	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	430					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TGCCCAGGAGGCAGCTTCCTT	0.522													29	44					0	0	1	0	0
MIP	4284	broad.mit.edu	37	12	56847402	56847402	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56847402G>A	uc001slh.2	-	2	530	c.498C>T	c.(496-498)TTC>TTT	p.F166F		NM_012064	NP_036196	P30301	MIP_HUMAN	major intrinsic protein of lens fiber	166	Helical; (By similarity).				response to stimulus|visual perception	gap junction|integral to plasma membrane	structural constituent of eye lens			skin(1)	1						GGGCAAGGGAGAAGCCAACGG	0.567													27	62					0	0	1	0	0
MIP	4284	broad.mit.edu	37	12	56847477	56847477	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56847477G>A	uc001slh.2	-	2	455	c.423C>T	c.(421-423)TTC>TTT	p.F141F		NM_012064	NP_036196	P30301	MIP_HUMAN	major intrinsic protein of lens fiber	141	Helical; (By similarity).				response to stimulus|visual perception	gap junction|integral to plasma membrane	structural constituent of eye lens			skin(1)	1						TGCAGAGCACGAACTGGAGCG	0.607													19	27					0	0	1	0	0
GLS2	27165	broad.mit.edu	37	12	56868895	56868895	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:56868895C>T	uc001slj.2	-	10	1209	c.930_splice	c.e10-1	p.T310_splice	GLS2_uc009zos.2_RNA|GLS2_uc001slk.2_Splice_Site_p.T45_splice|GLS2_uc009zot.2_Intron	NM_013267	NP_037399	Q9UI32	GLSL_HUMAN	glutaminase 2 precursor						cellular amino acid biosynthetic process|glutamate secretion|glutamine metabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity|protein binding			ovary(1)|central_nervous_system(1)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TGACTGGAATCTGAAGCAAAC	0.468													66	133					0	0	1	0	0
BAZ2A	11176	broad.mit.edu	37	12	57005376	57005376	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57005376G>A	uc001slq.1	-	7	1851	c.1657C>T	c.(1657-1659)CGT>TGT	p.R553C	BAZ2A_uc001slp.1_Missense_Mutation_p.R551C|BAZ2A_uc009zow.1_Missense_Mutation_p.R521C	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	553	MBD.				chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						AGGGGAAGACGAACTTCTTCT	0.418													12	29					0	0	1	0	0
ATP5B	506	broad.mit.edu	37	12	57032176	57032176	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57032176G>A	uc001slr.2	-	10	1626	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F	BAZ2A_uc001slq.1_5'Flank|BAZ2A_uc010sqr.1_5'Flank	NM_001686	NP_001677	P06576	ATPB_HUMAN	mitochondrial ATP synthase beta subunit	507					angiogenesis|ATP hydrolysis coupled proton transport|regulation of intracellular pH|respiratory electron transport chain	cell surface|mitochondrial nucleoid|mitochondrial proton-transporting ATP synthase, catalytic core|plasma membrane	ATP binding|eukaryotic cell surface binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|hydrogen-exporting ATPase activity, phosphorylative mechanism|MHC class I protein binding|proton-transporting ATPase activity, rotational mechanism			ovary(1)	1						CCACCATATAGAAGGCCTGTT	0.458													55	109					0	0	1	0	0
ATP5B	506	broad.mit.edu	37	12	57032929	57032929	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57032929G>A	uc001slr.2	-	9	1555	c.1450C>T	c.(1450-1452)CTG>TTG	p.L484L	BAZ2A_uc001slq.1_5'Flank|BAZ2A_uc010sqr.1_5'Flank	NM_001686	NP_001677	P06576	ATPB_HUMAN	mitochondrial ATP synthase beta subunit	484					angiogenesis|ATP hydrolysis coupled proton transport|regulation of intracellular pH|respiratory electron transport chain	cell surface|mitochondrial nucleoid|mitochondrial proton-transporting ATP synthase, catalytic core|plasma membrane	ATP binding|eukaryotic cell surface binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|hydrogen-exporting ATPase activity, phosphorylative mechanism|MHC class I protein binding|proton-transporting ATPase activity, rotational mechanism			ovary(1)	1						GTCTCCTTCAGGGGTACCAGC	0.483													69	108					0	0	1	0	0
SDR9C7	121214	broad.mit.edu	37	12	57324024	57324024	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57324024G>A	uc010sqw.1	-	2	546	c.546C>T	c.(544-546)TTC>TTT	p.F182F		NM_148897	NP_683695	Q8NEX9	DR9C7_HUMAN	short chain dehydrogenase/reductase family 9C,	182						cytoplasm	binding|oxidoreductase activity			central_nervous_system(1)	1						TGCTGTCAGAGAAGGCCTCAA	0.552													37	101					0	0	1	0	0
RDH16	8608	broad.mit.edu	37	12	57345840	57345840	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57345840G>A	uc001smi.3	-	4	1099	c.927C>T	c.(925-927)GTC>GTT	p.V309V	RDH16_uc009zpa.2_Silent_p.V164V	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	309	Helical; Anchor for type IV membrane protein; (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						GGCTTGGAGAGACCCAGTACA	0.547													14	44					0	0	1	0	0
RDH16	8608	broad.mit.edu	37	12	57348915	57348915	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57348915G>A	uc001smi.3	-	2	519	c.347C>T	c.(346-348)TCC>TTC	p.S116F	RDH16_uc009zpa.2_Intron	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	116	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						CGTGGGCAAGGAGATGCCAGC	0.552													18	24					0	0	1	0	0
TAC3	6866	broad.mit.edu	37	12	57409509	57409509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57409509C>T	uc001smp.2	-	2	233	c.73G>A	c.(73-75)GAG>AAG	p.E25K	TAC3_uc001smr.2_RNA|TAC3_uc001smq.2_RNA|TAC3_uc001smt.2_RNA|TAC3_uc001sms.2_RNA|TAC3_uc010sqy.1_RNA|TAC3_uc001smu.2_RNA|TAC3_uc001smv.2_RNA|TAC3_uc001smo.2_Missense_Mutation_p.E25K	NM_013251	NP_037383	Q9UHF0	TKNK_HUMAN	tachykinin 3 precursor	25					female pregnancy|neuropeptide signaling pathway|tachykinin receptor signaling pathway	extracellular space|soluble fraction	receptor binding			ovary(1)|skin(1)	2						TCCTGTGGCTCCTTACAGACA	0.597													15	60					0	0	1	0	0
MYO1A	4640	broad.mit.edu	37	12	57423014	57423014	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57423014G>A	uc001smw.3	-	27	3150	c.2907C>T	c.(2905-2907)TTC>TTT	p.F969F	MYO1A_uc010sqz.1_Silent_p.F807F|MYO1A_uc009zpd.2_Silent_p.F969F	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	969					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						TGACCAGCAGGAAGTCCCCCT	0.512													33	68					0	0	1	0	0
MYO1A	4640	broad.mit.edu	37	12	57430138	57430138	+	Missense_Mutation	SNP	G	A	A	rs143613424	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57430138G>A	uc001smw.3	-	22	2545	c.2302C>T	c.(2302-2304)CGG>TGG	p.R768W	MYO1A_uc010sqz.1_Missense_Mutation_p.R606W|MYO1A_uc009zpd.2_Missense_Mutation_p.R768W	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	768	IQ 3.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GCCTCTGACCGGAAATATTTG	0.468													49	154					0	0	1	0	0
MYO1A	4640	broad.mit.edu	37	12	57430866	57430866	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57430866G>A	uc001smw.3	-	20	2308	c.2065C>T	c.(2065-2067)CTC>TTC	p.L689F	MYO1A_uc010sqz.1_Missense_Mutation_p.L527F|MYO1A_uc009zpd.2_Missense_Mutation_p.L689F	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	689					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						TGTTCTTCGAGGTAGAAAAGC	0.572													21	89					0	0	1	0	0
MYO1A	4640	broad.mit.edu	37	12	57432321	57432321	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57432321G>A	uc001smw.3	-	17	1878	c.1635C>T	c.(1633-1635)TCC>TCT	p.S545S	MYO1A_uc010sqz.1_Silent_p.S383S|MYO1A_uc009zpd.2_Silent_p.S545S	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	545	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CAGGAAACAAGGACCGAAGGA	0.532													26	100					0	0	1	0	0
MYO1A	4640	broad.mit.edu	37	12	57437680	57437680	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57437680C>T	uc001smw.3	-	10	1095	c.852G>A	c.(850-852)CAG>CAA	p.Q284Q	MYO1A_uc010sqz.1_Silent_p.Q122Q|MYO1A_uc009zpd.2_Silent_p.Q284Q	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	284	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						TCCCACTGGCCTGGAACTCAT	0.552													15	36					0	0	1	0	0
MYO1A	4640	broad.mit.edu	37	12	57437748	57437748	+	Nonsense_Mutation	SNP	G	A	A	rs138607619		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57437748G>A	uc001smw.3	-	10	1027	c.784C>T	c.(784-786)CGA>TGA	p.R262*	MYO1A_uc010sqz.1_Nonsense_Mutation_p.R100*|MYO1A_uc009zpd.2_Nonsense_Mutation_p.R262*	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	262	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						AGCACTTGTCGAATCTCCTCC	0.517													29	66					0	0	1	0	0
TMEM194A	23306	broad.mit.edu	37	12	57453726	57453726	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57453726G>A	uc001smy.2	-	9	1317	c.1271C>T	c.(1270-1272)TCC>TTC	p.S424F	TMEM194A_uc001smx.2_Missense_Mutation_p.S351F|TMEM194A_uc010sra.1_Missense_Mutation_p.S165F	NM_001130963	NP_001124435	O14524	T194A_HUMAN	transmembrane protein 194A isoform a	424						integral to membrane					0						CTCCTCAGAGGATGCTTCCTC	0.473													19	36					0	0	1	0	0
STAT6	6778	broad.mit.edu	37	12	57496103	57496103	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57496103G>A	uc009zpe.2	-	13	1733	c.1482C>T	c.(1480-1482)CAC>CAT	p.H494H	STAT6_uc009zpf.2_Silent_p.H494H|STAT6_uc001sna.2_Silent_p.H494H|STAT6_uc010srb.1_Silent_p.H384H|STAT6_uc010src.1_Silent_p.H384H|STAT6_uc010srd.1_Silent_p.H384H|STAT6_uc009zpg.2_Silent_p.H543H	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	494					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						ACACAGAACGGTGCTGGAAGG	0.597													54	126					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57535160	57535160	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57535160C>T	uc001snd.2	+	3	660	c.194C>T	c.(193-195)CCA>CTA	p.P65L	LRP1_uc010sre.1_Missense_Mutation_p.P65L|LRP1_uc001snb.2_Missense_Mutation_p.P65L|LRP1_uc001snc.1_Missense_Mutation_p.P65L	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	65	LDL-receptor class A 1.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCCTCAGGTCCACAGAGTAAG	0.577													14	38					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57553764	57553764	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57553764C>T	uc001snd.2	+	12	2421	c.1955C>T	c.(1954-1956)GCT>GTT	p.A652V		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	652	LDL-receptor class B 5.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CACCCCAGGGCTATTGTGGTG	0.562													12	41					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57569316	57569316	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57569316C>T	uc001snd.2	+	23	4087	c.3621C>T	c.(3619-3621)TCC>TCT	p.S1207S		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1207	EGF-like 5.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TTGTGTGTTCCTGCCCTCTGG	0.582											OREG0021937	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	67					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57587458	57587458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57587458C>T	uc001snd.2	+	47	8260	c.7794C>T	c.(7792-7794)ATC>ATT	p.I2598I	MIR1228_hsa-mir-1228|MI0006318_5'Flank	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2598	Extracellular (Potential).|LDL-receptor class A 12.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CTGACGAGATCCCTTGCAACA	0.612													10	52					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57596994	57596994	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57596994C>T	uc001snd.2	+	69	11208	c.10742C>T	c.(10741-10743)TCC>TTC	p.S3581F		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3581	LDL-receptor class A 27.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	AGTGAGTTCTCCTGTGCCAAC	0.667													7	11					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57598915	57598915	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57598915C>T	uc001snd.2	+	73	11684	c.11218C>T	c.(11218-11220)CAC>TAC	p.H3740Y		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3740	LDL-receptor class A 31.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCACACCACCCACTGCAAAGA	0.612													23	66					0	0	1	0	0
NXPH4	11247	broad.mit.edu	37	12	57619175	57619175	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57619175C>T	uc010srf.1	+	2	747	c.572C>T	c.(571-573)CCC>CTC	p.P191L	NXPH4_uc009zpj.2_5'UTR	NM_007224	NP_009155	O95158	NXPH4_HUMAN	neurexophilin 4 precursor	191	IV (linker domain).				neuropeptide signaling pathway	extracellular region					0						GGGCTGGGGCCCCCGCTGGGG	0.756													20	40					0	0	1	0	0
NXPH4	11247	broad.mit.edu	37	12	57619434	57619434	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57619434C>T	uc010srf.1	+	2	1006	c.831C>T	c.(829-831)ATC>ATT	p.I277I	NXPH4_uc009zpj.2_Silent_p.I83I	NM_007224	NP_009155	O95158	NXPH4_HUMAN	neurexophilin 4 precursor	277	V (Cys-rich).				neuropeptide signaling pathway	extracellular region					0						TCAAAGTCATCTGTATCTTCG	0.572													16	68					0	0	1	0	0
NXPH4	11247	broad.mit.edu	37	12	57619443	57619443	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57619443C>T	uc010srf.1	+	2	1015	c.840C>T	c.(838-840)TTC>TTT	p.F280F	NXPH4_uc009zpj.2_Silent_p.F86F	NM_007224	NP_009155	O95158	NXPH4_HUMAN	neurexophilin 4 precursor	280	V (Cys-rich).				neuropeptide signaling pathway	extracellular region					0						TCTGTATCTTCGTCTCTTTCC	0.577													17	69					0	0	1	0	0
STAC3	246329	broad.mit.edu	37	12	57642935	57642935	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57642935C>T	uc001snp.2	-	3	418	c.223G>A	c.(223-225)GAG>AAG	p.E75K	STAC3_uc009zpl.2_Intron|STAC3_uc001snq.2_Missense_Mutation_p.E36K|STAC3_uc010srm.1_Intron	NM_145064	NP_659501	Q96MF2	STAC3_HUMAN	SH3 and cysteine rich domain 3	75	Poly-Glu.				intracellular signal transduction		identical protein binding|metal ion binding			ovary(2)|skin(1)	3						GGTGGctcctcctcctcctct	0.453													30	64					0	0	1	0	0
STAC3	246329	broad.mit.edu	37	12	57643365	57643365	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57643365G>A	uc001snp.2	-	2	250	c.55C>T	c.(55-57)CGG>TGG	p.R19W	R3HDM2_uc010srn.1_RNA|STAC3_uc009zpl.2_Intron|STAC3_uc001snq.2_Intron|STAC3_uc010srm.1_Intron	NM_145064	NP_659501	Q96MF2	STAC3_HUMAN	SH3 and cysteine rich domain 3	19					intracellular signal transduction		identical protein binding|metal ion binding			ovary(2)|skin(1)	3						CCACTTTGCCGAGTCTCTGCT	0.522													27	67					0	0	1	0	0
INHBC	3626	broad.mit.edu	37	12	57828693	57828693	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57828693C>T	uc001snv.1	+	1	151	c.24C>T	c.(22-24)GCC>GCT	p.A8A		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	8					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						TGCTTCTGGCCTTTCTCCTCC	0.602													7	39					0	0	1	0	0
INHBC	3626	broad.mit.edu	37	12	57828873	57828873	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57828873C>T	uc001snv.1	+	1	331	c.204C>T	c.(202-204)TCC>TCT	p.S68S		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	68					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						GCCCTGTGTCCAGAGCTGCTT	0.572													11	69					0	0	1	0	0
INHBC	3626	broad.mit.edu	37	12	57843461	57843461	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57843461G>A	uc001snv.1	+	2	842	c.715G>A	c.(715-717)GAC>AAC	p.D239N		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	239					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						ACGAGGCATCGACTGCCAAGG	0.587													15	26					0	0	1	0	0
INHBC	3626	broad.mit.edu	37	12	57843625	57843625	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57843625C>T	uc001snv.1	+	2	1006	c.879C>T	c.(877-879)TCC>TCT	p.S293S		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	293					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						TTGCTGCCTCCTTTCACACTG	0.602													6	67					0	0	1	0	0
INHBE	83729	broad.mit.edu	37	12	57849343	57849343	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57849343C>T	uc001snw.2	+	1	248	c.24C>T	c.(22-24)CTC>CTT	p.L8L		NM_031479	NP_113667	P58166	INHBE_HUMAN	activin beta E precursor	8					growth	extracellular region	growth factor activity|hormone activity			breast(2)|central_nervous_system(1)	3						ATGTCCAGCTCTGGCTGGTGC	0.632													7	37					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57859574	57859574	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57859574C>T	uc001snx.2	+	7	706	c.628C>T	c.(628-630)CCC>TCC	p.P210S	GLI1_uc009zpq.2_Missense_Mutation_p.P82S	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	210			P -> A (in a breast cancer sample; somatic mutation).		epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding	p.P210A(1)		skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			GCCCTAGGATCCCCTGTTGGG	0.557													32	89					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57863320	57863320	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57863320G>A	uc001snx.2	+	11	1493	c.1415G>A	c.(1414-1416)GGG>GAG	p.G472E	GLI1_uc009zpq.2_Missense_Mutation_p.G344E	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	472					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			GGCAATGCAGGGGGCAGCACT	0.612													23	87					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57864435	57864435	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57864435A>G	uc001snx.2	+	12	1990	c.1912A>G	c.(1912-1914)AGG>GGG	p.R638G	GLI1_uc009zpq.2_Missense_Mutation_p.R510G	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	638					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			GGTCACCCGGAGGGCCAGTGA	0.622													18	46					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57865164	57865164	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57865164C>T	uc001snx.2	+	12	2719	c.2641C>T	c.(2641-2643)CTG>TTG	p.L881L	GLI1_uc009zpq.2_Silent_p.L753L	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	881					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			CAGGCCTTGCCTGGACTTTGA	0.552													17	132					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57865728	57865728	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57865728G>A	uc001snx.2	+	12	3283	c.3205G>A	c.(3205-3207)GGC>AGC	p.G1069S	GLI1_uc009zpq.2_Missense_Mutation_p.G941S	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	1069					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			TGATCAGCGGGGCAGCTCTGG	0.572													16	198					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57865804	57865804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57865804C>T	uc001snx.2	+	12	3359	c.3281C>T	c.(3280-3282)TCC>TTC	p.S1094F	GLI1_uc009zpq.2_Missense_Mutation_p.S966F	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	1094					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding	p.S1094F(2)		skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			TTACTGAGATCCCTACCTGGG	0.532													30	94					0	0	1	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57868667	57868667	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57868667C>T	uc001sod.2	-	16	2105	c.1912G>A	c.(1912-1914)GAT>AAT	p.D638N	ARHGAP9_uc001sny.2_RNA|ARHGAP9_uc001snz.2_Missense_Mutation_p.D364N|ARHGAP9_uc001soa.2_Missense_Mutation_p.D237N|ARHGAP9_uc001sob.2_Missense_Mutation_p.D548N|ARHGAP9_uc001soc.2_Missense_Mutation_p.D548N|ARHGAP9_uc001soe.1_Missense_Mutation_p.D627N	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	567	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			CCTCTTTTATCCACAGCAGCA	0.532													16	65					0	0	1	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57871033	57871033	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57871033C>T	uc001sod.2	-	8	1182	c.989G>A	c.(988-990)GGG>GAG	p.G330E	ARHGAP9_uc001sny.2_5'Flank|ARHGAP9_uc001snz.2_Missense_Mutation_p.G75E|ARHGAP9_uc001soa.2_5'UTR|ARHGAP9_uc001sob.2_Missense_Mutation_p.G259E|ARHGAP9_uc001soc.2_Missense_Mutation_p.G259E|ARHGAP9_uc001soe.1_Missense_Mutation_p.G338E|ARHGAP9_uc010sro.1_Missense_Mutation_p.G259E	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	259					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			GGTCTGTGTCCCCTCCATGGA	0.542													8	50					0	0	1	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57872937	57872937	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57872937C>T	uc001sod.2	-	5	659	c.466G>A	c.(466-468)GAG>AAG	p.E156K	ARHGAP9_uc001snz.2_5'Flank|ARHGAP9_uc001soa.2_5'Flank|ARHGAP9_uc001sob.2_Missense_Mutation_p.E85K|ARHGAP9_uc001soc.2_Missense_Mutation_p.E85K|ARHGAP9_uc001soe.1_Missense_Mutation_p.E164K|ARHGAP9_uc010sro.1_Missense_Mutation_p.E85K	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	85	SH3.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			ATGGATTCCTCTATCATATAG	0.557													10	118					0	0	1	0	0
MARS	4141	broad.mit.edu	37	12	57883740	57883740	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57883740C>T	uc001sog.2	+	5	499	c.476C>T	c.(475-477)CCC>CTC	p.P159L	ARHGAP9_uc001sod.2_5'Flank|ARHGAP9_uc001soe.1_5'Flank|MARS_uc001sof.1_RNA|MARS_uc010srp.1_Intron|MARS_uc010srq.1_Intron	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	159	GST C-terminal.				methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	CTGCAAGATCCCGCCTACCTC	0.473													48	171					0	0	1	0	0
KIF5A	3798	broad.mit.edu	37	12	57963926	57963926	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:57963926A>T	uc001sor.1	+	12	1482	c.1274A>T	c.(1273-1275)TAT>TTT	p.Y425F	KIF5A_uc010srr.1_Missense_Mutation_p.Y336F	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	425					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						CGCCGTCTCTATAAGCAGCTT	0.572													7	16					0	0	1	0	0
DTX3	196403	broad.mit.edu	37	12	58000757	58000757	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:58000757G>A	uc001sow.1	+	5	448	c.111G>A	c.(109-111)CTG>CTA	p.L37L	DTX3_uc001sov.1_Silent_p.L30L|DTX3_uc001sox.1_Silent_p.L30L|DTX3_uc001soy.1_Silent_p.L30L	NM_178502	NP_848597	Q8N9I9	DTX3_HUMAN	deltex homolog 3	37					Notch signaling pathway	cytoplasm	zinc ion binding			breast(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					CAGCCCGGCTGGCCCGGCTTC	0.607													47	330					0	0	1	0	0
GEFT	115557	broad.mit.edu	37	12	58006880	58006880	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:58006880C>T	uc001spb.2	+	2	725	c.265C>T	c.(265-267)CTC>TTC	p.L89F	GEFT_uc009zpy.2_Missense_Mutation_p.L128F|GEFT_uc001soz.1_Intron|GEFT_uc001spa.2_5'UTR|uc001spc.2_RNA|GEFT_uc001spd.2_5'Flank	NM_182947	NP_891992	Q86VW2	ARHGP_HUMAN	RhoA/RAC/CDC42 exchange factor isoform 1	89					regulation of Rho protein signal transduction	cytosol|plasma membrane|sarcomere	Rho guanyl-nucleotide exchange factor activity				0	Melanoma(17;0.122)					CAAACATTGTCTCAGTGTGGA	0.468													4	33					0	0	1	0	0
SLC26A10	65012	broad.mit.edu	37	12	58014179	58014179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:58014179C>T	uc001spe.2	+	1	487	c.176C>T	c.(175-177)TCT>TTT	p.S59F	uc001spc.2_5'Flank|SLC26A10_uc001spf.2_RNA	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	59	Helical; (Potential).					integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					CTCTACACTTCTTTCTTCCCC	0.557													155	530					0	0	1	0	0
AGAP2	116986	broad.mit.edu	37	12	58125397	58125397	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:58125397C>T	uc001spq.2	-	9	1982	c.1982G>A	c.(1981-1983)CGA>CAA	p.R661Q	AGAP2_uc001spp.2_Missense_Mutation_p.R661Q|AGAP2_uc001spr.2_Missense_Mutation_p.R325Q	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	661					axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						ATCCAAGCTTCGTTTCTCGGA	0.532													6	59					0	0	1	0	0
AGAP2	116986	broad.mit.edu	37	12	58129186	58129186	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:58129186C>T	uc001spq.2	-	2	1193	c.1193G>A	c.(1192-1194)TGG>TAG	p.W398*	AGAP2_uc001spp.2_Nonsense_Mutation_p.W398*|AGAP2_uc001spr.2_Nonsense_Mutation_p.W62*	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	398					axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						GCTCAAAGTCCATTCCTGGCT	0.577													3	24					0	0	1	0	0
AGAP2	116986	broad.mit.edu	37	12	58131029	58131029	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:58131029C>T	uc001spq.2	-	1	1001	c.1001G>A	c.(1000-1002)GGG>GAG	p.G334E	AGAP2_uc001spp.2_Missense_Mutation_p.G334E|AGAP2_uc001spr.2_Intron	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	334	Interaction with PLCG1 (By similarity).				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						TGCTCGGCCCCCCTCCCGGCC	0.677													5	18					0	0	1	0	0
METTL1	4234	broad.mit.edu	37	12	58163367	58163367	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:58163367G>A	uc010ssd.1	-	4	602	c.554C>T	c.(553-555)GCC>GTC	p.A185V	CYP27B1_uc001spz.1_5'Flank|CYP27B1_uc001sqa.1_5'Flank|METTL1_uc009zqc.2_Silent_p.C123C	NM_005371	NP_005362	Q9UBP6	TRMB_HUMAN	methyltransferase-like protein 1 isoform a	185						cytoplasm|nucleus	protein binding|tRNA (guanine-N7-)-methyltransferase activity|tRNA binding				0	all_cancers(7;6.73e-81)|Lung NSC(6;1.07e-25)|all_lung(6;8.25e-24)|all_epithelial(6;4.6e-17)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.211)			TAGCACGTAGGCATATTCTGC	0.527													42	96					0	0	1	0	0
AVIL	10677	broad.mit.edu	37	12	58196037	58196037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:58196037C>T	uc001sqj.1	-	16	2086	c.2057G>A	c.(2056-2058)CGA>CAA	p.R686Q	AVIL_uc009zqe.1_Missense_Mutation_p.R679Q|AVIL_uc001sqk.1_Missense_Mutation_p.R264Q	NM_006576	NP_006567	O75366	AVIL_HUMAN	advillin	686	Core (By similarity).				actin filament capping|cilium morphogenesis|cytoskeleton organization|positive regulation of neuron projection development	actin cytoskeleton|axon|cytoplasm	actin binding			central_nervous_system(1)	1	Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					GTCGGGATCTCGGCCGCTGGG	0.557													19	26					0	0	1	0	0
AVIL	10677	broad.mit.edu	37	12	58197165	58197165	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:58197165C>T	uc001sqj.1	-	15	1856	c.1827G>A	c.(1825-1827)CAG>CAA	p.Q609Q	AVIL_uc009zqe.1_Silent_p.Q602Q|AVIL_uc001sqk.1_Silent_p.Q187Q	NM_006576	NP_006567	O75366	AVIL_HUMAN	advillin	609	Core (By similarity).				actin filament capping|cilium morphogenesis|cytoskeleton organization|positive regulation of neuron projection development	actin cytoskeleton|axon|cytoplasm	actin binding			central_nervous_system(1)	1	Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					CTAGGATTTCCTGCTGAAGTC	0.438											OREG0021955	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	66	125					0	0	1	0	0
LRIG3	121227	broad.mit.edu	37	12	59271314	59271314	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:59271314C>T	uc001sqr.2	-	15	2650	c.2404G>A	c.(2404-2406)GAT>AAT	p.D802N	LRIG3_uc009zqh.2_Missense_Mutation_p.D742N|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	802						integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			CATCCGTCATCGTCTAACGAT	0.572													21	40					0	0	1	0	0
LRIG3	121227	broad.mit.edu	37	12	59272864	59272864	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:59272864G>A	uc001sqr.2	-	14	2071	c.1825C>T	c.(1825-1827)CCC>TCC	p.P609S	LRIG3_uc009zqh.2_Missense_Mutation_p.P549S|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	609	Ig-like C2-type 2.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			AGATCCATGGGGGTCTTGGTG	0.527													19	30					0	0	1	0	0
SLC16A7	9194	broad.mit.edu	37	12	60165033	60165033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:60165033G>A	uc001sqs.2	+	4	550	c.251G>A	c.(250-252)GGC>GAC	p.G84D	SLC16A7_uc001sqt.2_Missense_Mutation_p.G84D|SLC16A7_uc001squ.2_Missense_Mutation_p.G84D|SLC16A7_uc009zqi.2_5'UTR|SLC16A7_uc010ssi.1_5'UTR	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	84	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	AATAAATACGGCAGCCGGCCG	0.443													28	188					0	0	1	0	0
SLC16A7	9194	broad.mit.edu	37	12	60168850	60168850	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:60168850C>T	uc001sqs.2	+	5	1073	c.774C>T	c.(772-774)TTC>TTT	p.F258F	SLC16A7_uc001sqt.2_Silent_p.F258F|SLC16A7_uc001squ.2_Silent_p.F258F|SLC16A7_uc009zqi.2_Silent_p.F159F|SLC16A7_uc010ssi.1_Silent_p.F159F	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	258	Helical; (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	TCATTATGTTCCTAGGTTTTT	0.363													8	107					0	0	1	0	0
USP15	9958	broad.mit.edu	37	12	62798036	62798036	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:62798036C>T	uc001src.1	+	22	2836	c.2827C>T	c.(2827-2829)CCT>TCT	p.P943S	USP15_uc001srb.1_Missense_Mutation_p.P914S	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	943					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		TGGCTTTTTTCCTCTTGACCG	0.378													42	171					0	0	1	0	0
MON2	23041	broad.mit.edu	37	12	62943454	62943454	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:62943454C>A	uc001sre.2	+	23	3151	c.2760C>A	c.(2758-2760)TCC>TCA	p.S920S	MON2_uc009zqj.2_Silent_p.S920S|MON2_uc010ssl.1_Silent_p.S848S|MON2_uc010ssm.1_Silent_p.S897S|MON2_uc010ssn.1_Silent_p.S920S|MON2_uc001srf.2_Silent_p.S683S	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	921					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		TCAGAGAATCCTTGATACGAA	0.269													14	103					1.15088e-07	1.15362e-07	1	1	0
MON2	23041	broad.mit.edu	37	12	62954404	62954404	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:62954404C>T	uc001sre.2	+	26	3934	c.3543C>T	c.(3541-3543)GAC>GAT	p.D1181D	MON2_uc009zqj.2_Silent_p.D1181D|MON2_uc010ssl.1_Silent_p.D1109D|MON2_uc010ssm.1_Silent_p.D1158D|MON2_uc010ssn.1_Silent_p.D1181D|MON2_uc001srf.2_Silent_p.D944D|MON2_uc001srg.2_Silent_p.D56D	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	1182					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		CTGTCAGAGACTCAGATAAGC	0.448													33	57					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	63359122	63359122	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:63359122C>T	uc001srn.1	+	1	23	c.18C>T	c.(16-18)TTC>TTT	p.F6F						SubName: Full=Putative uncharacterized protein RPL14P1;																		TCAGGCGCTTCGTGGAGGTTG	0.473													11	62					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	63359523	63359523	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:63359523C>T	uc001srn.1	+	1	424	c.419C>T	c.(418-420)CCC>CTC	p.P140L						SubName: Full=Putative uncharacterized protein RPL14P1;																		AAAGCTTCTCCCAAAAAAGCA	0.333													10	40					0	0	1	0	0
AVPR1A	552	broad.mit.edu	37	12	63541245	63541245	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:63541245C>T	uc001sro.1	-	2	3125	c.1151G>A	c.(1150-1152)AGA>AAA	p.R384K		NM_000706	NP_000697	P37288	V1AR_HUMAN	arginine vasopressin receptor 1A	384	Cytoplasmic (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|generation of precursor metabolites and energy	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity				0			BRCA - Breast invasive adenocarcinoma(9;0.193)	GBM - Glioblastoma multiforme(28;0.0569)	Conivaptan(DB00872)|Desmopressin(DB00035)|Felypressin(DB00093)|Terlipressin(DB02638)|Vasopressin(DB00067)	AAAAGTCTGTCTTCTGCTCAT	0.403													23	117					0	0	1	0	0
DPY19L2	283417	broad.mit.edu	37	12	63963095	63963095	+	Nonsense_Mutation	SNP	G	A	A	rs2942671		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:63963095G>A	uc001srp.1	-	21	2216	c.2035C>T	c.(2035-2037)CGA>TGA	p.R679*	DPY19L2_uc010sso.1_Nonsense_Mutation_p.R126*	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	679					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		GCAGATTTTCGACTATATGTA	0.254													31	102					0	0	1	0	0
DPY19L2	283417	broad.mit.edu	37	12	63974589	63974589	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:63974589G>A	uc001srp.1	-	19	1934	c.1753C>T	c.(1753-1755)CGT>TGT	p.R585C	DPY19L2_uc010sso.1_Missense_Mutation_p.R32C	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	585					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		TTCTCAAAACGAACTCTGCGA	0.358													13	59					0	0	1	0	0
TMEM5	10329	broad.mit.edu	37	12	64173857	64173857	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:64173857C>T	uc001srq.1	+	1	221	c.117C>T	c.(115-117)TCC>TCT	p.S39S	TMEM5_uc001srr.1_5'UTR|TMEM5_uc001srs.1_5'Flank	NM_014254	NP_055069	Q9Y2B1	TMEM5_HUMAN	transmembrane protein 5	39	Extracellular (Potential).					integral to plasma membrane					0		Myeloproliferative disorder(1001;0.0255)	BRCA - Breast invasive adenocarcinoma(9;0.0985)	GBM - Glioblastoma multiforme(28;9e-08)|BRCA - Breast invasive adenocarcinoma(357;0.000175)		cggccgggtccccgcggggcc	0.527													6	12					0	0	1	0	0
TMEM5	10329	broad.mit.edu	37	12	64202844	64202844	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:64202844G>A	uc001srq.1	+	6	1408	c.1304G>A	c.(1303-1305)AGC>AAC	p.S435N	TMEM5_uc001srr.1_Missense_Mutation_p.S332N|TMEM5_uc001srs.1_Missense_Mutation_p.S175N	NM_014254	NP_055069	Q9Y2B1	TMEM5_HUMAN	transmembrane protein 5	435	Extracellular (Potential).					integral to plasma membrane					0		Myeloproliferative disorder(1001;0.0255)	BRCA - Breast invasive adenocarcinoma(9;0.0985)	GBM - Glioblastoma multiforme(28;9e-08)|BRCA - Breast invasive adenocarcinoma(357;0.000175)		ATTTTAGAAAGCTCATTTTTA	0.249													8	34					0	0	1	0	0
C12orf56	115749	broad.mit.edu	37	12	64668681	64668681	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:64668681G>A	uc001ssa.3	-	9	1104	c.1104C>T	c.(1102-1104)ATC>ATT	p.I368I	uc001srx.2_Intron|C12orf56_uc001sry.2_Silent_p.I110I|C12orf56_uc001srz.2_Silent_p.I10I	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	531											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		AGATACTTACGATGGGAGGAC	0.373													24	61					0	0	1	0	0
C12orf56	115749	broad.mit.edu	37	12	64668705	64668705	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:64668705G>A	uc001ssa.3	-	9	1080	c.1080C>T	c.(1078-1080)TCC>TCT	p.S360S	uc001srx.2_Intron|C12orf56_uc001sry.2_Silent_p.S102S|C12orf56_uc001srz.2_Silent_p.S2S	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	523											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		TTTGTAGAAAGGACATTATCC	0.353													18	72					0	0	1	0	0
C12orf56	115749	broad.mit.edu	37	12	64746706	64746706	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:64746706G>A	uc001ssa.3	-	2	383	c.383C>T	c.(382-384)CCA>CTA	p.P128L	uc001srx.2_Intron	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	128											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		ATGATGAAATGGAAATAGGAA	0.313													15	46					0	0	1	0	0
C12orf56	115749	broad.mit.edu	37	12	64746713	64746713	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:64746713G>A	uc001ssa.3	-	2	376	c.376C>T	c.(376-378)CTA>TTA	p.L126L	uc001srx.2_Intron	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	126											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		AATGGAAATAGGAATTTCCTG	0.333													5	49					0	0	1	0	0
TBK1	29110	broad.mit.edu	37	12	64854024	64854024	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:64854024C>T	uc001ssc.1	+	3	205	c.143C>T	c.(142-144)CCA>CTA	p.P48L		NM_013254	NP_037386	Q9UHD2	TBK1_HUMAN	TANK-binding kinase 1	48	Protein kinase.				I-kappaB kinase/NF-kappaB cascade|innate immune response|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|large_intestine(1)|breast(1)	5				GBM - Glioblastoma multiforme(28;0.0386)		TTCCTTCGTCCAGTGGATGTT	0.269													32	62					0	0	1	0	0
MSRB3	253827	broad.mit.edu	37	12	65847522	65847522	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:65847522C>T	uc001ssn.2	+	5	389	c.328C>T	c.(328-330)CAC>TAC	p.H110Y	MSRB3_uc001ssm.2_Missense_Mutation_p.H103Y|MSRB3_uc009zqp.2_Missense_Mutation_p.H103Y	NM_198080	NP_932346	Q8IXL7	MSRB3_HUMAN	methionine sulfoxide reductase B3 isoform 1	110					protein repair	endoplasmic reticulum|mitochondrion	peptide-methionine-(S)-S-oxide reductase activity|protein-methionine-R-oxide reductase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.131)		GCCTTCATTCCACGATGTGAT	0.448													27	58					0	0	1	0	0
MSRB3	253827	broad.mit.edu	37	12	65857063	65857063	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:65857063G>A	uc001ssn.2	+	6	601	c.540G>A	c.(538-540)GGG>GGA	p.G180G	MSRB3_uc001ssm.2_Silent_p.G173G|MSRB3_uc009zqp.2_Silent_p.G173G	NM_198080	NP_932346	Q8IXL7	MSRB3_HUMAN	methionine sulfoxide reductase B3 isoform 1	180					protein repair	endoplasmic reticulum|mitochondrion	peptide-methionine-(S)-S-oxide reductase activity|protein-methionine-R-oxide reductase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.131)		GAGGCAGTGGGGTCGCCAGCC	0.502													14	44					0	0	1	0	0
IRAK3	11213	broad.mit.edu	37	12	66611005	66611005	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:66611005G>A	uc001sth.2	+	6	745	c.643G>A	c.(643-645)GTT>ATT	p.V215I	IRAK3_uc010ssy.1_Missense_Mutation_p.V154I	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	215	Protein kinase.				interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		TGAGCTTGAAGTTTTACTACT	0.363													167	658					0	0	1	0	0
IRAK3	11213	broad.mit.edu	37	12	66641931	66641931	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:66641931G>A	uc001sth.2	+	12	1873	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K	IRAK3_uc010ssy.1_Missense_Mutation_p.E530K	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	591					interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		GGATGAATATGAACAGTACAA	0.418													26	54					0	0	1	0	0
GRIP1	23426	broad.mit.edu	37	12	66859118	66859118	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:66859118G>A	uc001stk.2	-	8	1050	c.809C>T	c.(808-810)TCG>TTG	p.S270L	GRIP1_uc010sta.1_Missense_Mutation_p.S214L|GRIP1_uc001stj.2_5'UTR|GRIP1_uc001stl.1_Missense_Mutation_p.S214L|GRIP1_uc001stm.2_Missense_Mutation_p.S270L	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	270	PDZ 3.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		ACAGCACATCGAGGTAGTTAG	0.433													35	76					0	0	1	0	0
CAND1	55832	broad.mit.edu	37	12	67691229	67691229	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:67691229C>T	uc001stn.2	+	5	971	c.534C>T	c.(532-534)ACC>ACT	p.T178T	CAND1_uc001sto.2_5'Flank	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	178	HEAT 5.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		CAATTCTGACCTGTCTACTTC	0.393													74	176					0	0	1	0	0
CAND1	55832	broad.mit.edu	37	12	67703945	67703945	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:67703945C>T	uc001stn.2	+	13	3646	c.3209C>T	c.(3208-3210)CCA>CTA	p.P1070L	CAND1_uc001sto.2_Missense_Mutation_p.P580L	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	1070	HEAT 25.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		GAAATGGGTCCATTTAAACAT	0.353													21	152					0	0	1	0	0
IFNG	3458	broad.mit.edu	37	12	68552030	68552030	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:68552030G>A	uc001stw.1	-	2	250	c.124C>T	c.(124-126)CAT>TAT	p.H42Y		NM_000619	NP_000610	P01579	IFNG_HUMAN	interferon, gamma precursor	42					cell cycle arrest|interferon-gamma-mediated signaling pathway|negative regulation of interleukin-17 production|negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of metanephric nephron tubule epithelial cell differentiation|negative regulation of smooth muscle cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity|positive regulation of fructose 1,6-bisphosphate metabolic process|positive regulation of interleukin-12 production|positive regulation of interleukin-23 production|positive regulation of killing of cells of other organism|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mesenchymal cell proliferation|positive regulation of nitric oxide biosynthetic process|positive regulation of osteoclast differentiation|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of smooth muscle cell apoptosis|positive regulation of tumor necrosis factor (ligand) superfamily member 11 production|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of vitamin D biosynthetic process|protein import into nucleus, translocation|regulation of insulin secretion|regulation of interferon-gamma-mediated signaling pathway|response to virus	extracellular space	cytokine activity|interferon-gamma receptor binding				0			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000829)	Glucosamine(DB01296)|Interferon gamma-1b(DB00033)|Simvastatin(DB00641)	ACATCTGAATGACCTGCATTC	0.313													12	27					0	0	1	0	0
IL26	55801	broad.mit.edu	37	12	68619245	68619245	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:68619245C>T	uc001stx.1	-	2	242	c.207G>A	c.(205-207)AAG>AAA	p.K69K		NM_018402	NP_060872	Q9NPH9	IL26_HUMAN	interleukin 26 precursor	69					cell-cell signaling|negative regulation of epithelial cell proliferation|positive regulation of cytokine secretion|positive regulation of ERK1 and ERK2 cascade|positive regulation of JAK-STAT cascade|positive regulation of protein kinase B signaling cascade|positive regulation of stress-activated MAPK cascade|positive regulation of transcription from RNA polymerase II promoter	cytosol|extracellular space|soluble fraction	cytokine activity				0			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000515)		TTTTTGTTTTCTTTTTTAATA	0.279													9	36					0	0	1	0	0
IL26	55801	broad.mit.edu	37	12	68619438	68619438	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:68619438G>T	uc001stx.1	-	1	134	c.99C>A	c.(97-99)TAC>TAA	p.Y33*		NM_018402	NP_060872	Q9NPH9	IL26_HUMAN	interleukin 26 precursor	33					cell-cell signaling|negative regulation of epithelial cell proliferation|positive regulation of cytokine secretion|positive regulation of ERK1 and ERK2 cascade|positive regulation of JAK-STAT cascade|positive regulation of protein kinase B signaling cascade|positive regulation of stress-activated MAPK cascade|positive regulation of transcription from RNA polymerase II promoter	cytosol|extracellular space|soluble fraction	cytokine activity				0			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000515)		TTCCCCTTGGGTAACAACTTT	0.433													23	222					5.45024e-15	5.47503e-15	1	1	0
NUP107	57122	broad.mit.edu	37	12	69109411	69109411	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:69109411C>T	uc001suf.2	+	12	1089	c.974C>T	c.(973-975)CCT>CTT	p.P325L	NUP107_uc001sug.2_Missense_Mutation_p.P172L|NUP107_uc010stj.1_Missense_Mutation_p.P296L	NM_020401	NP_065134	P57740	NU107_HUMAN	nucleoporin 107kDa	325					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			skin(1)	1	Breast(13;6.25e-06)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00694)			TTACAGGACCCTGATGCTCCC	0.358													43	95					0	0	1	0	0
SLC35E3	55508	broad.mit.edu	37	12	69145889	69145889	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:69145889C>T	uc001suh.2	+	3	813	c.591C>T	c.(589-591)GCC>GCT	p.A197A		NM_018656	NP_061126	Q7Z769	S35E3_HUMAN	solute carrier family 35, member E2	197	Helical; (Potential).					integral to membrane					0	Breast(13;2.31e-06)|Renal(347;0.0684)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00372)			TGTCATCTGCCATGTTGCTGG	0.443													72	179					0	0	1	0	0
CPM	1368	broad.mit.edu	37	12	69264178	69264178	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:69264178C>T	uc001sup.2	-	5	494	c.433G>A	c.(433-435)GAA>AAA	p.E145K	CPM_uc001sur.2_Missense_Mutation_p.E145K|CPM_uc001suq.2_Missense_Mutation_p.E145K	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	145					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			TTATAATTTTCCCTTTAAAAG	0.403													13	46					0	0	1	0	0
CPM	1368	broad.mit.edu	37	12	69265641	69265641	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:69265641C>T	uc001sup.2	-	4	415	c.354G>A	c.(352-354)CGG>CGA	p.R118R	CPM_uc001sur.2_Silent_p.R118R|CPM_uc001suq.2_Silent_p.R118R	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	118					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			TGATGTGTATCCGGGTACTAT	0.463													33	109					0	0	1	0	0
CPSF6	11052	broad.mit.edu	37	12	69652691	69652691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:69652691C>T	uc001sut.3	+	6	1126	c.1016C>T	c.(1015-1017)CCT>CTT	p.P339L	CPSF6_uc001suu.3_Missense_Mutation_p.P376L|CPSF6_uc010stk.1_5'UTR	NM_007007	NP_008938	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6,	339	Pro-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			ACACTAGCTCCTCCTCCGCAT	0.627													41	172					0	0	1	0	0
CPSF6	11052	broad.mit.edu	37	12	69652866	69652866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:69652866C>T	uc001sut.3	+	6	1301	c.1191C>T	c.(1189-1191)CCC>CCT	p.P397P	CPSF6_uc001suu.3_Silent_p.P434P|CPSF6_uc010stk.1_Silent_p.P28P	NM_007007	NP_008938	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6,	397	Pro-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			ACTATGGCCCCCCTGGAAGGT	0.418													10	77					0	0	1	0	0
YEATS4	8089	broad.mit.edu	37	12	69756579	69756579	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:69756579C>T	uc001sux.2	+	2	284	c.63C>T	c.(61-63)ATC>ATT	p.I21I		NM_006530	NP_006521	O95619	YETS4_HUMAN	glioma-amplified sequence-41	21					histone H2A acetylation|histone H4 acetylation|mitosis|positive regulation of transcription, DNA-dependent|regulation of growth	NuA4 histone acetyltransferase complex|nuclear matrix	DNA binding|protein C-terminus binding|sequence-specific DNA binding transcription factor activity|structural constituent of cytoskeleton				0	all_epithelial(5;9.25e-35)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;6.89e-18)|BRCA - Breast invasive adenocarcinoma(5;3.14e-09)|Lung(24;9.68e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|OV - Ovarian serous cystadenocarcinoma(12;0.00691)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.24)|Kidney(9;0.241)			GTGTTACTATCGTTAAACCAA	0.308													21	60					0	0	1	0	0
FRS2	10818	broad.mit.edu	37	12	69965947	69965947	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:69965947C>T	uc001suy.2	+	9	972	c.462C>T	c.(460-462)CCC>CCT	p.P154P	FRS2_uc001suz.2_Silent_p.P154P|FRS2_uc009zrj.2_Silent_p.P154P|FRS2_uc009zrk.2_Silent_p.P154P	NM_006654	NP_006645	Q8WU20	FRS2_HUMAN	fibroblast growth factor receptor substrate 2	154					activation of MAPKK activity|activation of phospholipase C activity|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|transmembrane receptor protein tyrosine phosphatase signaling pathway	endomembrane system|endosome|integral to plasma membrane|membrane fraction	fibroblast growth factor receptor binding|insulin receptor binding|phosphatase activator activity|transmembrane receptor protein tyrosine kinase adaptor activity			prostate(1)|kidney(1)	2	Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.94e-18)|Lung(24;9.68e-05)|OV - Ovarian serous cystadenocarcinoma(12;0.000984)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			CCCGATATCCCTCATTTGGAG	0.483													25	79					0	0	1	0	0
LRRC10	376132	broad.mit.edu	37	12	70003892	70003892	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70003892C>T	uc001svc.2	-	1	1051	c.727G>A	c.(727-729)GAG>AAG	p.E243K		NM_201550	NP_963844	Q5BKY1	LRC10_HUMAN	leucine rich repeat containing 10	243						nucleus					0	all_cancers(2;2.83e-105)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;1.98e-18)|GBM - Glioblastoma multiforme(2;7.43e-12)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			TCTGGCGTCTCCTCTGCCCAT	0.582													15	63					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70048889	70048889	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70048889G>A	uc001svg.2	-	10	2032	c.1805C>T	c.(1804-1806)TCC>TTC	p.S602F	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.S389F|BEST3_uc010stm.1_Missense_Mutation_p.S496F	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	602	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GTTTCCCAGGGAAGTGTGGCT	0.498													24	37					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70049038	70049038	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70049038G>A	uc001svg.2	-	10	1883	c.1656C>T	c.(1654-1656)CCC>CCT	p.P552P	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Silent_p.P339P|BEST3_uc010stm.1_Silent_p.P446P	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	552	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CCTTCTCTGAGGGAGACAGGA	0.542													19	80					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70049412	70049412	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70049412C>T	uc001svg.2	-	10	1509	c.1282G>A	c.(1282-1284)GAC>AAC	p.D428N	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.D215N|BEST3_uc010stm.1_Missense_Mutation_p.D322N	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	428	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GGGCTGAGGTCATCTCGGGGT	0.592													25	90					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70087514	70087514	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70087514G>A	uc001svg.2	-	4	648	c.421C>T	c.(421-423)CGC>TGC	p.R141C	BEST3_uc001svd.1_Missense_Mutation_p.R141C|BEST3_uc001sve.1_RNA|BEST3_uc010stm.1_Missense_Mutation_p.R35C|BEST3_uc001svh.2_5'UTR|BEST3_uc001svi.1_RNA	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	141	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CTCACCGAGCGAAAGATGAGC	0.532													31	68					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70933619	70933619	+	Missense_Mutation	SNP	C	T	T	rs150844276	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70933619C>T	uc001swb.3	-	23	5060	c.5030G>A	c.(5029-5031)CGG>CAG	p.R1677Q	PTPRB_uc010sto.1_Missense_Mutation_p.R1587Q|PTPRB_uc010stp.1_Missense_Mutation_p.R1587Q|PTPRB_uc001swc.3_Missense_Mutation_p.R1895Q|PTPRB_uc001swa.3_Missense_Mutation_p.R1807Q	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1677	Cytoplasmic (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGAAGTTTTCCGGTTACTGTG	0.353													22	85					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70933760	70933760	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70933760C>T	uc001swb.3	-	22	5013	c.4983G>A	c.(4981-4983)AGG>AGA	p.R1661R	PTPRB_uc010sto.1_Silent_p.R1571R|PTPRB_uc010stp.1_Silent_p.R1571R|PTPRB_uc001swc.3_Silent_p.R1879R|PTPRB_uc001swa.3_Silent_p.R1791R	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1661	Cytoplasmic (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ATGGTCGATCCCTACGAATGC	0.408													16	36					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70933777	70933777	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70933777G>A	uc001swb.3	-	22	4996	c.4966C>T	c.(4966-4968)CGT>TGT	p.R1656C	PTPRB_uc010sto.1_Missense_Mutation_p.R1566C|PTPRB_uc010stp.1_Missense_Mutation_p.R1566C|PTPRB_uc001swc.3_Missense_Mutation_p.R1874C|PTPRB_uc001swa.3_Missense_Mutation_p.R1786C	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1656	Cytoplasmic (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ATGCTCAGACGGGCAGAGGGT	0.418													10	31					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70938397	70938397	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70938397C>T	uc001swb.3	-	20	4810	c.4780G>A	c.(4780-4782)GAA>AAA	p.E1594K	PTPRB_uc010sto.1_Missense_Mutation_p.E1504K|PTPRB_uc010stp.1_Missense_Mutation_p.E1504K|PTPRB_uc001swc.3_Missense_Mutation_p.E1812K|PTPRB_uc001swa.3_Missense_Mutation_p.E1724K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1594	Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTTGTGAATTCCTTCAGGTCC	0.363													12	46					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70946574	70946574	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70946574C>T	uc001swb.3	-	19	4746	c.4716G>A	c.(4714-4716)AAG>AAA	p.K1572K	PTPRB_uc010sto.1_Silent_p.K1482K|PTPRB_uc010stp.1_Silent_p.K1482K|PTPRB_uc001swc.3_Silent_p.K1790K|PTPRB_uc001swa.3_Silent_p.K1702K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1572	Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CAGTGTGTGGCTTCAGTGGTC	0.453													13	47					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70946680	70946680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70946680G>A	uc001swb.3	-	19	4640	c.4610C>T	c.(4609-4611)CCT>CTT	p.P1537L	PTPRB_uc010sto.1_Missense_Mutation_p.P1447L|PTPRB_uc010stp.1_Missense_Mutation_p.P1447L|PTPRB_uc001swc.3_Missense_Mutation_p.P1755L|PTPRB_uc001swa.3_Missense_Mutation_p.P1667L	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1537	Fibronectin type-III 17.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GTTGCTGTTAGGATTTTCGGC	0.468													28	93					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70946800	70946800	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70946800C>T	uc001swb.3	-	19	4520	c.4490G>A	c.(4489-4491)GGC>GAC	p.G1497D	PTPRB_uc010sto.1_Missense_Mutation_p.G1407D|PTPRB_uc010stp.1_Missense_Mutation_p.G1407D|PTPRB_uc001swc.3_Missense_Mutation_p.G1715D|PTPRB_uc001swa.3_Missense_Mutation_p.G1627D	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1497	Fibronectin type-III 17.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CTCATCACTGCCTGGAGGAGA	0.468													32	128					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70949081	70949081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70949081G>A	uc001swb.3	-	18	4378	c.4348C>T	c.(4348-4350)CCT>TCT	p.P1450S	PTPRB_uc010sto.1_Missense_Mutation_p.P1360S|PTPRB_uc010stp.1_Missense_Mutation_p.P1360S|PTPRB_uc001swc.3_Missense_Mutation_p.P1668S|PTPRB_uc001swa.3_Missense_Mutation_p.P1580S	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1450	Fibronectin type-III 17.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GGGGGTGGAGGAGGGGGGCCT	0.483													4	14					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70953127	70953128	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70953127_70953128CC>TT	uc001swb.3	-	16	4085_4086	c.4055_4056GG>AA	c.(4054-4056)AGG>AAA	p.R1352K	PTPRB_uc010sto.1_Missense_Mutation_p.R1262K|PTPRB_uc010stp.1_Missense_Mutation_p.R1262K|PTPRB_uc001swc.3_Missense_Mutation_p.R1570K|PTPRB_uc001swa.3_Missense_Mutation_p.R1482K|PTPRB_uc001swd.3_Missense_Mutation_p.R1569K|PTPRB_uc009zrr.1_Missense_Mutation_p.R1449K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1352	Fibronectin type-III 15.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TCATACTTGTCCTCACAGATCC	0.381													62	123					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70954525	70954525	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70954525C>T	uc001swb.3	-	15	3734	c.3704G>A	c.(3703-3705)GGA>GAA	p.G1235E	PTPRB_uc010sto.1_Missense_Mutation_p.G1145E|PTPRB_uc010stp.1_Missense_Mutation_p.G1145E|PTPRB_uc001swc.3_Missense_Mutation_p.G1453E|PTPRB_uc001swa.3_Missense_Mutation_p.G1365E|PTPRB_uc001swd.3_Missense_Mutation_p.G1452E|PTPRB_uc009zrr.1_Missense_Mutation_p.G1332E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1235	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GTACTTCCTTCCAGGAACAAG	0.498													15	43					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70954694	70954694	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70954694G>A	uc001swb.3	-	15	3565	c.3535C>T	c.(3535-3537)CTC>TTC	p.L1179F	PTPRB_uc010sto.1_Missense_Mutation_p.L1089F|PTPRB_uc010stp.1_Missense_Mutation_p.L1089F|PTPRB_uc001swc.3_Missense_Mutation_p.L1397F|PTPRB_uc001swa.3_Missense_Mutation_p.L1309F|PTPRB_uc001swd.3_Missense_Mutation_p.L1396F|PTPRB_uc009zrr.1_Missense_Mutation_p.L1276F	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1179	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GACCCCCTGAGATGACTCACA	0.453													51	88					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70956739	70956739	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70956739G>A	uc001swb.3	-	14	3429	c.3399C>T	c.(3397-3399)GAC>GAT	p.D1133D	PTPRB_uc010sto.1_Silent_p.D1043D|PTPRB_uc010stp.1_Silent_p.D1043D|PTPRB_uc001swc.3_Silent_p.D1351D|PTPRB_uc001swa.3_Silent_p.D1263D|PTPRB_uc001swd.3_Silent_p.D1350D|PTPRB_uc009zrr.1_Silent_p.D1230D	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1133	Fibronectin type-III 13.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GGACTAGTGGGTCAACTTGAG	0.498													17	75					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70960308	70960308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70960308C>T	uc001swb.3	-	13	3187	c.3157G>A	c.(3157-3159)GAA>AAA	p.E1053K	PTPRB_uc010sto.1_Intron|PTPRB_uc010stp.1_Missense_Mutation_p.E963K|PTPRB_uc001swc.3_Missense_Mutation_p.E1271K|PTPRB_uc001swa.3_Missense_Mutation_p.E1183K|PTPRB_uc001swd.3_Missense_Mutation_p.E1270K|PTPRB_uc009zrr.1_Missense_Mutation_p.E1150K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1053	Fibronectin type-III 12.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GTTAGATCTTCAAATTTGTGT	0.448													33	30					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70974910	70974910	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70974910G>A	uc001swb.3	-	8	1860	c.1830C>T	c.(1828-1830)TTC>TTT	p.F610F	PTPRB_uc010sto.1_Silent_p.F610F|PTPRB_uc010stp.1_Silent_p.F520F|PTPRB_uc001swc.3_Silent_p.F828F|PTPRB_uc001swa.3_Silent_p.F828F|PTPRB_uc001swd.3_Silent_p.F827F|PTPRB_uc009zrr.1_Silent_p.F707F	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	610	Fibronectin type-III 7.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGAGAGAGTGGAAGCTGTATC	0.473													49	113					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70974966	70974966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:70974966C>T	uc001swb.3	-	8	1804	c.1774G>A	c.(1774-1776)GAA>AAA	p.E592K	PTPRB_uc010sto.1_Missense_Mutation_p.E592K|PTPRB_uc010stp.1_Missense_Mutation_p.E502K|PTPRB_uc001swc.3_Missense_Mutation_p.E810K|PTPRB_uc001swa.3_Missense_Mutation_p.E810K|PTPRB_uc001swd.3_Missense_Mutation_p.E809K|PTPRB_uc009zrr.1_Missense_Mutation_p.E689K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	592	Fibronectin type-III 7.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ACCACATTTTCATGGATCAGT	0.463													42	137					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	71003055	71003055	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71003055G>A	uc001swb.3	-	2	149	c.119C>T	c.(118-120)TCT>TTT	p.S40F	PTPRB_uc010sto.1_Missense_Mutation_p.S40F|PTPRB_uc010stp.1_Missense_Mutation_p.S40F|PTPRB_uc001swc.3_Missense_Mutation_p.S258F|PTPRB_uc001swa.3_Missense_Mutation_p.S258F|PTPRB_uc001swd.3_Missense_Mutation_p.S257F|PTPRB_uc009zrr.1_Missense_Mutation_p.S137F|PTPRB_uc001swe.2_Missense_Mutation_p.S258F	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	40	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GATAGACACAGAATGGCTGGA	0.527													12	47					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	71003108	71003108	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71003108C>T	uc001swb.3	-	2	96	c.66G>A	c.(64-66)GCG>GCA	p.A22A	PTPRB_uc010sto.1_Silent_p.A22A|PTPRB_uc010stp.1_Silent_p.A22A|PTPRB_uc001swc.3_Silent_p.A240A|PTPRB_uc001swa.3_Silent_p.A240A|PTPRB_uc001swd.3_Silent_p.A239A|PTPRB_uc009zrr.1_Silent_p.A119A|PTPRB_uc001swe.2_Silent_p.A240A	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	22					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TCTCTGGCTCCGCCAGTCCAG	0.522													5	56					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	71016297	71016297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71016297C>T	uc001swc.3	-	3	625	c.581G>A	c.(580-582)AGA>AAA	p.R194K	PTPRB_uc001swa.3_Missense_Mutation_p.R194K|PTPRB_uc001swd.3_Missense_Mutation_p.R193K|PTPRB_uc009zrr.1_Missense_Mutation_p.R73K|PTPRB_uc001swe.2_Missense_Mutation_p.R194K	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGCAGCATTTCTGATGAAGGC	0.468													7	24					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71054852	71054852	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71054852T>A	uc001swi.1	-	12	2050	c.1634A>T	c.(1633-1635)AAG>ATG	p.K545M	PTPRR_uc001swf.1_RNA|PTPRR_uc001swg.1_RNA|PTPRR_uc001swh.1_Missense_Mutation_p.K300M|PTPRR_uc009zrs.2_Missense_Mutation_p.K394M|PTPRR_uc010stq.1_Missense_Mutation_p.K433M|PTPRR_uc010str.1_3'UTR	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	545	Tyrosine-protein phosphatase.|Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		CCAGTAATGCTTCACATGTTG	0.473													10	21					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71056346	71056346	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71056346C>T	uc001swi.1	-	11	1953	c.1537G>A	c.(1537-1539)GGA>AGA	p.G513R	PTPRR_uc001swf.1_RNA|PTPRR_uc001swg.1_RNA|PTPRR_uc001swh.1_Missense_Mutation_p.G268R|PTPRR_uc009zrs.2_Missense_Mutation_p.G362R|PTPRR_uc010stq.1_Missense_Mutation_p.G401R|PTPRR_uc010str.1_Missense_Mutation_p.G362R	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	513	Tyrosine-protein phosphatase.|Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TCAACTTTTCCATATATCCCT	0.373													15	56					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71092118	71092118	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71092118C>T	uc001swi.1	-	8	1622	c.1206G>A	c.(1204-1206)ATG>ATA	p.M402I	PTPRR_uc001swh.1_Missense_Mutation_p.M157I|PTPRR_uc009zrs.2_Missense_Mutation_p.M251I|PTPRR_uc010stq.1_Missense_Mutation_p.M290I|PTPRR_uc010str.1_Missense_Mutation_p.M251I	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	402	Tyrosine-protein phosphatase.|Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		CCACAAAGTTCATTGGTATTT	0.338													19	56					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71095058	71095058	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71095058C>T	uc001swi.1	-	7	1469	c.1053G>A	c.(1051-1053)GGG>GGA	p.G351G	PTPRR_uc001swh.1_Silent_p.G106G|PTPRR_uc009zrs.2_Silent_p.G200G|PTPRR_uc010stq.1_Silent_p.G239G|PTPRR_uc010str.1_Silent_p.G200G	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	351	Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		GTTCAATGTTCCCCAAGCTAC	0.438													20	80					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71139691	71139691	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71139691G>A	uc001swi.1	-	6	1330	c.914C>T	c.(913-915)CCT>CTT	p.P305L	PTPRR_uc001swh.1_Missense_Mutation_p.P60L|PTPRR_uc009zrs.2_Missense_Mutation_p.P154L|PTPRR_uc010stq.1_Missense_Mutation_p.P193L|PTPRR_uc010str.1_Missense_Mutation_p.P154L	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	305	Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TCGGCCTTGAGGGTCCACGAC	0.532													24	37					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71148051	71148051	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71148051C>T	uc001swi.1	-	5	1074	c.658G>A	c.(658-660)GAC>AAC	p.D220N	PTPRR_uc001swh.1_5'UTR|PTPRR_uc009zrs.2_Missense_Mutation_p.D69N|PTPRR_uc010stq.1_Missense_Mutation_p.D108N|PTPRR_uc010str.1_Missense_Mutation_p.D69N	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	220	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		CAGATTTTGTCCGCTTCATGC	0.358													19	39					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71155355	71155355	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71155355C>T	uc001swi.1	-	4	939	c.523G>A	c.(523-525)GGA>AGA	p.G175R	PTPRR_uc010stq.1_Missense_Mutation_p.G63R	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	175	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TCAGAAATTCCTGTTTTTCGG	0.343													34	137					0	0	1	0	0
TSPAN8	7103	broad.mit.edu	37	12	71531781	71531781	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71531781C>T	uc009zrt.1	-	5	558	c.396G>A	c.(394-396)GGG>GGA	p.G132G	TSPAN8_uc001swk.1_Silent_p.G132G|TSPAN8_uc001swj.1_Silent_p.G132G	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	132	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			TTTCACTTTCCCCTGTGGCGC	0.353													33	114					0	0	1	0	0
LGR5	8549	broad.mit.edu	37	12	71977544	71977544	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71977544C>T	uc001swl.2	+	18	1802	c.1754C>T	c.(1753-1755)TCC>TTC	p.S585F	LGR5_uc001swm.2_Missense_Mutation_p.S561F|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	585	Cytoplasmic (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						GTTTTCAGATCCCCTCTGTAC	0.502													36	117					0	0	1	0	0
LGR5	8549	broad.mit.edu	37	12	71977812	71977812	+	Silent	SNP	G	A	A	rs141274411		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71977812G>A	uc001swl.2	+	18	2070	c.2022G>A	c.(2020-2022)ACG>ACA	p.T674T	LGR5_uc001swm.2_Silent_p.T650T|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	674	Cytoplasmic (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						AATTTGAAACGAAAGCTCCAT	0.478													42	168					0	0	1	0	0
LGR5	8549	broad.mit.edu	37	12	71978050	71978050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:71978050G>A	uc001swl.2	+	18	2308	c.2260G>A	c.(2260-2262)GGA>AGA	p.G754R	LGR5_uc001swm.2_Missense_Mutation_p.G730R|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	754	Cytoplasmic (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TTTGGACAAGGGAGACCTGGA	0.483													19	129					0	0	1	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72022776	72022776	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:72022776G>A	uc001swo.2	-	20	4227	c.3868C>T	c.(3868-3870)CCA>TCA	p.P1290S		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	1290					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						CAAAACTTTGGCTTCCACTTT	0.308													10	42					0	0	1	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72036313	72036313	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:72036313G>A	uc001swo.2	-	6	1889	c.1530C>T	c.(1528-1530)TCC>TCT	p.S510S		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	510					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						GCTTATCTAAGGATCGCCTCA	0.373													42	146					0	0	1	0	0
TMEM19	55266	broad.mit.edu	37	12	72092736	72092736	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:72092736T>C	uc001sws.2	+	5	1277	c.694T>C	c.(694-696)TTT>CTT	p.F232L	TMEM19_uc001swr.1_Missense_Mutation_p.F218L|TMEM19_uc009zru.1_RNA	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19	232	Helical; (Potential).					integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		TGGTGGTACCTTTGTGGGCAT	0.453													61	104					0	0	1	0	0
TMEM19	55266	broad.mit.edu	37	12	72092798	72092798	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:72092798C>T	uc001sws.2	+	5	1339	c.756C>T	c.(754-756)GCC>GCT	p.A252A	TMEM19_uc001swr.1_Silent_p.A238A|TMEM19_uc009zru.1_RNA	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19	252						integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		ACATTTCTGCCCCGCAGTGGC	0.453													46	78					0	0	1	0	0
TBC1D15	64786	broad.mit.edu	37	12	72316862	72316862	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:72316862C>T	uc001swu.2	+	18	2029	c.2020C>T	c.(2020-2022)CCT>TCT	p.P674S	TBC1D15_uc010stt.1_Missense_Mutation_p.P643S|TBC1D15_uc001swv.2_Missense_Mutation_p.P657S|TBC1D15_uc001sww.2_Missense_Mutation_p.P406S	NM_022771	NP_073608	Q8TC07	TBC15_HUMAN	TBC1 domain family, member 15 isoform 1	652							protein binding|Rab GTPase activator activity				0						TGTCATGACTCCTTGTCCTAC	0.473													49	121					0	0	1	0	0
TPH2	121278	broad.mit.edu	37	12	72338188	72338188	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:72338188C>T	uc009zrw.1	+	3	511	c.370C>T	c.(370-372)CAG>TAG	p.Q124*	TPH2_uc001swy.2_Nonsense_Mutation_p.Q34*	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	124	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	TGAGCTCATTCAGTTGCTGAA	0.433													28	117					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	72667227	72667227	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:72667227G>A	uc001sxa.2	+	1	699	c.669G>A	c.(667-669)AGG>AGA	p.R223R	LOC283392_uc010stv.1_5'UTR	NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	223	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TGCTGAATAGGACACTGGACG	0.557													17	84					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	72680646	72680646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:72680646C>T	uc001sxa.2	+	2	995	c.965C>T	c.(964-966)TCA>TTA	p.S322L		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	322	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GATCACTTTTCACAGACCCCT	0.403													41	117					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	72969065	72969065	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:72969065G>A	uc001sxa.2	+	11	2057	c.2027G>A	c.(2026-2028)GGA>GAA	p.G676E		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	676	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTGGACAAAGGAAGCTGGCTG	0.333													25	57					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	73046169	73046169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:73046169G>A	uc001sxa.2	+	16	2638	c.2608G>A	c.(2608-2610)GAA>AAA	p.E870K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	870	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GGATGTCTGGGAATTCATATG	0.378													28	84					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	73056937	73056937	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:73056937G>A	uc001sxa.2	+	19	3067	c.3037G>A	c.(3037-3039)GAG>AAG	p.E1013K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	1013	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTACCAAGACGAGCTTTTCCA	0.393													12	36					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	73056942	73056942	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:73056942T>C	uc001sxa.2	+	19	3072	c.3042T>C	c.(3040-3042)CTT>CTC	p.L1014L		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	1014	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						AAGACGAGCTTTTCCAATGGT	0.393													16	31					0	0	1	0	0
KCNC2	3747	broad.mit.edu	37	12	75442037	75442037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:75442037G>A	uc001sxg.1	-	4	2220	c.1676C>T	c.(1675-1677)CCC>CTC	p.P559L	KCNC2_uc009zry.2_Missense_Mutation_p.P559L|KCNC2_uc001sxe.2_Missense_Mutation_p.P559L|KCNC2_uc001sxf.2_Intron|KCNC2_uc010stw.1_Intron	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	559	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						GCGTCTGATGGGGAGCCTTTC	0.507													49	67					0	0	1	0	0
KCNC2	3747	broad.mit.edu	37	12	75444658	75444658	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:75444658C>T	uc001sxg.1	-	3	1671	c.1127G>A	c.(1126-1128)CGA>CAA	p.R376Q	KCNC2_uc009zry.2_Missense_Mutation_p.R376Q|KCNC2_uc001sxe.2_Missense_Mutation_p.R376Q|KCNC2_uc001sxf.2_Missense_Mutation_p.R376Q|KCNC2_uc010stw.1_Missense_Mutation_p.R376Q	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	376	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						AGTACTAGCTCGAAGAGTATG	0.453													6	48					0	0	1	0	0
KCNC2	3747	broad.mit.edu	37	12	75601331	75601331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:75601331C>T	uc001sxg.1	-	2	977	c.433G>A	c.(433-435)GAG>AAG	p.E145K	KCNC2_uc009zry.2_Missense_Mutation_p.E145K|KCNC2_uc001sxe.2_Missense_Mutation_p.E145K|KCNC2_uc001sxf.2_Missense_Mutation_p.E145K|KCNC2_uc010stw.1_Missense_Mutation_p.E145K	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	145	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						ACGTCGGTCTCGTCGATGCCC	0.667													16	38					0	0	1	0	0
KCNC2	3747	broad.mit.edu	37	12	75601358	75601358	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:75601358C>T	uc001sxg.1	-	2	950	c.406G>A	c.(406-408)GAG>AAG	p.E136K	KCNC2_uc009zry.2_Missense_Mutation_p.E136K|KCNC2_uc001sxe.2_Missense_Mutation_p.E136K|KCNC2_uc001sxf.2_Missense_Mutation_p.E136K|KCNC2_uc010stw.1_Missense_Mutation_p.E136K	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	136	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						GCCAGCTCCTCCTCGAAGAGC	0.662													20	42					0	0	1	0	0
CAPS2	84698	broad.mit.edu	37	12	75683475	75683475	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:75683475C>T	uc001sxk.3	-	15	1575	c.1378G>A	c.(1378-1380)GAA>AAA	p.E460K	CAPS2_uc001sxm.3_Missense_Mutation_p.E228K|CAPS2_uc009zsa.2_Missense_Mutation_p.E50K|CAPS2_uc001sxi.3_Missense_Mutation_p.E196K|CAPS2_uc001sxj.3_Missense_Mutation_p.E371K|CAPS2_uc001sxl.3_Missense_Mutation_p.E441K	NM_032606	NP_115995	Q9BXY5	CAYP2_HUMAN	calcyphosine 2	460	1 (Potential).|EF-hand 1.						calcium ion binding			ovary(2)	2						CCATTTCCTTCCTTGTCCAAC	0.348													10	123					0	0	1	0	0
GLIPR1L1	256710	broad.mit.edu	37	12	75728596	75728596	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:75728596G>A	uc001sxo.2	+	1	134	c.88G>A	c.(88-90)GAC>AAC	p.D30N	CAPS2_uc001sxm.3_Intron|CAPS2_uc009zsa.2_Intron|GLIPR1L1_uc001sxn.2_Missense_Mutation_p.D30N	NM_152779	NP_689992	Q6UWM5	GPRL1_HUMAN	GLI pathogenesis-related 1 like 1	30						extracellular region					0						ATCCATCACTGACCCACACTT	0.463											OREG0021998	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	67					0	0	1	0	0
GLIPR1	11010	broad.mit.edu	37	12	75874745	75874745	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:75874745G>A	uc001sxs.2	+	1	233	c.85G>A	c.(85-87)GAA>AAA	p.E29K	GLIPR1_uc009zsb.1_Missense_Mutation_p.E29K	NM_006851	NP_006842	P48060	GLIP1_HUMAN	GLI pathogenesis-related 1 precursor	29					cellular lipid metabolic process	extracellular region|integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3						GCCAGATATCGAAAATGAAGA	0.403													14	76					0	0	1	0	0
KRR1	11103	broad.mit.edu	37	12	75897712	75897712	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:75897712G>A	uc001sxt.2	-	7	844	c.803C>T	c.(802-804)CCA>CTA	p.P268L	KRR1_uc009zsc.2_Intron	NM_007043	NP_008974	Q13601	KRR1_HUMAN	HIV-1 rev binding protein 2	268	Lys-rich.				rRNA processing	nucleolus|ribonucleoprotein complex	RNA binding			ovary(1)|pancreas(1)	2						TGGTGGGAATGGCGTATATTC	0.343													24	204					0	0	1	0	0
OSBPL8	114882	broad.mit.edu	37	12	76780412	76780412	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:76780412G>A	uc001sye.1	-	13	1861	c.1381C>T	c.(1381-1383)CGT>TGT	p.R461C	OSBPL8_uc001syf.1_Missense_Mutation_p.R419C|OSBPL8_uc001syg.1_Missense_Mutation_p.R419C|OSBPL8_uc001syh.1_Missense_Mutation_p.R436C	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	461					lipid transport		lipid binding			ovary(1)	1						TTCTTCAAACGGAAATAAGGA	0.274													13	121					0	0	1	0	0
E2F7	144455	broad.mit.edu	37	12	77419463	77419463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:77419463G>A	uc001sym.3	-	12	2676	c.2440C>T	c.(2440-2442)CCT>TCT	p.P814S	E2F7_uc009zse.2_Intron	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	814					cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						TGAAGCTGAGGGTCTGCAGAA	0.537													37	61					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78400326	78400326	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:78400326C>T	uc001syp.2	+	8	1181	c.1008C>T	c.(1006-1008)TCC>TCT	p.S336S	NAV3_uc001syo.2_Silent_p.S336S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	336						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GCAGCAAGTCCATGAATGTCA	0.562										HNSCC(70;0.22)			29	64					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78401191	78401191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:78401191C>T	uc001syp.2	+	8	2046	c.1873C>T	c.(1873-1875)CCG>TCG	p.P625S	NAV3_uc001syo.2_Missense_Mutation_p.P625S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	625						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ACATAGCCACCCGAATACCGC	0.478										HNSCC(70;0.22)			33	104					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78513213	78513213	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:78513213C>T	uc001syp.2	+	15	3410	c.3237C>T	c.(3235-3237)ATC>ATT	p.I1079I	NAV3_uc001syo.2_Silent_p.I1079I|NAV3_uc010sub.1_Silent_p.I579I|NAV3_uc009zsf.2_Silent_p.I87I	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1079	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CTGCCATGATCACCAGCAGTG	0.498										HNSCC(70;0.22)			6	72					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78513626	78513626	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:78513626C>T	uc001syp.2	+	15	3823	c.3650C>T	c.(3649-3651)TCC>TTC	p.S1217F	NAV3_uc001syo.2_Missense_Mutation_p.S1217F|NAV3_uc010sub.1_Missense_Mutation_p.S717F|NAV3_uc009zsf.2_Missense_Mutation_p.S225F	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1217	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						TTGTCAGGTTCCCCCAAATCC	0.522										HNSCC(70;0.22)			25	82					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78513721	78513722	+	Nonsense_Mutation	DNP	CG	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:78513721_78513722CG>TA	uc001syp.2	+	15	3918_3919	c.3745_3746CG>TA	c.(3745-3747)CGA>TAA	p.R1249*	NAV3_uc001syo.2_Nonsense_Mutation_p.R1249*|NAV3_uc010sub.1_Nonsense_Mutation_p.R749*|NAV3_uc009zsf.2_Nonsense_Mutation_p.R257*	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1249	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ACCCACATTTCGAAGGTAAGGA	0.351										HNSCC(70;0.22)			7	54					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78571017	78571017	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:78571017C>T	uc001syp.2	+	27	5394	c.5221C>T	c.(5221-5223)CCG>TCG	p.P1741S	NAV3_uc001syo.2_Missense_Mutation_p.P1741S|NAV3_uc010sub.1_Missense_Mutation_p.P1220S|NAV3_uc009zsf.2_Missense_Mutation_p.P572S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1741						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						TTCATCCCTTCCGGCATCCCC	0.473										HNSCC(70;0.22)			48	129					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78594328	78594328	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:78594328C>T	uc001syp.2	+	38	6964	c.6791C>T	c.(6790-6792)TCT>TTT	p.S2264F	NAV3_uc001syo.2_Missense_Mutation_p.S2242F|NAV3_uc010sub.1_Missense_Mutation_p.S1721F|NAV3_uc009zsf.2_Missense_Mutation_p.S1073F	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2264						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						TGGAACTATTCTTTAGTACCT	0.338										HNSCC(70;0.22)			36	69					0	0	1	0	0
SYT1	6857	broad.mit.edu	37	12	79693265	79693265	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:79693265G>A	uc001sys.2	+	9	1415	c.744G>A	c.(742-744)ATG>ATA	p.M248I	SYT1_uc001syt.2_Missense_Mutation_p.M248I|SYT1_uc001syu.2_Missense_Mutation_p.M245I|SYT1_uc001syv.2_Missense_Mutation_p.M248I	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	248	Cytoplasmic (Potential).|Phospholipid binding (Probable).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						AAGTCCCTATGAACACAGTGG	0.418													39	125					0	0	1	0	0
SYT1	6857	broad.mit.edu	37	12	79747293	79747293	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:79747293G>A	uc001sys.2	+	10	1493	c.822G>A	c.(820-822)TTG>TTA	p.L274L	SYT1_uc001syt.2_Silent_p.L274L|SYT1_uc001syu.2_Silent_p.L271L|SYT1_uc001syv.2_Silent_p.L274L	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	274	Cytoplasmic (Potential).|Phospholipid binding (Probable).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						AAGAGAAATTGGGTGATATCT	0.373													63	120					0	0	1	0	0
SYT1	6857	broad.mit.edu	37	12	79842818	79842818	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:79842818C>T	uc001sys.2	+	12	1854	c.1183C>T	c.(1183-1185)CTG>TTG	p.L395L	SYT1_uc001syt.2_Silent_p.L395L|SYT1_uc001syu.2_Silent_p.L392L|SYT1_uc001syv.2_Silent_p.L395L	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	395	Cytoplasmic (Potential).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						GTCAGACATGCTGGCCAACCC	0.547													17	39					0	0	1	0	0
PPP1R12A	4659	broad.mit.edu	37	12	80182511	80182511	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:80182511G>A	uc001syz.2	-	21	2986	c.2719C>T	c.(2719-2721)CGC>TGC	p.R907C	PPP1R12A_uc010suc.1_Missense_Mutation_p.R820C|PPP1R12A_uc001sza.2_Missense_Mutation_p.R851C|PPP1R12A_uc010sud.1_Missense_Mutation_p.R907C|PPP1R12A_uc001szb.2_Missense_Mutation_p.R907C|PPP1R12A_uc001syy.2_RNA	NM_002480	NP_002471	O14974	MYPT1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	907						contractile fiber	protein binding|signal transducer activity			ovary(2)|breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	7						GATCCAGAGCGACCCAGCAAG	0.353													7	23					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	80770937	80770937	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:80770937C>T	uc009zsg.1	+	12	1030	c.429C>T	c.(427-429)ATC>ATT	p.I143I	uc001szd.2_Silent_p.I282I					RecName: Full=Uncharacterized protein C12orf64;																		AGAAAGTGATCATTAAATCGG	0.308													10	32					0	0	1	0	0
MYF6	4618	broad.mit.edu	37	12	81101534	81101534	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81101534C>T	uc001szf.1	+	1	89	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	12					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GCTCCTATTTCTTCTACTTGG	0.493													36	88					0	0	1	0	0
MYF5	4617	broad.mit.edu	37	12	81110910	81110911	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81110910_81110911CC>TT	uc001szg.2	+	1	203_204	c.68_69CC>TT	c.(67-69)TCC>TTT	p.S23F		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	23					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						TGCATACCGTCCCCCGAGGGTG	0.619													14	41					0	0	1	0	0
MYF5	4617	broad.mit.edu	37	12	81110977	81110977	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81110977G>A	uc001szg.2	+	1	270	c.135G>A	c.(133-135)GAG>GAA	p.E45E		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	45					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						ACAAAGCAGAGCTGCAGGGCT	0.622													18	24					0	0	1	0	0
MYF5	4617	broad.mit.edu	37	12	81111096	81111096	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81111096G>A	uc001szg.2	+	1	389	c.254G>A	c.(253-255)CGG>CAG	p.R85Q		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	85	Basic motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						ATGGATCGGCGGAAGGCAGCC	0.627													15	32					0	0	1	0	0
LIN7A	8825	broad.mit.edu	37	12	81205386	81205386	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81205386C>T	uc001szj.1	-	5	753	c.560G>A	c.(559-561)CGA>CAA	p.R187Q	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	187	PDZ.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						TGGGGTGTATCGCACCACCAG	0.448													6	67					0	0	1	0	0
LIN7A	8825	broad.mit.edu	37	12	81239586	81239586	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81239586G>A	uc001szj.1	-	4	599	c.406C>T	c.(406-408)CGC>TGC	p.R136C	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	136	PDZ.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						GGAATTATGCGAGAGATATAA	0.473													20	71					0	0	1	0	0
LIN7A	8825	broad.mit.edu	37	12	81239646	81239646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81239646C>T	uc001szj.1	-	4	539	c.346G>A	c.(346-348)GAA>AAA	p.E116K	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	116	PDZ.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						CCAAGGCCTTCATCAGTCTTT	0.458													28	47					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81472121	81472121	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81472121G>A	uc001szl.1	+	1	313	c.222G>A	c.(220-222)GAG>GAA	p.E74E	ACSS3_uc001szm.1_Silent_p.E74E	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	74						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CCGACCCCGAGAGGTTCTGGG	0.647													6	64					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81532943	81532943	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81532943G>A	uc001szl.1	+	4	770	c.679G>A	c.(679-681)GAA>AAA	p.E227K	ACSS3_uc001szm.1_Missense_Mutation_p.E226K	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	227						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						ATTTGGCATTGAACCTGGAAG	0.338													22	64					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81545644	81545644	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81545644G>A	uc001szl.1	+	6	1034	c.943G>A	c.(943-945)GGA>AGA	p.G315R	ACSS3_uc001szm.1_Missense_Mutation_p.G314R|ACSS3_uc001szn.1_5'UTR	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	315						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GCCCACTGGGGGATACGCTGT	0.383													16	87					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81568677	81568677	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81568677G>A	uc001szl.1	+	8	1300	c.1209G>A	c.(1207-1209)CAG>CAA	p.Q403Q	ACSS3_uc001szm.1_Silent_p.Q402Q|ACSS3_uc001szn.1_Silent_p.Q85Q	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	403						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TCCGTCAACAGGACCCTGGGG	0.493													13	59					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81647096	81647096	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81647096C>T	uc001szl.1	+	14	1821	c.1730C>T	c.(1729-1731)TCC>TTC	p.S577F	ACSS3_uc001szm.1_Missense_Mutation_p.S576F|ACSS3_uc001szn.1_Missense_Mutation_p.S259F	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	577						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TCAATCCTTTCCCATGGTACC	0.328													26	199					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81647141	81647141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81647141C>T	uc001szl.1	+	14	1866	c.1775C>T	c.(1774-1776)CCC>CTC	p.P592L	ACSS3_uc001szm.1_Missense_Mutation_p.P591L|ACSS3_uc001szn.1_Missense_Mutation_p.P274L	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	592						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						AAGGAAGATCCCTTAAAAGGT	0.398													53	216					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81647354	81647354	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81647354C>T	uc001szl.1	+	15	1991	c.1900C>T	c.(1900-1902)CGA>TGA	p.R634*	ACSS3_uc001szm.1_Nonsense_Mutation_p.R633*|ACSS3_uc001szn.1_Nonsense_Mutation_p.R316*	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	634						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GGCTGCTTTTCGAAATGCAGT	0.428													21	93					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81648681	81648681	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81648681G>A	uc001szl.1	+	16	2132	c.2041G>A	c.(2041-2043)GAA>AAA	p.E681K	ACSS3_uc001szm.1_Missense_Mutation_p.E680K|ACSS3_uc001szn.1_Missense_Mutation_p.E363K	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	681						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CCACGTAGAAGAAATGCTGAA	0.308													27	89					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	81657081	81657081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81657081G>A	uc001szo.1	-	31	3805	c.3644C>T	c.(3643-3645)TCC>TTC	p.S1215F	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	1114										ovary(3)|lung(2)|pancreas(1)	6						TGTTTCTGAGGACCCAGGCAT	0.458													12	21					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	81661830	81661830	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81661830C>T	uc001szo.1	-	29	3508	c.3347G>A	c.(3346-3348)TGG>TAG	p.W1116*	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	1015										ovary(3)|lung(2)|pancreas(1)	6						TGCTTGTATCCAGCGAATAAC	0.363													6	7					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	81675169	81675169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81675169C>T	uc001szo.1	-	27	3240	c.3079G>A	c.(3079-3081)GAA>AAA	p.E1027K	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	926										ovary(3)|lung(2)|pancreas(1)	6						GGAAGCCATTCATTTCCAATC	0.393													29	81					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	81675180	81675180	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81675180C>T	uc001szo.1	-	27	3229	c.3068G>A	c.(3067-3069)TGG>TAG	p.W1023*	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	922										ovary(3)|lung(2)|pancreas(1)	6						ATTTCCAATCCACTCATGATT	0.388													27	88					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	81719638	81719638	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81719638C>T	uc001szo.1	-	22	2721	c.2560G>A	c.(2560-2562)GAG>AAG	p.E854K	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	780										ovary(3)|lung(2)|pancreas(1)	6						GCTTCAGTCTCCATAAAGCCT	0.423													9	36					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	81769583	81769583	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:81769583G>A	uc001szo.1	-	10	1284	c.1123C>T	c.(1123-1125)CTG>TTG	p.L375L	PPFIA2_uc010sue.1_Silent_p.L275L|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	301										ovary(3)|lung(2)|pancreas(1)	6						ACCTGCCGCAGGATAGCTTCT	0.398													11	27					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	82147756	82147756	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:82147756G>A	uc001szo.1	-	3	406	c.245C>T	c.(244-246)CCA>CTA	p.P82L	PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(3)|lung(2)|pancreas(1)	6						GCATACCTGTGGCAGGGCTGA	0.443													9	19					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	82147811	82147811	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:82147811G>A	uc001szo.1	-	3	351	c.190C>T	c.(190-192)CAG>TAG	p.Q64*	PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	323										ovary(3)|lung(2)|pancreas(1)	6						ATGACATCCTGAAGTCTTTGC	0.483													4	36					0	0	1	0	0
SLC6A15	55117	broad.mit.edu	37	12	85260961	85260961	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:85260961G>A	uc001szv.2	-	10	2000	c.1507C>T	c.(1507-1509)CTT>TTT	p.L503F	SLC6A15_uc010sul.1_Missense_Mutation_p.L396F|SLC6A15_uc001szw.1_Missense_Mutation_p.L211F|uc001szx.2_5'Flank	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	503	Helical; Name=9; (Potential).				cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3						AATGCCAGAAGACAACAGATA	0.294													25	63					0	0	1	0	0
SLC6A15	55117	broad.mit.edu	37	12	85266876	85266876	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:85266876A>T	uc001szv.2	-	7	1592	c.1099T>A	c.(1099-1101)TGC>AGC	p.C367S	SLC6A15_uc010sul.1_Missense_Mutation_p.C260S|SLC6A15_uc001szw.1_Missense_Mutation_p.C75S	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	367	Extracellular (Potential).				cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3						TGTGTAATGCATTTCTCATTT	0.289													23	67					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85432029	85432029	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:85432029A>C	uc001tac.2	+	2	186	c.75A>C	c.(73-75)GAA>GAC	p.E25D	LRRIQ1_uc001tab.1_Missense_Mutation_p.E25D|TSPAN19_uc009zsj.2_5'Flank|LRRIQ1_uc001taa.1_Missense_Mutation_p.E25D|LRRIQ1_uc001tad.2_5'Flank	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	25										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		CCTCCTTGGAAAAAGAAGACA	0.373													11	97					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85434298	85434298	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:85434298C>T	uc001tac.2	+	3	274	c.163C>T	c.(163-165)CAC>TAC	p.H55Y	LRRIQ1_uc001tab.1_Missense_Mutation_p.H55Y|LRRIQ1_uc001taa.1_Missense_Mutation_p.H55Y|LRRIQ1_uc001tad.2_5'UTR	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	55										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		ATCAGTTCTTCACTGTATTAA	0.303													23	92					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85450471	85450471	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:85450471G>A	uc001tac.2	+	8	2011	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	LRRIQ1_uc001tab.1_Missense_Mutation_p.E634K|LRRIQ1_uc001taa.1_Missense_Mutation_p.E609K	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	634										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		ACAAGAAAAAGAAATTTATTC	0.294													8	30					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85500354	85500354	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:85500354C>T	uc001tac.2	+	15	3449	c.3338C>T	c.(3337-3339)TCT>TTT	p.S1113F	LRRIQ1_uc001tab.1_Missense_Mutation_p.S1113F	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1113										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		CATGAATTGTCTCTTACTGGA	0.338													25	83					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85518140	85518140	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:85518140G>A	uc001tac.2	+	17	3961	c.3850G>A	c.(3850-3852)GAA>AAA	p.E1284K	LRRIQ1_uc001tab.1_Missense_Mutation_p.E1284K	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1284										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		CGCCACATGTGAAAATATGGA	0.448													66	121					0	0	1	0	0
RASSF9	9182	broad.mit.edu	37	12	86198601	86198601	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:86198601G>A	uc001taf.1	-	2	1526	c.1187C>T	c.(1186-1188)CCC>CTC	p.P396L		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	396					endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						TTGAGTAAAGGGAGGAATCTC	0.428													17	122					0	0	1	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373155	86373155	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:86373155G>A	uc001tai.3	-	8	2599	c.1349C>T	c.(1348-1350)CCA>CTA	p.P450L	MGAT4C_uc001tal.3_Missense_Mutation_p.P450L|MGAT4C_uc001taj.3_Missense_Mutation_p.P450L|MGAT4C_uc001tak.3_Missense_Mutation_p.P450L|MGAT4C_uc010sum.1_Missense_Mutation_p.P474L|MGAT4C_uc001tah.3_Missense_Mutation_p.P450L	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	450	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TATATCAAATGGAATTTTTTG	0.313													10	48					0	0	1	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373732	86373732	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:86373732C>T	uc001tai.3	-	8	2022	c.772G>A	c.(772-774)GGC>AGC	p.G258S	MGAT4C_uc001tal.3_Missense_Mutation_p.G258S|MGAT4C_uc001taj.3_Missense_Mutation_p.G258S|MGAT4C_uc001tak.3_Missense_Mutation_p.G258S|MGAT4C_uc010sum.1_Missense_Mutation_p.G282S|MGAT4C_uc001tah.3_Missense_Mutation_p.G258S	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	258	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						CCAATGTAGCCAAGCTTAGAG	0.363													17	79					0	0	1	0	0
C12orf50	160419	broad.mit.edu	37	12	88376921	88376921	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:88376921G>A	uc001tam.1	-	12	1346	c.1178C>T	c.(1177-1179)CCT>CTT	p.P393L		NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	393										skin(2)|ovary(1)	3						TTTTGAAAAAGGAATTCGTTT	0.259													23	119					0	0	1	0	0
C12orf50	160419	broad.mit.edu	37	12	88379651	88379651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:88379651C>T	uc001tam.1	-	11	1270	c.1102G>A	c.(1102-1104)GAA>AAA	p.E368K	C12orf50_uc001tan.2_Missense_Mutation_p.E383K	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	368										skin(2)|ovary(1)	3						GGTTTGGGTTCCCTGTTAGCA	0.498													30	98					0	0	1	0	0
C12orf50	160419	broad.mit.edu	37	12	88379792	88379792	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:88379792G>A	uc001tam.1	-	11	1129	c.961C>T	c.(961-963)CAC>TAC	p.H321Y	C12orf50_uc001tan.2_Missense_Mutation_p.H336Y	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	321										skin(2)|ovary(1)	3						TTATTGCGGTGATAACTCATT	0.453													10	121					0	0	1	0	0
C12orf50	160419	broad.mit.edu	37	12	88380164	88380164	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:88380164G>A	uc001tam.1	-	10	1015	c.847C>T	c.(847-849)CAT>TAT	p.H283Y	C12orf50_uc001tan.2_Missense_Mutation_p.H298Y	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	283										skin(2)|ovary(1)	3						CCTTTAAAATGAGGCTTCTTC	0.323													18	43					0	0	1	0	0
C12orf50	160419	broad.mit.edu	37	12	88420335	88420335	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:88420335C>T	uc001tam.1	-	3	231	c.63G>A	c.(61-63)GTG>GTA	p.V21V	C12orf50_uc001tan.2_Silent_p.V75V	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	21										skin(2)|ovary(1)	3						AGCTGATCTTCACACAACCAA	0.368													7	78					0	0	1	0	0
KITLG	4254	broad.mit.edu	37	12	88910190	88910190	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:88910190G>A	uc001tav.2	-	5	624	c.441C>T	c.(439-441)TCC>TCT	p.S147S	KITLG_uc009zsn.2_Intron|KITLG_uc001taw.2_Silent_p.S147S|KITLG_uc009zso.1_Intron	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	147	Extracellular (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						AGGCATCAATGGATCTATTAA	0.358									Testicular_Cancer_Familial_Clustering_of				22	73					0	0	1	0	0
KITLG	4254	broad.mit.edu	37	12	88910219	88910219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:88910219C>T	uc001tav.2	-	5	595	c.412G>A	c.(412-414)GAA>AAA	p.E138K	KITLG_uc009zsn.2_Intron|KITLG_uc001taw.2_Missense_Mutation_p.E138K|KITLG_uc009zso.1_Intron	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	138	Extracellular (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						AAGAATTCTTCAGGAGTAAAG	0.343									Testicular_Cancer_Familial_Clustering_of				12	68					0	0	1	0	0
KITLG	4254	broad.mit.edu	37	12	88926235	88926235	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:88926235G>A	uc001tav.2	-	3	358	c.175C>T	c.(175-177)CCC>TCC	p.P59S	KITLG_uc001taw.2_Missense_Mutation_p.P59S|KITLG_uc009zso.1_RNA	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	59	Extracellular (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						TCCATCCCGGGGACATATTTG	0.328									Testicular_Cancer_Familial_Clustering_of				39	116					0	0	1	0	0
GALNT4	8693	broad.mit.edu	37	12	89916702	89916703	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:89916702_89916703GG>AA	uc001tbd.2	-	1	1833_1834	c.1624_1625CC>TT	c.(1624-1626)CCA>TTA	p.P542L	POC1B_uc001tba.2_Intron|POC1B_uc001tbb.2_Intron|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Missense_Mutation_p.P539L|GALNT4_uc010suo.1_Missense_Mutation_p.P234L	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4	542	Ricin B-type lectin.|Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						TCCTGAGTGTGGGTGAAAAATA	0.401													8	78					0	0	1	0	0
ATP2B1	490	broad.mit.edu	37	12	89998001	89998001	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:89998001G>A	uc001tbh.2	-	15	2746	c.2565C>T	c.(2563-2565)TTC>TTT	p.F855F	ATP2B1_uc001tbg.2_Silent_p.F855F|ATP2B1_uc001tbf.2_Silent_p.F525F	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	855	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						GGAACTGAAGGAATTTTGAGA	0.383													22	52					0	0	1	0	0
ATP2B1	490	broad.mit.edu	37	12	90010762	90010762	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:90010762G>A	uc001tbh.2	-	11	2065	c.1884C>T	c.(1882-1884)GAC>GAT	p.D628D	ATP2B1_uc001tbg.2_Silent_p.D628D|ATP2B1_uc001tbf.2_Silent_p.D298D	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	628	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TATCATCACGGTCCCTTGGTC	0.368													17	106					0	0	1	0	0
C12orf12	196477	broad.mit.edu	37	12	91347469	91347469	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91347469C>T	uc001tbj.2	-	1	1485	c.1051G>A	c.(1051-1053)GAG>AAG	p.E351K		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	351	Potential.|Glu-rich.									central_nervous_system(1)|pancreas(1)	2						CCTCTCTGCTCGTTCTCCTCC	0.244													26	75					0	0	1	0	0
C12orf12	196477	broad.mit.edu	37	12	91347554	91347554	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91347554G>A	uc001tbj.2	-	1	1400	c.966C>T	c.(964-966)GTC>GTT	p.V322V		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	322	Potential.|Glu-rich.									central_nervous_system(1)|pancreas(1)	2						cagcctcttcgacctcttctt	0.154													9	31					0	0	1	0	0
C12orf12	196477	broad.mit.edu	37	12	91347850	91347850	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91347850C>T	uc001tbj.2	-	1	1104	c.670G>A	c.(670-672)GAG>AAG	p.E224K		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	224	Potential.									central_nervous_system(1)|pancreas(1)	2						GGGGAGGCCTCGCCGCTCACC	0.622													47	170					0	0	1	0	0
C12orf12	196477	broad.mit.edu	37	12	91348352	91348352	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91348352G>A	uc001tbj.2	-	1	602	c.168C>T	c.(166-168)CCC>CCT	p.P56P		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	56										central_nervous_system(1)|pancreas(1)	2						ACTCGGTCTTGGGGCTATATC	0.612													10	28					0	0	1	0	0
EPYC	1833	broad.mit.edu	37	12	91371958	91371958	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91371958C>T	uc001tbk.2	-	3	340	c.247G>A	c.(247-249)GAA>AAA	p.E83K		NM_004950	NP_004941	Q99645	EPYC_HUMAN	dermatan sulfate proteoglycan 3 precursor	83	Poly-Glu.				female pregnancy	proteinaceous extracellular matrix	glycosaminoglycan binding			skin(1)	1						TCCTCCTCTTCCTCTTCCTGG	0.507											OREG0022019	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	102					0	0	1	0	0
KERA	11081	broad.mit.edu	37	12	91449884	91449884	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91449884C>T	uc001tbl.2	-	2	794	c.175G>A	c.(175-177)GAA>AAA	p.E59K		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	59	LRRNT.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						CCTCTATTTTCACAATATAAA	0.373													31	79					0	0	1	0	0
LUM	4060	broad.mit.edu	37	12	91498068	91498068	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91498068G>A	uc001tbm.2	-	3	1280	c.891C>T	c.(889-891)ATC>ATT	p.I297I	LUM_uc001tbn.2_RNA	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	297					collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						ATGGCCCCAGGATCTTGCAGA	0.363													17	50					0	0	1	0	0
LUM	4060	broad.mit.edu	37	12	91502456	91502456	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91502456G>A	uc001tbm.2	-	2	690	c.301C>T	c.(301-303)CTT>TTT	p.L101F	LUM_uc001tbn.2_Intron	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	101	LRR 2.			L -> V (in Ref. 1; AAA85268).	collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						TTTTCTAGAAGGTTGTGATCT	0.388													23	54					0	0	1	0	0
LUM	4060	broad.mit.edu	37	12	91502502	91502502	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91502502G>A	uc001tbm.2	-	2	644	c.255C>T	c.(253-255)GCC>GCT	p.A85A	LUM_uc001tbn.2_Intron	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	85	LRR 1.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						CATTCTCAAAGGCCTTTTCAT	0.378													21	45					0	0	1	0	0
DCN	1634	broad.mit.edu	37	12	91539941	91539941	+	Missense_Mutation	SNP	G	A	A	rs138244851		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91539941G>A	uc001tbs.2	-	7	1068	c.974C>T	c.(973-975)TCG>TTG	p.S325L	DCN_uc001tbo.2_Missense_Mutation_p.S216L|DCN_uc001tbp.2_Missense_Mutation_p.S178L|DCN_uc001tbq.2_Missense_Mutation_p.S138L|DCN_uc001tbr.2_3'UTR|DCN_uc001tbt.2_Missense_Mutation_p.S325L|DCN_uc001tbu.2_Missense_Mutation_p.S325L	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	325	LRR 11.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						ACTCACACCCGAATAAGAAGC	0.463													46	89					0	0	1	0	0
DCN	1634	broad.mit.edu	37	12	91572281	91572281	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:91572281C>T	uc001tbs.2	-	1	143	c.49G>A	c.(49-51)GGA>AGA	p.G17R	DCN_uc001tbo.2_Missense_Mutation_p.G17R|DCN_uc001tbp.2_Missense_Mutation_p.G17R|DCN_uc001tbq.2_Missense_Mutation_p.G17R|DCN_uc001tbr.2_Missense_Mutation_p.G17R|DCN_uc001tbt.2_Missense_Mutation_p.G17R|DCN_uc001tbu.2_Missense_Mutation_p.G17R	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	17					organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						TGAAACGGTCCAGCCCAGGAA	0.473											OREG0022021	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	58					0	0	1	0	0
CLLU1OS	574016	broad.mit.edu	37	12	92814813	92814813	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:92814813C>T	uc001tcb.1	-	3	281	c.279G>A	c.(277-279)GGG>GGA	p.G93G	CLLU1_uc001tcc.2_5'Flank|CLLU1_uc001tcd.2_5'Flank|CLLU1_uc001tce.1_5'Flank|CLLU1_uc001tcf.2_5'Flank	NM_001025232	NP_001020403	Q5K130	CLU1O_HUMAN	chronic lymphocytic leukemia up-regulated 1	93											0						CTTCCTTCTTCCCATCATCAT	0.428													79	347					0	0	1	0	0
C12orf74	338809	broad.mit.edu	37	12	93100502	93100502	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:93100502G>A	uc001tch.1	+	2	325	c.95G>A	c.(94-96)GGG>GAG	p.G32E	C12orf74_uc001tci.2_Missense_Mutation_p.G32E	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	32											0						AAGAACCAGGGGAGTCTCCTC	0.597													17	41					0	0	1	0	0
C12orf74	338809	broad.mit.edu	37	12	93100657	93100657	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:93100657C>T	uc001tch.1	+	2	480	c.250C>T	c.(250-252)CTT>TTT	p.L84F	C12orf74_uc001tci.2_Missense_Mutation_p.L84F	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	84											0						CCCATGTTACCTTTCGAAGAG	0.557													22	48					0	0	1	0	0
C12orf74	338809	broad.mit.edu	37	12	93100687	93100687	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:93100687G>A	uc001tch.1	+	2	510	c.280G>A	c.(280-282)GAT>AAT	p.D94N	C12orf74_uc001tci.2_Missense_Mutation_p.D94N	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	94											0						AAGCCCAAAGGATTCTTCACA	0.572													24	56					0	0	1	0	0
C12orf74	338809	broad.mit.edu	37	12	93100831	93100831	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:93100831G>A	uc001tch.1	+	2	654	c.424G>A	c.(424-426)GAA>AAA	p.E142K	C12orf74_uc001tci.2_Missense_Mutation_p.E142K	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	142											0						GCCTGTCAATGAAGGGTCCCT	0.587													27	53					0	0	1	0	0
C12orf74	338809	broad.mit.edu	37	12	93100888	93100888	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:93100888C>T	uc001tch.1	+	2	711	c.481C>T	c.(481-483)CCC>TCC	p.P161S	C12orf74_uc001tci.2_Missense_Mutation_p.P161S	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	161											0						CCTGCCCAGCCCCACCCTACG	0.547													7	41					0	0	1	0	0
PLEKHG7	440107	broad.mit.edu	37	12	93134671	93134671	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:93134671C>T	uc001tcj.2	+	3	276	c.46C>T	c.(46-48)CTC>TTC	p.L16F		NM_001004330	NP_001004330	Q6ZR37	PKHG7_HUMAN	pleckstrin homology domain containing, family G	16	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1						TCATGAATATCTCCTAGATGT	0.323													16	50					0	0	1	0	0
EEA1	8411	broad.mit.edu	37	12	93244932	93244932	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:93244932G>A	uc001tck.2	-	9	1018	c.753C>T	c.(751-753)CTC>CTT	p.L251L		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	251	Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						ATTCATCTTTGAGTTTTTCAG	0.368													17	59					0	0	1	0	0
SOCS2	8835	broad.mit.edu	37	12	93968856	93968856	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:93968856C>T	uc001tcw.1	+	3	1088	c.498C>T	c.(496-498)CTC>CTT	p.L166L	SOCS2_uc001tcx.1_Silent_p.L166L|SOCS2_uc009zsu.2_3'UTR|SOCS2_uc001tcy.1_Silent_p.L166L|SOCS2_uc001tcz.2_3'UTR	NM_003877	NP_003868	O14508	SOCS2_HUMAN	suppressor of cytokine signaling-2	166	SOCS box.				anti-apoptosis|growth hormone receptor signaling pathway|JAK-STAT cascade|negative regulation of signal transduction|regulation of cell growth|response to estradiol stimulus	cytoplasm	growth hormone receptor binding|insulin-like growth factor receptor binding|JAK pathway signal transduction adaptor activity|prolactin receptor binding|SH3/SH2 adaptor activity			lung(1)	1						TGCAGCATCTCTGTAGGCTCA	0.478													28	47					0	0	1	0	0
PLXNC1	10154	broad.mit.edu	37	12	94580218	94580218	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:94580218C>T	uc001tdc.2	+	4	1657	c.1408C>T	c.(1408-1410)CCT>TCT	p.P470S		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	470	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						AGCCACAGACCCTCACTGCGG	0.443													10	42					0	0	1	0	0
TMCC3	57458	broad.mit.edu	37	12	94965318	94965318	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:94965318G>A	uc001tdj.2	-	4	1445	c.1327C>T	c.(1327-1329)CGC>TGC	p.R443C	TMCC3_uc001tdi.2_Missense_Mutation_p.R412C	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	443						integral to membrane				ovary(1)|skin(1)	2						ATGTGGCAGCGACTCTTCATC	0.478													53	91					0	0	1	0	0
TMCC3	57458	broad.mit.edu	37	12	94975597	94975597	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:94975597C>T	uc001tdj.2	-	2	914	c.796G>A	c.(796-798)GAC>AAC	p.D266N	TMCC3_uc001tdi.2_Missense_Mutation_p.D235N	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	266						integral to membrane				ovary(1)|skin(1)	2						CCGTTACTGTCGGCCGAGCCT	0.597													32	98					0	0	1	0	0
MIR492	574449	broad.mit.edu	37	12	95228202	95228202	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:95228202G>A	hsa-mir-492|MI0003131	+			c.29G>A			uc001tdk.2_RNA																	0						CAGGACCATCGAGGACCTGCG	0.552													12	41					0	0	1	0	0
NR2C1	7181	broad.mit.edu	37	12	95419008	95419008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:95419008C>T	uc001tdm.3	-	13	1811	c.1555G>A	c.(1555-1557)GAA>AAA	p.E519K		NM_003297	NP_003288	P13056	NR2C1_HUMAN	nuclear receptor subfamily 2, group C, member 1	519					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	PML body	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1						TCTATCTGTTCCATGTTTTCT	0.343													10	33					0	0	1	0	0
FGD6	55785	broad.mit.edu	37	12	95502186	95502186	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:95502186G>A	uc001tdp.3	-	11	3426	c.3202C>T	c.(3202-3204)CAG>TAG	p.Q1068*	FGD6_uc009zsx.2_Nonsense_Mutation_p.Q201*|FGD6_uc001tdq.1_Nonsense_Mutation_p.Q104*	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	1068					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						ATAAGTTTCTGAAAGTTGTCC	0.423													11	45					0	0	1	0	0
FGD6	55785	broad.mit.edu	37	12	95602890	95602890	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:95602890C>A	uc001tdp.3	-	2	2394	c.2170G>T	c.(2170-2172)GAC>TAC	p.D724Y	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	724					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						AGCATTTGGTCATCCAAAGAC	0.463													19	107					4.63292e-17	4.6557e-17	1	1	0
FGD6	55785	broad.mit.edu	37	12	95603935	95603935	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:95603935C>T	uc001tdp.3	-	2	1349	c.1125G>A	c.(1123-1125)GTG>GTA	p.V375V	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	375					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						TCATTTTATCCACCTGTTCCT	0.353													27	70					0	0	1	0	0
FGD6	55785	broad.mit.edu	37	12	95604162	95604162	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:95604162G>A	uc001tdp.3	-	2	1122	c.898C>T	c.(898-900)CCC>TCC	p.P300S	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	300					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						ATTTCTAAGGGACCAAGGTCT	0.403													42	108					0	0	1	0	0
FGD6	55785	broad.mit.edu	37	12	95604975	95604975	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:95604975G>A	uc001tdp.3	-	2	309	c.85C>T	c.(85-87)CCT>TCT	p.P29S	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	29					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						GGTGCAATAGGAGGTGGGGCT	0.428													89	163					0	0	1	0	0
VEZT	55591	broad.mit.edu	37	12	95694267	95694267	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:95694267C>T	uc001tdz.2	+	12	2263	c.2158C>T	c.(2158-2160)CCC>TCC	p.P720S	VEZT_uc009ztb.1_RNA|VEZT_uc009ztc.1_Missense_Mutation_p.P85S|VEZT_uc001tdy.2_RNA	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	720						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						CTCATTACAGCCCTCCATTAA	0.507													13	38					0	0	1	0	0
USP44	84101	broad.mit.edu	37	12	95927254	95927254	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:95927254G>A	uc001teg.2	-	2	923	c.779C>T	c.(778-780)TCC>TTC	p.S260F	USP44_uc001teh.2_Missense_Mutation_p.S260F|USP44_uc009zte.2_Missense_Mutation_p.S257F	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	260					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						TTTAACTGAGGAGTCACTGAC	0.393													23	98					0	0	1	0	0
NTN4	59277	broad.mit.edu	37	12	96059665	96059665	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:96059665C>T	uc001tei.2	-	9	2120	c.1671G>A	c.(1669-1671)CTG>CTA	p.L557L	NTN4_uc009ztf.2_Silent_p.L534L|NTN4_uc009ztg.2_Silent_p.L520L	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	557	NTR.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GGAAAATCTTCAGTTTGGTAG	0.363													19	70					0	0	1	0	0
NTN4	59277	broad.mit.edu	37	12	96076520	96076520	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:96076520C>T	uc001tei.2	-	7	1922	c.1473G>A	c.(1471-1473)TGG>TGA	p.W491*	NTN4_uc009ztf.2_Nonsense_Mutation_p.W491*|NTN4_uc009ztg.2_Nonsense_Mutation_p.W454*	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	491					axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GCGCATCCTCCCACTCCCAGG	0.463													14	55					0	0	1	0	0
NTN4	59277	broad.mit.edu	37	12	96106999	96106999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:96106999C>T	uc001tei.2	-	4	1431	c.982G>A	c.(982-984)GAG>AAG	p.E328K	NTN4_uc009ztf.2_Missense_Mutation_p.E328K|NTN4_uc009ztg.2_Missense_Mutation_p.E291K	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	328	Laminin EGF-like 1.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CTTCTGCACTCGTTGGGAGCC	0.502													20	65					0	0	1	0	0
NTN4	59277	broad.mit.edu	37	12	96180974	96180974	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:96180974C>T	uc001tei.2	-	2	777	c.328G>A	c.(328-330)GAG>AAG	p.E110K	NTN4_uc009ztf.2_Missense_Mutation_p.E110K|NTN4_uc009ztg.2_Missense_Mutation_p.E73K	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	110	Laminin N-terminal.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						TGCACATCCTCCGCAGACTGC	0.532													18	46					0	0	1	0	0
AMDHD1	144193	broad.mit.edu	37	12	96354255	96354255	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:96354255G>A	uc001tel.1	+	5	773	c.667G>A	c.(667-669)GAA>AAA	p.E223K	AMDHD1_uc009zth.1_Missense_Mutation_p.E114K	NM_152435	NP_689648	Q96NU7	HUTI_HUMAN	amidohydrolase domain containing 1	223					histidine catabolic process to glutamate and formamide	cytosol	imidazolonepropionase activity|metal ion binding			central_nervous_system(1)	1						CAGAAATGGGGAAATACACGT	0.418													9	83					0	0	1	0	0
HAL	3034	broad.mit.edu	37	12	96389457	96389457	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:96389457C>T	uc001tem.1	-	2	529	c.232G>A	c.(232-234)GAG>AAG	p.E78K	HAL_uc009zti.1_RNA|HAL_uc010suw.1_5'UTR|HAL_uc010sux.1_Missense_Mutation_p.E78K	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	78					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	TCCACGAACTCGTTGTTCTCT	0.627													7	66					0	0	1	0	0
LTA4H	4048	broad.mit.edu	37	12	96421285	96421285	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:96421285G>A	uc001ten.1	-	3	416	c.348C>T	c.(346-348)CTC>CTT	p.L116L	LTA4H_uc010suy.1_Silent_p.L78L|LTA4H_uc010suz.1_Silent_p.L78L|LTA4H_uc010sva.1_Intron	NM_000895	NP_000886	P09960	LKHA4_HUMAN	leukotriene A4 hydrolase	116					hormone biosynthetic process|inflammatory response|leukotriene biosynthetic process|peptide catabolic process|prostanoid metabolic process|proteolysis	cytosol|nucleus	aminopeptidase activity|epoxide hydrolase activity|leukotriene-A4 hydrolase activity|metallopeptidase activity|protein binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(1)	1						TGAGCCACTGGAGAGCAGAAG	0.368													14	78					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97045391	97045391	+	Nonsense_Mutation	SNP	G	A	A	rs78760556		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:97045391G>A	uc001tet.1	+	3	251	c.173G>A	c.(172-174)TGG>TAG	p.W58*		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	58										skin(6)|ovary(1)	7						GGTGGCTATTGGACTCTGCTT	0.383													49	73					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97051876	97051876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:97051876G>A	uc001tet.1	+	4	670	c.592G>A	c.(592-594)GTT>ATT	p.V198I		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	198										skin(6)|ovary(1)	7						GTTCAATACAGTTTCACAGTA	0.294													17	52					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97078439	97078439	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:97078439C>T	uc001tet.1	+	8	1083	c.1005C>T	c.(1003-1005)GCC>GCT	p.A335A		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	335										skin(6)|ovary(1)	7						TTCTCCAAGCCAGCAATCAAA	0.308													7	105					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97078893	97078893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:97078893C>T	uc001tet.1	+	9	1244	c.1166C>T	c.(1165-1167)TCA>TTA	p.S389L		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	389										skin(6)|ovary(1)	7						TTTGGCCCCTCACTCACCAAT	0.468													16	40					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97137245	97137245	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:97137245G>A	uc001tet.1	+	20	2638	c.2560G>A	c.(2560-2562)GAC>AAC	p.D854N		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	854										skin(6)|ovary(1)	7						AAGCGCAGGGGACACGGAACT	0.413													34	76					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97158976	97158976	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:97158976C>T	uc001tet.1	+	27	3614	c.3536C>T	c.(3535-3537)TCG>TTG	p.S1179L		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1179										skin(6)|ovary(1)	7						CTTTTGTCTTCGTATACAGAT	0.289													26	73					0	0	1	0	0
NEDD1	121441	broad.mit.edu	37	12	97339584	97339584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:97339584C>T	uc001teu.3	+	14	2107	c.1768C>T	c.(1768-1770)CGT>TGT	p.R590C	NEDD1_uc001tev.3_Missense_Mutation_p.R590C|NEDD1_uc010svc.1_Missense_Mutation_p.R501C|NEDD1_uc001tew.2_Missense_Mutation_p.R597C|NEDD1_uc001tex.2_Missense_Mutation_p.R501C	NM_152905	NP_690869	Q8NHV4	NEDD1_HUMAN	neural precursor cell expressed, developmentally	590					cell division|G2/M transition of mitotic cell cycle|mitosis	cytosol					0						CATTCAAATTCGTTTTATTCA	0.373													33	54					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	98126997	98126997	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:98126997C>T	uc001tfc.1	-	5		c.1060G>A			uc001tfd.2_RNA					Homo sapiens cDNA FLJ25775 fis, clone TST06543.																		CCTTGAATATCTTCCACTGCA	0.468													12	17					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	98850360	98850360	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:98850360G>A	uc009ztm.1	-	1	564	c.375C>T	c.(373-375)TTC>TTT	p.F125F						Homo sapiens cDNA FLJ35312 fis, clone PROST2010545, highly similar to Sodium/hydrogen exchanger 7.																		CCTATGGGTCGAATGTTACCT	0.413													8	22					0	0	1	0	0
TMPO	7112	broad.mit.edu	37	12	98941610	98941610	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:98941610C>T	uc001tfj.2	+	9	1576	c.1339C>T	c.(1339-1341)CAT>TAT	p.H447Y	TMPO_uc001tfk.2_Missense_Mutation_p.H338Y|TMPO_uc001tfl.2_RNA	NM_001032283	NP_001027454	P42167	LAP2B_HUMAN	thymopoietin isoform beta	447	Lumenal (Potential).					integral to membrane|nuclear inner membrane	DNA binding|lamin binding			ovary(2)	2						TAATTTTCTTCATGTTGACCC	0.343													51	115					0	0	1	0	0
IKBIP	121457	broad.mit.edu	37	12	99007635	99007635	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:99007635G>A	uc001tfv.2	-	3	891	c.781C>T	c.(781-783)CTA>TTA	p.L261L	IKBIP_uc001tfw.2_3'UTR	NM_201612	NP_963906	Q70UQ0	IKIP_HUMAN	IKK interacting protein isoform 2	261					induction of apoptosis|response to X-ray	endoplasmic reticulum membrane|integral to membrane	protein binding				0						TCTAAGCTTAGAAATCTATCT	0.373													24	97					0	0	1	0	0
APAF1	317	broad.mit.edu	37	12	99060038	99060038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:99060038C>T	uc001tfz.2	+	9	1842	c.1265C>T	c.(1264-1266)TCT>TTT	p.S422F	APAF1_uc001tfy.2_Missense_Mutation_p.S411F|APAF1_uc001tga.2_Missense_Mutation_p.S411F|APAF1_uc001tgb.2_Missense_Mutation_p.S422F|APAF1_uc001tgc.2_Intron	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	422					activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	GTAAATAAGTCTCTTTTATTC	0.353													40	96					0	0	1	0	0
ANKS1B	56899	broad.mit.edu	37	12	99446978	99446978	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:99446978G>A	uc001tge.1	-	17	3152	c.2735C>T	c.(2734-2736)TCG>TTG	p.S912L	ANKS1B_uc001tgf.1_Missense_Mutation_p.S488L|ANKS1B_uc001tgk.2_Missense_Mutation_p.S209L|ANKS1B_uc001tgd.1_Missense_Mutation_p.S138L|ANKS1B_uc001tgi.2_Missense_Mutation_p.S138L|ANKS1B_uc009ztr.2_Missense_Mutation_p.S138L|ANKS1B_uc001tgj.2_Missense_Mutation_p.S138L|ANKS1B_uc001tgg.3_Missense_Mutation_p.S81L|ANKS1B_uc010svg.1_Missense_Mutation_p.S107L|ANKS1B_uc009zts.1_Missense_Mutation_p.S138L|ANKS1B_uc001tgm.1_Missense_Mutation_p.S138L	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	912	SAM 2.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CAGGTCCATCGAAGTGTAGCC	0.408													3	10					0	0	1	0	0
ANKS1B	56899	broad.mit.edu	37	12	99640355	99640355	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:99640355C>T	uc001tge.1	-	13	2461	c.2044G>A	c.(2044-2046)GAA>AAA	p.E682K	ANKS1B_uc001tgf.1_Missense_Mutation_p.E262K|ANKS1B_uc001tgk.2_5'UTR|ANKS1B_uc009ztt.1_Missense_Mutation_p.E648K	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	682						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		GTATGGTTTTCGAGTTGGTTG	0.428													4	28					0	0	1	0	0
ANKS1B	56899	broad.mit.edu	37	12	99898318	99898318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:99898318C>T	uc001tge.1	-	10	1791	c.1374G>A	c.(1372-1374)ATG>ATA	p.M458I	ANKS1B_uc001tgf.1_Missense_Mutation_p.M38I|ANKS1B_uc009ztt.1_Missense_Mutation_p.M424I	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	458						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CAGCTGTGTCCATGAGATCAC	0.393													22	28					0	0	1	0	0
ANKS1B	56899	broad.mit.edu	37	12	100200274	100200274	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:100200274G>A	uc001tge.1	-	4	994	c.577C>T	c.(577-579)CGC>TGC	p.R193C	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Missense_Mutation_p.R193C	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	193	ANK 6.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		GTGTGCTTGCGAGTGTTGCAG	0.527													16	59					0	0	1	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100433464	100433464	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:100433464G>A	uc001tgq.2	-	20	4414	c.4185C>T	c.(4183-4185)GTC>GTT	p.V1395V	UHRF1BP1L_uc001tgp.2_Silent_p.V1045V	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	1395										ovary(2)	2						TGGCTTGCGTGACACTGCGTT	0.458													17	55					0	0	1	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100451917	100451918	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:100451917_100451918GA>AT	uc001tgq.2	-	14	3366_3367	c.3137_3138TC>AT	c.(3136-3138)ATC>AAT	p.I1046N	UHRF1BP1L_uc001tgp.2_Missense_Mutation_p.I696N	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	1046										ovary(2)	2						CAGCTTTAAAGATGGACTCTAT	0.356													30	81					0	0	1	0	0
SCYL2	55681	broad.mit.edu	37	12	100708387	100708387	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:100708387C>T	uc001thn.2	+	8	1140	c.1090C>T	c.(1090-1092)CCC>TCC	p.P364S	SCYL2_uc009ztw.1_Missense_Mutation_p.P191S|SCYL2_uc001thm.1_Missense_Mutation_p.P364S	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	364					endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						ACCAAAACTGCCCAAGGTTTG	0.303													9	59					0	0	1	0	0
SLC17A8	246213	broad.mit.edu	37	12	100774643	100774643	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:100774643C>T	uc010svi.1	+	2	579	c.266C>T	c.(265-267)TCC>TTC	p.S89F	SLC17A8_uc009ztx.2_Missense_Mutation_p.S89F	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	89	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TTCTGCATTTCCTTTGGGATC	0.517													28	127					0	0	1	0	0
SLC17A8	246213	broad.mit.edu	37	12	100813667	100813667	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:100813667C>T	uc010svi.1	+	12	1813	c.1500C>T	c.(1498-1500)GTC>GTT	p.V500V	SLC17A8_uc009ztx.2_Silent_p.V450V	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	500	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TCTATGGGGTCTTTGCTTCTG	0.463													27	69					0	0	1	0	0
NR1H4	9971	broad.mit.edu	37	12	100926317	100926317	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:100926317G>A	uc001tht.1	+	3	585	c.557G>A	c.(556-558)CGA>CAA	p.R186Q	NR1H4_uc001thp.1_Missense_Mutation_p.R176Q|NR1H4_uc001thq.1_Missense_Mutation_p.R176Q|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.R176Q|NR1H4_uc010svk.1_Intron|NR1H4_uc001ths.1_Missense_Mutation_p.R186Q	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	186	NR C4-type.|Nuclear receptor.				bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						ATGTACATGCGAAGAAAGTGT	0.408													28	75					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101336183	101336183	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101336183G>A	uc010svm.1	+	5	898	c.326G>A	c.(325-327)GGA>GAA	p.G109E	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.G74E|ANO4_uc001thx.2_Missense_Mutation_p.G109E	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	109	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AAATCAAATGGACTTTACTTT	0.368										HNSCC(74;0.22)			24	105					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101365178	101365178	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101365178C>T	uc010svm.1	+	6	1123	c.551C>T	c.(550-552)CCT>CTT	p.P184L	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.P149L|ANO4_uc001thx.2_Missense_Mutation_p.P184L	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	184	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						GTAAGAATGCCTTTCAGGTAG	0.373										HNSCC(74;0.22)			25	72					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101413856	101413856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101413856G>A	uc010svm.1	+	9	1351	c.779G>A	c.(778-780)AGA>AAA	p.R260K	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.R225K|ANO4_uc001thx.2_Missense_Mutation_p.R260K	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	260	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AATGCCACAAGAAGTAGAATC	0.308										HNSCC(74;0.22)			27	55					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101480449	101480449	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101480449G>A	uc010svm.1	+	17	2120	c.1548G>A	c.(1546-1548)GTG>GTA	p.V516V	ANO4_uc001thw.2_Silent_p.V481V|ANO4_uc001thx.2_Silent_p.V516V|ANO4_uc001thy.2_Silent_p.V36V	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	516	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TCTGCGTGGTGATTGCTGCCG	0.502										HNSCC(74;0.22)			90	203					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101488063	101488063	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101488063G>A	uc010svm.1	+	18	2303	c.1731G>A	c.(1729-1731)ACG>ACA	p.T577T	ANO4_uc001thw.2_Silent_p.T542T|ANO4_uc001thx.2_Silent_p.T577T|ANO4_uc001thy.2_Silent_p.T97T	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	577	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TGCTTCTGACGAATTTAGGTG	0.328										HNSCC(74;0.22)			26	56					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101491710	101491710	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101491710G>A	uc010svm.1	+	21	2565	c.1993G>A	c.(1993-1995)GAA>AAA	p.E665K	ANO4_uc001thw.2_Missense_Mutation_p.E630K|ANO4_uc001thx.2_Missense_Mutation_p.E665K|ANO4_uc001thy.2_Missense_Mutation_p.E185K	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	665	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						taatttcatggaacttggcta	0.299										HNSCC(74;0.22)			46	104					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101493479	101493479	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101493479C>T	uc010svm.1	+	22	2702	c.2130C>T	c.(2128-2130)TTC>TTT	p.F710F	ANO4_uc001thw.2_Silent_p.F675F|ANO4_uc001thx.2_Silent_p.F710F|ANO4_uc001thy.2_Silent_p.F230F	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	710	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ATGGACTCTTCGATGAATACT	0.333										HNSCC(74;0.22)			49	28					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101510475	101510475	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101510475G>A	uc010svm.1	+	25	3041	c.2469G>A	c.(2467-2469)GTG>GTA	p.V823V	ANO4_uc001thw.2_Silent_p.V788V|ANO4_uc001thx.2_Silent_p.V823V|ANO4_uc001thy.2_Silent_p.V343V	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	823	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TTGGCTATGTGAATGCCAGCT	0.473										HNSCC(74;0.22)			79	207					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101510519	101510519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101510519G>A	uc010svm.1	+	25	3085	c.2513G>A	c.(2512-2514)CGA>CAA	p.R838Q	ANO4_uc001thw.2_Missense_Mutation_p.R803Q|ANO4_uc001thx.2_Missense_Mutation_p.R838Q|ANO4_uc001thy.2_Missense_Mutation_p.R358Q	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	838	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TTTGAGAACCGATCTGAGCCT	0.507										HNSCC(74;0.22)			62	139					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101551177	101551177	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101551177C>T	uc001thz.3	-	15	2103	c.1713G>A	c.(1711-1713)AAG>AAA	p.K571K		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	571	Poly-Lys.|Cytoplasmic (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						AAACATGCTTCTTCTAAAAGA	0.343													3	11					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101587521	101587521	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101587521G>A	uc001thz.3	-	5	964	c.574C>T	c.(574-576)CAA>TAA	p.Q192*		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	192	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						ATCCCAACTTGAAAAACATCT	0.398													26	162					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101679563	101679563	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101679563C>T	uc001tia.1	+	4	386	c.230C>T	c.(229-231)TCA>TTA	p.S77L	UTP20_uc009ztz.1_Missense_Mutation_p.S77L	NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	77					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						AAATGCCAATCATTCAATCAG	0.358													36	85					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101680176	101680176	+	Missense_Mutation	SNP	C	T	T	rs147399996		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101680176C>T	uc001tia.1	+	5	560	c.404C>T	c.(403-405)TCG>TTG	p.S135L	UTP20_uc009ztz.1_Missense_Mutation_p.S135L	NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	135					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						ACTATCACCTCGATCCTGGAG	0.423													84	199					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101684039	101684039	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101684039C>T	uc001tia.1	+	7	878	c.722C>T	c.(721-723)TCC>TTC	p.S241F	UTP20_uc009ztz.1_Missense_Mutation_p.S241F	NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	241					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						ATGTTTCACTCCTGTACAGGC	0.393													10	40					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101720918	101720918	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101720918C>T	uc001tia.1	+	26	3257	c.3101C>T	c.(3100-3102)TCA>TTA	p.S1034L		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1034					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						AAATCTGCTTCAGGCACCCGC	0.463													38	101					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101739389	101739389	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101739389C>T	uc001tia.1	+	37	4819	c.4663C>T	c.(4663-4665)CAA>TAA	p.Q1555*		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1555					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						CTTTCCAAACCAACTGGAATT	0.338													22	64					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101739420	101739420	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:101739420C>T	uc001tia.1	+	37	4850	c.4694C>T	c.(4693-4695)ACT>ATT	p.T1565I		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1565					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						GTACAACTTACTCATTACCAT	0.358													23	87					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102036332	102036332	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102036332G>A	uc001tii.2	+	9	828	c.726G>A	c.(724-726)AAG>AAA	p.K242K	MYBPC1_uc001tif.1_Silent_p.K255K|MYBPC1_uc001tig.2_Silent_p.K267K|MYBPC1_uc010svq.1_Silent_p.K229K|MYBPC1_uc001tih.2_Silent_p.K267K|MYBPC1_uc001tij.2_Silent_p.K242K|MYBPC1_uc010svr.1_Silent_p.K242K|MYBPC1_uc010svs.1_Silent_p.K242K|MYBPC1_uc010svt.1_Silent_p.K230K|MYBPC1_uc010svu.1_Silent_p.K223K|MYBPC1_uc001tik.2_Silent_p.K216K	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	242					cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						AGCGACTCAAGCGCATGCGCA	0.617													7	16					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102045066	102045066	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102045066A>C	uc001tii.2	+	14	1448	c.1346A>C	c.(1345-1347)GAA>GCA	p.E449A	MYBPC1_uc001tif.1_Missense_Mutation_p.E462A|MYBPC1_uc001tig.2_Missense_Mutation_p.E474A|MYBPC1_uc010svq.1_Missense_Mutation_p.E436A|MYBPC1_uc001tih.2_Missense_Mutation_p.E474A|MYBPC1_uc001tij.2_Missense_Mutation_p.E449A|MYBPC1_uc010svr.1_Missense_Mutation_p.E449A|MYBPC1_uc010svs.1_Missense_Mutation_p.E449A|MYBPC1_uc010svt.1_Missense_Mutation_p.E437A|MYBPC1_uc010svu.1_Missense_Mutation_p.E430A|MYBPC1_uc001tik.2_Missense_Mutation_p.E423A	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	449	Ig-like C2-type 4.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						CTTGGAAAAGAAATCTGCCTG	0.418													36	121					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102067320	102067320	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102067320G>A	uc001tii.2	+	24	2810	c.2708G>A	c.(2707-2709)AGG>AAG	p.R903K	MYBPC1_uc001tig.2_Missense_Mutation_p.R910K|MYBPC1_uc010svq.1_Missense_Mutation_p.R872K|MYBPC1_uc001tih.2_Missense_Mutation_p.R910K|MYBPC1_uc001tij.2_Missense_Mutation_p.R885K|MYBPC1_uc010svr.1_Missense_Mutation_p.R885K|MYBPC1_uc010svs.1_Missense_Mutation_p.R903K|MYBPC1_uc010svt.1_Missense_Mutation_p.R873K|MYBPC1_uc010svu.1_Missense_Mutation_p.R866K|MYBPC1_uc001tik.2_Missense_Mutation_p.R859K|MYBPC1_uc001til.2_5'UTR|MYBPC1_uc001tim.2_5'UTR	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	903	Ig-like C2-type 6.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						AAAGCAGAGAGGAGCCACTCT	0.388													84	178					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102071146	102071146	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102071146A>T	uc001tii.2	+	26	3164	c.3062A>T	c.(3061-3063)AAA>ATA	p.K1021I	MYBPC1_uc001tig.2_Missense_Mutation_p.K1028I|MYBPC1_uc010svq.1_Missense_Mutation_p.K990I|MYBPC1_uc001tih.2_Missense_Mutation_p.K1028I|MYBPC1_uc001tij.2_Missense_Mutation_p.K1003I|MYBPC1_uc010svr.1_Missense_Mutation_p.K1003I|MYBPC1_uc010svs.1_Missense_Mutation_p.K1021I|MYBPC1_uc010svt.1_Missense_Mutation_p.K991I|MYBPC1_uc010svu.1_Missense_Mutation_p.K984I|MYBPC1_uc001tik.2_Missense_Mutation_p.K977I|MYBPC1_uc001til.2_Missense_Mutation_p.K46I|MYBPC1_uc001tim.2_Missense_Mutation_p.K46I	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	1021	Fibronectin type-III 3.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						ACCATGACTAAAGAGAGTGCA	0.458													14	30					0	0	1	0	0
DRAM1	55332	broad.mit.edu	37	12	102302023	102302023	+	Silent	SNP	C	T	T	rs61748065		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102302023C>T	uc001tix.2	+	4	865	c.402C>T	c.(400-402)GTC>GTT	p.V134V	DRAM1_uc010svv.1_Intron	NM_018370	NP_060840	Q8N682	DRAM1_HUMAN	DNA-damage regulated autophagy modulator 1	134	Helical; (Potential).				apoptosis|autophagy	integral to membrane|lysosomal membrane				ovary(1)	1						TCTGTGGTGTCGTGTACACGC	0.498													17	120					0	0	1	0	0
NUP37	79023	broad.mit.edu	37	12	102471194	102471194	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102471194G>A	uc001tjc.2	-	6	693	c.628C>T	c.(628-630)CCA>TCA	p.P210S	NUP37_uc009zub.1_Missense_Mutation_p.P210S	NM_024057	NP_076962	Q8NFH4	NUP37_HUMAN	nucleoporin 37kDa	210					carbohydrate metabolic process|cell division|chromosome segregation|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	protein binding			ovary(1)	1						GACATTAATGGCACTTGTTCT	0.403													50	70					0	0	1	0	0
C12orf48	55010	broad.mit.edu	37	12	102569432	102569432	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102569432C>T	uc001tjf.2	+	7	1105	c.993C>T	c.(991-993)ATC>ATT	p.I331I	C12orf48_uc001tjg.2_Silent_p.I250I|C12orf48_uc010swa.1_Silent_p.I408I|C12orf48_uc001tjh.2_Silent_p.I250I|C12orf48_uc010swb.1_Intron|C12orf48_uc009zuc.2_Intron|C12orf48_uc001tjj.2_Silent_p.I46I|C12orf48_uc001tjk.2_Intron|C12orf48_uc009zud.2_Intron	NM_017915	NP_060385	Q9NWS1	PR1BP_HUMAN	hypothetical protein LOC55010	331					response to DNA damage stimulus	cytoplasm|nucleus	DNA binding				0						CCACTGACATCAGTCCTGCTC	0.318													18	41					0	0	1	0	0
PMCH	5367	broad.mit.edu	37	12	102591323	102591323	+	Missense_Mutation	SNP	C	T	T	rs141964854		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102591323C>T	uc001tjl.2	-	1	292	c.226G>A	c.(226-228)GAA>AAA	p.E76K		NM_002674	NP_002665	P20382	MCH_HUMAN	pro-melanin-concentrating hormone	76					cell differentiation|neuropeptide signaling pathway|spermatogenesis|synaptic transmission		melanin-concentrating hormone activity				0						TTTTCCTCTTCGTTCATGAAA	0.348													24	84					0	0	1	0	0
IGF1	3479	broad.mit.edu	37	12	102811671	102811671	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102811671G>A	uc001tjp.3	-	4	732	c.513C>T	c.(511-513)ATC>ATT	p.I171I	IGF1_uc001tjn.2_Intron|IGF1_uc001tjm.2_Intron|IGF1_uc001tjo.2_Intron	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	171					anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						TCTTTCCTCTGATCTGCAGAC	0.463													199	379					0	0	1	0	0
IGF1	3479	broad.mit.edu	37	12	102869433	102869434	+	Missense_Mutation	DNP	CC	TT	TT	rs147960415	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102869433_102869434CC>TT	uc001tjp.3	-	2	426_427	c.207_208GG>AA	c.(205-210)AGGGGC>AGAAGC	p.G70S	IGF1_uc001tjn.2_Missense_Mutation_p.G54S|IGF1_uc001tjm.2_Missense_Mutation_p.G70S|IGF1_uc001tjo.2_Missense_Mutation_p.G70S	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	70	B.				anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						AAATAAAAGCCCCTGTCTCCAC	0.55													15	61					0	0	1	0	0
IGF1	3479	broad.mit.edu	37	12	102869555	102869555	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:102869555G>A	uc001tjp.3	-	2	305	c.86C>T	c.(85-87)TCC>TTC	p.S29F	IGF1_uc001tjn.2_Missense_Mutation_p.S13F|IGF1_uc001tjm.2_Missense_Mutation_p.S29F|IGF1_uc001tjo.2_Missense_Mutation_p.S29F	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	29					anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						GAGATGCGAGGAGGACATGGT	0.597													4	24					0	0	1	0	0
PAH	5053	broad.mit.edu	37	12	103249038	103249038	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:103249038C>T	uc001tjq.1	-	7	1054	c.582G>A	c.(580-582)CTG>CTA	p.L194L	PAH_uc010swc.1_Silent_p.L194L	NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	194			Missing (in PKU).|L -> P (in PKU).		catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	ACAAGGACTTCAGAGTCTTGA	0.438													12	57					0	0	1	0	0
PAH	5053	broad.mit.edu	37	12	103260388	103260388	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:103260388G>A	uc001tjq.1	-	6	967	c.495C>T	c.(493-495)GCC>GCT	p.A165A	PAH_uc010swc.1_Silent_p.A165A	NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	165					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	GGTAGTTGTAGGCAATGTCAG	0.488													11	83					0	0	1	0	0
ASCL1	429	broad.mit.edu	37	12	103352675	103352675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:103352675C>T	uc001tjr.3	+	1	1224	c.653C>T	c.(652-654)TCT>TTT	p.S218F		NM_004316	NP_004307	P50553	ASCL1_HUMAN	achaete-scute complex homolog 1	218					cerebral cortex GABAergic interneuron differentiation|negative regulation of apoptosis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|noradrenergic neuron fate commitment|Notch signaling pathway|positive regulation of neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|response to retinoic acid|sympathetic nervous system development	nucleus	bHLH transcription factor binding|E-box binding|sequence-specific DNA binding transcription factor activity|transcription factor binding transcription factor activity				0						GACGAGGGCTCTTACGACCCG	0.632													14	41					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104025408	104025408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104025408G>A	uc001tjw.2	+	6	706	c.520G>A	c.(520-522)GGA>AGA	p.G174R		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	174	Extracellular (Potential).|EGF-like 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GTGCAACAGTGGACTAGATGG	0.488													39	153					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104031893	104031893	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104031893G>A	uc001tjw.2	+	8	995	c.809G>A	c.(808-810)GGG>GAG	p.G270E		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	270	Extracellular (Potential).|EGF-like 4.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GGCTACCGTGGGGATGGCCAA	0.502													28	83					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104031898	104031898	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104031898G>A	uc001tjw.2	+	8	1000	c.814G>A	c.(814-816)GGC>AGC	p.G272S		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	272	Extracellular (Potential).|EGF-like 4.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCGTGGGGATGGCCAAGTGTG	0.498													39	67					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104042572	104042572	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104042572G>A	uc001tjw.2	+	10	1331	c.1145G>A	c.(1144-1146)GGA>GAA	p.G382E		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	382	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AAATGGCAAGGAAGGCTGACC	0.443													38	83					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104044282	104044282	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104044282T>C	uc001tjw.2	+	11	1369	c.1183T>C	c.(1183-1185)TAT>CAT	p.Y395H		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	395	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGACAAAGCTTATGCCTGGCC	0.458													14	44					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104048474	104048474	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104048474G>A	uc001tjw.2	+	13	1735	c.1549G>A	c.(1549-1551)GAG>AAG	p.E517K		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	517	Extracellular (Potential).|FAS1 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GAGCAACAATGAGGTGAGTAT	0.463													32	86					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104064570	104064570	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104064570C>T	uc001tjw.2	+	22	2542	c.2356C>T	c.(2356-2358)CCT>TCT	p.P786S		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	786	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TAAATACGGACCTCGGTGTAA	0.557													4	22					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104067702	104067702	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104067702G>A	uc001tjw.2	+	23	2575	c.2389G>A	c.(2389-2391)GGA>AGA	p.G797R		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	797	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GTGCGTTCACGGAACATGCAA	0.592													12	47					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104071293	104071293	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104071293G>A	uc001tjw.2	+	25	2895	c.2709G>A	c.(2707-2709)GGG>GGA	p.G903G		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	903	Extracellular (Potential).|EGF-like 8.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GTTGGACAGGGAATGGGAGAG	0.572													30	103					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104081960	104081960	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104081960C>T	uc001tjw.2	+	28	3198	c.3012C>T	c.(3010-3012)CTC>CTT	p.L1004L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1004	Extracellular (Potential).|FAS1 3.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGTCATTTCTCTCCGAAGCAG	0.378													53	103					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104099448	104099448	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104099448C>T	uc001tjw.2	+	37	4125	c.3939C>T	c.(3937-3939)TTC>TTT	p.F1313F		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1313	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCTCCTATTTCATGGGAAGAC	0.403													14	46					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104122736	104122736	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104122736C>T	uc001tjw.2	+	48	5231	c.5045C>T	c.(5044-5046)TCC>TTC	p.S1682F	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1682	Extracellular (Potential).|FAS1 5.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AATGCTACTTCCCTCCAAGGA	0.433													32	83					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104144428	104144428	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104144428C>T	uc001tjw.2	+	60	6696	c.6510C>T	c.(6508-6510)CCC>CCT	p.P2170P	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2170	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGCAGCTGCCCATTGACCGCT	0.552													18	52					0	0	1	0	0
NT5DC3	51559	broad.mit.edu	37	12	104190698	104190698	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104190698G>A	uc010swe.1	-	6	768	c.727C>T	c.(727-729)CCT>TCT	p.P243S		NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	243							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						AGATGCACAGGCTCATAGTCG	0.468													26	134					0	0	1	0	0
TDG	6996	broad.mit.edu	37	12	104370702	104370702	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104370702C>T	uc001tkg.2	+	2	253	c.30C>T	c.(28-30)TCC>TCT	p.S10S	TDG_uc010swh.1_Silent_p.S10S|TDG_uc009zuk.2_Silent_p.S6S|TDG_uc010swi.1_Intron|TDG_uc010swj.1_5'Flank	NM_003211	NP_003202	Q13569	TDG_HUMAN	thymine-DNA glycosylase	10					depyrimidination|mismatch repair	nucleoplasm	damaged DNA binding|mismatched DNA binding|protein binding|pyrimidine-specific mismatch base pair DNA N-glycosylase activity			ovary(3)|lung(3)	6				BRCA - Breast invasive adenocarcinoma(302;0.00114)		TCAGCTATTCCCTTCAGCAAG	0.353								BER_DNA_glycosylases					15	40					0	0	1	0	0
TDG	6996	broad.mit.edu	37	12	104376924	104376924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104376924C>T	uc001tkg.2	+	6	848	c.625C>T	c.(625-627)CGT>TGT	p.R209C	TDG_uc009zuk.2_Missense_Mutation_p.R205C|TDG_uc010swi.1_Missense_Mutation_p.R66C|TDG_uc010swj.1_Intron	NM_003211	NP_003202	Q13569	TDG_HUMAN	thymine-DNA glycosylase	209					depyrimidination|mismatch repair	nucleoplasm	damaged DNA binding|mismatched DNA binding|protein binding|pyrimidine-specific mismatch base pair DNA N-glycosylase activity			ovary(3)|lung(3)	6				BRCA - Breast invasive adenocarcinoma(302;0.00114)		TAAAGAATTTCGTGAAGGAGG	0.249								BER_DNA_glycosylases					39	146					0	0	1	0	0
GLT8D2	83468	broad.mit.edu	37	12	104387256	104387256	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104387256C>T	uc001tkh.1	-	10	1200	c.794G>A	c.(793-795)GGA>GAA	p.G265E	GLT8D2_uc001tki.1_Missense_Mutation_p.G265E	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	265	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						CACCCCTCCTCCCAGGGAGCT	0.458													5	40					0	0	1	0	0
GLT8D2	83468	broad.mit.edu	37	12	104387281	104387281	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104387281C>T	uc001tkh.1	-	10	1175	c.769G>A	c.(769-771)GAA>AAA	p.E257K	GLT8D2_uc001tki.1_Missense_Mutation_p.E257K	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	257	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						TAGAGGTTTTCCCTAAGAAAT	0.438													9	25					0	0	1	0	0
TXNRD1	7296	broad.mit.edu	37	12	104705146	104705146	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:104705146C>T	uc010swk.1	+	5	515	c.493C>T	c.(493-495)CTT>TTT	p.L165F	TXNRD1_uc010swl.1_Missense_Mutation_p.L15F|TXNRD1_uc010swm.1_Missense_Mutation_p.L67F|TXNRD1_uc010swn.1_Missense_Mutation_p.L15F|TXNRD1_uc010swo.1_Missense_Mutation_p.L15F|TXNRD1_uc010swp.1_Intron|TXNRD1_uc010swq.1_Missense_Mutation_p.L65F|TXNRD1_uc001tku.2_RNA|TXNRD1_uc009zun.2_Missense_Mutation_p.L81F|TXNRD1_uc001tko.1_RNA|TXNRD1_uc001tkp.1_RNA|TXNRD1_uc001tkv.1_RNA	NM_001093771	NP_001087240	Q16881	TRXR1_HUMAN	thioredoxin reductase 1 isoform 3	165					cell redox homeostasis|cellular lipid metabolic process|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|signal transduction|transport	cytosol|nucleolus	electron carrier activity|flavin adenine dinucleotide binding|NADP binding|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity				0						TGACTATGACCTTATCATCAT	0.443													3	20					0	0	1	0	0
CHST11	50515	broad.mit.edu	37	12	105151002	105151002	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:105151002C>T	uc001tkx.1	+	4	771	c.480C>T	c.(478-480)AAC>AAT	p.N160N	CHST11_uc001tky.2_Silent_p.N155N|uc001tkz.2_5'Flank	NM_018413	NP_060883	Q9NPF2	CHSTB_HUMAN	carbohydrate sulfotransferase 11	160	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity				0						TCTCCGCCAACCTGAAGACCC	0.582													17	54					0	0	1	0	0
SLC41A2	84102	broad.mit.edu	37	12	105199034	105199034	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:105199034G>A	uc001tla.2	-	10	1785	c.1618C>T	c.(1618-1620)CCC>TCC	p.P540S		NM_032148	NP_115524	Q96JW4	S41A2_HUMAN	solute carrier family 41, member 2	540	Extracellular.					integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			ovary(1)|skin(1)	2						GTTAGGTAGGGGATGGAGAAA	0.463													29	256					0	0	1	0	0
NUAK1	9891	broad.mit.edu	37	12	106460850	106460850	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:106460850G>A	uc001tlj.1	-	7	3096	c.1716C>T	c.(1714-1716)ATC>ATT	p.I572I		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	572							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						TGTCATCGCTGATGACACTGG	0.617													18	28					0	0	1	0	0
NUAK1	9891	broad.mit.edu	37	12	106461006	106461006	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:106461006C>T	uc001tlj.1	-	7	2940	c.1560G>A	c.(1558-1560)CGG>CGA	p.R520R		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	520							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						TGCCCTTCCTCCGGCAGGAGA	0.612													19	59					0	0	1	0	0
CKAP4	10970	broad.mit.edu	37	12	106633295	106633295	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:106633295G>A	uc001tlk.2	-	2	1400	c.1316C>T	c.(1315-1317)TCC>TTC	p.S439F		NM_006825	NP_006816	Q07065	CKAP4_HUMAN	cytoskeleton-associated protein 4	439	Potential.					ER-Golgi intermediate compartment membrane|integral to membrane|membrane fraction					0						CTGGCTCTTGGACAGGAGGGA	0.687													9	79					0	0	1	0	0
TCP11L2	255394	broad.mit.edu	37	12	106704939	106704939	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:106704939C>T	uc001tln.2	+	2	260	c.86C>T	c.(85-87)TCG>TTG	p.S29L	TCP11L2_uc001tll.2_Missense_Mutation_p.S29L|TCP11L2_uc001tlm.2_Missense_Mutation_p.S29L|TCP11L2_uc001tlo.1_RNA	NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	29	Ser-rich.									ovary(3)	3						AGCATGGCTTCGCTCAGTGAC	0.542													7	83					0	0	1	0	0
TCP11L2	255394	broad.mit.edu	37	12	106729593	106729593	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:106729593G>A	uc001tln.2	+	7	1123	c.949G>A	c.(949-951)GAA>AAA	p.E317K		NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	317										ovary(3)	3						TCAGAAAAAAGAATTACCAGA	0.388													12	64					0	0	1	0	0
TCP11L2	255394	broad.mit.edu	37	12	106740156	106740156	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:106740156C>T	uc001tln.2	+	10	1582	c.1408C>T	c.(1408-1410)CAG>TAG	p.Q470*		NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	470										ovary(3)	3						AGCTGTCATTCAGCAGGAGCT	0.428													10	33					0	0	1	0	0
POLR3B	55703	broad.mit.edu	37	12	106772153	106772153	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:106772153C>T	uc001tlp.2	+	8	827	c.605C>T	c.(604-606)TCA>TTA	p.S202L	POLR3B_uc001tlq.2_Missense_Mutation_p.S144L	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	202					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						GTTGGAGCTTCAGTTACCAGG	0.408													50	102					0	0	1	0	0
POLR3B	55703	broad.mit.edu	37	12	106824192	106824192	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:106824192C>T	uc001tlp.2	+	14	1627	c.1405C>T	c.(1405-1407)CGC>TGC	p.R469C	POLR3B_uc001tlq.2_Missense_Mutation_p.R411C	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	469					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						GAGTGGTCCTCGCTCCCTCCA	0.493													22	107					0	0	1	0	0
RFX4	5992	broad.mit.edu	37	12	107113782	107113782	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:107113782G>A	uc001tlr.2	+	12	1249	c.1183G>A	c.(1183-1185)GAG>AAG	p.E395K	RFX4_uc001tls.2_Missense_Mutation_p.E404K|RFX4_uc001tlt.2_Missense_Mutation_p.E404K|RFX4_uc001tlv.2_Missense_Mutation_p.E301K	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c	395	Necessary for dimerization.				transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						GTCTCCCATCGAGTCCTACAT	0.527													31	76					0	0	1	0	0
RFX4	5992	broad.mit.edu	37	12	107125991	107125991	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:107125991G>A	uc001tlr.2	+	14	1501	c.1435G>A	c.(1435-1437)GAG>AAG	p.E479K	RFX4_uc001tls.2_Missense_Mutation_p.E488K|RFX4_uc001tlt.2_Missense_Mutation_p.E488K|RFX4_uc001tlv.2_Missense_Mutation_p.E385K	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c	479	Necessary for dimerization.				transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						GCGGGCCAATGAGCTCATGCG	0.448													31	118					0	0	1	0	0
CRY1	1407	broad.mit.edu	37	12	107393622	107393622	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:107393622G>A	uc001tmi.3	-	7	1703	c.844C>T	c.(844-846)CCT>TCT	p.P282S		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	282	FAD-binding.				DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						GAAAGGGGAGGGGAACTGTTC	0.333													25	49					0	0	1	0	0
CRY1	1407	broad.mit.edu	37	12	107395596	107395596	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:107395596G>A	uc001tmi.3	-	4	1400	c.541C>T	c.(541-543)CCT>TCT	p.P181S		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	181					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						TCAGACAGAGGAGTTGTGCAC	0.398													45	139					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	107914285	107914285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:107914285G>A	uc001tmk.1	+	2	1678	c.1157G>A	c.(1156-1158)AGC>AAC	p.S386N	BTBD11_uc009zut.1_Missense_Mutation_p.S386N|BTBD11_uc001tmj.2_Missense_Mutation_p.S386N	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	386						integral to membrane	DNA binding			skin(2)|ovary(1)	3						CTACCAGACAGCCTGAATCTT	0.527													30	125					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	107914328	107914329	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:107914328_107914329GG>AA	uc001tmk.1	+	2	1721_1722	c.1200_1201GG>AA	c.(1198-1203)GGGGAA>GGAAAA	p.E401K	BTBD11_uc009zut.1_Missense_Mutation_p.E401K|BTBD11_uc001tmj.2_Missense_Mutation_p.E401K	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	401						integral to membrane	DNA binding			skin(2)|ovary(1)	3						ACAAGCCAGGGGAACTGCCCAT	0.55													16	126					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	107914337	107914337	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:107914337C>T	uc001tmk.1	+	2	1730	c.1209C>T	c.(1207-1209)CCC>CCT	p.P403P	BTBD11_uc009zut.1_Silent_p.P403P|BTBD11_uc001tmj.2_Silent_p.P403P	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	403						integral to membrane	DNA binding			skin(2)|ovary(1)	3						GGGAACTGCCCATGTTCAGCC	0.567													13	128					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108006601	108006601	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108006601G>A	uc001tmk.1	+	6	2375	c.1854G>A	c.(1852-1854)GCG>GCA	p.A618A	BTBD11_uc009zut.1_Silent_p.A618A|BTBD11_uc001tmj.2_Silent_p.A618A|BTBD11_uc001tml.1_Silent_p.A155A	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	618	ANK 1.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						GGGACGAGGCGATGGTTCAGA	0.602													7	22					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108010940	108010940	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108010940C>T	uc001tmk.1	+	8	2597	c.2076C>T	c.(2074-2076)CTC>CTT	p.L692L	BTBD11_uc009zut.1_Silent_p.L692L|BTBD11_uc001tmj.2_Silent_p.L692L|BTBD11_uc001tml.1_Silent_p.L229L	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	692	ANK 3.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						AAACACCCCTCCAGCTGGCAG	0.587													17	106					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108012092	108012092	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108012092G>A	uc001tmk.1	+	10	2910	c.2389G>A	c.(2389-2391)GAG>AAG	p.E797K	BTBD11_uc009zut.1_Intron|BTBD11_uc001tmj.2_Missense_Mutation_p.E797K|BTBD11_uc001tml.1_Missense_Mutation_p.E334K	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	797						integral to membrane	DNA binding			skin(2)|ovary(1)	3						GGCCCTGAGGGAGGCCATGTA	0.627													11	34					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108013806	108013806	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108013806C>T	uc001tmk.1	+	11	3017	c.2496C>T	c.(2494-2496)ATC>ATT	p.I832I	BTBD11_uc009zut.1_Silent_p.I713I|BTBD11_uc001tmj.2_Silent_p.I832I|BTBD11_uc001tml.1_Silent_p.I369I	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	832	ANK 5.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						CTTTGCGGATCGCCTTCCAGC	0.443													5	30					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108013935	108013935	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108013935G>A	uc001tmk.1	+	11	3146	c.2625G>A	c.(2623-2625)GCG>GCA	p.A875A	BTBD11_uc009zut.1_Silent_p.A756A|BTBD11_uc001tmj.2_Silent_p.A875A|BTBD11_uc001tml.1_Silent_p.A412A	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	875						integral to membrane	DNA binding			skin(2)|ovary(1)	3						TCCTGAAAGCGAGCAAGGTAT	0.507													9	77					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108051462	108051462	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108051462C>T	uc001tmk.1	+	17	3803	c.3282C>T	c.(3280-3282)ATC>ATT	p.I1094I	BTBD11_uc001tml.1_Silent_p.I631I|BTBD11_uc001tmm.1_Silent_p.I173I	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	1094						integral to membrane	DNA binding			skin(2)|ovary(1)	3						TTCAGTCCATCCACTTGTCGT	0.507													24	56					0	0	1	0	0
WSCD2	9671	broad.mit.edu	37	12	108618544	108618544	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108618544C>T	uc001tms.2	+	5	1455	c.711C>T	c.(709-711)TTC>TTT	p.F237F	WSCD2_uc001tmt.2_Silent_p.F237F|WSCD2_uc001tmu.2_5'UTR	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	237	WSC 2.					integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						GGGGCTGCTTCCGCAGGCCCG	0.527													27	93					0	0	1	0	0
CMKLR1	1240	broad.mit.edu	37	12	108686626	108686626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108686626C>T	uc009zuw.2	-	3	305	c.114G>A	c.(112-114)GTG>GTA	p.V38V	CMKLR1_uc001tmw.2_Silent_p.V38V|CMKLR1_uc001tmv.2_Silent_p.V36V|CMKLR1_uc009zuv.2_Silent_p.V38V	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	38	Extracellular (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						AGATCCTGGTCACCCTGGCTT	0.473													20	47					0	0	1	0	0
SART3	9733	broad.mit.edu	37	12	108919251	108919251	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108919251G>A	uc001tmz.1	-	17	2741	c.2506C>T	c.(2506-2508)CGG>TGG	p.R836W	SART3_uc001tmy.1_Missense_Mutation_p.R362W|SART3_uc009zux.1_Missense_Mutation_p.R448W|SART3_uc010swx.1_Missense_Mutation_p.R800W	NM_014706	NP_055521	Q15020	SART3_HUMAN	squamous cell carcinoma antigen recognized by T	836	RRM 2.				RNA processing	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding			pancreas(1)	1						TTGCCAGCCCGGTTGGTGACC	0.493									Porokeratosis				23	46					0	0	1	0	0
SART3	9733	broad.mit.edu	37	12	108919967	108919967	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108919967A>G	uc001tmz.1	-	16	2514	c.2279T>C	c.(2278-2280)CTT>CCT	p.L760P	SART3_uc001tmy.1_Missense_Mutation_p.L286P|SART3_uc009zux.1_Missense_Mutation_p.L372P|SART3_uc010swx.1_Missense_Mutation_p.L724P|SART3_uc010swy.1_Missense_Mutation_p.L646P|SART3_uc010swz.1_3'UTR	NM_014706	NP_055521	Q15020	SART3_HUMAN	squamous cell carcinoma antigen recognized by T	760	RRM 1.				RNA processing	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding			pancreas(1)	1						CAGTGCCTGAAGGGCTGATTT	0.507									Porokeratosis				16	139					0	0	1	0	0
TMEM119	338773	broad.mit.edu	37	12	108985509	108985509	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108985509C>T	uc001tng.2	-	2	814	c.651G>A	c.(649-651)CAG>CAA	p.Q217Q	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	217	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						CCTGGACTTCCTGGTCCCCCT	0.697													12	79					0	0	1	0	0
TMEM119	338773	broad.mit.edu	37	12	108985516	108985517	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:108985516_108985517CC>TT	uc001tng.2	-	2	806_807	c.643_644GG>AA	c.(643-645)GGG>AAG	p.G215K	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	215	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						TTCCTGGTCCCCCTCCTGGCTG	0.688													25	63					0	0	1	0	0
SELPLG	6404	broad.mit.edu	37	12	109017754	109017754	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109017754C>T	uc001tni.2	-	2	490	c.330G>A	c.(328-330)GGG>GGA	p.G110G	SELPLG_uc001tnh.2_Silent_p.G110G|SELPLG_uc010sxe.1_Silent_p.G126G	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	110	Extracellular (Potential).				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						TGGACAGGTTCCCCATGTTGG	0.607													27	50					0	0	1	0	0
SSH1	54434	broad.mit.edu	37	12	109182393	109182393	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109182393G>A	uc001tnm.2	-	15	2608	c.2521C>T	c.(2521-2523)CCT>TCT	p.P841S	SSH1_uc001tnl.2_Missense_Mutation_p.P529S	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	841					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						CTGGAGGGAGGTGCTGGGTCT	0.657													24	35					0	0	1	0	0
DAO	1610	broad.mit.edu	37	12	109283259	109283259	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109283259G>A	uc001tnr.3	+	4	477	c.324G>A	c.(322-324)AAG>AAA	p.K108K	DAO_uc001tnq.3_Intron|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	108					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						CTTCCTGGAAGGACACAGTTC	0.448													18	65					0	0	1	0	0
DAO	1610	broad.mit.edu	37	12	109293228	109293228	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109293228C>T	uc001tnr.3	+	10	1042	c.889C>T	c.(889-891)CGC>TGC	p.R297C	DAO_uc001tnq.3_Missense_Mutation_p.R231C|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	297					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						AGAACAGCTTCGCACTGGACC	0.498													15	29					0	0	1	0	0
SVOP	55530	broad.mit.edu	37	12	109309618	109309618	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109309618G>A	uc010sxh.1	-	14	1553	c.1381C>T	c.(1381-1383)CTG>TTG	p.L461L		NM_018711	NP_061181	Q8N4V2	SVOP_HUMAN	SV2 related protein	461	Helical; (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	ion transmembrane transporter activity				0						CAGGTGCCCAGGCCGAGGGCC	0.622													3	20					0	0	1	0	0
USP30	84749	broad.mit.edu	37	12	109509423	109509423	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109509423C>T	uc010sxi.1	+	5	591	c.487C>T	c.(487-489)CAC>TAC	p.H163Y	USP30_uc001tnu.3_Missense_Mutation_p.H132Y	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	163	Cytoplasmic (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						ACAGGATGCTCACGAATTATT	0.493													23	39					0	0	1	0	0
USP30	84749	broad.mit.edu	37	12	109511303	109511303	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109511303C>T	uc010sxi.1	+	7	790	c.686C>T	c.(685-687)ACT>ATT	p.T229I	USP30_uc001tnu.3_Missense_Mutation_p.T198I	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	229	Cytoplasmic (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						GGAAGACTCACTAGTAATATG	0.403													13	54					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109629448	109629448	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109629448C>T	uc001tob.2	+	14	2294	c.2175C>T	c.(2173-2175)TCC>TCT	p.S725S	ACACB_uc001toc.2_Silent_p.S725S	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	725	Biotin carboxylation.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	AGGAACTGTCCATCCGAGGCG	0.488													16	82					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109677760	109677760	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109677760C>T	uc001tob.2	+	35	4907	c.4788C>T	c.(4786-4788)TTC>TTT	p.F1596F	ACACB_uc001toc.2_Silent_p.F1596F|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Silent_p.F262F	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1596					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TCCTCAACTTCGTGCCCACTG	0.607													45	61					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109683539	109683539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109683539C>T	uc001tob.2	+	38	5406	c.5287C>T	c.(5287-5289)CCT>TCT	p.P1763S	ACACB_uc001toc.2_Missense_Mutation_p.P1763S|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.P429S	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1763					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GAACCGACTTCCTGGTGGAAA	0.428													24	67					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109685438	109685438	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109685438C>T	uc001tob.2	+	40	5718	c.5599C>T	c.(5599-5601)CAA>TAA	p.Q1867*	ACACB_uc001toc.2_Nonsense_Mutation_p.Q1867*|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Nonsense_Mutation_p.Q533*	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1867	Carboxyltransferase.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CCTGACTCCCCAAGACTACAC	0.418													50	139					0	0	1	0	0
FOXN4	121643	broad.mit.edu	37	12	109717725	109717725	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109717725C>T	uc001toe.3	-	10	1410	c.1305G>A	c.(1303-1305)TGG>TGA	p.W435*	FOXN4_uc009zvg.2_Nonsense_Mutation_p.W232*|FOXN4_uc001tof.3_Nonsense_Mutation_p.W255*	NM_213596	NP_998761	Q96NZ1	FOXN4_HUMAN	forkhead box N4	435					axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|lung(1)	2						TCATCTCCTCCCACAGGTTCC	0.557													10	41					0	0	1	0	0
FOXN4	121643	broad.mit.edu	37	12	109723224	109723224	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109723224G>A	uc001toe.3	-	8	891	c.786C>T	c.(784-786)TCC>TCT	p.S262S	FOXN4_uc009zvg.2_Silent_p.S59S|FOXN4_uc001tof.3_Silent_p.S82S	NM_213596	NP_998761	Q96NZ1	FOXN4_HUMAN	forkhead box N4	262	Fork-head.				axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|lung(1)	2						AGCCCTTGCGGGAGGAGCCGC	0.602													19	53					0	0	1	0	0
MYO1H	283446	broad.mit.edu	37	12	109844602	109844602	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109844602G>A	uc010sxn.1	+	8	924	c.924G>A	c.(922-924)GGG>GGA	p.G308G		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						AGCTCCTGGGGGTCCACCCAT	0.378													21	57					0	0	1	0	0
MYO1H	283446	broad.mit.edu	37	12	109865299	109865299	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109865299G>A	uc010sxn.1	+	18	1809	c.1809G>A	c.(1807-1809)AGG>AGA	p.R603R		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						TCCTCATAAGGCATCAGATCA	0.433													69	177					0	0	1	0	0
MYO1H	283446	broad.mit.edu	37	12	109881406	109881406	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109881406G>A	uc010sxo.1	+	5	576	c.301G>A	c.(301-303)GTG>ATG	p.V101M	MYO1H_uc010sxn.1_Missense_Mutation_p.V910M			Q8N1T3	MYO1H_HUMAN	SubName: Full=cDNA FLJ54829, moderately similar to Myosin Ic; SubName: Full=Myosin IH, isoform CRA_a;	101						myosin complex	motor activity				0						AGCTTACGTGGTGGAACTTGC	0.443													10	20					0	0	1	0	0
UBE3B	89910	broad.mit.edu	37	12	109935691	109935691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109935691C>T	uc001top.2	+	10	1385	c.782C>T	c.(781-783)CCT>CTT	p.P261L	UBE3B_uc001toq.2_Missense_Mutation_p.P261L|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Missense_Mutation_p.P261L	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	261					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						ATGTCTGTGCCTGCTCTGGTG	0.478													29	89					0	0	1	0	0
UBE3B	89910	broad.mit.edu	37	12	109937499	109937499	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:109937499C>T	uc001top.2	+	12	1605	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	UBE3B_uc001toq.2_Silent_p.F334F|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Silent_p.F334F	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	334					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						CAGATGGGTTCGTGAGTTTGC	0.557													8	36					0	0	1	0	0
MMAB	326625	broad.mit.edu	37	12	110009504	110009504	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:110009504G>A	uc001tou.2	-	2	219	c.146C>T	c.(145-147)TCC>TTC	p.S49F	MMAB_uc001tov.2_RNA|MMAB_uc001tow.2_Intron|MMAB_uc010sxq.1_5'UTR|MMAB_uc001tox.2_Intron|MVK_uc001toy.3_5'Flank|MVK_uc009zvk.2_5'Flank|MVK_uc010sxr.1_5'Flank|MVK_uc001toz.3_5'Flank	NM_052845	NP_443077	Q96EY8	MMAB_HUMAN	cob(I)alamin adenosyltransferase precursor	49					cobalamin biosynthetic process	mitochondrion	ATP binding|cob(I)yrinic acid a,c-diamide adenosyltransferase activity				0					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TGTCTTCGAGGAAGGCTGTGG	0.498													9	36					0	0	1	0	0
TRPV4	59341	broad.mit.edu	37	12	110226283	110226283	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:110226283G>A	uc001tpj.1	-	12	2225	c.2130C>T	c.(2128-2130)CTC>CTT	p.L710L	TRPV4_uc001tpg.1_Silent_p.L676L|TRPV4_uc001tph.1_Silent_p.L663L|TRPV4_uc001tpi.1_Silent_p.L603L|TRPV4_uc001tpk.1_Silent_p.L710L|TRPV4_uc001tpl.1_Silent_p.L650L	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	710	Helical; (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GCATGTTGAGGAGCAGCACAA	0.602													22	66					0	0	1	0	0
TRPV4	59341	broad.mit.edu	37	12	110232227	110232227	+	Silent	SNP	G	A	A	rs146929022		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:110232227G>A	uc001tpj.1	-	7	1493	c.1398C>T	c.(1396-1398)TTC>TTT	p.F466F	TRPV4_uc001tpg.1_Silent_p.F432F|TRPV4_uc001tph.1_Silent_p.F419F|TRPV4_uc001tpi.1_Silent_p.F359F|TRPV4_uc001tpk.1_Silent_p.F466F|TRPV4_uc001tpl.1_Silent_p.F406F	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	466	Helical; (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						AGACGGCCCCGAACTTGCGCC	0.602													48	108					0	0	1	0	0
GIT2	9815	broad.mit.edu	37	12	110399131	110399131	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:110399131G>A	uc001tps.2	-	11	1104	c.939C>T	c.(937-939)GTC>GTT	p.V313V	GIT2_uc001tpq.2_Silent_p.V313V|GIT2_uc001tpv.2_Silent_p.V315V|GIT2_uc001tpu.2_Silent_p.V313V|GIT2_uc001tpt.2_Silent_p.V313V|GIT2_uc010sxu.1_Silent_p.V251V|GIT2_uc001tpw.2_Silent_p.V313V|GIT2_uc010sxv.1_Silent_p.V313V	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	313					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						GAAAGGGGACGACCGTTGTCT	0.517													23	43					0	0	1	0	0
GIT2	9815	broad.mit.edu	37	12	110418764	110418764	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:110418764C>T	uc001tps.2	-	7	876	c.711G>A	c.(709-711)AGG>AGA	p.R237R	GIT2_uc001tpq.2_Silent_p.R237R|GIT2_uc001tpv.2_Silent_p.R237R|GIT2_uc001tpu.2_Silent_p.R237R|GIT2_uc001tpt.2_Silent_p.R237R|GIT2_uc010sxu.1_Silent_p.R175R|GIT2_uc001tpw.2_Silent_p.R237R|GIT2_uc010sxv.1_Silent_p.R237R	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	237					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						CACCTGGTTTCCTGCCACAGA	0.488													70	254					0	0	1	0	0
ANKRD13A	88455	broad.mit.edu	37	12	110463606	110463607	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:110463606_110463607GG>AA	uc001tpx.2	+	8	1120_1121	c.861_862GG>AA	c.(859-864)GAGGAG>GAAAAG	p.E288K	ANKRD13A_uc009zvl.1_RNA|ANKRD13A_uc010sxw.1_Missense_Mutation_p.E288K|ANKRD13A_uc001tpy.2_5'UTR|ANKRD13A_uc001tpz.2_5'Flank	NM_033121	NP_149112	Q8IZ07	AN13A_HUMAN	ankyrin repeat domain 13	288											0						ATCTGACCGAGGAGGAAAAAAA	0.411													43	95					0	0	1	0	0
C12orf76	400073	broad.mit.edu	37	12	110495058	110495058	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:110495058G>A	uc001tqd.1	-	4	600	c.235C>T	c.(235-237)CCT>TCT	p.P79S	C12orf76_uc001tqe.1_RNA|C12orf76_uc010sxx.1_RNA|uc001tqf.1_Intron	NM_207435	NP_997318	Q8N812	CL076_HUMAN	hypothetical protein LOC400073	79										large_intestine(1)	1						AGCTCTGCAGGGAGGATGTGC	0.502													16	34					0	0	1	0	0
GPN3	51184	broad.mit.edu	37	12	110895368	110895368	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:110895368G>A	uc001tqr.2	-	4	453	c.397C>T	c.(397-399)CGA>TGA	p.R133*	GPN3_uc001tqs.2_Nonsense_Mutation_p.R143*	NM_016301	NP_057385	Q9UHW5	GPN3_HUMAN	GPN-loop GTPase 3 isoform 1	133						protein complex	GTP binding				0						CCACAGACTCGGAACTCCCAC	0.393													19	43					0	0	1	0	0
GPN3	51184	broad.mit.edu	37	12	110895370	110895370	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:110895370A>G	uc001tqr.2	-	4	451	c.395T>C	c.(394-396)TTC>TCC	p.F132S	GPN3_uc001tqs.2_Missense_Mutation_p.F142S	NM_016301	NP_057385	Q9UHW5	GPN3_HUMAN	GPN-loop GTPase 3 isoform 1	132						protein complex	GTP binding				0						ACAGACTCGGAACTCCCACTG	0.393													20	43					0	0	1	0	0
TCTN1	79600	broad.mit.edu	37	12	111057732	111057732	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111057732C>T	uc009zvs.2	+	2	420	c.312C>T	c.(310-312)GTC>GTT	p.V104V	TCTN1_uc010syb.1_Silent_p.V104V|TCTN1_uc009zvr.1_RNA|TCTN1_uc001trl.2_RNA|TCTN1_uc001trm.2_Silent_p.V44V|TCTN1_uc010syc.1_RNA|TCTN1_uc001tro.2_RNA|TCTN1_uc001trp.3_Silent_p.V104V|TCTN1_uc001trn.3_Silent_p.V104V|TCTN1_uc001tri.2_Silent_p.V48V|TCTN1_uc001trj.1_Silent_p.V48V|TCTN1_uc001trk.3_RNA	NM_001082537	NP_001076006	Q2MV58	TECT1_HUMAN	tectonic family member 1 isoform 2	104					multicellular organismal development	extracellular region					0						ATTTCAGTGTCTTTTCTGCCT	0.438													38	113					0	0	1	0	0
TCTN1	79600	broad.mit.edu	37	12	111078277	111078277	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111078277C>T	uc009zvs.2	+	8	1041	c.933C>T	c.(931-933)CTC>CTT	p.L311L	TCTN1_uc009zvr.1_RNA|TCTN1_uc001trl.2_RNA|TCTN1_uc001trm.2_Silent_p.L251L|TCTN1_uc010syc.1_RNA|TCTN1_uc001tro.2_RNA|TCTN1_uc001trp.3_Silent_p.L297L|TCTN1_uc001trn.3_Silent_p.L311L|TCTN1_uc001trj.1_Silent_p.L255L|TCTN1_uc001trk.3_RNA|HVCN1_uc001trq.1_Intron	NM_001082537	NP_001076006	Q2MV58	TECT1_HUMAN	tectonic family member 1 isoform 2	311					multicellular organismal development	extracellular region					0						AGCCGACTCTCGTCAACGCTG	0.507													28	52					0	0	1	0	0
CCDC63	160762	broad.mit.edu	37	12	111311669	111311669	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111311669C>T	uc001trv.1	+	5	588	c.393C>T	c.(391-393)ATC>ATT	p.I131I	CCDC63_uc009zvt.1_Silent_p.I46I|CCDC63_uc010sye.1_Silent_p.I91I|CCDC63_uc001trw.1_Silent_p.I46I	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	131	Potential.									skin(6)|ovary(1)|pancreas(1)	8						AAAAAAAAATCGCAAACCAAA	0.403													30	64					0	0	1	0	0
CCDC63	160762	broad.mit.edu	37	12	111317719	111317719	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111317719C>T	uc001trv.1	+	6	694	c.499C>T	c.(499-501)CAC>TAC	p.H167Y	CCDC63_uc009zvt.1_Intron|CCDC63_uc010sye.1_Missense_Mutation_p.H127Y|CCDC63_uc001trw.1_Missense_Mutation_p.H82Y	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	167	Potential.									skin(6)|ovary(1)|pancreas(1)	8						GGTCACTGTTCACTTTGACAA	0.468													44	128					0	0	1	0	0
CCDC63	160762	broad.mit.edu	37	12	111319010	111319010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111319010C>T	uc001trv.1	+	7	958	c.763C>T	c.(763-765)CTC>TTC	p.L255F	CCDC63_uc009zvt.1_Missense_Mutation_p.S109F|CCDC63_uc010sye.1_Missense_Mutation_p.L215F|CCDC63_uc001trw.1_Missense_Mutation_p.L170F	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	255	Potential.									skin(6)|ovary(1)|pancreas(1)	8						GCTGGAGCGTCTCTATGCCCA	0.552													11	30					0	0	1	0	0
CCDC63	160762	broad.mit.edu	37	12	111342415	111342415	+	Missense_Mutation	SNP	G	A	A	rs138877502		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111342415G>A	uc001trv.1	+	11	1561	c.1366G>A	c.(1366-1368)GAC>AAC	p.D456N	CCDC63_uc010sye.1_Missense_Mutation_p.D416N|CCDC63_uc001trw.1_Missense_Mutation_p.D371N	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	456								p.D456N(1)		skin(6)|ovary(1)|pancreas(1)	8						GAAGACCAACGACCTGCTGCT	0.597													32	90					0	0	1	0	0
MYL2	4633	broad.mit.edu	37	12	111353546	111353546	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111353546C>T	uc001try.3	-	3	213	c.142G>A	c.(142-144)GAT>AAT	p.D48N	MYL2_uc001trx.3_Missense_Mutation_p.D29N	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2	48	|EF-hand 1.				cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						TCTCTCAGATCGTTCTTGTCA	0.527													59	128					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111744784	111744784	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111744784G>T	uc001tsa.1	+	11	1071	c.918G>T	c.(916-918)AAG>AAT	p.K306N		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	306	Potential.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TGGCCTCCAAGGACAGGGAGA	0.642													31	77					1.61788e-16	1.62548e-16	1	1	0
CUX2	23316	broad.mit.edu	37	12	111748007	111748007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111748007G>A	uc001tsa.1	+	15	1574	c.1421G>A	c.(1420-1422)CGG>CAG	p.R474Q		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	474	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GACGGCACTCGGACTTTCTCG	0.697													4	12					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111748180	111748180	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111748180G>C	uc001tsa.1	+	15	1747	c.1594G>C	c.(1594-1596)GGT>CGT	p.G532R		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	532	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCCACTGGGCGGTCCTGAGCC	0.741													3	20					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111748289	111748289	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111748289A>T	uc001tsa.1	+	15	1856	c.1703A>T	c.(1702-1704)AAA>ATA	p.K568I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	568	CUT 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CAGCTGCTGAAACACAACATC	0.687													35	80					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111772339	111772339	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111772339G>A	uc001tsa.1	+	19	3174	c.3021G>A	c.(3019-3021)GAG>GAA	p.E1007E		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1007						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TGTCCCTGGAGAGCAGCAAGG	0.652													16	41					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111779604	111779604	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111779604G>A	uc001tsa.1	+	21	3559	c.3406G>A	c.(3406-3408)GGC>AGC	p.G1136S		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1136						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						ACGTCGCTATGGCCTCATCAG	0.642													46	84					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111779739	111779739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111779739G>A	uc001tsa.1	+	21	3694	c.3541G>A	c.(3541-3543)GAG>AAG	p.E1181K		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1181	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CGAGGAGAAGGAGGCACTGCG	0.642													7	89					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111785346	111785346	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111785346G>A	uc001tsa.1	+	22	3831	c.3678G>A	c.(3676-3678)GAG>GAA	p.E1226E		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1226	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TGCGCCGGGAGATGTTGGTGG	0.652													36	128					0	0	1	0	0
FAM109A	144717	broad.mit.edu	37	12	111801115	111801115	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111801115G>A	uc001tsd.3	-	3	508	c.117C>T	c.(115-117)TTC>TTT	p.F39F	FAM109A_uc009zvu.2_Missense_Mutation_p.S20L|FAM109A_uc001tsc.2_Silent_p.F62F	NM_144671	NP_653272	Q8N4B1	SESQ1_HUMAN	hypothetical protein LOC144717	39	PH.				endosome organization|receptor recycling|retrograde transport, endosome to Golgi	clathrin-coated vesicle|early endosome|recycling endosome|trans-Golgi network	protein homodimerization activity				0						CGCGCAGCACGAACCAGCGCC	0.662													7	34					0	0	1	0	0
ATXN2	6311	broad.mit.edu	37	12	111923659	111923659	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:111923659G>A	uc001tsj.2	-	17	2957	c.2795C>T	c.(2794-2796)TCT>TTT	p.S932F	ATXN2_uc001tsh.2_Missense_Mutation_p.S667F|ATXN2_uc001tsi.2_Missense_Mutation_p.S643F|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsg.2_Missense_Mutation_p.S118F	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	932	Pro-rich.				cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						TGGGGTAGTAGAAGGCTTTGG	0.398													13	38					0	0	1	0	0
ACAD10	80724	broad.mit.edu	37	12	112167654	112167654	+	Nonsense_Mutation	SNP	C	T	T	rs146335507		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:112167654C>T	uc001tsq.2	+	10	1488	c.1288C>T	c.(1288-1290)CGA>TGA	p.R430*	ACAD10_uc001tsp.2_Nonsense_Mutation_p.R430*|ACAD10_uc009zvx.2_Nonsense_Mutation_p.R461*|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	430							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						TAAGCAGTATCGAGCTTCCGA	0.542													16	55					0	0	1	0	0
ACAD10	80724	broad.mit.edu	37	12	112185104	112185104	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:112185104C>T	uc001tsq.2	+	16	2600	c.2400C>T	c.(2398-2400)GCC>GCT	p.A800A	ACAD10_uc001tsp.2_Silent_p.A800A|ACAD10_uc009zvx.2_Silent_p.A831A|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	800	FAD (By similarity).						acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						CTCAGGTTGCCTCTTCAGATG	0.542													40	57					0	0	1	0	0
ACAD10	80724	broad.mit.edu	37	12	112194227	112194227	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:112194227G>A	uc001tsq.2	+	21	3330	c.3130G>A	c.(3130-3132)GAG>AAG	p.E1044K	ACAD10_uc009zvx.2_Missense_Mutation_p.E1075K|ACAD10_uc001tss.1_Intron	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	1044		FAD (By similarity).					acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						CGGCCCTGACGAGGTGCACCG	0.647													4	11					0	0	1	0	0
ALDH2	217	broad.mit.edu	37	12	112219820	112219820	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:112219820G>A	uc001tst.2	+	2	654	c.213G>A	c.(211-213)GGG>GGA	p.G71G	ALDH2_uc010syi.1_Silent_p.G71G|ALDH2_uc009zvy.2_Silent_p.G71G	NM_000690	NP_000681	P05091	ALDH2_HUMAN	mitochondrial aldehyde dehydrogenase 2	71					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase|electron carrier activity			skin(2)|ovary(1)|central_nervous_system(1)	4					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	TAGCTGAAGGGGACAAGGTGA	0.448			T	HMGA2	leiomyoma								15	47					0	0	1	0	0
RPH3A	22895	broad.mit.edu	37	12	113285537	113285537	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113285537G>A	uc010syl.1	+	5	482	c.120G>A	c.(118-120)CAG>CAA	p.Q40Q	RPH3A_uc001ttz.2_Silent_p.Q40Q|RPH3A_uc001tty.2_Silent_p.Q36Q|RPH3A_uc009zwe.1_Silent_p.Q36Q|RPH3A_uc010sym.1_Intron	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	40					intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		CCGGTGGTCAGCCTGACAGGC	0.483													39	78					0	0	1	0	0
RPH3A	22895	broad.mit.edu	37	12	113285641	113285641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113285641G>A	uc010syl.1	+	5	586	c.224G>A	c.(223-225)CGA>CAA	p.R75Q	RPH3A_uc001ttz.2_Missense_Mutation_p.R75Q|RPH3A_uc001tty.2_Missense_Mutation_p.R71Q|RPH3A_uc009zwe.1_Missense_Mutation_p.R71Q|RPH3A_uc010sym.1_Intron	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	75	RabBD.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		GAGCAGGAGCGAATCGGGTGA	0.562													10	23					0	0	1	0	0
RPH3A	22895	broad.mit.edu	37	12	113303252	113303252	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113303252G>A	uc010syl.1	+	6	626	c.264G>A	c.(262-264)AAG>AAA	p.K88K	RPH3A_uc001ttz.2_Silent_p.K88K|RPH3A_uc001tty.2_Silent_p.K84K|RPH3A_uc009zwe.1_Silent_p.K84K|RPH3A_uc010sym.1_Silent_p.K39K|RPH3A_uc001tua.2_5'Flank	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	88	RabBD.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		ACATGAGGAAGAACGTGGCTG	0.537													7	107					0	0	1	0	0
OAS1	4938	broad.mit.edu	37	12	113346348	113346348	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113346348C>T	uc001tud.2	+	2	294	c.188C>T	c.(187-189)TCC>TTC	p.S63F	OAS1_uc010syn.1_Missense_Mutation_p.S62F|OAS1_uc010syo.1_Missense_Mutation_p.S62F|OAS1_uc001tub.2_Missense_Mutation_p.S63F|OAS1_uc001tuc.2_Missense_Mutation_p.S63F|OAS1_uc009zwf.2_Missense_Mutation_p.S62F	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	63					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						CAGGGTGGCTCCTCAGGCAAG	0.438													20	42					0	0	1	0	0
OAS1	4938	broad.mit.edu	37	12	113346511	113346511	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113346511G>A	uc001tud.2	+	2	457	c.351G>A	c.(349-351)GTG>GTA	p.V117V	OAS1_uc010syn.1_Silent_p.V116V|OAS1_uc010syo.1_Silent_p.V116V|OAS1_uc001tub.2_Silent_p.V117V|OAS1_uc001tuc.2_Silent_p.V117V|OAS1_uc009zwf.2_Silent_p.V116V	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	117	Necessary for binding to dsRNA.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						CATTTTCCGTGAAGTTTGAGG	0.562													14	53					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113388681	113388681	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113388681C>T	uc001tug.2	+	7	1645	c.1558C>T	c.(1558-1560)CCT>TCT	p.P520S		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	520	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						CCTTCAGTTTCCTGAGCAGAA	0.617													18	52					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113388725	113388725	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113388725C>T	uc001tug.2	+	7	1689	c.1602C>T	c.(1600-1602)TCC>TCT	p.S534S		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	534	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						AGCTGGTGTCCACAGCCCTGA	0.612													21	40					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113388767	113388767	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113388767C>T	uc001tug.2	+	7	1731	c.1644C>T	c.(1642-1644)GCC>GCT	p.A548A		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	548	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						TGCTGCCTGCCTTCGATGCTG	0.597													6	45					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113403696	113403696	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113403696C>T	uc001tug.2	+	12	2638	c.2551C>T	c.(2551-2553)CAA>TAA	p.Q851*		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	851	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						GGAGGCATGTCAACAGGAGCG	0.582													6	20					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113405329	113405329	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113405329G>A	uc001tug.2	+	13	2883	c.2796G>A	c.(2794-2796)CGG>CGA	p.R932R		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	932	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						AGCTACAACGGGACTTCATCA	0.572													8	21					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113442792	113442792	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113442792C>T	uc001tuj.2	+	7	1373	c.1233C>T	c.(1231-1233)CTC>CTT	p.L411L	OAS2_uc001tui.1_Silent_p.L411L	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	411	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						ATGCCGATCTCGTCGTGTTCC	0.478													19	52					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113447007	113447007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113447007G>A	uc001tuj.2	+	10	2151	c.2011G>A	c.(2011-2013)GAT>AAT	p.D671N	OAS2_uc001tui.1_Missense_Mutation_p.D671N	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	671	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						CTGCTTCAAGGATGGGACTGG	0.512													69	208					0	0	1	0	0
DTX1	1840	broad.mit.edu	37	12	113532957	113532957	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113532957C>T	uc001tuk.1	+	7	1833	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	499					negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						TGCCCGGCTTCCCTGATACCC	0.652													21	82					0	0	1	0	0
DTX1	1840	broad.mit.edu	37	12	113532972	113532972	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113532972C>T	uc001tuk.1	+	7	1848	c.1512C>T	c.(1510-1512)ACC>ACT	p.T504T		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	504					negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						ATACCCAGACCATCCGCATCG	0.642													7	102					0	0	1	0	0
RASAL1	8437	broad.mit.edu	37	12	113544905	113544905	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113544905C>T	uc001tum.1	-	16	1947	c.1654G>A	c.(1654-1656)GAA>AAA	p.E552K	RASAL1_uc010syp.1_Missense_Mutation_p.E552K|RASAL1_uc001tul.2_Missense_Mutation_p.E552K|RASAL1_uc001tun.1_Missense_Mutation_p.E553K|RASAL1_uc010syq.1_Missense_Mutation_p.E552K|RASAL1_uc001tuo.3_Missense_Mutation_p.E552K|RASAL1_uc010syr.1_3'UTR	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	552				E -> EE (in Ref. 4; CAB66607).	intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						AACTCACCTTCATCCCCATCC	0.597													23	54					0	0	1	0	0
RASAL1	8437	broad.mit.edu	37	12	113565931	113565931	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113565931C>T	uc001tum.1	-	4	468	c.175G>A	c.(175-177)GTG>ATG	p.V59M	RASAL1_uc010syp.1_Missense_Mutation_p.V59M|RASAL1_uc001tul.2_Missense_Mutation_p.V59M|RASAL1_uc001tun.1_Missense_Mutation_p.V59M|RASAL1_uc010syq.1_Missense_Mutation_p.V59M|RASAL1_uc001tuo.3_Missense_Mutation_p.V59M|RASAL1_uc010syr.1_Missense_Mutation_p.V59M	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	59	C2 1.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						GGCAGGTGCACCGTGTACTCC	0.617													90	228					0	0	1	0	0
DDX54	79039	broad.mit.edu	37	12	113603608	113603608	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113603608G>A	uc001tup.2	-	13	1672	c.1644C>T	c.(1642-1644)TTC>TTT	p.F548F	DDX54_uc001tuq.3_Silent_p.F548F	NM_024072	NP_076977	Q8TDD1	DDX54_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	548					estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nucleolus	ATP binding|ATP-dependent RNA helicase activity|estrogen receptor binding|RNA binding|transcription corepressor activity			skin(2)|central_nervous_system(1)	3						AGGACTCACTGAAGAGGGGGT	0.642													10	29					0	0	1	0	0
DDX54	79039	broad.mit.edu	37	12	113612944	113612944	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113612944G>A	uc001tup.2	-	8	799	c.771C>T	c.(769-771)TTC>TTT	p.F257F	DDX54_uc001tuq.3_Silent_p.F257F	NM_024072	NP_076977	Q8TDD1	DDX54_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	257	Helicase ATP-binding.				estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nucleolus	ATP binding|ATP-dependent RNA helicase activity|estrogen receptor binding|RNA binding|transcription corepressor activity			skin(2)|central_nervous_system(1)	3						GCTGCTCTGCGAAACCCATTT	0.612											OREG0022139	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	64					0	0	1	0	0
TPCN1	53373	broad.mit.edu	37	12	113704138	113704138	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113704138C>T	uc001tuw.2	+	4	688	c.391C>T	c.(391-393)CCC>TCC	p.P131S	TPCN1_uc001tux.2_Missense_Mutation_p.P203S|TPCN1_uc010syt.1_Missense_Mutation_p.P63S	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	131	Helical; Name=S1 of repeat I; (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						CCCCGCCGTCCCCGCACTCCG	0.632													127	255					0	0	1	0	0
SLC24A6	80024	broad.mit.edu	37	12	113754419	113754419	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113754419G>A	uc001tvc.2	-	10	1115	c.905C>T	c.(904-906)GCT>GTT	p.A302V	SLC24A6_uc001tuz.2_Missense_Mutation_p.A7V|SLC24A6_uc001tva.2_RNA|SLC24A6_uc001tvb.2_Missense_Mutation_p.A40V	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	302	Cytoplasmic (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						CAGGATCTGAGCCGTGGTCTC	0.577													32	273					0	0	1	0	0
SLC24A6	80024	broad.mit.edu	37	12	113759020	113759020	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113759020G>A	uc001tvc.2	-	3	500	c.290C>T	c.(289-291)CCT>CTT	p.P97L	SLC24A6_uc001tvd.1_Missense_Mutation_p.P97L|SLC24A6_uc001tuz.2_5'Flank|SLC24A6_uc001tva.2_5'Flank|SLC24A6_uc001tvb.2_5'Flank	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	97	Helical; Name=1; (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						GACAGCCAGAGGGAGGAGGCT	0.642													18	114					0	0	1	0	0
PLBD2	196463	broad.mit.edu	37	12	113825664	113825664	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113825664C>T	uc001tve.2	+	11	1590	c.1555C>T	c.(1555-1557)CCC>TCC	p.P519S	PLBD2_uc001tvf.2_Missense_Mutation_p.P487S	NM_173542	NP_775813	Q8NHP8	PLBL2_HUMAN	phospholipase B domain containing 2 isoform 1	519					lipid catabolic process	lysosomal lumen	hydrolase activity				0						TGGCTCCTACCCCTTCCAGGC	0.637													60	219					0	0	1	0	0
SDSL	113675	broad.mit.edu	37	12	113875773	113875773	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113875773C>T	uc001tvi.2	+	9	1089	c.879C>T	c.(877-879)GCC>GCT	p.A293A	SDSL_uc009zwh.2_Silent_p.A293A	NM_138432	NP_612441	Q96GA7	SDSL_HUMAN	serine dehydratase-like	293					cellular amino acid metabolic process		L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	GGCTCCAGGCCGAGGGCTGCC	0.607													70	253					0	0	1	0	0
LHX5	64211	broad.mit.edu	37	12	113907014	113907014	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:113907014C>T	uc001tvj.1	-	2	884	c.310G>A	c.(310-312)GAG>AAG	p.E104K		NM_022363	NP_071758	Q9H2C1	LHX5_HUMAN	LIM homeobox protein 5	104	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACGTAGAGCTCCTCGCCGGTG	0.572													21	48					0	0	1	0	0
RBM19	9904	broad.mit.edu	37	12	114261086	114261086	+	Silent	SNP	G	A	A	rs140794490		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:114261086G>A	uc009zwi.2	-	24	2970	c.2826C>T	c.(2824-2826)ATC>ATT	p.I942I	RBM19_uc001tvn.3_Silent_p.I942I|RBM19_uc001tvm.2_Silent_p.I942I	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	942					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GCTGCTCCAGGATCTCGTCCA	0.622													8	55					0	0	1	0	0
RBM19	9904	broad.mit.edu	37	12	114282476	114282476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:114282476G>A	uc009zwi.2	-	23	2926	c.2782C>T	c.(2782-2784)CAC>TAC	p.H928Y	RBM19_uc001tvn.3_Missense_Mutation_p.H928Y|RBM19_uc001tvm.2_Missense_Mutation_p.H928Y	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	928					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					CTCCTACCGTGAAAGTGAGCG	0.657													4	11					0	0	1	0	0
RBM19	9904	broad.mit.edu	37	12	114386804	114386804	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:114386804G>A	uc009zwi.2	-	10	1254	c.1110C>T	c.(1108-1110)GTC>GTT	p.V370V	RBM19_uc001tvn.3_Silent_p.V370V|RBM19_uc001tvm.2_Silent_p.V370V	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	370					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					TGGTGGTGGGGACGTTCTTTT	0.587													21	168					0	0	1	0	0
TBX5	6910	broad.mit.edu	37	12	114841688	114841688	+	Missense_Mutation	SNP	C	T	T	rs145365553		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:114841688C>T	uc001tvo.2	-	2	511	c.16G>A	c.(16-18)GAG>AAG	p.E6K	TBX5_uc001tvp.2_Missense_Mutation_p.E6K|TBX5_uc001tvq.2_Intron|TBX5_uc010syv.1_Missense_Mutation_p.E6K	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	6					cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		CCAAAGCCCTCGTCTGCGTCG	0.677													9	37					0	0	1	0	0
TBX3	6926	broad.mit.edu	37	12	115109849	115109849	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:115109849G>A	uc001tvt.1	-	8	2993	c.2029C>T	c.(2029-2031)CTG>TTG	p.L677L	TBX3_uc001tvu.1_Silent_p.L657L	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	677	Transcription repression.				anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		CTGGCGGCCAGGGCGGCGACT	0.716													4	5					0	0	1	0	0
MED13L	23389	broad.mit.edu	37	12	116429355	116429355	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:116429355G>A	uc001tvw.2	-	17	3459	c.3404C>T	c.(3403-3405)GCC>GTC	p.A1135V		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1135					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		CATGTTGCAGGCACAGATGCA	0.483													37	60					0	0	1	0	0
MED13L	23389	broad.mit.edu	37	12	116429583	116429583	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:116429583G>A	uc001tvw.2	-	17	3231	c.3176C>T	c.(3175-3177)ACT>ATT	p.T1059I		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1059					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		ACCTCTGGGAGTTCTTGGGGT	0.612													24	75					0	0	1	0	0
RNFT2	84900	broad.mit.edu	37	12	117191865	117191865	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117191865G>A	uc009zwn.2	+	5	860	c.627G>A	c.(625-627)AAG>AAA	p.K209K	RNFT2_uc001twb.3_Silent_p.K209K|RNFT2_uc001twa.3_Silent_p.K119K	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	209	Cytoplasmic (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		TCTCACTGAAGGTGAGTCACT	0.463													21	52					0	0	1	0	0
RNFT2	84900	broad.mit.edu	37	12	117271695	117271695	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117271695C>T	uc009zwn.2	+	8	1214	c.981C>T	c.(979-981)TCC>TCT	p.S327S	RNFT2_uc001twb.3_Silent_p.S327S|RNFT2_uc001twa.3_Silent_p.S237S|RNFT2_uc001twc.3_Silent_p.S75S	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	327	Cytoplasmic (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		ACGACTCCTCCAACAGCTACT	0.582													8	24					0	0	1	0	0
TESC	54997	broad.mit.edu	37	12	117486949	117486949	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117486949C>T	uc001twh.2	-	4	388	c.383G>A	c.(382-384)GGA>GAA	p.G128E	TESC_uc001twi.2_RNA	NM_017899	NP_060369	Q96BS2	TESC_HUMAN	tescalcin	75					negative regulation of cell proliferation|positive regulation of megakaryocyte differentiation|positive regulation of transcription, DNA-dependent|regulation of cell adhesion mediated by integrin	cytoplasm|lamellipodium|nucleus|plasma membrane|ruffle	calcium ion binding|magnesium ion binding|phosphatase inhibitor activity|protein binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0297)		GCCACTGGGTCCCTTGCGCAG	0.537													17	71					0	0	1	0	0
TESC	54997	broad.mit.edu	37	12	117494630	117494630	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117494630G>A	uc001twh.2	-	3	354	c.349C>T	c.(349-351)CGT>TGT	p.R117C	TESC_uc001twi.2_RNA	NM_017899	NP_060369	Q96BS2	TESC_HUMAN	tescalcin	64					negative regulation of cell proliferation|positive regulation of megakaryocyte differentiation|positive regulation of transcription, DNA-dependent|regulation of cell adhesion mediated by integrin	cytoplasm|lamellipodium|nucleus|plasma membrane|ruffle	calcium ion binding|magnesium ion binding|phosphatase inhibitor activity|protein binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0297)		AAGAAGGCACGAACAATTTTG	0.507													57	32					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117655926	117655926	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117655926C>T	uc001twm.1	-	28	4900	c.4214G>A	c.(4213-4215)CGA>CAA	p.R1405Q		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1405					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTCGTACGTTCGCAGGGTGAC	0.478													78	292					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117662894	117662894	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117662894G>A	uc001twm.1	-	25	4439	c.3753C>T	c.(3751-3753)CTC>CTT	p.L1251L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1251	NADP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CTGGTCCAACGAGGATGCAGG	0.572													49	121					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117665278	117665278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117665278C>T	uc001twm.1	-	23	4260	c.3574G>A	c.(3574-3576)GAA>AAA	p.E1192K		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1192	FAD-binding FR-type.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	AGGTGCACTTCATCAGGGTAC	0.622													17	37					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117665424	117665424	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117665424C>T	uc001twm.1	-	23	4114	c.3428G>A	c.(3427-3429)TGG>TAG	p.W1143*		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1143	FAD-binding FR-type.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GCCCCATTTCCATTCCTCGTA	0.592													17	58					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117669776	117669776	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117669776G>A	uc001twm.1	-	22	4082	c.3396C>T	c.(3394-3396)GTC>GTT	p.V1132V		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1132	FAD-binding FR-type.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CCTTGCTGAGGACCAGCAGAC	0.378													10	17					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117681165	117681165	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117681165G>A	uc001twm.1	-	19	3585	c.2899C>T	c.(2899-2901)CGC>TGC	p.R967C		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	967					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTCCAGCTGCGATCATTGCTG	0.512													24	72					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117685228	117685228	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117685228G>A	uc001twm.1	-	18	3434	c.2748C>T	c.(2746-2748)ATC>ATT	p.I916I		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	916	FMN (By similarity).|Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TCATCTTCAGGATCCTCTCCC	0.557													40	85					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117691445	117691445	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117691445C>T	uc001twm.1	-	17	3332	c.2646G>A	c.(2644-2646)GTG>GTA	p.V882V	NOS1_uc001twn.1_Silent_p.V86V	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	882	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTGCTCACCTCACATTGGCCA	0.557													23	78					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117691541	117691541	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117691541G>A	uc001twm.1	-	17	3236	c.2550C>T	c.(2548-2550)TTC>TTT	p.F850F	NOS1_uc001twn.1_Silent_p.F54F	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	850	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	AGACGCTGTTGAATCGGACCT	0.542													10	69					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117696924	117696924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117696924C>T	uc001twm.1	-	15	3065	c.2379G>A	c.(2377-2379)ATG>ATA	p.M793I	NOS1_uc001twn.1_5'Flank	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	793	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CATATTCTTCCATGGACATCA	0.348													12	41					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117710337	117710337	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117710337C>T	uc001twm.1	-	10	2378	c.1692G>A	c.(1690-1692)CTG>CTA	p.L564L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	564					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CGTACCACTTCAGCCCCAGGT	0.607													15	64					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117768165	117768165	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117768165C>T	uc001twm.1	-	2	1396	c.710G>A	c.(709-711)GGA>GAA	p.G237E		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	237	PIN (nNOS-inhibiting protein) binding.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CACCTGGATTCCCATATCTTT	0.418													23	81					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117768403	117768403	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117768403C>T	uc001twm.1	-	2	1158	c.472G>A	c.(472-474)GGG>AGG	p.G158R		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	158	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TGCTGAGGCCCATTCCCGGGA	0.701													20	93					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117768532	117768532	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117768532C>T	uc001twm.1	-	2	1029	c.343G>A	c.(343-345)GGG>AGG	p.G115R		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	115	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTGGGGGTCCCATCACCTGTA	0.632													22	38					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117768756	117768756	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117768756G>A	uc001twm.1	-	2	805	c.119C>T	c.(118-120)CCC>CTC	p.P40L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	40	Interaction with NOSIP (By similarity).|PDZ.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GATGATCACGGGCGGCTTACT	0.587													15	78					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117768856	117768856	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117768856C>T	uc001twm.1	-	2	705	c.19G>A	c.(19-21)GGT>AGT	p.G7S		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	7	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TGCTGAACACCGAACATGTGA	0.527													10	105					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117968808	117968808	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117968808C>T	uc001two.2	-	12	1708	c.1653G>A	c.(1651-1653)CCG>CCA	p.P551P		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	580					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCTCCGGCACCGGCACCACAT	0.552													48	119					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117977565	117977565	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117977565G>A	uc001two.2	-	10	1614	c.1559C>T	c.(1558-1560)TCC>TTC	p.S520F		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	549	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCACTGTGGGGAAGGGTGTAG	0.642													7	34					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117993041	117993041	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117993041C>T	uc001two.2	-	9	1419	c.1364G>A	c.(1363-1365)CGG>CAG	p.R455Q		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	484					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGGTGGCTTCCGTAGAGGGTT	0.502													14	22					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117993048	117993048	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117993048G>A	uc001two.2	-	9	1412	c.1357C>T	c.(1357-1359)CCT>TCT	p.P453S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	482					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTCCGTAGAGGGTTGTTGATG	0.493													11	21					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117996324	117996324	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:117996324G>A	uc001two.2	-	8	1348	c.1293C>T	c.(1291-1293)ATC>ATT	p.I431I		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	460					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTCGGTGGATGATCAGAAGAT	0.453													9	61					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	118020103	118020103	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:118020103G>A	uc001two.2	-	6	1201	c.1146C>T	c.(1144-1146)ATC>ATT	p.I382I		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	411					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACCTGTGCTTGATGGAGTTGC	0.592													12	68					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	118105316	118105316	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:118105316G>A	uc001two.2	-	5	1102	c.1047C>T	c.(1045-1047)TCC>TCT	p.S349S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	378					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CAGGAGGGGTGGAAGGCAGGA	0.627													3	14					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	118199156	118199156	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:118199156G>A	uc001two.2	-	4	614	c.559C>T	c.(559-561)CCC>TCC	p.P187S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	216	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGGGCCCCGGGAGTGGGGCTG	0.706													12	22					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	118293378	118293378	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:118293378G>A	uc001two.2	-	3	295	c.240C>T	c.(238-240)ATC>ATT	p.I80I		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	109					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGCCGGGGGAGATTTCCTAGA	0.602													9	30					0	0	1	0	0
VSIG10	54621	broad.mit.edu	37	12	118511610	118511610	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:118511610G>A	uc001tws.2	-	5	1447	c.1113C>T	c.(1111-1113)ACC>ACT	p.T371T		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	371	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane					0						GGATAGTGAGGGTGGAGTTCT	0.587													7	43					0	0	1	0	0
VSIG10	54621	broad.mit.edu	37	12	118520021	118520021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:118520021G>A	uc001tws.2	-	3	909	c.575C>T	c.(574-576)TCG>TTG	p.S192L		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	192	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane					0						GAGGTTTGGCGATATCAGTAA	0.517													20	76					0	0	1	0	0
SRRM4	84530	broad.mit.edu	37	12	119540121	119540121	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119540121C>T	uc001txa.1	+	2	504	c.212C>T	c.(211-213)CCC>CTC	p.P71L		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	71					cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						GCCACCGAGCCCTTGGGCACC	0.542													9	32					0	0	1	0	0
SRRM4	84530	broad.mit.edu	37	12	119583407	119583407	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119583407G>A	uc001txa.1	+	9	1285	c.993G>A	c.(991-993)GGG>GGA	p.G331G		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	331	Ser-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						CTGATTCAGGGAACTCCTTCA	0.612													4	20					0	0	1	0	0
HSPB8	26353	broad.mit.edu	37	12	119631578	119631578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119631578C>T	uc001txb.2	+	3	1029	c.506C>T	c.(505-507)CCC>CTC	p.P169L	HSPB8_uc001txc.2_3'UTR	NM_014365	NP_055180	Q9UJY1	HSPB8_HUMAN	heat shock 22kDa protein 8	169					cell death|response to heat	cytoplasm|nucleus	identical protein binding|protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ATCGAAGCTCCCCAGGTCCCT	0.517													36	81					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119926576	119926576	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119926576C>T	uc001txe.2	+	5	927	c.462C>T	c.(460-462)TTC>TTT	p.F154F	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	154										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		AGCCCCTCTTCCGCCAGCTCT	0.512													23	55					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119926647	119926647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119926647C>T	uc001txe.2	+	5	998	c.533C>T	c.(532-534)CCT>CTT	p.P178L	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	178										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		ACCATGAAGCCTGTGATCACC	0.547													26	60					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119942902	119942902	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119942902G>A	uc001txe.2	+	7	1142	c.677G>A	c.(676-678)CGA>CAA	p.R226Q	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	226										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CCCACAATGCGAGTCACCAAC	0.418													30	116					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119942978	119942978	+	Silent	SNP	G	A	A	rs141348508	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119942978G>A	uc001txe.2	+	7	1218	c.753G>A	c.(751-753)CAG>CAA	p.Q251Q	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	251										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CCTCTCCCCAGAGCAGCATGA	0.557													69	147					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119943026	119943026	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119943026G>A	uc001txe.2	+	7	1266	c.801G>A	c.(799-801)GTG>GTA	p.V267V	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	267										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CCCCAAGTGTGAACACCCAGG	0.552													56	199					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119954500	119954500	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119954500G>A	uc001txe.2	+	8	1421	c.956G>A	c.(955-957)AGA>AAA	p.R319K	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	319										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GGGATGCAAAGAAAAGCACCC	0.383													12	40					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119961497	119961497	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119961497G>A	uc001txe.2	+	11	1569	c.1104_splice	c.e11-1	p.N368_splice	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60											ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		TGTGTCCACAGCCGCACTAAT	0.567													5	50					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119966478	119966478	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:119966478C>T	uc001txe.2	+	12	1753	c.1288C>T	c.(1288-1290)CAA>TAA	p.Q430*	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	430										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CTCAAATTTTCAAAAGGACAT	0.398													52	112					0	0	1	0	0
CIT	11113	broad.mit.edu	37	12	120135468	120135468	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120135468G>A	uc001txi.1	-	45	5805	c.5752C>T	c.(5752-5754)CGC>TGC	p.R1918C	CIT_uc001txh.1_Missense_Mutation_p.R1437C|CIT_uc001txj.1_Missense_Mutation_p.R1960C	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1918					intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GGTTACCTGCGGGAGGTGGAC	0.527													32	132					0	0	1	0	0
CIT	11113	broad.mit.edu	37	12	120138561	120138561	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120138561G>A	uc001txi.1	-	43	5539	c.5486C>T	c.(5485-5487)CCT>CTT	p.P1829L	CIT_uc001txh.1_Missense_Mutation_p.P1348L|CIT_uc001txj.1_Missense_Mutation_p.P1871L	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1829	CNH.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		AAAGGCCAAAGGTAAGCGACT	0.458													10	88					0	0	1	0	0
CIT	11113	broad.mit.edu	37	12	120148155	120148155	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120148155G>A	uc001txi.1	-	38	4899	c.4846C>T	c.(4846-4848)CTG>TTG	p.L1616L	CIT_uc001txh.1_Silent_p.L1135L|CIT_uc001txj.1_Silent_p.L1658L	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1616	CNH.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		AAGACATTCAGGGCGTAGAGC	0.498													44	66					0	0	1	0	0
CIT	11113	broad.mit.edu	37	12	120150415	120150415	+	Silent	SNP	G	A	A	rs147828404		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120150415G>A	uc001txi.1	-	35	4592	c.4539C>T	c.(4537-4539)CTC>CTT	p.L1513L	CIT_uc001txh.1_Silent_p.L1032L|CIT_uc001txj.1_Silent_p.L1555L	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1513	PH.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CTGTATTTGCGAGTTCGGAAG	0.592													13	73					0	0	1	0	0
CIT	11113	broad.mit.edu	37	12	120172084	120172084	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120172084G>A	uc001txi.1	-	25	3162	c.3109C>T	c.(3109-3111)CTA>TTA	p.L1037L	CIT_uc001txh.1_Silent_p.L571L|CIT_uc001txj.1_Silent_p.L1079L	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1037	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		TCTTTTTCTAGCAGCTCATCG	0.542													23	74					0	0	1	0	0
CIT	11113	broad.mit.edu	37	12	120241121	120241121	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120241121G>A	uc001txi.1	-	10	1237	c.1184C>T	c.(1183-1185)TCG>TTG	p.S395L	CIT_uc001txh.1_5'UTR|CIT_uc001txj.1_Missense_Mutation_p.S395L	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	395	AGC-kinase C-terminal.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		TGAAACCCACGAATTCTTCTC	0.522													42	98					0	0	1	0	0
CIT	11113	broad.mit.edu	37	12	120263021	120263021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120263021G>A	uc001txi.1	-	8	958	c.905C>T	c.(904-906)CCC>CTC	p.P302L	CIT_uc001txj.1_Missense_Mutation_p.P302L	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	302	Protein kinase.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CTCTGCGAAGGGGGATCTCCC	0.468													35	73					0	0	1	0	0
CCDC64	92558	broad.mit.edu	37	12	120502576	120502576	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120502576C>T	uc001txl.1	+	4	827	c.802C>T	c.(802-804)CGT>TGT	p.R268C	CCDC64_uc001txk.2_Missense_Mutation_p.R268C|CCDC64_uc009zwv.1_RNA|CCDC64_uc010sze.1_Missense_Mutation_p.R12C	NM_207311	NP_997194	Q6ZP65	BICR1_HUMAN	coiled-coil domain containing 64	268	Potential.				Golgi to secretory granule transport|neuron projection development	centrosome	dynactin binding|Rab GTPase binding			ovary(2)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCTGGAGCATCGTCTCAGCGC	0.567													19	138					0	0	1	0	0
CCDC64	92558	broad.mit.edu	37	12	120510351	120510351	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120510351C>T	uc001txl.1	+	6	1151	c.1126C>T	c.(1126-1128)CGC>TGC	p.R376C	CCDC64_uc001txk.2_Missense_Mutation_p.R376C|CCDC64_uc009zwv.1_Intron|CCDC64_uc010sze.1_Intron|CCDC64_uc010szf.1_Missense_Mutation_p.R25C	NM_207311	NP_997194	Q6ZP65	BICR1_HUMAN	coiled-coil domain containing 64	376	Potential.				Golgi to secretory granule transport|neuron projection development	centrosome	dynactin binding|Rab GTPase binding			ovary(2)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGCCAGGTTCGCTATCTGTG	0.522													16	99					0	0	1	0	0
CCDC64	92558	broad.mit.edu	37	12	120530855	120530855	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120530855G>A	uc001txl.1	+	9	1637	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K	CCDC64_uc009zwv.1_RNA|CCDC64_uc010sze.1_Missense_Mutation_p.E209K|CCDC64_uc010szf.1_Missense_Mutation_p.E235K	NM_207311	NP_997194	Q6ZP65	BICR1_HUMAN	coiled-coil domain containing 64	538					Golgi to secretory granule transport|neuron projection development	centrosome	dynactin binding|Rab GTPase binding			ovary(2)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCACCTGAAAGAACGGAGCCA	0.622													18	66					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120568516	120568516	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120568516G>A	uc001txo.2	-	56	7618	c.7605C>T	c.(7603-7605)CTC>CTT	p.L2535L		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2535					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGTGTCTCATGAGAAAGCCCA	0.607													6	66					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120572392	120572392	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120572392G>A	uc001txo.2	-	52	7160	c.7147C>T	c.(7147-7149)CCC>TCC	p.P2383S		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2383					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GTGAAGAGGGGGTCCACCTTA	0.627													27	49					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120582833	120582833	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120582833G>A	uc001txo.2	-	40	5062	c.5049C>T	c.(5047-5049)GCC>GCT	p.A1683A		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1683	HEAT 12.			A -> V (in Ref. 7; AAC51648).	regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCTTCACCATGGCCCCAAGGG	0.577													27	77					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120584894	120584894	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120584894G>A	uc001txo.2	-	38	4922	c.4909C>T	c.(4909-4911)CAG>TAG	p.Q1637*		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1637	HEAT 11.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCAATAATCTGGGCTGCCATC	0.552													4	30					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120598020	120598020	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120598020G>A	uc001txo.2	-	23	2489	c.2476C>T	c.(2476-2478)CTG>TTG	p.L826L		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	826					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTGCTGGTCAGCTGCACCTCC	0.582													25	81					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120601056	120601056	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120601056G>A	uc001txo.2	-	19	1869	c.1856C>T	c.(1855-1857)CCC>CTC	p.P619L		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	619					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGCCTCTAAGGGCAGCACCTG	0.572													14	33					0	0	1	0	0
MSI1	4440	broad.mit.edu	37	12	120785268	120785268	+	Silent	SNP	C	T	T	rs141481855	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120785268C>T	uc001tye.1	-	12	904	c.840G>A	c.(838-840)GCG>GCA	p.A280A		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	280	Poly-Ala.				nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GAACCACAGCCGCTGCCGCCG	0.627													35	173					0	0	1	0	0
RNF10	9921	broad.mit.edu	37	12	120992561	120992561	+	Missense_Mutation	SNP	C	T	T	rs138704590		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:120992561C>T	uc001typ.3	+	4	1078	c.595C>T	c.(595-597)CAT>TAT	p.H199Y	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Missense_Mutation_p.H105Y	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	199					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTACACAGCTCATTTTGCTGA	0.428													40	149					0	0	1	0	0
RNF10	9921	broad.mit.edu	37	12	121002954	121002954	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:121002954C>T	uc001typ.3	+	11	2228	c.1745C>T	c.(1744-1746)CCT>CTT	p.P582L	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Missense_Mutation_p.P493L	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	582					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCTTTGCAACCTCCTGTGGTC	0.478													16	128					0	0	1	0	0
HNF1A	6927	broad.mit.edu	37	12	121434128	121434128	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:121434128C>T	uc001tzg.2	+	5	1042	c.1019C>T	c.(1018-1020)CCC>CTC	p.P340L	HNF1A_uc001tze.1_Missense_Mutation_p.P340L|HNF1A_uc001tzf.2_Missense_Mutation_p.P340L|HNF1A_uc010szn.1_Missense_Mutation_p.P340L	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	340					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AGCGGCGGTCCCTTAGTGACA	0.617									Hepatic_Adenoma_Familial_Clustering_of				43	114					0	0	1	0	0
OASL	8638	broad.mit.edu	37	12	121458439	121458439	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:121458439C>T	uc001tzj.1	-	6	1476	c.1470G>A	c.(1468-1470)GGG>GGA	p.G490G	OASL_uc001tzk.1_3'UTR	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	490	Ubiquitin-like 2.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TGCCATAGATCCCCAGACCCA	0.517													22	51					0	0	1	0	0
OASL	8638	broad.mit.edu	37	12	121469298	121469298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:121469298G>A	uc001tzj.1	-	3	610	c.604C>T	c.(604-606)CGG>TGG	p.R202W	OASL_uc001tzk.1_Missense_Mutation_p.R202W	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	202					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TTAGTTGGCCGATGTTTCACG	0.587													30	76					0	0	1	0	0
P2RX7	5027	broad.mit.edu	37	12	121593886	121593887	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:121593886_121593887AC>TT	uc001tzm.2	+	3	395_396	c.299_300AC>TT	c.(298-300)AAC>ATT	p.N100I	P2RX7_uc001tzn.2_Missense_Mutation_p.N10I|P2RX7_uc001tzo.2_RNA|P2RX7_uc001tzp.2_5'UTR|P2RX7_uc001tzq.2_5'UTR	NM_002562	NP_002553	Q99572	P2RX7_HUMAN	purinergic receptor P2X7	100						integral to membrane	ATP binding|ion channel activity|receptor activity			large_intestine(2)|lung(1)|breast(1)|skin(1)	5	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCACAGGGGAACTCTTTCTTCG	0.47													39	95					0	0	1	0	0
CAMKK2	10645	broad.mit.edu	37	12	121683011	121683011	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:121683011G>A	uc001tzu.2	-	15	1609	c.1485C>T	c.(1483-1485)TCC>TCT	p.S495S	CAMKK2_uc001tzt.2_Silent_p.S495S|CAMKK2_uc001tzv.2_Silent_p.S495S|CAMKK2_uc001tzw.2_Silent_p.S452S|CAMKK2_uc001tzx.2_Silent_p.S495S|CAMKK2_uc001tzy.2_Silent_p.S452S|CAMKK2_uc001tzz.1_Silent_p.S282S|CAMKK2_uc001uaa.1_Silent_p.S495S|CAMKK2_uc001uab.2_Silent_p.S495S|CAMKK2_uc001uac.2_Silent_p.S452S	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	495	Calmodulin-binding (By similarity).				calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GGTTCCCAAAGGAGCGTTTAC	0.592													4	5					0	0	1	0	0
KDM2B	84678	broad.mit.edu	37	12	121880150	121880150	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:121880150G>A	uc001uat.2	-	19	3198	c.3094C>T	c.(3094-3096)CCG>TCG	p.P1032S	KDM2B_uc001uaq.2_Missense_Mutation_p.P472S|KDM2B_uc010szy.1_Missense_Mutation_p.P472S|KDM2B_uc001uar.2_Missense_Mutation_p.P623S|KDM2B_uc001uas.2_Missense_Mutation_p.P963S|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Missense_Mutation_p.P280S|KDM2B_uc010szx.1_Missense_Mutation_p.P280S|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1032	Pro-rich.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						CACTTGGGCGGGGACACGGAG	0.721													3	11					0	0	1	0	0
KDM2B	84678	broad.mit.edu	37	12	121932424	121932424	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:121932424G>A	uc001uat.2	-	12	1796	c.1692C>T	c.(1690-1692)ATC>ATT	p.I564I	KDM2B_uc001uar.2_Silent_p.I155I|KDM2B_uc001uas.2_Silent_p.I533I|KDM2B_uc001uau.2_Silent_p.I447I|KDM2B_uc001uav.3_Silent_p.I474I	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	564					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						GGACCCCAGTGATGGCCAGAC	0.587											OREG0022202	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	29					0	0	1	0	0
KDM2B	84678	broad.mit.edu	37	12	121947613	121947613	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:121947613G>A	uc001uat.2	-	11	1508	c.1404C>T	c.(1402-1404)TTC>TTT	p.F468F	KDM2B_uc001uar.2_Silent_p.F59F|KDM2B_uc001uas.2_Silent_p.F437F|KDM2B_uc001uau.2_Silent_p.F351F|KDM2B_uc001uav.3_Silent_p.F378F	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	468					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						TCCTTTTGAGGAATCGCAGGG	0.612													13	71					0	0	1	0	0
KDM2B	84678	broad.mit.edu	37	12	122018775	122018775	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122018775G>A	uc001uat.2	-	1	146	c.42C>T	c.(40-42)CCC>CCT	p.P14P	KDM2B_uc001uas.2_5'Flank|KDM2B_uc001uau.2_5'UTR|KDM2B_uc001uav.3_Silent_p.P14P	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	14					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						TTTTTCGTGGGGGGTGATCCT	0.483													38	135					0	0	1	0	0
TMEM120B	144404	broad.mit.edu	37	12	122209422	122209422	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122209422C>T	uc001ubc.3	+	8	790	c.646C>T	c.(646-648)CGC>TGC	p.R216C	TMEM120B_uc009zxh.2_Missense_Mutation_p.R216C	NM_001080825	NP_001074294	A0PK00	T120B_HUMAN	transmembrane protein 120B	216						integral to membrane					0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;5.75e-05)|Epithelial(86;0.000128)|BRCA - Breast invasive adenocarcinoma(302;0.238)		TCAGAAGTTTCGCAACCAGTT	0.488													29	88					0	0	1	0	0
RHOF	54509	broad.mit.edu	37	12	122218831	122218831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122218831C>T	uc001ubb.2	-	4	473	c.418G>A	c.(418-420)GAG>AAG	p.E140K	TMEM120B_uc001ubc.3_3'UTR|TMEM120B_uc009zxh.2_3'UTR|TMEM120B_uc001uba.1_Intron|RHOF_uc001ubd.3_Missense_Mutation_p.E140K	NM_019034	NP_061907	Q9HBH0	RHOF_HUMAN	ras homolog gene family, member F precursor	140					actin filament organization|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|plasma membrane	GTP binding|GTPase activity			ovary(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;4.38e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.223)		CGCAGCTGCTCCTTGTCCTTC	0.662													11	25					0	0	1	0	0
HPD	3242	broad.mit.edu	37	12	122281721	122281721	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122281721C>T	uc001ubj.2	-	12	889	c.849G>A	c.(847-849)GAG>GAA	p.E283E	HPD_uc001ubk.2_Silent_p.E244E	NM_002150	NP_002141	P32754	HPPD_HUMAN	4-hydroxyphenylpyruvate dioxygenase	283					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	4-hydroxyphenylpyruvate dioxygenase activity|metal ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000105)|Epithelial(86;0.000352)|BRCA - Breast invasive adenocarcinoma(302;0.225)	Nitisinone(DB00348)	CCAGGCCTCTCTCTCTCAAGT	0.532													23	39					0	0	1	0	0
HPD	3242	broad.mit.edu	37	12	122292683	122292683	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122292683C>T	uc001ubj.2	-	7	380	c.340G>A	c.(340-342)GGC>AGC	p.G114S	HPD_uc001ubk.2_Missense_Mutation_p.G75S	NM_002150	NP_002141	P32754	HPPD_HUMAN	4-hydroxyphenylpyruvate dioxygenase	114					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	4-hydroxyphenylpyruvate dioxygenase activity|metal ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000105)|Epithelial(86;0.000352)|BRCA - Breast invasive adenocarcinoma(302;0.225)	Nitisinone(DB00348)	ATTTTGGCGCCCCGTTCCCGT	0.602													15	112					0	0	1	0	0
PSMD9	5715	broad.mit.edu	37	12	122353804	122353804	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122353804C>T	uc001ubl.2	+	5	715	c.598C>T	c.(598-600)CAG>TAG	p.Q200*	WDR66_uc009zxk.2_5'Flank|PSMD9_uc009zxj.2_RNA|PSMD9_uc001ubm.2_Nonsense_Mutation_p.Q199*	NM_002813	NP_002804	O00233	PSMD9_HUMAN	proteasome 26S non-ATPase subunit 9	200					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of insulin secretion|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of insulin secretion|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|proteasome regulatory particle assembly|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	nucleus|proteasome regulatory particle	bHLH transcription factor binding|transcription coactivator activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000117)|Epithelial(86;0.000415)|BRCA - Breast invasive adenocarcinoma(302;0.231)		GGAAAAACACCAGCTTAGACT	0.383													4	27					0	0	1	0	0
BCL7A	605	broad.mit.edu	37	12	122481924	122481924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122481924C>T	uc001ubp.2	+	4	541	c.404C>T	c.(403-405)GCC>GTC	p.A135V	BCL7A_uc001ubo.2_Missense_Mutation_p.A135V	NM_001024808	NP_001019979	Q4VC05	BCL7A_HUMAN	B-cell CLL/lymphoma 7A isoform b	135					negative regulation of transcription, DNA-dependent					ovary(1)|lung(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000202)|Epithelial(86;0.000386)|BRCA - Breast invasive adenocarcinoma(302;0.231)		GTGGATGAGGCCCAGGCTGAT	0.652			T	MYC	BNHL								8	70					0	0	1	0	0
MLXIP	22877	broad.mit.edu	37	12	122618396	122618396	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122618396C>T	uc001ubq.2	+	9	1594	c.1594C>T	c.(1594-1596)CCC>TCC	p.P532S	MLXIP_uc001ubr.2_Missense_Mutation_p.P283S|MLXIP_uc001ubs.1_Missense_Mutation_p.P139S|MLXIP_uc001ubt.2_Missense_Mutation_p.P139S	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	532					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CACCCGGCCTCCCCAGCCACG	0.612													6	19					0	0	1	0	0
LRRC43	254050	broad.mit.edu	37	12	122677421	122677421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122677421G>A	uc009zxm.2	+	7	1244	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K	LRRC43_uc001ubw.3_Missense_Mutation_p.E222K|LRRC43_uc009zxn.2_Missense_Mutation_p.E168K	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	407	Glu-rich.										0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		GTCTGAGGTGGAGGAGTCAGG	0.547													20	42					0	0	1	0	0
DIABLO	56616	broad.mit.edu	37	12	122702927	122702927	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122702927G>A	uc010tab.1	-	4	1006	c.201C>T	c.(199-201)TCC>TCT	p.S67S	DIABLO_uc010taa.1_Silent_p.S14S|DIABLO_uc010tac.1_Intron|DIABLO_uc010tad.1_Intron|VPS33A_uc001ucc.2_RNA	NM_019887	NP_063940	Q9NR28	DBLOH_HUMAN	diablo isoform 1 precursor	67				Missing (in Ref. 2; BAB71568).	activation of caspase activity by cytochrome c|induction of apoptosis via death domain receptors	CD40 receptor complex|cytosol|internal side of plasma membrane|mitochondrial intermembrane space	protein binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000302)|Epithelial(86;0.00051)|BRCA - Breast invasive adenocarcinoma(302;0.223)		CACTACTAAGGGAATGAGGCT	0.398													13	82					0	0	1	0	0
ZCCHC8	55596	broad.mit.edu	37	12	122958467	122958467	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:122958467G>A	uc001ucn.2	-	14	1832	c.1701C>T	c.(1699-1701)GTC>GTT	p.V567V	ZCCHC8_uc001ucl.2_Silent_p.V178V|ZCCHC8_uc001ucm.2_Silent_p.V329V|ZCCHC8_uc009zxp.2_Silent_p.V329V|ZCCHC8_uc009zxq.2_Silent_p.V329V	NM_017612	NP_060082	Q6NZY4	ZCHC8_HUMAN	zinc finger, CCHC domain containing 8	567						catalytic step 2 spliceosome	nucleic acid binding|protein binding|zinc ion binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.25e-05)|Epithelial(86;0.000113)|BRCA - Breast invasive adenocarcinoma(302;0.202)		TTCCCTCCGGGACAGGGAGGT	0.507													97	265					0	0	1	0	0
GPR109A	338442	broad.mit.edu	37	12	123187023	123187024	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123187023_123187024GG>AA	uc001ucx.1	-	1	881_882	c.807_808CC>TT	c.(805-810)TACCGC>TATTGC	p.R270C	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	270	Extracellular (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	TCCACCGAGCGGTACACTTCAC	0.55													6	42					0	0	1	0	0
GPR109A	338442	broad.mit.edu	37	12	123187333	123187333	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123187333C>T	uc001ucx.1	-	1	572	c.498G>A	c.(496-498)AAG>AAA	p.K166K	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	166	Extracellular (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	GGATCGGCATCTTCTTCTTCA	0.537													23	66					0	0	1	0	0
GPR109A	338442	broad.mit.edu	37	12	123187479	123187479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123187479G>A	uc001ucx.1	-	1	426	c.352C>T	c.(352-354)CTC>TTC	p.L118F	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	118	Helical; Name=3; (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	ACCACCGTGAGGAAGATGATG	0.562													21	79					0	0	1	0	0
GPR109A	338442	broad.mit.edu	37	12	123187618	123187618	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123187618C>T	uc001ucx.1	-	1	287	c.213G>A	c.(211-213)GTG>GTA	p.V71V	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	71	Helical; Name=2; (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	GAAAGTCAGCCACTGCCAGGT	0.527													21	41					0	0	1	0	0
GPR109B	8843	broad.mit.edu	37	12	123200699	123200699	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123200699C>T	uc001ucy.3	-	1	741	c.586G>A	c.(586-588)GAG>AAG	p.E196K	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	196	Helical; Name=5; (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	AGGAAGAACTCCAGGAGGAAC	0.532													22	78					0	0	1	0	0
GPR109B	8843	broad.mit.edu	37	12	123200717	123200717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123200717C>T	uc001ucy.3	-	1	723	c.568G>A	c.(568-570)GAA>AAA	p.E190K	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	190	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	AACATAGCTTCGTGCCACCGG	0.537													22	74					0	0	1	0	0
GPR81	27198	broad.mit.edu	37	12	123214634	123214634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123214634C>T	uc001ucz.2	-	1	496	c.253G>A	c.(253-255)GAC>AAC	p.D85N	GPR81_uc001ucw.1_RNA	NM_032554	NP_115943	Q9BXC0	HCAR1_HUMAN	G protein-coupled receptor 81	85	Extracellular (Potential).				response to estradiol stimulus	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.14e-05)|Epithelial(86;3.25e-05)|BRCA - Breast invasive adenocarcinoma(302;0.197)		CAGGGAATGTCCCCAAAAGCC	0.527													14	28					0	0	1	0	0
GPR81	27198	broad.mit.edu	37	12	123214755	123214755	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123214755C>T	uc001ucz.2	-	1	375	c.132G>A	c.(130-132)ATG>ATA	p.M44I	GPR81_uc001ucw.1_RNA	NM_032554	NP_115943	Q9BXC0	HCAR1_HUMAN	G protein-coupled receptor 81	44	Cytoplasmic (Potential).				response to estradiol stimulus	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.14e-05)|Epithelial(86;3.25e-05)|BRCA - Breast invasive adenocarcinoma(302;0.197)		TCCAGGTCTTCATGTGGAAGC	0.547													9	27					0	0	1	0	0
CCDC62	84660	broad.mit.edu	37	12	123285917	123285917	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123285917C>T	uc001udc.2	+	9	1369	c.1224C>T	c.(1222-1224)AAC>AAT	p.N408N	CCDC62_uc010tah.1_RNA|CCDC62_uc001udf.2_Silent_p.N408N|CCDC62_uc001ude.2_Silent_p.N169N	NM_201435	NP_958843	Q6P9F0	CCD62_HUMAN	coiled-coil domain containing 62 isoform b	408						cytoplasm|nucleus				ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.51e-06)|Epithelial(86;2.65e-05)|BRCA - Breast invasive adenocarcinoma(302;0.206)		AGAAACACAACCTCCCTTGGT	0.413													9	40					0	0	1	0	0
ABCB9	23457	broad.mit.edu	37	12	123444423	123444423	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123444423G>A	uc001udm.3	-	2	670	c.360C>T	c.(358-360)TTC>TTT	p.F120F	ABCB9_uc009zxr.2_Silent_p.F120F|ABCB9_uc001udo.3_Silent_p.F120F|ABCB9_uc010taj.1_Silent_p.F120F|ABCB9_uc001udp.2_Silent_p.F120F|ABCB9_uc001udq.2_5'UTR|ABCB9_uc001udr.2_Silent_p.F120F	NM_019625	NP_062571	Q9NP78	ABCB9_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	120	Helical; (Potential).				positive regulation of T cell mediated cytotoxicity|protein transport	lysosomal membrane|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.84e-05)|Epithelial(86;0.000152)|BRCA - Breast invasive adenocarcinoma(302;0.111)		ACGTCCACACGAACAGGGCCC	0.657													10	21					0	0	1	0	0
PITPNM2	57605	broad.mit.edu	37	12	123481366	123481366	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123481366G>A	uc001uej.1	-	11	1703	c.1564C>T	c.(1564-1566)CCC>TCC	p.P522S	PITPNM2_uc001uek.1_Missense_Mutation_p.P522S	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	522					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		TGGTACTGGGGGGAGGAGGTG	0.617													24	75					0	0	1	0	0
PITPNM2	57605	broad.mit.edu	37	12	123481976	123481976	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123481976G>A	uc001uej.1	-	10	1507	c.1368C>T	c.(1366-1368)TTC>TTT	p.F456F	PITPNM2_uc001uek.1_Silent_p.F456F	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	456					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		TGACGGTGTCGAACACGTTGG	0.672													33	86					0	0	1	0	0
PITPNM2	57605	broad.mit.edu	37	12	123489863	123489863	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123489863C>T	uc001uej.1	-	6	1015	c.876G>A	c.(874-876)GGG>GGA	p.G292G	PITPNM2_uc001uek.1_Silent_p.G292G|PITPNM2_uc009zxu.1_Silent_p.G292G	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	292					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		CTAGGGGCTCCCCATTGCTGC	0.647													26	52					0	0	1	0	0
PITPNM2	57605	broad.mit.edu	37	12	123494522	123494522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123494522G>A	uc001uej.1	-	5	657	c.518C>T	c.(517-519)TCC>TTC	p.S173F	PITPNM2_uc001uek.1_Missense_Mutation_p.S173F|PITPNM2_uc009zxu.1_Missense_Mutation_p.S173F	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	173					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		CCAGTTCTCGGACAGGGGCCC	0.552													72	138					0	0	1	0	0
PITPNM2	57605	broad.mit.edu	37	12	123498383	123498383	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123498383G>A	uc001uej.1	-	3	424	c.285C>T	c.(283-285)ACC>ACT	p.T95T	PITPNM2_uc001uek.1_Silent_p.T95T|PITPNM2_uc009zxu.1_Silent_p.T95T	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	95					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		ACCTGGTTCGGGTGTAGGGGT	0.602													5	23					0	0	1	0	0
CDK2AP1	8099	broad.mit.edu	37	12	123751787	123751787	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123751787G>A	uc001ueq.2	-	2	620	c.98C>T	c.(97-99)TCA>TTA	p.S33L	CDK2AP1_uc001uep.2_RNA	NM_004642	NP_004633	O14519	CDKA1_HUMAN	CDK2-associated protein  1	33					DNA-dependent DNA replication|protein phosphorylation|S phase of mitotic cell cycle	cytoplasm|nucleus	DNA binding|protein binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000554)|Epithelial(86;0.00178)		GCGGTACTGTGAAGACGTTGC	0.622													23	78					0	0	1	0	0
SBNO1	55206	broad.mit.edu	37	12	123821032	123821032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:123821032G>A	uc010tap.1	-	5	658	c.658C>T	c.(658-660)CCT>TCT	p.P220S	SBNO1_uc010tao.1_Missense_Mutation_p.P219S|SBNO1_uc010taq.1_Intron|SBNO1_uc001uet.2_Missense_Mutation_p.P220S|SBNO1_uc001ueu.2_Missense_Mutation_p.P219S|SBNO1_uc001uev.2_Missense_Mutation_p.P218S|SBNO1_uc009zxy.1_Missense_Mutation_p.P185S	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	220							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		tttACAACAGGAACCTTCTGC	0.348													11	29					0	0	1	0	0
DDX55	57696	broad.mit.edu	37	12	124090660	124090660	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124090660T>A	uc001ufi.2	+	3	224	c.200T>A	c.(199-201)ATC>AAC	p.I67N	DDX55_uc001ufh.2_5'UTR|DDX55_uc001ufj.1_5'UTR|DDX55_uc001ufk.2_5'Flank	NM_020936	NP_065987	Q8NHQ9	DDX55_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	67	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000142)|Epithelial(86;0.000637)|all cancers(50;0.00772)		GTCATCCCCATCCTGGAAATT	0.423													13	46					0	0	1	0	0
DDX55	57696	broad.mit.edu	37	12	124094582	124094582	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124094582C>T	uc001ufi.2	+	7	672	c.648C>T	c.(646-648)GGC>GGT	p.G216G	DDX55_uc001ufh.2_Silent_p.G69G|DDX55_uc001ufj.1_Silent_p.G69G|DDX55_uc001ufk.2_Silent_p.G69G	NM_020936	NP_065987	Q8NHQ9	DDX55_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	216	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000142)|Epithelial(86;0.000637)|all cancers(50;0.00772)		TGAGAGCGGGCCTCCGGAACC	0.577													24	52					0	0	1	0	0
GTF2H3	2967	broad.mit.edu	37	12	124135583	124135583	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124135583C>T	uc001ufo.1	+	5	433	c.407C>T	c.(406-408)TCC>TTC	p.S136F	GTF2H3_uc010tau.1_Missense_Mutation_p.S95F	NM_001516	NP_001507	Q13889	TF2H3_HUMAN	general transcription factor IIH, polypeptide 3,	136					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	core TFIIH complex|holo TFIIH complex	damaged DNA binding|metal ion binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|translation factor activity, nucleic acid binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.1e-05)|Epithelial(86;0.000388)|all cancers(50;0.00362)		CTGGCAGGATCCCTGGCCAAA	0.368								NER					23	44					0	0	1	0	0
TCTN2	79867	broad.mit.edu	37	12	124172600	124172600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124172600C>T	uc001ufp.2	+	7	895	c.767C>T	c.(766-768)TCC>TTC	p.S256F	TCTN2_uc009zya.2_Missense_Mutation_p.S255F	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	256	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		ATTTTCAGTTCCCCCAAACAG	0.308													48	164					0	0	1	0	0
ATP6V0A2	23545	broad.mit.edu	37	12	124229290	124229290	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124229290C>T	uc001ufr.2	+	12	1721	c.1473C>T	c.(1471-1473)TCC>TCT	p.S491S		NM_012463	NP_036595	Q9Y487	VPP2_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	491	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|immune response|insulin receptor signaling pathway|transferrin transport	endosome membrane|integral to membrane|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000224)|Epithelial(86;0.000625)|all cancers(50;0.00775)		TGTACAGCTCCAGCCACCCAC	0.527													22	61					0	0	1	0	0
ATP6V0A2	23545	broad.mit.edu	37	12	124239059	124239059	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124239059C>T	uc001ufr.2	+	18	2516	c.2268C>T	c.(2266-2268)CTC>CTT	p.L756L		NM_012463	NP_036595	Q9Y487	VPP2_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	756	Helical; (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|immune response|insulin receptor signaling pathway|transferrin transport	endosome membrane|integral to membrane|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000224)|Epithelial(86;0.000625)|all cancers(50;0.00775)		ACCTGAGGCTCTGGGCGCTTA	0.383													13	59					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124258721	124258721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124258721G>A	uc001uft.3	+	5	373	c.348G>A	c.(346-348)ATG>ATA	p.M116I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	116	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTACCGACATGAAGGAAGCTA	0.403													20	84					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124268560	124268560	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124268560G>A	uc001uft.3	+	8	908	c.883G>A	c.(883-885)GAA>AAA	p.E295K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	295	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGCGCTGCATGAACAAACAAA	0.443													23	52					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124305219	124305219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124305219C>T	uc001uft.3	+	23	3764	c.3739C>T	c.(3739-3741)CCT>TCT	p.P1247S		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1247	TPR 1.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TTTCGATCTTCCTATTACAAT	0.443													21	76					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124311371	124311371	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124311371G>A	uc001uft.3	+	24	3988	c.3963G>A	c.(3961-3963)TTG>TTA	p.L1321L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1321	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CCTACTACTTGGAAGCAAAAA	0.453													40	60					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124317829	124317829	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124317829G>C	uc001uft.3	+	26	4385	c.4360G>C	c.(4360-4362)GGG>CGG	p.G1454R		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1454	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CAGATTTGTGGGGCCTTTTCT	0.433													3	31					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124325875	124325875	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124325875G>A	uc001uft.3	+	29	4814	c.4789G>A	c.(4789-4791)GAC>AAC	p.D1597N		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1597	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GCAGATGTACGACAACATAGC	0.512													22	179					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124333366	124333366	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124333366C>T	uc001uft.3	+	33	5710	c.5685C>T	c.(5683-5685)TCC>TCT	p.S1895S		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1895	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTGTGCTCTCCGTGATCTCCT	0.542													6	21					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124345682	124345682	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124345682G>A	uc001uft.3	+	38	6544	c.6519G>A	c.(6517-6519)AGG>AGA	p.R2173R		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2173	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ACATCTTCAGGGAAATCAACA	0.453													12	20					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124359953	124359953	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124359953C>T	uc001uft.3	+	46	7785	c.7760C>T	c.(7759-7761)TCG>TTG	p.S2587L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2587	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AGATTTATTTCGCTATTCAGT	0.443													14	50					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124360020	124360020	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124360020C>T	uc001uft.3	+	46	7852	c.7827C>T	c.(7825-7827)ATC>ATT	p.I2609I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2609	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ATTCCTCCATCCTGAAAGGCC	0.383													28	84					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124371784	124371784	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124371784G>A	uc001uft.3	+	51	8590	c.8565G>A	c.(8563-8565)GCG>GCA	p.A2855A		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2855	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AGAACAAAGCGATGATCTTTC	0.542													15	26					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124401062	124401062	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124401062G>A	uc001uft.3	+	62	10452	c.10427G>A	c.(10426-10428)GGG>GAG	p.G3476E		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3476	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ATAAAGTACGGGACCCCTTTC	0.453													16	113					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124401103	124401103	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124401103C>T	uc001uft.3	+	62	10493	c.10468C>T	c.(10468-10470)CCT>TCT	p.P3490S		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3490	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ATACATCGATCCTGTGATTGA	0.433													14	73					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124403488	124403488	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124403488G>A	uc001uft.3	+	64	11169	c.11144G>A	c.(11143-11145)GGC>GAC	p.G3715D		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3715					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TATAACCACGGCTGCACAGGT	0.498													6	72					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124413966	124413966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124413966G>A	uc001uft.3	+	70	12122	c.12097G>A	c.(12097-12099)GAG>AAG	p.E4033K	DNAH10_uc001ufu.3_5'UTR	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	4033	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGTGGTGCAGGAGAGAAGGAA	0.517													7	27					0	0	1	0	0
CCDC92	80212	broad.mit.edu	37	12	124421994	124421994	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124421994G>A	uc001ufw.1	-	5	754	c.607C>T	c.(607-609)CGC>TGC	p.R203C	CCDC92_uc001ufv.1_Missense_Mutation_p.R186C|CCDC92_uc001ufx.1_Missense_Mutation_p.R203C|CCDC92_uc001ufy.1_Missense_Mutation_p.R186C	NM_025140	NP_079416	Q53HC0	CCD92_HUMAN	coiled-coil domain containing 92	203											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.0002)|OV - Ovarian serous cystadenocarcinoma(86;0.000222)|all cancers(50;0.00129)|BRCA - Breast invasive adenocarcinoma(302;0.242)		ATGCGGCGGCGAGGCGTTTCG	0.617													25	59					0	0	1	0	0
NCOR2	9612	broad.mit.edu	37	12	124840115	124840115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124840115G>A	uc010tba.1	-	24	3385	c.3268C>T	c.(3268-3270)CAC>TAC	p.H1090Y	NCOR2_uc010tay.1_Missense_Mutation_p.H1089Y|NCOR2_uc010taz.1_Missense_Mutation_p.H1073Y|NCOR2_uc010tbb.1_Missense_Mutation_p.H1082Y|NCOR2_uc010tbc.1_Missense_Mutation_p.H1072Y|NCOR2_uc001ugj.1_Missense_Mutation_p.H1090Y	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1090					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GGCAGTGGGTGACCTGTGGAG	0.677													10	12					0	0	1	0	0
NCOR2	9612	broad.mit.edu	37	12	124846820	124846820	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124846820G>A	uc010tba.1	-	22	3069	c.2952C>T	c.(2950-2952)CCC>CCT	p.P984P	NCOR2_uc010tay.1_Silent_p.P983P|NCOR2_uc010taz.1_Silent_p.P967P|NCOR2_uc010tbb.1_Silent_p.P984P|NCOR2_uc010tbc.1_Silent_p.P966P|NCOR2_uc001ugj.1_Silent_p.P984P	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	984					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CCTCCCGGGGGGGCTCATGGA	0.647													6	11					0	0	1	0	0
NCOR2	9612	broad.mit.edu	37	12	124848315	124848315	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124848315G>A	uc010tba.1	-	21	2955	c.2838C>T	c.(2836-2838)ACC>ACT	p.T946T	NCOR2_uc010tay.1_Silent_p.T946T|NCOR2_uc010taz.1_Silent_p.T929T|NCOR2_uc010tbb.1_Silent_p.T946T|NCOR2_uc010tbc.1_Silent_p.T928T|NCOR2_uc001ugj.1_Silent_p.T946T	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	946					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CGCCAGTCGGGGTGAGGAGGC	0.716													30	56					0	0	1	0	0
NCOR2	9612	broad.mit.edu	37	12	124856640	124856640	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124856640G>A	uc010tba.1	-	20	2852	c.2735C>T	c.(2734-2736)CCC>CTC	p.P912L	NCOR2_uc010tay.1_Missense_Mutation_p.P912L|NCOR2_uc010taz.1_Missense_Mutation_p.P895L|NCOR2_uc010tbb.1_Missense_Mutation_p.P912L|NCOR2_uc010tbc.1_Missense_Mutation_p.P894L|NCOR2_uc001ugj.1_Missense_Mutation_p.P912L	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	912					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GCTGTCCTGGGGGGCGCCCGA	0.706													20	66					0	0	1	0	0
NCOR2	9612	broad.mit.edu	37	12	124915205	124915205	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:124915205G>A	uc010tba.1	-	9	1128	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	NCOR2_uc010tay.1_Silent_p.F337F|NCOR2_uc010taz.1_Silent_p.F337F|NCOR2_uc010tbb.1_Silent_p.F337F|NCOR2_uc010tbc.1_Silent_p.F337F|NCOR2_uc001ugj.1_Silent_p.F337F|NCOR2_uc001ugk.1_Silent_p.F337F	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	337					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GGATCTCAGGGAACTGCTTCT	0.677													38	118					0	0	1	0	0
SCARB1	949	broad.mit.edu	37	12	125270724	125270724	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125270724G>A	uc001ugo.3	-	11	1833	c.1580C>T	c.(1579-1581)TCT>TTT	p.S527F	SCARB1_uc001ugn.3_Intron|SCARB1_uc001ugm.3_Intron|SCARB1_uc010tbd.1_Intron|SCARB1_uc010tbe.1_Missense_Mutation_p.S486F|SCARB1_uc001ugp.3_Missense_Mutation_p.S527F	NM_005505	NP_005496	Q8WTV0	SCRB1_HUMAN	scavenger receptor class B, member 1 isoform 1	527	Cytoplasmic (Potential).				adhesion to symbiont|cell adhesion|cholesterol efflux|cholesterol homeostasis|cholesterol import|detection of lipopolysaccharide|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|lipopolysaccharide transport|lipoprotein metabolic process|positive regulation of cholesterol storage|positive regulation of endothelial cell migration|positive regulation of nitric-oxide synthase activity|recognition of apoptotic cell|reverse cholesterol transport|triglyceride homeostasis|wound healing	caveola	1-phosphatidylinositol binding|apolipoprotein A-I binding|high-density lipoprotein particle receptor activity|lipopolysaccharide receptor activity|low-density lipoprotein particle binding|phosphatidylserine binding|transporter activity			kidney(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000116)|Epithelial(86;0.000415)|all cancers(50;0.00395)	Phosphatidylserine(DB00144)	GCATGCAAAAGACGCAAGCGT	0.642													8	9					0	0	1	0	0
UBC	7316	broad.mit.edu	37	12	125396438	125396438	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125396438G>A	uc001ugs.3	-	2	2328	c.1880C>T	c.(1879-1881)CCC>CTC	p.P627L	UBC_uc001ugr.2_RNA|UBC_uc001ugu.1_Missense_Mutation_p.P551L|UBC_uc001ugt.2_Missense_Mutation_p.P475L|UBC_uc001ugv.2_Missense_Mutation_p.P95L	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	627	Ubiquitin-like 9.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		GGTGTCACTGGGCTCCACCTC	0.527													63	167					0	0	1	0	0
UBC	7316	broad.mit.edu	37	12	125397806	125397806	+	Missense_Mutation	SNP	G	A	A	rs143365567		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125397806G>A	uc001ugs.3	-	2	960	c.512C>T	c.(511-513)CCC>CTC	p.P171L	UBC_uc001ugr.2_5'Flank|UBC_uc001ugu.1_Missense_Mutation_p.P171L|UBC_uc001ugt.2_Missense_Mutation_p.P171L|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_Missense_Mutation_p.P19L	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	171	Ubiquitin-like 3.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		GGTGTCACTGGGCTCCACCTC	0.517													24	198					0	0	1	0	0
DHX37	57647	broad.mit.edu	37	12	125435305	125435305	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125435305G>A	uc001ugy.2	-	22	3013	c.2914C>T	c.(2914-2916)CTT>TTT	p.L972F	DHX37_uc001ugz.1_Missense_Mutation_p.L59F	NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	972							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		TCTTTGAAAAGGACGGAGCTG	0.582													24	54					0	0	1	0	0
AACS	65985	broad.mit.edu	37	12	125591686	125591686	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125591686C>T	uc001uhc.2	+	8	993	c.787C>T	c.(787-789)CTT>TTT	p.L263F	AACS_uc009zyg.2_RNA|AACS_uc001uhd.2_Missense_Mutation_p.L263F|AACS_uc009zyh.2_RNA|AACS_uc009zyi.2_5'UTR	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	263					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		GGATGACTTTCTTGCCACCGG	0.607													25	60					0	0	1	0	0
AACS	65985	broad.mit.edu	37	12	125599088	125599088	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125599088C>T	uc001uhc.2	+	9	1187	c.981C>T	c.(979-981)CTC>CTT	p.L327L	AACS_uc001uhd.2_Silent_p.L327L|AACS_uc009zyh.2_RNA|AACS_uc009zyi.2_5'UTR	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	327					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		GTGACATCCTCCTGTGCTACA	0.602													8	31					0	0	1	0	0
AACS	65985	broad.mit.edu	37	12	125621339	125621339	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125621339C>T	uc001uhc.2	+	17	2016	c.1810C>T	c.(1810-1812)CGT>TGT	p.R604C	AACS_uc001uhd.2_Intron|AACS_uc009zyh.2_RNA|AACS_uc009zyi.2_Missense_Mutation_p.R202C	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	604					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		TAAGAGGATCCGTGACGCCAT	0.607													16	72					0	0	1	0	0
AACS	65985	broad.mit.edu	37	12	125621386	125621386	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125621386C>T	uc001uhc.2	+	17	2063	c.1857C>T	c.(1855-1857)CTC>CTT	p.L619L	AACS_uc001uhd.2_Intron|AACS_uc009zyh.2_RNA|AACS_uc009zyi.2_Silent_p.L217L	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	619					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		TGCCCAGCCTCATCCTGGAAA	0.632													20	44					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834479	125834479	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125834479G>A	uc001uhe.1	+	2	542	c.534G>A	c.(532-534)GGG>GGA	p.G178G		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	178	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGCTGCAAGGGGCCCCAGGGC	0.627													26	73					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834783	125834783	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:125834783G>A	uc001uhe.1	+	2	846	c.838G>A	c.(838-840)GAG>AAG	p.E280K		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	280	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GAGCTTGGACGAGAATGTGGT	0.567													63	157					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126004086	126004086	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:126004086C>T	uc001uhe.1	+	4	1201	c.1193C>T	c.(1192-1194)CCG>CTG	p.P398L		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	398	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GTGGAGTACCCGATTGAGGAC	0.532													21	80					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126128661	126128661	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:126128661G>A	uc001uhe.1	+	6	1470	c.1462G>A	c.(1462-1464)GAA>AAA	p.E488K	TMEM132B_uc001uhf.1_5'UTR	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	488	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GAATGGGAAGGAAATGAAGAG	0.483													22	62					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126137028	126137028	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:126137028G>A	uc001uhe.1	+	8	1949	c.1941G>A	c.(1939-1941)ACG>ACA	p.T647T	TMEM132B_uc001uhf.1_Silent_p.T159T	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	647	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CTGAGAAGACGGTGATTGTCC	0.572													15	32					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126137038	126137038	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:126137038C>T	uc001uhe.1	+	8	1959	c.1951C>T	c.(1951-1953)CTG>TTG	p.L651L	TMEM132B_uc001uhf.1_Silent_p.L163L	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	651	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGTGATTGTCCTGGATGACCG	0.582													8	40					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138293	126138293	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:126138293G>A	uc001uhe.1	+	9	2282	c.2274G>A	c.(2272-2274)TTG>TTA	p.L758L	TMEM132B_uc001uhf.1_Silent_p.L270L	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	758	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AAGGGCCTTTGATTAAGTTAG	0.438													18	118					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138985	126138985	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:126138985C>T	uc001uhe.1	+	9	2974	c.2966C>T	c.(2965-2967)TCC>TTC	p.S989F	TMEM132B_uc001uhf.1_Missense_Mutation_p.S501F	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	989	Cytoplasmic (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AATGGCAGTTCCCAGAAGACT	0.453													15	22					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138999	126138999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:126138999C>T	uc001uhe.1	+	9	2988	c.2980C>T	c.(2980-2982)CAT>TAT	p.H994Y	TMEM132B_uc001uhf.1_Missense_Mutation_p.H506Y	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	994	Cytoplasmic (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GAAGACTTTTCATAGTCAACT	0.448													13	27					0	0	1	0	0
SLC15A4	121260	broad.mit.edu	37	12	129283928	129283928	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:129283928G>A	uc001uhu.2	-	7	1502	c.1449C>T	c.(1447-1449)TCC>TCT	p.S483S	SLC15A4_uc001uhv.2_RNA	NM_145648	NP_663623	Q8N697	S15A4_HUMAN	solute carrier family 15, member 4	483					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.69e-06)|Epithelial(86;1.17e-05)|all cancers(50;5.07e-05)		CACTCTGCATGGACTTGGGGG	0.502													7	65					0	0	1	0	0
FZD10	11211	broad.mit.edu	37	12	130648104	130648104	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130648104C>T	uc001uii.2	+	1	1073	c.617C>T	c.(616-618)TCG>TTG	p.S206L	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	206	Extracellular (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		AAGAGCGCGTCGTGCGCGCCG	0.617													4	22					0	0	1	0	0
PIWIL1	9271	broad.mit.edu	37	12	130831552	130831552	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130831552G>A	uc001uik.2	+	6	688	c.598G>A	c.(598-600)GAA>AAA	p.E200K	PIWIL1_uc001uij.1_Missense_Mutation_p.E200K	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	200					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		TTTAACAAATGAACTTCCACC	0.313													8	66					0	0	1	0	0
PIWIL1	9271	broad.mit.edu	37	12	130841476	130841476	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130841476C>T	uc001uik.2	+	13	1508	c.1418C>T	c.(1417-1419)CCA>CTA	p.P473L	PIWIL1_uc001uij.1_Missense_Mutation_p.P473L	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	473					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		GATTACAATCCACAATTTGCA	0.368													35	33					0	0	1	0	0
PIWIL1	9271	broad.mit.edu	37	12	130845791	130845791	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130845791G>A	uc001uik.2	+	15	1822	c.1732G>A	c.(1732-1734)GAT>AAT	p.D578N	PIWIL1_uc001uij.1_Missense_Mutation_p.D578N	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	578	RNA-binding (By similarity).|Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		CCTGTGTACAGATTGCCCTAC	0.433													21	31					0	0	1	0	0
PIWIL1	9271	broad.mit.edu	37	12	130846099	130846099	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130846099G>A	uc001uik.2	+	16	2013	c.1923G>A	c.(1921-1923)CGG>CGA	p.R641R	PIWIL1_uc001uij.1_Silent_p.R641R	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	641	RNA-binding (By similarity).|Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		CAGCTGGGCGGAGGTCAATCG	0.483													14	98					0	0	1	0	0
PIWIL1	9271	broad.mit.edu	37	12	130855747	130855747	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130855747C>T	uc001uik.2	+	20	2438	c.2348C>T	c.(2347-2349)GCT>GTT	p.A783V	PIWIL1_uc001uij.1_Missense_Mutation_p.A783V	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	783	Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		GTGAGCCAGGCTGTGAGAAGT	0.443													63	112					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130919328	130919328	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130919328C>T	uc001uil.2	-	11	2317	c.2153G>A	c.(2152-2154)AGG>AAG	p.R718K	RIMBP2_uc001uim.2_Missense_Mutation_p.R626K|RIMBP2_uc001uin.1_Missense_Mutation_p.R377K	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	718						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CGAGGCGCCCCTCCTCTTGAA	0.627													54	81					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130926778	130926778	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130926778C>T	uc001uil.2	-	8	1232	c.1068G>A	c.(1066-1068)AAG>AAA	p.K356K	RIMBP2_uc001uim.2_Silent_p.K264K|RIMBP2_uc001uin.1_Silent_p.K15K	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	356	Fibronectin type-III 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CCATGTTGAGCTTCTCGATGA	0.612													26	63					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130927205	130927205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130927205C>T	uc001uil.2	-	8	805	c.641G>A	c.(640-642)GGA>GAA	p.G214E	RIMBP2_uc001uim.2_Missense_Mutation_p.G122E|RIMBP2_uc001uin.1_5'UTR	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	214	SH3 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GAGGAGCTCTCCTGTTGGGTA	0.617													5	35					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130934774	130934774	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:130934774C>T	uc001uil.2	-	6	665	c.501G>A	c.(499-501)GGG>GGA	p.G167G	RIMBP2_uc001uim.2_Silent_p.G75G	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	167	SH3 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GGTGGACCTTCCCCGAGTATC	0.562													4	25					0	0	1	0	0
GPR133	283383	broad.mit.edu	37	12	131466464	131466464	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:131466464G>A	uc001uit.3	+	5	905	c.346G>A	c.(346-348)GAA>AAA	p.E116K	GPR133_uc010tbm.1_Missense_Mutation_p.E148K	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	116	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		GACACAAGGAGAACAGTCTAG	0.502													14	83					0	0	1	0	0
SFRS8	6433	broad.mit.edu	37	12	132212883	132212883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:132212883C>T	uc001uja.1	+	7	1131	c.991C>T	c.(991-993)CGT>TGT	p.R331C	SFRS8_uc010tbn.1_Missense_Mutation_p.R331C|SFRS8_uc001ujb.1_Missense_Mutation_p.R124C|SFRS8_uc001uiz.1_Missense_Mutation_p.R205C	NM_004592	NP_004583	Q12872	SFSWA_HUMAN	splicing factor, arginine/serine-rich 8	331					mRNA splice site selection|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|RNA binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.44e-07)|Epithelial(86;2.94e-06)|all cancers(50;4.82e-05)		AGCACTTGTTCGTAAGGCACA	0.552													42	81					0	0	1	0	0
MMP17	4326	broad.mit.edu	37	12	132334539	132334539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:132334539C>T	uc001ujc.1	+	9	1496	c.1397C>T	c.(1396-1398)CCC>CTC	p.P466L	MMP17_uc001ujd.1_Missense_Mutation_p.P382L	NM_016155	NP_057239	Q9ULZ9	MMP17_HUMAN	matrix metalloproteinase 17 preproprotein	466	Hemopexin-like 3.				proteolysis	anchored to membrane|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.82e-07)|Epithelial(86;1.51e-06)|all cancers(50;2.35e-05)		CCCGGCTACCCCGCCCAGAGC	0.657													30	44					0	0	1	0	0
ULK1	8408	broad.mit.edu	37	12	132400950	132400950	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:132400950C>T	uc001uje.2	+	20	2154	c.1886C>T	c.(1885-1887)CCC>CTC	p.P629L		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	629					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		TAGGCTGTGCCCTCCTTTGAC	0.692													18	120					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132445295	132445295	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:132445295C>T	uc001ujn.2	+	1	166	c.131C>T	c.(130-132)CCC>CTC	p.P44L	EP400_uc001ujl.2_Missense_Mutation_p.P44L|EP400_uc001ujm.2_Missense_Mutation_p.P44L|EP400_uc001ujj.1_Missense_Mutation_p.P44L|EP400_uc001ujk.2_Missense_Mutation_p.P44L	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	44					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CCCTTCGCTCCCTCAGCAAGC	0.652													24	30					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132471079	132471079	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:132471079C>T	uc001ujn.2	+	5	1985	c.1950C>T	c.(1948-1950)CTC>CTT	p.L650L	EP400_uc001ujl.2_Silent_p.L649L|EP400_uc001ujm.2_Silent_p.L650L|EP400_uc001ujj.1_Silent_p.L613L|EP400_uc001ujk.2_Silent_p.L686L	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	686					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CGACAAGGCTCCCTGTGGACC	0.652													43	68					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132471171	132471171	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:132471171C>T	uc001ujn.2	+	5	2077	c.2042C>T	c.(2041-2043)TCC>TTC	p.S681F	EP400_uc001ujl.2_Missense_Mutation_p.S680F|EP400_uc001ujm.2_Missense_Mutation_p.S681F|EP400_uc001ujj.1_Missense_Mutation_p.S644F|EP400_uc001ujk.2_Missense_Mutation_p.S717F	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	717					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CCAGGACCCTCCCCTGCTCGA	0.652													41	55					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132529451	132529451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:132529451C>T	uc001ujn.2	+	36	6772	c.6737C>T	c.(6736-6738)CCT>CTT	p.P2246L	EP400_uc001ujl.2_Missense_Mutation_p.P2245L|EP400_uc001ujm.2_Missense_Mutation_p.P2165L	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2282					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		AAGCTGCCCCCTGTGTACGTG	0.627													27	45					0	0	1	0	0
POLE	5426	broad.mit.edu	37	12	133208969	133208969	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:133208969G>A	uc001uks.1	-	45	6306	c.6262C>T	c.(6262-6264)CCT>TCT	p.P2088S	POLE_uc001ukq.1_Missense_Mutation_p.P298S|POLE_uc001ukr.1_Missense_Mutation_p.P892S|POLE_uc010tbq.1_RNA	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	2088					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GGGAGGACAGGAAACATCTCT	0.522								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					9	68					0	0	1	0	0
PXMP2	5827	broad.mit.edu	37	12	133272542	133272542	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:133272542C>T	uc001ukt.2	+	3	374	c.309C>T	c.(307-309)CCC>CCT	p.P103P	PGAM5_uc010tbr.1_Intron	NM_018663	NP_061133	Q9NR77	PXMP2_HUMAN	peroxisomal membrane protein 2, 22kDa	103	Cytoplasmic (Potential).					integral to membrane|peroxisomal membrane	protein binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.86e-08)|Epithelial(86;2.47e-07)|all cancers(50;6.85e-06)		CTGAGGTCCCCCTGGCAGGGC	0.572													6	51					0	0	1	0	0
ANKLE2	23141	broad.mit.edu	37	12	133306681	133306681	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:133306681G>A	uc001ukx.2	-	11	2134	c.2067C>T	c.(2065-2067)GCC>GCT	p.A689A	ANKLE2_uc009zyw.1_Silent_p.A44A	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	689						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		CTCCCGGCTCGGCGGCTTCTA	0.622													12	97					0	0	1	0	0
GOLGA3	2802	broad.mit.edu	37	12	133389993	133389993	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:133389993G>A	uc001ukz.1	-	4	978	c.419C>T	c.(418-420)TCT>TTT	p.S140F	GOLGA3_uc001ula.1_Missense_Mutation_p.S140F|GOLGA3_uc001ulb.2_Missense_Mutation_p.S140F	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	140	Interaction with GOPC.	Cleavage; by caspase-3.			intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		GGGCAGGGGAGAATCTGTAGA	0.512													15	19					0	0	1	0	0
CHFR	55743	broad.mit.edu	37	12	133428221	133428221	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:133428221C>G	uc001ulf.2	-	12	1595	c.1511G>C	c.(1510-1512)CGT>CCT	p.R504P	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Missense_Mutation_p.R492P|CHFR_uc010tbs.1_Missense_Mutation_p.R503P|CHFR_uc001uld.2_Missense_Mutation_p.R463P|CHFR_uc010tbt.1_Missense_Mutation_p.R412P	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	504					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		AGGGGCGACACGCGGGTCCTG	0.657													58	93					0	0	1	0	0
ZNF605	100289635	broad.mit.edu	37	12	133502373	133502373	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:133502373G>A	uc001ulh.2	-	5	1837	c.1512C>T	c.(1510-1512)CCC>CCT	p.P504P	ZNF605_uc001uli.2_Silent_p.P535P|ZNF605_uc001ulj.2_Silent_p.P504P	NM_183238	NP_899061	Q86T29	ZN605_HUMAN	zinc finger protein 605 isoform 1	504					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00227)|all_epithelial(31;0.142)		OV - Ovarian serous cystadenocarcinoma(86;9.24e-09)|Epithelial(86;2.11e-07)|all cancers(50;5.27e-06)		TACATTCAAAGGGCTTTTCTC	0.428													20	25					0	0	1	0	0
ZNF268	10795	broad.mit.edu	37	12	133780482	133780482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:133780482C>T	uc010tcf.1	+	6	2540	c.2210C>T	c.(2209-2211)TCA>TTA	p.S737L	ZNF268_uc010tbv.1_Missense_Mutation_p.S576L|ZNF268_uc010tbw.1_Missense_Mutation_p.S576L|ZNF268_uc010tbx.1_Missense_Mutation_p.S597L|ZNF268_uc010tby.1_Missense_Mutation_p.S576L|ZNF268_uc010tbz.1_Missense_Mutation_p.S576L|ZNF268_uc010tca.1_Missense_Mutation_p.S576L|ZNF268_uc010tcb.1_Missense_Mutation_p.S597L|ZNF268_uc010tcc.1_Missense_Mutation_p.S576L|ZNF268_uc010tcd.1_Missense_Mutation_p.S576L|ZNF268_uc010tce.1_Missense_Mutation_p.S576L|ZNF268_uc010tcg.1_Missense_Mutation_p.S576L|ZNF268_uc010tch.1_Missense_Mutation_p.S737L	NM_003415	NP_003406	Q14587	ZN268_HUMAN	zinc finger protein 268 isoform a	737	C2H2-type 17.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.000215)|all_epithelial(31;0.096)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		AGTTTCAATTCACAACTCATT	0.408													3	16					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19411887	19411887	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19411887G>A	uc010tcj.1	-	1		c.34223C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						gtagcaagcagagatcccacc	0.129													4	38					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19411897	19411897	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19411897C>T	uc010tcj.1	-	1		c.34213G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						gagatcccaccactgcactcc	0.154													16	29					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19411954	19411954	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19411954G>A	uc010tcj.1	-	1		c.34156C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GGAATCCATCGACTTGTTACC	0.259													23	67					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19412022	19412022	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19412022G>A	uc010tcj.1	-	1		c.34088C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATTAGCCTGAGATATTTCTTG	0.393													43	100					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19412170	19412170	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19412170G>A	uc010tcj.1	-	1		c.33940C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TCACTGACCAGACATAATCAG	0.532													15	120					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19412487	19412487	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19412487G>A	uc010tcj.1	-	1		c.33623C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTCTACTTCGGAAATATCAGA	0.343													16	54					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19415765	19415765	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19415765C>T	uc010tcj.1	-	1		c.30345G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTGGGTTAATCTGTCAGCAGC	0.338													18	58					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19426164	19426164	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19426164C>T	uc010tcj.1	-	1		c.19946G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCCAACCATTCATGCAGTGTT	0.388													40	111					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19426235	19426235	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19426235C>T	uc010tcj.1	-	1		c.19875G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTTGAGGGTTCTTCTTGGCTT	0.383													10	34					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19426254	19426254	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19426254C>T	uc010tcj.1	-	1		c.19856G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTCTTCTTTTCATTGCCTAGG	0.383													5	21					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19428801	19428801	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19428801G>A	uc010tcj.1	-	1		c.17309C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ggattatcccgatctcctgac	0.025													6	16					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19428817	19428817	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19428817G>A	uc010tcj.1	-	1		c.17293C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ctgaccttgtgatccgcccac	0.055													13	17					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19433006	19433006	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19433006G>A	uc010tcj.1	-	1		c.13104C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CACAGTTCATGGAAAATGCTT	0.363													20	68					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19444786	19444786	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19444786C>T	uc010tcj.1	-	1		c.1324G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATTAACTGGCCTTTTAACATA	0.313													22	87					0	0	1	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19624112	19624112	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19624112G>A	uc001umb.1	-	9		c.3371C>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						AGGGGATGAAGAGGGTCTGGC	0.577													23	57					0	0	1	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19625500	19625500	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19625500G>A	uc001umb.1	-	8		c.3023C>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						GGTGGGACAGGAAGGTGGTGA	0.562													5	15					0	0	1	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19636803	19636803	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19636803C>T	uc001umb.1	-	6		c.779G>A				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						GCCTCCTCCTCTTCCACTCCC	0.527													10	18					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19748171	19748171	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19748171G>A	uc009zzj.2	-	5	1234	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	395					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		ACATGAGATCGAACTTATGGT	0.642													57	158					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19752519	19752519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19752519C>T	uc009zzj.2	-	3	291	c.242G>A	c.(241-243)GGA>GAA	p.G81E		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	81					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		CCTATAGGTTCCTGTGCGCAC	0.488													31	79					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19753537	19753537	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:19753537C>T	uc009zzj.2	-	2	219	c.170G>A	c.(169-171)GGA>GAA	p.G57E		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	57					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		CTTGCCAGCTCCAGTCTCACT	0.562													29	108					0	0	1	0	0
TPTE2	93492	broad.mit.edu	37	13	20024478	20024478	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:20024478C>T	uc001umd.2	-	13	1020	c.809G>A	c.(808-810)AGA>AAA	p.R270K	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.R159K|TPTE2_uc001ume.2_Missense_Mutation_p.R193K|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	270	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ATCATAAGCTCTTTCACCTAA	0.294													33	87					0	0	1	0	0
TPTE2	93492	broad.mit.edu	37	13	20048142	20048142	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:20048142G>A	uc001umd.2	-	7	515	c.304C>T	c.(304-306)CTT>TTT	p.L102F	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Missense_Mutation_p.L65F|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	102						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		GGAATATAAAGTTTGCTGTCA	0.323													40	109					0	0	1	0	0
GJA3	2700	broad.mit.edu	37	13	20717051	20717051	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:20717051G>A	uc001umx.1	-	2	549	c.377C>T	c.(376-378)CCG>CTG	p.P126L		NM_021954	NP_068773	Q9Y6H8	CXA3_HUMAN	connexin 46	126	Cytoplasmic (Potential).				cell-cell signaling|visual perception	connexon complex|integral to membrane				pancreas(1)	1		all_cancers(29;1.4e-21)|all_epithelial(30;8.75e-19)|all_lung(29;1.28e-17)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000554)|Epithelial(112;0.000872)|OV - Ovarian serous cystadenocarcinoma(117;0.0105)|Lung(94;0.0251)|LUSC - Lung squamous cell carcinoma(192;0.0784)		ATTGTCCTGCGGTGGCTCCTT	0.502													3	8					0	0	1	0	0
GJB2	2706	broad.mit.edu	37	13	20763336	20763336	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:20763336C>T	uc001umy.2	-	2	600	c.385G>A	c.(385-387)GAA>AAA	p.E129K		NM_004004	NP_003995	P29033	CXB2_HUMAN	gap junction protein beta 2	129	Cytoplasmic (Potential).		E -> K (in DFNB1A).		cell-cell signaling|cellular membrane organization|gap junction assembly|sensory perception of sound|transport	connexon complex|ER-Golgi intermediate compartment|integral to membrane					0		all_cancers(29;3.95e-22)|all_epithelial(30;2.36e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000435)|Epithelial(112;0.000722)|OV - Ovarian serous cystadenocarcinoma(117;0.0096)|Lung(94;0.0236)|LUSC - Lung squamous cell carcinoma(192;0.0738)		AGGGAGCCTTCGATGCGGACC	0.507									Keratitis_Ichthyosis_and_Deafness_syndrome		OREG0022282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	68					0	0	1	0	0
GJB2	2706	broad.mit.edu	37	13	20763615	20763615	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:20763615G>A	uc001umy.2	-	2	321	c.106C>T	c.(106-108)CTC>TTC	p.L36F		NM_004004	NP_003995	P29033	CXB2_HUMAN	gap junction protein beta 2	36	Helical; (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|sensory perception of sound|transport	connexon complex|ER-Golgi intermediate compartment|integral to membrane					0		all_cancers(29;3.95e-22)|all_epithelial(30;2.36e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000435)|Epithelial(112;0.000722)|OV - Ovarian serous cystadenocarcinoma(117;0.0096)|Lung(94;0.0236)|LUSC - Lung squamous cell carcinoma(192;0.0738)		GCCACAACGAGGATCATAATG	0.542									Keratitis_Ichthyosis_and_Deafness_syndrome		OREG0022282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	86					0	0	1	0	0
GJB6	10804	broad.mit.edu	37	13	20797319	20797319	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:20797319C>T	uc001umz.3	-	3	854	c.301G>A	c.(301-303)GAA>AAA	p.E101K	GJB6_uc001unc.3_Missense_Mutation_p.E101K|GJB6_uc001una.3_Missense_Mutation_p.E101K|GJB6_uc001und.3_Missense_Mutation_p.E101K|GJB6_uc001unb.3_Missense_Mutation_p.E101K	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	101	Cytoplasmic (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		CGAGTGGTTTCGTGCCTGTAG	0.552													12	41					0	0	1	0	0
XPO4	64328	broad.mit.edu	37	13	21396000	21396000	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:21396000G>A	uc001unq.3	-	9	1052	c.1016C>T	c.(1015-1017)TCT>TTT	p.S339F		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	339					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		CACAGCTTCAGAATCTTCTAT	0.338													17	45					0	0	1	0	0
LATS2	26524	broad.mit.edu	37	13	21557827	21557827	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:21557827G>A	uc009zzs.2	-	5	2383	c.2018C>T	c.(2017-2019)ACC>ATC	p.T673I	LATS2_uc001unr.3_Missense_Mutation_p.T673I	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	673	Protein kinase.				cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		GATCCCCAGGGTTTTGATCTT	0.488													45	110					0	0	1	0	0
LATS2	26524	broad.mit.edu	37	13	21563423	21563423	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:21563423G>A	uc009zzs.2	-	4	861	c.496C>T	c.(496-498)CCA>TCA	p.P166S	LATS2_uc001unr.3_Missense_Mutation_p.P166S	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	166					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		CGCGTCACTGGGGTTGGCATG	0.607													22	47					0	0	1	0	0
SKA3	221150	broad.mit.edu	37	13	21732064	21732064	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:21732064G>A	uc001unt.2	-	7	1210	c.1116C>T	c.(1114-1116)CTC>CTT	p.L372L	SKA3_uc001unv.2_Silent_p.L290L|SKA3_uc001unu.2_Silent_p.L372L	NM_145061	NP_659498	Q8IX90	SKA3_HUMAN	SKA3	372					cell division|chromosome segregation|mitosis|regulation of microtubule polymerization or depolymerization	condensed chromosome outer kinetochore|cytoplasm|spindle microtubule	protein binding				0						AAATAACCTGGAGAATATCTT	0.313													19	56					0	0	1	0	0
FGF9	2254	broad.mit.edu	37	13	22275367	22275367	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:22275367C>T	uc001uog.2	+	3	1257	c.420C>T	c.(418-420)TTC>TTT	p.F140F		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	140					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		GAGAACAGTTCGAAGAAAACT	0.294													17	41					0	0	1	0	0
SGCG	6445	broad.mit.edu	37	13	23894882	23894882	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:23894882C>T	uc001uom.2	+	7	840	c.685C>T	c.(685-687)CAT>TAT	p.H229Y	SGCG_uc009zzv.2_Missense_Mutation_p.H229Y|SGCG_uc009zzw.2_Missense_Mutation_p.H229Y	NM_000231	NP_000222	Q13326	SGCG_HUMAN	gamma sarcoglycan	229	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0		all_cancers(29;4.34e-23)|all_epithelial(30;4.4e-19)|all_lung(29;2.45e-18)|Lung SC(185;0.0228)|Breast(139;0.188)		all cancers(112;0.00255)|Epithelial(112;0.0129)|OV - Ovarian serous cystadenocarcinoma(117;0.0365)|Lung(94;0.205)		TATTCTTTTTCATAGTAGTGA	0.438													14	33					0	0	1	0	0
SACS	26278	broad.mit.edu	37	13	23906980	23906980	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:23906980G>A	uc001uon.2	-	10	11624	c.11035C>T	c.(11035-11037)CTT>TTT	p.L3679F	SACS_uc001uoo.2_Missense_Mutation_p.L3532F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3679					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AACTTTATAAGAGGAAGTGTT	0.408													28	77					0	0	1	0	0
SACS	26278	broad.mit.edu	37	13	23912862	23912862	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:23912862G>A	uc001uon.2	-	10	5742	c.5153C>T	c.(5152-5154)TCC>TTC	p.S1718F	SACS_uc001uoo.2_Missense_Mutation_p.S1571F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1718					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GGAAGAGCAGGATTTTTTTTT	0.358													40	29					0	0	1	0	0
SACS	26278	broad.mit.edu	37	13	23915544	23915544	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:23915544G>A	uc001uon.2	-	10	3060	c.2471C>T	c.(2470-2472)TCG>TTG	p.S824L	SACS_uc001uoo.2_Missense_Mutation_p.S677L|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	824				QTCVELIRLRIPSLVILDDES -> FLFDEDSNGKLKMVAV LITSC (in Ref. 3; CAE45964).	cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AATGACTAACGATGGAATCCT	0.383													35	82					0	0	1	0	0
MIPEP	4285	broad.mit.edu	37	13	24455909	24455909	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:24455909G>A	uc001uox.3	-	3	481	c.381C>T	c.(379-381)ATC>ATT	p.I127I		NM_005932	NP_005923	Q99797	MIPEP_HUMAN	mitochondrial intermediate peptidase precursor	127					protein processing involved in protein targeting to mitochondrion|proteolysis	mitochondrial matrix	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		all_cancers(29;1.83e-22)|all_epithelial(30;8.75e-19)|all_lung(29;9.17e-18)|Lung SC(185;0.0225)|Breast(139;0.14)		all cancers(112;0.00389)|Epithelial(112;0.0266)|OV - Ovarian serous cystadenocarcinoma(117;0.0717)|Lung(94;0.207)|GBM - Glioblastoma multiforme(144;0.232)		CAGGGTGAGCGATTTTCACAA	0.458													13	34					0	0	1	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24465472	24465472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:24465472C>T	uc010tcw.1	-	3	958	c.958G>A	c.(958-960)GAT>AAT	p.D320N	MIPEP_uc001uox.3_5'Flank|PCOTH_uc001uoy.2_Intron|PCOTH_uc009zzx.2_Intron|C1QTNF9B_uc010tcv.1_3'UTR|C1QTNF9B_uc001uoz.1_3'UTR|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.D320N	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	320	C1q.					collagen					0						GTTGTGTCATCGTCCTCATCA	0.517													26	96					0	0	1	0	0
SPATA13	221178	broad.mit.edu	37	13	24858320	24858320	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:24858320G>A	uc001upg.1	+	4	744	c.337G>A	c.(337-339)GGT>AGT	p.G113S	SPATA13_uc001upd.1_Missense_Mutation_p.G738S|C1QTNF9_uc001upe.2_RNA|SPATA13_uc010tcy.1_Missense_Mutation_p.G59S|SPATA13_uc010tcz.1_Missense_Mutation_p.G59S|SPATA13_uc010tda.1_Missense_Mutation_p.G57S|SPATA13_uc001uph.2_Missense_Mutation_p.G35S|SPATA13_uc010tdb.1_Missense_Mutation_p.G35S	NM_153023	NP_694568	Q96N96	SPT13_HUMAN	spermatogenesis associated 13	113	ABR (APC-binding region) domain.				cell migration|filopodium assembly|lamellipodium assembly|regulation of cell migration|regulation of Rho protein signal transduction	cytoplasm|filopodium|lamellipodium|ruffle membrane	protein binding|Rac guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		all_cancers(29;4.05e-15)|all_lung(29;2.77e-14)|all_epithelial(30;7.77e-13)|Lung SC(185;0.0279)		all cancers(112;0.00616)|Epithelial(112;0.0195)|OV - Ovarian serous cystadenocarcinoma(117;0.0705)|Lung(94;0.231)		GGATGACAACGgtagtgagga	0.393													17	30					0	0	1	0	0
SPATA13	221178	broad.mit.edu	37	13	24861028	24861028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:24861028C>T	uc001upg.1	+	6	1139	c.732C>T	c.(730-732)GTC>GTT	p.V244V	SPATA13_uc001upd.1_Silent_p.V869V|C1QTNF9_uc001upe.2_RNA|SPATA13_uc010tcy.1_Silent_p.V190V|SPATA13_uc010tcz.1_Intron|SPATA13_uc010tda.1_Silent_p.V188V|SPATA13_uc001uph.2_Silent_p.V166V|SPATA13_uc010tdb.1_Intron|SPATA13_uc009zzz.1_5'Flank	NM_153023	NP_694568	Q96N96	SPT13_HUMAN	spermatogenesis associated 13	244	DH.				cell migration|filopodium assembly|lamellipodium assembly|regulation of cell migration|regulation of Rho protein signal transduction	cytoplasm|filopodium|lamellipodium|ruffle membrane	protein binding|Rac guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		all_cancers(29;4.05e-15)|all_lung(29;2.77e-14)|all_epithelial(30;7.77e-13)|Lung SC(185;0.0279)		all cancers(112;0.00616)|Epithelial(112;0.0195)|OV - Ovarian serous cystadenocarcinoma(117;0.0705)|Lung(94;0.231)		GGACCAACGTCATCCGGGAGA	0.602													29	68					0	0	1	0	0
PARP4	143	broad.mit.edu	37	13	25008807	25008807	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25008807G>A	uc001upl.2	-	31	4578	c.4472C>T	c.(4471-4473)TCC>TTC	p.S1491F		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1491					cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		GGTAGTCCGGGACTGACTGCA	0.488													6	68					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25264840	25264840	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25264840T>A	uc001upp.2	+	7	967	c.780T>A	c.(778-780)TAT>TAA	p.Y260*	ATP12A_uc010aaa.2_Nonsense_Mutation_p.Y260*	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	260	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	TCTGCTTCTATTCCACAACGT	0.547													101	248					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25266961	25266961	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25266961C>T	uc001upp.2	+	10	1491	c.1304C>T	c.(1303-1305)TCC>TTC	p.S435F	ATP12A_uc010aaa.2_Missense_Mutation_p.S441F	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	435	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	ACTTGGGCCTCCTTATCCAAG	0.493													63	267					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25272796	25272796	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25272796C>T	uc001upp.2	+	12	1700	c.1513C>T	c.(1513-1515)CTC>TTC	p.L505F	ATP12A_uc010aaa.2_Missense_Mutation_p.L511F	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	505	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	TCCTTCCCAGCTCTCCATCCA	0.507													23	41					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25272862	25272862	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25272862G>A	uc001upp.2	+	12	1766	c.1579G>A	c.(1579-1581)GAG>AAG	p.E527K	ATP12A_uc010aaa.2_Missense_Mutation_p.E533K	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	527	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GGGGGCCCCTGAGCGCATCCT	0.562													34	75					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25280503	25280503	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25280503G>A	uc001upp.2	+	15	2258	c.2071G>A	c.(2071-2073)GAA>AAA	p.E691K	ATP12A_uc010aaa.2_Missense_Mutation_p.E697K	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	691	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CATGAGCTCAGAACAGCTGGA	0.562													22	56					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25281188	25281188	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25281188G>A	uc001upp.2	+	16	2384	c.2197G>A	c.(2197-2199)GGA>AGA	p.G733R	ATP12A_uc010aaa.2_Missense_Mutation_p.G739R	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	733	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GACCGGGGATGGAGTTAATGA	0.557													14	46					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25281301	25281301	+	Silent	SNP	C	T	T	rs148902783		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25281301C>T	uc001upp.2	+	16	2497	c.2310C>T	c.(2308-2310)TTC>TTT	p.F770F	ATP12A_uc010aaa.2_Silent_p.F776F	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	770	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	ACGACAACTTCGCATCCATCG	0.552													19	49					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25283504	25283504	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25283504C>T	uc001upp.2	+	18	2683	c.2496C>T	c.(2494-2496)ATC>ATT	p.I832I	ATP12A_uc010aaa.2_Silent_p.I838I	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	832	Helical; (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CCCTCTAGATCCCCTCCATTG	0.587													16	81					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25284986	25284986	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25284986C>T	uc001upp.2	+	21	3141	c.2954C>T	c.(2953-2955)TCC>TTC	p.S985F	ATP12A_uc010aaa.2_Missense_Mutation_p.S991F	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	985	Helical; (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CTGATCCTCTCCTATGGCCTC	0.498													26	41					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25341421	25341421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25341421G>A	uc001upr.2	+	2	183	c.142G>A	c.(142-144)GAA>AAA	p.E48K	RNF17_uc010tdd.1_5'UTR|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E48K|RNF17_uc001ups.2_5'UTR|RNF17_uc001upq.1_Missense_Mutation_p.E48K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	48	RING-type.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TCACCATTGTGAACTTCAATG	0.244													23	72					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25376587	25376587	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25376587G>A	uc001upr.2	+	14	1868	c.1827G>A	c.(1825-1827)ATG>ATA	p.M609I	RNF17_uc010tdd.1_Missense_Mutation_p.M468I|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.M609I|RNF17_uc001ups.2_Missense_Mutation_p.M548I	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	609					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CTGTTTCAATGAAAGTTTTTA	0.363													37	84					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25399814	25399814	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25399814G>A	uc001upr.2	+	16	2190	c.2149G>A	c.(2149-2151)GAA>AAA	p.E717K	RNF17_uc010tdd.1_Missense_Mutation_p.E576K|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E717K|RNF17_uc001ups.2_Missense_Mutation_p.E656K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	717					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CTATAAAAGTGAAGATGGAGA	0.358													36	100					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25406065	25406065	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25406065G>A	uc001upr.2	+	18	2472	c.2431G>A	c.(2431-2433)GAA>AAA	p.E811K	RNF17_uc010tdd.1_Missense_Mutation_p.E670K|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E811K|RNF17_uc001ups.2_Missense_Mutation_p.E750K|RNF17_uc010aac.2_Missense_Mutation_p.E9K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	811					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AGAAGCTAAAGAAAAATTTGA	0.289													23	39					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25416232	25416232	+	Missense_Mutation	SNP	C	T	T	rs140457030		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25416232C>T	uc001upr.2	+	19	2577	c.2536C>T	c.(2536-2538)CCT>TCT	p.P846S	RNF17_uc010tdd.1_Missense_Mutation_p.P705S|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.P846S|RNF17_uc001ups.2_Missense_Mutation_p.P785S|RNF17_uc010aac.2_Missense_Mutation_p.P44S|RNF17_uc010aad.2_5'Flank	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	846					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TCTTGGTGCTCCTGAAATGAC	0.343													22	64					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25451229	25451229	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25451229G>A	uc001upr.2	+	34	4719	c.4678G>A	c.(4678-4680)GAG>AAG	p.E1560K	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E1556K|RNF17_uc001ups.2_Missense_Mutation_p.E1499K|RNF17_uc010aac.2_Missense_Mutation_p.E752K|RNF17_uc010aad.2_Missense_Mutation_p.E570K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1560					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GGATCTAGGGGAGACAAGAAT	0.463													43	90					0	0	1	0	0
PABPC3	5042	broad.mit.edu	37	13	25670448	25670448	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25670448C>T	uc001upy.2	+	1	173	c.112C>T	c.(112-114)CTC>TTC	p.L38F		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	38	RRM 1.				mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		AGGGCCCATCCTCTCCATCCG	0.622													29	75					0	0	1	0	0
PABPC3	5042	broad.mit.edu	37	13	25671151	25671151	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25671151G>A	uc001upy.2	+	1	876	c.815G>A	c.(814-816)CGG>CAG	p.R272Q		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	272					mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		AAAGTGGAACGGCAGACGGAA	0.398													49	136					0	0	1	0	0
PABPC3	5042	broad.mit.edu	37	13	25671518	25671518	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25671518C>T	uc001upy.2	+	1	1243	c.1182C>T	c.(1180-1182)AAC>AAT	p.N394N		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	394					mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		CTGTGCCCAACCAGCGAGCAC	0.498													35	95					0	0	1	0	0
FAM123A	219287	broad.mit.edu	37	13	25744230	25744230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:25744230C>T	uc001uqb.2	-	1	1628	c.1528G>A	c.(1528-1530)GAG>AAG	p.E510K	FAM123A_uc001uqa.2_Missense_Mutation_p.E391K|FAM123A_uc001uqc.2_Missense_Mutation_p.E391K	NM_152704	NP_689917	Q8N7J2	F123A_HUMAN	hypothetical protein LOC219287 isoform 1	510										ovary(2)|large_intestine(1)|lung(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		TGCTCCTTCTCCGGGTGCTTG	0.652													24	86					0	0	1	0	0
ATP8A2	51761	broad.mit.edu	37	13	26112152	26112152	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:26112152C>T	uc001uqk.2	+	7	676	c.534C>T	c.(532-534)GTC>GTT	p.V178V	ATP8A2_uc010tdi.1_Silent_p.V138V|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc001uql.1_Silent_p.V138V	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	138	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		TTGTGAAGGTCGTCAATGGGC	0.448													17	55					0	0	1	0	0
ATP8A2	51761	broad.mit.edu	37	13	26128028	26128028	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:26128028G>A	uc001uqk.2	+	12	1297	c.1155G>A	c.(1153-1155)GTG>GTA	p.V385V	ATP8A2_uc010tdi.1_Silent_p.V345V|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc001uql.1_Silent_p.V345V	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	345	Helical; (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		TTGAGGTTGTGAAGTATACTC	0.383													42	90					0	0	1	0	0
ATP8A2	51761	broad.mit.edu	37	13	26163834	26163834	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:26163834G>A	uc001uqk.2	+	24	2350	c.2208G>A	c.(2206-2208)TTG>TTA	p.L736L	ATP8A2_uc010tdi.1_Silent_p.L696L|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Silent_p.L246L	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	696	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		AGGACTCTTTGGATGTAAGTA	0.363													30	90					0	0	1	0	0
ATP8A2	51761	broad.mit.edu	37	13	26273425	26273425	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:26273425G>A	uc001uqk.2	+	25	2468	c.2326G>A	c.(2326-2328)GAA>AAA	p.E776K	ATP8A2_uc010tdi.1_Missense_Mutation_p.E736K|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Missense_Mutation_p.E326K	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	736	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		GCTCTCCTTCGAAGTCCGGAG	0.542													8	46					0	0	1	0	0
RNF6	6049	broad.mit.edu	37	13	26789042	26789042	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:26789042G>A	uc001uqo.2	-	5	1268	c.977C>T	c.(976-978)TCC>TTC	p.S326F	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Missense_Mutation_p.S326F|RNF6_uc001uqp.2_Missense_Mutation_p.S326F|RNF6_uc001uqq.2_Missense_Mutation_p.S326F|RNF6_uc010tdk.1_Intron	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	326	Arg-rich.				negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		TTCCCTTTGGGAATTATGATA	0.413													53	114					0	0	1	0	0
RNF6	6049	broad.mit.edu	37	13	26789453	26789453	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:26789453G>A	uc001uqo.2	-	5	857	c.566C>T	c.(565-567)TCA>TTA	p.S189L	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Missense_Mutation_p.S189L|RNF6_uc001uqp.2_Missense_Mutation_p.S189L|RNF6_uc001uqq.2_Missense_Mutation_p.S189L|RNF6_uc010tdk.1_Intron	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	189					negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		AGGACTAGTTGACCTTTGTTG	0.403													18	275					0	0	1	0	0
CDK8	1024	broad.mit.edu	37	13	26974631	26974631	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:26974631C>T	uc001uqr.1	+	10	1001	c.975C>T	c.(973-975)ACC>ACT	p.T325T	CDK8_uc001uqs.1_Silent_p.T325T|CDK8_uc001uqt.1_Silent_p.T152T	NM_001260	NP_001251	P49336	CDK8_HUMAN	cyclin-dependent kinase 8	325	Protein kinase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|large_intestine(1)|ovary(1)|skin(1)	5	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0384)|Epithelial(112;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.188)		AGCGAATTACCTCAGAACAGG	0.423													17	204					0	0	1	0	0
WASF3	10810	broad.mit.edu	37	13	27256866	27256866	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:27256866C>T	uc001uqv.2	+	9	1331	c.1106C>T	c.(1105-1107)CCC>CTC	p.P369L	WASF3_uc001uqw.2_Missense_Mutation_p.P366L	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	369					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CCCATGCAGCCCCCGTTCCCT	0.662													8	126					0	0	1	0	0
RASL11A	387496	broad.mit.edu	37	13	27847178	27847178	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:27847178C>T	uc001urd.1	+	4	894	c.276C>T	c.(274-276)CTC>CTT	p.L92L		NM_206827	NP_996563	Q6T310	RSLBA_HUMAN	RAS-like, family 11, member A	92	Small GTPase-like.				positive regulation of transcription from RNA polymerase I promoter|small GTPase mediated signal transduction|transcription, DNA-dependent	membrane|nucleolus	GTP binding|GTPase activity			breast(1)	1		Lung SC(185;0.0161)	Colorectal(13;0.00042)|READ - Rectum adenocarcinoma(15;0.105)	all cancers(112;0.0173)|GBM - Glioblastoma multiforme(144;0.0557)|OV - Ovarian serous cystadenocarcinoma(117;0.152)|Epithelial(112;0.164)		AAGACAGCCTCCCCCAGGTCG	0.488													25	66					0	0	1	0	0
RASL11A	387496	broad.mit.edu	37	13	27847352	27847352	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:27847352C>T	uc001urd.1	+	4	1068	c.450C>T	c.(448-450)GAC>GAT	p.D150D		NM_206827	NP_996563	Q6T310	RSLBA_HUMAN	RAS-like, family 11, member A	150	Small GTPase-like.|GTP (By similarity).				positive regulation of transcription from RNA polymerase I promoter|small GTPase mediated signal transduction|transcription, DNA-dependent	membrane|nucleolus	GTP binding|GTPase activity			breast(1)	1		Lung SC(185;0.0161)	Colorectal(13;0.00042)|READ - Rectum adenocarcinoma(15;0.105)	all cancers(112;0.0173)|GBM - Glioblastoma multiforme(144;0.0557)|OV - Ovarian serous cystadenocarcinoma(117;0.152)|Epithelial(112;0.164)		ACAAGGGGGACCTTTTGCATG	0.532													19	42					0	0	1	0	0
LNX2	222484	broad.mit.edu	37	13	28127349	28127349	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28127349G>A	uc001url.3	-	8	2083	c.1774C>T	c.(1774-1776)CCC>TCC	p.P592S	LNX2_uc001urm.1_Missense_Mutation_p.P592S	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	592							zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		CAGTACCTGGGAAGCCCAAGC	0.473													9	86					0	0	1	0	0
LNX2	222484	broad.mit.edu	37	13	28136759	28136760	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28136759_28136760GG>AA	uc001url.3	-	5	1323_1324	c.1014_1015CC>TT	c.(1012-1017)TTCCAA>TTTTAA	p.Q339*	LNX2_uc001urm.1_Nonsense_Mutation_p.Q339*	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	339	PDZ 2.						zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		AGAGCCACTTGGAAAATCTCTT	0.485													31	92					0	0	1	0	0
LNX2	222484	broad.mit.edu	37	13	28136867	28136867	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28136867G>A	uc001url.3	-	5	1216	c.907C>T	c.(907-909)CTT>TTT	p.L303F	LNX2_uc001urm.1_Missense_Mutation_p.L303F	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	303	PDZ 1.						zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		GGCTGGGAAAGGACAGCTCGG	0.453													9	127					0	0	1	0	0
CDX2	1045	broad.mit.edu	37	13	28542661	28542661	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28542661C>T	uc001urv.2	-	1	657	c.483G>A	c.(481-483)CAG>CAA	p.Q161Q		NM_001265	NP_001256	Q99626	CDX2_HUMAN	caudal type homeobox 2	161					organ morphogenesis|transcription from RNA polymerase II promoter		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(110;0.191)|all_hematologic(3;0.0447)|Acute lymphoblastic leukemia(6;0.155)	Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0407)|all cancers(112;0.0491)|OV - Ovarian serous cystadenocarcinoma(117;0.199)		GGTTCCGCCGCTGGCCGCCGG	0.726			T	ETV6	AML								4	23					0	0	1	0	0
PRHOXNB	646625	broad.mit.edu	37	13	28562602	28562602	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28562602G>A	uc010aan.1	-	1	173	c.173C>T	c.(172-174)TCA>TTA	p.S58L		NM_001105577	NP_001099047	A6NGE7	URAD_HUMAN	parahox cluster neighbor	58					allantoin biosynthetic process|purine base metabolic process	peroxisome	carboxy-lyase activity				0	all_cancers(110;0.12)|all_hematologic(3;0.0119)|Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0161)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0407)|all cancers(112;0.0491)|OV - Ovarian serous cystadenocarcinoma(117;0.199)		AGCCTTACCTGACTGTGCAAG	0.353													18	45					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28592681	28592681	+	Missense_Mutation	SNP	C	T	T	rs148480385		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28592681C>T	uc001urw.2	-	20	2546	c.2464G>A	c.(2464-2466)GGG>AGG	p.G822R	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	822	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	ACCACTTTCCCGTGGGTGACA	0.463			Mis|O		AML|ALL								17	72					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28608057	28608057	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28608057C>T	uc001urw.2	-	15	1991	c.1909G>A	c.(1909-1911)GTC>ATC	p.V637I	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.V637I	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	637	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TGGATTGAGACTCCTGTTTTG	0.453			Mis|O		AML|ALL								22	260					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28610179	28610179	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28610179C>T	uc001urw.2	-	11	1393	c.1311G>A	c.(1309-1311)AGG>AGA	p.R437R	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.R437R	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	437	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	CTTGAGGTTTCCCTATAGAAA	0.313			Mis|O		AML|ALL								46	97					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28877480	28877480	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28877480C>T	uc001usb.3	-	30	4126	c.3841G>A	c.(3841-3843)GAG>AAG	p.E1281K	FLT1_uc010aap.2_Missense_Mutation_p.E286K|FLT1_uc010aaq.2_Missense_Mutation_p.E406K|FLT1_uc001usa.3_Missense_Mutation_p.E499K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1281	Cytoplasmic (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	AGCCCCGACTCCTTACTTTTA	0.443													18	39					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28883029	28883029	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28883029C>T	uc001usb.3	-	28	3956	c.3671G>A	c.(3670-3672)AGA>AAA	p.R1224K	FLT1_uc010aap.2_Missense_Mutation_p.R229K|FLT1_uc010aaq.2_Missense_Mutation_p.R349K|FLT1_uc001usa.3_Missense_Mutation_p.R442K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1224	Cytoplasmic (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GGTTTTGATTCTTTCCAGGCT	0.408													35	64					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28895627	28895627	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:28895627C>T	uc001usb.3	-	23	3432	c.3147G>A	c.(3145-3147)AAG>AAA	p.K1049K	FLT1_uc010aap.2_Silent_p.K54K|FLT1_uc010aaq.2_Silent_p.K174K|FLT1_uc001usa.3_Silent_p.K267K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1049	Cytoplasmic (Potential).|Protein kinase.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	AATCGGGGTTCTTATAAATAT	0.383													35	76					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	29002037	29002037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29002037C>T	uc001usb.3	-	9	1413	c.1128G>A	c.(1126-1128)GCG>GCA	p.A376A	FLT1_uc010aar.1_Silent_p.A376A|FLT1_uc001usc.3_Silent_p.A376A|FLT1_uc010tdp.1_Silent_p.A376A	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	376	Ig-like C2-type 4.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	ATTTCTCAGTCGCAGGTAACC	0.398													27	100					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	29005439	29005439	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29005439C>T	uc001usb.3	-	7	1107	c.822G>A	c.(820-822)AAG>AAA	p.K274K	FLT1_uc010aar.1_Silent_p.K274K|FLT1_uc001usc.3_Silent_p.K274K|FLT1_uc010tdp.1_Silent_p.K274K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	274	Extracellular (Potential).|Ig-like C2-type 3.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	CGGAAGCTCTCTTATTTTTCT	0.338													21	41					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	29007989	29007989	+	Silent	SNP	C	T	T	rs56405013	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29007989C>T	uc001usb.3	-	6	1065	c.780G>A	c.(778-780)ACG>ACA	p.T260T	FLT1_uc010aar.1_Silent_p.T260T|FLT1_uc001usc.3_Silent_p.T260T|FLT1_uc010tdp.1_Silent_p.T260T	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	260	Extracellular (Potential).|Ig-like C2-type 3.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TTTGAACTCTCGTGTTCAAGG	0.433													40	84					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	29008201	29008201	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29008201G>A	uc001usb.3	-	5	955	c.670C>T	c.(670-672)CGA>TGA	p.R224*	FLT1_uc010aar.1_Nonsense_Mutation_p.R224*|FLT1_uc001usc.3_Nonsense_Mutation_p.R224*|FLT1_uc010tdp.1_Nonsense_Mutation_p.R224*	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	224	Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TTACTTTGTCGATGTGTGAGA	0.353													24	77					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	29012409	29012409	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29012409G>A	uc001usb.3	-	4	747	c.462C>T	c.(460-462)CTC>CTT	p.L154L	FLT1_uc010aar.1_Silent_p.L154L|FLT1_uc001usc.3_Silent_p.L154L|FLT1_uc010tdp.1_Silent_p.L154L	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	154	Ig-like C2-type 2.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	AGGGAATGACGAGCTCCCTTC	0.388													41	20					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	29012441	29012441	+	Missense_Mutation	SNP	C	T	T	rs55974987	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29012441C>T	uc001usb.3	-	4	715	c.430G>A	c.(430-432)GAA>AAA	p.E144K	FLT1_uc010aar.1_Missense_Mutation_p.E144K|FLT1_uc001usc.3_Missense_Mutation_p.E144K|FLT1_uc010tdp.1_Missense_Mutation_p.E144K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	144	Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TGTATAATTTCGGGGATTTCA	0.383													9	43					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	29012450	29012450	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29012450C>T	uc001usb.3	-	4	706	c.421G>A	c.(421-423)GAA>AAA	p.E141K	FLT1_uc010aar.1_Missense_Mutation_p.E141K|FLT1_uc001usc.3_Missense_Mutation_p.E141K|FLT1_uc010tdp.1_Missense_Mutation_p.E141K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	141	Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TCGGGGATTTCACTGTACATC	0.373													15	42					0	0	1	0	0
SLC46A3	283537	broad.mit.edu	37	13	29278138	29278138	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29278138G>A	uc001usi.2	-	4	2213	c.1243C>T	c.(1243-1245)CCT>TCT	p.P415S	SLC46A3_uc001usg.2_Missense_Mutation_p.P340S|SLC46A3_uc001usj.2_Missense_Mutation_p.P415S|SLC46A3_uc001ush.2_Missense_Mutation_p.P415S	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	415	Extracellular (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		GTGAAGCCAGGGTACCAAGCA	0.408													17	51					0	0	1	0	0
SLC46A3	283537	broad.mit.edu	37	13	29284912	29284912	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29284912G>A	uc001usi.2	-	3	2099	c.1129C>T	c.(1129-1131)CGT>TGT	p.R377C	SLC46A3_uc001usg.2_Missense_Mutation_p.R302C|SLC46A3_uc001usj.2_Missense_Mutation_p.R377C|SLC46A3_uc001ush.2_Missense_Mutation_p.R377C|SLC46A3_uc001usk.2_3'UTR	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	377	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		TCAGTCGAACGAACCACTTTT	0.388													31	95					0	0	1	0	0
SLC46A3	283537	broad.mit.edu	37	13	29284944	29284944	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29284944G>A	uc001usi.2	-	3	2067	c.1097C>T	c.(1096-1098)TCT>TTT	p.S366F	SLC46A3_uc001usg.2_Missense_Mutation_p.S291F|SLC46A3_uc001usj.2_Missense_Mutation_p.S366F|SLC46A3_uc001ush.2_Missense_Mutation_p.S366F|SLC46A3_uc001usk.2_3'UTR	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	366	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		CCGTAGAACAGAGAATGGCAC	0.388													32	88					0	0	1	0	0
SLC46A3	283537	broad.mit.edu	37	13	29287358	29287358	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29287358G>A	uc001usi.2	-	2	1489	c.519C>T	c.(517-519)GAC>GAT	p.D173D	SLC46A3_uc001usg.2_Silent_p.D98D|SLC46A3_uc001usj.2_Silent_p.D173D|SLC46A3_uc001ush.2_Silent_p.D173D|SLC46A3_uc001usk.2_Silent_p.D98D	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	173	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		CAAGTAGAAAGTCAATGATAG	0.368													27	47					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29598859	29598859	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29598859G>A	uc001usl.3	+	1	112	c.54G>A	c.(52-54)AAG>AAA	p.K18K		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	8						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TGGCTCCTAAGAAATCATGTT	0.448													22	90					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29599756	29599756	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29599756G>A	uc001usl.3	+	1	1009	c.951G>A	c.(949-951)GAG>GAA	p.E317E		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	307						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GAAAGGGAGAGGCCAAGCTGG	0.502													17	28					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29599804	29599804	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29599804G>A	uc001usl.3	+	1	1057	c.999G>A	c.(997-999)GAG>GAA	p.E333E		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	323						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TTGAACAGGAGGGAAAGGCAG	0.532													13	37					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29599939	29599939	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29599939C>T	uc001usl.3	+	1	1192	c.1134C>T	c.(1132-1134)CTC>CTT	p.L378L		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	368						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						ACAGTGACCTCCACCACCTTG	0.572													9	31					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29600079	29600079	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29600079C>T	uc001usl.3	+	1	1332	c.1274C>T	c.(1273-1275)TCA>TTA	p.S425L		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	415						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GGCAAAATTTCACCATGTGCA	0.507													14	23					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29600269	29600269	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29600269G>A	uc001usl.3	+	1	1522	c.1464G>A	c.(1462-1464)GAG>GAA	p.E488E		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	478						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CTGTTGGAGAGAACAAGACGG	0.527													17	52					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29600728	29600728	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29600728C>T	uc001usl.3	+	1	1981	c.1923C>T	c.(1921-1923)CCC>CCT	p.P641P		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	631						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AAACTAAGCCCATCATTATGC	0.542													4	37					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29600924	29600924	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29600924G>A	uc001usl.3	+	1	2177	c.2119G>A	c.(2119-2121)GAG>AAG	p.E707K		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	697	Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CAACCTCTATGAGAAATTCAA	0.542													24	41					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29608128	29608128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:29608128G>A	uc001usl.3	+	2	2400	c.2342G>A	c.(2341-2343)GGA>GAA	p.G781E		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	771	Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CCCCAGCTAGGATTGGGTGCA	0.507													18	50					0	0	1	0	0
KATNAL1	84056	broad.mit.edu	37	13	30801654	30801654	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:30801654G>A	uc001uss.2	-	9	1143	c.1042C>T	c.(1042-1044)CCT>TCT	p.P348S	KATNAL1_uc001ust.2_Missense_Mutation_p.P348S	NM_001014380	NP_001014402	Q9BW62	KATL1_HUMAN	katanin p60 subunit A-like 1	348						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity				0		Lung SC(185;0.0257)		all cancers(112;0.114)|OV - Ovarian serous cystadenocarcinoma(117;0.213)		ATTTTGGAAGGATCATCATTT	0.338													10	82					0	0	1	0	0
KATNAL1	84056	broad.mit.edu	37	13	30854256	30854256	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:30854256T>A	uc001uss.2	-	3	368	c.267A>T	c.(265-267)CAA>CAT	p.Q89H	KATNAL1_uc001ust.2_Missense_Mutation_p.Q89H	NM_001014380	NP_001014402	Q9BW62	KATL1_HUMAN	katanin p60 subunit A-like 1	89						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity				0		Lung SC(185;0.0257)		all cancers(112;0.114)|OV - Ovarian serous cystadenocarcinoma(117;0.213)		ATGGTTCATCTTGACAGGACA	0.393													15	33					0	0	1	0	0
USPL1	10208	broad.mit.edu	37	13	31232685	31232685	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:31232685C>T	uc001utc.2	+	9	2903	c.2471C>T	c.(2470-2472)CCC>CTC	p.P824L	USPL1_uc001utd.2_Missense_Mutation_p.P495L|USPL1_uc001ute.1_Missense_Mutation_p.P495L	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	824					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		AAGCCTCCTCCCATCAGTAAG	0.483													30	79					0	0	1	0	0
ALOX5AP	241	broad.mit.edu	37	13	31309784	31309784	+	Silent	SNP	C	T	T	rs11542984	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:31309784C>T	uc001utf.1	+	1	116	c.42C>T	c.(40-42)ATC>ATT	p.I14I	ALOX5AP_uc010tdr.1_Silent_p.I71I	NM_001629	NP_001620	P20292	AL5AP_HUMAN	arachidonate 5-lipoxygenase-activating protein	14	Helical.				cellular response to calcium ion|leukotriene biosynthetic process|leukotriene production involved in inflammatory response|protein homotrimerization	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	arachidonic acid binding|protein N-terminus binding				0		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0187)|Epithelial(112;0.0803)|OV - Ovarian serous cystadenocarcinoma(117;0.0864)		TGTTGGCCATCGTCACCCTCA	0.517													15	38					0	0	1	0	0
ALOX5AP	241	broad.mit.edu	37	13	31318223	31318223	+	Missense_Mutation	SNP	G	A	A	rs146973182		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:31318223G>A	uc001utf.1	+	2	171	c.97G>A	c.(97-99)GAA>AAA	p.E33K	ALOX5AP_uc010tdr.1_Missense_Mutation_p.E90K	NM_001629	NP_001620	P20292	AL5AP_HUMAN	arachidonate 5-lipoxygenase-activating protein	33	Cytoplasmic.				cellular response to calcium ion|leukotriene biosynthetic process|leukotriene production involved in inflammatory response|protein homotrimerization	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	arachidonic acid binding|protein N-terminus binding				0		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0187)|Epithelial(112;0.0803)|OV - Ovarian serous cystadenocarcinoma(117;0.0864)		AGTGGAGCACGAAAGCAGGAC	0.498													7	56					0	0	1	0	0
ALOX5AP	241	broad.mit.edu	37	13	31318246	31318246	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:31318246G>A	uc001utf.1	+	2	194	c.120G>A	c.(118-120)AGG>AGA	p.R40R	ALOX5AP_uc010tdr.1_Silent_p.R97R	NM_001629	NP_001620	P20292	AL5AP_HUMAN	arachidonate 5-lipoxygenase-activating protein	40	Cytoplasmic.				cellular response to calcium ion|leukotriene biosynthetic process|leukotriene production involved in inflammatory response|protein homotrimerization	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	arachidonic acid binding|protein N-terminus binding				0		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0187)|Epithelial(112;0.0803)|OV - Ovarian serous cystadenocarcinoma(117;0.0864)		AGAATGGGAGGAGCTTCCAGA	0.542													10	51					0	0	1	0	0
C13orf33	84935	broad.mit.edu	37	13	31495738	31495738	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:31495738G>A	uc001uth.3	+	4	883	c.542G>A	c.(541-543)GGA>GAA	p.G181E	uc001utg.1_Intron	NM_032849	NP_116238	Q5VYS4	CM033_HUMAN	hypothetical protein LOC84935	181											0		Lung SC(185;0.0281)		all cancers(112;0.00914)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.0559)|GBM - Glioblastoma multiforme(144;0.244)		TTCCCCCCAGGAAATGAAGTG	0.358													33	77					0	0	1	0	0
C13orf26	122046	broad.mit.edu	37	13	31531050	31531050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:31531050G>A	uc001uti.2	+	4	372	c.353G>A	c.(352-354)GGG>GAG	p.G118E		NM_152325	NP_689538	Q8N6G2	CM026_HUMAN	hypothetical protein LOC122046	118										ovary(2)|skin(1)	3		Lung SC(185;0.0281)		all cancers(112;0.0176)|Epithelial(112;0.0768)|OV - Ovarian serous cystadenocarcinoma(117;0.0852)		CAACAAACGGGGACACTAAAG	0.388													27	85					0	0	1	0	0
B3GALTL	145173	broad.mit.edu	37	13	31835147	31835147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:31835147C>T	uc010aaz.2	+	7	634	c.524C>T	c.(523-525)TCC>TTC	p.S175F	B3GALTL_uc001utn.3_RNA	NM_194318	NP_919299	Q6Y288	B3GLT_HUMAN	beta 1,3-galactosyltransferase-like	175	Lumenal (Potential).				fucose metabolic process	endoplasmic reticulum membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2		Lung SC(185;0.0257)		all cancers(112;0.00436)|Epithelial(112;0.0285)|OV - Ovarian serous cystadenocarcinoma(117;0.0512)|GBM - Glioblastoma multiforme(144;0.184)		TATGCCTTTTCCGAGAATCCT	0.343													14	58					0	0	1	0	0
RXFP2	122042	broad.mit.edu	37	13	32332505	32332505	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32332505G>A	uc001utt.2	+	2	276	c.205G>A	c.(205-207)GAT>AAT	p.D69N	RXFP2_uc010aba.2_Missense_Mutation_p.D52N	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	69	Extracellular (Potential).|LDL-receptor class A.					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TGATGGCAAGGATGACTGTGG	0.522													46	129					0	0	1	0	0
RXFP2	122042	broad.mit.edu	37	13	32376538	32376538	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32376538C>T	uc001utt.2	+	18	2332	c.2261C>T	c.(2260-2262)TCC>TTC	p.S754F	RXFP2_uc010aba.2_Missense_Mutation_p.S713F	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	754	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		AAACCAGTTTCCTAGCAATCA	0.403													88	204					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32698944	32698944	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32698944C>T	uc001utx.2	+	7	1144	c.648C>T	c.(646-648)CCC>CCT	p.P216P	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	216					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		ACCTTGGTCCCAACACTGGCA	0.428													14	149					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32705812	32705812	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32705812C>T	uc001utx.2	+	8	1216	c.720C>T	c.(718-720)TTC>TTT	p.F240F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	240					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TTCTTAGATTCCCTGCTGTAA	0.418													10	47					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32752402	32752402	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32752402G>A	uc001utx.2	+	21	3006	c.2510G>A	c.(2509-2511)AGC>AAC	p.S837N	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	837					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GATGTGAAAAGCCCTTCCCAT	0.512													13	131					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32752500	32752501	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32752500_32752501CC>TT	uc001utx.2	+	21	3104_3105	c.2608_2609CC>TT	c.(2608-2610)CCC>TTC	p.P870F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	870					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CAAGCACTGCCCCACAGCCCTC	0.559													47	137					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32792919	32792919	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32792919C>T	uc001utx.2	+	36	5212	c.4716C>T	c.(4714-4716)CTC>CTT	p.L1572L	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1572					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		ACACTCGCCTCGAGTCAAGAT	0.413													11	47					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32800019	32800019	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32800019C>T	uc001utx.2	+	39	5610	c.5114C>T	c.(5113-5115)TCC>TTC	p.S1705F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1705	Helical; (Potential).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		AATTTCCATTCCATTGCTTCC	0.483													47	90					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32810233	32810233	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32810233C>T	uc001utx.2	+	43	6230	c.5734C>T	c.(5734-5736)CTC>TTC	p.L1912F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1912					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		AATGGAAGCGCTCCTAACCTT	0.388													12	50					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32811801	32811801	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32811801C>T	uc001utx.2	+	44	6592	c.6096C>T	c.(6094-6096)TCC>TCT	p.S2032S	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2032					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CGGACCCATCCCACATAAACC	0.498													7	27					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32812098	32812098	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32812098C>T	uc001utx.2	+	44	6889	c.6393C>T	c.(6391-6393)TCC>TCT	p.S2131S	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CCAAAATATCCATGGTGGATG	0.498													22	96					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32813968	32813968	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32813968C>T	uc001utx.2	+	46	7133	c.6637C>T	c.(6637-6639)CAT>TAT	p.H2213Y	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2213					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TCGATACCTTCATGAAGCATA	0.358													15	68					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32818262	32818262	+	Silent	SNP	C	T	T	rs146000974	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32818262C>T	uc001utx.2	+	47	7267	c.6771C>T	c.(6769-6771)GTC>GTT	p.V2257V	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2257					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		ACCTTTCTGTCGTTCCTGTCA	0.478													34	114					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32821520	32821520	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32821520C>T	uc001utx.2	+	48	7385	c.6889C>T	c.(6889-6891)CTT>TTT	p.L2297F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2297					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GTCAGCCAGCCTTGTTTTACC	0.408													36	100					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32868615	32868615	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32868615C>T	uc001utx.2	+	60	9187	c.8691C>T	c.(8689-8691)ACC>ACT	p.T2897T	FRY_uc010tdw.1_RNA|FRY_uc001utz.2_Silent_p.T428T|FRY_uc010tdx.1_Silent_p.T267T	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2897					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CCGAGCCCACCTTCACGTCCA	0.557													24	74					0	0	1	0	0
BRCA2	675	broad.mit.edu	37	13	32907432	32907432	+	Missense_Mutation	SNP	C	T	T	rs80358469		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32907432C>T	uc001uub.1	+	10	2044	c.1817C>T	c.(1816-1818)CCG>CTG	p.P606L	BRCA2_uc001uua.1_Missense_Mutation_p.P483L	NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	606					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AAAAAAATACCGAAAGACCAA	0.318			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			18	57					0	0	1	0	0
BRCA2	675	broad.mit.edu	37	13	32913745	32913745	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32913745C>T	uc001uub.1	+	11	5480	c.5253C>T	c.(5251-5253)TAC>TAT	p.Y1751Y		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	1751					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		GCTATTCCTACCATTCTGATG	0.303			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			25	53					0	0	1	0	0
BRCA2	675	broad.mit.edu	37	13	32972621	32972621	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:32972621C>T	uc001uub.1	+	27	10198	c.9971C>T	c.(9970-9972)CCA>CTA	p.P3324L		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	3324					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		CAGATGACTCCATTTAAAAAA	0.383			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			21	53					0	0	1	0	0
N4BP2L2	10443	broad.mit.edu	37	13	33016598	33016598	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33016598G>A	uc010abe.1	-	7	2098	c.2076C>T	c.(2074-2076)TCC>TCT	p.S692S	N4BP2L2_uc001uug.2_Silent_p.S575S|N4BP2L2_uc010abd.1_Silent_p.S605S|N4BP2L2_uc001uuh.2_Silent_p.S523S|N4BP2L2_uc001uuj.2_Silent_p.S111S|N4BP2L2_uc010tdz.1_Silent_p.S677S	NM_033111	NP_149102	Q92802	N42L2_HUMAN	phosphonoformate immuno-associated protein 5	Error:Variant_position_missing_in_Q92802_after_alignment											0		Lung SC(185;0.0262)		all cancers(112;9.5e-07)|Epithelial(112;5.07e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00196)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.243)		GTAGCTCAAGGGAACGGTAGT	0.393													7	22					0	0	1	0	0
PDS5B	23047	broad.mit.edu	37	13	33327494	33327494	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33327494G>A	uc010abf.2	+	25	2919	c.2761G>A	c.(2761-2763)GTG>ATG	p.V921M	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	921					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		AGTAAGACAAGTGTTTGCCCA	0.383													38	98					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33590868	33590868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33590868C>T	uc001uus.2	+	1	298	c.290C>T	c.(289-291)CCC>CTC	p.P97L	KL_uc001uur.1_Intron	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	97	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		ACCCACCACCCCCTGGCACCC	0.721													5	17					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33591242	33591242	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33591242C>T	uc001uus.2	+	1	672	c.664C>T	c.(664-666)CTC>TTC	p.L222F	KL_uc001uur.1_Intron	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	222	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		TTACGCGGAGCTCTGCTTCCG	0.692													4	32					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33628011	33628011	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33628011C>T	uc001uus.2	+	2	935	c.927C>T	c.(925-927)ACC>ACT	p.T309T	KL_uc001uur.1_Silent_p.T2T	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	309	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		GAAGAATGACCGACCACAGCA	0.463													56	183					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33635089	33635089	+	Missense_Mutation	SNP	G	A	A	rs150287359		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33635089G>A	uc001uus.2	+	4	1881	c.1873G>A	c.(1873-1875)GAG>AAG	p.E625K	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	625	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CATGGCCAGCGAGCTTGTCCG	0.627													13	85					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33635294	33635294	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33635294G>A	uc001uus.2	+	4	2086	c.2078G>A	c.(2077-2079)AGG>AAG	p.R693K	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	693	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CCGTATACAAGGAATATGACA	0.493													6	60					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33635402	33635402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33635402C>T	uc001uus.2	+	4	2194	c.2186C>T	c.(2185-2187)GCC>GTC	p.A729V	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	729	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		ATATCCATAGCCTTGCAGGCT	0.493													6	62					0	0	1	0	0
STARD13	90627	broad.mit.edu	37	13	33700343	33700343	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33700343G>A	uc001uuw.2	-	7	2083	c.1957C>T	c.(1957-1959)CCC>TCC	p.P653S	STARD13_uc001uuu.2_Missense_Mutation_p.P645S|STARD13_uc001uuv.2_Missense_Mutation_p.P535S|STARD13_uc001uux.2_Missense_Mutation_p.P618S|STARD13_uc010tec.1_RNA	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	653					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		TTGTAGTCGGGAACTTTCATC	0.498													61	162					0	0	1	0	0
STARD13	90627	broad.mit.edu	37	13	33703274	33703274	+	Missense_Mutation	SNP	G	A	A	rs143961677	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33703274G>A	uc001uuw.2	-	5	1666	c.1540C>T	c.(1540-1542)CAT>TAT	p.H514Y	STARD13_uc001uuu.2_Missense_Mutation_p.H506Y|STARD13_uc001uuv.2_Missense_Mutation_p.H396Y|STARD13_uc001uux.2_Missense_Mutation_p.H479Y|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.H499Y	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	514					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		AATGTATCATGAGTTTGCAGT	0.468													27	74					0	0	1	0	0
STARD13	90627	broad.mit.edu	37	13	33703677	33703677	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33703677C>T	uc001uuw.2	-	5	1263	c.1137G>A	c.(1135-1137)GGG>GGA	p.G379G	STARD13_uc001uuu.2_Silent_p.G371G|STARD13_uc001uuv.2_Silent_p.G261G|STARD13_uc001uux.2_Silent_p.G344G|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Silent_p.G364G	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	379					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		GGCTTTGGTCCCCTGCATCCG	0.547													22	104					0	0	1	0	0
STARD13	90627	broad.mit.edu	37	13	33704144	33704144	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:33704144C>T	uc001uuw.2	-	5	796	c.670G>A	c.(670-672)GAT>AAT	p.D224N	STARD13_uc001uuu.2_Missense_Mutation_p.D216N|STARD13_uc001uuv.2_Missense_Mutation_p.D106N|STARD13_uc001uux.2_Missense_Mutation_p.D189N|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.D209N	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	224					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		AGTGGGGCATCCAGCATGACC	0.632													18	36					0	0	1	0	0
RFC3	5983	broad.mit.edu	37	13	34409298	34409298	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:34409298C>T	uc001uuz.2	+	8	933	c.823C>T	c.(823-825)CGT>TGT	p.R275C	RFC3_uc001uva.2_Missense_Mutation_p.R275C|RFC3_uc010ted.1_Missense_Mutation_p.R275C	NM_002915	NP_002906	P40938	RFC3_HUMAN	replication factor C 3 isoform 1	275					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|response to organophosphorus|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding				0		Hepatocellular(188;0.0191)|Lung SC(185;0.0548)		all cancers(112;5.09e-06)|Epithelial(112;6.52e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00107)|OV - Ovarian serous cystadenocarcinoma(117;0.0285)|GBM - Glioblastoma multiforme(144;0.123)		CCTTGAAGTTCGTGGAAGGCT	0.313													13	76					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35619167	35619167	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:35619167G>A	uc001uvb.2	+	4	816	c.610G>A	c.(610-612)GGA>AGA	p.G204R		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	204						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CATGCTTCGAGGAGAAAGTGG	0.403													6	21					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35644168	35644168	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:35644168C>T	uc001uvb.2	+	10	1569	c.1363C>T	c.(1363-1365)CAG>TAG	p.Q455*		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	455						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CACTGATGCTCAGCTCTGCCT	0.413													14	20					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35716442	35716442	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:35716442C>T	uc001uvb.2	+	19	2579	c.2373C>T	c.(2371-2373)TTC>TTT	p.F791F		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	791						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ATAGTCTTTTCACTCTTCTTG	0.368													25	97					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35756549	35756549	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:35756549C>T	uc001uvb.2	+	29	4921	c.4715C>T	c.(4714-4716)TCG>TTG	p.S1572L	NBEA_uc010abi.2_Missense_Mutation_p.S260L	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1572						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TACTTCATTTCGGTTCTGATG	0.373													29	98					0	0	1	0	0
MAB21L1	4081	broad.mit.edu	37	13	36049679	36049679	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:36049679C>T	uc001uvc.2	-	1	1154	c.597G>A	c.(595-597)CGG>CGA	p.R199R	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	199					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		CCTCCGCCACCCGGTTGGGTC	0.652													16	73					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	36129141	36129141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:36129141C>T	uc001uvb.2	+	44	7030	c.6824C>T	c.(6823-6825)ACT>ATT	p.T2275I	NBEA_uc010abi.2_Missense_Mutation_p.T931I|NBEA_uc010tee.1_Missense_Mutation_p.T68I|NBEA_uc010tef.1_Missense_Mutation_p.T68I|NBEA_uc010teg.1_Missense_Mutation_p.T68I	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2275	BEACH.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TCATTGGCCACTCCTCGACAG	0.328													11	21					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	36241637	36241637	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:36241637G>A	uc001uvb.2	+	56	8734	c.8528G>A	c.(8527-8529)CGA>CAA	p.R2843Q	NBEA_uc010abi.2_Missense_Mutation_p.R1501Q|NBEA_uc010tef.1_Missense_Mutation_p.R636Q|NBEA_uc001uvd.2_Missense_Mutation_p.R421Q	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2843						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TACTATGAACGAGGGCGATTC	0.433													58	159					0	0	1	0	0
DCLK1	9201	broad.mit.edu	37	13	36348818	36348818	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:36348818C>T	uc001uvf.2	-	18	2384	c.2151G>A	c.(2149-2151)AGG>AGA	p.R717R	DCLK1_uc001uve.3_Silent_p.R410R|DCLK1_uc010teh.1_Missense_Mutation_p.E386K|DCLK1_uc010abk.2_Silent_p.R237R	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	Error:Variant_position_missing_in_O15075_after_alignment					cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		ACCTGCCTCTCCTTATCAAGA	0.512													3	10					0	0	1	0	0
DCLK1	9201	broad.mit.edu	37	13	36402445	36402445	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:36402445C>T	uc001uvf.2	-	9	1463	c.1230_splice	c.e9-1	p.R410_splice	DCLK1_uc001uve.3_Splice_Site_p.R103_splice|DCLK1_uc010teh.1_Splice_Site_p.R103_splice|DCLK1_uc010abk.2_Intron	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1						cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		AGCAGTCGATCTGCGAAGAGA	0.323													15	29					0	0	1	0	0
SOHLH2	54937	broad.mit.edu	37	13	36776042	36776042	+	Silent	SNP	C	T	T	rs144247429		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:36776042C>T	uc001uvj.2	-	2	326	c.237G>A	c.(235-237)GAG>GAA	p.E79E	SOHLH2_uc010tei.1_Silent_p.E156E	NM_017826	NP_060296	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic	79					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;4.63e-08)|Epithelial(112;2.67e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00272)|BRCA - Breast invasive adenocarcinoma(63;0.00685)|GBM - Glioblastoma multiforme(144;0.0273)		CTTCCAGCTCCTCGGCACTTA	0.393													28	69					0	0	1	0	0
SOHLH2	54937	broad.mit.edu	37	13	36788653	36788653	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:36788653G>A	uc001uvj.2	-	1	100	c.11C>T	c.(10-12)TCA>TTA	p.S4L	SOHLH2_uc010tei.1_Intron	NM_017826	NP_060296	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic	4					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;4.63e-08)|Epithelial(112;2.67e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00272)|BRCA - Breast invasive adenocarcinoma(63;0.00685)|GBM - Glioblastoma multiforme(144;0.0273)		GCAGATAATTGAGGAAGCCAT	0.667													11	19					0	0	1	0	0
CCNA1	8900	broad.mit.edu	37	13	37007241	37007241	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:37007241C>T	uc001uvr.3	+	2	530	c.180C>T	c.(178-180)GCC>GCT	p.A60A	CCNA1_uc010teo.1_Silent_p.A16A|CCNA1_uc010abq.2_Silent_p.A16A|CCNA1_uc010abp.2_Silent_p.A16A|CCNA1_uc001uvs.3_Silent_p.A59A|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	60					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		CTACAGTGGCCCGAGGTCCCG	0.587													13	85					0	0	1	0	0
SMAD9	4093	broad.mit.edu	37	13	37453613	37453613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:37453613G>A	uc001uvw.2	-	2	557	c.214C>T	c.(214-216)CCC>TCC	p.P72S	SMAD9_uc001uvx.2_Missense_Mutation_p.P72S|SMAD9_uc010tep.1_5'UTR	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	72	MH1.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		AGGGAGCGGGGAATCGTGACG	0.627													14	64					0	0	1	0	0
CSNK1A1L	122011	broad.mit.edu	37	13	37679361	37679361	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:37679361G>A	uc001uwm.1	-	1	441	c.33C>T	c.(31-33)CTC>CTT	p.L11L		NM_145203	NP_660204	Q8N752	KC1AL_HUMAN	casein kinase 1, alpha 1-like	11					Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)	1		Lung NSC(96;7.97e-05)|Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.109)		all cancers(112;3.58e-07)|Epithelial(112;1.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00695)|BRCA - Breast invasive adenocarcinoma(63;0.0117)|GBM - Glioblastoma multiforme(144;0.0407)		CTCCCACAACGAGTTCGGCTT	0.592													41	92					0	0	1	0	0
POSTN	10631	broad.mit.edu	37	13	38137471	38137471	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:38137471C>T	uc001uwo.3	-	23	2628	c.2510G>A	c.(2509-2511)TGA>TAA	p.*837*	POSTN_uc010tet.1_Silent_p.*338*|POSTN_uc001uwp.3_Silent_p.*780*|POSTN_uc001uwr.2_Silent_p.*782*|POSTN_uc001uwq.2_Silent_p.*752*	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	837					cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TTTGGATTTTCACTGAGAACG	0.318													21	41					0	0	1	0	0
POSTN	10631	broad.mit.edu	37	13	38144728	38144728	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:38144728C>T	uc001uwo.3	-	19	2376	c.2258G>A	c.(2257-2259)CGA>CAA	p.R753Q	POSTN_uc010tet.1_Missense_Mutation_p.R254Q|POSTN_uc001uwp.3_Missense_Mutation_p.R696Q|POSTN_uc001uwr.2_Missense_Mutation_p.R726Q|POSTN_uc001uwq.2_Missense_Mutation_p.R696Q|POSTN_uc010teu.1_Missense_Mutation_p.R726Q|POSTN_uc010tev.1_Intron|POSTN_uc010tew.1_Intron	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	753					cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TGTAATGATTCGTTCTTCTCG	0.318													17	88					0	0	1	0	0
POSTN	10631	broad.mit.edu	37	13	38156645	38156645	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:38156645G>A	uc001uwo.3	-	10	1368	c.1250C>T	c.(1249-1251)ACT>ATT	p.T417I	POSTN_uc010tet.1_5'Flank|POSTN_uc001uwp.3_Missense_Mutation_p.T417I|POSTN_uc001uwr.2_Missense_Mutation_p.T417I|POSTN_uc001uwq.2_Missense_Mutation_p.T417I|POSTN_uc010teu.1_Missense_Mutation_p.T417I|POSTN_uc010tev.1_Missense_Mutation_p.T417I|POSTN_uc010tew.1_Missense_Mutation_p.T417I|POSTN_uc010tex.1_Missense_Mutation_p.T332I	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	417	FAS1 3.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		CATGCTGAGAGTATCATCTGT	0.333													15	52					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38211624	38211624	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:38211624C>T	uc001uws.2	-	11	2585	c.2350G>A	c.(2350-2352)GAA>AAA	p.E784K	TRPC4_uc010abv.2_Missense_Mutation_p.E364K|TRPC4_uc001uwt.2_Missense_Mutation_p.E784K|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.E611K|TRPC4_uc010abx.2_Missense_Mutation_p.E789K|TRPC4_uc010aby.2_Missense_Mutation_p.E719K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	784	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CTATTACCTTCGCTATCACTC	0.413													39	92					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38211639	38211639	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:38211639C>T	uc001uws.2	-	11	2570	c.2335G>A	c.(2335-2337)GAA>AAA	p.E779K	TRPC4_uc010abv.2_Missense_Mutation_p.E359K|TRPC4_uc001uwt.2_Missense_Mutation_p.E779K|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.E606K|TRPC4_uc010abx.2_Missense_Mutation_p.E784K|TRPC4_uc010aby.2_Missense_Mutation_p.E714K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	779	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TCACTCTTTTCATCTGAGTCT	0.423													31	100					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38211735	38211735	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:38211735G>A	uc001uws.2	-	11	2474	c.2239C>T	c.(2239-2241)CGC>TGC	p.R747C	TRPC4_uc010abv.2_Missense_Mutation_p.R327C|TRPC4_uc001uwt.2_Missense_Mutation_p.R747C|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.R574C|TRPC4_uc010abx.2_Missense_Mutation_p.R752C|TRPC4_uc010aby.2_Missense_Mutation_p.R682C	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	747	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		ACTTCAAAGCGGAAACTAGAA	0.363													20	64					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38237609	38237609	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:38237609C>T	uc001uws.2	-	6	1867	c.1632G>A	c.(1630-1632)ACG>ACA	p.T544T	TRPC4_uc010abv.2_Silent_p.T124T|TRPC4_uc001uwt.2_Silent_p.T544T|TRPC4_uc010tey.1_Silent_p.T544T|TRPC4_uc010abw.2_Silent_p.T371T|TRPC4_uc010abx.2_Silent_p.T544T|TRPC4_uc010aby.2_Silent_p.T544T	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	544	Extracellular (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TTAACCCTTTCGTTTCTTCAT	0.348													23	62					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38237701	38237701	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:38237701G>A	uc001uws.2	-	6	1775	c.1540C>T	c.(1540-1542)CTG>TTG	p.L514L	TRPC4_uc010abv.2_Silent_p.L94L|TRPC4_uc001uwt.2_Silent_p.L514L|TRPC4_uc010tey.1_Silent_p.L514L|TRPC4_uc010abw.2_Silent_p.L341L|TRPC4_uc010abx.2_Silent_p.L514L|TRPC4_uc010aby.2_Silent_p.L514L	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	514	Helical; (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		AAAATGTCCAGGAGCATTCTT	0.388													23	63					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38357230	38357230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:38357230C>T	uc001uws.2	-	2	476	c.241G>A	c.(241-243)GAG>AAG	p.E81K	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.E81K|TRPC4_uc010tey.1_Missense_Mutation_p.E81K|TRPC4_uc010abw.2_Missense_Mutation_p.E81K|TRPC4_uc010abx.2_Missense_Mutation_p.E81K|TRPC4_uc010aby.2_Missense_Mutation_p.E81K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	81	ANK 2.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		tccaagttctcattttcaatt	0.219													33	71					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39263334	39263334	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39263334C>T	uc001uwv.2	+	1	2162	c.1853C>T	c.(1852-1854)CCC>CTC	p.P618L		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	618	CSPG 3.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ACTCACCCTCCCCATGAGAAG	0.522													5	78					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39263555	39263555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39263555C>T	uc001uwv.2	+	1	2383	c.2074C>T	c.(2074-2076)CGT>TGT	p.R692C		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	692	CSPG 4.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GTTTGTGATTCGTATCCATCC	0.562													32	104					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39263760	39263760	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39263760C>T	uc001uwv.2	+	1	2588	c.2279C>T	c.(2278-2280)ACC>ATC	p.T760I		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	760	CSPG 4.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CCACTGGGTACCTTGGTCTTG	0.527													21	69					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39265290	39265290	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39265290C>T	uc001uwv.2	+	1	4118	c.3809C>T	c.(3808-3810)TCC>TTC	p.S1270F		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1270	CSPG 8.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CATGATGACTCCGAGACCCAG	0.428													110	250					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39265901	39265901	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39265901C>T	uc001uwv.2	+	1	4729	c.4420C>T	c.(4420-4422)CAG>TAG	p.Q1474*		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1474	Extracellular (Potential).|CSPG 10.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ATGCACGGATCAGCCTGGTGT	0.468													21	62					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39358846	39358846	+	Missense_Mutation	SNP	G	A	A	rs121434355		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39358846G>A	uc001uwv.2	+	6	6229	c.5920G>A	c.(5920-5922)GAG>AAG	p.E1974K	FREM2_uc001uww.2_Missense_Mutation_p.E60K	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1974	Extracellular (Potential).|Calx-beta 2.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GTACGAGGAGGAGGAAACCTT	0.498													35	59					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39425938	39425938	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39425938C>T	uc001uwv.2	+	11	7167	c.6858C>T	c.(6856-6858)TCC>TCT	p.S2286S	FREM2_uc001uww.2_Silent_p.S372S	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2286	Extracellular (Potential).|Calx-beta 5.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CAAAGGTTTCCATTGTGAGAG	0.507													22	62					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39425979	39425979	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39425979G>A	uc001uwv.2	+	11	7208	c.6899G>A	c.(6898-6900)GGA>GAA	p.G2300E	FREM2_uc001uww.2_Missense_Mutation_p.G386E	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2300	Extracellular (Potential).|Calx-beta 5.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GCCACCTCTGGAGAAGACTAC	0.527													17	43					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39432079	39432079	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39432079C>T	uc001uwv.2	+	13	7433	c.7124C>T	c.(7123-7125)CCT>CTT	p.P2375L	FREM2_uc001uww.2_Missense_Mutation_p.P461L	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2375	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding	p.P2375S(1)		ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CCTTCTGTCCCTCAAATTGTA	0.428													30	131					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39447062	39447062	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39447062G>A	uc001uwv.2	+	17	8476	c.8167G>A	c.(8167-8169)GAA>AAA	p.E2723K		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2723	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CCCAGAGGCTGAACTTCAAGG	0.403													18	57					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39452309	39452309	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39452309C>T	uc001uwv.2	+	22	9019	c.8710C>T	c.(8710-8712)CAG>TAG	p.Q2904*		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2904	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GGATCCTGTCCAGAATCTGGG	0.398													36	135					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39454590	39454590	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39454590C>T	uc001uwv.2	+	24	9485	c.9176C>T	c.(9175-9177)CCC>CTC	p.P3059L		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	3059	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		AGGAGCACACCCTCACTGGCA	0.537													15	92					0	0	1	0	0
STOML3	161003	broad.mit.edu	37	13	39542580	39542580	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39542580G>A	uc001uwx.2	-	6	746	c.608C>T	c.(607-609)TCC>TTC	p.S203F	STOML3_uc010tez.1_Missense_Mutation_p.S194F	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	203	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		GGCTGCCATGGATCTCTGCAA	0.557													40	103					0	0	1	0	0
C13orf23	80209	broad.mit.edu	37	13	39597240	39597240	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39597240G>A	uc001uwy.2	-	8	1465	c.592C>T	c.(592-594)CCT>TCT	p.P198S	C13orf23_uc001uwz.2_Missense_Mutation_p.P176S	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	198	Pro-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		TAAGGAACAGGTTTATGTGGA	0.378													16	136					0	0	1	0	0
C13orf23	80209	broad.mit.edu	37	13	39602432	39602432	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:39602432G>A	uc001uwy.2	-	5	1174	c.301C>T	c.(301-303)CGT>TGT	p.R101C	C13orf23_uc001uwz.2_Missense_Mutation_p.R79C	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	101										ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		TCAATAGGACGAGAATTCTGT	0.338													12	24					0	0	1	0	0
COG6	57511	broad.mit.edu	37	13	40239278	40239278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:40239278C>T	uc001uxh.2	+	4	515	c.415C>T	c.(415-417)CTT>TTT	p.L139F	COG6_uc001uxi.2_Missense_Mutation_p.L87F|COG6_uc010acb.2_Missense_Mutation_p.L139F	NM_020751	NP_065802	Q9Y2V7	COG6_HUMAN	component of oligomeric golgi complex 6 isoform	139					protein transport	Golgi membrane|Golgi transport complex				kidney(1)|skin(1)	2		Lung NSC(96;0.000124)|Breast(139;0.0199)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.03e-09)|Epithelial(112;7e-07)|OV - Ovarian serous cystadenocarcinoma(117;0.00015)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.0168)		AACCACTAAGCTTCAATCTGA	0.259													27	71					0	0	1	0	0
FOXO1	2308	broad.mit.edu	37	13	41134284	41134284	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:41134284A>C	uc001uxl.3	-	2	1729	c.1344T>G	c.(1342-1344)AGT>AGG	p.S448R	FOXO1_uc010acc.1_Missense_Mutation_p.S263R	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	448					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		TACCTCCATAACTCGACTTAT	0.453													26	51					0	0	1	0	0
MRPS31	10240	broad.mit.edu	37	13	41331094	41331094	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:41331094G>A	uc001uxm.3	-	4	730	c.655C>T	c.(655-657)CGT>TGT	p.R219C		NM_005830	NP_005821	Q92665	RT31_HUMAN	mitochondrial ribosomal protein S31 precursor	219						mitochondrion|ribosome	protein domain specific binding				0		Lung NSC(96;3.55e-06)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;1.52e-08)|Epithelial(112;7.63e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000192)|GBM - Glioblastoma multiforme(144;0.00233)|BRCA - Breast invasive adenocarcinoma(63;0.0706)		GGTCTTGAACGAACTCTAGCT	0.373													26	77					0	0	1	0	0
SLC25A15	10166	broad.mit.edu	37	13	41379284	41379284	+	Silent	SNP	C	T	T	rs35434090	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:41379284C>T	uc001uxn.2	+	4	667	c.345C>T	c.(343-345)TTC>TTT	p.F115F	SUGT1L1_uc001uxp.1_Intron|SLC25A15_uc010tfb.1_Silent_p.F21F|SUGT1L1_uc001uxo.1_RNA	NM_014252	NP_055067	Q9Y619	ORNT1_HUMAN	mitochondrial ornithine transporter 1	115	Helical; Name=3; (Potential).|Solcar 2.				cellular amino acid metabolic process|mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity				0		Lung NSC(96;3.55e-06)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;1.48e-08)|Epithelial(112;7.51e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000191)|GBM - Glioblastoma multiforme(144;0.00231)|BRCA - Breast invasive adenocarcinoma(63;0.0704)	L-Ornithine(DB00129)	CCGGTTCCTTCGCCTCTGCCT	0.547													10	103					0	0	1	0	0
ELF1	1997	broad.mit.edu	37	13	41508052	41508052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:41508052G>A	uc001uxs.2	-	9	1742	c.1369C>T	c.(1369-1371)CCA>TCA	p.P457S	ELF1_uc010tfc.1_Missense_Mutation_p.P433S|ELF1_uc010acd.2_Missense_Mutation_p.P350S	NM_172373	NP_758961	P32519	ELF1_HUMAN	E74-like factor 1 (ets domain transcription	457					positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung NSC(96;8.3e-05)|Prostate(109;0.0233)|Breast(139;0.0296)|Lung SC(185;0.0367)		all cancers(112;1.87e-08)|Epithelial(112;8.45e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000202)|GBM - Glioblastoma multiforme(144;0.00266)|BRCA - Breast invasive adenocarcinoma(63;0.072)		CCTGCTGATGGATCTGTGCTG	0.443													26	271					0	0	1	0	0
MTRF1	9617	broad.mit.edu	37	13	41814411	41814411	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:41814411G>A	uc001uxx.2	-	8	1326	c.856C>T	c.(856-858)CCT>TCT	p.P286S	MTRF1_uc001uxy.2_Missense_Mutation_p.P286S|MTRF1_uc001uxz.2_Missense_Mutation_p.P122S|MTRF1_uc010tff.1_Missense_Mutation_p.P299S|MTRF1_uc001uyc.1_Missense_Mutation_p.P286S	NM_004294	NP_004285	O75570	RF1M_HUMAN	mitochondrial translational release factor 1	286					regulation of translational termination	mitochondrion	translation release factor activity, codon specific				0		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)|Ovarian(182;0.125)		OV - Ovarian serous cystadenocarcinoma(117;4.24e-10)|all cancers(112;2.05e-09)|Epithelial(112;2.48e-09)|GBM - Glioblastoma multiforme(144;0.00115)|BRCA - Breast invasive adenocarcinoma(63;0.0721)|KIRC - Kidney renal clear cell carcinoma(186;0.248)		TCTGGCTGAGGAAGGACAATA	0.532													35	110					0	0	1	0	0
KIAA0564	23078	broad.mit.edu	37	13	42185719	42185719	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:42185719G>A	uc001uyj.2	-	39	4940	c.4870C>T	c.(4870-4872)CAG>TAG	p.Q1624*		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1624						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		GACCTCTGCTGGAATGCTCTC	0.512													31	109					0	0	1	0	0
KIAA0564	23078	broad.mit.edu	37	13	42295569	42295569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:42295569G>A	uc001uyj.2	-	25	2971	c.2901C>T	c.(2899-2901)GAC>GAT	p.D967D	KIAA0564_uc001uyk.2_Silent_p.D967D	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	967						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TAATCCCTTGGTCAGCCAAAC	0.473													43	117					0	0	1	0	0
KIAA0564	23078	broad.mit.edu	37	13	42306227	42306227	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:42306227C>T	uc001uyj.2	-	22	2561	c.2491G>A	c.(2491-2493)GAC>AAC	p.D831N	KIAA0564_uc001uyk.2_Missense_Mutation_p.D831N	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	831						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		AAAGGTGAGTCTTCATATACA	0.343													15	53					0	0	1	0	0
AKAP11	11215	broad.mit.edu	37	13	42875928	42875928	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:42875928C>T	uc001uys.1	+	8	3221	c.3046C>T	c.(3046-3048)CAT>TAT	p.H1016Y		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1016					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		TTCTATGGTTCATGGATCCTC	0.423													23	84					0	0	1	0	0
TNFSF11	8600	broad.mit.edu	37	13	43181040	43181040	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:43181040C>T	uc001uyu.2	+	5	1089	c.940C>T	c.(940-942)CGA>TGA	p.R314*	TNFSF11_uc001uyt.2_Nonsense_Mutation_p.R241*	NM_003701	NP_003692	O14788	TNF11_HUMAN	tumor necrosis factor ligand superfamily, member	314	Extracellular (Potential).				immune response|monocyte chemotaxis|osteoclast differentiation|positive regulation of bone resorption|positive regulation of corticotropin-releasing hormone secretion|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of homotypic cell-cell adhesion|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell activation	cytoplasm|extracellular space|integral to plasma membrane	cytokine activity|receptor activity|tumor necrosis factor receptor binding				0		Lung NSC(96;1.11e-05)|Breast(139;0.00868)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000249)|GBM - Glioblastoma multiforme(144;0.00119)|BRCA - Breast invasive adenocarcinoma(63;0.073)		TTTTAAAGTTCGAGATATAGA	0.408													31	74					0	0	1	0	0
ENOX1	55068	broad.mit.edu	37	13	43788174	43788174	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:43788174C>T	uc001uza.3	-	17	2184	c.1884G>A	c.(1882-1884)CTG>CTA	p.L628L	ENOX1_uc001uzb.3_Silent_p.L628L|ENOX1_uc001uzc.3_Silent_p.L628L|ENOX1_uc001uyz.3_Silent_p.L237L	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	628					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		ATCTTTTTTCCAGCGTGGCTC	0.448													28	88					0	0	1	0	0
ENOX1	55068	broad.mit.edu	37	13	43788217	43788217	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:43788217G>A	uc001uza.3	-	17	2141	c.1841C>T	c.(1840-1842)CCA>CTA	p.P614L	ENOX1_uc001uzb.3_Missense_Mutation_p.P614L|ENOX1_uc001uzc.3_Missense_Mutation_p.P614L|ENOX1_uc001uyz.3_Missense_Mutation_p.P223L	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	614					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		GAACATGCGTGGCAGCCTCAT	0.428													13	111					0	0	1	0	0
ENOX1	55068	broad.mit.edu	37	13	43872552	43872552	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:43872552C>T	uc001uza.3	-	12	1676	c.1376G>A	c.(1375-1377)CGA>CAA	p.R459Q	ENOX1_uc001uzb.3_Missense_Mutation_p.R459Q|ENOX1_uc001uzc.3_Missense_Mutation_p.R459Q|ENOX1_uc001uyz.3_Missense_Mutation_p.R68Q	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	459	Potential.				electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		TTCTTCTGTTCGGAAAAGCTG	0.478													42	110					0	0	1	0	0
ENOX1	55068	broad.mit.edu	37	13	43872643	43872643	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:43872643G>A	uc001uza.3	-	12	1585	c.1285C>T	c.(1285-1287)CTG>TTG	p.L429L	ENOX1_uc001uzb.3_Silent_p.L429L|ENOX1_uc001uzc.3_Silent_p.L429L|ENOX1_uc001uyz.3_Silent_p.L38L	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	429	Potential.				electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		TCCTCTTTCAGAGCGTAGGCC	0.527													32	75					0	0	1	0	0
ENOX1	55068	broad.mit.edu	37	13	43896592	43896592	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:43896592C>T	uc001uza.3	-	11	1489	c.1189G>A	c.(1189-1191)GAA>AAA	p.E397K	ENOX1_uc001uzb.3_Missense_Mutation_p.E397K|ENOX1_uc001uzc.3_Missense_Mutation_p.E397K|ENOX1_uc001uyz.3_Missense_Mutation_p.E6K|ENOX1_uc010tfm.1_Missense_Mutation_p.E210K	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	397					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		ATTTCTTCTTCGCGGCGGATG	0.478													30	58					0	0	1	0	0
ENOX1	55068	broad.mit.edu	37	13	43918846	43918846	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:43918846G>A	uc001uza.3	-	9	1164	c.864C>T	c.(862-864)TCC>TCT	p.S288S	ENOX1_uc001uzb.3_Silent_p.S288S|ENOX1_uc001uzc.3_Silent_p.S288S|ENOX1_uc001uyz.3_5'UTR|ENOX1_uc010tfm.1_Silent_p.S101S	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	288					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		GTTCAATCCAGGAAAGCAGCA	0.458													18	104					0	0	1	0	0
ENOX1	55068	broad.mit.edu	37	13	43930230	43930230	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:43930230C>T	uc001uza.3	-	8	948	c.648G>A	c.(646-648)GTG>GTA	p.V216V	ENOX1_uc001uzb.3_Silent_p.V216V|ENOX1_uc001uzc.3_Silent_p.V216V|ENOX1_uc001uyz.3_5'UTR|ENOX1_uc010tfm.1_Silent_p.V29V	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	216	RRM.				electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		GGGCAAAGTCCACATGAAGGC	0.547													17	59					0	0	1	0	0
C13orf31	144811	broad.mit.edu	37	13	44464388	44464388	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:44464388C>T	uc010acg.2	+	6	1757	c.1272C>T	c.(1270-1272)GGC>GGT	p.G424G	C13orf31_uc001uzf.3_Silent_p.G424G	NM_001128303	NP_001121775	Q8IV20	CM031_HUMAN	hypothetical protein LOC144811	424											0		Lung NSC(96;0.000163)|all_hematologic(4;0.0127)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Breast(139;0.0364)|Lung SC(185;0.0367)|Acute lymphoblastic leukemia(4;0.138)		GBM - Glioblastoma multiforme(144;0.000573)|BRCA - Breast invasive adenocarcinoma(63;0.121)		CACAGATTGGCTTCATATCAA	0.279													20	64					0	0	1	0	0
TSC22D1	8848	broad.mit.edu	37	13	45149450	45149450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:45149450G>A	uc001uzn.3	-	1	1252	c.761C>T	c.(760-762)CCC>CTC	p.P254L	TSC22D1_uc001uzo.1_Missense_Mutation_p.P254L	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	254					transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		TGGGCTTGAGGGTGGCCCACC	0.363													23	48					0	0	1	0	0
NUFIP1	26747	broad.mit.edu	37	13	45563333	45563333	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:45563333G>A	uc001uzp.2	-	1	281	c.239C>T	c.(238-240)CCC>CTC	p.P80L	KIAA1704_uc010tfo.1_5'Flank|KIAA1704_uc001uzq.2_5'Flank|KIAA1704_uc001uzr.1_5'Flank|KIAA1704_uc001uzs.2_5'Flank	NM_012345	NP_036477	Q9UHK0	NUFP1_HUMAN	nuclear fragile X mental retardation protein	80	Pro-rich.				box C/D snoRNP assembly|positive regulation of transcription from RNA polymerase II promoter|RNA processing	actin cytoskeleton|cytosolic ribosome|nuclear matrix|nucleolus|perichromatin fibrils|pre-snoRNP complex|presynaptic active zone|transcription elongation factor complex	DNA binding|identical protein binding|protein binding, bridging|RNA binding|zinc ion binding				0		Lung NSC(96;8.23e-05)|Breast(139;0.00378)|Prostate(109;0.0107)|all_hematologic(4;0.014)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)|Acute lymphoblastic leukemia(4;0.143)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000306)|BRCA - Breast invasive adenocarcinoma(63;0.125)		GGCGTCGAAGGGGGGCGGAGC	0.662													16	24					0	0	1	0	0
KIAA1704	55425	broad.mit.edu	37	13	45580398	45580398	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:45580398C>T	uc001uzq.2	+	3	386	c.283C>T	c.(283-285)CTT>TTT	p.L95F	KIAA1704_uc010tfo.1_RNA|KIAA1704_uc001uzr.1_Missense_Mutation_p.L95F|KIAA1704_uc001uzs.2_5'UTR|KIAA1704_uc001uzt.2_5'UTR	NM_018559	NP_061029	Q8IXQ4	K1704_HUMAN	hypothetical protein LOC55425	95										pancreas(1)|skin(1)	2		Lung NSC(96;0.00143)|Prostate(109;0.0137)|Breast(139;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.133)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000313)|BRCA - Breast invasive adenocarcinoma(63;0.126)		TGGACCAGCCCTTCCTCCTGG	0.284													67	255					0	0	1	0	0
GTF2F2	2963	broad.mit.edu	37	13	45725907	45725907	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:45725907C>T	uc001uzw.2	+	4	405	c.245C>T	c.(244-246)CCA>CTA	p.P82L	GTF2F2_uc001uzv.2_Missense_Mutation_p.P82L	NM_004128	NP_004119	P13984	T2FB_HUMAN	general transcription factor IIF, polypeptide 2,	82					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	microtubule cytoskeleton|transcription factor TFIIF complex	ATP binding|ATP-dependent helicase activity|DNA binding|protein binding				0		Lung NSC(96;0.00115)|Prostate(109;0.00578)|Breast(139;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.133)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000647)		AGAGAACATCCATTTGTCTTG	0.368													60	161					0	0	1	0	0
KCTD4	386618	broad.mit.edu	37	13	45768148	45768148	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:45768148C>T	uc001uzx.3	-	2	959	c.555G>A	c.(553-555)GAG>GAA	p.E185E	GTF2F2_uc001uzv.2_Intron|GTF2F2_uc001uzw.2_Intron	NM_198404	NP_940686	Q8WVF5	KCTD4_HUMAN	potassium channel tetramerisation domain	185						voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Lung NSC(96;6.55e-05)|Breast(139;0.00378)|Prostate(109;0.00438)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000249)|BRCA - Breast invasive adenocarcinoma(63;0.207)		TTGAAAACTCCTCTGGAAATC	0.363													51	107					0	0	1	0	0
SPERT	220082	broad.mit.edu	37	13	46287520	46287520	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:46287520G>A	uc001van.1	+	3	440	c.360G>A	c.(358-360)CGG>CGA	p.R120R	SPERT_uc001vao.2_Silent_p.R84R	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	120						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		ACCCGCCGCGGGTGCAGCTCA	0.627													33	82					0	0	1	0	0
SPERT	220082	broad.mit.edu	37	13	46288297	46288297	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:46288297G>A	uc001van.1	+	3	1217	c.1137G>A	c.(1135-1137)GAG>GAA	p.E379E	SPERT_uc001vao.2_Silent_p.E343E	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	379	Potential.					cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		TGCAGGAGGAGAACAGGACCC	0.657													4	15					0	0	1	0	0
SIAH3	283514	broad.mit.edu	37	13	46358047	46358047	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:46358047T>A	uc001vap.2	-	2	363	c.281A>T	c.(280-282)GAG>GTG	p.E94V		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	94	SIAH-type; degenerate.|His-rich.				multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						CAGCCCCGCCTCCtggtggtg	0.438													17	36					0	0	1	0	0
ZC3H13	23091	broad.mit.edu	37	13	46563104	46563104	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:46563104G>A	uc010tfw.1	-	8	1079	c.1073C>T	c.(1072-1074)TCT>TTT	p.S358F	ZC3H13_uc001vas.1_Missense_Mutation_p.S358F|ZC3H13_uc001vat.1_Missense_Mutation_p.S358F	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	358	Arg/Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		CCGCTGATAAGATGGTGAAGG	0.448													13	37					0	0	1	0	0
C13orf18	80183	broad.mit.edu	37	13	46937265	46937265	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:46937265C>T	uc010acl.2	-	6	1515	c.910G>A	c.(910-912)GAA>AAA	p.E304K	C13orf18_uc001vbf.3_Missense_Mutation_p.E237K|C13orf18_uc001vbg.3_Missense_Mutation_p.E32K|C13orf18_uc010tfz.1_Missense_Mutation_p.E147K|C13orf18_uc010acm.2_Missense_Mutation_p.E169K|C13orf18_uc010acn.2_Missense_Mutation_p.E89K|C13orf18_uc001vbe.3_Missense_Mutation_p.E304K|C13orf18_uc001vbh.3_Missense_Mutation_p.E304K|C13orf18_uc001vbi.3_Missense_Mutation_p.E147K|C13orf18_uc010aco.1_Missense_Mutation_p.E304K	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	304											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		ATAACAAATTCATCAACATCG	0.423													9	38					0	0	1	0	0
C13orf18	80183	broad.mit.edu	37	13	46942907	46942907	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:46942907G>A	uc010acl.2	-	4	1184	c.579C>T	c.(577-579)TTC>TTT	p.F193F	C13orf18_uc001vbf.3_Silent_p.F126F|C13orf18_uc001vbg.3_5'UTR|C13orf18_uc010tfz.1_Silent_p.F36F|C13orf18_uc010acm.2_Silent_p.F58F|C13orf18_uc010acn.2_5'UTR|C13orf18_uc001vbe.3_Silent_p.F193F|C13orf18_uc001vbh.3_Silent_p.F193F|C13orf18_uc001vbi.3_Silent_p.F36F|C13orf18_uc010aco.1_Silent_p.F193F|C13orf18_uc010tga.1_Silent_p.F126F	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	193											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		CCTCTGGTGAGAAGGAATTCG	0.358													42	119					0	0	1	0	0
C13orf18	80183	broad.mit.edu	37	13	46946124	46946124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:46946124C>T	uc010acl.2	-	3	1092	c.487G>A	c.(487-489)GAC>AAC	p.D163N	C13orf18_uc001vbf.3_Missense_Mutation_p.D96N|C13orf18_uc001vbg.3_5'UTR|C13orf18_uc010tfz.1_Intron|C13orf18_uc010acm.2_Missense_Mutation_p.D28N|C13orf18_uc010acn.2_Intron|C13orf18_uc001vbe.3_Missense_Mutation_p.D163N|C13orf18_uc001vbh.3_Missense_Mutation_p.D163N|C13orf18_uc001vbi.3_Intron|C13orf18_uc010aco.1_Missense_Mutation_p.D163N|C13orf18_uc010tga.1_Missense_Mutation_p.D96N	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	163											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		AAAGCACTGTCAGTCTCAGGA	0.517													9	32					0	0	1	0	0
C13orf18	80183	broad.mit.edu	37	13	46946318	46946318	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:46946318G>A	uc010acl.2	-	3	898	c.293C>T	c.(292-294)TCC>TTC	p.S98F	C13orf18_uc001vbf.3_Missense_Mutation_p.S31F|C13orf18_uc001vbg.3_5'UTR|C13orf18_uc010tfz.1_Intron|C13orf18_uc010acm.2_5'UTR|C13orf18_uc010acn.2_Intron|C13orf18_uc001vbe.3_Missense_Mutation_p.S98F|C13orf18_uc001vbh.3_Missense_Mutation_p.S98F|C13orf18_uc001vbi.3_Intron|C13orf18_uc010aco.1_Missense_Mutation_p.S98F|C13orf18_uc010tga.1_Missense_Mutation_p.S31F	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	98	Ser-rich.										0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		CTCTGCCAGGGAGTCCCCGAG	0.572													31	61					0	0	1	0	0
C13orf18	80183	broad.mit.edu	37	13	46946496	46946496	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:46946496G>A	uc010acl.2	-	3	720	c.115C>T	c.(115-117)CCT>TCT	p.P39S	C13orf18_uc001vbf.3_Intron|C13orf18_uc001vbg.3_5'UTR|C13orf18_uc010tfz.1_Intron|C13orf18_uc010acm.2_Intron|C13orf18_uc010acn.2_Intron|C13orf18_uc001vbe.3_Missense_Mutation_p.P39S|C13orf18_uc001vbh.3_Missense_Mutation_p.P39S|C13orf18_uc001vbi.3_Intron|C13orf18_uc010aco.1_Missense_Mutation_p.P39S|C13orf18_uc010tga.1_Intron	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	39											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		AATTGGCAAGGAGGATGGTCA	0.542													8	30					0	0	1	0	0
LRCH1	23143	broad.mit.edu	37	13	47260154	47260154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:47260154C>T	uc001vbj.2	+	5	1036	c.800C>T	c.(799-801)CCT>CTT	p.P267L	LRCH1_uc010acp.2_Missense_Mutation_p.P267L|LRCH1_uc001vbk.2_Missense_Mutation_p.P267L|LRCH1_uc001vbl.3_Missense_Mutation_p.P267L	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	267	LRR 8.									ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		GAGAATAACCCTCTGCAGTCT	0.393													18	55					0	0	1	0	0
LRCH1	23143	broad.mit.edu	37	13	47286726	47286726	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:47286726C>T	uc001vbj.2	+	15	1884	c.1648C>T	c.(1648-1650)CGA>TGA	p.R550*	LRCH1_uc001vbk.2_Nonsense_Mutation_p.R550*|LRCH1_uc001vbl.3_Nonsense_Mutation_p.R550*	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	550										ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		CCTGAAGCCTCGATCAGGTAA	0.423													63	130					0	0	1	0	0
ESD	2098	broad.mit.edu	37	13	47355713	47355713	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:47355713G>A	uc001vbn.2	-	7	602	c.419C>T	c.(418-420)CCC>CTC	p.P140L	ESD_uc001vbo.2_Missense_Mutation_p.P140L|ESD_uc001vbp.1_5'UTR	NM_001984	NP_001975	P10768	ESTD_HUMAN	esterase D/formylglutathione hydrolase	140						cytoplasmic membrane-bounded vesicle	carboxylesterase activity|S-formylglutathione hydrolase activity			ovary(1)	1		all_lung(13;3.54e-08)|Lung NSC(96;9.1e-06)|Breast(56;0.000148)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)		GBM - Glioblastoma multiforme(144;2.66e-05)	Glutathione(DB00143)	CATCCTTTGGGGATCCACTGG	0.353													43	131					0	0	1	0	0
SUCLA2	8803	broad.mit.edu	37	13	48571090	48571090	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:48571090G>A	uc001vbs.2	-	2	216	c.159C>T	c.(157-159)CTC>CTT	p.L53L	SUCLA2_uc010tgb.1_5'UTR|SUCLA2_uc010tgc.1_5'UTR|SUCLA2_uc010tgd.1_5'UTR|SUCLA2_uc001vbt.1_RNA|SUCLA2_uc001vbu.1_Silent_p.L53L	NM_003850	NP_003841	Q9P2R7	SUCB1_HUMAN	succinate-CoA ligase, ADP-forming, beta subunit	53					succinyl-CoA pathway|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			central_nervous_system(1)	1		all_cancers(8;1.13e-24)|all_epithelial(8;1.78e-13)|all_lung(13;2.85e-06)|Breast(56;0.000141)|Lung NSC(96;0.000226)|all_hematologic(8;0.000885)|Prostate(109;0.00132)|Acute lymphoblastic leukemia(8;0.0167)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;2.1e-06)	Succinic acid(DB00139)	CATGTAGTGAGAGATTCCTTT	0.403													29	59					0	0	1	0	0
CYSLTR2	57105	broad.mit.edu	37	13	49281254	49281254	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:49281254G>A	uc010acx.1	+	6	984	c.301G>A	c.(301-303)GGC>AGC	p.G101S	CYSLTR2_uc010acy.1_Missense_Mutation_p.G101S|CYSLTR2_uc010acz.1_Missense_Mutation_p.G101S|CYSLTR2_uc010ada.1_Missense_Mutation_p.G101S|CYSLTR2_uc010adb.1_Missense_Mutation_p.G101S|CYSLTR2_uc010adc.1_Missense_Mutation_p.G101S|CYSLTR2_uc010add.1_Missense_Mutation_p.G101S|CYSLTR2_uc010acw.1_Missense_Mutation_p.G101S|CYSLTR2_uc001vck.2_Missense_Mutation_p.G101S	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	101	Extracellular (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	TTATCTTAGAGGCTCCAATTG	0.428													28	51					0	0	1	0	0
CYSLTR2	57105	broad.mit.edu	37	13	49281283	49281283	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:49281283C>T	uc010acx.1	+	6	1013	c.330C>T	c.(328-330)GCC>GCT	p.A110A	CYSLTR2_uc010acy.1_Silent_p.A110A|CYSLTR2_uc010acz.1_Silent_p.A110A|CYSLTR2_uc010ada.1_Silent_p.A110A|CYSLTR2_uc010adb.1_Silent_p.A110A|CYSLTR2_uc010adc.1_Silent_p.A110A|CYSLTR2_uc010add.1_Silent_p.A110A|CYSLTR2_uc010acw.1_Silent_p.A110A|CYSLTR2_uc001vck.2_Silent_p.A110A	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	110	Extracellular (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	GAGACCTGGCCTGCAGGATTA	0.453													46	71					0	0	1	0	0
CYSLTR2	57105	broad.mit.edu	37	13	49281892	49281892	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:49281892G>A	uc010acx.1	+	6	1622	c.939G>A	c.(937-939)AAG>AAA	p.K313K	CYSLTR2_uc010acy.1_Silent_p.K313K|CYSLTR2_uc010acz.1_Silent_p.K313K|CYSLTR2_uc010ada.1_Silent_p.K313K|CYSLTR2_uc010adb.1_Silent_p.K313K|CYSLTR2_uc010adc.1_Silent_p.K313K|CYSLTR2_uc010add.1_Silent_p.K313K|CYSLTR2_uc010acw.1_Silent_p.K313K|CYSLTR2_uc001vck.2_Silent_p.K313K	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	313	Cytoplasmic (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	AGAATTTTAAGGACAGACTAA	0.443													34	67					0	0	1	0	0
FNDC3A	22862	broad.mit.edu	37	13	49742868	49742868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:49742868C>T	uc001vcm.2	+	10	1462	c.1157C>T	c.(1156-1158)TCA>TTA	p.S386L	FNDC3A_uc001vcn.2_Missense_Mutation_p.S386L|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcp.1_Missense_Mutation_p.S330L|FNDC3A_uc001vcq.2_Missense_Mutation_p.S330L	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	386	Fibronectin type-III 2.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		ACCAAAAATTCACTCACTTTG	0.398													55	156					0	0	1	0	0
FNDC3A	22862	broad.mit.edu	37	13	49776046	49776046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:49776046C>T	uc001vcm.2	+	24	3403	c.3098C>T	c.(3097-3099)CCC>CTC	p.P1033L	FNDC3A_uc001vcn.2_Missense_Mutation_p.P1033L|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcq.2_Missense_Mutation_p.P977L	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	1033	Fibronectin type-III 8.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		GGGGAAGGTCCCCTCTCCCAA	0.353													27	83					0	0	1	0	0
MLNR	2862	broad.mit.edu	37	13	49796481	49796481	+	Missense_Mutation	SNP	G	A	A	rs141878008		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:49796481G>A	uc010tgj.1	+	2	1207	c.1207G>A	c.(1207-1209)GAG>AAG	p.E403K		NM_001507	NP_001498	O43193	MTLR_HUMAN	motilin receptor	403	Cytoplasmic (Potential).				digestion	integral to plasma membrane	growth hormone-releasing hormone receptor activity				0		all_lung(13;8.31e-06)|Lung NSC(96;0.000251)|Breast(56;0.0008)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;6.1e-09)		GGGCTACACCGAGACAAGCGC	0.572													4	20					0	0	1	0	0
RCBTB1	55213	broad.mit.edu	37	13	50115837	50115837	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:50115837G>A	uc001vde.1	-	11	1560	c.1299C>T	c.(1297-1299)GTC>GTT	p.V433V		NM_018191	NP_060661	Q8NDN9	RCBT1_HUMAN	regulator of chromosome condensation (RCC1) and	433	BTB 1.				cell cycle|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(1)	1		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;4.7e-09)		GCGGCAGGTCGACTGTGTCTG	0.458													30	50					0	0	1	0	0
LOC220429	220429	broad.mit.edu	37	13	50464873	50464873	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:50464873C>T	uc001vdk.2	+	1	329	c.147C>T	c.(145-147)GTC>GTT	p.V49V		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						GTGCAGCTGTCCTTGGATTTG	0.488													15	30					0	0	1	0	0
LOC220429	220429	broad.mit.edu	37	13	50465065	50465065	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:50465065G>A	uc001vdk.2	+	1	521	c.339G>A	c.(337-339)GAG>GAA	p.E113E		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						CACCTTTAGAGGATGCCAGCT	0.403													64	167					0	0	1	0	0
LOC220429	220429	broad.mit.edu	37	13	50466841	50466841	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:50466841G>A	uc001vdk.2	+	1	2297	c.2115G>A	c.(2113-2115)GTG>GTA	p.V705V		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						TGTTTCCAGTGGATACGAGGG	0.522													85	248					0	0	1	0	0
C13orf1	57213	broad.mit.edu	37	13	50505152	50505152	+	Splice_Site	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:50505152A>G	uc001vdl.2	-	2	485	c.223_splice	c.e2+1	p.G75_splice	C13orf1_uc001vdm.2_Intron|C13orf1_uc010tgm.1_Intron|C13orf1_uc010adj.2_Splice_Site_p.G75_splice	NM_020456	NP_065189	Q5W111	SPRY7_HUMAN	chromosome 13 open reading frame 1 isoform 1												0		Lung NSC(96;7.5e-06)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Acute lymphoblastic leukemia(7;0.117)		GBM - Glioblastoma multiforme(99;1.72e-10)|COAD - Colon adenocarcinoma(199;0.208)		CATTATACCAACCTGTGGACT	0.313													15	49					0	0	1	0	0
RNASEH2B	79621	broad.mit.edu	37	13	51522143	51522143	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:51522143C>A	uc001vfa.3	+	8	958	c.637C>A	c.(637-639)CAT>AAT	p.H213N	RNASEH2B_uc001vfb.3_Missense_Mutation_p.H213N	NM_024570	NP_078846	Q5TBB1	RNH2B_HUMAN	ribonuclease H2, subunit B isoform 1	213					RNA catabolic process	nucleus|ribonuclease H2 complex					0		Acute lymphoblastic leukemia(7;1.03e-07)|Breast(56;0.00122)|Lung NSC(96;0.00143)|Prostate(109;0.0047)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;9e-08)		TCGTTATGCCCATGGTCTGAT	0.269													43	173					4.00472e-15	4.02308e-15	1	1	0
INTS6	26512	broad.mit.edu	37	13	51943380	51943380	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:51943380G>A	uc001vfk.2	-	16	2785	c.2171C>T	c.(2170-2172)TCA>TTA	p.S724L	INTS6_uc001vfi.2_Missense_Mutation_p.S408L|INTS6_uc001vfj.2_Missense_Mutation_p.S711L|INTS6_uc001vfl.2_Missense_Mutation_p.S546L	NM_012141	NP_036273	Q9UL03	INT6_HUMAN	integrator complex subunit 6 isoform a	724					snRNA processing	actin cytoskeleton|integrator complex	protein binding|transmembrane receptor activity			ovary(1)|lung(1)	2		Breast(56;0.000286)|Lung NSC(96;0.00145)|Prostate(109;0.00403)|Hepatocellular(98;0.065)|Myeloproliferative disorder(33;0.163)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;7.7e-08)		AATGTCTGATGAAAGTTGGTC	0.388													9	64					0	0	1	0	0
CCDC70	83446	broad.mit.edu	37	13	52439538	52439538	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52439538G>A	uc001vfu.3	+	2	320	c.24G>A	c.(22-24)CTG>CTA	p.L8L	uc010tgr.1_RNA	NM_031290	NP_112580	Q6NSX1	CCD70_HUMAN	coiled-coil domain containing 70 precursor	8						extracellular region|plasma membrane					0		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.0107)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;2.4e-08)		CATTCCGGCTGATAAGGAAGA	0.572													30	58					0	0	1	0	0
CCDC70	83446	broad.mit.edu	37	13	52439631	52439631	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52439631G>A	uc001vfu.3	+	2	413	c.117G>A	c.(115-117)AAG>AAA	p.K39K	uc010tgr.1_RNA	NM_031290	NP_112580	Q6NSX1	CCD70_HUMAN	coiled-coil domain containing 70 precursor	39						extracellular region|plasma membrane					0		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.0107)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;2.4e-08)		TTCGCCAGAAGAAACTAATGC	0.488													24	87					0	0	1	0	0
CCDC70	83446	broad.mit.edu	37	13	52439799	52439799	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52439799A>G	uc001vfu.3	+	2	581	c.285A>G	c.(283-285)GAA>GAG	p.E95E	uc010tgr.1_RNA	NM_031290	NP_112580	Q6NSX1	CCD70_HUMAN	coiled-coil domain containing 70 precursor	95						extracellular region|plasma membrane					0		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.0107)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;2.4e-08)		CTTTCTGGGAAGAGGAGAAAA	0.468													13	101					0	0	1	0	0
ATP7B	540	broad.mit.edu	37	13	52509050	52509050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52509050G>A	uc001vfw.2	-	21	4397	c.4240C>T	c.(4240-4242)CCC>TCC	p.P1414S	ATP7B_uc010adv.2_Missense_Mutation_p.P984S|ATP7B_uc001vfx.2_Missense_Mutation_p.P1207S|ATP7B_uc001vfy.2_Missense_Mutation_p.P1303S|ATP7B_uc010tgt.1_Missense_Mutation_p.P1349S|ATP7B_uc010tgu.1_Missense_Mutation_p.P1366S|ATP7B_uc010tgv.1_Missense_Mutation_p.P1336S|ATP7B_uc001vfv.2_Missense_Mutation_p.P686S|ATP7B_uc010tgs.1_Missense_Mutation_p.P625S	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1414	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		GTGGCCCTGGGGGAGTCCCGC	0.632									Wilson_disease				22	52					0	0	1	0	0
ATP7B	540	broad.mit.edu	37	13	52520529	52520529	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52520529G>A	uc001vfw.2	-	13	3108	c.2951C>T	c.(2950-2952)CCC>CTC	p.P984L	ATP7B_uc010adv.2_Missense_Mutation_p.P554L|ATP7B_uc001vfx.2_Missense_Mutation_p.P777L|ATP7B_uc001vfy.2_Missense_Mutation_p.P873L|ATP7B_uc010tgt.1_Intron|ATP7B_uc010tgu.1_Missense_Mutation_p.P936L|ATP7B_uc010tgv.1_Missense_Mutation_p.P906L|ATP7B_uc001vfv.2_Missense_Mutation_p.P256L|ATP7B_uc010tgs.1_Missense_Mutation_p.P256L	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	984	Helical; (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CAGGGAGCAGGGGCAGGCAAT	0.622									Wilson_disease				5	36					0	0	1	0	0
ATP7B	540	broad.mit.edu	37	13	52539139	52539139	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52539139G>A	uc001vfw.2	-	5	1895	c.1738C>T	c.(1738-1740)CAC>TAC	p.H580Y	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Missense_Mutation_p.H580Y|ATP7B_uc001vfy.2_Missense_Mutation_p.H469Y|ATP7B_uc010tgt.1_Missense_Mutation_p.H580Y|ATP7B_uc010tgu.1_Missense_Mutation_p.H580Y|ATP7B_uc010tgv.1_Missense_Mutation_p.H580Y|ATP7B_uc010tgw.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	580	HMA 6.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TCTATGTTGTGGACACAGGAC	0.517									Wilson_disease				32	60					0	0	1	0	0
ATP7B	540	broad.mit.edu	37	13	52549277	52549277	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52549277G>A	uc001vfw.2	-	2	236	c.79C>T	c.(79-81)CGT>TGT	p.R27C	ATP7B_uc010adv.2_Missense_Mutation_p.R27C|ATP7B_uc001vfx.2_Missense_Mutation_p.R27C|ATP7B_uc001vfy.2_Missense_Mutation_p.R27C|ATP7B_uc010tgt.1_Missense_Mutation_p.R27C|ATP7B_uc010tgu.1_Missense_Mutation_p.R27C|ATP7B_uc010tgv.1_Missense_Mutation_p.R27C|ATP7B_uc010tgw.1_5'UTR	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	27	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TCCCAGGCACGGGTAGGCAAA	0.428									Wilson_disease				16	45					0	0	1	0	0
UTP14C	9724	broad.mit.edu	37	13	52604148	52604148	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52604148C>T	uc001vgb.2	+	2	1743	c.1208C>T	c.(1207-1209)TCT>TTT	p.S403F	UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	403					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		CATGAGGTTTCTGCAAGTGAG	0.498													25	75					0	0	1	0	0
UTP14C	9724	broad.mit.edu	37	13	52604519	52604519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52604519C>T	uc001vgb.2	+	2	2114	c.1579C>T	c.(1579-1581)CCC>TCC	p.P527S	UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	527					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		TAAGGAGCTTCCCAGACCTGT	0.468													71	138					0	0	1	0	0
NEK5	341676	broad.mit.edu	37	13	52660491	52660491	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52660491C>T	uc001vge.2	-	16	1541	c.1401G>A	c.(1399-1401)TGG>TGA	p.W467*		NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	467							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		CTAACTGCTTCCAATATTCCT	0.363													23	96					0	0	1	0	0
NEK5	341676	broad.mit.edu	37	13	52682524	52682524	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52682524G>A	uc001vge.2	-	8	624	c.484C>T	c.(484-486)CGA>TGA	p.R162*	NEK5_uc001vgf.2_Nonsense_Mutation_p.R162*	NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	162	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		ATACAAGTTCGAGCAAGTTCC	0.333													33	65					0	0	1	0	0
NEK3	4752	broad.mit.edu	37	13	52718862	52718862	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52718862G>A	uc001vgi.2	-	9	1003	c.768C>T	c.(766-768)ATC>ATT	p.I256I	NEK3_uc001vgg.2_Silent_p.I250I|NEK3_uc001vgh.2_Silent_p.I277I|NEK3_uc010tgx.1_RNA|NEK3_uc010tgy.1_Silent_p.I256I	NM_152720	NP_689933	P51956	NEK3_HUMAN	NIMA-related kinase 3 isoform a	256	Interaction with VAV2.|Protein kinase.				cell division|mitosis	nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.034)|Hepatocellular(98;0.065)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.81e-08)		GCCGAGCTACGATGCCTCGAG	0.463													9	32					0	0	1	0	0
THSD1P1	374500	broad.mit.edu	37	13	52854008	52854009	+	RNA	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52854008_52854009CC>TT	uc001vgm.1	-	6		c.517_518GG>AA								Homo sapiens cDNA FLJ14630 fis, clone NT2RP2000459.												0						GACTGGCCTCCCGAAGATGGAA	0.302													3	18					0	0	1	0	0
THSD1	55901	broad.mit.edu	37	13	52952628	52952628	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:52952628C>T	uc001vgo.2	-	5	2022	c.1477G>A	c.(1477-1479)GGC>AGC	p.G493S	THSD1_uc001vgp.2_Missense_Mutation_p.G440S|THSD1_uc010tgz.1_Missense_Mutation_p.G114S|THSD1_uc010aea.2_5'UTR	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	493	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		AGAGGGATGCCTGTGTCCCCT	0.647													21	69					0	0	1	0	0
TPTE2P3	220115	broad.mit.edu	37	13	53096829	53096829	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:53096829C>T	uc001vgw.2	+	11		c.1206C>T				NR_002793				Homo sapiens TPTE and PTEN homologous inositol lipid phosphatase pseudogene, mRNA (cDNA clone IMAGE:5298506), with apparent retained intron.												0						ACCTAATTTTCACTGATAGCA	0.294													14	28					0	0	1	0	0
LECT1	11061	broad.mit.edu	37	13	53286957	53286957	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:53286957C>T	uc001vhf.2	-	5	627	c.516G>A	c.(514-516)TGG>TGA	p.W172*	LECT1_uc001vhg.2_Nonsense_Mutation_p.W172*|LECT1_uc001vhh.2_Nonsense_Mutation_p.W161*	NM_007015	NP_008946	O75829	LECT1_HUMAN	leukocyte cell derived chemotaxin 1 isoform 1	172	BRICHOS.				cartilage development|proteoglycan metabolic process	endomembrane system|extracellular region|integral to membrane				ovary(2)	2		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.38e-08)		CTACAGCCACCCAGATAAGAG	0.408													31	78					0	0	1	0	0
PCDH8	5100	broad.mit.edu	37	13	53418996	53418997	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:53418996_53418997CC>TT	uc001vhi.2	-	3	3114_3115	c.2911_2912GG>AA	c.(2911-2913)GGG>AAG	p.G971K	PCDH8_uc001vhj.2_Missense_Mutation_p.G874K	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	971	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		TGCGTTGGGCCCGCTGCAGGAT	0.579													10	39					0	0	1	0	0
PCDH8	5100	broad.mit.edu	37	13	53420603	53420603	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:53420603C>T	uc001vhi.2	-	1	2172	c.1969G>A	c.(1969-1971)GAG>AAG	p.E657K	PCDH8_uc001vhj.2_Missense_Mutation_p.E657K	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	657	Extracellular (Potential).|Cadherin 6.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		TCGCGCGGCTCCTGCTGCTGC	0.711													13	24					0	0	1	0	0
PCDH8	5100	broad.mit.edu	37	13	53420813	53420813	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:53420813G>A	uc001vhi.2	-	1	1962	c.1759C>T	c.(1759-1761)CCT>TCT	p.P587S	PCDH8_uc001vhj.2_Missense_Mutation_p.P587S	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	587	Extracellular (Potential).|Cadherin 5.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		GAAAGCTGAGGGGAGCCGCCG	0.652													4	14					0	0	1	0	0
OLFM4	10562	broad.mit.edu	37	13	53603060	53603060	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:53603060C>T	uc001vhl.2	+	1	89	c.89C>T	c.(88-90)CCC>CTC	p.P30L	OLFM4_uc001vhk.1_Missense_Mutation_p.P30L	NM_006418	NP_006409	Q6UX06	OLFM4_HUMAN	olfactomedin 4 precursor	30					cell adhesion	extracellular space				skin(1)	1		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		CCTCCAATTCCCAGCCCCGGC	0.413													46	191					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58206895	58206895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58206895C>T	uc001vhq.1	+	1	1107	c.215C>T	c.(214-216)CCG>CTG	p.P72L	PCDH17_uc010aec.1_Missense_Mutation_p.P72L	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	72	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		AACTCCGCACCGCACCTGCTG	0.687													12	28					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58207025	58207025	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58207025C>T	uc001vhq.1	+	1	1237	c.345C>T	c.(343-345)ATC>ATT	p.I115I	PCDH17_uc010aec.1_Silent_p.I115I	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	115	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		ACAAGGAGATCTGCATGATCA	0.592													14	26					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58207133	58207133	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58207133C>T	uc001vhq.1	+	1	1345	c.453C>T	c.(451-453)TTC>TTT	p.F151F	PCDH17_uc010aec.1_Silent_p.F151F	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	151	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GCACCCGCTTCCCCCTCACCA	0.617													10	28					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58207590	58207590	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58207590C>T	uc001vhq.1	+	1	1802	c.910C>T	c.(910-912)CGT>TGT	p.R304C	PCDH17_uc010aec.1_Missense_Mutation_p.R304C	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	304	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CGGCCTAATCCGTGTGAAGGG	0.577													18	44					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58207767	58207767	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58207767G>A	uc001vhq.1	+	1	1979	c.1087G>A	c.(1087-1089)GAG>AAG	p.E363K	PCDH17_uc010aec.1_Missense_Mutation_p.E363K	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	363	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GGCGCTGAGCGAGGCCGCCCC	0.672													21	52					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58208270	58208270	+	Silent	SNP	G	A	A	rs151242806	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58208270G>A	uc001vhq.1	+	1	2482	c.1590G>A	c.(1588-1590)ACG>ACA	p.T530T	PCDH17_uc010aec.1_Silent_p.T530T	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	530	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		TGAATCCCACGAACGGGGCCA	0.587													16	66					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58208804	58208804	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58208804C>T	uc001vhq.1	+	1	3016	c.2124C>T	c.(2122-2124)CTC>CTT	p.L708L	PCDH17_uc010aec.1_Silent_p.L708L	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	708	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CGCTGCCGCTCATCGTGACTC	0.592													23	58					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58208835	58208835	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58208835C>T	uc001vhq.1	+	1	3047	c.2155C>T	c.(2155-2157)CTC>TTC	p.L719F	PCDH17_uc010aec.1_Missense_Mutation_p.L719F	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	719	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CTCCATCATCCTCCTAGCGGC	0.607													19	68					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58209029	58209029	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58209029G>A	uc001vhq.1	+	1	3241	c.2349G>A	c.(2347-2349)ATG>ATA	p.M783I	PCDH17_uc010aec.1_Missense_Mutation_p.M783I	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	783	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		TGAACGTCATGAACGTGGTGA	0.587													5	32					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58209161	58209161	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58209161G>A	uc001vhq.1	+	1	3373	c.2481G>A	c.(2479-2481)CAG>CAA	p.Q827Q	PCDH17_uc010aec.1_Silent_p.Q827Q	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	827	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CTGTCCCTCAGGGGCACGCGG	0.602													13	30					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58240849	58240849	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58240849G>A	uc001vhq.1	+	3	3571	c.2679G>A	c.(2677-2679)GGG>GGA	p.G893G	PCDH17_uc010aec.1_Silent_p.G892G|PCDH17_uc001vhr.1_5'UTR	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	893	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GTGGGCACGGGGACAGTGATC	0.448													15	71					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58299207	58299207	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58299207G>A	uc001vhq.1	+	4	4151	c.3259G>A	c.(3259-3261)GAC>AAC	p.D1087N	PCDH17_uc010aec.1_Missense_Mutation_p.D1086N|PCDH17_uc001vhr.1_Missense_Mutation_p.D176N	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1087	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GCAACCAAGAGACCCTCCCTT	0.532													38	102					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58299274	58299274	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58299274G>T	uc001vhq.1	+	4	4218	c.3326G>T	c.(3325-3327)CGG>CTG	p.R1109L	PCDH17_uc010aec.1_Missense_Mutation_p.R1108L|PCDH17_uc001vhr.1_Missense_Mutation_p.R198L	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1109	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		AGAGCCAGCCGGGATTCCAGT	0.517													45	171					3.54561e-26	3.56657e-26	1	1	0
PCDH17	27253	broad.mit.edu	37	13	58299276	58299276	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58299276G>A	uc001vhq.1	+	4	4220	c.3328G>A	c.(3328-3330)GAT>AAT	p.D1110N	PCDH17_uc010aec.1_Missense_Mutation_p.D1109N|PCDH17_uc001vhr.1_Missense_Mutation_p.D199N	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1110	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		AGCCAGCCGGGATTCCAGTGA	0.517													53	168					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58299400	58299400	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58299400G>A	uc001vhq.1	+	4	4344	c.3452G>A	c.(3451-3453)GGA>GAA	p.G1151E	PCDH17_uc010aec.1_Missense_Mutation_p.G1150E|PCDH17_uc001vhr.1_Missense_Mutation_p.G240E	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1151	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GACTGCCGGGGAAACGACCCT	0.448													14	157					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58299405	58299405	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:58299405G>A	uc001vhq.1	+	4	4349	c.3457G>A	c.(3457-3459)GAC>AAC	p.D1153N	PCDH17_uc010aec.1_Missense_Mutation_p.D1152N|PCDH17_uc001vhr.1_Missense_Mutation_p.D242N	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1153	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CCGGGGAAACGACCCTGTGGC	0.448													38	119					0	0	1	0	0
DIAPH3	81624	broad.mit.edu	37	13	60737753	60737753	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:60737753G>A	uc001vht.2	-	1	367	c.148C>T	c.(148-150)CCC>TCC	p.P50S	DIAPH3_uc001vhw.1_Missense_Mutation_p.P50S|DIAPH3_uc010aed.1_Missense_Mutation_p.P50S|DIAPH3_uc010aee.1_Missense_Mutation_p.P50S	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	50					actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		GGCTCCTCGGGGCCACTGGGC	0.711													18	52					0	0	1	0	0
TDRD3	81550	broad.mit.edu	37	13	61102816	61102816	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:61102816C>T	uc001via.2	+	11	1966	c.1178C>T	c.(1177-1179)CCT>CTT	p.P393L	TDRD3_uc010aef.2_Missense_Mutation_p.P218L|TDRD3_uc001vhz.3_Missense_Mutation_p.P393L|TDRD3_uc010aeg.2_Missense_Mutation_p.P486L|TDRD3_uc001vib.3_Missense_Mutation_p.P392L	NM_030794	NP_110421	Q9H7E2	TDRD3_HUMAN	tudor domain containing 3 isoform 2	393					chromatin modification	cytoplasm|nucleus	chromatin binding|methylated histone residue binding|nucleic acid binding|transcription coactivator activity			upper_aerodigestive_tract(1)|skin(1)	2		Prostate(109;0.173)|Breast(118;0.174)		GBM - Glioblastoma multiforme(99;0.000291)		ACTTCATATCCTTTAGGTTCT	0.373													23	91					0	0	1	0	0
PCDH20	64881	broad.mit.edu	37	13	61986905	61986905	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:61986905C>T	uc001vid.3	-	2	1691	c.1327G>A	c.(1327-1329)GAA>AAA	p.E443K	PCDH20_uc010thj.1_Missense_Mutation_p.E443K	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	416	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		GGTTCCAGTTCTTTCAGATAA	0.418													35	103					0	0	1	0	0
PCDH20	64881	broad.mit.edu	37	13	61987410	61987410	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:61987410G>A	uc001vid.3	-	2	1186	c.822C>T	c.(820-822)GTC>GTT	p.V274V	PCDH20_uc010thj.1_Silent_p.V274V	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	247	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		AAGCACCCATGACAATTAGGT	0.527													27	40					0	0	1	0	0
PCDH20	64881	broad.mit.edu	37	13	61988009	61988009	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:61988009C>T	uc001vid.3	-	2	587	c.223G>A	c.(223-225)GGA>AGA	p.G75R	PCDH20_uc010thj.1_Missense_Mutation_p.G75R	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	48	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		GCGGGTAGTCCCTCGTTTAGG	0.652													4	20					0	0	1	0	0
Unknown	0	broad.mit.edu	37	13	64321066	64321066	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:64321066G>A	uc010thk.1	+	1		c.107G>A								Homo sapiens hypothetical LOC647264, mRNA (cDNA clone MGC:189721 IMAGE:9057045), complete cds.																		ctgtggctatggctgtggcta	0													11	29					0	0	1	0	0
PCDH9	5101	broad.mit.edu	37	13	66878844	66878844	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:66878844C>T	uc001vik.2	-	5	4349	c.3657G>A	c.(3655-3657)CTG>CTA	p.L1219L	PCDH9_uc010aei.2_RNA|PCDH9_uc001vil.2_Silent_p.L1185L|PCDH9_uc010thl.1_Silent_p.L1177L	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	1219	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		TATAAGACTTCAGATTTGCCA	0.438													20	65					0	0	1	0	0
PCDH9	5101	broad.mit.edu	37	13	67205501	67205501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:67205501C>T	uc001vik.2	-	4	3873	c.3181G>A	c.(3181-3183)GAA>AAA	p.E1061K	PCDH9_uc010aei.2_RNA|PCDH9_uc001vil.2_Missense_Mutation_p.E1027K|PCDH9_uc010thl.1_Intron	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	1061	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		CTGCAGCTTTCCTGGGAGCCA	0.517													27	40					0	0	1	0	0
PCDH9	5101	broad.mit.edu	37	13	67801997	67801997	+	Silent	SNP	G	A	A	rs138108492	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:67801997G>A	uc001vik.2	-	2	1268	c.576C>T	c.(574-576)ATC>ATT	p.I192I	PCDH9_uc001vil.2_Silent_p.I192I|PCDH9_uc010thl.1_Silent_p.I192I|PCDH9_uc001vin.3_Silent_p.I192I	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	192	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		GAGTTTCCACGATATCCAGTC	0.428													53	166					0	0	1	0	0
KLHL1	57626	broad.mit.edu	37	13	70281924	70281924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:70281924C>T	uc001vip.2	-	10	2814	c.2020G>A	c.(2020-2022)GAT>AAT	p.D674N	KLHL1_uc010thm.1_Missense_Mutation_p.D613N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	674	Kelch 5.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GTTTTGGGATCATATCTAAAA	0.368													13	51					0	0	1	0	0
KLHL1	57626	broad.mit.edu	37	13	70514339	70514339	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:70514339C>T	uc001vip.2	-	4	1641	c.847G>A	c.(847-849)GAG>AAG	p.E283K	KLHL1_uc010thm.1_Missense_Mutation_p.E222K	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	283					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		AGAAGGTTCTCAATGGTGTCC	0.393													13	27					0	0	1	0	0
KLHL1	57626	broad.mit.edu	37	13	70535554	70535554	+	Missense_Mutation	SNP	C	T	T	rs112767369		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:70535554C>T	uc001vip.2	-	3	1497	c.703G>A	c.(703-705)GAC>AAC	p.D235N	KLHL1_uc010thm.1_Missense_Mutation_p.D174N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	235	BTB.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GCAAAATAGTCGGAGACTGAA	0.448													8	64					0	0	1	0	0
KLHL1	57626	broad.mit.edu	37	13	70681510	70681510	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:70681510G>A	uc001vip.2	-	1	1116	c.322C>T	c.(322-324)CCT>TCT	p.P108S	KLHL1_uc010thm.1_Missense_Mutation_p.P108S|ATXN8OS_uc010aej.1_RNA	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	108					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CCCTGCCCAGGAGCCCCTTGC	0.468													27	45					0	0	1	0	0
DACH1	1602	broad.mit.edu	37	13	72049908	72049908	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:72049908C>T	uc010thn.1	-	10	2367	c.1944G>A	c.(1942-1944)ACG>ACA	p.T648T	DACH1_uc010tho.1_Silent_p.T500T|DACH1_uc010thp.1_Silent_p.T446T	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	700	Potential.|Interaction with SIN3A (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		CACGCCGTTTCGTCTCAAACT	0.388													84	196					0	0	1	0	0
DACH1	1602	broad.mit.edu	37	13	72049968	72049968	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:72049968C>T	uc010thn.1	-	10	2307	c.1884G>A	c.(1882-1884)AAG>AAA	p.K628K	DACH1_uc010tho.1_Silent_p.K480K|DACH1_uc010thp.1_Silent_p.K426K	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	680	DACHbox-C.|Potential.|Interaction with SIN3A (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		TCTTTAGCCTCTTTTGAACTA	0.333													26	133					0	0	1	0	0
DACH1	1602	broad.mit.edu	37	13	72063173	72063173	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:72063173G>A	uc010thn.1	-	8	2101	c.1678C>T	c.(1678-1680)CCT>TCT	p.P560S	DACH1_uc010tho.1_Missense_Mutation_p.P412S|DACH1_uc010thp.1_Missense_Mutation_p.P358S	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	612					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AGTCCATCAGGAAACAGAAAA	0.463													47	165					0	0	1	0	0
DIS3	22894	broad.mit.edu	37	13	73346025	73346025	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:73346025G>A	uc001vix.3	-	11	1887	c.1513C>T	c.(1513-1515)CAT>TAT	p.H505Y	DIS3_uc001viy.3_Missense_Mutation_p.H475Y|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	505					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		TCAGCAATATGAACACCAACC	0.333										Multiple Myeloma(4;0.011)			22	104					0	0	1	0	0
KLF5	688	broad.mit.edu	37	13	73636582	73636582	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:73636582C>T	uc001vje.2	+	2	1169	c.845C>T	c.(844-846)CCC>CTC	p.P282L	KLF5_uc001vjd.2_Missense_Mutation_p.P191L	NM_001730	NP_001721	Q13887	KLF5_HUMAN	Kruppel-like factor 5	282					transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|pancreas(1)	3		Prostate(6;0.00187)|Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.0011)		CAGGGCATGCCCCCTTGCACA	0.507													45	74					0	0	1	0	0
KLF5	688	broad.mit.edu	37	13	73636695	73636695	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:73636695C>T	uc001vje.2	+	2	1282	c.958C>T	c.(958-960)CAG>TAG	p.Q320*	KLF5_uc001vjd.2_Nonsense_Mutation_p.Q229*	NM_001730	NP_001721	Q13887	KLF5_HUMAN	Kruppel-like factor 5	320					transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|pancreas(1)	3		Prostate(6;0.00187)|Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.0011)		AGAGATGCTCCAGAATTTAAC	0.473													36	140					0	0	1	0	0
TBC1D4	9882	broad.mit.edu	37	13	75869049	75869049	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:75869049G>A	uc001vjl.1	-	18	3604	c.3257C>T	c.(3256-3258)CCC>CTC	p.P1086L	TBC1D4_uc010tht.1_Missense_Mutation_p.P296L|TBC1D4_uc010thu.1_Missense_Mutation_p.P243L|TBC1D4_uc010aer.2_Missense_Mutation_p.P1078L|TBC1D4_uc010aes.2_Missense_Mutation_p.P1023L	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1086	Rab-GAP TBC.					cytoplasm	Rab GTPase activator activity	p.P1086L(1)		ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GAGGAACCAGGGGGCAGCATA	0.393													18	84					0	0	1	0	0
TBC1D4	9882	broad.mit.edu	37	13	75898440	75898440	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:75898440G>A	uc001vjl.1	-	11	2478	c.2131C>T	c.(2131-2133)CCC>TCC	p.P711S	TBC1D4_uc010aer.2_Missense_Mutation_p.P711S|TBC1D4_uc010aes.2_Intron	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	711	Ser-rich.					cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		AGGAAAGAGGGGGCAGTGAAG	0.453													23	76					0	0	1	0	0
TBC1D4	9882	broad.mit.edu	37	13	75900467	75900468	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:75900467_75900468GG>AA	uc001vjl.1	-	10	2245_2246	c.1898_1899CC>TT	c.(1897-1899)TCC>TTT	p.S633F	TBC1D4_uc010aer.2_Missense_Mutation_p.S633F|TBC1D4_uc010aes.2_Missense_Mutation_p.S633F	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	633						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GAAACTGCGGGGAGTCGGAATC	0.584													16	44					0	0	1	0	0
TBC1D4	9882	broad.mit.edu	37	13	76055823	76055823	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76055823G>A	uc001vjl.1	-	1	428	c.81C>T	c.(79-81)GGC>GGT	p.G27G	TBC1D4_uc010aer.2_Silent_p.G27G|TBC1D4_uc010aes.2_Silent_p.G27G	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	27						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GCTTCCCGGGGCCGGGCTGAG	0.687													6	19					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76381981	76381981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76381981G>A	uc001vjv.2	+	7	1623	c.863G>A	c.(862-864)CGA>CAA	p.R288Q	LMO7_uc010thv.1_Intron|LMO7_uc001vjt.1_Intron|LMO7_uc010thw.1_Intron|LMO7_uc001vjw.1_Missense_Mutation_p.R194Q	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	573						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		ATTGTTCGCCGAATTCCAGCA	0.453													11	125					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76382131	76382131	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76382131G>A	uc001vjv.2	+	7	1773	c.1013G>A	c.(1012-1014)AGT>AAT	p.S338N	LMO7_uc010thv.1_Intron|LMO7_uc001vjt.1_Intron|LMO7_uc010thw.1_Intron|LMO7_uc001vjw.1_Missense_Mutation_p.S244N	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	623						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		AAAGAAAAAAGTAATAGCTGT	0.443													23	52					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76382154	76382154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76382154C>T	uc001vjv.2	+	7	1796	c.1036C>T	c.(1036-1038)CCT>TCT	p.P346S	LMO7_uc010thv.1_Intron|LMO7_uc001vjt.1_Intron|LMO7_uc010thw.1_Intron|LMO7_uc001vjw.1_Missense_Mutation_p.P252S	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	631						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		AATATTAGTTCCTTCATATCG	0.448													7	65					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76395319	76395319	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76395319C>T	uc001vjv.2	+	11	2275	c.1515C>T	c.(1513-1515)TCC>TCT	p.S505S	LMO7_uc010thv.1_Silent_p.S456S|LMO7_uc001vjt.1_Silent_p.S404S|LMO7_uc010thw.1_Silent_p.S355S|LMO7_uc001vjw.1_Silent_p.S411S	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	790						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		TAAGGGAATCCCAAAATCAAA	0.453													12	31					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76395507	76395507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76395507G>A	uc001vjv.2	+	11	2463	c.1703G>A	c.(1702-1704)AGA>AAA	p.R568K	LMO7_uc010thv.1_Missense_Mutation_p.R519K|LMO7_uc001vjt.1_Missense_Mutation_p.R467K|LMO7_uc010thw.1_Missense_Mutation_p.R418K|LMO7_uc001vjw.1_Missense_Mutation_p.R474K	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	853						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		TTTGCAAAAAGAGAGGACCGT	0.443													36	90					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76395539	76395539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76395539C>T	uc001vjv.2	+	11	2495	c.1735C>T	c.(1735-1737)CCT>TCT	p.P579S	LMO7_uc010thv.1_Missense_Mutation_p.P530S|LMO7_uc001vjt.1_Missense_Mutation_p.P478S|LMO7_uc010thw.1_Missense_Mutation_p.P429S|LMO7_uc001vjw.1_Missense_Mutation_p.P485S	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	864						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		AATTCAGCTTCCTTCTCAAAG	0.443													8	128					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76397896	76397896	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76397896C>T	uc001vjv.2	+	12	2897	c.2137C>T	c.(2137-2139)CAA>TAA	p.Q713*	LMO7_uc010thv.1_Nonsense_Mutation_p.Q664*|LMO7_uc001vjt.1_Nonsense_Mutation_p.Q612*|LMO7_uc010thw.1_Nonsense_Mutation_p.Q563*|LMO7_uc001vjw.1_Nonsense_Mutation_p.Q619*	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	998						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		ATCTCTTTCCCAAGACCAGGC	0.478													25	59					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76397922	76397922	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76397922C>T	uc001vjv.2	+	12	2923	c.2163C>T	c.(2161-2163)GCC>GCT	p.A721A	LMO7_uc010thv.1_Silent_p.A672A|LMO7_uc001vjt.1_Silent_p.A620A|LMO7_uc010thw.1_Silent_p.A571A|LMO7_uc001vjw.1_Silent_p.A627A	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1006						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		CTTCTAAAGCCACATTGTCTT	0.473													8	71					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76412312	76412312	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76412312G>A	uc001vjv.2	+	17	3492	c.2732G>A	c.(2731-2733)CGA>CAA	p.R911Q	LMO7_uc010thv.1_Missense_Mutation_p.R862Q|LMO7_uc001vjt.1_Missense_Mutation_p.R810Q|LMO7_uc010thw.1_Missense_Mutation_p.R788Q|LMO7_uc001vjw.1_Missense_Mutation_p.R817Q	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1196						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		TTAAAAAGGCGATCACAATTT	0.338													9	40					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76414572	76414572	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76414572C>T	uc001vjv.2	+	19	3584	c.2824C>T	c.(2824-2826)CAA>TAA	p.Q942*	LMO7_uc010thv.1_Nonsense_Mutation_p.Q893*|LMO7_uc001vjt.1_Nonsense_Mutation_p.Q841*|LMO7_uc010thw.1_Nonsense_Mutation_p.Q819*|LMO7_uc001vjw.1_Nonsense_Mutation_p.Q848*	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1227						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		GGTGTGGGATCAAGAGGAGGA	0.527													14	32					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76417042	76417042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76417042C>T	uc001vjv.2	+	22	4148	c.3388C>T	c.(3388-3390)CCT>TCT	p.P1130S	LMO7_uc010thv.1_Missense_Mutation_p.P1081S|LMO7_uc001vjt.1_Missense_Mutation_p.P1029S|LMO7_uc010thw.1_Missense_Mutation_p.P1007S|LMO7_uc001vjw.1_Missense_Mutation_p.P1036S	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1415						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		AGGTTTTCTTCCTGGTGACAG	0.328													35	85					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76427474	76427474	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:76427474G>A	uc001vjv.2	+	25	4672	c.3912G>A	c.(3910-3912)CCG>CCA	p.P1304P	LMO7_uc010thv.1_Silent_p.P1255P|LMO7_uc010thw.1_Silent_p.P1181P	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1589						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		CCCCCACCCCGAGAAGCCATT	0.577													17	72					0	0	1	0	0
BTF3L1	690	broad.mit.edu	37	13	77502816	77502816	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:77502816C>T	uc001vkb.3	+	1		c.232C>T				NR_026983				Homo sapiens basic transcription factor 3, like 1, mRNA (cDNA clone IMAGE:40013884).												0						GATCATAAACCAGTGCTGCAG	0.488													15	46					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77642739	77642739	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:77642739G>A	uc001vkf.2	-	71	12109	c.12018C>T	c.(12016-12018)TTC>TTT	p.F4006F	MYCBP2_uc010aev.2_Silent_p.F3410F|MYCBP2_uc001vke.2_Silent_p.F623F	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4006					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GAAGCAGCGAGAAGAGATCCT	0.473													10	28					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77748454	77748454	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:77748454G>A	uc001vkf.2	-	38	5620	c.5529C>T	c.(5527-5529)CTC>CTT	p.L1843L	MYCBP2_uc010aev.2_Silent_p.L1247L	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1843					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		ACCTATAGTAGAGTATCTGTG	0.433													20	83					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77779516	77779516	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:77779516G>A	uc001vkf.2	-	27	3695	c.3604C>T	c.(3604-3606)CAT>TAT	p.H1202Y	MYCBP2_uc010aev.2_Missense_Mutation_p.H606Y	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CCTCCTCCATGACCTAGAATA	0.368													31	63					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77799640	77799640	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:77799640G>A	uc001vkf.2	-	20	2764	c.2673C>T	c.(2671-2673)TAC>TAT	p.Y891Y	MYCBP2_uc010aev.2_Silent_p.Y295Y	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	891	RCC1 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		AGCCTGGAGGGTATGTTGTGA	0.443													38	84					0	0	1	0	0
SLAIN1	122060	broad.mit.edu	37	13	78335025	78335025	+	Nonsense_Mutation	SNP	C	T	T	rs142633526		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:78335025C>T	uc010thy.1	+	6	1028	c.985C>T	c.(985-987)CGA>TGA	p.R329*	SLAIN1_uc001vkk.1_Nonsense_Mutation_p.R252*|SLAIN1_uc001vkl.1_Nonsense_Mutation_p.R208*|SLAIN1_uc010thz.1_Nonsense_Mutation_p.R207*|SLAIN1_uc010aex.1_Nonsense_Mutation_p.R94*|SLAIN1_uc010aey.1_Nonsense_Mutation_p.R94*|SLAIN1_uc001vkm.2_Nonsense_Mutation_p.R208*	NM_144595	NP_653196	Q8ND83	SLAI1_HUMAN	SLAIN motif family, member 1 B	471								p.R252*(1)		ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0853)		AGTGTCTATCCGACAGCCTCT	0.478													37	109					0	0	1	0	0
RNF219	79596	broad.mit.edu	37	13	79190701	79190701	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:79190701G>A	uc001vkw.1	-	6	1254	c.1195C>T	c.(1195-1197)CAG>TAG	p.Q399*	uc001vku.1_RNA|RNF219_uc010afb.1_Nonsense_Mutation_p.Q209*|RNF219_uc010afc.2_Intron	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	399							zinc ion binding	p.Q399E(1)		large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		GTACTGAGCTGAAGGCAACTA	0.423													43	132					0	0	1	0	0
SPRY2	10253	broad.mit.edu	37	13	80911411	80911411	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:80911411G>A	uc001vli.2	-	2	1408	c.430C>T	c.(430-432)CCT>TCT	p.P144S	SPRY2_uc001vlj.2_Missense_Mutation_p.P144S	NM_005842	NP_005833	O43597	SPY2_HUMAN	sprouty 2	144					epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of ERK1 and ERK2 cascade|positive regulation of gene expression|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein kinase B signaling cascade	cytosol|microtubule|ruffle membrane	protein serine/threonine kinase activator activity			ovary(1)|lung(1)	2	Medulloblastoma(90;0.18)	Acute lymphoblastic leukemia(28;0.218)|Breast(118;0.244)		GBM - Glioblastoma multiforme(99;0.0318)		TCAGCAACAGGCCCGGAGGAG	0.562													21	57					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453654	84453654	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:84453654G>A	uc001vlk.2	-	1	2875	c.1989C>T	c.(1987-1989)TCC>TCT	p.S663S		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	663	Cytoplasmic (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CTGTCTGTAGGGAATTAATCT	0.557													5	34					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454371	84454371	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:84454371G>A	uc001vlk.2	-	1	2158	c.1272C>T	c.(1270-1272)GAC>GAT	p.D424D		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	424	LRR 9.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GCCACCTGAGGTCCAAAAGGT	0.468													28	260					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454440	84454440	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:84454440G>A	uc001vlk.2	-	1	2089	c.1203C>T	c.(1201-1203)CTC>CTT	p.L401L		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	401	Extracellular (Potential).|LRR 8.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CCAACAGAATGAGGTTCTTGT	0.438													92	267					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454619	84454619	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:84454619G>A	uc001vlk.2	-	1	1910	c.1024C>T	c.(1024-1026)CCT>TCT	p.P342S		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	342	Extracellular (Potential).|LRRNT 2.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CAGCCCCCAGGGCAGGGTAAA	0.537													8	103					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454751	84454751	+	Missense_Mutation	SNP	G	A	A	rs146746846		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:84454751G>A	uc001vlk.2	-	1	1778	c.892C>T	c.(892-894)CAT>TAT	p.H298Y		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	298	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GGTGTGGCATGATCCTCTTGC	0.562													16	47					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455093	84455093	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:84455093G>A	uc001vlk.2	-	1	1436	c.550C>T	c.(550-552)CTC>TTC	p.L184F		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	184	Extracellular (Potential).|LRR 6.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TTACCCCGGAGGTCGAGGTGG	0.532													33	70					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455121	84455121	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:84455121G>A	uc001vlk.2	-	1	1408	c.522C>T	c.(520-522)TTC>TTT	p.F174F		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	174	Extracellular (Potential).|LRR 5.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GCACATACTGGAACACGTTGG	0.527													25	79					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455470	84455470	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:84455470G>A	uc001vlk.2	-	1	1059	c.173C>T	c.(172-174)TCC>TTC	p.S58F		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	58	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GTAAAACTGGGAAGTCGGGGC	0.433													17	78					0	0	1	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368424	86368424	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:86368424C>T	uc001vll.1	-	2	2679	c.2220G>A	c.(2218-2220)ACG>ACA	p.T740T	SLITRK6_uc010afe.1_Silent_p.T193T	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	740	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TTGATTGGTTCGTGGTTTTGT	0.368													85	302					0	0	1	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368848	86368848	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:86368848C>T	uc001vll.1	-	2	2255	c.1796G>A	c.(1795-1797)CGA>CAA	p.R599Q	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	599	Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CGTAAGAGATCGTAAAATAGT	0.418													38	119					0	0	1	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370031	86370031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:86370031C>T	uc001vll.1	-	2	1072	c.613G>A	c.(613-615)GAA>AAA	p.E205K	SLITRK6_uc010afe.1_5'UTR	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	205	Extracellular (Potential).|LRR 5.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CCAATGTGTTCGAGAAAACCA	0.403													24	120					0	0	1	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370307	86370307	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:86370307G>A	uc001vll.1	-	2	796	c.337C>T	c.(337-339)CTC>TTC	p.L113F	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	113	Extracellular (Potential).|LRR 2.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TGTTTCAGGAGGCCAAGGCCA	0.363													50	89					0	0	1	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370529	86370529	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:86370529C>T	uc001vll.1	-	2	574	c.115G>A	c.(115-117)GAA>AAA	p.E39K	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	39	LRRNT 1.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CCATCTTTTTCCTCACAATTG	0.393													31	130					0	0	1	0	0
SLITRK5	26050	broad.mit.edu	37	13	88328747	88328747	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:88328747C>T	uc001vln.2	+	2	1323	c.1104C>T	c.(1102-1104)TCC>TCT	p.S368S	SLITRK5_uc010tic.1_Silent_p.S127S	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	368	Extracellular (Potential).|LRRNT.					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					AGACCAAATCCCCGGTGCCTT	0.597													15	65					0	0	1	0	0
SLITRK5	26050	broad.mit.edu	37	13	88328875	88328875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:88328875C>T	uc001vln.2	+	2	1451	c.1232C>T	c.(1231-1233)CCC>CTC	p.P411L	SLITRK5_uc010tic.1_Missense_Mutation_p.P170L	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	411	LRR 7.|Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CCCTACAATCCCAAGAAAATG	0.557													10	25					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92345534	92345534	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:92345534C>T	uc010tif.1	+	3	785	c.419C>T	c.(418-420)TCG>TTG	p.S140L		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	140						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				GCTGCTGCTTCGGTTCAGGAG	0.408													94	105					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92345675	92345675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:92345675C>T	uc010tif.1	+	3	926	c.560C>T	c.(559-561)TCC>TTC	p.S187F		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	187						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				ACTGACAGTTCCCTGGAATAC	0.473													85	114					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92346066	92346066	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:92346066G>A	uc010tif.1	+	3	1317	c.951G>A	c.(949-951)CTG>CTA	p.L317L		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	317						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				ACGTGCTGCTGAACTTTCACT	0.453													32	111					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92560267	92560267	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:92560267C>T	uc010tif.1	+	6	1723	c.1357C>T	c.(1357-1359)CCT>TCT	p.P453S		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	453						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				AGGAATTGATCCTGTGATAAA	0.353													16	63					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92797198	92797198	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:92797198G>A	uc010tif.1	+	7	1883	c.1517G>A	c.(1516-1518)GGA>GAA	p.G506E		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	506						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				GGTTGCGGGGGATCAGGAAGT	0.433													47	66					0	0	1	0	0
GPC6	10082	broad.mit.edu	37	13	93879776	93879776	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:93879776G>A	uc001vlt.2	+	1	699	c.67G>A	c.(67-69)GCG>ACG	p.A23T	GPC6_uc010tig.1_Missense_Mutation_p.A23T	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	23						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				CCCCGCCGGGGCGGATGTGAA	0.627											OREG0022460	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	53					0	0	1	0	0
CLDN10	9071	broad.mit.edu	37	13	96205054	96205054	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:96205054C>T	uc001vmh.2	+	1	108	c.47C>T	c.(46-48)TCA>TTA	p.S16L	CLDN10_uc001vmg.2_Intron|CLDN10_uc010tii.1_Intron	NM_006984	NP_008915	P78369	CLD10_HUMAN	claudin 10 isoform b	16	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.18)			GTCTCCATCTCAGGCTGGGTA	0.652													12	33					0	0	1	0	0
DZIP1	22873	broad.mit.edu	37	13	96239829	96239829	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:96239829C>T	uc001vmk.2	-	20	3034	c.2182G>A	c.(2182-2184)GAA>AAA	p.E728K	DZIP1_uc001vmi.2_5'UTR|DZIP1_uc001vmj.2_Missense_Mutation_p.E204K|DZIP1_uc001vml.2_Missense_Mutation_p.E709K	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	728					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			TCCTCGATTTCGCTTCCCTCG	0.547													39	98					0	0	1	0	0
DZIP1	22873	broad.mit.edu	37	13	96239919	96239919	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:96239919G>A	uc001vmk.2	-	20	2944	c.2092C>T	c.(2092-2094)CCA>TCA	p.P698S	DZIP1_uc001vmi.2_5'UTR|DZIP1_uc001vmj.2_Missense_Mutation_p.P174S|DZIP1_uc001vml.2_Missense_Mutation_p.P679S	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	698					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			AGTGGGCCTGGGGATGCGTAT	0.572													18	44					0	0	1	0	0
DZIP1	22873	broad.mit.edu	37	13	96264406	96264406	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:96264406C>T	uc001vmk.2	-	11	2051	c.1199G>A	c.(1198-1200)CGA>CAA	p.R400Q	DZIP1_uc001vml.2_Missense_Mutation_p.R400Q	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	400					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			cattgAGGTTCGAAGTTTCTC	0.289													25	71					0	0	1	0	0
DNAJC3	5611	broad.mit.edu	37	13	96361519	96361519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:96361519C>T	uc001vmq.2	+	2	229	c.121C>T	c.(121-123)CTT>TTT	p.L41F	DNAJC3_uc001vmp.2_Missense_Mutation_p.L41F|DNAJC3_uc001vmr.2_Missense_Mutation_p.L41F	NM_006260	NP_006251	Q13217	DNJC3_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 3	41	TPR 1.				protein folding|response to unfolded protein|response to virus		heat shock protein binding|protein kinase inhibitor activity|unfolded protein binding				0	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.126)			TGAGAAACATCTTGAATTGGG	0.348													24	78					0	0	1	0	0
UGGT2	55757	broad.mit.edu	37	13	96555182	96555182	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:96555182G>A	uc001vmt.2	-	21	2598	c.2428C>T	c.(2428-2430)CTT>TTT	p.L810F		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	810					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						AGTTGCCCAAGAAAGCTTCTC	0.318													13	124					0	0	1	0	0
HS6ST3	266722	broad.mit.edu	37	13	97484836	97484836	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:97484836C>T	uc001vmw.2	+	2	824	c.800C>T	c.(799-801)TCT>TTT	p.S267F		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	267	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					TGGAAAACCTCTCTTCATATG	0.507													16	45					0	0	1	0	0
HS6ST3	266722	broad.mit.edu	37	13	97484999	97484999	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:97484999C>T	uc001vmw.2	+	2	987	c.963C>T	c.(961-963)GGC>GGT	p.G321G		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	321	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					GCCTGGTGGGCTGCTATAACT	0.512													29	71					0	0	1	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485045	97485045	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:97485045C>T	uc001vmw.2	+	2	1033	c.1009C>T	c.(1009-1011)CTG>TTG	p.L337L		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	337	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					AAACACCATCCTGTTGCAGAG	0.488													32	94					0	0	1	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485093	97485093	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:97485093C>T	uc001vmw.2	+	2	1081	c.1057C>T	c.(1057-1059)CTC>TTC	p.L353F		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	353	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					CTTCTTTGGGCTCACTGAGTT	0.463													31	79					0	0	1	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485261	97485261	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:97485261G>A	uc001vmw.2	+	2	1249	c.1225G>A	c.(1225-1227)GAG>AAG	p.E409K		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	409	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					GCAGCTTTACGAGTATGCAAA	0.572													38	98					0	0	1	0	0
OXGR1	27199	broad.mit.edu	37	13	97639219	97639219	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:97639219G>A	uc001vmx.1	-	4	1039	c.795C>T	c.(793-795)ATC>ATT	p.I265I	OXGR1_uc010afr.1_Silent_p.I265I	NM_080818	NP_543008	Q96P68	OXGR1_HUMAN	oxoglutarate (alpha-ketoglutarate) receptor 1	265	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.186)			GGCGAGATTCGATCCGAATGA	0.433													20	69					0	0	1	0	0
IPO5	3843	broad.mit.edu	37	13	98666301	98666301	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:98666301C>T	uc001vne.2	+	22	2392	c.2212C>T	c.(2212-2214)CGA>TGA	p.R738*		NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	720					interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						GAAACGTGTTCGAGTGGCAGC	0.433													38	120					0	0	1	0	0
SLC15A1	6564	broad.mit.edu	37	13	99378490	99378490	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:99378490G>A	uc001vno.2	-	4	209	c.132C>T	c.(130-132)TTC>TTT	p.F44F	SLC15A1_uc001vnp.1_Silent_p.F12F	NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	44	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	CCCAGCTGATGAAATTTGTGA	0.522													20	61					0	0	1	0	0
GPR183	1880	broad.mit.edu	37	13	99947438	99947438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:99947438C>T	uc001vog.2	-	2	1136	c.962G>A	c.(961-963)AGG>AAG	p.R321K	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron	NM_004951	NP_004942	P32249	GP183_HUMAN	EBV-induced G protein-coupled receptor 2	321	Cytoplasmic (Potential).				humoral immune response|mature B cell differentiation involved in immune response	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0						TTTCAGCATCCTCATAACCTT	0.403													15	94					0	0	1	0	0
GPR183	1880	broad.mit.edu	37	13	99948140	99948140	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:99948140C>T	uc001vog.2	-	2	434	c.260G>A	c.(259-261)CGA>CAA	p.R87Q	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron	NM_004951	NP_004942	P32249	GP183_HUMAN	EBV-induced G protein-coupled receptor 2	87	Helical; Name=2; (Potential).				humoral immune response|mature B cell differentiation involved in immune response	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0						GTAGGCTATTCGTGTAGGCAA	0.408													40	81					0	0	1	0	0
UBAC2	337867	broad.mit.edu	37	13	99992680	99992680	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:99992680C>T	uc001voa.3	+	7	1152	c.668C>T	c.(667-669)TCT>TTT	p.S223F	UBAC2_uc010tiu.1_Missense_Mutation_p.S245F|UBAC2_uc001vob.3_Missense_Mutation_p.S196F|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Missense_Mutation_p.S110F|UBAC2_uc001voc.2_Missense_Mutation_p.S188F|UBAC2_uc010tiw.1_RNA|UBAC2_uc001voh.2_Missense_Mutation_p.S27F	NM_001144072	NP_001137544	Q8NBM4	UBAC2_HUMAN	UBA domain containing 2 isoform 1	223	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CCCATCTTCTCTTCTTCAGAA	0.532													12	109					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101710325	101710325	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:101710325G>A	uc001vox.1	-	43	5178	c.4989C>T	c.(4987-4989)CCC>CCT	p.P1663P		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1663	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ATTTCCTCTGGGGTTTCCCTG	0.562													18	62					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101720309	101720309	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:101720309G>A	uc001vox.1	-	39	4596	c.4407C>T	c.(4405-4407)CAC>CAT	p.H1469H		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1469	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TTATTTGAAAGTGGCGAAGAT	0.363													17	53					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101748028	101748028	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:101748028C>T	uc001vox.1	-	28	3355	c.3166G>A	c.(3166-3168)GAT>AAT	p.D1056N		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1056	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CCATTGCAATCTTCCTAAAGT	0.388													21	60					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101759873	101759873	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:101759873G>A	uc001vox.1	-	22	2733	c.2544C>T	c.(2542-2544)AAC>AAT	p.N848N		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	848	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CCCGGCAAAAGTTTCTGAACC	0.502													18	93					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101776985	101776985	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:101776985C>T	uc001vox.1	-	18	2355	c.2166G>A	c.(2164-2166)AAG>AAA	p.K722K		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	722	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CTGCGGTCTCCTTTTCCAGAA	0.323													57	109					0	0	1	0	0
ITGBL1	9358	broad.mit.edu	37	13	102250508	102250508	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:102250508G>A	uc001vpb.2	+	7	1093	c.874G>A	c.(874-876)GGA>AGA	p.G292R	ITGBL1_uc010agb.2_Missense_Mutation_p.G243R|ITGBL1_uc001vpc.3_Missense_Mutation_p.G151R	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	292	VI.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TGAAGGTCATGGACAGTGTAA	0.428													26	81					0	0	1	0	0
FGF14	2259	broad.mit.edu	37	13	102378965	102378965	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:102378965C>T	uc001vpe.2	-	4	604	c.604G>A	c.(604-606)GAA>AAA	p.E202K	FGF14_uc001vpf.2_Missense_Mutation_p.E207K	NM_004115	NP_004106	Q92915	FGF14_HUMAN	fibroblast growth factor 14 isoform 1A	202					cell death|cell-cell signaling|JNK cascade|nervous system development|signal transduction	nucleus	growth factor activity|heparin binding			ovary(2)|lung(1)|large_intestine(1)	4	all_neural(89;0.0239)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TACTCACCTTCCAATGGCTTG	0.308													12	121					0	0	1	0	0
TPP2	7174	broad.mit.edu	37	13	103326685	103326685	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:103326685T>A	uc001vpi.3	+	27	3488	c.3385T>A	c.(3385-3387)TGT>AGT	p.C1129S		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	1129					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TAGGAAAGGTTGTGCCCTGGC	0.433													25	59					0	0	1	0	0
C13orf39	196541	broad.mit.edu	37	13	103339317	103339317	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:103339317G>A	uc001vpj.2	-	3	379	c.373C>T	c.(373-375)CTT>TTT	p.L125F	C13orf39_uc001vpk.2_Missense_Mutation_p.L125F	NM_001010977	NP_001010977	Q5VZV1	MT21C_HUMAN	hypothetical protein LOC196541	125							methyltransferase activity				0						ATGGAAACAAGGCCTGGTCCG	0.353													18	64					0	0	1	0	0
C13orf39	196541	broad.mit.edu	37	13	103343261	103343261	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:103343261C>T	uc001vpj.2	-	2	190	c.184G>A	c.(184-186)GAT>AAT	p.D62N	C13orf39_uc001vpk.2_Missense_Mutation_p.D62N	NM_001010977	NP_001010977	Q5VZV1	MT21C_HUMAN	hypothetical protein LOC196541	62							methyltransferase activity				0						CTGGCGTAATCTGTAGGAACA	0.438													8	104					0	0	1	0	0
KDELC1	79070	broad.mit.edu	37	13	103443710	103443710	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:103443710G>A	uc001vpq.3	-	5	1127	c.743C>T	c.(742-744)TCA>TTA	p.S248L	KDELC1_uc001vpr.3_Missense_Mutation_p.S29L	NM_024089	NP_076994	Q6UW63	KDEL1_HUMAN	KDEL (Lys-Asp-Glu-Leu) containing 1 precursor	248						endoplasmic reticulum lumen				ovary(1)	1	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ATGGATGTTTGAATTGGATTT	0.428													140	261					0	0	1	0	0
ERCC5	2073	broad.mit.edu	37	13	103510682	103510682	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:103510682C>T	uc001vpw.2	+	6	1029	c.586C>T	c.(586-588)CTG>TTG	p.L196L	ERCC5_uc001vpu.1_Silent_p.L650L|ERCC5_uc010tjb.1_Silent_p.L196L|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Silent_p.L28L	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	196					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTTCAGCAGCCTGCCCCCTGA	0.388			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				41	87					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103698508	103698508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:103698508C>T	uc001vpy.3	-	6	1619	c.1022G>A	c.(1021-1023)GGA>GAA	p.G341E		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	341	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TTGAAATCCTCCATTTGCCTT	0.363													30	80					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103701746	103701746	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:103701746G>A	uc001vpy.3	-	5	1409	c.812C>T	c.(811-813)TCC>TTC	p.S271F		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	271	Extracellular (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					AACGATGGTGGAACATAGCTG	0.463													23	72					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103705025	103705025	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:103705025G>A	uc001vpy.3	-	3	1127	c.530C>T	c.(529-531)TCC>TTC	p.S177F		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	177	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CATTCCAATGGAAACAGGAAC	0.388													25	67					0	0	1	0	0
ARGLU1	55082	broad.mit.edu	37	13	107220265	107220265	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:107220265C>A	uc001vqk.3	-	1	250	c.3G>T	c.(1-3)ATG>ATT	p.M1I		NM_018011	NP_060481	Q9NWB6	ARGL1_HUMAN	arginine and glutamate rich 1	1											0	Lung NSC(43;0.015)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					GAGACCGGCCCATCCTTCCGG	0.697													10	34					0.000978159	0.000979089	1	1	0
FAM155A	728215	broad.mit.edu	37	13	107823108	107823108	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:107823108C>T	uc001vql.2	-	3	1630	c.1114G>A	c.(1114-1116)GAT>AAT	p.D372N		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	372						integral to membrane	binding			skin(1)	1						TCTGGTTCATCATTGGTTAGA	0.443													16	43					0	0	1	0	0
FAM155A	728215	broad.mit.edu	37	13	108518107	108518107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:108518107C>T	uc001vql.2	-	1	1354	c.838G>A	c.(838-840)GAA>AAA	p.E280K		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	280						integral to membrane	binding			skin(1)	1						TCAAACTCTTCGTATTTCTCC	0.527													41	82					0	0	1	0	0
FAM155A	728215	broad.mit.edu	37	13	108518795	108518795	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:108518795G>A	uc001vql.2	-	1	666	c.150C>T	c.(148-150)GTC>GTT	p.V50V		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	50	Helical; (Potential).					integral to membrane	binding			skin(1)	1						CAGAGAGCAGGACTGTGAAAA	0.463													48	135					0	0	1	0	0
LIG4	3981	broad.mit.edu	37	13	108861132	108861132	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:108861132G>A	uc001vqn.2	-	2	2758	c.2485C>T	c.(2485-2487)CTG>TTG	p.L829L	LIG4_uc001vqo.2_Silent_p.L829L|LIG4_uc010agg.1_Silent_p.L762L|LIG4_uc010agf.2_Silent_p.L829L|LIG4_uc001vqp.2_Silent_p.L829L	NM_002312	NP_002303	P49917	DNLI4_HUMAN	DNA ligase IV	829	BRCT 2.				cell cycle|cell division|cell proliferation|central nervous system development|chromosome organization|DNA ligation involved in DNA recombination|DNA ligation involved in DNA repair|DNA replication|double-strand break repair via nonhomologous end joining|in utero embryonic development|initiation of viral infection|isotype switching|negative regulation of neuron apoptosis|neuron apoptosis|nucleotide-excision repair, DNA gap filling|positive regulation of fibroblast proliferation|positive regulation of neurogenesis|pro-B cell differentiation|provirus integration|response to gamma radiation|response to X-ray|single strand break repair|somatic stem cell maintenance|T cell differentiation in thymus|T cell receptor V(D)J recombination	condensed chromosome|cytoplasm|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|focal adhesion|nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding|protein C-terminus binding				0	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					TTGGTACTCAGGTCATTAATA	0.428								NHEJ					18	79					0	0	1	0	0
LIG4	3981	broad.mit.edu	37	13	108863374	108863374	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:108863374G>A	uc001vqn.2	-	2	516	c.243C>T	c.(241-243)GCC>GCT	p.A81A	LIG4_uc001vqo.2_Silent_p.A81A|LIG4_uc010agg.1_Silent_p.A14A|LIG4_uc010agf.2_Silent_p.A81A|LIG4_uc001vqp.2_Silent_p.A81A	NM_002312	NP_002303	P49917	DNLI4_HUMAN	DNA ligase IV	81					cell cycle|cell division|cell proliferation|central nervous system development|chromosome organization|DNA ligation involved in DNA recombination|DNA ligation involved in DNA repair|DNA replication|double-strand break repair via nonhomologous end joining|in utero embryonic development|initiation of viral infection|isotype switching|negative regulation of neuron apoptosis|neuron apoptosis|nucleotide-excision repair, DNA gap filling|positive regulation of fibroblast proliferation|positive regulation of neurogenesis|pro-B cell differentiation|provirus integration|response to gamma radiation|response to X-ray|single strand break repair|somatic stem cell maintenance|T cell differentiation in thymus|T cell receptor V(D)J recombination	condensed chromosome|cytoplasm|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|focal adhesion|nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding|protein C-terminus binding				0	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					TAATTCCATAGGCCATTCTCT	0.353								NHEJ					38	125					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109318451	109318451	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:109318451C>T	uc001vqt.1	+	2	306	c.180C>T	c.(178-180)CTC>CTT	p.L60L	MYO16_uc010agk.1_Silent_p.L82L	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	60	ANK 1.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			ACTTCAACCTCACGGACATGC	0.433													8	24					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109365066	109365066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:109365066C>T	uc001vqt.1	+	3	410	c.284C>T	c.(283-285)TCC>TTC	p.S95F	MYO16_uc010agk.1_Missense_Mutation_p.S117F	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	95	ANK 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TCGGGAGGGTCCCTGCTCCAT	0.562													36	95					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109672146	109672146	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:109672146C>T	uc001vqt.1	+	23	2743	c.2617C>T	c.(2617-2619)CTC>TTC	p.L873F	MYO16_uc010agk.1_Missense_Mutation_p.L895F|MYO16_uc001vqu.1_Missense_Mutation_p.L673F|MYO16_uc010tjh.1_Missense_Mutation_p.L385F	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	873	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			ACTACAAAGTCTCCTAGAATC	0.423													11	49					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109704794	109704794	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:109704794G>A	uc001vqt.1	+	25	3079	c.2953G>A	c.(2953-2955)GAA>AAA	p.E985K	MYO16_uc010agk.1_Missense_Mutation_p.E1007K|MYO16_uc001vqu.1_Missense_Mutation_p.E785K|MYO16_uc010tjh.1_Missense_Mutation_p.E497K	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	985	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			AATTATTGGAGAAAACAAGAA	0.313													27	69					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109707875	109707875	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:109707875C>T	uc001vqt.1	+	27	3327	c.3201C>T	c.(3199-3201)GTC>GTT	p.V1067V	MYO16_uc010agk.1_Silent_p.V1089V|MYO16_uc001vqu.1_Silent_p.V867V|MYO16_uc010tjh.1_Silent_p.V579V	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1067	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			ATATTGGGGTCCTGGAGATGG	0.428													31	121					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109707915	109707915	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:109707915C>T	uc001vqt.1	+	27	3367	c.3241C>T	c.(3241-3243)CGC>TGC	p.R1081C	MYO16_uc010agk.1_Missense_Mutation_p.R1103C|MYO16_uc001vqu.1_Missense_Mutation_p.R881C|MYO16_uc010tjh.1_Missense_Mutation_p.R593C	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1081	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			ATACCCTGTTCGCCTTTCCTT	0.433													29	132					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109779736	109779736	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:109779736C>T	uc001vqt.1	+	31	3949	c.3823C>T	c.(3823-3825)CCT>TCT	p.P1275S	MYO16_uc010agk.1_Missense_Mutation_p.P1297S|MYO16_uc010tjh.1_Missense_Mutation_p.P787S	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1275					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CATCTGGTCTCCTTCGCTGCA	0.642													9	18					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109793637	109793637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:109793637C>T	uc001vqt.1	+	32	5137	c.5011C>T	c.(5011-5013)CCC>TCC	p.P1671S	MYO16_uc010agk.1_Missense_Mutation_p.P1693S	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1671	Pro-rich.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TCTCAGCAGCCCCCTGGACGA	0.672													7	16					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109817360	109817360	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:109817360C>T	uc001vqt.1	+	33	5336	c.5210C>T	c.(5209-5211)TCA>TTA	p.S1737L	MYO16_uc010agk.1_Missense_Mutation_p.S1759L	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1737					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TTATCTAATTCACTATCTAGT	0.348													14	32					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110804801	110804801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110804801G>A	uc001vqw.3	-	51	4930	c.4808C>T	c.(4807-4809)TCC>TTC	p.S1603F	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1603	Collagen IV NC1.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CTCCAGGCAGGAGCCGGGGGA	0.597													15	37					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110819517	110819517	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110819517G>A	uc001vqw.3	-	44	4059	c.3937C>T	c.(3937-3939)CCA>TCA	p.P1313S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1313	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TGAAATCCTGGAACTCCTGGA	0.527													54	160					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110821999	110821999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110821999C>T	uc001vqw.3	-	43	3975	c.3853G>A	c.(3853-3855)GAC>AAC	p.D1285N	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1285	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			AATCCAGGGTCTCCCTTGGGC	0.468													8	120					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110826298	110826298	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110826298C>T	uc001vqw.3	-	40	3576	c.3454G>A	c.(3454-3456)GAG>AAG	p.E1152K	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1152	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CTGCCTGGCTCCCCTTTCTGG	0.587													15	43					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110826801	110826801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110826801C>T	uc001vqw.3	-	39	3520	c.3398G>A	c.(3397-3399)GGA>GAA	p.G1133E	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1133	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			ACCTGCTTCTCCTTTGACACC	0.537													16	41					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110826853	110826853	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110826853C>T	uc001vqw.3	-	39	3468	c.3346G>A	c.(3346-3348)GAA>AAA	p.E1116K	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1116	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TCACCTTTTTCTCCAGGTAGC	0.483													20	39					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110829374	110829374	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110829374G>A	uc001vqw.3	-	34	2849	c.2727C>T	c.(2725-2727)GGC>GGT	p.G909G	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	909	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			AGCCCGGAAAGCCATGGTCCC	0.592													18	49					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110830538	110830538	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110830538G>A	uc001vqw.3	-	32	2621	c.2499C>T	c.(2497-2499)TTC>TTT	p.F833F	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	833	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCAGTCCAGGGAATCCGGGGA	0.522													28	93					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110831287	110831287	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110831287C>T	uc001vqw.3	-	31	2563	c.2441G>A	c.(2440-2442)GGA>GAA	p.G814E	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	814	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCCCGGTGGTCCCTGTCCTCC	0.587													8	13					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110831353	110831353	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110831353G>A	uc001vqw.3	-	31	2497	c.2375C>T	c.(2374-2376)TCC>TTC	p.S792F	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	792	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			AGACCCCACGGAGCCTGGCAA	0.607													3	11					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110831646	110831646	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110831646G>A	uc001vqw.3	-	30	2438	c.2316C>T	c.(2314-2316)ATC>ATT	p.I772I	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	772	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CAGGGGGTCCGATCGCTCCAT	0.433													32	81					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110833706	110833706	+	Missense_Mutation	SNP	G	A	A	rs150129180	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110833706G>A	uc001vqw.3	-	29	2248	c.2126C>T	c.(2125-2127)CCA>CTA	p.P709L	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	709	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			AGTCCCCGGTGGCCCCATGTC	0.507													11	22					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110835594	110835594	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110835594G>A	uc001vqw.3	-	27	2049	c.1927C>T	c.(1927-1929)CCT>TCT	p.P643S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	643	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCTGGTAAAGGAACAATTTTT	0.547													6	29					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110855942	110855942	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110855942C>T	uc001vqw.3	-	18	1092	c.970G>A	c.(970-972)GAA>AAA	p.E324K	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	324	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GGACCTGCTTCACCCTTTTCT	0.458													35	125					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110857886	110857886	+	Splice_Site	SNP	C	T	T	rs111267529		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:110857886C>T	uc001vqw.3	-	16	981	c.859_splice	c.e16-1	p.G287_splice	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein						angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CGGGTTTGCCCTGTAGAATAA	0.308													41	175					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111077171	111077171	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111077171G>A	uc001vqx.2	+	5	560	c.271G>A	c.(271-273)GGT>AGT	p.G91S		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	91					angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			AGGAGACAAGGGTGAAAGGGG	0.637													25	64					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111080842	111080842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111080842G>A	uc001vqx.2	+	7	678	c.389G>A	c.(388-390)GGA>GAA	p.G130E		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	130					angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GGGCCCAGGGGAAGGCCGGGC	0.622													18	83					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111109730	111109730	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111109730C>T	uc001vqx.2	+	21	1669	c.1380C>T	c.(1378-1380)GGC>GGT	p.G460G		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	460	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GAAGAGCAGGCTTCCCTGGGC	0.617													11	42					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111138100	111138100	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111138100C>T	uc001vqx.2	+	34	3413	c.3124C>T	c.(3124-3126)CCC>TCC	p.P1042S		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1042	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CATCGGAGTCCCCGGCATCCC	0.617													30	63					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111141854	111141854	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111141854C>T	uc001vqx.2	+	35	3559	c.3270C>T	c.(3268-3270)TTC>TTT	p.F1090F		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1090	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CTGGTGATTTCGGTGAGTGTT	0.507													23	72					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111156206	111156206	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111156206C>T	uc001vqx.2	+	44	4440	c.4151C>T	c.(4150-4152)ACT>ATT	p.T1384I		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1384	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GCCCCCGGGACTGTGGGAGCC	0.652													20	73					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111156291	111156291	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111156291C>T	uc001vqx.2	+	44	4525	c.4236C>T	c.(4234-4236)CCC>CCT	p.P1412P		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1412	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GGCGAGGCCCCCCTGGGGCAC	0.736													5	55					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111158873	111158873	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111158873C>T	uc001vqx.2	+	46	4803	c.4514C>T	c.(4513-4515)CCA>CTA	p.P1505L		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1505	Collagen IV NC1.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CCCATGTGCCCAGTGGGCATG	0.652													4	27					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111158883	111158883	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111158883G>A	uc001vqx.2	+	46	4813	c.4524G>A	c.(4522-4524)ATG>ATA	p.M1508I		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1508	Collagen IV NC1.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CAGTGGGCATGAACAAACTCT	0.657													12	15					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111164350	111164350	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111164350C>T	uc001vqx.2	+	48	5240	c.4951C>T	c.(4951-4953)CGC>TGC	p.R1651C		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1651	Collagen IV NC1.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			AGAGGACTTCCGCGCCACACC	0.617													33	69					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111164364	111164364	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111164364C>T	uc001vqx.2	+	48	5254	c.4965C>T	c.(4963-4965)TTC>TTT	p.F1655F		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1655	Collagen IV NC1.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CCACACCATTCATCGAATGCA	0.632													29	85					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111164437	111164437	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111164437C>T	uc001vqx.2	+	48	5327	c.5038C>T	c.(5038-5040)CCC>TCC	p.P1680S		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1680	Collagen IV NC1.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GACCACCATTCCCGAGCAGAG	0.612													17	87					0	0	1	0	0
RAB20	55647	broad.mit.edu	37	13	111176459	111176459	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111176459C>T	uc001vqy.2	-	2	463	c.258G>A	c.(256-258)CAG>CAA	p.Q86Q		NM_017817	NP_060287	Q9NX57	RAB20_HUMAN	RAB20, member RAS oncogene family	86					protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	all_cancers(4;1.54e-11)|all_epithelial(4;1.22e-06)|all_lung(23;1e-05)|Lung NSC(43;0.000453)|Colorectal(4;0.00323)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.197)			CCACCAGGCTCTGCCGGTGAT	0.627													15	67					0	0	1	0	0
CARKD	55739	broad.mit.edu	37	13	111277611	111277611	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111277611C>T	uc001vrb.2	+	4	386	c.372C>T	c.(370-372)ATC>ATT	p.I124I	CARKD_uc010tji.1_Intron|CARKD_uc010tjj.1_Silent_p.I106I|CARKD_uc001vqz.2_RNA|CARKD_uc001vra.2_Intron|CARKD_uc010tjk.1_Intron|CARKD_uc010tjl.1_Intron|CARKD_uc001vrc.2_Silent_p.I124I			Q8IW45	CARKD_HUMAN	RecName: Full=Carbohydrate kinase domain-containing protein; Flags: Precursor;	124	YjeF C-terminal.									skin(1)	1						CGGAGCTGATCGTCCACCCAG	0.592													8	31					0	0	1	0	0
C13orf16	121793	broad.mit.edu	37	13	111992259	111992259	+	Silent	SNP	C	T	T	rs34403563	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:111992259C>T	uc001vsa.2	+	4	348	c.219C>T	c.(217-219)TTC>TTT	p.F73F		NM_152324	NP_689537	Q8N6K0	CM016_HUMAN	hypothetical protein LOC121793	73	Helical; (Potential).					integral to membrane					0	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		all cancers(43;0.113)|GBM - Glioblastoma multiforme(44;0.174)|BRCA - Breast invasive adenocarcinoma(86;0.188)			CTGGGGCCTTCGTCATCACCA	0.522													47	124					0	0	1	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113202003	113202003	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:113202003G>A	uc001vse.1	-	10	1286	c.1099C>T	c.(1099-1101)CTC>TTC	p.L367F	TUBGCP3_uc010tjq.1_Missense_Mutation_p.L357F|TUBGCP3_uc001vsf.2_Missense_Mutation_p.L367F|TUBGCP3_uc001vsg.1_Missense_Mutation_p.L367F	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	367					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					CAAACCAGGAGGCGCCGAAGT	0.473													11	60					0	0	1	0	0
ATP11A	23250	broad.mit.edu	37	13	113464984	113464984	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:113464984C>T	uc001vsi.3	+	5	473	c.385C>T	c.(385-387)CCT>TCT	p.P129S	ATP11A_uc001vsj.3_Missense_Mutation_p.P129S|ATP11A_uc001vsm.1_Missense_Mutation_p.P5S	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	129	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				GAACCAGTGTCCTGTTCATTT	0.323													16	146					0	0	1	0	0
ATP11A	23250	broad.mit.edu	37	13	113512583	113512583	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:113512583C>T	uc001vsi.3	+	22	2734	c.2646C>T	c.(2644-2646)CTC>CTT	p.L882L	ATP11A_uc001vsj.3_Silent_p.L882L|ATP11A_uc001vsm.1_Silent_p.L758L|ATP11A_uc010ago.2_RNA	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	882	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				TCTCTGAGCTCGTGCAGTACT	0.507													12	55					0	0	1	0	0
MCF2L	23263	broad.mit.edu	37	13	113740500	113740500	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:113740500C>T	uc001vsu.2	+	21	2503	c.2481C>T	c.(2479-2481)TCC>TCT	p.S827S	MCF2L_uc001vsq.2_Silent_p.S827S|MCF2L_uc010tjr.1_Silent_p.S770S|MCF2L_uc001vsr.2_Silent_p.S774S|MCF2L_uc001vss.3_Silent_p.S768S|MCF2L_uc010tjs.1_Silent_p.S768S|MCF2L_uc001vst.1_Silent_p.S732S	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	800	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				CGCTGAGCTCCATCCTGGGCA	0.637													15	32					0	0	1	0	0
F10	2159	broad.mit.edu	37	13	113783888	113783888	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:113783888G>A	uc001vsx.2	+	2	250	c.193G>A	c.(193-195)GAA>AAA	p.E65K	F10_uc010agq.1_RNA|F10_uc001vsy.2_Missense_Mutation_p.E65K|F10_uc001vsz.2_Missense_Mutation_p.E65K	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	65	Gla.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGCTCATACGAAGAGGCCCG	0.572													31	91					0	0	1	0	0
PROZ	8858	broad.mit.edu	37	13	113814419	113814419	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:113814419G>A	uc001vta.1	+	2	169	c.162G>A	c.(160-162)TTG>TTA	p.L54L	PROZ_uc010agr.1_Silent_p.L76L	NM_003891	NP_003882	P22891	PROZ_HUMAN	protein Z, vitamin K-dependent plasma	54	Gla.				blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.216)	all cancers(43;0.104)		Menadione(DB00170)	AGGGAAACTTGGAAAAAGAAT	0.463													68	167					0	0	1	0	0
CUL4A	8451	broad.mit.edu	37	13	113909298	113909298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:113909298C>T	uc010tjy.1	+	19	1901	c.1890C>T	c.(1888-1890)TCC>TCT	p.S630S	CUL4A_uc010tjx.1_Silent_p.S530S|CUL4A_uc010agu.2_Silent_p.S491S|CUL4A_uc010tjz.1_Silent_p.S309S	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	630					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			CGCTGCAGTCCCTGGCCTGTG	0.458													13	34					0	0	1	0	0
LAMP1	3916	broad.mit.edu	37	13	113973849	113973850	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:113973849_113973850CC>TT	uc001vtm.1	+	5	909_910	c.628_629CC>TT	c.(628-630)CCC>TTC	p.P210F	LAMP1_uc010tka.1_Missense_Mutation_p.P157F	NM_005561	NP_005552	P11279	LAMP1_HUMAN	lysosomal-associated membrane protein 1	210	Hinge.|Lumenal (Potential).					endosome membrane|integral to plasma membrane|lysosomal membrane|membrane fraction				central_nervous_system(2)	2	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.025)|GBM - Glioblastoma multiforme(44;0.206)|Epithelial(84;0.246)			CAGCCCCTCGCCCTCACCCGTG	0.653													16	52					0	0	1	0	0
GRTP1	79774	broad.mit.edu	37	13	114009781	114009781	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:114009781C>T	uc001vtn.2	-	3	294	c.197G>A	c.(196-198)CGG>CAG	p.R66Q	GRTP1_uc010tkb.1_5'UTR|GRTP1_uc010tkc.1_Missense_Mutation_p.R66Q|GRTP1_uc010agv.1_RNA	NM_024719	NP_078995	Q5TC63	GRTP1_HUMAN	growth hormone regulated TBC protein 1	66						intracellular	Rab GTPase activator activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0314)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0978)|Breast(118;0.188)	all cancers(43;0.025)|GBM - Glioblastoma multiforme(44;0.206)|Epithelial(84;0.246)			GACCCCTTTCCGGACATAGCG	0.657													3	25					0	0	1	0	0
ADPRHL1	113622	broad.mit.edu	37	13	114107626	114107626	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:114107626G>A	uc001vtq.1	-	1	214	c.127C>T	c.(127-129)CTG>TTG	p.L43L		NM_138430	NP_612439	Q8NDY3	ARHL1_HUMAN	ADP-ribosylhydrolase like 1 isoform 1	43					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0395)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.0195)|GBM - Glioblastoma multiforme(44;0.116)			AGGTGGTCCAGGCCCCCGGAA	0.612													26	71					0	0	1	0	0
TMCO3	55002	broad.mit.edu	37	13	114202624	114202624	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:114202624C>T	uc001vtu.3	+	12	2138	c.1777C>T	c.(1777-1779)CTG>TTG	p.L593L		NM_017905	NP_060375	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	593	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			GCAGTTTCTCCTGGCGGCGCT	0.557													18	64					0	0	1	0	0
FAM70B	348013	broad.mit.edu	37	13	114498180	114498180	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:114498180C>T	uc001vuh.2	+	4	339	c.312C>T	c.(310-312)ATC>ATT	p.I104I		NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	104	Helical; (Potential).					integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			GCTGCGCCATCGTGGACGGCG	0.527													10	37					0	0	1	0	0
RASA3	22821	broad.mit.edu	37	13	114773083	114773083	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:114773083C>T	uc001vui.2	-	18	1800	c.1669_splice	c.e18-1	p.F557_splice	RASA3_uc010tkk.1_Splice_Site_p.F525_splice|RASA3_uc001vuj.2_Splice_Site_p.F174_splice	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3						intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			GATCCAAGAACTAAAGTTGGA	0.443													4	47					0	0	1	0	0
ZNF828	283489	broad.mit.edu	37	13	115090016	115090016	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr13:115090016C>T	uc010ahb.2	+	3	1028	c.699C>T	c.(697-699)TTC>TTT	p.F233F	ZNF828_uc001vuv.2_Silent_p.F233F|ZNF828_uc010tko.1_Silent_p.F233F	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	233	Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		AGTCTCATTTCCCGGAAACAT	0.532													9	156					0	0	1	0	0
OR11H12	440153	broad.mit.edu	37	14	19378024	19378024	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:19378024C>T	uc010tkp.1	+	1	431	c.431C>T	c.(430-432)CCC>CTC	p.P144L		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	144	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCTGCCGTCCCTTGCTCTAT	0.448													41	121					0	0	1	0	0
OR11H12	440153	broad.mit.edu	37	14	19378100	19378100	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:19378100G>T	uc010tkp.1	+	1	507	c.507G>T	c.(505-507)CTG>CTT	p.L169L		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	169	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTGGATTTCTGTGGTTCCTGA	0.488													28	146					8.73648e-17	8.77815e-17	1	1	0
POTEG	404785	broad.mit.edu	37	14	19553749	19553749	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:19553749G>A	uc001vuz.1	+	1	385	c.333G>A	c.(331-333)GGG>GGA	p.G111G	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	111										ovary(1)	1						GCTGCAGGGGGAGCGGCAAGA	0.597													100	316					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19553778	19553778	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:19553778G>A	uc001vuz.1	+	1	414	c.362G>A	c.(361-363)GGA>GAA	p.G121E	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	121										ovary(1)	1						GGCCCTTGGGGAGACTACGAC	0.597													60	359					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19566052	19566052	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:19566052C>T	uc001vuz.1	+	6	1148	c.1096C>T	c.(1096-1098)CTA>TTA	p.L366L	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA|uc001vvb.2_Intron	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	366										ovary(1)	1						AAAACAGATGCTAAAAGTCTC	0.219													12	161					0	0	1	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215667	20215667	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20215667C>T	uc010tkt.1	+	1	81	c.81C>T	c.(79-81)CTC>CTT	p.L27L		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGCTATTTCTCTTCTTACTAT	0.393													54	114					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20248731	20248731	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20248731G>A	uc010tku.1	+	1	250	c.250G>A	c.(250-252)GAC>AAC	p.D84N		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AATGCTCATAGACTTCTTTGT	0.443													109	276					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20249284	20249284	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20249284C>T	uc010tku.1	+	1	803	c.803C>T	c.(802-804)TCC>TTC	p.S268F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GACTCATTTTCCCTAGATAAA	0.418													38	113					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20249310	20249310	+	Missense_Mutation	SNP	C	T	T	rs3968186		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20249310C>T	uc010tku.1	+	1	829	c.829C>T	c.(829-831)CAT>TAT	p.H277Y		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	277	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTCTGTGTTTCATACTGTAAT	0.388													32	80					0	0	1	0	0
OR4N2	390429	broad.mit.edu	37	14	20296056	20296056	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20296056T>C	uc010tkv.1	+	1	449	c.449T>C	c.(448-450)CTT>CCT	p.L150P		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTCTGTGGCTTGGGGGTTTT	0.532													73	153					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20344598	20344598	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20344598C>T	uc001vwh.1	+	1	172	c.172C>T	c.(172-174)CCT>TCT	p.P58S		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCTACACTCTCCTATGTATTT	0.398													113	243					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20344970	20344970	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20344970C>T	uc001vwh.1	+	1	544	c.544C>T	c.(544-546)CCT>TCT	p.P182S		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGTGACCTTCCTGTGGTGTT	0.423													134	315					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20345121	20345121	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20345121G>A	uc001vwh.1	+	1	695	c.695G>A	c.(694-696)GGA>GAA	p.G232E		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCTTCCAGAGGATCATCTAAG	0.383													56	142					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20345124	20345124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20345124C>T	uc001vwh.1	+	1	698	c.698C>T	c.(697-699)TCA>TTA	p.S233L		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCCAGAGGATCATCTAAGGCC	0.388													54	141					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20345295	20345295	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20345295G>A	uc001vwh.1	+	1	869	c.869G>A	c.(868-870)AGG>AAG	p.R290K		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TATACTTTGAGGAATCAAGAA	0.358													20	60					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20389047	20389047	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20389047C>T	uc010tkw.1	+	1	282	c.282C>T	c.(280-282)TTC>TTT	p.F94F		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCATATCTTTCAGTGGCTGCA	0.423													106	212					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20389662	20389662	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20389662G>A	uc010tkw.1	+	1	897	c.897G>A	c.(895-897)AGG>AGA	p.R299R		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGCCGTAAGGAAAATTGTGA	0.383													46	111					0	0	1	0	0
OR4K1	79544	broad.mit.edu	37	14	20404029	20404029	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20404029C>T	uc001vwj.1	+	1	204	c.204C>T	c.(202-204)TTC>TTT	p.F68F		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		ATCTTTCTTTCATTGATATCT	0.388													55	131					0	0	1	0	0
OR4K1	79544	broad.mit.edu	37	14	20404038	20404038	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20404038C>T	uc001vwj.1	+	1	213	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TCATTGATATCTGTCAGTCTA	0.393													53	127					0	0	1	0	0
OR4K1	79544	broad.mit.edu	37	14	20404233	20404233	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20404233G>A	uc001vwj.1	+	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GTACAATTATGAACCGGAGGC	0.443													33	82					0	0	1	0	0
OR4K15	81127	broad.mit.edu	37	14	20443765	20443765	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20443765C>T	uc010tkx.1	+	1	88	c.88C>T	c.(88-90)CAT>TAT	p.H30Y		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	30	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGAGACAAATCATTCTCGGGT	0.388													56	107					0	0	1	0	0
OR4K15	81127	broad.mit.edu	37	14	20444290	20444290	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20444290C>T	uc010tkx.1	+	1	613	c.613C>T	c.(613-615)CTT>TTT	p.L205F		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	205	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTCTGTGACCTTCCTCTAGT	0.418													85	191					0	0	1	0	0
OR4K14	122740	broad.mit.edu	37	14	20482730	20482730	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20482730G>A	uc010tky.1	-	1	623	c.623C>T	c.(622-624)TCC>TTC	p.S208F		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		ACAGCTCAAGGAAAGCAACCC	0.507													20	38					0	0	1	0	0
OR4K13	390433	broad.mit.edu	37	14	20502631	20502631	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20502631C>T	uc010tkz.1	-	1	287	c.287G>A	c.(286-288)GGA>GAA	p.G96E		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		GGAATAACATCCCCACCATGA	0.463													30	60					0	0	1	0	0
OR4L1	122742	broad.mit.edu	37	14	20528284	20528284	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20528284C>T	uc001vwn.1	+	1	81	c.81C>T	c.(79-81)TTC>TTT	p.F27F		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AAATTTTCTTCTTTGTGACAT	0.383													91	219					0	0	1	0	0
OR4L1	122742	broad.mit.edu	37	14	20528889	20528889	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20528889C>T	uc001vwn.1	+	1	686	c.686C>T	c.(685-687)TCA>TTA	p.S229L		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		CCAAAAAAATCATCACATGGG	0.438													49	133					0	0	1	0	0
OR4K17	390436	broad.mit.edu	37	14	20585753	20585753	+	Missense_Mutation	SNP	C	T	T	rs150087607		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20585753C>T	uc001vwo.1	+	1	188	c.188C>T	c.(187-189)TCG>TTG	p.S63L		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GCCCTCTTCTCGGTTATCTAT	0.408													102	288					0	0	1	0	0
OR4K17	390436	broad.mit.edu	37	14	20586117	20586118	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20586117_20586118CC>TT	uc001vwo.1	+	1	552_553	c.552_553CC>TT	c.(550-555)CTCCTT>CTTTTT	p.L185F		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TCTTGGGTCTCCTTCACTCAGG	0.446													39	79					0	0	1	0	0
OR4K17	390436	broad.mit.edu	37	14	20586169	20586169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20586169C>T	uc001vwo.1	+	1	604	c.604C>T	c.(604-606)CCC>TCC	p.P202S		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		CTTTTGTGGTCCCAATGTGGT	0.438													65	153					0	0	1	0	0
OR4N5	390437	broad.mit.edu	37	14	20612740	20612740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20612740G>A	uc010tla.1	+	1	846	c.846G>A	c.(844-846)ATG>ATA	p.M282I		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TTCCTTTGATGAACCCTGTTA	0.413													70	163					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20665616	20665616	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20665616C>T	uc010tlb.1	+	1	122	c.122C>T	c.(121-123)CCC>CTC	p.P41L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	41	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TTCAACAGCCCCAGCAACTCC	0.473													8	47					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20665659	20665659	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20665659C>T	uc010tlb.1	+	1	165	c.165C>T	c.(163-165)TTC>TTT	p.F55F		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	55	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TCCTGGGCTTCCCTTGCCCCA	0.512													19	55					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20666274	20666274	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20666274G>A	uc010tlb.1	+	1	780	c.780G>A	c.(778-780)GTG>GTA	p.V260V		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	260	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		CTCTGGTCGTGAGAGCTGTGT	0.507													51	251					0	0	1	0	0
OR11H6	122748	broad.mit.edu	37	14	20691984	20691984	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20691984G>A	uc010tlc.1	+	1	116	c.116G>A	c.(115-117)AGG>AAG	p.R39K		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	39	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		CATGGTCAAAGGGAGATGCAG	0.463													52	155					0	0	1	0	0
OR11H4	390442	broad.mit.edu	37	14	20711110	20711110	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20711110G>A	uc010tld.1	+	1	160	c.160G>A	c.(160-162)GCC>ACC	p.A54T		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	54	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		GGGAAATGGAGCCATCATCTA	0.448													32	86					0	0	1	0	0
OR11H4	390442	broad.mit.edu	37	14	20711301	20711301	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20711301G>A	uc010tld.1	+	1	351	c.351G>A	c.(349-351)CTG>CTA	p.L117L		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		TCTTTTCACTGGGAACAACTG	0.463													21	95					0	0	1	0	0
OR11H4	390442	broad.mit.edu	37	14	20711559	20711559	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20711559C>T	uc010tld.1	+	1	609	c.609C>T	c.(607-609)CCC>CCT	p.P203P		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	203	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		CCCCAGCTCCCATAACTGAAT	0.423													80	185					0	0	1	0	0
OR11H4	390442	broad.mit.edu	37	14	20711684	20711684	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20711684G>A	uc010tld.1	+	1	734	c.734G>A	c.(733-735)AGA>AAA	p.R245K		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	245	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		GCTGGTCGGAGAAAAGCCTTC	0.433													45	379					0	0	1	0	0
OR11H4	390442	broad.mit.edu	37	14	20711904	20711904	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20711904G>A	uc010tld.1	+	1	954	c.954G>A	c.(952-954)ATG>ATA	p.M318I		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	318	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		TGTTTGGAATGAGAATTCGTC	0.393													27	54					0	0	1	0	0
TTC5	91875	broad.mit.edu	37	14	20767011	20767011	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20767011G>A	uc001vwt.2	-	5	641	c.584C>T	c.(583-585)TCT>TTT	p.S195F	TTC5_uc001vwu.2_Missense_Mutation_p.S52F	NM_138376	NP_612385	Q8N0Z6	TTC5_HUMAN	tetratricopeptide repeat domain 5	195	TPR 3.				DNA repair	cytoplasm|nucleus	binding			ovary(1)	1	all_cancers(95;0.00092)		Epithelial(56;1.1e-06)|all cancers(55;8.07e-06)	GBM - Glioblastoma multiforme(265;0.0106)		CTGGCCAGTAGAGAAGTAAAG	0.423													20	38					0	0	1	0	0
CCNB1IP1	57820	broad.mit.edu	37	14	20781668	20781668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20781668G>A	uc001vwv.2	-	6	1239	c.590C>T	c.(589-591)CCA>CTA	p.P197L	CCNB1IP1_uc001vww.2_Missense_Mutation_p.P197L|CCNB1IP1_uc001vwx.2_Missense_Mutation_p.P197L|CCNB1IP1_uc001vwy.2_Missense_Mutation_p.P197L|CCNB1IP1_uc001vwz.2_Missense_Mutation_p.P197L	NM_182851	NP_878271	Q9NPC3	CIP1_HUMAN	cyclin B1 interacting protein 1 isoform 3	197						chromosome|nucleus	ligase activity|metal ion binding|protein binding		HMGA2/CCNB1IP1(2)	soft_tissue(2)|ovary(1)	3	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;8.86e-07)|all cancers(55;4.98e-06)	GBM - Glioblastoma multiforme(265;0.0164)		AATCATGGATGGTTCAAGGGT	0.418			T	HMGA2	leiomyoma								27	115					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20846357	20846357	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20846357G>A	uc001vxe.2	-	39	5587	c.5547C>T	c.(5545-5547)GCC>GCT	p.A1849A	TEP1_uc010ahk.2_Silent_p.A1192A|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Silent_p.A1741A|TEP1_uc010tlh.1_Silent_p.A187A	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1849	WD 6.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GCACATTGAAGGCCAAGGTAC	0.617													31	77					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20848472	20848472	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20848472G>A	uc001vxe.2	-	34	4965	c.4925C>T	c.(4924-4926)TCG>TTG	p.S1642L	TEP1_uc010ahk.2_Missense_Mutation_p.S985L|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.S1534L|TEP1_uc010tlh.1_5'UTR	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1642					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GGAGAGCAGCGAGGCTTGGTG	0.587													68	154					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20849204	20849204	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20849204G>A	uc001vxe.2	-	33	4688	c.4648C>T	c.(4648-4650)CTC>TTC	p.L1550F	TEP1_uc010ahk.2_Missense_Mutation_p.L893F|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.L1442F|TEP1_uc010tlh.1_5'UTR	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1550					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CCGCTCTGGAGCTGAGAAGGT	0.517													9	32					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20850797	20850797	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20850797G>A	uc001vxe.2	-	28	4165	c.4125C>T	c.(4123-4125)TTC>TTT	p.F1375F	TEP1_uc010ahk.2_Silent_p.F718F|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Silent_p.F1267F|TEP1_uc010tlh.1_5'Flank	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1375	NACHT.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CATACAGCGTGAAGAGCCTCA	0.552													29	70					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20856143	20856143	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20856143G>A	uc001vxe.2	-	18	2645	c.2605C>T	c.(2605-2607)CCA>TCA	p.P869S	TEP1_uc010ahk.2_Missense_Mutation_p.P219S|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.P761S	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	869					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GTCTTTCCTGGGGGTGGTGGA	0.512													21	61					0	0	1	0	0
PNP	4860	broad.mit.edu	37	14	20943236	20943237	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20943236_20943237CC>TT	uc001vxo.3	+	5	619_620	c.477_478CC>TT	c.(475-480)TTCCCT>TTTTCT	p.P160S	PNP_uc010ahn.2_3'UTR|PNP_uc001vxn.3_Missense_Mutation_p.P31S	NM_000270	NP_000261	P00491	PNPH_HUMAN	nucleoside phosphorylase	160					immune response|inosine catabolic process|interleukin-2 secretion|NAD biosynthesis via nicotinamide riboside salvage pathway|nicotinamide riboside catabolic process|positive regulation of alpha-beta T cell differentiation|positive regulation of T cell proliferation|purine base metabolic process|purine nucleotide catabolic process|purine-containing compound salvage|response to drug|urate biosynthetic process	cytoskeleton|cytosol	drug binding|nucleoside binding|phosphate binding|purine base binding|purine-nucleoside phosphorylase activity			ovary(2)	2					Aciclovir(DB00787)|Cladribine(DB00242)|Mercaptopurine(DB01033)	GAGATCGTTTCCCTGCCATGTC	0.47													18	36					0	0	1	0	0
RNASE10	338879	broad.mit.edu	37	14	20978633	20978633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20978633G>A	uc010tlj.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I	RNASE10_uc001vxp.2_Missense_Mutation_p.M29I	NM_001012975	NP_001012993	Q5GAN6	RNS10_HUMAN	ribonuclease, RNase A family, 10 (non-active)	1						extracellular region	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00123)		Epithelial(56;1.81e-07)|all cancers(55;1.86e-06)	GBM - Glioblastoma multiforme(265;0.022)|READ - Rectum adenocarcinoma(17;0.191)		CAGGCAAAATGAAGCTGAATC	0.333													37	109					0	0	1	0	0
RNASE10	338879	broad.mit.edu	37	14	20979118	20979118	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:20979118G>A	uc010tlj.1	+	1	488	c.488G>A	c.(487-489)GGG>GAG	p.G163E	RNASE10_uc001vxp.2_Missense_Mutation_p.G191E	NM_001012975	NP_001012993	Q5GAN6	RNS10_HUMAN	ribonuclease, RNase A family, 10 (non-active)	163						extracellular region	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00123)		Epithelial(56;1.81e-07)|all cancers(55;1.86e-06)	GBM - Glioblastoma multiforme(265;0.022)|READ - Rectum adenocarcinoma(17;0.191)		GAGCTCAAGGGGGGAAAATGT	0.473													20	48					0	0	1	0	0
RNASE9	390443	broad.mit.edu	37	14	21024852	21024852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21024852C>T	uc010aho.2	-	4	536	c.377G>A	c.(376-378)GGA>GAA	p.G126E	RNASE9_uc001vxq.3_Missense_Mutation_p.G131E|RNASE9_uc010ahp.2_Missense_Mutation_p.G131E|RNASE9_uc010ahq.2_Missense_Mutation_p.G131E|RNASE9_uc010ahr.2_Missense_Mutation_p.G131E|RNASE9_uc010ahs.2_Missense_Mutation_p.G126E|RNASE9_uc010aht.2_Missense_Mutation_p.G126E|RNASE9_uc010ahu.2_Missense_Mutation_p.G126E	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	126						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		TTTCCTAATTCCATTCTTACA	0.363													16	39					0	0	1	0	0
RNASE11	122651	broad.mit.edu	37	14	21052444	21052444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21052444G>A	uc010ahv.2	-	2	375	c.190C>T	c.(190-192)CTC>TTC	p.L64F	RNASE11_uc010ahx.2_Missense_Mutation_p.L64F|RNASE11_uc010ahw.2_Missense_Mutation_p.L64F|RNASE11_uc001vxs.2_Missense_Mutation_p.L64F	NM_145250	NP_660293	Q8TAA1	RNS11_HUMAN	ribonuclease, RNase A family, 11 (non-active)	64						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(3)	3	all_cancers(95;0.00238)	all_lung(585;0.235)	Epithelial(56;1.85e-06)|all cancers(55;1.46e-05)	GBM - Glioblastoma multiforme(265;0.0139)		GACATGCTGAGGCTGGTATTT	0.393													90	258					0	0	1	0	0
RNASE12	493901	broad.mit.edu	37	14	21058675	21058675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21058675G>A	uc001vxt.2	-	1	308	c.208C>T	c.(208-210)CAT>TAT	p.H70Y	RNASE11_uc010ahv.2_5'Flank|RNASE11_uc010ahx.2_5'Flank|RNASE11_uc010ahw.2_5'Flank|RNASE11_uc001vxs.2_5'Flank|uc001vxu.1_RNA	NM_001024822	NP_001019993	Q5GAN4	RNS12_HUMAN	ribonuclease, RNase A family, 12 (non-active)	70						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(95;0.00238)		Epithelial(56;1.85e-06)|all cancers(55;1.46e-05)	GBM - Glioblastoma multiforme(265;0.013)		GGCCTCTCATGGATGAAGACA	0.438													11	123					0	0	1	0	0
EDDM3A	10876	broad.mit.edu	37	14	21216087	21216087	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21216087G>A	uc001vyb.2	+	2	415	c.348G>A	c.(346-348)GAG>GAA	p.E116E	EDDM3A_uc001vyc.2_Silent_p.E116E	NM_006683	NP_006674	Q14507	EP3A_HUMAN	human epididymis-specific 3 alpha precursor	116					sperm displacement	extracellular space					0						GGTACACAGAGAGCAGAAGCT	0.443													20	63					0	0	1	0	0
EDDM3B	64184	broad.mit.edu	37	14	21238538	21238538	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21238538G>A	uc001vyd.2	+	2	327	c.229G>A	c.(229-231)GAG>AAG	p.E77K		NM_022360	NP_071755	P56851	EP3B_HUMAN	human epididymis-specific 3 beta precursor	77					spermatid development	extracellular region				ovary(1)	1						GTACAAAATCGAGCATATATG	0.403													25	71					0	0	1	0	0
EDDM3B	64184	broad.mit.edu	37	14	21238679	21238679	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21238679G>A	uc001vyd.2	+	2	468	c.370G>A	c.(370-372)GAA>AAA	p.E124K		NM_022360	NP_071755	P56851	EP3B_HUMAN	human epididymis-specific 3 beta precursor	124					spermatid development	extracellular region				ovary(1)	1						CAACTACATTGAATTCCATTG	0.413													12	93					0	0	1	0	0
RNASE1	6035	broad.mit.edu	37	14	21269835	21269835	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21269835C>T	uc001vyf.2	-	2	569	c.393G>A	c.(391-393)GAG>GAA	p.E131E	RNASE1_uc001vyg.2_Silent_p.E131E|RNASE1_uc001vyh.2_Silent_p.E131E|RNASE1_uc001vyi.2_Silent_p.E131E	NM_198232	NP_937875	P07998	RNAS1_HUMAN	pancreatic ribonuclease precursor	131						extracellular region	nucleic acid binding|pancreatic ribonuclease activity|protein binding				0	all_cancers(95;0.00671)	all_lung(585;0.235)	Epithelial(56;9.21e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0126)		TGATGTGTCTCTCCTTCGGGC	0.557													49	99					0	0	1	0	0
RNASE3	6037	broad.mit.edu	37	14	21359902	21359902	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21359902G>A	uc001vyj.2	+	2	111	c.57G>A	c.(55-57)ATG>ATA	p.M19I		NM_002935	NP_002926	P12724	ECP_HUMAN	ribonuclease, RNase A family, 3 (eosinophil	19					defense response to bacterium|RNA catabolic process	extracellular region|soluble fraction	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00453)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)	Pranlukast(DB01411)	TGGGGCTTATGGGTGTGGAGG	0.512													66	149					0	0	1	0	0
RNASE3	6037	broad.mit.edu	37	14	21359980	21359980	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21359980G>A	uc001vyj.2	+	2	189	c.135G>A	c.(133-135)CTG>CTA	p.L45L		NM_002935	NP_002926	P12724	ECP_HUMAN	ribonuclease, RNase A family, 3 (eosinophil	45					defense response to bacterium|RNA catabolic process	extracellular region|soluble fraction	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00453)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)	Pranlukast(DB01411)	ACATCAGTCTGAACCCCCCTC	0.488													49	118					0	0	1	0	0
METT11D1	64745	broad.mit.edu	37	14	21464991	21464991	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21464991C>T	uc001vyn.2	+	14	1510	c.1313C>T	c.(1312-1314)CCT>CTT	p.P438L	METT11D1_uc001vym.2_Missense_Mutation_p.P429L|METT11D1_uc001vyo.2_Silent_p.T462T|METT11D1_uc001vyp.2_Missense_Mutation_p.P280L|METT11D1_uc001vyq.2_Silent_p.T304T|SLC39A2_uc001vyr.2_5'Flank|SLC39A2_uc001vys.2_5'Flank	NM_022734	NP_073571	Q9H7H0	MET17_HUMAN	methyltransferase 11 domain containing 1 isoform	438					translation	mitochondrion|ribosome	copper ion binding|methyltransferase activity				0	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0191)		GATCTTTTACCTGTGCTTACT	0.522													39	94					0	0	1	0	0
TPPP2	122664	broad.mit.edu	37	14	21499223	21499223	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21499223G>A	uc001vzh.2	+	3	414	c.226G>A	c.(226-228)GAA>AAA	p.E76K	NDRG2_uc010tll.1_Intron	NM_173846	NP_776245	P59282	TPPP2_HUMAN	tubulin polymerization-promoting protein family	76						cytoplasm					0	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		GGCAGTGAAGGAACTGGGCCA	0.502													29	63					0	0	1	0	0
RNASE7	84659	broad.mit.edu	37	14	21511371	21511371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21511371G>A	uc001vzk.3	+	2	477	c.220G>A	c.(220-222)GAG>AAG	p.E74K	NDRG2_uc010tll.1_Intron|RNASE7_uc001vzl.2_RNA	NM_032572	NP_115961	Q9H1E1	RNAS7_HUMAN	ribonuclease, RNase A family, 7 precursor	74					defense response to bacterium|innate immune response	extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(1)	1	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;3.42e-11)|Epithelial(56;5.57e-09)|all cancers(55;2.36e-08)	GBM - Glioblastoma multiforme(265;0.0191)		CTTCCTGCACGAGCCTTTCTC	0.542													25	92					0	0	1	0	0
FLJ10357	55701	broad.mit.edu	37	14	21542995	21542995	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21542995C>T	uc001vzp.2	+	3	1135	c.1106C>T	c.(1105-1107)CCT>CTT	p.P369L	FLJ10357_uc001vzn.1_Missense_Mutation_p.P369L|FLJ10357_uc001vzo.1_Intron|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_5'UTR	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	369	Gly-rich.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		GAAGGACCACCTGGTACCCCT	0.642													10	51					0	0	1	0	0
OR5AU1	390445	broad.mit.edu	37	14	21624046	21624046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21624046C>T	uc010tlp.1	-	1	139	c.139G>A	c.(139-141)GAG>AAG	p.E47K		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	47	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		CTCCAGTGCTCTGCGATGGAG	0.532													38	90					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21771626	21771626	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21771626G>A	uc001wag.2	+	5	724	c.724G>A	c.(724-726)GAG>AAG	p.E242K		NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	242					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		CAAGTCTCCTGAGAAAATGTG	0.478													26	37					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21793123	21793124	+	Missense_Mutation	DNP	AC	CA	CA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21793123_21793124AC>CA	uc001wag.2	+	14	2109_2110	c.2109_2110AC>CA	c.(2107-2112)ATACAC>ATCAAC	p.H704N	RPGRIP1_uc001wah.2_Missense_Mutation_p.H346N|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001waj.1_Missense_Mutation_p.H169N|RPGRIP1_uc001wak.2_Missense_Mutation_p.H179N|RPGRIP1_uc010aim.2_Missense_Mutation_p.H87N|RPGRIP1_uc001wal.2_Missense_Mutation_p.H63N|RPGRIP1_uc001wam.2_Missense_Mutation_p.H21N	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	704					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		GGCTTGACATACACCAGGCCAT	0.53													50	128					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21795948	21795948	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21795948G>A	uc001wag.2	+	17	2877	c.2877G>A	c.(2875-2877)AAG>AAA	p.K959K	RPGRIP1_uc001wah.2_Silent_p.K601K|RPGRIP1_uc001wai.2_Silent_p.K285K|RPGRIP1_uc001wak.2_Silent_p.K434K|RPGRIP1_uc010aim.2_Silent_p.K342K|RPGRIP1_uc001wal.2_Silent_p.K318K|RPGRIP1_uc001wam.2_Silent_p.K276K	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	959	Interaction with RPGR.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		AAGAGGAAAAGGCTTCATTTC	0.463													4	26					0	0	1	0	0
SUPT16H	11198	broad.mit.edu	37	14	21840062	21840063	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21840062_21840063GG>AA	uc001wao.2	-	3	639_640	c.300_301CC>TT	c.(298-303)GCCCCT>GCTTCT	p.P101S		NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	101					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		GTGATGGCAGGGGCTCCATTAG	0.381													16	60					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21860965	21860965	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21860965G>A	uc001was.1	-	34	5729	c.5635C>T	c.(5635-5637)CGT>TGT	p.R1879C	CHD8_uc001war.1_Missense_Mutation_p.R1775C|SNORD9_uc001wat.1_5'Flank	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	2158					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		ATCAGGACACGATCCTGAATG	0.463													12	151					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21866051	21866051	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21866051C>G	uc001was.1	-	27	4239	c.4145G>C	c.(4144-4146)GGC>GCC	p.G1382A	CHD8_uc001war.1_Missense_Mutation_p.G1278A|SNORD8_uc001wau.1_5'Flank	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1661					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		ATCTGGTCGGCCAGCCTTTTC	0.393													5	22					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21876619	21876620	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21876619_21876620GG>AA	uc001was.1	-	13	1838_1839	c.1744_1745CC>TT	c.(1744-1746)CCC>TTC	p.P582F	CHD8_uc001war.1_Missense_Mutation_p.P478F|CHD8_uc001wav.1_Missense_Mutation_p.P24F	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	861	Helicase ATP-binding.				ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		GACCAAGAAGGGACCATGGATG	0.47													12	77					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21896403	21896403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21896403G>A	uc001was.1	-	4	483	c.389C>T	c.(388-390)TCC>TTC	p.S130F	CHD8_uc001war.1_Missense_Mutation_p.S26F	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	409	Gln-rich.				ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		GGCCCCTTGGGAAGAGCCAGC	0.473													11	95					0	0	1	0	0
RAB2B	84932	broad.mit.edu	37	14	21930572	21930572	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21930572G>A	uc010tlt.1	-	7	581	c.480C>T	c.(478-480)TTC>TTT	p.F160F	RAB2B_uc010tls.1_Silent_p.F114F|RAB2B_uc001wax.2_Silent_p.F95F|RAB2B_uc010ain.2_Silent_p.F51F	NM_032846	NP_116235	Q8WUD1	RAB2B_HUMAN	RAB2B protein isoform 1	160					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane|plasma membrane	GTP binding			ovary(1)	1	all_cancers(95;0.000858)		Epithelial(56;1.53e-06)|all cancers(55;1.44e-05)	GBM - Glioblastoma multiforme(265;0.00391)		CTGTGTTAATGAAGGCCTGAA	0.358													42	107					0	0	1	0	0
TOX4	9878	broad.mit.edu	37	14	21945658	21945658	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21945658C>T	uc001waz.2	+	2	113	c.10C>T	c.(10-12)CCC>TCC	p.P4S	RAB2B_uc010tls.1_5'Flank|RAB2B_uc001wax.2_5'Flank|RAB2B_uc010tlt.1_5'Flank|RAB2B_uc010ain.2_5'Flank|TOX4_uc001way.2_5'UTR|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Intron	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	4						chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		TTTCCAGTTTCCCGGAGGAAA	0.592											OREG0022569	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	131					0	0	1	0	0
METTL3	56339	broad.mit.edu	37	14	21967278	21967278	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21967278G>A	uc001wbc.2	-	10	1614	c.1522C>T	c.(1522-1524)CGT>TGT	p.R508C	TOX4_uc001waz.2_3'UTR|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_3'UTR|TOX4_uc010tlv.1_3'UTR|METTL3_uc001wbb.2_Missense_Mutation_p.R353C	NM_019852	NP_062826	Q86U44	MTA70_HUMAN	methyltransferase like 3	508					gene expression	nuclear speck	mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity|RNA binding			pancreas(1)|skin(1)	2	all_cancers(95;0.000628)		Epithelial(56;6.61e-06)	GBM - Glioblastoma multiforme(265;0.0146)		CTGGTGGAACGAACCTAGGAA	0.373													24	39					0	0	1	0	0
SALL2	6297	broad.mit.edu	37	14	21990920	21990920	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21990920G>A	uc001wbe.2	-	2	3224	c.2942C>T	c.(2941-2943)TCT>TTT	p.S981F	SALL2_uc010tly.1_Missense_Mutation_p.S979F|SALL2_uc010tlz.1_Intron|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Intron|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	981							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		AGGGACTAGAGAAAGAGCAGC	0.562													25	66					0	0	1	0	0
SALL2	6297	broad.mit.edu	37	14	21991358	21991358	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21991358G>A	uc001wbe.2	-	2	2786	c.2504C>T	c.(2503-2505)TCT>TTT	p.S835F	SALL2_uc010tly.1_Missense_Mutation_p.S833F|SALL2_uc010tlz.1_Missense_Mutation_p.S698F|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.S700F|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	835							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		TGGCAAAGAAGACTGTTGAGT	0.567													12	69					0	0	1	0	0
SALL2	6297	broad.mit.edu	37	14	21992264	21992265	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21992264_21992265CC>TT	uc001wbe.2	-	2	1879_1880	c.1597_1598GG>AA	c.(1597-1599)GGC>AAC	p.G533N	SALL2_uc010tly.1_Missense_Mutation_p.G531N|SALL2_uc010tlz.1_Missense_Mutation_p.G396N|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.G398N|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	533							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		GATGGCTGAGCCCTCACTCCCT	0.52													7	66					0	0	1	0	0
SALL2	6297	broad.mit.edu	37	14	21992957	21992957	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:21992957G>A	uc001wbe.2	-	2	1187	c.905C>T	c.(904-906)CCT>CTT	p.P302L	SALL2_uc010tly.1_Missense_Mutation_p.P300L|SALL2_uc010tlz.1_Missense_Mutation_p.P165L|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.P167L|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	302							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		GGCTGGGGAAGGGGCAGGGGT	0.612													15	29					0	0	1	0	0
SALL2	6297	broad.mit.edu	37	14	22005007	22005007	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22005007C>T	uc001wbe.2	-	1	331	c.49G>A	c.(49-51)GAA>AAA	p.E17K	SALL2_uc010tma.1_Missense_Mutation_p.E17K|SALL2_uc001wbg.1_Missense_Mutation_p.E17K	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	17							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		CTGGGACCTTCGCAGTCCGAG	0.632													24	45					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102441	22102441	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22102441G>A	uc010tmc.1	-	1	558	c.558C>T	c.(556-558)ATC>ATT	p.I186I		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		ATACTGCGCGGATGTCACAGA	0.547													14	120					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102645	22102645	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22102645G>A	uc010tmc.1	-	1	354	c.354C>T	c.(352-354)TTC>TTT	p.F118F		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		AGGTGTAGAGGAAGCACTGGG	0.502													10	22					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102707	22102707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22102707G>A	uc010tmc.1	-	1	292	c.292C>T	c.(292-294)CCG>TCG	p.P98S		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		CCACCAAACGGGATAGCCTTG	0.498													20	36					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102815	22102815	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22102815G>A	uc010tmc.1	-	1	184	c.184C>T	c.(184-186)CGC>TGC	p.R62C		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		TACATGGGGCGAGCACAGAGC	0.512													30	68					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102995	22102995	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22102995C>T	uc010tmc.1	-	1	4	c.4G>A	c.(4-6)GGA>AGA	p.G2R		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		TTGGTCTTTCCCATGTCTTTT	0.438													25	92					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133704	22133704	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22133704G>A	uc010tmd.1	+	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CCAATGTGATGAACATGAGAG	0.483													69	126					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133973	22133973	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22133973G>A	uc010tmd.1	+	1	677	c.677G>A	c.(676-678)CGA>CAA	p.R226Q		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		GTTTCTCTTCGAAAACACTCA	0.502													30	60					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22134064	22134064	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22134064C>T	uc010tmd.1	+	1	768	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CATGTATCTTCATCTATACTC	0.507													20	46					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22134094	22134094	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22134094C>T	uc010tmd.1	+	1	798	c.798C>T	c.(796-798)TCC>TCT	p.S266S		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CCAGCTTCTCCATTGACAAGG	0.507													15	54					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22134151	22134151	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22134151C>T	uc010tmd.1	+	1	855	c.855C>T	c.(853-855)TTC>TTT	p.F285F		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TGAATCCCTTCATTTACACCT	0.453													16	71					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22180969	22180969	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22180969G>A	uc010tme.1	+	3		c.288G>A			uc001wbm.2_Missense_Mutation_p.G81R					Homo sapiens mRNA for T cell receptor alpha variable 2, partial cds, clone: SEB 280.																		TTCTCAGCAGGGACGATACAA	0.502													73	192					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22192542	22192542	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22192542C>T	uc001wbn.2	+	2		c.445C>T								Homo sapiens mRNA for T cell receptor alpha variable 3, partial cds, clone: SEB 36.																		AGCGACTCCGCTTTGTACTTC	0.478													17	27					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22204515	22204515	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22204515G>A	uc010aio.1	+	1		c.64G>A			uc001wbp.2_Silent_p.A5A|uc010aip.1_Silent_p.A5A					Homo sapiens mRNA for T cell receptor alpha variable 4, partial cds, clone: SEB 72.																		GGCAAGTGGCGAGAGTGATCG	0.522													5	11					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22337337	22337337	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22337337C>T	uc010tmf.1	+	2	210	c.131C>T	c.(130-132)ACT>ATT	p.T44I	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Missense_Mutation_p.T43I|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		ATCAAGTGTACTTATTCAGAC	0.438													53	103					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22337365	22337365	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22337365C>T	uc010tmf.1	+	2	238	c.159C>T	c.(157-159)TTC>TTT	p.F53F	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Silent_p.F52F|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		CAAACTACTTCCCTTGGTATA	0.438													56	140					0	0	1	0	0
OXA1L	5018	broad.mit.edu	37	14	23235850	23235850	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23235850C>T	uc001wgn.2	+	1	120	c.120C>T	c.(118-120)TTC>TTT	p.F40F	OXA1L_uc010tnc.1_Silent_p.F40F|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Silent_p.F40F|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		AAAAGTGCTTCCTCTCGAGGG	0.547													69	148					0	0	1	0	0
OXA1L	5018	broad.mit.edu	37	14	23235899	23235899	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23235899C>T	uc001wgn.2	+	1	169	c.169C>T	c.(169-171)CTT>TTT	p.L57F	OXA1L_uc010tnc.1_Missense_Mutation_p.L57F|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Missense_Mutation_p.L57F|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		AGCAAGTCCTCTTCCGGGCAA	0.607													57	128					0	0	1	0	0
LRP10	26020	broad.mit.edu	37	14	23344336	23344336	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23344336C>T	uc001whd.2	+	4	841	c.288C>T	c.(286-288)TCC>TCT	p.S96S	LRP10_uc001whe.2_5'UTR	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	96	CUB 1.|Extracellular (Potential).				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		CACTGATCTCCCTGTGTGAGG	0.622													13	49					0	0	1	0	0
REM2	161253	broad.mit.edu	37	14	23353973	23353973	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23353973G>A	uc001whf.1	+	2	259	c.194G>A	c.(193-195)CGA>CAA	p.R65Q	REM2_uc010tnd.1_Missense_Mutation_p.R57Q	NM_173527	NP_775798	Q8IYK8	REM2_HUMAN	rad and gem related GTP binding protein 2	65					regulation of transcription, DNA-dependent|small GTPase mediated signal transduction	intracellular|plasma membrane	ATP binding|GTP binding|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.012)		GCCCCCAGACGAAGAGGCAGT	0.577													24	42					0	0	1	0	0
RBM23	55147	broad.mit.edu	37	14	23380554	23380554	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23380554G>A	uc001whg.2	-	2	248	c.49C>T	c.(49-51)CCC>TCC	p.P17S	RBM23_uc001whh.2_Missense_Mutation_p.P17S|RBM23_uc001whi.2_Missense_Mutation_p.P17S|RBM23_uc010tne.1_5'UTR|RBM23_uc001whj.2_Intron|RBM23_uc001whk.1_Missense_Mutation_p.P17S	NM_001077351	NP_001070819	Q86U06	RBM23_HUMAN	RNA binding motif protein 23 isoform 1	17					mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.0128)		TTTTTATAGGGAGCTTCCAGC	0.368													49	207					0	0	1	0	0
PRMT5	10419	broad.mit.edu	37	14	23396742	23396742	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23396742G>A	uc001whm.1	-	4	534	c.443C>T	c.(442-444)TCT>TTT	p.S148F	PRMT5_uc001whl.1_Missense_Mutation_p.S131F|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_Missense_Mutation_p.S42F|PRMT5_uc010tng.1_Missense_Mutation_p.S87F|PRMT5_uc010tnh.1_Missense_Mutation_p.S104F|PRMT5_uc001whn.1_Intron	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	148					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		TACCATGGAAGAGTGATGGCC	0.488													23	55					0	0	1	0	0
PRMT5	10419	broad.mit.edu	37	14	23397352	23397352	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23397352G>A	uc001whm.1	-	3	389	c.298C>T	c.(298-300)CGC>TGC	p.R100C	PRMT5_uc001whl.1_Missense_Mutation_p.R83C|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_5'UTR|PRMT5_uc010tng.1_Intron|PRMT5_uc010tnh.1_Intron|PRMT5_uc001whn.1_Missense_Mutation_p.R83C	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	100					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		GAGTTCCTGCGAATCTTCTCC	0.498													7	102					0	0	1	0	0
HAUS4	54930	broad.mit.edu	37	14	23416931	23416931	+	Missense_Mutation	SNP	G	A	A	rs138593865	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23416931G>A	uc001whp.2	-	7	749	c.718C>T	c.(718-720)CGC>TGC	p.R240C	HAUS4_uc001who.2_RNA|HAUS4_uc001whq.2_Missense_Mutation_p.R114C|HAUS4_uc001whr.2_Missense_Mutation_p.R240C|HAUS4_uc001whs.2_Missense_Mutation_p.R195C|HAUS4_uc001wht.2_Missense_Mutation_p.R240C|HAUS4_uc001whu.2_Missense_Mutation_p.R195C|HAUS4_uc001whv.2_Missense_Mutation_p.R116C|HAUS4_uc001whw.2_Missense_Mutation_p.R240C|HAUS4_uc001whx.2_Missense_Mutation_p.R195C	NM_017815	NP_060285	Q9H6D7	HAUS4_HUMAN	HAUS augmin-like complex, subunit 4	240					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle				ovary(1)	1						GTGAGGCAGCGGAGAAGCACC	0.507													27	76					0	0	1	0	0
JUB	84962	broad.mit.edu	37	14	23443310	23443310	+	Silent	SNP	G	A	A	rs146599877	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23443310G>A	uc001whz.2	-	7	1813	c.1437C>T	c.(1435-1437)ATC>ATT	p.I479I	JUB_uc001why.2_Silent_p.I62I	NM_032876	NP_116265	Q96IF1	JUB_HUMAN	ajuba isoform 1	479	LIM zinc-binding 3.				cell cycle|gene silencing by miRNA|positive regulation of protein complex assembly	cell-cell junction|cytoplasmic mRNA processing body|microtubule organizing center	alpha-catenin binding|zinc ion binding				0	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0122)		TCACCCTCACGATGTCCTCAC	0.537											OREG0022591	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	57	143					0	0	1	0	0
PSMB11	122706	broad.mit.edu	37	14	23511881	23511881	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23511881C>T	uc010ake.1	+	1	506	c.447C>T	c.(445-447)GCC>GCT	p.A149A		NM_001099780	NP_001093250	A5LHX3	PSB11_HUMAN	proteasome beta 11 subunit precursor	149					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00643)		TGGCCACTGCCCTCTGCGGCT	0.617													33	56					0	0	1	0	0
CDH24	64403	broad.mit.edu	37	14	23517527	23517527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23517527C>T	uc001wil.2	-	13	2382	c.2122G>A	c.(2122-2124)GGG>AGG	p.G708R	CDH24_uc001wik.3_RNA|CDH24_uc010akf.2_Missense_Mutation_p.G670R	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	708	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		ggggccgccccgTCCGGGTTC	0.572													45	87					0	0	1	0	0
CDH24	64403	broad.mit.edu	37	14	23517687	23517687	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23517687G>A	uc001wil.2	-	13	2222	c.1962C>T	c.(1960-1962)GCC>GCT	p.A654A	CDH24_uc001wik.3_RNA|CDH24_uc010akf.2_Silent_p.A616A	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	654	Helical; (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		GCACCACCAGGGCTGCGCGAG	0.647													29	91					0	0	1	0	0
ACIN1	22985	broad.mit.edu	37	14	23549177	23549177	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23549177G>A	uc001wit.3	-	6	1869	c.1541C>T	c.(1540-1542)GCC>GTC	p.A514V	ACIN1_uc001wis.3_Missense_Mutation_p.A196V|ACIN1_uc010akg.2_Missense_Mutation_p.A514V|ACIN1_uc010tnj.1_Missense_Mutation_p.A474V	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	514					apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		ATCCTTCTGGGCTGAGTAGTC	0.493													61	94					0	0	1	0	0
C14orf119	55017	broad.mit.edu	37	14	23566952	23566953	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23566952_23566953CC>TT	uc001wiu.2	+	2	127_128	c.85_86CC>TT	c.(85-87)CCT>TTT	p.P29F	ACIN1_uc001wit.3_5'Flank|ACIN1_uc010akg.2_5'Flank|ACIN1_uc010tnj.1_5'Flank	NM_017924	NP_060394	Q9NWQ9	CN119_HUMAN	chromosome 14 open reading frame 119	29											0	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.00649)		CCCTTCCCCTCCTCTGATGTCT	0.485													82	201					0	0	1	0	0
CEBPE	1053	broad.mit.edu	37	14	23588189	23588189	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23588189C>T	uc001wiv.1	-	1	286	c.112G>A	c.(112-114)GCC>ACC	p.A38T		NM_001805	NP_001796	Q15744	CEBPE_HUMAN	CCAAT/enhancer binding protein epsilon	38						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0064)		TCAATGGAGGCCTCATGCTCA	0.642													21	94					0	0	1	0	0
SLC7A8	23428	broad.mit.edu	37	14	23600749	23600749	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23600749G>A	uc001wiz.2	-	8	1760	c.1034C>T	c.(1033-1035)GCC>GTC	p.A345V	SLC7A8_uc001wiw.2_5'Flank|SLC7A8_uc001wix.2_Missense_Mutation_p.A142V|SLC7A8_uc010tnk.1_Missense_Mutation_p.A121V|SLC7A8_uc010tnl.1_Missense_Mutation_p.A240V|SLC7A8_uc001wiy.2_RNA|SLC7A8_uc010akj.2_Intron	NM_012244	NP_036376	Q9UHI5	LAT2_HUMAN	solute carrier family 7 (cationic amino acid	345					blood coagulation|cellular amino acid metabolic process|leukocyte migration|metal ion homeostasis|response to toxin	basolateral plasma membrane|cytoplasm|integral to plasma membrane	neutral amino acid transmembrane transporter activity|organic cation transmembrane transporter activity|peptide antigen binding|protein binding|toxin transporter activity			ovary(1)	1	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.00809)	L-Alanine(DB00160)|L-Glutamine(DB00130)|L-Phenylalanine(DB00120)	GCCCTCTCGGGCTCCAGCGAA	0.602													10	35					0	0	1	0	0
SLC7A8	23428	broad.mit.edu	37	14	23635600	23635600	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23635600G>A	uc001wiz.2	-	2	1027	c.301C>T	c.(301-303)CCC>TCC	p.P101S	SLC7A8_uc010akj.2_Missense_Mutation_p.P101S	NM_012244	NP_036376	Q9UHI5	LAT2_HUMAN	solute carrier family 7 (cationic amino acid	101					blood coagulation|cellular amino acid metabolic process|leukocyte migration|metal ion homeostasis|response to toxin	basolateral plasma membrane|cytoplasm|integral to plasma membrane	neutral amino acid transmembrane transporter activity|organic cation transmembrane transporter activity|peptide antigen binding|protein binding|toxin transporter activity			ovary(1)	1	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.00809)	L-Alanine(DB00160)|L-Glutamine(DB00130)|L-Phenylalanine(DB00120)	CCAGATTTGGGGATGGTGACC	0.542													87	186					0	0	1	0	0
HOMEZ	57594	broad.mit.edu	37	14	23746205	23746205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23746205G>A	uc001wja.2	-	2	380	c.232C>T	c.(232-234)CCC>TCC	p.P78S	HOMEZ_uc001wjb.2_Missense_Mutation_p.P80S	NM_020834	NP_065885	Q8IX15	HOMEZ_HUMAN	homeodomain leucine zipper protein	78	Homeobox 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(95;5.54e-06)			GBM - Glioblastoma multiforme(265;0.00643)		CTGGGATAGGGAAAGTAGCTG	0.537													9	126					0	0	1	0	0
SLC22A17	51310	broad.mit.edu	37	14	23817773	23817773	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23817773C>T	uc001wjl.2	-	4	690	c.634G>A	c.(634-636)GAT>AAT	p.D212N	SLC22A17_uc010akk.2_Intron|SLC22A17_uc001wjn.2_Intron|SLC22A17_uc001wjm.2_Missense_Mutation_p.D212N	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	212					siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		AATCGCCAATCCTTAGAGACA	0.587													43	112					0	0	1	0	0
SLC22A17	51310	broad.mit.edu	37	14	23817804	23817804	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23817804G>A	uc001wjl.2	-	4	659	c.603C>T	c.(601-603)TTC>TTT	p.F201F	SLC22A17_uc010akk.2_Intron|SLC22A17_uc001wjn.2_Intron|SLC22A17_uc001wjm.2_Silent_p.F201F	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	201	Helical; (Potential).				siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		CCAGGAACAGGAAGTGCCCTC	0.587													30	124					0	0	1	0	0
CMTM5	116173	broad.mit.edu	37	14	23846556	23846557	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23846556_23846557CC>TT	uc010akm.2	+	1	540_541	c.96_97CC>TT	c.(94-99)TCCCAC>TCTTAC	p.H33Y	CMTM5_uc001wjs.2_Missense_Mutation_p.H33Y|CMTM5_uc001wjt.2_Missense_Mutation_p.H33Y|CMTM5_uc010akn.2_Missense_Mutation_p.H33Y|CMTM5_uc001wju.2_Missense_Mutation_p.H33Y|CMTM5_uc010ako.2_RNA	NM_138460	NP_612469	Q96DZ9	CKLF5_HUMAN	chemokine-like factor superfamily 5 isoform a	33	MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0	all_cancers(95;2e-05)			GBM - Glioblastoma multiforme(265;0.0064)|READ - Rectum adenocarcinoma(4;0.0276)|Colorectal(4;0.0382)		TCCTCACCTCCCACAAGGGCAT	0.649													17	67					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23851691	23851691	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23851691G>A	uc001wjv.2	-	38	5809	c.5742C>T	c.(5740-5742)ATC>ATT	p.I1914I		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1914	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GGGACTCAGCGATGTCCGCCC	0.592													42	96					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23855800	23855800	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23855800G>A	uc001wjv.2	-	33	4750	c.4683C>T	c.(4681-4683)CTC>CTT	p.L1561L		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1561	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCTGGGCCCGGAGGATCTTGC	0.642													77	183					0	0	1	0	0
MIR208A	406990	broad.mit.edu	37	14	23857825	23857825	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23857825C>T	hsa-mir-208a|MI0000251	-			c.51C>T			MYH6_uc001wjv.2_Intron|uc010tnn.1_RNA																	0						GCTTTTTGCTCGTCTTATACG	0.587													17	73					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23862712	23862712	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23862712C>T	uc001wjv.2	-	23	3011	c.2944G>A	c.(2944-2946)GAG>AAG	p.E982K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	982	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCCATCTCCTCTGTTAGGTTC	0.532													93	205					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23865591	23865591	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23865591C>T	uc001wjv.2	-	20	2398	c.2331G>A	c.(2329-2331)GAG>GAA	p.E777E		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	777	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CATCCCGCATCTCCTCCAGCA	0.607													5	55					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23865624	23865624	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23865624G>A	uc001wjv.2	-	20	2365	c.2298C>T	c.(2296-2298)TTC>TTT	p.F766F		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	766	Actin-binding.|Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CTGCCTTGAAGAACACCTGCA	0.642													11	34					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23866398	23866398	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23866398G>A	uc001wjv.2	-	17	2098	c.2031C>T	c.(2029-2031)CCC>CCT	p.P677P		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	677	Actin-binding.|Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TCCGCTCATTGGGGATGATGC	0.552													60	127					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23872985	23872985	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23872985C>T	uc001wjv.2	-	9	805	c.738G>A	c.(736-738)GGG>GGA	p.G246G	MYH6_uc010akp.1_Silent_p.G246G	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	246	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TAATGAATTTCCCCTGGGGAC	0.567													6	17					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23874889	23874889	+	Missense_Mutation	SNP	C	T	T	rs140596256	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23874889C>T	uc001wjv.2	-	4	359	c.292G>A	c.(292-294)GAG>AAG	p.E98K	MYH6_uc010akp.1_Missense_Mutation_p.E98K	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	98	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		ACCGCGGGCTCGTGCAGGAAG	0.592													18	71					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23884842	23884842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23884842G>A	uc001wjx.2	-	35	5259	c.5153C>T	c.(5152-5154)TCC>TTC	p.S1718F		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1718	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GCTCACCTGGGAATGCAGCAG	0.597													23	54					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23885428	23885428	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23885428C>T	uc001wjx.2	-	34	4844	c.4738G>A	c.(4738-4740)GAC>AAC	p.D1580N		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1580	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		ATCTCCTCGTCCTTCTCTGCC	0.642													70	183					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23886094	23886094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23886094C>T	uc001wjx.2	-	33	4733	c.4627G>A	c.(4627-4629)GCC>ACC	p.A1543T		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1543	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCCTCCAGGGCTGACTGCAGC	0.582													28	73					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23886741	23886742	+	Silent	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23886741_23886742GG>AA	uc001wjx.2	-	31	4429_4430	c.4323_4324CC>TT	c.(4321-4326)GCCCTG>GCTTTG	p.1441_1442AL>AL		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1441_1442	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TTCTTGTCCAGGGCTGCAGCAG	0.609													42	121					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23886856	23886857	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23886856_23886857GG>AA	uc001wjx.2	-	31	4314_4315	c.4208_4209CC>TT	c.(4207-4209)GCC>GTT	p.A1403V		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1403	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CAGCCTCCACGGCCTCCTCAGC	0.609													33	53					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23892849	23892849	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23892849G>A	uc001wjx.2	-	24	3112	c.3006C>T	c.(3004-3006)GCC>GCT	p.A1002A		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1002	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CCTGTTGGTGGGCCTCTTGCA	0.537													64	169					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23893247	23893247	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23893247C>T	uc001wjx.2	-	23	2897	c.2791G>A	c.(2791-2793)GAG>AAG	p.E931K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	931	Potential.		E -> K (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GCATTCATCTCCTCCTCATCC	0.527													37	137					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23895187	23895187	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23895187C>T	uc001wjx.2	-	19	2254	c.2148G>A	c.(2146-2148)GGG>GGA	p.G716G		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	716	Myosin head-like.		G -> R (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GCCGGAAGTCCCCGTAGAGGA	0.607													14	51					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23896011	23896011	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23896011G>A	uc001wjx.2	-	18	2125	c.2019C>T	c.(2017-2019)ATC>ATT	p.I673I		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	673	Myosin head-like.|Actin-binding.			CII -> LYH (in Ref. 2; CAA37068).	adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CATTAGGGATGATACAACGTA	0.493													19	52					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23896924	23896924	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23896924C>T	uc001wjx.2	-	16	1864	c.1758G>A	c.(1756-1758)GTG>GTA	p.V586V		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	586	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGTTGTAGTCCACGATGCCGG	0.532													26	70					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23897778	23897778	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23897778C>T	uc001wjx.2	-	15	1615	c.1509G>A	c.(1507-1509)AAG>AAA	p.K503K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	503	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CGATGCCCTCCTTCTTGTACT	0.512													33	112					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23898557	23898557	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23898557C>T	uc001wjx.2	-	13	1245	c.1139_splice	c.e13-1	p.E380_splice		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta						adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TTGTCAGCCTCTGGAAGGAAA	0.393													26	50					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23899062	23899062	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23899062C>T	uc001wjx.2	-	12	1166	c.1060G>A	c.(1060-1062)GGC>AGC	p.G354S		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	354	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		ATGATGGCGCCTGTCAGCTTA	0.537													9	102					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23901876	23901876	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23901876G>A	uc001wjx.2	-	5	580	c.474C>T	c.(472-474)TCC>TCT	p.S158S		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	158	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		AGGCGTTGTCGGAGATGGAGA	0.607													76	141					0	0	1	0	0
NGDN	25983	broad.mit.edu	37	14	23944473	23944473	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:23944473C>T	uc001wjy.2	+	4	265	c.238C>T	c.(238-240)CTT>TTT	p.L80F	NGDN_uc001wjz.2_Missense_Mutation_p.L80F|NGDN_uc001wka.2_5'Flank	NM_001042635	NP_001036100	Q8NEJ9	NGDN_HUMAN	neuroguidin isoform 1	80	Necessary for interaction with EIF4E (By similarity).				regulation of translation	axon|cytoplasm|dendrite|filopodium|nucleus					0	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		AGGAGGATCTCTTCAGGGACA	0.468													41	69					0	0	1	0	0
DHRS2	10202	broad.mit.edu	37	14	24108096	24108096	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24108096G>C	uc001wkt.3	+	2	470	c.23G>C	c.(22-24)GGC>GCC	p.G8A	DHRS2_uc010aku.1_Missense_Mutation_p.G8A|DHRS2_uc001wku.3_Missense_Mutation_p.G8A|DHRS2_uc010akv.2_RNA|DHRS2_uc001wkv.3_Missense_Mutation_p.G8A	NM_182908	NP_878912	Q13268	DHRS2_HUMAN	dehydrogenase/reductase member 2 isoform 1	Error:Variant_position_missing_in_Q13268_after_alignment					C21-steroid hormone metabolic process|cellular response to oxidative stress|myeloid dendritic cell differentiation|negative regulation of apoptosis|negative regulation of cell proliferation|response to toxin	mitochondrion|nuclear envelope	binding|carbonyl reductase (NADPH) activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00659)		GTTGCCCGGGGCTACCAGGGC	0.557													38	86					0	0	1	0	0
DHRS2	10202	broad.mit.edu	37	14	24108541	24108541	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24108541G>A	uc001wkt.3	+	3	741	c.294G>A	c.(292-294)GAG>GAA	p.E98E	DHRS2_uc010aku.1_Silent_p.E98E|DHRS2_uc001wku.3_Silent_p.E98E|DHRS2_uc010akv.2_RNA|DHRS2_uc001wkv.3_Silent_p.E98E	NM_182908	NP_878912	Q13268	DHRS2_HUMAN	dehydrogenase/reductase member 2 isoform 1	76					C21-steroid hormone metabolic process|cellular response to oxidative stress|myeloid dendritic cell differentiation|negative regulation of apoptosis|negative regulation of cell proliferation|response to toxin	mitochondrion|nuclear envelope	binding|carbonyl reductase (NADPH) activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00659)		GGAAGGCTGAGGACCGGGAGC	0.652													11	37					0	0	1	0	0
DHRS4	10901	broad.mit.edu	37	14	24424253	24424253	+	Silent	SNP	C	T	T	rs138564114	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24424253C>T	uc001wla.2	+	2	171	c.138C>T	c.(136-138)TTC>TTT	p.F46F	C14orf167_uc001wkz.2_5'Flank|C14orf167_uc001wky.2_5'Flank|C14orf167_uc001wkx.2_5'Flank|C14orf167_uc010akx.1_RNA|DHRS4_uc010aky.2_Silent_p.F46F|DHRS4_uc001wlb.2_Silent_p.F46F|DHRS4_uc010akz.2_Silent_p.F46F|DHRS4_uc001wlc.3_Silent_p.F46F|DHRS4L2_uc001wld.3_Silent_p.F46F|DHRS4L2_uc001wle.3_Silent_p.F46F	NM_021004	NP_066284	Q9BTZ2	DHRS4_HUMAN	peroxisomal short-chain alcohol dehydrogenase	46	NADP (By similarity).					mitochondrion|nuclear membrane|peroxisome	binding|carbonyl reductase (NADPH) activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.00962)	Vitamin A(DB00162)	GGATCGGCTTCGCCATCGCCC	0.468													10	157					0	0	1	0	0
DHRS4L1	728635	broad.mit.edu	37	14	24511906	24511906	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24511906C>T	uc010alc.2	+	3	316	c.316C>T	c.(316-318)CTT>TTT	p.L106F	DHRS4L1_uc010tnu.1_Intron	NM_001082488	NP_001075957	P0CG22	DR4L1_HUMAN	dehydrogenase/reductase (SDR family) member 4	106							binding|oxidoreductase activity				0						GGCTATGAAGCTTCATGGAGT	0.408													52	203					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24527904	24527904	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24527904G>A	uc001wlj.2	+	18	1565	c.1408G>A	c.(1408-1410)GCC>ACC	p.A470T		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	470	LRR 8.									ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		TTCAGCGGGAGCCCAAGCCTT	0.592											OREG0022615	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	43					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24528491	24528491	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24528491C>T	uc001wlj.2	+	21	1796	c.1639C>T	c.(1639-1641)CTG>TTG	p.L547L	LRRC16B_uc001wlk.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	547										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		CCTGCAGTCACTGTCGGTGGC	0.647													15	33					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24528509	24528509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24528509C>T	uc001wlj.2	+	21	1814	c.1657C>T	c.(1657-1659)CGG>TGG	p.R553W	LRRC16B_uc001wlk.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	553										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GGCAGACTCCCGGCTGAAGCT	0.657													16	31					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24529224	24529224	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24529224C>T	uc001wlj.2	+	23	2071	c.1914C>T	c.(1912-1914)TCC>TCT	p.S638S	LRRC16B_uc001wlk.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	638										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GCGACATCTCCCAAGCCTATC	0.662													32	129					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24538596	24538596	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24538596G>A	uc001wlj.2	+	40	4259	c.4102G>A	c.(4102-4104)GAG>AAG	p.E1368K	LRRC16B_uc001wlk.2_Missense_Mutation_p.E421K|CPNE6_uc010tnv.1_5'Flank|CPNE6_uc001wlm.2_5'Flank|CPNE6_uc001wll.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1368										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		AGGAACCAGTGAGCCAGGAAC	0.627													29	44					0	0	1	0	0
CPNE6	9362	broad.mit.edu	37	14	24544463	24544463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24544463G>A	uc001wll.2	+	8	854	c.755G>A	c.(754-756)GGG>GAG	p.G252E	CPNE6_uc010tnv.1_Missense_Mutation_p.G307E|CPNE6_uc001wlm.2_Missense_Mutation_p.G77E|CPNE6_uc001wln.2_5'Flank	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	252					lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		ATGCAGGAAGGGACGGCAAAC	0.572													42	119					0	0	1	0	0
CPNE6	9362	broad.mit.edu	37	14	24546362	24546362	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24546362G>A	uc001wll.2	+	15	1399	c.1300_splice	c.e15-1	p.K434_splice	CPNE6_uc010tnv.1_Splice_Site_p.K489_splice|CPNE6_uc001wlm.2_Splice_Site_p.K259_splice|CPNE6_uc001wln.2_Splice_Site_p.K102_splice	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6						lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		CTTGCCCTCAGAAGTACTCGG	0.597													11	47					0	0	1	0	0
NRL	4901	broad.mit.edu	37	14	24552051	24552052	+	Silent	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24552051_24552052GG>AA	uc001wlo.2	-	2	137_138	c.6_7CC>TT	c.(4-9)GCCCTG>GCTTTG	p.2_3AL>AL	NRL_uc001wlp.2_Silent_p.2_3AL>AL|NRL_uc001wlq.2_Silent_p.2_3AL>AL	NM_006177	NP_006168	P54845	NRL_HUMAN	neural retina leucine zipper	2_3					response to stimulus|transcription from RNA polymerase II promoter|visual perception	nucleus	leucine zipper domain binding|sequence-specific DNA binding				0				GBM - Glioblastoma multiforme(265;0.0181)		CTGGGGGGCAGGGCCATTCTGG	0.604													11	45					0	0	1	0	0
DCAF11	80344	broad.mit.edu	37	14	24590594	24590594	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24590594C>T	uc001wlv.2	+	13	1547	c.1267C>T	c.(1267-1269)CCA>TCA	p.P423S	DCAF11_uc001wlw.2_Missense_Mutation_p.P423S|DCAF11_uc001wlz.2_Missense_Mutation_p.P323S|DCAF11_uc001wly.2_Missense_Mutation_p.P379S|DCAF11_uc001wme.2_Missense_Mutation_p.P383S|DCAF11_uc010tny.1_Missense_Mutation_p.P290S|DCAF11_uc001wmd.2_Missense_Mutation_p.P423S|DCAF11_uc001wmc.2_Missense_Mutation_p.P323S|DCAF11_uc001wmb.3_Missense_Mutation_p.P397S|DCAF11_uc001wma.3_Missense_Mutation_p.P423S	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	423						CUL4 RING ubiquitin ligase complex	protein binding				0						GCTGAAGCTCCCAGGGGACAG	0.572													43	110					0	0	1	0	0
FITM1	161247	broad.mit.edu	37	14	24600934	24600934	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24600934C>T	uc001wmf.2	+	1	260	c.162C>T	c.(160-162)CGC>CGT	p.R54R		NM_203402	NP_981947	A5D6W6	FITM1_HUMAN	fat-inducing transcript 1	54	Extracellular (Potential).				lipid particle organization|positive regulation of sequestering of triglyceride	endoplasmic reticulum membrane|integral to membrane					0						GCTTACGGCGCCTCTACCATG	0.617													22	58					0	0	1	0	0
FITM1	161247	broad.mit.edu	37	14	24601911	24601911	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24601911C>T	uc001wmf.2	+	2	856	c.758C>T	c.(757-759)GCC>GTC	p.A253V		NM_203402	NP_981947	A5D6W6	FITM1_HUMAN	fat-inducing transcript 1	253	Helical; (Potential).				lipid particle organization|positive regulation of sequestering of triglyceride	endoplasmic reticulum membrane|integral to membrane					0						GTGGTGGGCGCCGCAGTGGGC	0.602													30	68					0	0	1	0	0
PSME2	5721	broad.mit.edu	37	14	24613611	24613611	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24613611G>A	uc001wmj.2	-	7	492	c.427C>T	c.(427-429)CAG>TAG	p.Q143*	FAM158A_uc001wmi.2_5'Flank|PSME2_uc001wmk.2_Nonsense_Mutation_p.Q66*|RNF31_uc001wml.1_5'Flank	NM_002818	NP_002809	Q9UL46	PSME2_HUMAN	proteasome activator subunit 2	143					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome activator complex					0				GBM - Glioblastoma multiforme(265;0.00839)		TTTCTTACCTGGATTGCTACC	0.438													10	108					0	0	1	0	0
IPO4	79711	broad.mit.edu	37	14	24653942	24653942	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24653942G>A	uc001wmv.1	-	16	1681	c.1550C>T	c.(1549-1551)CCC>CTC	p.P517L	IPO4_uc001wmt.1_5'UTR|IPO4_uc001wmu.2_Missense_Mutation_p.P179L|IPO4_uc001wmx.1_Missense_Mutation_p.P381L|IPO4_uc001wmy.1_Missense_Mutation_p.P381L|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Missense_Mutation_p.P517L	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	517					intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		AGGGAAGTAGGGCAGCAGCGA	0.612													11	18					0	0	1	0	0
IPO4	79711	broad.mit.edu	37	14	24654769	24654769	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24654769G>A	uc001wmv.1	-	13	1305	c.1174C>T	c.(1174-1176)CTG>TTG	p.L392L	IPO4_uc001wmt.1_5'Flank|IPO4_uc001wmu.2_Silent_p.L54L|IPO4_uc001wmx.1_Silent_p.L256L|IPO4_uc001wmy.1_Silent_p.L256L|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Silent_p.L392L	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	392	HEAT 2.				intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		AGTGGGGGCAGCAGTCTGGAT	0.552													25	57					0	0	1	0	0
TSSK4	283629	broad.mit.edu	37	14	24675162	24675162	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24675162A>G	uc001wng.2	+	1	201	c.33A>G	c.(31-33)CCA>CCG	p.P11P	TM9SF1_uc010tob.1_Intron|TSSK4_uc001wne.2_Intron|TSSK4_uc001wnf.2_Intron|TSSK4_uc001wnh.2_Silent_p.P11P	NM_174944	NP_777604	Q6SA08	TSSK4_HUMAN	testis-specific serine kinase 4	11					cell differentiation|multicellular organismal development|positive regulation of CREB transcription factor activity|spermatogenesis		ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity				0				GBM - Glioblastoma multiforme(265;0.018)		AGGCAGCACCAACCACCACAG	0.522													16	64					0	0	1	0	0
TGM1	7051	broad.mit.edu	37	14	24730968	24730968	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24730968G>A	uc001wod.2	-	3	565	c.441C>T	c.(439-441)TTC>TTT	p.F147F	TGM1_uc010tog.1_Intron	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	147					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	GGAGCATATGGAAAGGCTGCC	0.592													13	127					0	0	1	0	0
ADCY4	196883	broad.mit.edu	37	14	24789026	24789026	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24789026G>A	uc001wov.2	-	21	2661	c.2655C>T	c.(2653-2655)TTC>TTT	p.F885F	ADCY4_uc001wow.2_Silent_p.F885F|ADCY4_uc010toh.1_Silent_p.F571F|ADCY4_uc001wox.2_Silent_p.F885F|ADCY4_uc001woy.2_Silent_p.F885F	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	885	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		ATTCAGAGTAGAACTCCTTGA	0.488													21	53					0	0	1	0	0
RIPK3	11035	broad.mit.edu	37	14	24805461	24805461	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24805461G>A	uc001wpb.2	-	10	1687	c.1477C>T	c.(1477-1479)CCA>TCA	p.P493S	ADCY4_uc001wov.2_5'Flank|ADCY4_uc001wow.2_5'Flank|ADCY4_uc010toh.1_5'Flank|ADCY4_uc001wox.2_5'Flank|ADCY4_uc001woy.2_5'Flank|ADCY4_uc001woz.3_5'Flank|RIPK3_uc001wpa.2_Missense_Mutation_p.P293S|RIPK3_uc010alq.2_RNA|RIPK3_uc010toi.1_Missense_Mutation_p.P272S	NM_006871	NP_006862	Q9Y572	RIPK3_HUMAN	receptor-interacting serine-threonine kinase 3	493					apoptosis|induction of apoptosis by extracellular signals	cytoplasm	ATP binding|protein binding|transcription coactivator activity			central_nervous_system(2)|ovary(1)|lung(1)	4				GBM - Glioblastoma multiforme(265;0.0181)		GAACCTACTGGTGGGGGGTGC	0.547													9	92					0	0	1	0	0
RIPK3	11035	broad.mit.edu	37	14	24808358	24808358	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24808358G>A	uc001wpb.2	-	3	544	c.334C>T	c.(334-336)CGG>TGG	p.R112W	RIPK3_uc001wpa.2_5'Flank|RIPK3_uc010alq.2_RNA|RIPK3_uc010toi.1_5'UTR|RIPK3_uc010toj.1_Missense_Mutation_p.R112W	NM_006871	NP_006862	Q9Y572	RIPK3_HUMAN	receptor-interacting serine-threonine kinase 3	112	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals	cytoplasm	ATP binding|protein binding|transcription coactivator activity			central_nervous_system(2)|ovary(1)|lung(1)	4				GBM - Glioblastoma multiforme(265;0.0181)		GGCCAGGGCCGAGGGCACTGG	0.602													29	59					0	0	1	0	0
NFATC4	4776	broad.mit.edu	37	14	24839717	24839717	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24839717G>A	uc001wpc.2	+	2	1434	c.1113G>A	c.(1111-1113)GAG>GAA	p.E371E	NFATC4_uc010tok.1_Silent_p.E434E|NFATC4_uc010tol.1_Silent_p.E434E|NFATC4_uc010alr.2_Silent_p.E434E|NFATC4_uc010als.2_Silent_p.E384E|NFATC4_uc010tom.1_Silent_p.E384E|NFATC4_uc010ton.1_Silent_p.E384E|NFATC4_uc010too.1_Silent_p.E384E|NFATC4_uc010alt.2_Silent_p.E403E|NFATC4_uc010top.1_Silent_p.E403E|NFATC4_uc010toq.1_Silent_p.E403E|NFATC4_uc010alu.2_Intron|NFATC4_uc010tor.1_Silent_p.E371E|NFATC4_uc010tos.1_Silent_p.E301E|NFATC4_uc010tot.1_Silent_p.E359E|NFATC4_uc010tou.1_Silent_p.E301E|NFATC4_uc010tov.1_Silent_p.E359E|NFATC4_uc010tow.1_Silent_p.E301E|NFATC4_uc010alv.2_Silent_p.E359E|NFATC4_uc010tox.1_Silent_p.E301E|NFATC4_uc001wpd.2_5'Flank|NFATC4_uc010toy.1_5'Flank|NFATC4_uc010toz.1_5'Flank	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	371					cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CCCGGAAGGAGGTGGCTGGCA	0.642													9	46					0	0	1	0	0
NFATC4	4776	broad.mit.edu	37	14	24845205	24845205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24845205G>A	uc001wpc.2	+	8	2275	c.1954G>A	c.(1954-1956)GAG>AAG	p.E652K	NFATC4_uc010tok.1_Missense_Mutation_p.E715K|NFATC4_uc010tol.1_Missense_Mutation_p.E715K|NFATC4_uc010alr.2_Missense_Mutation_p.E715K|NFATC4_uc010tom.1_Missense_Mutation_p.E665K|NFATC4_uc010ton.1_Missense_Mutation_p.E665K|NFATC4_uc010too.1_Missense_Mutation_p.E665K|NFATC4_uc010alt.2_Missense_Mutation_p.E684K|NFATC4_uc010top.1_Missense_Mutation_p.E684K|NFATC4_uc010toq.1_Missense_Mutation_p.E684K|NFATC4_uc010tor.1_Missense_Mutation_p.E652K|NFATC4_uc010tos.1_Missense_Mutation_p.E582K|NFATC4_uc010tot.1_Missense_Mutation_p.E640K|NFATC4_uc010tou.1_Missense_Mutation_p.E582K|NFATC4_uc010tov.1_Missense_Mutation_p.E640K|NFATC4_uc010tow.1_Missense_Mutation_p.E582K|NFATC4_uc010alv.2_Missense_Mutation_p.E640K|NFATC4_uc010tox.1_Missense_Mutation_p.E582K|NFATC4_uc001wpd.2_Missense_Mutation_p.E187K|NFATC4_uc010toy.1_Missense_Mutation_p.E187K|NFATC4_uc010toz.1_Missense_Mutation_p.E187K|NFATC4_uc010tpa.1_5'UTR|NFATC4_uc010tpb.1_5'UTR	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	652	IPT/TIG.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		GACTGTCCCCGAGTACAGCAA	0.577													24	221					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24877584	24877584	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24877584C>T	uc001wpf.3	+	3	1026	c.708C>T	c.(706-708)TCC>TCT	p.S236S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	236					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CCATGGTGTCCGTGGGAGAGA	0.597													24	98					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24878113	24878113	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24878113C>T	uc001wpf.3	+	4	1431	c.1113C>T	c.(1111-1113)ATC>ATT	p.I371I		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	371					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TCTGGAGGATCAATGAGCTGC	0.607													12	12					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24878721	24878721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24878721G>A	uc001wpf.3	+	4	2039	c.1721G>A	c.(1720-1722)CGA>CAA	p.R574Q		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	574					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CCTACATCTCGAATGATGCTG	0.527													8	23					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24880576	24880576	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24880576G>A	uc001wpf.3	+	6	2880	c.2562G>A	c.(2560-2562)ACG>ACA	p.T854T		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	854					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						ACTTTCTGACGAAGCTACACT	0.552											OREG0022626	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	95	185					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884436	24884436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24884436C>T	uc001wpf.3	+	9	3799	c.3481C>T	c.(3481-3483)CGC>TGC	p.R1161C		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1161					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GCTGCCCTTCCGCCTGGAGGT	0.647													25	61					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885322	24885322	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24885322G>A	uc001wpf.3	+	9	4685	c.4367G>A	c.(4366-4368)TGG>TAG	p.W1456*		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1456					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GGGCAGTGGTGGAGTTTGCCA	0.602													25	40					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885581	24885581	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24885581G>A	uc001wpf.3	+	9	4944	c.4626G>A	c.(4624-4626)AGG>AGA	p.R1542R		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1542					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						AACTCCGGAGGGATCTGATTT	0.567													9	11					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885902	24885902	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24885902C>T	uc001wpf.3	+	9	5265	c.4947C>T	c.(4945-4947)TTC>TTT	p.F1649F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1649	Integrase catalytic.				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TGGAGGCATTCCCCCTGAAGC	0.602													12	49					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24886121	24886121	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24886121C>T	uc001wpf.3	+	9	5484	c.5166C>T	c.(5164-5166)TTC>TTT	p.F1722F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1722	Integrase catalytic.				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						ACTGGGAATTCAAGAGGGCCC	0.637													6	16					0	0	1	0	0
CBLN3	643866	broad.mit.edu	37	14	24898065	24898065	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:24898065C>T	uc001wpg.3	-	1	667	c.196G>A	c.(196-198)GAG>AAG	p.E66K	KHNYN_uc010tpc.1_5'Flank|KHNYN_uc001wph.3_5'Flank|KHNYN_uc010alw.2_5'Flank	NM_001039771	NP_001034860	Q6UW01	CBLN3_HUMAN	cerebellin 3 precursor	66						cell junction|extracellular region|synapse				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(265;0.00159)		GGGGGTGCCTCTCCCAGGGCT	0.692													3	14					0	0	1	0	0
CTSG	1511	broad.mit.edu	37	14	25042867	25042867	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:25042867C>T	uc001wpq.2	-	5	781	c.744G>A	c.(742-744)CTG>CTA	p.L248L		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	248					immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		CCATCTGATCCAGCAGTTTGA	0.507													67	289					0	0	1	0	0
CTSG	1511	broad.mit.edu	37	14	25043497	25043497	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:25043497C>T	uc001wpq.2	-	4	585	c.548G>A	c.(547-549)AGG>AAG	p.R183K		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	183	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		ACAAATCTGCCTTCGGGGGTC	0.622													16	31					0	0	1	0	0
CTSG	1511	broad.mit.edu	37	14	25043589	25043589	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:25043589C>T	uc001wpq.2	-	4	493	c.456G>A	c.(454-456)ATG>ATA	p.M152I		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	152	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		TTCCCCTCCTCATGCTGACCC	0.617													40	106					0	0	1	0	0
GZMH	2999	broad.mit.edu	37	14	25076911	25076911	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:25076911C>T	uc001wpr.1	-	3	291	c.246G>A	c.(244-246)CAG>CAA	p.Q82Q	GZMH_uc010aly.1_Silent_p.Q82Q|GZMH_uc010alz.1_Intron	NM_033423	NP_219491	P20718	GRAH_HUMAN	granzyme H precursor	82	Peptidase S1.				apoptosis|cytolysis|proteolysis	cytoplasm	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(265;0.0267)		GGGTCCGCTCCTGTTCCTTGA	0.542													56	151					0	0	1	0	0
GZMB	3002	broad.mit.edu	37	14	25101071	25101071	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:25101071G>A	uc001wps.2	-	4	659	c.593C>T	c.(592-594)TCC>TTC	p.S198F	GZMB_uc010ama.2_Missense_Mutation_p.S186F|GZMB_uc010amb.2_RNA	NM_004131	NP_004122	P10144	GRAB_HUMAN	granzyme B precursor	198	Peptidase S1.				activation of pro-apoptotic gene products|cleavage of lamin|cytolysis|induction of apoptosis by intracellular signals	cytosol|immunological synapse|nucleus	protein binding|serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.028)		TACCTTAAAGGAAGTCTTTTT	0.473													33	98					0	0	1	0	0
NOVA1	4857	broad.mit.edu	37	14	26917478	26917478	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:26917478G>A	uc001wpy.2	-	5	1529	c.1211C>T	c.(1210-1212)CCC>CTC	p.P404L	NOVA1_uc001wpz.2_Missense_Mutation_p.P380L|NOVA1_uc001wqa.2_Missense_Mutation_p.P282L	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	407	Ala-rich.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GGCAGCTAGGGGAGAAGCAGC	0.502													20	52					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	28733809	28733809	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:28733809C>T	uc001wqd.2	+	1	190	c.50C>T	c.(49-51)TCC>TTC	p.S17F						SubName: Full=cDNA FLJ60537, highly similar to BCL2/adenovirus E1B 19 kDa protein-interacting protein 3;																		CTGCAGGGCTCCTGGGTAGAA	0.587													5	36					0	0	1	0	0
FOXG1	2290	broad.mit.edu	37	14	29237400	29237400	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:29237400C>T	uc001wqe.2	+	1	1114	c.915C>T	c.(913-915)TCC>TCT	p.S305S		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	305				RAGSLYWPMSPFLSLHHPR -> APAPSTGPCRPSCPCTTP (in Ref. 1; CAA52240 and 2; CAA55038).	axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		GCGCCGGCTCCCTCTACTGGC	0.701													41	131					0	0	1	0	0
PRKD1	5587	broad.mit.edu	37	14	30066932	30066932	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:30066932G>A	uc001wqh.2	-	16	2380	c.2199C>T	c.(2197-2199)ATC>ATT	p.I733I		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	733	Protein kinase.				cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		TCTCTCCAATGATCCGGGCAA	0.468													26	50					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	31290653	31290653	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:31290653C>T	uc001wqo.2	+	1		c.21C>T								full-length cDNA clone CS0DC024YB05 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).																		GGGCAAGTTCCTGAAACCTCG	0.473													12	38					0	0	1	0	0
ARHGAP5	394	broad.mit.edu	37	14	32562460	32562460	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:32562460C>T	uc001wrl.2	+	2	2824	c.2585C>T	c.(2584-2586)TCG>TTG	p.S862L	ARHGAP5_uc001wrm.2_Missense_Mutation_p.S862L|ARHGAP5_uc001wrn.2_Missense_Mutation_p.S862L|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	862					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		CGGAAAGCTTCGATGGGAATG	0.378													17	52					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33015577	33015577	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:33015577C>T	uc001wrq.2	+	4	1888	c.1718C>T	c.(1717-1719)TCC>TTC	p.S573F	AKAP6_uc010aml.2_Missense_Mutation_p.S570F	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	573					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TCAGAAACATCCAGTTCACCA	0.443													37	93					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33165256	33165256	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:33165256C>T	uc001wrq.2	+	9	3110	c.2940C>T	c.(2938-2940)TCC>TCT	p.S980S	AKAP6_uc010aml.2_Silent_p.S977S	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	980					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		ACATGGAGTCCCTTGTGATGG	0.468													24	53					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33291034	33291034	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:33291034C>T	uc001wrq.2	+	13	4185	c.4015C>T	c.(4015-4017)CTT>TTT	p.L1339F		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1339					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TTTGCCAGATCTTCTAGGTGG	0.433													13	41					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33291424	33291424	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:33291424G>A	uc001wrq.2	+	13	4575	c.4405G>A	c.(4405-4407)GAT>AAT	p.D1469N		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1469					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TACATTTTATGATTACTCATA	0.373													19	30					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33291465	33291465	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:33291465G>A	uc001wrq.2	+	13	4616	c.4446G>A	c.(4444-4446)ATG>ATA	p.M1482I		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1482					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AATTACCAATGATAATGAAAC	0.358													21	52					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33291974	33291974	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:33291974G>A	uc001wrq.2	+	13	5125	c.4955G>A	c.(4954-4956)CGA>CAA	p.R1652Q		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1652	Ser-rich.				protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AAGATAAAACGAAGTGTTTCT	0.423													20	60					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33292591	33292591	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:33292591G>A	uc001wrq.2	+	13	5742	c.5572G>A	c.(5572-5574)GAA>AAA	p.E1858K		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1858					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		ACGTGTCTCTGAAAATAATGG	0.353													36	68					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33293903	33293903	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:33293903C>T	uc001wrq.2	+	13	7054	c.6884C>T	c.(6883-6885)CCC>CTC	p.P2295L		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2295					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GCATTGCATCCCAGCCCCAAA	0.433													31	86					0	0	1	0	0
NPAS3	64067	broad.mit.edu	37	14	34029359	34029359	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:34029359G>A	uc001wru.2	+	5	565	c.501G>A	c.(499-501)CAG>CAA	p.Q167Q	NPAS3_uc001wrs.2_Silent_p.Q154Q|NPAS3_uc001wrt.2_Silent_p.Q135Q|NPAS3_uc001wrv.2_Silent_p.Q137Q|NPAS3_uc001wrw.2_Silent_p.Q65Q	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	167	PAS 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		CACTAAATCAGGAAGGAAAAT	0.333													23	56					0	0	1	0	0
NPAS3	64067	broad.mit.edu	37	14	34247714	34247714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:34247714G>A	uc001wru.2	+	9	1153	c.1089G>A	c.(1087-1089)GGG>GGA	p.G363G	NPAS3_uc001wrs.2_Silent_p.G350G|NPAS3_uc001wrt.2_Silent_p.G331G|NPAS3_uc001wrv.2_Silent_p.G333G	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	363	PAS 2.|PAC.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		ATATCGTAGGGAAGAGATGCT	0.468													30	67					0	0	1	0	0
NPAS3	64067	broad.mit.edu	37	14	34269257	34269257	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:34269257G>A	uc001wru.2	+	12	1808	c.1744G>A	c.(1744-1746)GAC>AAC	p.D582N	NPAS3_uc001wrs.2_Missense_Mutation_p.D569N|NPAS3_uc001wrt.2_Missense_Mutation_p.D550N|NPAS3_uc001wrv.2_Missense_Mutation_p.D552N	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	582					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		CAGCGCCAAGGACTCGGACAG	0.672													6	15					0	0	1	0	0
EAPP	55837	broad.mit.edu	37	14	35005444	35005444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:35005444G>A	uc001wsd.1	-	2	221	c.112C>T	c.(112-114)CCT>TCT	p.P38S		NM_018453	NP_060923	Q56P03	EAPP_HUMAN	E2F-associated phosphoprotein	38					negative regulation of transcription elongation from RNA polymerase II promoter|positive regulation of cell proliferation|positive regulation of transcription elongation from RNA polymerase II promoter	Golgi apparatus|nucleus|plasma membrane				ovary(1)	1	Breast(36;0.0473)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00342)|Epithelial(34;0.18)	GBM - Glioblastoma multiforme(112;0.0196)		TTTTGGTCAGGAGTTCCATGT	0.318													20	42					0	0	1	0	0
BAZ1A	11177	broad.mit.edu	37	14	35224069	35224069	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:35224069G>A	uc001wsk.2	-	26	5006	c.4438C>T	c.(4438-4440)CGT>TGT	p.R1480C	BAZ1A_uc001wsl.2_Missense_Mutation_p.R1448C	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	1480	Bromo.				chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		ACTTTTTCACGAATTATATTT	0.284													19	39					0	0	1	0	0
BAZ1A	11177	broad.mit.edu	37	14	35245491	35245491	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:35245491G>A	uc001wsk.2	-	18	3035	c.2467C>T	c.(2467-2469)CTC>TTC	p.L823F	BAZ1A_uc001wsl.2_Missense_Mutation_p.L791F	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	823	Interaction with SMARCA5.				chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		TCAATAAAGAGTCCAGGAATA	0.413													46	94					0	0	1	0	0
BAZ1A	11177	broad.mit.edu	37	14	35255033	35255033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:35255033G>A	uc001wsk.2	-	14	2349	c.1781C>T	c.(1780-1782)CCC>CTC	p.P594L	BAZ1A_uc001wsl.2_Missense_Mutation_p.P562L	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	594					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		CACTAGACTGGGATTGCTCAA	0.428													12	125					0	0	1	0	0
BAZ1A	11177	broad.mit.edu	37	14	35255046	35255046	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:35255046G>A	uc001wsk.2	-	14	2336	c.1768C>T	c.(1768-1770)CGT>TGT	p.R590C	BAZ1A_uc001wsl.2_Missense_Mutation_p.R558C	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	590					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		TTGCTCAAACGAAGCTCCATA	0.418													48	93					0	0	1	0	0
NKX2-1	7080	broad.mit.edu	37	14	36987098	36987098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:36987098G>A	uc001wtt.2	-	2	842	c.501C>T	c.(499-501)CTC>CTT	p.L167L	SFTA3_uc001wts.2_Intron|NKX2-1_uc001wtu.2_Silent_p.L197L|NKX2-1_uc001wtv.2_Silent_p.L167L|uc001wtw.1_5'Flank	NM_003317	NP_003308	P43699	NKX21_HUMAN	thyroid transcription factor 1 isoform 2	167	Homeobox.				epithelial tube branching involved in lung morphogenesis|globus pallidus development|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|thyroid gland development		protein binding|transcription regulatory region DNA binding			skin(1)	1	all_cancers(3;4.47e-51)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.165)		Lung(8;1.8e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.014)|all cancers(34;0.0366)|LUSC - Lung squamous cell carcinoma(13;0.132)	GBM - Glioblastoma multiforme(112;0.0171)		CCTGCGAGAAGAGCACCCGGC	0.672			A		NSCLC								7	15					0	0	1	0	0
SLC25A21	89874	broad.mit.edu	37	14	37180580	37180580	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:37180580G>A	uc001wtz.1	-	7	856	c.546C>T	c.(544-546)TTC>TTT	p.F182F		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	182	Helical; Name=4; (Potential).|Solcar 2.				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		AAACCATGTTGAAAACTCCAT	0.383													27	59					0	0	1	0	0
MIPOL1	145282	broad.mit.edu	37	14	37969339	37969339	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:37969339C>T	uc001wuc.2	+	13	1761	c.1258C>T	c.(1258-1260)CAA>TAA	p.Q420*	MIPOL1_uc010amr.2_RNA|MIPOL1_uc001wub.3_Nonsense_Mutation_p.Q389*|MIPOL1_uc001wud.2_Nonsense_Mutation_p.Q420*|MIPOL1_uc010ams.2_Nonsense_Mutation_p.Q420*|MIPOL1_uc001wue.2_Nonsense_Mutation_p.Q389*|MIPOL1_uc010amt.2_Nonsense_Mutation_p.Q239*	NM_138731	NP_620059	Q8TD10	MIPO1_HUMAN	mirror-image polydactyly 1	420	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(36;0.119)|Esophageal squamous(585;0.164)|Hepatocellular(127;0.213)		Lung(238;6.03e-07)|LUAD - Lung adenocarcinoma(48;2.48e-05)|Epithelial(34;0.047)|all cancers(34;0.0953)|LUSC - Lung squamous cell carcinoma(13;0.0975)|BRCA - Breast invasive adenocarcinoma(188;0.196)	GBM - Glioblastoma multiforme(112;0.0358)		TGAAAAAGTTCAAAAGTAAGT	0.358													8	39					0	0	1	0	0
SSTR1	6751	broad.mit.edu	37	14	38678933	38678933	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:38678933C>T	uc001wul.1	+	3	956	c.339C>T	c.(337-339)TTC>TTT	p.F113F	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	113	Helical; Name=2; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	GCGTGCCCTTCCTAGTCACCT	0.572													50	202					0	0	1	0	0
SSTR1	6751	broad.mit.edu	37	14	38679711	38679711	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:38679711C>T	uc001wul.1	+	3	1734	c.1117C>T	c.(1117-1119)CTG>TTG	p.L373L	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	373	Cytoplasmic (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	ACCTGAGAACCTGGAGTCCGG	0.662													15	77					0	0	1	0	0
CLEC14A	161198	broad.mit.edu	37	14	38723952	38723952	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:38723952G>A	uc001wum.1	-	1	1623	c.1276C>T	c.(1276-1278)CAC>TAC	p.H426Y		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	426	Cytoplasmic (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GGGCTTTCGTGAAAGCAGAGC	0.562													25	32					0	0	1	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724262	38724262	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:38724262C>T	uc001wum.1	-	1	1313	c.966G>A	c.(964-966)AGG>AGA	p.R322R		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	322	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		TCTCGTCGACCCTGATTGGCC	0.607													44	119					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	39304870	39304870	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:39304870G>A	uc001wun.2	-	3		c.3691C>T			uc001wuo.2_RNA|uc010amw.1_RNA					Homo sapiens cDNA FLJ43028 fis, clone BRTHA3000297.																		TAATGGAGGTGGATCTTTAAG	0.488													11	21					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	39304962	39304962	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:39304962C>T	uc001wun.2	-	3		c.3599G>A			uc001wuo.2_RNA|uc010amw.1_RNA					Homo sapiens cDNA FLJ43028 fis, clone BRTHA3000297.																		GAAGGCCTTTCGGCACAGCTT	0.552													4	18					0	0	1	0	0
SEC23A	10484	broad.mit.edu	37	14	39510025	39510025	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:39510025G>A	uc001wup.1	-	18	2276	c.2053C>T	c.(2053-2055)CTG>TTG	p.L685L	SEC23A_uc010tqa.1_Silent_p.L571L|SEC23A_uc010tqb.1_Silent_p.L656L	NM_006364	NP_006355	Q15436	SC23A_HUMAN	SEC23-related protein A	685					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|Golgi membrane|smooth endoplasmic reticulum membrane	protein binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5	Hepatocellular(127;0.213)		Lung(238;0.00047)|LUAD - Lung adenocarcinoma(48;0.000565)	GBM - Glioblastoma multiforme(112;0.0151)		GGGGCTTGCAGAAGGTGGCGG	0.418													22	89					0	0	1	0	0
MIA2	117153	broad.mit.edu	37	14	39717177	39717177	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:39717177C>T	uc001wux.2	+	4	1593	c.1399C>T	c.(1399-1401)CCT>TCT	p.P467S	MIA2_uc010amy.1_Missense_Mutation_p.P398S	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	467						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TTTTGACAACCCTTGGAACTT	0.323													40	83					0	0	1	0	0
MIA2	117153	broad.mit.edu	37	14	39721990	39721990	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:39721990G>A	uc001wux.2	+	5	1800	c.1606G>A	c.(1606-1608)GAA>AAA	p.E536K		NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	145						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		GAGAATTCACGAAGAAGTATA	0.378													27	89					0	0	1	0	0
CTAGE5	4253	broad.mit.edu	37	14	39796071	39796071	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:39796071C>T	uc001wvg.3	+	20	2012	c.1676C>T	c.(1675-1677)TCA>TTA	p.S559L	CTAGE5_uc010tqe.1_Missense_Mutation_p.S521L|CTAGE5_uc001wuz.3_Missense_Mutation_p.S547L|CTAGE5_uc001wuy.3_Missense_Mutation_p.S479L|CTAGE5_uc001wvb.3_Missense_Mutation_p.S487L|CTAGE5_uc001wvc.3_Missense_Mutation_p.S461L|CTAGE5_uc001wva.3_Missense_Mutation_p.S530L|CTAGE5_uc001wvh.3_Missense_Mutation_p.S516L|CTAGE5_uc001wvf.3_Missense_Mutation_p.S484L|CTAGE5_uc001wvi.3_Missense_Mutation_p.S564L|CTAGE5_uc010amz.2_Missense_Mutation_p.S175L|CTAGE5_uc001wvj.3_Missense_Mutation_p.S530L	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	559	Pro-rich.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		TAATTAGGCTCACGAGGCCCA	0.358													21	93					0	0	1	0	0
CTAGE5	4253	broad.mit.edu	37	14	39817998	39817998	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:39817998C>T	uc001wvg.3	+	23	2401	c.2065C>T	c.(2065-2067)CCT>TCT	p.P689S	CTAGE5_uc001wuz.3_Missense_Mutation_p.P677S|CTAGE5_uc001wuy.3_Missense_Mutation_p.P609S|CTAGE5_uc001wvb.3_Missense_Mutation_p.P617S|CTAGE5_uc001wvc.3_Missense_Mutation_p.P591S|CTAGE5_uc001wva.3_Missense_Mutation_p.P660S|CTAGE5_uc001wvh.3_Missense_Mutation_p.P646S|CTAGE5_uc001wvf.3_Missense_Mutation_p.P614S|CTAGE5_uc001wvi.3_Missense_Mutation_p.P694S|CTAGE5_uc010amz.2_Missense_Mutation_p.P305S|CTAGE5_uc001wvj.3_Missense_Mutation_p.P660S	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	689	Pro-rich.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		AGCCACTGGCCCTGGCTTTGT	0.463													47	360					0	0	1	0	0
LRFN5	145581	broad.mit.edu	37	14	42356729	42356729	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:42356729G>A	uc001wvm.2	+	3	2099	c.901G>A	c.(901-903)GGA>AGA	p.G301R	LRFN5_uc010ana.2_Missense_Mutation_p.G301R	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	301	Extracellular (Potential).|Ig-like.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		AGTCCTGGAGGGACAAAGGGC	0.468										HNSCC(30;0.082)			41	97					0	0	1	0	0
LRFN5	145581	broad.mit.edu	37	14	42356895	42356895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:42356895C>T	uc001wvm.2	+	3	2265	c.1067C>T	c.(1066-1068)ACC>ATC	p.T356I	LRFN5_uc010ana.2_Missense_Mutation_p.T356I	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	356	Extracellular (Potential).|Ig-like.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		GGTGCTTTTACCTGCATTGCT	0.393										HNSCC(30;0.082)			43	91					0	0	1	0	0
LRFN5	145581	broad.mit.edu	37	14	42368140	42368140	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:42368140G>A	uc001wvm.2	+	5	3317	c.2119G>A	c.(2119-2121)GAC>AAC	p.D707N	LRFN5_uc010ana.2_3'UTR	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	707	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		GACTAATGTTGACCAGATTGT	0.284										HNSCC(30;0.082)			19	132					0	0	1	0	0
FSCB	84075	broad.mit.edu	37	14	44974300	44974301	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:44974300_44974301GG>AA	uc001wvn.2	-	1	2199_2200	c.1890_1891CC>TT	c.(1888-1893)GCCCCC>GCTTCC	p.P631S		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	631	Ala-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		ACTTCAGCGGGGGCCTCCTCAG	0.639													5	27					0	0	1	0	0
FSCB	84075	broad.mit.edu	37	14	44974582	44974582	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:44974582C>T	uc001wvn.2	-	1	1918	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	537	Ala-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		GCAGGAGTTTCATCTGCAGGA	0.488													20	29					0	0	1	0	0
FSCB	84075	broad.mit.edu	37	14	44975176	44975176	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:44975176C>T	uc001wvn.2	-	1	1324	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	339	Pro-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		GGAGACTCTTCAGCTGATGGA	0.517													33	117					0	0	1	0	0
FSCB	84075	broad.mit.edu	37	14	44975656	44975656	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:44975656C>T	uc001wvn.2	-	1	844	c.535G>A	c.(535-537)GAA>AAA	p.E179K		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	179						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		AGGGCATCTTCCTTTGACTTT	0.398													73	186					0	0	1	0	0
FAM179B	23116	broad.mit.edu	37	14	45475275	45475276	+	Silent	DNP	CC	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:45475275_45475276CC>TA	uc001wvv.2	+	5	2918_2919	c.2709_2710CC>TA	c.(2707-2712)TCCCGA>TCTAGA	p.903_904SR>SR	FAM179B_uc001wvw.2_Silent_p.903_904SR>SR|FAM179B_uc010anc.2_RNA|FAM179B_uc001wvu.2_Silent_p.903_904SR>SR	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	903_904							binding			skin(2)|upper_aerodigestive_tract(1)	3						CGCCATCTTCCCGACGAGGTCT	0.416													42	146					0	0	1	0	0
FKBP3	2287	broad.mit.edu	37	14	45603624	45603624	+	Silent	SNP	C	T	T	rs28366026		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:45603624C>T	uc010tqf.1	-	1	109	c.36G>A	c.(34-36)GTG>GTA	p.V12V	FANCM_uc001wwc.2_5'Flank|FANCM_uc001wwd.3_5'Flank|FANCM_uc010anf.2_5'Flank	NM_002013	NP_002004	Q00688	FKBP3_HUMAN	FK506 binding protein 3, 25kDa	12					protein folding	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|receptor activity				0						GCAGCTGCTCCACGGTCCACG	0.662													21	79					0	0	1	0	0
RPL10L	140801	broad.mit.edu	37	14	47120366	47120366	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:47120366G>A	uc001wwg.2	-	1	663	c.574C>T	c.(574-576)CCT>TCT	p.P192S		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	192					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						CAACCATCAGGGATGAGGCAC	0.517													41	83					0	0	1	0	0
RPL10L	140801	broad.mit.edu	37	14	47120402	47120402	+	Missense_Mutation	SNP	C	T	T	rs61745038	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:47120402C>T	uc001wwg.2	-	1	627	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	180					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						TCTTCAAATTCGTCAGCATTA	0.517													50	99					0	0	1	0	0
MDGA2	161357	broad.mit.edu	37	14	47601016	47601016	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:47601016G>A	uc001wwj.3	-	5	815	c.619C>T	c.(619-621)CGA>TGA	p.R207*	MDGA2_uc001wwi.3_5'UTR|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	207	Ig-like 2.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						TCCTGAGGTCGAAGATTCTTT	0.333													19	44					0	0	1	0	0
KLHDC1	122773	broad.mit.edu	37	14	50210498	50210498	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:50210498C>T	uc001www.2	+	12	1037	c.1009C>T	c.(1009-1011)CAA>TAA	p.Q337*	SDCCAG1_uc010anj.1_Intron|KLHDC1_uc010tqg.1_Nonsense_Mutation_p.Q292*|KLHDC1_uc010tqh.1_Nonsense_Mutation_p.Q252*	NM_172193	NP_751943	Q8N7A1	KLDC1_HUMAN	kelch domain containing 1	337	Kelch 6.					cytoplasm				pancreas(1)	1	all_epithelial(31;0.00244)|Breast(41;0.00964)					ATTGATCTTTCAAACACAGCC	0.259													15	46					0	0	1	0	0
SOS2	6655	broad.mit.edu	37	14	50600952	50600952	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:50600952G>A	uc001wxs.3	-	19	3062	c.2964C>T	c.(2962-2964)TTC>TTT	p.F988F	SOS2_uc010tql.1_Silent_p.F955F	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	988	Ras-GEF.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					GGTTTTCAAAGAATCTCTGGA	0.289													68	173					0	0	1	0	0
CDKL1	8814	broad.mit.edu	37	14	50844978	50844978	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:50844978C>T	uc010anu.1	-	9	1271	c.1271G>A	c.(1270-1272)GGA>GAA	p.G424E	CDKL1_uc001wxz.2_Intron	NM_004196	NP_004187	Q00532	CDKL1_HUMAN	cyclin-dependent kinase-like 1	Error:Variant_position_missing_in_Q00532_after_alignment						cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(1)|stomach(1)	2	all_epithelial(31;0.000746)|Breast(41;0.0102)					taccccacctccttctagggc	0													21	21					0	0	1	0	0
MAP4K5	11183	broad.mit.edu	37	14	50912805	50912805	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:50912805G>A	uc001wya.2	-	17	1497	c.1177C>T	c.(1177-1179)CCT>TCT	p.P393S	MAP4K5_uc001wyb.2_Missense_Mutation_p.P393S|MAP4K5_uc010anv.1_Missense_Mutation_p.P393S|MAP4K5_uc001wyc.1_Missense_Mutation_p.P67S	NM_006575	NP_006566	Q9Y4K4	M4K5_HUMAN	mitogen-activated protein kinase kinase kinase	393					activation of JUN kinase activity	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(1)	1	all_epithelial(31;0.000415)|Breast(41;0.0102)					ACCTTAGGAGGTAGGGGAGGT	0.279													5	35					0	0	1	0	0
ATL1	51062	broad.mit.edu	37	14	51054558	51054558	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51054558C>T	uc001wyf.3	+	2	285	c.44C>T	c.(43-45)TCG>TTG	p.S15L	ATL1_uc001wyd.3_Missense_Mutation_p.S15L|ATL1_uc001wye.3_Missense_Mutation_p.S15L	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	15	Cytoplasmic.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						GGTGGATTTTCGGAAAAGACA	0.433													26	61					0	0	1	0	0
ATL1	51062	broad.mit.edu	37	14	51054653	51054653	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51054653G>A	uc001wyf.3	+	2	380	c.139G>A	c.(139-141)GAG>AAG	p.E47K	ATL1_uc001wyd.3_Missense_Mutation_p.E47K|ATL1_uc001wye.3_Missense_Mutation_p.E47K	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	47	Cytoplasmic.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						CCATTCCTTTGAGTTAGATGA	0.438													57	139					0	0	1	0	0
SAV1	60485	broad.mit.edu	37	14	51132005	51132005	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51132005G>A	uc001wyg.1	-	3	588	c.427C>T	c.(427-429)CAG>TAG	p.Q143*	SAV1_uc001wyh.1_Nonsense_Mutation_p.Q143*	NM_021818	NP_068590	Q9H4B6	SAV1_HUMAN	WW45 protein	143					hippo signaling cascade	cytoplasm|nucleus	identical protein binding			breast(1)	1	all_epithelial(31;0.000611)|Breast(41;0.0333)					CGCTTTCTCTGACCATCAAAA	0.403													31	67					0	0	1	0	0
NIN	51199	broad.mit.edu	37	14	51224954	51224954	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51224954G>A	uc001wym.2	-	18	2985	c.2794C>T	c.(2794-2796)CTG>TTG	p.L932L	NIN_uc001wyi.2_Silent_p.L932L|NIN_uc001wyj.2_Intron|NIN_uc001wyk.2_Intron|NIN_uc010tqp.1_Silent_p.L938L|NIN_uc001wyo.2_Silent_p.L932L	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	932	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					TCAGACAGCAGGCTTTGCTGG	0.517			T	PDGFRB	MPD								49	124					0	0	1	0	0
NIN	51199	broad.mit.edu	37	14	51243806	51243806	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51243806G>A	uc001wym.2	-	7	718	c.527C>T	c.(526-528)TCT>TTT	p.S176F	NIN_uc001wyi.2_Missense_Mutation_p.S176F|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.S176F|NIN_uc010tqp.1_Missense_Mutation_p.S182F|NIN_uc001wyo.2_Missense_Mutation_p.S176F|NIN_uc001wyp.1_Missense_Mutation_p.S138F	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	176					centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					GGGAGGGGAAGATCCACTCTG	0.478			T	PDGFRB	MPD								26	85					0	0	1	0	0
PYGL	5836	broad.mit.edu	37	14	51375642	51375642	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51375642G>A	uc001wyu.2	-	18	2336	c.2209C>T	c.(2209-2211)CCA>TCA	p.P737S	PYGL_uc010tqq.1_Missense_Mutation_p.P703S|PYGL_uc001wyv.2_Missense_Mutation_p.P411S|PYGL_uc001wyt.2_5'Flank	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	737					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	TTCAGCTCTGGAAGTGCCTCA	0.418													37	113					0	0	1	0	0
PYGL	5836	broad.mit.edu	37	14	51376660	51376660	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51376660G>A	uc001wyu.2	-	17	2257	c.2130C>T	c.(2128-2130)TTC>TTT	p.F710F	PYGL_uc010tqq.1_Silent_p.F676F|PYGL_uc001wyv.2_Silent_p.F384F|PYGL_uc001wyt.2_5'Flank	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	710					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	TGCCAAAGATGAACAGGTTCT	0.502													119	288					0	0	1	0	0
PYGL	5836	broad.mit.edu	37	14	51379771	51379771	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51379771G>A	uc001wyu.2	-	13	1723	c.1596C>T	c.(1594-1596)CTC>CTT	p.L532L	PYGL_uc010tqq.1_Silent_p.L498L|PYGL_uc001wyv.2_Silent_p.L206L	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	532					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	CGAGTTCCCGGAGGAAGACAT	0.468													19	43					0	0	1	0	0
PYGL	5836	broad.mit.edu	37	14	51382068	51382068	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51382068G>A	uc001wyu.2	-	11	1516	c.1389C>T	c.(1387-1389)ATC>ATT	p.I463I	PYGL_uc010tqq.1_Silent_p.I429I|PYGL_uc001wyv.2_Silent_p.I137I	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	463					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	TAGTCTTCACGATGTCTGAGT	0.473													17	200					0	0	1	0	0
PYGL	5836	broad.mit.edu	37	14	51382209	51382209	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51382209C>T	uc001wyu.2	-	11	1375	c.1248G>A	c.(1246-1248)GTG>GTA	p.V416V	PYGL_uc010tqq.1_Silent_p.V382V|PYGL_uc001wyv.2_Silent_p.V90V	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	416					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	GAAACAAGGCCACAATTCTCT	0.448													25	68					0	0	1	0	0
PYGL	5836	broad.mit.edu	37	14	51382663	51382663	+	Silent	SNP	G	A	A	rs151022264		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51382663G>A	uc001wyu.2	-	10	1246	c.1119C>T	c.(1117-1119)TTC>TTT	p.F373F	PYGL_uc010tqq.1_Silent_p.F339F|PYGL_uc001wyv.2_Silent_p.F47F|PYGL_uc010anz.1_Silent_p.F179F	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	373					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	TGGTGTAGGCGAAGGTCTTCT	0.592													11	60					0	0	1	0	0
PYGL	5836	broad.mit.edu	37	14	51383417	51383417	+	Silent	SNP	G	A	A	rs139544303		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51383417G>A	uc001wyu.2	-	9	1162	c.1035C>T	c.(1033-1035)CTC>CTT	p.L345L	PYGL_uc010tqq.1_Silent_p.L311L|PYGL_uc001wyv.2_Silent_p.L19L|PYGL_uc010anz.1_Silent_p.L148L	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	345				AL -> RI (in Ref. 1; AAA52577).	glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	CAGGGATCGCGAGTGCAGGGT	0.483													39	73					0	0	1	0	0
TRIM9	114088	broad.mit.edu	37	14	51446170	51446170	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51446170G>A	uc001wyx.3	-	9	2770	c.2005C>T	c.(2005-2007)CCC>TCC	p.P669S	TRIM9_uc001wyy.2_Missense_Mutation_p.P750S	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	669	B30.2/SPRY.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					AATGCTATGGGACCTTGTTGT	0.488													78	166					0	0	1	0	0
TRIM9	114088	broad.mit.edu	37	14	51448530	51448530	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51448530G>A	uc001wyx.3	-	8	2660	c.1895C>T	c.(1894-1896)TCG>TTG	p.S632L	TRIM9_uc001wyy.2_Missense_Mutation_p.S713L	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	632	B30.2/SPRY.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					GTTGGTGTGCGAGTTGTTGTG	0.498													45	119					0	0	1	0	0
TRIM9	114088	broad.mit.edu	37	14	51464813	51464813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51464813C>T	uc001wyx.3	-	7	2323	c.1558G>A	c.(1558-1560)GGA>AGA	p.G520R	TRIM9_uc001wyy.2_Missense_Mutation_p.G516R|TRIM9_uc001wyz.3_Missense_Mutation_p.G520R	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	520	Fibronectin type-III.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					GGGCTGACTCCTGTTTTGTTG	0.537													10	50					0	0	1	0	0
TRIM9	114088	broad.mit.edu	37	14	51464870	51464871	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:51464870_51464871CC>TT	uc001wyx.3	-	7	2265_2266	c.1500_1501GG>AA	c.(1498-1503)GTGGAT>GTAAAT	p.D501N	TRIM9_uc001wyy.2_Missense_Mutation_p.D497N|TRIM9_uc001wyz.3_Missense_Mutation_p.D501N	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	501	Fibronectin type-III.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					TGAAGACCATCCACAGTGCACA	0.54													21	67					0	0	1	0	0
GNG2	54331	broad.mit.edu	37	14	52433336	52433336	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52433336C>T	uc001wzi.2	+	4	676	c.147C>T	c.(145-147)CCC>CCT	p.P49P	GNG2_uc001wzh.2_RNA|GNG2_uc010aoc.1_RNA|GNG2_uc001wzj.2_RNA|GNG2_uc001wzk.2_Silent_p.P49P	NM_053064	NP_444292	P59768	GBG2_HUMAN	guanine nucleotide binding protein (G protein),	49					cellular response to glucagon stimulus|energy reserve metabolic process|platelet activation|synaptic transmission	heterotrimeric G-protein complex	protein binding|signal transducer activity				0	all_epithelial(31;0.0659)|Breast(41;0.0684)				Halothane(DB01159)	AGGAAGACCCCCTCCTGACCC	0.502													43	136					0	0	1	0	0
C14orf166	51637	broad.mit.edu	37	14	52458057	52458057	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52458057C>T	uc010aod.2	+	2	214	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_016039	NP_057123	Q9Y224	CN166_HUMAN	homeobox prox 1	28						microtubule organizing center|nucleus|perinuclear region of cytoplasm|tRNA-splicing ligase complex	identical protein binding				0	Breast(41;0.0639)|all_epithelial(31;0.101)					TTAGAAACTTCATCGTTTGGC	0.353													5	61					0	0	1	0	0
C14orf166	51637	broad.mit.edu	37	14	52460467	52460467	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52460467C>T	uc010aod.2	+	3	343	c.213C>T	c.(211-213)TTC>TTT	p.F71F		NM_016039	NP_057123	Q9Y224	CN166_HUMAN	homeobox prox 1	71						microtubule organizing center|nucleus|perinuclear region of cytoplasm|tRNA-splicing ligase complex	identical protein binding				0	Breast(41;0.0639)|all_epithelial(31;0.101)					ACTGTCCTTTCAAGATTCAAG	0.373													20	62					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52495482	52495482	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52495482G>A	uc001wzo.2	-	11	2722	c.2488C>T	c.(2488-2490)CGG>TGG	p.R830W	NID2_uc010tqs.1_Missense_Mutation_p.R830W|NID2_uc010tqt.1_Missense_Mutation_p.R830W|NID2_uc001wzp.2_Missense_Mutation_p.R830W	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	830	EGF-like 3; calcium-binding (Potential).					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					TAACCACTCCGGCACTCACAC	0.443													23	38					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52496389	52496389	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52496389C>T	uc001wzo.2	-	10	2511	c.2277G>A	c.(2275-2277)CCG>CCA	p.P759P	NID2_uc010tqs.1_Silent_p.P759P|NID2_uc010tqt.1_Silent_p.P759P|NID2_uc001wzp.2_Silent_p.P759P	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	759	EGF-like 2.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					AAGGATTCCCCGGAGTGGGGT	0.517													8	40					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52508883	52508883	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52508883G>A	uc001wzo.2	-	7	1999	c.1765C>T	c.(1765-1767)CTG>TTG	p.L589L	NID2_uc010tqs.1_Silent_p.L589L|NID2_uc010tqt.1_Silent_p.L589L|NID2_uc001wzp.2_Silent_p.L589L	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	589	Nidogen G2 beta-barrel.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					CAGCCAAACAGGCCTCCAATT	0.582													79	138					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52520434	52520434	+	Missense_Mutation	SNP	G	A	A	rs142884639	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52520434G>A	uc001wzo.2	-	5	1526	c.1292C>T	c.(1291-1293)TCG>TTG	p.S431L	NID2_uc010tqs.1_Missense_Mutation_p.S431L|NID2_uc010tqt.1_Missense_Mutation_p.S431L|NID2_uc001wzp.2_Missense_Mutation_p.S431L	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	431						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					ATCCATTTCCGAAGGCACTGG	0.537													41	86					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52521021	52521021	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52521021G>A	uc001wzo.2	-	4	1020	c.786C>T	c.(784-786)ATC>ATT	p.I262I	NID2_uc010tqs.1_Silent_p.I262I|NID2_uc010tqt.1_Silent_p.I262I|NID2_uc001wzp.2_Silent_p.I262I	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	262	NIDO.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					ACACTCCAGGGATCCCCAGGT	0.483													8	42					0	0	1	0	0
PTGER2	5732	broad.mit.edu	37	14	52781635	52781635	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52781635G>A	uc001wzr.2	+	1	620	c.369G>A	c.(367-369)ACG>ACA	p.T123T		NM_000956	NP_000947	P43116	PE2R2_HUMAN	prostaglandin E receptor 2 (subtype EP2), 53kDa	123	Helical; Name=3; (Potential).					integral to plasma membrane	prostaglandin E receptor activity			lung(1)|breast(1)	2	Breast(41;0.0639)|all_epithelial(31;0.0729)				Alprostadil(DB00770)|Iloprost(DB01088)	GCCTGGCCACGATGCTCATGC	0.677													29	84					0	0	1	0	0
PTGER2	5732	broad.mit.edu	37	14	52781677	52781677	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:52781677G>A	uc001wzr.2	+	1	662	c.411G>A	c.(409-411)TCG>TCA	p.S137S		NM_000956	NP_000947	P43116	PE2R2_HUMAN	prostaglandin E receptor 2 (subtype EP2), 53kDa	137	Cytoplasmic (Potential).					integral to plasma membrane	prostaglandin E receptor activity			lung(1)|breast(1)	2	Breast(41;0.0639)|all_epithelial(31;0.0729)				Alprostadil(DB00770)|Iloprost(DB01088)	GCTACCTCTCGATCGGGCACC	0.652													14	140					0	0	1	0	0
ERO1L	30001	broad.mit.edu	37	14	53149110	53149110	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:53149110G>A	uc001wzv.2	-	3	477	c.251C>T	c.(250-252)CCG>CTG	p.P84L	ERO1L_uc001wzw.2_RNA|ERO1L_uc010aof.2_RNA	NM_014584	NP_055399	Q96HE7	ERO1A_HUMAN	ERO1-like precursor	84					chaperone mediated protein folding requiring cofactor|electron transport chain|protein thiol-disulfide exchange|response to temperature stimulus|transport	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome	disulfide oxidoreductase activity|flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor				0	Breast(41;0.226)					GAAAGGACACGGCCTCTTCAG	0.328													35	106					0	0	1	0	0
FERMT2	10979	broad.mit.edu	37	14	53326422	53326422	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:53326422C>T	uc001xad.2	-	14	1793	c.1738G>A	c.(1738-1740)GGC>AGC	p.G580S	FERMT2_uc001xac.2_Missense_Mutation_p.G587S|FERMT2_uc001xae.2_Missense_Mutation_p.G580S|FERMT2_uc001xaf.2_Missense_Mutation_p.G587S	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	580	FERM.				actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					TCTTTTTTGCCCCCTTGGAAC	0.398													7	27					0	0	1	0	0
FERMT2	10979	broad.mit.edu	37	14	53327118	53327118	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:53327118C>T	uc001xad.2	-	13	1723	c.1668G>A	c.(1666-1668)ATG>ATA	p.M556I	FERMT2_uc001xac.2_Missense_Mutation_p.M563I|FERMT2_uc001xae.2_Missense_Mutation_p.M556I|FERMT2_uc001xaf.2_Missense_Mutation_p.M563I	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	556	FERM.				actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					GAATAAATCTCATCTTGGCTT	0.403													9	54					0	0	1	0	0
FERMT2	10979	broad.mit.edu	37	14	53347812	53347812	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:53347812T>C	uc001xad.2	-	6	852	c.797A>G	c.(796-798)GAA>GGA	p.E266G	FERMT2_uc001xac.2_Missense_Mutation_p.E266G|FERMT2_uc001xae.2_Missense_Mutation_p.E266G|FERMT2_uc001xaf.2_Missense_Mutation_p.E266G	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	266	FERM.				actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					GGCCTCATTTTCCTTCACATC	0.368													18	62					0	0	1	0	0
BMP4	652	broad.mit.edu	37	14	54418878	54418878	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:54418878C>T	uc001xal.3	-	2	250	c.63G>A	c.(61-63)GCG>GCA	p.A21A	BMP4_uc010aoh.2_Silent_p.A21A|BMP4_uc001xao.3_Silent_p.A21A|BMP4_uc001xan.3_Silent_p.A21A	NM_130851	NP_570912	P12644	BMP4_HUMAN	bone morphogenetic protein 4 preproprotein	21					activation of MAPKK activity|blood vessel endothelial cell proliferation involved in sprouting angiogenesis|BMP signaling pathway involved in heart induction|BMP signaling pathway involved in nephric duct formation|branching involved in ureteric bud morphogenesis|bronchus development|bud dilation involved in lung branching|cardiac septum development|cartilage development|endocardial cushion development|epithelial cell proliferation involved in lung morphogenesis|intermediate mesodermal cell differentiation|lung alveolus development|lymphoid progenitor cell differentiation|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway|negative regulation of branching involved in ureteric bud morphogenesis|negative regulation of cell proliferation involved in heart morphogenesis|negative regulation of glomerular mesangial cell proliferation|negative regulation of glomerulus development|negative regulation of immature T cell proliferation in thymus|negative regulation of MAP kinase activity|negative regulation of metanephric comma-shaped body morphogenesis|negative regulation of metanephric S-shaped body morphogenesis|negative regulation of mitosis|negative regulation of myoblast differentiation|negative regulation of phosphorylation|negative regulation of striated muscle tissue development|negative regulation of thymocyte apoptosis|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cardiac muscle fiber development|positive regulation of cartilage development|positive regulation of collagen biosynthetic process|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of kidney development|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|protein localization to nucleus|pulmonary artery endothelial tube morphogenesis|secondary heart field specification|SMAD protein signal transduction|specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway|steroid hormone mediated signaling pathway	extracellular space|proteinaceous extracellular matrix	BMP receptor binding|chemoattractant activity|cytokine activity|growth factor activity				0						TAGCATGGCTCGCGCCTCCTA	0.567													23	64					0	0	1	0	0
SAMD4A	23034	broad.mit.edu	37	14	55168827	55168827	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:55168827C>T	uc001xbb.2	+	2	242	c.241C>T	c.(241-243)CTC>TTC	p.L81F	SAMD4A_uc001xba.2_Missense_Mutation_p.L81F|SAMD4A_uc001xbc.2_Missense_Mutation_p.L81F|SAMD4A_uc001xbf.1_RNA|SAMD4A_uc001xbe.2_5'UTR	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	82					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						AGTGATTTCCCTCCTGTTAAC	0.423													15	65					0	0	1	0	0
TBPL2	387332	broad.mit.edu	37	14	55903341	55903341	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:55903341G>A	uc001xby.2	-	2	546	c.546C>T	c.(544-546)TCC>TCT	p.S182S		NM_199047	NP_950248	Q6SJ96	TBPL2_HUMAN	TATA box binding protein like 2	182					multicellular organismal development|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding				0						TGGGAGTTATGGATGCCAGAG	0.438													42	73					0	0	1	0	0
TBPL2	387332	broad.mit.edu	37	14	55903639	55903639	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:55903639G>A	uc001xby.2	-	2	248	c.248C>T	c.(247-249)TCG>TTG	p.S83L		NM_199047	NP_950248	Q6SJ96	TBPL2_HUMAN	TATA box binding protein like 2	83					multicellular organismal development|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding				0						TTCAGGGTTCGAATTAAATGC	0.448													28	97					0	0	1	0	0
RPL13AP3	645683	broad.mit.edu	37	14	56233097	56233097	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:56233097G>A	uc010aos.2	+	1		c.135G>A				NR_004844				Homo sapiens ribosomal protein L13a pseudogene, mRNA (cDNA clone IMAGE:5271409).												0						AACCCTTTTCGAAGCGCCTAC	0.572													7	18					0	0	1	0	0
PELI2	57161	broad.mit.edu	37	14	56763866	56763866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:56763866C>T	uc001xch.2	+	6	1531	c.1245C>T	c.(1243-1245)TTC>TTT	p.F415F		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	415					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						AATTAATTTTCCAAGGTCCAA	0.433													4	25					0	0	1	0	0
OTX2	5015	broad.mit.edu	37	14	57268695	57268695	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:57268695G>A	uc001xcp.2	-	3	799	c.628C>T	c.(628-630)CAC>TAC	p.H210Y	OTX2_uc010aou.2_Missense_Mutation_p.H210Y|OTX2_uc001xcq.2_Missense_Mutation_p.H218Y	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	210					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					GGAAGCTGGTGATGCATAGGG	0.522													20	47					0	0	1	0	0
OTX2	5015	broad.mit.edu	37	14	57270922	57270922	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:57270922G>A	uc001xcp.2	-	2	404	c.233C>T	c.(232-234)CCC>CTC	p.P78L	OTX2_uc010aou.2_Missense_Mutation_p.P78L|OTX2_uc001xcq.2_Missense_Mutation_p.P86L	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	78	Homeobox.				axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					CCTCGACTCGGGCAAGTTGAT	0.567													12	58					0	0	1	0	0
C14orf105	55195	broad.mit.edu	37	14	57947410	57947410	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:57947410C>T	uc001xcy.2	-	5	701	c.558G>A	c.(556-558)AGG>AGA	p.R186R	C14orf105_uc010trl.1_Silent_p.R185R|C14orf105_uc010trm.1_Silent_p.R97R|C14orf105_uc010trn.1_Silent_p.R97R|C14orf105_uc001xcz.2_Silent_p.R185R|C14orf105_uc010aox.1_RNA|C14orf105_uc010aoy.1_Silent_p.R107R	NM_018168	NP_060638	Q9NVL8	CN105_HUMAN	hypothetical protein LOC55195	186											0						CTTTATGGTCCCTTGGACTTT	0.418													50	121					0	0	1	0	0
SLC35F4	341880	broad.mit.edu	37	14	58036612	58036612	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:58036612G>A	uc001xdb.1	-	6	1128	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Silent_p.F217F	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						TGAAGGAGATGAAGATCAAAT	0.483													4	12					0	0	1	0	0
SLC35F4	341880	broad.mit.edu	37	14	58055936	58055936	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:58055936G>A	uc001xdb.1	-	3	693	c.693C>T	c.(691-693)TTC>TTT	p.F231F	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Silent_p.F72F	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						AAACCTACCTGAATTTTTTCA	0.338													30	77					0	0	1	0	0
SLC35F4	341880	broad.mit.edu	37	14	58063569	58063569	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:58063569C>T	uc001xdb.1	-	1	47	c.47G>A	c.(46-48)AGG>AAG	p.R16K	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_5'UTR	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						TGCCAGCTGCCTCCCACTGGT	0.413													13	29					0	0	1	0	0
C14orf37	145407	broad.mit.edu	37	14	58563491	58563491	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:58563491G>A	uc001xdc.2	-	5	2151	c.2040C>T	c.(2038-2040)ACC>ACT	p.T680T	C14orf37_uc010tro.1_Silent_p.T718T|C14orf37_uc001xdd.2_Silent_p.T680T	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	680	Extracellular (Potential).					integral to membrane	binding				0						GCACCTGGTAGGTAGCTCCCT	0.527													19	34					0	0	1	0	0
C14orf37	145407	broad.mit.edu	37	14	58604792	58604792	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:58604792C>T	uc001xdc.2	-	2	1396	c.1285G>A	c.(1285-1287)GAT>AAT	p.D429N	C14orf37_uc010tro.1_Missense_Mutation_p.D467N|C14orf37_uc001xdd.2_Missense_Mutation_p.D429N|C14orf37_uc001xde.2_Missense_Mutation_p.D429N	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	429	Extracellular (Potential).					integral to membrane	binding				0						AACAGGGCATCGTTTTCCTTG	0.413													16	84					0	0	1	0	0
C14orf37	145407	broad.mit.edu	37	14	58606038	58606038	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:58606038G>A	uc001xdc.2	-	2	150	c.39C>T	c.(37-39)TTC>TTT	p.F13F	C14orf37_uc010tro.1_Silent_p.F51F|C14orf37_uc001xdd.2_Silent_p.F13F|C14orf37_uc001xde.2_Silent_p.F13F	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	13						integral to membrane	binding				0						GAAGGCTACAGAAAGCCAGAC	0.473													39	68					0	0	1	0	0
DACT1	51339	broad.mit.edu	37	14	59112786	59112786	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:59112786C>T	uc001xdw.2	+	4	1609	c.1445C>T	c.(1444-1446)TCA>TTA	p.S482L	DACT1_uc010trv.1_Missense_Mutation_p.S201L|DACT1_uc001xdx.2_Missense_Mutation_p.S445L|DACT1_uc010trw.1_Missense_Mutation_p.S201L	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	482					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						GCTCAGCTCTCAGGGGCCTCT	0.567													42	106					0	0	1	0	0
DACT1	51339	broad.mit.edu	37	14	59113078	59113078	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:59113078G>A	uc001xdw.2	+	4	1901	c.1737G>A	c.(1735-1737)GTG>GTA	p.V579V	DACT1_uc010trv.1_Silent_p.V298V|DACT1_uc001xdx.2_Silent_p.V542V|DACT1_uc010trw.1_Silent_p.V298V	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	579					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						TGGGCGTCGTGAAGAACTCCA	0.662													9	26					0	0	1	0	0
DACT1	51339	broad.mit.edu	37	14	59113756	59113756	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:59113756C>T	uc001xdw.2	+	4	2579	c.2415C>T	c.(2413-2415)CCC>CCT	p.P805P	DACT1_uc010trv.1_Silent_p.P524P|DACT1_uc001xdx.2_Silent_p.P768P|DACT1_uc010trw.1_Silent_p.P524P	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	805					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						ACAACCACCCCGCAAAAACCT	0.502													30	99					0	0	1	0	0
JKAMP	51528	broad.mit.edu	37	14	59954436	59954436	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:59954436G>A	uc001xei.3	+	3	685	c.183G>A	c.(181-183)CAG>CAA	p.Q61Q	JKAMP_uc001xef.3_Silent_p.Q47Q|JKAMP_uc001xeh.3_Silent_p.Q41Q|JKAMP_uc001xeg.3_Silent_p.Q55Q|JKAMP_uc010try.1_5'UTR|JKAMP_uc001xej.3_5'UTR	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	62	Lumenal (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						AATATTGTCAGCCTTGCACAG	0.358													88	193					0	0	1	0	0
JKAMP	51528	broad.mit.edu	37	14	59970692	59970692	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:59970692C>T	uc001xei.3	+	7	1382	c.880C>T	c.(880-882)CTT>TTT	p.L294F	JKAMP_uc001xef.3_Missense_Mutation_p.L280F|JKAMP_uc001xeh.3_Missense_Mutation_p.L274F|JKAMP_uc001xeg.3_Missense_Mutation_p.L288F|JKAMP_uc010try.1_Missense_Mutation_p.L217F|JKAMP_uc001xej.3_Missense_Mutation_p.L217F	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	295	Helical; (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						AGATTTGCCCCTTTTGGCTTT	0.418													36	78					0	0	1	0	0
RTN1	6252	broad.mit.edu	37	14	60063501	60063501	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:60063501G>A	uc001xen.1	-	9	2502	c.2293C>T	c.(2293-2295)CAG>TAG	p.Q765*	RTN1_uc001xem.1_Nonsense_Mutation_p.Q345*|RTN1_uc001xek.1_Nonsense_Mutation_p.Q197*|RTN1_uc001xel.1_RNA|RTN1_uc010apl.1_Nonsense_Mutation_p.Q182*	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	765	Reticulon.				neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		ATTTTAGCCTGAATCCTAAAA	0.398													32	83					0	0	1	0	0
RTN1	6252	broad.mit.edu	37	14	60069930	60069930	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:60069930C>T	uc001xen.1	-	7	2438	c.2229G>A	c.(2227-2229)CAG>CAA	p.Q743Q	RTN1_uc001xem.1_Silent_p.Q323Q|RTN1_uc001xek.1_Silent_p.Q175Q|RTN1_uc001xel.1_RNA|RTN1_uc010apl.1_Silent_p.Q160Q	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	743	Reticulon.				neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		TAGAACTTACCTGGTGCTTAA	0.318													20	42					0	0	1	0	0
RTN1	6252	broad.mit.edu	37	14	60074101	60074101	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:60074101G>A	uc001xen.1	-	4	2084	c.1875C>T	c.(1873-1875)GCC>GCT	p.A625A	RTN1_uc001xem.1_Silent_p.A205A|RTN1_uc001xek.1_Silent_p.A57A|RTN1_uc001xel.1_RNA|RTN1_uc010apl.1_Silent_p.A42A	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	625	Reticulon.				neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		GGGCCAGGTAGGCCACGACGC	0.557													5	53					0	0	1	0	0
RTN1	6252	broad.mit.edu	37	14	60193679	60193679	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:60193679G>A	uc001xen.1	-	3	1932	c.1723C>T	c.(1723-1725)CCT>TCT	p.P575S	RTN1_uc001xem.1_Missense_Mutation_p.P155S	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	575					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		GGGGCGCCAGGACCTAGAGGC	0.587													12	12					0	0	1	0	0
RTN1	6252	broad.mit.edu	37	14	60212997	60212997	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:60212997G>A	uc001xen.1	-	2	653	c.444C>T	c.(442-444)CCC>CCT	p.P148P		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	148					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		CTGGTAAGGAGGGGCCGGGTG	0.488													17	52					0	0	1	0	0
C14orf135	64430	broad.mit.edu	37	14	60591609	60591609	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:60591609C>T	uc001xer.3	+	8	2540	c.2018C>T	c.(2017-2019)TCT>TTT	p.S673F	C14orf135_uc001xeq.2_Missense_Mutation_p.S673F|C14orf135_uc010apm.2_RNA	NM_022495	NP_071940	Q63HM2	CN135_HUMAN	hepatitis C virus F protein-binding protein 2	907						integral to membrane				ovary(2)	2		Myeloproliferative disorder(585;0.163)		OV - Ovarian serous cystadenocarcinoma(108;0.127)		TGTTCACATTCTCACTTAGTA	0.423													11	167					0	0	1	0	0
SIX1	6495	broad.mit.edu	37	14	61115508	61115508	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:61115508T>C	uc001xfb.3	-	1	648	c.400A>G	c.(400-402)AAG>GAG	p.K134E		NM_005982	NP_005973	Q15475	SIX1_HUMAN	SIX homeobox 1	134	Homeobox.				branching involved in ureteric bud morphogenesis|embryonic cranial skeleton morphogenesis|epithelial cell differentiation|inner ear morphogenesis|mesonephric tubule formation|metanephric mesenchyme development|myoblast migration|negative regulation of neuron apoptosis|organ induction|pattern specification process|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of ureteric bud formation|protein localization to nucleus|regulation of branch elongation involved in ureteric bud branching|regulation of neuron differentiation|skeletal muscle tissue development|thymus development|thyroid gland development	nucleolus|transcription factor complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				OV - Ovarian serous cystadenocarcinoma(108;0.0201)		CCCCTCGACTTCTCCTTGAAG	0.662													31	55					0	0	1	0	0
SIX4	51804	broad.mit.edu	37	14	61187102	61187102	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:61187102G>A	uc001xfc.2	-	2	925	c.925C>T	c.(925-927)CCT>TCT	p.P309S	SIX4_uc010app.1_Missense_Mutation_p.P301S	NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	309						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		AGTGGGTGAGGAGATAAATCC	0.458													42	92					0	0	1	0	0
PRKCH	5583	broad.mit.edu	37	14	61924237	61924237	+	Missense_Mutation	SNP	G	A	A	rs61740172	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:61924237G>A	uc001xfn.2	+	9	1423	c.1118G>A	c.(1117-1119)AGA>AAA	p.R373K	PRKCH_uc010tsa.1_Missense_Mutation_p.R212K	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	373	Protein kinase.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		ATGCTTGCAAGAGTAAAAGAA	0.488													15	193					0	0	1	0	0
SYT16	83851	broad.mit.edu	37	14	62462974	62462974	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:62462974G>A	uc001xfu.1	+	1	434	c.237G>A	c.(235-237)GAG>GAA	p.E79E	SYT16_uc010tsd.1_Silent_p.E79E	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	79										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GGAGTCAAGAGGATGCAAATT	0.378													18	169					0	0	1	0	0
SYT16	83851	broad.mit.edu	37	14	62536530	62536530	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:62536530G>A	uc001xfu.1	+	2	930	c.733G>A	c.(733-735)GAA>AAA	p.E245K	SYT16_uc010tsd.1_Missense_Mutation_p.E245K	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	245										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		ATCTGCCTGCGAAGGTATCCT	0.483													12	48					0	0	1	0	0
SYT16	83851	broad.mit.edu	37	14	62542072	62542072	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:62542072C>T	uc001xfu.1	+	3	1153	c.956C>T	c.(955-957)TCC>TTC	p.S319F	SYT16_uc010tsd.1_Missense_Mutation_p.S319F	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	319										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		TTTGAAGATTCCTATGCCACT	0.502													38	130					0	0	1	0	0
SYT16	83851	broad.mit.edu	37	14	62547779	62547779	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:62547779G>A	uc001xfu.1	+	4	1418	c.1221G>A	c.(1219-1221)CAG>CAA	p.Q407Q	SYT16_uc010tsd.1_3'UTR|SYT16_uc010tse.1_5'UTR	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	407	C2 1.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		CGAACATACAGAGAGGGCCCA	0.592													8	26					0	0	1	0	0
SYT16	83851	broad.mit.edu	37	14	62547881	62547881	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:62547881G>A	uc001xfu.1	+	4	1520	c.1323G>A	c.(1321-1323)CGG>CGA	p.R441R	SYT16_uc010tsd.1_3'UTR|SYT16_uc010tse.1_5'UTR	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	441	C2 1.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		ACGCTGCCCGGAAGATGACCC	0.567													11	31					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63174955	63174955	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:63174955G>A	uc001xfx.2	-	11	2289	c.2238C>T	c.(2236-2238)TCC>TCT	p.S746S	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	746	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTCCGGTGATGGAGGCTCCAT	0.537													7	86					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63316460	63316460	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:63316460G>A	uc001xfx.2	-	8	1531	c.1480C>T	c.(1480-1482)CTC>TTC	p.L494F	KCNH5_uc001xfy.2_Missense_Mutation_p.L494F|KCNH5_uc001xfz.1_Missense_Mutation_p.L436F	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	494	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		ACCTGATAGAGTTTTAGGAAG	0.393													42	105					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63447955	63447955	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:63447955G>A	uc001xfx.2	-	6	628	c.577C>T	c.(577-579)CCT>TCT	p.P193S	KCNH5_uc001xfy.2_Missense_Mutation_p.P193S|KCNH5_uc001xfz.1_Missense_Mutation_p.P135S|KCNH5_uc001xga.2_Missense_Mutation_p.P135S	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	193	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTATACTGAGGAAGGATATCT	0.358													28	48					0	0	1	0	0
WDR89	112840	broad.mit.edu	37	14	64066610	64066611	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:64066610_64066611GG>AA	uc001xgh.2	-	3	296_297	c.50_51CC>TT	c.(49-51)TCC>TTT	p.S17F	WDR89_uc001xgi.2_Missense_Mutation_p.S17F	NM_001008726	NP_001008726	Q96FK6	WDR89_HUMAN	WD repeat domain 89	17											0				OV - Ovarian serous cystadenocarcinoma(108;0.00543)|all cancers(60;0.0181)|BRCA - Breast invasive adenocarcinoma(234;0.101)		TGGTTCCTAAGGAACATTTAAC	0.361													8	117					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64461881	64461881	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:64461881C>T	uc001xgm.2	+	23	3131	c.2901C>T	c.(2899-2901)ATC>ATT	p.I967I	SYNE2_uc001xgl.2_Silent_p.I967I	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	967	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AGAAACTTATCCGTAGAGGAA	0.294													11	46					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64608117	64608117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:64608117G>A	uc001xgm.2	+	81	15265	c.15035G>A	c.(15034-15036)GGG>GAG	p.G5012E	SYNE2_uc001xgl.2_Missense_Mutation_p.G5012E|SYNE2_uc010apy.2_Missense_Mutation_p.G1397E|SYNE2_uc001xgn.2_5'UTR|SYNE2_uc001xgo.2_RNA	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5012	Spectrin 1.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ATCAGTATCGGGAACCAGCTT	0.348													25	80					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64630177	64630177	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:64630177C>T	uc001xgm.2	+	89	16587	c.16357C>T	c.(16357-16359)CTG>TTG	p.L5453L	SYNE2_uc001xgl.2_Silent_p.L5453L|SYNE2_uc010apy.2_Silent_p.L1838L|SYNE2_uc001xgn.2_Silent_p.L415L|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_5'UTR	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5453	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTCCAGTGTCCTGGATCGACT	0.527													19	80					0	0	1	0	0
MTHFD1	4522	broad.mit.edu	37	14	64892501	64892501	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:64892501G>A	uc001xhb.2	+	10	1296	c.909G>A	c.(907-909)TGG>TGA	p.W303*	MTHFD1_uc010aqe.2_Nonsense_Mutation_p.W339*|MTHFD1_uc010aqf.2_Nonsense_Mutation_p.W359*	NM_005956	NP_005947	P11586	C1TC_HUMAN	methylenetetrahydrofolate dehydrogenase 1	303	Methylenetetrahydrofolate dehydrogenase and cyclohydrolase.				folic acid metabolic process|folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process	cytosol|mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|methylenetetrahydrofolate dehydrogenase|protein binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(108;8.7e-12)|all cancers(60;3.29e-11)|BRCA - Breast invasive adenocarcinoma(234;0.0488)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	CAGGAAAGTGGATGATTCAGT	0.338													37	80					0	0	1	0	0
HSPA2	3306	broad.mit.edu	37	14	65008433	65008433	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65008433C>T	uc001xhj.2	+	2	942	c.866C>T	c.(865-867)TCG>TTG	p.S289L	HSPA2_uc001xhk.3_Missense_Mutation_p.S289L	NM_021979	NP_068814	P54652	HSP72_HUMAN	heat shock 70kDa protein 2	289					response to unfolded protein|spermatid development	cell surface	ATP binding|unfolded protein binding			skin(1)	1				all cancers(60;0.00515)|OV - Ovarian serous cystadenocarcinoma(108;0.00584)|BRCA - Breast invasive adenocarcinoma(234;0.045)		GAGATCGACTCGCTCTACGAG	0.667													8	19					0	0	1	0	0
C14orf50	145376	broad.mit.edu	37	14	65053926	65053926	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65053926C>T	uc001xhl.1	+	10	822	c.726C>T	c.(724-726)TTC>TTT	p.F242F	C14orf50_uc001xhm.1_5'UTR	NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	242										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		TTTATACTTTCTGTACATATG	0.388													7	59					0	0	1	0	0
C14orf50	145376	broad.mit.edu	37	14	65055925	65055925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65055925C>T	uc001xhl.1	+	12	1234	c.1138C>T	c.(1138-1140)CTT>TTT	p.L380F	C14orf50_uc001xhm.1_Missense_Mutation_p.L110F	NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	380										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		GCTTCACCCCCTTGATCCAGA	0.428													21	77					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65220510	65220510	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65220510C>T	uc001xhr.2	-	32	6401	c.6347G>A	c.(6346-6348)GGG>GAG	p.G2116E	SPTB_uc001xhs.2_Missense_Mutation_p.G2116E|SPTB_uc010aqi.2_Missense_Mutation_p.G777E	NM_001024858	NP_001020029	P11277	SPTB1_HUMAN	spectrin beta isoform a	Error:Variant_position_missing_in_P11277_after_alignment					actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CTCTTCTTCCCCCTGCTCAGG	0.597													20	63					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65234028	65234028	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65234028C>T	uc001xht.2	-	30	6316	c.6262G>A	c.(6262-6264)GAG>AAG	p.E2088K	SPTB_uc001xhr.2_Missense_Mutation_p.E2088K|SPTB_uc001xhs.2_Missense_Mutation_p.E2088K|SPTB_uc001xhu.2_Missense_Mutation_p.E2088K|SPTB_uc010aqi.2_Missense_Mutation_p.E749K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	2088					actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CACCCAGTCTCCTCTGCGGGT	0.577													59	246					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65239505	65239505	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65239505G>A	uc001xht.2	-	25	5400	c.5346C>T	c.(5344-5346)CTC>CTT	p.L1782L	SPTB_uc001xhr.2_Silent_p.L1782L|SPTB_uc001xhs.2_Silent_p.L1782L|SPTB_uc001xhu.2_Silent_p.L1782L|SPTB_uc010aqi.2_Silent_p.L443L	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1782	Spectrin 15.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TGAGCTCCAGGAGGTCTGCCC	0.627													26	39					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65239996	65239996	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65239996G>A	uc001xht.2	-	24	5174	c.5120C>T	c.(5119-5121)TCA>TTA	p.S1707L	SPTB_uc001xhr.2_Missense_Mutation_p.S1707L|SPTB_uc001xhs.2_Missense_Mutation_p.S1707L|SPTB_uc001xhu.2_Missense_Mutation_p.S1707L|SPTB_uc010aqi.2_Missense_Mutation_p.S368L	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1707	Spectrin 14.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CTCCTTTTCTGAAATCCACTG	0.547													24	62					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65241864	65241864	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65241864G>A	uc001xht.2	-	22	4875	c.4821C>T	c.(4819-4821)GTC>GTT	p.V1607V	SPTB_uc001xhr.2_Silent_p.V1607V|SPTB_uc001xhs.2_Silent_p.V1607V|SPTB_uc001xhu.2_Silent_p.V1607V|SPTB_uc010aqi.2_Silent_p.V268V	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1607	Spectrin 13.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CATCGGAGATGACGTAGAGCT	0.622													15	136					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65245923	65245923	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65245923G>A	uc001xht.2	-	21	4569	c.4515C>T	c.(4513-4515)GAC>GAT	p.D1505D	SPTB_uc001xhr.2_Silent_p.D1505D|SPTB_uc001xhs.2_Silent_p.D1505D|SPTB_uc001xhu.2_Silent_p.D1505D|SPTB_uc010aqi.2_Silent_p.D166D	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1505	Spectrin 12.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TAGTGCCATAGTCGGCTGACT	0.537													11	32					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65252522	65252522	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65252522C>T	uc001xht.2	-	16	3763	c.3709G>A	c.(3709-3711)GAG>AAG	p.E1237K	SPTB_uc001xhr.2_Missense_Mutation_p.E1237K|SPTB_uc001xhs.2_Missense_Mutation_p.E1237K|SPTB_uc001xhu.2_Missense_Mutation_p.E1237K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1237	Spectrin 9.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		AGGTTTCCCTCAGCTACCAGC	0.562													16	286					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65253698	65253698	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65253698C>T	uc001xht.2	-	15	3039	c.2985G>A	c.(2983-2985)AGG>AGA	p.R995R	SPTB_uc001xhr.2_Silent_p.R995R|SPTB_uc001xhs.2_Silent_p.R995R|SPTB_uc001xhu.2_Silent_p.R995R	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	995	Spectrin 7.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CTGACAACTTCCTCTGGATGG	0.607													20	39					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65260194	65260194	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65260194C>T	uc001xht.2	-	13	2241	c.2187G>A	c.(2185-2187)AAG>AAA	p.K729K	SPTB_uc001xhr.2_Silent_p.K729K|SPTB_uc001xhs.2_Silent_p.K729K|SPTB_uc001xhu.2_Silent_p.K729K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	729	Spectrin 5.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CAGCCAGGTCCTTCAGCTGGT	0.592													14	40					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65260293	65260293	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65260293G>A	uc001xht.2	-	13	2142	c.2088C>T	c.(2086-2088)ATC>ATT	p.I696I	SPTB_uc001xhr.2_Silent_p.I696I|SPTB_uc001xhs.2_Silent_p.I696I|SPTB_uc001xhu.2_Silent_p.I696I	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	696	Spectrin 4.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCTCCTGGAAGATCTGCTCCA	0.587													19	25					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65262303	65262303	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65262303C>T	uc001xht.2	-	11	1450	c.1396G>A	c.(1396-1398)GCC>ACC	p.A466T	SPTB_uc001xhr.2_Missense_Mutation_p.A466T|SPTB_uc001xhs.2_Missense_Mutation_p.A466T|SPTB_uc001xhu.2_Missense_Mutation_p.A466T	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	466	Spectrin 2.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GTCTCGATGGCCTCATGCTTC	0.597													10	69					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65263284	65263284	+	Silent	SNP	G	A	A	rs150377252		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65263284G>A	uc001xht.2	-	10	1386	c.1332C>T	c.(1330-1332)CTC>CTT	p.L444L	SPTB_uc001xhr.2_Silent_p.L444L|SPTB_uc001xhs.2_Silent_p.L444L|SPTB_uc001xhu.2_Silent_p.L444L	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	444	Spectrin 2.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCTGGGCCACGAGGCGCTGGT	0.587													14	76					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65263330	65263330	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65263330C>T	uc001xht.2	-	10	1340	c.1286G>A	c.(1285-1287)CGG>CAG	p.R429Q	SPTB_uc001xhr.2_Missense_Mutation_p.R429Q|SPTB_uc001xhs.2_Missense_Mutation_p.R429Q|SPTB_uc001xhu.2_Missense_Mutation_p.R429Q	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	429	Spectrin 2.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TGCGGCCTTCCGGTCAAAGCG	0.587													21	56					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65263415	65263415	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65263415C>T	uc001xht.2	-	10	1255	c.1201G>A	c.(1201-1203)GAA>AAA	p.E401K	SPTB_uc001xhr.2_Missense_Mutation_p.E401K|SPTB_uc001xhs.2_Missense_Mutation_p.E401K|SPTB_uc001xhu.2_Missense_Mutation_p.E401K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	401	Spectrin 2.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TACTCAGCTTCCTCCAGGCTT	0.577													12	47					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65264471	65264471	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65264471C>T	uc001xht.2	-	9	1212	c.1158G>A	c.(1156-1158)GGG>GGA	p.G386G	SPTB_uc001xhr.2_Silent_p.G386G|SPTB_uc001xhs.2_Silent_p.G386G|SPTB_uc001xhu.2_Silent_p.G386G	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	386	Spectrin 2.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		ACACTAGTTTCCCATCGTGGG	0.443													38	147					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65264525	65264525	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:65264525G>A	uc001xht.2	-	9	1158	c.1104C>T	c.(1102-1104)ACC>ACT	p.T368T	SPTB_uc001xhr.2_Silent_p.T368T|SPTB_uc001xhs.2_Silent_p.T368T|SPTB_uc001xhu.2_Silent_p.T368T	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	368	Spectrin 1.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GGGACTGGATGGTAAAAAGTA	0.428													14	129					0	0	1	0	0
FUT8	2530	broad.mit.edu	37	14	66209075	66209075	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:66209075C>T	uc001xin.2	+	11	2872	c.1675C>T	c.(1675-1677)CGA>TGA	p.R559*	FUT8_uc001xio.2_Nonsense_Mutation_p.R559*|FUT8_uc010tsp.1_Nonsense_Mutation_p.R396*|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Nonsense_Mutation_p.R559*|FUT8_uc001xiq.2_Nonsense_Mutation_p.R430*|FUT8_uc001xis.2_Nonsense_Mutation_p.R153*	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	559	SH3.|Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		CTACAAAGTTCGAGAGAAGAT	0.448													21	59					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	66480006	66480006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:66480006C>T	uc001xit.2	-	1	627	c.502G>A	c.(502-504)GAG>AAG	p.E168K						SubName: Full=Nuclease sensitive element binding protein-1;																		TCCGATCCCTCGTTCTTTTCC	0.567													17	45					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	66480117	66480117	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:66480117C>T	uc001xit.2	-	1	516	c.391G>A	c.(391-393)GGC>AGC	p.G131S						SubName: Full=Nuclease sensitive element binding protein-1;																		TATTTACTGCCTTGAACTGGA	0.478													44	125					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	66480204	66480204	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:66480204C>T	uc001xit.2	-	1	429	c.304G>A	c.(304-306)GGA>AGA	p.G102R						SubName: Full=Nuclease sensitive element binding protein-1;																		ACAGTCTCTCCATCTCCTACA	0.468													32	131					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	66480298	66480298	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:66480298G>A	uc001xit.2	-	1	335	c.210C>T	c.(208-210)TTC>TTT	p.F70F						SubName: Full=Nuclease sensitive element binding protein-1;																		TCCTGTGGATGAAACCATATC	0.502													10	123					0	0	1	0	0
FAM71D	161142	broad.mit.edu	37	14	67664956	67664956	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:67664956G>A	uc001xja.1	+	3	332	c.78G>A	c.(76-78)CCG>CCA	p.P26P	FAM71D_uc010tsv.1_RNA|FAM71D_uc001xiz.2_RNA|FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	26										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		CCCATGATCCGAGAGATCTTC	0.428													55	116					0	0	1	0	0
FAM71D	161142	broad.mit.edu	37	14	67671359	67671359	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:67671359C>T	uc001xja.1	+	5	719	c.465C>T	c.(463-465)ACC>ACT	p.T155T	FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	155										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		AGCTCTGCACCTCTGCATATA	0.478													15	35					0	0	1	0	0
PLEK2	26499	broad.mit.edu	37	14	67864445	67864445	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:67864445G>A	uc001xjh.1	-	2	193	c.141C>T	c.(139-141)CCC>CCT	p.P47P		NM_016445	NP_057529	Q9NYT0	PLEK2_HUMAN	pleckstrin 2	47	PH 1.				actin cytoskeleton organization|intracellular signal transduction	cytoplasm|cytoskeleton|lamellipodium membrane				ovary(1)|pancreas(1)	2				all cancers(60;0.000728)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.00953)		TCCGGCCCTTGGGAGGGGTCA	0.602													8	25					0	0	1	0	0
TMEM229B	161145	broad.mit.edu	37	14	67940217	67940217	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:67940217G>A	uc001xjk.2	-	3	834	c.424C>T	c.(424-426)CTC>TTC	p.L142F	TMEM229B_uc001xjj.1_RNA	NM_182526	NP_872332	Q8NBD8	T229B_HUMAN	transmembrane protein 229B	142	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						TCGAAGCGGAGGCGGAGGGTG	0.657													16	41					0	0	1	0	0
TMEM229B	161145	broad.mit.edu	37	14	67940552	67940552	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:67940552G>A	uc001xjk.2	-	3	499	c.89C>T	c.(88-90)GCC>GTC	p.A30V	TMEM229B_uc001xjj.1_RNA	NM_182526	NP_872332	Q8NBD8	T229B_HUMAN	transmembrane protein 229B	30	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						GAACTCCCAGGCCGCTGTGAA	0.627													8	21					0	0	1	0	0
ARG2	384	broad.mit.edu	37	14	68117433	68117433	+	Silent	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:68117433G>C	uc001xjs.2	+	8	977	c.861G>C	c.(859-861)GGG>GGC	p.G287G		NM_001172	NP_001163	P78540	ARGI2_HUMAN	arginase 2 precursor	287					arginine metabolic process|nitric oxide biosynthetic process|urea cycle	mitochondrial matrix	arginase activity|metal ion binding				0				all cancers(60;0.000582)|OV - Ovarian serous cystadenocarcinoma(108;0.00392)|BRCA - Breast invasive adenocarcinoma(234;0.00928)	L-Arginine(DB00125)|L-Ornithine(DB00129)	TTCTTCCAGGGTTGCTATCAG	0.488													7	64					0	0	1	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68244848	68244848	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:68244848G>A	uc001xka.2	-	24	4931	c.4792C>T	c.(4792-4794)CTG>TTG	p.L1598L	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Silent_p.L1598L	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1598					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		CTTACTTGCAGAGCCTTGTCA	0.433													10	168					0	0	1	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68250149	68250149	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:68250149G>A	uc001xka.2	-	21	3859	c.3720C>T	c.(3718-3720)TCC>TCT	p.S1240S	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Silent_p.S1240S	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1240					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		GGCTTTGCCGGGATGAGCAAA	0.592													40	69					0	0	1	0	0
ZFP36L1	677	broad.mit.edu	37	14	69256436	69256436	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:69256436G>A	uc001xkh.1	-	2	961	c.831C>T	c.(829-831)TTC>TTT	p.F277F	ZFP36L1_uc001xki.1_Silent_p.F277F	NM_004926	NP_004917	Q07352	TISB_HUMAN	butyrate response factor 1	277					regulation of mRNA stability	cytosol|nucleus	DNA binding|mRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				all cancers(60;0.00203)|BRCA - Breast invasive adenocarcinoma(234;0.00205)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GCCGGAAGAGGAAGGTGGTCG	0.632											OREG0022753	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	95					0	0	1	0	0
ACTN1	87	broad.mit.edu	37	14	69352210	69352210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:69352210G>A	uc001xkl.2	-	12	1627	c.1317C>T	c.(1315-1317)GCC>GCT	p.A439A	ACTN1_uc001xkk.2_Silent_p.A35A|ACTN1_uc010ttb.1_Silent_p.A374A|ACTN1_uc001xkm.2_Silent_p.A439A|ACTN1_uc001xkn.2_Silent_p.A439A|ACTN1_uc010ttc.1_Silent_p.A24A|ACTN1_uc001xko.1_Silent_p.A374A|ACTN1_uc010ttd.1_Silent_p.A418A	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	439	Spectrin 2.|Interaction with DDN.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		CACTCTCGAAGGCCTCATGCT	0.617													12	40					0	0	1	0	0
ACTN1	87	broad.mit.edu	37	14	69376695	69376695	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:69376695G>A	uc001xkl.2	-	5	802	c.492C>T	c.(490-492)GTC>GTT	p.V164V	ACTN1_uc010ttb.1_Silent_p.V99V|ACTN1_uc001xkm.2_Silent_p.V164V|ACTN1_uc001xkn.2_Silent_p.V164V|ACTN1_uc001xko.1_Silent_p.V99V|ACTN1_uc010ttd.1_Silent_p.V143V	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	164	CH 2.|Actin-binding.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		TCTGGATGTTGACATTTTTGT	0.592													30	71					0	0	1	0	0
ACTN1	87	broad.mit.edu	37	14	69387775	69387775	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:69387775G>A	uc001xkl.2	-	3	598	c.288C>T	c.(286-288)GCC>GCT	p.A96A	ACTN1_uc010ttb.1_Silent_p.A31A|ACTN1_uc001xkm.2_Silent_p.A96A|ACTN1_uc001xkn.2_Silent_p.A96A|ACTN1_uc001xko.1_Silent_p.A31A|ACTN1_uc010ttd.1_Silent_p.A75A	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	96	CH 1.|Actin-binding.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		TGAAATCCAGGGCCTTGTTGA	0.547													30	100					0	0	1	0	0
DCAF5	8816	broad.mit.edu	37	14	69558597	69558597	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:69558597G>A	uc001xkp.2	-	6	892	c.673C>T	c.(673-675)CTG>TTG	p.L225L	DCAF5_uc001xkq.2_Silent_p.L224L|DCAF5_uc001xkr.3_Silent_p.L225L	NM_003861	NP_003852	Q96JK2	DCAF5_HUMAN	WD repeat domain 22	225	WD 4.					CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)	2						CCATAGCGCAGGAGAGAACTG	0.542													6	19					0	0	1	0	0
EXD2	55218	broad.mit.edu	37	14	69702850	69702850	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:69702850C>T	uc001xkt.2	+	8	1421	c.762C>T	c.(760-762)TAC>TAT	p.Y254Y	EXD2_uc001xku.2_Silent_p.Y124Y|EXD2_uc001xkv.2_Silent_p.Y379Y|EXD2_uc001xkw.2_Silent_p.Y254Y|EXD2_uc010aqt.2_Silent_p.Y379Y|EXD2_uc010tte.1_Silent_p.Y379Y|EXD2_uc001xky.2_Silent_p.Y254Y	NM_018199	NP_060669	Q9NVH0	EXD2_HUMAN	exonuclease 3'-5' domain containing 2	254					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						CTCAGTGGTACCTGGACAAAG	0.468													9	137					0	0	1	0	0
SFRS5	6430	broad.mit.edu	37	14	70238135	70238135	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70238135C>T	uc001xll.2	+	9	2227	c.776C>T	c.(775-777)TCC>TTC	p.S259F	SFRS5_uc001xlm.2_RNA|SFRS5_uc001xlo.2_Missense_Mutation_p.S259F|SFRS5_uc001xlp.2_Missense_Mutation_p.S259F|SFRS5_uc001xlq.2_Missense_Mutation_p.S256F	NM_006925	NP_008856	Q13243	SRSF5_HUMAN	splicing factor, arginine/serine-rich 5	259	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|protein binding|RNA binding				0				all cancers(60;0.00144)|BRCA - Breast invasive adenocarcinoma(234;0.0132)|OV - Ovarian serous cystadenocarcinoma(108;0.0154)		CGCCAGAGGTCCCGGTCCCGA	0.463													60	151					0	0	1	0	0
SMOC1	64093	broad.mit.edu	37	14	70418945	70418945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70418945G>A	uc001xls.1	+	2	443	c.190G>A	c.(190-192)GAG>AAG	p.E64K	SMOC1_uc001xlt.1_Missense_Mutation_p.E64K	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	64	Kazal-like.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		CAGGTCCTACGAGTCCATGTG	0.577													41	108					0	0	1	0	0
SMOC1	64093	broad.mit.edu	37	14	70420231	70420231	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70420231G>A	uc001xls.1	+	3	613	c.360G>A	c.(358-360)GAG>GAA	p.E120E	SMOC1_uc001xlt.1_Silent_p.E120E	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	120	Thyroglobulin type-1 1.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		AGTGTGGCGAGGATGGCTCCT	0.617													11	82					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634006	70634006	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70634006C>T	uc001xly.2	-	2	1888	c.1134G>A	c.(1132-1134)AAG>AAA	p.K378K	SLC8A3_uc001xlw.2_Silent_p.K378K|SLC8A3_uc001xlx.2_Silent_p.K378K|SLC8A3_uc001xlz.2_Silent_p.K378K|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	378	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TGGAGGCCTTCTTGGCTTGTT	0.517													54	106					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634267	70634267	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70634267C>T	uc001xly.2	-	2	1627	c.873G>A	c.(871-873)ATG>ATA	p.M291I	SLC8A3_uc001xlw.2_Missense_Mutation_p.M291I|SLC8A3_uc001xlx.2_Missense_Mutation_p.M291I|SLC8A3_uc001xlz.2_Missense_Mutation_p.M291I|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	291	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GGGAATTCATCATTTTCCCAT	0.478													28	45					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634419	70634419	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70634419A>G	uc001xly.2	-	2	1475	c.721T>C	c.(721-723)TTT>CTT	p.F241L	SLC8A3_uc001xlw.2_Missense_Mutation_p.F241L|SLC8A3_uc001xlx.2_Missense_Mutation_p.F241L|SLC8A3_uc001xlz.2_Missense_Mutation_p.F241L|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	241	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		CACACTGGAAAGAAGAAGAGA	0.483													18	42					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634749	70634749	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70634749C>T	uc001xly.2	-	2	1145	c.391G>A	c.(391-393)GAA>AAA	p.E131K	SLC8A3_uc001xlw.2_Missense_Mutation_p.E131K|SLC8A3_uc001xlx.2_Missense_Mutation_p.E131K|SLC8A3_uc001xlz.2_Missense_Mutation_p.E131K|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	131	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GAGACAGTTTCATTCCAGACC	0.478													29	44					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70635015	70635015	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70635015C>T	uc001xly.2	-	2	879	c.125G>A	c.(124-126)GGG>GAG	p.G42E	SLC8A3_uc001xlw.2_Missense_Mutation_p.G42E|SLC8A3_uc001xlx.2_Missense_Mutation_p.G42E|SLC8A3_uc001xlz.2_Missense_Mutation_p.G42E|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	42	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		ATTGTTCTGCCCTGTGCTTGG	0.567													13	42					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70635117	70635117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70635117G>A	uc001xly.2	-	2	777	c.23C>T	c.(22-24)CCT>CTT	p.P8L	SLC8A3_uc001xlw.2_Missense_Mutation_p.P8L|SLC8A3_uc001xlx.2_Missense_Mutation_p.P8L|SLC8A3_uc001xlz.2_Missense_Mutation_p.P8L|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	8					cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		AGAGGTGAGAGGCTGCAACCT	0.537													14	31					0	0	1	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713148	70713148	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70713148C>T	uc010ttg.1	-	1	1371	c.720G>A	c.(718-720)GGG>GGA	p.G240G		NR_003951				SubName: Full=ADAM21-like protein;												0						CCACACCATTCCCACAGCGCT	0.468													31	88					0	0	1	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713226	70713226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70713226C>T	uc010ttg.1	-	1	1293	c.642G>A	c.(640-642)ATG>ATA	p.M214I		NR_003951				SubName: Full=ADAM21-like protein;												0						AGGTGGTCTTCATAAAATCAG	0.413													60	145					0	0	1	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713515	70713515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70713515G>A	uc010ttg.1	-	1	1004	c.353C>T	c.(352-354)TCC>TTC	p.S118F		NR_003951				SubName: Full=ADAM21-like protein;												0						TTGTAGCTGGGAACGACTGAT	0.373													42	89					0	0	1	0	0
SYNJ2BP	55333	broad.mit.edu	37	14	70842434	70842434	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70842434G>A	uc001xmc.3	-	3	383	c.256C>T	c.(256-258)CGT>TGT	p.R86C	SYNJ2BP_uc010arc.2_RNA	NM_018373	NP_060843	P57105	SYJ2B_HUMAN	synaptojanin 2 binding protein	86	PDZ.|Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane					0				all cancers(60;0.00367)|BRCA - Breast invasive adenocarcinoma(234;0.00716)|OV - Ovarian serous cystadenocarcinoma(108;0.0377)		CCTGCATTACGAAAGAGGTCT	0.463													52	133					0	0	1	0	0
ADAM21	8747	broad.mit.edu	37	14	70924276	70924276	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70924276G>A	uc001xmd.2	+	1	60	c.60G>A	c.(58-60)GGG>GGA	p.G20G		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	20					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TCTGGCTTGGGGTATTTTTGT	0.537													47	106					0	0	1	0	0
ADAM21	8747	broad.mit.edu	37	14	70924606	70924606	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70924606G>A	uc001xmd.2	+	1	390	c.390G>A	c.(388-390)GGG>GGA	p.G130G		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	130					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		CTTGTTTTGGGGGCTTTCGAG	0.453													39	109					0	0	1	0	0
ADAM21	8747	broad.mit.edu	37	14	70926082	70926082	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70926082G>A	uc001xmd.2	+	1	1866	c.1866G>A	c.(1864-1866)AAG>AAA	p.K622K		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	622	Cys-rich.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GCATCCATAAGAAGTGTGTCA	0.453													12	90					0	0	1	0	0
ADAM21	8747	broad.mit.edu	37	14	70926127	70926127	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70926127G>A	uc001xmd.2	+	1	1911	c.1911G>A	c.(1909-1911)GAG>GAA	p.E637E		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	637	EGF-like.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GCCTTCCTGAGACCTGCAATA	0.507													26	65					0	0	1	0	0
ADAM21	8747	broad.mit.edu	37	14	70926258	70926258	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70926258G>A	uc001xmd.2	+	1	2042	c.2042G>A	c.(2041-2043)GGA>GAA	p.G681E		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	681	Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GCAAAGAGAGGAGTTTTTTTG	0.488													23	34					0	0	1	0	0
ADAM20	8748	broad.mit.edu	37	14	70991276	70991276	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70991276A>G	uc001xme.2	-	2	594	c.349T>C	c.(349-351)TTT>CTT	p.F117L		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	67					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		TGTCCCCCAAACCGCAGGCTA	0.522													29	77					0	0	1	0	0
ADAM20	8748	broad.mit.edu	37	14	70991597	70991597	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:70991597G>A	uc001xme.2	-	2	273	c.28C>T	c.(28-30)CCC>TCC	p.P10S		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	Error:Variant_position_missing_in_O43506_after_alignment					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		GGGATCTGGGGATCTGTGTCC	0.532													45	100					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71200008	71200008	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:71200008G>A	uc001xmm.2	-	11	2078	c.2078C>T	c.(2077-2079)TCA>TTA	p.S693L	MAP3K9_uc010ttk.1_Missense_Mutation_p.S421L|MAP3K9_uc001xmk.2_Missense_Mutation_p.S426L|MAP3K9_uc001xml.2_Missense_Mutation_p.S707L	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	693					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		ctggctgggtgaatgctgtag	0.308													10	24					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71267481	71267481	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:71267481G>A	uc001xmm.2	-	2	723	c.723C>T	c.(721-723)ATC>ATT	p.I241I	MAP3K9_uc001xml.2_Silent_p.I241I	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	241	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		AATTCACCAGGATGTCTGGGG	0.502													13	89					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71267675	71267675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:71267675G>A	uc001xmm.2	-	2	529	c.529C>T	c.(529-531)CCT>TCT	p.P177S	MAP3K9_uc001xml.2_Missense_Mutation_p.P177S	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	177	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		TCCTCATCAGGGTCGTGGCGA	0.537													15	142					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71267772	71267772	+	Silent	SNP	G	A	A	rs147891121	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:71267772G>A	uc001xmm.2	-	2	432	c.432C>T	c.(430-432)CTC>CTT	p.L144L	MAP3K9_uc001xml.2_Silent_p.L144L	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	144	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		CTTCCAAGGTGAGCTCCGCAA	0.438													24	63					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71444949	71444949	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:71444949C>T	uc001xmo.2	+	6	2341	c.1895C>T	c.(1894-1896)TCC>TTC	p.S632F	PCNX_uc001xmn.3_Missense_Mutation_p.S632F|PCNX_uc010are.1_Missense_Mutation_p.S632F	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	632	Ser-rich.					integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		ACTTCTCATTCCTGTCAGTCT	0.463													19	88					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71485759	71485759	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:71485759C>T	uc001xmo.2	+	12	3476	c.3030C>T	c.(3028-3030)GTC>GTT	p.V1010V	PCNX_uc010are.1_Silent_p.V899V|PCNX_uc010arf.1_5'UTR	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1010	Helical; (Potential).					integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TGTTAGCTGTCATCCTGGCTA	0.398													49	130					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71511997	71511997	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:71511997C>T	uc001xmo.2	+	20	4461	c.4015C>T	c.(4015-4017)CGA>TGA	p.R1339*	PCNX_uc010are.1_Nonsense_Mutation_p.R1228*|PCNX_uc010arf.1_Nonsense_Mutation_p.R199*	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1339						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		GTATGAAGTTCGAAGTAAGTA	0.343													24	59					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71575494	71575494	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:71575494C>T	uc001xmo.2	+	34	6921	c.6475C>T	c.(6475-6477)CGA>TGA	p.R2159*	PCNX_uc010are.1_Nonsense_Mutation_p.R2048*|PCNX_uc010arf.1_Nonsense_Mutation_p.R947*|PCNX_uc001xmp.2_Nonsense_Mutation_p.R243*	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	2159	Ser-rich.					integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		GATATCGCTTCGAAACTTGCC	0.562													10	65					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72085567	72085567	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:72085567C>T	uc001xms.2	+	3	1940	c.1592C>T	c.(1591-1593)TCT>TTT	p.S531F	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S531F|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S531F|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S531F|SIPA1L1_uc010ttm.1_Missense_Mutation_p.S6F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	531					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GAAAATGGATCTCCGTACAAC	0.403													28	79					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72152307	72152307	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:72152307C>T	uc001xms.2	+	10	3681	c.3333C>T	c.(3331-3333)ATC>ATT	p.I1111I	SIPA1L1_uc001xmt.2_Silent_p.I1111I|SIPA1L1_uc001xmu.2_Silent_p.I1111I|SIPA1L1_uc001xmv.2_Silent_p.I1111I|SIPA1L1_uc010ttm.1_Silent_p.I586I	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1111					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CCGCCAACATCCCTCGAAGCA	0.557													18	47					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72169145	72169145	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:72169145C>T	uc001xms.2	+	12	3917	c.3569C>T	c.(3568-3570)ACC>ATC	p.T1190I	SIPA1L1_uc001xmt.2_Missense_Mutation_p.T1190I|SIPA1L1_uc001xmu.2_Missense_Mutation_p.T1190I|SIPA1L1_uc001xmv.2_Missense_Mutation_p.T1190I|SIPA1L1_uc010ttm.1_Missense_Mutation_p.T665I|SIPA1L1_uc001xmw.2_5'UTR	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1190					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		AGGCAGAACACCCAGTCAGAT	0.498													28	49					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72176258	72176258	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:72176258G>A	uc001xms.2	+	15	4496	c.4148G>A	c.(4147-4149)GGC>GAC	p.G1383D	SIPA1L1_uc001xmt.2_Missense_Mutation_p.G1362D|SIPA1L1_uc001xmu.2_Missense_Mutation_p.G1362D|SIPA1L1_uc001xmv.2_Missense_Mutation_p.G1383D|SIPA1L1_uc010ttm.1_Missense_Mutation_p.G837D|SIPA1L1_uc001xmw.2_Missense_Mutation_p.G148D	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1383	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GAGAGCCACGGCCTGGACCGG	0.562													20	42					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72190375	72190375	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:72190375C>T	uc001xms.2	+	16	4631	c.4283C>T	c.(4282-4284)TCC>TTC	p.S1428F	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S1407F|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S1407F|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S1428F|SIPA1L1_uc010ttm.1_Missense_Mutation_p.S882F|SIPA1L1_uc001xmw.2_Missense_Mutation_p.S193F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1428	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ACCATGAGCTCCCGACACTCT	0.522													27	78					0	0	1	0	0
RGS6	9628	broad.mit.edu	37	14	72431580	72431580	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:72431580C>T	uc001xna.3	+	2	595	c.72C>T	c.(70-72)ATC>ATT	p.I24I	RGS6_uc010ttn.1_Silent_p.I24I|RGS6_uc001xmx.3_Silent_p.I24I|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Silent_p.I24I	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	24					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CAAACATGATCGTTTACTGCA	0.502													23	64					0	0	1	0	0
RGS6	9628	broad.mit.edu	37	14	72926360	72926360	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:72926360G>A	uc001xna.3	+	6	886	c.363G>A	c.(361-363)TCG>TCA	p.S121S	RGS6_uc010ttn.1_Silent_p.S121S|RGS6_uc001xmx.3_Silent_p.S121S|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Silent_p.S121S|RGS6_uc010ttp.1_Silent_p.S52S|RGS6_uc001xmz.1_5'UTR|RGS6_uc010arg.2_RNA	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	121					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		TCTGGCCTTCGAACTGCTGGG	0.572													19	68					0	0	1	0	0
RGS6	9628	broad.mit.edu	37	14	72941367	72941367	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:72941367G>A	uc001xna.3	+	10	1176	c.653G>A	c.(652-654)CGA>CAA	p.R218Q	RGS6_uc010ttn.1_Missense_Mutation_p.R218Q|RGS6_uc001xmx.3_Missense_Mutation_p.R218Q|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.R218Q|RGS6_uc010ttp.1_Missense_Mutation_p.R149Q|RGS6_uc001xmz.1_Missense_Mutation_p.R79Q	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	218					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		ATGGATATCCGAAAATGTCGA	0.363													26	51					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	73079283	73079283	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:73079283G>A	uc010arh.1	-	1		c.521C>T								Homo sapiens cDNA FLJ14079 fis, clone HEMBB1002134, weakly similar to ZINC-FINGER PROTEIN NEURO-D4.																		ACGGCAGAGGGAAGGGAGGAA	0.517													43	123					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	73079314	73079314	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:73079314G>A	uc010arh.1	-	1		c.490C>T								Homo sapiens cDNA FLJ14079 fis, clone HEMBB1002134, weakly similar to ZINC-FINGER PROTEIN NEURO-D4.																		GAAGGGAGAGGGCAGGAGGAG	0.532													35	69					0	0	1	0	0
DPF3	8110	broad.mit.edu	37	14	73159785	73159785	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:73159785C>T	uc001xnc.2	-	7	754	c.741G>A	c.(739-741)AGG>AGA	p.R247R	DPF3_uc001xnd.1_RNA|DPF3_uc001xnf.2_RNA|DPF3_uc010ari.1_Silent_p.R247R|DPF3_uc010ttq.1_Silent_p.R257R	NM_012074	NP_036206	Q92784	DPF3_HUMAN	D4, zinc and double PHD fingers, family 3	247					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex	nucleic acid binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00649)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		GGCACTCACGCCTGTGGTTCT	0.552													26	236					0	0	1	0	0
ZFYVE1	53349	broad.mit.edu	37	14	73490866	73490866	+	Silent	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:73490866A>C	uc001xnm.2	-	2	991	c.351T>G	c.(349-351)CCT>CCG	p.P117P	ZFYVE1_uc010arj.2_Silent_p.P117P	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	117						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		ACACAGTAACAGGGTGTCTCC	0.483													94	236					0	0	1	0	0
PAPLN	89932	broad.mit.edu	37	14	73721613	73721613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:73721613G>A	uc010ttx.1	+	13	1677	c.1514G>A	c.(1513-1515)CGG>CAG	p.R505Q	PAPLN_uc001xnw.3_Missense_Mutation_p.R478Q|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.R505Q	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	505	TSP type-1 5.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		TCGGGCACTCGGAGGCGACAG	0.657													11	46					0	0	1	0	0
PAPLN	89932	broad.mit.edu	37	14	73731423	73731423	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:73731423G>A	uc010ttx.1	+	21	3277	c.3114G>A	c.(3112-3114)CAG>CAA	p.Q1038Q	PAPLN_uc001xnw.3_Silent_p.Q1011Q|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Silent_p.Q1022Q|PAPLN_uc010arm.2_Silent_p.Q237Q|PAPLN_uc010arn.2_Silent_p.Q238Q	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	1038	Ig-like C2-type 2.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		CACACCCACAGCCTGCAAACA	0.657													49	113					0	0	1	0	0
PAPLN	89932	broad.mit.edu	37	14	73735384	73735384	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:73735384G>A	uc010ttx.1	+	25	3783	c.3620G>A	c.(3619-3621)GGG>GAG	p.G1207E	PAPLN_uc001xnw.3_Missense_Mutation_p.G1180E|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_Intron|PAPLN_uc010tty.1_Missense_Mutation_p.G1191E|PAPLN_uc010arm.2_Missense_Mutation_p.G406E|PAPLN_uc010arn.2_Intron	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	1207	Ig-like C2-type 3.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		GCCTACCAGGGGAGCCAGGCA	0.587													14	31					0	0	1	0	0
LIN52	91750	broad.mit.edu	37	14	74562682	74562682	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74562682C>T	uc001xpp.2	+	3	148	c.138C>T	c.(136-138)TTC>TTT	p.F46F	LIN52_uc010asb.2_RNA	NM_001024674	NP_001019845	Q52LA3	LIN52_HUMAN	lin-52 homolog	46										breast(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00471)		CAGCTTCCTTCAAAAGTGTAA	0.239													11	27					0	0	1	0	0
VSX2	338917	broad.mit.edu	37	14	74711967	74711968	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74711967_74711968GG>AA	uc001xpq.2	+	3	645_646	c.555_556GG>AA	c.(553-558)ACGGAG>ACAAAG	p.E186K		NM_182894	NP_878314	P58304	VSX2_HUMAN	visual system homeobox 2	186	Homeobox.				multicellular organismal development|response to stimulus|visual perception	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00154)		CCATGAAAACGGAGCTGCCGGA	0.579													15	55					0	0	1	0	0
VSX2	338917	broad.mit.edu	37	14	74726416	74726416	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74726416C>T	uc001xpq.2	+	4	781	c.691C>T	c.(691-693)CCC>TCC	p.P231S		NM_182894	NP_878314	P58304	VSX2_HUMAN	visual system homeobox 2	231	CVC.				multicellular organismal development|response to stimulus|visual perception	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00154)		GCACTCCATCCCCCTGCCCGA	0.647													21	62					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74823635	74823635	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74823635G>A	uc001xpw.3	+	2	340	c.149G>A	c.(148-150)GGC>GAC	p.G50D		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	50					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		CGGGAGGGAGGCCCTGGCCTC	0.637													10	100					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74824431	74824431	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74824431C>T	uc001xpw.3	+	2	1136	c.945C>T	c.(943-945)TCC>TCT	p.S315S		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	315					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		CCCGCTTCTCCGCCAAGCACT	0.632													25	75					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74824584	74824584	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74824584G>A	uc001xpw.3	+	2	1289	c.1098G>A	c.(1096-1098)AGG>AGA	p.R366R		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	366					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TGCCCCCCAGGGAGGTGCTGG	0.652													20	35					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74825080	74825080	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74825080C>T	uc001xpw.3	+	2	1785	c.1594C>T	c.(1594-1596)CGC>TGC	p.R532C		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	532					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		CTTCCGCCTCCGCTACCCCAG	0.647													52	148					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74825147	74825147	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74825147G>A	uc001xpw.3	+	2	1852	c.1661G>A	c.(1660-1662)GGC>GAC	p.G554D		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	554					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TGGCCCAGAGGCCTGTCCAAA	0.627													37	100					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74825433	74825433	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74825433G>A	uc001xpw.3	+	2	2138	c.1947G>A	c.(1945-1947)ACG>ACA	p.T649T		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	649					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TCGCTACCACGAAGTTCAAGG	0.612													22	51					0	0	1	0	0
TMEM90A	646658	broad.mit.edu	37	14	74874255	74874255	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74874255G>A	uc001xpx.2	-	4	948	c.700C>T	c.(700-702)CAG>TAG	p.Q234*		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	234					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		TGACCGTTCTGGGACATGTAA	0.642													30	77					0	0	1	0	0
TMEM90A	646658	broad.mit.edu	37	14	74876271	74876271	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74876271G>A	uc001xpx.2	-	2	425	c.177C>T	c.(175-177)TCC>TCT	p.S59S		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	59					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		CCAGCTGCAGGGACCCTGGGT	0.672													8	28					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	74973960	74973960	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74973960C>T	uc001xqa.2	-	26	4216	c.3829G>A	c.(3829-3831)GAA>AAA	p.E1277K		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1277	EGF-like 14; calcium-binding (Potential).|Cys-rich.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGGCTGTTTTCACACTTCCAG	0.592													27	87					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	74975996	74975996	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74975996G>A	uc001xqa.2	-	22	3735	c.3348C>T	c.(3346-3348)TCC>TCT	p.S1116S		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1116	EGF-like 10; calcium-binding (Potential).|Cys-rich.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		AGTCCTTGCAGGAGAAGGAGC	0.642													31	100					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	74976528	74976528	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74976528G>A	uc001xqa.2	-	21	3573	c.3186C>T	c.(3184-3186)CCC>CCT	p.P1062P		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1062	EGF-like 9; calcium-binding (Potential).|Cys-rich.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		AGAGGCCTGTGGGGCATGAGG	0.592													12	145					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	74978059	74978059	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:74978059C>T	uc001xqa.2	-	19	3304	c.2917G>A	c.(2917-2919)GAA>AAA	p.E973K		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	973	EGF-like 7; calcium-binding (Potential).|Cys-rich.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		TGACGGCATTCGTTGATATCT	0.572													33	89					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	75017841	75017841	+	Missense_Mutation	SNP	G	A	A	rs147534770		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75017841G>A	uc001xqa.2	-	7	1999	c.1612C>T	c.(1612-1614)CGG>TGG	p.R538W		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	538					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGCAGTGGCCGAGGGGGCTCT	0.667													15	51					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	75019754	75019754	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75019754T>A	uc001xqa.2	-	5	1420	c.1033A>T	c.(1033-1035)ACG>TCG	p.T345S		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	345					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		ATTTTCTCCGTGAGGTTCAGC	0.582													6	30					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	75022211	75022211	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75022211G>A	uc001xqa.2	-	4	1403	c.1016C>T	c.(1015-1017)CCC>CTC	p.P339L		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	339					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CTTACCCCAGGGGGATGAGGG	0.622													21	128					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	75022292	75022292	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75022292G>A	uc001xqa.2	-	4	1322	c.935C>T	c.(934-936)TCC>TTC	p.S312F		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	312					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CAGGGCGTTGGAAGAGAGCTG	0.657													13	78					0	0	1	0	0
KIAA0317	9870	broad.mit.edu	37	14	75136681	75136681	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75136681G>A	uc001xqb.2	-	14	2262	c.1757C>T	c.(1756-1758)GCC>GTC	p.A586V	KIAA0317_uc010tut.1_Missense_Mutation_p.A425V	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	586	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		TATGATTTGGGCCAGGAAAGA	0.542													32	87					0	0	1	0	0
KIAA0317	9870	broad.mit.edu	37	14	75136738	75136738	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75136738G>A	uc001xqb.2	-	14	2205	c.1700C>T	c.(1699-1701)TCT>TTT	p.S567F	KIAA0317_uc010tut.1_Missense_Mutation_p.S406F	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	567	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		TCCTCCTAGAGAGGACTCATA	0.542													9	113					0	0	1	0	0
KIAA0317	9870	broad.mit.edu	37	14	75150111	75150111	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75150111G>A	uc001xqb.2	-	5	874	c.369C>T	c.(367-369)TCC>TCT	p.S123S	KIAA0317_uc010tut.1_5'UTR|KIAA0317_uc001xqc.2_Silent_p.S123S|KIAA0317_uc001xqd.1_RNA	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	123	Filamin.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		TTACTACGTTGGAATTGGGCT	0.488													32	146					0	0	1	0	0
YLPM1	56252	broad.mit.edu	37	14	75230628	75230628	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75230628C>T	uc001xqj.3	+	1	560	c.436C>T	c.(436-438)CCC>TCC	p.P146S		NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	146	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		GCTGGAATCCCCCCCTGAATC	0.612													35	41					0	0	1	0	0
YLPM1	56252	broad.mit.edu	37	14	75248565	75248565	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75248565C>T	uc001xqj.3	+	4	1943	c.1819C>T	c.(1819-1821)CCA>TCA	p.P607S	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		AGTTCTTCCCCCACCATCTCT	0.597													71	129					0	0	1	0	0
YLPM1	56252	broad.mit.edu	37	14	75248676	75248676	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75248676C>T	uc001xqj.3	+	4	2054	c.1930C>T	c.(1930-1932)CCT>TCT	p.P644S	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	449					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		AGGGATACCTCCTCAGTTAAC	0.547													23	55					0	0	1	0	0
YLPM1	56252	broad.mit.edu	37	14	75265490	75265490	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75265490C>T	uc001xqj.3	+	5	3614	c.3490C>T	c.(3490-3492)CGT>TGT	p.R1164C	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	969	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		AGATTTTGGTCGTGATAGAGG	0.542													8	55					0	0	1	0	0
YLPM1	56252	broad.mit.edu	37	14	75266120	75266120	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75266120C>T	uc001xqj.3	+	5	4244	c.4120C>T	c.(4120-4122)CGA>TGA	p.R1374*	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1179	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		GTTGAGGATTCGAGAGTATCC	0.463													46	202					0	0	1	0	0
YLPM1	56252	broad.mit.edu	37	14	75276414	75276414	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75276414C>T	uc001xqj.3	+	7	4977	c.4853C>T	c.(4852-4854)CCC>CTC	p.P1618L	YLPM1_uc001xql.3_RNA|YLPM1_uc001xqm.1_Missense_Mutation_p.P101L	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1423					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		TCTTCCATTCCCCCTCCTGGC	0.483													11	55					0	0	1	0	0
PROX2	283571	broad.mit.edu	37	14	75329450	75329450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75329450G>A	uc001xqr.1	-	1	1088	c.1088C>T	c.(1087-1089)CCT>CTT	p.P363L	PROX2_uc001xqq.1_Intron	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	363					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		GTCCTGGGGAGGACTGCTACT	0.537													15	31					0	0	1	0	0
RPS6KL1	83694	broad.mit.edu	37	14	75388145	75388145	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75388145G>A	uc010tux.1	-	2	628	c.100C>T	c.(100-102)CGC>TGC	p.R34C	RPS6KL1_uc001xqw.2_Missense_Mutation_p.R34C|RPS6KL1_uc010asd.1_RNA|RPS6KL1_uc001xqy.1_Missense_Mutation_p.R34C	NM_031464	NP_113652	Q9Y6S9	RPKL1_HUMAN	ribosomal protein S6 kinase-like 1	34						ribosome	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00658)		ACCCTGTTGCGAATCTGCTCC	0.627													14	136					0	0	1	0	0
PGF	5228	broad.mit.edu	37	14	75416173	75416173	+	Missense_Mutation	SNP	C	T	T	rs143175863		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75416173C>T	uc010ase.1	-	3	548	c.202G>A	c.(202-204)GAG>AAG	p.E68K	PGF_uc001xqz.2_Missense_Mutation_p.E68K|PGF_uc001xra.2_Missense_Mutation_p.E67K|PGF_uc001xrb.2_Missense_Mutation_p.E68K|PGF_uc010asf.1_Silent_p.A53A	NM_002632	NP_002623	P49763	PLGF_HUMAN	placental growth factor, vascular endothelial	68					angiogenesis|cell differentiation|cell-cell signaling|positive regulation of cell division|positive regulation of cell proliferation|vascular endothelial growth factor receptor signaling pathway	extracellular region|membrane	growth factor activity|heparin binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00668)		TGCTCCACCTCGCTGGGGTAC	0.652													7	20					0	0	1	0	0
MLH3	27030	broad.mit.edu	37	14	75500155	75500155	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75500155G>A	uc001xrd.1	-	7	3898	c.3682C>T	c.(3682-3684)CAT>TAT	p.H1228Y	MLH3_uc001xre.1_Intron|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	1228					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		ATACGCTCATGGGCAGCGTGC	0.478								MMR					15	42					0	0	1	0	0
MLH3	27030	broad.mit.edu	37	14	75514208	75514208	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75514208G>A	uc001xrd.1	-	2	2367	c.2151C>T	c.(2149-2151)TTC>TTT	p.F717F	MLH3_uc001xre.1_Silent_p.F717F|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	717					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		TATACCAGGGGAAAGAGGGGG	0.378								MMR					39	99					0	0	1	0	0
NEK9	91754	broad.mit.edu	37	14	75563921	75563921	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75563921G>A	uc001xrl.2	-	17	2209	c.2055C>T	c.(2053-2055)ACC>ACT	p.T685T	NEK9_uc001xrk.2_Silent_p.T185T	NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	685	RCC1 6.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		TCTCTGTGGGGGTCATTGCCA	0.498													23	39					0	0	1	0	0
JDP2	122953	broad.mit.edu	37	14	75928233	75928233	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:75928233G>A	uc010asj.2	+	3	373	c.306G>A	c.(304-306)CGG>CGA	p.R102R	JDP2_uc010tvb.1_Silent_p.R102R|JDP2_uc010tvc.1_Silent_p.R102R|JDP2_uc001xrq.2_Silent_p.R113R	NM_001135047	NP_001128519	Q8WYK2	JDP2_HUMAN	Jun dimerization protein 2 isoform a	102	Leucine-zipper.					nucleus	sequence-specific DNA binding				0				BRCA - Breast invasive adenocarcinoma(234;0.0296)		TTCTGCAGCGGGTGAGCTGAC	0.582													3	12					0	0	1	0	0
BATF	10538	broad.mit.edu	37	14	76013005	76013005	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:76013005C>G	uc001xrr.2	+	3	611	c.369C>G	c.(367-369)TTC>TTG	p.F123L		NM_006399	NP_006390	Q16520	BATF_HUMAN	basic leucine zipper transcription factor,	123						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.028)		CCCCGCGCTTCCAGCCCTGAG	0.697													6	14					0	0	1	0	0
BATF	10538	broad.mit.edu	37	14	76013010	76013010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:76013010C>T	uc001xrr.2	+	3	616	c.374C>T	c.(373-375)CCC>CTC	p.P125L		NM_006399	NP_006390	Q16520	BATF_HUMAN	basic leucine zipper transcription factor,	125						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.028)		CGCTTCCAGCCCTGAGCTTCC	0.697													5	13					0	0	1	0	0
TTLL5	23093	broad.mit.edu	37	14	76149896	76149896	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:76149896C>T	uc001xrx.2	+	5	473	c.268C>T	c.(268-270)CAC>TAC	p.H90Y	TTLL5_uc001xrw.1_Missense_Mutation_p.H90Y|TTLL5_uc010ask.1_Missense_Mutation_p.H90Y|TTLL5_uc001xrv.2_Missense_Mutation_p.H90Y	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	90	TTL.				protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		CCCTCAGGTTCACCCAAGCAG	0.453													28	83					0	0	1	0	0
TTLL5	23093	broad.mit.edu	37	14	76232504	76232504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:76232504C>T	uc001xrx.2	+	20	2013	c.1808C>T	c.(1807-1809)TCC>TTC	p.S603F	TTLL5_uc010ask.1_Missense_Mutation_p.S617F|TTLL5_uc001xrz.2_Missense_Mutation_p.S178F|TTLL5_uc001xry.1_RNA	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	603					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		CAGGAGGCTTCCCAGGAGGAG	0.403													20	39					0	0	1	0	0
TTLL5	23093	broad.mit.edu	37	14	76368516	76368516	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:76368516C>T	uc001xrx.2	+	31	3977	c.3772C>T	c.(3772-3774)CTC>TTC	p.L1258F	TTLL5_uc001xsa.2_Missense_Mutation_p.L332F	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	1258					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		GCTGAATGGACTCCAGAGCAG	0.572													19	88					0	0	1	0	0
ESRRB	2103	broad.mit.edu	37	14	76928970	76928970	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:76928970C>T	uc001xsq.1	+	3	547	c.480C>T	c.(478-480)TTC>TTT	p.F160F	ESRRB_uc001xsr.2_Silent_p.F160F|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	160						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		CCTGCCGCTTCATGAAATGCC	0.582													52	113					0	0	1	0	0
ESRRB	2103	broad.mit.edu	37	14	76957805	76957805	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:76957805C>T	uc001xsq.1	+	6	870	c.803C>T	c.(802-804)TCC>TTC	p.S268F	ESRRB_uc001xsr.2_Missense_Mutation_p.S268F|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	268						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		TCAAGCCTCTCCCTGGGGGAC	0.647													3	10					0	0	1	0	0
ANGEL1	23357	broad.mit.edu	37	14	77257047	77257047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77257047G>A	uc001xsv.2	-	9	1872	c.1759C>T	c.(1759-1761)CGC>TGC	p.R587C	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	587										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		ACCTCTGGGCGGCCACGCTGG	0.512													4	42					0	0	1	0	0
ANGEL1	23357	broad.mit.edu	37	14	77270191	77270191	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77270191G>A	uc001xsv.2	-	6	1558	c.1445C>T	c.(1444-1446)CCC>CTC	p.P482L	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	482										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		CAGGGAGCTGGGCCACAGTGG	0.527													60	147					0	0	1	0	0
ANGEL1	23357	broad.mit.edu	37	14	77274304	77274304	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77274304G>A	uc001xsv.2	-	3	950	c.837C>T	c.(835-837)TTC>TTT	p.F279F	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	279										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		TGAGGTTCACGAAGCGATAGT	0.512													22	57					0	0	1	0	0
ZDHHC22	283576	broad.mit.edu	37	14	77600103	77600103	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77600103C>T	uc010asp.2	-	3	918	c.715G>A	c.(715-717)GGA>AGA	p.G239R		NM_174976	NP_777636	Q8N966	ZDH22_HUMAN	zinc finger, DHHC domain containing 22	239						integral to membrane	acyltransferase activity|zinc ion binding				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0277)		CACCTCTTTCCGAAGACCTCT	0.602													18	34					0	0	1	0	0
TMEM63C	57156	broad.mit.edu	37	14	77715711	77715711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77715711G>A	uc001xtf.2	+	21	2160	c.1948G>A	c.(1948-1950)GAG>AAG	p.E650K	TMEM63C_uc010asq.1_Missense_Mutation_p.E650K	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	650						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		CAAACTGAACGAGCAGATCCA	0.532													31	75					0	0	1	0	0
TMEM63C	57156	broad.mit.edu	37	14	77719701	77719701	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77719701C>T	uc001xtf.2	+	23	2414	c.2202C>T	c.(2200-2202)TCC>TCT	p.S734S	TMEM63C_uc010asq.1_Silent_p.S734S	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	734						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		GCAGCACCTCCTCCACGCCCA	0.617													5	16					0	0	1	0	0
POMT2	29954	broad.mit.edu	37	14	77750178	77750178	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77750178G>A	uc001xti.2	-	15	1816	c.1615C>T	c.(1615-1617)CCT>TCT	p.P539S	POMT2_uc001xth.1_Missense_Mutation_p.P237S	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	539					protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		AAGATCTCAGGAAAACTGGGC	0.473													34	84					0	0	1	0	0
POMT2	29954	broad.mit.edu	37	14	77778331	77778331	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77778331G>A	uc001xti.2	-	2	495	c.294C>T	c.(292-294)AAC>AAT	p.N98N	POMT2_uc010asr.2_Intron	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	98					protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		AAAATGTACGGTTGATATAGT	0.418													8	55					0	0	1	0	0
C14orf148	122945	broad.mit.edu	37	14	77861022	77861022	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77861022G>A	uc001xtr.2	-	6	1179	c.1032C>T	c.(1030-1032)TCC>TCT	p.S344S		NM_001113475	NP_001106946	Q6NXP6	CN148_HUMAN	hypothetical protein LOC122945 isoform 1	344					proline biosynthetic process		binding|pyrroline-5-carboxylate reductase activity				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0277)		CTTTGGTTAGGGAGATGCCAA	0.443													30	58					0	0	1	0	0
VIPAR	63894	broad.mit.edu	37	14	77910637	77910637	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77910637G>A	uc001xtt.1	-	9	890	c.552C>T	c.(550-552)CTC>CTT	p.L184L	VIPAR_uc001xtu.1_Silent_p.L184L|VIPAR_uc010tvj.1_Silent_p.L135L|VIPAR_uc001xtv.1_Silent_p.L184L	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	184					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						CCTCTTCTAGGAGTTGTAGTT	0.383													21	56					0	0	1	0	0
ISM2	145501	broad.mit.edu	37	14	77944600	77944601	+	Missense_Mutation	DNP	CC	TT	TT	rs140615876	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77944600_77944601CC>TT	uc001xtz.2	-	6	1256_1257	c.1182_1183GG>AA	c.(1180-1185)ACGGAC>ACAAAC	p.D395N	ISM2_uc001xua.2_Missense_Mutation_p.R279Q|ISM2_uc001xty.2_Missense_Mutation_p.D307N|ISM2_uc010tvl.1_Missense_Mutation_p.D314N	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	395						extracellular region				skin(1)	1						TCATGCATGTCCGTAGCATTGC	0.604													24	127					0	0	1	0	0
ISM2	145501	broad.mit.edu	37	14	77945045	77945045	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77945045C>T	uc001xtz.2	-	5	1061	c.987G>A	c.(985-987)CAG>CAA	p.Q329Q	ISM2_uc001xua.2_Missense_Mutation_p.R214K|ISM2_uc001xty.2_Silent_p.Q241Q|ISM2_uc010tvl.1_Silent_p.Q248Q	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	329	TSP type-1.					extracellular region				skin(1)	1						TCCACTCCTTCTGAGGCTCAT	0.448													24	47					0	0	1	0	0
ISM2	145501	broad.mit.edu	37	14	77948989	77948989	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77948989C>T	uc001xtz.2	-	4	723	c.649G>A	c.(649-651)GAC>AAC	p.D217N	ISM2_uc001xua.2_Intron|ISM2_uc001xty.2_Missense_Mutation_p.D129N|ISM2_uc010tvl.1_Missense_Mutation_p.D136N	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	217						extracellular region				skin(1)	1						GCCTGGGGGTCCTCCACCACC	0.627													47	101					0	0	1	0	0
ISM2	145501	broad.mit.edu	37	14	77950759	77950759	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77950759G>A	uc001xtz.2	-	3	608	c.534C>T	c.(532-534)CCC>CCT	p.P178P	ISM2_uc001xua.2_Silent_p.P178P|ISM2_uc001xty.2_Silent_p.P90P|ISM2_uc010tvl.1_Intron	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	178						extracellular region				skin(1)	1						CCTGGGTCCTGGGAGGCGTGG	0.592													10	105					0	0	1	0	0
ISM2	145501	broad.mit.edu	37	14	77951244	77951244	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:77951244G>A	uc001xtz.2	-	2	234	c.160C>T	c.(160-162)CCT>TCT	p.P54S	ISM2_uc001xua.2_Missense_Mutation_p.P54S|ISM2_uc001xty.2_5'UTR|ISM2_uc010tvl.1_Missense_Mutation_p.P54S	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	54						extracellular region				skin(1)	1						AGAGGCCTAGGATCTGGGGAG	0.607													7	73					0	0	1	0	0
SPTLC2	9517	broad.mit.edu	37	14	78021720	78021720	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:78021720G>A	uc001xub.2	-	8	1287	c.1099C>T	c.(1099-1101)CCC>TCC	p.P367S		NM_004863	NP_004854	O15270	SPTC2_HUMAN	serine palmitoyltransferase, long chain base	367						integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			upper_aerodigestive_tract(1)|ovary(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0346)	L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	ACATCCTCGGGATCCAGGCCA	0.512													77	139					0	0	1	0	0
ALKBH1	8846	broad.mit.edu	37	14	78142163	78142163	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:78142163G>A	uc001xuc.1	-	5	585	c.576C>T	c.(574-576)TTC>TTT	p.F192F	ALKBH1_uc001xud.1_RNA	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	192					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		GGTCAGAAGGGAAAGGTGTGT	0.418													18	60					0	0	1	0	0
ADCK1	57143	broad.mit.edu	37	14	78353570	78353570	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:78353570C>T	uc001xui.2	+	5	659	c.560C>T	c.(559-561)TCG>TTG	p.S187L	ADCK1_uc010tvo.1_Intron|ADCK1_uc001xuj.2_Missense_Mutation_p.S119L|ADCK1_uc001xuk.1_Missense_Mutation_p.S61L	NM_020421	NP_065154	Q86TW2	ADCK1_HUMAN	aarF domain containing kinase 1 isoform a	194	Protein kinase.					extracellular region	ATP binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)	3			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0376)		GCTCAGAGCTCGAAGGACATT	0.617													25	75					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	78709989	78709989	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:78709989G>A	uc001xum.1	+	2		c.1346G>A						Q9Y4C0	NRX3A_HUMAN	Homo sapiens mRNA for KIAA0743 protein, partial cds.						axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TGGAAACTCGGAGCCTCGGCT	0.577													20	69					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	79433634	79433634	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:79433634G>A	uc001xun.2	+	10	2233	c.1742G>A	c.(1741-1743)TGG>TAG	p.W581*	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Nonsense_Mutation_p.W706*	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	954	Extracellular (Potential).|Laminin G-like 5.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GACAACCAGTGGCACAATGTC	0.448													7	88					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	79434665	79434665	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:79434665G>A	uc001xun.2	+	11	2490	c.1999G>A	c.(1999-2001)GGA>AGA	p.G667R	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.G792R	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1040	Extracellular (Potential).|Laminin G-like 5.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TCATCGGAGCGGACAGATCGA	0.522													23	52					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	79434686	79434686	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:79434686G>A	uc001xun.2	+	11	2511	c.2020G>A	c.(2020-2022)GAA>AAA	p.E674K	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.E799K	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1047	Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GCGTGGCTGTGAAGGTACAAC	0.517													25	47					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	79454396	79454396	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:79454396T>G	uc001xun.2	+	12	2546	c.2055T>G	c.(2053-2055)TGT>TGG	p.C685W	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.C810W	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1058	EGF-like 3.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		AAGATTCATGTGCCAACCAGG	0.433													28	62					0	0	1	0	0
DIO2	1734	broad.mit.edu	37	14	80669428	80669428	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:80669428G>A	uc010tvq.1	-	4	828	c.426C>T	c.(424-426)GCC>GCT	p.A142A	DIO2_uc010tvp.1_Silent_p.A178A|DIO2_uc001xut.2_RNA|DIO2_uc010asx.2_3'UTR|DIO2_uc010tvr.1_Silent_p.A142A|DIO2_uc010asy.2_3'UTR	NM_000793	NP_000784	Q92813	IOD2_HUMAN	deiodinase, iodothyronine, type II isoform a	142					hormone biosynthetic process|selenocysteine incorporation|thyroid hormone generation	integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|ubiquitin protein ligase binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0281)		GTTTGCGGAAGGCTGGCAGCT	0.572											OREG0022848	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	21					0	0	1	0	0
C14orf145	145508	broad.mit.edu	37	14	80993272	80993272	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:80993272G>A	uc001xux.2	-	22	3184	c.3013C>T	c.(3013-3015)CGC>TGC	p.R1005C	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	1005						centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		GAATTTCTGCGAACCCTGTAT	0.348													18	76					0	0	1	0	0
C14orf145	145508	broad.mit.edu	37	14	81251698	81251698	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81251698G>A	uc001xux.2	-	14	1923	c.1752C>T	c.(1750-1752)TCC>TCT	p.S584S	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	584	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		TGGTATCCAGGGAATTCTTAA	0.438													34	106					0	0	1	0	0
C14orf145	145508	broad.mit.edu	37	14	81251861	81251861	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81251861G>A	uc001xux.2	-	14	1760	c.1589C>T	c.(1588-1590)ACC>ATC	p.T530I	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	530	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		ATACAGCTGGGTTTTCAATTC	0.368													5	15					0	0	1	0	0
C14orf145	145508	broad.mit.edu	37	14	81304583	81304583	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81304583G>A	uc001xux.2	-	10	1060	c.889C>T	c.(889-891)CAA>TAA	p.Q297*	C14orf145_uc010asz.1_5'Flank|C14orf145_uc001xuz.2_Nonsense_Mutation_p.Q297*|C14orf145_uc001xuy.1_Nonsense_Mutation_p.Q155*	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	297	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		CCTTCTGATTGATTCAATAAC	0.333													12	100					0	0	1	0	0
TSHR	7253	broad.mit.edu	37	14	81422098	81422098	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81422098C>T	uc001xvd.1	+	1	230	c.74C>T	c.(73-75)TCG>TTG	p.S25L	C14orf145_uc001xva.1_Intron|TSHR_uc001xvb.1_Missense_Mutation_p.S25L|TSHR_uc001xvc.2_Missense_Mutation_p.S25L|TSHR_uc010tvs.1_Missense_Mutation_p.S25L	NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	25	Extracellular (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	ATGGGGTGTTCGTCTCCACCC	0.607			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						42	99					0	0	1	0	0
TSHR	7253	broad.mit.edu	37	14	81610660	81610660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81610660G>A	uc001xvd.1	+	10	2414	c.2258G>A	c.(2257-2259)GGC>GAC	p.G753D		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	753	Cytoplasmic (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	AAGAAGCAAGGCCAAATCTCA	0.403			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						34	99					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81743479	81743479	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81743479C>T	uc010tvu.1	-	4	2377	c.2176G>A	c.(2176-2178)GAG>AAG	p.E726K	STON2_uc001xvk.1_Missense_Mutation_p.E726K|STON2_uc010tvt.1_Missense_Mutation_p.E523K	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	726	MHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		ATCACATTCTCACAGGGAACC	0.552													64	145					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81743738	81743739	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81743738_81743739CC>TT	uc010tvu.1	-	4	2117_2118	c.1916_1917GG>AA	c.(1915-1917)TGG>TAA	p.W639*	STON2_uc001xvk.1_Nonsense_Mutation_p.W639*|STON2_uc010tvt.1_Nonsense_Mutation_p.W436*	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	639	MHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		GGAGCTTGATCCACTTTGTGGT	0.53													16	43					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81744902	81744902	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81744902C>T	uc010tvu.1	-	4	954	c.753G>A	c.(751-753)CTG>CTA	p.L251L	STON2_uc001xvk.1_Silent_p.L251L|STON2_uc010tvt.1_Silent_p.L48L	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	251					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		TATTTGGCTTCAGAGGAGAGG	0.502													10	85					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81744996	81744996	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81744996G>A	uc010tvu.1	-	4	860	c.659C>T	c.(658-660)CCT>CTT	p.P220L	STON2_uc001xvk.1_Missense_Mutation_p.P220L|STON2_uc010tvt.1_Missense_Mutation_p.P17L	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	220					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		TGGAGGGGCAGGGTGCCCATT	0.532													27	49					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81864669	81864669	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81864669C>T	uc010tvu.1	-	1	259	c.58G>A	c.(58-60)GAA>AAA	p.E20K	STON2_uc001xvk.1_Missense_Mutation_p.E20K|STON2_uc010atc.1_Missense_Mutation_p.E20K	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	20					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		GGTGGCTCTTCATTGAAGGAG	0.483													18	48					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81864696	81864696	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:81864696G>A	uc010tvu.1	-	1	232	c.31C>T	c.(31-33)CAC>TAC	p.H11Y	STON2_uc001xvk.1_Missense_Mutation_p.H11Y|STON2_uc010atc.1_Missense_Mutation_p.H11Y	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	11					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		TCTGACTGGTGGGTGGCAATC	0.517													18	50					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86088013	86088013	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:86088013G>A	uc001xvr.2	+	2	922	c.155G>A	c.(154-156)CGA>CAA	p.R52Q	FLRT2_uc010atd.2_Missense_Mutation_p.R52Q	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	52	Extracellular (Potential).|LRRNT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TGTAATGAGCGAAGCTTGACC	0.517													45	103					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86088044	86088044	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:86088044G>A	uc001xvr.2	+	2	953	c.186G>A	c.(184-186)CCG>CCA	p.P62P	FLRT2_uc010atd.2_Silent_p.P62P	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	62	Extracellular (Potential).|LRRNT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TTGGGATCCCGGAGGGCGTAA	0.517													23	122					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86088099	86088099	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:86088099C>T	uc001xvr.2	+	2	1008	c.241C>T	c.(241-243)CCT>TCT	p.P81S	FLRT2_uc010atd.2_Missense_Mutation_p.P81S	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	81	Extracellular (Potential).|LRR 1.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TGCTGGATTTCCTGCAGAACT	0.488													29	84					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86089439	86089439	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:86089439C>T	uc001xvr.2	+	2	2348	c.1581C>T	c.(1579-1581)TCC>TCT	p.S527S	FLRT2_uc010atd.2_Silent_p.S527S	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	527	Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		ACACAGCGTCCAGCCATGAGC	0.587													50	129					0	0	1	0	0
GALC	2581	broad.mit.edu	37	14	88414169	88414169	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:88414169G>A	uc001xvt.2	-	13	1791	c.1392C>T	c.(1390-1392)TTC>TTT	p.F464F	GALC_uc010tvw.1_RNA|GALC_uc010tvx.1_Silent_p.F438F|GALC_uc010tvy.1_Silent_p.F441F|GALC_uc010tvz.1_Silent_p.F408F	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	464					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						TGGTGAGTGTGAACAGCTCAT	0.488													23	73					0	0	1	0	0
GALC	2581	broad.mit.edu	37	14	88429746	88429746	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:88429746G>A	uc001xvt.2	-	10	1542	c.1143C>T	c.(1141-1143)ACC>ACT	p.T381T	GALC_uc010tvw.1_RNA|GALC_uc010tvx.1_Silent_p.T355T|GALC_uc010tvy.1_Silent_p.T358T|GALC_uc010tvz.1_Silent_p.T325T|GALC_uc001xvu.1_Silent_p.T381T	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	381					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						CAATGATGATGGTGAGGTTCC	0.348													32	101					0	0	1	0	0
GPR65	8477	broad.mit.edu	37	14	88477323	88477323	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:88477323G>A	uc001xvv.2	+	2	662	c.132G>A	c.(130-132)AAG>AAA	p.K44K		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	44	Cytoplasmic (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						TGCAAGCAAAGAAGGAAAGTG	0.368													11	123					0	0	1	0	0
GPR65	8477	broad.mit.edu	37	14	88477672	88477672	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:88477672G>A	uc001xvv.2	+	2	1011	c.481G>A	c.(481-483)GAT>AAT	p.D161N		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	161	Extracellular (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						TGAATATTGCGATGCCGAAAA	0.393													42	146					0	0	1	0	0
GPR65	8477	broad.mit.edu	37	14	88477849	88477849	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:88477849G>A	uc001xvv.2	+	2	1188	c.658G>A	c.(658-660)GAA>AAA	p.E220K		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	220	Cytoplasmic (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						GGAAAACAAGGAAAAGAAGAG	0.428													16	35					0	0	1	0	0
GPR65	8477	broad.mit.edu	37	14	88478074	88478074	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:88478074G>A	uc001xvv.2	+	2	1413	c.883G>A	c.(883-885)GAA>AAA	p.E295K		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	295	Cytoplasmic (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						TTTTGTAACCGAAACAGGAAG	0.353													10	55					0	0	1	0	0
KCNK10	54207	broad.mit.edu	37	14	88658671	88658671	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:88658671G>A	uc001xwo.2	-	5	1207	c.750C>T	c.(748-750)ATC>ATT	p.I250I	KCNK10_uc001xwm.2_Silent_p.I255I|KCNK10_uc001xwn.2_Silent_p.I255I	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	250	Helical; (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						TGACAGCAGGGATCGTCACAA	0.502													33	112					0	0	1	0	0
FOXN3	1112	broad.mit.edu	37	14	89878700	89878700	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:89878700G>A	uc001xxo.3	-	2	258	c.121C>T	c.(121-123)CTC>TTC	p.L41F	FOXN3_uc001xxn.3_Missense_Mutation_p.L41F|FOXN3_uc010atk.2_Missense_Mutation_p.L41F|FOXN3_uc001xxp.2_Missense_Mutation_p.L41F	NM_001085471	NP_001078940	O00409	FOXN3_HUMAN	checkpoint suppressor 1 isoform 1	41					DNA damage checkpoint|embryo development|G2 phase of mitotic cell cycle|negative regulation of transcription, DNA-dependent|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein C-terminus binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(2)|ovary(1)	3						GAAAAGTCGAGGTCATCGTCT	0.522													54	101					0	0	1	0	0
C14orf143	90141	broad.mit.edu	37	14	90397920	90397920	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90397920G>A	uc001xxt.2	-	5	460	c.375C>T	c.(373-375)CCC>CCT	p.P125P	C14orf143_uc001xxs.2_Silent_p.P101P|C14orf143_uc001xxv.1_RNA|C14orf143_uc001xxw.1_Silent_p.P101P|C14orf143_uc001xxx.1_Silent_p.P125P	NM_145231	NP_660274	Q9BUY7	EFC11_HUMAN	hypothetical protein LOC90141	125	EF-hand 2.						calcium ion binding				0		all_cancers(154;0.136)		Epithelial(152;0.194)		CCGGTAATTTGGGAGCCACCT	0.333													54	116					0	0	1	0	0
C14orf143	90141	broad.mit.edu	37	14	90420996	90420996	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90420996G>A	uc001xxt.2	-	1	94	c.9C>T	c.(7-9)TTC>TTT	p.F3F	C14orf143_uc001xxs.2_5'Flank|C14orf143_uc001xxv.1_RNA|TDP1_uc010atm.2_5'Flank|TDP1_uc001xxy.2_5'Flank|TDP1_uc001xxz.2_5'Flank|TDP1_uc010atn.2_5'Flank|TDP1_uc001xya.2_5'Flank|TDP1_uc001xyb.2_5'Flank|C14orf143_uc001xxw.1_5'Flank|C14orf143_uc001xxx.1_Silent_p.F3F	NM_145231	NP_660274	Q9BUY7	EFC11_HUMAN	hypothetical protein LOC90141	3							calcium ion binding				0		all_cancers(154;0.136)		Epithelial(152;0.194)		TGGCCTCGGAGAAGAACATCG	0.652													3	21					0	0	1	0	0
TDP1	55775	broad.mit.edu	37	14	90450874	90450874	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90450874C>T	uc001xxy.2	+	9	1198	c.899C>T	c.(898-900)CCC>CTC	p.P300L	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Missense_Mutation_p.P300L|TDP1_uc010atn.2_Missense_Mutation_p.P300L|TDP1_uc001xya.2_Missense_Mutation_p.P61L|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Missense_Mutation_p.P300L|TDP1_uc001xyd.1_5'Flank	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	300					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		TGGTTGAGCCCCTTATACCCA	0.393								Repair_of_DNA-protein_crosslinks					50	211					0	0	1	0	0
TDP1	55775	broad.mit.edu	37	14	90485726	90485726	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90485726C>T	uc001xxy.2	+	15	1907	c.1608C>T	c.(1606-1608)TCC>TCT	p.S536S	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Silent_p.S536S|TDP1_uc010atn.2_Silent_p.S536S|TDP1_uc001xya.2_Silent_p.S297S|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Silent_p.S536S|TDP1_uc001xyd.1_Silent_p.S151S	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	536					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		TGATCCGCTCCTACGAGCTCG	0.522								Repair_of_DNA-protein_crosslinks					10	46					0	0	1	0	0
TDP1	55775	broad.mit.edu	37	14	90509483	90509483	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90509483C>T	uc001xxy.2	+	17	2122	c.1823C>T	c.(1822-1824)TCC>TTC	p.S608F	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Missense_Mutation_p.S608F|TDP1_uc010atn.2_3'UTR|TDP1_uc001xya.2_Missense_Mutation_p.S369F|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Missense_Mutation_p.P572S	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	608					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		TGGGTGCCCTCCTGAGAATCT	0.423								Repair_of_DNA-protein_crosslinks					17	49					0	0	1	0	0
KCNK13	56659	broad.mit.edu	37	14	90528592	90528592	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90528592G>A	uc001xye.1	+	1	485	c.43G>A	c.(43-45)GAG>AAG	p.E15K		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	15	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				CCACCTGAACGAGGACAACGC	0.756													3	20					0	0	1	0	0
KCNK13	56659	broad.mit.edu	37	14	90650927	90650927	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90650927C>T	uc001xye.1	+	2	1249	c.807C>T	c.(805-807)GTC>GTT	p.V269V		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	269	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				TCATGGGTGTCTGCTGCATCT	0.532													36	88					0	0	1	0	0
KCNK13	56659	broad.mit.edu	37	14	90651043	90651043	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90651043G>A	uc001xye.1	+	2	1365	c.923G>A	c.(922-924)CGA>CAA	p.R308Q		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	308	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				GGACTCTTGCGATCACGCAGG	0.572													38	77					0	0	1	0	0
KCNK13	56659	broad.mit.edu	37	14	90651116	90651116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90651116G>A	uc001xye.1	+	2	1438	c.996G>A	c.(994-996)GTG>GTA	p.V332V		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	332	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				CAGACGGGGTGGCAGAGAGTG	0.617													36	70					0	0	1	0	0
C14orf102	55051	broad.mit.edu	37	14	90770546	90770546	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90770546G>A	uc001xyi.1	-	5	769	c.738C>T	c.(736-738)CCC>CCT	p.P246P	C14orf102_uc010atp.1_5'UTR|C14orf102_uc001xyj.1_Silent_p.P15P	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	246	Potential.						protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		GCTCAGATGAGGGAGGTTCAG	0.448													43	119					0	0	1	0	0
C14orf102	55051	broad.mit.edu	37	14	90770548	90770548	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:90770548G>A	uc001xyi.1	-	5	767	c.736C>T	c.(736-738)CCC>TCC	p.P246S	C14orf102_uc010atp.1_5'UTR|C14orf102_uc001xyj.1_Missense_Mutation_p.P15S	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	246	Potential.						protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		TCAGATGAGGGAGGTTCAGTT	0.448													43	120					0	0	1	0	0
RPS6KA5	9252	broad.mit.edu	37	14	91444808	91444808	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91444808G>A	uc001xys.2	-	3	451	c.236C>T	c.(235-237)GCC>GTC	p.A79V	RPS6KA5_uc010twi.1_5'UTR|RPS6KA5_uc001xyt.2_Missense_Mutation_p.A79V|RPS6KA5_uc010att.1_RNA	NM_004755	NP_004746	O75582	KS6A5_HUMAN	ribosomal protein S6 kinase, polypeptide 5	79	Protein kinase 1.				axon guidance|epidermal growth factor receptor signaling pathway|histone phosphorylation|innate immune response|interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1		all_cancers(154;0.0148)|Melanoma(154;0.099)|all_epithelial(191;0.146)		Epithelial(152;0.182)|BRCA - Breast invasive adenocarcinoma(234;0.201)		AACTTTCATGGCATACAGCTT	0.363													21	52					0	0	1	0	0
C14orf159	80017	broad.mit.edu	37	14	91647573	91647573	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91647573G>A	uc001xzb.2	+	10	1527	c.759G>A	c.(757-759)ATG>ATA	p.M253I	C14orf159_uc010atv.1_RNA|C14orf159_uc001xyy.2_Missense_Mutation_p.M258I|C14orf159_uc001xyx.2_Missense_Mutation_p.M241I|C14orf159_uc001xyw.2_Missense_Mutation_p.M258I|C14orf159_uc001xzc.2_Missense_Mutation_p.M253I|C14orf159_uc001xza.2_Missense_Mutation_p.M258I|C14orf159_uc001xyv.2_Missense_Mutation_p.M258I|C14orf159_uc001xyz.2_Missense_Mutation_p.M129I|C14orf159_uc001xze.2_Missense_Mutation_p.M253I	NM_001102366	NP_001095836	Q7Z3D6	CN159_HUMAN	hypothetical protein LOC80017 isoform a	253						mitochondrion				central_nervous_system(2)|ovary(1)	3		all_cancers(154;0.0191)|all_epithelial(191;0.241)		Epithelial(152;0.141)|OV - Ovarian serous cystadenocarcinoma(161;0.207)		GCACAGTTATGACTGACCTGA	0.542													20	35					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91739116	91739116	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91739116C>T	uc010aty.2	-	30	6039	c.5940G>A	c.(5938-5940)AAG>AAA	p.K1980K	CCDC88C_uc001xzj.2_Silent_p.K504K|CCDC88C_uc001xzi.2_Silent_p.K430K	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1980					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GACCTGGGCTCTTGGCCGGAA	0.711													14	23					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91739130	91739130	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91739130C>T	uc010aty.2	-	30	6025	c.5926G>A	c.(5926-5928)GGG>AGG	p.G1976R	CCDC88C_uc001xzj.2_Missense_Mutation_p.G500R|CCDC88C_uc001xzi.2_Missense_Mutation_p.G426R	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1976					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCCGGAAGCCCCTCACTGCAG	0.711													5	25					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91744422	91744422	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91744422G>A	uc010aty.2	-	29	5001	c.4902C>T	c.(4900-4902)CCC>CCT	p.P1634P	CCDC88C_uc001xzj.2_Silent_p.P158P|CCDC88C_uc001xzi.2_Silent_p.P84P	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1634					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TCCGAGGCAAGGGGTACTCGT	0.701													7	12					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91755509	91755509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91755509G>A	uc010aty.2	-	25	4480	c.4381C>T	c.(4381-4383)CCC>TCC	p.P1461S		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1461					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CCCAGTGCGGGGGTGTCGGGG	0.697													29	54					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91770166	91770166	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91770166C>T	uc010aty.2	-	20	3613	c.3514G>A	c.(3514-3516)GAG>AAG	p.E1172K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1172	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CCCAGGTGCTCGTGGTCCTGC	0.632													14	35					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91779643	91779643	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91779643C>T	uc010aty.2	-	15	2616	c.2517G>A	c.(2515-2517)AAG>AAA	p.K839K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	839	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCTTGGCCTCCTTCTCCAGCA	0.627													31	94					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91779837	91779837	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91779837G>A	uc010aty.2	-	15	2422	c.2323C>T	c.(2323-2325)CTG>TTG	p.L775L		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	775	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CTGCTCTCCAGGCTCTGCTGC	0.662													12	21					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91780176	91780176	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91780176C>T	uc010aty.2	-	15	2083	c.1984G>A	c.(1984-1986)GAG>AAG	p.E662K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	662	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TCCAGGGCCTCGACTTTCTCG	0.632													5	22					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91805699	91805699	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:91805699G>A	uc010aty.2	-	8	831	c.732C>T	c.(730-732)CTC>CTT	p.L244L	CCDC88C_uc010twk.1_Silent_p.L208L	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	244					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CTTCGCTAGAGAGGCTGCTGG	0.657													7	27					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92102845	92102845	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92102845G>A	uc001xzs.1	-	17	1806	c.1666C>T	c.(1666-1668)CCT>TCT	p.P556S	CATSPERB_uc010aub.1_Missense_Mutation_p.P78S	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	556					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TCGTTCTCAGGTACATATGCA	0.413													15	76					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92102891	92102891	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92102891G>A	uc001xzs.1	-	17	1760	c.1620C>T	c.(1618-1620)GCC>GCT	p.A540A	CATSPERB_uc010aub.1_Silent_p.A62A	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	540					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane		p.A540G(1)		breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TGTGCTGTGGGGCAAGCGCAG	0.378													18	55					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92150276	92150276	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92150276C>T	uc001xzs.1	-	11	1016	c.876G>A	c.(874-876)GTG>GTA	p.V292V		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	292					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				GTTTTCCTTTCACATAGTCAA	0.259													31	86					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92191472	92191472	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92191472G>A	uc001xzs.1	-	3	260	c.120C>T	c.(118-120)TTC>TTT	p.F40F		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	40					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TCTCTTGAGGGAACCCTTTGT	0.313													14	34					0	0	1	0	0
TC2N	123036	broad.mit.edu	37	14	92251698	92251698	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92251698G>A	uc001xzu.3	-	11	1361	c.1170C>T	c.(1168-1170)TTC>TTT	p.F390F	TC2N_uc001xzt.3_Silent_p.F390F|TC2N_uc010auc.2_Silent_p.F326F|TC2N_uc001xzv.3_Silent_p.F390F	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	390	C2.					nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		CCACCTTCACGAAAAAACCTA	0.323													82	215					0	0	1	0	0
TC2N	123036	broad.mit.edu	37	14	92278668	92278668	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92278668C>T	uc001xzu.3	-	3	480	c.289G>A	c.(289-291)GAA>AAA	p.E97K	TC2N_uc001xzt.3_Missense_Mutation_p.E97K|TC2N_uc010auc.2_Missense_Mutation_p.E97K|TC2N_uc001xzv.3_Missense_Mutation_p.E97K	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	97						nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		TCAAGTTCTTCCAGATGTGAA	0.289													13	36					0	0	1	0	0
FBLN5	10516	broad.mit.edu	37	14	92347740	92347740	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92347740C>T	uc001xzx.3	-	9	1358	c.885G>A	c.(883-885)AGG>AGA	p.R295R	FBLN5_uc010aud.2_Silent_p.R300R|FBLN5_uc010aue.2_Silent_p.R336R	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	295	EGF-like 6; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				ACGTGTGGTTCCTGTGCTCAC	0.557													29	72					0	0	1	0	0
FBLN5	10516	broad.mit.edu	37	14	92353616	92353616	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92353616G>A	uc001xzx.3	-	7	1133	c.660C>T	c.(658-660)ACC>ACT	p.T220T	FBLN5_uc010aud.2_Silent_p.T225T|FBLN5_uc010aue.2_Silent_p.T261T	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	220	EGF-like 4; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				TGTTGACGCAGGTTTGCACGC	0.522													49	97					0	0	1	0	0
TRIP11	9321	broad.mit.edu	37	14	92470193	92470193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92470193G>A	uc001xzy.2	-	11	4915	c.4127C>T	c.(4126-4128)TCG>TTG	p.S1376L	TRIP11_uc010auf.1_Missense_Mutation_p.S1112L	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	1376	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		GGCAGCAATCGAATCAGACAA	0.378			T	PDGFRB	AML								49	105					0	0	1	0	0
TRIP11	9321	broad.mit.edu	37	14	92484090	92484090	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92484090G>A	uc001xzy.2	-	5	1381	c.593C>T	c.(592-594)TCC>TTC	p.S198F	TRIP11_uc010auf.1_5'Flank	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	198	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		TTGTGCTTTGGAAGTCTAGAT	0.284			T	PDGFRB	AML								10	46					0	0	1	0	0
TRIP11	9321	broad.mit.edu	37	14	92488054	92488054	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92488054G>A	uc001xzy.2	-	4	1222	c.434C>T	c.(433-435)TCA>TTA	p.S145L		NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	145	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		ATAAGCGAATGAAGATGATGC	0.458			T	PDGFRB	AML								21	41					0	0	1	0	0
SLC24A4	123041	broad.mit.edu	37	14	92905734	92905734	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92905734C>T	uc001yak.2	+	4	347	c.323C>T	c.(322-324)TCT>TTT	p.S108F	SLC24A4_uc001yai.2_Missense_Mutation_p.S61F|SLC24A4_uc010twm.1_Missense_Mutation_p.S125F|SLC24A4_uc001yaj.2_Missense_Mutation_p.S108F|SLC24A4_uc010auj.2_Missense_Mutation_p.S16F	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	125	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		TTTGTTCCGTCTCTAGAGAAG	0.527													31	133					0	0	1	0	0
SLC24A4	123041	broad.mit.edu	37	14	92915537	92915537	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:92915537C>T	uc001yak.2	+	10	830	c.806C>T	c.(805-807)CCT>CTT	p.P269L	SLC24A4_uc001yai.2_Missense_Mutation_p.P222L|SLC24A4_uc010twm.1_Intron|SLC24A4_uc001yaj.2_Intron|SLC24A4_uc010auj.2_Intron|SLC24A4_uc010twn.1_Missense_Mutation_p.P42L|uc001yal.1_RNA	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	286	Extracellular (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		TATGATGACCCTTCCGTGCCA	0.473													16	40					0	0	1	0	0
RIN3	79890	broad.mit.edu	37	14	93119327	93119327	+	Missense_Mutation	SNP	C	T	T	rs142007147		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:93119327C>T	uc001yap.2	+	6	2085	c.1933C>T	c.(1933-1935)CGC>TGC	p.R645C	RIN3_uc010auk.2_Missense_Mutation_p.R307C|RIN3_uc001yaq.2_Missense_Mutation_p.R570C|RIN3_uc001yar.1_Missense_Mutation_p.R307C|RIN3_uc001yas.1_Missense_Mutation_p.R307C	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	645	Interaction with RAB5B.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding	p.R645C(1)		lung(2)|ovary(1)	3		all_cancers(154;0.0701)				GCAGGAGATTCGCACCATGAT	0.622													15	37					0	0	1	0	0
RIN3	79890	broad.mit.edu	37	14	93125602	93125602	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:93125602C>T	uc001yap.2	+	7	2275	c.2123C>T	c.(2122-2124)TCG>TTG	p.S708L	RIN3_uc010auk.2_Missense_Mutation_p.S370L|RIN3_uc001yaq.2_Missense_Mutation_p.S633L|RIN3_uc001yar.1_Missense_Mutation_p.S370L|RIN3_uc001yas.1_Missense_Mutation_p.S370L	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	708	Interaction with RAB5B.|VPS9.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				AAGGATGGTTCGCTGCAGCAG	0.547													56	200					0	0	1	0	0
RIN3	79890	broad.mit.edu	37	14	93125795	93125795	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:93125795C>T	uc001yap.2	+	7	2468	c.2316C>T	c.(2314-2316)TCC>TCT	p.S772S	RIN3_uc010auk.2_Silent_p.S434S|RIN3_uc001yaq.2_Silent_p.S697S|RIN3_uc001yar.1_Silent_p.S434S|RIN3_uc001yas.1_Silent_p.S434S	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	772	VPS9.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				TCTACGACTCCATGGCCCTCG	0.572													28	95					0	0	1	0	0
RIN3	79890	broad.mit.edu	37	14	93142930	93142930	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:93142930C>T	uc001yap.2	+	8	2598	c.2446C>T	c.(2446-2448)CCC>TCC	p.P816S	RIN3_uc010auk.2_Missense_Mutation_p.P478S|RIN3_uc001yaq.2_Missense_Mutation_p.P741S|RIN3_uc001yas.1_Missense_Mutation_p.P478S	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	816	VPS9.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				GCTCATGGACCCCGCCCTGCA	0.617													12	52					0	0	1	0	0
LGMN	5641	broad.mit.edu	37	14	93179168	93179168	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:93179168G>A	uc001yav.2	-	9	918	c.592C>T	c.(592-594)CTG>TTG	p.L198L	LGMN_uc001yat.2_Silent_p.L198L|LGMN_uc001yau.2_Silent_p.L198L|LGMN_uc001yaw.2_Silent_p.L198L|LGMN_uc010aul.2_Silent_p.L79L|LGMN_uc001yax.2_Silent_p.L198L|LGMN_uc001yay.2_Silent_p.L198L	NM_001008530	NP_001008530	Q99538	LGMN_HUMAN	legumain preproprotein	198					hormone biosynthetic process|negative regulation of neuron apoptosis|vitamin D metabolic process	lysosome	cysteine-type endopeptidase activity|protein serine/threonine kinase activity			skin(1)	1		all_cancers(154;0.0706)		COAD - Colon adenocarcinoma(157;0.224)		TTATCCGGCAGGTGGTTCATC	0.592													6	30					0	0	1	0	0
LGMN	5641	broad.mit.edu	37	14	93185157	93185157	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:93185157G>A	uc001yav.2	-	4	497	c.171C>T	c.(169-171)CAC>CAT	p.H57H	LGMN_uc001yat.2_Silent_p.H57H|LGMN_uc001yau.2_Silent_p.H57H|LGMN_uc001yaw.2_Silent_p.H57H|LGMN_uc010aul.2_5'UTR|LGMN_uc001yax.2_Silent_p.H57H|LGMN_uc001yay.2_Silent_p.H57H	NM_001008530	NP_001008530	Q99538	LGMN_HUMAN	legumain preproprotein	57					hormone biosynthetic process|negative regulation of neuron apoptosis|vitamin D metabolic process	lysosome	cysteine-type endopeptidase activity|protein serine/threonine kinase activity			skin(1)	1		all_cancers(154;0.0706)		COAD - Colon adenocarcinoma(157;0.224)		TCCCATTGCGGTGAATGATCT	0.483													27	81					0	0	1	0	0
CHGA	1113	broad.mit.edu	37	14	93390581	93390581	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:93390581G>A	uc001ybc.3	+	2	344	c.84G>A	c.(82-84)GGG>GGA	p.G28G	CHGA_uc010aum.2_RNA|CHGA_uc001ybd.3_Silent_p.G28G	NM_001275	NP_001266	P10645	CMGA_HUMAN	chromogranin A precursor	28					regulation of blood pressure	extracellular region|stored secretory granule				skin(2)	2		all_cancers(154;0.0843)		Epithelial(152;0.102)|COAD - Colon adenocarcinoma(157;0.208)|all cancers(159;0.224)		TGAATAAAGGGGATACCGAGG	0.562													9	19					0	0	1	0	0
ITPK1	3705	broad.mit.edu	37	14	93408217	93408217	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:93408217G>A	uc001ybg.2	-	11	1223	c.934C>T	c.(934-936)CTC>TTC	p.L312F	ITPK1_uc001ybe.2_Intron|ITPK1_uc001ybf.2_Missense_Mutation_p.L193F|ITPK1_uc001ybh.2_Missense_Mutation_p.L312F	NM_014216	NP_055031	Q13572	ITPK1_HUMAN	inositol 1,3,4-triphosphate 5/6 kinase isoform	312	ATP-grasp.				blood coagulation|inositol trisphosphate metabolic process|signal transduction	cytosol	ATP binding|hydrolase activity|inositol tetrakisphosphate 1-kinase activity|inositol-1,3,4-trisphosphate 5/6-kinase activity|isomerase activity|ligase activity|magnesium ion binding				0		all_cancers(154;0.077)|all_epithelial(191;0.247)		Epithelial(152;0.124)|all cancers(159;0.169)		TGGTTCAGGAGGTCTGTGAAG	0.657													6	25					0	0	1	0	0
ITPK1	3705	broad.mit.edu	37	14	93483112	93483113	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:93483112_93483113GG>AA	uc001ybg.2	-	4	443_444	c.154_155CC>TT	c.(154-156)CCC>TTC	p.P52F	ITPK1_uc001ybe.2_Missense_Mutation_p.P52F|ITPK1_uc001ybf.2_5'UTR|ITPK1_uc001ybh.2_Missense_Mutation_p.P52F	NM_014216	NP_055031	Q13572	ITPK1_HUMAN	inositol 1,3,4-triphosphate 5/6 kinase isoform	52					blood coagulation|inositol trisphosphate metabolic process|signal transduction	cytosol	ATP binding|hydrolase activity|inositol tetrakisphosphate 1-kinase activity|inositol-1,3,4-trisphosphate 5/6-kinase activity|isomerase activity|ligase activity|magnesium ion binding				0		all_cancers(154;0.077)|all_epithelial(191;0.247)		Epithelial(152;0.124)|all cancers(159;0.169)		GACGTCCAGGGGGCCCTGCTCC	0.574													22	81					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94044314	94044314	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94044314G>A	uc001ybv.1	+	15	1890	c.1807G>A	c.(1807-1809)GGA>AGA	p.G603R	KIAA1409_uc001ybs.1_Missense_Mutation_p.G603R	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	780						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CAAGAATTTTGGACACCCAGG	0.423													57	122					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94069757	94069757	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94069757C>T	uc001ybv.1	+	23	3299	c.3216C>T	c.(3214-3216)TCC>TCT	p.S1072S	KIAA1409_uc001ybs.1_Silent_p.S1072S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1249						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CCCTGACCTCCAAAATTCGTT	0.478													10	45					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94083510	94083510	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94083510T>G	uc001ybv.1	+	26	3702	c.3619T>G	c.(3619-3621)TTA>GTA	p.L1207V	KIAA1409_uc001ybs.1_Missense_Mutation_p.L1185V	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1362						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CCTTCTCCCCTTAGTGGTTCA	0.433													26	122					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94083536	94083536	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94083536C>T	uc001ybv.1	+	26	3728	c.3645C>T	c.(3643-3645)TGC>TGT	p.C1215C	KIAA1409_uc001ybs.1_Silent_p.C1193C	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1370						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TCAAATACTGCTCTTGTCCTC	0.453													40	102					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94088494	94088494	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94088494C>T	uc001ybv.1	+	28	4533	c.4450C>T	c.(4450-4452)CCT>TCT	p.P1484S	KIAA1409_uc001ybs.1_Missense_Mutation_p.P1462S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1639						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GCCTCTTCCCCCTCTCAGAAT	0.517													35	113					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94088532	94088532	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94088532G>A	uc001ybv.1	+	28	4571	c.4488G>A	c.(4486-4488)ACG>ACA	p.T1496T	KIAA1409_uc001ybs.1_Silent_p.T1474T	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1651						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AAGAGGAGACGATGAACCAAG	0.552													35	91					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94100891	94100891	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94100891G>A	uc001ybv.1	+	30	5359	c.5276G>A	c.(5275-5277)GGA>GAA	p.G1759E	KIAA1409_uc001ybs.1_Missense_Mutation_p.G1737E	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1914						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATGAAAAGGGGATCCCTGGGA	0.468													31	78					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94109943	94109943	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94109943G>A	uc001ybv.1	+	33	5679	c.5596G>A	c.(5596-5598)GAG>AAG	p.E1866K	KIAA1409_uc001ybs.1_Missense_Mutation_p.E1844K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2021						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATACGATGAAGAGACACTTGG	0.483													36	71					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94112962	94112962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94112962C>T	uc001ybv.1	+	34	5788	c.5705C>T	c.(5704-5706)TCC>TTC	p.S1902F	KIAA1409_uc001ybs.1_Missense_Mutation_p.S1880F	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2057						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AGATTGGCATCCAGTACTACC	0.393													19	44					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94156635	94156635	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94156635C>T	uc001ybv.1	+	44	6993	c.6910C>T	c.(6910-6912)CCA>TCA	p.P2304S	KIAA1409_uc001ybs.1_Missense_Mutation_p.P2282S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2459						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GATTGGATTTCCAGAGCAATC	0.453													20	101					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94158125	94158125	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94158125C>T	uc001ybv.1	+	45	7038	c.6955C>T	c.(6955-6957)CAC>TAC	p.H2319Y	KIAA1409_uc001ybs.1_Missense_Mutation_p.H2297Y	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2474	Helical; (Potential).					integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CTCCCTCTTCCACGCGTTCAT	0.532													30	84					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94173221	94173221	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94173221G>A	uc001ybv.1	+	48	7497	c.7414G>A	c.(7414-7416)GAA>AAA	p.E2472K	KIAA1409_uc001ybs.1_Missense_Mutation_p.E2450K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2627						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CCAGTCCTCGGAAGCAGCCTC	0.527													20	66					0	0	1	0	0
PRIMA1	145270	broad.mit.edu	37	14	94187839	94187839	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94187839C>T	uc001ybw.1	-	5	455	c.413G>A	c.(412-414)AGT>AAT	p.S138N	PRIMA1_uc001ybx.1_RNA	NM_178013	NP_821092	Q86XR5	PRIMA_HUMAN	proline rich membrane anchor 1 precursor	138	Cytoplasmic (Potential).				neurotransmitter catabolic process	cell junction|integral to membrane|synapse				large_intestine(1)|skin(1)	2		all_cancers(154;0.127)		Epithelial(152;0.138)|COAD - Colon adenocarcinoma(157;0.229)		CTGCGAAGCACTCATGGGATA	0.582													11	54					0	0	1	0	0
PRIMA1	145270	broad.mit.edu	37	14	94203587	94203587	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94203587C>T	uc001ybw.1	-	4	401	c.359G>A	c.(358-360)AGG>AAG	p.R120K	PRIMA1_uc001ybx.1_RNA	NM_178013	NP_821092	Q86XR5	PRIMA_HUMAN	proline rich membrane anchor 1 precursor	120	Cytoplasmic (Potential).				neurotransmitter catabolic process	cell junction|integral to membrane|synapse				large_intestine(1)|skin(1)	2		all_cancers(154;0.127)		Epithelial(152;0.138)|COAD - Colon adenocarcinoma(157;0.229)		GAGCACTCACCTTTTTATGGC	0.488													16	42					0	0	1	0	0
FAM181A	90050	broad.mit.edu	37	14	94394620	94394620	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94394620G>A	uc001ybz.1	+	3	482	c.175G>A	c.(175-177)GGC>AGC	p.G59S	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_5'UTR|FAM181A_uc001yca.1_5'UTR	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	59											0						CTCGTGCAGTGGCCCCCTGGT	0.607													26	56					0	0	1	0	0
FAM181A	90050	broad.mit.edu	37	14	94394743	94394743	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94394743C>T	uc001ybz.1	+	3	605	c.298C>T	c.(298-300)CGC>TGC	p.R100C	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.R38C|FAM181A_uc001yca.1_Missense_Mutation_p.R38C	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	100											0						CGTGGACCATCGCAAGTACCT	0.612													13	25					0	0	1	0	0
FAM181A	90050	broad.mit.edu	37	14	94395108	94395108	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94395108C>T	uc001ybz.1	+	3	970	c.663C>T	c.(661-663)CCC>CCT	p.P221P	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Silent_p.P159P|FAM181A_uc001yca.1_Silent_p.P159P	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	221											0						GACTGGGCCCCAGGGAGGGAC	0.627													15	35					0	0	1	0	0
OTUB2	78990	broad.mit.edu	37	14	94510998	94510998	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94510998G>A	uc001yci.2	+	5	530	c.370G>A	c.(370-372)GAC>AAC	p.D124N		NM_023112	NP_075601	Q96DC9	OTUB2_HUMAN	OTU domain, ubiquitin aldehyde binding 2	124	OTU.				cellular amino acid metabolic process|protein K48-linked deubiquitination|protein K63-linked deubiquitination		omega peptidase activity|protein binding|ubiquitin-specific protease activity				0		all_cancers(154;0.12)		Epithelial(152;0.124)|all cancers(159;0.21)|COAD - Colon adenocarcinoma(157;0.215)		GGTGTTCAACGACCAGAGTGC	0.587													15	45					0	0	1	0	0
DDX24	57062	broad.mit.edu	37	14	94527347	94527347	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94527347G>A	uc001ycj.2	-	4	1408	c.1309C>T	c.(1309-1311)CGT>TGT	p.R437C	DDX24_uc010twq.1_Missense_Mutation_p.R394C|DDX24_uc010twr.1_Missense_Mutation_p.R187C	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	437	Helicase ATP-binding.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		ATCTCAGGACGACGGTTCAGC	0.443													50	117					0	0	1	0	0
IFI27	3429	broad.mit.edu	37	14	94578046	94578046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94578046C>T	uc010tws.1	+	2	206	c.85C>T	c.(85-87)CAC>TAC	p.H29Y	IFI27_uc001ycm.1_RNA|IFI27_uc001ycn.1_Intron|IFI27_uc001yco.2_Silent_p.L6L	NM_005532	NP_005523	P40305	IFI27_HUMAN	interferon, alpha-inducible protein 27 isoform	Error:Variant_position_missing_in_P40305_after_alignment					activation of caspase activity|activation of pro-apoptotic gene products|induction of apoptosis by extracellular signals|type I interferon-mediated signaling pathway	integral to membrane|mitochondrion					0				Epithelial(152;0.112)|all cancers(159;0.187)|COAD - Colon adenocarcinoma(157;0.206)		CCTCTGCTCTCACCTCATCAG	0.597													11	74					0	0	1	0	0
IFI27	3429	broad.mit.edu	37	14	94578120	94578120	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94578120G>A	uc010tws.1	+	2	279	c.158_splice	c.e2+1	p.G53_splice	IFI27_uc001ycm.1_Splice_Site|IFI27_uc001ycn.1_Intron|IFI27_uc001yco.2_Splice_Site_p.A31_splice	NM_005532	NP_005523	P40305	IFI27_HUMAN	interferon, alpha-inducible protein 27 isoform						activation of caspase activity|activation of pro-apoptotic gene products|induction of apoptosis by extracellular signals|type I interferon-mediated signaling pathway	integral to membrane|mitochondrion					0				Epithelial(152;0.112)|all cancers(159;0.187)|COAD - Colon adenocarcinoma(157;0.206)		TTGCCCCTGGGTGAGTGTTCC	0.667													14	48					0	0	1	0	0
IFI27L2	83982	broad.mit.edu	37	14	94594942	94594942	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94594942G>A	uc001ycq.2	-	3	164	c.108C>T	c.(106-108)TCC>TCT	p.S36S		NM_032036	NP_114425	Q9H2X8	I27L2_HUMAN	TLH29 protein precursor	36						integral to membrane					0						CTGCTATGGAGGACGCGGCGA	0.637													4	51					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94696948	94696948	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94696948G>A	uc001ycs.1	+	4	473	c.319G>A	c.(319-321)GAA>AAA	p.E107K		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	107						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TGCAGGAGTGGAAATGCAGTT	0.393													18	68					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94697645	94697645	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94697645G>A	uc001ycs.1	+	5	663	c.509G>A	c.(508-510)CGG>CAG	p.R170Q		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	170						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						GAAACCCTACGGCATGAGGTA	0.338													33	76					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94700010	94700010	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94700010C>T	uc001ycs.1	+	6	691	c.537C>T	c.(535-537)TCC>TCT	p.S179S		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	179						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						CACTTGTTTCCAAGGCACAAC	0.328													33	108					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94700041	94700041	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94700041C>T	uc001ycs.1	+	6	722	c.568C>T	c.(568-570)CGT>TGT	p.R190C		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	190						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						AGTCCAGTCTCGTTTAGTTAG	0.303													39	111					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94703957	94703957	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94703957G>A	uc001ycs.1	+	8	941	c.787G>A	c.(787-789)GAA>AAA	p.E263K		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	263	HEAT 2.					cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TTCTAGGGATGAAGGCAGCAG	0.348													51	134					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94707034	94707034	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94707034C>T	uc001ycs.1	+	9	1032	c.878C>T	c.(877-879)CCC>CTC	p.P293L		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	293						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						ACTATACTTCCCTTAGTGAAA	0.308													10	33					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94711930	94711930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94711930G>A	uc001ycs.1	+	13	1505	c.1351G>A	c.(1351-1353)GAT>AAT	p.D451N		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	451						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						AAAGGTACTAGATGCTCTTAT	0.308													23	66					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94718186	94718186	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94718186C>T	uc001ycs.1	+	16	1972	c.1818C>T	c.(1816-1818)TTC>TTT	p.F606F		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	606						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						GTAAATATTTCTTTCTACCTG	0.289													24	53					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94731275	94731275	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94731275G>A	uc001ycs.1	+	20	2342	c.2188G>A	c.(2188-2190)GAA>AAA	p.E730K		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	730						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TAAAATGTTTGAAAAGAAACG	0.313													40	127					0	0	1	0	0
SERPINA10	51156	broad.mit.edu	37	14	94754660	94754660	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94754660C>T	uc001yct.2	-	3	1421	c.955G>A	c.(955-957)GAC>AAC	p.D319N	SERPINA10_uc001ycu.3_Missense_Mutation_p.D319N	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	319					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		TCCACCAAGTCTGTGGTCAGG	0.502													11	94					0	0	1	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756444	94756444	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94756444C>T	uc001yct.2	-	2	953	c.487G>A	c.(487-489)GGG>AGG	p.G163R	SERPINA10_uc001ycu.3_Missense_Mutation_p.G163R	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	163					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GCAAAACTCCCCTGTGTGAGG	0.507													34	82					0	0	1	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756861	94756861	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94756861G>A	uc001yct.2	-	2	536	c.70C>T	c.(70-72)CCC>TCC	p.P24S	SERPINA10_uc001ycu.3_Missense_Mutation_p.P24S	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	24					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		TGAGGACTGGGGGCCAAGCCG	0.642													4	17					0	0	1	0	0
SERPINA6	866	broad.mit.edu	37	14	94776126	94776126	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94776126G>A	uc001ycv.2	-	3	935	c.831C>T	c.(829-831)ATC>ATT	p.I277I	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	277					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	TCAGTGCAGCGATGACTGTGT	0.562													34	89					0	0	1	0	0
SERPINA1	5265	broad.mit.edu	37	14	94845910	94845910	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94845910C>T	uc001ycx.3	-	4	1217	c.956G>A	c.(955-957)GGA>GAA	p.G319E	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Missense_Mutation_p.G319E|SERPINA1_uc010aux.2_Missense_Mutation_p.G319E|SERPINA1_uc001ycy.3_Missense_Mutation_p.G319E|SERPINA1_uc010auy.2_Missense_Mutation_p.G319E|SERPINA1_uc001ycz.3_Missense_Mutation_p.G319E|SERPINA1_uc010auz.2_Missense_Mutation_p.G319E|SERPINA1_uc010ava.2_Missense_Mutation_p.G319E|SERPINA1_uc001ydb.3_Missense_Mutation_p.G319E|SERPINA1_uc010avb.2_Missense_Mutation_p.G319E|SERPINA1_uc001ydc.3_Missense_Mutation_p.G319E|SERPINA1_uc001yda.1_Missense_Mutation_p.G319E	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	319					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	ATCATAGGTTCCAGTAATGGA	0.522									Alpha-1-Antitrypsin_Deficiency				13	137					0	0	1	0	0
SERPINA1	5265	broad.mit.edu	37	14	94847297	94847297	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94847297G>A	uc001ycx.3	-	3	1089	c.828C>T	c.(826-828)TTC>TTT	p.F276F	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Silent_p.F276F|SERPINA1_uc010aux.2_Silent_p.F276F|SERPINA1_uc001ycy.3_Silent_p.F276F|SERPINA1_uc010auy.2_Silent_p.F276F|SERPINA1_uc001ycz.3_Silent_p.F276F|SERPINA1_uc010auz.2_Silent_p.F276F|SERPINA1_uc010ava.2_Silent_p.F276F|SERPINA1_uc001ydb.3_Silent_p.F276F|SERPINA1_uc010avb.2_Silent_p.F276F|SERPINA1_uc001ydc.3_Silent_p.F276F|SERPINA1_uc001yda.1_Silent_p.F276F	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	276					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	CAGGCAGGAAGAAGATGGCGG	0.483									Alpha-1-Antitrypsin_Deficiency				38	69					0	0	1	0	0
SERPINA1	5265	broad.mit.edu	37	14	94847393	94847393	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94847393C>T	uc001ycx.3	-	3	993	c.732G>A	c.(730-732)ATG>ATA	p.M244I	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Missense_Mutation_p.M244I|SERPINA1_uc010aux.2_Missense_Mutation_p.M244I|SERPINA1_uc001ycy.3_Missense_Mutation_p.M244I|SERPINA1_uc010auy.2_Missense_Mutation_p.M244I|SERPINA1_uc001ycz.3_Missense_Mutation_p.M244I|SERPINA1_uc010auz.2_Missense_Mutation_p.M244I|SERPINA1_uc010ava.2_Missense_Mutation_p.M244I|SERPINA1_uc001ydb.3_Missense_Mutation_p.M244I|SERPINA1_uc010avb.2_Missense_Mutation_p.M244I|SERPINA1_uc001ydc.3_Missense_Mutation_p.M244I|SERPINA1_uc001yda.1_Missense_Mutation_p.M244I	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	244					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	AACGCTTCATCATAGGCACCT	0.532									Alpha-1-Antitrypsin_Deficiency				9	58					0	0	1	0	0
SERPINA1	5265	broad.mit.edu	37	14	94849449	94849449	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94849449C>T	uc001ycx.3	-	2	387	c.126G>A	c.(124-126)CAG>CAA	p.Q42Q	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Silent_p.Q42Q|SERPINA1_uc010aux.2_Silent_p.Q42Q|SERPINA1_uc001ycy.3_Silent_p.Q42Q|SERPINA1_uc010auy.2_Silent_p.Q42Q|SERPINA1_uc001ycz.3_Silent_p.Q42Q|SERPINA1_uc010auz.2_Silent_p.Q42Q|SERPINA1_uc010ava.2_Silent_p.Q42Q|SERPINA1_uc001ydb.3_Silent_p.Q42Q|SERPINA1_uc010avb.2_Silent_p.Q42Q|SERPINA1_uc001ydc.3_Silent_p.Q42Q|SERPINA1_uc001yda.1_Silent_p.Q42Q	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	42					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	TTGGGTGATCCTGATCATGGT	0.577									Alpha-1-Antitrypsin_Deficiency				14	65					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94909498	94909498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94909498G>A	uc001ydd.1	-	4	1042	c.982C>T	c.(982-984)CCC>TCC	p.P328S		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	328					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		CCAATTTGGGGAAGTATGTCT	0.438													33	88					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94914801	94914801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94914801C>T	uc001ydd.1	-	2	371	c.311G>A	c.(310-312)GGA>GAA	p.G104E		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	104					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		GAGGTTGAATCCCAGGCCCTC	0.587													41	90					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94915077	94915077	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94915077C>T	uc001ydd.1	-	2	95	c.35G>A	c.(34-36)GGG>GAG	p.G12E		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	12					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		GGCCAGGATCCCTGTTCCCAG	0.522													30	91					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94929538	94929538	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94929538G>A	uc001ydf.2	-	5	1361	c.1200C>T	c.(1198-1200)CCC>CCT	p.P400P	SERPINA9_uc001yde.2_Silent_p.P300P|SERPINA9_uc010avc.2_Silent_p.P251P|SERPINA9_uc001ydg.2_Silent_p.P364P	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	382					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		TGAAGTAAGAGGGGCCATCCT	0.498													29	108					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94933565	94933565	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94933565C>T	uc001ydf.2	-	3	998	c.837G>A	c.(835-837)ATG>ATA	p.M279I	SERPINA9_uc001yde.2_Missense_Mutation_p.M179I|SERPINA9_uc010avc.2_Missense_Mutation_p.M130I|SERPINA9_uc001ydg.2_Missense_Mutation_p.M243I|SERPINA9_uc001ydh.1_Missense_Mutation_p.M279I|SERPINA9_uc001ydi.1_Missense_Mutation_p.M243I	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	261					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		CCTTGTAATCCATCTGCAGCA	0.537													17	45					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94933697	94933697	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94933697G>A	uc001ydf.2	-	3	866	c.705C>T	c.(703-705)CAC>CAT	p.H235H	SERPINA9_uc001yde.2_Silent_p.H135H|SERPINA9_uc010avc.2_Silent_p.H86H|SERPINA9_uc001ydg.2_Silent_p.H199H|SERPINA9_uc001ydh.1_Silent_p.H235H|SERPINA9_uc001ydi.1_Silent_p.H199H	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	217					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		TATATTCAGGGTGAAAGGGCT	0.443													15	35					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94935629	94935629	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94935629G>A	uc001ydf.2	-	2	764	c.603C>T	c.(601-603)ACC>ACT	p.T201T	SERPINA9_uc001yde.2_Silent_p.T101T|SERPINA9_uc010avc.2_Silent_p.T52T|SERPINA9_uc001ydg.2_Silent_p.T165T|SERPINA9_uc001ydh.1_Silent_p.T201T|SERPINA9_uc001ydi.1_Silent_p.T165T	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	183					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		CCTTCCCTTGGGTCTTCTTTT	0.453													58	174					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94935757	94935757	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94935757C>T	uc001ydf.2	-	2	636	c.475G>A	c.(475-477)GAG>AAG	p.E159K	SERPINA9_uc001yde.2_Intron|SERPINA9_uc010avc.2_Missense_Mutation_p.E10K|SERPINA9_uc001ydg.2_Missense_Mutation_p.E123K|SERPINA9_uc001ydh.1_Missense_Mutation_p.E159K|SERPINA9_uc001ydi.1_Missense_Mutation_p.E123K	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	141					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		AGCTGCAGCTCCTTCTTGACG	0.527													15	139					0	0	1	0	0
SERPINA12	145264	broad.mit.edu	37	14	94962931	94962931	+	Silent	SNP	G	A	A	rs34365882	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:94962931G>A	uc001ydj.2	-	4	1480	c.684C>T	c.(682-684)TTC>TTT	p.F228F		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	228					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		TCTCCAGAAAGAAATCTTCCT	0.413													45	90					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030026	95030026	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95030026G>A	uc001ydk.2	+	2	273	c.207G>A	c.(205-207)GAG>GAA	p.E69E	SERPINA4_uc010avd.2_Silent_p.E106E|SERPINA4_uc001ydl.2_Silent_p.E69E	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	69					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		TCGCTTCGGAGACCCCGGGGA	0.602													35	79					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030033	95030033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95030033G>A	uc001ydk.2	+	2	280	c.214G>A	c.(214-216)GGG>AGG	p.G72R	SERPINA4_uc010avd.2_Missense_Mutation_p.G109R|SERPINA4_uc001ydl.2_Missense_Mutation_p.G72R	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	72					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		GGAGACCCCGGGGAAGAACAT	0.607													32	74					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95033491	95033491	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95033491C>T	uc001ydk.2	+	3	900	c.834C>T	c.(832-834)TTC>TTT	p.F278F	SERPINA4_uc010avd.2_Silent_p.F315F|SERPINA4_uc001ydl.2_Silent_p.F278F	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	278					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		CCGTGTTTTTCATTCTCCCTA	0.478													26	39					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95033554	95033554	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95033554G>A	uc001ydk.2	+	3	963	c.897G>A	c.(895-897)ATG>ATA	p.M299I	SERPINA4_uc010avd.2_Missense_Mutation_p.M336I|SERPINA4_uc001ydl.2_Missense_Mutation_p.M299I	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	299					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		AGATGCTAATGAGGTGGAACA	0.438													18	53					0	0	1	0	0
SERPINA5	5104	broad.mit.edu	37	14	95053750	95053750	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95053750C>T	uc001ydm.2	+	3	261	c.51C>T	c.(49-51)GCC>GCT	p.A17A	SERPINA5_uc010ave.2_Silent_p.A17A|SERPINA5_uc001ydn.1_Silent_p.A17A	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	17					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CTCAGGGGGCCTCCCTTCACC	0.592													39	92					0	0	1	0	0
SERPINA5	5104	broad.mit.edu	37	14	95056388	95056388	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95056388G>A	uc001ydm.2	+	4	840	c.630G>A	c.(628-630)GAG>GAA	p.E210E	SERPINA5_uc010ave.2_Silent_p.E210E|SERPINA3_uc001ydo.3_5'Flank	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	210					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CTAAGTGGGAGACAAGCTTCA	0.433													15	21					0	0	1	0	0
SERPINA5	5104	broad.mit.edu	37	14	95057176	95057176	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95057176C>T	uc001ydm.2	+	5	1191	c.981C>T	c.(979-981)TTC>TTT	p.F327F	SERPINA3_uc001ydo.3_5'Flank	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	327					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	GTAACGTCTTCACCTCCCATG	0.517													30	78					0	0	1	0	0
SERPINA5	5104	broad.mit.edu	37	14	95058564	95058564	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95058564G>A	uc001ydm.2	+	6	1419	c.1209G>A	c.(1207-1209)GTG>GTA	p.V403V	SERPINA3_uc001ydo.3_Intron	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	403					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	TTGGCAAAGTGAACCGCCCCT	0.532													117	258					0	0	1	0	0
SERPINA3	12	broad.mit.edu	37	14	95085657	95085657	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95085657G>A	uc001ydp.2	+	3	848	c.769G>A	c.(769-771)GAG>AAG	p.E257K	SERPINA3_uc001ydo.3_Missense_Mutation_p.E282K|SERPINA3_uc001ydr.2_Intron|SERPINA3_uc001ydq.2_Missense_Mutation_p.E257K|SERPINA3_uc001yds.2_Missense_Mutation_p.E257K|SERPINA3_uc010avg.2_Missense_Mutation_p.E257K	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	257					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		CTTCCGGGACGAGGAGCTGTC	0.502													26	43					0	0	1	0	0
SERPINA3	12	broad.mit.edu	37	14	95085787	95085787	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95085787G>A	uc001ydp.2	+	3	978	c.899G>A	c.(898-900)AGA>AAA	p.R300K	SERPINA3_uc001ydo.3_Missense_Mutation_p.R325K|SERPINA3_uc001ydr.2_Intron|SERPINA3_uc001ydq.2_Missense_Mutation_p.R300K|SERPINA3_uc001yds.2_Missense_Mutation_p.R300K|SERPINA3_uc010avg.2_Missense_Mutation_p.R300K	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	300					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		AAGCGGTGGAGAGACTCTCTG	0.557													11	47					0	0	1	0	0
SERPINA3	12	broad.mit.edu	37	14	95088716	95088716	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95088716C>T	uc001ydp.2	+	4	1035	c.956C>T	c.(955-957)TCG>TTG	p.S319L	SERPINA3_uc001ydo.3_Missense_Mutation_p.S344L|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.S319L|SERPINA3_uc001yds.2_Missense_Mutation_p.S319L|SERPINA3_uc010avg.2_Missense_Mutation_p.S319L	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	319					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		TTTTCCATCTCGAGGGACTAT	0.498													27	105					0	0	1	0	0
SERPINA3	12	broad.mit.edu	37	14	95090041	95090041	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95090041G>A	uc001ydp.2	+	5	1241	c.1162G>A	c.(1162-1164)GAG>AAG	p.E388K	SERPINA3_uc001ydo.3_Missense_Mutation_p.E413K|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.E388K|SERPINA3_uc001yds.2_Missense_Mutation_p.E388K|SERPINA3_uc010avg.2_Missense_Mutation_p.E388K	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	388	RCL.				acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		TGCATTAGTGGAGACAAGGAC	0.493													37	100					0	0	1	0	0
SERPINA13	388007	broad.mit.edu	37	14	95107644	95107644	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95107644G>A	uc001ydt.2	+	2	249	c.161G>A	c.(160-162)GGA>GAA	p.G54E		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						TCAGACCAAGGACCCCAGAGG	0.542													7	20					0	0	1	0	0
SERPINA13	388007	broad.mit.edu	37	14	95108164	95108164	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95108164G>A	uc001ydt.2	+	2	769	c.681G>A	c.(679-681)GGG>GGA	p.G227G		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						AGACCCAGGGGAAGCTCGGGG	0.592													44	137					0	0	1	0	0
SERPINA13	388007	broad.mit.edu	37	14	95109994	95109994	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95109994C>T	uc001ydt.2	+	3	1031	c.943C>T	c.(943-945)CCC>TCC	p.P315S		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						CTTCATCTTCCCCAACAGGGG	0.587													11	26					0	0	1	0	0
SERPINA13	388007	broad.mit.edu	37	14	95111341	95111341	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95111341G>A	uc001ydt.2	+	4	1161	c.1073G>A	c.(1072-1074)AGA>AAA	p.R358K		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						AGAACCTGCAGACTGGAGATG	0.502													15	54					0	0	1	0	0
CLMN	79789	broad.mit.edu	37	14	95670166	95670166	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95670166G>A	uc001yef.2	-	9	1636	c.1520C>T	c.(1519-1521)TCC>TTC	p.S507F		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	507						integral to membrane	actin binding				0				Epithelial(152;0.193)		ACCATTACAGGAAGAAGACTG	0.468													15	44					0	0	1	0	0
C14orf49	161176	broad.mit.edu	37	14	95921884	95921884	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95921884G>A	uc001yei.3	-	5	982	c.967C>T	c.(967-969)CTG>TTG	p.L323L	C14orf49_uc010avi.2_Silent_p.L323L|C14orf49_uc001yej.1_Silent_p.L323L	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	323	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		AGGCCCCGCAGCCGCTCCTCC	0.622													41	114					0	0	1	0	0
C14orf49	161176	broad.mit.edu	37	14	95932532	95932532	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:95932532G>A	uc001yei.3	-	3	378	c.363C>T	c.(361-363)GCC>GCT	p.A121A	C14orf49_uc010avi.2_Silent_p.A121A|C14orf49_uc001yej.1_Silent_p.A121A	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	121	Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		ACTCATCTCGGGCCAGCAGGT	0.617													19	102					0	0	1	0	0
TCL1B	9623	broad.mit.edu	37	14	96157628	96157628	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96157628C>T	uc001yez.2	+	3	399	c.357C>T	c.(355-357)GTC>GTT	p.V119V	TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL1B_uc001yfa.2_Silent_p.V119V	NM_004918	NP_004909	O95988	TCL1B_HUMAN	T-cell leukemia/lymphoma 1B	119										ovary(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		AGCAGCTGGTCCTAACATATC	0.562													8	23					0	0	1	0	0
TCL1A	8115	broad.mit.edu	37	14	96178115	96178115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96178115G>A	uc001yfc.3	-	3	452	c.322C>T	c.(322-324)CTC>TTC	p.L108F	TCL1A_uc001yfb.3_Missense_Mutation_p.L108F	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A	108					multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		AGCAGCTCGAGAAGCATGTCC	0.562			T	TRA@	T-CLL								8	19					0	0	1	0	0
BDKRB2	624	broad.mit.edu	37	14	96707226	96707226	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96707226C>T	uc010avm.1	+	3	757	c.561C>T	c.(559-561)CTC>CTT	p.L187L	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.L160L|BDKRB2_uc001yfg.2_Silent_p.L187L	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	187	Helical; Name=4; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		GTACGCTGCTCCTGAGCTCAC	0.612													21	72					0	0	1	0	0
BDKRB1	623	broad.mit.edu	37	14	96730073	96730073	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96730073C>T	uc001yfh.2	+	3	262	c.54C>T	c.(52-54)CTC>CTT	p.L18L	BDKRB1_uc010avn.2_Silent_p.L18L	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	18	Extracellular (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		AGAGCCAGCTCTTCCCTCAAA	0.488													12	21					0	0	1	0	0
BDKRB1	623	broad.mit.edu	37	14	96730546	96730546	+	Missense_Mutation	SNP	G	A	A	rs145002930		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96730546G>A	uc001yfh.2	+	3	735	c.527G>A	c.(526-528)CGA>CAA	p.R176Q	BDKRB1_uc010avn.2_Missense_Mutation_p.R176Q	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	176	Helical; Name=4; (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		TTCCTGCTGCGATCCATCCAA	0.612													36	84					0	0	1	0	0
BDKRB1	623	broad.mit.edu	37	14	96730673	96730673	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96730673C>T	uc001yfh.2	+	3	862	c.654C>T	c.(652-654)ATC>ATT	p.I218I	BDKRB1_uc010avn.2_Silent_p.I218I	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	218	Helical; Name=5; (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		TGGCTGCGATCGTCTTCTTCA	0.582													14	48					0	0	1	0	0
BDKRB1	623	broad.mit.edu	37	14	96731038	96731038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96731038C>T	uc001yfh.2	+	3	1227	c.1019C>T	c.(1018-1020)TCA>TTA	p.S340L	BDKRB1_uc010avn.2_Intron	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	340	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		CCAATATCTTCATCCCATAGG	0.388													65	162					0	0	1	0	0
ATG2B	55102	broad.mit.edu	37	14	96777479	96777479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96777479G>A	uc001yfi.2	-	28	4501	c.4136C>T	c.(4135-4137)CCT>CTT	p.P1379L		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1379										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		AAAGGCTCCAGGCTTCATATC	0.448													38	121					0	0	1	0	0
ATG2B	55102	broad.mit.edu	37	14	96781867	96781867	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96781867G>T	uc001yfi.2	-	22	3780	c.3415C>A	c.(3415-3417)CGC>AGC	p.R1139S		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1139										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		CAGTGTGGGCGGGTTGAGCTG	0.428													8	43					3.09899e-07	3.10556e-07	1	1	0
ATG2B	55102	broad.mit.edu	37	14	96788538	96788538	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96788538G>A	uc001yfi.2	-	18	3155	c.2790C>T	c.(2788-2790)ATC>ATT	p.I930I		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	930										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		GAGAATTGCTGATTGCTTTAT	0.333													30	50					0	0	1	0	0
ATG2B	55102	broad.mit.edu	37	14	96792160	96792160	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96792160G>A	uc001yfi.2	-	15	2628	c.2263C>T	c.(2263-2265)CGC>TGC	p.R755C		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	755										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		ATTGGGAAGCGAACAGAAAGG	0.413													11	103					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96875242	96875242	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96875242G>A	uc001yfn.2	+	4	506	c.462G>A	c.(460-462)ACG>ACA	p.T154T		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	154	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		TACTGTCGACGGTGATGACTT	0.473													17	69					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96904252	96904252	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96904252G>A	uc001yfn.2	+	6	734	c.690G>A	c.(688-690)AAG>AAA	p.K230K		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	230	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CATTTTTTAAGGTATGGCTTT	0.398													6	64					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96909112	96909112	+	Missense_Mutation	SNP	G	A	A	rs112200493		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96909112G>A	uc001yfn.2	+	7	780	c.736G>A	c.(736-738)GGA>AGA	p.G246R		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	246	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		TTTTGGCGATGGAACAAATGT	0.423													60	137					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96916161	96916161	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96916161C>T	uc001yfn.2	+	9	937	c.893C>T	c.(892-894)CCT>CTT	p.P298L		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	298	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		AATACTGGCCCTGGGAAAATC	0.308													17	36					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96937849	96937849	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96937849G>A	uc001yfn.2	+	13	1436	c.1392G>A	c.(1390-1392)ATG>ATA	p.M464I		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	464	Adenylate kinase.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		TTAGATTTATGAAAGAAAAGC	0.289													22	52					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96944880	96944880	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:96944880G>A	uc001yfn.2	+	15	1678	c.1634G>A	c.(1633-1635)GGG>GAG	p.G545E		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	545					cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		ATCGTGGCGGGGACCCACTAC	0.502													27	75					0	0	1	0	0
PAPOLA	10914	broad.mit.edu	37	14	97002296	97002296	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:97002296C>T	uc001yfq.2	+	11	1200	c.990C>T	c.(988-990)TCC>TCT	p.S330S	PAPOLA_uc001yfr.2_Silent_p.S330S|PAPOLA_uc010twv.1_Silent_p.S330S|PAPOLA_uc010avp.2_Silent_p.S80S	NM_032632	NP_116021	P51003	PAPOA_HUMAN	poly(A) polymerase alpha	330					mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|RNA binding				0		all_cancers(154;0.0555)|all_epithelial(191;0.149)|Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.213)		ACAATGTGTCCGTTTCAACAC	0.413													37	74					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99640764	99640764	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:99640764C>T	uc001yga.2	-	4	2676	c.2409G>A	c.(2407-2409)AAG>AAA	p.K803K	BCL11B_uc001ygb.2_Silent_p.K732K	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	803	C2H2-type 4.					nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		TCTTGAACACCTTGCCGCAGT	0.587			T	TLX3	T-ALL								4	19					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99640962	99640962	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:99640962G>A	uc001yga.2	-	4	2478	c.2211C>T	c.(2209-2211)TTC>TTT	p.F737F	BCL11B_uc001ygb.2_Silent_p.F666F	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	737						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		ACGACGTGGCGAAGGGCGACT	0.706			T	TLX3	T-ALL								9	11					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99723945	99723945	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:99723945C>T	uc001yga.2	-	2	557	c.290G>A	c.(289-291)AGC>AAC	p.S97N	BCL11B_uc001ygb.2_Missense_Mutation_p.S97N	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	97						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		GGGTGGCGGGCTGTCCTTGTC	0.597			T	TLX3	T-ALL								7	92					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99724046	99724046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:99724046C>T	uc001yga.2	-	2	456	c.189G>A	c.(187-189)ATG>ATA	p.M63I	BCL11B_uc001ygb.2_Missense_Mutation_p.M63I	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	63						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		AGGGGAAGTTCATTTGACACT	0.577			T	TLX3	T-ALL								27	56					0	0	1	0	0
HHIPL1	84439	broad.mit.edu	37	14	100118719	100118719	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100118719G>A	uc010avs.2	+	2	479	c.414G>A	c.(412-414)CTG>CTA	p.L138L	HHIPL1_uc001ygl.1_Silent_p.L138L	NM_001127258	NP_001120730	Q96JK4	HIPL1_HUMAN	HHIP-like protein 1 isoform a	138					carbohydrate metabolic process	extracellular region|membrane	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding|scavenger receptor activity			skin(2)	2		Melanoma(154;0.128)				TCTGGGCGCTGGAGGGCAACC	0.602													12	58					0	0	1	0	0
HHIPL1	84439	broad.mit.edu	37	14	100123421	100123421	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100123421C>T	uc010avs.2	+	3	1052	c.987C>T	c.(985-987)TTC>TTT	p.F329F	HHIPL1_uc001ygl.1_Silent_p.F329F	NM_001127258	NP_001120730	Q96JK4	HIPL1_HUMAN	HHIP-like protein 1 isoform a	329					carbohydrate metabolic process	extracellular region|membrane	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding|scavenger receptor activity			skin(2)	2		Melanoma(154;0.128)				TCTACATCTTCACTGGAGATG	0.507													147	357					0	0	1	0	0
HHIPL1	84439	broad.mit.edu	37	14	100129237	100129237	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100129237C>T	uc010avs.2	+	6	1592	c.1527C>T	c.(1525-1527)AAC>AAT	p.N509N	HHIPL1_uc001ygl.1_Silent_p.N509N	NM_001127258	NP_001120730	Q96JK4	HIPL1_HUMAN	HHIP-like protein 1 isoform a	509					carbohydrate metabolic process	extracellular region|membrane	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding|scavenger receptor activity			skin(2)	2		Melanoma(154;0.128)				TCCAAGAGAACCCAGGGACAG	0.542													8	51					0	0	1	0	0
CYP46A1	10858	broad.mit.edu	37	14	100182195	100182195	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100182195C>T	uc001ygo.2	+	8	742	c.742C>T	c.(742-744)CGC>TGC	p.R248C	CYP46A1_uc001ygp.2_Missense_Mutation_p.R95C	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	248					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				GGAGAGCATTCGCTTCCTGCG	0.607													34	59					0	0	1	0	0
CYP46A1	10858	broad.mit.edu	37	14	100182497	100182497	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100182497G>A	uc001ygo.2	+	9	868	c.868G>A	c.(868-870)GAG>AAG	p.E290K	CYP46A1_uc001ygp.2_Missense_Mutation_p.E137K	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	290					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				CCAGGACGACGAGGGTCTGCT	0.522													21	89					0	0	1	0	0
CYP46A1	10858	broad.mit.edu	37	14	100182517	100182517	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100182517C>T	uc001ygo.2	+	9	888	c.888C>T	c.(886-888)TTC>TTT	p.F296F	CYP46A1_uc001ygp.2_Silent_p.F143F	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	296					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				TGGACAACTTCGTCACCTTCT	0.542													32	63					0	0	1	0	0
CYP46A1	10858	broad.mit.edu	37	14	100192536	100192536	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100192536C>T	uc001ygo.2	+	14	1275	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F	CYP46A1_uc001ygp.2_Silent_p.F262F	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	425					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				GGCCACGGTTCACCTACTTCC	0.607													15	47					0	0	1	0	0
EML1	2009	broad.mit.edu	37	14	100376662	100376662	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100376662C>T	uc001ygs.2	+	12	1392	c.1323C>T	c.(1321-1323)ATC>ATT	p.I441I	EML1_uc010tww.1_Silent_p.I429I|EML1_uc001ygq.2_Silent_p.I460I|EML1_uc001ygr.2_Silent_p.I460I	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	441	WD 4.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				GTGGCAACATCTTAGTATGGG	0.358													23	60					0	0	1	0	0
EML1	2009	broad.mit.edu	37	14	100380631	100380631	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100380631C>T	uc001ygs.2	+	14	1679	c.1610C>T	c.(1609-1611)CCC>CTC	p.P537L	EML1_uc010tww.1_Missense_Mutation_p.P525L|EML1_uc001ygr.2_Missense_Mutation_p.P556L	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	537						cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				GACTTCACACCCATTACTCAG	0.493													27	72					0	0	1	0	0
EML1	2009	broad.mit.edu	37	14	100380924	100380924	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100380924G>A	uc001ygs.2	+	15	1711	c.1642G>A	c.(1642-1644)GGA>AGA	p.G548R	EML1_uc010tww.1_Missense_Mutation_p.G536R|EML1_uc001ygr.2_Missense_Mutation_p.G567R	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	548	WD 6.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				TGAGCTCTGGGGACTGGCCAT	0.537													6	46					0	0	1	0	0
EVL	51466	broad.mit.edu	37	14	100551165	100551165	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100551165C>T	uc001ygt.2	+	2	386	c.147C>T	c.(145-147)GTC>GTT	p.V49V	EVL_uc001ygv.2_Silent_p.V55V|EVL_uc001ygu.2_Silent_p.V51V|EVL_uc010avu.2_5'UTR	NM_016337	NP_057421	Q9UI08	EVL_HUMAN	Enah/Vasp-like	49	WH1.				actin polymerization or depolymerization|axon guidance|cell surface receptor linked signaling pathway|organ morphogenesis	cytoskeleton|cytosol|focal adhesion|lamellipodium	actin binding|profilin binding|SH3 domain binding			large_intestine(2)|ovary(1)	3		Melanoma(154;0.152)				CCTTCAGAGTCGTTGGAGTCA	0.527													10	87					0	0	1	0	0
EVL	51466	broad.mit.edu	37	14	100563966	100563966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100563966C>T	uc001ygt.2	+	3	562	c.323C>T	c.(322-324)GCC>GTC	p.A108V	EVL_uc001ygv.2_Missense_Mutation_p.A114V|EVL_uc001ygu.2_Missense_Mutation_p.A110V|EVL_uc010avu.2_5'UTR	NM_016337	NP_057421	Q9UI08	EVL_HUMAN	Enah/Vasp-like	108	WH1.				actin polymerization or depolymerization|axon guidance|cell surface receptor linked signaling pathway|organ morphogenesis	cytoskeleton|cytosol|focal adhesion|lamellipodium	actin binding|profilin binding|SH3 domain binding			large_intestine(2)|ovary(1)	3		Melanoma(154;0.152)				ATGCTGTTTGCCCTGAACATC	0.522													10	69					0	0	1	0	0
DEGS2	123099	broad.mit.edu	37	14	100615443	100615443	+	Silent	SNP	G	A	A	rs145891510		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100615443G>A	uc001ygx.2	-	2	775	c.687C>T	c.(685-687)TTC>TTT	p.F229F		NM_206918	NP_996801	Q6QHC5	DEGS2_HUMAN	degenerative spermatocyte homolog 2, lipid	229	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	sphingosine hydroxylase activity				0		Melanoma(154;0.212)				GCTCGGCCACGAAGTGGCCCG	0.622													37	90					0	0	1	0	0
DEGS2	123099	broad.mit.edu	37	14	100615658	100615658	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100615658G>A	uc001ygx.2	-	2	560	c.472C>T	c.(472-474)CGC>TGC	p.R158C		NM_206918	NP_996801	Q6QHC5	DEGS2_HUMAN	degenerative spermatocyte homolog 2, lipid	158					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	sphingosine hydroxylase activity				0		Melanoma(154;0.212)				AGCAGCTTGCGGGCGGGTGTG	0.662													17	35					0	0	1	0	0
WARS	7453	broad.mit.edu	37	14	100813129	100813129	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100813129G>A	uc001yhf.1	-	6	864	c.780C>T	c.(778-780)TTC>TTT	p.F260F	WARS_uc001yhe.1_Silent_p.F66F|WARS_uc001yhg.1_Silent_p.F260F|WARS_uc001yhh.1_Silent_p.F260F|WARS_uc001yhi.1_Silent_p.F219F|WARS_uc001yhj.1_Silent_p.F219F|WARS_uc001yhk.1_Silent_p.F219F|WARS_uc001yhl.1_Silent_p.F260F	NM_173701	NP_776049	P23381	SYWC_HUMAN	tryptophanyl-tRNA synthetase isoform a	260					angiogenesis|negative regulation of cell proliferation|regulation of angiogenesis|tryptophanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|protein binding|tryptophan-tRNA ligase activity			breast(1)	1		all_cancers(154;0.00223)|all_lung(585;2.48e-06)|all_epithelial(191;0.000564)|Melanoma(154;0.152)			L-Tryptophan(DB00150)	TCACTTGGTTGAAGGTAACAT	0.488													14	72					0	0	1	0	0
WDR25	79446	broad.mit.edu	37	14	100847882	100847882	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100847882C>T	uc010avx.2	+	2	714	c.621C>T	c.(619-621)GCC>GCT	p.A207A	WDR25_uc001yhm.2_Silent_p.A199A|WDR25_uc001yhn.2_Silent_p.A207A|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_5'Flank	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	207											0		Melanoma(154;0.212)				CAGGGCGTGCCCCAGCCCCTC	0.547													40	100					0	0	1	0	0
WDR25	79446	broad.mit.edu	37	14	100950384	100950384	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:100950384C>T	uc010avx.2	+	4	1117	c.1024C>T	c.(1024-1026)CAT>TAT	p.H342Y	WDR25_uc001yhm.2_Missense_Mutation_p.H334Y|WDR25_uc001yhn.2_Missense_Mutation_p.H342Y|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_Missense_Mutation_p.H85Y	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	342	WD 3.										0		Melanoma(154;0.212)				CTTGAAATTCCATCCAAAAGA	0.398													46	127					0	0	1	0	0
RTL1	388015	broad.mit.edu	37	14	101348054	101348054	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101348054C>T	uc010txj.1	-	1	3131	c.3072G>A	c.(3070-3072)AGG>AGA	p.R1024R	MIR433_hsa-mir-433|MI0001723_5'Flank|uc001yig.3_5'Flank|MIR127_hsa-mir-127|MI0000472_5'Flank|MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	1024										pancreas(1)	1						TCGATGGATCCCTGGGGAATC	0.577													3	11					0	0	1	0	0
RTL1	388015	broad.mit.edu	37	14	101348213	101348213	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101348213G>A	uc010txj.1	-	1	2972	c.2913C>T	c.(2911-2913)GTC>GTT	p.V971V	MIR433_hsa-mir-433|MI0001723_5'Flank|uc001yig.3_5'Flank|MIR127_hsa-mir-127|MI0000472_5'Flank|MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	971										pancreas(1)	1						AGAAGAAGAAGACCCAATGCC	0.552													34	134					0	0	1	0	0
RTL1	388015	broad.mit.edu	37	14	101350846	101350846	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101350846C>T	uc010txj.1	-	1	339	c.280G>A	c.(280-282)GAC>AAC	p.D94N	MIR432_hsa-mir-432|MI0003133_RNA|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	94										pancreas(1)	1						TGGAGTAGGTCATTGGGTGGA	0.532													40	56					0	0	1	0	0
RTL1	388015	broad.mit.edu	37	14	101351026	101351026	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101351026C>T	uc010txj.1	-	1	159	c.100G>A	c.(100-102)GAG>AAG	p.E34K	uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	34										pancreas(1)	1						GACGTCGCCTCGGTGGTGTTG	0.572													13	24					0	0	1	0	0
MIR299	407023	broad.mit.edu	37	14	101490176	101490176	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101490176G>A	hsa-mir-299|MI0000744	+			c.46G>A			uc001yjx.1_RNA|uc010awb.1_5'Flank|MIR380_hsa-mir-380|MI0000788_5'Flank|MIR1197_hsa-mir-1197|MI0006656_5'Flank|uc001yjy.1_5'Flank|MIR323_hsa-mir-323|MI0000807_5'Flank|MIR758_hsa-mir-758|MI0003757_5'Flank|MIR329-1_hsa-mir-329-1|MI0001725_5'Flank																	0						ATGTATGTGGGATGGTAAACC	0.532													22	64					0	0	1	0	0
MIR329-1	574408	broad.mit.edu	37	14	101493187	101493187	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101493187C>T	hsa-mir-329-1|MI0001725	+			c.66C>T			MIR329-2_hsa-mir-329-2|MI0001726_5'Flank|MIR494_hsa-mir-494|MI0003134_5'Flank|uc010txm.1_5'Flank																	0						CCTGGTTAACCTCTTTTCCAG	0.463													52	118					0	0	1	0	0
MIR329-2	574409	broad.mit.edu	37	14	101493518	101493518	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101493518C>T	hsa-mir-329-2|MI0001726	+			c.82C>T			MIR494_hsa-mir-494|MI0003134_5'Flank|uc010txm.1_5'Flank|hsa-mir-1193|MI0014205_5'Flank																	0						TTTCCAGTATCAAATCCCATC	0.463													38	128					0	0	1	0	0
MIR543	100126335	broad.mit.edu	37	14	101498367	101498367	+	RNA	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101498367A>C	hsa-mir-543|MI0005565	+			c.44A>C			MIR495_hsa-mir-495|MI0003135_5'Flank																	0						TTTATTTGTGACGAAACATTC	0.502													17	67					0	0	1	0	0
MIR654	724024	broad.mit.edu	37	14	101506599	101506599	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101506599C>T	hsa-mir-654|MI0003676	+			c.44C>T			MIR376B_hsa-mir-376b|MI0002466_5'Flank|uc010awc.1_5'Flank|MIR376A1_hsa-mir-376a-1|MI0000784_5'Flank|MIR300_hsa-mir-300|MI0005525_5'Flank|MIR1185-1_hsa-mir-1185-1|MI0003844_5'Flank																	0						GTGCTGAGTTCGTGCCATATG	0.577													5	12					0	0	1	0	0
MIR376B	574435	broad.mit.edu	37	14	101506843	101506843	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101506843G>A	hsa-mir-376b|MI0002466	+			c.71G>A			uc010awc.1_5'Flank|MIR376A1_hsa-mir-376a-1|MI0000784_5'Flank|MIR300_hsa-mir-300|MI0005525_5'Flank|MIR1185-1_hsa-mir-1185-1|MI0003844_5'Flank																	0						AATCATAGAGGAAAATCCATG	0.428													7	17					0	0	1	0	0
MIR409	574413	broad.mit.edu	37	14	101531683	101531683	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:101531683G>A	hsa-mir-409|MI0001735	+			c.47G>A			MIR412_hsa-mir-412|MI0002464_5'Flank|uc010txp.1_5'Flank|MIR369_hsa-mir-369|MI0000777_5'Flank|MIR410_hsa-mir-410|MI0002465_5'Flank|MIR656_hsa-mir-656|MI0003678_5'Flank																	0						TCTGGACGACGAATGTTGCTC	0.582													37	44					0	0	1	0	0
DIO3	1735	broad.mit.edu	37	14	102028226	102028226	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102028226G>A	uc010txq.1	+	1	539	c.315G>A	c.(313-315)GAG>GAA	p.E105E	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	105	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				AGGCGCACGAGGGCGGTCCGG	0.647													38	58					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102469297	102469297	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102469297C>T	uc001yks.2	+	23	5042	c.4878C>T	c.(4876-4878)TTC>TTT	p.F1626F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1626	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GGTCATCTTTCCCCAGGTAAG	0.463													22	48					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102470966	102470966	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102470966C>T	uc001yks.2	+	24	5159	c.4995C>T	c.(4993-4995)ATC>ATT	p.I1665I		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1665	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CGAGCATCATCCTGAACGAGG	0.378													25	54					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102476636	102476636	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102476636C>T	uc001yks.2	+	31	6409	c.6245C>T	c.(6244-6246)TCC>TTC	p.S2082F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2082	AAA 1 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CAGCTCTCTTCCCAAAGCCAT	0.408													18	89					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102477166	102477166	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102477166C>T	uc001yks.2	+	32	6659	c.6495C>T	c.(6493-6495)TTC>TTT	p.F2165F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2165					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CGGACGTGTTCCCTGGAGTCC	0.532													25	107					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102494353	102494353	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102494353C>T	uc001yks.2	+	48	9507	c.9343C>T	c.(9343-9345)CTG>TTG	p.L3115L		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3115	AAA 4 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TAAGATGGATCTGGAGAAGCC	0.478													15	234					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102500749	102500749	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102500749C>T	uc001yks.2	+	56	10878	c.10714C>T	c.(10714-10716)CTT>TTT	p.L3572F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3572	AAA 5 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TGCTGATGACCTTTGCACAGA	0.502													17	75					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102508054	102508054	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102508054C>T	uc001yks.2	+	65	12249	c.12085C>T	c.(12085-12087)CAC>TAC	p.H4029Y		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4029	AAA 6 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CGACCTGACCCACATTGTGGG	0.597													10	89					0	0	1	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102548620	102548620	+	Silent	SNP	G	A	A	rs113093780		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102548620G>A	uc001yku.3	-	10	2107	c.1917C>T	c.(1915-1917)GAC>GAT	p.D639D	HSP90AA1_uc001ykv.3_Silent_p.D761D	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	639					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	TAATGGAATGGTCAGGGTTTA	0.448													97	232					0	0	1	0	0
ZNF839	55778	broad.mit.edu	37	14	102802155	102802155	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102802155C>T	uc001ylo.2	+	5	1641	c.1291C>T	c.(1291-1293)CTG>TTG	p.L431L	ZNF839_uc010awk.1_Silent_p.L547L|ZNF839_uc001ylp.2_RNA|ZNF839_uc001ylq.1_Silent_p.L431L|ZNF839_uc001ylr.2_Silent_p.L356L|ZNF839_uc001yls.2_Silent_p.L46L|ZNF839_uc001ylt.2_Silent_p.L21L	NM_018335	NP_060805	A8K0R7	ZN839_HUMAN	zinc finger protein 839	431						intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						CCAGGAGACCCTGGAAATAAA	0.343													20	40					0	0	1	0	0
CINP	51550	broad.mit.edu	37	14	102816294	102816294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102816294C>T	uc001ylv.1	-	4	463	c.398G>A	c.(397-399)CGA>CAA	p.R133Q	CINP_uc001ylu.1_RNA	NM_032630	NP_116019	Q9BW66	CINP_HUMAN	cyclin-dependent kinase 2-interacting protein	133					cell cycle|cell division|DNA repair|DNA replication	nucleus	protein binding			large_intestine(1)	1						CAGAGGGGGTCGTTTACTCTC	0.413													20	45					0	0	1	0	0
TECPR2	9895	broad.mit.edu	37	14	102900631	102900631	+	Missense_Mutation	SNP	C	T	T	rs150165045		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102900631C>T	uc001ylw.1	+	9	1625	c.1477C>T	c.(1477-1479)CCT>TCT	p.P493S	TECPR2_uc010awl.2_Missense_Mutation_p.P493S|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	493							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						CTCCGAATTTCCTGGGGACAG	0.507													26	68					0	0	1	0	0
TECPR2	9895	broad.mit.edu	37	14	102904439	102904439	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102904439C>T	uc001ylw.1	+	10	2623	c.2475C>T	c.(2473-2475)TGC>TGT	p.C825C	TECPR2_uc010awl.2_Silent_p.C825C|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	825							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						ATATCTGGTGCCTGGACTACA	0.597											OREG0022547	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	146					0	0	1	0	0
TECPR2	9895	broad.mit.edu	37	14	102964006	102964006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:102964006C>T	uc001ylw.1	+	19	4179	c.4031C>T	c.(4030-4032)CCC>CTC	p.P1344L	TECPR2_uc010txx.1_Missense_Mutation_p.P507L	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	1344	TECPR 6.						protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GACAAGAACCCCGCCGGGGAC	0.672													6	19					0	0	1	0	0
TRAF3	7187	broad.mit.edu	37	14	103371731	103371731	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103371731C>T	uc001ymc.1	+	12	1670	c.1317C>T	c.(1315-1317)TCC>TCT	p.S439S	TRAF3_uc001yme.1_Silent_p.S414S|TRAF3_uc001ymd.1_Silent_p.S439S|TRAF3_uc010txy.1_Silent_p.S356S	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	439	MATH.				apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		AGACCCTGTCCCTTTACAGCC	0.577													35	58					0	0	1	0	0
AMN	81693	broad.mit.edu	37	14	103396997	103396997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103396997G>A	uc001ymg.3	+	12	1375	c.1342G>A	c.(1342-1344)GGG>AGG	p.G448R	AMN_uc001ymh.3_Missense_Mutation_p.G394R	NM_030943	NP_112205	Q9BXJ7	AMNLS_HUMAN	amnionless protein precursor	448	Cytoplasmic (Potential).				lipid metabolic process|lipoprotein metabolic process|multicellular organismal development	integral to membrane|plasma membrane					0				Colorectal(3;0.00739)|READ - Rectum adenocarcinoma(2;0.0336)|Epithelial(152;0.0363)|all cancers(159;0.147)	Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TCTGTTCGCCGGGGCCGAGGC	0.716													6	11					0	0	1	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103410325	103410325	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103410325G>A	uc001ymi.1	-	30	4543	c.4311C>T	c.(4309-4311)TAC>TAT	p.Y1437Y	CDC42BPB_uc001ymj.1_Silent_p.Y539Y	NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1437	CNH.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		AGCAAAGCAGGTACTCCTCGC	0.582													27	50					0	0	1	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103442096	103442096	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103442096G>A	uc001ymi.1	-	11	1664	c.1432C>T	c.(1432-1434)CTC>TTC	p.L478F		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	478	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		GAATTGCTGAGGGCCCGAGAT	0.517													14	222					0	0	1	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103442133	103442133	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103442133G>A	uc001ymi.1	-	11	1627	c.1395C>T	c.(1393-1395)ACC>ACT	p.T465T		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	465	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		GCACGGTCTGGGTGGACTCTG	0.597													12	221					0	0	1	0	0
C14orf73	91828	broad.mit.edu	37	14	103566713	103566713	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103566713C>T	uc001ymk.2	+	1	233	c.157C>T	c.(157-159)CTG>TTG	p.L53L		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	53											0		Melanoma(154;0.155)	Epithelial(46;0.221)			CCTGGGCTCCCTGAGGCAGGC	0.657													7	12					0	0	1	0	0
C14orf73	91828	broad.mit.edu	37	14	103566796	103566796	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103566796C>T	uc001ymk.2	+	1	316	c.240C>T	c.(238-240)TCC>TCT	p.S80S		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	80											0		Melanoma(154;0.155)	Epithelial(46;0.221)			GGCGAAGCTCCTGCTCCCTGT	0.672													13	25					0	0	1	0	0
C14orf73	91828	broad.mit.edu	37	14	103571339	103571339	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103571339G>A	uc001ymk.2	+	6	1472	c.1396G>A	c.(1396-1398)GCT>ACT	p.A466T		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	466											0		Melanoma(154;0.155)	Epithelial(46;0.221)			GTTTGAAAAGGCTTTTCTGGC	0.657											OREG0022947	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	60					0	0	1	0	0
TNFAIP2	7127	broad.mit.edu	37	14	103599731	103599731	+	Silent	SNP	G	A	A	rs147415735	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103599731G>A	uc001ymm.1	+	9	1709	c.1578G>A	c.(1576-1578)GTG>GTA	p.V526V	TNFAIP2_uc010awo.1_Intron|TNFAIP2_uc010txz.1_Silent_p.V195V|TNFAIP2_uc010tya.1_Silent_p.V9V	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	526					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			TGCACCTGGTGAAGGAGTACA	0.627													18	62					0	0	1	0	0
TNFAIP2	7127	broad.mit.edu	37	14	103599776	103599776	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103599776G>A	uc001ymm.1	+	9	1754	c.1623G>A	c.(1621-1623)AAG>AAA	p.K541K	TNFAIP2_uc010awo.1_Intron|TNFAIP2_uc010txz.1_Silent_p.K210K|TNFAIP2_uc010tya.1_Silent_p.K24K	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	541					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			TGGTCCTCAAGACGGCCGAGC	0.632													24	70					0	0	1	0	0
TNFAIP2	7127	broad.mit.edu	37	14	103601679	103601679	+	Silent	SNP	C	T	T	rs146608837	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:103601679C>T	uc001ymm.1	+	11	2078	c.1947C>T	c.(1945-1947)TCC>TCT	p.S649S	TNFAIP2_uc010awo.1_Silent_p.S309S|TNFAIP2_uc010txz.1_Silent_p.S318S|TNFAIP2_uc010tya.1_Silent_p.S132S	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	649					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			CCCTATTTTCCCTTATAAAGG	0.597													97	215					0	0	1	0	0
TDRD9	122402	broad.mit.edu	37	14	104472813	104472813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104472813C>T	uc001yom.3	+	16	1831	c.1801C>T	c.(1801-1803)CTT>TTT	p.L601F	TDRD9_uc001yon.3_Missense_Mutation_p.L339F	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	601					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				TTTAGCCCAACTTCCTGTAAA	0.378													28	64					0	0	1	0	0
TDRD9	122402	broad.mit.edu	37	14	104493142	104493142	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104493142G>A	uc001yom.3	+	28	3178	c.3148G>A	c.(3148-3150)GTC>ATC	p.V1050I	TDRD9_uc001yon.3_Missense_Mutation_p.V788I	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	1050					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				CCTTGTGAAGGTCTTCTCTGT	0.572													23	58					0	0	1	0	0
TDRD9	122402	broad.mit.edu	37	14	104508525	104508525	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104508525G>A	uc001yom.3	+	34	4004	c.3974_splice	c.e34+1	p.G1325_splice	TDRD9_uc001yon.3_Splice_Site_p.G872_splice	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9						cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				AGCTTTTAGGGTAAGCTGTGT	0.463													20	34					0	0	1	0	0
ASPG	374569	broad.mit.edu	37	14	104565220	104565220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104565220C>T	uc001yoq.1	+	6	604	c.544C>T	c.(544-546)CGG>TGG	p.R182W	ASPG_uc001yoo.1_Missense_Mutation_p.R210W|ASPG_uc001yop.1_Missense_Mutation_p.R182W|ASPG_uc001yor.1_Missense_Mutation_p.R182W	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	182	Asparaginase.				lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						TCAGCTGTTTCGGGGCAACCG	0.607													5	24					0	0	1	0	0
ASPG	374569	broad.mit.edu	37	14	104571689	104571689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104571689G>A	uc001yoq.1	+	10	1135	c.1075G>A	c.(1075-1077)GAG>AAG	p.E359K	ASPG_uc001yoo.1_Missense_Mutation_p.E387K|ASPG_uc001yop.1_Missense_Mutation_p.E359K|ASPG_uc001yor.1_Missense_Mutation_p.E359K	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	359					lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						CCTTCGGGGGGAGATGACGCC	0.677													5	32					0	0	1	0	0
ASPG	374569	broad.mit.edu	37	14	104575594	104575594	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104575594G>A	uc001yoq.1	+	13	1522	c.1462G>A	c.(1462-1464)GAA>AAA	p.E488K	ASPG_uc001yop.1_Missense_Mutation_p.E488K|ASPG_uc001yor.1_Missense_Mutation_p.E488K	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	488	ANK 4.				lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						GTTGCTGCGGGAAGCCGGGGC	0.652													9	28					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104638985	104638985	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104638985C>T	uc001yos.3	+	7	1400	c.1400C>T	c.(1399-1401)TCC>TTC	p.S467F		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	467	Kinesin-motor.				blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		TGCATTTTTTCCTTTGGCCAC	0.632													19	29					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104640107	104640107	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104640107G>A	uc001yos.3	+	10	1932	c.1932G>A	c.(1930-1932)AGG>AGA	p.R644R		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	644	Kinesin-motor.				blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		CGGCTGGCAGGGCCGGGGAGG	0.667													12	18					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104641424	104641424	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104641424G>A	uc001yos.3	+	12	2299	c.2299G>A	c.(2299-2301)GAC>AAC	p.D767N		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	767					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		CCTGGACCCCGACCGCACGCC	0.726													4	15					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104641701	104641701	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104641701G>A	uc001yos.3	+	12	2576	c.2576G>A	c.(2575-2577)GGA>GAA	p.G859E		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	859					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		GGTCCCTCAGGAGGTCCAGGT	0.711													9	18					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104642395	104642395	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104642395C>T	uc001yos.3	+	12	3270	c.3270C>T	c.(3268-3270)GCC>GCT	p.A1090A		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	1090					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		CCTCTCAGGCCCCTGAGGGGG	0.672													7	12					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104642755	104642755	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:104642755C>T	uc001yos.3	+	12	3630	c.3630C>T	c.(3628-3630)CTC>CTT	p.L1210L		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	1210					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		ACTCCAGCCTCCCCCGGAAAC	0.721													9	13					0	0	1	0	0
INF2	64423	broad.mit.edu	37	14	105169497	105169497	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105169497C>T	uc001ypb.2	+	3	590	c.447C>T	c.(445-447)GCC>GCT	p.A149A	INF2_uc010tyi.1_Silent_p.A149A|INF2_uc001ypc.2_Silent_p.A149A|INF2_uc001yoy.3_Silent_p.A149A|INF2_uc001ypa.2_Silent_p.A149A	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	149	GBD/FH3.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		TACTGGCTGCCCTGTGCATCT	0.652													14	40					0	0	1	0	0
INF2	64423	broad.mit.edu	37	14	105173304	105173304	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105173304C>T	uc001ypb.2	+	7	1044	c.901C>T	c.(901-903)CTG>TTG	p.L301L	INF2_uc010tyi.1_Silent_p.L301L|INF2_uc001ypc.2_Silent_p.L301L|INF2_uc010awz.1_5'Flank	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	301	GBD/FH3.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		CCTCCTGCACCTGGAGCCCAC	0.726													7	17					0	0	1	0	0
INF2	64423	broad.mit.edu	37	14	105180799	105180799	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105180799C>T	uc001ypb.2	+	21	3443	c.3300C>T	c.(3298-3300)GCC>GCT	p.A1100A	INF2_uc010tyi.1_Silent_p.A1100A|INF2_uc001ypc.2_Silent_p.A1100A|INF2_uc010awz.1_RNA	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	1100					actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		TGGAGGGGGCCTGGCCGGTGA	0.632													5	20					0	0	1	0	0
ADSSL1	122622	broad.mit.edu	37	14	105207212	105207212	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105207212C>T	uc001ypd.2	+	7	695	c.621C>T	c.(619-621)TTC>TTT	p.F207F	INF2_uc010tyi.1_Intron|ADSSL1_uc001ype.2_Silent_p.F250F|ADSSL1_uc001ypf.2_RNA	NM_152328	NP_689541	Q8N142	PURA1_HUMAN	adenylosuccinate synthase like 1 isoform 2	207					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(1)|central_nervous_system(1)	2		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.18)	L-Aspartic Acid(DB00128)	AGTCGATGTTCCCCACCCTGG	0.602													17	294					0	0	1	0	0
AKT1	207	broad.mit.edu	37	14	105239822	105239822	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105239822C>T	uc001ypk.2	-	9	1352	c.798G>A	c.(796-798)TCG>TCA	p.S266S	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Silent_p.S266S|AKT1_uc010axa.2_Silent_p.S266S|AKT1_uc001ypm.2_Silent_p.S266S|AKT1_uc001ypn.2_Silent_p.S266S|AKT1_uc001ypj.2_5'Flank|AKT1_uc010tyk.1_Silent_p.S204S	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	266	Protein kinase.				activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	CGTTCTTCTCCGAGTGCAGGT	0.672		1	Mis		breast|colorectal|ovarian|NSCLC								4	32					0	0	1	0	0
KIAA0284	283638	broad.mit.edu	37	14	105353206	105353206	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105353206C>T	uc010axb.2	+	12	2854	c.2630C>T	c.(2629-2631)CCC>CTC	p.P877L	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.P807L|KIAA0284_uc001yps.2_Missense_Mutation_p.P783L|KIAA0284_uc001ypt.2_5'Flank	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	877						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		GCCAGTGGTCCCCCAGCGCCC	0.677													15	47					0	0	1	0	0
KIAA0284	283638	broad.mit.edu	37	14	105353296	105353296	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105353296C>T	uc010axb.2	+	12	2944	c.2720C>T	c.(2719-2721)TCC>TTC	p.S907F	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.S837F|KIAA0284_uc001yps.2_Missense_Mutation_p.S813F|KIAA0284_uc001ypt.2_5'Flank	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	907						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		GACTTCCACTCCCAGGACACC	0.682													20	58					0	0	1	0	0
PLD4	122618	broad.mit.edu	37	14	105396385	105396385	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105396385G>A	uc001ypu.1	+	6	801	c.660G>A	c.(658-660)GTG>GTA	p.V220V	PLD4_uc010tyl.1_Silent_p.V227V	NM_138790	NP_620145	Q96BZ4	PLD4_HUMAN	phospholipase D4	220	PLD phosphodiesterase 1.				lipid catabolic process	integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity			central_nervous_system(1)|skin(1)	2		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.00067)|OV - Ovarian serous cystadenocarcinoma(23;0.00976)|Epithelial(46;0.0201)|GBM - Glioblastoma multiforme(11;0.116)		Choline(DB00122)	TCTGGGTTGTGGATGGACGGC	0.582													22	69					0	0	1	0	0
PLD4	122618	broad.mit.edu	37	14	105398476	105398476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105398476G>A	uc001ypu.1	+	9	1327	c.1186G>A	c.(1186-1188)GCG>ACG	p.A396T	PLD4_uc010tyl.1_Missense_Mutation_p.A403T	NM_138790	NP_620145	Q96BZ4	PLD4_HUMAN	phospholipase D4	396					lipid catabolic process	integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity			central_nervous_system(1)|skin(1)	2		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.00067)|OV - Ovarian serous cystadenocarcinoma(23;0.00976)|Epithelial(46;0.0201)|GBM - Glioblastoma multiforme(11;0.116)		Choline(DB00122)	GTCCCTGCAGGCGCTCAGCAA	0.731													7	22					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105404490	105404490	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105404490G>A	uc010axc.1	-	7	17418	c.17298C>T	c.(17296-17298)TCC>TCT	p.S5766S	AHNAK2_uc001ypx.2_Silent_p.S5666S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	5766						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TTCTTGCCGCGGATGTCACCA	0.542													21	38					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105405844	105405844	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105405844A>G	uc010axc.1	-	7	16064	c.15944T>C	c.(15943-15945)CTT>CCT	p.L5315P	AHNAK2_uc001ypx.2_Missense_Mutation_p.L5215P	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	5315						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGTTTCTGGAAGCCTCATGCC	0.507													19	31					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105407933	105407933	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105407933C>T	uc010axc.1	-	7	13975	c.13855G>A	c.(13855-13857)GAG>AAG	p.E4619K	AHNAK2_uc001ypx.2_Missense_Mutation_p.E4519K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4619						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCTACATCCTCGTGGGCCAGG	0.547													40	98					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409091	105409091	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105409091C>T	uc010axc.1	-	7	12817	c.12697G>A	c.(12697-12699)GGC>AGC	p.G4233S	AHNAK2_uc001ypx.2_Missense_Mutation_p.G4133S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4233						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ACCTGGGGGCCCTTGAGGGCC	0.647													84	235					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409179	105409179	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105409179C>T	uc010axc.1	-	7	12729	c.12609G>A	c.(12607-12609)GAG>GAA	p.E4203E	AHNAK2_uc001ypx.2_Silent_p.E4103E	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4203						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCAGGGGGCCCTCCGGGAGTT	0.652													81	190					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409275	105409275	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105409275G>A	uc010axc.1	-	7	12633	c.12513C>T	c.(12511-12513)TCC>TCT	p.S4171S	AHNAK2_uc001ypx.2_Silent_p.S4071S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4171						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCCCCTGCATGGAGGGGAGGC	0.632													106	251					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409973	105409973	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105409973C>T	uc010axc.1	-	7	11935	c.11815G>A	c.(11815-11817)GAG>AAG	p.E3939K	AHNAK2_uc001ypx.2_Missense_Mutation_p.E3839K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3939						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCTGGGGCCTCGACGTCCACC	0.597													90	288					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105410237	105410237	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105410237G>A	uc010axc.1	-	7	11671	c.11551C>T	c.(11551-11553)CTC>TTC	p.L3851F	AHNAK2_uc001ypx.2_Missense_Mutation_p.L3751F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3851						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGAATGCTGAGGTCAGTGGTC	0.632													84	180					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105414114	105414114	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105414114C>T	uc010axc.1	-	7	7794	c.7674G>A	c.(7672-7674)GAG>GAA	p.E2558E	AHNAK2_uc001ypx.2_Silent_p.E2458E	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2558						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGCCGGCTCCCTCCGGCACAG	0.627													93	198					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105414808	105414808	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105414808G>A	uc010axc.1	-	7	7100	c.6980C>T	c.(6979-6981)TCG>TTG	p.S2327L	AHNAK2_uc001ypx.2_Missense_Mutation_p.S2227L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2327						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CACCCCAAACGACAGCATCTT	0.602													33	362					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105415701	105415701	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105415701C>T	uc010axc.1	-	7	6207	c.6087G>A	c.(6085-6087)GGG>GGA	p.G2029G	AHNAK2_uc001ypx.2_Silent_p.G1929G	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2029						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCTTCAGGTCCCCCTGCATGG	0.662													86	88					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105415962	105415962	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105415962C>T	uc010axc.1	-	7	5946	c.5826G>A	c.(5824-5826)GTG>GTA	p.V1942V	AHNAK2_uc001ypx.2_Silent_p.V1842V	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1942						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CGGGGGCTGTCACTTCCGCCT	0.612													102	250					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105417287	105417287	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105417287G>A	uc010axc.1	-	7	4621	c.4501C>T	c.(4501-4503)CCG>TCG	p.P1501S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P1401S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1501						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCGAACGACGGCATCTTGAAC	0.602													45	289					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105421084	105421084	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105421084C>T	uc010axc.1	-	7	824	c.704G>A	c.(703-705)GGA>GAA	p.G235E	AHNAK2_uc001ypx.2_Missense_Mutation_p.G135E	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	235						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GTCCCCATCTCCTTCCAGAGT	0.537													14	24					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105421934	105421934	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105421934C>T	uc010axc.1	-	5	472	c.352G>A	c.(352-354)GAG>AAG	p.E118K	AHNAK2_uc001ypx.2_Missense_Mutation_p.E18K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	118	PDZ.					nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCCTCCACCTCTGTCTTCAGC	0.587													24	53					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105423001	105423001	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105423001G>A	uc010axc.1	-	4	359	c.239C>T	c.(238-240)TCT>TTT	p.S80F	AHNAK2_uc001ypx.2_5'UTR	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	80						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCTCCCAGCAGAACCTTGCCT	0.617													36	92					0	0	1	0	0
JAG2	3714	broad.mit.edu	37	14	105609479	105609479	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105609479G>A	uc001yqg.2	-	26	3674	c.3270C>T	c.(3268-3270)GCC>GCT	p.A1090A	JAG2_uc010axf.2_5'UTR|JAG2_uc001yqf.2_Silent_p.A494A|JAG2_uc001yqh.2_Silent_p.A1052A	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	1090	Helical; (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		GCACGCTGAAGGCACCACACA	0.692													19	37					0	0	1	0	0
PACS2	23241	broad.mit.edu	37	14	105843141	105843141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105843141C>T	uc001yqt.2	+	9	1013	c.838C>T	c.(838-840)CCC>TCC	p.P280S	PACS2_uc001yqs.2_Missense_Mutation_p.P205S|PACS2_uc001yqv.2_Missense_Mutation_p.P280S|PACS2_uc001yqu.2_Missense_Mutation_p.P280S	NM_015197	NP_056012	Q86VP3	PACS2_HUMAN	phosphofurin acidic cluster sorting protein 2	280					apoptosis|interspecies interaction between organisms	endoplasmic reticulum lumen|mitochondrion				pancreas(1)	1		all_cancers(154;0.0351)|all_epithelial(191;0.153)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.0145)|Epithelial(46;0.036)	Epithelial(152;0.138)		GGAGCACATCCCCGAGGCAGA	0.677													14	64					0	0	1	0	0
MTA1	9112	broad.mit.edu	37	14	105936526	105936526	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105936526G>A	uc001yqx.2	+	21	2309	c.2122G>A	c.(2122-2124)GAC>AAC	p.D708N	MTA1_uc001yqy.2_RNA|MTA1_uc001yrb.2_Missense_Mutation_p.D473N|CRIP2_uc010tyr.1_5'Flank|CRIP2_uc001yrc.2_5'Flank	NM_004689	NP_004680	Q13330	MTA1_HUMAN	metastasis associated protein	708					signal transduction	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(154;0.0293)|all_epithelial(191;0.128)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00897)|Epithelial(46;0.026)	Epithelial(152;0.19)		GCCCGTCAACGACGAGCCCAT	0.493													12	17					0	0	1	0	0
CRIP1	1396	broad.mit.edu	37	14	105954825	105954825	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:105954825G>A	uc001yri.3	+	5	325	c.211G>A	c.(211-213)GCC>ACC	p.A71T	C14orf80_uc001yrj.2_5'Flank|C14orf80_uc001yrk.2_5'Flank|C14orf80_uc001yrn.2_5'Flank|C14orf80_uc001yro.2_5'Flank|C14orf80_uc001yrm.2_5'Flank	NM_001311	NP_001302	P50238	CRIP1_HUMAN	cysteine-rich protein 1 (intestinal)	71					cell proliferation	cytoplasm	zinc ion binding				0		Melanoma(154;0.226)	OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0188)	Epithelial(152;0.235)		GCGGGGCGGAGCCGAGAGCCA	0.557													21	71					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106054664	106054664	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106054664G>A	uc010tyt.1	-	3650		c.62822C>T			uc001yrs.2_RNA|uc001yrt.2_Silent_p.V29V					Parts of antibodies, mostly variable regions.												0						GGCATGCGACGACCACGTTCC	0.637													20	46					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106091547	106091547	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106091547C>T	uc010tyt.1	-	3647		c.61961G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						TGATGGTCCCCCCAGGAACTC	0.627													26	54					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106091705	106091705	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106091705C>T	uc010tyt.1	-	3646		c.61921G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						CATGGGGGACCATATTTGGAC	0.592													60	140					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106109697	106109697	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106109697G>A	uc010tyt.1	-	3643		c.61457C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCCAGCATGGGAGGTGTGGT	0.587													72	187					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106110258	106110258	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106110258G>A	uc010tyt.1	-	3642		c.60993C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						GGGGGAAGAGGAAGACTGACG	0.622													23	78					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106173691	106173691	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106173691G>A	uc010tyt.1	-	3633		c.60207C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						TGGTCACAGCGAAGGTGGTGG	0.662													17	81					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106174793	106174793	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106174793C>T	uc010tyt.1	-	3631		c.59541G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron					Parts of antibodies, mostly variable regions.												0						CCGGCAGGGTCAGCTGGCTGC	0.637													13	54					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106207896	106207896	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106207896C>T	uc010tyt.1	-	3628		c.59221G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Missense_Mutation_p.G169R|uc001ysf.2_Missense_Mutation_p.G169R					Parts of antibodies, mostly variable regions.												0						AAGACGTTCCCCTGCTGCCAC	0.597													36	118					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106208133	106208133	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106208133C>T	uc010tyt.1	-	3628		c.58985_splice	c.e3628-1		uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Splice_Site_p.G90_splice|uc001ysf.2_Splice_Site_p.G90_splice					Parts of antibodies, mostly variable regions.												0						CGGGGCTGCCCTGTAGGGACA	0.642													59	178					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106208522	106208522	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106208522G>A	uc010tyt.1	-	3627		c.58692C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_5'UTR|uc001ysf.2_5'UTR					Parts of antibodies, mostly variable regions.												0						GTTTTGGGGGGAAGAGGAAGA	0.612													35	58					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106237723	106237723	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106237723C>T	uc010tyt.1	-	3611		c.57160G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						GGGGGAAGACCGATGGGCCCT	0.662													6	46					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106320527	106320527	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106320527G>A	uc010tyt.1	-	3601		c.56447C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CTTGTCCACGGTCCTCTCGGT	0.627													27	70					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106321130	106321130	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106321130C>T	uc010tyt.1	-	3600		c.56021G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						ATGCTGGCCTCACCCACGGCG	0.612													10	28					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106321778	106321778	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106321778C>T	uc010tyt.1	-	3599		c.55618G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CCACCTGCTTCCCCTCGCGCA	0.642													13	41					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106322213	106322213	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106322213G>A	uc010tyt.1	-	3598		c.55273C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						AGAAAGTGATGGAGTCGGGAA	0.597													5	21					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106329522	106329522	+	RNA	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106329522A>T	uc010tyt.1	-	3588		c.54396T>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_5'Flank|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_5'Flank|uc001ysk.1_5'Flank|uc001ysl.1_5'Flank|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CCACCCAGAGACCTTCTGTCT	0.567													30	42					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106330873	106330873	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106330873C>T	uc010tyt.1	-	3525		c.53599G>A			uc001yrs.2_5'Flank|uc001yrt.2_5'Flank|uc001yrw.1_5'Flank|uc001yrx.1_5'Flank|uc001yrz.1_5'Flank|uc001yse.2_5'Flank|uc001ysf.2_Intron|uc001ysj.2_5'Flank|uc001ysk.1_5'Flank|uc001ysl.1_5'Flank|uc001ysm.1_5'Flank|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CTGTTCCTGCCCAGACACAAA	0.587													5	18					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106349677	106349677	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106349677G>A	uc010tyt.1	-	3179		c.50149C>T								Parts of antibodies, mostly variable regions.												0						AGCCCCAGGAGAAGCAGGTGA	0.622													5	14					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106349795	106349795	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106349795C>T	uc010tyt.1	-	3175		c.50093G>A								Parts of antibodies, mostly variable regions.												0						GCCTGGCACCCCCTGACAATA	0.642													17	62					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106405642	106405642	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106405642G>A	uc010tyt.1	-	2358		c.42422C>T								Parts of antibodies, mostly variable regions.												0						CGTGTCCTCGGGAGTCACAGA	0.502													72	150					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106478215	106478215	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106478215G>A	uc010tyt.1	-	1857		c.36071C>T								Parts of antibodies, mostly variable regions.												0						GACTCTTGAGGGAGGGGTTGT	0.572													11	98					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106478263	106478263	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106478263C>T	uc010tyt.1	-	1857		c.36023G>A								Parts of antibodies, mostly variable regions.												0						GCCCAATCCACTCCAGTCCCT	0.577													13	59					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106494237	106494237	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106494237C>T	uc010tyt.1	-	1760		c.34761G>A								Parts of antibodies, mostly variable regions.												0						TGAGCCTGCTCTTCAGAGATG	0.532													15	96					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106518487	106518487	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106518487G>A	uc010tyt.1	-	1630		c.32950C>T								Parts of antibodies, mostly variable regions.												0						CTCTGGAGATGGTGAATCGGC	0.542													126	281					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106539304	106539304	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106539304C>T	uc010tyt.1	-	1519		c.31389G>A								Parts of antibodies, mostly variable regions.												0						ATCCAGAAGCCTTGCAGGAGA	0.562													75	40					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106610738	106610738	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106610738G>A	uc010tyt.1	-	1166		c.26196C>T								Parts of antibodies, mostly variable regions.												0						TTTTAAAATAGCAGCAAGGAA	0.448													43	158					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106631450	106631450	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106631450C>T	uc010tyt.1	-	1074		c.25054G>A								Parts of antibodies, mostly variable regions.												0						AGAAGAGGATCCCCCAGGTAC	0.552													20	51					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106641605	106641605	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106641605C>T	uc010tyt.1	-	1021		c.24396G>A								Parts of antibodies, mostly variable regions.												0						ATCTCAGGCTCCTCAGCTCCA	0.537													120	228					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106653437	106653437	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106653437C>T	uc010tyt.1	-	972		c.23495G>A								Parts of antibodies, mostly variable regions.												0						ACAGGAAGTTCCTGGAATTGT	0.522													37	177					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106692098	106692098	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106692098G>A	uc010tyt.1	-	753		c.20355C>T								Parts of antibodies, mostly variable regions.												0						TAGCAACAAGGAAAACCCAGC	0.483													60	167					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106692191	106692191	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106692191C>T	uc010tyt.1	-	753		c.20262G>A								Parts of antibodies, mostly variable regions.												0						GCTAAGGCTCCTCTCTCAGAG	0.527													23	71					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106714636	106714636	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106714636C>T	uc010tyt.1	-	645		c.18969G>A								Parts of antibodies, mostly variable regions.												0						TACCAAGCCTCCCCCAGACTC	0.567													47	105					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106725366	106725366	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106725366C>T	uc010tyt.1	-	588		c.18181G>A								Parts of antibodies, mostly variable regions.												0						ACTCCAGCCCCTTCCCTGGAG	0.577													51	490					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106725467	106725467	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106725467C>T	uc010tyt.1	-	588		c.18080G>A								Parts of antibodies, mostly variable regions.												0						TGTACCAAGCCTCCCCCAGAC	0.562													59	221					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106743843	106743843	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106743843G>A	uc010tyt.1	-	506		c.16842C>T								Parts of antibodies, mostly variable regions.												0						TGCCGGAGTAGAAGATGGGGC	0.597													19	36					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106757818	106757818	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106757818C>T	uc010tyt.1	-	472		c.16247G>A								Parts of antibodies, mostly variable regions.												0						CCAGGGCCTTCCCTGGGGGCT	0.537													27	58					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106774297	106774297	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106774297G>A	uc010tyt.1	-	429		c.15520C>T								Parts of antibodies, mostly variable regions.												0						AGCCTTGCAGGAAACCTTCAA	0.542													20	36					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106780570	106780570	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106780570G>A	uc010tyt.1	-	413		c.15292C>T								Parts of antibodies, mostly variable regions.												0						GCTTCAGGGAGAACTGGTTCT	0.537													91	280					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106791008	106791008	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106791008C>T	uc010tyt.1	-	386		c.14610G>A								Parts of antibodies, mostly variable regions.												0						CTGTGTCTCTCGCACAGTAAT	0.562													73	551					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106815979	106815979	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106815979G>A	uc010tyt.1	-	342		c.13180C>T								Parts of antibodies, mostly variable regions.												0						CTCCCAGGCTGGACCACGCCT	0.577													19	76					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106829885	106829885	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106829885G>A	uc010tyt.1	-	323		c.12620C>T			uc001ysx.1_RNA					Parts of antibodies, mostly variable regions.												0						GCTGCACCTGGGACAGGACCC	0.562													20	44					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106848871	106848871	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106848871C>T	uc010tyt.1	-	293		c.11978G>A								Parts of antibodies, mostly variable regions.												0						GGACCCAGCTCATCCAGTACC	0.498													24	14					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106848899	106848899	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106848899G>A	uc010tyt.1	-	292		c.11964C>T								Parts of antibodies, mostly variable regions.												0						GGTACTAAAGGTGAATCCAGA	0.507													11	29					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106926359	106926359	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106926359C>T	uc010tyt.1	-	235		c.10196G>A			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						CCAGACCCTTCCCCGGAGCTT	0.542													72	153					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106963149	106963149	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106963149C>T	uc010tyt.1	-	207		c.9535G>A								Parts of antibodies, mostly variable regions.												0						AAGGTGTATCCGGAAGCCTTG	0.572													53	101					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106967409	106967409	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:106967409C>T	uc010tyt.1	-	201		c.9032G>A								Parts of antibodies, mostly variable regions.												0						AAAATCCCTTCCTCAGCCCTG	0.557													23	69					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107013088	107013088	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107013088G>A	uc010tyt.1	-	169		c.7969C>T								Parts of antibodies, mostly variable regions.												0						TGCTTCTAATGAAACCTACCC	0.507													40	99					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107013108	107013108	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107013108C>T	uc010tyt.1	-	169		c.7949G>A								Parts of antibodies, mostly variable regions.												0						CACTCCAGCCCCTTCCCTGGA	0.522													25	110					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107013176	107013176	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107013176G>A	uc010tyt.1	-	169		c.7881C>T								Parts of antibodies, mostly variable regions.												0						AGCTGTACAGGAGAGTCTCAG	0.547													26	85					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107013381	107013381	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107013381C>T	uc010tyt.1	-	169		c.7676G>A								Parts of antibodies, mostly variable regions.												0						GAAAACCCAGCTAAGCCCAAA	0.493													36	200					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107034732	107034732	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107034732C>T	uc010tyt.1	-	154		c.7501G>A			uc001ysz.2_Silent_p.A116A					Parts of antibodies, mostly variable regions.												0						CTGTGTGTCTCGCACAGTAAT	0.597													17	160					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107034953	107034953	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107034953C>T	uc010tyt.1	-	154		c.7280G>A			uc001ysz.2_Missense_Mutation_p.G43S					Parts of antibodies, mostly variable regions.												0						TATCCAGAACCCTTACAGGAG	0.567													10	30					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107048762	107048762	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107048762G>A	uc010tyt.1	-	144		c.6828C>T								Parts of antibodies, mostly variable regions.												0						TGGAGATGGTGAATCGGCCCT	0.542													52	393					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107048774	107048774	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107048774C>T	uc010tyt.1	-	144		c.6816G>A								Parts of antibodies, mostly variable regions.												0						ATCGGCCCTTCACGGAGTCTG	0.537													61	412					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107062171	107062171	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107062171C>T	uc010tyt.1	-	131		c.6424G>A								Parts of antibodies, mostly variable regions.												0						GGTCACAGAGCTCAGCTTCAG	0.542													51	168					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107062173	107062173	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107062173C>T	uc010tyt.1	-	131		c.6422G>A								Parts of antibodies, mostly variable regions.												0						TCACAGAGCTCAGCTTCAGGT	0.547													49	163					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107066183	107066183	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107066183G>A	uc010tyt.1	-	127		c.6018C>T								Parts of antibodies, mostly variable regions.												0						CCACCAAGAAGAGGATGCTCC	0.572													7	43					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107078517	107078517	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107078517C>T	uc010tyt.1	-	117		c.5773G>A								Parts of antibodies, mostly variable regions.												0						CAACGACGATCCATCCTATCC	0.522													17	106					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107083553	107083553	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107083553G>A	uc010tyt.1	-	113		c.5240C>T								Parts of antibodies, mostly variable regions.												0						CCTGGGACAGGACCCCTGTGA	0.602													15	46					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107083658	107083658	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107083658G>A	uc010tyt.1	-	112		c.5216C>T								Parts of antibodies, mostly variable regions.												0						GCTGCCACCAGGAGAAGGAAG	0.507													18	71					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107131123	107131123	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107131123G>A	uc010tyt.1	-	63		c.3387C>T								Parts of antibodies, mostly variable regions.												0						TGGAGATGGTGAATCGGCCCT	0.527													24	201					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107131135	107131135	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107131135C>T	uc010tyt.1	-	63		c.3375G>A								Parts of antibodies, mostly variable regions.												0						ATCGGCCCTTCACGGAGTCTG	0.522													15	165					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107211030	107211030	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107211030C>T	uc010tyt.1	-	18		c.1311G>A								Parts of antibodies, mostly variable regions.												0						GTGAACCTGCCTTTCACCGAC	0.527													40	123					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107218706	107218706	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:107218706G>A	uc010tyt.1	-	12		c.1008C>T								Parts of antibodies, mostly variable regions.												0						CCGTGTCCTCGGCTCTCAGAC	0.552													129	295					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20488791	20488791	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:20488791C>T	uc001ytf.1	+	2		c.274C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGAGACCTCTCTCATGAGAAC	0.413													21	113					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20488815	20488815	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:20488815C>T	uc001ytf.1	+	2		c.298C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		ATGTGGAACCCCCACCTGCTT	0.428													17	132					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20490535	20490535	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:20490535G>A	uc001ytf.1	+	4		c.515G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGTTGGTAGTGGATCCAAAGG	0.428													37	264					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20490544	20490544	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:20490544G>A	uc001ytf.1	+	4		c.524G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGGATCCAAAGGCATGTTTTA	0.438													14	305					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20495414	20495414	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:20495414G>A	uc001ytf.1	+	5		c.617G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGAGGAAAATGAATCCACAGC	0.393													14	71					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20588639	20588639	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:20588639C>T	uc001ytg.2	-	27	4131	c.3422G>A	c.(3421-3423)AGA>AAA	p.R1141K	uc010tyx.1_RNA					RecName: Full=Putative HERC2-like protein 3;																		GTTCATTCTTCTTATAAATAA	0.413													21	56					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20649564	20649564	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:20649564C>T	uc001ytg.2	-	18	2654	c.1945G>A	c.(1945-1947)GAA>AAA	p.E649K	uc010tyx.1_RNA|uc001yth.3_Missense_Mutation_p.E649K|uc010tyy.1_Missense_Mutation_p.E649K					RecName: Full=Putative HERC2-like protein 3;																		TAATTTCCTTCTTTCCCCATC	0.587													56	141					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20651245	20651245	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:20651245G>A	uc001ytg.2	-	17	2412	c.1703C>T	c.(1702-1704)TCT>TTT	p.S568F	uc010tyx.1_RNA|uc001yth.3_Missense_Mutation_p.S568F|uc010tyy.1_Missense_Mutation_p.S568F					RecName: Full=Putative HERC2-like protein 3;																		AACTGTGGCAGAAGCACCTTG	0.502													18	44					0	0	1	0	0
GOLGA8C	729786	broad.mit.edu	37	15	20778028	20778028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:20778028C>T	uc010tzc.1	+	18	2284	c.1269C>T	c.(1267-1269)TTC>TTT	p.F423F	uc001ytq.2_5'Flank	NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E											skin(1)	1						GTGTGCCATTCTTTTGCTGGG	0.507													57	54					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21937111	21937111	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:21937111C>T	uc010tzj.1	-	1		c.3629G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						ATCTGTGCTTCATCCATGCAG	0.448													43	214					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21937566	21937566	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:21937566C>T	uc010tzj.1	-	1		c.3174G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						AAATTGATTTCATATGATCCG	0.473													23	122					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21937598	21937598	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:21937598G>A	uc010tzj.1	-	1		c.3142C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						ATAATGGGAGGGGCAGTCTCT	0.498													10	114					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21937623	21937623	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:21937623C>T	uc010tzj.1	-	1		c.3117G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CATCGTCCTCCTCCTCTGTCA	0.498													16	117					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21937626	21937626	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:21937626C>T	uc010tzj.1	-	1		c.3114G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CGTCCTCCTCCTCTGTCACTA	0.493													18	113					0	0	1	0	0
POTEB	339010	broad.mit.edu	37	15	22062320	22062320	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22062320G>A	uc010tzr.1	-	12	1772	c.1405C>T	c.(1405-1407)CAC>TAC	p.H469Y	POTEB_uc010tzq.1_RNA	NM_207355	NP_997238	Q6S5H4	POTEB_HUMAN	protein expressed in prostate, ovary, testis,	469											0						GCTCACCTGTGATACTCTTCA	0.373													36	32					0	0	1	0	0
NF1P1	440225	broad.mit.edu	37	15	22143278	22143278	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22143278C>T	uc010tzs.1	-	3		c.309G>A								Human NF1-related locus DNA in A9 mouse DNA background.												0						GCCAGTTCATCCTGAGAACAA	0.383													7	56					0	0	1	0	0
OR4M2	390538	broad.mit.edu	37	15	22369068	22369068	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22369068C>T	uc010tzu.1	+	1	493	c.493C>T	c.(493-495)CGA>TGA	p.R165*	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCTCATTGTTCGACTTCCTTT	0.498													42	205					0	0	1	0	0
OR4M2	390538	broad.mit.edu	37	15	22369238	22369238	+	Silent	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22369238T>G	uc010tzu.1	+	1	663	c.663T>G	c.(661-663)CTT>CTG	p.L221L	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATGCCTTCCTTCTGGCCTTGT	0.478													52	125					0	0	1	0	0
OR4M2	390538	broad.mit.edu	37	15	22369418	22369418	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22369418C>T	uc010tzu.1	+	1	843	c.843C>T	c.(841-843)TTC>TTT	p.F281F	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CTTTAATATTCCCTTTACGTA	0.378													6	77					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22382613	22382613	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22382613C>T	uc001yuc.1	+	7	1122	c.141C>T	c.(139-141)TTC>TTT	p.F47F	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.F47F	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCATTATTTTCACCATAAGGT	0.458													78	231					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22382676	22382676	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22382676C>T	uc001yuc.1	+	7	1185	c.204C>T	c.(202-204)TTC>TTT	p.F68F	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.F68F	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ACTTGGCCTTCCTGGATGCAT	0.483													29	284					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22382697	22382697	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22382697C>T	uc001yuc.1	+	7	1206	c.225C>T	c.(223-225)TTC>TTT	p.F75F	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.F75F	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CCTACTCCTTCATTGTGGCTC	0.478													56	233					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22383057	22383057	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22383057G>A	uc001yuc.1	+	7	1566	c.585G>A	c.(583-585)GTG>GTA	p.V195V	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.V195V	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGTTTGTGGTGGAGCTTCTAA	0.527													15	66					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22383132	22383132	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22383132C>T	uc001yuc.1	+	7	1641	c.660C>T	c.(658-660)GTC>GTT	p.V220V	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.V220V	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CCTATGCAGTCATCCTCTGCC	0.502													27	81					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22383180	22383180	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22383180C>T	uc001yuc.1	+	7	1689	c.708C>T	c.(706-708)GCC>GCT	p.A236A	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.A236A	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	236	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		AGAACAAGGCCATGTCCACGT	0.502													33	93					0	0	1	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413973	22413973	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22413973C>T	uc001yuf.2	+	1	272	c.272C>T	c.(271-273)CCA>CTA	p.P91L		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TTTTGTGGCCCAAACCAGCTG	0.512													20	114					0	0	1	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414032	22414032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22414032G>A	uc001yuf.2	+	1	331	c.331G>A	c.(331-333)GAC>AAC	p.D111N		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GGCTTGCACCGACATGTTTGT	0.507													33	92					0	0	1	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414247	22414247	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22414247C>T	uc001yuf.2	+	1	546	c.546C>T	c.(544-546)TTC>TTT	p.F182F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CGTGCCCCTTCAGGGCTTTCC	0.453													40	104					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	22440573	22440573	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22440573G>A	uc001yug.2	-	1	293	c.274C>T	c.(274-276)CGT>TGT	p.R92C						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTCTTGGGACGAACCAGCTCG	0.507													15	33					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	22473014	22473014	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22473014C>T	uc001yuj.1	-	2		c.257G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		TATGGTGACTCGACTCTTGAG	0.577													40	375					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	22473075	22473075	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22473075C>T	uc001yuj.1	-	2		c.196G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		CCAATCCACTCCAGCCCCTTC	0.572													26	233					0	0	1	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22846939	22846939	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22846939C>T	uc001yur.3	+	8	944	c.814C>T	c.(814-816)CGG>TGG	p.R272W	TUBGCP5_uc001yuq.2_Missense_Mutation_p.R272W|TUBGCP5_uc010axz.1_5'Flank	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	272					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		TCAGGTTATTCGGGAAACCCT	0.353													17	72					0	0	1	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22855192	22855192	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22855192C>T	uc001yur.3	+	13	1783	c.1653C>T	c.(1651-1653)TTC>TTT	p.F551F	TUBGCP5_uc001yuq.2_Silent_p.F551F|TUBGCP5_uc010axz.1_Silent_p.F138F	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	551					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		TGGTGTCCTTCCTCAAACCTG	0.542													18	61					0	0	1	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22872489	22872489	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22872489C>T	uc001yur.3	+	22	3148	c.3018C>T	c.(3016-3018)TCC>TCT	p.S1006S	TUBGCP5_uc001yuq.2_Silent_p.S1006S	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	1006					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		GTAGAGGATCCTTTCCCCATT	0.323													26	115					0	0	1	0	0
CYFIP1	23191	broad.mit.edu	37	15	22945069	22945069	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:22945069C>T	uc001yus.2	+	12	1244	c.1140C>T	c.(1138-1140)GCC>GCT	p.A380A	CYFIP1_uc001yut.2_Silent_p.A380A|CYFIP1_uc010aya.1_Silent_p.A408A	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	380					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		GCCAGGAGGCCCAGAAGACGG	0.701													3	5					0	0	1	0	0
NIPA1	123606	broad.mit.edu	37	15	23049282	23049282	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23049282G>A	uc001yvc.2	-	5	562	c.537C>T	c.(535-537)ATC>ATT	p.I179I	NIPA1_uc001yvd.2_Silent_p.I9I|NIPA1_uc001yve.2_Silent_p.I104I	NM_144599	NP_653200	Q7RTP0	NIPA1_HUMAN	non-imprinted in Prader-Willi/Angelman syndrome	179	Helical; (Potential).				cell death	early endosome|integral to membrane|plasma membrane					0		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;4.18e-06)|Epithelial(43;3.97e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00165)		GGGCCGGCGCGATCCAGAAGA	0.607													5	23					0	0	1	0	0
GOLGA9P	283796	broad.mit.edu	37	15	23261824	23261824	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23261824G>A	uc001yvh.1	+	11	1235	c.693G>A	c.(691-693)AGG>AGA	p.R231R	uc001yvl.2_5'Flank	NR_024074				RecName: Full=Putative golgin subfamily A member 6-like protein 11;												0						AGCACCTGAGGAAGGAACTAG	0.577													18	92					0	0	1	0	0
GOLGA9P	283796	broad.mit.edu	37	15	23262319	23262319	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23262319G>A	uc001yvh.1	+	12	1475	c.933G>A	c.(931-933)AAG>AAA	p.K311K	uc001yvl.2_5'Flank|uc001yvm.2_5'Flank	NR_024074				RecName: Full=Putative golgin subfamily A member 6-like protein 11;												0						AGCAAGTAAAGGAGCTACAGG	0.577													10	36					0	0	1	0	0
HERC2P2	400322	broad.mit.edu	37	15	23299694	23299694	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23299694G>A	uc001yvq.2	-	5		c.1714C>T			HERC2P2_uc001yvo.3_RNA|HERC2P2_uc001yvp.3_RNA					Homo sapiens mRNA for KIAA0393 protein, partial cds.												0						GGAGTAGGCGGCATCATCCAT	0.592													8	44					0	0	1	0	0
GOLGA8E	390535	broad.mit.edu	37	15	23444016	23444016	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23444016G>A	uc001yvu.2	+	14	1660	c.671G>A	c.(670-672)GGA>GAA	p.G224E		NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E											skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;5.21e-07)|Epithelial(43;5.65e-06)|BRCA - Breast invasive adenocarcinoma(123;0.000614)		GGACACGGAGGAGAACATCTG	0.617													10	65					0	0	1	0	0
MKRN3	7681	broad.mit.edu	37	15	23811088	23811088	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23811088G>A	uc001ywh.3	+	1	635	c.159G>A	c.(157-159)AGG>AGA	p.R53R	MKRN3_uc001ywi.2_Silent_p.R53R|MKRN3_uc010ayi.1_Silent_p.R53R	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	53						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		ATGCGGCAAGGGGCTGGGCCC	0.687													13	55					0	0	1	0	0
MKRN3	7681	broad.mit.edu	37	15	23811137	23811137	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23811137G>A	uc001ywh.3	+	1	684	c.208G>A	c.(208-210)GGA>AGA	p.G70R	MKRN3_uc001ywi.2_Missense_Mutation_p.G70R|MKRN3_uc010ayi.1_Missense_Mutation_p.G70R	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	70						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		CCTCCGCAGAGGAGGCCTGAG	0.657													4	51					0	0	1	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890533	23890533	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23890533G>C	uc001ywj.3	-	1	643	c.548C>G	c.(547-549)TCC>TGC	p.S183C		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		GACACTTGAGGAGGGAGCAAA	0.587													5	56					0	0	1	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890849	23890849	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23890849G>A	uc001ywj.3	-	1	327	c.232C>T	c.(232-234)CCG>TCG	p.P78S		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		GGCTGGAGCGGCAGTGTGGGC	0.667													3	15					0	0	1	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890862	23890862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23890862C>T	uc001ywj.3	-	1	314	c.219G>A	c.(217-219)GAG>GAA	p.E73E		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		GTGTGGGCACCTCCGCTTGCG	0.682													4	11					0	0	1	0	0
NDN	4692	broad.mit.edu	37	15	23931438	23931438	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:23931438G>A	uc001ywk.2	-	1	1013	c.927C>T	c.(925-927)CCC>CCT	p.P309P		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	309					negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		AGTGGGCAGTGGGATTAGCCT	0.597									Prader-Willi_syndrome				23	56					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921209	24921209	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24921209C>T	uc001ywo.2	+	1	669	c.195C>T	c.(193-195)TTC>TTT	p.F65F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	65					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCAGCATCTTCGTCGCCCCTA	0.721													11	35					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921215	24921215	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24921215C>T	uc001ywo.2	+	1	675	c.201C>T	c.(199-201)GCC>GCT	p.A67A		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	67					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TCTTCGTCGCCCCTAAGAGGC	0.716													8	35					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921236	24921236	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24921236C>T	uc001ywo.2	+	1	696	c.222C>T	c.(220-222)CTC>CTT	p.L74L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	74					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CGTGTCCTCTCCCTCGGGCTG	0.711													15	38					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921362	24921362	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24921362C>T	uc001ywo.2	+	1	822	c.348C>T	c.(346-348)ATC>ATT	p.I116I		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	116					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCGTAAGGATCCCTCCTCCCA	0.657													28	57					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921425	24921425	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24921425C>T	uc001ywo.2	+	1	885	c.411C>T	c.(409-411)GCC>GCT	p.A137A		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	137					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CGGTCAAGGCCAGGAAGCCCA	0.622													17	53					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921487	24921487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24921487G>A	uc001ywo.2	+	1	947	c.473G>A	c.(472-474)AGA>AAA	p.R158K		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	158					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GAAGGGCCCAGAAGAGTGAAG	0.617													12	37					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921522	24921522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24921522G>A	uc001ywo.2	+	1	982	c.508G>A	c.(508-510)GAA>AAA	p.E170K		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	170					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GGTGCAGATCGAAGGGGAGGA	0.617													15	33					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921933	24921933	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24921933C>T	uc001ywo.2	+	1	1393	c.919C>T	c.(919-921)CCT>TCT	p.P307S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	307	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGATGAGAAGCCTTTCTGTAT	0.587													25	78					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922012	24922012	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24922012C>T	uc001ywo.2	+	1	1472	c.998C>T	c.(997-999)CCA>CTA	p.P333L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	333	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ATGTCGATTCCATTGCTGCTG	0.577													25	37					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922292	24922292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24922292C>T	uc001ywo.2	+	1	1752	c.1278C>T	c.(1276-1278)ATC>ATT	p.I426I		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	426	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTTTGCCCATCCCTGACTTGG	0.547													28	85					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922361	24922361	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24922361A>G	uc001ywo.2	+	1	1821	c.1347A>G	c.(1345-1347)AAA>AAG	p.K449K		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	449	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCACACCAAAAATGGATGAGA	0.507													55	113					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922597	24922597	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24922597C>T	uc001ywo.2	+	1	2057	c.1583C>T	c.(1582-1584)TCC>TTC	p.S528F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	528	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTCCTCTTTCCTTCCTGACT	0.532													81	213					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922679	24922679	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24922679C>T	uc001ywo.2	+	1	2139	c.1665C>T	c.(1663-1665)TCC>TCT	p.S555S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	555					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CAGTCATTTCCACTGTCACAA	0.488													40	139					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922731	24922731	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24922731C>T	uc001ywo.2	+	1	2191	c.1717C>T	c.(1717-1719)CCT>TCT	p.P573S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	573					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGCGGTAGACCCTGAAGTAGT	0.463													39	87					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922862	24922862	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24922862G>A	uc001ywo.2	+	1	2322	c.1848G>A	c.(1846-1848)AAG>AAA	p.K616K		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	616					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ACCCGGGAAAGACATCAGTCT	0.458													39	75					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922879	24922879	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24922879C>T	uc001ywo.2	+	1	2339	c.1865C>T	c.(1864-1866)TCC>TTC	p.S622F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	622					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GTCTACACATCCCCACTTCCA	0.483													40	80					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922993	24922993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24922993C>T	uc001ywo.2	+	1	2453	c.1979C>T	c.(1978-1980)TCT>TTT	p.S660F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	660					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CAGAAAGCTTCTCTCCCCAGT	0.498													22	160					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24923060	24923060	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24923060G>A	uc001ywo.2	+	1	2520	c.2046G>A	c.(2044-2046)GTG>GTA	p.V682V		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	682					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCACTTTAGTGAACAGTGCCT	0.522													67	187					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24923706	24923706	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24923706C>T	uc001ywo.2	+	1	3166	c.2692C>T	c.(2692-2694)CAT>TAT	p.H898Y		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	898					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ATCCATCTCTCATTCCACACT	0.502													52	149					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24923865	24923865	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24923865C>T	uc001ywo.2	+	1	3325	c.2851C>T	c.(2851-2853)CCA>TCA	p.P951S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	951					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GTTAACATCACCATATACTGC	0.478													24	65					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24924372	24924372	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:24924372C>T	uc001ywo.2	+	1	3832	c.3358C>T	c.(3358-3360)CAA>TAA	p.Q1120*		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1120					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TCCTGCTTTTCAACAGTGCAT	0.468													75	115					0	0	1	0	0
SNRPN	6638	broad.mit.edu	37	15	25220525	25220525	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:25220525G>A	uc001ywp.1	+	8	914	c.24G>A	c.(22-24)AAG>AAA	p.K8K	SNRPN_uc001ywq.1_Silent_p.K8K|SNRPN_uc001ywr.1_Silent_p.K8K|SNRPN_uc001yws.1_Silent_p.K8K|SNRPN_uc001ywt.1_Silent_p.K8K|SNRPN_uc001ywv.1_Silent_p.K11K|SNRPN_uc001yww.1_Silent_p.K8K|SNRPN_uc001ywx.1_Silent_p.K8K|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	8					RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		AGAGTAGCAAGATGCTGCAGC	0.433									Prader-Willi_syndrome				29	96					0	0	1	0	0
SNRPN	6638	broad.mit.edu	37	15	25223432	25223432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:25223432C>T	uc001ywp.1	+	12	1542	c.652C>T	c.(652-654)CCG>TCG	p.P218S	SNRPN_uc001ywq.1_Missense_Mutation_p.P218S|SNRPN_uc001ywr.1_Missense_Mutation_p.P218S|SNRPN_uc001yws.1_Missense_Mutation_p.P218S|SNRPN_uc001ywt.1_Missense_Mutation_p.P218S|SNRPN_uc001ywv.1_Missense_Mutation_p.P221S|SNRPN_uc001yww.1_Missense_Mutation_p.P218S|SNRPN_uc001ywx.1_Missense_Mutation_p.P218S|SNRPN_uc001ywz.1_RNA|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	218	Repeat-rich region.|				RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		CATGCCGCCTCCGGGAATGAG	0.572									Prader-Willi_syndrome				47	150					0	0	1	0	0
SNORD109B	338429	broad.mit.edu	37	15	25287187	25287187	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:25287187C>T	uc001yxf.1	+	1		c.67C>T				NR_001295				Homo sapiens small nucleolar RNA, C/D box 109B (SNORD109B), non-coding RNA.												0						ATCTGAGGTCCAGATGTGTGG	0.468													6	22					0	0	1	0	0
SNORD116-1	100033413	broad.mit.edu	37	15	25296628	25296628	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:25296628C>T	uc001yxg.2	+	1		c.6C>T				NR_003316				Homo sapiens small nucleolar RNA, C/D box 116-1 (SNORD116-1), non-coding RNA.												0						GTGCTTGGATCGATGATGAGT	0.473													53	126					0	0	1	0	0
IPW	3653	broad.mit.edu	37	15	25419959	25419959	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:25419959G>A	uc001yyp.1	+	7		c.574_splice	c.e7-1		IPW_uc010aym.1_Splice_Site|uc001yys.1_Splice_Site|SNORD115-3_uc001yyt.1_5'Flank|SNORD115-4_uc001yyu.1_5'Flank					Homo sapiens clone kid12 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						ggcttcagcaggtccctccgt	0.189													26	59					0	0	1	0	0
UBE3A	7337	broad.mit.edu	37	15	25585324	25585324	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:25585324G>A	uc001zaq.2	-	10	2415	c.2415C>T	c.(2413-2415)TTC>TTT	p.F805F	uc001zae.2_Intron|UBE3A_uc001zar.2_Silent_p.F782F|UBE3A_uc001zas.2_Silent_p.F802F|UBE3A_uc001zat.2_Silent_p.F782F	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	805	HECT.				brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		TAAACTGCAAGAAGAGTCTTT	0.393													24	98					0	0	1	0	0
UBE3A	7337	broad.mit.edu	37	15	25585356	25585356	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:25585356G>A	uc001zaq.2	-	10	2383	c.2383C>T	c.(2383-2385)CAT>TAT	p.H795Y	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.H772Y|UBE3A_uc001zas.2_Missense_Mutation_p.H792Y|UBE3A_uc001zat.2_Missense_Mutation_p.H772Y	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	795	HECT.				brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		GTAAATGAATGAACGATTTCC	0.368													30	86					0	0	1	0	0
ATP10A	57194	broad.mit.edu	37	15	25959211	25959211	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:25959211G>A	uc010ayu.2	-	10	2060	c.1954C>T	c.(1954-1956)CTC>TTC	p.L652F		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	652	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		TCCAGCCTGAGAAGCATGCCG	0.672													14	46					0	0	1	0	0
ATP10A	57194	broad.mit.edu	37	15	25961910	25961910	+	Silent	SNP	G	A	A	rs139636096		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:25961910G>A	uc010ayu.2	-	9	1849	c.1743C>T	c.(1741-1743)GTC>GTT	p.V581V		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	581	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		ACGTGACGACGACTGTGTTGC	0.587													13	150					0	0	1	0	0
GABRB3	2562	broad.mit.edu	37	15	26825473	26825473	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:26825473G>A	uc001zaz.2	-	6	817	c.675C>T	c.(673-675)TTC>TTT	p.F225F	GABRB3_uc010uae.1_Silent_p.F140F|GABRB3_uc001zba.2_Silent_p.F225F|GABRB3_uc001zbb.2_Silent_p.F281F	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	225	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CACCTGTGGCGAAGACAACAT	0.572													31	63					0	0	1	0	0
GABRB3	2562	broad.mit.edu	37	15	26825586	26825586	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:26825586C>T	uc001zaz.2	-	6	704	c.562G>A	c.(562-564)GAC>AAC	p.D188N	GABRB3_uc010uae.1_Missense_Mutation_p.D103N|GABRB3_uc001zba.2_Missense_Mutation_p.D188N|GABRB3_uc001zbb.2_Missense_Mutation_p.D244N	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	188	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AACTCAATGTCATCCGTGGTG	0.507													30	80					0	0	1	0	0
GABRB3	2562	broad.mit.edu	37	15	26866495	26866495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:26866495G>A	uc001zaz.2	-	4	569	c.427C>T	c.(427-429)CTT>TTT	p.L143F	GABRB3_uc010uae.1_Missense_Mutation_p.L58F|GABRB3_uc001zba.2_Missense_Mutation_p.L143F|GABRB3_uc001zbb.2_Missense_Mutation_p.L199F|GABRB3_uc001zbc.2_RNA	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	143	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TCAGGGTGAAGACGGATCATG	0.478													34	105					0	0	1	0	0
GABRA5	2558	broad.mit.edu	37	15	27128577	27128577	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:27128577C>T	uc001zbd.1	+	7	709	c.370C>T	c.(370-372)CTT>TTT	p.L124F	GABRB3_uc001zbb.2_Intron	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	124	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CAACAACCTCCTTGCCAGCAA	0.547													23	80					0	0	1	0	0
GABRG3	2567	broad.mit.edu	37	15	27571983	27571983	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:27571983C>T	uc001zbg.1	+	4	464	c.298C>T	c.(298-300)CAG>TAG	p.Q100*	GABRG3_uc001zbf.2_Nonsense_Mutation_p.Q100*	NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	100	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		ATTTTTTGCTCAGACCTGGAC	0.388													46	92					0	0	1	0	0
OCA2	4948	broad.mit.edu	37	15	28116381	28116381	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28116381G>A	uc001zbh.3	-	21	2273	c.2163C>T	c.(2161-2163)CTC>CTT	p.L721L	OCA2_uc010ayv.2_Silent_p.L697L	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	721	Helical; (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		TGGCGGCTATGAGGCGCTGCT	0.577									Oculocutaneous_Albinism				19	51					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28362215	28362215	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28362215G>A	uc001zbj.2	-	87	13464	c.13358C>T	c.(13357-13359)TCG>TTG	p.S4453L	HERC2_uc001zbi.2_Missense_Mutation_p.S142L	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4453					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GGGACCAAACGAGCTCATCTT	0.592													5	40					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28436193	28436193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28436193G>A	uc001zbj.2	-	55	8673	c.8567C>T	c.(8566-8568)TCC>TTC	p.S2856F	HERC2_uc001zbk.1_Missense_Mutation_p.S391F	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2856	DOC.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GTTATTCAGGGAATTTCCACC	0.368													11	45					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28441679	28441679	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28441679A>T	uc001zbj.2	-	51	8154	c.8048T>A	c.(8047-8049)TTT>TAT	p.F2683Y	HERC2_uc001zbk.1_Missense_Mutation_p.F218Y	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2683					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTGCTGGGGAAAGTCGACAAT	0.413													13	83					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28465784	28465784	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28465784G>A	uc001zbj.2	-	37	5765	c.5659C>T	c.(5659-5661)CCT>TCT	p.P1887S		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1887	MIB/HERC2.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CCTGGAGGAGGCCCATCCTGA	0.582													34	90					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28467325	28467325	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28467325G>A	uc001zbj.2	-	36	5607	c.5501C>T	c.(5500-5502)GCT>GTT	p.A1834V		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1834					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TTGAGCAGAAGCATTCATATC	0.493													16	57					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28474625	28474625	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28474625G>A	uc001zbj.2	-	33	5207	c.5101C>T	c.(5101-5103)CCT>TCT	p.P1701S		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1701					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ATTCCCTCAGGAATAAGTCTT	0.383													45	106					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28478684	28478684	+	Missense_Mutation	SNP	G	A	A	rs143710331		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28478684G>A	uc001zbj.2	-	29	4481	c.4375C>T	c.(4375-4377)CAT>TAT	p.H1459Y		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1459					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GCACCTGCATGAACTAAAGAT	0.418													35	103					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28478849	28478849	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28478849G>A	uc001zbj.2	-	28	4418	c.4312C>T	c.(4312-4314)CGC>TGC	p.R1438C		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1438					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AACAACAAGCGACCGACCTCT	0.463													29	67					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28501425	28501425	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28501425G>A	uc001zbj.2	-	18	2662	c.2556C>T	c.(2554-2556)TTC>TTT	p.F852F	HERC2_uc001zbl.1_Silent_p.F547F	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	852					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTAAACCAAGGAATTCCGGGT	0.517													9	12					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28519449	28519449	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28519449G>A	uc001zbj.2	-	7	894	c.788C>T	c.(787-789)TCC>TTC	p.S263F	HERC2_uc001zbl.1_5'UTR	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	263					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CGTCACGACGGACCTGAGGAA	0.592													14	28					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	28600112	28600112	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28600112C>T	uc010uaf.1	-	3	236	c.218G>A	c.(217-219)AGG>AAG	p.R73K						SubName: Full=Putative uncharacterized protein ENSP00000383535; Flags: Fragment;																		CTCTAGCTCCCTCCTTAGGGC	0.507													8	60					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	28857226	28857226	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28857226C>T	uc010ual.1	+	1		c.20C>T								DQ584039																		AAGAGATGGGCTCTGTGGTCT	0.418													22	20					0	0	1	0	0
WHAMML2	440253	broad.mit.edu	37	15	28986388	28986388	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:28986388G>A	uc010azf.2	+	2		c.736G>A			WHAMML2_uc010uap.1_RNA|WHAMML2_uc010azg.1_RNA|WHAMML2_uc010azh.1_RNA|WHAMML2_uc001zci.1_RNA					Homo sapiens WAS protein homology region 2 domain containing 1-like 2, mRNA (cDNA clone IMAGE:5261987).												0						GCCATTTAGGGCTATGCGAGA	0.328													6	17					0	0	1	0	0
APBA2	321	broad.mit.edu	37	15	29346369	29346369	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:29346369G>C	uc001zck.2	+	3	489	c.282G>C	c.(280-282)GAG>GAC	p.E94D	APBA2_uc010azj.2_Missense_Mutation_p.E94D|APBA2_uc010uat.1_Missense_Mutation_p.E94D|APBA2_uc001zcl.2_Missense_Mutation_p.E94D|APBA2_uc010uas.1_Missense_Mutation_p.E94D	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	94	Poly-Glu.				nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		CTGAGGAGGAGGAGGGCATCA	0.607													24	124					0	0	1	0	0
APBA2	321	broad.mit.edu	37	15	29390737	29390737	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:29390737C>T	uc001zck.2	+	8	1503	c.1296C>T	c.(1294-1296)TTC>TTT	p.F432F	APBA2_uc010azj.2_Silent_p.F420F|APBA2_uc010uat.1_Silent_p.F420F|APBA2_uc001zcl.2_Silent_p.F420F|APBA2_uc001zcm.1_Silent_p.F124F	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	432	PID.				nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		TGGACCTCTTCATTTCCACCC	0.423													19	62					0	0	1	0	0
APBA2	321	broad.mit.edu	37	15	29398864	29398864	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:29398864G>A	uc001zck.2	+	11	1966	c.1759G>A	c.(1759-1761)GGC>AGC	p.G587S	APBA2_uc010azj.2_Missense_Mutation_p.G575S|APBA2_uc010uat.1_Missense_Mutation_p.G575S|APBA2_uc001zcl.2_Missense_Mutation_p.G575S	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	587	PDZ 1.				nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		GGTGGAGTCGGGCTGGGGCTC	0.652													6	75					0	0	1	0	0
TJP1	7082	broad.mit.edu	37	15	30024717	30024717	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:30024717G>A	uc001zcr.2	-	15	2412	c.1937C>T	c.(1936-1938)CCT>CTT	p.P646L	TJP1_uc010azl.2_Missense_Mutation_p.P634L|TJP1_uc001zcq.2_Missense_Mutation_p.P650L|TJP1_uc001zcs.2_Missense_Mutation_p.P646L	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	646	Guanylate kinase-like.				cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		AATGGTTACAGGCCTCAGAAA	0.368													19	83					0	0	1	0	0
TJP1	7082	broad.mit.edu	37	15	30024934	30024934	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:30024934G>A	uc001zcr.2	-	14	2297	c.1822C>T	c.(1822-1824)CGC>TGC	p.R608C	TJP1_uc010azl.2_Missense_Mutation_p.R596C|TJP1_uc001zcq.2_Missense_Mutation_p.R612C|TJP1_uc001zcs.2_Missense_Mutation_p.R608C	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	608	Guanylate kinase-like.				cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		TTGGAGCTGCGAAGACCTCTG	0.473													16	65					0	0	1	0	0
TJP1	7082	broad.mit.edu	37	15	30026560	30026560	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:30026560G>A	uc001zcr.2	-	12	1909	c.1434C>T	c.(1432-1434)ATC>ATT	p.I478I	TJP1_uc010azl.2_Silent_p.I466I|TJP1_uc001zcq.2_Silent_p.I482I|TJP1_uc001zcs.2_Silent_p.I478I	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	478	PDZ 3.				cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		CTTCTCTTATGATATTTGTAA	0.363													29	77					0	0	1	0	0
MTMR15	22909	broad.mit.edu	37	15	31206141	31206141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:31206141C>T	uc001zff.2	+	5	1949	c.1658C>T	c.(1657-1659)TCG>TTG	p.S553L	MTMR15_uc001zfe.2_Missense_Mutation_p.S158L	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	553					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		CTACTGTTTTCGTTGACCGAC	0.502								Direct_reversal_of_damage|Editing_and_processing_nucleases					14	73					0	0	1	0	0
TRPM1	4308	broad.mit.edu	37	15	31294508	31294509	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:31294508_31294509GG>AA	uc001zfm.2	-	27	4456_4457	c.4328_4329CC>TT	c.(4327-4329)TCC>TTT	p.S1443F	TRPM1_uc010azy.2_Missense_Mutation_p.S1350F|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1443	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		TTCTTCCCCGGGAATAGACGAA	0.45													46	86					0	0	1	0	0
TRPM1	4308	broad.mit.edu	37	15	31323334	31323334	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:31323334G>A	uc001zfm.2	-	22	3041	c.2913C>T	c.(2911-2913)GTC>GTT	p.V971V	TRPM1_uc010azy.2_Silent_p.V878V|TRPM1_uc001zfl.2_Intron	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	971	Helical; (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CCAGCATGATGACCACAAAGT	0.493													34	78					0	0	1	0	0
TRPM1	4308	broad.mit.edu	37	15	31355448	31355448	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:31355448G>A	uc001zfm.2	-	7	900	c.772C>T	c.(772-774)CCT>TCT	p.P258S	TRPM1_uc010azy.2_Missense_Mutation_p.P171S|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	258	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		ACCACGTTAGGGCCCCCCTCC	0.612													41	108					0	0	1	0	0
CHRNA7	1139	broad.mit.edu	37	15	32404046	32404046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:32404046C>T	uc001zft.2	+	4	368	c.296C>T	c.(295-297)ACT>ATT	p.T99I	CHRNA7_uc010bab.1_Missense_Mutation_p.T99I|CHRNA7_uc010bac.1_Missense_Mutation_p.T99I|CHRNA7_uc010bad.1_RNA|CHRNA7_uc010bae.1_Intron|CHRNA7_uc010baf.2_Intron|CHRNA7_uc010bag.1_RNA|CHRNA7_uc010bah.1_RNA|CHRNA7_uc010bai.1_RNA|CHRNA7_uc010baj.1_5'Flank|CHRNA7_uc010bak.2_5'Flank	NM_000746	NP_000737	P36544	ACHA7_HUMAN	cholinergic receptor, nicotinic, alpha 7	99	Extracellular (Potential).				activation of MAPK activity|calcium ion transport|cellular calcium ion homeostasis|memory|negative regulation of tumor necrosis factor production|positive regulation of angiogenesis|positive regulation of cell proliferation|response to hypoxia|response to nicotine	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|beta-amyloid binding|chloride channel regulator activity|nicotinic acetylcholine-activated cation-selective channel activity|protein homodimerization activity|toxin binding			ovary(1)	1		all_lung(180;6.35e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)	Nicotine(DB00184)|Varenicline(DB01273)	GGGGTGAAGACTGTTCGTTTC	0.403													49	127					0	0	1	0	0
GREM1	26585	broad.mit.edu	37	15	33023078	33023078	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33023078G>A	uc001zhe.1	+	2	346	c.187G>A	c.(187-189)GGG>AGG	p.G63R	GREM1_uc001zhd.1_Intron|GREM1_uc010uby.1_Intron	NM_013372	NP_037504	O60565	GREM1_HUMAN	gremlin-1 precursor	63					negative regulation of BMP signaling pathway|nervous system development|regulation of epithelial to mesenchymal transition	extracellular space	cytokine activity				0		all_lung(180;1.49e-09)		all cancers(64;2.97e-18)|Epithelial(43;3.15e-12)|GBM - Glioblastoma multiforme(186;2.32e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0107)		GCGGGGCCAAGGGCGGGGCAC	0.662													11	49					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33840369	33840370	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33840369_33840370CC>TT	uc001zhi.2	+	9	849_850	c.779_780CC>TT	c.(778-780)GCC>GTT	p.A260V	RYR3_uc010bar.2_Missense_Mutation_p.A260V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	260	MIR 3.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GGGACTCGAGCCAGGTCTCTTT	0.51													4	24					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33840377	33840377	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33840377C>T	uc001zhi.2	+	9	857	c.787C>T	c.(787-789)CTT>TTT	p.L263F	RYR3_uc010bar.2_Missense_Mutation_p.L263F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	263	MIR 3.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGCCAGGTCTCTTTGGAGAGT	0.493													10	16					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33855038	33855038	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33855038G>A	uc001zhi.2	+	11	1043	c.973G>A	c.(973-975)GAA>AAA	p.E325K	RYR3_uc010bar.2_Missense_Mutation_p.E325K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	325	Cytoplasmic (By similarity).|MIR 4.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TATGAATTAGGAACTCAAGGA	0.388													12	31					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33873829	33873829	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33873829C>T	uc001zhi.2	+	14	1628	c.1558C>T	c.(1558-1560)CTC>TTC	p.L520F	RYR3_uc010bar.2_Missense_Mutation_p.L520F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	520	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCTGAACCTCCTCTACAAATT	0.448													24	75					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33895342	33895342	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33895342C>T	uc001zhi.2	+	18	2011	c.1941C>T	c.(1939-1941)TTC>TTT	p.F647F	RYR3_uc010bar.2_Silent_p.F647F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	647	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CAAACATCTTCCTGGGAGTCG	0.522													22	109					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33895456	33895456	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33895456C>T	uc001zhi.2	+	18	2125	c.2055C>T	c.(2053-2055)GCC>GCT	p.A685A	RYR3_uc010bar.2_Silent_p.A685A	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	685	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGGGCTGGGCCTCTTCTTCAG	0.567													61	183					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33916036	33916036	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33916036G>A	uc001zhi.2	+	20	2456	c.2386G>A	c.(2386-2388)GGA>AGA	p.G796R	RYR3_uc010bar.2_Missense_Mutation_p.G796R	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	796	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGGACGTCATGGAGAGTTTAA	0.403													12	103					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33920725	33920725	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33920725C>T	uc001zhi.2	+	21	2698	c.2628C>T	c.(2626-2628)ATC>ATT	p.I876I	RYR3_uc010bar.2_Silent_p.I876I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	876	4 X approximate repeats.|1.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTGAAAACATCCATGAGCTTT	0.443													17	67					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33941323	33941323	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33941323C>T	uc001zhi.2	+	31	4099	c.4029C>T	c.(4027-4029)GTC>GTT	p.V1343V	RYR3_uc010bar.2_Silent_p.V1343V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1343	4 X approximate repeats.|B30.2/SPRY 3.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CATCCTGTGTCTGGGTCGGAT	0.542													47	121					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33954784	33954784	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33954784G>A	uc001zhi.2	+	35	5123	c.5053G>A	c.(5053-5055)GAG>AAG	p.E1685K	RYR3_uc010bar.2_Missense_Mutation_p.E1685K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1685	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCAGAGCCCCGAGATTCCCTT	0.592													33	85					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33991943	33991943	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33991943C>T	uc001zhi.2	+	41	6358	c.6288C>T	c.(6286-6288)TTC>TTT	p.F2096F	RYR3_uc010bar.2_Silent_p.F2096F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2096	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCTGCCGTTTCCTTTGCTATT	0.438													7	29					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34014926	34014926	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34014926G>A	uc001zhi.2	+	44	6700	c.6630G>A	c.(6628-6630)GTG>GTA	p.V2210V	RYR3_uc010bar.2_Silent_p.V2210V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2210	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GTGAGAGTGTGGAAGAAAACG	0.542													40	104					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34018600	34018600	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34018600G>A	uc001zhi.2	+	46	6996	c.6926G>A	c.(6925-6927)GGA>GAA	p.G2309E	RYR3_uc010bar.2_Missense_Mutation_p.G2309E	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2309	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ATCCAGACAGGAAAGGGGGAA	0.557													3	19					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34030707	34030707	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34030707G>A	uc001zhi.2	+	50	7642	c.7572G>A	c.(7570-7572)TGG>TGA	p.W2524*	RYR3_uc010bar.2_Nonsense_Mutation_p.W2524*	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2524	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTTCAGGATGGGGGAGCTACG	0.512											OREG0023032	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	47					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34040696	34040696	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34040696G>A	uc001zhi.2	+	55	8234	c.8164G>A	c.(8164-8166)GAC>AAC	p.D2722N	RYR3_uc010bar.2_Missense_Mutation_p.D2722N	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2722	4.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGCTCCCCTCGACCTCTCAAA	0.517													9	17					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34064165	34064165	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34064165G>A	uc001zhi.2	+	63	8931	c.8861G>A	c.(8860-8862)CGA>CAA	p.R2954Q	RYR3_uc010bar.2_Missense_Mutation_p.R2954Q	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2954	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCTGGGTTACGAGCATTCTTT	0.443													7	20					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34064204	34064204	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34064204C>T	uc001zhi.2	+	63	8970	c.8900C>T	c.(8899-8901)ACT>ATT	p.T2967I	RYR3_uc010bar.2_Missense_Mutation_p.T2967I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2967	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTGGAGAAGACTTCAGAAAAC	0.458													4	23					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34077940	34077940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34077940G>A	uc001zhi.2	+	66	9416	c.9346G>A	c.(9346-9348)GAC>AAC	p.D3116N	RYR3_uc010bar.2_Missense_Mutation_p.D3116N	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3116					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GGAAATCAACGACCTGGCCGA	0.552													29	84					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34078170	34078170	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34078170G>A	uc001zhi.2	+	66	9646	c.9576G>A	c.(9574-9576)ATG>ATA	p.M3192I	RYR3_uc010bar.2_Missense_Mutation_p.M3192I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3192					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CCTCCTGGATGAAGCGCATTG	0.498													60	160					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34111984	34111984	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34111984C>T	uc001zhi.2	+	77	10804	c.10734C>T	c.(10732-10734)ACC>ACT	p.T3578T	RYR3_uc010bar.2_Silent_p.T3573T	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3578					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTTTGTACACCTCCTATTCCA	0.353													135	331					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34129178	34129178	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34129178C>T	uc001zhi.2	+	88	11710	c.11640C>T	c.(11638-11640)TCC>TCT	p.S3880S	RYR3_uc010bar.2_Silent_p.S3875S	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3880	Helical; Name=M2; (Potential).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGCTTCTGTCCCTCCTGGAAG	0.483													11	15					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34129929	34129929	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34129929C>T	uc001zhi.2	+	89	11818	c.11748C>T	c.(11746-11748)TTC>TTT	p.F3916F	RYR3_uc010bar.2_Silent_p.F3911F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3916					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTGACATGTTCTTGAAACTTA	0.393													11	16					0	0	1	0	0
AVEN	57099	broad.mit.edu	37	15	34159851	34159851	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34159851G>A	uc001zhj.2	-	5	874	c.818C>T	c.(817-819)TCC>TTC	p.S273F		NM_020371	NP_065104	Q9NQS1	AVEN_HUMAN	cell death regulator aven	273					anti-apoptosis|apoptosis	endomembrane system|intracellular|membrane|membrane fraction	protein binding			kidney(1)	1		all_lung(180;1.78e-08)		all cancers(64;1.66e-15)|GBM - Glioblastoma multiforme(113;1.42e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0359)		CTGCAGTGGGGAAGTGGGTTT	0.488													57	93					0	0	1	0	0
AVEN	57099	broad.mit.edu	37	15	34160047	34160047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34160047G>A	uc001zhj.2	-	5	678	c.622C>T	c.(622-624)CCT>TCT	p.P208S		NM_020371	NP_065104	Q9NQS1	AVEN_HUMAN	cell death regulator aven	208					anti-apoptosis|apoptosis	endomembrane system|intracellular|membrane|membrane fraction	protein binding			kidney(1)	1		all_lung(180;1.78e-08)		all cancers(64;1.66e-15)|GBM - Glioblastoma multiforme(113;1.42e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0359)		ACCTCTAAAGGAACTGTACCC	0.448													21	71					0	0	1	0	0
CHRM5	1133	broad.mit.edu	37	15	34356343	34356343	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34356343C>T	uc001zhk.1	+	3	2095	c.1425C>T	c.(1423-1425)ACC>ACT	p.T475T	CHRM5_uc001zhl.1_Silent_p.T475T	NM_012125	NP_036257	P08912	ACM5_HUMAN	cholinergic receptor, muscarinic 5	475	Extracellular (By similarity).				cell proliferation|inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;1.76e-08)		all cancers(64;4.82e-17)|GBM - Glioblastoma multiforme(113;2.58e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0262)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)	TCCCAGTCACCCTGTGGCACT	0.498													30	72					0	0	1	0	0
CHRM5	1133	broad.mit.edu	37	15	34356394	34356394	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34356394C>T	uc001zhk.1	+	3	2146	c.1476C>T	c.(1474-1476)CCC>CCT	p.P492P	CHRM5_uc001zhl.1_Silent_p.P492P	NM_012125	NP_036257	P08912	ACM5_HUMAN	cholinergic receptor, muscarinic 5	492	Helical; Name=7; (By similarity).				cell proliferation|inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;1.76e-08)		all cancers(64;4.82e-17)|GBM - Glioblastoma multiforme(113;2.58e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0262)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)	CTGTCAACCCCATCTGCTATG	0.478													23	74					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34640205	34640205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34640205C>T	uc001zif.2	+	2	207	c.52C>T	c.(52-54)CCT>TCT	p.P18S	C15orf55_uc010ucc.1_Missense_Mutation_p.P46S|C15orf55_uc010ucd.1_Missense_Mutation_p.P36S	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	18	Pro-rich.					cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GAGCATGAAACCTAGTGCCGC	0.532			T	BRD3|BRD4	lethal midline carcinoma								13	69					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34640283	34640283	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34640283G>A	uc001zif.2	+	2	285	c.130G>A	c.(130-132)GAG>AAG	p.E44K	C15orf55_uc010ucc.1_Missense_Mutation_p.E72K|C15orf55_uc010ucd.1_Missense_Mutation_p.E62K	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	44	Pro-rich.					cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CCCACCCAGGGAGCCACCTCC	0.592			T	BRD3|BRD4	lethal midline carcinoma								50	126					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34640458	34640458	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34640458C>T	uc001zif.2	+	2	460	c.305C>T	c.(304-306)TCT>TTT	p.S102F	C15orf55_uc010ucc.1_Missense_Mutation_p.S130F|C15orf55_uc010ucd.1_Missense_Mutation_p.S120F	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	102	Pro-rich.					cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GCTGAGCCCTCTCAAACTCAG	0.577			T	BRD3|BRD4	lethal midline carcinoma								40	66					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34640665	34640665	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34640665C>T	uc001zif.2	+	2	667	c.512C>T	c.(511-513)CCC>CTC	p.P171L	C15orf55_uc010ucc.1_Missense_Mutation_p.P199L|C15orf55_uc010ucd.1_Missense_Mutation_p.P189L	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	171	Pro-rich.					cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CAACTGGTCCCCATTGTGCCC	0.602			T	BRD3|BRD4	lethal midline carcinoma								14	30					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34646010	34646010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34646010C>T	uc001zif.2	+	4	1083	c.928C>T	c.(928-930)CCT>TCT	p.P310S	C15orf55_uc010ucc.1_Missense_Mutation_p.P338S|C15orf55_uc010ucd.1_Missense_Mutation_p.P328S	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	310						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GGGCCTGTCTCCTGCAACCCC	0.552			T	BRD3|BRD4	lethal midline carcinoma								38	85					0	0	1	0	0
LPCAT4	254531	broad.mit.edu	37	15	34656261	34656261	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:34656261G>A	uc001zig.2	-	5	699	c.605C>T	c.(604-606)CCT>CTT	p.P202L	LPCAT4_uc010bav.1_3'UTR	NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	202					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						GGTGCCCTCAGGAAAGAATAG	0.458													51	132					0	0	1	0	0
ACTC1	70	broad.mit.edu	37	15	35083487	35083487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:35083487G>A	uc001ziu.1	-	6	1061	c.818C>T	c.(817-819)TCT>TTT	p.S273F	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	273					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		GATGCCAGCAGATTCCATACC	0.343													19	79					0	0	1	0	0
ACTC1	70	broad.mit.edu	37	15	35084718	35084718	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:35084718C>T	uc001ziu.1	-	4	750	c.507G>A	c.(505-507)GAG>GAA	p.E169E	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	169					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		AAGCGTAGCCCTCATAGATGG	0.532													11	86					0	0	1	0	0
LOC723972	723972	broad.mit.edu	37	15	35529621	35529621	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:35529621G>A	uc001ziy.2	+	1		c.95G>A				NR_003144				Homo sapiens hepatopoietin PCn127 mRNA, complete cds.												0						TCGAATGAAGGCAAACTCGAA	0.473													63	143					0	0	1	0	0
ATPBD4	89978	broad.mit.edu	37	15	35742927	35742927	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:35742927G>A	uc001zja.2	-	5	526	c.464C>T	c.(463-465)TCA>TTA	p.S155L	ATPBD4_uc001ziz.2_Missense_Mutation_p.S139L	NM_080650	NP_542381	Q7L8W6	ATBD4_HUMAN	ATP binding domain 4 isoform 1	155											0		all_epithelial(112;2.11e-09)|Lung NSC(122;2.38e-08)|all_lung(180;3.65e-07)		all cancers(64;9.9e-19)|GBM - Glioblastoma multiforme(113;2.01e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)		AATGTTAGATGATATCATCTC	0.388													32	85					0	0	1	0	0
CSNK1A1P	161635	broad.mit.edu	37	15	37109956	37109956	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:37109956C>T	uc001zjg.3	-	1		c.752G>A				NR_027320				Homo sapiens casein kinase 1, alpha 1 pseudogene, mRNA (cDNA clone IMAGE:5166482).												0						GTATAAAATTCTTTGTATGCA	0.373													16	50					0	0	1	0	0
TMCO5A	145942	broad.mit.edu	37	15	38234401	38234401	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:38234401G>A	uc001zjw.2	+	8	617	c.514G>A	c.(514-516)GAA>AAA	p.E172K	TMCO5A_uc001zjv.1_Missense_Mutation_p.E172K|TMCO5A_uc010bbc.1_Missense_Mutation_p.E172K	NM_152453	NP_689666	Q8N6Q1	TMC5A_HUMAN	transmembrane and coiled-coil domains 5A	172	Potential.					integral to membrane				central_nervous_system(1)	1						GAAGTACCAGGAAACGTTGAA	0.368													65	140					0	0	1	0	0
SPRED1	161742	broad.mit.edu	37	15	38591722	38591722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:38591722C>T	uc001zka.3	+	2	516	c.181C>T	c.(181-183)CGT>TGT	p.R61C		NM_152594	NP_689807	Q7Z699	SPRE1_HUMAN	sprouty-related protein 1 with EVH-1 domain	61	WH1.				inactivation of MAPK activity|multicellular organismal development	caveola|nucleus	stem cell factor receptor binding			ovary(2)|lung(2)|skin(1)	5		all_cancers(109;4.88e-13)|all_epithelial(112;1.83e-11)|Lung NSC(122;2.21e-09)|all_lung(180;4.64e-08)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(113;2.41e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		CTTTTTTATCCGTGGAGAGCG	0.383									Legius_syndrome				25	65					0	0	1	0	0
RASGRP1	10125	broad.mit.edu	37	15	38803830	38803830	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:38803830G>A	uc001zke.3	-	8	1119	c.941C>T	c.(940-942)TCG>TTG	p.S314L	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Missense_Mutation_p.S176L|RASGRP1_uc010bbg.2_Missense_Mutation_p.S176L|RASGRP1_uc001zkd.3_Missense_Mutation_p.S314L	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	314	Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding	p.S314L(1)		large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		TGGGACATGCGAACTTGTCTC	0.493													9	80					0	0	1	0	0
C15orf53	400359	broad.mit.edu	37	15	38990420	38990420	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:38990420G>A	uc001zkf.1	+	2	224	c.214G>A	c.(214-216)GAT>AAT	p.D72N		NM_207444	NP_997327	Q8NAA6	CO053_HUMAN	hypothetical protein LOC400359	72											0		all_cancers(109;1.75e-13)|all_epithelial(112;1.02e-11)|Lung NSC(122;1.9e-09)|all_lung(180;4.04e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;8.39e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0321)		tctgggAGAAGATGCTTCCCT	0.254													21	42					0	0	1	0	0
C15orf53	400359	broad.mit.edu	37	15	38990427	38990427	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:38990427C>T	uc001zkf.1	+	2	231	c.221C>T	c.(220-222)TCC>TTC	p.S74F		NM_207444	NP_997327	Q8NAA6	CO053_HUMAN	hypothetical protein LOC400359	74											0		all_cancers(109;1.75e-13)|all_epithelial(112;1.02e-11)|Lung NSC(122;1.9e-09)|all_lung(180;4.04e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;8.39e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0321)		GAAGATGCTTCCCTTCTCTTC	0.274													20	50					0	0	1	0	0
C15orf53	400359	broad.mit.edu	37	15	38990708	38990708	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:38990708C>T	uc001zkf.1	+	2	512	c.502C>T	c.(502-504)CCT>TCT	p.P168S		NM_207444	NP_997327	Q8NAA6	CO053_HUMAN	hypothetical protein LOC400359	168											0		all_cancers(109;1.75e-13)|all_epithelial(112;1.02e-11)|Lung NSC(122;1.9e-09)|all_lung(180;4.04e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;8.39e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0321)		CCTCTCAGATCCTCTGGGGGT	0.527													12	13					0	0	1	0	0
C15orf54	400360	broad.mit.edu	37	15	39544521	39544521	+	Missense_Mutation	SNP	C	T	T	rs140379180	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39544521C>T	uc001zkg.2	+	2	553	c.185C>T	c.(184-186)CCT>CTT	p.P62L		NM_207445	NP_997328	Q8N8G6	CO054_HUMAN	hypothetical protein LOC400360	62											0		all_cancers(109;5.39e-14)|all_epithelial(112;3.14e-12)|Lung NSC(122;9.74e-10)|all_lung(180;2.23e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;1.19e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0706)		ACGGAGCTCCCTCTCAGGTTC	0.443													109	289					0	0	1	0	0
C15orf54	400360	broad.mit.edu	37	15	39544722	39544722	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39544722G>A	uc001zkg.2	+	2	754	c.386G>A	c.(385-387)TGG>TAG	p.W129*		NM_207445	NP_997328	Q8N8G6	CO054_HUMAN	hypothetical protein LOC400360	129											0		all_cancers(109;5.39e-14)|all_epithelial(112;3.14e-12)|Lung NSC(122;9.74e-10)|all_lung(180;2.23e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;1.19e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0706)		TCTCCTGGGTGGAAGAACATG	0.468													40	112					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39879646	39879646	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39879646G>A	uc001zkh.2	+	8	1398	c.1219G>A	c.(1219-1221)GAT>AAT	p.D407N	THBS1_uc010bbi.2_5'Flank	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	407	TSP type-1 1.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CCGCTCCTGCGATAGCCTCAA	0.587													13	30					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39879654	39879654	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39879654C>T	uc001zkh.2	+	8	1406	c.1227C>T	c.(1225-1227)CTC>CTT	p.L409L	THBS1_uc010bbi.2_5'Flank	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	409	TSP type-1 1.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GCGATAGCCTCAACAACCGAT	0.577													8	32					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39880361	39880361	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39880361G>A	uc001zkh.2	+	9	1592	c.1413G>A	c.(1411-1413)GGG>GGA	p.G471G	THBS1_uc010bbi.2_5'Flank	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	471	TSP type-1 2.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	AGATGAACGGGAAACCCTGTG	0.597													10	93					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39880407	39880407	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39880407G>C	uc001zkh.2	+	9	1638	c.1459G>C	c.(1459-1461)GAC>CAC	p.D487H	THBS1_uc010bbi.2_5'Flank	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	487	TSP type-1 2.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CTGCAAGAAAGACGCCTGCCC	0.612													22	44					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39884771	39884771	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39884771G>A	uc001zkh.2	+	17	2714	c.2535G>A	c.(2533-2535)CTG>CTA	p.L845L	THBS1_uc010bbi.2_Silent_p.L317L	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	845	TSP type-3 6.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	TCTTTCAGCTGGACTCTGACT	0.433													5	13					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39884993	39884993	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39884993G>A	uc001zkh.2	+	17	2936	c.2757G>A	c.(2755-2757)AAG>AAA	p.K919K	THBS1_uc010bbi.2_Silent_p.K391K	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	919	TSP type-3 8.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CCGACCAGAAGGACTCTGACG	0.502													7	39					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39885298	39885298	+	Silent	SNP	C	T	T	rs139289744	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39885298C>T	uc001zkh.2	+	18	3044	c.2865C>T	c.(2863-2865)ACC>ACT	p.T955T	THBS1_uc010bbi.2_Silent_p.T427T	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	955					activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	TCAGTGAGACCGATTTCCGCC	0.502													13	44					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39885739	39885739	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39885739C>T	uc001zkh.2	+	19	3316	c.3137C>T	c.(3136-3138)TCC>TTC	p.S1046F	THBS1_uc010bbi.2_Missense_Mutation_p.S518F	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	1046	TSP C-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GTCACCCAGTCCTACTGGGAC	0.547													50	129					0	0	1	0	0
FSIP1	161835	broad.mit.edu	37	15	39910311	39910311	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:39910311G>A	uc001zki.2	-	11	1542	c.1324C>T	c.(1324-1326)CCC>TCC	p.P442S		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	442										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		GAAAGCTGGGGGAACACAGGT	0.378													45	95					0	0	1	0	0
FSIP1	161835	broad.mit.edu	37	15	40034005	40034005	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40034005C>T	uc001zki.2	-	6	873	c.655_splice	c.e6+1	p.D219_splice		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1											ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		TTTAAATATACCTTTATTGAG	0.328													13	31					0	0	1	0	0
FSIP1	161835	broad.mit.edu	37	15	40068723	40068723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40068723C>T	uc001zki.2	-	2	221	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	1										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		TTATAATATCCATTGAAATCC	0.338													30	78					0	0	1	0	0
GPR176	11245	broad.mit.edu	37	15	40099395	40099395	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40099395G>A	uc001zkj.1	-	2	1103	c.237C>T	c.(235-237)TTC>TTT	p.F79F	GPR176_uc010uck.1_Silent_p.F19F	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	79	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		GGTTTTTAATGAACCTGTTGG	0.453													52	121					0	0	1	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40254023	40254023	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40254023C>T	uc001zkm.1	+	7	832	c.782C>T	c.(781-783)TCT>TTT	p.S261F	EIF2AK4_uc001zkl.2_Missense_Mutation_p.S261F|EIF2AK4_uc010bbj.1_5'UTR	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	261					translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		AGTGAAGATTCTCCTGGCTCT	0.323													31	75					0	0	1	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40300277	40300277	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40300277C>T	uc001zkm.1	+	25	3507	c.3457C>T	c.(3457-3459)CCC>TCC	p.P1153S	EIF2AK4_uc010bbj.1_Missense_Mutation_p.P854S|EIF2AK4_uc001zkn.1_Missense_Mutation_p.P253S|EIF2AK4_uc001zko.1_Missense_Mutation_p.P91S|EIF2AK4_uc010bbk.1_RNA	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	1153	Histidyl-tRNA synthetase-like.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		TCGATTTCATCCCAAAGAACT	0.408													54	185					0	0	1	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40301883	40301883	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40301883C>T	uc001zkm.1	+	26	3695	c.3645C>T	c.(3643-3645)ATC>ATT	p.I1215I	EIF2AK4_uc010bbj.1_Silent_p.I916I|EIF2AK4_uc001zkn.1_Silent_p.I315I|EIF2AK4_uc001zko.1_Silent_p.I153I|EIF2AK4_uc010bbk.1_RNA	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	1215	Histidyl-tRNA synthetase-like.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		ACTGTGGGATCCCAGAAGATA	0.313													48	89					0	0	1	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40313113	40313113	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40313113C>T	uc001zkm.1	+	31	4237	c.4187C>T	c.(4186-4188)TCT>TTT	p.S1396F	EIF2AK4_uc010bbj.1_Missense_Mutation_p.S1097F|EIF2AK4_uc001zkn.1_Missense_Mutation_p.S496F|EIF2AK4_uc001zko.1_Missense_Mutation_p.S277F|EIF2AK4_uc010bbk.1_RNA	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	1396	Histidyl-tRNA synthetase-like.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		ACAATAAGCTCTTGTGACCTC	0.507													27	74					0	0	1	0	0
SRP14	6727	broad.mit.edu	37	15	40328545	40328545	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40328545C>T	uc001zkq.2	-	5	472	c.400G>A	c.(400-402)GCA>ACA	p.A134T	SRP14_uc001zkr.2_3'UTR|uc001zks.1_5'Flank	NM_003134	NP_003125	P37108	SRP14_HUMAN	signal recognition particle 14kDa (homologous	134	Ala/Thr-rich.				negative regulation of translational elongation|response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|endoplasmic reticulum signal peptide binding|protein binding				0		all_cancers(109;7.56e-18)|all_epithelial(112;4.02e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.84e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0505)		TACTGtgctgctgttgctgct	0.234													18	67					0	0	1	0	0
BMF	90427	broad.mit.edu	37	15	40398107	40398107	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40398107G>A	uc001zkv.2	-	2	267	c.181C>T	c.(181-183)CGA>TGA	p.R61*	BMF_uc001zkt.2_Nonsense_Mutation_p.R61*|BMF_uc001zku.2_Nonsense_Mutation_p.R61*|BMF_uc001zkw.2_Nonsense_Mutation_p.R61*	NM_033503	NP_277038	Q96LC9	BMF_HUMAN	Bcl2 modifying factor isoform bmf-1	61				R -> Q (in Ref. 4; AAH69328).	activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	cytosol|mitochondrial outer membrane|myosin complex|plasma membrane	protein binding			ovary(1)	1		all_cancers(109;4.18e-18)|all_epithelial(112;6.15e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.29e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0516)		CTGGTGGGTCGAAGGCCAGGG	0.627													25	60					0	0	1	0	0
BUB1B	701	broad.mit.edu	37	15	40494791	40494791	+	Missense_Mutation	SNP	C	T	T	rs138332995		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40494791C>T	uc001zkx.3	+	14	1842	c.1630C>T	c.(1630-1632)CCT>TCT	p.P544S	BUB1B_uc010ucl.1_Missense_Mutation_p.P412S	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	544					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		TTTTTCCAGTCCTCCTGCAGA	0.378			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				32	154					0	0	1	0	0
PAK6	56924	broad.mit.edu	37	15	40564524	40564524	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40564524C>T	uc010bbl.2	+	6	1398	c.958C>T	c.(958-960)CCT>TCT	p.P320S	PAK6_uc010bbm.2_Missense_Mutation_p.P320S|PAK6_uc001zky.3_Missense_Mutation_p.P320S|PAK6_uc010bbn.2_Missense_Mutation_p.P320S|PAK6_uc001zlb.2_Missense_Mutation_p.P320S	NM_001128628	NP_001122100	Q9NQU5	PAK6_HUMAN	p21-activated kinase 6	320	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(5)|large_intestine(1)|ovary(1)|skin(1)	8		all_cancers(109;1.13e-18)|all_epithelial(112;1.62e-15)|Lung NSC(122;5.67e-11)|all_lung(180;1.41e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0823)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.51e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0544)		GACCTTCAGCCCTCTGACCAC	0.687													51	102					0	0	1	0	0
PAK6	56924	broad.mit.edu	37	15	40566414	40566414	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40566414C>T	uc010bbl.2	+	10	2255	c.1815C>T	c.(1813-1815)TCC>TCT	p.S605S	PAK6_uc010bbm.2_Silent_p.S605S|PAK6_uc001zky.3_Intron|PAK6_uc010bbn.2_Silent_p.S605S|PAK6_uc001zlb.2_Silent_p.S605S	NM_001128628	NP_001122100	Q9NQU5	PAK6_HUMAN	p21-activated kinase 6	605	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(5)|large_intestine(1)|ovary(1)|skin(1)	8		all_cancers(109;1.13e-18)|all_epithelial(112;1.62e-15)|Lung NSC(122;5.67e-11)|all_lung(180;1.41e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0823)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.51e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0544)		TCAGTGACTCCCCAGTGCAAG	0.572											OREG0023057	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	42	104					0	0	1	0	0
PLCB2	5330	broad.mit.edu	37	15	40585181	40585181	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40585181C>T	uc001zld.2	-	21	2573	c.2272G>A	c.(2272-2274)GAA>AAA	p.E758K	PLCB2_uc001zlc.2_5'Flank|PLCB2_uc010bbo.2_Missense_Mutation_p.E754K|PLCB2_uc010ucm.1_Missense_Mutation_p.E758K	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	758	C2.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		TTGTTGCCTTCCTCCATCACA	0.562													24	80					0	0	1	0	0
PLCB2	5330	broad.mit.edu	37	15	40594355	40594355	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40594355C>T	uc001zld.2	-	6	789	c.488G>A	c.(487-489)GGG>GAG	p.G163E	PLCB2_uc010bbo.2_Missense_Mutation_p.G163E|PLCB2_uc010ucm.1_Missense_Mutation_p.G163E|PLCB2_uc001zle.3_Missense_Mutation_p.G163E	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	163					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CGGAATCTTCCCTTCAGAGTT	0.612													16	216					0	0	1	0	0
PLCB2	5330	broad.mit.edu	37	15	40599853	40599853	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40599853G>A	uc001zld.2	-	1	322	c.21C>T	c.(19-21)GTC>GTT	p.V7V	PLCB2_uc010bbo.2_Silent_p.V7V|PLCB2_uc010ucm.1_Silent_p.V7V|PLCB2_uc001zle.3_Silent_p.V7V	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	7					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		GGGGCAGCAGGACAGGGTTGA	0.607													11	52					0	0	1	0	0
DISP2	85455	broad.mit.edu	37	15	40655966	40655966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40655966C>T	uc001zlk.1	+	2	349	c.260C>T	c.(259-261)CCC>CTC	p.P87L		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	87					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		CCATCCAGCCCCTTGGCCCCT	0.652													24	86					0	0	1	0	0
BAHD1	22893	broad.mit.edu	37	15	40754416	40754416	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40754416C>T	uc001zlu.2	+	3	1809	c.1738C>T	c.(1738-1740)CCT>TCT	p.P580S	BAHD1_uc001zlt.2_Missense_Mutation_p.P579S|BAHD1_uc010bbp.1_Missense_Mutation_p.P579S|BAHD1_uc001zlv.2_Missense_Mutation_p.P580S	NM_014952	NP_055767	Q8TBE0	BAHD1_HUMAN	bromo adjacent homology domain containing 1	580	Arg-rich.				heterochromatin formation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin silencing complex|chromosome	chromatin binding|DNA binding|protein binding				0		all_cancers(109;8.28e-19)|all_epithelial(112;2.64e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.46e-06)|BRCA - Breast invasive adenocarcinoma(123;0.08)		GCGCCCACGCCCTCGCCGCCG	0.647													49	109					0	0	1	0	0
CHST14	113189	broad.mit.edu	37	15	40764056	40764056	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40764056C>T	uc001zlw.2	+	1	844	c.644C>T	c.(643-645)CCC>CTC	p.P215L		NM_130468	NP_569735	Q8NCH0	CHSTE_HUMAN	dermatan 4 sulfotransferase 1	215	PAPS (By similarity).|Lumenal (Potential).				carbohydrate biosynthetic process|dermatan sulfate proteoglycan metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity|phosphate binding				0		all_cancers(109;2.34e-14)|all_epithelial(112;1.08e-11)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0781)		GTGCGGGAGCCCTTGGAACGC	0.592													29	104					0	0	1	0	0
RPUSD2	27079	broad.mit.edu	37	15	40866204	40866204	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40866204C>T	uc001zmd.1	+	3	1382	c.1382C>T	c.(1381-1383)GCC>GTC	p.A461V		NM_152260	NP_689473	Q8IZ73	RUSD2_HUMAN	RNA pseudouridylate synthase domain containing	461	Poly-Ala.				pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			skin(1)	1		all_cancers(109;2.74e-14)|all_epithelial(112;1.64e-11)|Lung NSC(122;6.69e-09)|all_lung(180;1.22e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.1e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0786)		GCTGCAGCTGCCCAGAAGATG	0.552													29	89					0	0	1	0	0
CASC5	57082	broad.mit.edu	37	15	40913356	40913356	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40913356C>T	uc010bbs.1	+	11	1133	c.972C>T	c.(970-972)TCC>TCT	p.S324S	CASC5_uc010ucq.1_Silent_p.S148S|CASC5_uc001zme.2_Silent_p.S298S|CASC5_uc010bbt.1_Silent_p.S298S	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	324	Interaction with BUB1 and BUB1B.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		TTCCCACATCCAGTGAGACCA	0.363													19	64					0	0	1	0	0
CASC5	57082	broad.mit.edu	37	15	40916996	40916996	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40916996C>T	uc010bbs.1	+	11	4773	c.4612C>T	c.(4612-4614)CAA>TAA	p.Q1538*	CASC5_uc010ucq.1_Nonsense_Mutation_p.Q1362*|CASC5_uc001zme.2_Nonsense_Mutation_p.Q1512*|CASC5_uc010bbt.1_Nonsense_Mutation_p.Q1512*	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	1538					acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		GGAAAATATTCAAACAACTAA	0.383													19	35					0	0	1	0	0
CASC5	57082	broad.mit.edu	37	15	40944253	40944253	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:40944253C>T	uc010bbs.1	+	22	6604	c.6443C>T	c.(6442-6444)ACC>ATC	p.T2148I	CASC5_uc010bbt.1_Missense_Mutation_p.T2122I	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	2148	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		GCTGTATTCACCTTTGTTTAT	0.358													12	61					0	0	1	0	0
PPP1R14D	54866	broad.mit.edu	37	15	41108451	41108451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41108451C>T	uc001zmy.2	-	2	324	c.256G>A	c.(256-258)GAT>AAT	p.D86N	PPP1R14D_uc001zmz.2_Silent_p.G124G	NM_017726	NP_060196	Q9NXH3	PP14D_HUMAN	protein phosphatase 1, regulatory subunit 14D	86					regulation of phosphorylation	cytoplasm	protein phosphatase inhibitor activity				0		all_cancers(109;6.29e-14)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.88e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		GTTGCTTGATCCTATTTGGAA	0.527													7	55					0	0	1	0	0
SPINT1	6692	broad.mit.edu	37	15	41148164	41148164	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41148164G>A	uc001zna.2	+	9	1444	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	SPINT1_uc001znb.2_Missense_Mutation_p.E398K|SPINT1_uc001znc.2_Missense_Mutation_p.E398K|SPINT1_uc010ucs.1_Missense_Mutation_p.E405K	NM_181642	NP_857593	O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	414	BPTI/Kunitz inhibitor 2.					extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		CCCCTTCAGCGAACACTGCGC	0.577													113	72					0	0	1	0	0
RHOV	171177	broad.mit.edu	37	15	41165381	41165381	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41165381C>T	uc001znd.2	-	3	736	c.586G>A	c.(586-588)GAA>AAA	p.E196K		NM_133639	NP_598378	Q96L33	RHOV_HUMAN	ras homolog gene family, member V	196					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome membrane|plasma membrane	GTP binding|metal ion binding				0		all_cancers(109;1.42e-13)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.58e-05)|COAD - Colon adenocarcinoma(120;0.149)|BRCA - Breast invasive adenocarcinoma(123;0.163)		TCAAATACTTCCTTCAAGTTC	0.592													39	85					0	0	1	0	0
INO80	54617	broad.mit.edu	37	15	41276491	41276491	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41276491G>A	uc001zni.2	-	33	4194	c.3981C>T	c.(3979-3981)ATC>ATT	p.I1327I	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	1327	Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						GAACAAATGGGATCACCAGGT	0.478													17	51					0	0	1	0	0
EXD1	161829	broad.mit.edu	37	15	41476198	41476198	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41476198G>A	uc001znk.2	-	10	1667	c.1476C>T	c.(1474-1476)TCC>TCT	p.S492S	EXD1_uc001znj.2_Silent_p.S290S|EXD1_uc010ucv.1_Silent_p.S550S	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	492					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						GAGGGAGTGTGGAAACCACAG	0.443													35	93					0	0	1	0	0
EXD1	161829	broad.mit.edu	37	15	41476499	41476499	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41476499G>A	uc001znk.2	-	10	1366	c.1175C>T	c.(1174-1176)CCT>CTT	p.P392L	EXD1_uc001znj.2_Missense_Mutation_p.P190L|EXD1_uc010ucv.1_Missense_Mutation_p.P450L	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	392					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						TAGATGTTGAGGATTTGTAGC	0.393													19	205					0	0	1	0	0
EXD1	161829	broad.mit.edu	37	15	41476767	41476767	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41476767C>T	uc001znk.2	-	10	1098	c.907G>A	c.(907-909)GAA>AAA	p.E303K	EXD1_uc001znj.2_Missense_Mutation_p.E101K|EXD1_uc010ucv.1_Missense_Mutation_p.E361K	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	303					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						TGAAGCAGTTCCTCTGGCAGC	0.408													32	68					0	0	1	0	0
EXD1	161829	broad.mit.edu	37	15	41482155	41482155	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41482155C>T	uc001znk.2	-	9	1053	c.862G>A	c.(862-864)GAC>AAC	p.D288N	EXD1_uc001znj.2_Missense_Mutation_p.D86N|EXD1_uc010ucv.1_Missense_Mutation_p.D346N	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	288					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						CCAAGCCGGTCTGCAGACCCT	0.527													26	69					0	0	1	0	0
NUSAP1	51203	broad.mit.edu	37	15	41643234	41643234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41643234C>T	uc001zns.3	+	4	585	c.355C>T	c.(355-357)CAT>TAT	p.H119Y	NUSAP1_uc001znq.3_5'UTR|NUSAP1_uc001znr.3_Missense_Mutation_p.H119Y|NUSAP1_uc010bce.2_Missense_Mutation_p.H119Y|NUSAP1_uc001znt.3_Missense_Mutation_p.H104Y|NUSAP1_uc001znv.3_Missense_Mutation_p.H118Y|NUSAP1_uc001znu.3_Missense_Mutation_p.H118Y|NUSAP1_uc010ucw.1_Missense_Mutation_p.H96Y|NUSAP1_uc001znw.3_5'UTR	NM_016359	NP_057443	Q9BXS6	NUSAP_HUMAN	nucleolar and spindle associated protein 1	119					cytokinesis after mitosis|establishment of mitotic spindle localization|mitotic chromosome condensation|positive regulation of mitosis	chromosome|cytoplasm|nucleolus	DNA binding				0		all_cancers(109;5.07e-19)|all_epithelial(112;2.43e-16)|Lung NSC(122;1.81e-11)|all_lung(180;4.81e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;9.63e-17)|GBM - Glioblastoma multiforme(113;1.59e-06)|BRCA - Breast invasive adenocarcinoma(123;0.168)		ATTCCAGAATCATGAAAAGCA	0.378													11	23					0	0	1	0	0
NDUFAF1	51103	broad.mit.edu	37	15	41679779	41679779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41679779C>T	uc001znx.2	-	5	1229	c.847G>A	c.(847-849)GGA>AGA	p.G283R	NDUFAF1_uc010bcf.2_RNA	NM_016013	NP_057097	Q9Y375	CIA30_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	283					mitochondrial electron transport, NADH to ubiquinone|protein complex assembly	mitochondrial respiratory chain complex I	unfolded protein binding			ovary(1)	1		all_cancers(109;5.07e-19)|all_epithelial(112;2.43e-16)|Lung NSC(122;1.81e-11)|all_lung(180;4.81e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;8e-17)|GBM - Glioblastoma multiforme(113;1.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.114)		AAGGTGAATCCTATAGAAGAG	0.358													17	67					0	0	1	0	0
RTF1	23168	broad.mit.edu	37	15	41769408	41769408	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41769408C>T	uc001zny.2	+	13	1618	c.1606C>T	c.(1606-1608)CAA>TAA	p.Q536*		NM_015138	NP_055953	Q92541	RTF1_HUMAN	Paf1/RNA polymerase II complex component	536	Potential.				histone modification|regulation of transcription, DNA-dependent|transcription initiation, DNA-dependent	nucleoplasm	protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(109;1.79e-19)|all_epithelial(112;8.18e-17)|Lung NSC(122;3.16e-11)|all_lung(180;8.14e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;1.15e-16)|GBM - Glioblastoma multiforme(113;1.81e-06)|BRCA - Breast invasive adenocarcinoma(123;0.119)		CAAACAAATCCAAGATCAACT	0.512													47	179					0	0	1	0	0
LTK	4058	broad.mit.edu	37	15	41796986	41796986	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41796986G>A	uc001zoa.3	-	17	2283	c.2105C>T	c.(2104-2106)TCC>TTC	p.S702F	LTK_uc001zob.3_Missense_Mutation_p.S641F|LTK_uc010ucx.1_Missense_Mutation_p.S572F|LTK_uc010bcg.2_Missense_Mutation_p.S400F	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	702	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		ATCTGTCTTGGATGTGAAGAT	0.607										TSP Lung(18;0.14)			20	56					0	0	1	0	0
LTK	4058	broad.mit.edu	37	15	41797425	41797425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41797425C>T	uc001zoa.3	-	15	2084	c.1906G>A	c.(1906-1908)GAA>AAA	p.E636K	LTK_uc001zob.3_Missense_Mutation_p.E575K|LTK_uc010ucx.1_Missense_Mutation_p.E506K|LTK_uc010bcg.2_Missense_Mutation_p.E334K	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	636	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		AAGTGATTTTCCTCCAGGTAG	0.602										TSP Lung(18;0.14)			33	20					0	0	1	0	0
LTK	4058	broad.mit.edu	37	15	41797462	41797462	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41797462C>T	uc001zoa.3	-	15	2047	c.1869G>A	c.(1867-1869)CTG>CTA	p.L623L	LTK_uc001zob.3_Silent_p.L562L|LTK_uc010ucx.1_Silent_p.L493L|LTK_uc010bcg.2_Silent_p.L321L	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	623	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		TGTCCTGGGCCAGTTGCAGCA	0.602										TSP Lung(18;0.14)			18	39					0	0	1	0	0
LTK	4058	broad.mit.edu	37	15	41804342	41804342	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41804342C>T	uc001zoa.3	-	4	659	c.481G>A	c.(481-483)GGG>AGG	p.G161R	LTK_uc001zob.3_Missense_Mutation_p.G161R|LTK_uc010ucx.1_Missense_Mutation_p.G161R|LTK_uc010bcg.2_Intron	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	161	Extracellular (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		CCCTGCTGCCCCACCAGGATG	0.512										TSP Lung(18;0.14)			10	29					0	0	1	0	0
RPAP1	26015	broad.mit.edu	37	15	41819639	41819639	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41819639G>A	uc001zod.2	-	12	1717	c.1593C>T	c.(1591-1593)GCC>GCT	p.A531A		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	531						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CATCATGTCGGGCCAGGTCAG	0.552													21	75					0	0	1	0	0
TYRO3	7301	broad.mit.edu	37	15	41853402	41853402	+	Missense_Mutation	SNP	G	A	A	rs148972694	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:41853402G>A	uc001zof.1	+	2	426	c.202G>A	c.(202-204)GGG>AGG	p.G68R	TYRO3_uc001zoe.2_Missense_Mutation_p.G68R	NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	68	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CAGTGTGGAGGGGATGGAGGA	0.592													8	72					0	0	1	0	0
MGA	23269	broad.mit.edu	37	15	42028729	42028729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42028729C>T	uc010ucy.1	+	13	4448	c.4267C>T	c.(4267-4269)CCT>TCT	p.P1423S	MGA_uc010ucz.1_Missense_Mutation_p.P1423S|MGA_uc010uda.1_Intron	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1423						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TCCATTGTCCCCTGGGAAAAT	0.463													16	33					0	0	1	0	0
MGA	23269	broad.mit.edu	37	15	42059249	42059249	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42059249C>T	uc010ucy.1	+	24	9150	c.8969C>T	c.(8968-8970)GCC>GTC	p.A2990V	MGA_uc010ucz.1_Missense_Mutation_p.A2781V	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2951						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CCAAAGTTGGCCCCTCTAGGT	0.512													20	50					0	0	1	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42113041	42113041	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42113041C>T	uc001zok.3	+	24	2797	c.2511C>T	c.(2509-2511)TCC>TCT	p.S837S	MAPKBP1_uc001zoj.3_Silent_p.S831S|MAPKBP1_uc010bcj.2_Silent_p.S338S|MAPKBP1_uc010bci.2_Silent_p.S831S|MAPKBP1_uc010udb.1_Silent_p.S670S|MAPKBP1_uc010bck.2_Silent_p.S48S|MAPKBP1_uc010bcl.2_Silent_p.S338S	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	837										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		CACAGGAGTCCGTGGGGTTCC	0.488													11	25					0	0	1	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42113243	42113243	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42113243C>T	uc001zok.3	+	24	2999	c.2713C>T	c.(2713-2715)CTT>TTT	p.L905F	MAPKBP1_uc001zoj.3_Missense_Mutation_p.L899F|MAPKBP1_uc010bcj.2_Missense_Mutation_p.L406F|MAPKBP1_uc010bci.2_Missense_Mutation_p.L899F|MAPKBP1_uc010udb.1_Missense_Mutation_p.L738F|MAPKBP1_uc010bck.2_Missense_Mutation_p.L116F|MAPKBP1_uc010bcl.2_Missense_Mutation_p.L406F	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	905										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		GCAGGAGGCCCTTGAGACTTC	0.612													15	72					0	0	1	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42116018	42116018	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42116018C>T	uc001zok.3	+	30	4276	c.3990C>T	c.(3988-3990)TTC>TTT	p.F1330F	MAPKBP1_uc001zoj.3_Silent_p.F1324F|MAPKBP1_uc010bcj.2_Silent_p.F831F|MAPKBP1_uc010bci.2_Intron|MAPKBP1_uc010udb.1_Silent_p.F1163F|MAPKBP1_uc010bck.2_Silent_p.F541F|MAPKBP1_uc010bcl.2_Silent_p.F831F	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	1330										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		AGCCTGGCTTCCCGGTGGGCC	0.612													49	96					0	0	1	0	0
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42127077	42127077	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42127077C>T	uc001zoo.3	+	2	244	c.204C>T	c.(202-204)TCC>TCT	p.S68S	JMJD7-PLA2G4B_uc010bcm.1_RNA|JMJD7-PLA2G4B_uc001zom.2_Intron|JMJD7-PLA2G4B_uc001zon.2_Silent_p.S68S|JMJD7-PLA2G4B_uc010bcn.2_Silent_p.S68S|JMJD7-PLA2G4B_uc001zop.1_5'UTR|JMJD7-PLA2G4B_uc001zoq.3_5'Flank	NM_005090	NP_005081	P0C869	PA24B_HUMAN	JMJD7-PLA2G4B protein	Error:Variant_position_missing_in_P0C869_after_alignment					arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						AGAAGTGGTCCCTCCCCTATT	0.617													25	72					0	0	1	0	0
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42127274	42127274	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42127274C>T	uc001zoo.3	+	3	365	c.325C>T	c.(325-327)CTG>TTG	p.L109L	JMJD7-PLA2G4B_uc001zom.2_Silent_p.L9L|JMJD7-PLA2G4B_uc001zon.2_Silent_p.L109L|JMJD7-PLA2G4B_uc010bcn.2_Silent_p.L109L|JMJD7-PLA2G4B_uc001zop.1_Silent_p.L9L|JMJD7-PLA2G4B_uc001zoq.3_5'Flank	NM_005090	NP_005081	P0C869	PA24B_HUMAN	JMJD7-PLA2G4B protein	Error:Variant_position_missing_in_P0C869_after_alignment					arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						CCGCCTGCCCCTGAGCTTCGT	0.652													47	98					0	0	1	0	0
SPTBN5	51332	broad.mit.edu	37	15	42154381	42154381	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42154381G>A	uc001zos.2	-	44	7723	c.7390C>T	c.(7390-7392)CCT>TCT	p.P2464S		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2499	Spectrin 22.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GGGCTGCGAGGAGCGGGGCTC	0.622													6	17					0	0	1	0	0
SPTBN5	51332	broad.mit.edu	37	15	42173354	42173354	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42173354G>A	uc001zos.2	-	13	2764	c.2431C>T	c.(2431-2433)CCT>TCT	p.P811S		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	846					actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GCATCCCCAGGGCCAGGGTGG	0.602													23	33					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42279563	42279563	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42279563C>T	uc001zow.1	-	16	1755	c.1755G>A	c.(1753-1755)CCG>CCA	p.P585P	PLA2G4E_uc010udc.1_Silent_p.P57P|PLA2G4E_uc001zov.1_Silent_p.P238P	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	602	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		CAGGCAGGATCGGCTCGTCTT	0.562													10	24					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42285037	42285037	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42285037G>A	uc001zow.1	-	12	1281	c.1281C>T	c.(1279-1281)CTC>CTT	p.L427L	PLA2G4E_uc010udc.1_5'UTR|PLA2G4E_uc001zov.1_Silent_p.L80L	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	444	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		GGAATTTGCGGAGCTGGTCTG	0.582													28	45					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42297140	42297140	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42297140C>T	uc001zow.1	-	4	475	c.475G>A	c.(475-477)GAG>AAG	p.E159K		NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	170					phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		ACTCACCTCTCCTCCAGCAGG	0.622													3	19					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42298192	42298192	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42298192G>A	uc001zow.1	-	3	434	c.434C>T	c.(433-435)CCG>CTG	p.P145L		NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	156					phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		ACCCACCTGCGGGTTGAGTGG	0.522													11	47					0	0	1	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42375933	42375933	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42375933C>T	uc001zox.2	-	7	611	c.516G>A	c.(514-516)GGG>GGA	p.G172G		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	172					phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		CAGCGGTGCTCCCTGTGCTGT	0.627													55	101					0	0	1	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42379582	42379582	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42379582C>T	uc001zox.2	-	3	266	c.171G>A	c.(169-171)ATG>ATA	p.M57I		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	57	C2.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		TCTTAAACTTCATTCCAGGTG	0.547													56	141					0	0	1	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42379884	42379884	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42379884G>A	uc001zox.2	-	2	155	c.60C>T	c.(58-60)ACC>ACT	p.T20T		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	20	C2.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		GCTGCCAGCAGGTAGAGGCCT	0.637													12	40					0	0	1	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42434764	42434764	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42434764G>A	uc001zoz.2	-	19	2354	c.2291C>T	c.(2290-2292)CCC>CTC	p.P764L	PLA2G4F_uc010bcq.2_Missense_Mutation_p.P61L|PLA2G4F_uc001zoy.2_Missense_Mutation_p.P396L|PLA2G4F_uc010bcr.2_Missense_Mutation_p.P515L|PLA2G4F_uc001zpa.2_Missense_Mutation_p.P515L|PLA2G4F_uc010bcs.2_Missense_Mutation_p.P551L	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	764	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		GTTAACCAGGGGGAAGTGCAG	0.632													19	50					0	0	1	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42437980	42437980	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42437980C>T	uc001zoz.2	-	15	1719	c.1656G>A	c.(1654-1656)CGG>CGA	p.R552R	PLA2G4F_uc010bcq.2_5'Flank|PLA2G4F_uc001zoy.2_Silent_p.R184R|PLA2G4F_uc010bcr.2_Silent_p.R303R|PLA2G4F_uc001zpa.2_Silent_p.R303R|PLA2G4F_uc010bcs.2_Silent_p.R339R	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	552	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		GGTAACAGATCCGGGGTTCAG	0.632													9	63					0	0	1	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42439523	42439523	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42439523C>T	uc001zoz.2	-	13	1281	c.1218G>A	c.(1216-1218)AGG>AGA	p.R406R	PLA2G4F_uc010bcq.2_5'Flank|PLA2G4F_uc001zoy.2_Silent_p.R38R|PLA2G4F_uc010bcr.2_Silent_p.R157R|PLA2G4F_uc001zpa.2_Silent_p.R157R|PLA2G4F_uc010bcs.2_Silent_p.R193R	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	406	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		AGGCTGGGTCCCTGTAGAGTG	0.632													17	35					0	0	1	0	0
VPS39	23339	broad.mit.edu	37	15	42458405	42458405	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42458405G>A	uc001zpd.2	-	17	1816	c.1665C>T	c.(1663-1665)TTC>TTT	p.F555F	VPS39_uc001zpc.2_Silent_p.F544F|VPS39_uc001zpb.2_5'UTR	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	555					protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		CTGAGTAGGAGAAAATCAAAT	0.512													21	63					0	0	1	0	0
VPS39	23339	broad.mit.edu	37	15	42458807	42458807	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42458807G>A	uc001zpd.2	-	16	1744	c.1593C>T	c.(1591-1593)TCC>TCT	p.S531S	VPS39_uc001zpc.2_Silent_p.S520S|VPS39_uc001zpb.2_5'Flank	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	531					protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		CTTTCAGAGGGGAGTTGGCTT	0.547													21	51					0	0	1	0	0
VPS39	23339	broad.mit.edu	37	15	42459061	42459061	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42459061G>A	uc001zpd.2	-	15	1612	c.1461C>T	c.(1459-1461)TGC>TGT	p.C487C	VPS39_uc001zpc.2_Silent_p.C476C|VPS39_uc001zpb.2_5'Flank	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	487					protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		CCTCGATGTGGCAGTGATTGT	0.552													47	104					0	0	1	0	0
CAPN3	825	broad.mit.edu	37	15	42678454	42678454	+	Missense_Mutation	SNP	G	A	A	rs35855730		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42678454G>A	uc001zpn.1	+	3	775	c.469G>A	c.(469-471)GAA>AAA	p.E157K	CAPN3_uc001zpk.1_5'UTR|CAPN3_uc001zpl.1_Missense_Mutation_p.E70K|CAPN3_uc010udf.1_Missense_Mutation_p.E70K|CAPN3_uc010udg.1_Missense_Mutation_p.E70K|CAPN3_uc001zpo.1_Missense_Mutation_p.E157K|CAPN3_uc001zpp.1_Missense_Mutation_p.E157K	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	157	Calpain catalytic.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		AAGTTTCATCGAAAACTACGC	0.552											OREG0023085	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	50	120					0	0	1	0	0
CAPN3	825	broad.mit.edu	37	15	42689053	42689053	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42689053G>A	uc001zpn.1	+	9	1477	c.1171G>A	c.(1171-1173)GTC>ATC	p.V391I	CAPN3_uc001zpk.1_Missense_Mutation_p.V164I|CAPN3_uc001zpl.1_Missense_Mutation_p.V304I|CAPN3_uc010udf.1_Missense_Mutation_p.V304I|CAPN3_uc010udg.1_Missense_Mutation_p.V256I|CAPN3_uc001zpo.1_Missense_Mutation_p.V391I|CAPN3_uc001zpp.1_Missense_Mutation_p.V343I	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	391	Calpain catalytic.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		GCAGCACCAGGTCACTGAGGA	0.542													5	78					0	0	1	0	0
LRRC57	255252	broad.mit.edu	37	15	42837368	42837368	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:42837368C>T	uc001zqd.1	-	4	953	c.585G>A	c.(583-585)CAG>CAA	p.Q195Q	LRRC57_uc001zqc.2_Silent_p.Q195Q	NM_153260	NP_694992	Q8N9N7	LRC57_HUMAN	leucine rich repeat containing 57	195	LRR 7.										0		all_cancers(109;1.99e-12)|all_epithelial(112;5.11e-11)|Lung NSC(122;4.53e-07)|all_lung(180;1.64e-06)|Melanoma(134;0.0262)		GBM - Glioblastoma multiforme(94;6.87e-07)		TGAGGATGCTCTGGGGAAGCA	0.423													36	83					0	0	1	0	0
CDAN1	146059	broad.mit.edu	37	15	43026533	43026533	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43026533T>C	uc001zql.2	-	7	1265	c.1148A>G	c.(1147-1149)AAC>AGC	p.N383S	CDAN1_uc001zqk.2_5'UTR|CDAN1_uc010bcx.1_Intron	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	383						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		TTTGTCCAGGTTGGAAAGAAC	0.557													15	43					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43038186	43038186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43038186G>A	uc001zqo.2	-	15	3981	c.3542C>T	c.(3541-3543)TCG>TTG	p.S1181L	TTBK2_uc010bcy.2_Missense_Mutation_p.S1112L|uc001zqn.2_5'Flank	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	1181	Ser-rich.				cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		ATGTGGGGACGAACTCCTCTG	0.592													26	69					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43045247	43045247	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43045247G>A	uc001zqo.2	-	14	2636	c.2197C>T	c.(2197-2199)CAG>TAG	p.Q733*	TTBK2_uc010bcy.2_Nonsense_Mutation_p.Q664*	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	733					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		TGATCTATCTGAAGCCCCAAA	0.448													18	204					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43067772	43067772	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43067772G>A	uc001zqo.2	-	13	1998	c.1559C>T	c.(1558-1560)TCT>TTT	p.S520F	TTBK2_uc010bcy.2_Missense_Mutation_p.S451F	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	520					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		GGTGTTGGCAGAAGCAGGCTT	0.502													33	90					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43075811	43075811	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43075811G>A	uc001zqo.2	-	11	1442	c.1003C>T	c.(1003-1005)CCT>TCT	p.P335S	TTBK2_uc010bcy.2_Missense_Mutation_p.P266S|TTBK2_uc001zqp.2_Missense_Mutation_p.P335S|TTBK2_uc010bcz.1_Missense_Mutation_p.P300S	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	335					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		AAGTCTCCAGGGATGGGAGTA	0.373													83	191					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43120225	43120225	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43120225G>A	uc001zqo.2	-	6	877	c.438C>T	c.(436-438)AAC>AAT	p.N146N	TTBK2_uc010bcy.2_Silent_p.N77N|TTBK2_uc001zqp.2_Silent_p.N146N|TTBK2_uc010bcz.1_Intron	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	146	Protein kinase.				cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		CCATAGCGAAGTTCGACTAGA	0.343													9	63					0	0	1	0	0
UBR1	197131	broad.mit.edu	37	15	43299342	43299342	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43299342G>A	uc001zqq.2	-	30	3416	c.3350C>T	c.(3349-3351)TCG>TTG	p.S1117L		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1117	RING-type; atypical.				cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		GACACAGGCCGATAATACCAT	0.423													40	120					0	0	1	0	0
UBR1	197131	broad.mit.edu	37	15	43351929	43351929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43351929G>A	uc001zqq.2	-	8	1022	c.956C>T	c.(955-957)TCC>TTC	p.S319F	UBR1_uc010udk.1_Missense_Mutation_p.S319F	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	319					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		GTTCATCCAGGAACCAAGACG	0.333													14	100					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43495431	43495431	+	Missense_Mutation	SNP	C	T	T	rs150037117	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43495431C>T	uc001zra.3	-	11	1961	c.1661G>A	c.(1660-1662)CGA>CAA	p.R554Q	EPB42_uc001zqz.3_Missense_Mutation_p.R221Q|EPB42_uc010bde.2_Intron|EPB42_uc001zrb.3_Missense_Mutation_p.R584Q|EPB42_uc010udm.1_Missense_Mutation_p.R476Q	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	554					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		GGGTGGGTTTCGCTCAAAATT	0.478													24	79					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43500853	43500853	+	Missense_Mutation	SNP	C	T	T	rs143974871	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43500853C>T	uc001zra.3	-	7	1253	c.953G>A	c.(952-954)GGC>GAC	p.G318D	EPB42_uc001zqz.3_5'UTR|EPB42_uc010bde.2_Missense_Mutation_p.G163D|EPB42_uc001zrb.3_Missense_Mutation_p.G348D|EPB42_uc010udm.1_Missense_Mutation_p.G240D	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	318					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		GCCTCTCTGGCCTTCTCCGTT	0.587													30	332					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43501528	43501528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43501528C>T	uc001zra.3	-	6	1076	c.776G>A	c.(775-777)CGA>CAA	p.R259Q	EPB42_uc001zqz.3_5'UTR|EPB42_uc010bde.2_Missense_Mutation_p.R104Q|EPB42_uc001zrb.3_Missense_Mutation_p.R289Q|EPB42_uc010udm.1_Missense_Mutation_p.R181Q	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	259					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		AGGTCGGCCTCGGCCGGTGAG	0.672													6	57					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43503703	43503703	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43503703G>A	uc001zra.3	-	4	760	c.460C>T	c.(460-462)CAG>TAG	p.Q154*	EPB42_uc001zqz.3_5'Flank|EPB42_uc010bde.2_5'UTR|EPB42_uc001zrb.3_Nonsense_Mutation_p.Q184*|EPB42_uc010udm.1_Nonsense_Mutation_p.Q76*	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	154					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		TCCATGCGCTGAGCCTCATTC	0.582													30	89					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43507295	43507295	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43507295C>T	uc001zra.3	-	3	728	c.428G>A	c.(427-429)AGA>AAA	p.R143K	EPB42_uc010bde.2_5'UTR|EPB42_uc001zrb.3_Missense_Mutation_p.R173K|EPB42_uc010udm.1_Intron	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	143					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		AAACTTACCTCTATTCCAGGG	0.597													9	32					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43507420	43507420	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43507420G>A	uc001zra.3	-	3	603	c.303C>T	c.(301-303)TCC>TCT	p.S101S	EPB42_uc010bde.2_5'UTR|EPB42_uc001zrb.3_Silent_p.S131S|EPB42_uc010udm.1_Intron	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	101					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		AGATGGTCCAGGACTGGGCAT	0.567													31	76					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43508587	43508587	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43508587G>A	uc001zra.3	-	2	375	c.75C>T	c.(73-75)GCC>GCT	p.A25A	EPB42_uc010bde.2_5'UTR|EPB42_uc001zrb.3_Silent_p.A55A|EPB42_uc010udm.1_Silent_p.A25A	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	25					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		GGGAGCTGAGGGCCTTGGTGT	0.562													9	95					0	0	1	0	0
TGM5	9333	broad.mit.edu	37	15	43531170	43531170	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43531170G>A	uc001zrd.1	-	9	1198	c.1190C>T	c.(1189-1191)TCG>TTG	p.S397L	TGM5_uc001zrc.1_Missense_Mutation_p.S54L|TGM5_uc001zre.1_Missense_Mutation_p.S315L	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	397					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	ATTCACCATCGAAAACACAAA	0.527													14	55					0	0	1	0	0
TGM5	9333	broad.mit.edu	37	15	43552311	43552311	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43552311C>T	uc001zrd.1	-	3	383	c.375G>A	c.(373-375)CAG>CAA	p.Q125Q	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	125					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	TCACAGACCCCTGGAAGGAGT	0.612													53	75					0	0	1	0	0
TGM5	9333	broad.mit.edu	37	15	43552318	43552318	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43552318G>A	uc001zrd.1	-	3	376	c.368C>T	c.(367-369)TCC>TTC	p.S123F	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	123					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	CCCCTGGAAGGAGTCGATGTG	0.627													22	107					0	0	1	0	0
TGM5	9333	broad.mit.edu	37	15	43552380	43552380	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43552380C>T	uc001zrd.1	-	3	314	c.306G>A	c.(304-306)GTG>GTA	p.V102V	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	102					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	CGCACAAGCTCACCTCTGTGG	0.642													28	76					0	0	1	0	0
TGM7	116179	broad.mit.edu	37	15	43569108	43569108	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43569108G>C	uc001zrf.1	-	12	1930	c.1925C>G	c.(1924-1926)ACG>AGG	p.T642R		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	642					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	CAGCACCATCGTGCAGCTGCT	0.582													21	42					0	0	1	0	0
TGM7	116179	broad.mit.edu	37	15	43579608	43579608	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43579608C>T	uc001zrf.1	-	6	740	c.735G>A	c.(733-735)GAG>GAA	p.E245E		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	245					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	TGGAGTAGTCCTCGCCCCAGT	0.602													12	38					0	0	1	0	0
TGM7	116179	broad.mit.edu	37	15	43585109	43585109	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43585109G>A	uc001zrf.1	-	3	242	c.237C>T	c.(235-237)TTC>TTT	p.F79F		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	79					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	CCCGGGTGAGGAAGAATGTGG	0.527													59	190					0	0	1	0	0
ADAL	161823	broad.mit.edu	37	15	43641199	43641199	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43641199C>T	uc010udo.1	+	10	1221	c.647C>T	c.(646-648)TCC>TTC	p.S216F	ADAL_uc001zrh.2_Missense_Mutation_p.S243F|ADAL_uc001zri.1_Missense_Mutation_p.S128F	NM_001159280	NP_001152752	Q6DHV7	ADAL_HUMAN	adenosine deaminase-like isoform 1	243					adenosine catabolic process|inosine biosynthetic process|purine ribonucleoside monophosphate biosynthetic process		adenosine deaminase activity|metal ion binding				0		all_cancers(109;7.96e-11)|all_epithelial(112;2.96e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;9.31e-07)		GAGGGAGGATCCCTGGATCTG	0.488													31	61					0	0	1	0	0
TUBGCP4	27229	broad.mit.edu	37	15	43668391	43668391	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43668391C>T	uc001zro.2	+	2	414	c.174C>T	c.(172-174)TTC>TTT	p.F58F	TUBGCP4_uc001zrn.2_Silent_p.F58F|TUBGCP4_uc010bdh.2_5'Flank	NM_014444	NP_055259	Q9UGJ1	GCP4_HUMAN	tubulin, gamma complex associated protein 4	58					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	structural constituent of cytoskeleton			ovary(3)	3		all_cancers(109;1.27e-10)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.72e-06)|all_lung(180;1.59e-05)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;3.53e-07)		TCACTGAGTTCATTGAACAGT	0.542											OREG0023088	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	89					0	0	1	0	0
TUBGCP4	27229	broad.mit.edu	37	15	43670062	43670062	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43670062C>T	uc001zro.2	+	5	642	c.402C>T	c.(400-402)CCC>CCT	p.P134P	TUBGCP4_uc001zrn.2_Silent_p.P134P|TUBGCP4_uc010bdh.2_RNA	NM_014444	NP_055259	Q9UGJ1	GCP4_HUMAN	tubulin, gamma complex associated protein 4	134					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	structural constituent of cytoskeleton			ovary(3)	3		all_cancers(109;1.27e-10)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.72e-06)|all_lung(180;1.59e-05)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;3.53e-07)		TTCTTTTTCCCTCTGTGATGG	0.323													29	103					0	0	1	0	0
TP53BP1	7158	broad.mit.edu	37	15	43749110	43749110	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43749110G>A	uc001zrs.2	-	12	1829	c.1681C>T	c.(1681-1683)CCT>TCT	p.P561S	TP53BP1_uc010udp.1_Missense_Mutation_p.P561S|TP53BP1_uc001zrq.3_Missense_Mutation_p.P566S|TP53BP1_uc001zrr.3_Missense_Mutation_p.P566S|TP53BP1_uc010udq.1_Missense_Mutation_p.P566S	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	561					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		TTTTCAGCAGGAACAAATTTA	0.413								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					8	103					0	0	1	0	0
TP53BP1	7158	broad.mit.edu	37	15	43749275	43749275	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43749275G>A	uc001zrs.2	-	12	1664	c.1516C>T	c.(1516-1518)CTA>TTA	p.L506L	TP53BP1_uc010udp.1_Silent_p.L506L|TP53BP1_uc001zrq.3_Silent_p.L511L|TP53BP1_uc001zrr.3_Silent_p.L511L|TP53BP1_uc010udq.1_Silent_p.L511L	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	506					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		GTCAAAGATAGCCCAAGATCC	0.403								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					25	70					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43814059	43814059	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43814059C>T	uc001zrt.2	+	4	855	c.388C>T	c.(388-390)CCT>TCT	p.P130S		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	130						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CCTTATCTCTCCTGAGCTTGG	0.552													30	67					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43814503	43814503	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43814503G>A	uc001zrt.2	+	4	1299	c.832G>A	c.(832-834)GAG>AAG	p.E278K		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	278						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CAAGATCTTGGAGGGCCTAGA	0.547													14	61					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43815292	43815292	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43815292G>A	uc001zrt.2	+	4	2088	c.1621G>A	c.(1621-1623)GAG>AAG	p.E541K		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	541	9 X 3 AA repeats of K-K-[DE].|9.					cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GATGAAGCGTGAGGAGAGGGC	0.552													33	117					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43815940	43815940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43815940G>A	uc001zrt.2	+	4	2736	c.2269G>A	c.(2269-2271)GAT>AAT	p.D757N		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	757						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GGAGATCCATGATGAGCCGGA	0.562													10	28					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43816702	43816702	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43816702C>T	uc001zrt.2	+	4	3498	c.3031C>T	c.(3031-3033)CAT>TAT	p.H1011Y		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1011						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CACACCCTTTCATCAGTCCCC	0.572													32	74					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43819304	43819304	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43819304G>A	uc001zrt.2	+	4	6100	c.5633G>A	c.(5632-5634)TGG>TAG	p.W1878*		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1878						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CCCTTCTCTTGGGGCACAGCC	0.657													13	34					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43819408	43819408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43819408G>A	uc001zrt.2	+	4	6204	c.5737G>A	c.(5737-5739)GAA>AAA	p.E1913K		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1913						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CCGCAAGGCTGAAGGGGAAAG	0.597													21	71					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43819490	43819490	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43819490G>A	uc001zrt.2	+	4	6286	c.5819G>A	c.(5818-5820)AGC>AAC	p.S1940N		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1940						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GCCAGCAAAAGCCATGCCACC	0.547													37	73					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43821264	43821264	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43821264C>T	uc001zrt.2	+	4	8060	c.7593C>T	c.(7591-7593)CTC>CTT	p.L2531L		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2531						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	AGGCAGCCCTCGACTCAGATG	0.587													62	124					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43821548	43821548	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43821548G>A	uc001zrt.2	+	4	8344	c.7877G>A	c.(7876-7878)GGA>GAA	p.G2626E		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2626						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GATCTTCGGGGAAAACGCTCA	0.657													32	66					0	0	1	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43827047	43827047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43827047G>A	uc001zrw.2	-	31	4310	c.4127C>T	c.(4126-4128)CCT>CTT	p.P1376L	PPIP5K1_uc001zrx.1_Missense_Mutation_p.P1349L|PPIP5K1_uc001zru.2_Missense_Mutation_p.P1351L|PPIP5K1_uc001zry.3_Missense_Mutation_p.P1351L|PPIP5K1_uc001zrv.2_Missense_Mutation_p.P1137L	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	1376					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						GACCTCCTCAGGGATCTCTTC	0.547													49	97					0	0	1	0	0
STRC	161497	broad.mit.edu	37	15	43893672	43893672	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43893672C>T	uc001zsf.2	-	24	4701	c.4623G>A	c.(4621-4623)CGG>CGA	p.R1541R	STRC_uc010bdl.2_Silent_p.R768R|STRC_uc001zse.2_Silent_p.R59R	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1541					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		CCTGTAGTTCCCGATCTCCTA	0.542													37	83					0	0	1	0	0
STRC	161497	broad.mit.edu	37	15	43893738	43893738	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43893738G>A	uc001zsf.2	-	24	4635	c.4557C>T	c.(4555-4557)CCC>CCT	p.P1519P	STRC_uc010bdl.2_Silent_p.P746P|STRC_uc001zse.2_Silent_p.P37P	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1519					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		ATCCCCGGGGGGGACCCCACA	0.358													21	60					0	0	1	0	0
STRC	161497	broad.mit.edu	37	15	43900332	43900332	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43900332G>A	uc001zsf.2	-	17	3705	c.3627C>T	c.(3625-3627)TTC>TTT	p.F1209F	STRC_uc010bdl.2_Silent_p.F436F|STRC_uc001zse.2_5'UTR	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1209					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		CCACTTCAAGGAAGTCTACCA	0.582													23	61					0	0	1	0	0
CKMT1A	548596	broad.mit.edu	37	15	43990917	43990917	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:43990917G>A	uc001zsn.2	+	9	1482	c.1090G>A	c.(1090-1092)GGC>AGC	p.G364S	CKMT1A_uc010uea.1_Missense_Mutation_p.G395S|CKMT1A_uc001zso.3_Missense_Mutation_p.G364S	NM_001015001	NP_001015001	P12532	KCRU_HUMAN	creatine kinase, mitochondrial 1A precursor	364	Phosphagen kinase C-terminal.				creatine metabolic process	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)	Creatine(DB00148)	TGCTGCCACAGGCGGTGTCTT	0.502													49	83					0	0	1	0	0
TRIM69	140691	broad.mit.edu	37	15	45050878	45050878	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45050878C>T	uc001zuf.2	+	5	1534	c.639C>T	c.(637-639)TTC>TTT	p.F213F	TRIM69_uc001zui.1_Silent_p.F9F|TRIM69_uc010bdy.1_Silent_p.F9F|TRIM69_uc001zug.1_Silent_p.F213F|TRIM69_uc001zuh.1_Silent_p.F54F	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	213	Potential.				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		TGCATCAGTTCCTGCACAGCA	0.458													20	51					0	0	1	0	0
C15orf43	145645	broad.mit.edu	37	15	45248981	45248981	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45248981G>A	uc001zuk.2	+	1	81	c.64_splice	c.e1+1	p.V22_splice		NM_152448	NP_689661	Q8NHR7	CO043_HUMAN	hypothetical protein LOC145645												0		all_cancers(109;3.68e-08)|all_epithelial(112;1.05e-06)|Lung NSC(122;1.42e-05)|all_lung(180;0.000112)|Melanoma(134;0.0192)		all cancers(107;7.64e-17)|GBM - Glioblastoma multiforme(94;2.03e-06)		CAATTCTGGGGTAGGAAGCTG	0.582													23	61					0	0	1	0	0
C15orf43	145645	broad.mit.edu	37	15	45249110	45249110	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45249110G>A	uc001zuk.2	+	2	98	c.81G>A	c.(79-81)ACG>ACA	p.T27T		NM_152448	NP_689661	Q8NHR7	CO043_HUMAN	hypothetical protein LOC145645	27											0		all_cancers(109;3.68e-08)|all_epithelial(112;1.05e-06)|Lung NSC(122;1.42e-05)|all_lung(180;0.000112)|Melanoma(134;0.0192)		all cancers(107;7.64e-17)|GBM - Glioblastoma multiforme(94;2.03e-06)		AAGGGGGAACGATCAGTGACC	0.587													9	70					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45387220	45387220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45387220C>T	uc010bea.2	-	32	4512	c.4309G>A	c.(4309-4311)GAG>AAG	p.E1437K	DUOX2_uc001zun.2_Missense_Mutation_p.E1437K	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1437	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TCGTTCTCCTCCACCTCTTGG	0.567													23	47					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45387767	45387767	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45387767C>T	uc010bea.2	-	31	4310	c.4107G>A	c.(4105-4107)GAG>GAA	p.E1369E	DUOX2_uc001zun.2_Silent_p.E1369E	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1369	Cytoplasmic (Potential).|FAD-binding FR-type.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CCTGATGGCCCTCTCCAAACG	0.562													23	60					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45388060	45388060	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45388060G>A	uc010bea.2	-	30	4249	c.4046C>T	c.(4045-4047)TCC>TTC	p.S1349F	DUOX2_uc001zun.2_Missense_Mutation_p.S1349F	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1349	Cytoplasmic (Potential).|FAD-binding FR-type.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		GCCCTTTGGGGATGAGTAGAT	0.632													7	47					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45392370	45392370	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45392370C>T	uc010bea.2	-	24	3265	c.3062G>A	c.(3061-3063)CGA>CAA	p.R1021Q	DUOX2_uc001zun.2_Missense_Mutation_p.R1021Q	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1021	Cytoplasmic (Potential).|Interaction with TXNDC11 (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TAGGAAGCCTCGCTGCATCTT	0.597													9	46					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45396248	45396248	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45396248G>A	uc010bea.2	-	20	2767	c.2564C>T	c.(2563-2565)TCC>TTC	p.S855F	DUOX2_uc001zun.2_Missense_Mutation_p.S855F	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	855	Cytoplasmic (Potential).|EF-hand 2.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		ATCCTCTGGGGAGCCTGGGAA	0.512													12	33					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45399639	45399639	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45399639C>T	uc010bea.2	-	14	1800	c.1597G>A	c.(1597-1599)GAA>AAA	p.E533K	DUOX2_uc001zun.2_Missense_Mutation_p.E533K	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	533	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CGGATGTCTTCAATCTCCTTC	0.552													42	102					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45402903	45402903	+	Silent	SNP	G	A	A	rs144183694	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45402903G>A	uc010bea.2	-	8	1091	c.888C>T	c.(886-888)ATC>ATT	p.I296I	DUOX2_uc001zun.2_Silent_p.I296I	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	296	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CATACACAGCGATGTTCTGAG	0.607													13	35					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45404008	45404008	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45404008C>T	uc010bea.2	-	5	674	c.471G>A	c.(469-471)TGG>TGA	p.W157*	DUOX2_uc001zun.2_Nonsense_Mutation_p.W157*|DUOXA2_uc001zuo.2_5'Flank|DUOXA2_uc010beb.2_5'Flank	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	157	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TCTCGGGGTCCCAGCGGCTCC	0.726													5	13					0	0	1	0	0
DUOXA1	90527	broad.mit.edu	37	15	45411507	45411507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45411507G>A	uc001zuq.1	-	6	858	c.829C>T	c.(829-831)CAC>TAC	p.H277Y	DUOXA1_uc010uem.1_Missense_Mutation_p.H232Y|DUOXA1_uc001zup.2_Missense_Mutation_p.H277Y|DUOXA1_uc010bec.2_Missense_Mutation_p.H277Y|DUOXA1_uc001zur.1_Missense_Mutation_p.H232Y|DUOXA1_uc010bed.1_Missense_Mutation_p.H232Y	NM_144565	NP_653166	Q1HG43	DOXA1_HUMAN	Numb-interacting protein	277	Cytoplasmic (Potential).				protein transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		all_cancers(109;6.02e-08)|all_epithelial(112;1.83e-06)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.82e-18)|GBM - Glioblastoma multiforme(94;4.39e-07)|COAD - Colon adenocarcinoma(120;0.0676)|Colorectal(133;0.0686)		TTCAGCCTGTGAGGCTGCATC	0.582													12	46					0	0	1	0	0
DUOX1	53905	broad.mit.edu	37	15	45430210	45430210	+	Missense_Mutation	SNP	G	A	A	rs138913762		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45430210G>A	uc001zus.1	+	11	1457	c.1111G>A	c.(1111-1113)GAG>AAG	p.E371K	DUOX1_uc001zut.1_Missense_Mutation_p.E371K|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	371	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CTGGAGCCGTGAGGTCCGAGC	0.383													14	62					0	0	1	0	0
DUOX1	53905	broad.mit.edu	37	15	45444226	45444226	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45444226G>A	uc001zus.1	+	25	3515	c.3169G>A	c.(3169-3171)GGG>AGG	p.G1057R	DUOX1_uc001zut.1_Missense_Mutation_p.G1057R|DUOX1_uc010bee.1_Missense_Mutation_p.G437R|DUOX1_uc001zuu.2_Missense_Mutation_p.G199R	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	1057	Helical; (Potential).|Interaction with TXNDC11 (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CATCGCTGGGGGGCTTTTCCT	0.602													9	29					0	0	1	0	0
SHF	90525	broad.mit.edu	37	15	45491118	45491118	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45491118G>A	uc001zuy.2	-	2	650	c.155C>T	c.(154-156)CCC>CTC	p.P52L		NM_138356	NP_612365	Q7M4L6	SHF_HUMAN	Src homology 2 domain containing F	52										ovary(1)	1		all_cancers(109;8.13e-11)|all_epithelial(112;6.29e-09)|Lung NSC(122;3.57e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.1e-16)|GBM - Glioblastoma multiforme(94;5.98e-06)		GGAGTTTAGGGGAGACGGCGT	0.602											OREG0023105	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	37					0	0	1	0	0
GATM	2628	broad.mit.edu	37	15	45656180	45656180	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45656180G>A	uc001zvc.2	-	8	1406	c.1077C>T	c.(1075-1077)TCC>TCT	p.S359S	GATM_uc001zvb.2_Silent_p.S230S|GATM_uc010uev.1_Silent_p.S412S	NM_001482	NP_001473	P50440	GATM_HUMAN	L-arginine:glycine amidinotransferase precursor	359					creatine biosynthetic process	mitochondrial inner membrane|mitochondrial intermembrane space	glycine amidinotransferase activity|protein binding				0		all_cancers(109;1.25e-09)|all_epithelial(112;5.56e-08)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.87e-16)|GBM - Glioblastoma multiforme(94;1.97e-06)	Creatine(DB00148)|Glycine(DB00145)|L-Ornithine(DB00129)	AGACATTCATGGAAAGCCATT	0.358													33	68					0	0	1	0	0
GATM	2628	broad.mit.edu	37	15	45669010	45669010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45669010C>T	uc001zvc.2	-	2	406	c.77G>A	c.(76-78)CGA>CAA	p.R26Q	GATM_uc001zvb.2_5'UTR|GATM_uc010uev.1_Missense_Mutation_p.R79Q	NM_001482	NP_001473	P50440	GATM_HUMAN	L-arginine:glycine amidinotransferase precursor	26					creatine biosynthetic process	mitochondrial inner membrane|mitochondrial intermembrane space	glycine amidinotransferase activity|protein binding				0		all_cancers(109;1.25e-09)|all_epithelial(112;5.56e-08)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.87e-16)|GBM - Glioblastoma multiforme(94;1.97e-06)	Creatine(DB00148)|Glycine(DB00145)|L-Ornithine(DB00129)	TGTCAAGGTTCGTCCAAGCTT	0.488													6	21					0	0	1	0	0
SPATA5L1	79029	broad.mit.edu	37	15	45695524	45695524	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45695524C>T	uc001zve.2	+	1	1006	c.897C>T	c.(895-897)CTC>CTT	p.L299L	uc001zvd.2_5'Flank|SPATA5L1_uc001zvf.2_RNA	NM_024063	NP_076968	Q9BVQ7	SPA5L_HUMAN	spermatogenesis associated 5-like 1	299						cytoplasm	ATP binding|nucleoside-triphosphatase activity			ovary(3)|skin(1)	4		Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;7.31e-17)|GBM - Glioblastoma multiforme(94;6.28e-07)		GACCCAGCCTCCTCTTCCTGG	0.726													5	13					0	0	1	0	0
C15orf48	84419	broad.mit.edu	37	15	45724270	45724270	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45724270C>T	uc001zvg.2	+	4	241	c.123C>T	c.(121-123)ATC>ATT	p.I41I	C15orf48_uc001zvh.2_Silent_p.I41I|MIR147B_hsa-mir-147b|MI0005544_5'Flank	NM_197955	NP_922946	Q9C002	NMES1_HUMAN	normal mucosa of esophagus specific 1	41						nucleus				ovary(1)	1		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.67e-16)|GBM - Glioblastoma multiforme(94;1.71e-06)		TTAATTTTAGCCTTGATCGAA	0.318													8	36					0	0	1	0	0
SQRDL	58472	broad.mit.edu	37	15	45968358	45968358	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:45968358G>A	uc001zvt.2	+	7	903	c.714G>A	c.(712-714)GGG>GGA	p.G238G	SQRDL_uc001zvu.2_Silent_p.G238G|SQRDL_uc001zvv.2_Silent_p.G238G	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	238							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		CCATTTTCGGGGTTAAGAAGT	0.443													95	191					0	0	1	0	0
SLC24A5	283652	broad.mit.edu	37	15	48431226	48431226	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48431226C>A	uc001zwe.2	+	7	1005	c.932C>A	c.(931-933)TCC>TAC	p.S311Y	SLC24A5_uc010bel.2_Missense_Mutation_p.S251Y|uc001zwf.1_5'Flank|SLC24A5_uc001zwk.2_5'Flank	NM_205850	NP_995322	Q71RS6	NCKX5_HUMAN	solute carrier family 24, member 5 precursor	311	Helical; Name=6; (Potential).				response to stimulus	integral to membrane|melanosome|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity				0		all_lung(180;0.00217)		all cancers(107;3.29e-10)|GBM - Glioblastoma multiforme(94;7.32e-07)		TGGGTATTATCCCTTCCTATT	0.318													29	71					2.4375e-19	2.45038e-19	1	1	0
FBN1	2200	broad.mit.edu	37	15	48704860	48704860	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48704860G>A	uc001zwx.1	-	65	8460	c.8132C>T	c.(8131-8133)TCC>TTC	p.S2711F	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2711					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		AGCCTCTGGGGAGAGTGAATT	0.532													59	144					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48719832	48719832	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48719832G>A	uc001zwx.1	-	58	7464	c.7136C>T	c.(7135-7137)CCT>CTT	p.P2379L	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2379	TB 9.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CCCCTGGAAAGGGCAGATCTC	0.527													8	79					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48729211	48729211	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48729211G>A	uc001zwx.1	-	53	6771	c.6443C>T	c.(6442-6444)TCC>TTC	p.S2148F	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2148	EGF-like 36; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GCAGCGATAGGAACCATCTGT	0.358													25	71					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48729266	48729266	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48729266C>T	uc001zwx.1	-	53	6716	c.6388G>A	c.(6388-6390)GAA>AAA	p.E2130K	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2130	EGF-like 36; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TCTTTGCATTCGTCCATATCT	0.343													16	53					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48736816	48736816	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48736816C>T	uc001zwx.1	-	49	6287	c.5959G>A	c.(5959-5961)GGT>AGT	p.G1987S	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1987	EGF-like 34; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TGACAGGTACCTGGTGCACAT	0.423													33	125					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48736830	48736830	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48736830C>T	uc001zwx.1	-	49	6273	c.5945G>A	c.(5944-5946)AGA>AAA	p.R1982K	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1982	EGF-like 34; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TGCACATTTTCTGGGTTCTAG	0.398													49	106					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48741088	48741088	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48741088G>A	uc001zwx.1	-	46	5876	c.5548C>T	c.(5548-5550)CGT>TGT	p.R1850C	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1850	EGF-like 31; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CATTCATTACGATCTGTAAAT	0.348													17	36					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48762861	48762861	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48762861C>T	uc001zwx.1	-	36	4757	c.4429G>A	c.(4429-4431)GAA>AAA	p.E1477K	FBN1_uc010beo.1_5'Flank	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1477	EGF-like 25; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CTGTCCAGTTCGTAGCCTATC	0.567													28	60					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48764779	48764779	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48764779G>A	uc001zwx.1	-	35	4633	c.4305C>T	c.(4303-4305)TTC>TTT	p.F1435F		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1435	EGF-like 24; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CACTGGGCACGAAGCCCATGT	0.522													58	116					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48796017	48796017	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48796017C>T	uc001zwx.1	-	17	2408	c.2080G>A	c.(2080-2082)GAA>AAA	p.E694K		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	694	TB 3.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TGGCAAGGTTCCCCAAATGCA	0.493													28	71					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48797262	48797262	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48797262G>A	uc001zwx.1	-	16	2248	c.1920C>T	c.(1918-1920)TTC>TTT	p.F640F		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	640	EGF-like 10; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CCAGTCCAGGGAAGCATTCAC	0.502													50	132					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48802271	48802271	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48802271G>A	uc001zwx.1	-	14	2012	c.1684C>T	c.(1684-1686)CAT>TAT	p.H562Y		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	562	EGF-like 8; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CGTGTAACATGAAAGCCCGCA	0.408													25	66					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48813009	48813009	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:48813009G>A	uc001zwx.1	-	10	1322	c.994C>T	c.(994-996)CGC>TGC	p.R332C		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	332					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TATCCTGGGCGAACATCTGAG	0.517													22	53					0	0	1	0	0
CEP152	22995	broad.mit.edu	37	15	49031038	49031038	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:49031038G>A	uc001zwy.2	-	26	4407	c.4373C>T	c.(4372-4374)CCT>CTT	p.P1458L	CEP152_uc001zwz.2_Missense_Mutation_p.P1514L	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	1458					centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		TGATTCAGAAGGACCAGGGGT	0.398													26	66					0	0	1	0	0
SHC4	399694	broad.mit.edu	37	15	49160046	49160046	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:49160046G>A	uc001zxb.1	-	6	1344	c.915C>T	c.(913-915)GCC>GCT	p.A305A	SHC4_uc010uey.1_Silent_p.A62A|SHC4_uc010uez.1_Silent_p.A19A	NM_203349	NP_976224	Q6S5L8	SHC4_HUMAN	rai-like protein	305	PID.				intracellular signal transduction	cell junction|postsynaptic membrane				ovary(3)|pancreas(2)	5		all_lung(180;0.00466)		all cancers(107;9.4e-08)|GBM - Glioblastoma multiforme(94;5.94e-07)		TAGCTACGTAGGCAACATAGT	0.323													15	89					0	0	1	0	0
COPS2	9318	broad.mit.edu	37	15	49431756	49431756	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:49431756G>A	uc001zxf.2	-	4	420	c.341C>T	c.(340-342)TCT>TTT	p.S114F	COPS2_uc001zxh.2_Missense_Mutation_p.S114F|COPS2_uc010ufa.1_Missense_Mutation_p.S50F	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	114					cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		ATCAAGAATAGAATTAATGGA	0.328													34	89					0	0	1	0	0
FGF7	2252	broad.mit.edu	37	15	49716709	49716709	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:49716709G>A	uc001zxn.2	+	2	744	c.215G>A	c.(214-216)CGA>CAA	p.R72Q	C15orf33_uc001zxl.2_Intron|C15orf33_uc001zxm.2_Intron	NM_002009	NP_002000	P21781	FGF7_HUMAN	fibroblast growth factor 7 precursor	72					actin cytoskeleton reorganization|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization at cell surface|secretion by lung epithelial cell involved in lung growth		chemoattractant activity|growth factor activity				0		all_lung(180;0.00391)		all cancers(107;3.61e-08)|GBM - Glioblastoma multiforme(94;4.06e-05)	Palifermin(DB00039)	CTCTTCTGTCGAACACAGTGG	0.408													30	68					0	0	1	0	0
C15orf33	196951	broad.mit.edu	37	15	49800440	49800440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:49800440C>T	uc001zxl.2	-	11	1274	c.980G>A	c.(979-981)AGA>AAA	p.R327K	C15orf33_uc001zxm.2_Missense_Mutation_p.R293K	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	327										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		GTCTGCAATTCTTTCCTTTAC	0.348													8	123					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50158630	50158630	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50158630C>T	uc001zxu.2	-	26	3221	c.3079G>A	c.(3079-3081)GGG>AGG	p.G1027R	ATP8B4_uc010ber.2_Missense_Mutation_p.G900R|ATP8B4_uc010ufd.1_Missense_Mutation_p.G837R|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxt.2_Missense_Mutation_p.G30R	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	1027	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		GCAATGCTCCCCCAGATGAAG	0.383													31	89					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50223468	50223468	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50223468C>T	uc001zxu.2	-	16	1632	c.1490G>A	c.(1489-1491)GGG>GAG	p.G497E	ATP8B4_uc010ber.2_Missense_Mutation_p.G370E|ATP8B4_uc010ufd.1_Intron|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	497	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		CACTAGAGCCCCTTCATCAGG	0.388													11	49					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50264894	50264894	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50264894C>T	uc001zxu.2	-	13	1270	c.1128G>A	c.(1126-1128)ACG>ACA	p.T376T	ATP8B4_uc010ber.2_Silent_p.T249T|ATP8B4_uc010ufd.1_Silent_p.T249T|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	376	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TGAGCGTGGTCGTTCGAGCCA	0.418													16	44					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50279643	50279643	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50279643C>T	uc001zxu.2	-	10	835	c.693G>A	c.(691-693)CTG>CTA	p.L231L	ATP8B4_uc010ber.2_Silent_p.L104L|ATP8B4_uc010ufd.1_Silent_p.L104L|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	231	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TGCAGCCTCTCAGGATTATCT	0.448													29	98					0	0	1	0	0
SLC27A2	11001	broad.mit.edu	37	15	50528136	50528136	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50528136G>A	uc001zxw.2	+	10	1938	c.1706G>A	c.(1705-1707)GGA>GAA	p.G569E	SLC27A2_uc010bes.2_Missense_Mutation_p.G516E|SLC27A2_uc001zxx.2_Missense_Mutation_p.G334E	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	569	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		GAGATCACTGGAACTTTTAAA	0.428													17	149					0	0	1	0	0
HDC	3067	broad.mit.edu	37	15	50534694	50534694	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50534694G>A	uc001zxz.2	-	12	1858	c.1752C>T	c.(1750-1752)TCC>TCT	p.S584S	HDC_uc001zxy.2_Silent_p.S327S|HDC_uc010uff.1_Silent_p.S551S	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	584					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TGCAACTGAGGGAGCGCACCG	0.542													75	228					0	0	1	0	0
HDC	3067	broad.mit.edu	37	15	50534736	50534736	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50534736G>A	uc001zxz.2	-	12	1816	c.1710C>T	c.(1708-1710)TTC>TTT	p.F570F	HDC_uc001zxy.2_Silent_p.F313F|HDC_uc010uff.1_Silent_p.F537F	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	570					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	ACAAGTAACTGAACAGGAAGG	0.537													53	152					0	0	1	0	0
HDC	3067	broad.mit.edu	37	15	50534962	50534962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50534962C>T	uc001zxz.2	-	12	1590	c.1484G>A	c.(1483-1485)AGG>AAG	p.R495K	HDC_uc001zxy.2_Missense_Mutation_p.R238K|HDC_uc010uff.1_Missense_Mutation_p.R462K	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	495					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TCTGGCACCCCTGATTTGGGA	0.572													16	42					0	0	1	0	0
HDC	3067	broad.mit.edu	37	15	50546780	50546780	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50546780C>T	uc001zxz.2	-	5	629	c.523G>A	c.(523-525)GAT>AAT	p.D175N	HDC_uc001zxy.2_5'Flank|HDC_uc010uff.1_Missense_Mutation_p.D175N|HDC_uc010bet.1_Missense_Mutation_p.D96N|HDC_uc010beu.1_Missense_Mutation_p.D175N	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	175					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TCATCAGCATCGGGCTCAGAC	0.547													26	50					0	0	1	0	0
HDC	3067	broad.mit.edu	37	15	50557805	50557805	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50557805C>T	uc001zxz.2	-	1	122	c.16G>A	c.(16-18)GAG>AAG	p.E6K	HDC_uc010uff.1_Missense_Mutation_p.E6K|HDC_uc010bet.1_Missense_Mutation_p.E6K|HDC_uc010beu.1_Missense_Mutation_p.E6K	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	6					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TCTCTGTACTCCTCAGGCTCC	0.617													15	28					0	0	1	0	0
USP8	9101	broad.mit.edu	37	15	50785001	50785001	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50785001C>T	uc001zym.3	+	16	2838	c.2338C>T	c.(2338-2340)CGT>TGT	p.R780C	USP8_uc001zyl.3_Missense_Mutation_p.R780C|USP8_uc001zyn.3_Missense_Mutation_p.R780C|USP8_uc010ufh.1_Missense_Mutation_p.R674C|uc001zyo.1_RNA|USP8_uc001zyp.3_5'Flank	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	780					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		TACTGGACTTCGTAACTTAGG	0.403													38	107					0	0	1	0	0
USP50	373509	broad.mit.edu	37	15	50833302	50833302	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50833302C>T	uc001zyq.3	-	4	799	c.619G>A	c.(619-621)GAA>AAA	p.E207K		NM_203494	NP_987090	E9PP86	E9PP86_HUMAN	ubiquitin specific protease 50	202					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			lung(1)|breast(1)	2				all cancers(107;0.000519)|GBM - Glioblastoma multiforme(94;0.00288)		GTGAAGACTTCGTTCTTGTAG	0.443													15	36					0	0	1	0	0
TRPM7	54822	broad.mit.edu	37	15	50884459	50884459	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:50884459G>A	uc001zyt.3	-	26	4237	c.3973C>T	c.(3973-3975)CCC>TCC	p.P1325S	TRPM7_uc010bew.1_Missense_Mutation_p.P1325S	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1325	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TTACACTGGGGATCTTTGTCA	0.378													39	86					0	0	1	0	0
AP4E1	23431	broad.mit.edu	37	15	51294740	51294740	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51294740C>T	uc001zyx.1	+	21	3325	c.3295C>T	c.(3295-3297)CCC>TCC	p.P1099S	AP4E1_uc010bex.1_RNA	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	1099					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		CCCATCCATCCCCTGCTTACT	0.343													59	155					0	0	1	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350174	51350174	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51350174G>A	uc001zyy.2	-	3	883	c.783C>T	c.(781-783)TTC>TTT	p.F261F		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	261											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		GGGTGGAGAGGAACTCCACAT	0.517													26	61					0	0	1	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350254	51350254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51350254C>T	uc001zyy.2	-	3	803	c.703G>A	c.(703-705)GAA>AAA	p.E235K		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	235											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		TGCACCAGTTCATGCACCAGG	0.552													19	40					0	0	1	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350363	51350363	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51350363C>T	uc001zyy.2	-	3	694	c.594G>A	c.(592-594)AAG>AAA	p.K198K		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	198											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		GGTTCAGCTTCTTCCGGAACT	0.488													13	107					0	0	1	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350414	51350414	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51350414C>T	uc001zyy.2	-	3	643	c.543G>A	c.(541-543)CGG>CGA	p.R181R		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	181											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		ACTGGTTGTTCCGGTAGAGGA	0.468													46	105					0	0	1	0	0
CYP19A1	1588	broad.mit.edu	37	15	51503250	51503250	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51503250G>A	uc001zyz.3	-	11	1518	c.1267C>T	c.(1267-1269)CCT>TCT	p.P423S	CYP19A1_uc001zza.3_Missense_Mutation_p.P423S	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	423					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	TACCTATAAGGAACCTATGAA	0.443													12	39					0	0	1	0	0
CYP19A1	1588	broad.mit.edu	37	15	51507373	51507373	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51507373G>A	uc001zyz.3	-	9	1166	c.915C>T	c.(913-915)ATC>ATT	p.I305I	CYP19A1_uc001zza.3_Silent_p.I305I|CYP19A1_uc001zzb.2_Silent_p.I305I	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	305					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	CAGGAGCTGCGATCAGCATTT	0.403													20	78					0	0	1	0	0
GLDN	342035	broad.mit.edu	37	15	51687149	51687149	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51687149G>A	uc002aba.2	+	5	828	c.659G>A	c.(658-660)GGA>GAA	p.G220E	GLDN_uc002abb.2_Missense_Mutation_p.G96E	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	220	Collagen-like 2.|Extracellular (Potential).				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		GGTGACAAAGGAGATGTGTCC	0.582													10	25					0	0	1	0	0
GLDN	342035	broad.mit.edu	37	15	51696586	51696586	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51696586G>A	uc002aba.2	+	10	1460	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K	GLDN_uc002abb.2_Missense_Mutation_p.E307K	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	431	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		AGCTGTAGATGAAAAGGGCCT	0.418													60	153					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51758498	51758499	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51758498_51758499GG>AA	uc002abf.2	-	30	7624_7625	c.7399_7400CC>TT	c.(7399-7401)CCT>TTT	p.P2467F	DMXL2_uc002abd.2_Missense_Mutation_p.P538F|DMXL2_uc010ufy.1_Missense_Mutation_p.P2468F|DMXL2_uc010bfa.2_Missense_Mutation_p.P1831F	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2467						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ATCAGACAAAGGAAGAAATGGC	0.218													28	84					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51792266	51792266	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51792266G>A	uc002abf.2	-	18	3380	c.3155C>T	c.(3154-3156)CCT>CTT	p.P1052L	DMXL2_uc010ufy.1_Missense_Mutation_p.P1052L|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1052						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ATTCATCAAAGGCCATCTCTT	0.413													25	85					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51795149	51795149	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51795149G>A	uc002abf.2	-	17	3071	c.2846C>T	c.(2845-2847)TCT>TTT	p.S949F	DMXL2_uc010ufy.1_Missense_Mutation_p.S949F|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	949						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CACACTAGGAGAGGTTTCTGG	0.418													23	125					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51839476	51839476	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51839476G>A	uc002abf.2	-	7	922	c.697C>T	c.(697-699)CGA>TGA	p.R233*	DMXL2_uc010ufy.1_Nonsense_Mutation_p.R233*|DMXL2_uc010bfa.2_Nonsense_Mutation_p.R233*	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	233	WD 3.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		GTCACAGCTCGGGGATGTGCC	0.383													28	82					0	0	1	0	0
SCG3	29106	broad.mit.edu	37	15	51974720	51974720	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51974720C>T	uc002abh.2	+	2	497	c.89C>T	c.(88-90)TCT>TTT	p.S30F	SCG3_uc010ufz.1_Intron	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	30					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		CTAGACAAATCTCTACATAAT	0.244													16	37					0	0	1	0	0
SCG3	29106	broad.mit.edu	37	15	51974734	51974734	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51974734G>A	uc002abh.2	+	2	511	c.103G>A	c.(103-105)GAA>AAA	p.E35K	SCG3_uc010ufz.1_Intron	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	35					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		ACATAATAGAGAATTAAGTGC	0.239													4	53					0	0	1	0	0
SCG3	29106	broad.mit.edu	37	15	51975321	51975321	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51975321G>A	uc002abh.2	+	3	589	c.181G>A	c.(181-183)GAA>AAA	p.E61K	SCG3_uc010ufz.1_5'UTR	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	61					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		ATATCCTCCAGGTAAAAAGAA	0.279													56	118					0	0	1	0	0
SCG3	29106	broad.mit.edu	37	15	51975425	51975425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51975425C>T	uc002abh.2	+	4	599	c.191C>T	c.(190-192)CCA>CTA	p.P64L	SCG3_uc010ufz.1_5'UTR	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	64					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		GAAAACAAGCCAGGTCAGAGC	0.338													91	216					0	0	1	0	0
SCG3	29106	broad.mit.edu	37	15	51984482	51984482	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51984482G>A	uc002abh.2	+	7	1225	c.817G>A	c.(817-819)GAA>AAA	p.E273K	SCG3_uc010ufz.1_Missense_Mutation_p.E41K	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	273				EEL -> RDF (in Ref. 1; AAD44483).	platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		CAACTTTGAGGAACTCCAATA	0.383													53	89					0	0	1	0	0
SCG3	29106	broad.mit.edu	37	15	51993386	51993386	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:51993386G>A	uc002abh.2	+	10	1560	c.1152G>A	c.(1150-1152)AAG>AAA	p.K384K	SCG3_uc010ufz.1_Silent_p.K152K	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	384					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		GAAGCTTGAAGGATTCCACAA	0.423													34	83					0	0	1	0	0
MAPK6	5597	broad.mit.edu	37	15	52356461	52356461	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:52356461C>T	uc002abp.2	+	6	2224	c.1430C>T	c.(1429-1431)TCC>TTC	p.S477F		NM_002748	NP_002739	Q16659	MK06_HUMAN	mitogen-activated protein kinase 6	477					cell cycle		ATP binding|MAP kinase activity			lung(3)|ovary(1)	4				all cancers(107;0.0028)		ATAGATCTTTCCAATTGGAAA	0.348													9	35					0	0	1	0	0
BCL2L10	10017	broad.mit.edu	37	15	52404827	52404827	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:52404827C>T	uc002abq.2	-	1	146	c.97G>A	c.(97-99)GAA>AAA	p.E33K		NM_020396	NP_065129	Q9HD36	B2L10_HUMAN	BCL2-like 10 (apoptosis facilitator)	23					activation of caspase activity|anti-apoptosis|female gamete generation|spermatogenesis	cytosol|integral to membrane|membrane fraction|mitochondrion|nuclear membrane	protein binding				0				all cancers(107;0.0148)		GTGCCGGGTTCCCGGGCGCAG	0.716													3	5					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52498066	52498066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:52498066C>T	uc010bff.2	-	37	4621	c.4484G>A	c.(4483-4485)CGA>CAA	p.R1495Q	MYO5C_uc010uga.1_RNA|uc002abv.2_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1495	Dilute.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		ATGATATATTCGTATAGCCAC	0.303													17	61					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52539740	52539740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:52539740G>A	uc010bff.2	-	15	1933	c.1796C>T	c.(1795-1797)CCT>CTT	p.P599L	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	599	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TGAACCAAAAGGAGAAGGAGG	0.438													30	79					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52556489	52556489	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:52556489G>A	uc010bff.2	-	9	1082	c.945C>T	c.(943-945)TTC>TTT	p.F315F	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_Missense_Mutation_p.S215L	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	315	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		AATCCTCCTTGAAACCTAAAA	0.443													11	31					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52571156	52571156	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:52571156G>A	uc010bff.2	-	4	500	c.363C>T	c.(361-363)ATC>ATT	p.I121I	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_Silent_p.I84I|MIR1266_hsa-mir-1266|MI0006403_5'Flank	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	121	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		AGGCGTGGATGATGGCATCTC	0.493													40	79					0	0	1	0	0
MYO5A	4644	broad.mit.edu	37	15	52708472	52708472	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:52708472A>G	uc002aby.2	-	5	726	c.482T>C	c.(481-483)GTA>GCA	p.V161A	MYO5A_uc002abx.3_Missense_Mutation_p.V161A|MYO5A_uc010uge.1_Missense_Mutation_p.V30A	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	161	Myosin head-like.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		CTCTCCACTTACGATGATGGA	0.393													31	83					0	0	1	0	0
KIAA1370	56204	broad.mit.edu	37	15	52897398	52897398	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:52897398G>A	uc002acg.3	-	7	2545	c.2392C>T	c.(2392-2394)CAT>TAT	p.H798Y	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Missense_Mutation_p.H710Y|KIAA1370_uc010ugf.1_Missense_Mutation_p.H805Y	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	798											0				all cancers(107;0.0803)		TCCAAGGAATGAAAATTATGT	0.333													52	134					0	0	1	0	0
KIAA1370	56204	broad.mit.edu	37	15	52901670	52901670	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:52901670C>T	uc002acg.3	-	6	1594	c.1441G>A	c.(1441-1443)GAG>AAG	p.E481K	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Missense_Mutation_p.E393K|KIAA1370_uc010ugf.1_Missense_Mutation_p.E488K	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	481											0				all cancers(107;0.0803)		TCTTGCCGCTCCTGGAGTAAA	0.428													12	164					0	0	1	0	0
WDR72	256764	broad.mit.edu	37	15	53809900	53809900	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:53809900G>A	uc002acj.2	-	20	3347	c.3305C>T	c.(3304-3306)TCT>TTT	p.S1102F	WDR72_uc010bfh.1_RNA	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	1102										lung(1)|skin(1)	2				all cancers(107;0.0511)		TTCCATTTAAGACACCTTGCA	0.368													37	99					0	0	1	0	0
WDR72	256764	broad.mit.edu	37	15	53907746	53907746	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:53907746C>T	uc002acj.2	-	15	2699	c.2657G>A	c.(2656-2658)AGA>AAA	p.R886K	WDR72_uc010bfi.1_Missense_Mutation_p.R886K	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	886										lung(1)|skin(1)	2				all cancers(107;0.0511)		TTCCAATCCTCTTGGAATTCC	0.313													13	69					0	0	1	0	0
WDR72	256764	broad.mit.edu	37	15	53907760	53907760	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:53907760C>T	uc002acj.2	-	15	2685	c.2643G>A	c.(2641-2643)CAG>CAA	p.Q881Q	WDR72_uc010bfi.1_Silent_p.Q881Q	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	881										lung(1)|skin(1)	2				all cancers(107;0.0511)		GAATTCCAACCTGATTTGGAA	0.318													22	67					0	0	1	0	0
WDR72	256764	broad.mit.edu	37	15	53908220	53908220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:53908220C>T	uc002acj.2	-	15	2225	c.2183G>A	c.(2182-2184)AGA>AAA	p.R728K	WDR72_uc010bfi.1_Missense_Mutation_p.R728K	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	728										lung(1)|skin(1)	2				all cancers(107;0.0511)		TTTACTTTTTCTCAGTGTCAG	0.468													26	80					0	0	1	0	0
WDR72	256764	broad.mit.edu	37	15	53997401	53997401	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:53997401G>A	uc002acj.2	-	11	1174	c.1132C>T	c.(1132-1134)CAA>TAA	p.Q378*	WDR72_uc010bfi.1_Nonsense_Mutation_p.Q378*	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	378										lung(1)|skin(1)	2				all cancers(107;0.0511)		AAATTATCTTGAAGAGTCCAG	0.353													23	72					0	0	1	0	0
WDR72	256764	broad.mit.edu	37	15	54015097	54015097	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54015097C>T	uc002acj.2	-	3	204	c.162G>A	c.(160-162)GCG>GCA	p.A54A	WDR72_uc010bfi.1_Silent_p.A54A	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	54	WD 1.									lung(1)|skin(1)	2				all cancers(107;0.0511)		GGAGTTCTTTCGCTGAAATCT	0.353													16	136					0	0	1	0	0
WDR72	256764	broad.mit.edu	37	15	54025254	54025254	+	Silent	SNP	C	T	T	rs148643501	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54025254C>T	uc002acj.2	-	2	135	c.93G>A	c.(91-93)ACG>ACA	p.T31T	WDR72_uc010bfi.1_Silent_p.T31T	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	31	WD 1.									lung(1)|skin(1)	2				all cancers(107;0.0511)		CAGTCACAATCGTTCGCTGGT	0.512													40	110					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54305645	54305645	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54305645G>A	uc002ack.2	+	1	545	c.545G>A	c.(544-546)CGA>CAA	p.R182Q		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	182					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGAGCTTTACGAAAACTGAGA	0.458													39	98					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54305718	54305718	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54305718C>T	uc002ack.2	+	1	618	c.618C>T	c.(616-618)TCC>TCT	p.S206S		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	206					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TGAAAAAATCCTGGGGAATAA	0.438													39	112					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54306010	54306010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54306010G>A	uc002ack.2	+	1	910	c.910G>A	c.(910-912)GAC>AAC	p.D304N		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	304					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGAAACTAGAGACATCCATGA	0.428													42	141					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54306200	54306200	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54306200G>A	uc002ack.2	+	1	1100	c.1100G>A	c.(1099-1101)AGA>AAA	p.R367K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	367					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGACACCAGAGAGACTGCCCA	0.383													5	66					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54306412	54306412	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54306412G>A	uc002ack.2	+	1	1312	c.1312G>A	c.(1312-1314)GAG>AAG	p.E438K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	438					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GTCTACTCCAGAGCCAAAAAT	0.408													39	71					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54306867	54306867	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54306867G>A	uc002ack.2	+	1	1767	c.1767G>A	c.(1765-1767)AGG>AGA	p.R589R		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	589					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TATGGCAGAGGAAACAGGAAG	0.463													26	51					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54306918	54306918	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54306918G>A	uc002ack.2	+	1	1818	c.1818G>A	c.(1816-1818)TTG>TTA	p.L606L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	606					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ACCAGCATTTGAATGGAGGTG	0.502													16	99					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54307109	54307109	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54307109C>T	uc002ack.2	+	1	2009	c.2009C>T	c.(2008-2010)TCA>TTA	p.S670L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	670					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGCTTGGATTCATCCACCCAG	0.413													30	69					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54307795	54307795	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54307795G>A	uc002ack.2	+	1	2695	c.2695G>A	c.(2695-2697)GAT>AAT	p.D899N		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	899					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TACTGAAACAGATGAACAAAT	0.378													31	100					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54308037	54308037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54308037C>T	uc002ack.2	+	1	2937	c.2937C>T	c.(2935-2937)GCC>GCT	p.A979A		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	979	Potential.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTTTAAGGGCCTATAAAAAGC	0.383													4	11					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54435228	54435228	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54435228G>A	uc002ack.2	+	2	2997	c.2997G>A	c.(2995-2997)GTG>GTA	p.V999V		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	999					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GCAGTTCTGTGGATGAAAAGG	0.328													23	78					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54586243	54586243	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54586243G>A	uc002ack.2	+	9	3969	c.3969G>A	c.(3967-3969)ATG>ATA	p.M1323I	UNC13C_uc002acl.2_Missense_Mutation_p.M153I	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1323					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GTGGAGAAATGGATGTCTGGT	0.343													19	228					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54792345	54792345	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54792345G>A	uc002ack.2	+	19	5129	c.5129G>A	c.(5128-5130)GGA>GAA	p.G1710E		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1710	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TTCCTTCATGGAGCACTGGGA	0.353													6	24					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54841886	54841886	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54841886G>A	uc002ack.2	+	26	5874	c.5874G>A	c.(5872-5874)CTG>CTA	p.L1958L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1958	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TATCCAAACTGAAGGTAATAA	0.358													41	83					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54914527	54914527	+	Missense_Mutation	SNP	C	T	T	rs141439711	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54914527C>T	uc002ack.2	+	29	6109	c.6109C>T	c.(6109-6111)CGT>TGT	p.R2037C	UNC13C_uc002acm.2_5'UTR	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2037					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATTTTCAGGTCGTTCCTCCAA	0.398													28	61					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54914569	54914569	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54914569G>A	uc002ack.2	+	29	6151	c.6151G>A	c.(6151-6153)GAC>AAC	p.D2051N	UNC13C_uc002acm.2_5'UTR	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2051	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TGTTCATGTGGACATCACTGC	0.443													32	65					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54919034	54919034	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:54919034G>A	uc002ack.2	+	31	6368	c.6368G>A	c.(6367-6369)GGA>GAA	p.G2123E	UNC13C_uc002acm.2_Missense_Mutation_p.G44E	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2123	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGCATTCTCGGAAAGGAAAAT	0.284													8	35					0	0	1	0	0
DYX1C1	161582	broad.mit.edu	37	15	55727241	55727241	+	Silent	SNP	C	T	T	rs138026922		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:55727241C>T	uc002adc.2	-	8	1277	c.909G>A	c.(907-909)ACG>ACA	p.T303T	CCPG1_uc002acy.2_5'UTR|DYX1C1_uc010ugh.1_Intron|DYX1C1_uc010ugi.1_RNA|DYX1C1_uc002adb.2_Silent_p.T303T|DYX1C1_uc002add.2_Silent_p.T303T	NM_130810	NP_570722	Q8WXU2	DYXC1_HUMAN	dyslexia susceptibility 1 candidate 1 isoform a	303	TPR 1.				neuron migration|regulation of estrogen receptor signaling pathway|regulation of proteasomal protein catabolic process	cytoplasm|nucleus	estrogen receptor binding			skin(1)	1				all cancers(107;0.0118)|GBM - Glioblastoma multiforme(80;0.171)		AATAGTTTTCCGTTGCAAACA	0.318													18	62					0	0	1	0	0
PYGO1	26108	broad.mit.edu	37	15	55838477	55838477	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:55838477G>A	uc010bfl.1	-	3	1060	c.1004C>T	c.(1003-1005)TCG>TTG	p.S335L	PYGO1_uc002adf.1_Missense_Mutation_p.S335L	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	335					Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		GTCAGAAGACGAATGGCCATG	0.473													96	213					0	0	1	0	0
PYGO1	26108	broad.mit.edu	37	15	55838615	55838615	+	Missense_Mutation	SNP	G	A	A	rs79362849		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:55838615G>A	uc010bfl.1	-	3	922	c.866C>T	c.(865-867)TCA>TTA	p.S289L	PYGO1_uc002adf.1_Missense_Mutation_p.S289L	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	289	Asn-rich.				Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		AGTGCTACTTGAACGGCTGTT	0.423													69	347					0	0	1	0	0
PYGO1	26108	broad.mit.edu	37	15	55839150	55839150	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:55839150G>A	uc010bfl.1	-	3	387	c.331C>T	c.(331-333)CCC>TCC	p.P111S	PYGO1_uc002adf.1_Missense_Mutation_p.P111S	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	111	Pro-rich.				Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		ATTCTTGGGGGAACGTGAGGT	0.473													14	133					0	0	1	0	0
PYGO1	26108	broad.mit.edu	37	15	55839201	55839201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:55839201C>T	uc010bfl.1	-	3	336	c.280G>A	c.(280-282)GGT>AGT	p.G94S	PYGO1_uc002adf.1_Missense_Mutation_p.G94S	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	94	Pro-rich.				Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		CCAGGATAACCAGGGCCAAGA	0.443													32	136					0	0	1	0	0
PYGO1	26108	broad.mit.edu	37	15	55839341	55839341	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:55839341G>A	uc010bfl.1	-	3	196	c.140C>T	c.(139-141)CCT>CTT	p.P47L	PYGO1_uc002adf.1_Missense_Mutation_p.P47L	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	47	Pro-rich.				Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		AGGGAAAGAAGGTCCCTGAAA	0.363													10	60					0	0	1	0	0
PRTG	283659	broad.mit.edu	37	15	55912417	55912417	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:55912417G>A	uc002adg.2	-	20	3294	c.3246C>T	c.(3244-3246)ACC>ACT	p.T1082T		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	1082					multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TTAATACAGTGGTGCCTGGCT	0.468													32	87					0	0	1	0	0
NEDD4	4734	broad.mit.edu	37	15	56207630	56207630	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:56207630G>A	uc002adj.2	-	1	1700	c.1400C>T	c.(1399-1401)TCC>TTC	p.S467F	NEDD4_uc002adl.2_Intron|NEDD4_uc002adi.2_Missense_Mutation_p.S467F|NEDD4_uc010ugj.1_Missense_Mutation_p.S467F|NEDD4_uc010bfm.2_Missense_Mutation_p.S467F|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	467					development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		GGATAGACAGGAAATATTTGG	0.358													42	121					0	0	1	0	0
RFX7	64864	broad.mit.edu	37	15	56385698	56385698	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:56385698G>A	uc010bfn.2	-	9	4228	c.4228C>T	c.(4228-4230)CGT>TGT	p.R1410C	RFX7_uc010ugk.1_Intron|RFX7_uc002adn.1_Intron	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	1313					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						CCCTGCTGACGACCTGGATCA	0.398													13	44					0	0	1	0	0
RFX7	64864	broad.mit.edu	37	15	56388240	56388240	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:56388240G>A	uc010bfn.2	-	9	1686	c.1686C>T	c.(1684-1686)CCC>CCT	p.P562P	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Silent_p.P376P	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	465					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						TAGGTGTCTGGGGAGCTTTAG	0.473													6	16					0	0	1	0	0
RFX7	64864	broad.mit.edu	37	15	56390337	56390337	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:56390337G>A	uc010bfn.2	-	8	1049	c.1049C>T	c.(1048-1050)TCA>TTA	p.S350L	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.S164L	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	253					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						AGAAAGGATTGAAGGATTTCC	0.423													21	46					0	0	1	0	0
MNS1	55329	broad.mit.edu	37	15	56726525	56726525	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:56726525C>T	uc002adr.2	-	8	1245	c.1080G>A	c.(1078-1080)TTG>TTA	p.L360L	MNS1_uc010bfo.2_Silent_p.L228L|TEX9_uc002adp.2_Intron|TEX9_uc010ugl.1_Intron	NM_018365	NP_060835	Q8NEH6	MNS1_HUMAN	meiosis-specific nuclear structural 1	360	Potential.|Glu-rich.				meiosis					ovary(1)	1				all cancers(107;0.0196)|GBM - Glioblastoma multiforme(80;0.101)		CTAATTCCTTCAAGGCCATTT	0.338													24	83					0	0	1	0	0
ZNF280D	54816	broad.mit.edu	37	15	56961140	56961140	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:56961140G>A	uc002adu.2	-	14	1643	c.1426C>T	c.(1426-1428)CGT>TGT	p.R476C	ZNF280D_uc002adv.2_Missense_Mutation_p.R463C|ZNF280D_uc010bfq.2_Missense_Mutation_p.R476C|ZNF280D_uc002adw.1_Missense_Mutation_p.R504C|ZNF280D_uc010bfr.1_RNA|ZNF280D_uc010bfp.2_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	476					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		TTTGTACAACGATGTATTCCT	0.328													17	66					0	0	1	0	0
TCF12	6938	broad.mit.edu	37	15	57523364	57523364	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57523364C>T	uc002aec.2	+	9	878	c.594C>T	c.(592-594)TCC>TCT	p.S198S	TCF12_uc010ugm.1_Silent_p.S250S|TCF12_uc010ugn.1_Silent_p.S194S|TCF12_uc002aea.2_Silent_p.S198S|TCF12_uc010bfs.2_Intron|TCF12_uc002aeb.2_Silent_p.S198S|TCF12_uc002aed.2_Silent_p.S198S|TCF12_uc002aee.2_Silent_p.S28S|TCF12_uc010bft.2_Silent_p.S28S|TCF12_uc010ugo.1_Missense_Mutation_p.P9L	NM_207038	NP_996921	Q99081	HTF4_HUMAN	transcription factor 12 isoform b	198					immune response|muscle organ development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(2)|lung(1)	8		Colorectal(260;0.0907)		all cancers(107;0.000313)|GBM - Glioblastoma multiforme(80;0.00878)|STAD - Stomach adenocarcinoma(283;0.239)		ATGCACCATCCCCAAATTCAG	0.343			T	TEC	extraskeletal myxoid chondrosarcoma								46	125					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57730213	57730213	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57730213G>A	uc002aeg.2	+	2	92	c.16G>A	c.(16-18)GGT>AGT	p.G6S	CGNL1_uc010bfw.2_Missense_Mutation_p.G6S	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	6	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GCTGTATTTCGGTGAATATCA	0.443													141	278					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57730674	57730674	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57730674G>A	uc002aeg.2	+	2	553	c.477G>A	c.(475-477)AAG>AAA	p.K159K	CGNL1_uc010bfw.2_Silent_p.K159K	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	159	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		ACCCTGAAAAGAATGAGTTGA	0.433													16	87					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57731603	57731603	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57731603A>T	uc002aeg.2	+	2	1482	c.1406A>T	c.(1405-1407)AAA>ATA	p.K469I	CGNL1_uc010bfw.2_Missense_Mutation_p.K469I	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	469	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		ATAGATGGGAAAGTTCTGGAA	0.582													22	66					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57745893	57745893	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57745893G>A	uc002aeg.2	+	7	2143	c.2067G>A	c.(2065-2067)GTG>GTA	p.V689V	CGNL1_uc010bfw.2_Silent_p.V689V	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	689	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TATTCCAGGTGAAGATGGAAC	0.517													10	15					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57745930	57745930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57745930G>A	uc002aeg.2	+	7	2180	c.2104G>A	c.(2104-2106)GAT>AAT	p.D702N	CGNL1_uc010bfw.2_Missense_Mutation_p.D702N	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	702	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TGAGATCAGGGATCTCCAGGA	0.537													5	27					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57745960	57745960	+	Missense_Mutation	SNP	G	A	A	rs149480547		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57745960G>A	uc002aeg.2	+	7	2210	c.2134G>A	c.(2134-2136)GAT>AAT	p.D712N	CGNL1_uc010bfw.2_Missense_Mutation_p.D712N	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	712	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGAAATGCACGATGAACTGGA	0.562													10	34					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57754021	57754021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57754021G>A	uc002aeg.2	+	8	2410	c.2334G>A	c.(2332-2334)ATG>ATA	p.M778I	CGNL1_uc010bfw.2_Missense_Mutation_p.M778I	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	778	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		ATCAGGAGATGGACAAGCTGA	0.537													26	69					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57809130	57809130	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57809130C>T	uc002aeg.2	+	9	2632	c.2556C>T	c.(2554-2556)ATC>ATT	p.I852I	CGNL1_uc010bfw.2_Silent_p.I852I	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	852	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AAAGGCAGATCGAGGACCTGA	0.577													8	32					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57815731	57815731	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57815731G>A	uc002aeg.2	+	11	2836	c.2760G>A	c.(2758-2760)GAG>GAA	p.E920E	CGNL1_uc010bfw.2_Silent_p.E920E	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	920	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGTTGTCTGAGAAGCTCAAAG	0.512													15	29					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57910260	57910260	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57910260C>T	uc002aei.2	+	3	311	c.192C>T	c.(190-192)ACC>ACT	p.T64T	GCOM1_uc002aej.2_Silent_p.T64T|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Silent_p.T64T|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Silent_p.T64T|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	64					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GAGAACCTACCAGGAAACTTC	0.408													20	83					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57918040	57918040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57918040C>T	uc002aei.2	+	5	594	c.475C>T	c.(475-477)CGT>TGT	p.R159C	GCOM1_uc002aej.2_Missense_Mutation_p.R159C|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_Intron|GCOM1_uc002aem.2_Missense_Mutation_p.R159C|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.R159C|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	159					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						TGCCCTGGATCGTTTTAATGC	0.483													23	43					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57924639	57924639	+	Missense_Mutation	SNP	C	T	T	rs138018355	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57924639C>T	uc002aei.2	+	7	805	c.686C>T	c.(685-687)TCG>TTG	p.S229L	GCOM1_uc002aej.2_Missense_Mutation_p.S229L|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.S229L|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.S229L|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	229	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						TAGGTGGAATCGTCCCAAGAA	0.517													43	113					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57929968	57929968	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57929968G>A	uc002aei.2	+	9	1128	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	GCOM1_uc002aej.2_Missense_Mutation_p.E337K|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.E337K|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.E337K|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	337	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						TTCTGACAAGGAAAGGTAAGA	0.383													8	21					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57931689	57931689	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57931689C>T	uc002aei.2	+	10	1184	c.1065C>T	c.(1063-1065)CAC>CAT	p.H355H	GCOM1_uc002aej.2_Silent_p.H355H|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Silent_p.H355H|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Silent_p.H355H|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	355	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GGATCAGACACCTAGATGACA	0.498													8	47					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57931719	57931719	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:57931719G>A	uc002aei.2	+	10	1214	c.1095G>A	c.(1093-1095)AAG>AAA	p.K365K	GCOM1_uc002aej.2_Silent_p.K365K|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Silent_p.K365K|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Silent_p.K365K|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	365	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GCCAGCAGAAGAAAGTCAAGC	0.522													10	34					0	0	1	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58285269	58285269	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:58285269C>T	uc002aex.2	-	6	616	c.558G>A	c.(556-558)TGG>TGA	p.W186*	ALDH1A2_uc002aey.2_Nonsense_Mutation_p.W186*|ALDH1A2_uc010ugv.1_Nonsense_Mutation_p.W165*|ALDH1A2_uc010ugw.1_Nonsense_Mutation_p.W157*|ALDH1A2_uc002aew.2_Nonsense_Mutation_p.W90*	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	186					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	GGGGGAAGTTCCACTGAAAGG	0.418													15	56					0	0	1	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58302915	58302916	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:58302915_58302916CC>TT	uc002aex.2	-	4	482_483	c.424_425GG>AA	c.(424-426)GGC>AAC	p.G142N	ALDH1A2_uc002aey.2_Missense_Mutation_p.G142N|ALDH1A2_uc010ugv.1_Missense_Mutation_p.G121N|ALDH1A2_uc010ugw.1_Missense_Mutation_p.G113N|ALDH1A2_uc002aew.2_Missense_Mutation_p.G46N	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	142					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	TTTGATGACGCCCTGCAAATCC	0.431													22	51					0	0	1	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58306080	58306080	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:58306080C>T	uc002aex.2	-	3	397	c.339G>A	c.(337-339)GTG>GTA	p.V113V	ALDH1A2_uc002aey.2_Silent_p.V113V|ALDH1A2_uc010ugv.1_Silent_p.V92V|ALDH1A2_uc010ugw.1_Silent_p.V84V|ALDH1A2_uc002aew.2_Silent_p.V17V	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	113					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	TGTCCCGTTCCACCAAGTCTG	0.473													128	343					0	0	1	0	0
AQP9	366	broad.mit.edu	37	15	58430866	58430866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:58430866C>T	uc002aez.2	+	1	459	c.102C>T	c.(100-102)TTC>TTT	p.F34F	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Intron	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	34	Helical; (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		TGGGCACGTTCATCTTGATTG	0.453													11	80					0	0	1	0	0
SLTM	79811	broad.mit.edu	37	15	59182605	59182605	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:59182605G>A	uc002afp.2	-	15	2042	c.1954C>T	c.(1954-1956)CGT>TGT	p.R652C	SLTM_uc002afn.2_Missense_Mutation_p.R194C|SLTM_uc002afo.2_Missense_Mutation_p.R634C|SLTM_uc002afq.2_Missense_Mutation_p.R221C|SLTM_uc010bgd.2_Missense_Mutation_p.R221C	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	652	Arg/Glu-rich.|Potential.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						TCCCGTTCACGAATTATTCTA	0.433													52	105					0	0	1	0	0
RNF111	54778	broad.mit.edu	37	15	59323895	59323895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:59323895C>T	uc002afv.2	+	2	1153	c.874C>T	c.(874-876)CCC>TCC	p.P292S	RNF111_uc002afs.2_Missense_Mutation_p.P292S|RNF111_uc002aft.2_Missense_Mutation_p.P292S|RNF111_uc002afu.2_Missense_Mutation_p.P292S|RNF111_uc002afw.2_Missense_Mutation_p.P292S	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	292	Ser-rich.|Interaction with AXIN1.				multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		TCCAGCTGTTCCCTCAGGTAA	0.368													37	92					0	0	1	0	0
RNF111	54778	broad.mit.edu	37	15	59373179	59373179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:59373179C>T	uc002afv.2	+	8	2272	c.1993C>T	c.(1993-1995)CCG>TCG	p.P665S	RNF111_uc002afs.2_Missense_Mutation_p.P665S|RNF111_uc002aft.2_Missense_Mutation_p.P665S|RNF111_uc002afu.2_Missense_Mutation_p.P664S|RNF111_uc002afw.2_Missense_Mutation_p.P665S|RNF111_uc002afx.2_Missense_Mutation_p.P191S	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	665	Pro-rich.				multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		TTCTGCCTGCCCGCATTCTCA	0.438													25	161					0	0	1	0	0
RNF111	54778	broad.mit.edu	37	15	59373296	59373296	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:59373296C>T	uc002afv.2	+	8	2389	c.2110C>T	c.(2110-2112)CCT>TCT	p.P704S	RNF111_uc002afs.2_Missense_Mutation_p.P704S|RNF111_uc002aft.2_Missense_Mutation_p.P704S|RNF111_uc002afu.2_Missense_Mutation_p.P703S|RNF111_uc002afw.2_Missense_Mutation_p.P704S|RNF111_uc002afx.2_Missense_Mutation_p.P230S	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	704	Pro-rich.				multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		AACATCTCATCCTGTGGCACC	0.507													22	165					0	0	1	0	0
FAM81A	145773	broad.mit.edu	37	15	59799517	59799517	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:59799517G>A	uc002agc.2	+	5	706	c.519G>A	c.(517-519)ACG>ACA	p.T173T		NM_152450	NP_689663	Q8TBF8	FA81A_HUMAN	hypothetical protein LOC145773	173	Potential.									ovary(1)	1						TCTTGGAAACGAAAATCAAAG	0.433													4	23					0	0	1	0	0
GCNT3	9245	broad.mit.edu	37	15	59910953	59910953	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:59910953C>T	uc002age.2	+	3	965	c.516C>T	c.(514-516)TTC>TTT	p.F172F	GCNT3_uc002agd.2_Silent_p.F172F	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	172	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						CAGAAACTTTCAAAGAGGCGG	0.463													27	121					0	0	1	0	0
GCNT3	9245	broad.mit.edu	37	15	59911343	59911343	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:59911343C>T	uc002age.2	+	3	1355	c.906C>T	c.(904-906)TCC>TCT	p.S302S	GCNT3_uc002agd.2_Silent_p.S302S	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	302	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						TTGTGGCTTCCCGAGATTTCG	0.433													70	167					0	0	1	0	0
RORA	6095	broad.mit.edu	37	15	60919446	60919446	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:60919446C>T	uc002agv.2	-	1	284	c.128G>A	c.(127-129)GGA>GAA	p.G43E	RORA_uc002agw.2_Missense_Mutation_p.G43E|RORA_uc002agx.2_Intron	NM_134260	NP_599022	P35398	RORA_HUMAN	RAR-related orphan receptor A isoform b	43	Modulating.				positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						ccttctggCTCCTTCACCTGC	0.279													6	70					0	0	1	0	0
VPS13C	54832	broad.mit.edu	37	15	62239438	62239438	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:62239438G>A	uc002agz.2	-	43	4904	c.4830C>T	c.(4828-4830)GTC>GTT	p.V1610V	VPS13C_uc002aha.2_Silent_p.V1567V|VPS13C_uc002ahb.1_Silent_p.V1610V|VPS13C_uc002ahc.1_Silent_p.V1567V	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1610					protein localization					ovary(2)	2						CACAGACAAAGACATTAAATG	0.308													51	151					0	0	1	0	0
C2CD4A	145741	broad.mit.edu	37	15	62359880	62359880	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:62359880C>T	uc002ahf.3	+	2	209	c.68C>T	c.(67-69)CCG>CTG	p.P23L		NM_207322	NP_997205	Q8NCU7	C2C4A_HUMAN	nuclear localized factor 1	23						nucleus					0						TGGCTTCTCCCGGGTCGGGCC	0.667													22	25					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	62539564	62539564	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:62539564C>T	uc002ain.1	-	3		c.219G>A			uc002ajj.1_Missense_Mutation_p.E101K|uc002ajw.2_5'Flank|uc010uhq.1_5'Flank|uc002ajx.2_5'Flank|uc002ajy.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		TGCAGATACTCGGCATACTGC	0.542													13	28					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	62539576	62539576	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:62539576C>T	uc002ain.1	-	3		c.207G>A			uc002ajj.1_Missense_Mutation_p.E97K|uc002ajw.2_5'Flank|uc010uhq.1_5'Flank|uc002ajx.2_5'Flank|uc002ajy.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		GCATACTGCTCTCTCTCCATT	0.567													14	19					0	0	1	0	0
TLN2	83660	broad.mit.edu	37	15	63011984	63011984	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:63011984C>T	uc002alb.3	+	22	2896	c.2896C>T	c.(2896-2898)CCT>TCT	p.P966S		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	966	Ala-rich.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TGATCACATCCCTCAGCTGGT	0.547													23	15					0	0	1	0	0
TLN2	83660	broad.mit.edu	37	15	63019376	63019376	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:63019376G>A	uc002alb.3	+	25	3346	c.3346G>A	c.(3346-3348)GAA>AAA	p.E1116K		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1116	Ala-rich.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TCAAGGCAACGAACACTACAC	0.562													7	49					0	0	1	0	0
TLN2	83660	broad.mit.edu	37	15	63047835	63047835	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:63047835C>T	uc002alb.3	+	34	4581	c.4581C>T	c.(4579-4581)TTC>TTT	p.F1527F	TLN2_uc002alc.3_5'UTR|TLN2_uc002ald.2_5'Flank	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1527					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						AGAGGCACTTCGTCCAGTCAG	0.562													14	68					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	63955210	63955210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:63955210G>A	uc002amp.2	-	44	9022	c.8874C>T	c.(8872-8874)ATC>ATT	p.I2958I		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2958					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GTACCTCTGGGATCCACATTC	0.468													8	63					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	63966615	63966615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:63966615C>T	uc002amp.2	-	38	7920	c.7772G>A	c.(7771-7773)CGA>CAA	p.R2591Q		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2591					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GGCTTGCGCTCGTTCCAGATC	0.448													11	67					0	0	1	0	0
MIR422A	494334	broad.mit.edu	37	15	64163163	64163163	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:64163163G>A	hsa-mir-422a|MI0001444	-			c.56G>A																				0						gggacagagagcccatctgca	0.204													8	143					0	0	1	0	0
DAPK2	23604	broad.mit.edu	37	15	64263654	64263654	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:64263654G>A	uc002amr.2	-	4	452	c.421C>T	c.(421-423)CAC>TAC	p.H141Y	DAPK2_uc010uim.1_RNA|DAPK2_uc010bgu.1_Missense_Mutation_p.H131Y	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	141	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		TTCTTTGTGTGAAGGTAGTTC	0.483													24	338					0	0	1	0	0
DAPK2	23604	broad.mit.edu	37	15	64275848	64275848	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:64275848C>T	uc002amr.2	-	3	229	c.198G>A	c.(196-198)GTG>GTA	p.V66V	DAPK2_uc010uim.1_RNA|DAPK2_uc010bgu.1_Silent_p.V56V	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	66	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		CCTCCCGGCTCACACCGCGCC	0.622													14	77					0	0	1	0	0
DAPK2	23604	broad.mit.edu	37	15	64275924	64275924	+	Missense_Mutation	SNP	C	T	T	rs145891572	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:64275924C>T	uc002amr.2	-	3	153	c.122G>A	c.(121-123)CGG>CAG	p.R41Q	DAPK2_uc010uim.1_RNA|DAPK2_uc010bgu.1_Missense_Mutation_p.R31Q	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	41	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		GCTCTTCTCCCGGCACTTCTT	0.597													8	59					0	0	1	0	0
SNX1	6642	broad.mit.edu	37	15	64404804	64404804	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:64404804C>T	uc002amv.2	+	2	228	c.192C>T	c.(190-192)TCC>TCT	p.S64S	SNX1_uc010bgv.2_5'UTR|SNX1_uc010uio.1_Silent_p.S64S|SNX1_uc002amw.2_Silent_p.S64S|SNX1_uc002amx.2_Silent_p.S64S|SNX1_uc002amy.2_5'UTR|SNX1_uc010bgw.2_5'UTR	NM_003099	NP_003090	Q13596	SNX1_HUMAN	sorting nexin 1 isoform a	64					cell communication|early endosome to Golgi transport|endocytosis|intracellular protein transport	early endosome membrane|Golgi apparatus	phosphatidylinositol binding|protein binding|protein transporter activity				0						TAACTACATCCCTTCTTCCCA	0.393													8	124					0	0	1	0	0
ZNF609	23060	broad.mit.edu	37	15	64967823	64967823	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:64967823C>G	uc002ann.2	+	4	2770	c.2770C>G	c.(2770-2772)CTG>GTG	p.L924V		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	924						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GAGCCAGGCCCTGAAGACAAA	0.507													16	193					0	0	1	0	0
RBPMS2	348093	broad.mit.edu	37	15	65042566	65042566	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65042566G>A	uc002anq.2	-	3	432	c.180C>T	c.(178-180)TCC>TCT	p.S60S		NM_194272	NP_919248	Q6ZRY4	RBPS2_HUMAN	RNA binding protein with multiple splicing 2	60	RRM.						nucleic acid binding|nucleotide binding				0						GCTTGATCAGGGACCCTTCAT	0.572													84	241					0	0	1	0	0
PIF1	80119	broad.mit.edu	37	15	65108826	65108826	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65108826G>A	uc002ant.2	-	12	1879	c.1813C>T	c.(1813-1815)CCC>TCC	p.P605S	PIF1_uc002anr.2_Missense_Mutation_p.P153S|PIF1_uc002ans.2_Missense_Mutation_p.P296S|PIF1_uc010uiq.1_Missense_Mutation_p.P605S	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	605	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						AGCACACGGGGGTCACAGCGA	0.657													45	160					0	0	1	0	0
PIF1	80119	broad.mit.edu	37	15	65108835	65108835	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65108835G>A	uc002ant.2	-	12	1870	c.1804C>T	c.(1804-1806)CGC>TGC	p.R602C	PIF1_uc002anr.2_Missense_Mutation_p.R150C|PIF1_uc002ans.2_Missense_Mutation_p.R293C|PIF1_uc010uiq.1_Missense_Mutation_p.R602C	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	602	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						GGGTCACAGCGAACCGCCATG	0.657													36	174					0	0	1	0	0
PLEKHO2	80301	broad.mit.edu	37	15	65157266	65157267	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65157266_65157267CC>TT	uc002anv.2	+	6	786_787	c.652_653CC>TT	c.(652-654)CCT>TTT	p.P218F	PLEKHO2_uc010bgz.2_Intron|PLEKHO2_uc002anw.2_Missense_Mutation_p.P168F	NM_025201	NP_079477	Q8TD55	PKHO2_HUMAN	pleckstrin homology domain containing, family O	218	Pro-rich.									ovary(1)|lung(1)	2						GACCACCAGCCCTGGTGACAGG	0.624													21	176					0	0	1	0	0
ANKDD1A	348094	broad.mit.edu	37	15	65209693	65209693	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65209693C>T	uc002aoa.2	+	3	276	c.247C>T	c.(247-249)CTC>TTC	p.L83F	ANKDD1A_uc002anx.1_Missense_Mutation_p.L83F|ANKDD1A_uc002any.2_5'UTR|ANKDD1A_uc002anz.2_Intron|ANKDD1A_uc002aob.2_Missense_Mutation_p.L53F	NM_182703	NP_874362	Q495B1	AKD1A_HUMAN	ankyrin repeat and death domain containing 1A	83					signal transduction					ovary(1)	1						GGTAGGGGCCCTCACAGAGGC	0.587													4	10					0	0	1	0	0
RASL12	51285	broad.mit.edu	37	15	65347440	65347440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65347440C>T	uc002aoi.1	-	5	813	c.598G>A	c.(598-600)GAG>AAG	p.E200K	RASL12_uc002aoj.1_Missense_Mutation_p.E181K|RASL12_uc010uir.1_Missense_Mutation_p.E189K	NM_016563	NP_057647	Q9NYN1	RASLC_HUMAN	RAS-like, family 12 protein	200					small GTPase mediated signal transduction	membrane	GTP binding|GTPase activity			skin(1)	1						GCCCTCTCCTCGGAGATGAAG	0.662													12	21					0	0	1	0	0
KBTBD13	390594	broad.mit.edu	37	15	65370117	65370117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65370117G>A	uc010uis.1	+	1	964	c.964G>A	c.(964-966)GAG>AAG	p.E322K	RASL12_uc010uir.1_5'Flank	NM_001101362	NP_001094832	C9JR72	KBTBD_HUMAN	hypothetical protein LOC390594	322	Kelch 4.					cytoplasm					0						CGCCGTGGTGGAGTACGCAGT	0.731													8	10					0	0	1	0	0
KBTBD13	390594	broad.mit.edu	37	15	65370431	65370431	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65370431G>A	uc010uis.1	+	1	1278	c.1278G>A	c.(1276-1278)GAG>GAA	p.E426E	RASL12_uc010uir.1_5'Flank	NM_001101362	NP_001094832	C9JR72	KBTBD_HUMAN	hypothetical protein LOC390594	426						cytoplasm					0						TGCTCAGGGAGAAAGCCGGCT	0.647													5	16					0	0	1	0	0
PDCD7	10081	broad.mit.edu	37	15	65411101	65411101	+	Missense_Mutation	SNP	G	A	A	rs61756022	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65411101G>A	uc002aol.2	-	5	1467	c.1412C>T	c.(1411-1413)CCG>CTG	p.P471L		NM_005707	NP_005698	Q8N8D1	PDCD7_HUMAN	programmed cell death 7	471					apoptosis|induction of apoptosis|response to glucocorticoid stimulus	U12-type spliceosomal complex					0						GCTGGGGAGCGGGGGAAGGAC	0.498													23	81					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65489537	65489537	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65489537G>A	uc002aon.2	-	9	3268	c.3087C>T	c.(3085-3087)CCC>CCT	p.P1029P		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	1029					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						AGCTGCCCTGGGGGATGACCT	0.582													18	88					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65489842	65489842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65489842G>A	uc002aon.2	-	9	2963	c.2782C>T	c.(2782-2784)CCC>TCC	p.P928S		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	928					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						TCGTTGAAGGGGACTGTGTTG	0.522													25	154					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65490231	65490231	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65490231C>T	uc002aon.2	-	9	2574	c.2393G>A	c.(2392-2394)AGT>AAT	p.S798N		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	798					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						TGTGATGACACTGTCAAAGCG	0.587													16	135					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65499330	65499330	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65499330C>T	uc002aon.2	-	4	395	c.214G>A	c.(214-216)GAG>AAG	p.E72K		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	72					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						TCCAGCCGCTCATAGTCGCCC	0.612													21	21					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65500011	65500011	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65500011C>T	uc002aon.2	-	3	334	c.153G>A	c.(151-153)GAG>GAA	p.E51E		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	51					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						ACAACTCACTCTCCAGGGTGT	0.592													27	25					0	0	1	0	0
PARP16	54956	broad.mit.edu	37	15	65559098	65559098	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65559098C>T	uc002aoo.2	-	3	575	c.321G>A	c.(319-321)AAG>AAA	p.K107K	PARP16_uc002aop.2_Intron|PARP16_uc002aoq.2_Silent_p.K107K	NM_017851	NP_060321	Q8N5Y8	PAR16_HUMAN	poly (ADP-ribose) polymerase family, member 16	107	PARP catalytic.					integral to membrane	NAD+ ADP-ribosyltransferase activity			lung(2)	2						GCTTTTGGATCTTTTCAAACT	0.438													6	34					0	0	1	0	0
IGDCC3	9543	broad.mit.edu	37	15	65621371	65621371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65621371G>A	uc002aos.2	-	14	2573	c.2321C>T	c.(2320-2322)GCT>GTT	p.A774V	IGDCC3_uc002aor.1_Missense_Mutation_p.A60V	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	774	Cytoplasmic (Potential).									ovary(3)	3						GGCGCAGGGAGCCGTGGCCTC	0.711													17	13					0	0	1	0	0
IGDCC3	9543	broad.mit.edu	37	15	65621418	65621418	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65621418G>A	uc002aos.2	-	14	2526	c.2274C>T	c.(2272-2274)GGC>GGT	p.G758G	IGDCC3_uc002aor.1_Silent_p.G44G	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	758	Cytoplasmic (Potential).									ovary(3)	3						CCTCCATCAGGCCGCACCCCT	0.706													11	3					0	0	1	0	0
IGDCC3	9543	broad.mit.edu	37	15	65621788	65621788	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65621788C>T	uc002aos.2	-	13	2397	c.2145G>A	c.(2143-2145)AAG>AAA	p.K715K	IGDCC3_uc002aor.1_Silent_p.K2K	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	715	Cytoplasmic (Potential).									ovary(3)	3						GCTCCAGCTCCTTCATATCCA	0.657													88	130					0	0	1	0	0
IGDCC3	9543	broad.mit.edu	37	15	65623883	65623883	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65623883C>T	uc002aos.2	-	8	1515	c.1263G>A	c.(1261-1263)GAG>GAA	p.E421E	IGDCC3_uc002aor.1_5'Flank	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	421	Extracellular (Potential).									ovary(3)	3						CGGGGAGCCCCTCAGCCCACA	0.617													9	29					0	0	1	0	0
IGDCC3	9543	broad.mit.edu	37	15	65623988	65623988	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65623988G>A	uc002aos.2	-	8	1410	c.1158C>T	c.(1156-1158)ACC>ACT	p.T386T	IGDCC3_uc002aor.1_5'Flank	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	386	Extracellular (Potential).|Ig-like C2-type 4.									ovary(3)	3						TTCCAGAAATGGTCAGTGTGC	0.468													11	20					0	0	1	0	0
IGDCC3	9543	broad.mit.edu	37	15	65627693	65627693	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65627693G>A	uc002aos.2	-	4	873	c.621C>T	c.(619-621)TTC>TTT	p.F207F		NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	207	Extracellular (Potential).|Ig-like C2-type 2.									ovary(3)	3						CCACACAGTGGAAGATGCCAC	0.597													64	67					0	0	1	0	0
IGDCC4	57722	broad.mit.edu	37	15	65676400	65676400	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65676400G>A	uc002aou.1	-	20	3910	c.3700C>T	c.(3700-3702)CCT>TCT	p.P1234S	IGDCC4_uc002aot.1_Missense_Mutation_p.P822S	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1234	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						GCTCCTAGAGGGCAGGGGGAT	0.632													7	24					0	0	1	0	0
IGDCC4	57722	broad.mit.edu	37	15	65678963	65678963	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65678963G>A	uc002aou.1	-	17	3087	c.2877C>T	c.(2875-2877)ATC>ATT	p.I959I	IGDCC4_uc002aot.1_Silent_p.I547I	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	959	Helical; (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						CACCCACGATGATGCCCGTGA	0.637											OREG0023195	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	18					0	0	1	0	0
IGDCC4	57722	broad.mit.edu	37	15	65684548	65684548	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65684548G>A	uc002aou.1	-	11	2256	c.2046C>T	c.(2044-2046)GGC>GGT	p.G682G	IGDCC4_uc002aot.1_Silent_p.G270G	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	682	Extracellular (Potential).|Fibronectin type-III 3.					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						GGTCTCCACGGCCCCCTGGCA	0.647													23	77					0	0	1	0	0
DENND4A	10260	broad.mit.edu	37	15	65968957	65968957	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:65968957G>A	uc002aph.2	-	23	4441	c.4063C>T	c.(4063-4065)CGT>TGT	p.R1355C	DENND4A_uc002api.2_Missense_Mutation_p.R1398C	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1355					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						AGACTGGTACGATCAGAACTT	0.363													8	29					0	0	1	0	0
DENND4A	10260	broad.mit.edu	37	15	66048628	66048628	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:66048628G>A	uc002aph.2	-	3	539	c.161C>T	c.(160-162)TCT>TTT	p.S54F	DENND4A_uc002api.2_Missense_Mutation_p.S54F|DENND4A_uc002apj.3_Missense_Mutation_p.S54F|DENND4A_uc010ujj.1_Missense_Mutation_p.S54F	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	54	MABP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						CTCCCCAAGAGATTTGATAAT	0.378													7	35					0	0	1	0	0
MEGF11	84465	broad.mit.edu	37	15	66223165	66223165	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:66223165C>T	uc002apm.2	-	11	1545	c.1404G>A	c.(1402-1404)AAG>AAA	p.K468K	MEGF11_uc002apl.2_Silent_p.K393K|MEGF11_uc002apn.1_Silent_p.K468K	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	468	EGF-like 8.					basolateral plasma membrane|integral to membrane				pancreas(1)	1						CATTACCTTCCTTGCAGGTAC	0.587													54	78					0	0	1	0	0
MEGF11	84465	broad.mit.edu	37	15	66416266	66416266	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:66416266G>A	uc002apm.2	-	3	312	c.171C>T	c.(169-171)ATC>ATT	p.I57I	MEGF11_uc002apl.2_Missense_Mutation_p.S16F|MEGF11_uc002apn.1_Silent_p.I57I	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	57	EMI.					basolateral plasma membrane|integral to membrane				pancreas(1)	1						ACCAGTTGAGGATGTCTGTGC	0.532													17	92					0	0	1	0	0
RPL4	6124	broad.mit.edu	37	15	66795835	66795836	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:66795835_66795836GG>AA	uc002apv.2	-	2	91_92	c.35_36CC>TT	c.(34-36)TCC>TTT	p.S12F	RPL4_uc010bhr.2_5'UTR|RPL4_uc002apw.2_5'UTR|RPL4_uc002apx.2_5'UTR|RPL4_uc010ujq.1_Missense_Mutation_p.S12F|SNORD18C_uc010bhs.1_5'Flank|SNORD18B_uc002apy.1_5'Flank|SNORD16_uc010bht.2_5'Flank|SNORD18A_uc002apz.1_5'Flank|ZWILCH_uc010bhu.1_5'Flank|ZWILCH_uc002aqb.2_5'Flank|ZWILCH_uc002aqa.2_5'Flank|ZWILCH_uc010bhv.2_5'Flank	NM_000968	NP_000959	P36578	RL4_HUMAN	ribosomal protein L4	12					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						CCCCCTTTTCGGAGTACACCGA	0.426													14	57					0	0	1	0	0
SMAD6	4091	broad.mit.edu	37	15	67073660	67073660	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:67073660C>T	uc002aqf.2	+	4	2201	c.1278C>T	c.(1276-1278)GTC>GTT	p.V426V	SMAD6_uc010bhx.2_RNA|SMAD6_uc002aqg.2_Silent_p.V165V	NM_005585	NP_005576	O43541	SMAD6_HUMAN	SMAD family member 6 isoform 1	426	MH2.				BMP signaling pathway|immune response|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of caspase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of SMAD protein complex assembly|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of S phase of mitotic cell cycle|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	cytosol|transcription factor complex	co-SMAD binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I activin receptor binding|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			skin(1)	1						GCGCCCTGGTCGTGCGCAAGG	0.731													10	37					0	0	1	0	0
SMAD6	4091	broad.mit.edu	37	15	67073803	67073803	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:67073803C>T	uc002aqf.2	+	4	2344	c.1421C>T	c.(1420-1422)CCC>CTC	p.P474L	SMAD6_uc010bhx.2_RNA|SMAD6_uc002aqg.2_Missense_Mutation_p.P213L	NM_005585	NP_005576	O43541	SMAD6_HUMAN	SMAD family member 6 isoform 1	474	MH2.				BMP signaling pathway|immune response|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of caspase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of SMAD protein complex assembly|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of S phase of mitotic cell cycle|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	cytosol|transcription factor complex	co-SMAD binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I activin receptor binding|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			skin(1)	1						GGCTGGGGGCCCTGCTACTCC	0.716													7	32					0	0	1	0	0
IQCH	64799	broad.mit.edu	37	15	67555523	67555523	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:67555523G>A	uc002aqo.1	+	3	285	c.238G>A	c.(238-240)GAG>AAG	p.E80K	IQCH_uc010ujv.1_5'UTR|IQCH_uc002aqn.1_Intron|IQCH_uc002aqq.1_Intron|IQCH_uc002aqp.1_Intron|IQCH_uc002aqm.2_Missense_Mutation_p.E80K	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	80										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		TGTTAATGATGAGAGCTTATA	0.323													19	77					0	0	1	0	0
IQCH	64799	broad.mit.edu	37	15	67629324	67629324	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:67629324G>A	uc002aqo.1	+	5	446	c.399G>A	c.(397-399)TCG>TCA	p.S133S	IQCH_uc010ujv.1_Intron|IQCH_uc002aqn.1_Intron|IQCH_uc002aqq.1_Intron|IQCH_uc002aqp.1_Intron	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	133										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		TAAAGGTTTCGAAGTTAATCA	0.343													45	74					0	0	1	0	0
IQCH	64799	broad.mit.edu	37	15	67664986	67664986	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:67664986C>T	uc002aqo.1	+	9	1338	c.1291C>T	c.(1291-1293)CGC>TGC	p.R431C	IQCH_uc010ujv.1_Missense_Mutation_p.R250C|IQCH_uc002aqn.1_Missense_Mutation_p.R258C|IQCH_uc002aqq.1_Missense_Mutation_p.R179C|IQCH_uc002aqp.1_Missense_Mutation_p.R183C	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	431										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		GGAGAATTTTCGCATTCGAGC	0.443													52	174					0	0	1	0	0
IQCH	64799	broad.mit.edu	37	15	67713779	67713779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:67713779C>T	uc002aqo.1	+	16	2416	c.2369C>T	c.(2368-2370)CCT>CTT	p.P790L	IQCH_uc002aqq.1_Missense_Mutation_p.P447L|IQCH_uc002aqp.1_Missense_Mutation_p.P451L|uc002aqr.1_RNA	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	790										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		ACCACCGTGCCTCAGACCTCA	0.507													18	92					0	0	1	0	0
MAP2K5	5607	broad.mit.edu	37	15	67995676	67995676	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:67995676C>T	uc002aqu.2	+	16	1627	c.974C>T	c.(973-975)CCT>CTT	p.P325L	MAP2K5_uc002aqv.2_Missense_Mutation_p.P325L|MAP2K5_uc002aqw.2_Missense_Mutation_p.P165L|MAP2K5_uc002aqx.2_Missense_Mutation_p.P135L	NM_145160	NP_660143	Q13163	MP2K5_HUMAN	mitogen-activated protein kinase kinase 5	325	Protein kinase.				nerve growth factor receptor signaling pathway		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)	2						TTCTTGCAGCCTGAAAGGATT	0.453													35	85					0	0	1	0	0
PIAS1	8554	broad.mit.edu	37	15	68445979	68445979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:68445979C>T	uc002aqz.2	+	7	976	c.880C>T	c.(880-882)CTT>TTT	p.L294F	PIAS1_uc010ujx.1_Missense_Mutation_p.L294F	NM_016166	NP_057250	O75925	PIAS1_HUMAN	protein inhibitor of activated STAT, 1	294					androgen receptor signaling pathway|interferon-gamma-mediated signaling pathway|JAK-STAT cascade|positive regulation of protein sumoylation|positive regulation of transcription, DNA-dependent|regulation of interferon-gamma-mediated signaling pathway|transcription, DNA-dependent	nuclear speck	androgen receptor binding|DNA binding|enzyme binding|SUMO ligase activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)	2						AACAGTTCTTCTTCAGAGGTT	0.323													29	41					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68606139	68606139	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:68606139C>T	uc002ari.2	-	23	2947	c.2860G>A	c.(2860-2862)GAG>AAG	p.E954K	ITGA11_uc010bib.2_Missense_Mutation_p.E954K	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	954	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	ACGTCAGCCTCGTATTTGAGG	0.637													7	32					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68617472	68617472	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:68617472G>A	uc002ari.2	-	18	2406	c.2319C>T	c.(2317-2319)GTC>GTT	p.V773V	ITGA11_uc010bib.2_Silent_p.V773V	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	773	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	GATGTACCGAGACTCTGAGAG	0.622													40	57					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68631940	68631940	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:68631940C>T	uc002ari.2	-	11	1261	c.1174G>A	c.(1174-1176)GGA>AGA	p.G392R	ITGA11_uc010bib.2_Missense_Mutation_p.G392R	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	392	FG-GAP 3.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	AGCACAGCTCCATTCCAGTCA	0.587													43	55					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68641181	68641181	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:68641181G>A	uc002ari.2	-	10	1205	c.1118C>T	c.(1117-1119)TCG>TTG	p.S373L	ITGA11_uc010bib.2_Missense_Mutation_p.S373L	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	373	FG-GAP 3.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	CACCACGTGCGAGGAAAAGCC	0.567													6	15					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68643118	68643118	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:68643118G>A	uc002ari.2	-	9	984	c.897C>T	c.(895-897)GTC>GTT	p.V299V	ITGA11_uc010bib.2_Silent_p.V299V	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	299	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	AGTAGCCCAGGACCTGCCAGG	0.527													49	71					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68649559	68649559	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:68649559C>T	uc002ari.2	-	7	766	c.679G>A	c.(679-681)GAA>AAA	p.E227K	ITGA11_uc010bib.2_Missense_Mutation_p.E227K	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	227	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	CTGGCAGCTTCCACCACATCT	0.468													39	46					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68650889	68650889	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:68650889C>T	uc002ari.2	-	6	594	c.507G>A	c.(505-507)CTG>CTA	p.L169L	ITGA11_uc010bib.2_Silent_p.L169L	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	169	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	TGGAGCCATCCAGGACAATGA	0.527													24	31					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68661616	68661616	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:68661616G>A	uc002ari.2	-	3	258	c.171C>T	c.(169-171)GTC>GTT	p.V57V	ITGA11_uc010bib.2_Silent_p.V57V	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	57	FG-GAP 1.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	GGGCGCCCACGACCAGCCTGG	0.567													21	86					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69320593	69320593	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:69320593C>T	uc002ars.1	+	3	233	c.213C>T	c.(211-213)TCC>TCT	p.S71S	NOX5_uc002arp.1_Silent_p.S53S|NOX5_uc002arq.1_Silent_p.S53S|NOX5_uc010bid.1_Silent_p.S64S|NOX5_uc002arr.1_Silent_p.S71S|NOX5_uc010bie.1_5'UTR	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	71	Cytoplasmic (Potential).|N-terminal regulatory region; interacts with the C-terminal catalytic region in a calcium-dependent manner.|EF-hand 2.|2 (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						TATTTGACTCCGATAGAAGTG	0.552													34	197					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69324005	69324005	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:69324005C>T	uc002ars.1	+	4	493	c.473C>T	c.(472-474)GCC>GTC	p.A158V	NOX5_uc002arp.1_Missense_Mutation_p.A140V|NOX5_uc002arq.1_Missense_Mutation_p.A112V|NOX5_uc010bid.1_Missense_Mutation_p.A123V|NOX5_uc002arr.1_Missense_Mutation_p.A130V|NOX5_uc010bie.1_5'UTR|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	158	Cytoplasmic (Potential).|N-terminal regulatory region; interacts with the C-terminal catalytic region in a calcium-dependent manner.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						CGCGAGAGCGCCATCTCGCTG	0.672													7	27					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69329379	69329379	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:69329379G>A	uc002ars.1	+	8	1220	c.1200G>A	c.(1198-1200)TGG>TGA	p.W400*	NOX5_uc002arp.1_Nonsense_Mutation_p.W382*|NOX5_uc002arq.1_Nonsense_Mutation_p.W354*|NOX5_uc010bid.1_Nonsense_Mutation_p.W365*|NOX5_uc002arr.1_Nonsense_Mutation_p.W372*|NOX5_uc010bie.1_Nonsense_Mutation_p.W200*|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	400	Helical; (Potential).|Ferric oxidoreductase.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						TGTTCTATTGGACTCACCTGT	0.557													112	151					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69329483	69329484	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:69329483_69329484CC>TT	uc002ars.1	+	8	1324_1325	c.1304_1305CC>TT	c.(1303-1305)GCC>GTT	p.A435V	NOX5_uc002arp.1_Missense_Mutation_p.A417V|NOX5_uc002arq.1_Missense_Mutation_p.A389V|NOX5_uc010bid.1_Missense_Mutation_p.A400V|NOX5_uc002arr.1_Missense_Mutation_p.A407V|NOX5_uc010bie.1_Missense_Mutation_p.A235V|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	435	Ferric oxidoreductase.|Helical; (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						CTGGAGAAGGCCATCGGACTGG	0.569													36	98					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69335027	69335027	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:69335027C>T	uc002ars.1	+	10	1549	c.1529C>T	c.(1528-1530)TCC>TTC	p.S510F	NOX5_uc002arp.1_Missense_Mutation_p.S492F|NOX5_uc002arq.1_Missense_Mutation_p.S464F|NOX5_uc010bid.1_Missense_Mutation_p.S475F|NOX5_uc002arr.1_Missense_Mutation_p.S482F|NOX5_uc010bie.1_Missense_Mutation_p.S310F|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	510	FAD-binding FR-type.|Cytoplasmic (Potential).|C-terminal catalytic region.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						CACATTCGGTCCCAAGGCCAG	0.557													13	73					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69348988	69348988	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:69348988G>A	uc002ars.1	+	16	2270	c.2250G>A	c.(2248-2250)AAG>AAA	p.K750K	NOX5_uc002arp.1_Silent_p.K732K|NOX5_uc002arq.1_Silent_p.K704K|NOX5_uc010bid.1_Silent_p.K715K|NOX5_uc002arr.1_Silent_p.K722K|NOX5_uc010bie.1_Silent_p.K550K|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	750	Extracellular (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						AGGTGCTGAAGGGCCATTGTG	0.537													58	66					0	0	1	0	0
PAQR5	54852	broad.mit.edu	37	15	69689814	69689814	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:69689814G>A	uc002arz.2	+	7	898	c.520G>A	c.(520-522)GAA>AAA	p.E174K	PAQR5_uc002asa.2_Missense_Mutation_p.E174K	NM_017705	NP_060175	Q9NXK6	MPRG_HUMAN	progestin and adipoQ receptor family member V	174	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane	receptor activity|steroid binding			ovary(2)	2						TAGGTTTCTTGAAATCCAGAA	0.502													65	88					0	0	1	0	0
LARP6	55323	broad.mit.edu	37	15	71125403	71125403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:71125403G>A	uc002ass.2	-	3	535	c.464C>T	c.(463-465)TCA>TTA	p.S155L		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	155	HTH La-type RNA-binding.				RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						AAGGACCACTGAATACTTCAA	0.502													24	80					0	0	1	0	0
LARP6	55323	broad.mit.edu	37	15	71125438	71125438	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:71125438C>T	uc002ass.2	-	3	500	c.429G>A	c.(427-429)CGG>CGA	p.R143R		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	143	HTH La-type RNA-binding.				RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						TTCTCCAGTCCCGTGTAAGAT	0.483													24	80					0	0	1	0	0
LARP6	55323	broad.mit.edu	37	15	71128715	71128715	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:71128715C>T	uc002ass.2	-	2	401	c.330G>A	c.(328-330)GAG>GAA	p.E110E		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	110	HTH La-type RNA-binding.				RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						AGGCGTCCTTCTCCAGGTTTT	0.483													90	107					0	0	1	0	0
LRRC49	54839	broad.mit.edu	37	15	71256160	71256160	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:71256160C>T	uc002asw.2	+	9	1057	c.810C>T	c.(808-810)TCC>TCT	p.S270S	LRRC49_uc002asu.2_Silent_p.S260S|LRRC49_uc002asx.2_Silent_p.S226S|LRRC49_uc010ukf.1_Silent_p.S275S|LRRC49_uc002asy.2_5'UTR|LRRC49_uc002asz.2_Silent_p.S242S	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	270						cytoplasm|microtubule				ovary(1)	1						ACTCTTCTTCCCTCTCGGACA	0.423													53	332					0	0	1	0	0
LRRC49	54839	broad.mit.edu	37	15	71329576	71329576	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:71329576G>A	uc002asw.2	+	15	2009	c.1762G>A	c.(1762-1764)GAA>AAA	p.E588K	LRRC49_uc002asu.2_Missense_Mutation_p.E578K|LRRC49_uc002asx.2_Missense_Mutation_p.E544K|LRRC49_uc010ukf.1_Missense_Mutation_p.E593K|LRRC49_uc002asy.2_Missense_Mutation_p.E294K|LRRC49_uc002asz.2_Missense_Mutation_p.E560K	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	588						cytoplasm|microtubule				ovary(1)	1						TATTATCAACGAAGAAAATAA	0.313													50	171					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	71535177	71535177	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:71535177C>T	uc002atb.1	+	4	733	c.654C>T	c.(652-654)GTC>GTT	p.V218V	THSD4_uc002atd.1_5'UTR	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	218	TSP type-1 1.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						CCCACCAGGTCCCCCAACATG	0.602													34	85					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	71535217	71535217	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:71535217C>T	uc002atb.1	+	4	773	c.694C>T	c.(694-696)CGC>TGC	p.R232C	THSD4_uc002atd.1_5'UTR	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	232	TSP type-1 1.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						CAGTGGCCCTCGCTCTGGACT	0.577													22	99					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72020966	72020966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72020966G>A	uc002atb.1	+	8	1515	c.1436G>A	c.(1435-1437)GGG>GAG	p.G479E	THSD4_uc002atd.1_Missense_Mutation_p.G153E|THSD4_uc010ukg.1_Missense_Mutation_p.G119E|THSD4_uc002ate.2_Missense_Mutation_p.G119E	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	479						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						GAGGGCGGAGGGACCATGTTC	0.512													20	238					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72023549	72023549	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72023549G>A	uc002atb.1	+	9	1702	c.1623G>A	c.(1621-1623)AGG>AGA	p.R541R	THSD4_uc002atd.1_3'UTR|THSD4_uc010ukg.1_Silent_p.R181R|THSD4_uc002ate.2_Silent_p.R181R	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	541						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						CACCCCACAGGAGACCAGGTA	0.557											OREG0023247	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	76					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72039235	72039235	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72039235C>T	uc002atb.1	+	12	2174	c.2095C>T	c.(2095-2097)CGC>TGC	p.R699C	THSD4_uc002ate.2_Missense_Mutation_p.R339C	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	699	TSP type-1 2.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						CATGCAGCACCGCCAGGTTCT	0.622													12	72					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72040764	72040764	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72040764C>T	uc002atb.1	+	13	2325	c.2246C>T	c.(2245-2247)TCG>TTG	p.S749L	THSD4_uc002ate.2_Missense_Mutation_p.S389L	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	749	TSP type-1 3.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						TTTCAGTGCTCGGTGCCCTGC	0.577													13	66					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72050250	72050250	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72050250G>A	uc002atb.1	+	14	2504	c.2425G>A	c.(2425-2427)GAG>AAG	p.E809K	THSD4_uc002ate.2_Missense_Mutation_p.E449K|THSD4_uc002atg.1_Missense_Mutation_p.E12K	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	809	TSP type-1 4.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						GTGCTCAGCGGAGTGTGGGGC	0.612													20	74					0	0	1	0	0
NR2E3	10002	broad.mit.edu	37	15	72104690	72104690	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72104690G>A	uc002ati.2	+	5	776	c.586G>A	c.(586-588)GAT>AAT	p.D196N	NR2E3_uc002ath.1_Missense_Mutation_p.D196N	NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	196					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						TGAGAATATTGATGTCACCAG	0.582													46	138					0	0	1	0	0
NR2E3	10002	broad.mit.edu	37	15	72105971	72105971	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72105971A>G	uc002ati.2	+	7	1179	c.989A>G	c.(988-990)AAG>AGG	p.K330R	NR2E3_uc002ath.1_Missense_Mutation_p.K330R	NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	330					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						GTCCTCTTCAAGCCAGGTAAC	0.567													11	67					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72146759	72146759	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72146759G>A	uc002atl.3	-	35	6778	c.6305C>T	c.(6304-6306)TCG>TTG	p.S2102L	MYO9A_uc002atj.2_Missense_Mutation_p.S15L|MYO9A_uc002atk.2_Missense_Mutation_p.S897L	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	2102	Phorbol-ester/DAG-type 2.|Tail.|Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TTTATTAGTCGAACCAGACTT	0.363													83	259					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72286851	72286851	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72286851G>A	uc002atl.3	-	10	2019	c.1546C>T	c.(1546-1548)CAT>TAT	p.H516Y	MYO9A_uc010biq.2_Missense_Mutation_p.H111Y|MYO9A_uc002ato.2_Missense_Mutation_p.H516Y|MYO9A_uc002atn.1_Missense_Mutation_p.H497Y	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	516	Myosin head-like 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						AGAAGTGCATGATTAATTCGA	0.338													52	123					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72324887	72324887	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72324887G>A	uc002atl.3	-	3	1356	c.883C>T	c.(883-885)CGT>TGT	p.R295C	MYO9A_uc010biq.2_5'UTR|MYO9A_uc002ato.2_Missense_Mutation_p.R295C|MYO9A_uc002atn.1_Missense_Mutation_p.R295C	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	295	Myosin head-like 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TTCCCAAAACGACTTGAATTG	0.333													12	78					0	0	1	0	0
SENP8	123228	broad.mit.edu	37	15	72432043	72432043	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72432043C>T	uc002atp.2	+	2	178	c.79C>T	c.(79-81)CTC>TTC	p.L27F		NM_145204	NP_660205	Q96LD8	SENP8_HUMAN	SUMO/sentrin specific peptidase family member 8	27	Protease.				proteolysis		cysteine-type peptidase activity|protein binding			ovary(1)|skin(1)	2						GCCAAGCTGGCTCAATGACCA	0.488													66	205					0	0	1	0	0
SENP8	123228	broad.mit.edu	37	15	72432138	72432138	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72432138C>T	uc002atp.2	+	2	273	c.174C>T	c.(172-174)GTC>GTT	p.V58V		NM_145204	NP_660205	Q96LD8	SENP8_HUMAN	SUMO/sentrin specific peptidase family member 8	58	Protease.			V->A: No effect on activity.	proteolysis		cysteine-type peptidase activity|protein binding			ovary(1)|skin(1)	2						GCCCTGAAGTCACCCAGTTCA	0.463													96	129					0	0	1	0	0
SENP8	123228	broad.mit.edu	37	15	72432292	72432292	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72432292C>T	uc002atp.2	+	2	427	c.328C>T	c.(328-330)CAA>TAA	p.Q110*		NM_145204	NP_660205	Q96LD8	SENP8_HUMAN	SUMO/sentrin specific peptidase family member 8	110	Protease.				proteolysis		cysteine-type peptidase activity|protein binding			ovary(1)|skin(1)	2						GGTCTACCTCCAAGATAAAAA	0.443													23	99					0	0	1	0	0
GRAMD2	196996	broad.mit.edu	37	15	72458995	72458995	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72458995C>T	uc002atq.2	-	7	545	c.521G>A	c.(520-522)AGG>AAG	p.R174K	GRAMD2_uc010bis.2_Missense_Mutation_p.R174K|GRAMD2_uc010ukh.1_5'Flank	NM_001012642	NP_001012660	Q8IUY3	GRAM2_HUMAN	GRAM domain containing 2	174						integral to membrane					0						GCAGACTCTCCTCAGCAGGTC	0.552													13	99					0	0	1	0	0
GRAMD2	196996	broad.mit.edu	37	15	72462204	72462204	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72462204C>T	uc002atq.2	-	2	142	c.118G>A	c.(118-120)GAG>AAG	p.E40K	GRAMD2_uc010bis.2_Missense_Mutation_p.E40K	NM_001012642	NP_001012660	Q8IUY3	GRAM2_HUMAN	GRAM domain containing 2	40						integral to membrane					0						TCCGGGGGCTCCTCAACTCTG	0.507													91	91					0	0	1	0	0
PKM2	5315	broad.mit.edu	37	15	72492920	72492920	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72492920G>A	uc002atx.1	-	10	1625	c.1384C>T	c.(1384-1386)CAG>TAG	p.Q462*	GRAMD2_uc002atq.2_5'Flank|GRAMD2_uc010bis.2_5'Flank|PKM2_uc002atr.1_5'UTR|PKM2_uc002ats.1_Nonsense_Mutation_p.Q129*|PKM2_uc002att.1_Nonsense_Mutation_p.Q228*|PKM2_uc002atu.1_Nonsense_Mutation_p.Q228*|PKM2_uc010bit.1_Nonsense_Mutation_p.Q467*|PKM2_uc010uki.1_Nonsense_Mutation_p.Q536*|PKM2_uc002atv.1_Nonsense_Mutation_p.Q497*|PKM2_uc002atw.1_Nonsense_Mutation_p.Q462*|PKM2_uc002aty.1_Nonsense_Mutation_p.Q462*|PKM2_uc010ukj.1_Nonsense_Mutation_p.Q447*|PKM2_uc010ukk.1_Nonsense_Mutation_p.Q388*|PKM2_uc010biu.1_Nonsense_Mutation_p.Q483*	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	462	Interaction with POU5F1.				glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	AGGTGGGCCTGACGAGCTGTC	0.617													9	109					0	0	1	0	0
PKM2	5315	broad.mit.edu	37	15	72509755	72509755	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72509755G>A	uc002atx.1	-	3	482	c.241C>T	c.(241-243)CAT>TAT	p.H81Y	PKM2_uc010bit.1_Missense_Mutation_p.H86Y|PKM2_uc010uki.1_Missense_Mutation_p.H155Y|PKM2_uc002atv.1_Missense_Mutation_p.H116Y|PKM2_uc002atw.1_Missense_Mutation_p.H81Y|PKM2_uc002aty.1_Missense_Mutation_p.H81Y|PKM2_uc010ukj.1_Intron|PKM2_uc010ukk.1_Intron|PKM2_uc010biu.1_Missense_Mutation_p.H102Y|PKM2_uc002atz.1_RNA	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	81					glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	CTCACCTCATGAGTTCCATGA	0.507													34	76					0	0	1	0	0
PARP6	56965	broad.mit.edu	37	15	72548855	72548855	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72548855G>A	uc002auc.2	-	13	1535	c.1076C>T	c.(1075-1077)CCC>CTC	p.P359L	PARP6_uc002aua.2_Missense_Mutation_p.P204L|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.P359L	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	359							NAD+ ADP-ribosyltransferase activity				0						CACCACAGAGGGATAAGGCTC	0.468													23	40					0	0	1	0	0
CELF6	60677	broad.mit.edu	37	15	72581617	72581617	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72581617G>A	uc002auh.2	-	8	1202	c.892C>T	c.(892-894)CCG>TCG	p.P298S	uc002aug.2_Intron|CELF6_uc002auk.3_RNA|CELF6_uc010biv.1_RNA|CELF6_uc010biw.2_Missense_Mutation_p.P185S|CELF6_uc010ukl.1_Missense_Mutation_p.P182S|CELF6_uc010ukm.1_Missense_Mutation_p.P298S|CELF6_uc002aui.2_Missense_Mutation_p.P404S|CELF6_uc002auj.2_Missense_Mutation_p.P185S	NM_052840	NP_443072	Q96J87	CELF6_HUMAN	bruno-like 6, RNA binding protein	298					mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3						CTGCCAGGCGGGGAGTTGGCT	0.537													5	8					0	0	1	0	0
HEXA	3073	broad.mit.edu	37	15	72638913	72638914	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72638913_72638914GG>AA	uc002aun.3	-	11	1491_1492	c.1284_1285CC>TT	c.(1282-1287)GGCCCT>GGTTCT	p.P429S	uc002aug.2_RNA|CELF6_uc002auk.3_Intron|HEXA_uc010ukn.1_Missense_Mutation_p.P440S|HEXA_uc002auo.3_Missense_Mutation_p.P292S|HEXA_uc010bix.2_Missense_Mutation_p.P429S|HEXA_uc010biy.2_Missense_Mutation_p.P292S|HEXA_uc010uko.1_Missense_Mutation_p.P255S|HEXA_uc010biz.1_RNA	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein	429					cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						TTCCAGTCAGGGCCATAGGATA	0.535													111	206					0	0	1	0	0
HEXA	3073	broad.mit.edu	37	15	72640430	72640430	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72640430G>A	uc002aun.3	-	9	1239	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F	uc002aug.2_Intron|CELF6_uc002auk.3_Intron|HEXA_uc010ukn.1_Silent_p.F355F|HEXA_uc002auo.3_Silent_p.F207F|HEXA_uc010bix.2_Silent_p.F344F|HEXA_uc010biy.2_Silent_p.F207F|HEXA_uc010uko.1_Silent_p.F170F|HEXA_uc010biz.1_RNA	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein	344					cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						AGTCCTCACCGAAGCCTTTCT	0.517													21	82					0	0	1	0	0
TMEM202	338949	broad.mit.edu	37	15	72698948	72698948	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72698948C>T	uc002auq.2	+	3	343	c.343C>T	c.(343-345)CTC>TTC	p.L115F	TMEM202_uc002aur.2_RNA	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	115						integral to membrane				central_nervous_system(1)|skin(1)	2						TGCAGATTATCTCCAATATTC	0.453													17	123					0	0	1	0	0
GOLGA6B	55889	broad.mit.edu	37	15	72958208	72958208	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72958208G>A	uc010uks.1	+	16	1823	c.1782G>A	c.(1780-1782)CAG>CAA	p.Q594Q	uc002aux.1_5'Flank|uc002auy.1_5'Flank	NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	594	Potential.										0						GGCTGGCCCAGAAGGAGGAGG	0.627													45	272					0	0	1	0	0
GOLGA6B	55889	broad.mit.edu	37	15	72958220	72958220	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72958220G>A	uc010uks.1	+	16	1835	c.1794G>A	c.(1792-1794)GAG>GAA	p.E598E	uc002aux.1_5'Flank|uc002auy.1_5'Flank	NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	598	Potential.										0						AGGAGGAGGAGATGAAGGTAG	0.627													32	321					0	0	1	0	0
HIGD2B	123346	broad.mit.edu	37	15	72968724	72968724	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:72968724C>T	uc002ava.2	-	3		c.516G>A				NR_002780				Homo sapiens HIG1 domain family, member 2B pseudogene, mRNA (cDNA clone IMAGE:5742106).												0						ATGCCTAGGCCACAGCTGCAG	0.343													6	25					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	73192245	73192245	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73192245C>T	uc002avl.1	-	1		c.447G>A								full-length cDNA clone CS0DI007YP06 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCTGCAGCTTCCTCCACAGCT	0.478													29	43					0	0	1	0	0
HCN4	10021	broad.mit.edu	37	15	73615396	73615396	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73615396C>T	uc002avp.2	-	8	4032	c.3038G>A	c.(3037-3039)GGG>GAG	p.G1013E		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	1013	Pro-rich.|Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		AGGGGAAGCCCCCCCAGAGGC	0.711													5	9					0	0	1	0	0
HCN4	10021	broad.mit.edu	37	15	73616252	73616252	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73616252C>T	uc002avp.2	-	8	3176	c.2182G>A	c.(2182-2184)GAC>AAC	p.D728N		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	728	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GAGTTGAGGTCGTGCTGGACT	0.592													9	115					0	0	1	0	0
HCN4	10021	broad.mit.edu	37	15	73617662	73617662	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73617662C>T	uc002avp.2	-	5	2708	c.1714G>A	c.(1714-1716)GAG>AAG	p.E572K		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	572	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		TCGCTTAGCTCGCCCAGGATG	0.677													22	79					0	0	1	0	0
HCN4	10021	broad.mit.edu	37	15	73635884	73635884	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73635884G>A	uc002avp.2	-	2	2045	c.1051C>T	c.(1051-1053)CCC>TCC	p.P351S		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	351	Helical; Name=Segment S3; (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		TAGTCCACGGGGATGGAGGAA	0.527													12	72					0	0	1	0	0
HCN4	10021	broad.mit.edu	37	15	73635892	73635892	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73635892G>A	uc002avp.2	-	2	2037	c.1043C>T	c.(1042-1044)TCC>TTC	p.S348F		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	348	Helical; Name=Segment S3; (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GGGGATGGAGGAAATGAAATC	0.537													22	62					0	0	1	0	0
HCN4	10021	broad.mit.edu	37	15	73636011	73636011	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73636011G>A	uc002avp.2	-	2	1918	c.924C>T	c.(922-924)ATC>ATT	p.I308I		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	308	Helical; Name=Segment S2; (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GGACCAAGTCGATGAGGAAGA	0.488													10	58					0	0	1	0	0
HCN4	10021	broad.mit.edu	37	15	73659854	73659854	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73659854C>T	uc002avp.2	-	1	1752	c.758G>A	c.(757-759)TGG>TAG	p.W253*		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	253	Involved in subunit assembly (By similarity).|Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GTGGATAATCCAAAATCCGGC	0.607													21	87					0	0	1	0	0
NPTN	27020	broad.mit.edu	37	15	73862580	73862580	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73862580G>A	uc002avs.2	-	6	1222	c.1025C>T	c.(1024-1026)CCT>CTT	p.P342L	NPTN_uc010bjc.2_Missense_Mutation_p.P342L|NPTN_uc002avt.2_Missense_Mutation_p.P226L|NPTN_uc002avr.2_Missense_Mutation_p.P226L|NPTN_uc010ula.1_Missense_Mutation_p.P137L	NM_012428	NP_036560	Q9Y639	NPTN_HUMAN	neuroplastin isoform b precursor	342	Helical; (Potential).				elevation of cytosolic calcium ion concentration|homophilic cell adhesion|long-term synaptic potentiation|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of long-term neuronal synaptic plasticity|positive regulation of neuron projection development|positive regulation of protein phosphorylation	integral to membrane|plasma membrane|presynaptic membrane	cell adhesion molecule binding|type 1 fibroblast growth factor receptor binding				0						TCCCAAGAAAGGCCAGAGTGG	0.527													17	129					0	0	1	0	0
CD276	80381	broad.mit.edu	37	15	73996202	73996202	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73996202C>T	uc002avv.1	+	5	1170	c.936C>T	c.(934-936)GCC>GCT	p.A312A	CD276_uc010bjd.1_Silent_p.A166A|CD276_uc002avu.1_Silent_p.A312A|CD276_uc002avw.1_Intron|CD276_uc010ulb.1_Silent_p.A258A|CD276_uc002avx.2_5'Flank	NM_001024736	NP_001019907	Q5ZPR3	CD276_HUMAN	CD276 antigen isoform a	312	Ig-like V-type 2.|Extracellular (Potential).				cell proliferation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of T cell proliferation|regulation of immune response|T cell activation	external side of plasma membrane|integral to membrane	receptor binding			skin(1)	1						ACCGCACGGCCCTCTTCCCGG	0.642													17	55					0	0	1	0	0
CD276	80381	broad.mit.edu	37	15	73996519	73996519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:73996519C>T	uc002avv.1	+	6	1309	c.1075C>T	c.(1075-1077)CCC>TCC	p.P359S	CD276_uc010bjd.1_Missense_Mutation_p.P213S|CD276_uc002avu.1_Missense_Mutation_p.P359S|CD276_uc002avw.1_Missense_Mutation_p.P141S|CD276_uc010ulb.1_Missense_Mutation_p.P305S|CD276_uc002avx.2_RNA	NM_001024736	NP_001019907	Q5ZPR3	CD276_HUMAN	CD276 antigen isoform a	359	Extracellular (Potential).				cell proliferation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of T cell proliferation|regulation of immune response|T cell activation	external side of plasma membrane|integral to membrane	receptor binding			skin(1)	1						ACCTCCAGCTCCCTACTCGAA	0.637													6	22					0	0	1	0	0
TBC1D21	161514	broad.mit.edu	37	15	74174023	74174023	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74174023C>T	uc002avz.2	+	3	290	c.207C>T	c.(205-207)TTC>TTT	p.F69F	TBC1D21_uc010ulc.1_Silent_p.F33F	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	69	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(2)	2						CCTGGAAATTCCTCACGGGCT	0.597													13	48					0	0	1	0	0
TBC1D21	161514	broad.mit.edu	37	15	74177154	74177154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74177154C>T	uc002avz.2	+	5	483	c.400C>T	c.(400-402)CCC>TCC	p.P134S	TBC1D21_uc010ulc.1_Missense_Mutation_p.P98S	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	134	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(2)	2						TGACAAAGATCCCCTGGGCAA	0.522													16	40					0	0	1	0	0
LOXL1	4016	broad.mit.edu	37	15	74238812	74238812	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74238812C>T	uc002awc.1	+	3	1602	c.1266C>T	c.(1264-1266)TTC>TTT	p.F422F	LOXL1_uc002awd.1_5'Flank	NM_005576	NP_005567	Q08397	LOXL1_HUMAN	lysyl oxidase-like 1 preproprotein	422	Lysyl-oxidase like.				protein deamination	extracellular space	copper ion binding				0						TACTGCGCTTCCCCCAGCGCG	0.677													9	46					0	0	1	0	0
STOML1	9399	broad.mit.edu	37	15	74281509	74281509	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74281509G>A	uc002awe.2	-	3	401	c.330C>T	c.(328-330)TTC>TTT	p.F110F	STOML1_uc002awf.2_Silent_p.F110F|STOML1_uc010bje.2_Silent_p.F110F|STOML1_uc010uld.1_Silent_p.F68F|STOML1_uc002awh.2_Intron|STOML1_uc002awg.2_Intron|STOML1_uc002awi.2_Silent_p.F23F	NM_004809	NP_004800	Q9UBI4	STML1_HUMAN	stomatin (EPB72)-like 1	110	Cytoplasmic (Potential).					integral to membrane	sterol binding			skin(1)	1						AGGAGTCAATGAAGGGCAAGA	0.597													25	57					0	0	1	0	0
GOLGA6A	342096	broad.mit.edu	37	15	74364582	74364582	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74364582C>T	uc002axa.1	-	14	1611	c.1570G>A	c.(1570-1572)GAC>AAC	p.D524N	uc010ulg.1_5'Flank	NM_001038640	NP_001033729	Q9NYA3	GOG6A_HUMAN	golgi autoantigen, golgin subfamily a, 6	524	Potential.										0						CTCTCCAGGTCCTCTGGGATG	0.627													10	176					0	0	1	0	0
GOLGA6A	342096	broad.mit.edu	37	15	74364604	74364604	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74364604C>T	uc002axa.1	-	14	1589	c.1548G>A	c.(1546-1548)CGG>CGA	p.R516R	uc010ulg.1_5'Flank	NM_001038640	NP_001033729	Q9NYA3	GOG6A_HUMAN	golgi autoantigen, golgin subfamily a, 6	516	Potential.										0						TTGGCGTGGGCCGAGGCGCCT	0.632													17	175					0	0	1	0	0
GOLGA6A	342096	broad.mit.edu	37	15	74367329	74367329	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74367329G>A	uc002axa.1	-	11	902	c.861C>T	c.(859-861)TCC>TCT	p.S287S		NM_001038640	NP_001033729	Q9NYA3	GOG6A_HUMAN	golgi autoantigen, golgin subfamily a, 6	287	Potential.										0						GGGGCGCCAGGGATGGGGGCT	0.552													29	108					0	0	1	0	0
ISLR	3671	broad.mit.edu	37	15	74467317	74467317	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74467317G>A	uc002axg.1	+	2	400	c.118G>A	c.(118-120)GAC>AAC	p.D40N	ISLR_uc002axh.1_Missense_Mutation_p.D40N	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	40	LRRNT.				cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TGCCTACCGCGACCTAGAATC	0.652													29	102					0	0	1	0	0
ISLR	3671	broad.mit.edu	37	15	74467432	74467432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74467432C>T	uc002axg.1	+	2	515	c.233C>T	c.(232-234)TCG>TTG	p.S78L	ISLR_uc002axh.1_Missense_Mutation_p.S78L	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	78	LRR 2.				cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CTGCTGCAGTCGCTGTGGCTG	0.647													9	91					0	0	1	0	0
ISLR	3671	broad.mit.edu	37	15	74467511	74467511	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74467511C>T	uc002axg.1	+	2	594	c.312C>T	c.(310-312)GAC>GAT	p.D104D	ISLR_uc002axh.1_Silent_p.D104D	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	104	LRR 3.				cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						AGAGCCTGGACCTCAGCCACA	0.607													21	64					0	0	1	0	0
ISLR	3671	broad.mit.edu	37	15	74467808	74467808	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74467808G>A	uc002axg.1	+	2	891	c.609G>A	c.(607-609)CCG>CCA	p.P203P	ISLR_uc002axh.1_Silent_p.P203P	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	203	LRRCT.				cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TGTCCATCCCGGAGCAGGACA	0.662													14	49					0	0	1	0	0
ISLR	3671	broad.mit.edu	37	15	74468459	74468459	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74468459C>A	uc002axg.1	+	2	1542	c.1260C>A	c.(1258-1260)CTC>CTA	p.L420L	ISLR_uc002axh.1_Silent_p.L420L	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	420					cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						AAAGCCTCCTCCTCTTCTTCT	0.637													34	31					9.17885e-22	9.23008e-22	1	1	0
CCDC33	80125	broad.mit.edu	37	15	74536339	74536339	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74536339C>T	uc002axo.2	+	2	429	c.35C>T	c.(34-36)CCA>CTA	p.P12L		NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	215							protein binding			ovary(3)|skin(2)	5						ACTGAAGACCCAGAGGAGCCC	0.418													20	153					0	0	1	0	0
CCDC33	80125	broad.mit.edu	37	15	74536357	74536357	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74536357C>T	uc002axo.2	+	2	447	c.53C>T	c.(52-54)GCC>GTC	p.A18V		NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	221							protein binding			ovary(3)|skin(2)	5						CCCCTGATCGCCTCCCAGAGC	0.473													34	159					0	0	1	0	0
CCDC33	80125	broad.mit.edu	37	15	74536434	74536434	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74536434G>A	uc002axo.2	+	2	524	c.130G>A	c.(130-132)GCT>ACT	p.A44T		NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	247	C2.						protein binding			ovary(3)|skin(2)	5						CCTCCATGGGGCTACCAACCT	0.617													19	101					0	0	1	0	0
CCDC33	80125	broad.mit.edu	37	15	74565190	74565190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74565190G>A	uc002axo.2	+	7	1111	c.717G>A	c.(715-717)ATG>ATA	p.M239I	CCDC33_uc002axp.2_Missense_Mutation_p.M61I	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	442							protein binding			ovary(3)|skin(2)	5						CGTCCATGATGAACTTTGACG	0.602													24	103					0	0	1	0	0
CCDC33	80125	broad.mit.edu	37	15	74622633	74622633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74622633G>A	uc002axo.2	+	12	1788	c.1394G>A	c.(1393-1395)AGC>AAC	p.S465N	CCDC33_uc002axp.2_Missense_Mutation_p.S287N|CCDC33_uc002axq.2_Missense_Mutation_p.S58N|CCDC33_uc002axr.2_Missense_Mutation_p.S58N	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	668	Potential.						protein binding			ovary(3)|skin(2)	5						ATACTGAGGAGCCGCCTGGCC	0.627													4	25					0	0	1	0	0
CCDC33	80125	broad.mit.edu	37	15	74623563	74623563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74623563G>A	uc002axo.2	+	15	2091	c.1697G>A	c.(1696-1698)CGG>CAG	p.R566Q	CCDC33_uc002axp.2_Missense_Mutation_p.R388Q|CCDC33_uc002axq.2_Missense_Mutation_p.R159Q|CCDC33_uc002axr.2_Missense_Mutation_p.R159Q	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	769	Potential.						protein binding			ovary(3)|skin(2)	5						AAGATGGAGCGGGTGCTGGAG	0.642													10	57					0	0	1	0	0
CCDC33	80125	broad.mit.edu	37	15	74625024	74625024	+	Silent	SNP	C	T	T	rs149610315		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74625024C>T	uc002axo.2	+	16	2170	c.1776C>T	c.(1774-1776)TTC>TTT	p.F592F	CCDC33_uc002axp.2_Silent_p.F414F|CCDC33_uc002axq.2_Silent_p.F185F|CCDC33_uc002axr.2_Silent_p.F185F	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	795							protein binding	p.F592F(1)		ovary(3)|skin(2)	5						CTCTAGGCTTCCCTATGCTCT	0.562													44	148					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74630995	74630995	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74630995G>A	uc002axt.2	-	8	1506	c.1351C>T	c.(1351-1353)CGG>TGG	p.R451W	CYP11A1_uc002axs.2_Missense_Mutation_p.R293W|CYP11A1_uc010bjm.1_Missense_Mutation_p.R293W|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Missense_Mutation_p.R369W	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	451					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	CCCAAGTTCCGGAAGTAGGTG	0.557													85	102					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74631996	74631996	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74631996G>A	uc002axt.2	-	6	1244	c.1089C>T	c.(1087-1089)GCC>GCT	p.A363A	CYP11A1_uc002axs.2_Silent_p.A205A|CYP11A1_uc010bjm.1_Silent_p.A205A|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Intron|CYP11A1_uc010bjp.1_RNA|CYP11A1_uc010ulj.1_Silent_p.A143A	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	363					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	TGTCTCCCTGGGCCTGGTGCC	0.612													36	35					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74635414	74635414	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74635414G>A	uc002axt.2	-	5	1049	c.894C>T	c.(892-894)TAC>TAT	p.Y298Y	CYP11A1_uc002axs.2_Silent_p.Y140Y|CYP11A1_uc010bjm.1_Silent_p.Y140Y|CYP11A1_uc010bjn.1_Intron|CYP11A1_uc010bjo.1_Silent_p.Y298Y|CYP11A1_uc010bjp.1_Intron|CYP11A1_uc010ulj.1_Silent_p.Y78Y	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	298					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	GGATGCCACGGTAATCGTGGT	0.512													81	82					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74635433	74635433	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74635433C>T	uc002axt.2	-	5	1030	c.875G>A	c.(874-876)GGA>GAA	p.G292E	CYP11A1_uc002axs.2_Missense_Mutation_p.G134E|CYP11A1_uc010bjm.1_Missense_Mutation_p.G134E|CYP11A1_uc010bjn.1_Intron|CYP11A1_uc010bjo.1_Missense_Mutation_p.G292E|CYP11A1_uc010bjp.1_Intron|CYP11A1_uc010ulj.1_Missense_Mutation_p.G72E	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	292					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	GTGAACACTTCCTTTCTGTCT	0.517													76	83					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74640336	74640336	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74640336G>A	uc002axt.2	-	2	485	c.330C>T	c.(328-330)CTC>CTT	p.L110L	CYP11A1_uc002axs.2_5'UTR|CYP11A1_uc010bjm.1_Intron|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Silent_p.L110L|CYP11A1_uc010ulj.1_5'UTR|CYP11A1_uc010bjq.2_Silent_p.L110L	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	110					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	CGGACTTAAAGAGAAGGGCCA	0.502													14	66					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74659801	74659801	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74659801G>A	uc002axt.2	-	1	281	c.126C>T	c.(124-126)ACC>ACT	p.T42T	CYP11A1_uc002axs.2_5'Flank|CYP11A1_uc010bjm.1_5'Flank|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Silent_p.T42T|CYP11A1_uc010ulj.1_5'UTR|CYP11A1_uc010bjq.2_Silent_p.T42T	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	42					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	GAGGACTGCGGGTGGAGATGC	0.622													52	57					0	0	1	0	0
UBL7	84993	broad.mit.edu	37	15	74740913	74740913	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74740913G>A	uc002axw.1	-	10	1073	c.911C>T	c.(910-912)TCC>TTC	p.S304F	UBL7_uc002axx.1_Missense_Mutation_p.S344F|UBL7_uc010bjr.1_Missense_Mutation_p.S195F|UBL7_uc002axy.1_Missense_Mutation_p.S304F|UBL7_uc002axz.1_Missense_Mutation_p.S304F	NM_032907	NP_116296	Q96S82	UBL7_HUMAN	ubiquitin-like 7	304							protein binding			ovary(1)	1						GACACCAGAGGACATTGGTGA	0.552													79	293					0	0	1	0	0
ARID3B	10620	broad.mit.edu	37	15	74883703	74883703	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:74883703C>T	uc002aye.2	+	6	1294	c.1093C>T	c.(1093-1095)CTT>TTT	p.L365F	ARID3B_uc002ayd.2_Missense_Mutation_p.L365F|ARID3B_uc010bjs.1_Missense_Mutation_p.L70F	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	365	Interaction with RB1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						CTTTCCCATCCTTGGGCTTGG	0.622													31	171					0	0	1	0	0
CYP1A1	1543	broad.mit.edu	37	15	75013558	75013558	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75013558G>A	uc002ayp.3	-	5	1270	c.1148C>T	c.(1147-1149)CCC>CTC	p.P383L	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Missense_Mutation_p.P119L|CYP1A1_uc010bjx.2_Missense_Mutation_p.P119L|CYP1A1_uc002ayq.3_Missense_Mutation_p.P383L|CYP1A1_uc010bjy.2_Missense_Mutation_p.P383L|CYP1A1_uc010bjz.1_Missense_Mutation_p.P119L	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	383					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	GATGGTGAAGGGGACGAAGGA	0.577									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				44	147					0	0	1	0	0
CYP1A1	1543	broad.mit.edu	37	15	75015177	75015177	+	Missense_Mutation	SNP	C	T	T	rs77425771		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75015177C>T	uc002ayp.3	-	2	384	c.262G>A	c.(262-264)GGC>AGC	p.G88S	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Intron|CYP1A1_uc010bjx.2_Intron|CYP1A1_uc002ayq.3_Missense_Mutation_p.G88S|CYP1A1_uc010bjy.2_Missense_Mutation_p.G88S|CYP1A1_uc010bjz.1_Intron	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	88					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	GTGTCCAGGCCGCTCAGCACC	0.617									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				20	67					0	0	1	0	0
CYP1A2	1544	broad.mit.edu	37	15	75042352	75042352	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75042352G>A	uc002ayr.1	+	2	337	c.273G>A	c.(271-273)CTG>CTA	p.L91L		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	91					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	TGAGCCGCCTGGACACCATCC	0.652													14	85					0	0	1	0	0
CYP1A2	1544	broad.mit.edu	37	15	75042757	75042757	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75042757C>T	uc002ayr.1	+	2	742	c.678C>T	c.(676-678)TTC>TTT	p.F226F		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	226		Substrate (Probable).			alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	CTCATGAGTTCGTGGAGACTG	0.572													38	252					0	0	1	0	0
LMAN1L	79748	broad.mit.edu	37	15	75108826	75108826	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75108826C>T	uc002ayt.1	+	3	391	c.389C>T	c.(388-390)TCG>TTG	p.S130L	LMAN1L_uc010bkd.2_Missense_Mutation_p.S58L|LMAN1L_uc010ulo.1_Intron|LMAN1L_uc010bke.1_Missense_Mutation_p.S130L	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	130	Lumenal (Potential).|L-type lectin-like.					ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						GGGCTGGCTTCGTGGGACGGC	0.522													94	67					0	0	1	0	0
LMAN1L	79748	broad.mit.edu	37	15	75112979	75112979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75112979C>T	uc002ayt.1	+	8	780	c.778C>T	c.(778-780)CCC>TCC	p.P260S	LMAN1L_uc010bke.1_Missense_Mutation_p.P248S	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	260	Lumenal (Potential).					ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						CCCCTAGGTTCCCCCTCAGCC	0.642													40	183					0	0	1	0	0
CPLX3	594855	broad.mit.edu	37	15	75122494	75122494	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75122494C>T	uc002ayu.1	+	3	370	c.276C>T	c.(274-276)ATC>ATT	p.I92I		NM_001030005	NP_001025176	Q8WVH0	CPLX3_HUMAN	complexin 3 precursor	92						cell junction|synapse	syntaxin binding				0						AGAGCCAGATCCAGATGGCAG	0.612													17	66					0	0	1	0	0
CPLX3	594855	broad.mit.edu	37	15	75122542	75122542	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75122542G>A	uc002ayu.1	+	3	418	c.324G>A	c.(322-324)ATG>ATA	p.M108I		NM_001030005	NP_001025176	Q8WVH0	CPLX3_HUMAN	complexin 3 precursor	108						cell junction|synapse	syntaxin binding				0						TGGCCAAGATGATCGAGGAGG	0.622													19	95					0	0	1	0	0
CPLX3	594855	broad.mit.edu	37	15	75122545	75122545	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75122545C>T	uc002ayu.1	+	3	421	c.327C>T	c.(325-327)ATC>ATT	p.I109I		NM_001030005	NP_001025176	Q8WVH0	CPLX3_HUMAN	complexin 3 precursor	109						cell junction|synapse	syntaxin binding				0						CCAAGATGATCGAGGAGGACA	0.617													17	97					0	0	1	0	0
C15orf39	56905	broad.mit.edu	37	15	75499524	75499524	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75499524C>T	uc002azp.3	+	2	1455	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S	C15orf39_uc002azq.3_Missense_Mutation_p.P379S|C15orf39_uc002azr.3_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	379											0						ACTGAGTTTTCCTTATGCCCG	0.627													150	184					0	0	1	0	0
GOLGA6C	653641	broad.mit.edu	37	15	75557688	75557688	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75557688G>A	uc002azs.1	+	9	723	c.646G>A	c.(646-648)GAG>AAG	p.E216K	uc002azt.1_5'Flank	NM_001145224	NP_001138696	A6NDK9	GOG6C_HUMAN	golgi autoantigen, golgin subfamily a, 6D	228	Potential.									ovary(1)	1						AGTCCAGCTAGAGCGGGACGA	0.552													62	458					0	0	1	0	0
MAN2C1	4123	broad.mit.edu	37	15	75651681	75651681	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75651681G>A	uc002baf.2	-	17	2051	c.2034C>T	c.(2032-2034)TTC>TTT	p.F678F	MAN2C1_uc002bag.2_Silent_p.F678F|MAN2C1_uc002bah.2_Missense_Mutation_p.R683C|MAN2C1_uc010bkk.2_Silent_p.F579F	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	678					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						CTTGCACTACGAACACAGGCT	0.622													15	60					0	0	1	0	0
PTPN9	5780	broad.mit.edu	37	15	75761170	75761170	+	Silent	SNP	G	A	A	rs137863856	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75761170G>A	uc002bal.2	-	13	2230	c.1722C>T	c.(1720-1722)TTC>TTT	p.F574F		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	574	Tyrosine-protein phosphatase.					cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						CCTTCTCTGCGAACTCCAGGA	0.542													35	148					0	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75968884	75968884	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75968884C>T	uc002baw.2	-	10	6069	c.5976G>A	c.(5974-5976)GTG>GTA	p.V1992V		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1992	Extracellular (Potential).|CSPG 14.|Cysteine-containing.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GCCGCCCGCCCACCAGGAGAT	0.617													16	113					0	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75977862	75977862	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75977862G>A	uc002baw.2	-	4	4063	c.3970C>T	c.(3970-3972)CGC>TGC	p.R1324C		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1324	CSPG 8.|Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).|Interaction with COL5A1 (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GCCTCAGGGCGGGAGTGCAGG	0.682													5	17					0	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75983031	75983031	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:75983031G>A	uc002baw.2	-	3	468	c.375C>T	c.(373-375)GTC>GTT	p.V125V		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	125	Extracellular (Potential).|Globular or compact configuration stabilized by disulfide bonds.|Laminin G-like 1.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GAAACCCATCGACTGACAACG	0.627													39	101					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	76073015	76073015	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:76073015G>A	uc010umm.1	+	5	404	c.327G>A	c.(325-327)ATG>ATA	p.M109I	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		AAGCACAGATGGAGCAGTTAG	0.473													16	123					0	0	1	0	0
UBE2Q2	92912	broad.mit.edu	37	15	76175737	76175737	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:76175737C>T	uc002bbg.2	+	9	1242	c.856C>T	c.(856-858)CGA>TGA	p.R286*	UBE2Q2_uc002bbh.2_Nonsense_Mutation_p.R251*|UBE2Q2_uc010umn.1_Nonsense_Mutation_p.R270*|UBE2Q2_uc002bbi.2_Nonsense_Mutation_p.R167*	NM_173469	NP_775740	Q8WVN8	UB2Q2_HUMAN	ubiquitin-conjugating enzyme E2Q 2 isoform 1	286					protein K48-linked ubiquitination	cytoplasm	ATP binding|ubiquitin-protein ligase activity			ovary(2)	2						TCCATTTGTTCGAGTGGTGTT	0.249													28	81					0	0	1	0	0
FBXO22	26263	broad.mit.edu	37	15	76205550	76205550	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:76205550C>T	uc002bbk.2	+	3	391	c.286C>T	c.(286-288)CGC>TGC	p.R96C	FBXO22_uc002bbj.1_Missense_Mutation_p.R96C|FBXO22_uc002bbl.2_5'UTR	NM_147188	NP_671717	Q8NEZ5	FBX22_HUMAN	F-box only protein 22 isoform a	96					ubiquitin-dependent protein catabolic process		ubiquitin-protein ligase activity				0						GCAGAATGTTCGCATCTTACC	0.333													19	110					0	0	1	0	0
NRG4	145957	broad.mit.edu	37	15	76254290	76254290	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:76254290G>A	uc002bbo.2	-	4	314	c.130C>T	c.(130-132)CGT>TGT	p.R44C	NRG4_uc010bkm.1_RNA|NRG4_uc002bbn.2_RNA|NRG4_uc010bkn.2_RNA|NRG4_uc010bko.2_RNA|NRG4_uc002bbp.2_RNA	NM_138573	NP_612640	Q8WWG1	NRG4_HUMAN	neuregulin 4	44	Extracellular (Potential).|EGF-like.					extracellular region|integral to membrane|plasma membrane	growth factor activity				0						TCTTCACAACGAGCTCCTGTA	0.388													73	85					0	0	1	0	0
C15orf27	123591	broad.mit.edu	37	15	76426617	76426617	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:76426617C>T	uc002bbq.2	+	2	168	c.13C>T	c.(13-15)CCA>TCA	p.P5S	C15orf27_uc010bkp.2_5'UTR	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	5						integral to membrane					0						GGCTGTGGCTCCATCTTTCAA	0.463													62	64					0	0	1	0	0
SCAPER	49855	broad.mit.edu	37	15	77134191	77134191	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77134191G>A	uc002bby.2	-	4	336	c.277C>T	c.(277-279)CCT>TCT	p.P93S	SCAPER_uc002bbx.2_5'UTR|SCAPER_uc002bbz.1_5'UTR|SCAPER_uc002bca.1_5'UTR|SCAPER_uc002bcb.1_Missense_Mutation_p.P93S|SCAPER_uc002bcc.1_Missense_Mutation_p.P93S	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	92						endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						ATTTTCCGAGGGTGCCTTGTT	0.388													10	132					0	0	1	0	0
PSTPIP1	9051	broad.mit.edu	37	15	77310494	77310494	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77310494G>A	uc002bcf.2	+	2	492	c.42G>A	c.(40-42)AGG>AGA	p.R14R	PSTPIP1_uc010bkt.1_RNA|PSTPIP1_uc010umo.1_5'UTR|PSTPIP1_uc010bku.1_Silent_p.R5R|PSTPIP1_uc002bcg.2_Silent_p.R14R|PSTPIP1_uc010bkv.1_RNA|PSTPIP1_uc010bkw.1_Silent_p.R14R	NM_003978	NP_003969	O43586	PPIP1_HUMAN	proline-serine-threonine phosphatase interacting	14	FCH.				cell adhesion|signal transduction	cleavage furrow|lamellipodium|perinuclear region of cytoplasm	catalytic activity			ovary(1)	1						CACAGTGCAGGGACTTCACAG	0.607													3	6					0	0	1	0	0
PSTPIP1	9051	broad.mit.edu	37	15	77317640	77317640	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77317640C>T	uc002bcf.2	+	4	678	c.228C>T	c.(226-228)TCC>TCT	p.S76S	PSTPIP1_uc010bkt.1_RNA|PSTPIP1_uc010umo.1_5'UTR|PSTPIP1_uc010bku.1_Silent_p.S67S|PSTPIP1_uc002bcg.2_Silent_p.S76S|PSTPIP1_uc010bkv.1_RNA|PSTPIP1_uc010bkw.1_Silent_p.S76S	NM_003978	NP_003969	O43586	PPIP1_HUMAN	proline-serine-threonine phosphatase interacting	76	FCH.				cell adhesion|signal transduction	cleavage furrow|lamellipodium|perinuclear region of cytoplasm	catalytic activity			ovary(1)	1						TGAGGGCCTCCTTTGACTCCT	0.617													31	98					0	0	1	0	0
SGK269	79834	broad.mit.edu	37	15	77406534	77406534	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77406534G>A	uc002bcm.2	-	6	5513	c.5205C>T	c.(5203-5205)TCC>TCT	p.S1735S		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1735					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TACAACTGAGGGAGTCTGTAG	0.463													28	127					0	0	1	0	0
SGK269	79834	broad.mit.edu	37	15	77406945	77406945	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77406945G>A	uc002bcm.2	-	6	5102	c.4794C>T	c.(4792-4794)CTC>CTT	p.L1598L		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1598	Protein kinase.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TCTCATAGATGAGGATGCCTG	0.542													32	87					0	0	1	0	0
SGK269	79834	broad.mit.edu	37	15	77407037	77407038	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77407037_77407038GG>AA	uc002bcm.2	-	6	5009_5010	c.4701_4702CC>TT	c.(4699-4704)GACCCC>GATTCC	p.P1568S		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1568	Protein kinase.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		AGGATCTCGGGGTCCACCAGAT	0.535													43	149					0	0	1	0	0
SGK269	79834	broad.mit.edu	37	15	77425644	77425644	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77425644G>A	uc002bcm.2	-	5	4088	c.3780C>T	c.(3778-3780)CCC>CCT	p.P1260P		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1260					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		GTCTGCAAGAGGGCCCACGCC	0.527													49	135					0	0	1	0	0
SGK269	79834	broad.mit.edu	37	15	77471795	77471795	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77471795G>A	uc002bcm.2	-	3	2782	c.2474C>T	c.(2473-2475)CCT>CTT	p.P825L	SGK269_uc002bcn.2_Missense_Mutation_p.P825L	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	825	Pro-rich.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		CTCACCACTAGGCTGAGATGT	0.502													36	129					0	0	1	0	0
HMG20A	10363	broad.mit.edu	37	15	77756657	77756657	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77756657C>T	uc002bcr.2	+	4	366	c.165C>T	c.(163-165)CTC>CTT	p.L55L	HMG20A_uc002bcq.1_Silent_p.L55L|HMG20A_uc002bcs.2_Silent_p.L55L	NM_018200	NP_060670	Q9NP66	HM20A_HUMAN	high-mobility group 20A	55					chromatin modification	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						TGGAGGATCTCTCTCAAGGTC	0.448													29	86					0	0	1	0	0
LINGO1	84894	broad.mit.edu	37	15	77907015	77907015	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:77907015C>T	uc002bct.1	-	2	1286	c.1234G>A	c.(1234-1236)GAT>AAT	p.D412N	LINGO1_uc002bcu.1_Missense_Mutation_p.D406N	NM_032808	NP_116197	Q96FE5	LIGO1_HUMAN	leucine-rich repeat neuronal 6A	412	Extracellular (Potential).|LRRCT.|Ig-like C2-type.				negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)|lung(1)	2						AGTAGCACATCAGGGAAGTCC	0.652													4	32					0	0	1	0	0
LOC645752	645752	broad.mit.edu	37	15	78212139	78212139	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78212139C>T	uc010bky.2	-	10	800	c.36G>A	c.(34-36)AAG>AAA	p.K12K		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TCTTCTCTTCCTTTAATGTTC	0.552													57	364					0	0	1	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78316640	78316640	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78316640A>C	uc002bcy.3	-	6	1328	c.1328T>G	c.(1327-1329)CTC>CGC	p.L443R	TBC1D2B_uc010bla.2_Missense_Mutation_p.L443R	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	443	Potential.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						GGTCTCCATGAGCATTCCCAG	0.602													27	78					0	0	1	0	0
SH2D7	646892	broad.mit.edu	37	15	78393354	78393354	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78393354G>A	uc010blb.1	+	5	759	c.759G>A	c.(757-759)CGG>CGA	p.R253R		NM_001101404	NP_001094874	A6NKC9	SH2D7_HUMAN	SH2 domain containing 7	253											0						ACCAGGCACGGCTAGGCTTGG	0.607													17	56					0	0	1	0	0
SH2D7	646892	broad.mit.edu	37	15	78393515	78393515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78393515G>A	uc010blb.1	+	5	920	c.920G>A	c.(919-921)GGT>GAT	p.G307D		NM_001101404	NP_001094874	A6NKC9	SH2D7_HUMAN	SH2 domain containing 7	307											0						CCAGACCAGGGTCCCACAGAG	0.607													5	23					0	0	1	0	0
SH2D7	646892	broad.mit.edu	37	15	78393813	78393813	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78393813C>T	uc010blb.1	+	5	1218	c.1218C>T	c.(1216-1218)ATC>ATT	p.I406I		NM_001101404	NP_001094874	A6NKC9	SH2D7_HUMAN	SH2 domain containing 7	406											0						ACAAGAGGATCTCAGGGACCC	0.592													6	24					0	0	1	0	0
CIB2	10518	broad.mit.edu	37	15	78401619	78401619	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78401619C>T	uc002bdb.1	-	4	625	c.304G>A	c.(304-306)GCT>ACT	p.A102T	CIB2_uc002bdc.1_Missense_Mutation_p.A59T|CIB2_uc010ums.1_Missense_Mutation_p.A102T	NM_006383	NP_006374	O75838	CIB2_HUMAN	DNA-dependent protein kinase catalytic	102							calcium ion binding				0						TCTCGGGGAGCCGACTCGCAG	0.552													25	75					0	0	1	0	0
ACSBG1	23205	broad.mit.edu	37	15	78466040	78466040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78466040C>T	uc002bdh.2	-	13	2040	c.1984G>A	c.(1984-1986)GAA>AAA	p.E662K	ACSBG1_uc010umw.1_Missense_Mutation_p.E658K|ACSBG1_uc010umx.1_Missense_Mutation_p.E420K	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	662					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						ATCCCCTCTTCGATGGCCTGG	0.582													11	110					0	0	1	0	0
ACSBG1	23205	broad.mit.edu	37	15	78471031	78471031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78471031C>T	uc002bdh.2	-	11	1683	c.1627G>A	c.(1627-1629)GAA>AAA	p.E543K	ACSBG1_uc010umw.1_Missense_Mutation_p.E539K|ACSBG1_uc010umx.1_Missense_Mutation_p.E301K	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	543					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						AGCCAGCCTTCCTCGTCGATG	0.577													6	41					0	0	1	0	0
ACSBG1	23205	broad.mit.edu	37	15	78474955	78474955	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78474955C>T	uc002bdh.2	-	7	803	c.747G>A	c.(745-747)ATG>ATA	p.M249I	ACSBG1_uc010umw.1_Missense_Mutation_p.M245I|ACSBG1_uc010umx.1_Missense_Mutation_p.M7I|ACSBG1_uc010umy.1_Missense_Mutation_p.M142I	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	249					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						TGAATTCCTCCATCTGTAGCC	0.607													23	86					0	0	1	0	0
IREB2	3658	broad.mit.edu	37	15	78758726	78758726	+	Missense_Mutation	SNP	G	A	A	rs143720317		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78758726G>A	uc002bdr.2	+	5	686	c.524G>A	c.(523-525)CGA>CAA	p.R175Q	IREB2_uc010unb.1_5'UTR|IREB2_uc002bdq.2_Missense_Mutation_p.R175Q	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	175							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		ACTACCTGCCGAGGATCTTGT	0.498													46	60					0	0	1	0	0
IREB2	3658	broad.mit.edu	37	15	78778131	78778131	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78778131T>C	uc002bdr.2	+	13	1820	c.1658T>C	c.(1657-1659)GTT>GCT	p.V553A	IREB2_uc010unb.1_Missense_Mutation_p.V303A	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	553							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AGTGGGATGGTTACACATTAC	0.403													149	151					0	0	1	0	0
CHRNA3	1136	broad.mit.edu	37	15	78888958	78888958	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78888958C>T	uc002bec.2	-	6	1692	c.1506G>A	c.(1504-1506)AGG>AGA	p.R502R	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_Intron|CHRNA3_uc010blg.1_RNA	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	502					activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						ATGCATCTTCCCTGGCCATCA	0.493													21	71					0	0	1	0	0
CHRNA3	1136	broad.mit.edu	37	15	78894012	78894012	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78894012G>A	uc002bec.2	-	5	1158	c.972C>T	c.(970-972)TTC>TTT	p.F324F	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_Silent_p.F324F	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	324	Helical; (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						CGTTGAGCACGAAGACGGTGA	0.522													79	114					0	0	1	0	0
CHRNA3	1136	broad.mit.edu	37	15	78911186	78911186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78911186G>A	uc002bec.2	-	2	340	c.154C>T	c.(154-156)CCT>TCT	p.P52S	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_Missense_Mutation_p.P52S	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	52	Extracellular (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						TTGGCTACAGGCCGGATGATC	0.572											OREG0023334	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	109					0	0	1	0	0
CHRNB4	1143	broad.mit.edu	37	15	78921783	78921784	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78921783_78921784GG>AA	uc002bed.1	-	5	975_976	c.863_864CC>TT	c.(862-864)ACC>ATT	p.T288I	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Missense_Mutation_p.T106I	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	288	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						CATCGAGGGAGGTGGGTGGCAC	0.564													21	74					0	0	1	0	0
CHRNB4	1143	broad.mit.edu	37	15	78922032	78922032	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78922032G>A	uc002bed.1	-	5	727	c.615C>T	c.(613-615)GCC>GCT	p.A205A	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Silent_p.A23A	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	205	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						TCCCTGGGAGGGCCACTATGT	0.552													80	97					0	0	1	0	0
CHRNB4	1143	broad.mit.edu	37	15	78933433	78933433	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:78933433G>A	uc002bed.1	-	1	155	c.43C>T	c.(43-45)CTT>TTT	p.L15F	CHRNB4_uc002bee.1_Missense_Mutation_p.L15F|CHRNB4_uc010blh.1_Intron	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	15					regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						CGCCCGCAAAGGGCGACCAGG	0.711													7	16					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79051844	79051844	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79051844G>A	uc002bej.3	-	24	5191	c.4980C>T	c.(4978-4980)ATC>ATT	p.I1660I		NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1660	PLAC.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						ACTGGGTGCGGATGGTGGGCA	0.721													4	11					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058002	79058002	+	Silent	SNP	C	T	T	rs143941580		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79058002C>T	uc002bej.3	-	19	4462	c.4251G>A	c.(4249-4251)GCG>GCA	p.A1417A	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1417	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TCCAGTTTCCCGCTTGCCAGC	0.642													40	94					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058091	79058091	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79058091C>T	uc002bej.3	-	19	4373	c.4162G>A	c.(4162-4164)GTC>ATC	p.V1388I	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1388					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GTCTCAGGGACTCTGTGGCTG	0.682													7	75					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058160	79058160	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79058160G>A	uc002bej.3	-	19	4304	c.4093C>T	c.(4093-4095)CCT>TCT	p.P1365S	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1365					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GGCACCTCAGGGCTGAGGGAC	0.667													15	22					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79059007	79059007	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79059007C>T	uc002bej.3	-	19	3457	c.3246G>A	c.(3244-3246)GAG>GAA	p.E1082E	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1082					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GATCGGGCTCCTCAGAGGGCC	0.632													7	51					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79060533	79060533	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79060533G>A	uc002bej.3	-	17	2798	c.2587C>T	c.(2587-2589)CCC>TCC	p.P863S	ADAMTS7_uc010und.1_Missense_Mutation_p.P439S	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	863	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CGGCCCAGGGGGTCACAGTGC	0.552													10	11					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79066542	79066542	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79066542G>A	uc002bej.3	-	13	2188	c.1977C>T	c.(1975-1977)GCC>GCT	p.A659A	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Silent_p.A659A	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	659	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GGTCCCGGCTGGCTCGGACCT	0.662													5	13					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79067090	79067090	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79067090G>A	uc002bej.3	-	12	1963	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Silent_p.F584F	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	584	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TGCAGAGGCGGAAGCGCTTGC	0.637													16	70					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79092621	79092621	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79092621G>A	uc002bej.3	-	2	580	c.369C>T	c.(367-369)GCC>GCT	p.A123A	ADAMTS7_uc010und.1_Silent_p.A123A|ADAMTS7_uc002bek.1_Silent_p.A123A	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	123					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CCGGGGTGTGGGCCCGGATGT	0.587													8	29					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79092829	79092829	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79092829C>T	uc002bej.3	-	2	372	c.161G>A	c.(160-162)GGG>GAG	p.G54E	ADAMTS7_uc010und.1_Missense_Mutation_p.G54E|ADAMTS7_uc002bek.1_Missense_Mutation_p.G54E	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	54					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GAAGGAGCCCCCCGCGTCGAC	0.672													6	12					0	0	1	0	0
RASGRF1	5923	broad.mit.edu	37	15	79290481	79290481	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79290481C>T	uc002beq.2	-	20	3346	c.2971G>A	c.(2971-2973)GAG>AAG	p.E991K	RASGRF1_uc002bep.2_Missense_Mutation_p.E975K|RASGRF1_uc010blm.1_Missense_Mutation_p.E900K|RASGRF1_uc002ber.3_Missense_Mutation_p.E975K|RASGRF1_uc010unh.1_Missense_Mutation_p.E386K|RASGRF1_uc002beo.2_Missense_Mutation_p.E207K	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	993					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GTCAGGAGCTCCGGGTCGTGC	0.587													29	150					0	0	1	0	0
RASGRF1	5923	broad.mit.edu	37	15	79341864	79341864	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79341864C>T	uc002beq.2	-	4	973	c.598G>A	c.(598-600)GAC>AAC	p.D200N	RASGRF1_uc002bep.2_Missense_Mutation_p.D200N|RASGRF1_uc010blm.1_Missense_Mutation_p.D122N|RASGRF1_uc002ber.3_Missense_Mutation_p.D200N	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	200					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						ATGTCGCTGTCTTCATCGTTG	0.547													15	65					0	0	1	0	0
RASGRF1	5923	broad.mit.edu	37	15	79341870	79341870	+	Missense_Mutation	SNP	C	T	T	rs150981409	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79341870C>T	uc002beq.2	-	4	967	c.592G>A	c.(592-594)GAT>AAT	p.D198N	RASGRF1_uc002bep.2_Missense_Mutation_p.D198N|RASGRF1_uc010blm.1_Missense_Mutation_p.D120N|RASGRF1_uc002ber.3_Missense_Mutation_p.D198N	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	198					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CTGTCTTCATCGTTGGGGGCG	0.557													13	69					0	0	1	0	0
RASGRF1	5923	broad.mit.edu	37	15	79382659	79382659	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79382659C>T	uc002beq.2	-	1	557	c.182G>A	c.(181-183)CGG>CAG	p.R61Q	RASGRF1_uc002bep.2_Missense_Mutation_p.R61Q|RASGRF1_uc002ber.3_Missense_Mutation_p.R61Q	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	61	PH 1.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CCCCGAGGGCCGCGAGCTCGA	0.637													49	52					0	0	1	0	0
KIAA1024	23251	broad.mit.edu	37	15	79748963	79748963	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79748963C>T	uc002bew.1	+	2	549	c.474C>T	c.(472-474)TGC>TGT	p.C158C	KIAA1024_uc010unk.1_Silent_p.C158C	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	158						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						CGTCCAAGTGCCGGAAGATGG	0.567													21	71					0	0	1	0	0
KIAA1024	23251	broad.mit.edu	37	15	79750470	79750470	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79750470C>T	uc002bew.1	+	2	2056	c.1981C>T	c.(1981-1983)CCC>TCC	p.P661S	KIAA1024_uc010unk.1_Missense_Mutation_p.P661S	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	661						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						CAGTGCCTCTCCCCGGATGTT	0.527													108	132					0	0	1	0	0
KIAA1024	23251	broad.mit.edu	37	15	79760663	79760663	+	Silent	SNP	C	T	T	rs151300850	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:79760663C>T	uc002bew.1	+	4	2763	c.2688C>T	c.(2686-2688)ATC>ATT	p.I896I	KIAA1024_uc010unk.1_3'UTR	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	896	Helical; (Potential).					integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						CTGCTCTGATCGCTGCTGCGG	0.458													9	42					0	0	1	0	0
FAH	2184	broad.mit.edu	37	15	80460615	80460615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:80460615C>T	uc002bfj.2	+	8	645	c.563C>T	c.(562-564)CCC>CTC	p.P188L	FAH_uc002bfk.1_Missense_Mutation_p.P188L|FAH_uc002bfm.1_Missense_Mutation_p.P188L|FAH_uc002bfn.1_Missense_Mutation_p.P118L	NM_000137	NP_000128	P16930	FAAA_HUMAN	fumarylacetoacetase	188					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	fumarylacetoacetase activity|metal ion binding				0						GCTAAGCCTCCCGTATATGGT	0.493									Tyrosinemia_type_1				18	142					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81172151	81172151	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81172151C>T	uc002bfw.1	+	4	596	c.336C>T	c.(334-336)GCC>GCT	p.A112A	KIAA1199_uc010unn.1_Silent_p.A112A	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	112	G8.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CTGGGAGTGCCCTCTGCCCTT	0.517													10	92					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81173324	81173324	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81173324G>A	uc002bfw.1	+	5	724	c.464G>A	c.(463-465)GGA>GAA	p.G155E	KIAA1199_uc010unn.1_Missense_Mutation_p.G155E	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	155	G8.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GAGTTGCATGGACAGAAAAAG	0.502													39	159					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81181868	81181868	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81181868G>A	uc002bfw.1	+	9	1281	c.1021G>A	c.(1021-1023)GAG>AAG	p.E341K	KIAA1199_uc010unn.1_Missense_Mutation_p.E341K	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	341										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TAAAGGTGGGGAGAAAATTTC	0.428													56	79					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81201555	81201555	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81201555G>A	uc002bfw.1	+	13	1965	c.1705G>A	c.(1705-1707)GGA>AGA	p.G569R	KIAA1199_uc010unn.1_Missense_Mutation_p.G569R	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	569										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AGACGAAAGGGGAGGTTATGA	0.552													23	77					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81212437	81212437	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81212437C>T	uc002bfw.1	+	14	2060	c.1800C>T	c.(1798-1800)ATC>ATT	p.I600I	KIAA1199_uc010unn.1_Silent_p.I600I	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	600	PbH1 2.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCCTGCAGATCAAGGACGTTG	0.488													63	64					0	0	1	0	0
C15orf26	161502	broad.mit.edu	37	15	81427637	81427637	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81427637G>A	uc002bgb.2	+	2	123	c.96G>A	c.(94-96)AAG>AAA	p.K32K	C15orf26_uc010blp.1_Silent_p.K7K	NM_173528	NP_775799	Q6P656	CO026_HUMAN	hypothetical protein LOC161502	32											0						TCTTAGAGAAGAGAGACAAGG	0.303													18	113					0	0	1	0	0
IL16	3603	broad.mit.edu	37	15	81585035	81585035	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81585035C>T	uc002bgh.3	+	12	1935	c.1559C>T	c.(1558-1560)TCC>TTC	p.S520F	IL16_uc002bgc.2_RNA|IL16_uc010blq.1_Missense_Mutation_p.S520F|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.S562F|IL16_uc002bgg.2_Missense_Mutation_p.S520F|IL16_uc002bgi.1_5'UTR|IL16_uc002bgj.2_Missense_Mutation_p.S14F|IL16_uc002bgk.2_5'Flank	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	520					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						ATGTCTGGGTCCCCAGGGGGA	0.612													9	69					0	0	1	0	0
IL16	3603	broad.mit.edu	37	15	81592522	81592522	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81592522C>T	uc002bgh.3	+	14	3231	c.2855C>T	c.(2854-2856)TCT>TTT	p.S952F	IL16_uc010blq.1_Missense_Mutation_p.S906F|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.S994F|IL16_uc002bgg.2_Missense_Mutation_p.S952F|IL16_uc002bgi.1_Missense_Mutation_p.S342F|IL16_uc002bgj.2_Missense_Mutation_p.S446F|IL16_uc002bgk.2_Missense_Mutation_p.S251F|IL16_uc002bgl.1_Missense_Mutation_p.S251F|IL16_uc010unq.1_Missense_Mutation_p.S251F	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	952					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						GCTGAGGAATCTCAAGGCCCA	0.617													50	46					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81648080	81648080	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81648080C>T	uc002bgo.1	-	9	921	c.921G>A	c.(919-921)AAG>AAA	p.K307K	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Silent_p.K307K	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	307	Extracellular (Potential).					integral to membrane				ovary(1)|liver(1)	2						TTTTGCTTTTCTTTTTCTCCT	0.269													13	63					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81654595	81654595	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81654595G>A	uc002bgo.1	-	4	360	c.360C>T	c.(358-360)TTC>TTT	p.F120F	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Silent_p.F120F	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	120	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						CCCAGGGAATGAAGATGACCA	0.483													12	19					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81654598	81654598	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81654598G>A	uc002bgo.1	-	4	357	c.357C>T	c.(355-357)ATC>ATT	p.I119I	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Silent_p.I119I	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	119	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						AGGGAATGAAGATGACCACAA	0.483													14	18					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81664975	81664975	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81664975G>A	uc002bgo.1	-	2	193	c.193C>T	c.(193-195)CGC>TGC	p.R65C	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.R65C	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	65	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						GGTCTGCAGCGAATGTTTGCC	0.463													35	135					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81666408	81666408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:81666408G>A	uc002bgo.1	-	1	11	c.11C>T	c.(10-12)TCG>TTG	p.S4L	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.S4L	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	4	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						GGATGCCTTCGAGGTTTTCAT	0.537													7	32					0	0	1	0	0
EFTUD1	79631	broad.mit.edu	37	15	82444475	82444475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:82444475G>A	uc002bgt.1	-	18	2489	c.2320C>T	c.(2320-2322)CGT>TGT	p.R774C	EFTUD1_uc002bgs.1_Missense_Mutation_p.R145C|EFTUD1_uc002bgu.1_Missense_Mutation_p.R723C	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	774					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						TCCATAGAACGAATCAAATCA	0.418													25	91					0	0	1	0	0
EFTUD1	79631	broad.mit.edu	37	15	82507161	82507161	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:82507161G>A	uc002bgt.1	-	15	1816	c.1647C>T	c.(1645-1647)CTC>CTT	p.L549L	EFTUD1_uc002bgu.1_Silent_p.L498L	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	549					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						GGACTTGGGGGAGGCCATCTG	0.473													23	60					0	0	1	0	0
FAM154B	283726	broad.mit.edu	37	15	82574877	82574877	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:82574877C>T	uc002bgv.2	+	3	740	c.671C>T	c.(670-672)CCA>CTA	p.P224L	FAM154B_uc010unr.1_Missense_Mutation_p.P209L|FAM154B_uc010uns.1_RNA	NM_001008226	NP_001008227	Q658L1	F154B_HUMAN	hypothetical protein LOC283726	224										skin(2)	2						AGTTTTCAACCATGGGAAATC	0.463													26	99					0	0	1	0	0
CPEB1	64506	broad.mit.edu	37	15	83218214	83218215	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83218214_83218215GG>AA	uc002bit.2	-	9	1726_1727	c.1589_1590CC>TT	c.(1588-1590)CCC>CTT	p.P530L	CPEB1_uc002biq.2_Missense_Mutation_p.P390L|CPEB1_uc002bir.2_Missense_Mutation_p.P395L|CPEB1_uc002bis.2_Missense_Mutation_p.P390L|CPEB1_uc010uod.1_Missense_Mutation_p.P239L|CPEB1_uc010uoe.1_Missense_Mutation_p.P468L|CPEB1_uc002biu.2_Missense_Mutation_p.P492L|CPEB1_uc010uof.1_Missense_Mutation_p.P390L|CPEB1_uc002biv.2_Missense_Mutation_p.P465L|CPEB1_uc002bip.2_Missense_Mutation_p.P239L	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	470	RRM 2.|Necessary for stress granule assembly and correct localization in dcp1 bodies.				mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			ACTTACCAATGGGATACTTGTG	0.52													17	55					0	0	1	0	0
CPEB1	64506	broad.mit.edu	37	15	83221249	83221249	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83221249C>T	uc002bit.2	-	8	1513	c.1376G>A	c.(1375-1377)CGA>CAA	p.R459Q	CPEB1_uc002biq.2_Missense_Mutation_p.R319Q|CPEB1_uc002bir.2_Missense_Mutation_p.R324Q|CPEB1_uc002bis.2_Missense_Mutation_p.R319Q|CPEB1_uc010uod.1_Missense_Mutation_p.R168Q|CPEB1_uc010uoe.1_Missense_Mutation_p.R397Q|CPEB1_uc002biu.2_Missense_Mutation_p.R421Q|CPEB1_uc010uof.1_Missense_Mutation_p.R319Q|CPEB1_uc002biv.2_Missense_Mutation_p.R394Q|CPEB1_uc002bip.2_Missense_Mutation_p.R168Q	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	399	RRM 1.|Necessary for stress granule assembly and correct localization in dcp1 bodies.				mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			GCGCATCCTTCGGCTGGACAT	0.502													7	77					0	0	1	0	0
CPEB1	64506	broad.mit.edu	37	15	83224840	83224840	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83224840G>A	uc002bit.2	-	5	956	c.819C>T	c.(817-819)TTC>TTT	p.F273F	CPEB1_uc002biq.2_Silent_p.F138F|CPEB1_uc002bir.2_Silent_p.F138F|CPEB1_uc002bis.2_Silent_p.F138F|CPEB1_uc010uod.1_5'UTR|CPEB1_uc010uoe.1_Silent_p.F216F|CPEB1_uc002biu.2_Silent_p.F240F|CPEB1_uc010uof.1_Silent_p.F138F|CPEB1_uc002biv.2_Silent_p.F213F|CPEB1_uc002bip.2_5'UTR	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	213	Ser-rich.				mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			ACAGAGACAGGAAGGGCAGAG	0.493													6	32					0	0	1	0	0
AP3B2	8120	broad.mit.edu	37	15	83331569	83331569	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83331569C>T	uc010uoh.1	-	22	2830	c.2653G>A	c.(2653-2655)GAT>AAT	p.D885N	AP3B2_uc010uoi.1_Missense_Mutation_p.D904N|AP3B2_uc010uoj.1_Missense_Mutation_p.D853N|AP3B2_uc010bmp.2_5'Flank|AP3B2_uc010uog.1_Missense_Mutation_p.D521N	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	885					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			ATGTGGGGATCCCCGGAGAAA	0.622													21	15					0	0	1	0	0
AP3B2	8120	broad.mit.edu	37	15	83348509	83348509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83348509G>A	uc010uoh.1	-	10	1331	c.1154C>T	c.(1153-1155)ACC>ATC	p.T385I	AP3B2_uc010uoi.1_Missense_Mutation_p.T385I|AP3B2_uc010uoj.1_Missense_Mutation_p.T353I|AP3B2_uc010uog.1_Missense_Mutation_p.T21I	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	385					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			GGTGGGGTCGGTGGACCTGAT	0.577													29	48					0	0	1	0	0
AP3B2	8120	broad.mit.edu	37	15	83350314	83350314	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83350314G>A	uc010uoh.1	-	5	556	c.379C>T	c.(379-381)CGT>TGT	p.R127C	AP3B2_uc010uoi.1_Missense_Mutation_p.R127C|AP3B2_uc010uoj.1_Missense_Mutation_p.R95C|AP3B2_uc010uog.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	127					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			GCACTGGCACGAATCAGCTGG	0.572													20	66					0	0	1	0	0
FSD2	123722	broad.mit.edu	37	15	83437738	83437738	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83437738C>T	uc002bjd.2	-	9	1614	c.1447G>A	c.(1447-1449)GAA>AAA	p.E483K	FSD2_uc010uol.1_Missense_Mutation_p.E438K|FSD2_uc010uom.1_Missense_Mutation_p.E438K	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	483	Fibronectin type-III 2.									central_nervous_system(1)	1						ACAGCCTCTTCACAGCTCCTT	0.493													6	25					0	0	1	0	0
FSD2	123722	broad.mit.edu	37	15	83456104	83456104	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83456104C>T	uc002bjd.2	-	2	206	c.39G>A	c.(37-39)AGG>AGA	p.R13R	FSD2_uc010uol.1_Silent_p.R13R|FSD2_uc010uom.1_Silent_p.R13R	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	13										central_nervous_system(1)	1						TGGGAGTAGACCTGTCCAGCC	0.468													65	64					0	0	1	0	0
FSD2	123722	broad.mit.edu	37	15	83456109	83456109	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83456109C>T	uc002bjd.2	-	2	201	c.34G>A	c.(34-36)GAC>AAC	p.D12N	FSD2_uc010uol.1_Missense_Mutation_p.D12N|FSD2_uc010uom.1_Missense_Mutation_p.D12N	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	12										central_nervous_system(1)	1						GTAGACCTGTCCAGCCCCAGT	0.468													64	63					0	0	1	0	0
WHAMM	123720	broad.mit.edu	37	15	83499448	83499448	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83499448C>T	uc002bje.2	+	9	2245	c.1739C>T	c.(1738-1740)TCC>TTC	p.S580F		NM_001080435	NP_001073904	Q8TF30	WHAMM_HUMAN	WAS protein homolog associated with actin, golgi	580						cytoplasmic vesicle membrane|ER-Golgi intermediate compartment|Golgi apparatus	actin binding				0						TTGCCAGCTTCCCACGCGGTG	0.512													16	197					0	0	1	0	0
WHAMM	123720	broad.mit.edu	37	15	83499498	83499498	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83499498C>T	uc002bje.2	+	9	2295	c.1789C>T	c.(1789-1791)CCC>TCC	p.P597S		NM_001080435	NP_001073904	Q8TF30	WHAMM_HUMAN	WAS protein homolog associated with actin, golgi	597						cytoplasmic vesicle membrane|ER-Golgi intermediate compartment|Golgi apparatus	actin binding				0						TAGAGGTGTTCCCCTATCGGA	0.488													26	75					0	0	1	0	0
TM6SF1	53346	broad.mit.edu	37	15	83781639	83781639	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83781639C>T	uc002bjp.2	+	2	292	c.183C>T	c.(181-183)GAC>GAT	p.D61D	TM6SF1_uc010bmq.2_Silent_p.D61D|TM6SF1_uc002bjq.2_Silent_p.D61D|TM6SF1_uc010bmr.2_RNA	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	61						integral to membrane				ovary(1)	1						CACCCCGGGACCCACTGTTCT	0.478													23	143					0	0	1	0	0
TM6SF1	53346	broad.mit.edu	37	15	83784673	83784673	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83784673C>T	uc002bjp.2	+	3	382	c.273C>T	c.(271-273)TTC>TTT	p.F91F	TM6SF1_uc010bmq.2_Silent_p.F91F|TM6SF1_uc002bjq.2_Silent_p.F91F|TM6SF1_uc010bmr.2_RNA	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	91						integral to membrane				ovary(1)	1						TTGACGGGTTCATGACACACT	0.433													22	67					0	0	1	0	0
TM6SF1	53346	broad.mit.edu	37	15	83793490	83793490	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83793490C>T	uc002bjp.2	+	7	779	c.670C>T	c.(670-672)CTC>TTC	p.L224F	TM6SF1_uc010bmq.2_Missense_Mutation_p.L224F|TM6SF1_uc002bjq.2_Intron|TM6SF1_uc010bmr.2_Intron|TM6SF1_uc002bjr.2_Missense_Mutation_p.L76F	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	224	Helical; (Potential).					integral to membrane				ovary(1)	1						GGTTGTGTGTCTCCTCCTGGC	0.398													33	221					0	0	1	0	0
HDGFRP3	50810	broad.mit.edu	37	15	83808025	83808025	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83808025G>A	uc002bjs.1	-	6	764	c.609C>T	c.(607-609)ACC>ACT	p.T203T		NM_016073	NP_057157	Q9Y3E1	HDGR3_HUMAN	hepatoma-derived growth factor, related protein	203					cell proliferation	nucleus	growth factor activity				0						ATGGTAGTTAGGTCTGTAAAA	0.313													11	104					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83931724	83931724	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83931724G>A	uc002bjt.1	-	4	2367	c.2279C>T	c.(2278-2280)CCC>CTC	p.P760L	BNC1_uc010uos.1_Missense_Mutation_p.P748L	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	760	C2H2-type 4.				epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CCTGCGGGAGGGAAAGGTAGC	0.328													20	33					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83932157	83932157	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83932157C>G	uc002bjt.1	-	4	1934	c.1846G>C	c.(1846-1848)GAG>CAG	p.E616Q	BNC1_uc010uos.1_Missense_Mutation_p.E604Q	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	616					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CCACTGGACTCAATTACTGAT	0.542													7	122					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83932393	83932393	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83932393G>A	uc002bjt.1	-	4	1698	c.1610C>T	c.(1609-1611)TCC>TTC	p.S537F	BNC1_uc010uos.1_Missense_Mutation_p.S525F	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	537	Nuclear localization signal.			S->A: No effect on phosphorylation. Abolishes phosphorylation and induces nuclear restriction; when associated with A-541.|S->D: Reduces phosphorylation and induces partial relocation into the cytoplasm.	epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GGACTTCCTGGATTTCTTCTT	0.463													14	145					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83932427	83932427	+	Missense_Mutation	SNP	C	T	T	rs149687703		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83932427C>T	uc002bjt.1	-	4	1664	c.1576G>A	c.(1576-1578)GAA>AAA	p.E526K	BNC1_uc010uos.1_Missense_Mutation_p.E514K	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	526					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AATGGCATTTCGTTTGAAATG	0.488													35	124					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83932503	83932503	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83932503C>T	uc002bjt.1	-	4	1588	c.1500G>A	c.(1498-1500)GAG>GAA	p.E500E	BNC1_uc010uos.1_Silent_p.E488E	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	500					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TGTTTGCTACCTCGGCAGGCG	0.527													33	62					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83933329	83933329	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83933329C>T	uc002bjt.1	-	4	762	c.674G>A	c.(673-675)GGA>GAA	p.G225E	BNC1_uc010uos.1_Missense_Mutation_p.G213E	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	225					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GCTGGGGTTTCCTTTGTCCAC	0.498													51	153					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83935804	83935804	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:83935804G>A	uc002bjt.1	-	3	307	c.219C>T	c.(217-219)ATC>ATT	p.I73I	BNC1_uc010uos.1_Silent_p.I61I	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	73					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						ACATGGGGGGGATCCTTAGCT	0.423													13	43					0	0	1	0	0
SH3GL3	6457	broad.mit.edu	37	15	84237342	84237342	+	Silent	SNP	C	T	T	rs146975595		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84237342C>T	uc002bjw.2	+	4	444	c.249C>T	c.(247-249)ACC>ACT	p.T83T	SH3GL3_uc010uot.1_Silent_p.T83T|SH3GL3_uc002bjx.2_Silent_p.T14T|SH3GL3_uc002bju.2_Silent_p.T91T|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	83	Required for dimerization upon membrane association (By similarity).|BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						AGGTGAAGACCACAGGATACC	0.468													28	125					0	0	1	0	0
SH3GL3	6457	broad.mit.edu	37	15	84257443	84257443	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84257443G>A	uc002bjw.2	+	8	953	c.758G>A	c.(757-759)CGA>CAA	p.R253Q	SH3GL3_uc010uot.1_Missense_Mutation_p.R253Q|SH3GL3_uc002bjx.2_Missense_Mutation_p.R184Q|SH3GL3_uc002bju.2_Missense_Mutation_p.R261Q|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	253	Interaction with ARC (By similarity).				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						GTCCCCAGACGAGAATACAAG	0.458													14	79					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84488747	84488747	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84488747G>A	uc002bjz.3	+	6	772	c.548G>A	c.(547-549)GGA>GAA	p.G183E	ADAMTSL3_uc002bjy.1_Missense_Mutation_p.G183E|ADAMTSL3_uc010bmt.1_Missense_Mutation_p.G183E|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.G183E	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	183						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GTACTGGATGGAACTCGTTGC	0.532													18	69					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84527518	84527518	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84527518G>A	uc002bjz.3	+	8	952	c.728G>A	c.(727-729)AGA>AAA	p.R243K	ADAMTSL3_uc002bjy.1_Missense_Mutation_p.R243K|ADAMTSL3_uc010bmt.1_Missense_Mutation_p.R243K|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.R243K	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	243						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TCTTTCCCAGGAGAAGAAAAT	0.398													21	117					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84553916	84553916	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84553916C>T	uc002bjz.3	+	10	1248	c.1024C>T	c.(1024-1026)CAG>TAG	p.Q342*	ADAMTSL3_uc010bmt.1_Nonsense_Mutation_p.Q342*|ADAMTSL3_uc010bmu.1_Nonsense_Mutation_p.Q342*	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	342						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			CATCAGTCATCAGTGGAGACA	0.468													12	48					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84582010	84582010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84582010G>A	uc002bjz.3	+	16	2091	c.1867G>A	c.(1867-1869)GAA>AAA	p.E623K	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.E623K|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.E623K	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	623	TSP type-1 4.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			CTGCCTCCTGGAAGCATGTGA	0.612													18	50					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84592779	84592779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84592779C>T	uc002bjz.3	+	17	2335	c.2111C>T	c.(2110-2112)CCC>CTC	p.P704L	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.P704L|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.P704L	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	704	TSP type-1 5.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GAGCCCTGTCCCCCCAGGTAT	0.542													9	43					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651583	84651583	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84651583G>A	uc002bjz.3	+	21	3427	c.3203G>A	c.(3202-3204)GGA>GAA	p.G1068E	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.G1068E|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.G1068E	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1068						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			AATTCTGCAGGAAGCACCAAC	0.428													27	101					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651838	84651838	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84651838G>T	uc002bjz.3	+	21	3682	c.3458G>T	c.(3457-3459)GGG>GTG	p.G1153V	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.G1153V|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.G1153V	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1153						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			CAGCTCAGAGGGGAAACAGGG	0.547													14	48					4.93089e-13	4.95205e-13	1	1	0
ADAMTSL3	57188	broad.mit.edu	37	15	84683354	84683354	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84683354C>T	uc002bjz.3	+	24	4258	c.4034C>T	c.(4033-4035)TCC>TTC	p.S1345F	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.S1345F|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.S1345F	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1345	Ig-like C2-type 3.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GGCAATGTTTCCTTGCTTTTC	0.428													53	176					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84690161	84690161	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84690161G>A	uc002bjz.3	+	26	4498	c.4274_splice	c.e26-1	p.E1425_splice	ADAMTSL3_uc010bmt.1_Splice_Site_p.E1425_splice|ADAMTSL3_uc010bmu.1_Splice_Site_p.E1425_splice	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor							proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TCTTTCTGCAGAGCCTTTTTG	0.488													13	206					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84700164	84700164	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84700164C>T	uc002bjz.3	+	28	4958	c.4734C>T	c.(4732-4734)TCC>TCT	p.S1578S	ADAMTSL3_uc010bmu.1_Silent_p.S1578S	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1578						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCTCTGACTCCAACTGTGATG	0.512													54	220					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	84908046	84908046	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:84908046C>T	uc010bmx.1	+	1		c.1377C>T			uc010bmy.1_5'Flank					Homo sapiens cDNA FLJ40881 fis, clone UTERU2000074, moderately similar to Human fusion protein (RARA/myl) mRNA.																		CTCCAGGGCCCTTTTCCCCCT	0.498													6	38					0	0	1	0	0
ZNF592	9640	broad.mit.edu	37	15	85327597	85327598	+	Missense_Mutation	DNP	CC	TT	TT	rs148220929		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85327597_85327598CC>TT	uc002bld.2	+	4	2027_2028	c.1691_1692CC>TT	c.(1690-1692)CCC>CTT	p.P564L	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	564					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGCTCCAACCCCGTGCCCCTCT	0.594													52	186					0	0	1	0	0
ZNF592	9640	broad.mit.edu	37	15	85327800	85327800	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85327800C>T	uc002bld.2	+	4	2230	c.1894C>T	c.(1894-1896)CTG>TTG	p.L632L	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	632	C2H2-type 2; atypical.				cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CAAGTGCAGCCTGCTCCGGCA	0.592													33	78					0	0	1	0	0
ZNF592	9640	broad.mit.edu	37	15	85327814	85327814	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85327814C>T	uc002bld.2	+	4	2244	c.1908C>T	c.(1906-1908)GCC>GCT	p.A636A	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	636	C2H2-type 2; atypical.				cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCCGGCACGCCCGTGACCACA	0.597													20	84					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85382937	85382937	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85382937C>T	uc002ble.2	+	5	1200	c.1033C>T	c.(1033-1035)CGA>TGA	p.R345*		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	345	Ig-like 1.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CTCTAGGTGTCGAGAAGAAGA	0.632													25	93					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85399759	85399759	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85399759G>A	uc002ble.2	+	6	2563	c.2396G>A	c.(2395-2397)AGA>AAA	p.R799K		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	799					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GAGGATGGGAGAACATCTGCT	0.517													47	76					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85399823	85399823	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85399823G>A	uc002ble.2	+	6	2627	c.2460G>A	c.(2458-2460)GTG>GTA	p.V820V		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	820					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGATACAAGTGGATGGAAGGA	0.522													16	78					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85400298	85400298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85400298G>A	uc002ble.2	+	6	3102	c.2935G>A	c.(2935-2937)GAG>AAG	p.E979K		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	979					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CAGATCTGAGGAGGCAGTAGT	0.542													56	171					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85400660	85400661	+	Silent	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85400660_85400661CC>TT	uc002ble.2	+	6	3464_3465	c.3297_3298CC>TT	c.(3295-3300)TTCCTG>TTTTTG	p.1099_1100FL>FL		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1099_1100					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CAGCCACCTTCCTGCCCTCTGA	0.624													22	76					0	0	1	0	0
SLC28A1	9154	broad.mit.edu	37	15	85438259	85438259	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85438259C>T	uc002blg.2	+	6	568	c.366C>T	c.(364-366)TTC>TTT	p.F122F	SLC28A1_uc010upd.1_Silent_p.F44F|SLC28A1_uc010bnb.2_Silent_p.F122F|SLC28A1_uc010upe.1_Silent_p.F122F|SLC28A1_uc010upf.1_Silent_p.F122F|SLC28A1_uc010upg.1_Silent_p.F122F|SLC28A1_uc002blf.2_Silent_p.F122F	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	122	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCCTCACCTTCCTGGGCCACC	0.622													10	167					0	0	1	0	0
SLC28A1	9154	broad.mit.edu	37	15	85447412	85447412	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85447412C>T	uc002blg.2	+	7	748	c.546C>T	c.(544-546)TTC>TTT	p.F182F	SLC28A1_uc010upd.1_Silent_p.F104F|SLC28A1_uc010bnb.2_Silent_p.F182F|SLC28A1_uc010upe.1_Silent_p.F182F|SLC28A1_uc010upf.1_Silent_p.F182F|SLC28A1_uc010upg.1_Silent_p.F182F	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	182	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TGGTGTCCTTCGCAGGAATCT	0.592													40	109					0	0	1	0	0
SLC28A1	9154	broad.mit.edu	37	15	85478726	85478726	+	Missense_Mutation	SNP	G	A	A	rs147369428	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85478726G>A	uc002blg.2	+	15	1760	c.1558G>A	c.(1558-1560)GGC>AGC	p.G520S	SLC28A1_uc010bnb.2_Missense_Mutation_p.G520S|SLC28A1_uc010upe.1_Intron|SLC28A1_uc010upf.1_Missense_Mutation_p.G520S|SLC28A1_uc010upg.1_Missense_Mutation_p.G520S	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	520					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GGAGTGGGTCGGCGACAGGAA	0.622													24	212					0	0	1	0	0
SLC28A1	9154	broad.mit.edu	37	15	85486685	85486685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:85486685G>A	uc002blg.2	+	16	1793	c.1591G>A	c.(1591-1593)GAA>AAA	p.E531K	SLC28A1_uc010bnb.2_Missense_Mutation_p.E531K|SLC28A1_uc010upe.1_Missense_Mutation_p.E365K|SLC28A1_uc010upf.1_Missense_Mutation_p.E531K|SLC28A1_uc010upg.1_Intron	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	531					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GGTCAGAGCTGAAGTCCTCAC	0.537													16	68					0	0	1	0	0
AKAP13	11214	broad.mit.edu	37	15	86124487	86124487	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86124487C>T	uc002blv.1	+	7	3358	c.3188C>T	c.(3187-3189)TCT>TTT	p.S1063F	AKAP13_uc002blt.1_Missense_Mutation_p.S1063F|AKAP13_uc002blu.1_Missense_Mutation_p.S1063F|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1063					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						AGTCAGCCTTCTCCTCTGGAT	0.532													18	113					0	0	1	0	0
AKAP13	11214	broad.mit.edu	37	15	86124798	86124798	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86124798C>T	uc002blv.1	+	7	3669	c.3499C>T	c.(3499-3501)CAC>TAC	p.H1167Y	AKAP13_uc002blt.1_Missense_Mutation_p.H1167Y|AKAP13_uc002blu.1_Missense_Mutation_p.H1167Y|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1167					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GGGAGCAGACCACAGCTGTAC	0.547													46	55					0	0	1	0	0
AKAP13	11214	broad.mit.edu	37	15	86124923	86124923	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86124923C>T	uc002blv.1	+	7	3794	c.3624C>T	c.(3622-3624)GCC>GCT	p.A1208A	AKAP13_uc002blt.1_Silent_p.A1208A|AKAP13_uc002blu.1_Silent_p.A1208A|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1208					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						ATGATGGGGCCCCAGCTGGTG	0.597													15	63					0	0	1	0	0
AKAP13	11214	broad.mit.edu	37	15	86270675	86270675	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86270675C>T	uc002blv.1	+	29	7238	c.7068C>T	c.(7066-7068)ACC>ACT	p.T2356T	AKAP13_uc002blu.1_Silent_p.T2360T|AKAP13_uc010bnf.1_Silent_p.T977T|AKAP13_uc002blw.1_Silent_p.T821T|AKAP13_uc002blx.1_Silent_p.T601T	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2356	Interaction with ESR1.|Potential.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TGTTGGACACCAGAGCCCGAG	0.438													21	93					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	86697680	86697680	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86697680G>A	uc002blz.1	+	3	224	c.144G>A	c.(142-144)AAG>AAA	p.K48K		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	48					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TTGGACGGAAGGCCCTAGAAT	0.448													10	18					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	86697752	86697752	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86697752C>T	uc002blz.1	+	3	296	c.216C>T	c.(214-216)CTC>CTT	p.L72L		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	72					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						GCCAGAATCTCCTCCACTGTC	0.507													20	22					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	86702171	86702171	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86702171G>A	uc002blz.1	+	4	344	c.264G>A	c.(262-264)ATG>ATA	p.M88I		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	88					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TAGTCTCCATGGGAGCCATGC	0.443													31	111					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	86790910	86790910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86790910G>A	uc002blz.1	+	6	477	c.397G>A	c.(397-399)GGC>AGC	p.G133S		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	133					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						AGAGTCGAACGGCCGCAGAGC	0.507													3	16					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	86808051	86808051	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86808051G>A	uc002blz.1	+	10	1591	c.1511G>A	c.(1510-1512)CGA>CAA	p.R504Q	AGBL1_uc002bma.1_Missense_Mutation_p.R235Q|AGBL1_uc002bmb.1_Missense_Mutation_p.R198Q	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	504					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						ATGTTGGAACGAAAATGTGGA	0.443													35	56					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	86813153	86813153	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86813153C>T	uc002blz.1	+	13	1784	c.1704C>T	c.(1702-1704)TTC>TTT	p.F568F	AGBL1_uc002bma.1_Silent_p.F299F|AGBL1_uc002bmb.1_Silent_p.F262F	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	568					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TCTGCAGGTTCGAGTATGACT	0.473													10	36					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	86814879	86814879	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86814879G>A	uc002blz.1	+	14	1959	c.1879G>A	c.(1879-1881)GAG>AAG	p.E627K	AGBL1_uc002bma.1_Missense_Mutation_p.E358K|AGBL1_uc002bmb.1_Missense_Mutation_p.E321K	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	627					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TTCTGTGAAGGAGGCTCTTCT	0.383													22	126					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	86940712	86940712	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:86940712C>T	uc002blz.1	+	17	2432	c.2352C>T	c.(2350-2352)CTC>CTT	p.L784L		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	784					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TGGCTAGGCTCTTGAGGGAAA	0.517													32	138					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88420241	88420241	+	Silent	SNP	C	T	T	rs67229046		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88420241C>T	uc002bme.1	-	19	2607	c.2445G>A	c.(2443-2445)TTG>TTA	p.L815L	NTRK3_uc002bmh.2_Silent_p.L793L|NTRK3_uc002bmf.1_Silent_p.L801L	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	815	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CCTTGATGTTCAACCGCTGCT	0.542			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			19	85					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88423632	88423632	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88423632G>A	uc002bme.1	-	18	2365	c.2203C>T	c.(2203-2205)CGC>TGC	p.R735C	NTRK3_uc002bmh.2_Missense_Mutation_p.R713C|NTRK3_uc002bmf.1_Missense_Mutation_p.R721C	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	735	Cytoplasmic (Potential).|Protein kinase.		R -> F (in a lung large cell carcinoma sample; somatic mutation; requires 2 nucleotide substitutions).		transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity	p.R721F(1)	ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GGCATCCAGCGAATGGGGAGC	0.507			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			32	47					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88472476	88472476	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88472476C>T	uc002bme.1	-	16	2241	c.2079G>A	c.(2077-2079)GTG>GTA	p.V693V	NTRK3_uc002bmh.2_Silent_p.V685V|NTRK3_uc002bmf.1_Silent_p.V693V|NTRK3_uc010upl.1_Silent_p.V595V|NTRK3_uc010bnh.1_Silent_p.V685V	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	693	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CCCCAATCTTCACTAGCAGAT	0.562			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			12	160					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88476368	88476368	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88476368C>T	uc002bme.1	-	15	1926	c.1764G>A	c.(1762-1764)GAG>GAA	p.E588E	NTRK3_uc002bmh.2_Silent_p.E580E|NTRK3_uc002bmf.1_Silent_p.E588E|NTRK3_uc010upl.1_Silent_p.E490E|NTRK3_uc010bnh.1_Silent_p.E580E	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	588	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCAGCTCGGCCTCCCTCTGGA	0.562			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			11	84					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88476372	88476372	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88476372C>T	uc002bme.1	-	15	1922	c.1760G>A	c.(1759-1761)AGG>AAG	p.R587K	NTRK3_uc002bmh.2_Missense_Mutation_p.R579K|NTRK3_uc002bmf.1_Missense_Mutation_p.R587K|NTRK3_uc010upl.1_Missense_Mutation_p.R489K|NTRK3_uc010bnh.1_Missense_Mutation_p.R579K	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	587	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CTCGGCCTCCCTCTGGAAATC	0.552			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			6	90					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88476386	88476386	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88476386C>T	uc002bme.1	-	15	1908	c.1746G>A	c.(1744-1746)CGG>CGA	p.R582R	NTRK3_uc002bmh.2_Silent_p.R574R|NTRK3_uc002bmf.1_Silent_p.R582R|NTRK3_uc010upl.1_Silent_p.R484R|NTRK3_uc010bnh.1_Silent_p.R574R	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	582	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GGAAATCCTTCCGGGCAGCCA	0.567			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			51	49					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88669548	88669548	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88669548G>A	uc002bme.1	-	12	1512	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	NTRK3_uc002bmh.2_Silent_p.F442F|NTRK3_uc002bmf.1_Silent_p.F450F|NTRK3_uc010upl.1_Silent_p.F352F|NTRK3_uc010bnh.1_Silent_p.F442F|NTRK3_uc002bmg.2_Silent_p.F450F	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	450	Helical; (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGATCATGACGAAGAGAACCA	0.453			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			22	58					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88678498	88678498	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88678498C>T	uc002bme.1	-	9	1200	c.1038G>A	c.(1036-1038)AAG>AAA	p.K346K	NTRK3_uc002bmh.2_Silent_p.K346K|NTRK3_uc002bmf.1_Silent_p.K346K|NTRK3_uc010upl.1_Silent_p.K248K|NTRK3_uc010bnh.1_Silent_p.K346K|NTRK3_uc002bmg.2_Silent_p.K346K	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	346	Ig-like C2-type 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CATGGATGATCTTGGACTCCC	0.567			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			10	140					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88678521	88678521	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88678521C>T	uc002bme.1	-	9	1177	c.1015G>A	c.(1015-1017)GGG>AGG	p.G339R	NTRK3_uc002bmh.2_Missense_Mutation_p.G339R|NTRK3_uc002bmf.1_Missense_Mutation_p.G339R|NTRK3_uc010upl.1_Missense_Mutation_p.G241R|NTRK3_uc010bnh.1_Missense_Mutation_p.G339R|NTRK3_uc002bmg.2_Missense_Mutation_p.G339R	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	339	Ig-like C2-type 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			AGAGGCTGCCCATTGTGCAGC	0.592			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			16	107					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88690576	88690576	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:88690576G>A	uc002bme.1	-	5	616	c.454C>T	c.(454-456)CTT>TTT	p.L152F	NTRK3_uc002bmh.2_Missense_Mutation_p.L152F|NTRK3_uc002bmf.1_Missense_Mutation_p.L152F|NTRK3_uc010upl.1_Missense_Mutation_p.L54F|NTRK3_uc010bnh.1_Missense_Mutation_p.L152F|NTRK3_uc002bmg.2_Missense_Mutation_p.L152F	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	152	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity	p.L152I(1)	ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			AATTCCCGAAGACTCAGCGTC	0.478			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			19	61					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89381953	89381953	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89381953G>A	uc010upo.1	+	3	504	c.130G>A	c.(130-132)GGG>AGG	p.G44R	ACAN_uc002bmx.2_Missense_Mutation_p.G44R|ACAN_uc010upp.1_Missense_Mutation_p.G44R|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	44					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGTCCTCCTGGGGACCTCCCT	0.617													83	81					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89381960	89381960	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89381960C>T	uc010upo.1	+	3	511	c.137C>T	c.(136-138)TCC>TTC	p.S46F	ACAN_uc002bmx.2_Missense_Mutation_p.S46F|ACAN_uc010upp.1_Missense_Mutation_p.S46F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	46					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CTGGGGACCTCCCTCACCATC	0.622													37	118					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89385059	89385059	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89385059G>A	uc010upo.1	+	5	1092	c.718G>A	c.(718-720)GAG>AAG	p.E240K	ACAN_uc002bmx.2_Missense_Mutation_p.E240K|ACAN_uc010upp.1_Missense_Mutation_p.E240K|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	240					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AGACACCAACGAGACCTATGA	0.607													31	109					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89388756	89388756	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89388756C>T	uc010upo.1	+	7	1446	c.1072C>T	c.(1072-1074)CCA>TCA	p.P358S	ACAN_uc002bmx.2_Missense_Mutation_p.P358S|ACAN_uc010upp.1_Missense_Mutation_p.P358S|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	358					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TGTGGACATCCCAGAAAACTT	0.577													29	44					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89388907	89388907	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89388907C>T	uc010upo.1	+	7	1597	c.1223C>T	c.(1222-1224)TCC>TTC	p.S408F	ACAN_uc002bmx.2_Missense_Mutation_p.S408F|ACAN_uc010upp.1_Missense_Mutation_p.S408F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	408					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TTCGAGGTCTCCCCCAGTCCC	0.602													16	60					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89391179	89391179	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89391179G>A	uc010upo.1	+	9	2016	c.1642G>A	c.(1642-1644)GAC>AAC	p.D548N	ACAN_uc002bmx.2_Missense_Mutation_p.D548N|ACAN_uc010upp.1_Missense_Mutation_p.D548N|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	548					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			ATGCGTGGGTGACAAGGACAG	0.587													35	110					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89392839	89392839	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89392839C>T	uc010upo.1	+	10	2277	c.1903C>T	c.(1903-1905)CCC>TCC	p.P635S	ACAN_uc002bmx.2_Missense_Mutation_p.P635S|ACAN_uc010upp.1_Missense_Mutation_p.P635S|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	635					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CCTCCGCTACCCCATCGTCAC	0.687													6	21					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89398297	89398297	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89398297G>A	uc010upo.1	+	12	2855	c.2481G>A	c.(2479-2481)AAG>AAA	p.K827K	ACAN_uc010upp.1_Silent_p.K827K|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	827					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TCCCCTCCAAGGAGCCATCCC	0.622													6	16					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89398393	89398393	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89398393G>A	uc010upo.1	+	12	2951	c.2577G>A	c.(2575-2577)GAG>GAA	p.E859E	ACAN_uc010upp.1_Silent_p.E859E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	859					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GCTCTGGGGAGGAATCTGGGG	0.607													10	47					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89398577	89398577	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89398577G>A	uc010upo.1	+	12	3135	c.2761G>A	c.(2761-2763)GGG>AGG	p.G921R	ACAN_uc010upp.1_Missense_Mutation_p.G921R|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	921					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			ACTACCCTCAGGGGATGAAGA	0.587													29	33					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89398676	89398676	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89398676C>T	uc010upo.1	+	12	3234	c.2860C>T	c.(2860-2862)CTC>TTC	p.L954F	ACAN_uc010upp.1_Missense_Mutation_p.L954F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	954					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AGTTGGGGATCTCAGTGGACT	0.557													75	108					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89400019	89400019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89400019G>A	uc010upo.1	+	12	4577	c.4203G>A	c.(4201-4203)GAG>GAA	p.E1401E	ACAN_uc010upp.1_Silent_p.E1401E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1401					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AAGTTCTAGAGACTACTGCCC	0.542													104	165					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89400585	89400585	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89400585C>T	uc010upo.1	+	12	5143	c.4769C>T	c.(4768-4770)CCT>CTT	p.P1590L	ACAN_uc010upp.1_Missense_Mutation_p.P1590L|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1590					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AGTGGGTTGCCTTCTGGAAAA	0.532													15	154					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89400656	89400656	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89400656C>T	uc010upo.1	+	12	5214	c.4840C>T	c.(4840-4842)CTA>TTA	p.L1614L	ACAN_uc010upp.1_Silent_p.L1614L|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1614					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TTCTGGAACTCTAGGAAGTGG	0.547													45	177					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89401262	89401262	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89401262G>A	uc010upo.1	+	12	5820	c.5446G>A	c.(5446-5448)GTT>ATT	p.V1816I	ACAN_uc010upp.1_Missense_Mutation_p.V1816I|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1816					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CCCTGACCTGGTTTCTGGTAC	0.512													17	46					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89401599	89401599	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89401599C>T	uc010upo.1	+	12	6157	c.5783C>T	c.(5782-5784)CCA>CTA	p.P1928L	ACAN_uc010upp.1_Missense_Mutation_p.P1928L|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1928					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AGTGGAACTCCATCTAGTTTC	0.537													25	75					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89401879	89401879	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89401879C>T	uc010upo.1	+	12	6437	c.6063C>T	c.(6061-6063)GCC>GCT	p.A2021A	ACAN_uc010upp.1_Silent_p.A2021A|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2021					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CCTCTGTAGCCATGGGCACCA	0.502													30	41					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89402151	89402151	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89402151G>A	uc010upo.1	+	12	6709	c.6335G>A	c.(6334-6336)GGG>GAG	p.G2112E	ACAN_uc010upp.1_Missense_Mutation_p.G2112E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2112					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GCTGGGTTCGGGGCATCTGCC	0.552													21	80					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89402193	89402193	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89402193C>T	uc010upo.1	+	12	6751	c.6377C>T	c.(6376-6378)TCC>TTC	p.S2126F	ACAN_uc010upp.1_Missense_Mutation_p.S2126F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2126					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GATTCTGGGTCCCCTGATCTG	0.552													29	105					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89402247	89402247	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89402247C>T	uc010upo.1	+	12	6805	c.6431C>T	c.(6430-6432)TCC>TTC	p.S2144F	ACAN_uc010upp.1_Missense_Mutation_p.S2144F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2144					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CTTGAGAGATCCTCTGGCCTA	0.572													28	145					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89402436	89402436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89402436C>T	uc010upo.1	+	12	6994	c.6620C>T	c.(6619-6621)TCG>TTG	p.S2207L	ACAN_uc010upp.1_Missense_Mutation_p.S2207L|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2207					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGTCACACCTCGCAGCTGGGC	0.592													40	51					0	0	1	0	0
HAPLN3	145864	broad.mit.edu	37	15	89424951	89424951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89424951G>A	uc002bnc.2	-	3	258	c.130C>T	c.(130-132)CTT>TTT	p.L44F	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Missense_Mutation_p.L106F	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	44					cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					ACTCCATTAAGGAGGTCTTGG	0.622													26	74					0	0	1	0	0
HAPLN3	145864	broad.mit.edu	37	15	89430486	89430486	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89430486G>A	uc002bnc.2	-	2	172	c.44C>T	c.(43-45)TCC>TTC	p.S15F	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Missense_Mutation_p.S77F	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	15					cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					CAGTCCGTAGGAGCCGGGCAG	0.642													41	55					0	0	1	0	0
MFGE8	4240	broad.mit.edu	37	15	89442993	89442993	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89442993G>A	uc002bng.3	-	7	1033	c.920C>T	c.(919-921)GCC>GTC	p.A307V	MFGE8_uc002bnf.3_Missense_Mutation_p.A195V|MFGE8_uc002bnh.3_Intron|MFGE8_uc010bnn.2_Missense_Mutation_p.A299V|MFGE8_uc010upq.1_Missense_Mutation_p.A263V|MFGE8_uc010upr.1_Missense_Mutation_p.A307V	NM_005928	NP_005919	Q08431	MFGM_HUMAN	milk fat globule-EGF factor 8 protein isoform a	307	F5/8 type C 2.				angiogenesis|cell adhesion|interspecies interaction between organisms|single fertilization					ovary(1)	1	Lung NSC(78;0.0392)|all_lung(78;0.077)					AAAGTTACGGGCCCCCTGGGT	0.547													28	41					0	0	1	0	0
ABHD2	11057	broad.mit.edu	37	15	89738534	89738534	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:89738534C>T	uc002bnj.2	+	16	2075	c.1158C>T	c.(1156-1158)TTC>TTT	p.F386F	ABHD2_uc002bnk.2_Silent_p.F386F	NM_007011	NP_008942	P08910	ABHD2_HUMAN	alpha/beta hydrolase domain containing protein	386						integral to membrane	carboxylesterase activity			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					CTGTGCTGTTCCCCGAGCCCC	0.572													22	80					0	0	1	0	0
RHCG	51458	broad.mit.edu	37	15	90020813	90020813	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90020813G>A	uc002bnz.2	-	7	1071	c.1047C>T	c.(1045-1047)ATC>ATT	p.I349I	RHCG_uc002bny.2_Silent_p.I120I|RHCG_uc002boa.2_Intron	NM_016321	NP_057405	Q9UBD6	RHCG_HUMAN	Rh family, C glycoprotein	349	Helical; (Potential).				amine transport|cellular ion homeostasis|epithelial cell differentiation|transepithelial ammonium transport	apical plasma membrane|basolateral plasma membrane|cytoplasmic vesicle|integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			kidney(1)	1	Lung NSC(78;0.0237)|all_lung(78;0.0478)					TGCCGCCTATGATGCCAGGAA	0.582													6	73					0	0	1	0	0
C15orf42	90381	broad.mit.edu	37	15	90129102	90129103	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90129102_90129103CC>TT	uc002boe.2	+	4	1340_1341	c.1340_1341CC>TT	c.(1339-1341)TCC>TTT	p.S447F		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	447					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GACACAGCTTCCCTTTTCTCAG	0.48													84	72					0	0	1	0	0
C15orf42	90381	broad.mit.edu	37	15	90167845	90167845	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90167845C>T	uc002boe.2	+	20	4304	c.4304C>T	c.(4303-4305)CCT>CTT	p.P1435L	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1435					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CAGTCTCCTCCTGAAAGACGG	0.582													67	82					0	0	1	0	0
KIF7	374654	broad.mit.edu	37	15	90177088	90177088	+	Silent	SNP	C	T	T	rs141497185		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90177088C>T	uc002bof.2	-	12	2498	c.2421G>A	c.(2419-2421)ACG>ACA	p.T807T	KIF7_uc010upw.1_Silent_p.T293T	NM_198525	NP_940927	Q2M1P5	KIF7_HUMAN	kinesin family member 7	807	Potential.				microtubule-based movement|negative regulation of smoothened signaling pathway|positive regulation of smoothened signaling pathway	cilium	ATP binding|microtubule motor activity|protein binding			ovary(2)|lung(1)	3	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CCAGCCGCTCCGTAGCCTGCT	0.637													14	78					0	0	1	0	0
WDR93	56964	broad.mit.edu	37	15	90255328	90255328	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90255328C>T	uc002boj.2	+	5	734	c.633C>T	c.(631-633)CTC>CTT	p.L211L	WDR93_uc010bnr.2_Silent_p.L211L	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	211					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			CAGCCTTCCTCCTACAAGGCA	0.373													22	43					0	0	1	0	0
WDR93	56964	broad.mit.edu	37	15	90276307	90276307	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90276307C>T	uc002boj.2	+	13	1502	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F	WDR93_uc010bnr.2_Intron|WDR93_uc010upz.1_Silent_p.F184F	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	467					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			TAAAATATTTCTCGGTCCACA	0.483													15	207					0	0	1	0	0
WDR93	56964	broad.mit.edu	37	15	90286605	90286605	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90286605G>C	uc002boj.2	+	17	2145	c.2044G>C	c.(2044-2046)GAG>CAG	p.E682Q	WDR93_uc010bnr.2_Missense_Mutation_p.E654Q|WDR93_uc010upz.1_Missense_Mutation_p.E399Q	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	682					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			GCTCCAGAGAGAGAACTTCAA	0.577													15	81					0	0	1	0	0
MESP1	55897	broad.mit.edu	37	15	90293986	90293986	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90293986G>A	uc002bol.2	-	1	555	c.477C>T	c.(475-477)TCC>TCT	p.S159S		NM_018670	NP_061140	Q9BRJ9	MESP1_HUMAN	mesoderm posterior 1	159					cardiac atrium formation|cardiac cell fate determination|cardiac vascular smooth muscle cell differentiation|cardiac ventricle formation|cardioblast anterior-lateral migration|cardioblast migration to the midline involved in heart field formation|endothelial cell differentiation|gastrulation|growth involved in heart morphogenesis|heart looping|lateral mesoderm development|negative regulation of endodermal cell fate specification|negative regulation of mesodermal cell fate specification|negative regulation of transcription, DNA-dependent|neurogenesis|Notch signaling pathway|positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway|positive regulation of hepatocyte differentiation|positive regulation of Notch signaling pathway|positive regulation of striated muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|secondary heart field specification|sinoatrial node cell differentiation|sinus venosus morphogenesis		sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			AGCCCCGAGGGGACCCCGCGT	0.736													4	12					0	0	1	0	0
ANPEP	290	broad.mit.edu	37	15	90347765	90347765	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90347765G>C	uc002bop.3	-	5	1273	c.981C>G	c.(979-981)TTC>TTG	p.F327L		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	327	Extracellular.|Interaction with HCoV-229E.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	GACCAGCAAAGAAGTTAAGGA	0.597													10	140					0	0	1	0	0
ANPEP	290	broad.mit.edu	37	15	90349346	90349346	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90349346C>T	uc002bop.3	-	2	761	c.469G>A	c.(469-471)GAG>AAG	p.E157K		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	157	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	TCGGTGGGCTCCACCAGCTCA	0.617													22	103					0	0	1	0	0
SEMA4B	10509	broad.mit.edu	37	15	90768248	90768248	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90768248C>T	uc002boy.2	+	11	1526	c.1243C>T	c.(1243-1245)CTC>TTC	p.L415F	SEMA4B_uc002boz.2_Missense_Mutation_p.L415F|SEMA4B_uc010uqd.1_Missense_Mutation_p.L253F|SEMA4B_uc002bpa.2_Missense_Mutation_p.L253F|SEMA4B_uc010bnv.1_Missense_Mutation_p.L53F	NM_020210	NP_064595			semaphorin 4B precursor											ovary(1)|breast(1)|kidney(1)	3	Melanoma(11;0.00551)|Lung NSC(78;0.0125)|all_lung(78;0.0272)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.217)			ATCCCTGCAGCTCCCAGACCG	0.627													27	96					0	0	1	0	0
CIB1	10519	broad.mit.edu	37	15	90775465	90775465	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90775465G>A	uc002bpb.3	-	3	343	c.181C>T	c.(181-183)CTT>TTT	p.L61F	C15orf58_uc002bpc.2_5'Flank	NM_006384	NP_006375	Q99828	CIB1_HUMAN	calcium and integrin binding 1	61					apoptosis|cell adhesion|double-strand break repair	apical plasma membrane|endoplasmic reticulum|filopodium|nucleoplasm	calcium ion binding|protein binding				0	Melanoma(11;0.00551)|Lung NSC(78;0.0141)|all_lung(78;0.0303)		BRCA - Breast invasive adenocarcinoma(143;0.00269)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.217)			AGCTCTGGAAGGCTGAGAATC	0.597													29	122					0	0	1	0	0
C15orf58	390637	broad.mit.edu	37	15	90784905	90784905	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90784905C>T	uc002bpc.2	+	4	944	c.765C>T	c.(763-765)TTC>TTT	p.F255F		NM_001013657	NP_001013679	Q6ZNW5	VTC2_HUMAN	hypothetical protein LOC390637	255					glucose metabolic process	cytoplasm	GDP-D-glucose phosphorylase activity				0						CTCCTGGCTTCCTCTTTTACA	0.577													12	72					0	0	1	0	0
TTLL13	440307	broad.mit.edu	37	15	90793899	90793899	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90793899G>A	uc002bpd.1	+	2	325	c.37G>A	c.(37-39)GAA>AAA	p.E13K	TTLL13_uc002bpe.1_RNA	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13	13					protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			GGAATCAGAGGAAGACTATGT	0.473													32	48					0	0	1	0	0
TTLL13	440307	broad.mit.edu	37	15	90794047	90794047	+	Missense_Mutation	SNP	C	T	T	rs144811975		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90794047C>T	uc002bpd.1	+	2	473	c.185C>T	c.(184-186)CCG>CTG	p.P62L	TTLL13_uc002bpe.1_RNA	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13	62					protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			ACAAAAATTCCGAAGAAAGTC	0.478													103	139					0	0	1	0	0
TTLL13	440307	broad.mit.edu	37	15	90799405	90799405	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90799405G>A	uc002bpd.1	+	6	869	c.581G>A	c.(580-582)CGA>CAA	p.R194Q	TTLL13_uc002bpe.1_Intron	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13	194	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			GGTCGTCAGCGAAAAGCCCGC	0.557													29	135					0	0	1	0	0
NGRN	51335	broad.mit.edu	37	15	90814604	90814604	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90814604C>T	uc002bpf.1	+	3	510	c.460C>T	c.(460-462)CGG>TGG	p.R154W	TTLL13_uc002bpe.1_RNA|NGRN_uc002bpg.1_Missense_Mutation_p.R82W	NM_001033088	NP_001028260	Q9NPE2	NGRN_HUMAN	neugrin	154					neuron differentiation	extracellular region|nucleus				large_intestine(2)|ovary(1)	3	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			GCAGCACCTCCGGGGCTCTGG	0.493													20	94					0	0	1	0	0
GABARAPL3	23766	broad.mit.edu	37	15	90892024	90892024	+	RNA	SNP	C	T	T	rs148461842	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90892024C>T	uc010uqf.1	-	1		c.656G>A				NR_028287				Homo sapiens GABA-A receptor-associated protein mRNA, complete cds.												0						ACACACACACCCCTCCCCTAC	0.517													16	21					0	0	1	0	0
ZNF774	342132	broad.mit.edu	37	15	90897934	90897934	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90897934C>T	uc002bpk.3	+	2	228	c.42C>T	c.(40-42)CAC>CAT	p.H14H		NM_001004309	NP_001004309	Q6NX45	ZN774_HUMAN	zinc finger protein 774	14	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(11;0.00551)|Lung NSC(78;0.0158)|all_lung(78;0.0331)		BRCA - Breast invasive adenocarcinoma(143;0.0224)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			TACCTGGACACTGCTTAGAGA	0.448													8	26					0	0	1	0	0
ZNF774	342132	broad.mit.edu	37	15	90897947	90897947	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90897947C>T	uc002bpk.3	+	2	241	c.55C>T	c.(55-57)CCT>TCT	p.P19S		NM_001004309	NP_001004309	Q6NX45	ZN774_HUMAN	zinc finger protein 774	19	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(11;0.00551)|Lung NSC(78;0.0158)|all_lung(78;0.0331)		BRCA - Breast invasive adenocarcinoma(143;0.0224)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			CTTAGAGAATCCTCTCCAGGA	0.413													12	26					0	0	1	0	0
ZNF774	342132	broad.mit.edu	37	15	90904247	90904247	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:90904247G>A	uc002bpk.3	+	4	1370	c.1184G>A	c.(1183-1185)CGA>CAA	p.R395Q		NM_001004309	NP_001004309	Q6NX45	ZN774_HUMAN	zinc finger protein 774	395	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(11;0.00551)|Lung NSC(78;0.0158)|all_lung(78;0.0331)		BRCA - Breast invasive adenocarcinoma(143;0.0224)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			AAGCACCAACGAATCCACACC	0.498													16	68					0	0	1	0	0
IQGAP1	8826	broad.mit.edu	37	15	91034604	91034604	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91034604C>T	uc002bpl.1	+	34	4389	c.4288C>T	c.(4288-4290)CGT>TGT	p.R1430C	IQGAP1_uc010uqg.1_Missense_Mutation_p.R51C	NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	1430	C2.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			ACGTGCTATCCGTGATGCCAA	0.408													13	83					0	0	1	0	0
CRTC3	64784	broad.mit.edu	37	15	91169121	91169122	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91169121_91169122CC>TT	uc002bpp.2	+	10	969_970	c.863_864CC>TT	c.(862-864)GCC>GTT	p.A288V	CRTC3_uc002bpo.2_Missense_Mutation_p.A288V	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	288					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			CCCCTGCCAGCCTCCCTGGACA	0.54			T	MAML2	salivary gland mucoepidermoid								71	531					0	0	1	0	0
BLM	641	broad.mit.edu	37	15	91292892	91292892	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91292892C>T	uc002bpr.2	+	3	491	c.394C>T	c.(394-396)CGG>TGG	p.R132W	BLM_uc010uqh.1_Missense_Mutation_p.R132W|BLM_uc010uqi.1_5'UTR|BLM_uc010bnx.2_Missense_Mutation_p.R132W	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	132					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			AAAGAAATCCCGGGATACTGC	0.388			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				13	90					0	0	1	0	0
BLM	641	broad.mit.edu	37	15	91312713	91312713	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91312713C>T	uc002bpr.2	+	12	2549	c.2452C>T	c.(2452-2454)CGC>TGC	p.R818C	BLM_uc010uqh.1_Missense_Mutation_p.R818C|BLM_uc010uqi.1_Missense_Mutation_p.R443C|BLM_uc010bnx.2_Missense_Mutation_p.R818C|BLM_uc002bps.1_Missense_Mutation_p.R380C	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	818	Helicase ATP-binding.				double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			GAATATGCTTCGCCAGAAGTT	0.428			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				65	92					0	0	1	0	0
FES	2242	broad.mit.edu	37	15	91433170	91433170	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91433170G>A	uc002bpv.2	+	8	1123	c.1027G>A	c.(1027-1029)GAG>AAG	p.E343K	FES_uc010uqj.1_Missense_Mutation_p.E285K|FES_uc010uqk.1_Missense_Mutation_p.E325K|FES_uc002bpw.2_RNA|FES_uc010bny.2_Missense_Mutation_p.E285K|FES_uc002bpx.2_Missense_Mutation_p.E343K|FES_uc002bpy.2_Missense_Mutation_p.E285K	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	343	Potential.				axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GAATGAAGAGGAGAACACCCA	0.647													25	98					0	0	1	0	0
MAN2A2	4122	broad.mit.edu	37	15	91449187	91449187	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91449187C>T	uc010bnz.2	+	5	763	c.648C>T	c.(646-648)GTC>GTT	p.V216V	MAN2A2_uc010boa.2_Silent_p.V258V|MAN2A2_uc002bqc.2_Silent_p.V216V|MAN2A2_uc010uql.1_5'Flank|MAN2A2_uc010uqm.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	216	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GGGCAGAGGTCTCCTTCTTCG	0.577													17	40					0	0	1	0	0
UNC45A	55898	broad.mit.edu	37	15	91492021	91492021	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91492021C>T	uc002bqg.2	+	13	2215	c.1875C>T	c.(1873-1875)CCC>CCT	p.P625P	UNC45A_uc002bqd.2_Silent_p.P610P|UNC45A_uc010uqr.1_Silent_p.P17P|UNC45A_uc002bqi.2_5'Flank	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	625					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			AGCAGCACCCCAAGGTGAGGG	0.577													8	17					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91795141	91795141	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91795141C>T	uc002bqv.2	+	2	935	c.544C>T	c.(544-546)CTG>TTG	p.L182L	SV2B_uc002bqt.2_Silent_p.L182L|SV2B_uc010uqv.1_Silent_p.L31L|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	182	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			CAGCATGTCTCTGGCCGTCAA	0.562													11	155					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91795689	91795689	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91795689C>T	uc002bqv.2	+	3	1114	c.723C>T	c.(721-723)ATC>ATT	p.I241I	SV2B_uc002bqt.2_Silent_p.I241I|SV2B_uc010uqv.1_Silent_p.I90I|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	241	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			GGCTGGGCATCTTCTGGATGA	0.532													29	76					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91795728	91795728	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91795728C>T	uc002bqv.2	+	3	1153	c.762C>T	c.(760-762)GCC>GCT	p.A254A	SV2B_uc002bqt.2_Silent_p.A254A|SV2B_uc010uqv.1_Silent_p.A103A|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	254	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			CTGCCATGGCCTGGAGCATCA	0.542													13	59					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91809811	91809811	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91809811G>A	uc002bqv.2	+	6	1400	c.1009_splice	c.e6-1	p.V337_splice	SV2B_uc002bqt.2_Splice_Site_p.V337_splice|SV2B_uc010uqv.1_Splice_Site_p.V186_splice|SV2B_uc002bqu.3_Splice_Site	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog						neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TTACTTTTCAGGTTTCCAACA	0.373													18	69					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91811697	91811697	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91811697C>T	uc002bqv.2	+	8	1626	c.1235C>T	c.(1234-1236)CCT>CTT	p.P412L	SV2B_uc002bqt.2_Missense_Mutation_p.P412L|SV2B_uc010uqv.1_Missense_Mutation_p.P261L|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	412	Extracellular (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			GTTTGGTTTCCTGATATGATC	0.418													53	172					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91827259	91827259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:91827259G>A	uc002bqv.2	+	10	1907	c.1516G>A	c.(1516-1518)GAG>AAG	p.E506K	SV2B_uc010uqv.1_Missense_Mutation_p.E355K|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	506	Extracellular (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			AGACCTCTACGAGCACAAGTT	0.512													34	334					0	0	1	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92459677	92459677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:92459677C>T	uc002bqx.2	+	2	836	c.635C>T	c.(634-636)TCG>TTG	p.S212L	SLCO3A1_uc002bqy.2_Missense_Mutation_p.S212L|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.S154L	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	212	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			AAGGACTCCTCGCTCTATATA	0.587													3	22					0	0	1	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92638150	92638150	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:92638150G>T	uc002bqx.2	+	3	887	c.686G>T	c.(685-687)GGG>GTG	p.G229V	SLCO3A1_uc002bqy.2_Missense_Mutation_p.G229V|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.G171V	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	229	Helical; Name=5; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			CCAGCCTGCGGGTTTATCCTG	0.428													21	99					7.92952e-12	7.96004e-12	1	1	0
SLCO3A1	28232	broad.mit.edu	37	15	92647599	92647599	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:92647599C>G	uc002bqx.2	+	4	1037	c.836C>G	c.(835-837)TCC>TGC	p.S279C	SLCO3A1_uc002bqy.2_Missense_Mutation_p.S279C|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.S221C	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	279	Helical; Name=6; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			TTCTTCTCTTCCCTCTTGATG	0.587													13	233					0	0	1	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92647601	92647601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:92647601C>T	uc002bqx.2	+	4	1039	c.838C>T	c.(838-840)CTC>TTC	p.L280F	SLCO3A1_uc002bqy.2_Missense_Mutation_p.L280F|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.L222F	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	280	Helical; Name=6; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			CTTCTCTTCCCTCTTGATGTT	0.577													12	225					0	0	1	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92988086	92988086	+	Missense_Mutation	SNP	G	A	A	rs147607028	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:92988086G>A	uc002bra.2	+	5	924	c.769G>A	c.(769-771)GAG>AAG	p.E257K	ST8SIA2_uc002brb.2_Missense_Mutation_p.E236K	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	257	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			GTGGGTCAACGAGCTTATCCT	0.642													38	75					0	0	1	0	0
C15orf32	145858	broad.mit.edu	37	15	93015448	93015449	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:93015448_93015449GG>AA	uc002brc.1	+	1	542_543	c.70_71GG>AA	c.(70-72)GGG>AAG	p.G24K	C15orf32_uc010bod.1_RNA	NM_153040	NP_694585	Q32M92	CO032_HUMAN	hypothetical protein LOC145858	24										ovary(1)	1	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0493)|OV - Ovarian serous cystadenocarcinoma(32;0.125)			GAGTGGGGAAGGGGTCCCACCT	0.455													20	97					0	0	1	0	0
C15orf32	145858	broad.mit.edu	37	15	93015479	93015479	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:93015479C>T	uc002brc.1	+	1	573	c.101C>T	c.(100-102)ACT>ATT	p.T34I	C15orf32_uc010bod.1_RNA	NM_153040	NP_694585	Q32M92	CO032_HUMAN	hypothetical protein LOC145858	34										ovary(1)	1	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0493)|OV - Ovarian serous cystadenocarcinoma(32;0.125)			AACACCAAGACTTCCCCAAGA	0.527													74	93					0	0	1	0	0
C15orf32	145858	broad.mit.edu	37	15	93016251	93016251	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:93016251G>A	uc002brc.1	+	2	915	c.443G>A	c.(442-444)GGA>GAA	p.G148E	C15orf32_uc010bod.1_RNA	NM_153040	NP_694585	Q32M92	CO032_HUMAN	hypothetical protein LOC145858	148										ovary(1)	1	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0493)|OV - Ovarian serous cystadenocarcinoma(32;0.125)			TTCAATTGCGGAAGCATAGAG	0.468													73	78					0	0	1	0	0
CHD2	1106	broad.mit.edu	37	15	93499834	93499834	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:93499834C>T	uc002bsp.2	+	16	2530	c.1955C>T	c.(1954-1956)TCC>TTC	p.S652F	CHD2_uc002bso.1_Missense_Mutation_p.S652F	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	652	Helicase ATP-binding.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			CTTCAGAATTCCCTCAAAGAG	0.433													47	138					0	0	1	0	0
CHD2	1106	broad.mit.edu	37	15	93518142	93518142	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:93518142A>T	uc002bsp.2	+	20	3114	c.2539A>T	c.(2539-2541)AAA>TAA	p.K847*	CHD2_uc002bso.1_Nonsense_Mutation_p.K847*|CHD2_uc010bog.1_Nonsense_Mutation_p.K92*|CHD2_uc010boh.1_Nonsense_Mutation_p.K41*	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	847	Helicase C-terminal.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			AGAAATCCGAAAACAGGCACT	0.438													27	90					0	0	1	0	0
CHD2	1106	broad.mit.edu	37	15	93528871	93528871	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:93528871C>T	uc002bsp.2	+	26	3956	c.3381C>T	c.(3379-3381)CTC>CTT	p.L1127L	CHD2_uc002bso.1_Silent_p.L1127L	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1127					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			GGAAGGACCTCGTGGAGGGAT	0.527													82	137					0	0	1	0	0
RGMA	56963	broad.mit.edu	37	15	93588254	93588254	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:93588254G>A	uc002bss.1	-	4	1599	c.1327C>T	c.(1327-1329)CTG>TTG	p.L443L	RGMA_uc002bsq.1_Silent_p.L427L|RGMA_uc010boi.1_Silent_p.L334L|RGMA_uc002bsr.1_Silent_p.L334L|RGMA_uc010urc.1_Silent_p.L451L	NM_020211	NP_064596	Q96B86	RGMA_HUMAN	RGM domain family, member A precursor	443					axon guidance	anchored to membrane|endoplasmic reticulum|plasma membrane					0	Lung NSC(78;0.0542)|all_lung(78;0.0786)		BRCA - Breast invasive adenocarcinoma(143;0.0312)|OV - Ovarian serous cystadenocarcinoma(32;0.108)			AGCAGGGCCAGGAGCGGGACG	0.716													13	14					0	0	1	0	0
RGMA	56963	broad.mit.edu	37	15	93588319	93588319	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:93588319G>A	uc002bss.1	-	4	1534	c.1262C>T	c.(1261-1263)CCA>CTA	p.P421L	RGMA_uc002bsq.1_Missense_Mutation_p.P405L|RGMA_uc010boi.1_Missense_Mutation_p.P312L|RGMA_uc002bsr.1_Missense_Mutation_p.P312L|RGMA_uc010urc.1_Missense_Mutation_p.P429L	NM_020211	NP_064596	Q96B86	RGMA_HUMAN	RGM domain family, member A precursor	421					axon guidance	anchored to membrane|endoplasmic reticulum|plasma membrane					0	Lung NSC(78;0.0542)|all_lung(78;0.0786)		BRCA - Breast invasive adenocarcinoma(143;0.0312)|OV - Ovarian serous cystadenocarcinoma(32;0.108)			CGCCCTGCCTGGCAGGTCCCG	0.647													6	5					0	0	1	0	0
RGMA	56963	broad.mit.edu	37	15	93588440	93588440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:93588440C>T	uc002bss.1	-	4	1413	c.1141G>A	c.(1141-1143)GAC>AAC	p.D381N	RGMA_uc002bsq.1_Missense_Mutation_p.D365N|RGMA_uc010boi.1_Missense_Mutation_p.D272N|RGMA_uc002bsr.1_Missense_Mutation_p.D272N|RGMA_uc010urc.1_Missense_Mutation_p.D389N	NM_020211	NP_064596	Q96B86	RGMA_HUMAN	RGM domain family, member A precursor	381					axon guidance	anchored to membrane|endoplasmic reticulum|plasma membrane					0	Lung NSC(78;0.0542)|all_lung(78;0.0786)		BRCA - Breast invasive adenocarcinoma(143;0.0312)|OV - Ovarian serous cystadenocarcinoma(32;0.108)			GTGAGGAGGTCGAAGACGCAG	0.592													3	22					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94841626	94841626	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94841626G>A	uc002btj.2	+	1	197	c.132G>A	c.(130-132)TTG>TTA	p.L44L	MCTP2_uc010urg.1_Silent_p.L44L|MCTP2_uc002bti.2_Silent_p.L44L|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Silent_p.L44L|MCTP2_uc002btg.3_Silent_p.L44L|MCTP2_uc002bth.3_Silent_p.L44L	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	44					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GGCATCACTTGGACCGCCGTC	0.572													24	107					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94841843	94841843	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94841843G>A	uc002btj.2	+	1	414	c.349G>A	c.(349-351)GAA>AAA	p.E117K	MCTP2_uc010urg.1_Missense_Mutation_p.E117K|MCTP2_uc002bti.2_Missense_Mutation_p.E117K|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Missense_Mutation_p.E117K|MCTP2_uc002btg.3_Missense_Mutation_p.E117K|MCTP2_uc002bth.3_Missense_Mutation_p.E117K	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	117					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CCATGTGGTGGAAACAGACTC	0.532													36	203					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94841951	94841951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94841951G>A	uc002btj.2	+	1	522	c.457G>A	c.(457-459)GAG>AAG	p.E153K	MCTP2_uc010urg.1_Missense_Mutation_p.E153K|MCTP2_uc002bti.2_Missense_Mutation_p.E153K|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Missense_Mutation_p.E153K|MCTP2_uc002btg.3_Missense_Mutation_p.E153K|MCTP2_uc002bth.3_Missense_Mutation_p.E153K	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	153					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TGCACCAGAAGAGCCAGAGGT	0.358													29	101					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94882608	94882608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94882608G>A	uc002btj.2	+	4	792	c.727G>A	c.(727-729)GAT>AAT	p.D243N	MCTP2_uc010urg.1_Missense_Mutation_p.D243N|MCTP2_uc002bti.2_Missense_Mutation_p.D243N|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Missense_Mutation_p.D243N|MCTP2_uc002btg.3_Missense_Mutation_p.D243N|MCTP2_uc002bth.3_Missense_Mutation_p.D243N	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	243	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CCCAGTATGGGATGAGATAGT	0.358													43	145					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94884136	94884136	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94884136G>A	uc002btj.2	+	6	1017	c.952G>A	c.(952-954)GGT>AGT	p.G318S	MCTP2_uc010urg.1_Missense_Mutation_p.G318S|MCTP2_uc002bti.2_Missense_Mutation_p.G318S|MCTP2_uc010boj.2_Missense_Mutation_p.G47S|MCTP2_uc010bok.2_Missense_Mutation_p.G318S|MCTP2_uc002btg.3_Missense_Mutation_p.G318S|MCTP2_uc002bth.3_Missense_Mutation_p.G318S	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	318					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GGTAAAACAGGGTGATTTCAA	0.373													14	71					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94884139	94884139	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94884139G>A	uc002btj.2	+	6	1020	c.955G>A	c.(955-957)GAT>AAT	p.D319N	MCTP2_uc010urg.1_Missense_Mutation_p.D319N|MCTP2_uc002bti.2_Missense_Mutation_p.D319N|MCTP2_uc010boj.2_Missense_Mutation_p.D48N|MCTP2_uc010bok.2_Missense_Mutation_p.D319N|MCTP2_uc002btg.3_Missense_Mutation_p.D319N|MCTP2_uc002bth.3_Missense_Mutation_p.D319N	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	319					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AAAACAGGGTGATTTCAAGAG	0.373													14	67					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94888377	94888377	+	Missense_Mutation	SNP	G	A	A	rs139457907		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94888377G>A	uc002btj.2	+	7	1054	c.989G>A	c.(988-990)CGA>CAA	p.R330Q	MCTP2_uc010urg.1_Missense_Mutation_p.R330Q|MCTP2_uc002bti.2_Missense_Mutation_p.R330Q|MCTP2_uc010boj.2_Missense_Mutation_p.R59Q|MCTP2_uc010bok.2_Missense_Mutation_p.R330Q	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	330					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AATCGGAAGCGATTAAGTGCC	0.318													6	63					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94888394	94888394	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94888394G>A	uc002btj.2	+	7	1070	c.1005_splice	c.e7+1	p.K335_splice	MCTP2_uc010urg.1_Splice_Site_p.K335_splice|MCTP2_uc002bti.2_Splice_Site_p.K335_splice|MCTP2_uc010boj.2_Splice_Site_p.K64_splice|MCTP2_uc010bok.2_Splice_Site_p.K335_splice	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1						calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TGCCAGCAAGGTAAATATACT	0.338													8	55					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94899510	94899510	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94899510G>A	uc002btj.2	+	8	1215	c.1150G>A	c.(1150-1152)GAT>AAT	p.D384N	MCTP2_uc010urg.1_Missense_Mutation_p.D384N|MCTP2_uc002bti.2_Missense_Mutation_p.D384N|MCTP2_uc010boj.2_Missense_Mutation_p.D113N|MCTP2_uc010bok.2_Missense_Mutation_p.D384N|MCTP2_uc002btk.3_5'UTR|MCTP2_uc002btl.2_5'UTR	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	384	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AAAACTGGGAGATCAGAGGTA	0.333													57	66					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94927321	94927321	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94927321C>T	uc002btj.2	+	12	1718	c.1653C>T	c.(1651-1653)AAC>AAT	p.N551N	MCTP2_uc002bti.2_Silent_p.N551N|MCTP2_uc010boj.2_Silent_p.N280N|MCTP2_uc010bok.2_Silent_p.N551N|MCTP2_uc002btk.3_Silent_p.N139N|MCTP2_uc002btl.2_Silent_p.N139N	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	551	C2 3.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TCTACAAAAACCTCAACCCTG	0.438													21	27					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94945194	94945194	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94945194C>T	uc002btj.2	+	16	2096	c.2031C>T	c.(2029-2031)TTC>TTT	p.F677F	MCTP2_uc010boj.2_Silent_p.F406F|MCTP2_uc010bok.2_Silent_p.F677F|MCTP2_uc002btk.3_Silent_p.F265F|MCTP2_uc002btl.2_Silent_p.F265F	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	677					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CAATGCAGTTCCTTAAAAGCT	0.353													21	121					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94983447	94983448	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:94983447_94983448CC>TT	uc002btj.2	+	17	2193_2194	c.2128_2129CC>TT	c.(2128-2130)CCC>TTC	p.P710F	MCTP2_uc010boj.2_Missense_Mutation_p.P439F|MCTP2_uc010bok.2_Intron|MCTP2_uc002btl.2_Missense_Mutation_p.P298F	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	710	Helical; (Potential).				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			ATATATGATCCCCTTGGCATTG	0.416													47	355					0	0	1	0	0
SPATA8	145946	broad.mit.edu	37	15	97327486	97327486	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:97327486G>A	uc002bue.2	+	2	403	c.193G>A	c.(193-195)GAA>AAA	p.E65K	uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	65										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			GCCTGCAAAGGAAGGTAAGTA	0.577													15	76					0	0	1	0	0
ARRDC4	91947	broad.mit.edu	37	15	98512567	98512567	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:98512567C>T	uc010bom.2	+	5	999	c.840C>T	c.(838-840)TCC>TCT	p.S280S	ARRDC4_uc002bui.3_Silent_p.S193S	NM_183376	NP_899232	Q8NCT1	ARRD4_HUMAN	arrestin domain containing 4	280					signal transduction						0	Melanoma(26;0.00539)|Lung NSC(78;0.0125)|all_lung(78;0.0222)		OV - Ovarian serous cystadenocarcinoma(32;0.0417)			TTACTCCATCCATCCTGGATT	0.428													60	59					0	0	1	0	0
ARRDC4	91947	broad.mit.edu	37	15	98513881	98513881	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:98513881C>T	uc010bom.2	+	7	1267	c.1108C>T	c.(1108-1110)CCT>TCT	p.P370S	ARRDC4_uc002bui.3_Missense_Mutation_p.P283S	NM_183376	NP_899232	Q8NCT1	ARRD4_HUMAN	arrestin domain containing 4	370					signal transduction						0	Melanoma(26;0.00539)|Lung NSC(78;0.0125)|all_lung(78;0.0222)		OV - Ovarian serous cystadenocarcinoma(32;0.0417)			TCCTCCTTACCCTCAACCCCC	0.438													70	69					0	0	1	0	0
ARRDC4	91947	broad.mit.edu	37	15	98514412	98514412	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:98514412C>T	uc010bom.2	+	8	1411	c.1252C>T	c.(1252-1254)CTC>TTC	p.L418F	ARRDC4_uc002bui.3_Missense_Mutation_p.L331F	NM_183376	NP_899232	Q8NCT1	ARRD4_HUMAN	arrestin domain containing 4	418					signal transduction						0	Melanoma(26;0.00539)|Lung NSC(78;0.0125)|all_lung(78;0.0222)		OV - Ovarian serous cystadenocarcinoma(32;0.0417)			TTCCTTCATTCTCTGAACGTA	0.398													12	177					0	0	1	0	0
IGF1R	3480	broad.mit.edu	37	15	99456460	99456460	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:99456460C>T	uc002bul.2	+	8	1827	c.1777C>T	c.(1777-1779)CAT>TAT	p.H593Y	IGF1R_uc010urq.1_Missense_Mutation_p.H593Y|IGF1R_uc010bon.2_Missense_Mutation_p.H593Y|IGF1R_uc010urr.1_Missense_Mutation_p.H43Y	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	593	Fibronectin type-III 1.				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	GGAGAACGACCATATCCGTGG	0.552													27	137					0	0	1	0	0
SYNM	23336	broad.mit.edu	37	15	99670140	99670140	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:99670140C>T	uc002bup.2	+	6	1695	c.1575C>T	c.(1573-1575)TTC>TTT	p.F525F	SYNM_uc002buo.2_Silent_p.F525F|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	525	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						AGAAAATGTTCGATTCTAAAG	0.448													21	21					0	0	1	0	0
TTC23	64927	broad.mit.edu	37	15	99740154	99740154	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:99740154G>A	uc002bur.2	-	8	1260	c.729C>T	c.(727-729)CTC>CTT	p.L243L	TTC23_uc002bus.2_Silent_p.L243L|TTC23_uc002but.2_Silent_p.L243L|TTC23_uc002buu.2_Silent_p.L243L|TTC23_uc002buv.2_Silent_p.L243L|TTC23_uc002bux.2_Silent_p.L243L|TTC23_uc002buw.2_Silent_p.L243L|TTC23_uc010boq.2_RNA|TTC23_uc002buy.2_Silent_p.L243L|TTC23_uc010bor.2_Silent_p.L243L|TTC23_uc002buz.2_Silent_p.L243L	NM_022905	NP_075056	Q5W5X9	TTC23_HUMAN	tetratricopeptide repeat domain 23	243							binding				0	all_cancers(4;1.49e-13)|Lung NSC(78;0.000545)|all_lung(78;0.00121)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		all cancers(5;8.11e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00215)			ATACATCGTGGAGTCCCAGGG	0.468													79	111					0	0	1	0	0
TTC23	64927	broad.mit.edu	37	15	99759112	99759112	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:99759112G>A	uc002bur.2	-	6	977	c.446C>T	c.(445-447)TCC>TTC	p.S149F	TTC23_uc002bus.2_Missense_Mutation_p.S149F|TTC23_uc002but.2_Missense_Mutation_p.S149F|TTC23_uc002buu.2_Missense_Mutation_p.S149F|TTC23_uc002buv.2_Missense_Mutation_p.S149F|TTC23_uc002bux.2_Missense_Mutation_p.S149F|TTC23_uc002buw.2_Missense_Mutation_p.S149F|TTC23_uc010boq.2_RNA|TTC23_uc002buy.2_Missense_Mutation_p.S149F|TTC23_uc010bor.2_Missense_Mutation_p.S149F|TTC23_uc002buz.2_Missense_Mutation_p.S149F	NM_022905	NP_075056	Q5W5X9	TTC23_HUMAN	tetratricopeptide repeat domain 23	149	TPR 2.						binding				0	all_cancers(4;1.49e-13)|Lung NSC(78;0.000545)|all_lung(78;0.00121)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		all cancers(5;8.11e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00215)			CTTTTGAAGGGAGAGTAAAGC	0.393													79	105					0	0	1	0	0
LRRC28	123355	broad.mit.edu	37	15	99828126	99828126	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:99828126G>A	uc002bva.1	+	5	510	c.355G>A	c.(355-357)GCT>ACT	p.A119T	LRRC28_uc010urs.1_RNA|LRRC28_uc002bvb.1_5'UTR|LRRC28_uc010urt.1_5'UTR|LRRC28_uc002bvc.1_Missense_Mutation_p.A119T|LRRC28_uc010uru.1_Missense_Mutation_p.A119T|LRRC28_uc002bvd.1_Intron	NM_144598	NP_653199	Q86X40	LRC28_HUMAN	leucine rich repeat containing 28	119	LRR 5.										0	Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00106)			TCTTCGATTAGCTAATAACCA	0.368													26	160					0	0	1	0	0
MEF2A	4205	broad.mit.edu	37	15	100214787	100214787	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:100214787C>T	uc010urw.1	+	5	945	c.586C>T	c.(586-588)CCT>TCT	p.P196S	MEF2A_uc010urv.1_Missense_Mutation_p.P126S|MEF2A_uc010bos.2_Missense_Mutation_p.P194S|MEF2A_uc002bvf.2_Missense_Mutation_p.P196S|MEF2A_uc002bve.2_Missense_Mutation_p.P194S|MEF2A_uc002bvg.2_Missense_Mutation_p.P194S|MEF2A_uc002bvi.2_Missense_Mutation_p.P194S|MEF2A_uc010bot.2_Missense_Mutation_p.P126S	NM_005587	NP_005578	Q02078	MEF2A_HUMAN	myocyte enhancer factor 2A isoform 1	196					apoptosis|BMK cascade|cardiac conduction|cellular response to calcium ion|dendrite morphogenesis|innate immune response|mitochondrial genome maintenance|mitochondrion distribution|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|ventricular cardiac myofibril development	nuclear chromatin|nucleoplasm	activating transcription factor binding|histone acetyltransferase binding|histone deacetylase binding|protein heterodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|SMAD binding			ovary(1)	1	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00085)			TCCTGGAGCTCCTCAGAGACC	0.433													14	182					0	0	1	0	0
C15orf51	196968	broad.mit.edu	37	15	100332550	100332551	+	RNA	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:100332550_100332551GG>AA	uc010urx.1	-	5		c.1641_1642CC>TT			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GGCCGTCGGAGGGACCTCAGCG	0.584													14	132					0	0	1	0	0
C15orf51	196968	broad.mit.edu	37	15	100332827	100332827	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:100332827G>A	uc010urx.1	-	5		c.1365C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TGACTACAACGAGGGACACAG	0.582													14	112					0	0	1	0	0
LASS3	204219	broad.mit.edu	37	15	100996191	100996191	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:100996191G>A	uc002bvz.2	-	12	1408	c.906C>T	c.(904-906)ATC>ATT	p.I302I	LASS3_uc002bwa.2_Silent_p.I313I|LASS3_uc002bwb.2_Silent_p.I302I	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	302	Helical; (Potential).|TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			GGTTGAGGAAGATGTATGAAA	0.398													19	90					0	0	1	0	0
LASS3	204219	broad.mit.edu	37	15	101013182	101013182	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101013182G>A	uc002bvz.2	-	10	1187	c.685C>T	c.(685-687)CGC>TGC	p.R229C	LASS3_uc002bwa.2_Missense_Mutation_p.R240C|LASS3_uc002bwb.2_Missense_Mutation_p.R229C	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	229	TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			GTCCCACTGCGAATATAATTA	0.438													15	156					0	0	1	0	0
LASS3	204219	broad.mit.edu	37	15	101031041	101031041	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101031041G>A	uc002bvz.2	-	5	771	c.269C>T	c.(268-270)TCC>TTC	p.S90F	LASS3_uc002bwa.2_Missense_Mutation_p.S101F|LASS3_uc002bwb.2_Missense_Mutation_p.S90F	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	90	Homeobox.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			TTGCCTTGTGGAATGTTTGAA	0.338													13	65					0	0	1	0	0
ALDH1A3	220	broad.mit.edu	37	15	101434167	101434167	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101434167C>T	uc002bwn.3	+	6	650	c.546C>T	c.(544-546)TTC>TTT	p.F182F	ALDH1A3_uc010bpb.2_Intron|uc002bwo.1_RNA	NM_000693	NP_000684	P47895	AL1A3_HUMAN	aldehyde dehydrogenase 1A3	182					retinal metabolic process	cytoplasm	aldehyde dehydrogenase|protein homodimerization activity			central_nervous_system(2)|lung(1)|pancreas(1)	4	Lung NSC(78;0.00144)|all_lung(78;0.0018)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)		NADH(DB00157)|Vitamin A(DB00162)	AGTGGAACTTCCCCCTGCTGA	0.597													32	188					0	0	1	0	0
ALDH1A3	220	broad.mit.edu	37	15	101436147	101436147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101436147C>T	uc002bwn.3	+	7	780	c.676C>T	c.(676-678)CCT>TCT	p.P226S	ALDH1A3_uc010bpb.2_Missense_Mutation_p.P119S|uc002bwo.1_RNA	NM_000693	NP_000684	P47895	AL1A3_HUMAN	aldehyde dehydrogenase 1A3	226					retinal metabolic process	cytoplasm	aldehyde dehydrogenase|protein homodimerization activity			central_nervous_system(2)|lung(1)|pancreas(1)	4	Lung NSC(78;0.00144)|all_lung(78;0.0018)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)		NADH(DB00157)|Vitamin A(DB00162)	GGCCGGGTTCCCTCCAGGAGT	0.557													10	32					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101523896	101523896	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101523896C>T	uc002bwr.2	+	4	744	c.425C>T	c.(424-426)TCC>TTC	p.S142F	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bwq.1_Missense_Mutation_p.S142F	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	142	ANK 2.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TTGCTTGAGTCCTTACCAGGT	0.527													25	78					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101565044	101565044	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101565044G>A	uc002bwr.2	+	16	2423	c.2104G>A	c.(2104-2106)GGA>AGA	p.G702R	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	702	Roc.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GGACATCGGGGGACCGGCCAG	0.582													38	213					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101566311	101566311	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101566311G>A	uc002bwr.2	+	17	2693	c.2374G>A	c.(2374-2376)GGC>AGC	p.G792S	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	792	Roc.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CAGGGCCACAGGCTTCCCAGA	0.582													12	64					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101592065	101592065	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101592065G>A	uc002bwr.2	+	24	3908	c.3589G>A	c.(3589-3591)GCC>ACC	p.A1197T	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_5'Flank	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1197					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TGTCCTGACGGCCATCGAGCG	0.637													7	68					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101606018	101606018	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101606018G>A	uc002bwr.2	+	32	5695	c.5376G>A	c.(5374-5376)TTG>TTA	p.L1792L	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1792					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TGCGGCCCTTGGACACGGAAC	0.642													9	49					0	0	1	0	0
CHSY1	22856	broad.mit.edu	37	15	101718571	101718571	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101718571G>A	uc002bwt.1	-	4	1914	c.1431C>T	c.(1429-1431)TTC>TTT	p.F477F	CHSY1_uc010usd.1_Silent_p.F205F	NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	477	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GGATTTTGCTGAAAGTCTGCT	0.488													40	33					0	0	1	0	0
PCSK6	5046	broad.mit.edu	37	15	101865215	101865215	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101865215C>T	uc002bwy.2	-	18	2531	c.2217G>A	c.(2215-2217)GGG>GGA	p.G739G	PCSK6_uc010bpd.2_Silent_p.G535G|PCSK6_uc010bpe.2_Silent_p.G726G|PCSK6_uc002bxa.2_Silent_p.G739G|PCSK6_uc002bxb.2_Silent_p.G726G	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	739	CRM (Cys-rich motif).				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTGCTGTGTCCCCAAAGTAGC	0.657													26	23					0	0	1	0	0
PCSK6	5046	broad.mit.edu	37	15	101865230	101865230	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101865230G>A	uc002bwy.2	-	18	2516	c.2202C>T	c.(2200-2202)CCC>CCT	p.P734P	PCSK6_uc010bpd.2_Silent_p.P530P|PCSK6_uc010bpe.2_Silent_p.P721P|PCSK6_uc002bxa.2_Silent_p.P734P|PCSK6_uc002bxb.2_Silent_p.P721P	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	734	CRM (Cys-rich motif).				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGTAGCCCAAGGGGCACACAC	0.637													5	38					0	0	1	0	0
PCSK6	5046	broad.mit.edu	37	15	101906464	101906464	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101906464C>T	uc002bwy.2	-	14	2109	c.1795G>A	c.(1795-1797)GAA>AAA	p.E599K	PCSK6_uc010bpd.2_Missense_Mutation_p.E395K|PCSK6_uc010bpe.2_Missense_Mutation_p.E599K|PCSK6_uc002bxa.2_Missense_Mutation_p.E599K|PCSK6_uc002bxb.2_Missense_Mutation_p.E599K|PCSK6_uc002bxc.1_Missense_Mutation_p.E599K|PCSK6_uc002bxd.1_Missense_Mutation_p.E599K|PCSK6_uc002bxe.2_Missense_Mutation_p.E599K|PCSK6_uc002bxf.1_Missense_Mutation_p.E99K	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	599	Homo B/P.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CACTGCCCTTCAGCCTTTTCT	0.502													26	26					0	0	1	0	0
PCSK6	5046	broad.mit.edu	37	15	101971537	101971537	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:101971537C>T	uc002bwy.2	-	5	959	c.645G>A	c.(643-645)CTG>CTA	p.L215L	PCSK6_uc010bpd.2_Silent_p.L85L|PCSK6_uc010bpe.2_Silent_p.L215L|PCSK6_uc002bxa.2_Silent_p.L215L|PCSK6_uc002bxb.2_Silent_p.L215L|PCSK6_uc002bxc.1_Silent_p.L215L|PCSK6_uc002bxd.1_Silent_p.L215L|PCSK6_uc002bxe.2_Silent_p.L215L|PCSK6_uc002bxg.1_Silent_p.L215L	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	215	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AATTTGGGGCCAGGTCAGGGT	0.448													14	50					0	0	1	0	0
TARSL2	123283	broad.mit.edu	37	15	102241367	102241367	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:102241367G>A	uc002bxm.2	-	10	1297	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	TARSL2_uc002bxl.2_5'UTR|TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	414					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TCAAATCGTGGAAAAAGAAAA	0.323													46	51					0	0	1	0	0
OR4F6	390648	broad.mit.edu	37	15	102346082	102346082	+	Missense_Mutation	SNP	C	T	T	rs141580524	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:102346082C>T	uc010utr.1	+	1	160	c.160C>T	c.(160-162)CGT>TGT	p.R54C		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CTCTGACCCTCGTTTACAGTC	0.468													259	325					0	0	1	0	0
OR4F6	390648	broad.mit.edu	37	15	102346532	102346532	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:102346532G>A	uc010utr.1	+	1	610	c.610G>A	c.(610-612)GGA>AGA	p.G204R		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TGCCAATAGTGGATTTATTTC	0.343													45	187					0	0	1	0	0
OR4F15	390649	broad.mit.edu	37	15	102358521	102358521	+	Silent	SNP	C	T	T	rs143311907		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:102358521C>T	uc010uts.1	+	1	132	c.132C>T	c.(130-132)GTC>GTT	p.V44V		NM_001001674	NP_001001674	Q8NGB8	O4F15_HUMAN	olfactory receptor, family 4, subfamily F,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			GAAACCTTGTCATTGTATTCA	0.413													24	384					0	0	1	0	0
OR4F15	390649	broad.mit.edu	37	15	102358832	102358832	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:102358832C>T	uc010uts.1	+	1	443	c.443C>T	c.(442-444)TCC>TTC	p.S148F		NM_001001674	NP_001001674	Q8NGB8	O4F15_HUMAN	olfactory receptor, family 4, subfamily F,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TTAGCCACTTCCTCTATCATT	0.403													82	261					0	0	1	0	0
HBZ	3050	broad.mit.edu	37	16	202971	202971	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:202971G>A	uc002cft.1	+	1	118	c.63G>A	c.(61-63)CAG>CAA	p.Q21Q		NM_005332	NP_005323	P02008	HBAZ_HUMAN	hemoglobin, zeta	21						hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		all_cancers(16;4.28e-07)|all_epithelial(16;2.09e-06)|Hepatocellular(16;0.000325)|Lung NSC(18;0.0104)|all_lung(18;0.0239)				TCTCCACGCAGGCCGACACCA	0.607													5	29					0	0	1	0	0
HBM	3042	broad.mit.edu	37	16	216426	216426	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:216426G>A	uc002cfu.1	+	2	276	c.252G>A	c.(250-252)GCG>GCA	p.A84A		NM_001003938	NP_001003938	Q6B0K9	HBM_HUMAN	hemoglobin mu chain	84						hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		all_cancers(16;1.62e-06)|all_epithelial(16;4.01e-06)|Hepatocellular(16;0.000325)|Lung NSC(18;0.0104)|all_lung(18;0.0239)				GCCCGCTGGCGGACCTGCACG	0.746													4	7					0	0	1	0	0
ITFG3	83986	broad.mit.edu	37	16	314141	314141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:314141C>T	uc002cgf.2	+	11	1510	c.1315C>T	c.(1315-1317)CTC>TTC	p.L439F	ITFG3_uc002cgg.2_Missense_Mutation_p.L439F|ITFG3_uc010uud.1_RNA|ITFG3_uc002cgh.2_Missense_Mutation_p.L439F	NM_032039	NP_114428	Q9H0X4	ITFG3_HUMAN	integrin alpha FG-GAP repeat containing 3	439	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1		all_cancers(16;0.000129)|all_epithelial(16;0.000206)|Hepatocellular(16;0.00264)|Lung NSC(18;0.0626)|all_lung(18;0.13)				CTTCTGGGGCCTCCACGAGCT	0.701													4	19					0	0	1	0	0
ARHGDIG	398	broad.mit.edu	37	16	332780	332780	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:332780G>A	uc002cgm.1	+	6	719	c.644G>A	c.(643-645)TGG>TAG	p.W215*	PDIA2_uc002cgn.1_5'UTR|PDIA2_uc010bqt.1_5'UTR|PDIA2_uc002cgo.1_5'Flank	NM_001176	NP_001167	Q99819	GDIR3_HUMAN	Rho GDP dissociation inhibitor (GDI) gamma	215					negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity			central_nervous_system(1)	1		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				TCCTGGGAGTGGGGTCTCTGC	0.652											OREG0003697	type=REGULATORY REGION|Gene=PDIA2|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	4	10					0	0	1	0	0
PDIA2	64714	broad.mit.edu	37	16	335186	335186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:335186G>A	uc002cgn.1	+	10	1889	c.781G>A	c.(781-783)GAG>AAG	p.E261K	PDIA2_uc010bqt.1_Missense_Mutation_p.E106K|PDIA2_uc002cgo.1_Missense_Mutation_p.E261K	NM_006849	NP_006840	Q13087	PDIA2_HUMAN	protein disulfide isomerase A2 precursor	261					apoptosis|cell redox homeostasis|glycerol ether metabolic process|protein folding|protein retention in ER lumen|response to hypoxia	endoplasmic reticulum lumen	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity|steroid binding			central_nervous_system(1)|skin(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				CCTGGTCACGGAGTTCAACAG	0.662													6	43					0	0	1	0	0
AXIN1	8312	broad.mit.edu	37	16	354414	354414	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:354414G>A	uc002cgp.1	-	5	1321	c.1144C>T	c.(1144-1146)CGC>TGC	p.R382C	AXIN1_uc002cgq.1_Missense_Mutation_p.R382C	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	382	Interaction with GSK3B (By similarity).				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				GGCTCCACGCGGACCTCCTTC	0.632													7	36					0	0	1	0	0
TMEM8A	58986	broad.mit.edu	37	16	426755	426755	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:426755G>A	uc002cgu.3	-	5	822	c.693C>T	c.(691-693)TCC>TCT	p.S231S	TMEM8A_uc002cgv.3_Silent_p.S38S	NM_021259	NP_067082	Q9HCN3	TMM8A_HUMAN	transmembrane protein 8 (five membrane-spanning	231	Extracellular (Potential).				cell adhesion	integral to plasma membrane				central_nervous_system(2)|pancreas(1)	3						GGCTCCCATTGGACACGCAGT	0.667													4	27					0	0	1	0	0
TMEM8A	58986	broad.mit.edu	37	16	427062	427062	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:427062G>A	uc002cgu.3	-	4	739	c.610C>T	c.(610-612)CTC>TTC	p.L204F	TMEM8A_uc002cgv.3_Missense_Mutation_p.L11F	NM_021259	NP_067082	Q9HCN3	TMM8A_HUMAN	transmembrane protein 8 (five membrane-spanning	204	Extracellular (Potential).				cell adhesion	integral to plasma membrane				central_nervous_system(2)|pancreas(1)	3						TGGGAGAGGAGGGTCTGAGGA	0.657											OREG0003703	type=REGULATORY REGION|Gene=TMEM8|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	10	47					0	0	1	0	0
DECR2	26063	broad.mit.edu	37	16	461033	461033	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:461033C>T	uc002chb.2	+	7	724	c.618C>T	c.(616-618)CTC>CTT	p.L206L	DECR2_uc002chc.2_Silent_p.L122L|DECR2_uc010bqv.2_Silent_p.L122L|DECR2_uc002chd.2_Silent_p.L122L|DECR2_uc002che.1_RNA	NM_020664	NP_065715	Q9NUI1	DECR2_HUMAN	2,4-dienoyl CoA reductase 2	206						peroxisome	2,4-dienoyl-CoA reductase (NADPH) activity|binding				0		Hepatocellular(16;0.00015)				TCAACAGCCTCGCCCCTGGCC	0.642													4	11					0	0	1	0	0
RAB11FIP3	9727	broad.mit.edu	37	16	521377	521377	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:521377C>T	uc002chf.2	+	3	1230	c.891C>T	c.(889-891)TTC>TTT	p.F297F		NM_014700	NP_055515	O75154	RFIP3_HUMAN	rab11-family interacting protein 3 isoform 1	297					cell cycle|cytokinesis|endocytic recycling|protein transport	centrosome|cleavage furrow|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding				0		Hepatocellular(16;0.0218)				TCGATGACTTCGTCACCTATG	0.602													6	9					0	0	1	0	0
SOLH	6650	broad.mit.edu	37	16	598008	598008	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:598008C>T	uc002chi.2	+	4	1533	c.1170C>T	c.(1168-1170)AGC>AGT	p.S390S	SOLH_uc002chh.1_Silent_p.S390S	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	390					proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				ACAAGCCCAGCCCCTGCGGCA	0.746													3	8					0	0	1	0	0
SOLH	6650	broad.mit.edu	37	16	601380	601380	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:601380C>T	uc002chi.2	+	8	2508	c.2145C>T	c.(2143-2145)CCC>CCT	p.P715P	SOLH_uc002chj.2_5'Flank	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	715	Calpain catalytic.				proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				GCCTGCGCCCCCGGCATGCCT	0.677													20	41					0	0	1	0	0
SOLH	6650	broad.mit.edu	37	16	601394	601394	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:601394C>T	uc002chi.2	+	8	2522	c.2159C>T	c.(2158-2160)TCC>TTC	p.S720F	SOLH_uc002chj.2_5'Flank	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	720	Calpain catalytic.				proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				CATGCCTACTCCATCCTGGAT	0.662													16	63					0	0	1	0	0
PIGQ	9091	broad.mit.edu	37	16	628806	628806	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:628806C>T	uc002cho.2	+	6	1193	c.1091C>T	c.(1090-1092)CCC>CTC	p.P364L	PIGQ_uc010bqw.2_Missense_Mutation_p.P364L|PIGQ_uc002chn.2_Missense_Mutation_p.P364L|PIGQ_uc010uui.1_Missense_Mutation_p.P378L|PIGQ_uc002chp.2_5'Flank	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	364	Helical; (Potential).|Leu-rich.				C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				CTCATGTCCCCCTTCGTGGAG	0.657													44	66					0	0	1	0	0
WDR90	197335	broad.mit.edu	37	16	705079	705079	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:705079C>T	uc002cii.1	+	14	1542	c.1488C>T	c.(1486-1488)GTC>GTT	p.V496V	WDR90_uc002cig.1_Silent_p.V496V|WDR90_uc002cih.1_Silent_p.V497V|WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_5'UTR|WDR90_uc002cil.1_5'Flank|WDR90_uc002cim.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	496										ovary(1)	1		Hepatocellular(780;0.0218)				GCGAGGTGGTCGTTCTGGCAA	0.652													13	70					0	0	1	0	0
WDR90	197335	broad.mit.edu	37	16	708645	708645	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:708645G>A	uc002cii.1	+	23	2941	c.2887G>A	c.(2887-2889)GGC>AGC	p.G963S	WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_Missense_Mutation_p.G490S|WDR90_uc002cil.1_RNA|WDR90_uc002cim.1_Missense_Mutation_p.G137S|WDR90_uc002cin.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	963	WD 10.									ovary(1)	1		Hepatocellular(780;0.0218)				GGCCAGCCCAGGCCCCCAGGT	0.697													9	24					0	0	1	0	0
NARFL	64428	broad.mit.edu	37	16	782336	782337	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:782336_782337GG>AA	uc002cjr.2	-	8	872_873	c.860_861CC>TT	c.(859-861)TCC>TTT	p.S287F	NARFL_uc002cjp.2_Missense_Mutation_p.S185F|NARFL_uc002cjq.2_Missense_Mutation_p.S185F|NARFL_uc002cjs.2_Missense_Mutation_p.S69F|NARFL_uc010uuq.1_Missense_Mutation_p.P96F	NM_022493	NP_071938	Q9H6Q4	NARFL_HUMAN	nuclear prelamin A recognition factor-like	287					iron-sulfur cluster assembly|oxygen homeostasis|regulation of transcription, DNA-dependent|response to hypoxia		4 iron, 4 sulfur cluster binding|metal ion binding				0		Hepatocellular(780;0.0218)				GGTCGGGGAGGGAGACGCCCTC	0.53													66	161					0	0	1	0	0
MSLN	10232	broad.mit.edu	37	16	817443	817443	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:817443C>T	uc002cjw.1	+	15	1644	c.1593C>T	c.(1591-1593)TTC>TTT	p.F531F	MSLN_uc002cjt.1_Silent_p.F523F|MSLN_uc002cju.1_Silent_p.F523F|MSLN_uc010brd.1_Silent_p.F522F|MSLN_uc002cjv.1_Silent_p.F523F|MSLN_uc002cjx.1_Silent_p.F523F|MSLN_uc002cjy.1_Silent_p.F188F|MIR662_hsa-mir-662|MI0003670_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	531					cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				TGGCCACGTTCATGAAGCTGC	0.458													32	83					0	0	1	0	0
MSLN	10232	broad.mit.edu	37	16	818396	818396	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:818396G>A	uc002cjw.1	+	16	1689	c.1638G>A	c.(1636-1638)GAG>GAA	p.E546E	MSLN_uc002cjt.1_Silent_p.E538E|MSLN_uc002cju.1_Silent_p.E538E|MSLN_uc010brd.1_Silent_p.E537E|MSLN_uc002cjv.1_Silent_p.E538E|MSLN_uc002cjx.1_Silent_p.E538E|MSLN_uc002cjy.1_Silent_p.E203E|MIR662_hsa-mir-662|MI0003670_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	546					cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				CTGTGGCTGAGGTGCAGAAAC	0.682													10	25					0	0	1	0	0
MSLN	10232	broad.mit.edu	37	16	818660	818660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:818660G>A	uc002cjw.1	+	17	1871	c.1820G>A	c.(1819-1821)GGG>GAG	p.G607E	MSLN_uc002cjt.1_Missense_Mutation_p.G599E|MSLN_uc002cju.1_Missense_Mutation_p.G599E|MSLN_uc010brd.1_Missense_Mutation_p.G598E|MSLN_uc002cjv.1_Intron|MSLN_uc002cjx.1_Missense_Mutation_p.G599E|MSLN_uc002cjy.1_Silent_p.G291G|MIR662_hsa-mir-662|MI0003670_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	607					cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				GCCCTCTCGGGGACGCCCTGC	0.711													10	50					0	0	1	0	0
MSLNL	401827	broad.mit.edu	37	16	819602	819602	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:819602G>A	uc002cjz.1	-	16	2988	c.2988C>T	c.(2986-2988)CCC>CCT	p.P996P	MIR662_hsa-mir-662|MI0003670_5'Flank	NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	645	Helical; (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						CCATCGCCAGGGGCAGGTACC	0.652													10	22					0	0	1	0	0
MSLNL	401827	broad.mit.edu	37	16	825075	825075	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:825075C>T	uc002cjz.1	-	7	1497	c.1497G>A	c.(1495-1497)CGG>CGA	p.R499R		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				breast(3)|ovary(1)	4						CTCCAATGCACCGGGCCCATC	0.761													6	18					0	0	1	0	0
MSLNL	401827	broad.mit.edu	37	16	825636	825636	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:825636C>T	uc002cjz.1	-	5	1125	c.1125G>A	c.(1123-1125)GGG>GGA	p.G375G		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				breast(3)|ovary(1)	4						TCGGGTCATCCCCACGGCCAC	0.716													17	13					0	0	1	0	0
CHTF18	63922	broad.mit.edu	37	16	839621	839621	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:839621C>T	uc002cke.3	+	4	575	c.512C>T	c.(511-513)CCC>CTC	p.P171L	RPUSD1_uc002cka.2_5'Flank|RPUSD1_uc002ckb.2_5'Flank|RPUSD1_uc002ckc.2_5'Flank|RPUSD1_uc002ckd.2_5'Flank|CHTF18_uc010uus.1_Missense_Mutation_p.P171L|CHTF18_uc010bre.1_RNA|CHTF18_uc002ckf.3_Missense_Mutation_p.P199L|CHTF18_uc010brf.2_5'UTR|CHTF18_uc002ckg.3_5'UTR	NM_022092	NP_071375	Q8WVB6	CTF18_HUMAN	CTF18, chromosome transmission fidelity factor	171					cell cycle|DNA replication	nucleus	ATP binding|DNA binding|nucleoside-triphosphatase activity			kidney(1)	1		Hepatocellular(780;0.00335)				CTGAGGCGGCCCCCCATCTTG	0.677													22	54					0	0	1	0	0
LMF1	64788	broad.mit.edu	37	16	921174	921174	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:921174G>A	uc002ckj.2	-	7	1069	c.1065C>T	c.(1063-1065)CCC>CCT	p.P355P	LMF1_uc010brg.2_5'Flank|LMF1_uc010brh.2_Silent_p.P138P|LMF1_uc010bri.2_Silent_p.P118P|LMF1_uc002ckk.2_Silent_p.P138P	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	355	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				ATCTGGGCTCGGGCCGGGCCC	0.667													3	4					0	0	1	0	0
LMF1	64788	broad.mit.edu	37	16	921181	921181	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:921181G>A	uc002ckj.2	-	7	1062	c.1058C>T	c.(1057-1059)GCC>GTC	p.A353V	LMF1_uc010brg.2_5'Flank|LMF1_uc010brh.2_Missense_Mutation_p.A136V|LMF1_uc010bri.2_Missense_Mutation_p.A116V|LMF1_uc002ckk.2_Missense_Mutation_p.A136V	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	353	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				CTCGGGCCGGGCCCCTCGGAT	0.672													3	3					0	0	1	0	0
LMF1	64788	broad.mit.edu	37	16	961030	961030	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:961030G>A	uc002ckj.2	-	4	568	c.564C>T	c.(562-564)TGC>TGT	p.C188C	LMF1_uc010brh.2_5'UTR|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_5'UTR|LMF1_uc010uuu.1_RNA|LMF1_uc010uuv.1_RNA	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	188	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				TCCACAGAGGGCACAGGAAGA	0.557													12	27					0	0	1	0	0
SSTR5	6755	broad.mit.edu	37	16	1129702	1129702	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1129702G>A	uc002ckq.2	+	1	922	c.834G>A	c.(832-834)CAG>CAA	p.Q278Q	LOC146336_uc002cko.2_5'Flank|LOC146336_uc002ckp.1_5'Flank	NM_001053	NP_001044	P35346	SSR5_HUMAN	somatostatin receptor 5	278	Extracellular (Potential).				negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			lung(1)	1		Hepatocellular(780;0.00369)			Octreotide(DB00104)	CGCTGCCCCAGGAGCCCGCCT	0.622													15	63					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1248754	1248754	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1248754C>T	uc002cks.2	+	6	1031	c.783C>T	c.(781-783)TTC>TTT	p.F261F	CACNA1H_uc002ckt.2_Silent_p.F261F	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	261	Extracellular (Potential).|I.				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	ACCGCTGCTTCCTGGACAGTG	0.567													5	22					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1254125	1254125	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1254125C>T	uc002cks.2	+	10	2366	c.2118C>T	c.(2116-2118)GCC>GCT	p.A706A	CACNA1H_uc002ckt.2_Silent_p.A706A	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	706	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GCACCCGTGCCCTGGAGGACC	0.672													4	14					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1258015	1258015	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1258015C>T	uc002cks.2	+	16	3405	c.3157C>T	c.(3157-3159)CTG>TTG	p.L1053L	CACNA1H_uc002ckt.2_Silent_p.L1053L|CACNA1H_uc002cku.2_5'Flank|CACNA1H_uc010brj.2_5'Flank|CACNA1H_uc002ckv.2_5'Flank	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	1053	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TCCCGCAGAGCTGAAGATGTG	0.667													5	9					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1260591	1260591	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1260591C>T	uc002cks.2	+	20	4226	c.3978C>T	c.(3976-3978)GTC>GTT	p.V1326V	CACNA1H_uc002ckt.2_Silent_p.V1326V|CACNA1H_uc002cku.2_Silent_p.V32V|CACNA1H_uc010brj.2_Silent_p.V32V|CACNA1H_uc002ckv.2_Silent_p.V32V	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	1326	Extracellular (Potential).|III.				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	AGGAGCGGGTCTTCCTCAGCG	0.667													7	28					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1262101	1262101	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1262101G>A	uc002cks.2	+	25	4970	c.4722G>A	c.(4720-4722)GAG>GAA	p.E1574E	CACNA1H_uc002ckt.2_Silent_p.E1574E|CACNA1H_uc002cku.2_Silent_p.E280E|CACNA1H_uc010brj.2_Silent_p.E280E|CACNA1H_uc002ckv.2_Silent_p.E280E	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	1574	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GGCGGCGAGAGGAGAAGCGGC	0.692													13	82					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270553	1270553	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1270553C>T	uc002cks.2	+	35	6869	c.6621C>T	c.(6619-6621)TCC>TCT	p.S2207S	CACNA1H_uc002ckt.2_Silent_p.S2201S|CACNA1H_uc002cku.2_Silent_p.S902S|CACNA1H_uc010brj.2_Silent_p.S918S|CACNA1H_uc002ckv.2_Silent_p.S896S	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2207	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	CGCGGCCCTCCGCGGCAGAGG	0.716													18	26					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270770	1270770	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1270770C>T	uc002cks.2	+	35	7086	c.6838C>T	c.(6838-6840)CCT>TCT	p.P2280S	CACNA1H_uc002ckt.2_Missense_Mutation_p.P2274S|CACNA1H_uc002cku.2_Missense_Mutation_p.P975S|CACNA1H_uc010brj.2_Missense_Mutation_p.P991S|CACNA1H_uc002ckv.2_Missense_Mutation_p.P969S	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2280	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	CAGTGGAGACCCTTTCTTGGA	0.652													23	62					0	0	1	0	0
TPSG1	25823	broad.mit.edu	37	16	1272059	1272059	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1272059C>T	uc002ckw.2	-	6	697	c.695G>A	c.(694-696)GGT>GAT	p.G232D		NM_012467	NP_036599	Q9NRR2	TRYG1_HUMAN	transmembrane tryptase preproprotein	232	Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				CACCCAGGCACCGTTCACCTG	0.667													17	41					0	0	1	0	0
TPSB2	64499	broad.mit.edu	37	16	1279235	1279235	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1279235C>T	uc002cky.2	-	5	478	c.455G>A	c.(454-456)GGG>GAG	p.G152E	TPSB2_uc010brk.1_RNA|TPSB2_uc002ckx.2_5'UTR	NM_024164	NP_077078	P20231	TRYB2_HUMAN	tryptase beta 2 precursor	152	Peptidase S1.				proteolysis	extracellular region	protein binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				GCACGGCATCCCCGGGGGGGA	0.682													6	9					0	0	1	0	0
TPSB2	64499	broad.mit.edu	37	16	1279691	1279691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1279691C>T	uc002cky.2	-	3	132	c.109G>A	c.(109-111)GCC>ACC	p.A37T	TPSB2_uc010brk.1_RNA|TPSB2_uc002ckx.2_5'UTR	NM_024164	NP_077078	P20231	TRYB2_HUMAN	tryptase beta 2 precursor	37	Peptidase S1.				proteolysis	extracellular region	protein binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				CTCCTGGGGGCCTCCTGACCC	0.701													14	56					0	0	1	0	0
BAIAP3	8938	broad.mit.edu	37	16	1389508	1389508	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1389508C>T	uc002clk.1	+	5	417	c.417C>T	c.(415-417)CTC>CTT	p.L139L	BAIAP3_uc002clj.2_Silent_p.L121L|BAIAP3_uc010uuz.1_Silent_p.L104L|BAIAP3_uc010uva.1_Intron|BAIAP3_uc010uvb.1_Silent_p.L156L|BAIAP3_uc010uvc.1_Silent_p.L104L	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	139					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				TGGAGATGCTCTACGAGGAGG	0.682													7	13					0	0	1	0	0
BAIAP3	8938	broad.mit.edu	37	16	1395328	1395328	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1395328G>A	uc002clk.1	+	22	2124	c.2124G>A	c.(2122-2124)AGG>AGA	p.R708R	BAIAP3_uc002clj.2_Silent_p.R690R|BAIAP3_uc010uuz.1_Silent_p.R673R|BAIAP3_uc010uva.1_Silent_p.R645R|BAIAP3_uc010uvc.1_Silent_p.R637R	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	708	MHD1.				G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				AAGTGCTGAGGGACCAGGCCA	0.622													21	32					0	0	1	0	0
PTX4	390667	broad.mit.edu	37	16	1536177	1536177	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1536177G>A	uc010uvf.1	-	3	1185	c.1185C>T	c.(1183-1185)TCC>TCT	p.S395S		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	400	Pentaxin.					extracellular region	metal ion binding				0						CCAGCACGAGGGACCCTCCGG	0.682													14	35					0	0	1	0	0
PTX4	390667	broad.mit.edu	37	16	1537698	1537698	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1537698C>T	uc010uvf.1	-	2	400	c.400G>A	c.(400-402)GAA>AAA	p.E134K		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	139						extracellular region	metal ion binding				0						GCCTTCCTTTCCCGGGCCCGC	0.706													18	40					0	0	1	0	0
TELO2	9894	broad.mit.edu	37	16	1556972	1556972	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1556972C>T	uc002cly.2	+	18	2437	c.2146C>T	c.(2146-2148)CTC>TTC	p.L716F		NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	716						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				GACCTTCGACCTCTTGGGAGA	0.657													4	26					0	0	1	0	0
IFT140	9742	broad.mit.edu	37	16	1634338	1634338	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1634338G>A	uc002cmb.2	-	11	1601	c.1239C>T	c.(1237-1239)TTC>TTT	p.F413F	IFT140_uc002clz.2_Silent_p.F64F	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	413										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				CTTGCTGGTGGAAGTGTGACG	0.607													6	13					0	0	1	0	0
IFT140	9742	broad.mit.edu	37	16	1657262	1657262	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1657262G>A	uc002cmb.2	-	3	368	c.6C>T	c.(4-6)GCC>GCT	p.A2A		NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	2										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				CATAATAGAGGGCCATGACGG	0.468													27	80					0	0	1	0	0
NUBP2	10101	broad.mit.edu	37	16	1838710	1838710	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1838710C>T	uc002cmw.3	+	7	900	c.811C>T	c.(811-813)CCC>TCC	p.P271S	NUBP2_uc002cmx.3_Missense_Mutation_p.P130S|NUBP2_uc010brx.2_Missense_Mutation_p.P211S	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	271						microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						CGCGTGCCTCCCCTGACTAAG	0.662													5	23					0	0	1	0	0
IGFALS	3483	broad.mit.edu	37	16	1841107	1841107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1841107C>T	uc002cmy.2	-	2	1393	c.1312G>A	c.(1312-1314)GAG>AAG	p.E438K	IGFALS_uc010uvn.1_Missense_Mutation_p.E476K|IGFALS_uc010uvo.1_Missense_Mutation_p.E72K	NM_004970	NP_004961	P35858	ALS_HUMAN	insulin-like growth factor binding protein, acid	438	LRR 16.				cell adhesion|signal transduction	soluble fraction	insulin-like growth factor binding				0						AGGTCGAGCTCCAGCAGCTCC	0.682													3	20					0	0	1	0	0
HS3ST6	64711	broad.mit.edu	37	16	1962130	1962130	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:1962130G>A	uc002cnf.2	-	2	397	c.397C>T	c.(397-399)CCC>TCC	p.P133S		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	133											0						ATGCGGCGGGGGGCCTCTCGC	0.662													9	9					0	0	1	0	0
TBL3	10607	broad.mit.edu	37	16	2024083	2024083	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2024083C>T	uc002cnu.1	+	2	170	c.68C>T	c.(67-69)CCT>CTT	p.P23L	TBL3_uc002cnv.1_5'UTR|TBL3_uc010bsb.1_5'Flank|TBL3_uc010bsc.1_5'Flank|TBL3_uc010uvt.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	23					G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						AAAATTGAGCCTTTCTACAAG	0.652													8	34					0	0	1	0	0
TBL3	10607	broad.mit.edu	37	16	2025692	2025692	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2025692C>T	uc002cnu.1	+	10	1070	c.968C>T	c.(967-969)TCC>TTC	p.S323F	TBL3_uc002cnv.1_Missense_Mutation_p.S209F|TBL3_uc010bsb.1_Missense_Mutation_p.S112F|TBL3_uc010bsc.1_Missense_Mutation_p.S209F|TBL3_uc010uvt.1_5'UTR|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	323	WD 6.				G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						GAGGCTCGCTCCCTGCGGCTG	0.667													11	44					0	0	1	0	0
TBL3	10607	broad.mit.edu	37	16	2026061	2026061	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2026061C>T	uc002cnu.1	+	12	1236	c.1134C>T	c.(1132-1134)ATC>ATT	p.I378I	TBL3_uc002cnv.1_Silent_p.I264I|TBL3_uc010bsb.1_Silent_p.I167I|TBL3_uc010bsc.1_Silent_p.I264I|TBL3_uc010uvt.1_5'UTR|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	378	WD 8.				G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						TCTCAGATATCGTCCTGGCCC	0.642													50	116					0	0	1	0	0
SYNGR3	9143	broad.mit.edu	37	16	2042728	2042728	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2042728G>A	uc002cod.2	+	3	565	c.429G>A	c.(427-429)GGG>GGA	p.G143G		NM_004209	NP_004200	O43761	SNG3_HUMAN	synaptogyrin 3	143	MARVEL.				positive regulation of transporter activity	cell junction|integral to plasma membrane|synaptic vesicle					0						CGCAGGCGGGGGACGCGGCGC	0.716													7	7					0	0	1	0	0
ZNF598	90850	broad.mit.edu	37	16	2049525	2049525	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2049525G>A	uc002cof.1	-	11	2040	c.2025C>T	c.(2023-2025)CCC>CCT	p.P675P	ZNF598_uc002coe.1_Silent_p.P39P	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	675	Pro-rich.					intracellular	zinc ion binding			lung(1)|breast(1)	2						GGGGTGGGCAGGGGCCGCCGA	0.751													4	13					0	0	1	0	0
TSC2	7249	broad.mit.edu	37	16	2129298	2129298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2129298C>T	uc002con.2	+	28	3259	c.3153C>T	c.(3151-3153)CTC>CTT	p.L1051L	TSC2_uc010bsd.2_Silent_p.L1051L|TSC2_uc002coo.2_Silent_p.L1007L|TSC2_uc010uvv.1_Silent_p.L971L|TSC2_uc010uvw.1_Silent_p.L959L|TSC2_uc002cop.2_Silent_p.L807L	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	1051					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				GCGAGTTCCTCCTAGCGGGTG	0.637			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				28	45					0	0	1	0	0
TSC2	7249	broad.mit.edu	37	16	2138110	2138110	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2138110C>T	uc002con.2	+	40	5236	c.5130C>T	c.(5128-5130)TTC>TTT	p.F1710F	TSC2_uc010bsd.2_Silent_p.F1687F|TSC2_uc002coo.2_Silent_p.F1643F|TSC2_uc010uvv.1_Silent_p.F1607F|TSC2_uc010uvw.1_Silent_p.F1595F|TSC2_uc002cop.2_Silent_p.F1466F|TSC2_uc002coq.2_Silent_p.F485F|TSC2_uc002cor.2_Silent_p.F411F	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	1710	Rap-GAP.				cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				ACCTGCCCTTCGTGGCCCGCC	0.652			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				18	96					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2150448	2150448	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2150448G>A	uc002cos.1	-	27	9726	c.9517C>T	c.(9517-9519)CCG>TCG	p.P3173S	PKD1_uc002cot.1_Missense_Mutation_p.P3173S|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	3173	PLAT.|Cytoplasmic (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AGGCTGTGCGGGGTGGCGATC	0.652													7	72					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2153339	2153339	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2153339C>A	uc002cos.1	-	23	8928	c.8719G>T	c.(8719-8721)GCT>TCT	p.A2907S	PKD1_uc002cot.1_Missense_Mutation_p.A2907S|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2907	Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GTGACCACAGCACCGACGGAG	0.692													15	91					1.2644e-06	1.26681e-06	1	1	0
PKD1	5310	broad.mit.edu	37	16	2164218	2164218	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2164218G>A	uc002cos.1	-	11	3015	c.2806C>T	c.(2806-2808)CGC>TGC	p.R936C	PKD1_uc002cot.1_Missense_Mutation_p.R936C	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	936	Extracellular (Potential).|PKD 4.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GGCGTGGCGCGGAGGCCACAG	0.697													9	30					0	0	1	0	0
TRAF7	84231	broad.mit.edu	37	16	2222201	2222201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2222201C>T	uc002cow.2	+	8	584	c.485C>T	c.(484-486)CCC>CTC	p.P162L		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	162	RING-type.				activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						GAGAAGTGTCCCGTGGACAAC	0.652													5	22					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2336706	2336706	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2336706G>A	uc002cpy.1	-	22	3979	c.3267C>T	c.(3265-3267)GAC>GAT	p.D1089D	ABCA3_uc010bsk.1_Silent_p.D1031D	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	1089					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CGTTAAACTGGTCCTTGGCAG	0.632													16	55					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2350132	2350132	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2350132C>T	uc002cpy.1	-	13	2197	c.1485G>A	c.(1483-1485)GGG>GGA	p.G495G	ABCA3_uc010bsk.1_Silent_p.G437G|ABCA3_uc010bsl.1_Silent_p.G495G	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	495					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CCCTTGGCTTCCCACACCAAT	0.547													42	83					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2367709	2367709	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2367709G>A	uc002cpy.1	-	9	1642	c.930C>T	c.(928-930)CTC>CTT	p.L310L	ABCA3_uc010bsk.1_Silent_p.L310L|ABCA3_uc010bsl.1_Silent_p.L310L	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	310	Helical; (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GGAAGAACAAGAGGAACCAGG	0.627													6	69					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2376115	2376115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2376115G>A	uc002cpy.1	-	5	927	c.215C>T	c.(214-216)CCT>CTT	p.P72L	ABCA3_uc010bsk.1_Missense_Mutation_p.P72L|ABCA3_uc010bsl.1_Missense_Mutation_p.P72L|ABCA3_uc002cpz.1_Missense_Mutation_p.P72L	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	72					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				TCCTGGCGGAGGGAAGGTGAA	0.577													10	50					0	0	1	0	0
CCNF	899	broad.mit.edu	37	16	2498891	2498891	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2498891C>T	uc002cqd.1	+	11	1218	c.1130C>T	c.(1129-1131)GCC>GTC	p.A377V	CCNF_uc002cqe.1_Missense_Mutation_p.A69V	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	377	Cyclin N-terminal.				cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				ATCCGGGAGGCCGTATGGCTC	0.587													34	110					0	0	1	0	0
C16orf59	80178	broad.mit.edu	37	16	2511789	2511789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2511789C>T	uc002cqh.2	+	5	678	c.647C>T	c.(646-648)TCC>TTC	p.S216F	C16orf59_uc002cqf.1_Missense_Mutation_p.S216F|C16orf59_uc002cqg.1_Missense_Mutation_p.S49F|C16orf59_uc002cqi.2_Missense_Mutation_p.S49F|C16orf59_uc010uwb.1_Missense_Mutation_p.S49F	NM_025108	NP_079384	Q7L2K0	CP059_HUMAN	hypothetical protein LOC80178	216											0		Ovarian(90;0.17)				AAAGCAGCTTCCCAGAACTCG	0.612													16	79					0	0	1	0	0
TBC1D24	57465	broad.mit.edu	37	16	2546536	2546536	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2546536C>T	uc002cql.2	+	2	527	c.387C>T	c.(385-387)TCC>TCT	p.S129S	TBC1D24_uc002cqk.2_Silent_p.S129S|TBC1D24_uc002cqm.2_Silent_p.S129S|TBC1D24_uc010bsm.2_5'Flank	NM_020705	NP_065756	Q9ULP9	TBC24_HUMAN	TBC1 domain family, member 24	129	Rab-GAP TBC.				neuron projection development	cytoplasm	protein binding|Rab GTPase activator activity				0						CCGACATCTCCTTCTGCCCCG	0.667													21	45					0	0	1	0	0
TBC1D24	57465	broad.mit.edu	37	16	2546846	2546846	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2546846C>T	uc002cql.2	+	2	837	c.697C>T	c.(697-699)CTG>TTG	p.L233L	TBC1D24_uc002cqk.2_Silent_p.L233L|TBC1D24_uc002cqm.2_Silent_p.L233L|TBC1D24_uc010bsm.2_5'Flank	NM_020705	NP_065756	Q9ULP9	TBC24_HUMAN	TBC1 domain family, member 24	233	Rab-GAP TBC.				neuron projection development	cytoplasm	protein binding|Rab GTPase activator activity				0						TGACGTCTTCCTGGTGGAGGG	0.642													12	51					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2812786	2812786	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2812786C>T	uc002crk.2	+	11	2806	c.2257C>T	c.(2257-2259)CGC>TGC	p.R753C	SRRM2_uc002crj.1_Missense_Mutation_p.R657C|SRRM2_uc002crl.1_Missense_Mutation_p.R753C|SRRM2_uc010bsu.1_Missense_Mutation_p.R657C	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	753	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GAAGAAATCTCGCATTTCTTC	0.488													37	112					0	0	1	0	0
ZG16B	124220	broad.mit.edu	37	16	2880270	2880270	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2880270G>A	uc002cru.2	+	1	98	c.22G>A	c.(22-24)GAG>AAG	p.E8K		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	8						extracellular region	sugar binding			ovary(1)	1						GGGGGCCCAGGAGAGTATAAA	0.677													8	14					0	0	1	0	0
PRSS22	64063	broad.mit.edu	37	16	2903927	2903927	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2903927C>T	uc002cry.1	-	5	722	c.656G>A	c.(655-657)GGA>GAA	p.G219E	PRSS22_uc002crz.1_Missense_Mutation_p.G109E	NM_022119	NP_071402	Q9GZN4	BSSP4_HUMAN	protease, serine, 22 precursor	219	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1						AGTGATGGGTCCCTGTCCTGC	0.637													20	48					0	0	1	0	0
FLYWCH2	114984	broad.mit.edu	37	16	2946512	2946512	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2946512C>T	uc002csa.2	+	3	433	c.62C>T	c.(61-63)TCC>TTC	p.S21F	FLYWCH2_uc010uwj.1_Missense_Mutation_p.S21F|FLYWCH2_uc010uwk.1_Missense_Mutation_p.S21F	NM_138439	NP_612448	Q96CP2	FWCH2_HUMAN	FLYWCH family member 2	21											0						CAGGAGCCATCCCCCAAGCCA	0.652													15	82					0	0	1	0	0
FLYWCH1	84256	broad.mit.edu	37	16	2988351	2988351	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:2988351C>T	uc002csd.2	+	8	2307	c.1944C>T	c.(1942-1944)CAC>CAT	p.H648H	FLYWCH1_uc002csb.2_Silent_p.H647H|FLYWCH1_uc002csc.2_Silent_p.H647H|FLYWCH1_uc010bsv.2_Silent_p.H372H|FLYWCH1_uc002cse.2_Silent_p.H103H	NM_032296	NP_115672	Q4VC44	FWCH1_HUMAN	FLYWCH-type zinc finger 1 isoform a	648	FLYWCH-type 5.					nucleus	DNA binding|metal ion binding				0						CCCAGGGCCACCGCATCATGG	0.682													8	17					0	0	1	0	0
CLDN6	9074	broad.mit.edu	37	16	3065685	3065685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3065685G>A	uc002csu.3	-	2	398	c.338C>T	c.(337-339)TCC>TTC	p.S113F		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	113	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GCGGGCCTTGGAATCCTTCTC	0.612													15	44					0	0	1	0	0
CLDN6	9074	broad.mit.edu	37	16	3065728	3065728	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3065728G>A	uc002csu.3	-	2	355	c.295C>T	c.(295-297)CTT>TTT	p.L99F		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	99	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GCCCCAGCAAGGTAGACCAGC	0.612													16	45					0	0	1	0	0
THOC6	79228	broad.mit.edu	37	16	3077236	3077236	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3077236C>T	uc002ctb.2	+	11	1061	c.765C>T	c.(763-765)TTC>TTT	p.F255F	HCFC1R1_uc002csx.1_5'Flank|HCFC1R1_uc002csy.1_5'Flank|HCFC1R1_uc002csz.1_5'Flank|THOC6_uc002ctd.2_Silent_p.F255F|THOC6_uc002ctc.2_Silent_p.F231F|THOC6_uc002cta.2_Silent_p.F231F	NM_024339	NP_077315	Q86W42	THOC6_HUMAN	WD repeat domain 58 isoform 1	255					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	RNA binding			ovary(1)|central_nervous_system(1)	2						CCACCATCTTCCCCATCCGGG	0.632													25	93					0	0	1	0	0
CCDC64B	146439	broad.mit.edu	37	16	3080783	3080783	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3080783C>T	uc002ctf.3	-	3	574	c.529G>A	c.(529-531)GAA>AAA	p.E177K	CCDC64B_uc002cte.3_5'UTR|CCDC64B_uc010bta.1_Silent_p.G76G	NM_001103175	NP_001096645	A1A5D9	BICR2_HUMAN	coiled-coil domain containing 64B	177	Potential.										0						GCGTCCAGTTCCCTCTGAAGT	0.642													4	12					0	0	1	0	0
MMP25	64386	broad.mit.edu	37	16	3108551	3108551	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3108551G>A	uc002cth.2	+	9	1535	c.1298G>A	c.(1297-1299)GGC>GAC	p.G433D	uc002ctj.1_Intron	NM_022468	NP_071913	Q9NPA2	MMP25_HUMAN	matrix metalloproteinase 25 preproprotein	433	Hemopexin-like 3.				inflammatory response|proteolysis	anchored to membrane|cell surface|plasma membrane|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0						CTGGTCCGCGGCCGGCAGTAC	0.751													5	10					0	0	1	0	0
IL32	9235	broad.mit.edu	37	16	3119355	3119355	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3119355G>A	uc002cto.2	+	6	915	c.704G>A	c.(703-705)TGA>TAA	p.*235*	IL32_uc002ctk.2_Silent_p.*132*|IL32_uc010uwp.1_Silent_p.*169*|IL32_uc010btb.2_Silent_p.*179*|IL32_uc002ctl.2_Silent_p.*189*|IL32_uc002ctm.2_Silent_p.*189*|IL32_uc002ctn.2_Silent_p.*189*|IL32_uc002cts.3_Silent_p.*189*|IL32_uc002ctp.2_Silent_p.*169*|IL32_uc002ctq.2_Silent_p.*235*|IL32_uc002ctr.2_Silent_p.*169*|IL32_uc002ctt.2_Silent_p.*189*|IL32_uc010uwr.1_Silent_p.*149*|IL32_uc002ctu.2_Silent_p.*180*	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	235					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						TCCTCAAAATGAAGATACTGA	0.617													20	186					0	0	1	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3139136	3139136	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3139136G>A	uc002ctv.1	-	5	2222	c.2134C>T	c.(2134-2136)CTG>TTG	p.L712L	ZSCAN10_uc002cty.1_Silent_p.L373L|ZSCAN10_uc002ctw.1_Silent_p.L630L|ZSCAN10_uc002ctx.1_Silent_p.L640L	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	712	C2H2-type 14.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TGGCGCAGCAGGTGGGAGTTG	0.711													5	10					0	0	1	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3139548	3139548	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3139548C>T	uc002ctv.1	-	5	1810	c.1722G>A	c.(1720-1722)ACG>ACA	p.T574T	ZSCAN10_uc002cty.1_Silent_p.T235T|ZSCAN10_uc002ctw.1_Silent_p.T492T|ZSCAN10_uc002ctx.1_Silent_p.T502T	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	574					negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GCTTCTCGCCCGTGTGGCTGC	0.711													3	10					0	0	1	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3142167	3142167	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3142167G>A	uc002ctv.1	-	2	470	c.382C>T	c.(382-384)CGA>TGA	p.R128*	ZSCAN10_uc002cty.1_5'UTR|ZSCAN10_uc002ctw.1_Intron|ZSCAN10_uc002ctx.1_Nonsense_Mutation_p.R56*	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	128	Pro-rich.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGCTGGGGTCGGGGAGGCTCA	0.652													15	39					0	0	1	0	0
OR1F1	4992	broad.mit.edu	37	16	3255061	3255061	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3255061C>T	uc010uwu.1	+	1	815	c.815C>T	c.(814-816)ACT>ATT	p.T272I		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	272	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GAGAAAGACACTATGGCTACT	0.468													40	144					0	0	1	0	0
OR1F2P	26184	broad.mit.edu	37	16	3266304	3266304	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3266304G>A	uc010uwv.1	+	1	743	c.595G>A	c.(595-597)GGA>AGA	p.G199R		NR_002169				RecName: Full=Olfactory receptor 1F2; AltName: Full=OLFmf2;												0						ATCCACAAAGGGAAGATGGAA	0.522													15	43					0	0	1	0	0
OR1F2P	26184	broad.mit.edu	37	16	3266308	3266308	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3266308G>A	uc010uwv.1	+	1	747	c.599G>A	c.(598-600)AGA>AAA	p.R200K		NR_002169				RecName: Full=Olfactory receptor 1F2; AltName: Full=OLFmf2;												0						ACAAAGGGAAGATGGAAAGCC	0.527													15	43					0	0	1	0	0
ZNF200	7752	broad.mit.edu	37	16	3274129	3274129	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3274129G>A	uc002cuj.2	-	5	1583	c.951C>T	c.(949-951)TTC>TTT	p.F317F	ZNF200_uc002cum.3_Silent_p.F316F|ZNF200_uc010bti.2_Silent_p.F316F|ZNF200_uc002cuk.2_Silent_p.F317F|ZNF200_uc002cui.2_Silent_p.F316F|ZNF200_uc002cul.3_Silent_p.F316F	NM_003454	NP_003445	P98182	ZN200_HUMAN	zinc finger protein 200 isoform 1	317	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AATTCTGACGGAAGTTTTTTC	0.393													118	81					0	0	1	0	0
ZNF200	7752	broad.mit.edu	37	16	3274282	3274282	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3274282G>A	uc002cuj.2	-	5	1430	c.798C>T	c.(796-798)TAC>TAT	p.Y266Y	ZNF200_uc002cum.3_Silent_p.Y265Y|ZNF200_uc010bti.2_Silent_p.Y265Y|ZNF200_uc002cuk.2_Silent_p.Y266Y|ZNF200_uc002cui.2_Silent_p.Y265Y|ZNF200_uc002cul.3_Silent_p.Y265Y	NM_003454	NP_003445	P98182	ZN200_HUMAN	zinc finger protein 200 isoform 1	266	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						GGGAAATGAGGTAAGAACTTT	0.408													30	49					0	0	1	0	0
ZNF200	7752	broad.mit.edu	37	16	3274511	3274511	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3274511G>A	uc002cuj.2	-	5	1201	c.569C>T	c.(568-570)TCC>TTC	p.S190F	ZNF200_uc002cum.3_Missense_Mutation_p.S189F|ZNF200_uc010bti.2_Missense_Mutation_p.S189F|ZNF200_uc002cuk.2_Missense_Mutation_p.S190F|ZNF200_uc002cui.2_Missense_Mutation_p.S189F|ZNF200_uc002cul.3_Missense_Mutation_p.S189F	NM_003454	NP_003445	P98182	ZN200_HUMAN	zinc finger protein 200 isoform 1	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AGAGACCAAGGAAGAATCCAT	0.398													33	60					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3293298	3293298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3293298G>A	uc002cun.1	-	10	2229	c.2189C>T	c.(2188-2190)TCC>TTC	p.S730F		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	730	B30.2/SPRY.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	ATTGTAAAAGGAGATGCTTCC	0.542													24	106					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3304454	3304454	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3304454C>T	uc002cun.1	-	2	654	c.614G>A	c.(613-615)AGA>AAA	p.R205K		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	205					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	GCTGGCGTTTCTGCGCAGCCG	0.756													10	21					0	0	1	0	0
ZNF174	7727	broad.mit.edu	37	16	3454458	3454458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3454458C>T	uc002cvc.2	+	2	1250	c.435C>T	c.(433-435)CTC>CTT	p.L145L	ZNF174_uc002cva.2_Silent_p.L145L|ZNF174_uc002cvb.2_Silent_p.L145L	NM_003450	NP_003441	Q15697	ZN174_HUMAN	zinc finger protein 174 isoform a	145					negative regulation of transcription from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|cytoplasm|nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0						AAAAGGTGCTCTTGGAGAAAA	0.512													58	107					0	0	1	0	0
ZNF174	7727	broad.mit.edu	37	16	3454615	3454615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3454615C>T	uc002cvc.2	+	2	1407	c.592C>T	c.(592-594)CTC>TTC	p.L198F	ZNF174_uc002cva.2_Missense_Mutation_p.L198F|ZNF174_uc002cvb.2_Missense_Mutation_p.L198F	NM_003450	NP_003441	Q15697	ZN174_HUMAN	zinc finger protein 174 isoform a	198					negative regulation of transcription from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|cytoplasm|nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0						ATCCCCACTCCTCCAAGAACC	0.532													23	95					0	0	1	0	0
ZNF597	146434	broad.mit.edu	37	16	3486680	3486680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3486680G>A	uc002cvd.2	-	4	1203	c.1019C>T	c.(1018-1020)CCC>CTC	p.P340L		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	340					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						acactgtaagggcttgaattt	0.294													11	17					0	0	1	0	0
ZNF597	146434	broad.mit.edu	37	16	3486894	3486894	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3486894C>T	uc002cvd.2	-	4	989	c.805G>A	c.(805-807)GAA>AAA	p.E269K		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	269					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTAGTAGATTCGTAGGTGTTT	0.433													30	138					0	0	1	0	0
ZNF597	146434	broad.mit.edu	37	16	3487274	3487274	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3487274G>A	uc002cvd.2	-	4	609	c.425C>T	c.(424-426)TCT>TTT	p.S142F		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	142					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAGAATTTCAGAAAGTGTGTT	0.408													32	127					0	0	1	0	0
NAT15	79903	broad.mit.edu	37	16	3533403	3533403	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3533403C>T	uc002cvh.3	+	6	624	c.378C>T	c.(376-378)ACC>ACT	p.T126T	NAT15_uc010uxb.1_Silent_p.T133T|NAT15_uc010btk.1_Silent_p.T61T|NAT15_uc010btl.2_Intron|NAT15_uc010btm.2_Silent_p.T126T|NAT15_uc010uxc.1_Silent_p.T126T|NAT15_uc010uxd.1_Intron|NAT15_uc010uxe.1_Intron|NAT15_uc002cvg.1_Silent_p.T126T	NM_001083601	NP_001077070	Q9H7X0	NAT15_HUMAN	N-acetyltransferase 15	126	N-acetyltransferase.						N-acetyltransferase activity				0						ACATATCAACCACCGCCCAGG	0.468													8	18					0	0	1	0	0
C16orf90	646174	broad.mit.edu	37	16	3544772	3544772	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3544772C>T	uc002cvi.2	-	2	152	c.152G>A	c.(151-153)GGA>GAA	p.G51E		NM_001080524	NP_001073993	A8MZG2	CP090_HUMAN	hypothetical protein LOC646174	41											0						GGGCTTGCTTCCCTGGGCACT	0.716													7	10					0	0	1	0	0
NLRC3	197358	broad.mit.edu	37	16	3607626	3607626	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3607626G>A	uc010btn.2	-	7	2478	c.2067C>T	c.(2065-2067)TCC>TCT	p.S689S	NLRC3_uc010bto.1_5'Flank	NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	689					I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TGACCAAGAGGGATCTGGCCA	0.498													6	22					0	0	1	0	0
NLRC3	197358	broad.mit.edu	37	16	3614464	3614464	+	Silent	SNP	G	A	A	rs150523532	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3614464G>A	uc010btn.2	-	5	885	c.474C>T	c.(472-474)TTC>TTT	p.F158F		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	158	NACHT.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						AGAGGCGGACGAAGTGCCTCA	0.657													10	32					0	0	1	0	0
NLRC3	197358	broad.mit.edu	37	16	3614674	3614674	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3614674G>A	uc010btn.2	-	5	675	c.264C>T	c.(262-264)GCC>GCT	p.A88A		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	88					I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GCAGGAGGGAGGCCAGCCTGT	0.706													4	16					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3632689	3632689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3632689G>A	uc002cvp.2	-	15	5786	c.5159C>T	c.(5158-5160)TCC>TTC	p.S1720F		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1720	Poly-Ser.|Interaction with PLK1 and TERF2-TERF2IP.|Interaction with SLX1.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CTCACAGGAGGAAGAACTGAA	0.592								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				4	25					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3633209	3633209	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3633209G>A	uc002cvp.2	-	14	5669	c.5042C>T	c.(5041-5043)TCG>TTG	p.S1681L		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1681	Interaction with PLK1 and TERF2-TERF2IP.|Interaction with SLX1.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CTTGGTGGGCGACCTGCTTGG	0.602								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				37	59					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3639790	3639790	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3639790G>A	uc002cvp.2	-	12	4476	c.3849C>T	c.(3847-3849)GCC>GCT	p.A1283A		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1283	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CCGCCTGCACGGCCAGCCCGC	0.632								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				41	81					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3640889	3640889	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3640889G>A	uc002cvp.2	-	12	3377	c.2750C>T	c.(2749-2751)GCC>GTC	p.A917V		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	917	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CCAGGTGGTGGCGGCCTCATC	0.652								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				29	117					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3645678	3645678	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3645678G>A	uc002cvp.2	-	9	2568	c.1941C>T	c.(1939-1941)CCC>CCT	p.P647P		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	647	Interaction with C20orf94, ERCC4 and MSH2.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						GAAGGCCGCCGGGCACCACGT	0.622								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				14	38					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3777936	3777936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3777936G>A	uc002cvv.2	-	31	7316	c.7112C>T	c.(7111-7113)CCT>CTT	p.P2371L	CREBBP_uc002cvw.2_Missense_Mutation_p.P2333L	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	2371					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GTGTGGCGAAGGCTGGGGCTG	0.642			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				10	90					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3790455	3790455	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3790455G>A	uc002cvv.2	-	24	4282	c.4078C>T	c.(4078-4080)CGA>TGA	p.R1360*	CREBBP_uc002cvw.2_Nonsense_Mutation_p.R1322*	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1360	Cys/His-rich.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding	p.R1360*(1)		haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GCCACCACTCGGACAAAAACC	0.582			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				7	65					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3795352	3795352	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:3795352G>A	uc002cvv.2	-	22	4044	c.3840C>T	c.(3838-3840)TTC>TTT	p.F1280F	CREBBP_uc002cvw.2_Silent_p.F1242F	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1280	Cys/His-rich.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TGCAATCAACGAAACTAGGAG	0.512			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				10	21					0	0	1	0	0
SRL	6345	broad.mit.edu	37	16	4242186	4242186	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4242186C>T	uc002cvz.3	-	6	1403	c.1390G>A	c.(1390-1392)GAA>AAA	p.E464K	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	923						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						TTTGGTGTTTCGCTACACCCT	0.557													64	114					0	0	1	0	0
SRL	6345	broad.mit.edu	37	16	4245738	4245738	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4245738C>T	uc002cvz.3	-	5	439	c.426G>A	c.(424-426)AAG>AAA	p.K142K	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	601						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						TGGTTTTCAGCTTAGGCCCAT	0.542													5	29					0	0	1	0	0
SRL	6345	broad.mit.edu	37	16	4247875	4247875	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4247875G>A	uc002cvz.3	-	4	314	c.301C>T	c.(301-303)CCG>TCG	p.P101S	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	560						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						ACACTCCACGGTCCCAGGAAC	0.423													27	45					0	0	1	0	0
TFAP4	7023	broad.mit.edu	37	16	4311934	4311934	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4311934G>A	uc010uxg.1	-	4	625	c.371C>T	c.(370-372)TCC>TTC	p.S124F		NM_003223	NP_003214	Q01664	TFAP4_HUMAN	transcription factor AP-4 (activating enhancer	124					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation by host of viral transcription|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|regulation of S phase of mitotic cell cycle	transcriptional repressor complex	E-box binding|histone deacetylase binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						TCGCTTGGGGGACGAGCCGCT	0.657											OREG0023575	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	17					0	0	1	0	0
DNAJA3	9093	broad.mit.edu	37	16	4491432	4491432	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4491432C>T	uc002cwk.2	+	4	511	c.486C>T	c.(484-486)TTC>TTT	p.F162F	DNAJA3_uc002cwl.2_Silent_p.F162F|DNAJA3_uc010uxk.1_Intron	NM_005147	NP_005138	Q96EY1	DNJA3_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 3	162					activation of caspase activity|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of cell proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein kinase activity|neuromuscular junction development|positive regulation of apoptosis|positive regulation of protein ubiquitination|protein folding|protein folding|protein stabilization|response to heat|response to interferon-gamma	cytosol|mitochondrial matrix|mitochondrial nucleoid|nucleus	ATP binding|heat shock protein binding|interferon-gamma receptor binding|metal ion binding|NF-kappaB binding|protein kinase binding			ovary(2)|breast(2)	4						CTGCAGGCTTCGATCCTGGGG	0.577													5	51					0	0	1	0	0
ANKS3	124401	broad.mit.edu	37	16	4776692	4776692	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4776692G>A	uc002cxj.1	-	5	754	c.459C>T	c.(457-459)TTC>TTT	p.F153F	ANKS3_uc002cxi.1_Silent_p.F80F|ANKS3_uc002cxk.2_Silent_p.F24F|ANKS3_uc002cxl.2_Intron|ANKS3_uc010uxs.1_Silent_p.F80F|ANKS3_uc002cxm.2_Intron	NM_133450	NP_597707	Q6ZW76	ANKS3_HUMAN	ankyrin repeat and sterile alpha motif domain	153	ANK 4.										0						TGTCCAAGAGGAACCTGACCA	0.552													27	44					0	0	1	0	0
C16orf71	146562	broad.mit.edu	37	16	4787833	4787833	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4787833C>T	uc002cxn.2	+	3	624	c.162C>T	c.(160-162)TTC>TTT	p.F54F		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	54										central_nervous_system(1)	1						TGTTCATCTTCCAGCGAAACC	0.597													27	66					0	0	1	0	0
C16orf71	146562	broad.mit.edu	37	16	4797517	4797517	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4797517G>A	uc002cxn.2	+	9	1916	c.1454G>A	c.(1453-1455)GGG>GAG	p.G485E		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	485										central_nervous_system(1)	1						TGTGCCAAGGGGCAGAGCGCC	0.672													11	34					0	0	1	0	0
SEPT12	124404	broad.mit.edu	37	16	4833673	4833673	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4833673C>T	uc002cxq.2	-	6	748	c.607G>A	c.(607-609)GAG>AAG	p.E203K	SEPT12_uc002cxr.2_Missense_Mutation_p.E157K|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	203	GTP (By similarity).				cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						GCCTCTCGCTCCTCCATGGTC	0.687													26	46					0	0	1	0	0
SEPT12	124404	broad.mit.edu	37	16	4834032	4834032	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4834032C>T	uc002cxq.2	-	5	553	c.412G>A	c.(412-414)GAG>AAG	p.E138K	SEPT12_uc002cxr.2_Intron|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	138					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						AGGTACTGCTCGTATTGCTCG	0.632													14	150					0	0	1	0	0
GLYR1	84656	broad.mit.edu	37	16	4861673	4861673	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4861673G>A	uc002cxx.3	-	14	1450	c.1413C>T	c.(1411-1413)ATC>ATT	p.I471I	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Silent_p.I385I|GLYR1_uc002cya.2_Silent_p.I465I|GLYR1_uc010uxv.1_Silent_p.I390I	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	471					pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						CCTGATTGAGGATGTCCAAGA	0.542													8	35					0	0	1	0	0
GLYR1	84656	broad.mit.edu	37	16	4881996	4881996	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4881996G>A	uc002cxx.3	-	5	558	c.521C>T	c.(520-522)CCC>CTC	p.P174L	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Missense_Mutation_p.P105L|GLYR1_uc002cya.2_Missense_Mutation_p.P174L|GLYR1_uc010uxv.1_Intron	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	174	A.T hook.				pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						ATCCTTTGGGGGCCGACCCCG	0.498													19	47					0	0	1	0	0
UBN1	29855	broad.mit.edu	37	16	4909091	4909091	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4909091C>T	uc002cyb.2	+	5	837	c.498C>T	c.(496-498)ACC>ACT	p.T166T	UBN1_uc010uxw.1_Silent_p.T166T|UBN1_uc002cyc.2_Silent_p.T166T	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	166	Sufficient for interaction with HIRA.				chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						ACTCGGGAACCCTGCAGTTTA	0.388													13	105					0	0	1	0	0
PPL	5493	broad.mit.edu	37	16	4933850	4933850	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4933850C>T	uc002cyd.1	-	22	4896	c.4806G>A	c.(4804-4806)GCG>GCA	p.A1602A		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1602	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						TCCCAGAGTCCGCCACGGTCA	0.577													29	56					0	0	1	0	0
PPL	5493	broad.mit.edu	37	16	4945269	4945269	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4945269C>T	uc002cyd.1	-	11	1325	c.1235G>A	c.(1234-1236)GGG>GAG	p.G412E		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	412	Spectrin 2.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						CACCTGCTCCCCCTCAAAGTC	0.488													15	46					0	0	1	0	0
PPL	5493	broad.mit.edu	37	16	4947742	4947743	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4947742_4947743CC>TT	uc002cyd.1	-	9	995_996	c.905_906GG>AA	c.(904-906)TGG>TAA	p.W302*		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	302	Potential.|Spectrin 1.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GGTACTCCTTCCAGTCTGCGTG	0.604													19	29					0	0	1	0	0
PPL	5493	broad.mit.edu	37	16	4950860	4950860	+	Missense_Mutation	SNP	C	T	T	rs149764746	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:4950860C>T	uc002cyd.1	-	6	667	c.577G>A	c.(577-579)GAA>AAA	p.E193K		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	193	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GCCCGGAGTTCGCTGTTCTGC	0.657													56	207					0	0	1	0	0
SEC14L5	9717	broad.mit.edu	37	16	5040786	5040786	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:5040786G>A	uc002cye.2	+	5	544	c.364G>A	c.(364-366)GAC>AAC	p.D122N		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	122	PRELI/MSF1.					integral to membrane|intracellular	transporter activity				0						TGAGAATGAAGACTGGACTTG	0.572													10	37					0	0	1	0	0
SEC14L5	9717	broad.mit.edu	37	16	5047039	5047039	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:5047039G>A	uc002cye.2	+	8	1144	c.964G>A	c.(964-966)GAC>AAC	p.D322N		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	322	CRAL-TRIO.					integral to membrane|intracellular	transporter activity				0						GCATTACCAGGACATAGGTGC	0.473													5	18					0	0	1	0	0
SEC14L5	9717	broad.mit.edu	37	16	5058617	5058617	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:5058617C>T	uc002cye.2	+	14	1948	c.1768C>T	c.(1768-1770)CCC>TCC	p.P590S		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	590	GOLD.					integral to membrane|intracellular	transporter activity				0						TGTGGAGGCTCCCCTTGTCTG	0.512													26	70					0	0	1	0	0
ALG1	56052	broad.mit.edu	37	16	5125427	5125427	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:5125427C>T	uc002cym.2	+	4	470	c.429C>T	c.(427-429)TTC>TTT	p.F143F	ALG1_uc002cyj.2_Silent_p.F32F|ALG1_uc002cyn.2_Silent_p.F143F|ALG1_uc010bue.2_Silent_p.F32F|ALG1_uc010uxy.1_Silent_p.F32F	NM_019109	NP_061982	Q9BT22	ALG1_HUMAN	beta-1,4-mannosyltransferase	143	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|lipopolysaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	chitobiosyldiphosphodolichol beta-mannosyltransferase activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(90;0.0164)				TCTGCTGGTTCGTGGGCTGCC	0.542													46	130					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7629892	7629892	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:7629892C>T	uc002cys.2	+	6	1372	c.384C>T	c.(382-384)TTC>TTT	p.F128F	A2BP1_uc010buf.1_Silent_p.F128F|A2BP1_uc002cyr.1_Silent_p.F127F|A2BP1_uc002cyt.2_Silent_p.F128F|A2BP1_uc010uxz.1_Silent_p.F171F|A2BP1_uc010uya.1_Intron|A2BP1_uc002cyv.1_Silent_p.F128F|A2BP1_uc010uyb.1_Silent_p.F128F|A2BP1_uc002cyw.2_Silent_p.F148F|A2BP1_uc002cyy.2_Silent_p.F148F|A2BP1_uc002cyx.2_Silent_p.F148F|A2BP1_uc010uyc.1_Silent_p.F148F	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	128	RRM.				mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CCTTCAGGTTCCGGGATCCGG	0.547													22	51					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7645572	7645572	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:7645572G>A	uc002cys.2	+	8	1478	c.490G>A	c.(490-492)GAA>AAA	p.E164K	A2BP1_uc010buf.1_Missense_Mutation_p.E164K|A2BP1_uc002cyr.1_Missense_Mutation_p.E163K|A2BP1_uc002cyt.2_Missense_Mutation_p.E164K|A2BP1_uc010uxz.1_Missense_Mutation_p.E207K|A2BP1_uc010uya.1_Intron|A2BP1_uc002cyv.1_Missense_Mutation_p.E164K|A2BP1_uc010uyb.1_Missense_Mutation_p.E164K|A2BP1_uc002cyw.2_Missense_Mutation_p.E184K|A2BP1_uc002cyy.2_Missense_Mutation_p.E184K|A2BP1_uc002cyx.2_Missense_Mutation_p.E184K|A2BP1_uc010uyc.1_Missense_Mutation_p.E184K	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	164	RRM.				mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CGTAACTTTCGAAAATAGTGC	0.453													41	91					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7703877	7703877	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:7703877G>A	uc002cys.2	+	12	1806	c.818G>A	c.(817-819)CGA>CAA	p.R273Q	A2BP1_uc010buf.1_Missense_Mutation_p.R273Q|A2BP1_uc002cyr.1_Missense_Mutation_p.R272Q|A2BP1_uc002cyt.2_Missense_Mutation_p.R246Q|A2BP1_uc010uxz.1_Missense_Mutation_p.R316Q|A2BP1_uc010uya.1_Missense_Mutation_p.R230Q|A2BP1_uc002cyv.1_Missense_Mutation_p.R273Q|A2BP1_uc010uyb.1_Missense_Mutation_p.R273Q|A2BP1_uc002cyw.2_Missense_Mutation_p.R293Q|A2BP1_uc002cyy.2_Missense_Mutation_p.R293Q|A2BP1_uc002cyx.2_Missense_Mutation_p.R293Q|A2BP1_uc010uyc.1_Missense_Mutation_p.R266Q	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	273					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		GCGCACCTGCGAGGCCGCGGT	0.617													19	25					0	0	1	0	0
C16orf68	79091	broad.mit.edu	37	16	8736037	8736037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:8736037C>T	uc002cyz.2	+	8	1156	c.880C>T	c.(880-882)CAC>TAC	p.H294Y	C16orf68_uc002cza.2_Missense_Mutation_p.H238Y	NM_024109	NP_077014	Q9BUU2	MET22_HUMAN	hypothetical protein LOC79091	294							methyltransferase activity				0						CTTGTACGATCACACCACCAT	0.468													10	87					0	0	1	0	0
C16orf68	79091	broad.mit.edu	37	16	8738571	8738571	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:8738571C>T	uc002cyz.2	+	10	1444	c.1168C>T	c.(1168-1170)CTC>TTC	p.L390F	C16orf68_uc002cza.2_Missense_Mutation_p.L334F|C16orf68_uc002czb.2_5'Flank	NM_024109	NP_077014	Q9BUU2	MET22_HUMAN	hypothetical protein LOC79091	390							methyltransferase activity				0						TTACGAGCGCCTCCAGCAACT	0.632													11	33					0	0	1	0	0
ABAT	18	broad.mit.edu	37	16	8862729	8862729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:8862729C>T	uc002czc.3	+	11	881	c.715C>T	c.(715-717)CCT>TCT	p.P239S	ABAT_uc002czd.3_Missense_Mutation_p.P239S|ABAT_uc010buh.2_Missense_Mutation_p.P181S|ABAT_uc010bui.2_Missense_Mutation_p.P239S	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	239					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	GATCGACATCCCTTCCTTTGA	0.527													32	300					0	0	1	0	0
USP7	7874	broad.mit.edu	37	16	8987935	8987935	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:8987935G>A	uc002czl.2	-	31	3428	c.3229C>T	c.(3229-3231)CTA>TTA	p.L1077L	USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Silent_p.L978L|USP7_uc002czk.2_Silent_p.L1061L	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	1077					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						TCGAGCCCTAGCCAAGGCCGA	0.522													35	117					0	0	1	0	0
USP7	7874	broad.mit.edu	37	16	9010979	9010979	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9010979G>A	uc002czl.2	-	7	954	c.755C>T	c.(754-756)TCG>TTG	p.S252L	USP7_uc010uyk.1_Missense_Mutation_p.S153L|USP7_uc010uyj.1_Missense_Mutation_p.S153L|USP7_uc002czk.2_Missense_Mutation_p.S236L|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	252					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						GCTTTTAGACGAATCATCCCC	0.358													47	96					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857197	9857197	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9857197G>A	uc002czo.3	-	13	4752	c.4204C>T	c.(4204-4206)CGG>TGG	p.R1402W	GRIN2A_uc010uym.1_Missense_Mutation_p.R1402W|GRIN2A_uc010uyn.1_3'UTR|GRIN2A_uc002czr.3_3'UTR	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1402	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AAGGACGACCGAAGATAGCTG	0.522													17	65					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857232	9857232	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9857232G>A	uc002czo.3	-	13	4717	c.4169C>T	c.(4168-4170)TCG>TTG	p.S1390L	GRIN2A_uc010uym.1_Missense_Mutation_p.S1390L|GRIN2A_uc010uyn.1_Missense_Mutation_p.R1119C|GRIN2A_uc002czr.3_Missense_Mutation_p.R1276C	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1390	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGATGGCAACGAGTGTTTGTA	0.552													17	67					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857389	9857389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9857389C>T	uc002czo.3	-	13	4560	c.4012G>A	c.(4012-4014)GGG>AGG	p.G1338R	GRIN2A_uc010uym.1_Missense_Mutation_p.G1338R|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1338	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTTTTTTTCCCCGAGAGTTTG	0.547													17	83					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857825	9857825	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9857825G>A	uc002czo.3	-	13	4124	c.3576C>T	c.(3574-3576)ACC>ACT	p.T1192T	GRIN2A_uc010uym.1_Silent_p.T1192T|GRIN2A_uc010uyn.1_Silent_p.T1035T|GRIN2A_uc002czr.3_Silent_p.T1192T	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1192	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGTCTTTCAAGGTGAAGTGCT	0.542													127	248					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857927	9857927	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9857927G>A	uc002czo.3	-	13	4022	c.3474C>T	c.(3472-3474)TTC>TTT	p.F1158F	GRIN2A_uc010uym.1_Silent_p.F1158F|GRIN2A_uc010uyn.1_Silent_p.F1001F|GRIN2A_uc002czr.3_Silent_p.F1158F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1158	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCCCCTTGCGGAAGTTTTCAC	0.527													13	155					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857960	9857960	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9857960G>A	uc002czo.3	-	13	3989	c.3441C>T	c.(3439-3441)TTC>TTT	p.F1147F	GRIN2A_uc010uym.1_Silent_p.F1147F|GRIN2A_uc010uyn.1_Silent_p.F990F|GRIN2A_uc002czr.3_Silent_p.F1147F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1147	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGGGGTCCGGGAAGTCCACGT	0.527													32	112					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858068	9858068	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9858068G>A	uc002czo.3	-	13	3881	c.3333C>T	c.(3331-3333)AGC>AGT	p.S1111S	GRIN2A_uc010uym.1_Silent_p.S1111S|GRIN2A_uc010uyn.1_Silent_p.S954S|GRIN2A_uc002czr.3_Silent_p.S1111S	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1111	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTCTAGGGGAGCTTGATTTGG	0.483													47	103					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858321	9858321	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9858321G>A	uc002czo.3	-	13	3628	c.3080C>T	c.(3079-3081)TCC>TTC	p.S1027F	GRIN2A_uc010uym.1_Missense_Mutation_p.S1027F|GRIN2A_uc010uyn.1_Missense_Mutation_p.S870F|GRIN2A_uc002czr.3_Missense_Mutation_p.S1027F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1027	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGGATTCTGGGATAGTGAATC	0.542													18	123					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858356	9858356	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9858356C>T	uc002czo.3	-	13	3593	c.3045G>A	c.(3043-3045)AAG>AAA	p.K1015K	GRIN2A_uc010uym.1_Silent_p.K1015K|GRIN2A_uc010uyn.1_Silent_p.K858K|GRIN2A_uc002czr.3_Silent_p.K1015K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1015	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCACGGATTTCTTCCACAGCT	0.532													36	74					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858500	9858500	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9858500C>T	uc002czo.3	-	13	3449	c.2901G>A	c.(2899-2901)GTG>GTA	p.V967V	GRIN2A_uc010uym.1_Silent_p.V967V|GRIN2A_uc010uyn.1_Silent_p.V810V|GRIN2A_uc002czr.3_Silent_p.V967V	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	967	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCCGGTTGGCCACAAATGTTT	0.458													40	79					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858544	9858544	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9858544C>G	uc002czo.3	-	13	3405	c.2857G>C	c.(2857-2859)GAG>CAG	p.E953Q	GRIN2A_uc010uym.1_Missense_Mutation_p.E953Q|GRIN2A_uc010uyn.1_Missense_Mutation_p.E796Q|GRIN2A_uc002czr.3_Missense_Mutation_p.E953Q	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	953	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AAAATGCTCTCTTTCCCCTGA	0.443													14	164					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9916206	9916206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9916206G>A	uc002czo.3	-	10	2631	c.2083C>T	c.(2083-2085)CGG>TGG	p.R695W	GRIN2A_uc010uym.1_Missense_Mutation_p.R695W|GRIN2A_uc010uyn.1_Missense_Mutation_p.R538W|GRIN2A_uc002czr.3_Missense_Mutation_p.R695W	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	695	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TAGTTATTCCGAATGTTTCTC	0.408													28	75					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9934828	9934828	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9934828T>A	uc002czo.3	-	6	2010	c.1462A>T	c.(1462-1464)AAA>TAA	p.K488*	GRIN2A_uc010uym.1_Nonsense_Mutation_p.K488*|GRIN2A_uc010uyn.1_Nonsense_Mutation_p.K331*|GRIN2A_uc002czr.3_Nonsense_Mutation_p.K488*	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	488	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTGTTAACTTTCTTGCCATGC	0.438													57	116					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9943624	9943624	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:9943624G>A	uc002czo.3	-	5	1865	c.1317C>T	c.(1315-1317)TTC>TTT	p.F439F	GRIN2A_uc010uym.1_Silent_p.F439F|GRIN2A_uc010uyn.1_Silent_p.F282F|GRIN2A_uc002czr.3_Silent_p.F439F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	439	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGATTTTGACGAACTTCCGAC	0.502													30	74					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	10031943	10031943	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10031943C>T	uc002czo.3	-	3	1428	c.880G>A	c.(880-882)GAC>AAC	p.D294N	GRIN2A_uc010uym.1_Missense_Mutation_p.D294N|GRIN2A_uc010uyn.1_Missense_Mutation_p.D137N|GRIN2A_uc002czr.3_Missense_Mutation_p.D294N	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	294	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCAATGCCGTCCCTCACTCTC	0.572													16	38					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	10273996	10273996	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10273996G>A	uc002czo.3	-	2	821	c.273C>T	c.(271-273)TCC>TCT	p.S91S	GRIN2A_uc010uym.1_Silent_p.S91S|GRIN2A_uc002czr.3_Silent_p.S91S|GRIN2A_uc010buk.2_Silent_p.S91S	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	91	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGCGTGCCCCGGACATGAGGT	0.637													27	110					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	10274034	10274034	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10274034G>A	uc002czo.3	-	2	783	c.235C>T	c.(235-237)CCC>TCC	p.P79S	GRIN2A_uc010uym.1_Missense_Mutation_p.P79S|GRIN2A_uc002czr.3_Missense_Mutation_p.P79S|GRIN2A_uc010buk.2_Missense_Mutation_p.P79S	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	79	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGGCTCTTGGGGTCGGTGCGG	0.662													26	109					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	10274047	10274047	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10274047C>T	uc002czo.3	-	2	770	c.222G>A	c.(220-222)ATG>ATA	p.M74I	GRIN2A_uc010uym.1_Missense_Mutation_p.M74I|GRIN2A_uc002czr.3_Missense_Mutation_p.M74I|GRIN2A_uc010buk.2_Missense_Mutation_p.M74I	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	74	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGGTGCGGTTCATCAGCAGAG	0.662													45	91					0	0	1	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10524919	10524919	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10524919C>T	uc002czu.2	+	3	669	c.442C>T	c.(442-444)CAG>TAG	p.Q148*	ATF7IP2_uc002czv.2_Nonsense_Mutation_p.Q148*|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Nonsense_Mutation_p.Q148*|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	148					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TTCTGAGCATCAGACAAATGT	0.448													23	127					0	0	1	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10525053	10525053	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10525053G>A	uc002czu.2	+	3	803	c.576G>A	c.(574-576)AAG>AAA	p.K192K	ATF7IP2_uc002czv.2_Silent_p.K192K|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Silent_p.K192K|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	192					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TGGGTGACAAGAAAACTGACC	0.423													10	102					0	0	1	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10551334	10551334	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10551334G>A	uc002czu.2	+	7	1527	c.1300G>A	c.(1300-1302)GGA>AGA	p.G434R	ATF7IP2_uc002czv.2_Missense_Mutation_p.G434R|ATF7IP2_uc010uyo.1_Intron|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Missense_Mutation_p.G434R|ATF7IP2_uc010uyq.1_Intron	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	434					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TTCCGAAAAAGGAAGTAAAAA	0.294													43	110					0	0	1	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10576035	10576035	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10576035G>A	uc002czu.2	+	12	2205	c.1978G>A	c.(1978-1980)GAT>AAT	p.D660N	ATF7IP2_uc002czv.2_3'UTR|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Missense_Mutation_p.D204N|ATF7IP2_uc002czw.2_Missense_Mutation_p.D660N|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	660	Fibronectin type-III.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CCAATCAAAAGATATTTTTGG	0.328													16	93					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10721541	10721541	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10721541C>T	uc002czz.1	-	7	1429	c.1357G>A	c.(1357-1359)GAG>AAG	p.E453K		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	453					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						ATGGCGAGCTCGTGCTCCAGC	0.637													11	51					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10769819	10769819	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10769819C>T	uc002czz.1	-	5	1155	c.1083G>A	c.(1081-1083)GCG>GCA	p.A361A		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	361	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						TGCTCACCTTCGCCAGCTGCG	0.592													9	81					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10788459	10788459	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10788459G>A	uc002czz.1	-	1	344	c.272C>T	c.(271-273)CCC>CTC	p.P91L		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	91					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						CCAGTCGTGGGGGCTATAGCG	0.672													16	68					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10788473	10788473	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10788473G>A	uc002czz.1	-	1	330	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	86					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						TATAGCGAGAGAAGAGTGCGG	0.667													31	65					0	0	1	0	0
NUBP1	4682	broad.mit.edu	37	16	10850585	10850585	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:10850585C>T	uc002daa.1	+	6	422	c.399C>T	c.(397-399)TTC>TTT	p.F133F	NUBP1_uc010bum.1_Intron|NUBP1_uc002dab.1_Silent_p.F122F	NM_002484	NP_002475	P53384	NUBP1_HUMAN	nucleotide binding protein 1	133					cell growth|cellular iron ion homeostasis|iron-sulfur cluster assembly	cytosol	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|nucleoside-triphosphatase activity|protein binding			ovary(1)|skin(1)	2						CAGTGGGCTTCCTGCTCAGCA	0.527													6	61					0	0	1	0	0
CIITA	4261	broad.mit.edu	37	16	11000810	11000810	+	Silent	SNP	C	T	T	rs141202424	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:11000810C>T	uc002dai.3	+	11	1594	c.1461C>T	c.(1459-1461)ATC>ATT	p.I487I	CIITA_uc002daj.3_Silent_p.I488I|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Silent_p.I487I|CIITA_uc002dah.2_Silent_p.I439I|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	487	NACHT.				interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						TCAGCCACATCTTGAAGAGAC	0.622			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								51	110					0	0	1	0	0
CIITA	4261	broad.mit.edu	37	16	11004048	11004048	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:11004048G>A	uc002dai.3	+	13	2953	c.2820G>A	c.(2818-2820)ACG>ACA	p.T940T	CIITA_uc002daj.3_Silent_p.T941T|CIITA_uc002dak.3_Silent_p.T356T|CIITA_uc010bup.1_Missense_Mutation_p.R337Q	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	940			Missing (in BLS2).		interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						TCTCCAGGACGAGAAGTTCCT	0.567			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								5	20					0	0	1	0	0
CIITA	4261	broad.mit.edu	37	16	11009471	11009471	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:11009471G>A	uc002dai.3	+	14	3066	c.2933G>A	c.(2932-2934)CGG>CAG	p.R978Q	CIITA_uc002daj.3_Missense_Mutation_p.R979Q|CIITA_uc002dak.3_Missense_Mutation_p.R394Q	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	978			Missing (in BLS2).		interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						AAACTGGTGCGGATCCTCACG	0.498			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								12	62					0	0	1	0	0
CLEC16A	23274	broad.mit.edu	37	16	11154776	11154776	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:11154776C>T	uc002dao.2	+	19	2243	c.2013C>T	c.(2011-2013)TTC>TTT	p.F671F	CLEC16A_uc002dan.3_Silent_p.F653F	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	671										ovary(1)|central_nervous_system(1)	2						GGGTGTTCTTCATGCTGCGTT	0.542													64	234					0	0	1	0	0
TNP2	7142	broad.mit.edu	37	16	11361859	11361859	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:11361859G>A	uc002das.2	-	2	452	c.411C>T	c.(409-411)TCC>TCT	p.S137S	C16orf75_uc002daq.1_Intron	NM_005425	NP_005416	Q05952	STP2_HUMAN	transition protein 2 (during histone to	137					cell differentiation|multicellular organismal development|spermatogenesis	nucleosome|nucleus	DNA binding				0						CTCATTAGTTGGATTTCCATC	0.443													8	12					0	0	1	0	0
TNP2	7142	broad.mit.edu	37	16	11363045	11363045	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:11363045G>A	uc002das.2	-	1	116	c.75C>T	c.(73-75)ACC>ACT	p.T25T	C16orf75_uc002daq.1_Intron	NM_005425	NP_005416	Q05952	STP2_HUMAN	transition protein 2 (during histone to	25					cell differentiation|multicellular organismal development|spermatogenesis	nucleosome|nucleus	DNA binding				0						GGCGGGTGCAGGTGCGGCTTT	0.632													38	154					0	0	1	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11862215	11862215	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:11862215G>A	uc002dbk.2	-	11	1514	c.1316C>T	c.(1315-1317)ACC>ATC	p.T439I	ZC3H7A_uc002dbj.2_5'Flank|ZC3H7A_uc002dbl.2_Missense_Mutation_p.T439I|ZC3H7A_uc002dbm.1_Missense_Mutation_p.T349I	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	439						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						CAATTCATGGGTTCCTTCGAG	0.408													55	126					0	0	1	0	0
RSL1D1	26156	broad.mit.edu	37	16	11931783	11931783	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:11931783G>A	uc002dbp.1	-	9	1407	c.1334C>T	c.(1333-1335)TCG>TTG	p.S445L	RSL1D1_uc010buv.1_Missense_Mutation_p.S444L|RSL1D1_uc010uyw.1_Missense_Mutation_p.S225L	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	445					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						tttccccagcgaaggactttt	0.139													151	281					0	0	1	0	0
RSL1D1	26156	broad.mit.edu	37	16	11941590	11941590	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:11941590G>A	uc002dbp.1	-	3	392	c.319C>T	c.(319-321)CCT>TCT	p.P107S	RSL1D1_uc010buv.1_Missense_Mutation_p.P107S|RSL1D1_uc010uyw.1_5'UTR|RSL1D1_uc010buw.2_RNA	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	107					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						GTCTTTTCAGGAGTTGAATTG	0.348													12	48					0	0	1	0	0
TNFRSF17	608	broad.mit.edu	37	16	12060155	12060155	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:12060155G>A	uc002dbv.2	+	2	452	c.234G>A	c.(232-234)AGG>AGA	p.R78R	TNFRSF17_uc010buy.2_Silent_p.R78R|TNFRSF17_uc010buz.2_Intron	NM_001192	NP_001183	Q02223	TNR17_HUMAN	tumor necrosis factor receptor superfamily,	78	Cytoplasmic (Potential).				cell proliferation|multicellular organismal development	endomembrane system|integral to membrane|plasma membrane					0						TTTTGCTAAGGAAGATAAACT	0.383			T	IL2	intestinal T-cell lymphoma								29	92					0	0	1	0	0
RUNDC2A	84127	broad.mit.edu	37	16	12145944	12145944	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:12145944C>T	uc002dbw.1	+	8	1051	c.989C>T	c.(988-990)TCT>TTT	p.S330F	SNX29_uc002dby.3_5'Flank	NM_032167	NP_115543	Q9HA26	RUN2A_HUMAN	RUN domain containing 2A	330										ovary(1)	1						GATTCCCTGTCTTTGAACGGG	0.468			T	CIITA	PMBL|Hodgkin Lymphona|								44	152					0	0	1	0	0
CPPED1	55313	broad.mit.edu	37	16	12798716	12798716	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:12798716G>A	uc002dca.3	-	3	591	c.480C>T	c.(478-480)TTC>TTT	p.F160F	CPPED1_uc002dcb.3_Intron|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	160							hydrolase activity|metal ion binding				0						TGAGGACCAGGAACAGGACGC	0.617													14	43					0	0	1	0	0
MKL2	57496	broad.mit.edu	37	16	14339441	14339441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:14339441C>T	uc010uza.1	+	11	1291	c.1136C>T	c.(1135-1137)CCT>CTT	p.P379L	MKL2_uc002dcg.2_Missense_Mutation_p.P379L|MKL2_uc002dcj.2_5'Flank	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	368					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						AATGCCACACCTAACACACCA	0.378													30	118					0	0	1	0	0
MKL2	57496	broad.mit.edu	37	16	14341131	14341131	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:14341131C>T	uc010uza.1	+	12	2169	c.2014C>T	c.(2014-2016)CTT>TTT	p.L672F	MKL2_uc002dcg.2_Missense_Mutation_p.L672F|MKL2_uc002dcj.2_5'Flank	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	661					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						TGGCCAGACCCTTGTTGCCAA	0.582													28	51					0	0	1	0	0
MKL2	57496	broad.mit.edu	37	16	14355033	14355033	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:14355033T>C	uc010uza.1	+	17	3187	c.3032T>C	c.(3031-3033)CTG>CCG	p.L1011P	MKL2_uc002dcg.2_Missense_Mutation_p.L961P|MKL2_uc002dcj.2_Missense_Mutation_p.L256P	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	1000					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						CCCTTCTCTCTGATCGAGGAC	0.488													7	62					0	0	1	0	0
BFAR	51283	broad.mit.edu	37	16	14738443	14738443	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:14738443C>T	uc002dco.2	+	2	521	c.240C>T	c.(238-240)TTC>TTT	p.F80F	BFAR_uc002dcm.2_Silent_p.F80F|BFAR_uc002dcn.2_Silent_p.F80F|BFAR_uc002dcp.2_Silent_p.F80F|BFAR_uc010uzh.1_Missense_Mutation_p.P21S	NM_016561	NP_057645	Q9NZS9	BFAR_HUMAN	bifunctional apoptosis regulator	80	Cytoplasmic (Potential).				anti-apoptosis|apoptosis	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	structural molecule activity|zinc ion binding			ovary(1)|skin(1)	2						GGGAAGGTTTCCCCAAAGTCA	0.408													39	108					0	0	1	0	0
ABCC6P2	730013	broad.mit.edu	37	16	14916757	14916757	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:14916757A>G	uc002dcu.2	-	2	238	c.205T>C	c.(205-207)TTC>CTC	p.F69L		NR_023387				SubName: Full=ATP-binding cassette, sub-family C (CFTR/MRP), member 6; SubName: Full=Up-regulated gene 7;												0						TTGGCTTTGAAGAGTGGGGAC	0.602													6	19					0	0	1	0	0
NOMO1	23420	broad.mit.edu	37	16	14989431	14989431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:14989431G>A	uc002dcv.2	+	31	3664	c.3598G>A	c.(3598-3600)GCA>ACA	p.A1200T		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	1200	Cytoplasmic (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						GCTCGGCCAGGCAGCCTCTGA	0.537													64	627					0	0	1	0	0
NPIP	9284	broad.mit.edu	37	16	15026547	15026547	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:15026547C>T	uc002dcx.3	+	7		c.1195C>T						Q9UND3	NPIP_HUMAN	Homo sapiens neuroblastoma cDNA, clone:Nbla00537, full insert sequence.						mRNA transport|protein transport|transmembrane transport	nuclear membrane|nuclear pore					0						GATCGCCACCCCGCACAGCCT	0.632													14	110					0	0	1	0	0
KIAA0430	9665	broad.mit.edu	37	16	15706608	15706608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:15706608G>A	uc002ddr.2	-	17	3473	c.3280C>T	c.(3280-3282)CCT>TCT	p.P1094S	KIAA0430_uc002ddq.2_Missense_Mutation_p.P928S|KIAA0430_uc010uzv.1_Missense_Mutation_p.P1090S|KIAA0430_uc010uzw.1_Missense_Mutation_p.P1093S	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1093						peroxisome	nucleotide binding|RNA binding				0						TTACCTACAGGACTCTTCGAA	0.463													50	156					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15809077	15809077	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:15809077C>T	uc002ddy.2	-	39	5664	c.5557G>A	c.(5557-5559)GAA>AAA	p.E1853K	MYH11_uc002ddv.2_Missense_Mutation_p.E1860K|MYH11_uc002ddw.2_Missense_Mutation_p.E1853K|MYH11_uc002ddx.2_Missense_Mutation_p.E1860K|MYH11_uc010bvg.2_Missense_Mutation_p.E1685K|NDE1_uc010uzy.1_Intron|NDE1_uc002dds.2_Intron|MYH11_uc010bvh.2_Missense_Mutation_p.E559K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1853	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						AGCAAGATTTCCTTCAGCTTC	0.607			T	CBFB	AML								31	69					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15815444	15815444	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:15815444C>T	uc002ddy.2	-	32	4520	c.4413G>A	c.(4411-4413)AGG>AGA	p.R1471R	MYH11_uc002ddv.2_Silent_p.R1478R|MYH11_uc002ddw.2_Silent_p.R1471R|MYH11_uc002ddx.2_Silent_p.R1478R|MYH11_uc010bvg.2_Silent_p.R1303R|NDE1_uc010uzy.1_Intron|NDE1_uc002dds.2_Intron|MYH11_uc010bvh.2_Silent_p.R177R|NDE1_uc002ddz.1_5'Flank	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1471	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CAGCTCTGTCCCTCTCATCCG	0.557			T	CBFB	AML								12	70					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15826454	15826454	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:15826454C>T	uc002ddy.2	-	27	3725	c.3618G>A	c.(3616-3618)GAG>GAA	p.E1206E	MYH11_uc002ddv.2_Silent_p.E1213E|MYH11_uc002ddw.2_Silent_p.E1206E|MYH11_uc002ddx.2_Silent_p.E1213E|MYH11_uc010bvg.2_Silent_p.E1038E	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1206	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CTGTGAGCTCCTCCACCGCCT	0.527			T	CBFB	AML								39	151					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15829321	15829321	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:15829321C>T	uc002ddy.2	-	26	3515	c.3408G>A	c.(3406-3408)AAG>AAA	p.K1136K	MYH11_uc002ddv.2_Silent_p.K1143K|MYH11_uc002ddw.2_Silent_p.K1136K|MYH11_uc002ddx.2_Silent_p.K1143K|MYH11_uc010bvg.2_Silent_p.K968K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1136	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCTTTTCAGCCTTGTTCCTGG	0.597			T	CBFB	AML								47	94					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15831419	15831419	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:15831419C>T	uc002ddy.2	-	25	3287	c.3180G>A	c.(3178-3180)CTG>CTA	p.L1060L	MYH11_uc002ddv.2_Silent_p.L1067L|MYH11_uc002ddw.2_Silent_p.L1060L|MYH11_uc002ddx.2_Silent_p.L1067L|MYH11_uc010bvg.2_Silent_p.L892L	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1060	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CATCACCCTCCAGCTTCCGTT	0.587			T	CBFB	AML								22	75					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15917200	15917200	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:15917200G>A	uc002ddy.2	-	3	521	c.414C>T	c.(412-414)ATC>ATT	p.I138I	MYH11_uc002ddv.2_Silent_p.I138I|MYH11_uc002ddw.2_Silent_p.I138I|MYH11_uc002ddx.2_Silent_p.I138I|MYH11_uc010bvg.2_5'UTR|MYH11_uc002deb.3_Silent_p.I138I	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	138	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						ACATGTCGACGATCTTCTCCG	0.552			T	CBFB	AML								28	62					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15931994	15931994	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:15931994G>A	uc002ddy.2	-	2	223	c.116C>T	c.(115-117)CCC>CTC	p.P39L	MYH11_uc002ddv.2_Missense_Mutation_p.P39L|MYH11_uc002ddw.2_Missense_Mutation_p.P39L|MYH11_uc002ddx.2_Missense_Mutation_p.P39L|MYH11_uc010bvg.2_5'UTR|MYH11_uc002deb.3_Missense_Mutation_p.P39L	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	39	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CTTCTCCGAGGGGACCCAGAC	0.572			T	CBFB	AML								23	142					0	0	1	0	0
ABCC1	4363	broad.mit.edu	37	16	16126970	16126970	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:16126970C>T	uc010bvi.2	+	6	795	c.620C>T	c.(619-621)CCC>CTC	p.P207L	ABCC1_uc010bvj.2_Missense_Mutation_p.P207L|ABCC1_uc010bvk.2_Missense_Mutation_p.P207L|ABCC1_uc010bvl.2_Missense_Mutation_p.P207L|ABCC1_uc010bvm.2_Missense_Mutation_p.P207L|ABCC1_uc002del.3_Missense_Mutation_p.P91L|ABCC1_uc010bvn.2_Missense_Mutation_p.P70L	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	207	Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	CACTAGAATCCCTGCCCAGAG	0.532													15	67					0	0	1	0	0
ABCC1	4363	broad.mit.edu	37	16	16138400	16138400	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:16138400C>T	uc010bvi.2	+	8	1078	c.903C>T	c.(901-903)ATC>ATT	p.I301I	ABCC1_uc010bvj.2_Silent_p.I301I|ABCC1_uc010bvk.2_Silent_p.I301I|ABCC1_uc010bvl.2_Silent_p.I301I|ABCC1_uc010bvm.2_Silent_p.I301I|ABCC1_uc002del.3_Silent_p.I185I|ABCC1_uc010bvn.2_Silent_p.I164I	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	301	Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	AGGCTTTGATCGTCAAGTCCC	0.532													24	62					0	0	1	0	0
ABCC1	4363	broad.mit.edu	37	16	16205242	16205242	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:16205242C>T	uc010bvi.2	+	22	3057	c.2882C>T	c.(2881-2883)TCC>TTC	p.S961F	ABCC1_uc010bvj.2_Missense_Mutation_p.S902F|ABCC1_uc010bvk.2_Missense_Mutation_p.S905F|ABCC1_uc010bvl.2_Missense_Mutation_p.S961F|ABCC1_uc010bvm.2_Missense_Mutation_p.S846F|ABCC1_uc002del.3_Missense_Mutation_p.S855F	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	961	Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GTCAAGCTTTCCGTGTACTGG	0.468													55	142					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16272764	16272764	+	Missense_Mutation	SNP	C	T	T	rs57794451	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:16272764C>T	uc002den.3	-	18	2343	c.2306G>A	c.(2305-2307)AGA>AAA	p.R769K	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	769	ABC transporter 1.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		AGCTGCCTTTCTGTATACAGC	0.602													17	48					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16276673	16276673	+	Silent	SNP	G	A	A	rs57866002		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:16276673G>A	uc002den.3	-	16	2095	c.2058C>T	c.(2056-2058)TTC>TTT	p.F686F	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	686	ABC transporter 1.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CGATGCTCACGAACCCCTCCA	0.652													18	49					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16276744	16276744	+	Missense_Mutation	SNP	C	T	T	rs72653780		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:16276744C>T	uc002den.3	-	16	2024	c.1987G>A	c.(1987-1989)GGT>AGT	p.G663S	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	663	ATP 1 (Potential).|ABC transporter 1.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CCCACTGGACCGACAACAGCC	0.632													25	71					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16282772	16282772	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:16282772C>T	uc002den.3	-	13	1732	c.1695G>A	c.(1693-1695)GAG>GAA	p.E565E	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Silent_p.E577E	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	565	Extracellular (By similarity).|ABC transmembrane type-1 1.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CAAAGGCTTTCTCTGCATTCA	0.582													17	46					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	16415110	16415110	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:16415110C>T	uc010vab.1	+	7	1630	c.1028C>T	c.(1027-1029)CCG>CTG	p.P343L	uc002der.3_RNA					SubName: Full=cDNA FLJ59085, highly similar to Polycystin-1;																		GTAGCACTGCCGTGGCTCGGT	0.652													7	13					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17228372	17228372	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:17228372C>T	uc002dfa.2	-	9	2070	c.1985G>A	c.(1984-1986)CGG>CAG	p.R662Q		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	662	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CGTCTCGGCCCGTCGAAGACC	0.612													7	89					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17228395	17228395	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:17228395G>A	uc002dfa.2	-	9	2047	c.1962C>T	c.(1960-1962)TCC>TCT	p.S654S		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	654	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GGCGGGCAAAGGAGTGGTACA	0.622													25	72					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17235031	17235032	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:17235031_17235032GG>AA	uc002dfa.2	-	7	1650_1651	c.1565_1566CC>TT	c.(1564-1566)TCC>TTT	p.S522F		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	522	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GCAGGGTGTAGGAGTAGAACTG	0.48													38	316					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17294426	17294426	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:17294426C>T	uc002dfa.2	-	4	1084	c.999G>A	c.(997-999)GTG>GTA	p.V333V		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	333	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GGCCGTGGACCACCAGGACAA	0.562													59	146					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17353254	17353254	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:17353254G>A	uc002dfa.2	-	3	589	c.504C>T	c.(502-504)TTC>TTT	p.F168F		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	168	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						TCCTGGGTGCGAAGTTGCTGT	0.498													28	98					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17353332	17353332	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:17353332C>T	uc002dfa.2	-	3	511	c.426G>A	c.(424-426)CCG>CCA	p.P142P		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	142	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CTTTCTCTTTCGGCCGATGAG	0.418													23	81					0	0	1	0	0
NOMO2	283820	broad.mit.edu	37	16	18544465	18544465	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:18544465G>A	uc002dfe.2	-	12	1329	c.1257C>T	c.(1255-1257)TTC>TTT	p.F419F	NOMO2_uc002dff.2_Silent_p.F419F|NOMO2_uc010bvx.2_Silent_p.F252F	NM_001004060	NP_001004060	Q5JPE7	NOMO2_HUMAN	nodal modulator 2 isoform 1	419	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			skin(1)	1						CGGTGTCCGGGAAGCGAATGA	0.453													35	154					0	0	1	0	0
ABCC6P1	653190	broad.mit.edu	37	16	18603886	18603886	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:18603886C>T	uc002dfg.2	+	9	1053	c.853C>T	c.(853-855)CCC>TCC	p.P285S	ABCC6P1_uc010vam.1_Missense_Mutation_p.P228S	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						TATTGGTGATCCCAAGCCTCC	0.562													13	19					0	0	1	0	0
SMG1	23049	broad.mit.edu	37	16	18871008	18871008	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:18871008G>A	uc002dfm.2	-	27	4186	c.3823C>T	c.(3823-3825)CCT>TCT	p.P1275S	SMG1_uc010bwb.2_Missense_Mutation_p.P1135S|SMG1_uc010bwa.2_Missense_Mutation_p.P6S	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	1275	FAT.|Interaction with SMG8 and SMG9.		P -> R.		DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						AACATGTTAGGAAGCAGTTTT	0.313													21	40					0	0	1	0	0
TMC7	79905	broad.mit.edu	37	16	19047005	19047005	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19047005G>A	uc002dfq.2	+	7	995	c.865G>A	c.(865-867)GAA>AAA	p.E289K	TMC7_uc010vao.1_Missense_Mutation_p.E289K|TMC7_uc002dfp.2_Missense_Mutation_p.E289K|TMC7_uc010vap.1_Missense_Mutation_p.E179K	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	289	Cytoplasmic (Potential).					integral to membrane				skin(2)|ovary(1)	3						CAGGTCGGTGGAAGGATTCAA	0.438													16	83					0	0	1	0	0
TMC7	79905	broad.mit.edu	37	16	19067962	19067962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19067962C>T	uc002dfq.2	+	14	2100	c.1970C>T	c.(1969-1971)TCC>TTC	p.S657F	TMC7_uc002dfp.2_Missense_Mutation_p.S657F|TMC7_uc010vap.1_Missense_Mutation_p.S547F	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	657	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						TCGCTGCAGTCCTTCATCCAT	0.557													40	89					0	0	1	0	0
SYT17	51760	broad.mit.edu	37	16	19184088	19184088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19184088C>T	uc002dfw.2	+	2	353	c.22C>T	c.(22-24)CCA>TCA	p.P8S	SYT17_uc002dfx.2_5'UTR|SYT17_uc002dfy.2_Missense_Mutation_p.P4S|SYT17_uc002dfv.1_Intron	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	8						membrane|synaptic vesicle	transporter activity			ovary(1)	1						GCAGTTGGAACCATTAAACGA	0.433													14	59					0	0	1	0	0
SYT17	51760	broad.mit.edu	37	16	19191795	19191795	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19191795C>T	uc002dfw.2	+	4	596	c.265C>T	c.(265-267)CCG>TCG	p.P89S	SYT17_uc002dfx.2_Missense_Mutation_p.P28S|SYT17_uc002dfy.2_Missense_Mutation_p.P85S|SYT17_uc002dfv.1_Missense_Mutation_p.P28S	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	89						membrane|synaptic vesicle	transporter activity			ovary(1)	1						GACCAATTCCCCGGATGGAAG	0.572											OREG0023658	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	58					0	0	1	0	0
SYT17	51760	broad.mit.edu	37	16	19194885	19194885	+	Missense_Mutation	SNP	G	A	A	rs149672382		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19194885G>A	uc002dfw.2	+	5	698	c.367G>A	c.(367-369)GAT>AAT	p.D123N	SYT17_uc002dfx.2_Missense_Mutation_p.D62N|SYT17_uc002dfy.2_Missense_Mutation_p.D119N|SYT17_uc002dfv.1_Missense_Mutation_p.D62N	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	123						membrane|synaptic vesicle	transporter activity			ovary(1)	1						TCCACTCATCGATATTAAACC	0.527													15	130					0	0	1	0	0
SYT17	51760	broad.mit.edu	37	16	19195023	19195023	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19195023G>A	uc002dfw.2	+	5	836	c.505G>A	c.(505-507)GAC>AAC	p.D169N	SYT17_uc002dfx.2_Missense_Mutation_p.D108N|SYT17_uc002dfy.2_Missense_Mutation_p.D165N|SYT17_uc002dfv.1_Missense_Mutation_p.D108N	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	169						membrane|synaptic vesicle	transporter activity			ovary(1)	1						CTCCAACAGCGACGATGTGGA	0.562													17	56					0	0	1	0	0
SYT17	51760	broad.mit.edu	37	16	19195292	19195292	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19195292G>A	uc002dfw.2	+	5	1105	c.774G>A	c.(772-774)GAG>GAA	p.E258E	SYT17_uc002dfx.2_Silent_p.E197E|SYT17_uc002dfy.2_Silent_p.E254E|SYT17_uc002dfv.1_Silent_p.E197E	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	258	C2 1.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						TGTTTGAGGAGCGCTACACCT	0.572													19	137					0	0	1	0	0
SYT17	51760	broad.mit.edu	37	16	19195304	19195304	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19195304C>T	uc002dfw.2	+	5	1117	c.786C>T	c.(784-786)TTC>TTT	p.F262F	SYT17_uc002dfx.2_Silent_p.F201F|SYT17_uc002dfy.2_Silent_p.F258F|SYT17_uc002dfv.1_Silent_p.F201F	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	262	C2 1.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						GCTACACCTTCGAGATCCCCT	0.557													62	112					0	0	1	0	0
SYT17	51760	broad.mit.edu	37	16	19236122	19236122	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19236122C>T	uc002dfw.2	+	7	1521	c.1190C>T	c.(1189-1191)CCC>CTC	p.P397L	SYT17_uc002dfx.2_Missense_Mutation_p.P336L|SYT17_uc002dfy.2_Missense_Mutation_p.P393L|SYT17_uc002dfv.1_Missense_Mutation_p.P336L	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	397	C2 2.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						TTCAAAGTTCCCCAAGAAGAA	0.453													24	75					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19451867	19451867	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19451867C>T	uc002dgc.3	+	3	1256	c.507C>T	c.(505-507)AAC>AAT	p.N169N	TMC5_uc010vaq.1_Silent_p.N169N|TMC5_uc002dgb.3_Silent_p.N169N|TMC5_uc010var.1_Silent_p.N169N	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	169	Extracellular (Potential).					integral to membrane				skin(1)	1						CTCAGAGCAACTCTGATCATC	0.478													43	144					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19451950	19451950	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19451950C>T	uc002dgc.3	+	3	1339	c.590C>T	c.(589-591)CCA>CTA	p.P197L	TMC5_uc010vaq.1_Missense_Mutation_p.P197L|TMC5_uc002dgb.3_Missense_Mutation_p.P197L|TMC5_uc010var.1_Missense_Mutation_p.P197L	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	197	Extracellular (Potential).					integral to membrane				skin(1)	1						AGAATCAATCCATACGCAGAC	0.488													19	112					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19460865	19460865	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19460865G>A	uc002dgc.3	+	5	1709	c.960G>A	c.(958-960)GTG>GTA	p.V320V	TMC5_uc010vaq.1_Silent_p.V320V|TMC5_uc002dgb.3_Silent_p.V320V|TMC5_uc010var.1_Silent_p.V320V	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	320	Extracellular (Potential).					integral to membrane				skin(1)	1						TCCCTCCAGTGAACCCTGCTT	0.453													31	122					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19471629	19471629	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19471629G>A	uc002dgc.3	+	6	1870	c.1121G>A	c.(1120-1122)AGG>AAG	p.R374K	TMC5_uc010vaq.1_Missense_Mutation_p.R374K|TMC5_uc002dgb.3_Missense_Mutation_p.R374K|TMC5_uc010var.1_Missense_Mutation_p.R374K|TMC5_uc002dgd.1_Missense_Mutation_p.R128K|TMC5_uc002dge.3_Missense_Mutation_p.R128K|TMC5_uc002dgf.3_Missense_Mutation_p.R36K|TMC5_uc002dgg.3_Missense_Mutation_p.R15K	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	374	Extracellular (Potential).					integral to membrane				skin(1)	1						AACCAGCCAAGGACCATGGAA	0.398													17	40					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19483433	19483433	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19483433G>A	uc002dgc.3	+	11	2555	c.1806G>A	c.(1804-1806)CAG>CAA	p.Q602Q	TMC5_uc010vaq.1_Intron|TMC5_uc002dgb.3_Silent_p.Q602Q|TMC5_uc010var.1_Silent_p.Q602Q|TMC5_uc002dgd.1_Silent_p.Q356Q|TMC5_uc002dge.3_Silent_p.Q356Q|TMC5_uc002dgf.3_Silent_p.Q285Q|TMC5_uc002dgg.3_Silent_p.Q243Q	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	602	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						AGCTCCGTCAGGAGAATTCCA	0.373													24	110					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19483563	19483563	+	Missense_Mutation	SNP	G	A	A	rs142982513		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19483563G>A	uc002dgc.3	+	11	2685	c.1936G>A	c.(1936-1938)GAG>AAG	p.E646K	TMC5_uc010vaq.1_Intron|TMC5_uc002dgb.3_Missense_Mutation_p.E646K|TMC5_uc010var.1_Missense_Mutation_p.E646K|TMC5_uc002dgd.1_Missense_Mutation_p.E400K|TMC5_uc002dge.3_Missense_Mutation_p.E400K|TMC5_uc002dgf.3_Missense_Mutation_p.E329K|TMC5_uc002dgg.3_Missense_Mutation_p.E287K	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	646	Extracellular (Potential).					integral to membrane		p.E400K(1)		skin(1)	1						GTACAACTTAGAGGTAACCAA	0.552													21	39					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19492695	19492695	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19492695C>T	uc002dgc.3	+	15	3020	c.2271C>T	c.(2269-2271)ATC>ATT	p.I757I	TMC5_uc010vaq.1_Silent_p.I705I|TMC5_uc002dgb.3_Silent_p.I757I|TMC5_uc010var.1_Silent_p.I757I|TMC5_uc002dgd.1_Silent_p.I511I|TMC5_uc002dge.3_Silent_p.I511I|TMC5_uc002dgf.3_Silent_p.I440I|TMC5_uc002dgg.3_Silent_p.I398I	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	757	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						TTCACAGAATCATTGGGATGC	0.443													12	89					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19498517	19498517	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19498517C>T	uc002dgc.3	+	17	3191	c.2442C>T	c.(2440-2442)ATC>ATT	p.I814I	TMC5_uc010vaq.1_Silent_p.I762I|TMC5_uc002dgb.3_Silent_p.I814I|TMC5_uc010var.1_Silent_p.I814I|TMC5_uc002dgd.1_Silent_p.I568I|TMC5_uc002dge.3_Silent_p.I568I|TMC5_uc002dgf.3_Silent_p.I497I|TMC5_uc002dgg.3_Silent_p.I455I	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	814	Extracellular (Potential).					integral to membrane				skin(1)	1						CTCTTCAGATCAGCCTGATGA	0.587													15	49					0	0	1	0	0
CP110	9738	broad.mit.edu	37	16	19547601	19547602	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19547601_19547602CC>TT	uc002dgl.3	+	4	857_858	c.610_611CC>TT	c.(610-612)CCC>TTC	p.P204F	CP110_uc002dgk.3_Missense_Mutation_p.P204F			O43303	CP110_HUMAN	RecName: Full=Centrosomal protein of 110 kDa;          Short=Cep110;	204	CEP97 binding.				centriole replication|G2/M transition of mitotic cell cycle|regulation of cytokinesis	centriole|cytosol	protein binding				0						TTCTGATGGTCCCTTCTCAGTA	0.391													57	111					0	0	1	0	0
C16orf62	57020	broad.mit.edu	37	16	19580865	19580865	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19580865C>T	uc002dgn.1	+	3	249	c.237C>T	c.(235-237)CTC>CTT	p.L79L	C16orf62_uc002dgo.1_Silent_p.L79L|C16orf62_uc010vas.1_5'UTR|C16orf62_uc002dgm.1_Silent_p.L79L	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	79						integral to membrane				ovary(1)	1						CTGACCCCCTCTCCATGTTTG	0.612													7	50					0	0	1	0	0
C16orf62	57020	broad.mit.edu	37	16	19592859	19592859	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:19592859G>A	uc002dgn.1	+	7	535	c.523G>A	c.(523-525)GAG>AAG	p.E175K	C16orf62_uc002dgo.1_Missense_Mutation_p.E175K|C16orf62_uc002dgp.1_5'UTR|C16orf62_uc010vas.1_Missense_Mutation_p.E49K|C16orf62_uc002dgm.1_Missense_Mutation_p.E175K	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	175						integral to membrane				ovary(1)	1						TTCCCAAAAGGAGCTGTTGAA	0.493													39	157					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043470	20043470	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20043470G>A	uc002dgu.1	-	2	811	c.649C>T	c.(649-651)CGT>TGT	p.R217C	GPR139_uc010vaw.1_Missense_Mutation_p.R124C	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	217	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CCACGGAGACGAAAATTGCTC	0.507													21	70					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043700	20043700	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20043700G>A	uc002dgu.1	-	2	581	c.419C>T	c.(418-420)TCA>TTA	p.S140L	GPR139_uc010vaw.1_Missense_Mutation_p.S47L	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	140	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						GGCTGGGTATGAGACCGTGTG	0.507													32	83					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043735	20043735	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20043735G>A	uc002dgu.1	-	2	546	c.384C>T	c.(382-384)ATC>ATT	p.I128I	GPR139_uc010vaw.1_Silent_p.I35I	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	128	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						GGCAGACAGCGATATACCTGT	0.507													23	72					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043742	20043742	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20043742C>T	uc002dgu.1	-	2	539	c.377G>A	c.(376-378)AGG>AAG	p.R126K	GPR139_uc010vaw.1_Missense_Mutation_p.R33K	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	126	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						AGCGATATACCTGTCAATGGT	0.502													24	73					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043912	20043912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20043912G>A	uc002dgu.1	-	2	369	c.207C>T	c.(205-207)CTC>CTT	p.L69L	GPR139_uc010vaw.1_5'UTR	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	69	Helical; Name=2; (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CGGCAGCAGCGAGTGCCAAGA	0.473													17	33					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20328616	20328616	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20328616G>A	uc002dgv.2	-	9	1427	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F	GP2_uc002dgw.2_Silent_p.F445F|GP2_uc002dgx.2_Silent_p.F301F|GP2_uc002dgy.2_Silent_p.F298F	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	448	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						CAGCAAACATGAACATCTGAA	0.488													9	81					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20328687	20328687	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20328687G>A	uc002dgv.2	-	9	1356	c.1273C>T	c.(1273-1275)CAA>TAA	p.Q425*	GP2_uc002dgw.2_Nonsense_Mutation_p.Q422*|GP2_uc002dgx.2_Nonsense_Mutation_p.Q278*|GP2_uc002dgy.2_Nonsense_Mutation_p.Q275*	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	425	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						GAATCACGTTGATTTGAGCAG	0.478													14	68					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20329572	20329572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20329572C>T	uc002dgv.2	-	8	1280	c.1197G>A	c.(1195-1197)AGG>AGA	p.R399R	GP2_uc002dgw.2_Silent_p.R396R|GP2_uc002dgx.2_Silent_p.R252R|GP2_uc002dgy.2_Silent_p.R249R	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	399	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						CATAGCAGTTCCTCAACACCA	0.483													15	82					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20329723	20329723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20329723C>T	uc002dgv.2	-	8	1129	c.1046G>A	c.(1045-1047)GGA>GAA	p.G349E	GP2_uc002dgw.2_Missense_Mutation_p.G346E|GP2_uc002dgx.2_Missense_Mutation_p.G202E|GP2_uc002dgy.2_Missense_Mutation_p.G199E	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	349	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						AATGAACTCTCCATTCCCGTC	0.473													14	159					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20329750	20329750	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20329750G>A	uc002dgv.2	-	8	1102	c.1019C>T	c.(1018-1020)TCC>TTC	p.S340F	GP2_uc002dgw.2_Missense_Mutation_p.S337F|GP2_uc002dgx.2_Missense_Mutation_p.S193F|GP2_uc002dgy.2_Missense_Mutation_p.S190F	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	340	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						GACGTTCAGGGAACTGAGAAA	0.468													37	95					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20335524	20335524	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20335524G>A	uc002dgv.2	-	3	232	c.149C>T	c.(148-150)GCT>GTT	p.A50V	GP2_uc002dgw.2_Missense_Mutation_p.A50V|GP2_uc002dgx.2_Intron|GP2_uc002dgy.2_Intron	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	50						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						GGTGCCAGGAGCTCCGCAGTC	0.547													12	57					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20335551	20335551	+	Missense_Mutation	SNP	G	A	A	rs140222432		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20335551G>A	uc002dgv.2	-	3	205	c.122C>T	c.(121-123)TCG>TTG	p.S41L	GP2_uc002dgw.2_Missense_Mutation_p.S41L|GP2_uc002dgx.2_Intron|GP2_uc002dgy.2_Intron	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	41						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						CAGCCCATACGAACTGGCTTC	0.532													25	37					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20337703	20337703	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20337703G>A	uc002dgv.2	-	2	134	c.51C>T	c.(49-51)GCC>GCT	p.A17A	GP2_uc002dgw.2_Silent_p.A17A|GP2_uc002dgx.2_Silent_p.A17A|GP2_uc002dgy.2_Silent_p.A17A	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	17						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						AGGAGACCAAGGCCAGCCACA	0.532													18	46					0	0	1	0	0
PDILT	204474	broad.mit.edu	37	16	20376776	20376776	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20376776G>A	uc002dhc.1	-	9	1426	c.1203C>T	c.(1201-1203)GTC>GTT	p.V401V		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	401	Thioredoxin.				cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						CTTTGTCAAAGACGACTACGT	0.438													16	140					0	0	1	0	0
PDILT	204474	broad.mit.edu	37	16	20387405	20387405	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20387405G>A	uc002dhc.1	-	4	751	c.528C>T	c.(526-528)ATC>ATT	p.I176I		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	176					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						AGAAGCCAACGATGACCAAGG	0.522													15	45					0	0	1	0	0
ACSM5	54988	broad.mit.edu	37	16	20422911	20422911	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20422911C>T	uc002dhe.2	+	2	252	c.105C>T	c.(103-105)ATC>ATT	p.I35I	ACSM5_uc002dhd.1_Silent_p.I35I	NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	35					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CTCAGAAGATCGTGGCCACCT	0.582													15	37					0	0	1	0	0
ACSM5	54988	broad.mit.edu	37	16	20442548	20442548	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20442548G>A	uc002dhe.2	+	10	1360	c.1213G>A	c.(1213-1215)GAT>AAT	p.D405N		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	405					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CCAGATTGTGGATGATGAGGG	0.552													11	102					0	0	1	0	0
ACSM5	54988	broad.mit.edu	37	16	20448675	20448675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20448675C>T	uc002dhe.2	+	12	1669	c.1522C>T	c.(1522-1524)CCC>TCC	p.P508S		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	508					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CAGCCCAGACCCCATCAGGGG	0.572													9	46					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20476860	20476860	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20476860C>T	uc010bwe.2	+	4	438	c.199C>T	c.(199-201)CCA>TCA	p.P67S	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_5'UTR|ACSM2A_uc002dhf.3_Missense_Mutation_p.P67S|ACSM2A_uc002dhg.3_Missense_Mutation_p.P67S|ACSM2A_uc010vay.1_5'UTR	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	67					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						ACTCCCAAGCCCAGCCCTGTG	0.537													18	55					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20476983	20476983	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20476983C>T	uc010bwe.2	+	4	561	c.322C>T	c.(322-324)CGT>TGT	p.R108C	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.R29C|ACSM2A_uc002dhf.3_Missense_Mutation_p.R108C|ACSM2A_uc002dhg.3_Missense_Mutation_p.R108C|ACSM2A_uc010vay.1_Missense_Mutation_p.R29C	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	108					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GCGTGGGGATCGTGTGGCAGT	0.572													18	40					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20480926	20480926	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20480926G>A	uc010bwe.2	+	5	720	c.481G>A	c.(481-483)GAT>AAT	p.D161N	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.D82N|ACSM2A_uc002dhf.3_Missense_Mutation_p.D161N|ACSM2A_uc002dhg.3_Missense_Mutation_p.D161N|ACSM2A_uc010vay.1_Missense_Mutation_p.D82N	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	161					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						TGTTGCTGGGGATGAAGTCAT	0.448													41	139					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20482500	20482500	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20482500C>T	uc010bwe.2	+	6	941	c.702C>T	c.(700-702)TCC>TCT	p.S234S	ACSM2A_uc010bwd.1_Intron|ACSM2A_uc010vax.1_Silent_p.S155S|ACSM2A_uc002dhf.3_Silent_p.S234S|ACSM2A_uc002dhg.3_Silent_p.S234S|ACSM2A_uc010vay.1_Silent_p.S155S	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	234					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						CAGAACATTCCTACTCGAGCC	0.498													15	79					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20486717	20486717	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20486717G>A	uc010bwe.2	+	8	1167	c.928G>A	c.(928-930)GGT>AGT	p.G310S	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.G231S|ACSM2A_uc002dhf.3_Missense_Mutation_p.G310S|ACSM2A_uc002dhg.3_Missense_Mutation_p.G310S|ACSM2A_uc010vay.1_Missense_Mutation_p.G231S|ACSM2A_uc002dhh.3_5'Flank	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	310					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GAGTATGATGGGTGCCCCCAT	0.512													34	96					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20489922	20489922	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20489922C>T	uc010bwe.2	+	11	1443	c.1204C>T	c.(1204-1206)CTG>TTG	p.L402L	ACSM2A_uc010vax.1_Silent_p.L323L|ACSM2A_uc002dhf.3_Silent_p.L402L|ACSM2A_uc002dhg.3_Silent_p.L402L|ACSM2A_uc010vay.1_Silent_p.L323L|ACSM2A_uc002dhh.3_Silent_p.L32L	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	402					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GGGCAACGTCCTGCCCCCCGG	0.502													8	75					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20491956	20491956	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20491956G>A	uc010bwe.2	+	12	1582	c.1343G>A	c.(1342-1344)GGA>GAA	p.G448E	ACSM2A_uc010vax.1_Missense_Mutation_p.G369E|ACSM2A_uc002dhf.3_Missense_Mutation_p.G448E|ACSM2A_uc002dhg.3_Missense_Mutation_p.G448E|ACSM2A_uc010vay.1_Missense_Mutation_p.G369E|ACSM2A_uc002dhh.3_Missense_Mutation_p.G78E	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	448					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GGAGACCGGGGAATCAAAGAT	0.488													10	88					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20492183	20492183	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20492183G>A	uc010bwe.2	+	13	1688	c.1449G>A	c.(1447-1449)ATG>ATA	p.M483I	ACSM2A_uc010vax.1_Missense_Mutation_p.M404I|ACSM2A_uc002dhf.3_Missense_Mutation_p.M483I|ACSM2A_uc002dhg.3_Missense_Mutation_p.M483I|ACSM2A_uc010vay.1_Missense_Mutation_p.M404I|ACSM2A_uc002dhh.3_Missense_Mutation_p.M113I	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	483					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						ATGCACTGATGGAGCACCCTG	0.567													27	53					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20492235	20492235	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20492235C>T	uc010bwe.2	+	13	1740	c.1501C>T	c.(1501-1503)CGA>TGA	p.R501*	ACSM2A_uc010vax.1_Nonsense_Mutation_p.R422*|ACSM2A_uc002dhf.3_Nonsense_Mutation_p.R501*|ACSM2A_uc002dhg.3_Nonsense_Mutation_p.R501*|ACSM2A_uc010vay.1_Nonsense_Mutation_p.R422*|ACSM2A_uc002dhh.3_Nonsense_Mutation_p.R131*	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	501		Coenzyme A.			fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						AGACCCCGTCCGAGGAGAGGT	0.448													13	39					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20497945	20497945	+	Missense_Mutation	SNP	G	A	A	rs148142047		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20497945G>A	uc010bwe.2	+	15	1918	c.1679G>A	c.(1678-1680)CGA>CAA	p.R560Q	ACSM2A_uc002dhf.3_Missense_Mutation_p.R560Q|ACSM2A_uc002dhg.3_Missense_Mutation_p.R560Q|ACSM2A_uc010vay.1_Missense_Mutation_p.R481Q|ACSM2A_uc002dhh.3_Missense_Mutation_p.R190Q|uc002dhi.1_5'Flank	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	560					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						AAAATTCAACGAGCCAAGCTT	0.473													56	180					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20548670	20548670	+	Silent	SNP	C	T	T	rs71811918		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20548670C>T	uc002dhj.3	-	15	1854	c.1644G>A	c.(1642-1644)TTG>TTA	p.L548L	ACSM2B_uc002dhk.3_Silent_p.L548L	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	548					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TGGGCAGGTTCAAGACAAACT	0.493													85	162					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20554463	20554463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20554463G>A	uc002dhj.3	-	12	1613	c.1403C>T	c.(1402-1404)TCC>TTC	p.S468F	ACSM2B_uc002dhk.3_Missense_Mutation_p.S468F|ACSM2B_uc010bwf.1_Missense_Mutation_p.S468F	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	468					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TCACCCGCTGGAGTTAATGAT	0.512													68	385					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20554523	20554523	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20554523C>T	uc002dhj.3	-	12	1553	c.1343G>A	c.(1342-1344)GGA>GAA	p.G448E	ACSM2B_uc002dhk.3_Missense_Mutation_p.G448E|ACSM2B_uc010bwf.1_Missense_Mutation_p.G448E	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	448					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						ATCTTTGATTCCCCGGTCTCC	0.488													15	309					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20556494	20556494	+	Silent	SNP	G	A	A	rs141823499		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20556494G>A	uc002dhj.3	-	11	1476	c.1266C>T	c.(1264-1266)ATC>ATT	p.I422I	ACSM2B_uc002dhk.3_Silent_p.I422I|ACSM2B_uc010bwf.1_Silent_p.I422I	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	422					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						AGCCAGAGAAGATGCCTATAG	0.517													22	80					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20559433	20559433	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20559433C>T	uc002dhj.3	-	9	1259	c.1049G>A	c.(1048-1050)AGG>AAG	p.R350K	ACSM2B_uc002dhk.3_Missense_Mutation_p.R350K|ACSM2B_uc010bwf.1_Missense_Mutation_p.R350K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	350					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TGTCTGGGCCCTCCAGTTCTC	0.512													45	205					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20565115	20565115	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20565115C>T	uc002dhj.3	-	6	934	c.724G>A	c.(724-726)GCC>ACC	p.A242T	ACSM2B_uc002dhk.3_Missense_Mutation_p.A242T|ACSM2B_uc010bwf.1_Missense_Mutation_p.A242T	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	242					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TCCATCTTGGCCTTGAGGCCC	0.517													45	92					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20565171	20565172	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20565171_20565172CC>TT	uc002dhj.3	-	6	877_878	c.667_668GG>AA	c.(667-669)GGG>AAG	p.G223K	ACSM2B_uc002dhk.3_Missense_Mutation_p.G223K|ACSM2B_uc010bwf.1_Missense_Mutation_p.G223K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	223	ATP (By similarity).				fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						ACCACTGGTCCCACTAGTGAAG	0.51													11	89					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20576124	20576124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20576124C>T	uc002dhj.3	-	3	254	c.44G>A	c.(43-45)GGT>GAT	p.G15D	ACSM2B_uc002dhk.3_Missense_Mutation_p.G15D|ACSM2B_uc010bwf.1_Missense_Mutation_p.G15D	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	15					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CATCTGAGTACCCCACAGGGT	0.493													16	55					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20634826	20634826	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20634826C>T	uc002dhm.1	-	13	1784	c.1716G>A	c.(1714-1716)AAG>AAA	p.K572K	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.K572K	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	572					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GACCAGTCTCCTTTTTCCGAA	0.493													17	67					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20634834	20634834	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20634834G>A	uc002dhm.1	-	13	1776	c.1708C>T	c.(1708-1710)CGG>TGG	p.R570W	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.R570W	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	570					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TCCTTTTTCCGAAGTTCCTTC	0.488													30	63					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20636757	20636757	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20636757C>T	uc002dhm.1	-	11	1583	c.1515G>A	c.(1513-1515)CCG>CCA	p.P505P	ACSM1_uc002dhn.1_Intron|ACSM1_uc010bwg.1_Silent_p.P505P	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	505					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CCCCTCGAATCGGGTCTGGGC	0.602													19	16					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20702496	20702496	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20702496C>T	uc002dhm.1	-	1	83	c.15G>A	c.(13-15)ATG>ATA	p.M5I	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.M5I	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	5					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TCCGGAACCTCATTAGCCACT	0.527													46	121					0	0	1	0	0
ACSM3	6296	broad.mit.edu	37	16	20803324	20803324	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20803324G>A	uc002dhr.2	+	11	1514	c.1327G>A	c.(1327-1329)GAT>AAT	p.D443N	ACSM3_uc010vba.1_Missense_Mutation_p.D472N|ERI2_uc002dhs.2_Intron	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	443					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						TGTTTTGCAGGATAATCCTTC	0.299													38	66					0	0	1	0	0
DCUN1D3	123879	broad.mit.edu	37	16	20871407	20871407	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20871407G>A	uc002dhz.2	-	3	857	c.716C>T	c.(715-717)TCC>TTC	p.S239F	ERI2_uc002dht.3_Intron	NM_173475	NP_775746	Q8IWE4	DCNL3_HUMAN	DCN1, defective in cullin neddylation 1, domain	239	DCUN1.				negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|positive regulation of apoptosis|response to gamma radiation|response to UV-C	perinuclear region of cytoplasm				ovary(2)	2				GBM - Glioblastoma multiforme(48;0.249)		AGTGTCCCGGGAGATGCCCTT	0.507													22	101					0	0	1	0	0
DCUN1D3	123879	broad.mit.edu	37	16	20873685	20873685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20873685G>A	uc002dhz.2	-	2	317	c.176C>T	c.(175-177)GCC>GTC	p.A59V	ERI2_uc002dht.3_Intron	NM_173475	NP_775746	Q8IWE4	DCNL3_HUMAN	DCN1, defective in cullin neddylation 1, domain	59					negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|positive regulation of apoptosis|response to gamma radiation|response to UV-C	perinuclear region of cytoplasm				ovary(2)	2				GBM - Glioblastoma multiforme(48;0.249)		GGCAGCCTCGGCCTTCTTGGT	0.597													83	159					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20955880	20955880	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20955880G>A	uc010vbe.1	-	58	11449	c.11449C>T	c.(11449-11451)CTG>TTG	p.L3817L	DNAH3_uc010vbd.1_Silent_p.L1252L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3817					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCCTCAAACAGCTGGTTGGTT	0.547													24	54					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20966148	20966148	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20966148G>A	uc010vbe.1	-	55	11058	c.11058C>T	c.(11056-11058)AAC>AAT	p.N3686N	DNAH3_uc010vbd.1_Silent_p.N1121N	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3686	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GGGGGCCGAAGTTTCTTCTCT	0.488													34	127					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20974808	20974808	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20974808G>A	uc010vbe.1	-	53	10398	c.10398C>T	c.(10396-10398)TTC>TTT	p.F3466F	DNAH3_uc010vbd.1_Silent_p.F901F	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3466					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATCCTTGAGAGAACTTCCAAG	0.522													5	55					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20974824	20974824	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20974824G>A	uc010vbe.1	-	53	10382	c.10382C>T	c.(10381-10383)CCT>CTT	p.P3461L	DNAH3_uc010vbd.1_Missense_Mutation_p.P896L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3461					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCAAGACCCAGGGAGTTGCTC	0.532													9	53					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20975341	20975341	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20975341C>T	uc010vbe.1	-	53	9865	c.9865G>A	c.(9865-9867)GAG>AAG	p.E3289K	DNAH3_uc010vbd.1_Missense_Mutation_p.E724K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3289					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATCCGAGTCTCGTCAATCTGC	0.498													45	106					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20975383	20975383	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20975383C>T	uc010vbe.1	-	53	9823	c.9823G>A	c.(9823-9825)GAG>AAG	p.E3275K	DNAH3_uc010vbd.1_Missense_Mutation_p.E710K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3275	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTCTGTTTCTCTGAGATCTCT	0.478													48	132					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20975411	20975411	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20975411G>A	uc010vbe.1	-	53	9795	c.9795C>T	c.(9793-9795)TCC>TCT	p.S3265S	DNAH3_uc010vbd.1_Silent_p.S700S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3265	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity	p.S3265F(1)		ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCACTTTGGAGGAGGACAGAA	0.468													43	135					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20975912	20975912	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20975912C>T	uc010vbe.1	-	53	9294	c.9294G>A	c.(9292-9294)GCG>GCA	p.A3098A	DNAH3_uc010vbd.1_Silent_p.A533A	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3098	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCAGTTTATTCGCCTTCTCCA	0.468													43	107					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20976098	20976098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20976098G>A	uc010vbe.1	-	53	9108	c.9108C>T	c.(9106-9108)TTC>TTT	p.F3036F	DNAH3_uc010vbd.1_Silent_p.F471F	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3036					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGAAGTCACTGAAGCCAGGGA	0.522													17	40					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20976196	20976196	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20976196C>T	uc010vbe.1	-	53	9010	c.9010G>A	c.(9010-9012)GGA>AGA	p.G3004R	DNAH3_uc010vbd.1_Missense_Mutation_p.G439R	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3004					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCCACAGTTCCTGAGGACAGC	0.537													23	58					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20976700	20976700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20976700C>T	uc010vbe.1	-	53	8506	c.8506G>A	c.(8506-8508)GAT>AAT	p.D2836N	DNAH3_uc010vbd.1_Missense_Mutation_p.D271N	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2836	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AATTTCAGATCCCCAAGAATC	0.413													19	91					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20990669	20990669	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20990669C>T	uc010vbe.1	-	50	8059	c.8059G>A	c.(8059-8061)GAC>AAC	p.D2687N	DNAH3_uc010vbd.1_Missense_Mutation_p.D122N	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2687	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCTGCAAAGTCGAGTTTCTGC	0.512													13	44					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20990797	20990797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20990797C>T	uc010vbe.1	-	50	7931	c.7931G>A	c.(7930-7932)CGA>CAA	p.R2644Q	DNAH3_uc010vbd.1_Missense_Mutation_p.R79Q	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2644	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GTTGTGTCTTCGAAGTTTGTT	0.478													32	67					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20994161	20994161	+	Missense_Mutation	SNP	G	A	A	rs145048646		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20994161G>A	uc010vbe.1	-	49	7741	c.7741C>T	c.(7741-7743)CCT>TCT	p.P2581S	DNAH3_uc010vbd.1_Missense_Mutation_p.P16S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2581	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATCAGCGAAGGGAACATCCGC	0.488													36	79					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20996624	20996624	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20996624G>A	uc010vbe.1	-	48	7440	c.7440C>T	c.(7438-7440)GTC>GTT	p.V2480V	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2480	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGGCCACACCGACCTGCAGTA	0.493													28	20					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20996782	20996782	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20996782C>T	uc010vbe.1	-	48	7282	c.7282G>A	c.(7282-7284)GGC>AGC	p.G2428S	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2428	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGCAGGTGGCCTTTGTCCTGC	0.542													21	33					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20999045	20999045	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:20999045C>T	uc010vbe.1	-	46	6852	c.6852G>A	c.(6850-6852)GGG>GGA	p.G2284G	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2284	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACAGCAGGACCCCTTGAATCA	0.453													12	46					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21035984	21035984	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21035984C>T	uc010vbe.1	-	39	5580	c.5580G>A	c.(5578-5580)TGG>TGA	p.W1860*		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1860	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCAGGGGCTTCCAGCCTAGTT	0.507													4	47					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21042517	21042517	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21042517C>T	uc010vbe.1	-	37	5289	c.5289G>A	c.(5287-5289)GTG>GTA	p.V1763V		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1763	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACTCGTGGCTCACTTGGTCAA	0.522													21	67					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21063133	21063133	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21063133G>A	uc010vbe.1	-	29	4096	c.4096C>T	c.(4096-4098)CAA>TAA	p.Q1366*		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1366	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GAGATCCATTGGAAATCATTC	0.527													43	91					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21086851	21086851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21086851C>T	uc010vbe.1	-	21	3001	c.3001G>A	c.(3001-3003)GAA>AAA	p.E1001K		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1001	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGAGAGTATTCCTTGCTGGCA	0.463													18	67					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21098223	21098223	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21098223G>A	uc010vbe.1	-	19	2824	c.2824C>T	c.(2824-2826)CCC>TCC	p.P942S		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	942	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CTGAGGATGGGAATGTACTGC	0.512													51	208					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21122984	21122984	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21122984G>A	uc010vbe.1	-	14	2062	c.2062C>T	c.(2062-2064)CAA>TAA	p.Q688*	DNAH3_uc002die.2_Nonsense_Mutation_p.Q628*	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	688	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACTTGGAATTGAATCAGATGG	0.433													27	95					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21132126	21132126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21132126C>T	uc010vbe.1	-	11	1634	c.1634G>A	c.(1633-1635)CGG>CAG	p.R545Q	DNAH3_uc002die.2_Intron	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	545	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CACACATTGCCGATCAGCAGC	0.493													11	27					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21136525	21136525	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21136525C>T	uc010vbe.1	-	9	1375	c.1375G>A	c.(1375-1377)GAC>AAC	p.D459N	DNAH3_uc002die.2_Missense_Mutation_p.D430N	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	459	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GAAACGAGGTCCTCAAGTGAC	0.453													14	88					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21136605	21136605	+	Missense_Mutation	SNP	C	T	T	rs139455188	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21136605C>T	uc010vbe.1	-	9	1295	c.1295G>A	c.(1294-1296)CGA>CAA	p.R432Q	DNAH3_uc002die.2_Missense_Mutation_p.R403Q	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	432	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CTCAATGTTTCGACTTGAGTC	0.473													21	84					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21145600	21145600	+	Silent	SNP	C	T	T	rs141077519		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21145600C>T	uc010vbe.1	-	7	1062	c.1062G>A	c.(1060-1062)CTG>CTA	p.L354L	DNAH3_uc002die.2_Silent_p.L325L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	354	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACAGTTCTTTCAGCCTGAGCA	0.527													29	102					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21145707	21145707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21145707G>A	uc010vbe.1	-	7	955	c.955C>T	c.(955-957)CCT>TCT	p.P319S	DNAH3_uc002die.2_Missense_Mutation_p.P290S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	319	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACTCTTTGAGGAAACAAGCGG	0.527													34	127					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21208825	21208825	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21208825C>T	uc002dii.2	-	19	2214	c.2214G>A	c.(2212-2214)GAG>GAA	p.E738E	ZP2_uc010bwn.1_Silent_p.E768E	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	738	Cytoplasmic (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		CAGTCCTTTTCTCGTACAGGT	0.453													11	77					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21211172	21211172	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21211172C>T	uc002dii.2	-	15	1722	c.1722G>A	c.(1720-1722)CAG>CAA	p.Q574Q	ZP2_uc010bwn.1_Silent_p.Q604Q	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	574	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		GGAAGGTGGTCTGGTAGTTGT	0.493													15	66					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21213314	21213314	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21213314C>T	uc002dii.2	-	12	1318	c.1318G>A	c.(1318-1320)GAA>AAA	p.E440K	ZP2_uc010bwn.1_Missense_Mutation_p.E479K	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	440	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		GCATGTATTTCGTTTTCATAG	0.393													32	113					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21213507	21213507	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21213507G>T	uc002dii.2	-	11	1205	c.1205C>A	c.(1204-1206)TCC>TAC	p.S402Y	ZP2_uc010bwn.1_Missense_Mutation_p.S441Y	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	402	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		AGGCTGGCAGGATGAGTTTCC	0.542													12	39					7.03913e-09	7.06053e-09	1	1	0
ZP2	7783	broad.mit.edu	37	16	21214532	21214532	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21214532G>A	uc002dii.2	-	10	1013	c.1013C>T	c.(1012-1014)TCA>TTA	p.S338L	ZP2_uc010bwn.1_Missense_Mutation_p.S377L	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	338	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		CAGCTTGAGTGAAGCTAAGTA	0.463													21	81					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21215530	21215530	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21215530G>A	uc002dii.2	-	9	793	c.793C>T	c.(793-795)CCT>TCT	p.P265S	ZP2_uc010bwn.1_Missense_Mutation_p.P304S|ZP2_uc010bwo.2_Missense_Mutation_p.P304S	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	265	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		CAGGTCACAGGATCTAGAAGG	0.468													21	75					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21221496	21221496	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21221496C>T	uc002dii.2	-	3	169	c.169G>A	c.(169-171)GAA>AAA	p.E57K	ZP2_uc010bwn.1_Missense_Mutation_p.E96K|ZP2_uc010bwo.2_Missense_Mutation_p.E96K	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	57	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		ATTTCCCTTTCATCGCAAGTG	0.478													25	78					0	0	1	0	0
ANKS4B	257629	broad.mit.edu	37	16	21261887	21261887	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21261887G>A	uc010bwp.1	+	2	1043	c.1000G>A	c.(1000-1002)GAT>AAT	p.D334N	CRYM_uc010bwq.1_Intron	NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	334										ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		GTGGGATGACGATGAAGTGGA	0.517													17	32					0	0	1	0	0
OTOA	146183	broad.mit.edu	37	16	21690356	21690356	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21690356G>A	uc002djh.2	+	3	122	c.121_splice	c.e3-1	p.E41_splice	uc002diq.3_Intron	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1						sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		TTGCCTTTTAGGAAGAAATAA	0.383													24	200					0	0	1	0	0
OTOA	146183	broad.mit.edu	37	16	21702955	21702955	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21702955G>A	uc002djh.2	+	8	687	c.686G>A	c.(685-687)AGA>AAA	p.R229K	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.R150K	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	229					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		CATTCCCAGAGAGCTCTCTAT	0.488													10	51					0	0	1	0	0
OTOA	146183	broad.mit.edu	37	16	21709108	21709108	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21709108C>T	uc002djh.2	+	9	753	c.752C>T	c.(751-753)TCA>TTA	p.S251L	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.S172L	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	251					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GACTCTGCTTCATGGGTCAGT	0.323													28	88					0	0	1	0	0
OTOA	146183	broad.mit.edu	37	16	21712328	21712328	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21712328G>A	uc002djh.2	+	10	961	c.960G>A	c.(958-960)AGG>AGA	p.R320R	uc002diq.3_Intron|OTOA_uc010vbj.1_Silent_p.R241R	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	320					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		TTAACATGAGGAATACCTCCA	0.522													17	46					0	0	1	0	0
OTOA	146183	broad.mit.edu	37	16	21739650	21739650	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21739650C>T	uc002djh.2	+	19	2106	c.2105C>T	c.(2104-2106)TCC>TTC	p.S702F	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.S623F|OTOA_uc002dji.2_Missense_Mutation_p.S378F|OTOA_uc010vbk.1_Missense_Mutation_p.S350F	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	716					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		AGGGGGATCTCCCCCAGGGCT	0.577													18	54					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	21858755	21858755	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:21858755G>A	uc002djr.3	-	4	410	c.228C>T	c.(226-228)ACC>ACT	p.T76T	uc002djs.3_RNA|uc002djq.3_Silent_p.T57T|uc010vbn.1_Silent_p.T76T	NM_130464	NP_569731			nuclear pore complex interacting protein-like 3																		CTATCCAGAGGGTAATGACAA	0.353													14	93					0	0	1	0	0
VWA3A	146177	broad.mit.edu	37	16	22130333	22130333	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:22130333C>T	uc010vbq.1	+	12	1197	c.1101C>T	c.(1099-1101)ACC>ACT	p.T367T	VWA3A_uc010bxd.2_5'Flank|VWA3A_uc010bxc.2_Silent_p.T354T	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	367						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		AGGCGCTCACCTGCACCATGG	0.617													5	10					0	0	1	0	0
VWA3A	146177	broad.mit.edu	37	16	22132409	22132409	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:22132409G>A	uc010vbq.1	+	13	1333	c.1237G>A	c.(1237-1239)GTC>ATC	p.V413I	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Missense_Mutation_p.V400I	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	413						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		GTGGCTTAAGGTCAATGGTCT	0.423													10	76					0	0	1	0	0
VWA3A	146177	broad.mit.edu	37	16	22149821	22149821	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:22149821G>A	uc010vbq.1	+	22	2376	c.2280G>A	c.(2278-2280)CTG>CTA	p.L760L	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Silent_p.L768L	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	760						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		CCGTCCCCCTGGGGGCCAGAA	0.527													4	34					0	0	1	0	0
VWA3A	146177	broad.mit.edu	37	16	22157590	22157590	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:22157590G>A	uc010vbq.1	+	27	2860	c.2764G>A	c.(2764-2766)GAG>AAG	p.E922K	VWA3A_uc010bxd.2_RNA|VWA3A_uc002dkg.3_5'UTR|VWA3A_uc010bxe.1_5'UTR	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	922						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		GACGCCCAGGGAGATGGAGGT	0.587													3	24					0	0	1	0	0
VWA3A	146177	broad.mit.edu	37	16	22163861	22163861	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:22163861C>T	uc010vbq.1	+	31	3407	c.3311C>T	c.(3310-3312)GCT>GTT	p.A1104V	VWA3A_uc010bxd.2_RNA|VWA3A_uc002dkg.3_Missense_Mutation_p.A182V|VWA3A_uc010bxe.1_Missense_Mutation_p.A206V	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	1104	VWFA 2.					extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		AGAAAGCTGGCTTCCTTCACC	0.567													7	14					0	0	1	0	0
CDR2	1039	broad.mit.edu	37	16	22358533	22358533	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:22358533G>A	uc002dkn.2	-	5	1426	c.1118C>T	c.(1117-1119)TCC>TTC	p.S373F		NM_001802	NP_001793	Q01850	CDR2_HUMAN	cerebellar degeneration-related protein 2	373	Potential.					nucleus	protein binding			skin(1)	1				GBM - Glioblastoma multiforme(48;0.0188)		GTGTGACAGGGAGTCCTGTTC	0.592													15	79					0	0	1	0	0
USP31	57478	broad.mit.edu	37	16	23079830	23079830	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23079830G>A	uc002dll.2	-	16	3596	c.3596C>T	c.(3595-3597)TCC>TTC	p.S1199F	USP31_uc002dlk.2_Missense_Mutation_p.S471F|USP31_uc010vca.1_Missense_Mutation_p.S502F|USP31_uc010bxm.2_Missense_Mutation_p.S487F	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	1199	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		GGCCATGGAGGAGCTCCGCAC	0.642													38	89					0	0	1	0	0
USP31	57478	broad.mit.edu	37	16	23080255	23080255	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23080255G>A	uc002dll.2	-	16	3171	c.3171C>T	c.(3169-3171)TCC>TCT	p.S1057S	USP31_uc002dlk.2_Silent_p.S329S|USP31_uc010vca.1_Silent_p.S360S|USP31_uc010bxm.2_Silent_p.S345S	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	1057	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		GAGAAGAAGGGGATGTACTTG	0.547													22	78					0	0	1	0	0
USP31	57478	broad.mit.edu	37	16	23080766	23080766	+	Missense_Mutation	SNP	G	A	A	rs138556206		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23080766G>A	uc002dll.2	-	16	2660	c.2660C>T	c.(2659-2661)TCG>TTG	p.S887L	USP31_uc002dlk.2_Missense_Mutation_p.S159L|USP31_uc010vca.1_Missense_Mutation_p.S190L|USP31_uc010bxm.2_Missense_Mutation_p.S175L	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	887	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		GTGAATTGGCGAATCCCCTGA	0.517													4	33					0	0	1	0	0
USP31	57478	broad.mit.edu	37	16	23083503	23083503	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23083503G>A	uc002dll.2	-	15	2351	c.2351C>T	c.(2350-2352)TCC>TTC	p.S784F	USP31_uc002dlk.2_Missense_Mutation_p.S56F|USP31_uc010vca.1_Missense_Mutation_p.S87F|USP31_uc010bxm.2_Missense_Mutation_p.S72F	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	784	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		TTCACACAGGGAAGAACTTGT	0.622													17	52					0	0	1	0	0
USP31	57478	broad.mit.edu	37	16	23117572	23117572	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23117572G>A	uc002dll.2	-	4	915	c.915C>T	c.(913-915)TTC>TTT	p.F305F		NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	305					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		AAATGCAAAGGAAAGGATCAA	0.383													19	59					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23197734	23197734	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23197734C>T	uc002dlm.1	+	2	281	c.142C>T	c.(142-144)CGC>TGC	p.R48C		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	48	Cytoplasmic (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	CGTGGTGTCCCGCGGCCGTCT	0.637													10	46					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23203759	23203759	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23203759G>A	uc002dlm.1	+	4	844	c.705G>A	c.(703-705)ATG>ATA	p.M235I		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	235	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TACACTACATGAACATCATGG	0.488													11	91					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23224167	23224167	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23224167G>T	uc002dlm.1	+	10	1522	c.1383G>T	c.(1381-1383)GAG>GAT	p.E461D		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	461	Extracellular (By similarity).			EWT -> DGH (in Ref. 5; AAC50758).	excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	GCTTTAAAGAGTGGACACTAA	0.592													10	72					1.58986e-06	1.59283e-06	1	1	0
SCNN1G	6340	broad.mit.edu	37	16	23226080	23226080	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23226080G>A	uc002dlm.1	+	12	1680	c.1541G>A	c.(1540-1542)AGA>AAA	p.R514K		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	514	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	CTGAACCAGAGATCCATCATG	0.502													18	37					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23226490	23226490	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23226490C>T	uc002dlm.1	+	13	1789	c.1650C>T	c.(1648-1650)ATC>ATT	p.I550I		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	550	Helical; (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TCGAGATCATCGAGGTCTTCT	0.557													15	64					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23226608	23226608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23226608G>A	uc002dlm.1	+	13	1907	c.1768G>A	c.(1768-1770)GGC>AGC	p.G590S		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	590	Cytoplasmic (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TAGCCCACAGGGCCAGGACAA	0.597													35	105					0	0	1	0	0
SCNN1B	6338	broad.mit.edu	37	16	23379202	23379202	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23379202C>T	uc002dln.2	+	5	978	c.802C>T	c.(802-804)CAC>TAC	p.H268Y		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	268	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	CTTCTACCCTCACTATGGCAA	0.527													35	132					0	0	1	0	0
SCNN1B	6338	broad.mit.edu	37	16	23391470	23391470	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23391470G>A	uc002dln.2	+	12	1698	c.1522G>A	c.(1522-1524)GAA>AAA	p.E508K		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	508	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	TCGCACCATTGAAGAATCAGC	0.542													19	81					0	0	1	0	0
COG7	91949	broad.mit.edu	37	16	23409421	23409421	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23409421G>A	uc002dlo.2	-	14	2021	c.1833C>T	c.(1831-1833)ACC>ACT	p.T611T		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	611					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		CATCTGTGAGGGTTTCTCCGA	0.532													14	37					0	0	1	0	0
COG7	91949	broad.mit.edu	37	16	23428365	23428365	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23428365G>A	uc002dlo.2	-	9	1403	c.1215C>T	c.(1213-1215)GCC>GCT	p.A405A		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	405					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		ATCTGTCAACGGCTGCAGACG	0.562													13	50					0	0	1	0	0
GGA2	23062	broad.mit.edu	37	16	23492068	23492068	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23492068G>A	uc002dlq.2	-	10	980	c.904C>T	c.(904-906)CTC>TTC	p.L302F	GGA2_uc010bxo.1_RNA	NM_015044	NP_055859	Q9UJY4	GGA2_HUMAN	ADP-ribosylation factor binding protein 2	302	GAT.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|clathrin-coated vesicle|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.0386)		TGGGTGAGGAGGTCATTTGCC	0.498													28	56					0	0	1	0	0
PALB2	79728	broad.mit.edu	37	16	23619259	23619259	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23619259G>A	uc002dlx.1	-	12	3476	c.3276C>T	c.(3274-3276)CTC>CTT	p.L1092L		NM_024675	NP_078951	Q86YC2	PALB2_HUMAN	partner and localizer of BRCA2	1092	Interaction with RAD51 and BRCA2.|WD 5.				double-strand break repair via homologous recombination	nucleoplasm	DNA binding|protein binding			lung(3)|breast(3)|ovary(2)|skin(1)|kidney(1)|pancreas(1)	11				GBM - Glioblastoma multiforme(48;0.0167)		TAATCACAATGAGCTGAAACA	0.483			F|N|Mis			Wilms tumor|medulloblastoma|AML ,breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia_type_N|Fanconi_Anemia|PALB2-associated_Familial_Breast_and_Pancreatic_Cancer|Pancreatic_Cancer_Familial_Clustering_of				14	56					0	0	1	0	0
PALB2	79728	broad.mit.edu	37	16	23647609	23647609	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23647609G>A	uc002dlx.1	-	4	458	c.258C>T	c.(256-258)ACC>ACT	p.T86T		NM_024675	NP_078951	Q86YC2	PALB2_HUMAN	partner and localizer of BRCA2	86	Interaction with RAD51.|Required for its oligomerization and is important for its focal concentration at DNA damage sites.|Interaction with BRCA1.				double-strand break repair via homologous recombination	nucleoplasm	DNA binding|protein binding			lung(3)|breast(3)|ovary(2)|skin(1)|kidney(1)|pancreas(1)	11				GBM - Glioblastoma multiforme(48;0.0167)		CATCAAGATGGGTTTTGATGT	0.308			F|N|Mis			Wilms tumor|medulloblastoma|AML ,breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia_type_N|Fanconi_Anemia|PALB2-associated_Familial_Breast_and_Pancreatic_Cancer|Pancreatic_Cancer_Familial_Clustering_of				9	16					0	0	1	0	0
ERN2	10595	broad.mit.edu	37	16	23713758	23713758	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23713758C>T	uc002dma.3	-	10	1347	c.1178G>A	c.(1177-1179)AGA>AAA	p.R393K	ERN2_uc010bxp.2_Missense_Mutation_p.R393K|ERN2_uc010bxq.1_Missense_Mutation_p.R201K	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	345	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		TGAGGGGTATCTAACAGCAGT	0.582													51	140					0	0	1	0	0
ERN2	10595	broad.mit.edu	37	16	23716293	23716293	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:23716293G>A	uc002dma.3	-	8	1078	c.909C>T	c.(907-909)TTC>TTT	p.F303F	ERN2_uc010bxp.2_Silent_p.F303F|ERN2_uc010bxq.1_Silent_p.F111F	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	255	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		GGAGGGCGAGGAAATGCAGAG	0.662													15	66					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24366209	24366209	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24366209C>T	uc002dmf.2	+	3	1551	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	117	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		TGCTGTTCTTCGGCGGGCTCT	0.617													17	42					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24372859	24372859	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24372859G>A	uc002dmf.2	+	4	1823	c.623G>A	c.(622-624)CGA>CAA	p.R208Q		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	208					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CAGCAGTTACGAGCCAAATCC	0.488													29	103					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24373028	24373028	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24373028G>A	uc002dmf.2	+	4	1992	c.792G>A	c.(790-792)ATG>ATA	p.M264I		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	264					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		ACATCTCGATGTTCACCCTCT	0.587													23	113					0	0	1	0	0
RBBP6	5930	broad.mit.edu	37	16	24573359	24573359	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24573359C>T	uc002dmh.2	+	10	2206	c.1166C>T	c.(1165-1167)TCT>TTT	p.S389F	RBBP6_uc010vcb.1_Missense_Mutation_p.S256F|RBBP6_uc002dmi.2_Missense_Mutation_p.S389F|RBBP6_uc010bxr.2_Missense_Mutation_p.S389F|RBBP6_uc002dmk.2_Missense_Mutation_p.S256F	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	389					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		TCATTAACTTCTAATCAGTCT	0.438													8	144					0	0	1	0	0
RBBP6	5930	broad.mit.edu	37	16	24578591	24578591	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24578591C>T	uc002dmh.2	+	15	2757	c.1717C>T	c.(1717-1719)CCT>TCT	p.P573S	RBBP6_uc010vcb.1_Missense_Mutation_p.P440S|RBBP6_uc002dmi.2_Missense_Mutation_p.P573S|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.P440S	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	573					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		ccatacacttcctctccctcc	0.303													18	192					0	0	1	0	0
RBBP6	5930	broad.mit.edu	37	16	24578598	24578598	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24578598C>T	uc002dmh.2	+	15	2764	c.1724C>T	c.(1723-1725)CCT>CTT	p.P575L	RBBP6_uc010vcb.1_Missense_Mutation_p.P442L|RBBP6_uc002dmi.2_Missense_Mutation_p.P575L|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.P442L	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	575					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		cttcctctccctccgggtgtt	0.308													45	179					0	0	1	0	0
TNRC6A	27327	broad.mit.edu	37	16	24802755	24802755	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24802755C>T	uc002dmm.2	+	6	2906	c.2792C>T	c.(2791-2793)TCT>TTT	p.S931F	TNRC6A_uc010bxs.2_Missense_Mutation_p.S678F|TNRC6A_uc010vcc.1_Missense_Mutation_p.S678F|TNRC6A_uc002dmn.2_Missense_Mutation_p.S678F|TNRC6A_uc002dmo.2_Missense_Mutation_p.S678F	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	931	Sufficient for interaction with EIF2C1 and EIF2C4.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		TCTAATCAGTCTCTAGGTTGG	0.468													26	57					0	0	1	0	0
SLC5A11	115584	broad.mit.edu	37	16	24902212	24902212	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24902212G>A	uc002dmu.2	+	9	919	c.687G>A	c.(685-687)ATG>ATA	p.M229I	SLC5A11_uc002dms.2_Missense_Mutation_p.M165I|SLC5A11_uc010vcd.1_Missense_Mutation_p.M194I|SLC5A11_uc002dmt.2_Intron|SLC5A11_uc010vce.1_Missense_Mutation_p.M159I|SLC5A11_uc010bxt.2_Missense_Mutation_p.M165I	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	229	Helical; (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		TTGGTGGGATGGAAGGACTGA	0.547													53	164					0	0	1	0	0
SLC5A11	115584	broad.mit.edu	37	16	24909430	24909430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24909430G>A	uc002dmu.2	+	10	1238	c.1006G>A	c.(1006-1008)GAT>AAT	p.D336N	SLC5A11_uc002dms.2_Missense_Mutation_p.D272N|SLC5A11_uc010vcd.1_Missense_Mutation_p.D301N|SLC5A11_uc002dmt.2_Missense_Mutation_p.R203K|SLC5A11_uc010vce.1_Missense_Mutation_p.D266N|SLC5A11_uc010bxt.2_Missense_Mutation_p.D272N	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	336	Extracellular (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		CCTCTTCCCAGGTGAGAACAC	0.493													6	65					0	0	1	0	0
SLC5A11	115584	broad.mit.edu	37	16	24918476	24918476	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:24918476G>A	uc002dmu.2	+	12	1477	c.1245G>A	c.(1243-1245)AAG>AAA	p.K415K	SLC5A11_uc002dms.2_Silent_p.K351K|SLC5A11_uc010vcd.1_Silent_p.K380K|SLC5A11_uc002dmt.2_Silent_p.K259K|SLC5A11_uc010vce.1_Silent_p.K345K|SLC5A11_uc010bxt.2_Silent_p.K351K|SLC5A11_uc002dmv.2_Silent_p.K38K	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	415	Cytoplasmic (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		CATCTGAGAAGGAGCTCATGA	0.602													25	125					0	0	1	0	0
LCMT1	51451	broad.mit.edu	37	16	25151534	25151534	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:25151534C>T	uc002dnx.1	+	4	528	c.370C>T	c.(370-372)CCA>TCA	p.P124S	LCMT1_uc002dny.1_Missense_Mutation_p.P124S|LCMT1_uc002dnz.1_Missense_Mutation_p.P24S|LCMT1_uc002doa.1_Missense_Mutation_p.P24S	NM_016309	NP_057393	Q9UIC8	LCMT1_HUMAN	leucine carboxyl methyltransferase 1 isoform a	124							protein binding|protein C-terminal carboxyl O-methyltransferase activity|S-adenosylmethionine-dependent methyltransferase activity				0				GBM - Glioblastoma multiforme(48;0.0336)	L-Leucine(DB00149)	GGTTGACTTTCCAATGATTGT	0.403													5	9					0	0	1	0	0
AQP8	343	broad.mit.edu	37	16	25228586	25228586	+	Missense_Mutation	SNP	G	A	A	rs61733055	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:25228586G>A	uc002doc.2	+	2	162	c.80G>A	c.(79-81)CGA>CAA	p.R27Q		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	27	Cytoplasmic (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		GGCAGGTGGCGAGTGTCCTGG	0.577													63	245					0	0	1	0	0
AQP8	343	broad.mit.edu	37	16	25228723	25228723	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:25228723G>A	uc002doc.2	+	2	299	c.217G>A	c.(217-219)GGG>AGG	p.G73R		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	73	Extracellular (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		CCTGGCCCACGGGCTGGCTTT	0.607													12	197					0	0	1	0	0
AQP8	343	broad.mit.edu	37	16	25235776	25235776	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:25235776G>A	uc002doc.2	+	4	563	c.481G>A	c.(481-483)GAG>AAG	p.E161K		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	161	Helical; (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		GTTGGTGGCAGAGATCATCCT	0.617													14	50					0	0	1	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25251424	25251424	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:25251424G>A	uc002dod.3	-	7	3024	c.2617C>T	c.(2617-2619)CAT>TAT	p.H873Y	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.H669Y	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	873	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		GCGCTGAAATGAGAACTGTTG	0.453													25	49					0	0	1	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25251824	25251824	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:25251824C>T	uc002dod.3	-	7	2624	c.2217G>A	c.(2215-2217)CAG>CAA	p.Q739Q	ZKSCAN2_uc010vcl.1_Silent_p.Q535Q	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	739					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		CAAAAGGCCTCTGATGCACAA	0.488													23	77					0	0	1	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25258636	25258636	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:25258636G>A	uc002dod.3	-	5	1288	c.881C>T	c.(880-882)TCC>TTC	p.S294F	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.S90F|ZKSCAN2_uc002doe.2_Missense_Mutation_p.S294F	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	294	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		CTTGTTAGAGGAATGCAGACC	0.428													9	94					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147203	26147203	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:26147203C>T	uc002dof.2	+	2	1397	c.1005C>T	c.(1003-1005)ATC>ATT	p.I335I		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	335	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		GAATAGGGATCTATGCGCTGC	0.552													80	166					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147236	26147236	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:26147236T>A	uc002dof.2	+	2	1430	c.1038T>A	c.(1036-1038)TAT>TAA	p.Y346*		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	346	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		GGCTCCAGTATTTCCCCCTCT	0.542													61	128					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147540	26147540	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:26147540C>T	uc002dof.2	+	2	1734	c.1342C>T	c.(1342-1344)CAG>TAG	p.Q448*		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	448	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		TCAAGATTTTCAGTGGGAACA	0.468													5	14					0	0	1	0	0
IL4R	3566	broad.mit.edu	37	16	27374045	27374046	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27374045_27374046CC>TT	uc002don.2	+	11	1614_1615	c.1372_1373CC>TT	c.(1372-1374)CCC>TTC	p.P458F	IL4R_uc002dop.3_Missense_Mutation_p.P443F|IL4R_uc010bxy.2_Missense_Mutation_p.P458F|IL4R_uc002doo.2_Missense_Mutation_p.P298F	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	458	Cytoplasmic (Potential).|Required for IRS1 activation and IL4- induced cell growth.				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						GGAGGCACCTCCCTGGGGCAAG	0.624													17	69					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27448833	27448833	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27448833G>A	uc002doq.1	+	4	410	c.177G>A	c.(175-177)AAG>AAA	p.K59K	IL21R_uc002dor.1_Silent_p.K59K|IL21R_uc002dos.1_Silent_p.K59K	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	59	Extracellular (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						AAGAGCTGAAGGACGAGGCCA	0.612			T	BCL6	NHL								20	55					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27455990	27455991	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27455990_27455991GG>AA	uc002doq.1	+	6	868_869	c.635_636GG>AA	c.(634-636)GGG>GAA	p.G212E	IL21R_uc002dor.1_Missense_Mutation_p.G212E|IL21R_uc002dos.1_Missense_Mutation_p.G212E	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	212	Extracellular (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						TCCTACCAGGGGACCTGGAGTG	0.584			T	BCL6	NHL								21	86					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27460569	27460569	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27460569C>T	uc002doq.1	+	9	1815	c.1582C>T	c.(1582-1584)CCG>TCG	p.P528S	IL21R_uc002dor.1_Missense_Mutation_p.P528S|IL21R_uc002dos.1_Missense_Mutation_p.P528S|uc002dot.2_RNA	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	528	Cytoplasmic (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						GGTCATTCCTCCGCCACTTTC	0.652			T	BCL6	NHL								14	49					0	0	1	0	0
GTF3C1	2975	broad.mit.edu	37	16	27506194	27506194	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27506194G>A	uc002dov.1	-	16	2708	c.2668C>T	c.(2668-2670)CCC>TCC	p.P890S	GTF3C1_uc002dou.2_Missense_Mutation_p.P890S	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	890						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GGGATTGGGGGGATGTAGCGC	0.562													7	39					0	0	1	0	0
GTF3C1	2975	broad.mit.edu	37	16	27517295	27517296	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27517295_27517296GG>TA	uc002dov.1	-	10	1734_1735	c.1694_1695CC>TA	c.(1693-1695)TCC>TTA	p.S565L	GTF3C1_uc002dou.2_Missense_Mutation_p.S565L	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	565						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GGGAGACAAAGGACACGTTGGG	0.589													50	82					0	0	1	0	0
KIAA0556	23247	broad.mit.edu	37	16	27660021	27660021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27660021C>T	uc002dow.2	+	6	529	c.505C>T	c.(505-507)CTC>TTC	p.L169F	KIAA0556_uc002dox.1_Missense_Mutation_p.L34F	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	169										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						GGATGTGACTCTCCAGGCAAA	0.562													10	42					0	0	1	0	0
KIAA0556	23247	broad.mit.edu	37	16	27781201	27781201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27781201C>T	uc002dow.2	+	21	4019	c.3995C>T	c.(3994-3996)TCC>TTC	p.S1332F		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1332										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						GTCCACGTCTCCCTGGATGGC	0.567													68	136					0	0	1	0	0
KIAA0556	23247	broad.mit.edu	37	16	27789904	27789904	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27789904C>T	uc002dow.2	+	28	4835	c.4811C>T	c.(4810-4812)CCC>CTC	p.P1604L	KIAA0556_uc010vco.1_Missense_Mutation_p.P106L	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1604										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						GCCTTACGTCCCAAAACCTGC	0.597													25	102					0	0	1	0	0
GSG1L	146395	broad.mit.edu	37	16	27895874	27895874	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:27895874G>A	uc002doz.2	-	3	568	c.483C>T	c.(481-483)TTC>TTT	p.F161F	GSG1L_uc010bya.1_Intron|GSG1L_uc010bxz.1_Silent_p.F6F|GSG1L_uc002doy.2_Silent_p.F6F	NM_001109763	NP_001103233	Q6UXU4	GSG1L_HUMAN	GSG1-like isoform 1	161						integral to membrane				ovary(1)	1						TGCTGGAGTGGAAGAGCTCGA	0.577													4	14					0	0	1	0	0
XPO6	23214	broad.mit.edu	37	16	28118871	28118871	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28118871G>A	uc002dpa.1	-	18	2970	c.2469C>T	c.(2467-2469)GCC>GCT	p.A823A	XPO6_uc002dpb.1_Silent_p.A809A|XPO6_uc010vcp.1_Silent_p.A823A	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	823					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						CTGGAAAGAGGGCCAGGGAGA	0.532													26	71					0	0	1	0	0
SBK1	388228	broad.mit.edu	37	16	28328886	28328886	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28328886G>A	uc002dpd.2	+	2	963	c.174G>A	c.(172-174)GAG>GAA	p.E58E		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	58	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						TAGTCCGGGAGCTGGGCAAAG	0.627											OREG0023701	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	55					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	28354373	28354373	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28354373G>A	uc010vcq.1	-	7	832	c.779C>T	c.(778-780)TCC>TTC	p.S260F	uc010vcr.1_Missense_Mutation_p.S278F					SubName: Full=LOC728741 protein;																		GAGGCTCAGGGAGTTATCAGT	0.507													24	75					0	0	1	0	0
APOB48R	55911	broad.mit.edu	37	16	28508889	28508889	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28508889G>A	uc002dqb.1	+	3	2510	c.2500G>A	c.(2500-2502)GCC>ACC	p.A834T	uc010vct.1_Intron|APOB48R_uc010byg.1_Missense_Mutation_p.A372T	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	834	Glu-rich.				cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GCGGGTAGAGGCCGAGGAATC	0.662													4	10					0	0	1	0	0
IL27	246778	broad.mit.edu	37	16	28513323	28513323	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28513323C>T	uc002dqc.2	-	4	459	c.436G>A	c.(436-438)GAT>AAT	p.D146N	uc010vct.1_Intron	NM_145659	NP_663634	Q8NEV9	IL27A_HUMAN	interleukin 27 precursor	146					inflammatory response|innate immune response|positive regulation of interferon-gamma biosynthetic process|regulation of defense response to virus|regulation of T cell proliferation|regulation of T-helper 1 cell differentiation	extracellular space	cytokine activity|interleukin-27 receptor binding				0						CGCTGCAGATCGCGGAGGTCC	0.652													27	81					0	0	1	0	0
SULT1A1	6817	broad.mit.edu	37	16	28617391	28617391	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28617391G>A	uc002dqi.2	-	6	1234	c.761C>T	c.(760-762)CCC>CTC	p.P254L	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.P254L|SULT1A1_uc002dqk.2_Missense_Mutation_p.P254L|SULT1A1_uc002dql.2_Missense_Mutation_p.P254L|SULT1A1_uc002dqm.2_Missense_Mutation_p.P176L|SULT1A1_uc002dqn.2_Missense_Mutation_p.P345L|SULT1A1_uc002dqo.2_Missense_Mutation_p.P254L|SULT1A1_uc002dqp.2_Missense_Mutation_p.P254L	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	254					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						CCTCATGAAGGGGGAGATGCT	0.607													47	199					0	0	1	0	0
SULT1A1	6817	broad.mit.edu	37	16	28617510	28617510	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28617510G>A	uc002dqi.2	-	6	1115	c.642C>T	c.(640-642)TCC>TCT	p.S214S	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Silent_p.S214S|SULT1A1_uc002dqk.2_Silent_p.S214S|SULT1A1_uc002dql.2_Silent_p.S214S|SULT1A1_uc002dqm.2_Silent_p.S136S|SULT1A1_uc002dqn.2_Silent_p.S305S|SULT1A1_uc002dqo.2_Silent_p.S214S|SULT1A1_uc002dqp.2_Silent_p.S214S	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	214	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						CCTCTGGCAGGGAGCGCCCCA	0.547													26	134					0	0	1	0	0
SULT1A1	6817	broad.mit.edu	37	16	28618127	28618127	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28618127G>A	uc002dqi.2	-	5	1022	c.549C>T	c.(547-549)AGC>AGT	p.S183S	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Silent_p.S183S|SULT1A1_uc002dqk.2_Silent_p.S183S|SULT1A1_uc002dql.2_Silent_p.S183S|SULT1A1_uc002dqm.2_Silent_p.S105S|SULT1A1_uc002dqn.2_Silent_p.S274S|SULT1A1_uc002dqo.2_Silent_p.S183S|SULT1A1_uc002dqp.2_Silent_p.S183S	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	183					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						GGTGGGTGCGGCTCAGCTCCC	0.597													14	155					0	0	1	0	0
SULT1A1	6817	broad.mit.edu	37	16	28618371	28618371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28618371C>T	uc002dqi.2	-	4	873	c.400G>A	c.(400-402)GAT>AAT	p.D134N	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.D134N|SULT1A1_uc002dqk.2_Missense_Mutation_p.D134N|SULT1A1_uc002dql.2_Missense_Mutation_p.D134N|SULT1A1_uc002dqm.2_Missense_Mutation_p.D56N|SULT1A1_uc002dqn.2_Missense_Mutation_p.D225N|SULT1A1_uc002dqo.2_Missense_Mutation_p.D134N|SULT1A1_uc002dqp.2_Missense_Mutation_p.D134N	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	134	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						ACTGCCACATCCTTTGCGTTG	0.572													20	90					0	0	1	0	0
SULT1A1	6817	broad.mit.edu	37	16	28619626	28619626	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28619626C>T	uc002dqi.2	-	3	831	c.358G>A	c.(358-360)GAT>AAT	p.D120N	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.D120N|SULT1A1_uc002dqk.2_Missense_Mutation_p.D120N|SULT1A1_uc002dql.2_Missense_Mutation_p.D120N|SULT1A1_uc002dqm.2_Intron|SULT1A1_uc002dqn.2_Missense_Mutation_p.D211N|SULT1A1_uc002dqo.2_Missense_Mutation_p.D120N|SULT1A1_uc002dqp.2_Missense_Mutation_p.D120N	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	120					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						ACCTTCTGATCCAACAGAGTC	0.353													28	110					0	0	1	0	0
SULT1A1	6817	broad.mit.edu	37	16	28620128	28620128	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28620128C>T	uc002dqi.2	-	1	522	c.49G>A	c.(49-51)GGG>AGG	p.G17R	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.G17R|SULT1A1_uc002dqk.2_Missense_Mutation_p.G17R|SULT1A1_uc002dql.2_Missense_Mutation_p.G17R|SULT1A1_uc002dqm.2_Intron|SULT1A1_uc002dqn.2_Missense_Mutation_p.G108R|SULT1A1_uc002dqo.2_Missense_Mutation_p.G17R|SULT1A1_uc002dqp.2_Missense_Mutation_p.G17R	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	17					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						AGCGGGACCCCCTTCACGTAC	0.637													11	78					0	0	1	0	0
ATXN2L	11273	broad.mit.edu	37	16	28841284	28841284	+	Silent	SNP	C	T	T	rs145751891		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28841284C>T	uc002drc.2	+	8	1107	c.939C>T	c.(937-939)ATC>ATT	p.I313I	uc010vct.1_Intron|ATXN2L_uc010byl.1_Silent_p.I313I|ATXN2L_uc002drb.2_Silent_p.I313I|ATXN2L_uc002dqy.2_Silent_p.I313I|ATXN2L_uc002dra.2_Silent_p.I313I|ATXN2L_uc002dqz.2_Silent_p.I313I|ATXN2L_uc010vdb.1_Silent_p.I313I|ATXN2L_uc002dre.2_Silent_p.I313I|ATXN2L_uc002drf.2_5'UTR	NM_007245	NP_009176	Q8WWM7	ATX2L_HUMAN	ataxin 2 related protein isoform A	313						membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GCCTACGGATCGCCATGGAGA	0.602													10	42					0	0	1	0	0
SH2B1	25970	broad.mit.edu	37	16	28877987	28877987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28877987C>T	uc002dri.2	+	4	1011	c.572C>T	c.(571-573)CCC>CTC	p.P191L	uc010vct.1_Intron|SH2B1_uc010vdc.1_Intron|SH2B1_uc002drj.2_Missense_Mutation_p.P191L|SH2B1_uc002drk.2_Missense_Mutation_p.P191L|SH2B1_uc002drl.2_Missense_Mutation_p.P191L|SH2B1_uc010vdd.1_Intron|SH2B1_uc010vde.1_Missense_Mutation_p.P191L|SH2B1_uc002drm.2_Missense_Mutation_p.P191L	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	191	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).|Interaction with RAC1 (By similarity).|Required for NGF signaling (By similarity).				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						TCGTCAGGCCCCCCAGTCTTA	0.657													7	85					0	0	1	0	0
CD19	930	broad.mit.edu	37	16	28944296	28944296	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28944296C>T	uc002drs.2	+	3	482	c.420C>T	c.(418-420)TCC>TCT	p.S140S	uc010vct.1_Intron|CD19_uc010byo.1_Silent_p.S140S	NM_001770	NP_001761	P15391	CD19_HUMAN	CD19 antigen precursor	140	Extracellular (Potential).				cellular defense response	external side of plasma membrane|integral to plasma membrane	protein binding|receptor signaling protein activity	p.S140Y(1)		ovary(2)|central_nervous_system(1)	3						AGAACAGGTCCTCAGAGGGCC	0.617													3	14					0	0	1	0	0
CD19	930	broad.mit.edu	37	16	28944640	28944640	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:28944640C>T	uc002drs.2	+	4	707	c.645C>T	c.(643-645)ACC>ACT	p.T215T	uc010vct.1_Intron|CD19_uc010byo.1_Silent_p.T215T	NM_001770	NP_001761	P15391	CD19_HUMAN	CD19 antigen precursor	215	Extracellular (Potential).|Ig-like C2-type 2.				cellular defense response	external side of plasma membrane|integral to plasma membrane	protein binding|receptor signaling protein activity			ovary(2)|central_nervous_system(1)	3						TCTCCTGGACCCATGTGCACC	0.622													17	33					0	0	1	0	0
SPN	6693	broad.mit.edu	37	16	29675707	29675707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:29675707G>A	uc002dtm.2	+	2	794	c.658G>A	c.(658-660)GGA>AGA	p.G220R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SPN_uc002dtn.2_Missense_Mutation_p.G220R|SPN_uc010bzd.2_RNA	NM_001030288	NP_001025459	P16150	LEUK_HUMAN	sialophorin precursor	220	Extracellular (Potential).				blood coagulation|cellular defense response|chemotaxis|defense response to bacterium|establishment or maintenance of cell polarity|immune response|leukocyte migration|negative regulation of cell adhesion|positive regulation of tumor necrosis factor biosynthetic process	extracellular space|integral to plasma membrane	bacterial cell surface binding|transmembrane receptor activity			central_nervous_system(2)	2						CGGGGCCAGTGGACCCCAGGT	0.567													14	125					0	0	1	0	0
QPRT	23475	broad.mit.edu	37	16	29706093	29706093	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:29706093C>T	uc002dto.2	+	2	200	c.122C>T	c.(121-123)CCC>CTC	p.P41L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|QPRT_uc010vdu.1_Intron	NM_014298	NP_055113	Q15274	NADC_HUMAN	quinolinate phosphoribosyltransferase	41					protein oligomerization|quinolinate catabolic process|water-soluble vitamin metabolic process	cytosol	nicotinate-nucleotide diphosphorylase (carboxylating) activity|protein homodimerization activity				0					Niacin(DB00627)	GGGGCAGGCCCCTCGCAGGCG	0.652													19	73					0	0	1	0	0
C16orf54	283897	broad.mit.edu	37	16	29755651	29755651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:29755651C>T	uc002dtp.2	-	2	731	c.622G>A	c.(622-624)GAG>AAG	p.E208K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|uc002dtq.1_5'Flank	NM_175900	NP_787096	Q6UWD8	CP054_HUMAN	hypothetical protein LOC283897	208						integral to membrane					0						GAGATCTGCTCCAAGGTGACC	0.667													5	22					0	0	1	0	0
PRRT2	112476	broad.mit.edu	37	16	29824855	29824855	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:29824855C>T	uc002due.3	+	2	781	c.480C>T	c.(478-480)CTC>CTT	p.L160L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|uc002duc.1_5'Flank|PRRT2_uc002dud.2_Silent_p.L160L|PRRT2_uc002duf.1_Silent_p.L160L|C16orf53_uc002dug.3_5'Flank	NM_145239	NP_660282	Q7Z6L0	PRRT2_HUMAN	proline-rich transmembrane protein 2	160	Extracellular (Potential).|Pro-rich.				response to biotic stimulus	integral to membrane					0						AACCAGAGCTCCCTACCCAGG	0.632													12	28					0	0	1	0	0
PRRT2	112476	broad.mit.edu	37	16	29824999	29824999	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:29824999C>T	uc002due.3	+	2	925	c.624C>T	c.(622-624)TCC>TCT	p.S208S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|uc002duc.1_5'Flank|PRRT2_uc002dud.2_Silent_p.S208S|PRRT2_uc002duf.1_Silent_p.S208S|C16orf53_uc002dug.3_5'Flank	NM_145239	NP_660282	Q7Z6L0	PRRT2_HUMAN	proline-rich transmembrane protein 2	208	Extracellular (Potential).|Pro-rich.				response to biotic stimulus	integral to membrane					0						CAAAAAAATCCCCCCCAGCCA	0.622													3	11					0	0	1	0	0
MVP	9961	broad.mit.edu	37	16	29856018	29856019	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:29856018_29856019CC>TT	uc002dui.2	+	11	1923_1924	c.1839_1840CC>TT	c.(1837-1842)GGCCCC>GGTTCC	p.P614S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc002duj.2_Missense_Mutation_p.P614S|MVP_uc010vea.1_Missense_Mutation_p.P208S	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	614					mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AAGCGAAGGGCCCCGATGGCAT	0.624													52	122					0	0	1	0	0
MVP	9961	broad.mit.edu	37	16	29856066	29856066	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:29856066C>T	uc002dui.2	+	11	1971	c.1887C>T	c.(1885-1887)CCC>CCT	p.P629P	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc002duj.2_Silent_p.P629P|MVP_uc010vea.1_Silent_p.P223P	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	629					mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						CTGTCTTCCCCCAAAACGGGC	0.657													13	145					0	0	1	0	0
TAOK2	9344	broad.mit.edu	37	16	29997796	29997796	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:29997796C>T	uc002dva.1	+	16	2986	c.2203C>T	c.(2203-2205)CAG>TAG	p.Q735*	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Nonsense_Mutation_p.Q735*|TAOK2_uc002dvc.1_Nonsense_Mutation_p.Q735*|TAOK2_uc010bzm.1_Nonsense_Mutation_p.Q742*|TAOK2_uc002dvd.1_Nonsense_Mutation_p.Q562*	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	735					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GCATGCGGCCCAGGTTCGCCA	0.672													39	127					0	0	1	0	0
TAOK2	9344	broad.mit.edu	37	16	29998372	29998372	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:29998372C>T	uc002dva.1	+	16	3562	c.2779C>T	c.(2779-2781)CCT>TCT	p.P927S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.P934S|TAOK2_uc002dvd.1_Missense_Mutation_p.P754S	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	927					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						CCCCGACATCCCTCCTGAACC	0.647													51	218					0	0	1	0	0
INO80E	283899	broad.mit.edu	37	16	30012298	30012298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30012298C>T	uc002dvg.1	+	5	434	c.333C>T	c.(331-333)TCC>TCT	p.S111S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|INO80E_uc002dvh.1_RNA|INO80E_uc002dvi.1_Silent_p.S111S|INO80E_uc002dvj.1_RNA|INO80E_uc002dvk.1_Silent_p.S111S	NM_173618	NP_775889	Q8NBZ0	IN80E_HUMAN	INO80 complex subunit E	111	Pro-rich.				DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex				skin(1)	1						CCAGCCTCTCCCTGCCTCCTT	0.657													17	62					0	0	1	0	0
INO80E	283899	broad.mit.edu	37	16	30016748	30016748	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30016748C>T	uc002dvg.1	+	7	821	c.720C>T	c.(718-720)ATC>ATT	p.I240I	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|INO80E_uc002dvh.1_RNA|INO80E_uc002dvi.1_3'UTR|INO80E_uc002dvj.1_RNA|INO80E_uc002dvk.1_Silent_p.I201I	NM_173618	NP_775889	Q8NBZ0	IN80E_HUMAN	INO80 complex subunit E	240					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex				skin(1)	1						ACCTGGTGATCGACATCCCGG	0.662											OREG0023725	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	11					0	0	1	0	0
DOC2A	8448	broad.mit.edu	37	16	30018572	30018572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30018572C>T	uc002dvm.2	-	6	676	c.576G>A	c.(574-576)GGG>GGA	p.G192G	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|DOC2A_uc002dvl.2_Silent_p.G192G|DOC2A_uc002dvn.2_Silent_p.G192G|DOC2A_uc010vef.1_RNA|DOC2A_uc002dvo.2_Silent_p.G192G|DOC2A_uc002dvp.2_Silent_p.G192G|DOC2A_uc002dvq.2_Silent_p.G192G	NM_003586	NP_003577	Q14183	DOC2A_HUMAN	double C2-like domains, alpha	192	C2 1.				nervous system development|regulation of calcium ion-dependent exocytosis	cell junction|lysosome|synaptic vesicle membrane|synaptosome	calcium-dependent phospholipid binding|protein binding|transporter activity			ovary(2)	2						CGCGGATCTCCCCAATAAACT	0.622													32	62					0	0	1	0	0
DOC2A	8448	broad.mit.edu	37	16	30020383	30020383	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30020383G>A	uc002dvm.2	-	5	561	c.461C>T	c.(460-462)CCC>CTC	p.P154L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|DOC2A_uc002dvl.2_Missense_Mutation_p.P154L|DOC2A_uc002dvn.2_Missense_Mutation_p.P154L|DOC2A_uc010vef.1_RNA|DOC2A_uc002dvo.2_Missense_Mutation_p.P154L|DOC2A_uc002dvp.2_Missense_Mutation_p.P154L|DOC2A_uc002dvq.2_Missense_Mutation_p.P154L	NM_003586	NP_003577	Q14183	DOC2A_HUMAN	double C2-like domains, alpha	154	C2 1.				nervous system development|regulation of calcium ion-dependent exocytosis	cell junction|lysosome|synaptic vesicle membrane|synaptosome	calcium-dependent phospholipid binding|protein binding|transporter activity			ovary(2)	2						ATTCCACACGGGATTCAGTGT	0.567													8	51					0	0	1	0	0
DOC2A	8448	broad.mit.edu	37	16	30020409	30020409	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30020409C>T	uc002dvm.2	-	5	535	c.435G>A	c.(433-435)ACG>ACA	p.T145T	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|DOC2A_uc002dvl.2_Silent_p.T145T|DOC2A_uc002dvn.2_Silent_p.T145T|DOC2A_uc010vef.1_RNA|DOC2A_uc002dvo.2_Silent_p.T145T|DOC2A_uc002dvp.2_Silent_p.T145T|DOC2A_uc002dvq.2_Silent_p.T145T	NM_003586	NP_003577	Q14183	DOC2A_HUMAN	double C2-like domains, alpha	145	C2 1.				nervous system development|regulation of calcium ion-dependent exocytosis	cell junction|lysosome|synaptic vesicle membrane|synaptosome	calcium-dependent phospholipid binding|protein binding|transporter activity			ovary(2)	2						TCTGAGTCTTCGTTTTTAGCT	0.572													9	44					0	0	1	0	0
C16orf92	146378	broad.mit.edu	37	16	30035190	30035190	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30035190C>T	uc002dvs.2	+	2	294	c.273C>T	c.(271-273)ATC>ATT	p.I91I	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|C16orf92_uc002dvr.2_Silent_p.I69I	NM_001109660	NP_001103130	Q96LL3	CP092_HUMAN	hypothetical protein LOC146378 isoform 2	91						integral to membrane					0						AGAAACCCATCGTGTTCATTA	0.557													5	43					0	0	1	0	0
ALDOA	226	broad.mit.edu	37	16	30081507	30081507	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30081507C>T	uc002dvw.2	+	12	2197	c.1069C>T	c.(1069-1071)CTC>TTC	p.L357F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|ALDOA_uc002dvx.2_Missense_Mutation_p.L357F|ALDOA_uc002dvy.2_Missense_Mutation_p.L357F|ALDOA_uc002dvz.2_Missense_Mutation_p.L357F|ALDOA_uc002dwa.3_Missense_Mutation_p.L357F|ALDOA_uc002dwb.1_3'UTR|ALDOA_uc002dwc.2_Missense_Mutation_p.L357F|ALDOA_uc010veg.1_Missense_Mutation_p.L411F|ALDOA_uc002dwd.2_Missense_Mutation_p.L361F	NM_184043	NP_908932	P04075	ALDOA_HUMAN	fructose-bisphosphate aldolase A	357					actin filament organization|ATP biosynthetic process|fructose 1,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|muscle cell homeostasis|platelet activation|platelet degranulation|protein homotetramerization|regulation of cell shape|striated muscle contraction	actin cytoskeleton|cytosol|extracellular vesicular exosome|I band|platelet alpha granule lumen	actin binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding|tubulin binding			lung(1)	1						CAGCGAGTCCCTCTTCGTCTC	0.632													23	88					0	0	1	0	0
PPP4C	5531	broad.mit.edu	37	16	30094997	30094997	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30094997C>T	uc002dwe.2	+	7	643	c.499C>T	c.(499-501)CTC>TTC	p.L167F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|PPP4C_uc002dwf.2_Missense_Mutation_p.L167F|PPP4C_uc002dwg.2_RNA|PPP4C_uc002dwh.2_Missense_Mutation_p.L88F	NM_002720	NP_002711	P60510	PP4C_HUMAN	protein phosphatase 4, catalytic subunit	167					microtubule cytoskeleton organization|regulation of double-strand break repair via homologous recombination	centrosome|nucleus	metal ion binding|NF-kappaB-inducing kinase activity|protein binding|protein serine/threonine phosphatase activity			skin(1)	1						GCACGGGGGCCTCTCCCCCTC	0.632													24	53					0	0	1	0	0
TBX6	6911	broad.mit.edu	37	16	30097955	30097955	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30097955T>C	uc010veh.1	-	8	1035	c.975A>G	c.(973-975)GAA>GAG	p.E325E	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron	NM_004608	NP_004599	O95947	TBX6_HUMAN	T-box 6	325					anatomical structure morphogenesis|mesoderm development|multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						CTGGGGCCTGTTCTGGATCTG	0.662													3	11					0	0	1	0	0
TBX6	6911	broad.mit.edu	37	16	30100386	30100386	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30100386G>A	uc010veh.1	-	4	559	c.499C>T	c.(499-501)CGC>TGC	p.R167C	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TBX6_uc002dwk.1_Missense_Mutation_p.R167C	NM_004608	NP_004599	O95947	TBX6_HUMAN	T-box 6	167	T-box.				anatomical structure morphogenesis|mesoderm development|multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						TCAGGCAGGCGGGGCTCTGCC	0.632													9	85					0	0	1	0	0
MAPK3	5595	broad.mit.edu	37	16	30133195	30133195	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30133195G>A	uc002dws.2	-	2	403	c.303C>T	c.(301-303)ATC>ATT	p.I101I	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAPK3_uc002dwr.2_5'UTR|MAPK3_uc002dwv.3_Silent_p.I101I|MAPK3_uc002dwt.2_Silent_p.I101I|MAPK3_uc002dwu.2_RNA|MAPK3_uc010bzp.2_RNA	NM_002746	NP_002737	P27361	MK03_HUMAN	mitogen-activated protein kinase 3 isoform 1	101	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|cellular response to mechanical stimulus|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|interleukin-1-mediated signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription initiation from RNA polymerase I promoter	cytosol|nucleoplasm	ATP binding|MAP kinase activity|phosphatase binding				0					Arsenic trioxide(DB01169)|Isoproterenol(DB01064)|Simvastatin(DB00641)|Sulindac(DB00605)	CTCGGATGCCGATGACATTCT	0.602													14	16					0	0	1	0	0
CORO1A	11151	broad.mit.edu	37	16	30199825	30199825	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30199825G>A	uc002dww.2	+	10	1331	c.1209G>A	c.(1207-1209)GAG>GAA	p.E403E	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|CORO1A_uc010bzq.2_Silent_p.E403E|CORO1A_uc010bzr.2_Intron|CORO1A_uc002dwx.2_Silent_p.E297E|CORO1A_uc002dwy.1_3'UTR|LOC606724_uc002dwz.1_5'Flank	NM_007074	NP_009005	P31146	COR1A_HUMAN	coronin, actin binding protein, 1A	403					cell-substrate adhesion|innate immune response|leukocyte chemotaxis|negative regulation of actin nucleation|phagolysosome assembly|positive chemotaxis|regulation of cell shape|uropod organization	actin filament|cortical actin cytoskeleton|lamellipodium|phagocytic cup|phagocytic vesicle membrane	actin filament binding|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein homodimerization activity				0						AGAGCCGGGAGCTGAGGGTCA	0.682													20	38					0	0	1	0	0
MYLPF	29895	broad.mit.edu	37	16	30387211	30387211	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30387211C>T	uc002dxv.1	+	2	130	c.74C>T	c.(73-75)ACT>ATT	p.T25I		NM_013292	NP_037424	Q96A32	MLRS_HUMAN	myosin light chain, phosphorylatable, fast	25	EF-hand 1.				skeletal muscle tissue development	muscle myosin complex	calcium ion binding|structural constituent of muscle				0			Colorectal(24;0.193)			TTCGACCAGACTCAGATCCAG	0.597													5	27					0	0	1	0	0
ITGAL	3683	broad.mit.edu	37	16	30495221	30495221	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30495221G>A	uc002dyi.3	+	8	972	c.796G>A	c.(796-798)GAG>AAG	p.E266K	ITGAL_uc010veu.1_RNA|ITGAL_uc002dyj.3_Missense_Mutation_p.E183K|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	266	VWFA.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	CACGGATGGGGAGGCCACTGA	0.582													28	185					0	0	1	0	0
ITGAL	3683	broad.mit.edu	37	16	30495438	30495438	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30495438G>A	uc002dyi.3	+	9	1036	c.860G>A	c.(859-861)GGA>GAA	p.G287E	ITGAL_uc010veu.1_RNA|ITGAL_uc002dyj.3_Missense_Mutation_p.G204E|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	287	VWFA.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	TCACAGATTGGAAAGCATTTT	0.483													20	170					0	0	1	0	0
ITGAL	3683	broad.mit.edu	37	16	30507767	30507767	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30507767G>A	uc002dyi.3	+	15	1888	c.1712G>A	c.(1711-1713)GGG>GAG	p.G571E	ITGAL_uc002dyj.3_Missense_Mutation_p.G488E|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	571	FG-GAP 7.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	CGGATAGAAGGGACCCAAGTG	0.577													13	129					0	0	1	0	0
ITGAL	3683	broad.mit.edu	37	16	30510707	30510708	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30510707_30510708GG>AA	uc002dyi.3	+	17	2218_2219	c.2042_2043GG>AA	c.(2041-2043)CGG>CAA	p.R681Q	ITGAL_uc002dyj.3_Missense_Mutation_p.R598Q|ITGAL_uc010vev.1_Missense_Mutation_p.R77Q	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	681	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GATGGCCACCGGACCAGAAGAC	0.545													13	164					0	0	1	0	0
ITGAL	3683	broad.mit.edu	37	16	30531273	30531273	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30531273C>T	uc002dyi.3	+	30	3500	c.3324C>T	c.(3322-3324)TTC>TTT	p.F1108F	ITGAL_uc002dyj.3_Silent_p.F1024F|ITGAL_uc010vev.1_Silent_p.F342F	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	1108	Helical; (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	TGCTCATTTTCATAGTGCTGT	0.587													14	112					0	0	1	0	0
ITGAL	3683	broad.mit.edu	37	16	30532907	30532907	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30532907C>T	uc002dyi.3	+	31	3610	c.3434C>T	c.(3433-3435)TCT>TTT	p.S1145F	ITGAL_uc002dyj.3_Missense_Mutation_p.S1061F|ITGAL_uc010vev.1_Missense_Mutation_p.S379F	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	1145	Cytoplasmic (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	CAGCTGGCATCTGGGCAAGAG	0.547													35	79					0	0	1	0	0
ZNF768	79724	broad.mit.edu	37	16	30536515	30536515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30536515G>A	uc002dyk.3	-	2	1122	c.946C>T	c.(946-948)CCC>TCC	p.P316S	ZNF768_uc010vex.1_Missense_Mutation_p.P285S|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Missense_Mutation_p.P285S	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	316					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						CATTTGTAGGGCCGCTCGCCA	0.607													6	76					0	0	1	0	0
ZNF688	146542	broad.mit.edu	37	16	30581396	30581396	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30581396G>A	uc002dyt.2	-	3	1450	c.672C>T	c.(670-672)TTC>TTT	p.F224F	ZNF688_uc002dys.2_Silent_p.F210F|uc002dyu.2_5'Flank	NM_145271	NP_660314	P0C7X2	ZN688_HUMAN	zinc finger protein 688 isoform a	224	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTCCACTGCGAACTTCCTCT	0.706													5	17					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30724604	30724604	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30724604C>T	uc002dze.1	+	15	2591	c.2206C>T	c.(2206-2208)CGT>TGT	p.R736C	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.R593C|SRCAP_uc010bzz.1_Missense_Mutation_p.R306C	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	736	Helicase ATP-binding.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCAGGCCTTCCGTCGCAAGAA	0.522													25	82					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30724930	30724930	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30724930C>T	uc002dze.1	+	16	2776	c.2391C>T	c.(2389-2391)TTC>TTT	p.F797F	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.F654F|SRCAP_uc010bzz.1_Silent_p.F367F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	797					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCCATGTCTTCCAGTCTCATC	0.517													41	148					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30740440	30740440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30740440C>T	uc002dze.1	+	26	6197	c.5812C>T	c.(5812-5814)CCT>TCT	p.P1938S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P1733S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1938					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCCCATCGGCCCTCGTTCTCC	0.597													28	67					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30740710	30740710	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30740710C>T	uc002dze.1	+	27	6329	c.5944C>T	c.(5944-5946)CCT>TCT	p.P1982S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P1777S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1982					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TGTCATGCCTCCTGTGGAGGC	0.567													14	32					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30749771	30749772	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30749771_30749772CC>TT	uc002dze.1	+	34	8795_8796	c.8410_8411CC>TT	c.(8410-8412)CCC>TTC	p.P2804F	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P2599F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2804	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			ATCCTCCCCTCCCATTGGTGGG	0.644													7	102					0	0	1	0	0
ZNF629	23361	broad.mit.edu	37	16	30794044	30794044	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30794044G>A	uc002dzs.1	-	3	1813	c.1605C>T	c.(1603-1605)ATC>ATT	p.I535I		NM_001080417	NP_001073886	Q9UEG4	ZN629_HUMAN	zinc finger protein 629	535	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			Colorectal(24;0.198)			CCCTCTCATGGATCACCCGGT	0.697													7	16					0	0	1	0	0
SETD1A	9739	broad.mit.edu	37	16	30982993	30982993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:30982993C>T	uc002ead.1	+	13	3997	c.3311C>T	c.(3310-3312)CCA>CTA	p.P1104L		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1104	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						GCAGGCTCCCCAGTCACACCC	0.657													14	39					0	0	1	0	0
STX4	6810	broad.mit.edu	37	16	31045633	31045633	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31045633C>T	uc002eal.2	+	3	443	c.219C>T	c.(217-219)CCC>CCT	p.P73P	STX4_uc002eak.2_Silent_p.P71P|STX4_uc002eam.2_5'UTR	NM_004604	NP_004595	Q12846	STX4_HUMAN	syntaxin 4	73	Cytoplasmic (Potential).|Potential.				intracellular protein transport|platelet activation|post-Golgi vesicle-mediated transport	basolateral plasma membrane|cell surface|cytosol|integral to membrane|plasma membrane enriched fraction|specific granule|vacuole	SNAP receptor activity				0						TGGCCACGCCCCTTCCCGAGG	0.602													41	74					0	0	1	0	0
MYST1	84148	broad.mit.edu	37	16	31131550	31131550	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31131550C>T	uc002eay.2	+	2	273	c.255C>T	c.(253-255)GGC>GGT	p.G85G	MYST1_uc002eax.2_Silent_p.G85G	NM_032188	NP_115564	Q9H7Z6	MYST1_HUMAN	MYST histone acetyltransferase 1 isoform 1	85	Chromo.				histone H4-K16 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex|MSL complex	histone acetyltransferase activity|metal ion binding|methylated histone residue binding|transcription factor binding			ovary(1)	1						ACCAGGAGGGCCGAGAGGAAT	0.547													41	105					0	0	1	0	0
PRSS8	5652	broad.mit.edu	37	16	31144657	31144657	+	Silent	SNP	G	A	A	rs143732587	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31144657G>A	uc002ebc.3	-	3	488	c.156C>T	c.(154-156)GTC>GTT	p.V52V	PRSS8_uc010vfe.1_Silent_p.V52V	NM_002773	NP_002764	Q16651	PRSS8_HUMAN	prostasin preproprotein	52	Peptidase S1.				proteolysis	extracellular space|integral to membrane|plasma membrane	serine-type endopeptidase activity				0						ACTGACCGGCGACTGCACTGC	0.637													6	48					0	0	1	0	0
PRSS36	146547	broad.mit.edu	37	16	31150654	31150654	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31150654C>T	uc002ebd.2	-	15	2432	c.2373G>A	c.(2371-2373)GAG>GAA	p.E791E	PRSS36_uc010vff.1_Silent_p.E566E|PRSS36_uc010vfg.1_Silent_p.E786E|PRSS36_uc010vfh.1_Silent_p.E688E	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	791	Peptidase S1 3.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						CAGCAAACAGCTCCCGGCTCC	0.632													8	56					0	0	1	0	0
PRSS36	146547	broad.mit.edu	37	16	31155072	31155072	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31155072C>T	uc002ebd.2	-	7	866	c.807G>A	c.(805-807)CGG>CGA	p.R269R	PRSS36_uc010vff.1_Silent_p.R44R|PRSS36_uc010vfg.1_Silent_p.R269R|PRSS36_uc010vfh.1_Silent_p.R269R	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	269	Peptidase S1 1.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						GGCGGTTTCTCCGTCCACAGC	0.612													16	53					0	0	1	0	0
PRSS36	146547	broad.mit.edu	37	16	31155153	31155153	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31155153G>A	uc002ebd.2	-	7	785	c.726C>T	c.(724-726)GAC>GAT	p.D242D	PRSS36_uc010vff.1_Silent_p.D17D|PRSS36_uc010vfg.1_Silent_p.D242D|PRSS36_uc010vfh.1_Silent_p.D242D	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	242	Peptidase S1 1.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						GCCCCCCAGAGTCACCCTAGT	0.597													6	53					0	0	1	0	0
PRSS36	146547	broad.mit.edu	37	16	31159911	31159911	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31159911G>A	uc002ebd.2	-	5	417	c.358C>T	c.(358-360)CGC>TGC	p.R120C	PRSS36_uc010vff.1_5'UTR|PRSS36_uc010vfg.1_Missense_Mutation_p.R120C|PRSS36_uc010vfh.1_Missense_Mutation_p.R120C	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	120	Peptidase S1 1.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						GCCACTGCGCGGGTGTGCGCG	0.751													16	34					0	0	1	0	0
TRIM72	493829	broad.mit.edu	37	16	31230642	31230642	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31230642G>A	uc002ebn.1	+	4	748	c.519G>A	c.(517-519)GGG>GGA	p.G173G	PYDC1_uc002ebo.2_5'Flank	NM_001008274	NP_001008275	Q6ZMU5	TRI72_HUMAN	tripartite motif-containing 72	173					exocytosis|muscle organ development|muscle system process|plasma membrane repair|protein homooligomerization	cytoplasmic vesicle membrane|sarcolemma	phosphatidylserine binding|zinc ion binding				0						GGGCCGTGGGGGAGCAGCTGG	0.667													20	86					0	0	1	0	0
TRIM72	493829	broad.mit.edu	37	16	31232216	31232216	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31232216G>A	uc002ebn.1	+	5	947	c.718_splice	c.e5-1	p.K240_splice		NM_001008274	NP_001008275	Q6ZMU5	TRI72_HUMAN	tripartite motif-containing 72						exocytosis|muscle organ development|muscle system process|plasma membrane repair|protein homooligomerization	cytoplasmic vesicle membrane|sarcolemma	phosphatidylserine binding|zinc ion binding				0						TCTCTCTCCAGAAATACTGCC	0.542													36	103					0	0	1	0	0
TRIM72	493829	broad.mit.edu	37	16	31235609	31235609	+	Missense_Mutation	SNP	G	A	A	rs112486041		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31235609G>A	uc002ebn.1	+	7	1196	c.967G>A	c.(967-969)GAG>AAG	p.E323K	uc002ebp.1_5'Flank	NM_001008274	NP_001008275	Q6ZMU5	TRI72_HUMAN	tripartite motif-containing 72	323	B30.2/SPRY.				exocytosis|muscle organ development|muscle system process|plasma membrane repair|protein homooligomerization	cytoplasmic vesicle membrane|sarcolemma	phosphatidylserine binding|zinc ion binding				0						GCCGGCCGGGGAGGACCCGCG	0.706													9	20					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31282318	31282318	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31282318C>T	uc002ebq.2	+	6	569	c.471C>T	c.(469-471)GGC>GGT	p.G157G	ITGAM_uc002ebr.2_Silent_p.G157G	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	157	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						TGATTGATGGCTCTGGTAGCA	0.458													59	218					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31284752	31284752	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31284752G>A	uc002ebq.2	+	8	869	c.771G>A	c.(769-771)ACG>ACA	p.T257T	ITGAM_uc002ebr.2_Silent_p.T257T|ITGAM_uc010cam.1_5'Flank	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	257	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						TTGTCATCACGGATGGAGAAA	0.498													36	54					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31286972	31286972	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31286972C>T	uc002ebq.2	+	9	1059	c.961C>T	c.(961-963)CTG>TTG	p.L321L	ITGAM_uc002ebr.2_Silent_p.L321L|ITGAM_uc010cam.1_5'UTR	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	321	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CTTTGAGGCTCTGAAGACCAT	0.557													5	57					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31332622	31332622	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31332622G>A	uc002ebq.2	+	15	1866	c.1768G>A	c.(1768-1770)GGC>AGC	p.G590S	ITGAM_uc002ebr.2_Missense_Mutation_p.G591S|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_5'UTR|ITGAM_uc002ebs.1_5'UTR	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	590	Extracellular (Potential).|FG-GAP 7.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						ACTGAGTGGGGGCCAGGACCT	0.562													35	140					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31332892	31332892	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31332892G>A	uc002ebq.2	+	16	2044	c.1946G>A	c.(1945-1947)GGA>GAA	p.G649E	ITGAM_uc002ebr.2_Missense_Mutation_p.G650E|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_Missense_Mutation_p.G55E|ITGAM_uc002ebs.1_Missense_Mutation_p.G55E	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	649	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						AAGGAAGCCGGAGAGGTCAGA	0.512													51	122					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31341692	31341692	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31341692G>A	uc002ebq.2	+	27	3222	c.3124G>A	c.(3124-3126)GAA>AAA	p.E1042K	ITGAM_uc002ebr.2_Missense_Mutation_p.E1043K|ITGAM_uc010can.2_Missense_Mutation_p.E448K	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	1042	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CATCCAGGAAGAATTCAATGC	0.582													27	69					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31341840	31341840	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31341840C>T	uc002ebq.2	+	28	3288	c.3190C>T	c.(3190-3192)CTC>TTC	p.L1064F	ITGAM_uc002ebr.2_Missense_Mutation_p.L1065F|ITGAM_uc010can.2_Missense_Mutation_p.L470F	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	1064	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						GCATAACCACCTCCTGATCGT	0.617													7	23					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31342524	31342525	+	Silent	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31342524_31342525CC>TT	uc002ebq.2	+	29	3413_3414	c.3315_3316CC>TT	c.(3313-3318)CCCCTG>CCTTTG	p.1105_1106PL>PL	ITGAM_uc002ebr.2_Silent_p.1106_1107PL>PL|ITGAM_uc010can.2_Silent_p.511_512PL>PL	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	1105_1106	Helical; (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						TCCCCAACCCCCTGCCGCTCAT	0.673													23	39					0	0	1	0	0
ITGAX	3687	broad.mit.edu	37	16	31374055	31374056	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31374055_31374056CC>TT	uc002ebu.1	+	12	1407_1408	c.1340_1341CC>TT	c.(1339-1341)GCC>GTT	p.A447V	ITGAX_uc002ebt.2_Missense_Mutation_p.A447V|ITGAX_uc010vfk.1_Missense_Mutation_p.A97V	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	447	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGGATGAAGGCCGAAGTCACGG	0.649													12	35					0	0	1	0	0
ITGAX	3687	broad.mit.edu	37	16	31374337	31374337	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31374337C>T	uc002ebu.1	+	13	1508	c.1441C>T	c.(1441-1443)CCC>TCC	p.P481S	ITGAX_uc002ebt.2_Missense_Mutation_p.P481S|ITGAX_uc010vfk.1_Missense_Mutation_p.P131S	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	481	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CATCGGGGCCCCCCATTACTA	0.677													18	85					0	0	1	0	0
ITGAX	3687	broad.mit.edu	37	16	31374539	31374540	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31374539_31374540GG>AA	uc002ebu.1	+	14	1621_1622	c.1554_1555GG>AA	c.(1552-1557)TGGGGT>TGAAGT	p.518_519WG>*S	ITGAX_uc002ebt.2_Nonsense_Mutation_p.518_519WG>*S|ITGAX_uc010vfk.1_Nonsense_Mutation_p.168_169WG>*S	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	518_519	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCCACCCCTGGGGTCGCTTTGG	0.639													56	101					0	0	1	0	0
ITGAX	3687	broad.mit.edu	37	16	31391694	31391694	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31391694C>T	uc002ebu.1	+	27	3235	c.3168C>T	c.(3166-3168)GTC>GTT	p.V1056V	ITGAX_uc002ebt.2_Silent_p.V1056V	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	1056	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TTGGCTGGGTCCGCCAGGTGT	0.647													6	19					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31404690	31404690	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31404690C>T	uc002ebv.1	+	1	58	c.9C>T	c.(7-9)TTC>TTT	p.F3F	ITGAD_uc010vfl.1_Silent_p.F3F|ITGAD_uc010cap.1_Silent_p.F3F	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	3					cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						GGATGACCTTCGGCACTGTGC	0.587													34	87					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31405603	31405603	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31405603G>A	uc002ebv.1	+	2	127	c.78G>A	c.(76-78)ACG>ACA	p.T26T	ITGAD_uc010vfl.1_Silent_p.T26T|ITGAD_uc010cap.1_Silent_p.T26T	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	26	Extracellular (Potential).|FG-GAP 1.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						AGGAGCCTACGATCTTCCAGG	0.572													16	48					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31421725	31421725	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31421725T>C	uc002ebv.1	+	11	1142	c.1093T>C	c.(1093-1095)TTC>CTC	p.F365L	ITGAD_uc010cap.1_Missense_Mutation_p.F365L	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	365	Extracellular (Potential).|FG-GAP 3.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						GGATGGCCTCTTCCTGGGGGC	0.572													46	86					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31422419	31422420	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31422419_31422420CC>TT	uc002ebv.1	+	13	1428_1429	c.1379_1380CC>TT	c.(1378-1380)TCC>TTT	p.S460F	ITGAD_uc010cap.1_Missense_Mutation_p.S460F	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	460	Extracellular (Potential).|FG-GAP 5.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						TTCGGGGCCTCCCTCTGCTCTG	0.663													18	116					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31424182	31424183	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31424182_31424183CC>TT	uc002ebv.1	+	15	1780_1781	c.1731_1732CC>TT	c.(1729-1734)TCCCCC>TCTTCC	p.P578S	ITGAD_uc010cap.1_Missense_Mutation_p.P579S	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	578	Extracellular (Potential).|FG-GAP 7.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CCCAGCTCTCCCCCAGGCTGCA	0.599													47	85					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31434475	31434475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31434475G>A	uc002ebv.1	+	24	2870	c.2821G>A	c.(2821-2823)GAT>AAT	p.D941N	ITGAD_uc010cap.1_Missense_Mutation_p.D942N	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	941	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						TGCAACCTCCGATGAGAAGAA	0.498													12	47					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31434773	31434773	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31434773C>T	uc002ebv.1	+	25	3009	c.2960C>T	c.(2959-2961)CCA>CTA	p.P987L	ITGAD_uc010cap.1_Missense_Mutation_p.P988L	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	987	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						ATGGAGGCCCCATCTCAGGTA	0.542													20	62					0	0	1	0	0
ARMC5	79798	broad.mit.edu	37	16	31475943	31475943	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31475943C>T	uc002ecc.2	+	4	2128	c.1599C>T	c.(1597-1599)TCC>TCT	p.S533S	ARMC5_uc010vfn.1_Silent_p.S628S|ARMC5_uc010vfo.1_Silent_p.S565S|ARMC5_uc002eca.3_Silent_p.S533S|ARMC5_uc010vfp.1_Silent_p.S341S|ARMC5_uc002ecb.2_Silent_p.S533S	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	533							binding			pancreas(1)	1						CGCGCTTTTCCCAGGCCCCTG	0.731													8	11					0	0	1	0	0
ARMC5	79798	broad.mit.edu	37	16	31477646	31477646	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31477646C>T	uc002ecc.2	+	6	2773	c.2244C>T	c.(2242-2244)CCC>CCT	p.P748P	ARMC5_uc010vfn.1_Silent_p.P843P|ARMC5_uc010vfo.1_Silent_p.P780P|ARMC5_uc002eca.3_3'UTR|ARMC5_uc010vfp.1_Silent_p.P556P|ARMC5_uc002ecb.2_3'UTR	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	748	BTB.						binding			pancreas(1)	1						TCCCAGCTCCCGACCTGCACT	0.667													11	27					0	0	1	0	0
TGFB1I1	7041	broad.mit.edu	37	16	31487875	31487875	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31487875G>A	uc002ecd.1	+	9	988	c.962G>A	c.(961-963)GGA>GAA	p.G321E	TGFB1I1_uc002ece.1_Missense_Mutation_p.G304E|TGFB1I1_uc010caq.1_Missense_Mutation_p.G160E	NM_001042454	NP_001035919	O43294	TGFI1_HUMAN	transforming growth factor beta 1 induced	321	LIM zinc-binding 2.				androgen receptor signaling pathway|cell adhesion|negative regulation of cell proliferation|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|transcription from RNA polymerase II promoter|ubiquitin-dependent SMAD protein catabolic process|Wnt receptor signaling pathway	cytoplasm|cytoskeleton|focal adhesion|nuclear matrix	androgen receptor binding|I-SMAD binding|Roundabout binding|transcription coactivator activity|zinc ion binding				0						GAGCCCTTCGGAGATGAGGGT	0.637													5	11					0	0	1	0	0
TGFB1I1	7041	broad.mit.edu	37	16	31488639	31488639	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31488639C>T	uc002ecd.1	+	11	1154	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	TGFB1I1_uc002ece.1_Silent_p.F359F|TGFB1I1_uc010caq.1_Silent_p.F215F	NM_001042454	NP_001035919	O43294	TGFI1_HUMAN	transforming growth factor beta 1 induced	376	LIM zinc-binding 3.				androgen receptor signaling pathway|cell adhesion|negative regulation of cell proliferation|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|transcription from RNA polymerase II promoter|ubiquitin-dependent SMAD protein catabolic process|Wnt receptor signaling pathway	cytoplasm|cytoskeleton|focal adhesion|nuclear matrix	androgen receptor binding|I-SMAD binding|Roundabout binding|transcription coactivator activity|zinc ion binding				0						AGGAATGCTTCGCGCCCTTCT	0.662													18	28					0	0	1	0	0
SLC5A2	6524	broad.mit.edu	37	16	31497190	31497190	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31497190C>T	uc002ecf.3	+	4	463	c.444C>T	c.(442-444)TTC>TTT	p.F148F	SLC5A2_uc010car.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	148	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						TCTCCCTTTTCCTGTACATCT	0.602													13	54					0	0	1	0	0
SLC5A2	6524	broad.mit.edu	37	16	31498855	31498855	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31498855C>T	uc002ecf.3	+	7	679	c.660C>T	c.(658-660)TTC>TTT	p.F220F	SLC5A2_uc010car.2_RNA|C16orf58_uc002ecg.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	220	Helical; (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						CGGCAGCCTTCCACGAGGTGG	0.667													28	87					0	0	1	0	0
AHSP	51327	broad.mit.edu	37	16	31539877	31539877	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31539877G>A	uc002ecj.2	+	3	259	c.174G>A	c.(172-174)GGG>GGA	p.G58G		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	58					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						AGGTGACAGGGGAGCCCCAAG	0.532													12	54					0	0	1	0	0
AHSP	51327	broad.mit.edu	37	16	31539891	31539891	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:31539891G>A	uc002ecj.2	+	3	273	c.188G>A	c.(187-189)CGA>CAA	p.R63Q		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	63					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						CCCCAAGAGCGAGACAAGGCT	0.547													28	41					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	32070619	32070619	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:32070619C>T	uc002ecv.1	+	1		c.72C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		TGCAAGGCTTCTGGATACACC	0.537													11	74					0	0	1	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163510	32163510	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:32163510G>A	uc002ecx.2	-	2		c.261C>T				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						TGCCCTTCGGGGTGATGCCAG	0.547													10	78					0	0	1	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163513	32163513	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:32163513G>A	uc002ecx.2	-	2		c.258C>T				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						CCTTCGGGGTGATGCCAGTCA	0.547													18	72					0	0	1	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163819	32163819	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:32163819G>A	uc002ecx.2	-	1		c.56C>T				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						GCGGAGCTGGGAGTTGATGTA	0.527													7	69					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	32190846	32190846	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:32190846G>A	uc010vfv.1	-	7		c.978C>T								Homo sapiens cDNA FLJ60890 complete cds, moderately similar to HECT domain and RCC1-like domain-containing protein 2.																		GGTACCTCAGGAAACTCTCAC	0.458													6	32					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	32192678	32192678	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:32192678G>A	uc010vfv.1	-	5		c.668C>T								Homo sapiens cDNA FLJ60890 complete cds, moderately similar to HECT domain and RCC1-like domain-containing protein 2.																		GGCGTTCCGTGAACATCCCTG	0.542													8	10					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	32264999	32264999	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:32264999C>T	uc002ecy.2	+	1		c.356C>T			uc010cav.1_RNA					Homo sapiens mRNA for TP53TG3b, complete cds.																		AACAAAGGGTCGGTGGCCTCT	0.572													20	100					0	0	1	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32891041	32891041	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:32891041C>T	uc002edh.1	-	3	189	c.13G>A	c.(13-15)GGT>AGT	p.G5S	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						TACATCCCACCCTGGGGGACA	0.597													22	70					0	0	1	0	0
MIR1826	100302162	broad.mit.edu	37	16	33965525	33965525	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:33965525C>T	hsa-mir-1826|MI0008194	+			c.18C>T																				0						ATCGACACTTCGAACGCAATT	0.572													9	33					0	0	1	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404409	34404409	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:34404409C>T	uc002edv.1	-	1		c.354G>A				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						TTGTAGAAGCCCTCATCAGGA	0.502													23	60					0	0	1	0	0
VPS35	55737	broad.mit.edu	37	16	46716030	46716030	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:46716030G>A	uc002eef.3	-	3	259	c.160C>T	c.(160-162)CGG>TGG	p.R54W	VPS35_uc002eed.2_5'Flank|VPS35_uc002eee.2_Missense_Mutation_p.R15W	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	54					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				ATAGAAGTCCGGAGTTCACCA	0.333													10	41					0	0	1	0	0
VPS35	55737	broad.mit.edu	37	16	46717501	46717501	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:46717501G>A	uc002eef.3	-	2	120	c.21C>T	c.(19-21)TCC>TCT	p.S7S	VPS35_uc002eee.2_5'UTR	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	7					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CATCCTGAGGGGACTGCTGTG	0.433													5	28					0	0	1	0	0
MYLK3	91807	broad.mit.edu	37	16	46746655	46746655	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:46746655G>A	uc002eei.3	-	10	2135	c.2019C>T	c.(2017-2019)TTC>TTT	p.F673F	MYLK3_uc010vge.1_Silent_p.F332F	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	673	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity	p.F673F(1)|p.F752F(1)		stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CAGGAGTGCCGAAGTTCACCT	0.547													15	45					0	0	1	0	0
MYLK3	91807	broad.mit.edu	37	16	46755035	46755035	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:46755035C>T	uc002eei.3	-	9	2101	c.1985G>A	c.(1984-1986)AGG>AAG	p.R662K	MYLK3_uc010vge.1_Missense_Mutation_p.R321K	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	662	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				ACCCCCTTACCTTCTGGCCAG	0.448													15	136					0	0	1	0	0
MYLK3	91807	broad.mit.edu	37	16	46771680	46771680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:46771680G>A	uc002eei.3	-	3	1060	c.944C>T	c.(943-945)CCT>CTT	p.P315L	MYLK3_uc010vge.1_Intron|MYLK3_uc002eej.1_5'UTR	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	315					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CAGCCCTGGAGGCCCTGGGCA	0.657													30	51					0	0	1	0	0
MYLK3	91807	broad.mit.edu	37	16	46772028	46772028	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:46772028C>T	uc002eei.3	-	3	712	c.596G>A	c.(595-597)GGG>GAG	p.G199E	MYLK3_uc010vge.1_Intron|MYLK3_uc002eej.1_5'UTR	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	199				G -> R (in Ref. 1; CAC42766).	cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CTCCGCTGTCCCCTCCAGCAC	0.612													3	9					0	0	1	0	0
MYLK3	91807	broad.mit.edu	37	16	46781659	46781659	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:46781659C>T	uc002eei.3	-	1	563	c.447G>A	c.(445-447)AGG>AGA	p.R149R	MYLK3_uc010vge.1_Intron	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	149					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				GGCTGCCTCTCCTCCAGGGCA	0.667													22	88					0	0	1	0	0
GPT2	84706	broad.mit.edu	37	16	46931640	46931640	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:46931640C>T	uc002eel.2	+	3	418	c.324C>T	c.(322-324)TTC>TTT	p.F108F	GPT2_uc002eem.2_Silent_p.F8F	NM_133443	NP_597700	Q8TD30	ALAT2_HUMAN	glutamic pyruvate transaminase 2 isoform 1	108					2-oxoglutarate metabolic process|cellular amino acid biosynthetic process|L-alanine metabolic process	mitochondrial matrix	L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2		all_cancers(37;0.0276)|all_epithelial(9;0.0498)|all_lung(18;0.0522)			L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CAATCACCTTCCTCCGGCAGG	0.657													17	59					0	0	1	0	0
GPT2	84706	broad.mit.edu	37	16	46943652	46943652	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:46943652C>T	uc002eel.2	+	6	727	c.633C>T	c.(631-633)ATC>ATT	p.I211I	GPT2_uc002eem.2_Silent_p.I111I	NM_133443	NP_597700	Q8TD30	ALAT2_HUMAN	glutamic pyruvate transaminase 2 isoform 1	211					2-oxoglutarate metabolic process|cellular amino acid biosynthetic process|L-alanine metabolic process	mitochondrial matrix	L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2		all_cancers(37;0.0276)|all_epithelial(9;0.0498)|all_lung(18;0.0522)			L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GTGTGATGATCCCCATCCCAC	0.537													23	73					0	0	1	0	0
NETO2	81831	broad.mit.edu	37	16	47117421	47117421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:47117421G>A	uc002eer.1	-	9	1674	c.1289C>T	c.(1288-1290)ACC>ATC	p.T430I	NETO2_uc002eeq.1_Missense_Mutation_p.T165I|NETO2_uc010vgf.1_Missense_Mutation_p.T287I	NM_018092	NP_060562	Q8NC67	NETO2_HUMAN	neuropilin- and tolloid-like protein 2	430	Cytoplasmic (Potential).					integral to membrane	receptor activity				0		all_cancers(37;0.00114)|all_lung(18;0.00432)|Lung NSC(13;0.0384)|Breast(268;0.174)				GCGGGAGGCGGTGGAGGAGCG	0.527										HNSCC(25;0.065)			39	123					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48117823	48117823	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48117823C>T	uc002efc.1	-	28	4336	c.3990G>A	c.(3988-3990)GGG>GGA	p.G1330G	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1330	ABC transporter 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				CCTATACCTTCCCATTTTCCA	0.483													26	84					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48119606	48119606	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48119606G>A	uc002efc.1	-	27	4072	c.3726C>T	c.(3724-3726)CTC>CTT	p.L1242L	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1242	ABC transporter 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				ATTTTTCTGGGAGTTTCATTA	0.408													28	129					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48139140	48139140	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48139140G>A	uc002efc.1	-	19	2929	c.2583C>T	c.(2581-2583)TTC>TTT	p.F861F	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	861	ABC transmembrane type-1 2.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				ACACCAGCATGAACACCATGC	0.572													27	58					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48145489	48145489	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48145489C>T	uc002efc.1	-	15	2555	c.2209G>A	c.(2209-2211)GTT>ATT	p.V737I	ABCC12_uc002eey.1_Intron|ABCC12_uc002eez.1_Intron|ABCC12_uc002efa.1_Intron|ABCC12_uc002efb.1_Intron|ABCC12_uc002efd.1_Intron	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	737						integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				GGATTCTAACCGATTATACCA	0.448													82	339					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48164723	48164723	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48164723C>T	uc002efc.1	-	8	1558	c.1212G>A	c.(1210-1212)GCG>GCA	p.A404A	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Silent_p.A404A	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	404						integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				GAGAGACATTCGCTTCAGCCA	0.423													20	40					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48167728	48167728	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48167728C>T	uc002efc.1	-	7	1344	c.998G>A	c.(997-999)AGA>AAA	p.R333K	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.R333K|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	333	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				CAGTAATTTTCTTTCCCTCCT	0.443													19	45					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48201473	48201473	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48201473G>A	uc002eff.1	-	28	4340	c.3990C>T	c.(3988-3990)CTC>CTT	p.L1330L	ABCC11_uc002efg.1_Silent_p.L1330L|ABCC11_uc002efh.1_Silent_p.L1292L|ABCC11_uc010cbg.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	1330	ABC transporter 2.|Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GGGCAATGACGAGCACGGTGC	0.567									Cerumen_Type				35	83					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48248804	48248804	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48248804G>A	uc002eff.1	-	8	1586	c.1236C>T	c.(1234-1236)CTC>CTT	p.L412L	ABCC11_uc002efg.1_Silent_p.L412L|ABCC11_uc002efh.1_Silent_p.L412L|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	412	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				TTGACGCTGTGAGTTTCAGCT	0.502									Cerumen_Type				18	41					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48250140	48250140	+	Missense_Mutation	SNP	G	A	A	rs61739612	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48250140G>A	uc002eff.1	-	6	1186	c.836C>T	c.(835-837)CCC>CTC	p.P279L	ABCC11_uc002efg.1_Missense_Mutation_p.P279L|ABCC11_uc002efh.1_Missense_Mutation_p.P279L|ABCC11_uc010vgk.1_5'Flank|ABCC11_uc010vgl.1_Missense_Mutation_p.P279L	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	279	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CAGTACTAGGGGTCCATAGCA	0.483									Cerumen_Type				39	143					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48258241	48258241	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48258241G>A	uc002eff.1	-	4	845	c.495C>T	c.(493-495)TTC>TTT	p.F165F	ABCC11_uc002efg.1_Silent_p.F165F|ABCC11_uc002efh.1_Silent_p.F165F|ABCC11_uc010vgl.1_Silent_p.F165F	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	165	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GAAGTGCATCGAAAATCAACC	0.512									Cerumen_Type				25	53					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48261760	48261760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48261760G>A	uc002eff.1	-	3	702	c.352C>T	c.(352-354)CCT>TCT	p.P118S	ABCC11_uc002efg.1_Missense_Mutation_p.P118S|ABCC11_uc002efh.1_Missense_Mutation_p.P118S|ABCC11_uc010vgl.1_Missense_Mutation_p.P118S	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	118	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GACAGTGGAGGGATGGTGTTC	0.522									Cerumen_Type				44	128					0	0	1	0	0
N4BP1	9683	broad.mit.edu	37	16	48580147	48580147	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:48580147G>A	uc002efp.2	-	6	2481	c.2244C>T	c.(2242-2244)TTC>TTT	p.F748F		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	748					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				TGTCCCCCACGAACGTGTACT	0.517													6	87					0	0	1	0	0
C16orf78	123970	broad.mit.edu	37	16	49407996	49407996	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:49407996C>T	uc002efr.2	+	1	189	c.146C>T	c.(145-147)CCC>CTC	p.P49L		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	49										central_nervous_system(1)	1						AAACAAGCTCCCGAGGTGGGT	0.338													18	62					0	0	1	0	0
C16orf78	123970	broad.mit.edu	37	16	49433061	49433061	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:49433061G>A	uc002efr.2	+	5	713	c.670G>A	c.(670-672)GAG>AAG	p.E224K		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	224										central_nervous_system(1)	1						GTTATCCAAGGAGAACATTCG	0.438													11	87					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49557646	49557646	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:49557646G>A	uc002efs.2	-	8	4012	c.3714C>T	c.(3712-3714)TTC>TTT	p.F1238F	ZNF423_uc010vgn.1_Silent_p.F1121F	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	1238	C2H2-type 29.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TGGCCTGGACGAAGACTAGAC	0.587													10	32					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49670531	49670531	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:49670531C>T	uc002efs.2	-	5	2830	c.2532G>A	c.(2530-2532)GGG>GGA	p.G844G	ZNF423_uc010vgn.1_Silent_p.G727G	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	844					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TTGGGGGTACCCCATTGGCCG	0.597													10	27					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49671965	49671965	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:49671965G>A	uc002efs.2	-	5	1396	c.1098C>T	c.(1096-1098)TCC>TCT	p.S366S	ZNF423_uc010vgn.1_Silent_p.S249S	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	366					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CGCTGCTCATGGAGGCCACGC	0.662													4	26					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49823408	49823408	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:49823408C>T	uc002efs.2	-	3	364	c.66G>A	c.(64-66)GTG>GTA	p.V22V		NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	22					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CTGCTGCTGTCACGGAGGAAT	0.572													5	54					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49823439	49823439	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:49823439G>A	uc002efs.2	-	3	333	c.35C>T	c.(34-36)TCA>TTA	p.S12L		NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	12					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CGAGAAGTCTGAGGCCTCCCC	0.582													23	35					0	0	1	0	0
ADCY7	113	broad.mit.edu	37	16	50324451	50324451	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50324451C>T	uc002egd.1	+	2	523	c.255C>T	c.(253-255)GTC>GTT	p.V85V	ADCY7_uc002egb.1_Silent_p.V85V|ADCY7_uc002egc.1_Silent_p.V85V	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	85					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	TGATGTACGTCGAGTGTCTCC	0.642													29	52					0	0	1	0	0
ADCY7	113	broad.mit.edu	37	16	50332845	50332845	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50332845G>A	uc002egd.1	+	7	1247	c.979G>A	c.(979-981)GGC>AGC	p.G327S	ADCY7_uc002egb.1_Missense_Mutation_p.G327S|ADCY7_uc002egc.1_Missense_Mutation_p.G327S	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	327	Cytoplasmic (Potential).|Guanylate cyclase 1.				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	CAAGATCCTCGGCGACTGCTA	0.627													21	79					0	0	1	0	0
BRD7	29117	broad.mit.edu	37	16	50388763	50388763	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50388763G>A	uc002egf.1	-	4	396	c.329C>T	c.(328-330)CCT>CTT	p.P110L	BRD7_uc002ege.1_Missense_Mutation_p.P110L	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7	110					cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				TAATCTCACAGGGGCGTGACA	0.443													28	116					0	0	1	0	0
NKD1	85407	broad.mit.edu	37	16	50667106	50667106	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50667106C>T	uc002egg.1	+	10	1051	c.827C>T	c.(826-828)TCC>TTC	p.S276F		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	276					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		TTCCTAGGCTCCCCTTCCGTG	0.468													25	55					0	0	1	0	0
NKD1	85407	broad.mit.edu	37	16	50667441	50667441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50667441C>T	uc002egg.1	+	10	1386	c.1162C>T	c.(1162-1164)CCG>TCG	p.P388S		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	388					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		GGCTGCCAGCCCGGCCCTCCT	0.716													4	22					0	0	1	0	0
SNX20	124460	broad.mit.edu	37	16	50707809	50707809	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50707809C>T	uc002egk.2	-	4	632	c.459G>A	c.(457-459)ATG>ATA	p.M153I	SNX20_uc010vgp.1_Intron|SNX20_uc002egi.3_Intron	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	153	PX.				cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						GCTCACAGATCATCTCCTCAG	0.632													10	31					0	0	1	0	0
SNX20	124460	broad.mit.edu	37	16	50707821	50707821	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50707821G>A	uc002egk.2	-	4	620	c.447C>T	c.(445-447)TTC>TTT	p.F149F	SNX20_uc010vgp.1_Intron|SNX20_uc002egi.3_Intron	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	149	PX.				cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						TCTCCTCAGCGAAGTTCCCAG	0.617													7	41					0	0	1	0	0
SNX20	124460	broad.mit.edu	37	16	50707846	50707846	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50707846G>A	uc002egk.2	-	4	595	c.422C>T	c.(421-423)CCC>CTC	p.P141L	SNX20_uc010vgp.1_Intron|SNX20_uc002egi.3_Intron	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	141	PX.				cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						GTGCTTCCTGGGAAACTCCAC	0.602													7	58					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50733414	50733414	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50733414C>T	uc002egm.1	+	2	194	c.89C>T	c.(88-90)TCG>TTG	p.S30L	NOD2_uc010cbj.1_Missense_Mutation_p.S3L|NOD2_uc010cbk.1_Missense_Mutation_p.S3L|NOD2_uc002egl.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	30	CARD 1.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				GAAATGTGCTCGCAGGAGGCT	0.612													88	166					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50733542	50733542	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50733542G>A	uc002egm.1	+	2	322	c.217G>A	c.(217-219)GGC>AGC	p.G73S	NOD2_uc010cbj.1_Missense_Mutation_p.G46S|NOD2_uc010cbk.1_Missense_Mutation_p.G46S|NOD2_uc002egl.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	73	CARD 1.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				GGACTACGAGGGCTTCCACCT	0.637													27	60					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50733833	50733833	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50733833A>T	uc002egm.1	+	2	613	c.508A>T	c.(508-510)ATC>TTC	p.I170F	NOD2_uc010cbj.1_Missense_Mutation_p.I143F|NOD2_uc010cbk.1_Missense_Mutation_p.I143F|NOD2_uc002egl.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	170	CARD 2.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				ATGTGATGAAATCAGGTTGCC	0.552													8	45					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50741774	50741774	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50741774G>A	uc002egm.1	+	3	654	c.549G>A	c.(547-549)AGG>AGA	p.R183R	NOD2_uc010cbk.1_Silent_p.R156R|NOD2_uc002egl.1_Intron|NOD2_uc010cbl.1_5'Flank|NOD2_uc010cbm.1_5'Flank|NOD2_uc010cbn.1_5'Flank|NOD2_uc010cbo.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	183	CARD 2.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				AGGCAAGAAGGCTGCTTGATC	0.478													37	84					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50744591	50744591	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50744591C>T	uc002egm.1	+	4	874	c.769C>T	c.(769-771)CTG>TTG	p.L257L	NOD2_uc010cbk.1_Silent_p.L230L|NOD2_uc002egl.1_Silent_p.L35L|NOD2_uc010cbl.1_Silent_p.L35L|NOD2_uc010cbm.1_Silent_p.L35L|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	257					activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				AGAGAATGTCCTGGAGGTCTG	0.607													6	33					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50744969	50744969	+	Missense_Mutation	SNP	G	A	A	rs104895477		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50744969G>A	uc002egm.1	+	4	1252	c.1147G>A	c.(1147-1149)GAG>AAG	p.E383K	NOD2_uc010cbk.1_Missense_Mutation_p.E356K|NOD2_uc002egl.1_Missense_Mutation_p.E161K|NOD2_uc010cbl.1_Missense_Mutation_p.E161K|NOD2_uc010cbm.1_Missense_Mutation_p.E161K|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	383	NACHT.		E -> K (in BS).		activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				TGGCTTTGACGAGTTCAAGTT	0.542													24	55					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50750524	50750524	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50750524G>A	uc002egm.1	+	5	2594	c.2489G>A	c.(2488-2490)CGA>CAA	p.R830Q	NOD2_uc010cbl.1_Missense_Mutation_p.R608Q|NOD2_uc010cbm.1_Missense_Mutation_p.R608Q|NOD2_uc010cbn.1_Intron|NOD2_uc010cbo.1_Intron|NOD2_uc010cbp.1_Intron|NOD2_uc010cbq.1_5'UTR|NOD2_uc010cbr.1_Intron	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	830	LRR 2.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				ATCTCAGACCGAGGCATCTGC	0.428													17	28					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50756563	50756563	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50756563G>A	uc002egm.1	+	8	2850	c.2745G>A	c.(2743-2745)GGG>GGA	p.G915G	NOD2_uc010cbl.1_Silent_p.G665G|NOD2_uc010cbm.1_Silent_p.G665G|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_RNA|NOD2_uc010cbq.1_Silent_p.G53G|NOD2_uc010cbr.1_RNA|NOD2_uc010vgq.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	915	LRR 5.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				GTGACGAGGGGGCCCAGGCCC	0.517													164	349					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50757272	50757272	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50757272G>A	uc002egm.1	+	9	2964	c.2859G>A	c.(2857-2859)AAG>AAA	p.K953K	NOD2_uc010cbl.1_Silent_p.K703K|NOD2_uc010cbm.1_Silent_p.K703K|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_RNA|NOD2_uc010cbq.1_Silent_p.K91K|NOD2_uc010cbr.1_RNA|NOD2_uc010vgq.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	953					activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				TGCTGGCAAAGAACGTCATGC	0.463													8	33					0	0	1	0	0
CYLD	1540	broad.mit.edu	37	16	50783766	50783766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50783766C>T	uc002egp.1	+	4	572	c.157C>T	c.(157-159)CGT>TGT	p.R53C	CYLD_uc002egn.1_Missense_Mutation_p.R53C|CYLD_uc002ego.2_Missense_Mutation_p.R53C|CYLD_uc010cbs.1_Missense_Mutation_p.R53C|CYLD_uc002egq.1_Missense_Mutation_p.R53C|CYLD_uc002egr.1_Missense_Mutation_p.R53C|CYLD_uc002egs.1_Missense_Mutation_p.R53C	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	53					cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				TATTCAAGATCGTTCTGTGGG	0.378			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				30	98					0	0	1	0	0
CYLD	1540	broad.mit.edu	37	16	50813813	50813813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:50813813C>T	uc002egp.1	+	9	1791	c.1376C>T	c.(1375-1377)CCC>CTC	p.P459L	CYLD_uc002ego.2_Missense_Mutation_p.P456L|CYLD_uc010cbs.1_Missense_Mutation_p.P456L|CYLD_uc002egq.1_Missense_Mutation_p.P456L|CYLD_uc002egr.1_Missense_Mutation_p.P456L|CYLD_uc002egs.1_Missense_Mutation_p.P456L	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	459	Interaction with TRAF2.|Interaction with TRIP.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				GAGAGTCCACCCTTGGCCATG	0.512			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				17	87					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51171299	51171299	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51171299G>A	uc010vgs.1	-	3	3730	c.3699C>T	c.(3697-3699)TTC>TTT	p.F1233F	SALL1_uc010vgr.1_Silent_p.F1136F|SALL1_uc010cbv.2_Silent_p.F85F	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1233					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ACTGATTCCAGAAGCTGGAAG	0.542													15	36					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51172764	51172764	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51172764G>A	uc010vgs.1	-	2	3400	c.3369C>T	c.(3367-3369)CTC>CTT	p.L1123L	SALL1_uc010vgr.1_Silent_p.L1026L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1123					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GCAGAGCAGGGAGCAGAACTG	0.567													13	51					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51173332	51173332	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51173332C>T	uc010vgs.1	-	2	2832	c.2801G>A	c.(2800-2802)AGC>AAC	p.S934N	SALL1_uc010vgr.1_Missense_Mutation_p.S837N|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	934					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CTCCTGCGTGCTGTTGGACGG	0.557													9	65					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51173447	51173447	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51173447C>T	uc010vgs.1	-	2	2717	c.2686G>A	c.(2686-2688)GAT>AAT	p.D896N	SALL1_uc010vgr.1_Missense_Mutation_p.D799N|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	896					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GTCAGGACATCCCCCTCGATG	0.537													17	53					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174230	51174230	+	Missense_Mutation	SNP	G	A	A	rs61731136	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51174230G>A	uc010vgs.1	-	2	1934	c.1903C>T	c.(1903-1905)CCG>TCG	p.P635S	SALL1_uc010vgr.1_Missense_Mutation_p.P538S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	635					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CTCGCCGTCGGGACTGAGTTG	0.632													24	47					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174243	51174243	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51174243G>A	uc010vgs.1	-	2	1921	c.1890C>T	c.(1888-1890)GTC>GTT	p.V630V	SALL1_uc010vgr.1_Silent_p.V533V|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	630					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CTGAGTTGGTGACCATGCCAC	0.637													16	54					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174260	51174260	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51174260C>T	uc010vgs.1	-	2	1904	c.1873G>A	c.(1873-1875)GAA>AAA	p.E625K	SALL1_uc010vgr.1_Missense_Mutation_p.E528K|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	625					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CCACTCTCTTCGCTTTTGCCA	0.642													11	49					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174630	51174630	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51174630C>T	uc010vgs.1	-	2	1534	c.1503G>A	c.(1501-1503)GAG>GAA	p.E501E	SALL1_uc010vgr.1_Silent_p.E404E|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	501					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GAGGGTATTTCTCTTTGTGGC	0.517													30	87					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174768	51174768	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51174768C>T	uc010vgs.1	-	2	1396	c.1365G>A	c.(1363-1365)GCG>GCA	p.A455A	SALL1_uc010vgr.1_Silent_p.A358A|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	455	C2H2-type 1.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CAAAGACCTTCGCGCAGAACC	0.512													44	82					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174906	51174906	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51174906G>A	uc010vgs.1	-	2	1258	c.1227C>T	c.(1225-1227)ATC>ATT	p.I409I	SALL1_uc010vgr.1_Silent_p.I312I|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	409					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CAGTTGTTCCGATGTTGGGCA	0.478													37	106					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174964	51174964	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51174964G>A	uc010vgs.1	-	2	1200	c.1169C>T	c.(1168-1170)CCA>CTA	p.P390L	SALL1_uc010vgr.1_Missense_Mutation_p.P293L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	390					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AGGTAGAAGTGGATTAGACGC	0.522													25	70					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51175409	51175409	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51175409G>A	uc010vgs.1	-	2	755	c.724C>T	c.(724-726)CAC>TAC	p.H242Y	SALL1_uc010vgr.1_Missense_Mutation_p.H145Y|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	242					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGCAGCTGGTGGATCTGCTGC	0.547													25	121					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51175977	51175977	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:51175977G>A	uc010vgs.1	-	2	187	c.156C>T	c.(154-156)TTC>TTT	p.F52F	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	52					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ATAATTCAAAGAACTCGGCAC	0.453													53	146					0	0	1	0	0
TOX3	27324	broad.mit.edu	37	16	52473641	52473641	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:52473641C>T	uc002egw.2	-	7	1398	c.1227G>A	c.(1225-1227)TCG>TCA	p.S409S	TOX3_uc010vgt.1_Silent_p.S404S|TOX3_uc010vgu.1_Silent_p.S409S	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	409					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						CCCCAATGTTCGAGGGCATGT	0.542													50	114					0	0	1	0	0
TOX3	27324	broad.mit.edu	37	16	52473859	52473859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:52473859C>T	uc002egw.2	-	7	1180	c.1009G>A	c.(1009-1011)GCC>ACC	p.A337T	TOX3_uc010vgt.1_Missense_Mutation_p.A332T|TOX3_uc010vgu.1_Missense_Mutation_p.A337T	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	337					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						ATGGTCTGGGCTTCTGCTGAC	0.433													16	48					0	0	1	0	0
TOX3	27324	broad.mit.edu	37	16	52502448	52502448	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:52502448C>T	uc002egw.2	-	2	297	c.126G>A	c.(124-126)GCG>GCA	p.A42A	TOX3_uc010vgt.1_Silent_p.A38A|TOX3_uc010vgu.1_Silent_p.A42A	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	42					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						ACGCATTGTTCGCCTCAGCCA	0.353													26	98					0	0	1	0	0
CHD9	80205	broad.mit.edu	37	16	53190843	53190843	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:53190843T>G	uc002ehb.2	+	1	1006	c.842T>G	c.(841-843)ATA>AGA	p.I281R	CHD9_uc002egy.2_Missense_Mutation_p.I281R|CHD9_uc002egz.1_Missense_Mutation_p.I281R|CHD9_uc002eha.1_Missense_Mutation_p.I281R|CHD9_uc002ehc.2_Missense_Mutation_p.I281R	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	281	Ser-rich.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				AGTAATCATATATCACCAAAC	0.343													36	78					0	0	1	0	0
CHD9	80205	broad.mit.edu	37	16	53340208	53340208	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:53340208C>T	uc002ehb.2	+	31	6843	c.6679C>T	c.(6679-6681)CAG>TAG	p.Q2227*	CHD9_uc002egy.2_Nonsense_Mutation_p.Q2227*|CHD9_uc002ehc.2_Nonsense_Mutation_p.Q2228*|CHD9_uc002ehf.2_Nonsense_Mutation_p.Q1341*|CHD9_uc010cbw.2_Nonsense_Mutation_p.Q293*|CHD9_uc002ehg.1_Nonsense_Mutation_p.Q234*	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2227					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				GAGCACTACCCAGGATGAGAC	0.398													25	48					0	0	1	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53639522	53639522	+	Missense_Mutation	SNP	G	A	A	rs151332923	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:53639522G>A	uc002ehp.2	-	26	3770	c.3706C>T	c.(3706-3708)CGC>TGC	p.R1236C	RPGRIP1L_uc002eho.3_Missense_Mutation_p.R1156C|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.R1190C|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.R1202C|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.R1190C	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	1236					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				ACGGTGAAGCGAAGGCTGGTA	0.517													5	65					0	0	1	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53679563	53679563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:53679563G>A	uc002ehp.2	-	17	2721	c.2657C>T	c.(2656-2658)TCG>TTG	p.S886L	RPGRIP1L_uc002eho.3_Missense_Mutation_p.S886L|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.S886L|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.S886L|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.S886L	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	886					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				ATGTGCCAACGAAATCAGAGG	0.328													15	40					0	0	1	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53686563	53686563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:53686563G>A	uc002ehp.2	-	15	2100	c.2036C>T	c.(2035-2037)ACC>ATC	p.T679I	RPGRIP1L_uc002eho.3_Missense_Mutation_p.T679I|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.T679I|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.T679I|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.T679I	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	679	C2 1.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				GACCTCAAGGGTGATAGTATT	0.363													15	73					0	0	1	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53721836	53721836	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:53721836G>A	uc002ehp.2	-	5	635	c.571C>T	c.(571-573)CCC>TCC	p.P191S	RPGRIP1L_uc002eho.3_Missense_Mutation_p.P191S|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.P191S|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.P191S|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.P191S|RPGRIP1L_uc002ehq.1_Missense_Mutation_p.P191S	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	191					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				GTAAACATGGGATGTGGAGTT	0.308													17	168					0	0	1	0	0
MMP2	4313	broad.mit.edu	37	16	55523612	55523612	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55523612C>T	uc002ehz.3	+	7	1367	c.1056C>T	c.(1054-1056)CCC>CCT	p.P352P	MMP2_uc010vhd.1_Silent_p.P276P|MMP2_uc010ccc.2_Silent_p.P302P	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	352	Fibronectin type-II 3.|Collagen-binding.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	GTGTCTTCCCCTTCACTTTCC	0.577													60	141					0	0	1	0	0
MMP2	4313	broad.mit.edu	37	16	55525834	55525834	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55525834C>T	uc002ehz.3	+	8	1613	c.1302C>T	c.(1300-1302)TCC>TCT	p.S434S	MMP2_uc010vhd.1_Silent_p.S358S|MMP2_uc010ccc.2_Silent_p.S384S|MMP2_uc002eia.3_5'Flank	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	434	Required for inhibitor TIMP2 binding.|Collagenase-like 2.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	TCCGTCTGTCCCAGGATGACA	0.617													13	31					0	0	1	0	0
MMP2	4313	broad.mit.edu	37	16	55539335	55539335	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55539335C>T	uc002ehz.3	+	13	2275	c.1964C>T	c.(1963-1965)TCC>TTC	p.S655F	MMP2_uc010vhd.1_Missense_Mutation_p.S579F|MMP2_uc010ccc.2_Missense_Mutation_p.S605F|MMP2_uc002eia.3_Missense_Mutation_p.S152F	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	655	Required for inhibitor TIMP2 binding.|Hemopexin-like 4.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	AGCATCAAATCCGACTGGCTA	0.552													57	89					0	0	1	0	0
SLC6A2	6530	broad.mit.edu	37	16	55690819	55690819	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55690819C>T	uc002eif.2	+	2	324	c.213C>T	c.(211-213)GGC>GGT	p.G71G	SLC6A2_uc010ccd.2_Silent_p.G71G|SLC6A2_uc002eig.2_Silent_p.G71G|SLC6A2_uc002eih.2_Silent_p.G71G	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	71	Helical; Name=1; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	CCGTAGTCGGCTTCGCAGTGG	0.672													25	87					0	0	1	0	0
SLC6A2	6530	broad.mit.edu	37	16	55705875	55705875	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55705875C>T	uc002eif.2	+	4	543	c.432C>T	c.(430-432)ATC>ATT	p.I144I	SLC6A2_uc010ccd.2_Silent_p.I144I|SLC6A2_uc002eig.2_Silent_p.I144I|SLC6A2_uc002eih.2_Silent_p.I144I|SLC6A2_uc002eii.2_Silent_p.I39I	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	144	Helical; Name=3; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	TCATCCTGATCGCCCTGTACG	0.607													15	37					0	0	1	0	0
SLC6A2	6530	broad.mit.edu	37	16	55733486	55733486	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55733486G>A	uc002eif.2	+	12	1621	c.1510G>A	c.(1510-1512)GAC>AAC	p.D504N	SLC6A2_uc010ccd.2_Missense_Mutation_p.D504N|SLC6A2_uc002eig.2_Missense_Mutation_p.D504N|SLC6A2_uc002eih.2_Missense_Mutation_p.D504N|SLC6A2_uc002eii.2_Missense_Mutation_p.D399N|SLC6A2_uc002eij.2_Missense_Mutation_p.D218N	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	504					synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	GTTCAGCAACGACATCCAGCA	0.592													5	49					0	0	1	0	0
CES1	1066	broad.mit.edu	37	16	55862776	55862776	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55862776G>A	uc002eim.2	-	2	268	c.160C>T	c.(160-162)CCT>TCT	p.P54S	CES1_uc002eil.2_Missense_Mutation_p.P55S|CES1_uc002ein.2_Missense_Mutation_p.P54S	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	54					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	TTGGCAAAAGGGATTCCCAGG	0.557													7	38					0	0	1	0	0
CES7	221223	broad.mit.edu	37	16	55880415	55880415	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55880415G>A	uc002eip.2	-	13	1825	c.1676C>T	c.(1675-1677)TCC>TTC	p.S559F	CES7_uc002eio.2_Missense_Mutation_p.S509F|CES7_uc002eiq.2_Missense_Mutation_p.S320F|CES7_uc002eir.2_Missense_Mutation_p.S453F	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	559						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		GAAAGTTAAGGAAGAAAGAGG	0.483													51	153					0	0	1	0	0
CES7	221223	broad.mit.edu	37	16	55907804	55907804	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55907804C>T	uc002eip.2	-	2	368	c.219G>A	c.(217-219)ACG>ACA	p.T73T	CES7_uc002eio.2_Silent_p.T73T|CES7_uc002eiq.2_5'UTR|CES7_uc002eir.2_5'UTR	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	73						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		GCTGCGGGTTCGTAAATCGCA	0.592													8	14					0	0	1	0	0
CES7	221223	broad.mit.edu	37	16	55909079	55909079	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:55909079G>A	uc002eip.2	-	1	204	c.55C>T	c.(55-57)CTT>TTT	p.L19F	CES7_uc002eio.2_Missense_Mutation_p.L19F|CES7_uc002eiq.2_Intron|CES7_uc002eir.2_Intron	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	19						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		GGGGCTGCAAGGACCCAGATA	0.532													29	115					0	0	1	0	0
NUDT21	11051	broad.mit.edu	37	16	56480599	56480599	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:56480599G>A	uc002eja.2	-	3	467	c.320C>T	c.(319-321)CCT>CTT	p.P107L	NUDT21_uc002eiz.2_Missense_Mutation_p.P32L	NM_007006	NP_008937	O43809	CPSF5_HUMAN	cleavage and polyadenylation specific factor 5	107	Nudix hydrolase.|Necessary for interactions with PAPOLA and PABPN1.|Necessary for RNA-binding.				mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	centrosome|mRNA cleavage factor complex|paraspeckles	AU-rich element binding|histone deacetylase binding|hydrolase activity|mRNA binding|protein homodimerization activity				0						TTCACCACCAGGTCTGTATAA	0.318													9	68					0	0	1	0	0
NUDT21	11051	broad.mit.edu	37	16	56481894	56481894	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:56481894G>A	uc002eja.2	-	2	271	c.124C>T	c.(124-126)CTT>TTT	p.L42F	NUDT21_uc002eiz.2_5'UTR	NM_007006	NP_008937	O43809	CPSF5_HUMAN	cleavage and polyadenylation specific factor 5	42	Necessary for RNA-binding.				mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	centrosome|mRNA cleavage factor complex|paraspeckles	AU-rich element binding|histone deacetylase binding|hydrolase activity|mRNA binding|protein homodimerization activity				0						TAATTGGTAAGAGGGTACCTG	0.393													7	38					0	0	1	0	0
BBS2	583	broad.mit.edu	37	16	56519580	56519580	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:56519580G>A	uc002ejd.2	-	16	2215	c.1981C>T	c.(1981-1983)CGC>TGC	p.R661C		NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	661					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						TTGTTACAGCGAATTTTATAT	0.378									Bardet-Biedl_syndrome				24	209					0	0	1	0	0
MT1F	4494	broad.mit.edu	37	16	56693046	56693046	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:56693046G>A	uc002ejt.2	+	3	272	c.156G>A	c.(154-156)GGG>GGA	p.G52G		NM_005949	NP_005940	P04733	MT1F_HUMAN	metallothionein 1F	52	Alpha.					cytoplasm	cadmium ion binding|copper ion binding|zinc ion binding				0						TTTGCAAAGGGGCGTCAGAGA	0.527													10	153					0	0	1	0	0
SLC12A3	6559	broad.mit.edu	37	16	56899349	56899349	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:56899349G>A	uc010ccm.2	+	1	231	c.202G>A	c.(202-204)GAG>AAG	p.E68K	SLC12A3_uc002ekd.3_Missense_Mutation_p.E68K|SLC12A3_uc010ccn.2_Missense_Mutation_p.E68K	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	68	Cytoplasmic (Potential).		E -> K (in GS).		sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	GCCCACATATGAGCACTATGC	0.592													37	109					0	0	1	0	0
SLC12A3	6559	broad.mit.edu	37	16	56917978	56917978	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:56917978C>T	uc010ccm.2	+	14	1716	c.1687C>T	c.(1687-1689)CAA>TAA	p.Q563*	SLC12A3_uc002ekd.3_Nonsense_Mutation_p.Q563*|SLC12A3_uc010ccn.2_Nonsense_Mutation_p.Q562*	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	563	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	ACCTTCATTCCAATACTACAA	0.612													12	49					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	56996002	56996002	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:56996002C>T	uc002eki.2	+	1	168	c.111C>T	c.(109-111)CTC>CTT	p.L37L	CETP_uc002ekj.2_Silent_p.L37L	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	37					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						AGCCTGCCCTCCTGGTGTGTA	0.622													12	43					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	57003538	57003538	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57003538G>A	uc002eki.2	+	4	441	c.384G>A	c.(382-384)CAG>CAA	p.Q128Q	CETP_uc002ekj.2_Silent_p.Q128Q	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	128					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						GTATTGATCAGTCCATTGACT	0.572													10	78					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	57009030	57009030	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57009030G>A	uc002eki.2	+	10	1005	c.948G>A	c.(946-948)TGG>TGA	p.W316*	CETP_uc002ekj.2_Nonsense_Mutation_p.W256*	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	316					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						TGGAGACCTGGGGCTTCAACA	0.537													17	44					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	57016149	57016149	+	Missense_Mutation	SNP	C	T	T	rs111642444		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57016149C>T	uc002eki.2	+	14	1378	c.1321C>T	c.(1321-1323)CGG>TGG	p.R441W	CETP_uc002ekj.2_Missense_Mutation_p.R381W	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	441					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						GGTCATGTCTCGTAAGTGTGG	0.592													16	55					0	0	1	0	0
NLRC5	84166	broad.mit.edu	37	16	57060874	57060874	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57060874C>T	uc002ekk.1	+	6	2244	c.2019C>T	c.(2017-2019)CCC>CCT	p.P673P	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Silent_p.P478P|NLRC5_uc002ekl.2_Silent_p.P478P|NLRC5_uc002ekm.2_Silent_p.P478P|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	673					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				ATGGCTGTCCCCTGGAGCCCC	0.597													24	47					0	0	1	0	0
DOK4	55715	broad.mit.edu	37	16	57507918	57507918	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57507918G>A	uc010cdb.2	-	6	931	c.633C>T	c.(631-633)TTC>TTT	p.F211F	DOK4_uc002elu.1_Silent_p.F211F|DOK4_uc002elv.3_Silent_p.F211F	NM_018110	NP_060580	Q8TEW6	DOK4_HUMAN	docking protein 4	211	IRS-type PTB.						insulin receptor binding			skin(1)	1						CTTGTGTCTGGAAGGTATAGA	0.572													10	70					0	0	1	0	0
CCDC102A	92922	broad.mit.edu	37	16	57552561	57552561	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57552561C>T	uc002elw.2	-	5	1227	c.1014G>A	c.(1012-1014)CGG>CGA	p.R338R		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	338	Potential.									ovary(1)	1						CGGCCATTTTCCGGTCCATGC	0.652													8	27					0	0	1	0	0
GPR114	221188	broad.mit.edu	37	16	57604336	57604336	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57604336C>T	uc002elx.3	+	10	1182	c.1097C>T	c.(1096-1098)CCA>CTA	p.P366L	GPR114_uc010vhr.1_Intron|GPR114_uc002ely.2_Missense_Mutation_p.P366L	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	366	Helical; Name=4; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						TCAGGGGCCCCAGCCCTCCTG	0.522													14	57					0	0	1	0	0
GPR56	9289	broad.mit.edu	37	16	57685473	57685473	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57685473C>T	uc002emb.2	+	4	718	c.426C>T	c.(424-426)TCC>TCT	p.S142S	GPR56_uc002elz.1_Intron|GPR56_uc002ema.1_5'UTR|GPR56_uc002emc.2_Silent_p.S142S|GPR56_uc002emf.2_Silent_p.S142S|GPR56_uc010vhs.1_Silent_p.S142S|GPR56_uc002emd.2_Silent_p.S142S|GPR56_uc002eme.2_Silent_p.S142S|GPR56_uc010vht.1_Silent_p.S147S|GPR56_uc002emg.3_Silent_p.S142S|GPR56_uc010vhu.1_5'UTR	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	142	Extracellular (Potential).				brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						CTGTCACCTCCTGGTGGAGCC	0.512													8	49					0	0	1	0	0
GPR97	222487	broad.mit.edu	37	16	57713104	57713104	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57713104C>T	uc002emh.2	+	5	611	c.508C>T	c.(508-510)CTG>TTG	p.L170L	GPR97_uc010vhv.1_Silent_p.L50L|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_5'Flank	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	170	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						CCGGCTCGGCCTGGGAGATGG	0.627													14	63					0	0	1	0	0
GPR97	222487	broad.mit.edu	37	16	57719769	57719770	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57719769_57719770GG>AA	uc002emh.2	+	11	1574_1575	c.1471_1472GG>AA	c.(1471-1473)GGG>AAG	p.G491K	GPR97_uc010vhv.1_Missense_Mutation_p.G371K|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_Missense_Mutation_p.G99K	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	491	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						TGTGACATGGGGGTTGGCCATC	0.614													22	54					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57732829	57732829	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57732829G>A	uc002emi.2	+	3	360	c.271G>A	c.(271-273)GAG>AAG	p.E91K	CCDC135_uc002emj.2_Missense_Mutation_p.E91K|CCDC135_uc002emk.2_Missense_Mutation_p.E91K	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	91						cytoplasm				central_nervous_system(1)	1						CACACCCAAGGAGGAACACCT	0.572													51	166					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57734081	57734081	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57734081C>T	uc002emi.2	+	4	492	c.403C>T	c.(403-405)CCC>TCC	p.P135S	CCDC135_uc002emj.2_Missense_Mutation_p.P135S|CCDC135_uc002emk.2_Missense_Mutation_p.P135S	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	135						cytoplasm				central_nervous_system(1)	1						AACCCTCCGGCCCACACTGAT	0.572													69	151					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57757027	57757027	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57757027C>T	uc002emi.2	+	11	1611	c.1522C>T	c.(1522-1524)CCC>TCC	p.P508S	CCDC135_uc002emj.2_Missense_Mutation_p.P508S|CCDC135_uc002emk.2_Missense_Mutation_p.P443S	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	508						cytoplasm				central_nervous_system(1)	1						GCCTGGCCACCCCCAGGCTCT	0.597													24	111					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57761270	57761270	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57761270C>T	uc002emi.2	+	15	2234	c.2145C>T	c.(2143-2145)TCC>TCT	p.S715S	CCDC135_uc002emj.2_Silent_p.S715S|CCDC135_uc002emk.2_Silent_p.S650S	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	715						cytoplasm				central_nervous_system(1)	1						TGACCATCTCCATCTATGACA	0.557													46	93					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57762304	57762304	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57762304G>A	uc002emi.2	+	16	2288	c.2199G>A	c.(2197-2199)GAG>GAA	p.E733E	CCDC135_uc002emj.2_Silent_p.E733E|CCDC135_uc002emk.2_Silent_p.E668E	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	733						cytoplasm				central_nervous_system(1)	1						CTTTACAGGAGCGCATGATGC	0.587													54	124					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	57938654	57938654	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57938654G>A	uc002emt.2	-	26	2683	c.2618C>T	c.(2617-2619)TCT>TTT	p.S873F	CNGB1_uc010cdh.2_Missense_Mutation_p.S867F	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	873	Helical; Name=H5; (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GATCATCACAGAGAAAGCAAA	0.572													17	150					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	57945727	57945727	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57945727G>A	uc002emt.2	-	25	2487	c.2422C>T	c.(2422-2424)CTT>TTT	p.L808F	CNGB1_uc010cdh.2_Missense_Mutation_p.L802F	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	808	Helical; Name=H4; (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						CAGTAATAAAGACAGGAATTC	0.582													15	43					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	57950064	57950064	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:57950064C>T	uc002emt.2	-	22	2251	c.2186G>A	c.(2185-2187)CGA>CAA	p.R729Q	CNGB1_uc010cdh.2_Missense_Mutation_p.R723Q	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	729	Cytoplasmic (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GTAGTTATTTCGCATGTCCTT	0.517													41	93					0	0	1	0	0
C16orf57	79650	broad.mit.edu	37	16	58044008	58044008	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58044008C>T	uc002emz.2	+	3	524	c.441C>T	c.(439-441)TCC>TCT	p.S147S	C16orf57_uc010via.1_Silent_p.S147S|C16orf57_uc002emy.2_RNA|C16orf57_uc010vib.1_Silent_p.S147S|C16orf57_uc010vic.1_Silent_p.S96S	NM_024598	NP_078874	Q9BQ65	CP057_HUMAN	hypothetical protein LOC79650	147											0						GTATGACCTCCTTCCACAGGT	0.597													6	48					0	0	1	0	0
MMP15	4324	broad.mit.edu	37	16	58074568	58074568	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58074568C>T	uc002ena.2	+	5	1849	c.876C>T	c.(874-876)CCC>CCT	p.P292P		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	292	Extracellular (Potential).				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						TCAAGCTGCCCGAGGACGATC	0.582													28	63					0	0	1	0	0
MMP15	4324	broad.mit.edu	37	16	58077194	58077194	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58077194C>T	uc002ena.2	+	8	2357	c.1384C>T	c.(1384-1386)CCC>TCC	p.P462S		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	462	Extracellular (Potential).|Hemopexin-like 2.				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						CCTGGGCATCCCCTATGACCG	0.632													3	9					0	0	1	0	0
MMP15	4324	broad.mit.edu	37	16	58078924	58078924	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58078924C>T	uc002ena.2	+	10	2557	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	528	Hemopexin-like 4.|Extracellular (Potential).				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						ACACCTACTTCTACAAGGGCA	0.587													13	34					0	0	1	0	0
CCDC113	29070	broad.mit.edu	37	16	58312481	58312481	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58312481C>T	uc002ene.2	+	8	1066	c.987C>T	c.(985-987)ATC>ATT	p.I329I	CCDC113_uc010vid.1_Silent_p.I275I	NM_014157	NP_054876	Q9H0I3	CC113_HUMAN	coiled-coil domain containing 113 isoform 1	329	Potential.					protein complex					0						GGGAGAAGATCTTAAATGCGG	0.572													19	45					0	0	1	0	0
PRSS54	221191	broad.mit.edu	37	16	58314292	58314292	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58314292C>T	uc002enf.2	-	7	1419	c.1024G>A	c.(1024-1026)GAA>AAA	p.E342K	PRSS54_uc002eng.2_Missense_Mutation_p.E342K|PRSS54_uc010vie.1_Missense_Mutation_p.E243K|CCDC113_uc002ene.2_3'UTR|CCDC113_uc010vid.1_3'UTR	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	342					proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CTGCCTGATTCCTTTACATCC	0.473													24	70					0	0	1	0	0
NDRG4	65009	broad.mit.edu	37	16	58538273	58538273	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58538273C>T	uc002eno.2	+	4	365	c.259C>T	c.(259-261)CCC>TCC	p.P87S	NDRG4_uc002enk.2_Missense_Mutation_p.P119S|NDRG4_uc002enm.2_Missense_Mutation_p.P139S|NDRG4_uc010vif.1_Missense_Mutation_p.P119S|NDRG4_uc010cdk.2_Missense_Mutation_p.P105S|NDRG4_uc010vig.1_Missense_Mutation_p.P117S|NDRG4_uc010vih.1_Missense_Mutation_p.P32S|NDRG4_uc010vii.1_Missense_Mutation_p.P105S|NDRG4_uc002enp.2_Missense_Mutation_p.P87S|NDRG4_uc002enq.1_5'Flank	NM_022910	NP_075061	Q9ULP0	NDRG4_HUMAN	NDRG family member 4 isoform 1	87					cell differentiation|cell growth|multicellular organismal development|response to stress	cytoplasm				skin(1)	1						GTACCAGTTCCCCTCCATGGA	0.677													66	164					0	0	1	0	0
CNOT1	23019	broad.mit.edu	37	16	58583660	58583660	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58583660T>G	uc002env.2	-	25	3778	c.3485A>C	c.(3484-3486)AAC>ACC	p.N1162T	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.N1157T|CNOT1_uc002enx.2_Missense_Mutation_p.N1162T|CNOT1_uc002enz.1_Missense_Mutation_p.N591T|CNOT1_uc010vik.1_Missense_Mutation_p.N158T|SNORA46_uc002eny.1_5'Flank	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1162					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		AACCATCTTGTTAAATTCAGG	0.328													39	108					0	0	1	0	0
SLC38A7	55238	broad.mit.edu	37	16	58713945	58713945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58713945G>A	uc002eod.1	-	3	479	c.86C>T	c.(85-87)CCC>CTC	p.P29L	SLC38A7_uc002eob.1_RNA|SLC38A7_uc002eoc.1_Missense_Mutation_p.P29L|SLC38A7_uc010vil.1_Intron|SLC38A7_uc002eoe.1_Missense_Mutation_p.P29L	NM_018231	NP_060701	Q9NVC3	S38A7_HUMAN	solute carrier family 38, member 7	29					amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						GTCCACACAGGGACTCTGCAG	0.622													4	20					0	0	1	0	0
GOT2	2806	broad.mit.edu	37	16	58750625	58750625	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58750625G>A	uc002eof.1	-	7	909	c.795C>T	c.(793-795)ATC>ATT	p.I265I	GOT2_uc010vim.1_Silent_p.I222I	NM_002080	NP_002071	P00505	AATM_HUMAN	aspartate aminotransferase 2 precursor	265					aspartate catabolic process|fatty acid transport|gluconeogenesis|response to ethanol	mitochondrial matrix|plasma membrane	L-aspartate:2-oxoglutarate aminotransferase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TGCCCTGTTCGATGAAGTGGC	0.488													11	39					0	0	1	0	0
GOT2	2806	broad.mit.edu	37	16	58757655	58757655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:58757655G>A	uc002eof.1	-	2	355	c.241C>T	c.(241-243)CGC>TGC	p.R81C	GOT2_uc010vim.1_Missense_Mutation_p.R81C	NM_002080	NP_002071	P00505	AATM_HUMAN	aspartate aminotransferase 2 precursor	81					aspartate catabolic process|fatty acid transport|gluconeogenesis|response to ethanol	mitochondrial matrix|plasma membrane	L-aspartate:2-oxoglutarate aminotransferase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CTCACCTTGCGGACGCTAGGC	0.373													20	204					0	0	1	0	0
CDH8	1006	broad.mit.edu	37	16	61687892	61687892	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:61687892C>T	uc002eog.1	-	12	2272	c.2020G>A	c.(2020-2022)GAG>AAG	p.E674K		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	674	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GTGTCCTCCTCCCCTCCTCCT	0.383													61	134					0	0	1	0	0
CDH8	1006	broad.mit.edu	37	16	61747817	61747817	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:61747817C>T	uc002eog.1	-	10	1834	c.1582G>A	c.(1582-1584)GGA>AGA	p.G528R		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	528	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		AAATAATGTCCGTTTTTGGGA	0.378													44	35					0	0	1	0	0
CDH8	1006	broad.mit.edu	37	16	61761051	61761051	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:61761051C>T	uc002eog.1	-	9	1735	c.1483G>A	c.(1483-1485)GAA>AAA	p.E495K	CDH8_uc002eoh.2_Missense_Mutation_p.E264K	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	495	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GATGCGAATTCAGGGGCGTTG	0.393													60	137					0	0	1	0	0
CDH11	1009	broad.mit.edu	37	16	64981565	64981565	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:64981565G>A	uc002eoi.2	-	13	2766	c.2332C>T	c.(2332-2334)CGT>TGT	p.R778C	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_3'UTR|CDH11_uc010vin.1_Missense_Mutation_p.R652C	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	778	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TTCTTAAAACGAGGTCCCCAG	0.458			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			18	140					0	0	1	0	0
CDH11	1009	broad.mit.edu	37	16	64981737	64981737	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:64981737G>A	uc002eoi.2	-	13	2594	c.2160C>T	c.(2158-2160)TTC>TTT	p.F720F	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_3'UTR|CDH11_uc010vin.1_Silent_p.F594F	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	720	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TCGTGTTGATGAAGTCATCGA	0.532			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			34	78					0	0	1	0	0
CDH11	1009	broad.mit.edu	37	16	64984868	64984868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:64984868C>T	uc002eoi.2	-	12	2130	c.1696G>A	c.(1696-1698)GAC>AAC	p.D566N	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.D566N|CDH11_uc010vin.1_Missense_Mutation_p.D440N	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	566	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		AGGTACAAGTCCTGCTTCTGC	0.602			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			8	38					0	0	1	0	0
CDH11	1009	broad.mit.edu	37	16	65016033	65016033	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:65016033C>T	uc002eoi.2	-	8	1605	c.1171G>A	c.(1171-1173)GAA>AAA	p.E391K	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Missense_Mutation_p.E391K|CDH11_uc010vin.1_Missense_Mutation_p.E265K|CDH11_uc002eok.1_RNA	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	391	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TCTTGGACTTCGTGGATGTAA	0.502			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			17	105					0	0	1	0	0
CDH11	1009	broad.mit.edu	37	16	65016088	65016088	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:65016088G>A	uc002eoi.2	-	8	1550	c.1116C>T	c.(1114-1116)ATC>ATT	p.I372I	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Silent_p.I372I|CDH11_uc010vin.1_Silent_p.I246I|CDH11_uc002eok.1_RNA	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	372	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		CTTCTACTGAGATCTTGACGG	0.517			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			25	94					0	0	1	0	0
LOC283867	283867	broad.mit.edu	37	16	65345360	65345360	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:65345360G>A	uc010cdo.1	-	5		c.436C>T			LOC283867_uc010cdp.1_Intron|LOC283867_uc002eol.1_RNA					Homo sapiens cDNA clone IMAGE:5276218.												0				OV - Ovarian serous cystadenocarcinoma(108;0.17)		ATGCCTTCACGAATGTATGCC	0.468													39	113					0	0	1	0	0
CDH5	1003	broad.mit.edu	37	16	66423280	66423280	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66423280G>A	uc002eom.3	+	5	792	c.636G>A	c.(634-636)ACG>ACA	p.T212T	CDH5_uc002eon.1_Silent_p.T212T	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	212	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		TCACAATAACGAAAAGCTTGG	0.443													26	65					0	0	1	0	0
CDH5	1003	broad.mit.edu	37	16	66426077	66426077	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66426077C>T	uc002eom.3	+	7	1164	c.1008C>T	c.(1006-1008)ATC>ATT	p.I336I	CDH5_uc002eon.1_Silent_p.I336I	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	336	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		ACAGCTTCATCGTCGAGGCCA	0.428													52	186					0	0	1	0	0
CDH5	1003	broad.mit.edu	37	16	66434820	66434820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66434820G>A	uc002eom.3	+	11	1894	c.1738G>A	c.(1738-1740)GAG>AAG	p.E580K		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	580	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		CAAGTGCAACGAGCAGGGCGA	0.602													17	69					0	0	1	0	0
CDH5	1003	broad.mit.edu	37	16	66436970	66436970	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66436970C>T	uc002eom.3	+	12	2409	c.2253C>T	c.(2251-2253)TCC>TCT	p.S751S		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	751	Cytoplasmic (Potential).|Ser-rich.				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		CCGACTCATCCGACTCTGACG	0.622													9	26					0	0	1	0	0
CKLF	51192	broad.mit.edu	37	16	66599833	66599833	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66599833C>T	uc002eow.2	+	4	525	c.378C>T	c.(376-378)GCC>GCT	p.A126A	CKLF_uc002eox.1_Intron|CKLF_uc002eot.2_Silent_p.A94A|CKLF_uc002eou.2_Silent_p.A73A|CKLF_uc002eov.2_Silent_p.A41A|CMTM1_uc002epb.3_5'Flank|CMTM1_uc002epc.3_5'Flank|CMTM1_uc002epd.3_5'Flank|CMTM1_uc002epe.3_5'Flank|CMTM1_uc002epf.3_5'Flank|CMTM1_uc002epg.3_5'Flank|CMTM1_uc002eph.3_5'Flank|CMTM1_uc002epi.3_5'Flank|CMTM1_uc002epl.3_5'Flank|CMTM1_uc002epj.3_5'Flank|CMTM1_uc002epk.3_5'Flank|CMTM1_uc002epa.3_5'Flank|CMTM1_uc002epn.3_5'Flank|CMTM1_uc002epo.3_5'Flank|CMTM1_uc002epp.3_5'Flank|CMTM1_uc002epq.3_5'Flank|CMTM1_uc010cds.2_5'Flank|CMTM1_uc002epr.3_5'Flank|CMTM1_uc002epm.3_5'Flank|CMTM1_uc010cdt.1_5'Flank	NM_016951	NP_058647	Q9UBR5	CKLF_HUMAN	chemokine-like factor isoform a	126	Helical; (Potential).|MARVEL.				cell proliferation|lymphocyte chemotaxis|macrophage chemotaxis|neutrophil chemotaxis|secretion by cell	extracellular space|integral to membrane	chemokine activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0689)|Epithelial(162;0.217)		CCGACGGGGCCCTTATTTACC	0.438													28	114					0	0	1	0	0
PDP2	57546	broad.mit.edu	37	16	66919186	66919186	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66919186C>T	uc002eqk.1	+	2	1161	c.999C>T	c.(997-999)ATC>ATT	p.I333I		NM_020786	NP_065837	Q9P2J9	PDP2_HUMAN	pyruvate dehydrogenase phosphatase isoenzyme 2	333					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity|metal ion binding			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		GGACGATCATCATGGAGGACA	0.587													6	47					0	0	1	0	0
CDH16	1014	broad.mit.edu	37	16	66944318	66944318	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66944318G>A	uc002eql.2	-	15	2085	c.2012C>T	c.(2011-2013)CCC>CTC	p.P671L	CDH16_uc010cdy.2_Missense_Mutation_p.P649L|CDH16_uc002eqm.2_Missense_Mutation_p.P574L	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	671	Extracellular (Potential).|Ectodomain G.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GTATTGGGAGGGCACAGGGGC	0.632													28	81					0	0	1	0	0
CDH16	1014	broad.mit.edu	37	16	66947101	66947101	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66947101C>T	uc002eql.2	-	9	1060	c.987G>A	c.(985-987)GAG>GAA	p.E329E	CDH16_uc010cdy.2_Silent_p.E329E|CDH16_uc002eqm.2_Silent_p.E232E	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	329	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		CGTTGTCATTCTCATCCATCA	0.612													14	136					0	0	1	0	0
CES2	8824	broad.mit.edu	37	16	66975410	66975410	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66975410C>T	uc002eqr.2	+	7	2109	c.1109C>T	c.(1108-1110)CCT>CTT	p.P370L	CES2_uc002eqq.2_Missense_Mutation_p.P370L|CES2_uc002eqs.2_Missense_Mutation_p.P213L	NM_003869	NP_003860	O00748	EST2_HUMAN	carboxylesterase 2 isoform 1	306					catabolic process	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0663)|Epithelial(162;0.166)		TCCCCTCAGCCTTTCAAGATG	0.572													22	49					0	0	1	0	0
CES3	23491	broad.mit.edu	37	16	66998585	66998585	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:66998585C>T	uc002eqt.2	+	6	847	c.774C>T	c.(772-774)ATC>ATT	p.I258I	CES3_uc010cdz.2_Silent_p.I258I|CES3_uc010cea.2_RNA|CES3_uc010viw.1_5'Flank	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	258						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		GTGGGGTCATCACCACCCCAG	0.587													28	96					0	0	1	0	0
EXOC3L	283849	broad.mit.edu	37	16	67221470	67221470	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67221470C>T	uc002erx.1	-	5	939	c.698G>A	c.(697-699)CGA>CAA	p.R233Q	EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_Intron|EXOC3L_uc002ery.1_Missense_Mutation_p.R177Q|EXOC3L_uc010vje.1_Missense_Mutation_p.R172Q	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	233	Mediates interaction with EXOC2, EXOC4 and EXOC5 (By similarity).				exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		GGGGGTTGTTCGTCCAGTCTC	0.687													10	53					0	0	1	0	0
EXOC3L	283849	broad.mit.edu	37	16	67223019	67223019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67223019G>A	uc002erx.1	-	3	352	c.111C>T	c.(109-111)GCC>GCT	p.A37A	EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_5'UTR|EXOC3L_uc002ery.1_Silent_p.A42A|EXOC3L_uc010vje.1_Silent_p.A37A	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	37	Mediates interaction with EXOC2, EXOC4 and EXOC5 (By similarity).				exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		AGATGCCTGAGGCCCACTTGA	0.682													5	14					0	0	1	0	0
EXOC3L	283849	broad.mit.edu	37	16	67223077	67223077	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67223077T>C	uc002erx.1	-	3	294	c.53A>G	c.(52-54)GAG>GGG	p.E18G	EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_5'UTR|EXOC3L_uc002ery.1_Missense_Mutation_p.E23G|EXOC3L_uc010vje.1_Missense_Mutation_p.E18G|E2F4_uc002erz.2_5'Flank	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	18	Mediates interaction with EXOC2, EXOC4 and EXOC5 (By similarity).				exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		CTCTGGCCACTCAGGTCCTGG	0.597													8	8					0	0	1	0	0
SLC9A5	6553	broad.mit.edu	37	16	67290926	67290926	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67290926C>T	uc002esm.2	+	7	1308	c.1245C>T	c.(1243-1245)CTC>CTT	p.L415L	SLC9A5_uc010cee.2_Silent_p.L120L|SLC9A5_uc010vji.1_5'UTR	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	415	Helical; (Potential).				regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		CCTTTGCTCTCGTCATCCTAC	0.557													54	113					0	0	1	0	0
SLC9A5	6553	broad.mit.edu	37	16	67304727	67304727	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67304727G>A	uc002esm.2	+	16	2368	c.2305G>A	c.(2305-2307)GGG>AGG	p.G769R	SLC9A5_uc010cee.2_Missense_Mutation_p.G474R|SLC9A5_uc010vji.1_Missense_Mutation_p.G273R	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	769					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		GAGTGGGCAGGGGGACCTGGC	0.597													16	50					0	0	1	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67314090	67314090	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67314090C>T	uc002eso.3	+	1	2678	c.143C>T	c.(142-144)CCT>CTT	p.P48L	PLEKHG4_uc002esp.3_5'UTR|PLEKHG4_uc002esq.3_Missense_Mutation_p.P48L|PLEKHG4_uc002esr.1_Intron|PLEKHG4_uc010cef.2_Missense_Mutation_p.P48L|PLEKHG4_uc002ess.3_Missense_Mutation_p.P48L|PLEKHG4_uc010ceg.2_Missense_Mutation_p.P48L	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	48					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		GACCCAGGTCCTCCAAGACCA	0.602													8	61					0	0	1	0	0
KCTD19	146212	broad.mit.edu	37	16	67333348	67333348	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67333348G>A	uc002esu.2	-	6	955	c.904C>T	c.(904-906)CTG>TTG	p.L302L	KCTD19_uc002est.2_Silent_p.L74L|KCTD19_uc010vjj.1_Silent_p.L45L	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	302						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		AGCTGGCCCAGCGCAGAGTCC	0.627													31	78					0	0	1	0	0
KCTD19	146212	broad.mit.edu	37	16	67354558	67354558	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67354558G>A	uc002esu.2	-	2	285	c.234C>T	c.(232-234)TCC>TCT	p.S78S	KCTD19_uc002est.2_5'UTR|KCTD19_uc010vjj.1_5'UTR	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	78						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		CTGCACAACTGGAGAAGGAGA	0.478													9	101					0	0	1	0	0
LRRC36	55282	broad.mit.edu	37	16	67380159	67380160	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67380159_67380160GG>AA	uc002esv.2	+	3	218_219	c.199_200GG>AA	c.(199-201)GGA>AAA	p.G67K	LRRC36_uc002esw.2_RNA|LRRC36_uc010ceh.2_5'Flank|LRRC36_uc002esx.2_5'Flank|LRRC36_uc010vjk.1_5'Flank|LRRC36_uc010vjl.1_5'Flank|LRRC36_uc002esy.2_5'Flank	NM_018296	NP_060766	Q1X8D7	LRC36_HUMAN	leucine rich repeat containing 36 isoform 1	67	LRR 1.										0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0669)|Epithelial(162;0.161)		TTCCTTGTAGGGAATCCAGTAT	0.361													23	74					0	0	1	0	0
TPPP3	51673	broad.mit.edu	37	16	67424131	67424131	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67424131G>A	uc002esz.2	-	3	1312	c.477C>T	c.(475-477)GGC>GGT	p.G159G	TPPP3_uc002eta.2_Silent_p.G159G|TPPP3_uc002etb.2_Silent_p.G159G	NM_016140	NP_057224	Q9BW30	TPPP3_HUMAN	tubulin polymerization-promoting protein family	159					microtubule bundle formation	cytoplasm|microtubule	calcium ion binding|tubulin binding			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0336)|Epithelial(162;0.0781)		CGCTCACGTAGCCACTGTCGT	0.627													15	73					0	0	1	0	0
ZDHHC1	29800	broad.mit.edu	37	16	67429105	67429105	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67429105G>A	uc010vjm.1	-	10	1334	c.1030C>T	c.(1030-1032)CCG>TCG	p.P344S	TPPP3_uc002eta.2_5'Flank|TPPP3_uc002etb.2_5'Flank	NM_013304	NP_037436	Q8WTX9	ZDHC1_HUMAN	zinc finger, DHHC-type containing 1	344						integral to membrane	DNA binding|zinc ion binding				0		Ovarian(137;0.223)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0178)|all cancers(182;5.71e-53)|Epithelial(162;4.73e-52)|OV - Ovarian serous cystadenocarcinoma(108;1.53e-29)|Kidney(780;4.37e-05)|BRCA - Breast invasive adenocarcinoma(181;5.8e-05)|GBM - Glioblastoma multiforme(240;0.0022)		GTCGGATCCGGGGAGGCAGGG	0.637													10	13					0	0	1	0	0
ZDHHC1	29800	broad.mit.edu	37	16	67440214	67440214	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67440214G>A	uc010vjm.1	-	3	445	c.141C>T	c.(139-141)CCC>CCT	p.P47P		NM_013304	NP_037436	Q8WTX9	ZDHC1_HUMAN	zinc finger, DHHC-type containing 1	47						integral to membrane	DNA binding|zinc ion binding				0		Ovarian(137;0.223)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0178)|all cancers(182;5.71e-53)|Epithelial(162;4.73e-52)|OV - Ovarian serous cystadenocarcinoma(108;1.53e-29)|Kidney(780;4.37e-05)|BRCA - Breast invasive adenocarcinoma(181;5.8e-05)|GBM - Glioblastoma multiforme(240;0.0022)		GCGGGTGAGGGGGCCAGCTCC	0.667													5	12					0	0	1	0	0
FAM65A	79567	broad.mit.edu	37	16	67577114	67577114	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67577114C>T	uc010vjp.1	+	13	2581	c.2485C>T	c.(2485-2487)CCT>TCT	p.P829S	FAM65A_uc010cei.1_Missense_Mutation_p.P651S|FAM65A_uc002eth.2_Missense_Mutation_p.P809S|FAM65A_uc010cej.2_Missense_Mutation_p.P812S|FAM65A_uc002eti.1_Missense_Mutation_p.P772S|FAM65A_uc010vjq.1_Missense_Mutation_p.P823S|FAM65A_uc002etj.1_Missense_Mutation_p.P808S|FAM65A_uc002etk.2_Missense_Mutation_p.P808S	NM_024519	NP_078795	Q6ZS17	FA65A_HUMAN	hypothetical protein LOC79567	813						cytoplasm	binding			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		TGGCCAGTTTCCTGAGCTGCA	0.672													8	9					0	0	1	0	0
RLTPR	146206	broad.mit.edu	37	16	67680152	67680152	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67680152G>A	uc002etn.2	+	5	433	c.313G>A	c.(313-315)GAA>AAA	p.E105K	RLTPR_uc010cel.1_Missense_Mutation_p.E105K|RLTPR_uc010vjr.1_Missense_Mutation_p.E105K	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	105	LRR 2.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		GGCCGCCCTGGAACAGCTGGC	0.637													15	22					0	0	1	0	0
RLTPR	146206	broad.mit.edu	37	16	67681486	67681486	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67681486G>A	uc002etn.2	+	11	972	c.852G>A	c.(850-852)GGG>GGA	p.G284G	RLTPR_uc010cel.1_Silent_p.G284G|RLTPR_uc010vjr.1_Silent_p.G284G	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	284	LRR 4.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		GCCTCGCGGGGAACCTGCTGG	0.672													8	5					0	0	1	0	0
RLTPR	146206	broad.mit.edu	37	16	67685211	67685211	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67685211C>T	uc002etn.2	+	23	2426	c.2306C>T	c.(2305-2307)TCT>TTT	p.S769F	RLTPR_uc010cel.1_Missense_Mutation_p.S762F|RLTPR_uc010vjr.1_Missense_Mutation_p.S733F|RLTPR_uc010vjs.1_5'Flank	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	769										breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		GCCAACTTCTCTCTCAGCGTG	0.612													26	62					0	0	1	0	0
RLTPR	146206	broad.mit.edu	37	16	67686146	67686146	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67686146C>T	uc002etn.2	+	27	2841	c.2721C>T	c.(2719-2721)GCC>GCT	p.A907A	RLTPR_uc010cel.1_Silent_p.A900A|RLTPR_uc010vjr.1_Silent_p.A871A|RLTPR_uc010vjs.1_5'Flank	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	907	Pro-rich.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		TGCCCCCTGCCCTACCAGCAC	0.498													23	113					0	0	1	0	0
ACD	65057	broad.mit.edu	37	16	67694195	67694195	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67694195G>A	uc002etq.3	-	1	524	c.187C>T	c.(187-189)CCG>TCG	p.P63S	ACD_uc002etp.3_Missense_Mutation_p.P63S|ACD_uc002etr.3_Missense_Mutation_p.P63S|ACD_uc010vjt.1_Missense_Mutation_p.P53S|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	63					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CCTTTCCTCGGAAGAGGAAGC	0.741													5	35					0	0	1	0	0
ACD	65057	broad.mit.edu	37	16	67694215	67694215	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67694215G>A	uc002etq.3	-	1	504	c.167C>T	c.(166-168)CCA>CTA	p.P56L	ACD_uc002etp.3_Missense_Mutation_p.P56L|ACD_uc002etr.3_Missense_Mutation_p.P56L|ACD_uc010vjt.1_Missense_Mutation_p.P46L|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	56					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CTCCTTCGCTGGGCGGGGCCG	0.741													5	32					0	0	1	0	0
GFOD2	81577	broad.mit.edu	37	16	67709604	67709604	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67709604G>A	uc002eub.2	-	3	907	c.612C>T	c.(610-612)TTC>TTT	p.F204F	GFOD2_uc002eua.1_RNA|GFOD2_uc002euc.2_Silent_p.F99F	NM_030819	NP_110446	Q3B7J2	GFOD2_HUMAN	glucose-fructose oxidoreductase domain	204						proteinaceous extracellular matrix	binding|oxidoreductase activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0151)|Epithelial(162;0.0505)|all cancers(182;0.242)		TCTGCCTCACGAATGTCTTGA	0.612													7	72					0	0	1	0	0
RANBP10	57610	broad.mit.edu	37	16	67763633	67763634	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67763633_67763634GG>AA	uc002eud.2	-	9	1212_1213	c.1096_1097CC>TT	c.(1096-1098)CCC>TTC	p.P366F	RANBP10_uc010ceo.2_Missense_Mutation_p.P137F|RANBP10_uc010vju.1_Missense_Mutation_p.P310F|RANBP10_uc010vjv.1_Missense_Mutation_p.P249F|RANBP10_uc010vjw.1_Missense_Mutation_p.P27F	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	366	Ser-rich.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		ACTGAGGCTGGGGGAGCCAGGG	0.609													22	71					0	0	1	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67854817	67854817	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67854817C>T	uc002euj.2	+	3	455	c.61C>T	c.(61-63)CGA>TGA	p.R21*	TSNAXIP1_uc010cep.2_5'UTR|TSNAXIP1_uc010vjz.1_Intron|TSNAXIP1_uc002euf.3_Intron|TSNAXIP1_uc010vka.1_Nonsense_Mutation_p.R75*|TSNAXIP1_uc010vkb.1_Intron|TSNAXIP1_uc002eug.3_Intron|TSNAXIP1_uc002euh.3_Intron|TSNAXIP1_uc002eui.3_Intron|TSNAXIP1_uc002euk.2_5'Flank	NM_018430	NP_060900	Q2TAA8	TXIP1_HUMAN	translin-associated factor X interacting protein	21					cell differentiation|multicellular organismal development|spermatogenesis	perinuclear region of cytoplasm					0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00432)|Epithelial(162;0.0192)|all cancers(182;0.125)		TTTGCAAAATCGAAAACCCTG	0.582													74	229					0	0	1	0	0
EDC4	23644	broad.mit.edu	37	16	67912442	67912443	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67912442_67912443CC>TT	uc002eur.2	+	10	1258_1259	c.1092_1093CC>TT	c.(1090-1095)GTCCCT>GTTTCT	p.P365S	EDC4_uc010cer.2_5'UTR|EDC4_uc010vkg.1_Missense_Mutation_p.P297S|EDC4_uc010ces.1_Missense_Mutation_p.P208S|EDC4_uc002eus.2_Missense_Mutation_p.P95S	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	365	WD 4.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		CTTGCAGTGTCCCTTTCTGGAG	0.564													34	83					0	0	1	0	0
EDC4	23644	broad.mit.edu	37	16	67915583	67915583	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67915583C>T	uc002eur.2	+	22	3005	c.2839C>T	c.(2839-2841)CCT>TCT	p.P947S	EDC4_uc010cer.2_Missense_Mutation_p.P566S|EDC4_uc002eus.2_Missense_Mutation_p.P677S|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	947					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		GGCAGAGCCCCCTGAGGACTG	0.607													14	40					0	0	1	0	0
NRN1L	123904	broad.mit.edu	37	16	67920138	67920138	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67920138C>T	uc002euu.2	+	3	500	c.474C>T	c.(472-474)GCC>GCT	p.A158A	EDC4_uc002eut.1_3'UTR	NM_198443	NP_940845	Q496H8	NRN1L_HUMAN	neuritin 1-like precursor	158						anchored to membrane|plasma membrane				central_nervous_system(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00415)|Epithelial(162;0.0182)|all cancers(182;0.119)		TGGCTCTGGCCTACCTCCTGA	0.682													5	16					0	0	1	0	0
PSKH1	5681	broad.mit.edu	37	16	67942812	67942812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67942812G>A	uc002euv.2	+	2	330	c.160G>A	c.(160-162)GCA>ACA	p.A54T	PSKH1_uc010cet.2_Missense_Mutation_p.A54T	NM_006742	NP_006733	P11801	KPSH1_HUMAN	protein serine kinase H1	54						endoplasmic reticulum membrane|Golgi apparatus|microtubule organizing center|nuclear speck|plasma membrane	ATP binding|protein serine/threonine kinase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0044)|Epithelial(162;0.0197)|all cancers(182;0.128)		CGGGTTCCCAGCAGCAAGTCA	0.602													10	31					0	0	1	0	0
SLC12A4	6560	broad.mit.edu	37	16	67997414	67997414	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:67997414G>A	uc002euz.2	-	2	305	c.164C>T	c.(163-165)GCT>GTT	p.A55V	SLC12A4_uc010ceu.2_Missense_Mutation_p.A49V|SLC12A4_uc010vkh.1_Missense_Mutation_p.A24V|SLC12A4_uc010vki.1_Missense_Mutation_p.A55V|SLC12A4_uc010vkj.1_Intron|SLC12A4_uc002eva.2_Missense_Mutation_p.A55V|SLC12A4_uc002evb.2_RNA|SLC12A4_uc010cew.1_5'UTR	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	55	Cytoplasmic (Potential).				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	TCCTCTGGAAGCCTCCAAGGG	0.547													5	74					0	0	1	0	0
DPEP3	64180	broad.mit.edu	37	16	68011711	68011711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68011711G>A	uc002evc.3	-	6	947	c.853C>T	c.(853-855)CGC>TGC	p.R285C	DPEP3_uc010cex.2_Missense_Mutation_p.R285C	NM_022357	NP_071752	Q9H4B8	DPEP3_HUMAN	dipeptidase 3 isoform a	260					meiosis	anchored to membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			breast(3)	3		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0117)|Epithelial(162;0.0481)|all cancers(182;0.236)		ATGCCCAGGCGGTTCAACTCC	0.498													18	23					0	0	1	0	0
DPEP2	64174	broad.mit.edu	37	16	68021426	68021426	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68021426G>A	uc010cey.2	-	10	1608	c.1444C>T	c.(1444-1446)CTT>TTT	p.L482F	DPEP2_uc002evd.3_Missense_Mutation_p.L487F|DPEP2_uc002eve.2_Missense_Mutation_p.L482F|DPEP2_uc002evf.2_RNA	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	482					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		CACAGAATAAGGACTGGGAAG	0.542													20	174					0	0	1	0	0
DPEP2	64174	broad.mit.edu	37	16	68021793	68021793	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68021793G>A	uc010cey.2	-	9	1332	c.1168C>T	c.(1168-1170)CGT>TGT	p.R390C	DPEP2_uc002evd.3_Missense_Mutation_p.R395C|DPEP2_uc002eve.2_Missense_Mutation_p.R390C|DPEP2_uc002evf.2_RNA	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	390					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		AGGTTTCCACGAAGGACACCC	0.562													31	179					0	0	1	0	0
DUS2L	54920	broad.mit.edu	37	16	68110572	68110572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68110572C>T	uc002evi.2	+	15	1269	c.1120C>T	c.(1120-1122)CTA>TTA	p.L374L	DUS2L_uc002evj.2_Silent_p.L374L|DUS2L_uc010vkk.1_Silent_p.L339L|DUS2L_uc010cez.2_Silent_p.L287L	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	374	DRBM.				tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		TAAGATGTGCCTACTAGAGTG	0.607													21	88					0	0	1	0	0
NFATC3	4775	broad.mit.edu	37	16	68156997	68156997	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68156997C>T	uc002evo.1	+	2	1421	c.1211C>T	c.(1210-1212)CCA>CTA	p.P404L	NFATC3_uc010vkl.1_5'UTR|NFATC3_uc010vkm.1_5'UTR|NFATC3_uc010vkn.1_5'UTR|NFATC3_uc010vko.1_5'UTR|NFATC3_uc010vkp.1_5'UTR|NFATC3_uc010vkq.1_5'UTR|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Missense_Mutation_p.P404L|NFATC3_uc002evm.1_Missense_Mutation_p.P404L|NFATC3_uc002evn.1_Missense_Mutation_p.P404L|NFATC3_uc010vkr.1_5'UTR|NFATC3_uc010vks.1_5'UTR|NFATC3_uc010vkt.1_5'UTR|NFATC3_uc010vku.1_5'UTR|NFATC3_uc010vkv.1_5'UTR|NFATC3_uc010vkw.1_5'UTR|NFATC3_uc010vkx.1_5'UTR|NFATC3_uc010vky.1_5'UTR|NFATC3_uc010vkz.1_5'UTR|NFATC3_uc010vla.1_5'UTR|NFATC3_uc010vlb.1_5'UTR|NFATC3_uc010vlc.1_5'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	404					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		TGGAGCAAACCAAAGCCTGGC	0.413													28	124					0	0	1	0	0
NFATC3	4775	broad.mit.edu	37	16	68160436	68160436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68160436C>T	uc002evo.1	+	3	1534	c.1324C>T	c.(1324-1326)CAT>TAT	p.H442Y	NFATC3_uc010vkl.1_5'UTR|NFATC3_uc010vkm.1_5'UTR|NFATC3_uc010vkn.1_5'UTR|NFATC3_uc010vko.1_5'UTR|NFATC3_uc010vkp.1_5'UTR|NFATC3_uc010vkq.1_5'UTR|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Missense_Mutation_p.H442Y|NFATC3_uc002evm.1_Missense_Mutation_p.H442Y|NFATC3_uc002evn.1_Missense_Mutation_p.H442Y|NFATC3_uc010vkr.1_5'UTR|NFATC3_uc010vks.1_5'UTR|NFATC3_uc010vkt.1_5'UTR|NFATC3_uc010vku.1_5'UTR|NFATC3_uc010vkv.1_5'UTR|NFATC3_uc010vkw.1_5'UTR|NFATC3_uc010vkx.1_5'UTR|NFATC3_uc010vky.1_5'UTR|NFATC3_uc010vkz.1_5'UTR|NFATC3_uc010vla.1_5'UTR|NFATC3_uc010vlb.1_5'UTR|NFATC3_uc010vlc.1_5'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	442	RHD.				inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		ACCTAAAACTCATCATCGAGC	0.438													35	60					0	0	1	0	0
ESRP2	80004	broad.mit.edu	37	16	68266310	68266310	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68266310C>T	uc010cfa.1	-	8	1136	c.948G>A	c.(946-948)CAG>CAA	p.Q316Q	ESRP2_uc002evp.1_Intron|ESRP2_uc002evq.1_Silent_p.Q306Q	NM_024939	NP_079215	Q9H6T0	ESRP2_HUMAN	RNA binding motif protein 35B	316	RRM 1.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding|nucleotide binding			ovary(1)	1						GCTTGTGTCTCTGCAGCGCTA	0.637													15	65					0	0	1	0	0
SMPD3	55512	broad.mit.edu	37	16	68398989	68398989	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68398989C>T	uc002ewa.2	-	4	1752	c.1330G>A	c.(1330-1332)GTG>ATG	p.V444M	SMPD3_uc010cfe.2_Missense_Mutation_p.V444M|SMPD3_uc010vlh.1_Missense_Mutation_p.V444M	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	444	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	GTGCTTCCCACCTGCACCTGG	0.617													12	35					0	0	1	0	0
SMPD3	55512	broad.mit.edu	37	16	68405072	68405072	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68405072C>T	uc002ewa.2	-	3	1435	c.1013G>A	c.(1012-1014)AGG>AAG	p.R338K	SMPD3_uc010cfe.2_Missense_Mutation_p.R338K|SMPD3_uc010vlh.1_Missense_Mutation_p.R338K	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	338	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	GGGGTGCCGCCTCCTGCGTGC	0.662													16	31					0	0	1	0	0
SMPD3	55512	broad.mit.edu	37	16	68405281	68405281	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68405281C>T	uc002ewa.2	-	3	1226	c.804G>A	c.(802-804)AGG>AGA	p.R268R	SMPD3_uc010cfe.2_Silent_p.R268R|SMPD3_uc010vlh.1_Silent_p.R268R	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	268	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	CAGCTCCGTTCCTGGCCTGGC	0.716													14	22					0	0	1	0	0
SMPD3	55512	broad.mit.edu	37	16	68405287	68405287	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68405287C>T	uc002ewa.2	-	3	1220	c.798G>A	c.(796-798)CAG>CAA	p.Q266Q	SMPD3_uc010cfe.2_Silent_p.Q266Q|SMPD3_uc010vlh.1_Silent_p.Q266Q	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	266	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	CGTTCCTGGCCTGGCCCCCAG	0.716													4	30					0	0	1	0	0
ZFP90	146198	broad.mit.edu	37	16	68597661	68597661	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68597661C>T	uc010cff.2	+	5	1263	c.971C>T	c.(970-972)TCC>TTC	p.S324F	ZFP90_uc002ewb.2_Missense_Mutation_p.P130S|ZFP90_uc002ewc.2_Missense_Mutation_p.P130S|ZFP90_uc002ewd.2_Missense_Mutation_p.S324F|ZFP90_uc002ewe.2_Missense_Mutation_p.S324F	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	324	C2H2-type 4.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		CGCAGCTCCTCCCTTGTTCAA	0.502													23	52					0	0	1	0	0
ZFP90	146198	broad.mit.edu	37	16	68597784	68597784	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68597784C>T	uc010cff.2	+	5	1386	c.1094C>T	c.(1093-1095)CCC>CTC	p.P365L	ZFP90_uc002ewb.2_Missense_Mutation_p.P171S|ZFP90_uc002ewc.2_Missense_Mutation_p.P171S|ZFP90_uc002ewd.2_Missense_Mutation_p.P365L|ZFP90_uc002ewe.2_Missense_Mutation_p.P365L	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	365					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		GGAGAGAAGCCCTTCCAGTGT	0.473													13	46					0	0	1	0	0
ZFP90	146198	broad.mit.edu	37	16	68598372	68598372	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68598372C>T	uc010cff.2	+	5	1974	c.1682C>T	c.(1681-1683)GCC>GTC	p.A561V	ZFP90_uc002ewb.2_3'UTR|ZFP90_uc002ewc.2_3'UTR|ZFP90_uc002ewd.2_Missense_Mutation_p.A561V|ZFP90_uc002ewe.2_Missense_Mutation_p.A561V	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	561	C2H2-type 11.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		TGTGGGAAAGCCTTTAGTCAA	0.438													29	118					0	0	1	0	0
CDH3	1001	broad.mit.edu	37	16	68732150	68732150	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68732150G>T	uc002ewf.2	+	16	3469	c.2337G>T	c.(2335-2337)GTG>GTT	p.V779V	CDH3_uc010vli.1_Silent_p.V724V	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	779	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		CCCTCTTGGTGTTCGACTATG	0.622													37	92					2.05212e-20	2.06342e-20	1	1	0
CDH1	999	broad.mit.edu	37	16	68842665	68842665	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68842665C>T	uc002ewg.1	+	5	725	c.601C>T	c.(601-603)CCT>TCT	p.P201S	CDH1_uc010vlj.1_RNA|CDH1_uc010cfg.1_Missense_Mutation_p.P201S	NM_004360	NP_004351	P12830	CADH1_HUMAN	cadherin 1, type 1 preproprotein	201	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cellular component disassembly involved in apoptosis|cellular response to indole-3-methanol|cellular response to lithium ion|homophilic cell adhesion|negative regulation of cell-cell adhesion|positive regulation of transcription factor import into nucleus|positive regulation of transcription, DNA-dependent|regulation of immune response	actin cytoskeleton|aggresome|apical junction complex|catenin complex|cell-cell adherens junction|endosome|focal adhesion|Golgi apparatus|integral to membrane|internal side of plasma membrane|lateral plasma membrane|perinuclear region of cytoplasm	cell adhesion molecule binding|gamma-catenin binding	p.P201fs*14(1)		breast(148)|stomach(71)|biliary_tract(8)|endometrium(3)|soft_tissue(2)|large_intestine(2)|urinary_tract(2)|oesophagus(2)|ovary(2)|thyroid(1)|central_nervous_system(1)|lung(1)	243		all_neural(199;0.0189)|Ovarian(137;0.0563)		Epithelial(162;8.44e-05)|all cancers(182;0.000404)|OV - Ovarian serous cystadenocarcinoma(108;0.000426)|BRCA - Breast invasive adenocarcinoma(181;0.0261)		TGACACACCCCCTGTTGGTGT	0.413			Mis|N|F|S		lobular breast|gastric	gastric			Hereditary_Diffuse_Gastric_Cancer				16	49					0	0	1	0	0
TMCO7	79613	broad.mit.edu	37	16	68893950	68893950	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:68893950C>T	uc002ewi.3	+	2	270	c.258C>T	c.(256-258)AAC>AAT	p.N86N	TMCO7_uc002ewh.2_Silent_p.N86N	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	86						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		GGCCACAAAACTCTGTGGATG	0.433													24	75					0	0	1	0	0
HAS3	3038	broad.mit.edu	37	16	69143776	69143776	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:69143776G>A	uc010cfh.2	+	2	702	c.478G>A	c.(478-480)GAG>AAG	p.E160K	HAS3_uc002ewk.2_Missense_Mutation_p.E160K|HAS3_uc010vlk.1_Missense_Mutation_p.E160K|HAS3_uc002ewl.2_Missense_Mutation_p.E160K	NM_005329	NP_005320	O00219	HAS3_HUMAN	hyaluronan synthase 3 isoform a	160	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	hyaluronan synthase activity				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.0694)		TGAGGCAGGCGAGGGTGAGAC	0.647													13	60					0	0	1	0	0
CIRH1A	84916	broad.mit.edu	37	16	69184802	69184802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:69184802C>T	uc002ews.3	+	8	1093	c.997C>T	c.(997-999)CCC>TCC	p.P333S	CIRH1A_uc002ewr.2_Missense_Mutation_p.P333S|CIRH1A_uc002ewt.3_Missense_Mutation_p.P250S|CIRH1A_uc010cfi.2_Missense_Mutation_p.P250S|CIRH1A_uc010cfj.1_Missense_Mutation_p.P152S	NM_032830	NP_116219	Q969X6	CIR1A_HUMAN	cirhin	333	WD 8.					nucleolus	protein binding				0				OV - Ovarian serous cystadenocarcinoma(108;0.125)		AATCACCTTTCCCCACGTAAG	0.542													18	61					0	0	1	0	0
SNTB2	6645	broad.mit.edu	37	16	69317986	69317986	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:69317986C>T	uc002ewu.2	+	5	1204	c.1184C>T	c.(1183-1185)TCC>TTC	p.S395F		NM_006750	NP_006741	Q13425	SNTB2_HUMAN	basic beta 2 syntrophin	395	PH 2.					cell junction|dystrophin-associated glycoprotein complex|membrane fraction|microtubule|transport vesicle membrane	actin binding|calmodulin binding|protein binding				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.208)		CGATCCCCCTCCCTTGGATCT	0.483													28	123					0	0	1	0	0
NFAT5	10725	broad.mit.edu	37	16	69727233	69727233	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:69727233C>T	uc002exm.1	+	12	4659	c.3451C>T	c.(3451-3453)CAG>TAG	p.Q1151*	NFAT5_uc002exi.2_Nonsense_Mutation_p.Q1075*|NFAT5_uc002exj.1_Nonsense_Mutation_p.Q1075*|NFAT5_uc002exk.1_Nonsense_Mutation_p.Q1075*|NFAT5_uc002exl.1_Nonsense_Mutation_p.Q1169*|NFAT5_uc002exn.1_Nonsense_Mutation_p.Q1168*|NFAT5_uc002exo.1_RNA	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	1151					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GAATAATCTTCAGACTAACAC	0.428													68	152					0	0	1	0	0
WWP2	11060	broad.mit.edu	37	16	69959346	69959346	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:69959346C>T	uc002exu.1	+	12	1282	c.1193C>T	c.(1192-1194)TCG>TTG	p.S398L	WWP2_uc002exv.1_Missense_Mutation_p.S398L|WWP2_uc010vlm.1_Missense_Mutation_p.S282L|WWP2_uc010vln.1_Missense_Mutation_p.S16L|WWP2_uc002exw.1_5'UTR	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	398					entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						TCGAGTGCTTCGACTGACCAT	0.488													182	397					0	0	1	0	0
WWP2	11060	broad.mit.edu	37	16	69969797	69969797	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:69969797C>T	uc002exu.1	+	19	1973	c.1884C>T	c.(1882-1884)CTC>CTT	p.L628L	WWP2_uc002exv.1_Silent_p.L628L|WWP2_uc010vlm.1_Silent_p.L512L|WWP2_uc010vln.1_Silent_p.L246L|WWP2_uc002exw.1_Silent_p.L189L	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	628	HECT.				entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						GCTTCACCCTCCCTTTCTACA	0.532													55	164					0	0	1	0	0
PDPR	55066	broad.mit.edu	37	16	70190728	70190728	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70190728C>T	uc002eyf.1	+	19	3543	c.2586C>T	c.(2584-2586)TTC>TTT	p.F862F	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Silent_p.F762F|PDPR_uc002eyg.1_Silent_p.F529F|PDPR_uc002eyh.2_Silent_p.F207F|PDPR_uc010vls.1_Silent_p.F207F	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	862					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		CCTCCCTCTTCACCCAGAAGC	0.562													4	23					0	0	1	0	0
AARS	16	broad.mit.edu	37	16	70298899	70298899	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70298899G>A	uc002eyn.1	-	11	1564	c.1454C>T	c.(1453-1455)CCA>CTA	p.P485L	AARS_uc010vlu.1_Missense_Mutation_p.P315L	NM_001605	NP_001596	P49588	SYAC_HUMAN	alanyl-tRNA synthetase	485					alanyl-tRNA aminoacylation|tRNA processing	cytosol|soluble fraction	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			pancreas(1)	1		Ovarian(137;0.0365)		BRCA - Breast invasive adenocarcinoma(221;0.161)	L-Alanine(DB00160)	ATTGTACTTTGGGGAATCATC	0.517													22	37					0	0	1	0	0
COG4	25839	broad.mit.edu	37	16	70543268	70543268	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70543268G>A	uc002ezc.2	-	7	879	c.868C>T	c.(868-870)CAC>TAC	p.H290Y	COG4_uc002ezb.2_5'UTR|COG4_uc010cfu.2_RNA|COG4_uc002ezd.2_Missense_Mutation_p.H290Y|COG4_uc002eze.2_5'UTR	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	component of oligomeric golgi complex 4	286					Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0		Ovarian(137;0.0694)				ATTGGCTGGTGGGTCTCCACA	0.473													18	60					0	0	1	0	0
SF3B3	23450	broad.mit.edu	37	16	70605012	70605012	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70605012C>T	uc002ezf.2	+	25	3634	c.3423C>T	c.(3421-3423)TTC>TTT	p.F1141F		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	1141					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				ATGACTTCTTCCAGCATGTGG	0.498													51	136					0	0	1	0	0
IL34	146433	broad.mit.edu	37	16	70693520	70693520	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70693520G>A	uc002ezh.1	+	5	786	c.403_splice	c.e5-1	p.D135_splice	IL34_uc002ezi.1_Splice_Site_p.D134_splice	NM_152456	NP_689669	Q6ZMJ4	IL34_HUMAN	interleukin 34 precursor						positive regulation of cell proliferation|positive regulation of protein phosphorylation	extracellular space	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding			central_nervous_system(1)|skin(1)	2						CTCCTTTCCAGGATGTGGAGG	0.627													8	26					0	0	1	0	0
VAC14	55697	broad.mit.edu	37	16	70778438	70778438	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70778438G>A	uc002ezm.2	-	13	1674	c.1416C>T	c.(1414-1416)TCC>TCT	p.S472S	VAC14_uc010cfw.2_Silent_p.S238S|VAC14_uc002ezn.2_Silent_p.S37S|VAC14_uc010cfx.1_5'UTR	NM_018052	NP_060522	Q08AM6	VAC14_HUMAN	Vac14 homolog	472	HEAT 5.				interspecies interaction between organisms	endoplasmic reticulum|endosome membrane|microsome	protein binding|receptor activity			pancreas(1)|skin(1)	2		Ovarian(137;0.0699)				GGCCTGCGGGGGAGGAAGCGA	0.672													10	54					0	0	1	0	0
VAC14	55697	broad.mit.edu	37	16	70820186	70820186	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70820186A>C	uc002ezm.2	-	2	445	c.187T>G	c.(187-189)TCT>GCT	p.S63A	VAC14_uc010cfw.2_Intron|VAC14_uc002ezn.2_5'UTR	NM_018052	NP_060522	Q08AM6	VAC14_HUMAN	Vac14 homolog	63					interspecies interaction between organisms	endoplasmic reticulum|endosome membrane|microsome	protein binding|receptor activity			pancreas(1)|skin(1)	2		Ovarian(137;0.0699)				GGGTGCTGAGACAGGGCAAAC	0.612													33	76					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70841800	70841800	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70841800G>A	uc002ezr.2	-	86	15174	c.15046C>T	c.(15046-15048)CTC>TTC	p.L5016F	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5017										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ATTCCAAAGAGGGGGATGATA	0.537													31	69					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70841825	70841825	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70841825G>A	uc002ezr.2	-	86	15149	c.15021C>T	c.(15019-15021)CTC>CTT	p.L5007L	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5008										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTCCACCTGCGAGCGATGATA	0.587													16	76					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70863576	70863576	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70863576G>A	uc002ezr.2	-	81	14182	c.14054C>T	c.(14053-14055)CCC>CTC	p.P4685L	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4686										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GATCTCATAGGGCTTGTTTTG	0.587													4	13					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70871758	70871758	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70871758G>A	uc002ezr.2	-	77	13202	c.13074C>T	c.(13072-13074)CTC>CTT	p.L4358L	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4359										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGTTCACCTCGAGGTGAGTGG	0.453													24	46					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70928354	70928354	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70928354G>A	uc002ezr.2	-	55	9371	c.9243C>T	c.(9241-9243)TTC>TTT	p.F3081F		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3082										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CCAGTTACCTGAACGCGATCT	0.522													12	46					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70934981	70934981	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70934981C>T	uc002ezr.2	-	53	9099	c.8971G>A	c.(8971-8973)GAG>AAG	p.E2991K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2992										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TACTCAGCCTCAGGGGGGATG	0.572													23	197					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70954625	70954625	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70954625C>T	uc002ezr.2	-	46	7779	c.7651G>A	c.(7651-7653)GGG>AGG	p.G2551R		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2552										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				tcctcctccccttccccctcc	0.189													3	7					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70954982	70954982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:70954982G>A	uc002ezr.2	-	46	7422	c.7294C>T	c.(7294-7296)CCT>TCT	p.P2432S		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2433										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGGACAAGAGGAAGCCCATGC	0.458													31	126					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71015363	71015363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71015363C>T	uc002ezr.2	-	29	4566	c.4438G>A	c.(4438-4440)GAA>AAA	p.E1480K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1481										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTGATATTTTCTGGGTCCAGG	0.478													29	67					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71025230	71025230	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71025230C>T	uc002ezr.2	-	25	3983	c.3855G>A	c.(3853-3855)GTG>GTA	p.V1285V		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1285										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CATCTGAGATCACACTGGAAG	0.463													28	87					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71025259	71025259	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71025259C>A	uc002ezr.2	-	25	3954	c.3826G>T	c.(3826-3828)GAA>TAA	p.E1276*		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1276										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTTCTTAGTTCTTTTTCTTCA	0.473													32	78					4.34311e-12	4.3603e-12	1	1	0
HYDIN	54768	broad.mit.edu	37	16	71096192	71096192	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71096192G>A	uc002ezr.2	-	17	2384	c.2256C>T	c.(2254-2256)CCC>CCT	p.P752P	HYDIN_uc010cfz.1_Silent_p.P497P|HYDIN_uc002ezv.2_Silent_p.P752P|HYDIN_uc010vmc.1_Silent_p.P769P|HYDIN_uc010vmd.1_Silent_p.P779P	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	752										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGACCCCGCTGGGGGTGGGGC	0.552													3	7					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71103356	71103356	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71103356G>A	uc002ezr.2	-	14	1916	c.1788C>T	c.(1786-1788)CCC>CCT	p.P596P	HYDIN_uc010cfz.1_Silent_p.P341P|HYDIN_uc002ezv.2_Silent_p.P596P|HYDIN_uc010vmc.1_Silent_p.P613P|HYDIN_uc010vmd.1_Silent_p.P623P|HYDIN_uc002ezw.3_Silent_p.P613P	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	596										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGTAAGTCATGGGGATCAAAG	0.443													11	38					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71163622	71163622	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71163622C>T	uc002ezr.2	-	9	1276	c.1148G>A	c.(1147-1149)CGA>CAA	p.R383Q	HYDIN_uc010cfz.1_Missense_Mutation_p.R128Q|HYDIN_uc002ezv.2_Missense_Mutation_p.R383Q|HYDIN_uc010vmc.1_Missense_Mutation_p.R400Q|HYDIN_uc010vmd.1_Missense_Mutation_p.R410Q|HYDIN_uc002ezw.3_Missense_Mutation_p.R400Q	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	383										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CGCAAAGGTTCGGGACAGAAC	0.443													15	31					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71163629	71163629	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71163629G>A	uc002ezr.2	-	9	1269	c.1141C>T	c.(1141-1143)CTG>TTG	p.L381L	HYDIN_uc010cfz.1_Silent_p.L126L|HYDIN_uc002ezv.2_Silent_p.L381L|HYDIN_uc010vmc.1_Silent_p.L398L|HYDIN_uc010vmd.1_Silent_p.L408L|HYDIN_uc002ezw.3_Silent_p.L398L	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	381										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTTCGGGACAGAACAGAAAGA	0.458													13	26					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71209547	71209547	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71209547G>A	uc002ezr.2	-	5	607	c.479C>T	c.(478-480)TCC>TTC	p.S160F	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.S160F|HYDIN_uc010vmc.1_Missense_Mutation_p.S177F|HYDIN_uc010vmd.1_Missense_Mutation_p.S187F|HYDIN_uc002ezw.3_Missense_Mutation_p.S177F	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	160										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TCGGAATATGGAAGGCACTCC	0.433													20	94					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71218869	71218869	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71218869C>T	uc002ezr.2	-	3	288	c.160G>A	c.(160-162)GAA>AAA	p.E54K	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.E54K|HYDIN_uc010vmc.1_Missense_Mutation_p.E71K|HYDIN_uc010vmd.1_Missense_Mutation_p.E81K|HYDIN_uc002ezw.3_Missense_Mutation_p.E71K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	54										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGGGACATTTCCTTCAGGAAC	0.408													20	70					0	0	1	0	0
FTSJD1	55783	broad.mit.edu	37	16	71317926	71317926	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71317926G>A	uc010cga.2	-	3	2304	c.1898C>T	c.(1897-1899)TCA>TTA	p.S633L	FTSJD1_uc002ezy.3_Missense_Mutation_p.S633L|FTSJD1_uc002ezz.3_Missense_Mutation_p.S633L	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	633						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						CTCCCGCAATGAATGTAGAAG	0.403													9	94					0	0	1	0	0
FTSJD1	55783	broad.mit.edu	37	16	71319397	71319397	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71319397G>T	uc010cga.2	-	3	833	c.427C>A	c.(427-429)CTT>ATT	p.L143I	FTSJD1_uc002ezy.3_Missense_Mutation_p.L143I|FTSJD1_uc002ezz.3_Missense_Mutation_p.L143I	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	143						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						GCTTCACAAAGGTGTAGAGAA	0.413													21	113					7.41877e-09	7.44078e-09	1	1	0
CALB2	794	broad.mit.edu	37	16	71408680	71408680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71408680G>A	uc002faa.3	+	3	274	c.204G>A	c.(202-204)ATG>ATA	p.M68I	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_Missense_Mutation_p.M68I	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	68	EF-hand 2.						calcium ion binding				0		Ovarian(137;0.125)				GAGAAAAGATGAAGGAGTTCA	0.478													16	50					0	0	1	0	0
CALB2	794	broad.mit.edu	37	16	71411594	71411594	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71411594G>A	uc002faa.3	+	4	356	c.286G>A	c.(286-288)GAG>AAG	p.E96K	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_Missense_Mutation_p.E96K	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	96	EF-hand 2.						calcium ion binding				0		Ovarian(137;0.125)				GCCAACCGAAGAGAACTTCCT	0.552													21	71					0	0	1	0	0
CALB2	794	broad.mit.edu	37	16	71423699	71423699	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71423699C>T	uc002faa.3	+	11	817	c.747C>T	c.(745-747)TCC>TCT	p.S249S	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_3'UTR	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	249	EF-hand 6.						calcium ion binding				0		Ovarian(137;0.125)				GCGTCATGTCCTTGGCAGAGG	0.562													39	201					0	0	1	0	0
ZNF23	7571	broad.mit.edu	37	16	71483463	71483463	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71483463G>A	uc002faf.2	-	6	1279	c.465C>T	c.(463-465)CTC>CTT	p.L155L	ZNF23_uc002fad.2_Silent_p.L97L|ZNF23_uc002fae.2_Silent_p.L97L|ZNF23_uc010vmf.1_Silent_p.L97L|ZNF23_uc002fag.2_Silent_p.L97L|ZNF23_uc002fah.2_Silent_p.L155L|ZNF23_uc002fai.2_Silent_p.L194L	NM_145911	NP_666016	P17027	ZNF23_HUMAN	zinc finger protein 23	155					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(137;0.00768)		BRCA - Breast invasive adenocarcinoma(221;0.0686)		CATGCTTCACGAGTTTTGTAT	0.393													27	91					0	0	1	0	0
ZNF23	7571	broad.mit.edu	37	16	71483628	71483628	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71483628C>T	uc002faf.2	-	6	1114	c.300G>A	c.(298-300)AAG>AAA	p.K100K	ZNF23_uc002fad.2_Silent_p.K42K|ZNF23_uc002fae.2_Silent_p.K42K|ZNF23_uc010vmf.1_Silent_p.K42K|ZNF23_uc002fag.2_Silent_p.K42K|ZNF23_uc002fah.2_Silent_p.K100K|ZNF23_uc002fai.2_Silent_p.K139K	NM_145911	NP_666016	P17027	ZNF23_HUMAN	zinc finger protein 23	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(137;0.00768)		BRCA - Breast invasive adenocarcinoma(221;0.0686)		TGCTCTTCTCCTTCTTTATAT	0.408													60	213					0	0	1	0	0
ZNF23	7571	broad.mit.edu	37	16	71487187	71487187	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71487187G>A	uc002faf.2	-	5	915	c.101C>T	c.(100-102)TCT>TTT	p.S34F	ZNF23_uc002fad.2_5'UTR|ZNF23_uc002fae.2_5'UTR|ZNF23_uc010vmf.1_Intron|ZNF23_uc002fag.2_5'UTR|ZNF23_uc002fah.2_Missense_Mutation_p.S34F|ZNF23_uc002fai.2_Missense_Mutation_p.S72F	NM_145911	NP_666016	P17027	ZNF23_HUMAN	zinc finger protein 23	34	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(137;0.00768)		BRCA - Breast invasive adenocarcinoma(221;0.0686)		AGCCAGTGGAGATGAGCCCCC	0.517													3	13					0	0	1	0	0
CHST4	10164	broad.mit.edu	37	16	71571673	71571673	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71571673G>A	uc002fan.2	+	2	1274	c.1093G>A	c.(1093-1095)GAA>AAA	p.E365K	CHST4_uc002fao.2_Missense_Mutation_p.E365K	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	365	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						CGTCAGATCTGAACAAGAACA	0.522											OREG0023923	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	71					0	0	1	0	0
TAT	6898	broad.mit.edu	37	16	71602047	71602047	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71602047C>T	uc002fap.2	-	12	1464	c.1365G>A	c.(1363-1365)TAG>TAA	p.*455*		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	455					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	GGATGCAGGCCTATTTATCAC	0.597													17	59					0	0	1	0	0
TAT	6898	broad.mit.edu	37	16	71602144	71602144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71602144G>A	uc002fap.2	-	12	1367	c.1268C>T	c.(1267-1269)CCC>CTC	p.P423L		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	423					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	CATCACCTCGGGGACTGTGAT	0.522													9	48					0	0	1	0	0
TAT	6898	broad.mit.edu	37	16	71602146	71602146	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71602146G>A	uc002fap.2	-	12	1365	c.1266C>T	c.(1264-1266)GTC>GTT	p.V422V		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	422					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	TCACCTCGGGGACTGTGATGA	0.512													5	50					0	0	1	0	0
TAT	6898	broad.mit.edu	37	16	71604216	71604216	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71604216G>A	uc002fap.2	-	9	1096	c.997C>T	c.(997-999)CGC>TGC	p.R333C		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	333					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	CCCGGGGTGCGACATAGGATG	0.547													22	52					0	0	1	0	0
TAT	6898	broad.mit.edu	37	16	71604584	71604584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71604584C>T	uc002fap.2	-	8	1009	c.910G>A	c.(910-912)GAG>AAG	p.E304K		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	304					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	ATTATCACCTCATTGCCAAAA	0.463													16	49					0	0	1	0	0
TAT	6898	broad.mit.edu	37	16	71610209	71610209	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71610209C>T	uc002fap.2	-	2	209	c.110G>A	c.(109-111)AGA>AAA	p.R37K	TAT_uc002faq.2_Missense_Mutation_p.R37K|TAT_uc002far.2_Missense_Mutation_p.R37K	NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	37					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	CCTGGCCTTTCTGCCTTTCAT	0.502													23	55					0	0	1	0	0
PHLPP2	23035	broad.mit.edu	37	16	71683038	71683038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:71683038C>T	uc002fax.2	-	18	3733	c.3727G>A	c.(3727-3729)GGC>AGC	p.G1243S	PHLPP2_uc002fav.2_Intron|PHLPP2_uc010cgf.2_Missense_Mutation_p.G1176S	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	1243						cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						ACAATAGAGCCATTGGAGAGT	0.522													6	97					0	0	1	0	0
HP	3240	broad.mit.edu	37	16	72094210	72094210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72094210G>A	uc002fbr.3	+	7	686	c.642G>A	c.(640-642)GCG>GCA	p.A214A	TXNL4B_uc010cgl.2_Intron|HP_uc010cgm.2_Silent_p.A155A|HP_uc002fbt.3_Silent_p.A155A|HP_uc002fbu.1_5'UTR|HP_uc002fbv.3_Silent_p.A125A|HP_uc002fbw.3_Silent_p.A36A|HP_uc002fbx.3_Silent_p.A36A|HPR_uc002fby.2_5'Flank	NM_005143	NP_005134	P00738	HPT_HUMAN	haptoglobin isoform 1 preproprotein	214	Peptidase S1.				cellular iron ion homeostasis|defense response|negative regulation of hydrogen peroxide catabolic process|negative regulation of oxidoreductase activity|positive regulation of cell death|proteolysis|response to hydrogen peroxide	extracellular region|haptoglobin-hemoglobin complex	hemoglobin binding|serine-type endopeptidase activity				0		Renal(780;9.67e-05)|Ovarian(137;0.00327)|Hepatocellular(780;0.114)		BRCA - Breast invasive adenocarcinoma(221;0.00015)|Kidney(780;0.000529)		ATGCAACAGCGAAAGACATTG	0.453													23	50					0	0	1	0	0
HPR	3250	broad.mit.edu	37	16	72110569	72110569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72110569G>A	uc002fby.2	+	5	666	c.636G>A	c.(634-636)AAG>AAA	p.K212K	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	212	Peptidase S1.				proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				TACCTTCAAAGAATTATGCAG	0.458													39	87					0	0	1	0	0
DHX38	9785	broad.mit.edu	37	16	72146332	72146332	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72146332C>T	uc002fcb.2	+	27	3975	c.3620C>T	c.(3619-3621)CCA>CTA	p.P1207L	DHX38_uc010vmp.1_Missense_Mutation_p.P519L	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	1207					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				ATCTACACTCCAGGCCGGAAA	0.627													42	74					0	0	1	0	0
PMFBP1	83449	broad.mit.edu	37	16	72156856	72156856	+	Nonsense_Mutation	SNP	G	A	A	rs140352254		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72156856G>A	uc002fcc.3	-	19	2912	c.2740C>T	c.(2740-2742)CGA>TGA	p.R914*	PMFBP1_uc002fcd.2_Nonsense_Mutation_p.R909*|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Nonsense_Mutation_p.R764*	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	914										ovary(2)	2		Ovarian(137;0.179)				ACCTGCTCTCGGAGCTGGTTT	0.532													14	33					0	0	1	0	0
PMFBP1	83449	broad.mit.edu	37	16	72164243	72164243	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72164243C>T	uc002fcc.3	-	12	1838	c.1666G>A	c.(1666-1668)GAG>AAG	p.E556K	PMFBP1_uc002fcd.2_Missense_Mutation_p.E551K|PMFBP1_uc002fce.2_Intron|PMFBP1_uc002fcf.2_Missense_Mutation_p.E406K|PMFBP1_uc010cgo.1_5'Flank	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	556	Potential.									ovary(2)	2		Ovarian(137;0.179)				AATGACAGCTCCTCCACCCGT	0.478													25	41					0	0	1	0	0
PMFBP1	83449	broad.mit.edu	37	16	72198665	72198665	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72198665G>A	uc002fcc.3	-	3	335	c.163C>T	c.(163-165)CAC>TAC	p.H55Y	PMFBP1_uc002fcd.2_Missense_Mutation_p.H55Y|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	55										ovary(2)	2		Ovarian(137;0.179)				TCCCTTACGTGGCTGCTGTTC	0.522													9	89					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72992610	72992610	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72992610C>T	uc002fck.2	-	2	2108	c.1435G>A	c.(1435-1437)GAG>AAG	p.E479K	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	479	Poly-Glu.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				tcctcctcctcttcttcctcc	0.318													10	50					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72992819	72992819	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72992819G>A	uc002fck.2	-	2	1899	c.1226C>T	c.(1225-1227)TCG>TTG	p.S409L	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	409					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CTTCAGTACCGAGCTGGTGAG	0.657													20	147					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72992967	72992967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72992967G>A	uc002fck.2	-	2	1751	c.1078C>T	c.(1078-1080)CCC>TCC	p.P360S	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	360					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CTGTGTCCGGGGCCTATGAGG	0.522													50	78					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72993643	72993643	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72993643G>A	uc002fck.2	-	2	1075	c.402C>T	c.(400-402)GTC>GTT	p.V134V	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	134					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CCGGCTGGTAGACGATCTCCC	0.711													15	50					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72993646	72993646	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:72993646G>A	uc002fck.2	-	2	1072	c.399C>T	c.(397-399)ATC>ATT	p.I133I	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	133					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GCTGGTAGACGATCTCCCCGG	0.711													17	47					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	74425514	74425514	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:74425514C>A	uc010vmt.1	+	6	686	c.685C>A	c.(685-687)CTT>ATT	p.L229I						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		TCTTGCTCCTCTTCCACCCTC	0.502													21	311					2.65835e-16	2.67073e-16	1	1	0
RFWD3	55159	broad.mit.edu	37	16	74662525	74662525	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:74662525G>A	uc002fda.2	-	11	1892	c.1794C>T	c.(1792-1794)GCC>GCT	p.A598A	RFWD3_uc010vmx.1_Silent_p.A118A|RFWD3_uc010cgq.2_Silent_p.A598A	NM_018124	NP_060594	Q6PCD5	RFWD3_HUMAN	ring finger and WD repeat domain 3	598	WD 3.				DNA repair|mitotic cell cycle G1/S transition DNA damage checkpoint|response to ionizing radiation	nucleus	MDM2 binding|p53 binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|breast(1)	3						ATGCAGCTGAGGCAGCTCTGG	0.517													56	152					0	0	1	0	0
MLKL	197259	broad.mit.edu	37	16	74708868	74708868	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:74708868G>A	uc002fdb.2	-	10	1812	c.1371C>T	c.(1369-1371)CCC>CCT	p.P457P	MLKL_uc002fdc.2_Silent_p.P249P	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	457	Protein kinase.						ATP binding|protein binding|protein kinase activity			stomach(2)	2						CATCCACAGAGGGCCGCACAG	0.527													24	55					0	0	1	0	0
MLKL	197259	broad.mit.edu	37	16	74729435	74729435	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:74729435C>T	uc002fdb.2	-	2	662	c.221G>A	c.(220-222)GGG>GAG	p.G74E	MLKL_uc002fdc.2_Missense_Mutation_p.G74E	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	74							ATP binding|protein binding|protein kinase activity			stomach(2)	2						TTCTATCTCCCCATTAGCCTC	0.498													14	104					0	0	1	0	0
FA2H	79152	broad.mit.edu	37	16	74750319	74750319	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:74750319G>A	uc002fde.1	-	6	1033	c.965C>T	c.(964-966)TCG>TTG	p.S322L	FA2H_uc002fdd.1_Missense_Mutation_p.S95L|FA2H_uc010vmy.1_RNA	NM_024306	NP_077282	Q7L5A8	FA2H_HUMAN	fatty acid 2-hydroxylase	322					cell death|electron transport chain|fatty acid biosynthetic process|sphingolipid metabolic process|transport	endoplasmic reticulum membrane|integral to membrane|microsome	heme binding|oxidoreductase activity				0						CTTGTGCGGCGAGCCAAAGTG	0.602													23	33					0	0	1	0	0
LDHD	197257	broad.mit.edu	37	16	75146541	75146541	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:75146541C>T	uc002fdm.2	-	10	1364	c.1317G>A	c.(1315-1317)GAG>GAA	p.E439E	LDHD_uc002fdn.2_Silent_p.E416E	NM_153486	NP_705690	Q86WU2	LDHD_HUMAN	D-lactate dehydrogenase isoform 1 precursor	439							D-lactate dehydrogenase (cytochrome) activity|flavin adenine dinucleotide binding|protein binding				0						TGCCCAGTTCCTCGGCGTCAT	0.607													16	36					0	0	1	0	0
ZFP1	162239	broad.mit.edu	37	16	75203605	75203605	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:75203605C>T	uc002fdo.2	+	4	761	c.597C>T	c.(595-597)CTC>CTT	p.L199L	ZFP1_uc002fdp.2_Silent_p.L144L|ZFP1_uc010cgt.2_Silent_p.L166L|ZFP1_uc010cgs.2_Silent_p.L144L|ZFP1_uc002fdq.2_Silent_p.L199L	NM_153688	NP_710155	Q6P2D0	ZFP1_HUMAN	zinc finger protein 1 homolog	199	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGTCACTCCTCATTAGTCATA	0.358													13	44					0	0	1	0	0
CTRB1	1504	broad.mit.edu	37	16	75258657	75258657	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:75258657G>A	uc002fds.2	+	7	707	c.685G>A	c.(685-687)GGC>AGC	p.G229S		NM_001906	NP_001897			chymotrypsin B1 precursor												0				BRCA - Breast invasive adenocarcinoma(221;0.166)		GACCCTGGTGGGCATTGTGTC	0.647													19	72					0	0	1	0	0
CHST6	4166	broad.mit.edu	37	16	75513171	75513171	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:75513171G>A	uc002fef.2	-	3	736	c.556C>T	c.(556-558)CCG>TCG	p.P186S	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Missense_Mutation_p.P186S	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	186	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						CTGAGCAGCGGGTAGAGCACC	0.701													21	66					0	0	1	0	0
CHST5	23563	broad.mit.edu	37	16	75563854	75563854	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:75563854G>A	uc002fei.2	-	3	1824	c.429C>T	c.(427-429)TTC>TTT	p.F143F	CHST5_uc002fej.1_Silent_p.F149F	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	143	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						TTGCCCAGTTGAAAAAGGCGG	0.607													33	72					0	0	1	0	0
KARS	3735	broad.mit.edu	37	16	75675519	75675519	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:75675519G>A	uc002feq.2	-	2	213	c.165C>T	c.(163-165)GCC>GCT	p.A55A	KARS_uc002fer.2_Silent_p.A83A|KARS_uc002fes.2_5'UTR|KARS_uc010cgz.2_5'Flank|KARS_uc010cha.1_Silent_p.A92A	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	55				Missing: Loss of nuclear localization, but no effect on packaging into HIV-1.	interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	TGTGGTTGGTGGCAGCAGCAG	0.537													13	50					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76482830	76482830	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:76482830C>T	uc002feu.1	+	8	1294	c.909C>T	c.(907-909)CTC>CTT	p.L303L	CNTNAP4_uc002fev.1_Silent_p.L215L|CNTNAP4_uc010chb.1_Silent_p.L278L|CNTNAP4_uc002fex.1_Silent_p.L306L|CNTNAP4_uc002few.2_Silent_p.L278L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	303	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						AATTCAATCTCATGAATCTTG	0.388													9	12					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76556101	76556101	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:76556101C>T	uc002feu.1	+	19	3087	c.2702C>T	c.(2701-2703)CCC>CTC	p.P901L	CNTNAP4_uc002fev.1_Missense_Mutation_p.P765L|CNTNAP4_uc010chb.1_Missense_Mutation_p.P828L|CNTNAP4_uc002fex.1_Missense_Mutation_p.P904L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	901	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						AAGACACAGCCCGCCCCCGCT	0.493													8	75					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76569600	76569600	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:76569600G>A	uc002feu.1	+	20	3299	c.2914G>A	c.(2914-2916)GGA>AGA	p.G972R	CNTNAP4_uc002fev.1_Missense_Mutation_p.G836R|CNTNAP4_uc010chb.1_Missense_Mutation_p.G899R|CNTNAP4_uc002fex.1_Missense_Mutation_p.G975R	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	972	Extracellular (Potential).|EGF-like 2.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						ATGCCGCAATGGAGGGAAATG	0.502													13	30					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76572088	76572088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:76572088C>T	uc002feu.1	+	21	3456	c.3071C>T	c.(3070-3072)TCC>TTC	p.S1024F	CNTNAP4_uc002fev.1_Missense_Mutation_p.S888F|CNTNAP4_uc010chb.1_Missense_Mutation_p.S951F|CNTNAP4_uc002fex.1_Missense_Mutation_p.S1027F	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1024	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						AGTAAAAACTCCAGCTCCCAC	0.333													10	46					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76573651	76573651	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:76573651C>T	uc002feu.1	+	22	3641	c.3256C>T	c.(3256-3258)CAA>TAA	p.Q1086*	CNTNAP4_uc002fev.1_Nonsense_Mutation_p.Q950*|CNTNAP4_uc010chb.1_Nonsense_Mutation_p.Q1013*|CNTNAP4_uc002fex.1_Nonsense_Mutation_p.Q1089*	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1086	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						AAATAAATATCAAGAGCCTGA	0.343													22	40					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76573658	76573658	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:76573658C>T	uc002feu.1	+	22	3648	c.3263C>T	c.(3262-3264)CCT>CTT	p.P1088L	CNTNAP4_uc002fev.1_Missense_Mutation_p.P952L|CNTNAP4_uc010chb.1_Missense_Mutation_p.P1015L|CNTNAP4_uc002fex.1_Missense_Mutation_p.P1091L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1088	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TATCAAGAGCCTGATGTTGTT	0.348													14	50					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76573717	76573717	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:76573717A>C	uc002feu.1	+	22	3707	c.3322A>C	c.(3322-3324)ATT>CTT	p.I1108L	CNTNAP4_uc002fev.1_Missense_Mutation_p.I972L|CNTNAP4_uc010chb.1_Missense_Mutation_p.I1035L|CNTNAP4_uc002fex.1_Missense_Mutation_p.I1111L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1108	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CCACATAATGATTAACAGAGA	0.348													29	87					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76587742	76587742	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:76587742G>A	uc002feu.1	+	25	4056	c.3671G>A	c.(3670-3672)GGA>GAA	p.G1224E	CNTNAP4_uc002fev.1_Missense_Mutation_p.G1088E|CNTNAP4_uc010chb.1_Missense_Mutation_p.G1151E|CNTNAP4_uc002fex.1_Missense_Mutation_p.G1227E	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1224	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GATCATTCTGGAACAATAGAT	0.373													4	19					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77327083	77327083	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77327083G>A	uc002ffc.3	-	20	3498	c.3079C>T	c.(3079-3081)CCC>TCC	p.P1027S	ADAMTS18_uc010chc.1_Missense_Mutation_p.P615S	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1027	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGGCTCTCGGGGAGGGTTTCT	0.572													46	86					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353831	77353831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77353831C>T	uc002ffc.3	-	16	2866	c.2447G>A	c.(2446-2448)GGG>GAG	p.G816E	ADAMTS18_uc010chc.1_Missense_Mutation_p.G404E|ADAMTS18_uc002ffe.1_Missense_Mutation_p.G512E	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	816	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AAACGTGGTCCCAGCGAAGGG	0.572													12	82					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353842	77353842	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77353842G>A	uc002ffc.3	-	16	2855	c.2436C>T	c.(2434-2436)TTC>TTT	p.F812F	ADAMTS18_uc010chc.1_Silent_p.F400F|ADAMTS18_uc002ffe.1_Silent_p.F508F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	812	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CAGCGAAGGGGAACTCCCCAG	0.572													13	78					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353848	77353848	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77353848C>T	uc002ffc.3	-	16	2849	c.2430G>A	c.(2428-2430)GGG>GGA	p.G810G	ADAMTS18_uc010chc.1_Silent_p.G398G|ADAMTS18_uc002ffe.1_Silent_p.G506G	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	810	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AGGGGAACTCCCCAGGCCAGT	0.577													26	65					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77359766	77359766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77359766C>T	uc002ffc.3	-	13	2448	c.2029G>A	c.(2029-2031)GAA>AAA	p.E677K	ADAMTS18_uc010chc.1_Missense_Mutation_p.E265K|ADAMTS18_uc002ffe.1_Missense_Mutation_p.E373K	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	677	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AAATTACCTTCCACTTTTGTA	0.373													10	53					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77369707	77369707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77369707G>A	uc002ffc.3	-	12	2224	c.1805C>T	c.(1804-1806)TCC>TTC	p.S602F	ADAMTS18_uc010chc.1_Missense_Mutation_p.S190F|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S298F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	602	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ACATGTCCGGGAACATTCTGA	0.567													76	172					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77387698	77387698	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77387698C>T	uc002ffc.3	-	10	1965	c.1546G>A	c.(1546-1548)GAT>AAT	p.D516N	ADAMTS18_uc010chc.1_Missense_Mutation_p.D104N|ADAMTS18_uc002ffe.1_Missense_Mutation_p.D212N	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	516	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GTGTCAGCATCATAAATCTGT	0.428													45	121					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77389848	77389848	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77389848C>T	uc002ffc.3	-	9	1868	c.1449G>A	c.(1447-1449)AAG>AAA	p.K483K	ADAMTS18_uc010chc.1_Silent_p.K71K|ADAMTS18_uc002ffe.1_Silent_p.K179K|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	483	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGAGGAATTTCTTGAGATACT	0.478													10	105					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77389943	77389943	+	Missense_Mutation	SNP	G	A	A	rs149929752		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77389943G>A	uc002ffc.3	-	9	1773	c.1354C>T	c.(1354-1356)CCC>TCC	p.P452S	ADAMTS18_uc010chc.1_Missense_Mutation_p.P40S|ADAMTS18_uc002ffe.1_Missense_Mutation_p.P148S|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	452	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding	p.P452S(1)		large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TTTCTGCAGGGATTCCCTTCT	0.428													41	65					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77401379	77401379	+	Missense_Mutation	SNP	C	T	T	rs146432168		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77401379C>T	uc002ffc.3	-	4	1156	c.737G>A	c.(736-738)CGA>CAA	p.R246Q	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	246					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TTGCAACCTTCGATGGTGATA	0.483													28	64					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77401432	77401432	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77401432G>A	uc002ffc.3	-	4	1103	c.684C>T	c.(682-684)TCC>TCT	p.S228S	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	228					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGTGACTTGGGGAGTAACCAG	0.517													22	52					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77401535	77401535	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77401535G>A	uc002ffc.3	-	4	1000	c.581C>T	c.(580-582)CCT>CTT	p.P194L	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	194					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GTGACCCGCAGGGGAGCTGTA	0.507													30	58					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77401587	77401587	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77401587G>A	uc002ffc.3	-	4	948	c.529C>T	c.(529-531)CTC>TTC	p.L177F	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	177					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GGCGAGATGAGGAATTCATTT	0.468													22	80					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77465424	77465424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77465424C>T	uc002ffc.3	-	3	682	c.263G>A	c.(262-264)CGA>CAA	p.R88Q	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	88					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CTGCGCCGATCGCTTTTTCCT	0.483													48	278					0	0	1	0	0
VAT1L	57687	broad.mit.edu	37	16	77910348	77910348	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77910348C>T	uc002ffg.1	+	5	901	c.804C>T	c.(802-804)CCC>CCT	p.P268P		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	268							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						TTCTCAAACCCCTGGGAACCT	0.473													23	109					0	0	1	0	0
VAT1L	57687	broad.mit.edu	37	16	77918525	77918525	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:77918525G>A	uc002ffg.1	+	7	1000	c.903G>A	c.(901-903)GTG>GTA	p.V301V		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	301							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						TGGAGAAGGTGAACCCCATCA	0.512													10	15					0	0	1	0	0
VAT1L	57687	broad.mit.edu	37	16	78005818	78005818	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:78005818C>T	uc002ffg.1	+	8	1246	c.1149C>T	c.(1147-1149)ACC>ACT	p.T383T		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	383							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						TAGAAAAGACCCCAACTCCAC	0.532											OREG0023950	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	65	222					0	0	1	0	0
CLEC3A	10143	broad.mit.edu	37	16	78062033	78062033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:78062033G>A	uc002ffh.3	+	2	226	c.145G>A	c.(145-147)GAA>AAA	p.E49K		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	49					skeletal system development	extracellular region	sugar binding				0						GACTCAAATTGAAAAGCTCTG	0.443													33	54					0	0	1	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064729	78064729	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:78064729C>T	uc002ffh.3	+	3	666	c.585C>T	c.(583-585)ATC>ATT	p.I195I		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	195					skeletal system development	extracellular region	sugar binding				0						AGTTCACCATCCCTCAATAGG	0.423													5	42					0	0	1	0	0
WWOX	51741	broad.mit.edu	37	16	78458811	78458811	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:78458811C>T	uc002ffk.2	+	7	775	c.650C>T	c.(649-651)CCC>CTC	p.P217L	WWOX_uc010vnk.1_Missense_Mutation_p.P104L|WWOX_uc002ffl.2_Intron|WWOX_uc010che.2_Intron	NM_016373	NP_057457	Q9NZC7	WWOX_HUMAN	WW domain-containing oxidoreductase isoform 1	217	Interaction with MAPT (By similarity).|Mediates targeting to the mitochondria (By similarity).				apoptosis|negative regulation of Wnt receptor signaling pathway|steroid metabolic process|Wnt receptor signaling pathway	Golgi apparatus|mitochondrion|nucleus	coenzyme binding|oxidoreductase activity|protein dimerization activity				0		all_cancers(2;1.97e-181)|all_epithelial(2;3.85e-160)|all_lung(2;2.03e-39)|Lung NSC(2;7.16e-35)|Colorectal(2;6.96e-21)|all_hematologic(2;1.13e-16)|Melanoma(2;5.16e-06)|all_neural(2;8.84e-06)|Renal(2;5.26e-05)|Medulloblastoma(2;0.00498)|Breast(2;0.00631)|Lung SC(2;0.0261)|Prostate(104;0.167)		UCEC - Uterine corpus endometrioid carcinoma (2;0.012)|Epithelial(1;2.65e-39)|all cancers(1;3.26e-34)|STAD - Stomach adenocarcinoma(1;5.1e-20)|COAD - Colon adenocarcinoma(1;1.04e-11)|Colorectal(1;3.4e-11)|OV - Ovarian serous cystadenocarcinoma(1;1.01e-10)|BRCA - Breast invasive adenocarcinoma(1;0.00196)|Kidney(780;0.232)		TTTGCTCTACCCTGGAGTCTC	0.468													130	288					0	0	1	0	0
WWOX	51741	broad.mit.edu	37	16	78458888	78458888	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:78458888C>T	uc002ffk.2	+	7	852	c.727C>T	c.(727-729)CTC>TTC	p.L243F	WWOX_uc010vnk.1_Missense_Mutation_p.L130F|WWOX_uc002ffl.2_Intron|WWOX_uc010che.2_Intron	NM_016373	NP_057457	Q9NZC7	WWOX_HUMAN	WW domain-containing oxidoreductase isoform 1	243	Interaction with MAPT (By similarity).|Mediates targeting to the mitochondria (By similarity).				apoptosis|negative regulation of Wnt receptor signaling pathway|steroid metabolic process|Wnt receptor signaling pathway	Golgi apparatus|mitochondrion|nucleus	coenzyme binding|oxidoreductase activity|protein dimerization activity				0		all_cancers(2;1.97e-181)|all_epithelial(2;3.85e-160)|all_lung(2;2.03e-39)|Lung NSC(2;7.16e-35)|Colorectal(2;6.96e-21)|all_hematologic(2;1.13e-16)|Melanoma(2;5.16e-06)|all_neural(2;8.84e-06)|Renal(2;5.26e-05)|Medulloblastoma(2;0.00498)|Breast(2;0.00631)|Lung SC(2;0.0261)|Prostate(104;0.167)		UCEC - Uterine corpus endometrioid carcinoma (2;0.012)|Epithelial(1;2.65e-39)|all cancers(1;3.26e-34)|STAD - Stomach adenocarcinoma(1;5.1e-20)|COAD - Colon adenocarcinoma(1;1.04e-11)|Colorectal(1;3.4e-11)|OV - Ovarian serous cystadenocarcinoma(1;1.01e-10)|BRCA - Breast invasive adenocarcinoma(1;0.00196)|Kidney(780;0.232)		TGTCCAGCTCCTCCAGGATGT	0.517													53	159					0	0	1	0	0
WWOX	51741	broad.mit.edu	37	16	78458947	78458947	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:78458947C>T	uc002ffk.2	+	7	911	c.786C>T	c.(784-786)TCC>TCT	p.S262S	WWOX_uc010vnk.1_Silent_p.S149S|WWOX_uc002ffl.2_Intron|WWOX_uc010che.2_Intron	NM_016373	NP_057457	Q9NZC7	WWOX_HUMAN	WW domain-containing oxidoreductase isoform 1	262	Interaction with MAPT (By similarity).|Mediates targeting to the mitochondria (By similarity).				apoptosis|negative regulation of Wnt receptor signaling pathway|steroid metabolic process|Wnt receptor signaling pathway	Golgi apparatus|mitochondrion|nucleus	coenzyme binding|oxidoreductase activity|protein dimerization activity				0		all_cancers(2;1.97e-181)|all_epithelial(2;3.85e-160)|all_lung(2;2.03e-39)|Lung NSC(2;7.16e-35)|Colorectal(2;6.96e-21)|all_hematologic(2;1.13e-16)|Melanoma(2;5.16e-06)|all_neural(2;8.84e-06)|Renal(2;5.26e-05)|Medulloblastoma(2;0.00498)|Breast(2;0.00631)|Lung SC(2;0.0261)|Prostate(104;0.167)		UCEC - Uterine corpus endometrioid carcinoma (2;0.012)|Epithelial(1;2.65e-39)|all cancers(1;3.26e-34)|STAD - Stomach adenocarcinoma(1;5.1e-20)|COAD - Colon adenocarcinoma(1;1.04e-11)|Colorectal(1;3.4e-11)|OV - Ovarian serous cystadenocarcinoma(1;1.01e-10)|BRCA - Breast invasive adenocarcinoma(1;0.00196)|Kidney(780;0.232)		CCTCAGAGTCCCATCGGTGGG	0.463													26	100					0	0	1	0	0
DYNLRB2	83657	broad.mit.edu	37	16	80583494	80583494	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:80583494G>A	uc002ffo.2	+	5	313	c.193G>A	c.(193-195)GAC>AAC	p.D65N	DYNLRB2_uc002ffp.2_RNA|DYNLRB2_uc002ffq.2_RNA	NM_130897	NP_570967	Q8TF09	DLRB2_HUMAN	dynein, light chain, roadblock-type 2	65					microtubule-based movement|transport	cytoplasmic dynein complex|microtubule	microtubule motor activity				0						TCCTCAGAACGACCTGACTTT	0.383													20	51					0	0	1	0	0
CDYL2	124359	broad.mit.edu	37	16	80667094	80667094	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:80667094G>A	uc002ffs.2	-	3	761	c.656C>T	c.(655-657)CCA>CTA	p.P219L		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	219						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CCTCTTCACTGGACTGTGCAG	0.483													35	109					0	0	1	0	0
CDYL2	124359	broad.mit.edu	37	16	80718764	80718764	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:80718764G>A	uc002ffs.2	-	2	392	c.287C>T	c.(286-288)CCT>CTT	p.P96L		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	96						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						GCTCTTTCCAGGATCTGAAGG	0.547													8	50					0	0	1	0	0
C16orf46	123775	broad.mit.edu	37	16	81095106	81095106	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81095106G>A	uc002fgc.3	-	4	1107	c.848C>T	c.(847-849)TCC>TTC	p.S283F	C16orf46_uc010chf.2_Missense_Mutation_p.S283F|C16orf46_uc010vno.1_Missense_Mutation_p.S10F	NM_152337	NP_689550	Q6P387	CP046_HUMAN	chromosome 16 open reading frame 46 isoform 2	283											0						GGCCGCTGGGGAAGGGGAGGA	0.577													44	186					0	0	1	0	0
C16orf46	123775	broad.mit.edu	37	16	81095509	81095509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81095509C>T	uc002fgc.3	-	4	704	c.445G>A	c.(445-447)GAC>AAC	p.D149N	C16orf46_uc010chf.2_Missense_Mutation_p.D149N|C16orf46_uc010vno.1_5'UTR	NM_152337	NP_689550	Q6P387	CP046_HUMAN	chromosome 16 open reading frame 46 isoform 2	149											0						AAGCAGATGTCGCTAATTGCC	0.557													55	229					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81134856	81134856	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81134856G>A	uc002fgh.1	-	45	7252	c.7252C>T	c.(7252-7254)CTG>TTG	p.L2418L	PKD1L2_uc002fgf.1_Silent_p.L218L|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2418	Extracellular (Potential).|Interaction with GNAS and GNAI1.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATTTTCATCAGCAGCAAATCT	0.522													15	39					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81167172	81167172	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81167172G>A	uc002fgh.1	-	35	5853	c.5853C>T	c.(5851-5853)ATC>ATT	p.I1951I	PKD1L2_uc002fgf.1_5'UTR|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1951	Helical; (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCCTACCCAGGATTTCTCTGA	0.527													7	37					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81181901	81181901	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81181901G>A	uc002fgh.1	-	29	4815	c.4815C>T	c.(4813-4815)TTC>TTT	p.F1605F	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1605	Helical; (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGTTGATGGGGAACATGAGGA	0.552													15	39					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81236166	81236166	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81236166G>A	uc002fgh.1	-	6	1082	c.1082C>T	c.(1081-1083)CCT>CTT	p.P361L	PKD1L2_uc002fgj.2_Missense_Mutation_p.P361L	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	361	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTGGCAGAGAGGGCCGGCTCC	0.567													12	88					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81242165	81242165	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81242165C>T	uc002fgh.1	-	4	691	c.691G>A	c.(691-693)GAG>AAG	p.E231K	PKD1L2_uc002fgj.2_Missense_Mutation_p.E231K	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	231	SUEL-type lectin.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AAGTAGGTCTCATCTGCTGCC	0.557													9	70					0	0	1	0	0
BCMO1	53630	broad.mit.edu	37	16	81319226	81319226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81319226C>T	uc002fgn.1	+	9	1507	c.1289C>T	c.(1288-1290)CCA>CTA	p.P430L	BCMO1_uc010vnp.1_Missense_Mutation_p.P361L	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	430					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						CAGTGGAGTCCAATCCCAACC	0.438													8	61					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81914540	81914540	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81914540C>T	uc002fgt.2	+	8	826	c.674C>T	c.(673-675)TCG>TTG	p.S225L	PLCG2_uc010chg.1_Missense_Mutation_p.S225L	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	225					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						AAAAAGGATTCGTCCGTGTTC	0.507													24	94					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81929530	81929530	+	Silent	SNP	G	A	A	rs149315555	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81929530G>A	uc002fgt.2	+	13	1343	c.1191G>A	c.(1189-1191)TCG>TCA	p.S397S	PLCG2_uc010chg.1_Silent_p.S397S	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	397	PI-PLC X-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						TTGTTACCTCGAGGTCAGTTG	0.542													56	67					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81969801	81969801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81969801C>T	uc002fgt.2	+	27	3022	c.2870C>T	c.(2869-2871)TCC>TTC	p.S957F		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	957	PI-PLC Y-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GAAATCCGCTCCTTTGTGGAG	0.483													6	56					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81969958	81969958	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:81969958G>A	uc002fgt.2	+	27	3179	c.3027G>A	c.(3025-3027)ATG>ATA	p.M1009I		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	1009	PI-PLC Y-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GTTCTCAGATGGTGGCACTCA	0.567													18	62					0	0	1	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033245	82033245	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:82033245C>T	uc002fgu.2	-	3	781	c.653G>A	c.(652-654)AGC>AAC	p.S218N		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	218					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						CTCAACCAGGCTCCTGGGGTC	0.557													51	141					0	0	1	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033447	82033447	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:82033447G>A	uc002fgu.2	-	3	579	c.451C>T	c.(451-453)CAC>TAC	p.H151Y		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	151					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						CGAGAGTAGTGATCAGGGTGG	0.507													40	64					0	0	1	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033513	82033513	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:82033513C>T	uc002fgu.2	-	3	513	c.385G>A	c.(385-387)GGA>AGA	p.G129R		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	129					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						ACTTGACCTCCAAAGATGACA	0.488													12	91					0	0	1	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033732	82033732	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:82033732C>T	uc002fgu.2	-	3	294	c.166G>A	c.(166-168)GGA>AGA	p.G56R		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	56					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						CGGATGTCTCCTTGTATAAAC	0.502													16	149					0	0	1	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033749	82033749	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:82033749C>T	uc002fgu.2	-	3	277	c.149G>A	c.(148-150)GGA>GAA	p.G50E		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	50					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						AAACTTGATTCCTTCTGGAAT	0.463													39	138					0	0	1	0	0
SDR42E1	93517	broad.mit.edu	37	16	82034431	82034431	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:82034431G>A	uc002fgu.2	-	2	161	c.33C>T	c.(31-33)GTC>GTT	p.V11V		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	11					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						CTGTAATGAGGACACTTTCCT	0.378													15	54					0	0	1	0	0
HSD17B2	3294	broad.mit.edu	37	16	82124521	82124521	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:82124521G>A	uc002fgv.2	+	4	851	c.679G>A	c.(679-681)GAA>AAA	p.E227K		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	227					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	GGCCCCAATGGAAAGGCTGGC	0.358													5	39					0	0	1	0	0
HSD17B2	3294	broad.mit.edu	37	16	82131753	82131753	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:82131753G>A	uc002fgv.2	+	5	1048	c.876G>A	c.(874-876)CAG>CAA	p.Q292Q		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	292					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	CTGAGGTACAGGAAGACTACG	0.537													25	79					0	0	1	0	0
HSD17B2	3294	broad.mit.edu	37	16	82131918	82131918	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:82131918G>A	uc002fgv.2	+	5	1213	c.1041G>A	c.(1039-1041)TGG>TGA	p.W347*		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	347					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	CTTACTTGTGGATCTGCCTTG	0.493													40	92					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83711968	83711968	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:83711968C>T	uc002fgx.2	+	10	1560	c.1440C>T	c.(1438-1440)GAC>GAT	p.D480D	CDH13_uc010vns.1_Silent_p.D527D|CDH13_uc010vnt.1_Silent_p.D226D|CDH13_uc010vnu.1_Silent_p.D441D	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	480	Cadherin 4.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TCTACCCAGACCCCATGATGG	0.612													9	55					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83817025	83817025	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:83817025C>T	uc002fgx.2	+	13	2202	c.2082C>T	c.(2080-2082)GCC>GCT	p.A694A	CDH13_uc010vns.1_Silent_p.A741A|CDH13_uc010vnt.1_Silent_p.A440A|CDH13_uc010vnu.1_Silent_p.A655A	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	694	Cadherin 5.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		CGGCAGGGGCCCTGCGCTTCA	0.517													7	68					0	0	1	0	0
MLYCD	23417	broad.mit.edu	37	16	83948952	83948952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:83948952C>T	uc002fgz.2	+	5	1360	c.1340C>T	c.(1339-1341)TCC>TTC	p.S447F		NM_012213	NP_036345	O95822	DCMC_HUMAN	malonyl-CoA decarboxylase precursor	447					acyl-CoA metabolic process|fatty acid biosynthetic process	mitochondrion|peroxisome	malonyl-CoA decarboxylase activity|methylmalonyl-CoA decarboxylase activity				0						ATCACCGGCTCCTGCGGCCTG	0.627													26	61					0	0	1	0	0
OSGIN1	29948	broad.mit.edu	37	16	83999347	83999347	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:83999347C>T	uc002fha.2	+	7	1801	c.1418C>T	c.(1417-1419)TCC>TTC	p.S473F	NECAB2_uc002fhd.2_5'Flank|OSGIN1_uc002fhb.2_Missense_Mutation_p.S390F|OSGIN1_uc002fhc.2_Missense_Mutation_p.S390F	NM_013370	NP_037502	Q9UJX0	OSGI1_HUMAN	oxidative stress induced growth inhibitor 1	473					cell differentiation|multicellular organismal development|negative regulation of cell growth		growth factor activity				0						TTTGGGGTCTCCCTGGTGCTG	0.647													7	61					0	0	1	0	0
NECAB2	54550	broad.mit.edu	37	16	84024144	84024144	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84024144C>T	uc002fhd.2	+	6	522	c.505C>T	c.(505-507)CTC>TTC	p.L169F	NECAB2_uc002fhe.2_Missense_Mutation_p.L86F	NM_019065	NP_061938	Q7Z6G3	NECA2_HUMAN	neuronal calcium-binding protein 2	169					antibiotic biosynthetic process	cytoplasm	calcium ion binding|oxidoreductase activity|protein binding			ovary(2)	2						GACCCGCTTCCTCCTGAAGGA	0.587													26	54					0	0	1	0	0
NECAB2	54550	broad.mit.edu	37	16	84024221	84024221	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84024221G>A	uc002fhd.2	+	6	599	c.582G>A	c.(580-582)CAG>CAA	p.Q194Q	NECAB2_uc002fhe.2_Silent_p.Q111Q	NM_019065	NP_061938	Q7Z6G3	NECA2_HUMAN	neuronal calcium-binding protein 2	194	Potential.				antibiotic biosynthetic process	cytoplasm	calcium ion binding|oxidoreductase activity|protein binding			ovary(2)	2						TCGAGGAACAGACCAGCCAGC	0.612													20	42					0	0	1	0	0
SLC38A8	146167	broad.mit.edu	37	16	84050127	84050127	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84050127G>A	uc002fhg.1	-	8	1159	c.1159C>T	c.(1159-1161)CCA>TCA	p.P387S		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	387	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0						GCCTCACCTGGGAAGATGAAG	0.567													15	41					0	0	1	0	0
SLC38A8	146167	broad.mit.edu	37	16	84050173	84050173	+	Silent	SNP	G	A	A	rs113073498	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84050173G>A	uc002fhg.1	-	8	1113	c.1113C>T	c.(1111-1113)ATC>ATT	p.I371I		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	371					amino acid transport|sodium ion transport	integral to membrane					0						TGATGCTGACGATCTCGCTGA	0.592													16	61					0	0	1	0	0
SLC38A8	146167	broad.mit.edu	37	16	84070370	84070370	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84070370G>A	uc002fhg.1	-	2	325	c.325C>T	c.(325-327)CTC>TTC	p.L109F		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	109	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0						AGGTTGAGGAGGAAGCAGGCC	0.632													10	37					0	0	1	0	0
SLC38A8	146167	broad.mit.edu	37	16	84075595	84075595	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84075595G>A	uc002fhg.1	-	1	168	c.168C>T	c.(166-168)GTC>GTT	p.V56V		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	56	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0						GGAAGGCAGGGACCACTCCGC	0.622													52	111					0	0	1	0	0
MBTPS1	8720	broad.mit.edu	37	16	84089651	84089651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84089651G>A	uc002fhi.2	-	22	3423	c.2921C>T	c.(2920-2922)CCC>CTC	p.P974L	MBTPS1_uc002fhh.2_Missense_Mutation_p.P478L	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	974	Lumenal (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						AGGGGACAAGGGCCTCACTTG	0.502													23	57					0	0	1	0	0
MBTPS1	8720	broad.mit.edu	37	16	84118695	84118695	+	Silent	SNP	G	A	A	rs141095084	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84118695G>A	uc002fhi.2	-	10	1681	c.1179C>T	c.(1177-1179)ACC>ACT	p.T393T		NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	393	Serine protease.|Lumenal (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						CAGCACCATAGGTGACAATGT	0.567											OREG0023982	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	63					0	0	1	0	0
LRRC50	123872	broad.mit.edu	37	16	84188309	84188309	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84188309G>A	uc002fhl.3	+	4	661	c.480G>A	c.(478-480)ATG>ATA	p.M160I	LRRC50_uc010chi.1_RNA	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	160	LRR 3.				axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						TCTTGCAAATGAACTTGCTCC	0.463									Kartagener_syndrome				35	80					0	0	1	0	0
TAF1C	9013	broad.mit.edu	37	16	84213612	84213612	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84213612G>A	uc002fhn.2	-	13	1867	c.1639C>T	c.(1639-1641)CCT>TCT	p.P547S	TAF1C_uc002fhm.2_Missense_Mutation_p.P453S|TAF1C_uc010vnx.1_Missense_Mutation_p.P521S|TAF1C_uc010vny.1_Missense_Mutation_p.P138S|TAF1C_uc010vnz.1_Missense_Mutation_p.P215S|TAF1C_uc002fho.2_Missense_Mutation_p.P70S|TAF1C_uc010voa.1_Missense_Mutation_p.P215S|TAF1C_uc002fhp.1_Intron	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	547					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						TCCAGCAGAGGAAATGCAGGG	0.652													16	25					0	0	1	0	0
ADAD2	161931	broad.mit.edu	37	16	84224922	84224922	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84224922C>T	uc002fhr.2	+	1	200	c.86C>T	c.(85-87)CCC>CTC	p.P29L	ADAD2_uc002fhq.2_Missense_Mutation_p.P29L	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	29					RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						AGCCCCCAGCCCCGCCCCTGG	0.622													7	9					0	0	1	0	0
ADAD2	161931	broad.mit.edu	37	16	84228059	84228059	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84228059C>T	uc002fhr.2	+	2	544	c.430C>T	c.(430-432)CCC>TCC	p.P144S	ADAD2_uc002fhq.2_Missense_Mutation_p.P216S|uc002fhs.1_Missense_Mutation_p.G102R	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	144	DRBM.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						TCCCTGCTTCCCCTTCTCGGT	0.642													7	11					0	0	1	0	0
KCNG4	93107	broad.mit.edu	37	16	84256408	84256408	+	Silent	SNP	C	T	T	rs113623603		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84256408C>T	uc010voc.1	-	3	1096	c.975G>A	c.(973-975)GGG>GGA	p.G325G		NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	325						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GGTAGGAGCTCCCGCTCGGCC	0.672													4	16					0	0	1	0	0
KCNG4	93107	broad.mit.edu	37	16	84270552	84270552	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84270552C>T	uc010voc.1	-	2	661	c.540G>A	c.(538-540)AGG>AGA	p.R180R	KCNG4_uc002fhu.1_Silent_p.R180R	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	180						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GTACGTCCTCCCTGTGCAGCT	0.677													14	29					0	0	1	0	0
KCNG4	93107	broad.mit.edu	37	16	84270630	84270630	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84270630C>T	uc010voc.1	-	2	583	c.462G>A	c.(460-462)GAG>GAA	p.E154E	KCNG4_uc002fhu.1_Silent_p.E154E	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	154						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						CCAGGTGGGCCTCCTCGATGC	0.652													18	40					0	0	1	0	0
KCNG4	93107	broad.mit.edu	37	16	84270886	84270886	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84270886C>T	uc010voc.1	-	2	327	c.206G>A	c.(205-207)AGG>AAG	p.R69K	KCNG4_uc002fhu.1_Missense_Mutation_p.R69K	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	69	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GAGGAGATACCTCCTGCCCCC	0.622													13	80					0	0	1	0	0
ATP2C2	9914	broad.mit.edu	37	16	84438821	84438821	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84438821G>A	uc002fhx.2	+	3	387	c.298G>A	c.(298-300)GAA>AAA	p.E100K	ATP2C2_uc010chj.2_Missense_Mutation_p.E100K|ATP2C2_uc002fhy.2_Missense_Mutation_p.E117K|ATP2C2_uc002fhz.2_5'Flank	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	100	Cytoplasmic (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						TGACAACAGCGAACCTGTGTG	0.547													5	42					0	0	1	0	0
ATP2C2	9914	broad.mit.edu	37	16	84456240	84456240	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84456240C>T	uc002fhx.2	+	9	869	c.780C>T	c.(778-780)GTC>GTT	p.V260V	ATP2C2_uc010chj.2_Silent_p.V260V|ATP2C2_uc002fhy.2_Silent_p.V277V|ATP2C2_uc002fhz.2_Silent_p.V109V	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	260	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						CACAGGGGGTCGTGATTGGAA	0.567													47	245					0	0	1	0	0
ATP2C2	9914	broad.mit.edu	37	16	84473122	84473122	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84473122C>T	uc002fhx.2	+	13	1290	c.1201C>T	c.(1201-1203)CGT>TGT	p.R401C	ATP2C2_uc010chj.2_Missense_Mutation_p.R401C|ATP2C2_uc002fhy.2_Missense_Mutation_p.R418C|ATP2C2_uc002fhz.2_Missense_Mutation_p.R250C	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	401	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						AGATGGGCTTCGTGCCGAGGT	0.493													49	108					0	0	1	0	0
ATP2C2	9914	broad.mit.edu	37	16	84474551	84474551	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84474551G>A	uc002fhx.2	+	14	1387	c.1298G>A	c.(1297-1299)GGA>GAA	p.G433E	ATP2C2_uc010chj.2_Missense_Mutation_p.G433E|ATP2C2_uc002fhy.2_Missense_Mutation_p.G450E|ATP2C2_uc002fhz.2_Missense_Mutation_p.G282E	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	433	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GTCTCAGTGGGAAAGTTAGTG	0.493													7	16					0	0	1	0	0
KIAA1609	57707	broad.mit.edu	37	16	84520383	84520383	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84520383G>A	uc002fib.2	-	5	919	c.812C>T	c.(811-813)TCG>TTG	p.S271L	KIAA1609_uc010vod.1_Missense_Mutation_p.S244L|KIAA1609_uc002fic.2_RNA	NM_020947	NP_065998	Q6P9B6	K1609_HUMAN	hypothetical protein LOC57707	271	TLD.						protein binding			ovary(2)	2						GAGCTCAGACGAAAAGAGCAG	0.597													18	37					0	0	1	0	0
USP10	9100	broad.mit.edu	37	16	84778340	84778340	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84778340C>T	uc002fii.2	+	4	395	c.253C>T	c.(253-255)CCT>TCT	p.P85S	USP10_uc010voe.1_Missense_Mutation_p.P89S|USP10_uc010vof.1_Intron|USP10_uc002fij.2_5'UTR	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	85	Interaction with p53/TP53.				DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						CACACTGAACCCTCAGGCCCC	0.463													36	58					0	0	1	0	0
USP10	9100	broad.mit.edu	37	16	84796646	84796646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84796646C>T	uc002fii.2	+	9	1748	c.1606C>T	c.(1606-1608)CAT>TAT	p.H536Y	USP10_uc010voe.1_Missense_Mutation_p.H540Y|USP10_uc010vof.1_Missense_Mutation_p.H98Y|USP10_uc002fij.2_Missense_Mutation_p.H62Y	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	536					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						AAATGGACTTCATGAGGAAAT	0.408													38	137					0	0	1	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84872160	84872160	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:84872160C>T	uc010voh.1	+	2	286	c.59C>T	c.(58-60)TCC>TTC	p.S20F	CRISPLD2_uc010vog.1_Missense_Mutation_p.S20F|CRISPLD2_uc002fio.2_Missense_Mutation_p.S20F|CRISPLD2_uc002fik.3_Missense_Mutation_p.S20F|CRISPLD2_uc002fil.2_Missense_Mutation_p.S20F|CRISPLD2_uc002fim.2_Missense_Mutation_p.S20F|CRISPLD2_uc002fin.3_Missense_Mutation_p.S20F	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	20						extracellular region|transport vesicle					0						GTCTGCGGATCCCAAGGCTAC	0.617													30	86					0	0	1	0	0
COX4I1	1327	broad.mit.edu	37	16	85840354	85840354	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:85840354C>T	uc002fje.2	+	5	548	c.384C>T	c.(382-384)CCC>CCT	p.P128P	COX4I1_uc002fjf.2_3'UTR|COX4I1_uc002fjg.1_3'UTR|COX4I1_uc010vom.1_Silent_p.P95P	NM_001861	NP_001852	P13073	COX41_HUMAN	cytochrome c oxidase subunit IV isoform 1	128					respiratory electron transport chain	mitochondrial inner membrane|nucleus	cytochrome-c oxidase activity|protein binding			lung(1)	1		Renal(780;0.228)				TGTACGGCCCCCTCCCGCAAA	0.542													22	64					0	0	1	0	0
IRF8	3394	broad.mit.edu	37	16	85952165	85952165	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:85952165G>A	uc002fjh.2	+	7	801	c.744G>A	c.(742-744)GAG>GAA	p.E248E	IRF8_uc010chp.2_Intron	NM_002163	NP_002154	Q02556	IRF8_HUMAN	interferon regulatory factor 8	248					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(2)|ovary(1)	3		Prostate(104;0.0771)				AGGGCCTGGAGCTGGTGCGCT	0.731													18	34					0	0	1	0	0
MTHFSD	64779	broad.mit.edu	37	16	86575416	86575416	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:86575416G>A	uc002fjn.2	-	7	619	c.568C>T	c.(568-570)CCT>TCT	p.P190S	MTHFSD_uc010voo.1_Missense_Mutation_p.P170S|MTHFSD_uc002fjo.2_Missense_Mutation_p.P27S|MTHFSD_uc002fjm.2_Missense_Mutation_p.P189S|MTHFSD_uc010vop.1_Missense_Mutation_p.P27S|MTHFSD_uc010voq.1_Missense_Mutation_p.P189S|MTHFSD_uc010vor.1_Missense_Mutation_p.P190S|MTHFSD_uc002fjp.2_Missense_Mutation_p.P170S	NM_001159377	NP_001152849	Q2M296	MTHSD_HUMAN	methenyltetrahydrofolate synthetase domain	190					folic acid-containing compound biosynthetic process		5-formyltetrahydrofolate cyclo-ligase activity|ATP binding|RNA binding				0						AGCTCTTCAGGGATGTCCACG	0.592													6	34					0	0	1	0	0
FOXC2	2303	broad.mit.edu	37	16	86601587	86601587	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:86601587G>A	uc002fjq.2	+	1	731	c.646G>A	c.(646-648)GAG>AAG	p.E216K		NM_005251	NP_005242	Q99958	FOXC2_HUMAN	forkhead box C2	216					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|embryonic viscerocranium morphogenesis|insulin receptor signaling pathway|lymphangiogenesis|metanephros development|negative regulation of transcription from RNA polymerase II promoter|neural crest cell fate commitment|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of cell adhesion mediated by integrin|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vascular wound healing|regulation of blood vessel size|regulation of organ growth|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|ureteric bud development|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding|transcription regulatory region DNA binding				0						GATCAAGAGCGAGGCGGCGTC	0.756									Late-onset_Hereditary_Lymphedema				8	12					0	0	1	0	0
FOXL1	2300	broad.mit.edu	37	16	86612425	86612425	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:86612425C>T	uc002fjr.2	+	1	311	c.96C>T	c.(94-96)TTC>TTT	p.F32F		NM_005250	NP_005241	Q12952	FOXL1_HUMAN	forkhead box L1	32					brain development|camera-type eye development|cartilage development|embryo development|forelimb morphogenesis|heart development|organ morphogenesis|pattern specification process|proteoglycan biosynthetic process|regulation of sequence-specific DNA binding transcription factor activity|regulation of Wnt receptor signaling pathway|visceral mesoderm-endoderm interaction involved in midgut development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1						CTCTGGCCTTCGCCCCCGCGG	0.692													13	58					0	0	1	0	0
FBXO31	79791	broad.mit.edu	37	16	87377322	87377322	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:87377322G>A	uc002fjw.2	-	4	583	c.539C>T	c.(538-540)CCC>CTC	p.P180L	FBXO31_uc010vot.1_Missense_Mutation_p.P8L|FBXO31_uc002fjv.2_Missense_Mutation_p.P72L	NM_024735	NP_079011	Q5XUX0	FBX31_HUMAN	F-box protein 31	180					cell cycle|cyclin catabolic process|mitotic cell cycle G1/S transition DNA damage checkpoint|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	SCF ubiquitin ligase complex	cyclin binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0272)		ATCGACGTGGGGGTCATGGGG	0.592													10	62					0	0	1	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87445462	87445462	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:87445462G>A	uc002fjz.1	-	12	2481	c.2454C>T	c.(2452-2454)TCC>TCT	p.S818S	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Silent_p.S594S	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	818					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		AGGTGAACACGGACGGACCGG	0.652													3	11					0	0	1	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87448052	87448052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:87448052G>A	uc002fjz.1	-	10	1187	c.1160C>T	c.(1159-1161)CCC>CTC	p.P387L	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Missense_Mutation_p.P163L	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	387					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		CGACTGCACGGGCCCGACGTG	0.672													13	43					0	0	1	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87457444	87457444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:87457444G>A	uc002fjz.1	-	4	428	c.401C>T	c.(400-402)TCC>TTC	p.S134F	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_5'UTR	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	134					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		CACTTCAGAGGAAGATTTGGT	0.343													31	61					0	0	1	0	0
JPH3	57338	broad.mit.edu	37	16	87636987	87636987	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:87636987G>A	uc002fkd.2	+	1	489	c.235G>A	c.(235-237)GGG>AGG	p.G79R	JPH3_uc010vou.1_Intron	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	79	Gly-rich.|Cytoplasmic (Potential).|MORN 3.				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		GGAGAGCAAGGGGAAGTGGGT	0.682													9	7					0	0	1	0	0
JPH3	57338	broad.mit.edu	37	16	87678058	87678058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:87678058C>T	uc002fkd.2	+	2	831	c.577C>T	c.(577-579)CGC>TGC	p.R193C	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	193	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		GGCCGTGTCCCGCGGGGGCTT	0.687													32	62					0	0	1	0	0
JPH3	57338	broad.mit.edu	37	16	87678484	87678484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:87678484G>A	uc002fkd.2	+	2	1257	c.1003G>A	c.(1003-1005)GAG>AAG	p.E335K	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	335	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		CACCAAGGAGGAGGGCAAGTA	0.662													15	52					0	0	1	0	0
CA5A	763	broad.mit.edu	37	16	87936081	87936081	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:87936081C>T	uc002fkn.1	-	4	561	c.505G>A	c.(505-507)GAA>AAA	p.E169K		NM_001739	NP_001730	P35218	CAH5A_HUMAN	carbonic anhydrase VA, mitochondrial precursor	169					one-carbon metabolic process	mitochondrial matrix	carbonate dehydratase activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0513)		ACGACAGCTTCCTTGTAATTT	0.393													26	49					0	0	1	0	0
BANP	54971	broad.mit.edu	37	16	88066771	88066771	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88066771C>T	uc002fkr.2	+	9	1317	c.1093C>T	c.(1093-1095)CCG>TCG	p.P365S	BANP_uc002fkp.2_Missense_Mutation_p.P335S|BANP_uc002fkq.2_Missense_Mutation_p.P335S|BANP_uc010vow.1_Missense_Mutation_p.P373S|BANP_uc002fks.3_Missense_Mutation_p.P334S|BANP_uc002fko.1_Missense_Mutation_p.P271S|BANP_uc010vov.1_Missense_Mutation_p.P340S	NM_079837	NP_524576	Q8N9N5	BANP_HUMAN	BTG3 associated nuclear protein isoform b	366	DNA-binding (By similarity).|Gln-rich.				cell cycle|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0				BRCA - Breast invasive adenocarcinoma(80;0.00551)		ACAGCCGCAGCCGCAGGCCCT	0.627													7	27					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	88620276	88620276	+	Silent	SNP	G	A	A	rs140536808		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88620276G>A	uc010vox.1	-	2	354	c.354C>T	c.(352-354)CTC>CTT	p.L118L						RecName: Full=Putative uncharacterized protein C16orf85;																		GGGATCTGGGGAGGAAGGAGT	0.582													5	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	88620309	88620309	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88620309G>A	uc010vox.1	-	2	321	c.321C>T	c.(319-321)GCC>GCT	p.A107A						RecName: Full=Putative uncharacterized protein C16orf85;																		GTTCCTGCAGGGCTGCCGTCT	0.632													6	51					0	0	1	0	0
ZC3H18	124245	broad.mit.edu	37	16	88695234	88695234	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88695234C>T	uc002fky.2	+	16	2738	c.2538C>T	c.(2536-2538)GCC>GCT	p.A846A	ZC3H18_uc010voz.1_Silent_p.A870A|ZC3H18_uc010chw.2_RNA|ZC3H18_uc002fkz.2_Silent_p.A116A	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	846						nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		CTCCTCCAGCCAAGCGGCCCA	0.617													31	111					0	0	1	0	0
MVD	4597	broad.mit.edu	37	16	88723893	88723893	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88723893G>A	uc002flg.1	-	4	361	c.354C>T	c.(352-354)TTC>TTT	p.F118F	MVD_uc002flf.1_5'Flank	NM_002461	NP_002452	P53602	MVD1_HUMAN	diphosphomevalonate decarboxylase	118					cholesterol biosynthetic process|positive regulation of cell proliferation	cytosol	ATP binding|diphosphomevalonate decarboxylase activity|Hsp70 protein binding|kinase activity|protein homodimerization activity				0				BRCA - Breast invasive adenocarcinoma(80;0.0478)		CAGCCGTGGGGAAGTTGTTCA	0.701													6	13					0	0	1	0	0
CDT1	81620	broad.mit.edu	37	16	88873061	88873061	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88873061C>T	uc002flu.2	+	7	1155	c.1101C>T	c.(1099-1101)GCC>GCT	p.A367A		NM_030928	NP_112190	Q9H211	CDT1_HUMAN	chromatin licensing and DNA replication factor	367					DNA replication|DNA replication checkpoint|M/G1 transition of mitotic cell cycle|regulation of DNA-dependent DNA replication initiation|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0476)		TGGCCCGGGCCCGCAACCTGA	0.667													5	17					0	0	1	0	0
TRAPPC2L	51693	broad.mit.edu	37	16	88925146	88925146	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88925146C>T	uc002fmc.2	+	2	206	c.153C>T	c.(151-153)GTC>GTT	p.V51V	GALNS_uc002fly.3_5'Flank|GALNS_uc010cid.2_5'Flank|GALNS_uc002flz.3_5'Flank|GALNS_uc002fma.2_5'Flank|TRAPPC2L_uc010cie.2_RNA|TRAPPC2L_uc002fmd.3_Silent_p.V51V|TRAPPC2L_uc002fme.3_Silent_p.V51V|TRAPPC2L_uc002fmf.2_5'Flank|uc002fmg.2_5'Flank	NM_016209	NP_057293	Q9UL33	TPC2L_HUMAN	trafficking protein particle complex 2-like	51					ER to Golgi vesicle-mediated transport	endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm					0				BRCA - Breast invasive adenocarcinoma(80;0.0477)		AGGCCCTGGTCGACCAGAGGG	0.577													13	52					0	0	1	0	0
CBFA2T3	863	broad.mit.edu	37	16	88945680	88945680	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88945680C>T	uc002fmm.1	-	11	1846	c.1660G>A	c.(1660-1662)GAG>AAG	p.E554K	CBFA2T3_uc002fml.1_Missense_Mutation_p.E468K|CBFA2T3_uc002fmk.1_Missense_Mutation_p.E53K	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	554					cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.E554K(1)		large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		GGCCCTACCTCGCTGGAGTCC	0.697			T	RUNX1	AML								16	41					0	0	1	0	0
CBFA2T3	863	broad.mit.edu	37	16	88958337	88958337	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88958337C>T	uc002fmm.1	-	5	850	c.664G>A	c.(664-666)GAG>AAG	p.E222K	CBFA2T3_uc002fml.1_Missense_Mutation_p.E136K|CBFA2T3_uc010cif.1_Missense_Mutation_p.E161K|CBFA2T3_uc002fmn.1_Missense_Mutation_p.E197K	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	222	TAFH.|Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		TTGGTGGCCTCCTGAAGCTTG	0.587			T	RUNX1	AML								10	30					0	0	1	0	0
CBFA2T3	863	broad.mit.edu	37	16	88967948	88967948	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:88967948C>T	uc002fmm.1	-	2	454	c.268G>A	c.(268-270)GGG>AGG	p.G90R	CBFA2T3_uc002fml.1_Missense_Mutation_p.G29R|CBFA2T3_uc010cif.1_Missense_Mutation_p.G29R|CBFA2T3_uc002fmn.1_Missense_Mutation_p.G90R	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	90	Mediates localization to the nucleus (By similarity).|Pro-rich.|Mediates interaction with PDE7A (in isoform 2).|Required for nucleolar targeting (in isoform 1).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		CGTGTGGCCCCCTGGGATGCG	0.687			T	RUNX1	AML								11	32					0	0	1	0	0
CDH15	1013	broad.mit.edu	37	16	89251666	89251666	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89251666G>A	uc002fmt.2	+	5	665	c.588G>A	c.(586-588)CAG>CAA	p.Q196Q	CDH15_uc010cij.1_Silent_p.Q196Q	NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	196	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		TCCTGCAGCAGGGCAGCCCCG	0.667													3	7					0	0	1	0	0
CDH15	1013	broad.mit.edu	37	16	89256747	89256747	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89256747C>T	uc002fmt.2	+	8	1152	c.1075C>T	c.(1075-1077)CAG>TAG	p.Q359*		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	359	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		TGAGCGGGGCCAGGCCAAGGT	0.647													9	20					0	0	1	0	0
CDH15	1013	broad.mit.edu	37	16	89256788	89256788	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89256788C>T	uc002fmt.2	+	8	1193	c.1116C>T	c.(1114-1116)CCC>CCT	p.P372P		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	372	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		CCAACGAGCCCCCCGTGTTCC	0.677													5	20					0	0	1	0	0
CDH15	1013	broad.mit.edu	37	16	89259965	89259965	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89259965G>A	uc002fmt.2	+	12	2020	c.1943G>A	c.(1942-1944)CGA>CAA	p.R648Q		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	648	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		GACGACCTTCGAGACAATGTC	0.672													12	15					0	0	1	0	0
CDH15	1013	broad.mit.edu	37	16	89261523	89261523	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89261523C>T	uc002fmt.2	+	14	2482	c.2405C>T	c.(2404-2406)CCT>CTT	p.P802L		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	802	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		GGTCTTTCTCCTGGGGCACTG	0.687													16	21					0	0	1	0	0
ZNF778	197320	broad.mit.edu	37	16	89293398	89293398	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89293398C>T	uc002fmv.2	+	6	957	c.618C>T	c.(616-618)TTC>TTT	p.F206F	ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Silent_p.F164F|ZNF778_uc010vpg.1_5'UTR	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	206					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		GGGAAGTGTTCCTTAATCAGT	0.502													44	155					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89346601	89346601	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89346601G>A	uc002fmx.1	-	9	6810	c.6349C>T	c.(6349-6351)CCG>TCG	p.P2117S	ANKRD11_uc002fmy.1_Missense_Mutation_p.P2117S|ANKRD11_uc002fnc.1_Missense_Mutation_p.P2117S|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.P2074S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2117	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		CAGGGCACCGGCTCCACCTGG	0.697													3	16					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89346952	89346952	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89346952G>A	uc002fmx.1	-	9	6459	c.5998C>T	c.(5998-6000)CTC>TTC	p.L2000F	ANKRD11_uc002fmy.1_Missense_Mutation_p.L2000F|ANKRD11_uc002fnc.1_Missense_Mutation_p.L2000F|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.L1957F	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2000	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GCAGAGTGGAGGGGGTCCGCG	0.701													11	30					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89346988	89346988	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89346988G>A	uc002fmx.1	-	9	6423	c.5962C>T	c.(5962-5964)CCC>TCC	p.P1988S	ANKRD11_uc002fmy.1_Missense_Mutation_p.P1988S|ANKRD11_uc002fnc.1_Missense_Mutation_p.P1988S|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.P1945S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1988	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GGGGACTCGGGGAATCTCTGT	0.692													5	57					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89347138	89347138	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89347138G>A	uc002fmx.1	-	9	6273	c.5812C>T	c.(5812-5814)CCC>TCC	p.P1938S	ANKRD11_uc002fmy.1_Missense_Mutation_p.P1938S|ANKRD11_uc002fnc.1_Missense_Mutation_p.P1938S|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.P1895S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1938	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GCGCTGAAGGGACCCTCGTCC	0.697													20	47					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89347331	89347331	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89347331G>A	uc002fmx.1	-	9	6080	c.5619C>T	c.(5617-5619)GTC>GTT	p.V1873V	ANKRD11_uc002fmy.1_Silent_p.V1873V|ANKRD11_uc002fnc.1_Silent_p.V1873V|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Silent_p.V1830V	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1873	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GGGTGACAGTGACAACGGCAG	0.612													21	60					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89348928	89348928	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89348928G>A	uc002fmx.1	-	9	4483	c.4022C>T	c.(4021-4023)CCT>CTT	p.P1341L	ANKRD11_uc002fmy.1_Missense_Mutation_p.P1341L|ANKRD11_uc002fnc.1_Missense_Mutation_p.P1341L|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.P1298L	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1341	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		CAGCTTCTCAGGGAGGCAGGC	0.592													24	52					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89351410	89351410	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89351410G>A	uc002fmx.1	-	9	2001	c.1540C>T	c.(1540-1542)CTG>TTG	p.L514L	ANKRD11_uc002fmy.1_Silent_p.L514L|ANKRD11_uc002fnc.1_Silent_p.L514L|ANKRD11_uc002fnb.1_Silent_p.L471L	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	514	Ser-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GAGCTGAACAGGGAGGGGTCC	0.652													19	47					0	0	1	0	0
SPG7	6687	broad.mit.edu	37	16	89619494	89619495	+	Silent	DNP	CC	TT	TT	rs1050404		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89619494_89619495CC>TT	uc002fnj.2	+	14	1908_1909	c.1887_1888CC>TT	c.(1885-1890)GCCCTG>GCTTTG	p.629_630AL>AL	SPG7_uc002fnk.1_RNA|SPG7_uc002fnl.2_Silent_p.38_39AL>AL	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	629_630	Mitochondrial matrix (Potential).				cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		TGTGCATGGCCCTGGGAGGACG	0.619													8	26					0	0	1	0	0
CPNE7	27132	broad.mit.edu	37	16	89650480	89650480	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89650480C>T	uc002fnp.2	+	6	832	c.702C>T	c.(700-702)CTC>CTT	p.L234L	CPNE7_uc002fnq.2_Silent_p.L159L	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	234					lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		ACGTGGAGCTCTCCTTCCGGG	0.687													9	44					0	0	1	0	0
CPNE7	27132	broad.mit.edu	37	16	89650505	89650505	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89650505G>A	uc002fnp.2	+	6	857	c.727G>A	c.(727-729)GAC>AAC	p.D243N	CPNE7_uc002fnq.2_Missense_Mutation_p.D168N	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	243	C2 2.				lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		GAAGCTGGACGACAAGGTGAG	0.677													6	48					0	0	1	0	0
CPNE7	27132	broad.mit.edu	37	16	89651233	89651233	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89651233G>A	uc002fnp.2	+	7	914	c.784G>A	c.(784-786)GAC>AAC	p.D262N	CPNE7_uc002fnq.2_Missense_Mutation_p.D187N	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	262	C2 2.				lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		GGTCAACGACGACCAGGGCTT	0.657													6	28					0	0	1	0	0
ZNF276	92822	broad.mit.edu	37	16	89789189	89789189	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89789189C>T	uc002fos.3	+	2	553	c.456C>T	c.(454-456)TCC>TCT	p.S152S	C16orf7_uc002fom.1_5'Flank|ZNF276_uc010ciq.2_5'UTR|ZNF276_uc002fop.2_Silent_p.S77S|ZNF276_uc002foq.3_Silent_p.S77S|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_5'UTR|ZNF276_uc010cis.2_5'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_5'Flank|ZNF276_uc010cit.1_5'Flank	NM_001113525	NP_001106997	Q8N554	ZN276_HUMAN	zinc finger protein 276 isoform a	152	ZAD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		TTCTCAAGTCCTTCCTGCAGA	0.607													40	79					0	0	1	0	0
ZNF276	92822	broad.mit.edu	37	16	89790008	89790008	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:89790008C>T	uc002fos.3	+	4	994	c.897C>T	c.(895-897)ACC>ACT	p.T299T	C16orf7_uc002fom.1_5'Flank|ZNF276_uc010ciq.2_Missense_Mutation_p.P96L|ZNF276_uc002fop.2_Missense_Mutation_p.P218L|ZNF276_uc002foq.3_Silent_p.T224T|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_Missense_Mutation_p.P96L|ZNF276_uc010cis.2_Silent_p.T58T|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_Silent_p.T137T|ZNF276_uc010cit.1_Silent_p.T58T	NM_001113525	NP_001106997	Q8N554	ZN276_HUMAN	zinc finger protein 276 isoform a	299					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		GGGCTGAGACCAAGACCCTGC	0.697													17	38					0	0	1	0	0
TUBB3	10381	broad.mit.edu	37	16	90001895	90001895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr16:90001895C>T	uc002fph.1	+	4	1101	c.1036C>T	c.(1036-1038)CCC>TCC	p.P346S	TUBB3_uc002fpf.2_Missense_Mutation_p.P693S|TUBB3_uc010ciz.1_Missense_Mutation_p.P274S|TUBB3_uc002fpg.1_Missense_Mutation_p.P200S|TUBB3_uc002fpi.1_Missense_Mutation_p.P274S|TUBB3_uc002fpj.1_Missense_Mutation_p.P274S|TUBB3_uc010cjb.1_Missense_Mutation_p.P200S|TUBB3_uc002fpk.1_Missense_Mutation_p.P200S	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	346					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		GGAGTGGATCCCCAACAACGT	0.612													51	177					0	0	1	0	0
MYO1C	4641	broad.mit.edu	37	17	1371776	1371776	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:1371776G>A	uc002fsp.2	-	26	2845	c.2625C>T	c.(2623-2625)GCC>GCT	p.A875A	MYO1C_uc002fsn.2_Silent_p.A856A|MYO1C_uc002fso.2_Silent_p.A840A|MYO1C_uc010vqj.1_Silent_p.A840A	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	875					mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CACTAGCCACGGCCTTCTGCT	0.587													19	26					0	0	1	0	0
RILP	83547	broad.mit.edu	37	17	1549859	1549859	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:1549859G>A	uc002ftd.2	-	8	1377	c.1083C>T	c.(1081-1083)AGC>AGT	p.S361S	SCARF1_uc002fsy.1_5'Flank|SCARF1_uc002fsz.1_5'Flank|SCARF1_uc002fta.1_5'Flank|SCARF1_uc010cjv.1_5'Flank	NM_031430	NP_113618	Q96NA2	RILP_HUMAN	Rab interacting lysosomal protein	361					endosome to lysosome transport|protein transport	late endosome membrane|lysosomal membrane|phagocytic vesicle membrane	Rab GTPase binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TGGGTGCAGGGCTGCTGGTCT	0.592													58	61					0	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1558805	1558805	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:1558805G>A	uc002fte.2	-	37	5940	c.5826C>T	c.(5824-5826)GCC>GCT	p.A1942A		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1942	Involved in interaction with pre-mRNA 5' splice site.					catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TCACATGTAGGGCACGCAGAA	0.498													41	57					0	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1562025	1562025	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:1562025G>A	uc002fte.2	-	33	5285	c.5171C>T	c.(5170-5172)CCT>CTT	p.P1724L		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1724	Involved in interaction with pre-mRNA 5' splice site.					catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TTGTATGAGAGGCTTGCTGCC	0.498													25	26					0	0	1	0	0
SERPINF2	5345	broad.mit.edu	37	17	1650748	1650748	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:1650748C>T	uc002ftk.1	+	7	734	c.657C>T	c.(655-657)TTC>TTT	p.F219F	SERPINF2_uc010vqr.1_Silent_p.F155F	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor	219					acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	TTCAGGAATTCCTCTCTGGGC	0.587													10	13					0	0	1	0	0
SERPINF2	5345	broad.mit.edu	37	17	1655922	1655922	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:1655922C>T	uc002ftk.1	+	9	978	c.901C>T	c.(901-903)CTT>TTT	p.L301F	SERPINF2_uc010vqr.1_Missense_Mutation_p.L237F	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor	301					acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	CTTTGTGGTCCTTGTACCCAC	0.547													6	79					0	0	1	0	0
SERPINF1	5176	broad.mit.edu	37	17	1674335	1674335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:1674335G>A	uc002ftl.2	+	4	453	c.296G>A	c.(295-297)CGA>CAA	p.R99Q	SERPINF1_uc010cjw.2_Intron	NM_002615	NP_002606	P36955	PEDF_HUMAN	serine (or cysteine) proteinase inhibitor, clade	99					cell proliferation|negative regulation of angiogenesis|positive regulation of neurogenesis|regulation of proteolysis	extracellular space|melanosome	serine-type endopeptidase inhibitor activity			ovary(1)	1						GCGGAGCAGCGAACAGAATCC	0.542													56	52					0	0	1	0	0
HIC1	3090	broad.mit.edu	37	17	1961664	1961664	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:1961664G>A	uc010cjy.2	+	2	1737	c.1737G>A	c.(1735-1737)ACG>ACA	p.T579T	HIC1_uc002fty.3_Silent_p.T560T|HIC1_uc002ftz.3_Silent_p.T560T	NM_001098202	NP_001091672	Q14526	HIC1_HUMAN	hypermethylated in cancer 1 isoform 2	579	C2H2-type 4.				multicellular organismal development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)	1				READ - Rectum adenocarcinoma(1115;0.236)		ACCGCCTCACGGAGCACATGC	0.657													8	10					0	0	1	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2808585	2808585	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:2808585G>A	uc010ckd.2	+	3	178	c.88G>A	c.(88-90)GAG>AAG	p.E30K	RAP1GAP2_uc010cke.2_Missense_Mutation_p.E30K	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	30					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						CAGGAAGCAGGAGCTGGCCAA	0.592													15	17					0	0	1	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2865964	2865964	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:2865964G>A	uc010ckd.2	+	5	292	c.202G>A	c.(202-204)GGG>AGG	p.G68R	RAP1GAP2_uc010cke.2_Intron	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	68					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						GTTTCTATAGGGGATCAAGCT	0.567													3	12					0	0	1	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2898716	2898716	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:2898716C>T	uc010ckd.2	+	13	1090	c.1000C>T	c.(1000-1002)CAC>TAC	p.H334Y	RAP1GAP2_uc010cke.2_Missense_Mutation_p.H319Y	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	334	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						GATCATGTTTCACGTTTCCAC	0.587													62	55					0	0	1	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2908728	2908728	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:2908728C>T	uc010ckd.2	+	15	1356	c.1266C>T	c.(1264-1266)TTC>TTT	p.F422F	RAP1GAP2_uc010cke.2_Silent_p.F407F	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	422	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						CCCCCGTTTTCCAGAAGGTAG	0.572													24	146					0	0	1	0	0
OR1D4	8385	broad.mit.edu	37	17	2966227	2966227	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:2966227G>A	uc010vra.1	-	1	729	c.729C>T	c.(727-729)ATC>ATT	p.I243I		NM_003552	NP_003543			olfactory receptor, family 1, subfamily D,												0						GCATTTGAAGGATGGTTCTGA	0.493													10	26					0	0	1	0	0
OR1D4	8385	broad.mit.edu	37	17	2966524	2966524	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:2966524G>A	uc010vra.1	-	1	432	c.432C>T	c.(430-432)ATC>ATT	p.I144I		NM_003552	NP_003543			olfactory receptor, family 1, subfamily D,												0						GGGGGCAGCAGGTGGCCACAT	0.582													22	37					0	0	1	0	0
OR1D2	4991	broad.mit.edu	37	17	2995949	2995949	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:2995949G>A	uc010vrb.1	-	1	342	c.342C>T	c.(340-342)ATC>ATT	p.I114I		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	114	Helical; Name=3; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TCACAGCCAGGATGAGGTTGT	0.542													52	65					0	0	1	0	0
OR1G1	8390	broad.mit.edu	37	17	3030699	3030699	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3030699G>A	uc002fvc.1	-	1	147	c.147C>T	c.(145-147)ATC>ATT	p.I49I		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTCAGTAATGATGACTAGAA	0.522													25	41					0	0	1	0	0
OR3A2	4995	broad.mit.edu	37	17	3181574	3181574	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3181574G>A	uc002fvg.2	-	1	695	c.656C>T	c.(655-657)CCT>CTT	p.P219L		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						GAGAACCAAAGGTGTGCCTGC	0.557													11	53					0	0	1	0	0
OR3A4	390756	broad.mit.edu	37	17	3213625	3213625	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3213625G>A	uc002fvi.2	+	1	87	c.21G>A	c.(19-21)GGG>GGA	p.G7G		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						GGAACTCAGGGAATGATTCAG	0.517													26	41					0	0	1	0	0
OR3A4	390756	broad.mit.edu	37	17	3213706	3213706	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3213706C>T	uc002fvi.2	+	1	168	c.102C>T	c.(100-102)TTC>TTT	p.F34F		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						TTGTCATCTTCCTTCTTGCTT	0.527													24	39					0	0	1	0	0
OR3A4	390756	broad.mit.edu	37	17	3214646	3214646	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3214646C>T	uc002fvi.2	+	1	1108	c.1042C>T	c.(1042-1044)CTA>TTA	p.L348L		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						TAGCCATGGCCTATGACCGCT	0.567													22	35					0	0	1	0	0
SPATA22	84690	broad.mit.edu	37	17	3346535	3346535	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3346535G>A	uc002fvm.2	-	8	1070	c.833C>T	c.(832-834)CCA>CTA	p.P278L	SPATA22_uc010vrg.1_Missense_Mutation_p.P262L|SPATA22_uc010vrf.1_Intron|SPATA22_uc002fvn.2_Missense_Mutation_p.P278L|SPATA22_uc002fvo.2_Missense_Mutation_p.P278L|SPATA22_uc002fvp.2_Missense_Mutation_p.P278L|SPATA22_uc010ckf.2_Missense_Mutation_p.P235L	NM_032598	NP_115987	Q8NHS9	SPT22_HUMAN	spermatogenesis associated 22	278											0						CGAATAATATGGGCCAGGTGT	0.353													14	25					0	0	1	0	0
TRPV3	162514	broad.mit.edu	37	17	3430213	3430213	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3430213G>A	uc002fvt.1	-	12	1834	c.1512C>T	c.(1510-1512)GCC>GCT	p.A504A	TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Silent_p.A488A|TRPV3_uc010vri.1_Silent_p.A459A|TRPV3_uc010vrj.1_Silent_p.A488A|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Silent_p.A488A|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Silent_p.A504A|TRPV3_uc002fvu.2_Silent_p.A504A|TRPV3_uc010vrn.1_Silent_p.A86A	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	504	Helical; (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	GCAGGAAGATGGCAATGCCCT	0.567													9	6					0	0	1	0	0
TRPV3	162514	broad.mit.edu	37	17	3458126	3458126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3458126C>T	uc002fvt.1	-	2	341	c.19G>A	c.(19-21)GAG>AAG	p.E7K	TRPV3_uc010vrj.1_5'UTR|TRPV3_uc010vrk.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.E7K|TRPV3_uc002fvu.2_Missense_Mutation_p.E7K	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	7	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	GGCACCATCTCCTTGGGGTGG	0.622													13	24					0	0	1	0	0
P2RX5	5026	broad.mit.edu	37	17	3594945	3594945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3594945G>A	uc002fwi.2	-	2	565	c.281C>T	c.(280-282)CCA>CTA	p.P94L	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Missense_Mutation_p.P94L|P2RX5_uc010vrx.1_Missense_Mutation_p.P58L|P2RX5_uc002fwj.2_Missense_Mutation_p.P94L|P2RX5_uc002fwk.2_Missense_Mutation_p.P94L|P2RX5_uc002fwl.2_Missense_Mutation_p.P94L|P2RX5_uc002fwm.1_Missense_Mutation_p.P94L	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	94	Extracellular (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						GACCTGGGCTGGAATGACGTA	0.617													22	37					0	0	1	0	0
P2RX5	5026	broad.mit.edu	37	17	3595085	3595085	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3595085C>T	uc002fwi.2	-	2	425	c.141G>A	c.(139-141)TGG>TGA	p.W47*	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Nonsense_Mutation_p.W47*|P2RX5_uc010vrx.1_Nonsense_Mutation_p.W11*|P2RX5_uc002fwj.2_Nonsense_Mutation_p.W47*|P2RX5_uc002fwk.2_Nonsense_Mutation_p.W47*|P2RX5_uc002fwl.2_Nonsense_Mutation_p.W47*|P2RX5_uc002fwm.1_Nonsense_Mutation_p.W47*	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	47	Helical; Name=1; (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						TCAGGAACACCCATCTGTGGG	0.597													30	77					0	0	1	0	0
GSG2	83903	broad.mit.edu	37	17	3628755	3628755	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3628755C>T	uc002fwp.2	+	1	1559	c.1526C>T	c.(1525-1527)GCC>GTC	p.A509V	ITGAE_uc002fwo.3_Intron|ITGAE_uc002fwn.3_5'Flank	NM_031965	NP_114171	Q8TF76	HASP_HUMAN	haspin	509	Protein kinase.				cell cycle|chromatin modification|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity				0						ACACCCGTAGCCATAAAAATC	0.443													32	33					0	0	1	0	0
GSG2	83903	broad.mit.edu	37	17	3628883	3628883	+	Missense_Mutation	SNP	C	T	T	rs150287837		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3628883C>T	uc002fwp.2	+	1	1687	c.1654C>T	c.(1654-1656)CGC>TGC	p.R552C	ITGAE_uc002fwo.3_Intron|ITGAE_uc002fwn.3_5'Flank	NM_031965	NP_114171	Q8TF76	HASP_HUMAN	haspin	552	Protein kinase.				cell cycle|chromatin modification|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity				0						AGTGTGCAACCGCACAGAAGG	0.478													33	34					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3638194	3638194	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3638194G>A	uc002fwo.3	-	21	2671	c.2572C>T	c.(2572-2574)CTA>TTA	p.L858L		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	858	Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		GAGTTAGTTAGGTTAATGTTC	0.463													23	167					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3654979	3654979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3654979C>T	uc002fwo.3	-	15	1957	c.1858G>A	c.(1858-1860)GGA>AGA	p.G620R		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	620	FG-GAP 6.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		TCCCAGTGTCCATTGTAGATA	0.597													18	33					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3655083	3655083	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3655083C>T	uc002fwo.3	-	15	1853	c.1754G>A	c.(1753-1755)GGG>GAG	p.G585E		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	585	FG-GAP 6.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		ACTGAGATCCCCCATAGCCGC	0.557													25	50					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3655168	3655168	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3655168C>T	uc002fwo.3	-	15	1768	c.1669G>A	c.(1669-1671)GAT>AAT	p.D557N		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	557	FG-GAP 5.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		AAAGAACCATCCTGTAAAGCA	0.597													25	29					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3656589	3656589	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3656589C>T	uc002fwo.3	-	14	1762	c.1663G>A	c.(1663-1665)GAG>AAG	p.E555K		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	555	FG-GAP 5.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		CCCACCTGCTCGCTGAGACGG	0.572													6	12					0	0	1	0	0
CAMKK1	84254	broad.mit.edu	37	17	3772812	3772812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3772812G>A	uc002fwt.2	-	14	1404	c.1310C>T	c.(1309-1311)TCA>TTA	p.S437L	CAMKK1_uc002fwu.2_Missense_Mutation_p.S437L|CAMKK1_uc002fwv.2_Missense_Mutation_p.S475L	NM_172206	NP_757343	Q8N5S9	KKCC1_HUMAN	calcium/calmodulin-dependent protein kinase 1	437	Autoinhibitory domain (By similarity).				synaptic transmission	cytosol|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1				LUAD - Lung adenocarcinoma(2;2.11e-05)|Lung(3;0.0176)		GAGCCTGACTGAGTTCTTAAC	0.622													18	56					0	0	1	0	0
ATP2A3	489	broad.mit.edu	37	17	3831551	3831551	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3831551C>T	uc002fxb.1	-	21	3202	c.3051G>A	c.(3049-3051)TGG>TGA	p.W1017*	ATP2A3_uc010ckn.1_Intron|ATP2A3_uc002fwx.1_Nonsense_Mutation_p.W1017*|ATP2A3_uc002fwy.1_Nonsense_Mutation_p.W1017*|ATP2A3_uc002fwz.1_Nonsense_Mutation_p.W1017*|ATP2A3_uc002fxa.1_Nonsense_Mutation_p.W1017*|ATP2A3_uc002fxc.1_Intron|ATP2A3_uc002fxd.1_Intron	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	1017	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		GGTCTGGGGTCCAAGAGGTGG	0.612													16	32					0	0	1	0	0
ATP2A3	489	broad.mit.edu	37	17	3844784	3844784	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3844784G>A	uc002fxb.1	-	13	1861	c.1710C>T	c.(1708-1710)CCC>CCT	p.P570P	ATP2A3_uc002fwx.1_Silent_p.P570P|ATP2A3_uc002fwy.1_Silent_p.P570P|ATP2A3_uc002fwz.1_Silent_p.P570P|ATP2A3_uc002fxa.1_Silent_p.P570P|ATP2A3_uc002fxc.1_Silent_p.P570P|ATP2A3_uc002fxd.1_Silent_p.P570P	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	570	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		CCTTCCTTGGGGGCGCGTCCC	0.647													28	77					0	0	1	0	0
ATP2A3	489	broad.mit.edu	37	17	3850757	3850757	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:3850757G>A	uc002fxb.1	-	8	1174	c.1023C>T	c.(1021-1023)ACC>ACT	p.T341T	ATP2A3_uc002fwx.1_Silent_p.T341T|ATP2A3_uc002fwy.1_Silent_p.T341T|ATP2A3_uc002fwz.1_Silent_p.T341T|ATP2A3_uc002fxa.1_Silent_p.T341T|ATP2A3_uc002fxc.1_Silent_p.T341T|ATP2A3_uc002fxd.1_Silent_p.T341T	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	341	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		TGCAGCCCAGGGTCTCCACGG	0.647													33	43					0	0	1	0	0
SPNS3	201305	broad.mit.edu	37	17	4337325	4337325	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4337325C>T	uc002fxt.2	+	1	107	c.63C>T	c.(61-63)TCC>TCT	p.S21S	SPNS3_uc002fxu.2_5'UTR	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	21					lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						AGGGCCAGTCCCCAGGGCCAG	0.701													11	21					0	0	1	0	0
SPNS3	201305	broad.mit.edu	37	17	4348328	4348328	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4348328C>T	uc002fxt.2	+	3	311	c.267C>T	c.(265-267)GTC>GTT	p.V89V	SPNS3_uc002fxu.2_Intron	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	89	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						CTCCTTCAGTCTTCGTTAGCT	0.612													67	160					0	0	1	0	0
SPNS3	201305	broad.mit.edu	37	17	4356353	4356353	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4356353G>A	uc002fxt.2	+	8	1010	c.966G>A	c.(964-966)GGG>GGA	p.G322G	SPNS3_uc002fxu.2_Silent_p.G195G|SPNS3_uc002fxv.2_Silent_p.G6G	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	322	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						GCGTCATTGGGGTCATCTTGG	0.587													36	58					0	0	1	0	0
SPNS3	201305	broad.mit.edu	37	17	4391133	4391133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4391133G>A	uc002fxt.2	+	12	1527	c.1483G>A	c.(1483-1485)GAC>AAC	p.D495N	SPNS3_uc002fxu.2_Missense_Mutation_p.D368N|SPNS3_uc002fxv.2_Missense_Mutation_p.D146N|uc002fxw.1_5'Flank	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	495					lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						GGACAGCAACGACCTGGAGAG	0.622													59	68					0	0	1	0	0
SPNS2	124976	broad.mit.edu	37	17	4437103	4437103	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4437103G>A	uc002fxx.2	+	9	1513	c.1299G>A	c.(1297-1299)GAG>GAA	p.E433E	SPNS2_uc002fxy.2_5'Flank	NM_001124758	NP_001118230	Q8IVW8	SPNS2_HUMAN	spinster homolog 2	433	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane					0						TCGTCGGGGAGACGCTGCTGT	0.592													8	46					0	0	1	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4445806	4445806	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4445806G>A	uc002fyb.3	-	22	3102	c.3040C>T	c.(3040-3042)CCC>TCC	p.P1014S	MYBBP1A_uc002fxz.3_Missense_Mutation_p.P1014S|MYBBP1A_uc002fya.3_5'Flank|MYBBP1A_uc010vsa.1_Missense_Mutation_p.P56S	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	1014					nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						ACCAGGATGGGGAGCAGGCTC	0.637													32	40					0	0	1	0	0
SMTNL2	342527	broad.mit.edu	37	17	4500472	4500472	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4500472G>A	uc002fyf.1	+	7	1180	c.1113G>A	c.(1111-1113)GTG>GTA	p.V371V	SMTNL2_uc002fye.2_Silent_p.V227V	NM_001114974	NP_001108446	Q2TAL5	SMTL2_HUMAN	smoothelin-like 2 isoform 1	371	CH.										0				READ - Rectum adenocarcinoma(115;0.0325)		TGCAGCACGTGGACCTGCAGA	0.612													19	26					0	0	1	0	0
ALOX15	246	broad.mit.edu	37	17	4536769	4536769	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4536769G>A	uc002fyh.2	-	9	1202	c.1188C>T	c.(1186-1188)ACC>ACT	p.T396T	ALOX15_uc010vsd.1_Silent_p.T357T|ALOX15_uc010vse.1_Silent_p.T418T	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	396	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	TAATTTCCAGGGTGTATCGCA	0.517													32	27					0	0	1	0	0
PELP1	27043	broad.mit.edu	37	17	4577868	4577868	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4577868G>A	uc002fyi.3	-	13	1745	c.1519C>T	c.(1519-1521)CCG>TCG	p.P507S	PELP1_uc010vsf.1_Missense_Mutation_p.P360S	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	507					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						TGGCTTGGCGGGGCCATAGCT	0.642													7	26					0	0	1	0	0
ZMYND15	84225	broad.mit.edu	37	17	4645066	4645066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4645066C>T	uc002fyt.2	+	3	821	c.782C>T	c.(781-783)CCC>CTC	p.P261L	CXCL16_uc002fyr.3_5'Flank|CXCL16_uc002fys.3_5'Flank|ZMYND15_uc002fyv.2_Missense_Mutation_p.P261L|ZMYND15_uc002fyu.2_Missense_Mutation_p.P261L	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	261							zinc ion binding				0						TCTGGGGATCCCCGAAAGCCC	0.622													19	20					0	0	1	0	0
ZMYND15	84225	broad.mit.edu	37	17	4648002	4648002	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4648002G>A	uc002fyt.2	+	10	1688	c.1649G>A	c.(1648-1650)AGG>AAG	p.R550K	ZMYND15_uc002fyv.2_Missense_Mutation_p.R589K|ZMYND15_uc002fyu.2_Missense_Mutation_p.R589K	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	550							zinc ion binding				0						GGGGGCCGCAGGGACCTGCAG	0.617													29	40					0	0	1	0	0
ZMYND15	84225	broad.mit.edu	37	17	4649113	4649113	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4649113G>A	uc002fyt.2	+	13	1980	c.1941_splice	c.e13-1	p.W647_splice	ZMYND15_uc002fyv.2_Splice_Site_p.W686_splice|ZMYND15_uc002fyu.2_Splice_Site_p.W694_splice	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2								zinc ion binding				0						CGCCCCCGCAGGTACTGCAAT	0.602													8	11					0	0	1	0	0
VMO1	284013	broad.mit.edu	37	17	4688690	4688690	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4688690C>T	uc002fyx.2	-	3	658	c.576G>A	c.(574-576)CTG>CTA	p.L192L	VMO1_uc010vsh.1_3'UTR|VMO1_uc010vsi.1_3'UTR|VMO1_uc002fyy.2_3'UTR	NM_182566	NP_872372	Q7Z5L0	VMO1_HUMAN	vitelline membrane outer layer 1 isoform 1	192					vitelline membrane formation	extracellular region				ovary(1)	1						GCGCGTCGTTCAGCGCAGTGT	0.642													19	21					0	0	1	0	0
SLC25A11	8402	broad.mit.edu	37	17	4841131	4841131	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4841131G>A	uc002fzo.1	-	8	963	c.850C>T	c.(850-852)CCG>TCG	p.P284S	SLC25A11_uc002fzp.1_Missense_Mutation_p.P280S|RNF167_uc002fzq.2_5'Flank|RNF167_uc002fzr.2_5'Flank|RNF167_uc002fzs.2_5'Flank|RNF167_uc002fzt.2_5'Flank|RNF167_uc002fzu.2_5'Flank|RNF167_uc002fzv.2_5'Flank	NM_003562	NP_003553	Q02978	M2OM_HUMAN	solute carrier family 25 member 11 isoform 1	284	Solcar 3.|Helical; Name=6; (Potential).				gluconeogenesis	integral to plasma membrane|mitochondrial inner membrane	oxoglutarate:malate antiporter activity				0						GCATAGTACGGCGTGAAGCCC	0.592													21	62					0	0	1	0	0
SPAG7	9552	broad.mit.edu	37	17	4864089	4864089	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4864089G>A	uc002gae.2	-	2	178	c.145C>T	c.(145-147)CGT>TGT	p.R49C	SPAG7_uc002gad.2_5'UTR|SPAG7_uc002gaf.2_Missense_Mutation_p.R49C	NM_004890	NP_004881	O75391	SPAG7_HUMAN	sperm associated antigen 7	49	R3H.|Nuclear localization signal (Potential).					nucleus	nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)	2						ACCCTTTTACGAAACTCCACT	0.468													27	57					0	0	1	0	0
SPAG7	9552	broad.mit.edu	37	17	4864138	4864138	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4864138G>A	uc002gae.2	-	2	129	c.96C>T	c.(94-96)GCC>GCT	p.A32A	SPAG7_uc002gad.2_5'UTR|SPAG7_uc002gaf.2_Silent_p.A32A	NM_004890	NP_004881	O75391	SPAG7_HUMAN	sperm associated antigen 7	32						nucleus	nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)	2						TCTTCAGGCGGGCGGCCTGTT	0.502													26	62					0	0	1	0	0
KIF1C	10749	broad.mit.edu	37	17	4923295	4923295	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4923295G>A	uc002gan.1	+	19	1997	c.1671G>A	c.(1669-1671)GTG>GTA	p.V557V		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	557	FHA.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						ATTCAGTGGTGGTCACTCTGG	0.527													8	5					0	0	1	0	0
ZFP3	124961	broad.mit.edu	37	17	4995352	4995352	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:4995352C>T	uc002gaq.2	+	2	678	c.553C>T	c.(553-555)CGA>TGA	p.R185*		NM_153018	NP_694563	Q96NJ6	ZFP3_HUMAN	zinc finger protein-3	185	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAAGCCTTCGACGGCACCT	0.398													49	50					0	0	1	0	0
USP6	9098	broad.mit.edu	37	17	5036231	5036231	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:5036231G>A	uc002gau.1	+	13	2452	c.222G>A	c.(220-222)ACG>ACA	p.T74T	USP6_uc002gav.1_Silent_p.T74T|USP6_uc010ckz.1_5'UTR|USP6_uc002gaw.2_Silent_p.T135T|uc002gay.1_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	74					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						TGACACGAACGAGCAAGTGGA	0.527			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								19	179					0	0	1	0	0
USP6	9098	broad.mit.edu	37	17	5042699	5042699	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:5042699C>T	uc002gau.1	+	22	3458	c.1228C>T	c.(1228-1230)CGT>TGT	p.R410C	USP6_uc002gav.1_Missense_Mutation_p.R410C|USP6_uc010ckz.1_Missense_Mutation_p.R93C|uc002gbd.2_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	410					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						ATGGGCATCTCGTTTTTCCAC	0.657			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								17	28					0	0	1	0	0
USP6	9098	broad.mit.edu	37	17	5042876	5042876	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:5042876C>T	uc002gau.1	+	22	3635	c.1405C>T	c.(1405-1407)CCC>TCC	p.P469S	USP6_uc002gav.1_Missense_Mutation_p.P469S|USP6_uc010ckz.1_Missense_Mutation_p.P152S|uc002gbd.2_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	469					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CCCTTGGTTCCCCCATTATGA	0.612			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								24	28					0	0	1	0	0
RABEP1	9135	broad.mit.edu	37	17	5241338	5241338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:5241338C>T	uc002gbm.3	+	5	777	c.553C>T	c.(553-555)CGG>TGG	p.R185W	RABEP1_uc010clc.1_Missense_Mutation_p.R185W|RABEP1_uc010cld.1_Missense_Mutation_p.R142W|RABEP1_uc010vsw.1_Missense_Mutation_p.R142W|RABEP1_uc002gbl.3_Missense_Mutation_p.R185W|RABEP1_uc002gbk.2_Missense_Mutation_p.R185W	NM_004703	NP_004694	Q15276	RABE1_HUMAN	rabaptin, RAB GTPase binding effector protein 1	185	Potential.				apoptosis|cellular membrane fusion|endocytosis|protein transport	centrosome|early endosome|endocytic vesicle|recycling endosome	growth factor activity|GTPase activator activity|protein homodimerization activity			large_intestine(1)|ovary(1)	2						TGAGAAACTTCGGTCCGTTGT	0.398													48	63					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5436224	5436224	+	Missense_Mutation	SNP	G	A	A	rs149973177		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:5436224G>A	uc002gci.2	-	11	3769	c.3214C>T	c.(3214-3216)CCT>TCT	p.P1072S	NLRP1_uc002gcg.1_Missense_Mutation_p.P1076S|NLRP1_uc002gck.2_Missense_Mutation_p.P1072S|NLRP1_uc002gcj.2_Missense_Mutation_p.P1042S|NLRP1_uc002gcl.2_Missense_Mutation_p.P1042S|NLRP1_uc002gch.3_Missense_Mutation_p.P1072S|NLRP1_uc010clh.2_Missense_Mutation_p.P1072S	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1072					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GTCCCCAAAGGCTTCGTATGC	0.577													7	49					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5436228	5436228	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:5436228C>T	uc002gci.2	-	11	3765	c.3210G>A	c.(3208-3210)ACG>ACA	p.T1070T	NLRP1_uc002gcg.1_Silent_p.T1074T|NLRP1_uc002gck.2_Silent_p.T1070T|NLRP1_uc002gcj.2_Silent_p.T1040T|NLRP1_uc002gcl.2_Silent_p.T1040T|NLRP1_uc002gch.3_Silent_p.T1070T|NLRP1_uc010clh.2_Silent_p.T1070T	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1070					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CCAAAGGCTTCGTATGCAGGT	0.577													23	34					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5485338	5485338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:5485338C>T	uc002gci.2	-	3	1048	c.493G>A	c.(493-495)GAC>AAC	p.D165N	NLRP1_uc002gcg.1_Missense_Mutation_p.D165N|NLRP1_uc002gck.2_Missense_Mutation_p.D165N|NLRP1_uc002gcj.2_Missense_Mutation_p.D165N|NLRP1_uc002gcl.2_Missense_Mutation_p.D165N|NLRP1_uc002gch.3_Missense_Mutation_p.D165N|NLRP1_uc010clh.2_Missense_Mutation_p.D165N	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	165					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GACTCATGGTCTGGGGAGCTT	0.512													8	18					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5486048	5486048	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:5486048C>T	uc002gci.2	-	2	945	c.390G>A	c.(388-390)CAG>CAA	p.Q130Q	NLRP1_uc002gcg.1_Silent_p.Q130Q|NLRP1_uc002gck.2_Silent_p.Q130Q|NLRP1_uc002gcj.2_Silent_p.Q130Q|NLRP1_uc002gcl.2_Silent_p.Q130Q|NLRP1_uc002gch.3_Silent_p.Q130Q|NLRP1_uc010clh.2_Silent_p.Q130Q	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	130					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TCTCTGAGCCCTGGGTGCACC	0.632													12	10					0	0	1	0	0
WSCD1	23302	broad.mit.edu	37	17	6023659	6023659	+	Missense_Mutation	SNP	C	T	T	rs148765035		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6023659C>T	uc010cli.2	+	9	1785	c.1406C>T	c.(1405-1407)TCG>TTG	p.S469L	WSCD1_uc002gcn.2_Missense_Mutation_p.S469L|WSCD1_uc002gco.2_Missense_Mutation_p.S469L|WSCD1_uc010clj.2_Missense_Mutation_p.S160L	NM_015253	NP_056068	Q658N2	WSCD1_HUMAN	WSC domain containing 1	469						integral to membrane	sulfotransferase activity				0						AGCTACGCCTCGTGGTGGTCC	0.672													55	80					0	0	1	0	0
PITPNM3	83394	broad.mit.edu	37	17	6386953	6386953	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6386953G>A	uc002gdd.3	-	6	622	c.471C>T	c.(469-471)TTC>TTT	p.F157F	PITPNM3_uc010cln.2_Silent_p.F121F|PITPNM3_uc002gdc.3_5'Flank	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	157					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		GCACGGAGCTGAAGGTGTGGA	0.617													16	30					0	0	1	0	0
KIAA0753	9851	broad.mit.edu	37	17	6498355	6498355	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6498355G>A	uc002gde.3	-	16	2736	c.2377C>T	c.(2377-2379)CGT>TGT	p.R793C	KIAA0753_uc010vtd.1_Missense_Mutation_p.R249C|KIAA0753_uc010clo.2_Missense_Mutation_p.R494C|KIAA0753_uc010vte.1_Missense_Mutation_p.R494C	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	793						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		TATCTTTGACGAACAGACTCC	0.284													31	28					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6590866	6590866	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6590866G>A	uc002gdj.2	-	11	1645	c.1557C>T	c.(1555-1557)CAC>CAT	p.H519H	SLC13A5_uc010vtf.1_Intron|SLC13A5_uc010clq.2_Silent_p.H476H|SLC13A5_uc002gdk.2_Silent_p.H502H	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	519						integral to membrane	citrate transmembrane transporter activity				0						CAACCTTGAGGTGCCCATAGG	0.498													36	66					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6594233	6594233	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6594233C>T	uc002gdj.2	-	10	1390	c.1302G>A	c.(1300-1302)GGG>GGA	p.G434G	SLC13A5_uc010vtf.1_Silent_p.G434G|SLC13A5_uc010clq.2_Silent_p.G391G|SLC13A5_uc002gdk.2_Silent_p.G417G	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	434						integral to membrane	citrate transmembrane transporter activity				0						CCATCTGCTTCCCCATCCACA	0.468													41	50					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6594260	6594260	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6594260C>T	uc002gdj.2	-	10	1364	c.1276_splice	c.e10-1	p.A426_splice	SLC13A5_uc010vtf.1_Splice_Site_p.A426_splice|SLC13A5_uc010clq.2_Splice_Site_p.A383_splice|SLC13A5_uc002gdk.2_Splice_Site_p.A409_splice	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a							integral to membrane	citrate transmembrane transporter activity				0						GCCCCGAGGCCTGGGAAGCAC	0.393													35	36					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6599215	6599215	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6599215C>T	uc002gdj.2	-	7	973	c.885G>A	c.(883-885)GAG>GAA	p.E295E	SLC13A5_uc010vtf.1_Silent_p.E295E|SLC13A5_uc010clq.2_Silent_p.E252E|SLC13A5_uc002gdk.2_Silent_p.E278E|SLC13A5_uc002gdl.1_Silent_p.E277E	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	295						integral to membrane	citrate transmembrane transporter activity				0						GGGCAGCCTTCTCGTTTTTCT	0.562													60	94					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6606396	6606396	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6606396C>T	uc002gdj.2	-	5	697	c.609G>A	c.(607-609)AGG>AGA	p.R203R	SLC13A5_uc010vtf.1_Silent_p.R203R|SLC13A5_uc010clq.2_Silent_p.R160R|SLC13A5_uc002gdk.2_Silent_p.R186R|SLC13A5_uc002gdl.1_Silent_p.R185R	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	203						integral to membrane	citrate transmembrane transporter activity				0						CCTTACACAACCTCTTCCGCT	0.627													32	52					0	0	1	0	0
XAF1	54739	broad.mit.edu	37	17	6663021	6663021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6663021C>T	uc002gdn.2	+	3	451	c.209C>T	c.(208-210)TCG>TTG	p.S70L	XAF1_uc010clr.1_Missense_Mutation_p.S70L|XAF1_uc002gdm.1_Missense_Mutation_p.S10L|XAF1_uc002gdo.2_Intron|XAF1_uc002gdp.2_Missense_Mutation_p.R48C|XAF1_uc002gdq.2_Intron|XAF1_uc002gdr.2_Intron	NM_017523	NP_059993	Q6GPH4	XAF1_HUMAN	XIAP associated factor 1 isoform 1	70	TRAF-type.				apoptosis|type I interferon-mediated signaling pathway	mitochondrion|nucleus	zinc ion binding				0						CAGAAGTCCTCGCTGGAGTTT	0.448													17	62					0	0	1	0	0
TEKT1	83659	broad.mit.edu	37	17	6716194	6716194	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6716194C>T	uc002gdt.2	-	6	918	c.808G>A	c.(808-810)GAT>AAT	p.D270N	TEKT1_uc010vth.1_Missense_Mutation_p.D124N	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	270	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				TCCTTTGTATCCTTCAGCCCA	0.537													49	75					0	0	1	0	0
TEKT1	83659	broad.mit.edu	37	17	6719205	6719205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6719205C>T	uc002gdt.2	-	4	543	c.433G>A	c.(433-435)GGC>AGC	p.G145S	TEKT1_uc010vth.1_5'UTR	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	145	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				GCCATAATGCCCTGGATGATC	0.557													26	35					0	0	1	0	0
BCL6B	255877	broad.mit.edu	37	17	6930397	6930397	+	Silent	SNP	G	A	A	rs117980493	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6930397G>A	uc002geg.2	+	8	1371	c.1314G>A	c.(1312-1314)AAG>AAA	p.K438K	BCL6B_uc010clt.1_Silent_p.K439K	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	438						nucleus	zinc ion binding			skin(1)	1						CCGGAGAGAAGCCTTACCACG	0.632													15	43					0	0	1	0	0
SLC16A13	201232	broad.mit.edu	37	17	6940077	6940077	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6940077C>T	uc002geh.2	+	2	539	c.231C>T	c.(229-231)TTC>TTT	p.F77F		NM_201566	NP_963860	Q7RTY0	MOT13_HUMAN	monocarboxylate transporter 13	77	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)|skin(1)	2						GCACGAAGTTCGGGCCCAGGC	0.632													15	112					0	0	1	0	0
SLC16A13	201232	broad.mit.edu	37	17	6941598	6941598	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6941598C>T	uc002geh.2	+	3	779	c.471C>T	c.(469-471)CCC>CCT	p.P157P		NM_201566	NP_963860	Q7RTY0	MOT13_HUMAN	monocarboxylate transporter 13	157	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)|skin(1)	2						CATTTGCCCCCTTTTTCCAGT	0.652													30	30					0	0	1	0	0
SLC16A11	162515	broad.mit.edu	37	17	6945458	6945458	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6945458G>A	uc002gei.1	-	3	1381	c.1043C>T	c.(1042-1044)GCC>GTC	p.A348V		NM_153357	NP_699188	Q8NCK7	MOT11_HUMAN	solute carrier family 16, member 11	348	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)	1						CAGCCCATAGGCCACAGCCGC	0.716													7	5					0	0	1	0	0
CLEC10A	10462	broad.mit.edu	37	17	6979059	6979059	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:6979059C>T	uc002gek.2	-	7	969	c.666G>A	c.(664-666)AGG>AGA	p.R222R	CLEC10A_uc002gej.2_Silent_p.R198R|CLEC10A_uc002gel.2_Silent_p.R195R|CLEC10A_uc010clv.1_Silent_p.R195R	NM_182906	NP_878910	Q8IUN9	CLC10_HUMAN	C-type lectin, superfamily member 14 isoform 1	222	C-type lectin.|Extracellular (Potential).				endocytosis|innate immune response	integral to membrane|plasma membrane	sugar binding				0						CCTGCTCCTCCCTGGAGTTGA	0.433													28	37					0	0	1	0	0
ASGR2	433	broad.mit.edu	37	17	7012127	7012127	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7012127G>A	uc002gep.3	-	3	470	c.205C>T	c.(205-207)CTG>TTG	p.L69L	ASGR2_uc010vtk.1_5'Flank|ASGR2_uc002gem.1_Silent_p.L14L|ASGR2_uc002gen.1_Silent_p.L50L|ASGR2_uc002geo.1_Silent_p.L69L|ASGR2_uc002ger.3_Silent_p.L69L|ASGR2_uc002geq.3_Silent_p.L50L|ASGR2_uc010clw.2_Silent_p.L50L|ASGR2_uc010vtl.1_RNA	NM_001181	NP_001172	P07307	ASGR2_HUMAN	asialoglycoprotein receptor 2 isoform a	69	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway|endocytosis	focal adhesion|integral to membrane|nucleolus	asialoglycoprotein receptor activity|protein binding|sugar binding			ovary(1)	1					Antihemophilic Factor(DB00025)	ACCAGCAGCAGGATGTTGAAG	0.632													21	19					0	0	1	0	0
DLG4	1742	broad.mit.edu	37	17	7100082	7100082	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7100082G>A	uc002get.3	-	11	2407	c.1206C>T	c.(1204-1206)ATC>ATT	p.I402I	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Silent_p.I299I|DLG4_uc010cly.2_Silent_p.I356I|DLG4_uc010vto.1_Silent_p.I399I	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	359	PDZ 3.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						TCACCGACAGGATCTGGTCCC	0.667													5	4					0	0	1	0	0
SLC2A4	6517	broad.mit.edu	37	17	7186949	7186949	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7186949C>T	uc002gfp.2	+	3	508	c.308C>T	c.(307-309)TCT>TTT	p.S103F	SLC2A4_uc002gfo.2_Missense_Mutation_p.S103F|SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	103	Cytoplasmic (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						GGTATCATCTCTCAGTGGCTT	0.617													26	45					0	0	1	0	0
ACAP1	9744	broad.mit.edu	37	17	7245290	7245290	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7245290C>T	uc002ggd.2	+	3	341	c.135C>T	c.(133-135)CTC>CTT	p.L45L		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	45	BAR.|Required for formation of endosomal tubules when overexpressed with PIP5K1C.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						GCACTGGTCTCCTGGAAAGTG	0.612													30	51					0	0	1	0	0
NLGN2	57555	broad.mit.edu	37	17	7320910	7320910	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7320910C>T	uc002ggt.1	+	7	2373	c.2300C>T	c.(2299-2301)CCC>CTC	p.P767L	FGF11_uc010vtw.1_5'Flank|SPEM1_uc002ggv.2_5'Flank	NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	767	Cytoplasmic (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				GCCTGCCCGCCCGACTACACC	0.697													3	4					0	0	1	0	0
C17orf74	201243	broad.mit.edu	37	17	7329010	7329010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7329010G>A	uc002ggw.2	+	1	76	c.3G>A	c.(1-3)ATG>ATA	p.M1I	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	1						integral to membrane					0		Prostate(122;0.157)				CCCCCTCCATGGAAAACCAGC	0.607													7	62					0	0	1	0	0
C17orf74	201243	broad.mit.edu	37	17	7329881	7329881	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7329881C>T	uc002ggw.2	+	3	644	c.571C>T	c.(571-573)CTG>TTG	p.L191L	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	191						integral to membrane					0		Prostate(122;0.157)				GGAGGACAACCTGCCCTTCCC	0.602													53	59					0	0	1	0	0
POLR2A	5430	broad.mit.edu	37	17	7401451	7401451	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7401451C>T	uc002ghf.3	+	8	1491	c.1257C>T	c.(1255-1257)ATC>ATT	p.I419I	POLR2A_uc002ghe.2_Silent_p.I419I	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	419					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CCAAGTACATCATCCGAGACA	0.537													32	47					0	0	1	0	0
POLR2A	5430	broad.mit.edu	37	17	7416873	7416873	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7416873C>T	uc002ghf.3	+	29	5524	c.5290C>T	c.(5290-5292)CCG>TCG	p.P1764S		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1764	25.|52 X 7 AA approximate tandem repeats of Y-[ST]-P-[STQ]-[ST]-P-[SRTEVKGN].				mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CAGCTACAGCCCGACATCACC	0.393													121	205					0	0	1	0	0
SHBG	6462	broad.mit.edu	37	17	7534655	7534655	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7534655C>T	uc002gie.2	+	4	569	c.531C>T	c.(529-531)TTC>TTT	p.F177F	SHBG_uc010cmo.2_Intron|SHBG_uc010cmp.2_Silent_p.F119F|SHBG_uc010cmq.2_Intron|SHBG_uc010cmr.2_Intron|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Silent_p.F119F|SHBG_uc010cmu.2_Silent_p.F119F|SHBG_uc010cmz.2_Silent_p.F119F|SHBG_uc010cmv.2_Intron|SHBG_uc010cmw.2_Intron|SHBG_uc010cmx.2_Intron|SHBG_uc010cmy.2_Silent_p.F119F|SHBG_uc002gid.3_Silent_p.F119F|SHBG_uc010cnd.2_Intron|SHBG_uc010cna.2_Intron|SHBG_uc010vue.1_Silent_p.F177F|SHBG_uc010vuf.1_Silent_p.F177F|SHBG_uc010cnb.2_Silent_p.F177F|SHBG_uc010cnc.2_Intron	NM_001040	NP_001031	P04278	SHBG_HUMAN	sex hormone-binding globulin isoform 1	177	Laminin G-like 1.				hormone transport	extracellular region	androgen binding|protein homodimerization activity	p.0?(1)|p.?(1)			0		all_cancers(10;0.0867)		READ - Rectum adenocarcinoma(115;0.168)	Danazol(DB01406)|Dromostanolone(DB00858)|Estradiol(DB00783)|Estrone(DB00655)|Fluoxymesterone(DB01185)|Hydrocortisone(DB00741)|Mitotane(DB00648)|Norethindrone(DB00717)|Testosterone(DB00624)	GGCTGCTCTTCCCCGCTTCCA	0.612													8	15					0	0	1	0	0
TP53	7157	broad.mit.edu	37	17	7578277	7578277	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7578277G>A	uc002gim.2	-	6	766	c.572C>T	c.(571-573)CCT>CTT	p.P191L	TP53_uc002gig.1_Missense_Mutation_p.P191L|TP53_uc002gih.2_Missense_Mutation_p.P191L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.P59L|TP53_uc010cng.1_Missense_Mutation_p.P59L|TP53_uc002gii.1_Missense_Mutation_p.P59L|TP53_uc010cnh.1_Missense_Mutation_p.P191L|TP53_uc010cni.1_Missense_Mutation_p.P191L|TP53_uc002gij.2_Missense_Mutation_p.P191L|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.P98L|TP53_uc002gio.2_Missense_Mutation_p.P59L|TP53_uc010vug.1_Missense_Mutation_p.P152L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	191	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		P -> R (in sporadic cancers; somatic mutation).|P -> L (in sporadic cancers; somatic mutation).|P -> H (in sporadic cancers; somatic mutation).|P -> T (in sporadic cancers; somatic mutation).|P -> S (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.P191del(5)|p.A189_V197delAPPQHLIRV(4)|p.P191fs*56(3)|p.P191L(2)|p.P191fs*53(2)|p.P191R(2)|p.P191S(2)|p.G187fs*16(2)|p.K164_P219del(1)|p.P191fs*6(1)|p.A189_Q192>E(1)|p.P191fs*15(1)|p.P191H(1)|p.P191fs*57(1)|p.P191fs*18(1)|p.P191P(1)|p.P191T(1)|p.P191_Q192delPQ(1)|p.D186_P191delDGLAPP(1)|p.A189fs*53(1)|p.Q192fs*56(1)|p.L188_P191del(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AAGATGCTGAGGAGGGGCCAG	0.557		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			15	22					0	0	1	0	0
TP53	7157	broad.mit.edu	37	17	7578475	7578475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7578475G>A	uc002gim.2	-	5	649	c.455C>T	c.(454-456)CCG>CTG	p.P152L	TP53_uc002gig.1_Missense_Mutation_p.P152L|TP53_uc002gih.2_Missense_Mutation_p.P152L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.P20L|TP53_uc010cng.1_Missense_Mutation_p.P20L|TP53_uc002gii.1_Missense_Mutation_p.P20L|TP53_uc010cnh.1_Missense_Mutation_p.P152L|TP53_uc010cni.1_Missense_Mutation_p.P152L|TP53_uc002gij.2_Missense_Mutation_p.P152L|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.P59L|TP53_uc002gio.2_Missense_Mutation_p.P20L|TP53_uc010vug.1_Missense_Mutation_p.P113L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	152	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		P -> R (in sporadic cancers; somatic mutation).|P -> T (in sporadic cancers; somatic mutation).|P -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|P -> Q (in sporadic cancers; somatic mutation).|P -> S (in sporadic cancers; somatic mutation).|P -> A (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.P152L(57)|p.P152S(21)|p.P152fs*18(17)|p.P152T(7)|p.0?(7)|p.P152fs*29(5)|p.P152P(5)|p.P152Q(4)|p.P153fs*28(4)|p.P152fs*14(4)|p.P152fs*28(3)|p.P152R(3)|p.T150fs*16(3)|p.P152A(2)|p.P153fs*16(1)|p.P151_V173del23(1)|p.P152_P153del(1)|p.D148_T155delDSTPPPGT(1)|p.T150_P153delTPPP(1)|p.D148fs*23(1)|p.P152del(1)|p.S149fs*72(1)|p.S149fs*17(1)|p.Q144_G154del11(1)|p.P152_P153insXXX(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGTGCCGGGCGGGGGTGTGGA	0.612		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			28	41					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7637888	7637888	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7637888C>T	uc002giu.1	+	6	854	c.840C>T	c.(838-840)TTC>TTT	p.F280F	DNAH2_uc002git.2_Silent_p.F280F|DNAH2_uc010vuk.1_Silent_p.F280F	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	280	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGATTGAGTTCTGGCGCAACC	0.537													27	21					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7673916	7673916	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7673916C>T	uc002giu.1	+	25	4154	c.4140C>T	c.(4138-4140)CTC>CTT	p.L1380L		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1380	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGACTCAGCTCGACATAGTAC	0.542													29	47					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7678627	7678627	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7678627C>T	uc002giu.1	+	29	4802	c.4788C>T	c.(4786-4788)TTC>TTT	p.F1596F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1596	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ACATTGACTTCCTCCACTCAG	0.522													11	14					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7691433	7691433	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7691433C>T	uc002giu.1	+	43	6785	c.6771C>T	c.(6769-6771)TTC>TTT	p.F2257F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2257	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AACGCATGTTCGAAAAGCTCA	0.542													10	27					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7695297	7695297	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7695297G>A	uc002giu.1	+	44	6977	c.6963G>A	c.(6961-6963)ATG>ATA	p.M2321I		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2321					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGTTCAGCATGATCTGGTCTG	0.532													55	78					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7696348	7696348	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7696348G>A	uc002giu.1	+	47	7408	c.7394G>A	c.(7393-7395)CGA>CAA	p.R2465Q		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2465	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GTTGAGAAGCGAACCAAGGGT	0.512													36	56					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7697666	7697666	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7697666C>T	uc002giu.1	+	48	7678	c.7664C>T	c.(7663-7665)ACC>ATC	p.T2555I		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2555	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ATCAACATGACCTTCCCCACA	0.602													21	27					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7700763	7700763	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7700763C>T	uc002giu.1	+	51	8009	c.7995C>T	c.(7993-7995)TTC>TTT	p.F2665F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2665					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CAGAAGCCTTCATGGGCATCA	0.552													69	77					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7701593	7701593	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7701593C>T	uc002giu.1	+	53	8363	c.8349C>T	c.(8347-8349)ACC>ACT	p.T2783T		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2783	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ACTACACCACCTTCCAGATCG	0.542													30	33					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7708370	7708370	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7708370C>T	uc002giu.1	+	59	9292	c.9278C>T	c.(9277-9279)CCC>CTC	p.P3093L	DNAH2_uc010cnm.1_Intron	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3093	TPR 3.|Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GAGGCACTGCCCGCCCTGGAA	0.587													45	48					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7720897	7720897	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7720897C>T	uc002giu.1	+	65	10053	c.10039C>T	c.(10039-10041)CCT>TCT	p.P3347S	DNAH2_uc010cnm.1_Missense_Mutation_p.P285S	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3347					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GCTTCAGGTTCCTTGCTCCCC	0.537													70	63					0	0	1	0	0
KDM6B	23135	broad.mit.edu	37	17	7749579	7749579	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7749579C>T	uc002giw.1	+	6	796	c.420C>T	c.(418-420)TTC>TTT	p.F140F	KDM6B_uc002gix.2_5'Flank	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	140					inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						GAGGAAGCTTCGCTGAGCTGG	0.622													10	12					0	0	1	0	0
KDM6B	23135	broad.mit.edu	37	17	7750676	7750676	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7750676C>T	uc002giw.1	+	10	1539	c.1163C>T	c.(1162-1164)TCC>TTC	p.S388F	KDM6B_uc002gix.2_5'Flank	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	388	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						TACGCCCCTTCCCGGCCCCCT	0.572													75	88					0	0	1	0	0
KDM6B	23135	broad.mit.edu	37	17	7751449	7751449	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7751449C>T	uc002giw.1	+	11	2219	c.1843C>T	c.(1843-1845)CAC>TAC	p.H615Y	KDM6B_uc002gix.2_5'UTR	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	615	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						TTCCTCCTGCCACCAAAATAC	0.697													48	53					0	0	1	0	0
GUCY2D	3000	broad.mit.edu	37	17	7909971	7909971	+	Silent	SNP	G	A	A	rs56056557		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7909971G>A	uc002gjt.2	+	4	1391	c.1317G>A	c.(1315-1317)GGG>GGA	p.G439G		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	439	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				TCCCGCGTGGGGGATCAGCAC	0.652													3	12					0	0	1	0	0
ALOX12B	242	broad.mit.edu	37	17	7976251	7976251	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7976251G>A	uc002gjy.1	-	15	2205	c.1944C>T	c.(1942-1944)TTC>TTT	p.F648F		NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	648	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GAATGTCCGGGAAGTGTCCCA	0.687										Multiple Myeloma(8;0.094)			10	14					0	0	1	0	0
ALOX12B	242	broad.mit.edu	37	17	7976593	7976593	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7976593C>T	uc002gjy.1	-	14	2060	c.1799G>A	c.(1798-1800)CGG>CAG	p.R600Q		NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	600	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						CGGTGGATTCCGCATGGACGC	0.587										Multiple Myeloma(8;0.094)			89	129					0	0	1	0	0
ALOX12B	242	broad.mit.edu	37	17	7984041	7984041	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7984041G>A	uc002gjy.1	-	5	846	c.585C>T	c.(583-585)TTC>TTT	p.F195F	uc010cnq.1_RNA	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	195	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						TTAAGTTCAGGAACTTGGTGG	0.577										Multiple Myeloma(8;0.094)	OREG0024153	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	75					0	0	1	0	0
ALOX12B	242	broad.mit.edu	37	17	7989454	7989454	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7989454G>A	uc002gjy.1	-	2	493	c.232C>T	c.(232-234)CCC>TCC	p.P78S	hsa-mir-4314|MI0015846_5'Flank	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	78	PLAT.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GGGTCCTTGGGGAAGAAGGCG	0.592										Multiple Myeloma(8;0.094)			24	26					0	0	1	0	0
ALOX12B	242	broad.mit.edu	37	17	7989509	7989509	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:7989509C>T	uc002gjy.1	-	2	438	c.177G>A	c.(175-177)CAG>CAA	p.Q59Q	hsa-mir-4314|MI0015846_5'Flank	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	59	PLAT.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						CACCCAGGTCCTGAGGGCACT	0.632										Multiple Myeloma(8;0.094)			5	26					0	0	1	0	0
ALOXE3	59344	broad.mit.edu	37	17	8000065	8000065	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8000065G>A	uc010cnr.2	-	16	2386	c.2016C>T	c.(2014-2016)ATC>ATT	p.I672I	ALOXE3_uc002gka.2_Silent_p.I828I|ALOXE3_uc010vuo.1_Silent_p.I804I	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	672	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						GGAAGGCGGCGATGCTCCGCC	0.622													31	45					0	0	1	0	0
ALOXE3	59344	broad.mit.edu	37	17	8007490	8007490	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8007490G>A	uc010cnr.2	-	14	2098	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	ALOXE3_uc002gka.2_Silent_p.F732F|ALOXE3_uc010vuo.1_Silent_p.F708F	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	576	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						TTGCAGTGAGGAACTTCACCA	0.582													11	17					0	0	1	0	0
PER1	5187	broad.mit.edu	37	17	8049772	8049772	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8049772G>A	uc002gkd.2	-	16	2194	c.1956C>T	c.(1954-1956)GCC>GCT	p.A652A	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Silent_p.A636A	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	652	CSNK1E binding domain (By similarity).				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						AGGAGGAGGAGGCACATTTAC	0.592			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					21	43					0	0	1	0	0
C17orf59	54785	broad.mit.edu	37	17	8092541	8092541	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8092541G>A	uc010vut.1	-	1	1024	c.918C>T	c.(916-918)TCC>TCT	p.S306S		NM_017622	NP_060092	Q96GS4	CQ059_HUMAN	hypothetical protein LOC54785	306											0						CTTCACCTAAGGAGTCCACAG	0.677													23	51					0	0	1	0	0
C17orf68	80169	broad.mit.edu	37	17	8146431	8146431	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8146431G>A	uc002gkq.3	-	2	128	c.69C>T	c.(67-69)ATC>ATT	p.I23I	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	23					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						GGGTCTTTTGGATGAAGACCT	0.473													15	22					0	0	1	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8218758	8218758	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8218758G>A	uc002glc.2	+	7	1408	c.1287G>A	c.(1285-1287)GAG>GAA	p.E429E	ARHGEF15_uc002gld.2_Silent_p.E429E|ARHGEF15_uc010vuw.1_Silent_p.E318E	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	429	DH.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						TGACGTCCGAGGCTTCCTACC	0.622													52	106					0	0	1	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8221758	8221758	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8221758G>A	uc002glc.2	+	10	1879	c.1758G>A	c.(1756-1758)AAG>AAA	p.K586K	ARHGEF15_uc002gld.2_Silent_p.K586K|ARHGEF15_uc010vuw.1_Silent_p.K475K	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	586	DH.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						ATGCCCAGAAGGCCCTGGGTG	0.632													45	48					0	0	1	0	0
KRBA2	124751	broad.mit.edu	37	17	8272584	8272584	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8272584G>A	uc002glf.1	-	2	1353	c.1347C>T	c.(1345-1347)AGC>AGT	p.S449S	KRBA2_uc002glg.1_Silent_p.S366S	NM_213597	NP_998762	Q6ZNG9	KRBA2_HUMAN	KRAB-A domain containing 2	449	Potential.				DNA integration|regulation of transcription, DNA-dependent	intracellular	DNA binding				0						TGATCCAAAGGCTATTTTCTA	0.468													56	84					0	0	1	0	0
MYH10	4628	broad.mit.edu	37	17	8417209	8417209	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8417209G>A	uc002gll.2	-	20	2511	c.2415C>T	c.(2413-2415)GCC>GCT	p.A805A	MYH10_uc002glm.2_Silent_p.A836A|MYH10_uc010cnx.2_Silent_p.A814A	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	805	IQ.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TCTTGGCAAAGGCCCTGAAGA	0.453													5	12					0	0	1	0	0
MYH10	4628	broad.mit.edu	37	17	8422107	8422107	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8422107G>A	uc002gll.2	-	19	2349	c.2253C>T	c.(2251-2253)ATC>ATT	p.I751I	MYH10_uc002glm.2_Silent_p.I782I|MYH10_uc010cnx.2_Silent_p.I760I	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	751	Myosin head-like.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						CTAAAGCCCGGATCTAAGAGA	0.348													28	33					0	0	1	0	0
SPDYE4	388333	broad.mit.edu	37	17	8656701	8656701	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8656701G>A	uc010cnz.1	-	5	769	c.592C>T	c.(592-594)CGA>TGA	p.R198*		NM_001128076	NP_001121548	A6NLX3	SPDE4_HUMAN	speedy homolog E4	198											0						AGCTGGTATCGAAGCTTATGG	0.587													3	7					0	0	1	0	0
MFSD6L	162387	broad.mit.edu	37	17	8700810	8700810	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8700810C>T	uc002glp.1	-	1	1777	c.1629G>A	c.(1627-1629)CGG>CGA	p.R543R		NM_152599	NP_689812	Q8IWD5	MFS6L_HUMAN	major facilitator superfamily domain containing	543						integral to membrane				central_nervous_system(1)	1						GGGGCAGCCTCCGCTGTATGG	0.602													31	22					0	0	1	0	0
PIK3R5	23533	broad.mit.edu	37	17	8808164	8808164	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:8808164G>A	uc002glt.2	-	5	409	c.342C>T	c.(340-342)ACC>ACT	p.T114T	PIK3R5_uc010vuz.1_Silent_p.T114T|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Silent_p.T114T|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	114					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						GAACAGGCCAGGTCAGGAACC	0.577													13	52					0	0	1	0	0
WDR16	146845	broad.mit.edu	37	17	9515755	9515755	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:9515755G>A	uc002gly.2	+	8	1053	c.984G>A	c.(982-984)GCG>GCA	p.A328A	WDR16_uc002glz.2_Silent_p.A260A|WDR16_uc010coc.2_Silent_p.A338A	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	328						cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						CGCTCATAGCGACTTGTCACT	0.413													22	31					0	0	1	0	0
DHRS7C	201140	broad.mit.edu	37	17	9674963	9674963	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:9674963C>T	uc010vvb.1	-	6	781	c.781G>A	c.(781-783)GAG>AAG	p.E261K	DHRS7C_uc010cof.2_Missense_Mutation_p.E260K	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	261						extracellular region	binding|oxidoreductase activity				0						CGCATCACCTCCTCCGCCACC	0.622													11	10					0	0	1	0	0
DHRS7C	201140	broad.mit.edu	37	17	9676110	9676110	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:9676110C>T	uc010vvb.1	-	5	704	c.704G>A	c.(703-705)GGA>GAA	p.G235E	DHRS7C_uc010cof.2_Missense_Mutation_p.G234E	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	235						extracellular region	binding|oxidoreductase activity				0						TTCCCAGTTTCCTTGCTCTGG	0.562													17	23					0	0	1	0	0
GLP2R	9340	broad.mit.edu	37	17	9783763	9783763	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:9783763C>T	uc002gmd.1	+	11	1214	c.1214C>T	c.(1213-1215)ACT>ATT	p.T405I		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	405	Helical; Name=6; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	TCTTTCATCACTGATGATCAA	0.383													64	93					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10204902	10204902	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10204902C>T	uc002gmk.1	-	40	5876	c.5786G>A	c.(5785-5787)CGA>CAA	p.R1929Q		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1929	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCCCACGTCTCGGCTCTTGGC	0.582													17	140					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10209890	10209890	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10209890C>T	uc002gmk.1	-	37	5442	c.5352G>A	c.(5350-5352)GAG>GAA	p.E1784E		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1784	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TCTTCATCCGCTCCAGGTGGG	0.577													50	64					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10222127	10222127	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10222127C>T	uc002gmk.1	-	27	3808	c.3718G>A	c.(3718-3720)GAG>AAG	p.E1240K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1240	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GAGAGAGCCTCGATGTTGCTG	0.567													44	46					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10222305	10222305	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10222305C>T	uc002gmk.1	-	27	3630	c.3540G>A	c.(3538-3540)AGG>AGA	p.R1180R		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1180	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CCTCCAGGTCCCTGCGCATTT	0.582													94	77					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10235458	10235458	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10235458G>A	uc002gmk.1	-	20	2346	c.2256C>T	c.(2254-2256)TCC>TCT	p.S752S		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	752	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CCACATCGATGGAGTTGAGGA	0.547													29	38					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10243554	10243554	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10243554C>T	uc002gmk.1	-	18	2059	c.1969G>A	c.(1969-1971)GAA>AAA	p.E657K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	657	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TTTAAATTTTCCTGGGACATA	0.433													16	18					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10250079	10250079	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10250079G>A	uc002gmk.1	-	13	1271	c.1181C>T	c.(1180-1182)TCT>TTT	p.S394F	MYH13_uc010vvf.1_Missense_Mutation_p.S69F	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	394	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CATTTCTGCAGAATTCAGTCC	0.473													16	21					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10263371	10263371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10263371C>T	uc002gmk.1	-	7	641	c.551G>A	c.(550-552)GGG>GAG	p.G184E		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	184	Myosin head-like.|ATP (Potential).				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CACAGTCTTCCCAGCCCCGGA	0.493													28	32					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10265703	10265703	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10265703C>T	uc002gmk.1	-	4	412	c.322G>A	c.(322-324)GAG>AAG	p.E108K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	108	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCATAGCGCTCTTTGAGGTTG	0.443													60	81					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10265791	10265791	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10265791G>A	uc002gmk.1	-	4	324	c.234C>T	c.(232-234)TTC>TTT	p.F78F		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	78	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GGTTCATGGGGAAGACCTGGT	0.483													47	83					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10293918	10293918	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10293918C>T	uc002gmm.2	-	40	5762	c.5667G>A	c.(5665-5667)GAG>GAA	p.E1889E	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1889	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGGATTGTTCCTCCTAAGAAT	0.428									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				38	53					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10304075	10304075	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10304075C>T	uc002gmm.2	-	27	3462	c.3367G>A	c.(3367-3369)GAA>AAA	p.E1123K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1123	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TCGATTTCTTCCCCCAGCTCC	0.522									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				34	29					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10304276	10304276	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10304276C>T	uc002gmm.2	-	26	3350	c.3255G>A	c.(3253-3255)AAG>AAA	p.K1085K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1085	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CAAATTCTTTCCTTTAGACAG	0.333									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				20	30					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10304663	10304663	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10304663G>A	uc002gmm.2	-	24	3132	c.3037C>T	c.(3037-3039)CTG>TTG	p.L1013L	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1013	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TCTGCCTGCAGGTCATCCAGG	0.458									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				86	119					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10312885	10312885	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10312885G>A	uc002gmm.2	-	16	1703	c.1608C>T	c.(1606-1608)ATC>ATT	p.I536I	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	536	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CCTCTTCCAGGATGGAGAAGA	0.473									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				29	55					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10315987	10315987	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10315987G>A	uc002gmm.2	-	13	1301	c.1206C>T	c.(1204-1206)CTC>CTT	p.L402L	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	402	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TAGGGTAGCAGAGGGCTTTGA	0.502									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				96	142					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10315990	10315990	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10315990G>A	uc002gmm.2	-	13	1298	c.1203C>T	c.(1201-1203)GCC>GCT	p.A401A	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	401	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GGTAGCAGAGGGCTTTGAGTA	0.498									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				94	133					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10323457	10323457	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10323457G>A	uc002gmm.2	-	3	183	c.88C>T	c.(88-90)CAA>TAA	p.Q30*	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	30	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GGCTTGTTTTGGGCCTCAATC	0.478									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				78	103					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10348598	10348598	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10348598C>T	uc002gmn.2	-	36	5362	c.5251G>A	c.(5251-5253)GAA>AAA	p.E1751K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1751	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGCGGGCTTCCTGGACGATG	0.468													45	109					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10353916	10353916	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10353916G>A	uc002gmn.2	-	30	4146	c.4035C>T	c.(4033-4035)GAC>GAT	p.D1345D	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1345	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CCCGCAGCAGGTCACAGTCAT	0.532													39	45					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10356180	10356180	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10356180C>T	uc002gmn.2	-	25	3292	c.3181G>A	c.(3181-3183)GGT>AGT	p.G1061S	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1061	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTTAGGTCACCCTCCAGTTTT	0.343													69	96					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10357094	10357094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10357094C>T	uc002gmn.2	-	23	2911	c.2800G>A	c.(2800-2802)GAA>AAA	p.E934K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	934	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGATCTCTTCCTCATCCTCA	0.443													110	247					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10357980	10357980	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10357980C>T	uc002gmn.2	-	22	2694	c.2583G>A	c.(2581-2583)GAG>GAA	p.E861E	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	861	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTTTGGTTTTCTCAAATTCTT	0.438													40	100					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10358346	10358346	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10358346C>T	uc002gmn.2	-	21	2458	c.2347G>A	c.(2347-2349)GAA>AAA	p.E783K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	783	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCTAGCTTTTCATCTCGCATT	0.443													28	44					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10358358	10358358	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10358358C>T	uc002gmn.2	-	21	2446	c.2335G>A	c.(2335-2337)GAA>AAA	p.E779K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	779	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCTCGCATTTCCTCTAGAGTT	0.418													28	41					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10363550	10363550	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10363550C>T	uc002gmn.2	-	13	1347	c.1236G>A	c.(1234-1236)GAG>GAA	p.E412E	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	412	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGGTTACGAACTCATTGCCGA	0.438													46	54					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10369690	10369690	+	Missense_Mutation	SNP	G	A	A	rs112133139		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10369690G>A	uc002gmn.2	-	4	359	c.248C>T	c.(247-249)CCC>CTC	p.P83L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	83	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GTCATATTTGGGAGGGTTCAT	0.438													56	81					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10401081	10401081	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10401081G>A	uc002gmo.2	-	31	4429	c.4335C>T	c.(4333-4335)GCC>GCT	p.A1445A	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1445	Potential.		A -> T (in a breast cancer sample; somatic mutation).			muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity	p.A1445T(1)		ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTTTGTCCAGGGCGGCACAGG	0.453													41	62					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10401959	10401959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10401959C>T	uc002gmo.2	-	30	4259	c.4165G>A	c.(4165-4167)GAG>AAG	p.E1389K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1389	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCCTCCAGCTCCTCTGTGCGC	0.478													51	71					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10404786	10404786	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10404786C>T	uc002gmo.2	-	27	3473	c.3379G>A	c.(3379-3381)GAG>AAG	p.E1127K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1127	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CGCTCTGCCTCGATTTCCTCC	0.542													30	32					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10408483	10408483	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10408483C>T	uc002gmo.2	-	21	2526	c.2432G>A	c.(2431-2433)AGA>AAA	p.R811K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	811	IQ.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTAATACCTTCTTTCCACCAT	0.418													26	71					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10408708	10408708	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10408708G>A	uc002gmo.2	-	20	2389	c.2295C>T	c.(2293-2295)ACC>ACT	p.T765T	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	765	Myosin head-like.|Actin-binding (By similarity).					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATATTACCTTGGTGTGACCAA	0.408													44	81					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10409243	10409243	+	Missense_Mutation	SNP	G	A	A	rs142560385	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10409243G>A	uc002gmo.2	-	19	2154	c.2060C>T	c.(2059-2061)GCC>GTC	p.A687V	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	687	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATGCTCCATGGCACCTAAAAG	0.473													7	54					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10415830	10415830	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10415830C>T	uc002gmo.2	-	12	1136	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	348	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GACACTCTTTCATCTGAAGTA	0.428													23	72					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10416277	10416277	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10416277G>A	uc002gmo.2	-	10	905	c.811C>T	c.(811-813)CTG>TTG	p.L271L	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	271	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GACTTCTCCAGAAGATCTGCA	0.383													10	16					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10419245	10419245	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10419245G>A	uc002gmo.2	-	5	597	c.503C>T	c.(502-504)ACT>ATT	p.T168I	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	168	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CCACTCACCAGTCAGCATGAA	0.358													73	92					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10419850	10419850	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10419850G>A	uc002gmo.2	-	3	204	c.110C>T	c.(109-111)TCA>TTA	p.S37L	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	37	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CACAAAGACTGATGTCTTGGC	0.522													20	175					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10419894	10419894	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10419894C>T	uc002gmo.2	-	3	160	c.66G>A	c.(64-66)AGG>AGA	p.R22R	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	22	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CAATTCGCTCCCTTTCAGACT	0.507													45	88					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10427852	10427852	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10427852C>T	uc010coi.2	-	35	5234	c.5106G>A	c.(5104-5106)GAG>GAA	p.E1702E	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.E1702E|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1702	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTCTGCTCCTCTCTGTCTGTT	0.577													43	62					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10433021	10433021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10433021C>T	uc010coi.2	-	24	3105	c.2977G>A	c.(2977-2979)GAA>AAA	p.E993K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E993K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	993	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCAATGGTTTCATCCAGACCT	0.502													87	107					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10435015	10435015	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10435015C>T	uc010coi.2	-	22	2760	c.2632G>A	c.(2632-2634)GAA>AAA	p.E878K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E878K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	878	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCTTCCAGTTCCTTCCTTTTT	0.423													38	41					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10435073	10435073	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10435073C>T	uc010coi.2	-	22	2702	c.2574G>A	c.(2572-2574)ATG>ATA	p.M858I	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.M858I|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	858	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ATTCTTCCTTCATGGTGGCCA	0.423													39	51					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10436605	10436605	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10436605C>T	uc010coi.2	-	21	2566	c.2438G>A	c.(2437-2439)AGA>AAA	p.R813K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.R813K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	813	IQ.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTTATACCTTCTCTCCACCAT	0.433													51	61					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10440650	10440650	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10440650C>T	uc010coi.2	-	16	1925	c.1797G>A	c.(1795-1797)AAG>AAA	p.K599K	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.K599K|MYH2_uc010coj.2_Silent_p.K599K	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	599	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GGTCCTTGTTCTTCTCCAGCC	0.527													69	91					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10443963	10443963	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10443963C>T	uc010coi.2	-	11	1084	c.956G>A	c.(955-957)GGG>GAG	p.G319E	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G319E|MYH2_uc010coj.2_Missense_Mutation_p.G319E	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	319	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ACTGATCTCCCCTTGACTGAC	0.383													8	28					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10448673	10448673	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10448673G>A	uc010coi.2	-	5	623	c.495C>T	c.(493-495)TTC>TTT	p.F165F	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.F165F|MYH2_uc010coj.2_Silent_p.F165F	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	165	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CAGTCAGCATGAACTGATAGG	0.527													79	183					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10538689	10538689	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10538689C>T	uc002gmq.1	-	29	4244	c.4167G>A	c.(4165-4167)GAG>GAA	p.E1389E		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1389	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CGCACTTGGCCTCCTCCAGCT	0.488													59	74					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10545925	10545925	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10545925T>C	uc002gmq.1	-	15	1774	c.1697A>G	c.(1696-1698)AAG>AGG	p.K566R		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	566	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CACCTTGGGCTTCTGGAAGTT	0.532													59	81					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10545978	10545978	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10545978G>A	uc002gmq.1	-	15	1721	c.1644C>T	c.(1642-1644)TCC>TCT	p.S548S		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	548	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TGTTCTTGAAGGAGGTGTCTG	0.512													47	79					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10550730	10550730	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10550730C>T	uc002gmq.1	-	8	826	c.749G>A	c.(748-750)CGA>CAA	p.R250Q		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	250	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						AAAATGGATTCGGATGAACTT	0.483													23	32					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10554890	10554890	+	Silent	SNP	G	A	A	rs148322984		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10554890G>A	uc002gmq.1	-	4	521	c.444C>T	c.(442-444)CGC>CGT	p.R148R		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	148	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						GGGCCTCCTGGCGCTTTTTGC	0.577													95	113					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10555862	10555862	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:10555862C>T	uc002gmq.1	-	3	300	c.223G>A	c.(223-225)GAG>AAG	p.E75K		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	75	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TACACATCCTCTGGTTTGACC	0.443													34	51					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11532847	11532847	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11532847G>A	uc002gne.2	+	7	1532	c.1464G>A	c.(1462-1464)GAG>GAA	p.E488E		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	488	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AATTTCAAGAGATGTACAGGC	0.557													33	47					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11535948	11535948	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11535948T>A	uc002gne.2	+	8	1631	c.1563T>A	c.(1561-1563)GAT>GAA	p.D521E		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	521	Potential.|Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AAGTAGAAGATCTTGACCGAA	0.408													36	76					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11572916	11572916	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11572916C>T	uc002gne.2	+	17	3226	c.3158C>T	c.(3157-3159)CCC>CTC	p.P1053L	DNAH9_uc010coo.2_Missense_Mutation_p.P347L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1053	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GAGAACCCTCCCCTCCTTTCT	0.507													37	77					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11583189	11583189	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11583189G>A	uc002gne.2	+	18	3537	c.3469G>A	c.(3469-3471)GAA>AAA	p.E1157K	DNAH9_uc010coo.2_Missense_Mutation_p.E451K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1157	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGCTGTTAAAGAACGGCAGAG	0.408													48	88					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11607595	11607595	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11607595G>A	uc002gne.2	+	25	5295	c.5227G>A	c.(5227-5229)GAG>AAG	p.E1743K	DNAH9_uc010coo.2_Missense_Mutation_p.E1037K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1743	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGAAGGCTATGAGAGTGCCAT	0.527													27	43					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11631189	11631189	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11631189G>A	uc002gne.2	+	28	5832	c.5764G>A	c.(5764-5766)GAT>AAT	p.D1922N	DNAH9_uc010coo.2_Missense_Mutation_p.D1216N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1922	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGGCTGCTTTGATGAGTTTAA	0.488													21	23					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11631223	11631223	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11631223C>T	uc002gne.2	+	28	5866	c.5798C>T	c.(5797-5799)TCA>TTA	p.S1933L	DNAH9_uc010coo.2_Missense_Mutation_p.S1227L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1933	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GAGGTCTTGTCAGTGGTGGCA	0.493													19	20					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11642314	11642314	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11642314G>A	uc002gne.2	+	29	6000	c.5932G>A	c.(5932-5934)GGC>AGC	p.G1978S	DNAH9_uc010coo.2_Missense_Mutation_p.G1272S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1978	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGGCTATGCTGGCCGCACAGA	0.488													11	37					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11648272	11648272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11648272C>T	uc002gne.2	+	31	6338	c.6270C>T	c.(6268-6270)TTC>TTT	p.F2090F	DNAH9_uc010coo.2_Silent_p.F1384F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2090					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGCCCATCTTCATGGGCCTGA	0.572													19	23					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11650885	11650885	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11650885G>A	uc002gne.2	+	32	6480	c.6412G>A	c.(6412-6414)GAG>AAG	p.E2138K	DNAH9_uc010coo.2_Missense_Mutation_p.E1432K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2138	AAA 2 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGTCCAGCTGGAGGAGCTCCT	0.582													15	12					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11651035	11651035	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11651035G>A	uc002gne.2	+	32	6630	c.6562G>A	c.(6562-6564)GAT>AAT	p.D2188N	DNAH9_uc010coo.2_Missense_Mutation_p.D1482N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2188	AAA 2 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGTCACAAATGATGAGCTCTT	0.522													21	38					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11666769	11666769	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11666769C>T	uc002gne.2	+	36	7076	c.7008C>T	c.(7006-7008)ATC>ATT	p.I2336I	DNAH9_uc010coo.2_Silent_p.I1630I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2336					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTAAGAAGATCATTCCCATCC	0.498													41	78					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11684402	11684402	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11684402C>T	uc002gne.2	+	39	7697	c.7629C>T	c.(7627-7629)TTC>TTT	p.F2543F	DNAH9_uc010coo.2_Silent_p.F1837F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2543	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCATCTATTTCATTGATGACA	0.557													13	26					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11700964	11700964	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11700964C>T	uc002gne.2	+	43	8342	c.8274C>T	c.(8272-8274)CAC>CAT	p.H2758H	DNAH9_uc010coo.2_Silent_p.H2052H	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2758					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGTATTGTCACTTTGCAAATG	0.493													17	32					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11725334	11725334	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11725334G>A	uc002gne.2	+	46	8873	c.8805G>A	c.(8803-8805)GAG>GAA	p.E2935E	DNAH9_uc010coo.2_Silent_p.E2229E	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2935	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACAACAGAGAGAACTGTTGGA	0.478													18	25					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11725780	11725780	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11725780G>A	uc002gne.2	+	47	8944	c.8876G>A	c.(8875-8877)GGA>GAA	p.G2959E	DNAH9_uc010coo.2_Missense_Mutation_p.G2253E	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2959	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCCCCTGTGGGAAACAAGCTA	0.542													13	89					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11725817	11725817	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11725817C>T	uc002gne.2	+	47	8981	c.8913C>T	c.(8911-8913)GCC>GCT	p.A2971A	DNAH9_uc010coo.2_Silent_p.A2265A	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2971	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGTTCCCAGCCATTGTGAACT	0.552													48	67					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11738216	11738216	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11738216G>A	uc002gne.2	+	49	9575	c.9507_splice	c.e49+1	p.K3169_splice	DNAH9_uc010coo.2_Splice_Site_p.K2463_splice	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2						cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCTGAACAAGGTAGGAGGACT	0.562													6	7					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11835445	11835445	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11835445C>T	uc002gne.2	+	64	12288	c.12220C>T	c.(12220-12222)CGC>TGC	p.R4074C	DNAH9_uc010coo.2_Missense_Mutation_p.R3292C|DNAH9_uc002gnf.2_Missense_Mutation_p.R386C	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4074	AAA 6 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGGATGGAATCGCTCATACCC	0.502													49	63					0	0	1	0	0
ZNF18	7566	broad.mit.edu	37	17	11881712	11881712	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11881712G>A	uc002gng.1	-	9	1817	c.1212C>T	c.(1210-1212)GCC>GCT	p.A404A	ZNF18_uc002gnh.1_Silent_p.A404A|ZNF18_uc002gni.1_Silent_p.A403A	NM_144680	NP_653281	P17022	ZNF18_HUMAN	zinc finger protein 18	404					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1				Colorectal(4;3.33e-05)|COAD - Colon adenocarcinoma(4;0.000494)|READ - Rectum adenocarcinoma(10;0.233)		GGAGCTTCTGGGCCATGGGGG	0.507													6	64					0	0	1	0	0
ZNF18	7566	broad.mit.edu	37	17	11881772	11881772	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:11881772G>A	uc002gng.1	-	9	1757	c.1152C>T	c.(1150-1152)ACC>ACT	p.T384T	ZNF18_uc002gnh.1_Silent_p.T384T|ZNF18_uc002gni.1_Silent_p.T383T	NM_144680	NP_653281	P17022	ZNF18_HUMAN	zinc finger protein 18	384					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1				Colorectal(4;3.33e-05)|COAD - Colon adenocarcinoma(4;0.000494)|READ - Rectum adenocarcinoma(10;0.233)		CAAGCCACATGGTGGACATTT	0.532													19	63					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12618853	12618853	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:12618853G>A	uc002gnn.2	+	3	438	c.139G>A	c.(139-141)GAA>AAA	p.E47K	MYOCD_uc002gno.2_Missense_Mutation_p.E47K	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	47					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ACGTCCAGCTGAATTCCATGA	0.418													20	26					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12639525	12639525	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:12639525G>A	uc002gnn.2	+	6	762	c.463G>A	c.(463-465)GAG>AAG	p.E155K	MYOCD_uc002gno.2_Missense_Mutation_p.E155K|MYOCD_uc002gnp.1_Missense_Mutation_p.E59K	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	155	HDAC5-binding (By similarity).				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TGCCTTTGAAGAGGACAGCAG	0.547													88	130					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12649361	12649361	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:12649361C>T	uc002gnn.2	+	9	1396	c.1097C>T	c.(1096-1098)CCA>CTA	p.P366L	MYOCD_uc002gno.2_Missense_Mutation_p.P366L|MYOCD_uc002gnp.1_Missense_Mutation_p.P270L|MYOCD_uc002gnq.2_Missense_Mutation_p.P85L	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	366					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AAACCAGGCCCACTCCCACCT	0.408													14	109					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12656327	12656327	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:12656327G>A	uc002gnn.2	+	10	2021	c.1722G>A	c.(1720-1722)GAG>GAA	p.E574E	MYOCD_uc002gno.2_Silent_p.E574E|MYOCD_uc002gnp.1_Silent_p.E478E|MYOCD_uc002gnq.2_Silent_p.E293E	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	574					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AGCAGGAAGAGGCTGTCTCCA	0.532													28	25					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12661513	12661513	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:12661513G>A	uc002gnn.2	+	11	2469	c.2170G>A	c.(2170-2172)GAA>AAA	p.E724K	MYOCD_uc002gno.2_Missense_Mutation_p.E772K|MYOCD_uc002gnp.1_Missense_Mutation_p.E676K|MYOCD_uc002gnq.2_Intron	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	724					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TCCATCCTATGAAGATGCCGT	0.393													21	36					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12666901	12666901	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:12666901C>T	uc002gnn.2	+	13	3056	c.2757C>T	c.(2755-2757)TTC>TTT	p.F919F	MYOCD_uc002gno.2_Silent_p.F967F|MYOCD_uc002gnq.2_Silent_p.F643F	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	919					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ACATCGATTTCCTGGATGTCA	0.517													17	26					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12666919	12666919	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:12666919C>T	uc002gnn.2	+	13	3074	c.2775C>T	c.(2773-2775)CTC>CTT	p.L925L	MYOCD_uc002gno.2_Silent_p.L973L|MYOCD_uc002gnq.2_Silent_p.L649L	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	925					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TCACTGATCTCAATTTGAATT	0.522													14	31					0	0	1	0	0
RICH2	9912	broad.mit.edu	37	17	12832322	12832322	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:12832322G>A	uc002gnr.3	+	7	868	c.541G>A	c.(541-543)GAA>AAA	p.E181K	RICH2_uc010vvk.1_Missense_Mutation_p.E181K|RICH2_uc010vvl.1_Missense_Mutation_p.E181K|RICH2_uc002gns.3_Intron|RICH2_uc010vvm.1_Missense_Mutation_p.E181K|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	181	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						TGCCCTCAGGGAAGAAATGGA	0.552													10	14					0	0	1	0	0
ELAC2	60528	broad.mit.edu	37	17	12903528	12903528	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:12903528G>A	uc002gnz.3	-	15	1463	c.1368C>T	c.(1366-1368)TTC>TTT	p.F456F	ELAC2_uc002gnu.3_5'UTR|ELAC2_uc002gnv.3_Silent_p.F84F|ELAC2_uc002gnw.3_Silent_p.F114F|ELAC2_uc002gnx.3_Silent_p.F216F|ELAC2_uc010vvo.1_Silent_p.F254F|ELAC2_uc010vvp.1_Silent_p.F437F|ELAC2_uc010vvq.1_Silent_p.F455F|ELAC2_uc010vvr.1_Silent_p.F416F	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	456					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						CGCTCTGCTGGAAGTTGGGAA	0.577									Hereditary_Prostate_Cancer				15	29					0	0	1	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13503904	13503904	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:13503904C>T	uc002gob.1	-	1	1341	c.543G>A	c.(541-543)GTG>GTA	p.V181V		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	181	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GCTCGGCGCCCACGGCGCGCA	0.721													3	7					0	0	1	0	0
TEKT3	64518	broad.mit.edu	37	17	15234464	15234464	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:15234464C>T	uc002gon.2	-	3	626	c.439G>A	c.(439-441)GGA>AGA	p.G147R		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	147					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		ACACGTTCTCCCAGATTTTGG	0.388													30	51					0	0	1	0	0
TEKT3	64518	broad.mit.edu	37	17	15234791	15234791	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:15234791G>A	uc002gon.2	-	3	299	c.112C>T	c.(112-114)CCC>TCC	p.P38S		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	38					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		TTGGAGTGGGGAAAGCGGTCC	0.537													18	33					0	0	1	0	0
NCOR1	9611	broad.mit.edu	37	17	15964870	15964870	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:15964870G>A	uc002gpo.2	-	37	5966	c.5726C>T	c.(5725-5727)CCT>CTT	p.P1909L	NCOR1_uc002gpn.2_Intron|NCOR1_uc002gpm.2_Missense_Mutation_p.P429L|NCOR1_uc010vwb.1_Missense_Mutation_p.P493L|NCOR1_uc010coy.2_Missense_Mutation_p.P817L|NCOR1_uc010vwc.1_Missense_Mutation_p.P719L	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1909	Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TTTTGGAGGAGGCCCTTTATC	0.463													22	154					0	0	1	0	0
NCOR1	9611	broad.mit.edu	37	17	15973617	15973617	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:15973617G>A	uc002gpo.2	-	31	4615	c.4375C>T	c.(4375-4377)CTT>TTT	p.L1459F	NCOR1_uc002gpn.2_Missense_Mutation_p.L1475F|NCOR1_uc002gpp.1_Missense_Mutation_p.L1366F|NCOR1_uc002gpm.2_5'Flank|NCOR1_uc010vwb.1_Missense_Mutation_p.L43F|NCOR1_uc010coy.2_Missense_Mutation_p.L367F|NCOR1_uc010vwc.1_Missense_Mutation_p.L270F	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1459	Interaction with ETO.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GTGGACCTAAGAACGGAGGGG	0.522													46	113					0	0	1	0	0
ZNF287	57336	broad.mit.edu	37	17	16466515	16466515	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:16466515G>A	uc002gqi.2	-	5	1113	c.660C>T	c.(658-660)CCC>CCT	p.P220P		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	213	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		CTTCCAATATGGGAATCACAG	0.368													14	58					0	0	1	0	0
CCDC144A	9720	broad.mit.edu	37	17	16612290	16612290	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:16612290G>A	uc002gqk.1	+	5	995	c.919G>A	c.(919-921)GAA>AAA	p.E307K	CCDC144A_uc002gql.1_Intron|LOC162632_uc010cpj.1_5'Flank	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	307											0						TGAAATTTATGAAAAATACAA	0.338													22	38					0	0	1	0	0
LOC162632	162632	broad.mit.edu	37	17	16701712	16701712	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:16701712G>A	uc010cpj.1	+	18		c.4243G>A			LOC162632_uc010cpk.1_RNA|LOC162632_uc010vwq.1_RNA|LOC162632_uc002gqm.2_RNA					Homo sapiens mRNA for KIAA0565 protein, partial cds.												0						CCAGGGGGATGAGCTCTCCAA	0.522													22	45					0	0	1	0	0
TNFRSF13B	23495	broad.mit.edu	37	17	16852153	16852153	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:16852153G>A	uc002gqs.1	-	3	357	c.344C>T	c.(343-345)CCA>CTA	p.P115L	TNFRSF13B_uc010vwt.1_RNA|TNFRSF13B_uc002gqt.1_Missense_Mutation_p.P69L|TNFRSF13B_uc010vwu.1_Missense_Mutation_p.P115L	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	115	Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						GAGCTCTGGTGGAAGGTTCAC	0.527									IgA_Deficiency_Selective				71	84					0	0	1	0	0
TNFRSF13B	23495	broad.mit.edu	37	17	16855835	16855835	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:16855835G>A	uc002gqs.1	-	2	137	c.124C>T	c.(124-126)CCT>TCT	p.P42S	TNFRSF13B_uc010vwt.1_Intron|TNFRSF13B_uc002gqt.1_Intron|TNFRSF13B_uc010vwu.1_Missense_Mutation_p.P42S	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	42	TNFR-Cys 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						CCCAGCAGAGGATCCCAGTAC	0.617									IgA_Deficiency_Selective				19	25					0	0	1	0	0
NT5M	56953	broad.mit.edu	37	17	17250254	17250254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:17250254C>T	uc002grf.2	+	5	865	c.680C>T	c.(679-681)CCC>CTC	p.P227L	NT5M_uc002gre.2_Missense_Mutation_p.P226S|NT5M_uc002grg.2_Missense_Mutation_p.P233L	NM_020201	NP_064586	Q9NPB1	NT5M_HUMAN	5',3'-nucleotidase, mitochondrial precursor	227					DNA replication|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	5'-nucleotidase activity|metal ion binding|nucleotide binding				0						AGCAAGCGGCCCTGCTGAGCT	0.682													15	32					0	0	1	0	0
MED9	55090	broad.mit.edu	37	17	17394729	17394729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:17394729C>T	uc002grh.1	+	2	417	c.361C>T	c.(361-363)CTC>TTC	p.L121F		NM_018019	NP_060489	Q9NWA0	MED9_HUMAN	mediator complex subunit 9	121	Potential.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		protein binding				0						GCTGCAGAGCCTCCGGGAGCA	0.557													30	53					0	0	1	0	0
RAI1	10743	broad.mit.edu	37	17	17697186	17697186	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:17697186C>T	uc002grm.2	+	3	1393	c.924C>T	c.(922-924)CTC>CTT	p.L308L	RAI1_uc002grn.1_Silent_p.L308L	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	308	Gln-rich.					cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		ACCAAAACCTCGCCAAGTATC	0.493													34	68					0	0	1	0	0
RAI1	10743	broad.mit.edu	37	17	17699041	17699041	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:17699041C>T	uc002grm.2	+	3	3248	c.2779C>T	c.(2779-2781)CTG>TTG	p.L927L	RAI1_uc002grn.1_Silent_p.L927L	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	927						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GTCCGTCATCCTGCTGGGCCC	0.632													13	29					0	0	1	0	0
LRRC48	83450	broad.mit.edu	37	17	17891358	17891358	+	Silent	SNP	C	T	T	rs145108400	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:17891358C>T	uc010vxd.1	+	6	769	c.390C>T	c.(388-390)CTC>CTT	p.L130L	LRRC48_uc002gsa.2_Silent_p.L130L|LRRC48_uc010vxc.1_Silent_p.L130L|LRRC48_uc002gsb.2_Silent_p.L130L	NM_001130090	NP_001123562	Q9H069	LRC48_HUMAN	leucine rich repeat containing 48 isoform a	130	LRR 4.					cytoplasm				pancreas(1)	1	all_neural(463;0.228)					TGGACGCCCTCGTCAAGCTGC	0.587													14	29					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18022300	18022300	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18022300C>T	uc010vxh.1	+	2	524	c.186C>T	c.(184-186)GGC>GGT	p.G62G		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	62	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TCTTCTGGGGCCTCCACACCG	0.632													8	13					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18030129	18030129	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18030129C>T	uc010vxh.1	+	6	4229	c.3891C>T	c.(3889-3891)CTC>CTT	p.L1297L		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1297	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TTGCAAATCTCGCCTTCGCCA	0.547													79	91					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18039118	18039118	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18039118G>A	uc010vxh.1	+	12	4914	c.4576G>A	c.(4576-4578)GCC>ACC	p.A1526T		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1526	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCTGCAGAAGGCCATCACCTT	0.592													4	22					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18044404	18044404	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18044404G>A	uc010vxh.1	+	21	5816	c.5478G>A	c.(5476-5478)AGG>AGA	p.R1826R		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1826	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AGACCGTGAGGATCCGCAAGG	0.552											OREG0024223	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	16					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18062264	18062264	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18062264G>A	uc010vxh.1	+	52	9447	c.9109G>A	c.(9109-9111)GAG>AAG	p.E3037K	MYO15A_uc010vxi.1_Missense_Mutation_p.E301K|MYO15A_uc010vxk.1_Intron|MYO15A_uc010vxl.1_Missense_Mutation_p.E26K|MYO15A_uc002gsl.2_5'UTR|MYO15A_uc010vxm.1_5'Flank|MYO15A_uc002gsm.1_5'Flank|MYO15A_uc010cpv.2_5'Flank	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	3037	Tail.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GAAATCCAAGGAGCCTCGGGA	0.478													13	35					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18075548	18075548	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18075548C>T	uc010vxh.1	+	63	10632	c.10294C>T	c.(10294-10296)CCT>TCT	p.P3432S	MYO15A_uc010vxi.1_Missense_Mutation_p.P696S|MYO15A_uc010vxk.1_Missense_Mutation_p.P125S|MYO15A_uc010vxl.1_Missense_Mutation_p.P421S|MYO15A_uc002gsl.2_Missense_Mutation_p.P422L|MYO15A_uc010vxm.1_Silent_p.P255P|MYO15A_uc010cpv.2_RNA	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	3432	Tail.|FERM.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TGTGCCAGCCCCTTGCATCCT	0.587													27	37					0	0	1	0	0
ALKBH5	54890	broad.mit.edu	37	17	18087711	18087711	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18087711C>T	uc010cpw.2	+	1	845	c.154C>T	c.(154-156)CCT>TCT	p.P52S	uc002gsn.2_RNA	NM_017758	NP_060228	Q6P6C2	ALKB5_HUMAN	alkB, alkylation repair homolog 5	52						integral to membrane	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0	all_neural(463;0.228)					cgAACCTTACCCTGTGTCCGG	0.458													3	4					0	0	1	0	0
FLII	2314	broad.mit.edu	37	17	18156698	18156698	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18156698G>A	uc002gsr.1	-	9	981	c.930C>T	c.(928-930)CCC>CCT	p.P310P	FLII_uc002gsq.1_Silent_p.P182P|FLII_uc010cpy.1_Silent_p.P299P|FLII_uc010vxn.1_Silent_p.P279P|FLII_uc010vxo.1_Silent_p.P256P|FLII_uc002gss.1_Silent_p.P310P	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	310	Interaction with LRRFIP1 and LRRFIP2.|LRR 13.				multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					CAATGCCTGAGGGCAGCCCGT	0.582													7	48					0	0	1	0	0
SMCR7	125170	broad.mit.edu	37	17	18167217	18167217	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18167217C>T	uc002gst.2	+	4	715	c.504C>T	c.(502-504)TTC>TTT	p.F168F	SMCR7_uc002gsu.2_Missense_Mutation_p.P144S|SMCR7_uc010vxq.1_Silent_p.F179F	NM_139162	NP_631901	Q96C03	SMCR7_HUMAN	Smith-Magenis syndrome chromosome region,	168						integral to membrane	protein binding				0	all_neural(463;0.228)					GGAGCAAGTTCCCGGAACTGC	0.672													13	12					0	0	1	0	0
TOP3A	7156	broad.mit.edu	37	17	18181530	18181530	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18181530G>A	uc002gsx.1	-	18	2515	c.2286C>T	c.(2284-2286)CCC>CCT	p.P762P	TOP3A_uc010cpz.1_Silent_p.P214P|TOP3A_uc010vxr.1_Silent_p.P292P|TOP3A_uc002gsw.1_Silent_p.P214P|TOP3A_uc010vxs.1_Silent_p.P660P	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	762					DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			skin(3)	3						GGCGGCCAGAGGGCTGGCTAG	0.627													31	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	18333049	18333049	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18333049G>A	uc010vxz.1	+	4		c.871G>A								Homo sapiens cDNA FLJ61294 complete cds, highly similar to Keratin, type I cytoskeletal 17.																		GTGGAGATGGGCGCTGCCCCA	0.582													21	17					0	0	1	0	0
ZNF286B	729288	broad.mit.edu	37	17	18565296	18565296	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18565296G>A	uc010vyd.1	-	5	1774	c.1523C>T	c.(1522-1524)TCA>TTA	p.S508L		NM_001145045	NP_001138517	P0CG31	Z286B_HUMAN	zinc finger protein 286B	508	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GATGAGAGATGAACTGCACTT	0.363													18	27					0	0	1	0	0
TRIM16L	147166	broad.mit.edu	37	17	18638769	18638769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18638769C>T	uc002gug.1	+	10	1730	c.1043C>T	c.(1042-1044)CCC>CTC	p.P348L	TRIM16L_uc010vyf.1_Missense_Mutation_p.P402L|TRIM16L_uc002guh.1_Missense_Mutation_p.P348L|TRIM16L_uc010cqg.1_Missense_Mutation_p.P450L|TRIM16L_uc002gui.1_Missense_Mutation_p.P348L|TRIM16L_uc010vyg.1_Missense_Mutation_p.P348L|TRIM16L_uc010vyh.1_3'UTR	NM_001037330	NP_001032407	Q309B1	TR16L_HUMAN	tripartite motif-containing 16-like	348						cytoplasm					0						GGGACTGCTCCCTAGACTCCA	0.522													5	17					0	0	1	0	0
FBXW10	10517	broad.mit.edu	37	17	18648044	18648044	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18648044G>A	uc002guk.2	+	1	719	c.487G>A	c.(487-489)GAG>AAG	p.E163K	FBXW10_uc002guj.2_Missense_Mutation_p.E163K|FBXW10_uc002gul.2_Missense_Mutation_p.E163K|FBXW10_uc010cqh.1_Missense_Mutation_p.E163K	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	163										ovary(1)	1						GTTTCTGAGAGAGGAGAACAA	0.493													12	34					0	0	1	0	0
FBXW10	10517	broad.mit.edu	37	17	18668094	18668094	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18668094C>T	uc002guk.2	+	8	1705	c.1473C>T	c.(1471-1473)TTC>TTT	p.F491F	FBXW10_uc002guj.2_Silent_p.F491F|FBXW10_uc002gul.2_Silent_p.F520F|FBXW10_uc010cqh.1_Silent_p.F491F	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	491										ovary(1)	1						CACGAATCTTCGGTGGTCACC	0.493													27	32					0	0	1	0	0
FBXW10	10517	broad.mit.edu	37	17	18671986	18671987	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18671986_18671987CC>TT	uc002guk.2	+	10	2076_2077	c.1844_1845CC>TT	c.(1843-1845)CCC>CTT	p.P615L	FBXW10_uc002guj.2_Missense_Mutation_p.P615L|FBXW10_uc002gul.2_Missense_Mutation_p.P644L|FBXW10_uc010cqh.1_Missense_Mutation_p.P615L	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	615	WD 7.									ovary(1)	1						TTCAAGCATCCCAAGTAGGTGC	0.569													24	16					0	0	1	0	0
SLC5A10	125206	broad.mit.edu	37	17	18863935	18863935	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:18863935C>T	uc002guu.1	+	5	464	c.423C>T	c.(421-423)TCC>TCT	p.S141S	SLC5A10_uc002gur.1_Silent_p.S85S|SLC5A10_uc002gut.1_Silent_p.S141S|SLC5A10_uc002guv.1_Silent_p.S141S|SLC5A10_uc010vyl.1_Silent_p.S141S	NM_001042450	NP_001035915	A0PJK1	SC5AA_HUMAN	solute carrier family 5 (sodium/glucose	141	Cytoplasmic (Potential).				sodium ion transport|transmembrane transport	integral to membrane	transporter activity			ovary(1)	1						CTGTCCTGTCCCTGCTACTGT	0.557											OREG0024231	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	57					0	0	1	0	0
MAPK7	5598	broad.mit.edu	37	17	19286458	19286458	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:19286458C>T	uc002gvn.2	+	7	2751	c.2365C>T	c.(2365-2367)CCT>TCT	p.P789S	MAPK7_uc002gvo.2_Missense_Mutation_p.P650S|MAPK7_uc002gvq.2_Missense_Mutation_p.P789S|MAPK7_uc002gvp.2_Missense_Mutation_p.P789S|uc010vyt.1_5'Flank	NM_139033	NP_620602	Q13164	MK07_HUMAN	mitogen-activated protein kinase 7 isoform 1	789	May not be required for kinase activity; required to stimulate MEF2C activity (By similarity).				cell cycle|cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					TGGCATGAACCCTGCCGATAT	0.612													24	28					0	0	1	0	0
RNF112	7732	broad.mit.edu	37	17	19317917	19317917	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:19317917C>T	uc010vyw.1	+	9	1151	c.952C>T	c.(952-954)CGT>TGT	p.R318C	RNF112_uc010vyv.1_Missense_Mutation_p.R318C|RNF112_uc010vyx.1_Missense_Mutation_p.R201C	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	318							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						CCTCTTAGTTCGTGACTCATC	0.597													19	26					0	0	1	0	0
RNF112	7732	broad.mit.edu	37	17	19319212	19319212	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:19319212G>A	uc010vyw.1	+	14	1819	c.1620G>A	c.(1618-1620)ACG>ACA	p.T540T	RNF112_uc010vyv.1_Silent_p.T541T	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	540							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						ACTCCTACACGATGCGCTTCT	0.657													17	18					0	0	1	0	0
RNF112	7732	broad.mit.edu	37	17	19319266	19319266	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:19319266C>T	uc010vyw.1	+	14	1873	c.1674C>T	c.(1672-1674)CTC>CTT	p.L558L	RNF112_uc010vyv.1_Silent_p.L559L	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	558							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						GGGCCGGGCTCATGGGCCTGG	0.687													8	4					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	19349464	19349465	+	RNA	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:19349464_19349465CC>TT	uc002gvw.2	-	1		c.714_715GG>AA								Homo sapiens mRNA for ribosomal protein S2, partial cds.																		GGTGAAGTTGCCCAGGGTGGCA	0.559													5	14					0	0	1	0	0
SLC47A1	55244	broad.mit.edu	37	17	19470440	19470440	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:19470440G>A	uc002gvy.1	+	14	1294	c.1208G>A	c.(1207-1209)GGA>GAA	p.G403E	SLC47A1_uc002gvx.2_Missense_Mutation_p.G403E|SLC47A1_uc010vyz.1_Missense_Mutation_p.G380E|SLC47A1_uc010cqp.1_Intron|SLC47A1_uc010cqq.1_Missense_Mutation_p.G208E|SLC47A1_uc010vza.1_Missense_Mutation_p.G115E|SLC47A1_uc010vzb.1_Missense_Mutation_p.G137E|SLC47A1_uc010vzc.1_Missense_Mutation_p.G75E	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	403	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					AGGGGGAGTGGAAATCAGAAG	0.542													65	83					0	0	1	0	0
SLC47A1	55244	broad.mit.edu	37	17	19480671	19480671	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:19480671G>A	uc002gvy.1	+	17	1604	c.1518G>A	c.(1516-1518)ACG>ACA	p.T506T	SLC47A1_uc002gvx.2_Silent_p.T506T|SLC47A1_uc010vyz.1_3'UTR|SLC47A1_uc010cqp.1_Silent_p.T204T|SLC47A1_uc010cqq.1_Silent_p.T252T|SLC47A1_uc010vza.1_Silent_p.T218T|SLC47A1_uc010vzb.1_Silent_p.T181T|SLC47A1_uc010vzc.1_Silent_p.T178T	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	506	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					GAATTTTAACGAACGATGTTG	0.443													22	60					0	0	1	0	0
SLC47A1	55244	broad.mit.edu	37	17	19480832	19480832	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:19480832G>A	uc002gvy.1	+	17	1765	c.1679G>A	c.(1678-1680)GGG>GAG	p.G560E	SLC47A1_uc002gvx.2_Intron|SLC47A1_uc010vyz.1_3'UTR|SLC47A1_uc010cqp.1_Missense_Mutation_p.G258E|SLC47A1_uc010cqq.1_Missense_Mutation_p.G306E|SLC47A1_uc010vza.1_Missense_Mutation_p.G272E|SLC47A1_uc010vzb.1_Missense_Mutation_p.G235E|SLC47A1_uc010vzc.1_Missense_Mutation_p.G232E	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	560	Helical; (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					TTGCTGGTGGGGATTTTAGTG	0.502													41	76					0	0	1	0	0
ALDH3A1	218	broad.mit.edu	37	17	19642357	19642357	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:19642357C>T	uc010cqu.2	-	8	1498	c.1168G>A	c.(1168-1170)GAT>AAT	p.D390N	ALDH3A1_uc010vzd.1_Missense_Mutation_p.D390N|ALDH3A1_uc002gwj.2_Missense_Mutation_p.D390N|ALDH3A1_uc010cqv.2_Missense_Mutation_p.D389N|ALDH3A1_uc002gwk.2_Missense_Mutation_p.D507N|ALDH3A1_uc002gwl.1_Missense_Mutation_p.D317N	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	390					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	ACGATGACATCGTTGGCCGCC	0.632													18	13					0	0	1	0	0
CYTSB	92521	broad.mit.edu	37	17	20135715	20135715	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:20135715C>T	uc002gwq.2	+	7	2493	c.2348C>T	c.(2347-2349)CCT>CTT	p.P783L	CYTSB_uc010cqx.2_Missense_Mutation_p.P783L|CYTSB_uc002gwr.2_Missense_Mutation_p.P783L|CYTSB_uc002gws.2_Missense_Mutation_p.P783L|CYTSB_uc002gwv.2_Missense_Mutation_p.P702L|CYTSB_uc010vzf.1_Missense_Mutation_p.P123L|CYTSB_uc002gww.2_Missense_Mutation_p.P559L|CYTSB_uc002gwt.2_Missense_Mutation_p.P702L|CYTSB_uc002gwu.2_Missense_Mutation_p.P702L	NM_001033553	NP_001028725	Q5M775	CYTSB_HUMAN	spectrin domain with coiled-coils 1 NSP5b3b	783						nucleus					0						AGAGCCGCCCCTCCGTGAGTC	0.612													5	7					0	0	1	0	0
CYTSB	92521	broad.mit.edu	37	17	20149272	20149272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:20149272C>T	uc002gwq.2	+	8	2530	c.2385C>T	c.(2383-2385)GTC>GTT	p.V795V	CYTSB_uc002gws.2_Silent_p.V795V|CYTSB_uc002gwv.2_Silent_p.V714V|CYTSB_uc010vzf.1_Silent_p.V135V|CYTSB_uc002gww.2_Silent_p.V571V	NM_001033553	NP_001028725	Q5M775	CYTSB_HUMAN	spectrin domain with coiled-coils 1 NSP5b3b	795						nucleus					0						CCTCTGAGGTCGATGCTGCTG	0.502													22	38					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20320092	20320092	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:20320092C>T	uc002gwx.2	+	1		c.671C>T								Homo sapiens, clone IMAGE:4938453, mRNA.																		GGGGCTGACCCAGAGGAAGTC	0.473													8	17					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20744410	20744410	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:20744410C>T	uc010crb.1	+	1		c.70C>T								Homo sapiens cDNA clone IMAGE:6269068, partial cds.																		GCTGCCCGCCCTGCCCCGGCC	0.557													10	13					0	0	1	0	0
KCNJ12	3768	broad.mit.edu	37	17	21318838	21318838	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:21318838G>A	uc002gyv.1	+	3	889	c.184G>A	c.(184-186)GAG>AAG	p.E62K		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	62	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	CAACATGGACGAGAAGTCACA	0.592										Prostate(3;0.18)			13	41					0	0	1	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319378	21319378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:21319378G>A	uc002gyv.1	+	3	1429	c.724G>A	c.(724-726)GAG>AAG	p.E242K		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	242	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	CGAGGAGGGCGAGTACATCCC	0.607										Prostate(3;0.18)			6	54					0	0	1	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319497	21319497	+	Silent	SNP	C	T	T	rs139358757	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:21319497C>T	uc002gyv.1	+	3	1548	c.843C>T	c.(841-843)TTC>TTT	p.F281F		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	281	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	GCCCGCTCTTCGGCATCAGCC	0.607										Prostate(3;0.18)			10	66					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	21731166	21731166	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:21731166C>T	uc002gyy.3	+	2	593	c.468C>T	c.(466-468)TTC>TTT	p.F156F						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		TGCAGATCTTCGTGAAGACCC	0.537													28	34					0	0	1	0	0
WSB1	26118	broad.mit.edu	37	17	25630396	25630396	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:25630396C>T	uc002gzd.1	+	3	529	c.213C>T	c.(211-213)CTC>CTT	p.L71L	WSB1_uc010vzy.1_Silent_p.L71L|WSB1_uc010vzz.1_Silent_p.L40L|WSB1_uc010crf.1_Intron|WSB1_uc002gze.1_Intron|WSB1_uc002gzf.1_RNA	NM_015626	NP_056441	Q9Y6I7	WSB1_HUMAN	WD repeat and SOCS box-containing 1 isoform 1	71	WD 1.				intracellular signal transduction	intracellular	protein binding				0	all_cancers(1;2e-13)|all_epithelial(1;4.8e-15)|Lung NSC(42;0.00152)		BRCA - Breast invasive adenocarcinoma(3;0.0152)	UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		ACTCCAGTCTCTTGCATGGCA	0.368													44	65					0	0	1	0	0
KSR1	8844	broad.mit.edu	37	17	25936266	25936266	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:25936266C>T	uc010crg.2	+	17	2236	c.1791C>T	c.(1789-1791)CTC>CTT	p.L597L	KSR1_uc002gzm.2_Silent_p.L376L|KSR1_uc002gzn.2_5'Flank	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	732	Protein kinase.				Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		ACAAAGATCTCAAATCTAAGA	0.498													25	20					0	0	1	0	0
LGALS9	3965	broad.mit.edu	37	17	25967717	25967717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:25967717C>T	uc002gzp.2	+	3	369	c.251C>T	c.(250-252)CCC>CTC	p.P84L	LGALS9_uc002gzq.2_Missense_Mutation_p.P84L|LGALS9_uc002gzr.2_Missense_Mutation_p.P27L|LGALS9_uc010waa.1_Missense_Mutation_p.P27L|LGALS9_uc002gzs.2_Missense_Mutation_p.P84L	NM_009587	NP_033665	O00182	LEG9_HUMAN	galectin-9 isoform long	84	Galectin 1.|Beta-galactoside binding 1.				positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	galactose binding|signal transducer activity				0	Lung NSC(42;0.0103)		BRCA - Breast invasive adenocarcinoma(3;0.0141)	UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		AGCTGGGGGCCCGAGGAGAGG	0.547													49	56					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26085934	26085934	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26085934C>T	uc002gzu.2	-	26	3591	c.3327G>A	c.(3325-3327)CAG>CAA	p.Q1109Q		NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	1109					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	AGTCCTCGACCTGCTCCTCAT	0.607													9	12					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26089961	26089961	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26089961G>A	uc002gzu.2	-	22	2927	c.2663C>T	c.(2662-2664)TCC>TTC	p.S888F		NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	888	FAD-binding FR-type.				arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	CACCCGCAGGGACGGGAACTC	0.572													5	7					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26093564	26093564	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26093564G>A	uc002gzu.2	-	19	2482	c.2218C>T	c.(2218-2220)CGG>TGG	p.R740W		NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	740	FAD-binding FR-type.				arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	AGATTCTGCCGAGATTTGAGC	0.478													29	101					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26096140	26096140	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26096140G>A	uc002gzu.2	-	17	2161	c.1897C>T	c.(1897-1899)CGG>TGG	p.R633W	NOS2_uc010wab.1_Missense_Mutation_p.R598W	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	633	Flavodoxin-like.|FMN (By similarity).				arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	GCGCAGAACCGAGGGTACATG	0.607													4	22					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26108068	26108068	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26108068G>A	uc002gzu.2	-	8	1122	c.858C>T	c.(856-858)TTC>TTT	p.F286F	NOS2_uc010crh.1_Silent_p.F286F|NOS2_uc010wab.1_Silent_p.F286F	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	286					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	GTACCTGAGTGAATTCCACGT	0.647													18	38					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26115882	26115882	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26115882C>T	uc002gzu.2	-	4	535	c.271G>A	c.(271-273)GGC>AGC	p.G91S	NOS2_uc010crh.1_Missense_Mutation_p.G91S|NOS2_uc010wab.1_Missense_Mutation_p.G91S	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	91					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	ATCCCGCTGCCCCAGTTTTTG	0.527													61	74					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26115908	26115908	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26115908G>A	uc002gzu.2	-	4	509	c.245C>T	c.(244-246)CCA>CTA	p.P82L	NOS2_uc010crh.1_Missense_Mutation_p.P82L|NOS2_uc010wab.1_Missense_Mutation_p.P82L	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	82					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	CACATGCCGTGGGGAGGACAA	0.532													61	69					0	0	1	0	0
SLC13A2	9058	broad.mit.edu	37	17	26821441	26821441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26821441C>T	uc002hbh.2	+	9	1286	c.1219C>T	c.(1219-1221)CTC>TTC	p.L407F	SLC13A2_uc010wam.1_Missense_Mutation_p.L363F|SLC13A2_uc010wan.1_Missense_Mutation_p.L456F|SLC13A2_uc010wao.1_Missense_Mutation_p.L364F|SLC13A2_uc002hbi.2_Missense_Mutation_p.L336F	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	407						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CCCTCTTGGCCTCCTCGACTG	0.567											OREG0024276	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	49					0	0	1	0	0
SPAG5	10615	broad.mit.edu	37	17	26918769	26918769	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26918769G>A	uc002hbq.2	-	4	1476	c.1384C>T	c.(1384-1386)CCT>TCT	p.P462S	SGK494_uc010waq.1_Intron	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	462					cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					TCTGGGTGAGGGACAGCCAGC	0.542													35	54					0	0	1	0	0
KIAA0100	9703	broad.mit.edu	37	17	26966471	26966471	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:26966471G>A	uc002hbu.2	-	11	1190	c.1091C>T	c.(1090-1092)ACC>ATC	p.T364I	KIAA0100_uc002hbv.2_Missense_Mutation_p.T364I	NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	364						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					GAGGTCAATGGTGGTCACCTG	0.453													25	22					0	0	1	0	0
DHRS13	147015	broad.mit.edu	37	17	27225649	27225649	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:27225649G>A	uc002hde.3	-	5	1071	c.944C>T	c.(943-945)CCT>CTT	p.P315L	FLOT2_uc002hdc.2_5'Flank|DHRS13_uc002hdd.3_Missense_Mutation_p.P265L|DHRS13_uc010wba.1_Missense_Mutation_p.P234L|uc002hdf.2_RNA	NM_144683	NP_653284	Q6UX07	DHR13_HUMAN	dehydrogenase/reductase (SDR family) member 13	315						extracellular region	binding|oxidoreductase activity				0	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.59e-06)|all cancers(11;9.27e-06)|BRCA - Breast invasive adenocarcinoma(11;5.78e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.0602)			ATCCTCCCCAGGCCCAAGCCC	0.627													8	9					0	0	1	0	0
MYO18A	399687	broad.mit.edu	37	17	27493257	27493257	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:27493257G>A	uc002hdt.1	-	2	860	c.702C>T	c.(700-702)TCC>TCT	p.S234S	MYO18A_uc010csa.1_Silent_p.S234S|MYO18A_uc002hdu.1_Silent_p.S234S	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	234	PDZ.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TGCGCCGCAGGGAGAAGCCAA	0.701													30	44					0	0	1	0	0
TAOK1	57551	broad.mit.edu	37	17	27857437	27857437	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:27857437C>T	uc002hdz.1	+	18	2355	c.2161C>T	c.(2161-2163)CAA>TAA	p.Q721*	TAOK1_uc010wbe.1_Nonsense_Mutation_p.Q573*|TAOK1_uc010wbf.1_Nonsense_Mutation_p.Q721*	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	721					mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			TAAAGAACTCCAAATAAAAAA	0.353													12	13					0	0	1	0	0
ABHD15	116236	broad.mit.edu	37	17	27889807	27889807	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:27889807G>A	uc002hed.1	-	2	1243	c.1179C>T	c.(1177-1179)GGC>GGT	p.G393G		NM_198147	NP_937790	Q6UXT9	ABH15_HUMAN	abhydrolase domain containing 15 precursor	393						extracellular region	carboxylesterase activity				0						GGCGCAGGAAGCCACAGTGGC	0.592													28	34					0	0	1	0	0
GIT1	28964	broad.mit.edu	37	17	27909760	27909760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:27909760G>A	uc002hef.2	-	4	575	c.361C>T	c.(361-363)CCC>TCC	p.P121S	GIT1_uc002heg.2_Missense_Mutation_p.P121S|GIT1_uc010wbg.1_Missense_Mutation_p.P121S|GIT1_uc010csb.1_Missense_Mutation_p.P121S	NM_014030	NP_054749	Q9Y2X7	GIT1_HUMAN	G protein-coupled receptor kinase interactor 1	121	Arf-GAP.			P -> S (in Ref. 1; AAD28046).	regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|focal adhesion	ARF GTPase activator activity|protein binding|zinc ion binding				0				READ - Rectum adenocarcinoma(3;0.0419)|Colorectal(3;0.069)		TCCCGGCAGGGAAGCTTGTGC	0.587													15	21					0	0	1	0	0
ANKRD13B	124930	broad.mit.edu	37	17	27935057	27935057	+	Missense_Mutation	SNP	C	T	T	rs148007819		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:27935057C>T	uc002hei.2	+	3	417	c.304C>T	c.(304-306)CGG>TGG	p.R102W	ANKRD13B_uc002heh.2_Intron|ANKRD13B_uc002hej.2_RNA	NM_152345	NP_689558	Q86YJ7	AN13B_HUMAN	ankyrin repeat domain 13B	102	ANK 2.										0						GCTGGTGCTTCGGTACCGGGA	0.682													14	21					0	0	1	0	0
CORO6	84940	broad.mit.edu	37	17	27943157	27943157	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:27943157G>A	uc002hel.2	-	9	1101	c.1099C>T	c.(1099-1101)CCA>TCA	p.P367S	CORO6_uc002hem.2_Missense_Mutation_p.P133S|CORO6_uc002hen.2_Missense_Mutation_p.P133S	NM_032854	NP_116243	Q6QEF8	CORO6_HUMAN	coronin 6	367					actin cytoskeleton organization	actin cytoskeleton	actin filament binding				0						TCCGGGCCTGGCGTATCCGGG	0.662													18	14					0	0	1	0	0
EFCAB5	374786	broad.mit.edu	37	17	28414151	28414151	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:28414151C>T	uc002het.2	+	19	3842	c.3650C>T	c.(3649-3651)CCT>CTT	p.P1217L	EFCAB5_uc010cse.2_Missense_Mutation_p.P972L|EFCAB5_uc010csf.2_Intron	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	1217							calcium ion binding			ovary(1)|skin(1)	2						CACAAAAATCCTCCTACCATC	0.418													28	32					0	0	1	0	0
SLC6A4	6532	broad.mit.edu	37	17	28534796	28534796	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:28534796C>T	uc002hey.3	-	13	2148	c.1604G>A	c.(1603-1605)TGG>TAG	p.W535*	SLC6A4_uc010csg.2_RNA	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	535					response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	CCTCCAGAACCACCCCGGGCT	0.577													5	41					0	0	1	0	0
SLC6A4	6532	broad.mit.edu	37	17	28537605	28537606	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:28537605_28537606GG>AA	uc002hey.3	-	11	1920_1921	c.1376_1377CC>TT	c.(1375-1377)GCC>GTT	p.A459V	SLC6A4_uc010csg.2_RNA	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	459					response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	CCCGGCGCTTGGCCCAGACGTG	0.589													8	73					0	0	1	0	0
SLC6A4	6532	broad.mit.edu	37	17	28548732	28548732	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:28548732C>T	uc002hey.3	-	3	789	c.245G>A	c.(244-246)TGG>TAG	p.W82*		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	82	Cytoplasmic (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	CTTCTTGCCCCAGGTCTCCCG	0.567													51	61					0	0	1	0	0
CPD	1362	broad.mit.edu	37	17	28788251	28788251	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:28788251C>T	uc002hfb.1	+	18	3567	c.3552C>T	c.(3550-3552)TGC>TGT	p.C1184C	CPD_uc010wbo.1_Silent_p.C937C|CPD_uc010wbp.1_Intron	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	1184	Extracellular (Potential).|Carboxypeptidase-like 3.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						ACACAAGCTGCTGTTACTTTC	0.378													34	48					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29527590	29527590	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:29527590C>T	uc002hgg.2	+	9	1372	c.1039C>T	c.(1039-1041)CAG>TAG	p.Q347*	NF1_uc002hge.1_Nonsense_Mutation_p.Q347*|NF1_uc002hgf.1_Nonsense_Mutation_p.Q347*|NF1_uc002hgh.2_Nonsense_Mutation_p.Q347*|NF1_uc010csn.1_Nonsense_Mutation_p.Q207*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	347					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CCTACTTGTTCAGTCCATGGT	0.348			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			42	62					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29562632	29562632	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:29562632G>T	uc002hgg.2	+	28	4045	c.3712G>T	c.(3712-3714)GAA>TAA	p.E1238*	NF1_uc002hgh.2_Nonsense_Mutation_p.E1238*|NF1_uc010csn.1_Nonsense_Mutation_p.E1098*|NF1_uc002hgi.1_Nonsense_Mutation_p.E271*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1238	Ras-GAP.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TTCTCAGGATGAACTAGCTCG	0.378			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			84	131					4.02937e-33	4.05439e-33	1	1	0
NF1	4763	broad.mit.edu	37	17	29562639	29562639	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:29562639C>T	uc002hgg.2	+	28	4052	c.3719C>T	c.(3718-3720)GCT>GTT	p.A1240V	NF1_uc002hgh.2_Missense_Mutation_p.A1240V|NF1_uc010csn.1_Missense_Mutation_p.A1100V|NF1_uc002hgi.1_Missense_Mutation_p.A273V	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1240	Ras-GAP.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GATGAACTAGCTCGAGTTCTG	0.383			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			17	205					0	0	1	0	0
LRRC37B	114659	broad.mit.edu	37	17	30348996	30348996	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:30348996C>T	uc002hgu.2	+	1	842	c.831C>T	c.(829-831)TCC>TCT	p.S277S	LRRC37B_uc010wbx.1_Silent_p.S195S|LRRC37B_uc010csu.2_Silent_p.S277S	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	277	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				ACATCCAGTCCTCTTCACTCC	0.552													91	85					0	0	1	0	0
RHOT1	55288	broad.mit.edu	37	17	30503006	30503006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:30503006C>T	uc002hgz.2	+	5	487	c.248C>T	c.(247-249)GCC>GTC	p.A83V	RHOT1_uc002hgw.2_Missense_Mutation_p.A83V|RHOT1_uc002hgy.2_Missense_Mutation_p.A83V|RHOT1_uc002hha.2_5'UTR|RHOT1_uc010csv.2_RNA|RHOT1_uc002hgx.2_5'UTR|RHOT1_uc010wby.1_Missense_Mutation_p.A83V|RHOT1_uc002hhb.2_Missense_Mutation_p.A62V|RHOT1_uc002hgv.2_Missense_Mutation_p.A83V	NM_018307	NP_060777	Q8IXI2	MIRO1_HUMAN	ras homolog gene family, member T1 isoform 3	83	Miro 1.|Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(56;0.0255)|Breast(31;0.116)|Ovarian(249;0.182)				ATAGTGTATGCCGTTAACAAC	0.308													7	25					0	0	1	0	0
RHOT1	55288	broad.mit.edu	37	17	30526555	30526555	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:30526555C>T	uc002hgz.2	+	13	1325	c.1086C>T	c.(1084-1086)TTC>TTT	p.F362F	RHOT1_uc002hgw.2_Silent_p.F362F|RHOT1_uc002hgy.2_Silent_p.F362F|RHOT1_uc002hha.2_Silent_p.F235F|RHOT1_uc010csv.2_RNA|RHOT1_uc002hgx.2_Silent_p.F235F|RHOT1_uc010wby.1_Silent_p.F362F|RHOT1_uc002hhb.2_Silent_p.F341F|RHOT1_uc002hgv.2_Silent_p.F362F	NM_018307	NP_060777	Q8IXI2	MIRO1_HUMAN	ras homolog gene family, member T1 isoform 3	362	Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(56;0.0255)|Breast(31;0.116)|Ovarian(249;0.182)				ACCAGGGATTCCTTTCCCAGT	0.378													29	42					0	0	1	0	0
RHBDL3	162494	broad.mit.edu	37	17	30648242	30648243	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:30648242_30648243CC>TT	uc002hhe.1	+	9	1223_1224	c.1209_1210CC>TT	c.(1207-1212)CCCCCC>CCTTCC	p.P404S	RHBDL3_uc010csw.1_Missense_Mutation_p.P396S|RHBDL3_uc010csx.1_Missense_Mutation_p.P370F|RHBDL3_uc010csy.1_Missense_Mutation_p.P306S|RHBDL3_uc002hhf.1_Missense_Mutation_p.P306S	NM_138328	NP_612201	P58872	RHBL3_HUMAN	rhomboid protease 3	404					proteolysis	integral to membrane	calcium ion binding|serine-type endopeptidase activity			ovary(1)	1		Breast(31;0.116)|Ovarian(249;0.182)				TGCCGCCTCCCCCCTGAGGGCT	0.599													20	19					0	0	1	0	0
TMEM98	26022	broad.mit.edu	37	17	31261321	31261321	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:31261321C>T	uc002hhq.2	+	5	734	c.276C>T	c.(274-276)TCC>TCT	p.S92S	TMEM98_uc002hhr.2_Silent_p.S92S	NM_015544	NP_056359	Q9Y2Y6	TMM98_HUMAN	transmembrane protein 98	92						endoplasmic reticulum|integral to membrane					0		Ovarian(249;0.182)|Breast(31;0.244)	BRCA - Breast invasive adenocarcinoma(9;0.0769)			GTCTCATGTCCCACTGCATTG	0.537													7	56					0	0	1	0	0
SPACA3	124912	broad.mit.edu	37	17	31324017	31324017	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:31324017C>T	uc002hhs.1	+	3	575	c.500C>T	c.(499-501)TCA>TTA	p.S167L	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	167	Extracellular (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			ATGTACTGCTCAGGTAGCTGG	0.592													28	44					0	0	1	0	0
ACCN1	40	broad.mit.edu	37	17	32483179	32483179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:32483179C>T	uc002hhu.2	-	1	647	c.373G>A	c.(373-375)GAC>AAC	p.D125N		NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	125	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	AGATGGGGGTCCGGGATCTGC	0.597													28	45					0	0	1	0	0
ACCN1	40	broad.mit.edu	37	17	32483453	32483453	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:32483453G>A	uc002hhu.2	-	1	373	c.99C>T	c.(97-99)TTC>TTT	p.F33F		NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	33	Cytoplasmic (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	GCCCATACACGAAGATGTGGC	0.612													11	16					0	0	1	0	0
CCL8	6355	broad.mit.edu	37	17	32647341	32647341	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:32647341C>T	uc002hib.2	+	2	585	c.130C>T	c.(130-132)CCT>TCT	p.P44S		NM_005623	NP_005614	P80075	CCL8_HUMAN	small inducible cytokine A8 precursor	44					calcium ion transport|cell-cell signaling|chemotaxis|exocytosis|immune response|inflammatory response|response to virus	extracellular space	chemokine activity|heparin binding|signal transducer activity				0		Ovarian(249;0.0443)|Breast(31;0.151)				TAGGAAAATTCCTATCCAGAG	0.443													9	45					0	0	1	0	0
TMEM132E	124842	broad.mit.edu	37	17	32954042	32954042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:32954042C>T	uc002hif.2	+	3	1022	c.694C>T	c.(694-696)CCC>TCC	p.P232S		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	232	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		CTCCTCCTCGCCCTCCAGCCC	0.597													13	49					0	0	1	0	0
CCT6B	10693	broad.mit.edu	37	17	33266229	33266229	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33266229G>A	uc002hig.2	-	10	1280	c.1186C>T	c.(1186-1188)CGT>TGT	p.R396C	CCT6B_uc010ctg.2_Missense_Mutation_p.R359C|CCT6B_uc010wcc.1_Missense_Mutation_p.R351C	NM_006584	NP_006575	Q92526	TCPW_HUMAN	chaperonin containing TCP1, subunit 6B	396					chaperone-mediated protein complex assembly|protein folding|spermatogenesis	cytoplasm	ATP binding|protein transporter activity|unfolded protein binding			pancreas(1)	1		Ovarian(249;0.17)				TTGATAGCACGAAGTCCATCT	0.318													61	94					0	0	1	0	0
UNC45B	146862	broad.mit.edu	37	17	33495271	33495271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33495271C>T	uc002hja.2	+	10	1440	c.1343C>T	c.(1342-1344)GCC>GTC	p.A448V	UNC45B_uc002hjb.2_Missense_Mutation_p.A448V|UNC45B_uc002hjc.2_Missense_Mutation_p.A448V|UNC45B_uc010cto.2_Missense_Mutation_p.A448V	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	448					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				CTCATCCATGCCTCCACGAAG	0.557													22	18					0	0	1	0	0
UNC45B	146862	broad.mit.edu	37	17	33507692	33507692	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33507692G>A	uc002hja.2	+	18	2473	c.2376G>A	c.(2374-2376)AAG>AAA	p.K792K	UNC45B_uc002hjb.2_Silent_p.K790K|UNC45B_uc002hjc.2_Silent_p.K790K|UNC45B_uc010cto.2_Silent_p.K711K	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	792					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				TGCTCCACAAGGAGGTGAGGC	0.602													11	23					0	0	1	0	0
AMAC1	146861	broad.mit.edu	37	17	33520385	33520385	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33520385C>T	uc002hjd.2	-	1	1028	c.942G>A	c.(940-942)GGG>GGA	p.G314G		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	314	DUF6 2.|Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CCAGCACAACCCCTGCCGCCA	0.562													47	74					0	0	1	0	0
AMAC1	146861	broad.mit.edu	37	17	33520541	33520541	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33520541G>A	uc002hjd.2	-	1	872	c.786C>T	c.(784-786)CTC>CTT	p.L262L		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	262	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		AGACCAAGGCGAGGATCCCCA	0.627													29	70					0	0	1	0	0
AMAC1	146861	broad.mit.edu	37	17	33521168	33521168	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33521168G>A	uc002hjd.2	-	1	245	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	53	DUF6 1.|Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		GGGGGCCCACGAAGCCAGCAG	0.667													30	38					0	0	1	0	0
SLFN11	91607	broad.mit.edu	37	17	33690158	33690158	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33690158G>A	uc010ctp.2	-	4	1111	c.669C>T	c.(667-669)TTC>TTT	p.F223F	SLFN11_uc010ctq.2_Silent_p.F223F|SLFN11_uc002hjh.3_Silent_p.F223F|SLFN11_uc002hjg.3_Silent_p.F223F|SLFN11_uc010ctr.2_Silent_p.F223F	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	223						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CATATTCTTGGAAGTGTTTTG	0.378													24	128					0	0	1	0	0
SLFN11	91607	broad.mit.edu	37	17	33690487	33690487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33690487G>A	uc010ctp.2	-	4	782	c.340C>T	c.(340-342)CCT>TCT	p.P114S	SLFN11_uc010ctq.2_Missense_Mutation_p.P114S|SLFN11_uc002hjh.3_Missense_Mutation_p.P114S|SLFN11_uc002hjg.3_Missense_Mutation_p.P114S|SLFN11_uc010ctr.2_Missense_Mutation_p.P114S	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	114						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TCAGGGAAAGGGCCACTGCTC	0.458													11	56					0	0	1	0	0
SLFN11	91607	broad.mit.edu	37	17	33690528	33690528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33690528C>T	uc010ctp.2	-	4	741	c.299G>A	c.(298-300)GGA>GAA	p.G100E	SLFN11_uc010ctq.2_Missense_Mutation_p.G100E|SLFN11_uc002hjh.3_Missense_Mutation_p.G100E|SLFN11_uc002hjg.3_Missense_Mutation_p.G100E|SLFN11_uc010ctr.2_Missense_Mutation_p.G100E	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	100						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AAAACACCTTCCTTGTTGCTT	0.458													19	58					0	0	1	0	0
SLFN11	91607	broad.mit.edu	37	17	33690654	33690654	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33690654C>T	uc010ctp.2	-	4	615	c.173G>A	c.(172-174)GGA>GAA	p.G58E	SLFN11_uc010ctq.2_Missense_Mutation_p.G58E|SLFN11_uc002hjh.3_Missense_Mutation_p.G58E|SLFN11_uc002hjg.3_Missense_Mutation_p.G58E|SLFN11_uc010ctr.2_Missense_Mutation_p.G58E	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	58						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AATCACTCCTCCTCCTGAGTT	0.448													60	116					0	0	1	0	0
SLFN13	146857	broad.mit.edu	37	17	33768033	33768033	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:33768033C>T	uc002hjk.1	-	4	2605	c.2275G>A	c.(2275-2277)GGG>AGG	p.G759R	SLFN13_uc010wch.1_Missense_Mutation_p.G759R|SLFN13_uc002hjl.2_Missense_Mutation_p.G759R|SLFN13_uc010ctt.2_Missense_Mutation_p.G441R|SLFN13_uc002hjm.2_Missense_Mutation_p.G428R	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	759						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GCCAGATACCCATGGGGGATA	0.388													41	64					0	0	1	0	0
RASL10B	91608	broad.mit.edu	37	17	34067503	34067503	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:34067503G>A	uc002hju.2	+	3	658	c.292G>A	c.(292-294)GAC>AAC	p.D98N		NM_033315	NP_201572	Q96S79	RSLAB_HUMAN	RAS-like, family 10, member B precursor	98	Small GTPase-like.				small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			lung(2)|breast(2)	4				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTGCTGCTTTGACAGCTTTGA	0.582													33	57					0	0	1	0	0
RASL10B	91608	broad.mit.edu	37	17	34068188	34068188	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:34068188C>T	uc002hju.2	+	4	842	c.476C>T	c.(475-477)TCG>TTG	p.S159L		NM_033315	NP_201572	Q96S79	RSLAB_HUMAN	RAS-like, family 10, member B precursor	159	Small GTPase-like.				small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			lung(2)|breast(2)	4				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GTGGAATGCTCGGCCAAGTAC	0.647													17	26					0	0	1	0	0
GAS2L2	246176	broad.mit.edu	37	17	34079764	34079764	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:34079764C>T	uc002hjv.1	-	1	134	c.106G>A	c.(106-108)GAA>AAA	p.E36K		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	36	CH.				cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GCCAGGTCTTCCTTCATGGCC	0.632													31	45					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	34235552	34235552	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:34235552G>A	uc010ctx.1	-	1		c.1402C>T								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		TTTGGGCTGAGATCAATACAT	0.478													22	44					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	34235964	34235964	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:34235964G>A	uc010ctx.1	-	1		c.990C>T								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		TTTGGATGCTGAGCCTGGTTC	0.478													26	38					0	0	1	0	0
CCL15	6359	broad.mit.edu	37	17	34328476	34328476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:34328476G>A	uc010wcu.1	-	1	625	c.56C>T	c.(55-57)TCC>TTC	p.S19F	CCL14-CCL15_uc010wcs.1_RNA|CCL14-CCL15_uc010wct.1_RNA	NM_032965	NP_116741	Q16663	CCL15_HUMAN	chemokine (C-C motif) ligand 15 precursor	19					cell-cell signaling|cellular calcium ion homeostasis|immune response	extracellular space	chemoattractant activity|chemokine activity|heparin binding|signal transducer activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTGGGCCTGGGATCCAAGGAC	0.587													6	40					0	0	1	0	0
MYO19	80179	broad.mit.edu	37	17	34863731	34863731	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:34863731G>A	uc010wcy.1	-	16	2256	c.1264C>T	c.(1264-1266)CCT>TCT	p.P422S	MYO19_uc002hmw.2_Missense_Mutation_p.P422S|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	422	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CTGTTGTCAGGAAATGATTCA	0.537													7	28					0	0	1	0	0
MRM1	79922	broad.mit.edu	37	17	34964684	34964684	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:34964684C>T	uc002hne.2	+	5	1110	c.895C>T	c.(895-897)CTT>TTT	p.L299F	MRM1_uc002hnf.2_Missense_Mutation_p.L104F	NM_024864	NP_079140	Q6IN84	MRM1_HUMAN	mitochondrial rRNA methyltransferase 1 homolog	299					RNA processing	mitochondrion	RNA binding|RNA methyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		TGCAGGAATTCTTCTTCACTC	0.542													82	108					0	0	1	0	0
MRM1	79922	broad.mit.edu	37	17	34964690	34964690	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:34964690C>T	uc002hne.2	+	5	1116	c.901C>T	c.(901-903)CAC>TAC	p.H301Y	MRM1_uc002hnf.2_Missense_Mutation_p.H106Y	NM_024864	NP_079140	Q6IN84	MRM1_HUMAN	mitochondrial rRNA methyltransferase 1 homolog	301					RNA processing	mitochondrion	RNA binding|RNA methyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		AATTCTTCTTCACTCCATTTG	0.542													81	106					0	0	1	0	0
LHX1	3975	broad.mit.edu	37	17	35297980	35297980	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:35297980G>A	uc002hnh.1	+	3	1467	c.471G>A	c.(469-471)GAG>GAA	p.E157E	LHX1_uc010cux.1_Silent_p.E65E	NM_005568	NP_005559	P48742	LHX1_HUMAN	LIM homeobox protein 1	157					cerebellar Purkinje cell differentiation|cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation|cervix development|comma-shaped body morphogenesis|dorsal/ventral pattern formation|ectoderm formation|embryonic pattern specification|embryonic retina morphogenesis in camera-type eye|embryonic viscerocranium morphogenesis|endoderm formation|forebrain regionalization|head development|motor axon guidance|negative regulation of transcription, DNA-dependent|nephric duct morphogenesis|nephron tubule epithelial cell differentiation|neuron migration|oviduct epithelium development|paramesonephric duct development|positive regulation of anterior head development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of transcription, DNA-dependent|post-embryonic development|primitive streak formation|renal vesicle morphogenesis|retina layer formation|S-shaped body morphogenesis|spinal cord association neuron differentiation|transcription from RNA polymerase II promoter|ureteric bud development|uterine epithelium development|vagina development	nucleus|protein complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(25;0.00607)				AGGACTCGGAGAGCGCCAACG	0.632													19	34					0	0	1	0	0
LHX1	3975	broad.mit.edu	37	17	35300245	35300245	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:35300245C>T	uc002hnh.1	+	5	2034	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I		NM_005568	NP_005559	P48742	LHX1_HUMAN	LIM homeobox protein 1	346					cerebellar Purkinje cell differentiation|cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation|cervix development|comma-shaped body morphogenesis|dorsal/ventral pattern formation|ectoderm formation|embryonic pattern specification|embryonic retina morphogenesis in camera-type eye|embryonic viscerocranium morphogenesis|endoderm formation|forebrain regionalization|head development|motor axon guidance|negative regulation of transcription, DNA-dependent|nephric duct morphogenesis|nephron tubule epithelial cell differentiation|neuron migration|oviduct epithelium development|paramesonephric duct development|positive regulation of anterior head development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of transcription, DNA-dependent|post-embryonic development|primitive streak formation|renal vesicle morphogenesis|retina layer formation|S-shaped body morphogenesis|spinal cord association neuron differentiation|transcription from RNA polymerase II promoter|ureteric bud development|uterine epithelium development|vagina development	nucleus|protein complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(25;0.00607)				TTACCGACATCCTGGCGCACC	0.741													6	6					0	0	1	0	0
ACACA	31	broad.mit.edu	37	17	35631136	35631136	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:35631136G>A	uc002hnm.2	-	9	1036	c.845C>T	c.(844-846)CCC>CTC	p.P282L	ACACA_uc002hnk.2_Missense_Mutation_p.P204L|ACACA_uc002hnl.2_Missense_Mutation_p.P224L|ACACA_uc002hnn.2_Missense_Mutation_p.P282L|ACACA_uc002hno.2_Missense_Mutation_p.P319L|ACACA_uc010cuz.2_Missense_Mutation_p.P282L|ACACA_uc002hnq.2_Missense_Mutation_p.P204L	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	282	Biotin carboxylation.|ATP-grasp.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TAGCTCCTGGGGAACATTTAA	0.413													38	65					0	0	1	0	0
TBC1D3	729873	broad.mit.edu	37	17	36288274	36288274	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:36288274G>A	uc002hoo.2	+	6	517	c.360G>A	c.(358-360)ATG>ATA	p.M120I	TBC1D3_uc002hop.2_RNA|TBC1D3_uc010wdj.1_Missense_Mutation_p.M40I|TBC1D3_uc010cvf.1_Missense_Mutation_p.M120I|TBC1D3_uc002hoq.2_Missense_Mutation_p.M120I|TBC1D3_uc010wdk.1_Missense_Mutation_p.M181I|uc002hpl.2_5'Flank|uc002hor.2_5'Flank	NM_032258	NP_115634	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3F	120	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTGAGGAAATGAAGTTGAAAA	0.557													63	588					0	0	1	0	0
TBC1D3	729873	broad.mit.edu	37	17	36375119	36375119	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:36375119G>A	uc010wdn.1	-	1		c.59C>T			uc002hpx.2_RNA			Q8IZP1	TBC3A_HUMAN	Homo sapiens TBC1D3 mRNA for TBC1 domain family, member 3, complete cds.							intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GAGTACTAGGGAAAGACAAGG	0.348													6	42					0	0	1	0	0
SOCS7	30837	broad.mit.edu	37	17	36521282	36521282	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:36521282C>T	uc002hqa.2	+	4	1173	c.1050C>T	c.(1048-1050)CCC>CCT	p.P350P	SOCS7_uc010cvl.2_Intron|SOCS7_uc002hqb.2_RNA	NM_014598	NP_055413	O14512	SOCS7_HUMAN	suppressor of cytokine signaling 7	350	Mediates interaction with SORBS3.|Poly-Pro.				intracellular signal transduction|negative regulation of signal transduction|regulation of growth	cytoplasm|nucleus|plasma membrane	protein binding|SH3 domain binding			skin(1)	1	Breast(7;3.47e-17)					CTCCTCCACCCCATGCCCCAG	0.493													13	20					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	37187885	37187885	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37187885G>A	uc002hrd.1	+	1		c.1727G>A								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		TTTGGATCTGGAACTTACCTT	0.488													29	44					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	37187987	37187987	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37187987C>T	uc002hrd.1	+	1		c.1829C>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		GGTTGTAGCTCAACCTCCTGT	0.498													10	24					0	0	1	0	0
PLXDC1	57125	broad.mit.edu	37	17	37224179	37224179	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37224179G>A	uc002hrg.2	-	14	1629	c.1417C>T	c.(1417-1419)CGC>TGC	p.R473C	uc002hre.1_Intron|uc002hrf.1_Intron|PLXDC1_uc010cvr.1_Missense_Mutation_p.R169C|PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	473	Cytoplasmic (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						GGGTGGCTGCGAAACTTCATG	0.617													21	40					0	0	1	0	0
STAC2	342667	broad.mit.edu	37	17	37374290	37374290	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37374290G>A	uc002hrs.2	-	2	446	c.227C>T	c.(226-228)CCT>CTT	p.P76L	STAC2_uc010cvt.2_Intron	NM_198993	NP_945344	Q6ZMT1	STAC2_HUMAN	SH3 and cysteine rich domain 2	76	Pro-rich.				intracellular signal transduction		metal ion binding			pancreas(1)	1						TGGGGAGGGAGGGGGCAGTGG	0.667													4	7					0	0	1	0	0
MED1	5469	broad.mit.edu	37	17	37580070	37580070	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37580070G>A	uc002hrv.3	-	12	1068	c.856C>T	c.(856-858)CCT>TCT	p.P286S	MED1_uc010wee.1_Missense_Mutation_p.P114S|MED1_uc002hru.2_Missense_Mutation_p.P286S	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	286	Interaction with ESR1.|Interaction with the Mediator complex.|Interaction with the Mediator complex and THRA.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		GAGAAGGAAGGGGTCCTTCAA	0.363										HNSCC(31;0.082)			28	29					0	0	1	0	0
CDK12	51755	broad.mit.edu	37	17	37673727	37673727	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37673727C>T	uc010cvv.2	+	10	3467	c.2881C>T	c.(2881-2883)CCT>TCT	p.P961S	CDK12_uc010wef.1_Missense_Mutation_p.P960S|CDK12_uc002hrw.3_Missense_Mutation_p.P961S	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	961	Protein kinase.				mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						AGCTGTGTGGCCTGATGTTAT	0.448										TCGA Ovarian(9;0.13)			53	114					0	0	1	0	0
PNMT	5409	broad.mit.edu	37	17	37826205	37826205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37826205G>A	uc002hsi.1	+	3	634	c.412G>A	c.(412-414)GAA>AAA	p.E138K		NM_002686	NP_002677	P11086	PNMT_HUMAN	phenylethanolamine N-methyltransferase	138					catecholamine biosynthetic process|hormone biosynthetic process	cytosol	phenylethanolamine N-methyltransferase activity			ovary(1)	1	all_cancers(6;6.59e-85)|all_epithelial(6;2.89e-103)|Breast(7;1.05e-86)|Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;3.87e-45)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CCTGCACAGGGAATGCTGGCA	0.652													8	51					0	0	1	0	0
PGAP3	93210	broad.mit.edu	37	17	37844115	37844115	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37844115G>A	uc002hsj.2	-	1	196	c.153C>T	c.(151-153)TCC>TCT	p.S51S	ERBB2_uc002hsm.2_5'Flank|ERBB2_uc010cwa.2_5'Flank|PGAP3_uc010wej.1_Silent_p.S51S|PGAP3_uc002hsk.2_Silent_p.S51S|PGAP3_uc010cvz.2_Silent_p.S51S|ERBB2_uc002hsl.2_5'Flank	NM_033419	NP_219487	Q96FM1	PGAP3_HUMAN	per1-like domain containing 1 precursor	51	Lumenal (Potential).				GPI anchor biosynthetic process	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	hydrolase activity, acting on ester bonds			upper_aerodigestive_tract(1)	1						TTGGCTGGCGGGAGCGGAAGT	0.652													4	6					0	0	1	0	0
ERBB2	2064	broad.mit.edu	37	17	37871608	37871608	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37871608C>T	uc002hso.2	+	10	1456	c.1218C>T	c.(1216-1218)ATC>ATT	p.I406I	ERBB2_uc002hsm.2_Silent_p.I376I|ERBB2_uc010cwa.2_Silent_p.I391I|ERBB2_uc002hsp.2_Silent_p.I209I|ERBB2_uc010cwb.2_Silent_p.I406I|ERBB2_uc010wek.1_Silent_p.I130I|ERBB2_uc002hsl.2_Silent_p.I376I	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	406	Extracellular (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	TGGAAGAGATCACAGGTGGGC	0.592		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			14	24					0	0	1	0	0
GRB7	2886	broad.mit.edu	37	17	37898852	37898852	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37898852C>T	uc002hsr.2	+	3	439	c.189C>T	c.(187-189)TCC>TCT	p.S63S	GRB7_uc002hss.2_Silent_p.S63S|GRB7_uc010cwc.2_Silent_p.S63S|GRB7_uc002hst.2_Silent_p.S63S	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	63					blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GTGCCACCTCCCTCCCCTCTA	0.627													63	90					0	0	1	0	0
GRB7	2886	broad.mit.edu	37	17	37898880	37898880	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37898880G>A	uc002hsr.2	+	3	467	c.217G>A	c.(217-219)GAG>AAG	p.E73K	GRB7_uc002hss.2_Missense_Mutation_p.E73K|GRB7_uc010cwc.2_Missense_Mutation_p.E73K|GRB7_uc002hst.2_Missense_Mutation_p.E73K	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	73					blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CCCCTTCCCTGAGCTCTGCAG	0.637													33	96					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37922226	37922226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37922226C>T	uc002hsu.2	-	8	1409	c.1347G>A	c.(1345-1347)ATG>ATA	p.M449I	IKZF3_uc002htd.2_Missense_Mutation_p.M415I|IKZF3_uc010cwd.2_Missense_Mutation_p.M306I|IKZF3_uc002hsv.2_Missense_Mutation_p.M376I|IKZF3_uc010cwe.2_Missense_Mutation_p.M315I|IKZF3_uc010cwf.2_Missense_Mutation_p.M267I|IKZF3_uc010cwg.2_Missense_Mutation_p.M228I|IKZF3_uc002hsw.2_Missense_Mutation_p.M410I|IKZF3_uc002hsx.2_Missense_Mutation_p.M393I|IKZF3_uc002hsy.2_Missense_Mutation_p.M410I|IKZF3_uc002hsz.2_Missense_Mutation_p.M354I|IKZF3_uc002hta.2_Missense_Mutation_p.M371I|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.M362I|IKZF3_uc002htc.2_Missense_Mutation_p.M202I|IKZF3_uc010wel.1_Missense_Mutation_p.M202I	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	449					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GATACACATCCATCACCTCCC	0.557													57	66					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37922608	37922608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:37922608G>A	uc002hsu.2	-	8	1027	c.965C>T	c.(964-966)CCC>CTC	p.P322L	IKZF3_uc002htd.2_Missense_Mutation_p.P288L|IKZF3_uc010cwd.2_Missense_Mutation_p.P179L|IKZF3_uc002hsv.2_Missense_Mutation_p.P249L|IKZF3_uc010cwe.2_Missense_Mutation_p.P188L|IKZF3_uc010cwf.2_Missense_Mutation_p.P140L|IKZF3_uc010cwg.2_Missense_Mutation_p.P101L|IKZF3_uc002hsw.2_Missense_Mutation_p.P283L|IKZF3_uc002hsx.2_Missense_Mutation_p.P266L|IKZF3_uc002hsy.2_Missense_Mutation_p.P283L|IKZF3_uc002hsz.2_Missense_Mutation_p.P227L|IKZF3_uc002hta.2_Missense_Mutation_p.P244L|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.P235L|IKZF3_uc002htc.2_Missense_Mutation_p.P75L|IKZF3_uc010wel.1_Missense_Mutation_p.P75L	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	322					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CTGGACCAAGGGGCGCAGGGC	0.557													31	39					0	0	1	0	0
GSDMB	55876	broad.mit.edu	37	17	38062518	38062518	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38062518G>A	uc010cwj.2	-	7	739	c.734C>T	c.(733-735)TCT>TTT	p.S245F	GSDMB_uc010cwi.2_5'UTR|GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Missense_Mutation_p.S223F|GSDMB_uc002hth.2_Missense_Mutation_p.S232F|GSDMB_uc010wem.1_Missense_Mutation_p.S236F	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	240						cytoplasm				breast(1)|pancreas(1)	2						CGAACCCAAAGACTTTCCTGT	0.473													27	38					0	0	1	0	0
CSF3	1440	broad.mit.edu	37	17	38172548	38172548	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38172548C>T	uc002htp.2	+	3	307	c.267C>T	c.(265-267)ATC>ATT	p.I89I	CSF3_uc002hto.2_Silent_p.I86I|CSF3_uc002htq.2_Silent_p.I82I|CSF3_uc010wep.1_Intron	NM_000759	NP_000750	P09919	CSF3_HUMAN	colony stimulating factor 3 isoform a precursor	89					cytokine-mediated signaling pathway|granulocyte differentiation|immune response|positive regulation of cell proliferation	extracellular space	cytokine activity|enzyme binding|granulocyte colony-stimulating factor receptor binding|growth factor activity			ovary(1)	1	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	CTCTGGGCATCCCCTGGGCTC	0.627													5	5					0	0	1	0	0
MED24	9862	broad.mit.edu	37	17	38183162	38183162	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38183162G>A	uc002htt.2	-	17	1969	c.1656C>T	c.(1654-1656)ACC>ACT	p.T552T	MED24_uc010wes.1_Silent_p.T412T|MED24_uc010wet.1_Intron|MED24_uc002hts.2_Silent_p.T577T|MED24_uc002htu.2_Silent_p.T539T|MED24_uc010cwn.2_Silent_p.T539T|MED24_uc010weu.1_Silent_p.T462T|MED24_uc010wev.1_Silent_p.T502T|MED24_uc010wew.1_Silent_p.T493T|MED24_uc010wex.1_Silent_p.T257T|SNORD124_uc010wey.1_5'Flank	NM_014815	NP_055630	O75448	MED24_HUMAN	mediator complex subunit 24 isoform 1	552					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1	Colorectal(19;0.000442)					ACTCCACTTTGGTGGAGTCGG	0.642											OREG0024386	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	11					0	0	1	0	0
CASC3	22794	broad.mit.edu	37	17	38319978	38319978	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38319978A>T	uc010cwt.1	+	7	1325	c.1030A>T	c.(1030-1032)AAG>TAG	p.K344*	CASC3_uc010cws.1_Nonsense_Mutation_p.K344*|CASC3_uc002hue.2_Nonsense_Mutation_p.K344*	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	344					mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						TGAGACTGTTAAGCATGAGAT	0.547													85	90					0	0	1	0	0
CASC3	22794	broad.mit.edu	37	17	38320156	38320157	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38320156_38320157CC>TT	uc010cwt.1	+	7	1503_1504	c.1208_1209CC>TT	c.(1207-1209)TCC>TTT	p.S403F	CASC3_uc010cws.1_Missense_Mutation_p.S403F|CASC3_uc002hue.2_Missense_Mutation_p.S403F	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	403	Necessary for localization in cytoplasmic stress granules.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						GAGAAGAAATCCTATTCCCGGG	0.569													19	119					0	0	1	0	0
TOP2A	7153	broad.mit.edu	37	17	38557331	38557331	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38557331G>A	uc002huq.2	-	21	2561	c.2435C>T	c.(2434-2436)TCT>TTT	p.S812F		NM_001067	NP_001058	P11388	TOP2A_HUMAN	DNA topoisomerase II, alpha isozyme	812					apoptotic chromosome condensation|DNA ligation|DNA repair|DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|phosphatidylinositol-mediated signaling|positive regulation of apoptosis|positive regulation of retroviral genome replication|resolution of meiotic recombination intermediates|sister chromatid segregation	cytoplasm|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|drug binding|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity|ubiquitin binding			ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00183)		Amsacrine(DB00276)|Ciprofloxacin(DB00537)|Dexrazoxane(DB00380)|Doxorubicin(DB00997)|Enoxacin(DB00467)|Epirubicin(DB00445)|Etoposide(DB00773)|Fleroxacin(DB04576)|Gatifloxacin(DB01044)|Idarubicin(DB01177)|Levofloxacin(DB01137)|Lomefloxacin(DB00978)|Lucanthone(DB04967)|Mitoxantrone(DB01204)|Moxifloxacin(DB00218)|Norfloxacin(DB01059)|Ofloxacin(DB01165)|Pefloxacin(DB00487)|Podofilox(DB01179)|Sparfloxacin(DB01208)|Teniposide(DB00444)|Trovafloxacin(DB00685)|Valrubicin(DB00385)	TCGAGCCAAAGAGCTAAAGAA	0.308													22	18					0	0	1	0	0
IGFBP4	3487	broad.mit.edu	37	17	38609376	38609376	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38609376G>A	uc002hus.2	+	2	801	c.489G>A	c.(487-489)CGG>CGA	p.R163R		NM_001552	NP_001543	P22692	IBP4_HUMAN	insulin-like growth factor binding protein 4	163					DNA metabolic process|signal transduction|skeletal system development						0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			GGGCGCCCCGGGAGGATGCCC	0.617													16	16					0	0	1	0	0
KRT222	125113	broad.mit.edu	37	17	38818217	38818217	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38818217C>T	uc002hvc.2	-	2	241	c.176G>A	c.(175-177)CGA>CAA	p.R59Q	KRT222_uc010wfk.1_RNA|KRT222_uc002hvb.2_Missense_Mutation_p.R19Q|KRT222_uc010cxc.2_Missense_Mutation_p.R19Q	NM_152349	NP_689562	Q8N1A0	KT222_HUMAN	truncated type I keratin KA21	59	Potential.					intermediate filament	structural molecule activity			central_nervous_system(1)|skin(1)	2						CCACTGGCGTCGGGCCTCCTT	0.468													92	116					0	0	1	0	0
KRT27	342574	broad.mit.edu	37	17	38935980	38935980	+	Missense_Mutation	SNP	C	A	A	rs76225348	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38935980C>A	uc002hvg.2	-	4	859	c.818G>T	c.(817-819)AGG>ATG	p.R273M		NM_181537	NP_853515	Q7Z3Y8	K1C27_HUMAN	keratin 27	273	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.000812)				CTCCGCGTCCCTGCGGTTCTG	0.642													11	20					2.27111e-07	2.2761e-07	1	1	0
KRT28	162605	broad.mit.edu	37	17	38953243	38953243	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:38953243G>A	uc002hvh.1	-	5	969	c.903C>T	c.(901-903)TTC>TTT	p.F301F		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	301	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				GGCTCCGGGCGAAAGTGGCTG	0.657													22	50					0	0	1	0	0
KRT23	25984	broad.mit.edu	37	17	39092585	39092585	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39092585G>A	uc002hvm.1	-	2	860	c.271C>T	c.(271-273)CGC>TGC	p.R91C	KRT23_uc010wfl.1_Intron|KRT23_uc010cxf.1_Intron|KRT23_uc010cxg.2_Missense_Mutation_p.R91C|KRT23_uc002hvn.1_Missense_Mutation_p.R91C	NM_015515	NP_056330	Q9C075	K1C23_HUMAN	keratin 23	91	Rod.|Coil 1A.					intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)|Ovarian(249;0.15)				TCCAGGGCGCGAACCTTCTCC	0.557													55	98					0	0	1	0	0
KRT39	390792	broad.mit.edu	37	17	39116746	39116746	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39116746G>A	uc002hvo.1	-	6	1040	c.1004C>T	c.(1003-1005)TCC>TTC	p.S335F	KRT39_uc010wfm.1_Missense_Mutation_p.S68F	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	335	Coil 2.|Rod.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				GCACTCTTGGGAATCTCTCTA	0.463													24	85					0	0	1	0	0
KRT39	390792	broad.mit.edu	37	17	39118816	39118816	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39118816C>T	uc002hvo.1	-	4	745	c.709_splice	c.e4-1	p.E237_splice	KRT39_uc010wfm.1_Splice_Site	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35							intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				AATTGATTTCCTAAGGAAAGA	0.403													34	73					0	0	1	0	0
KRT39	390792	broad.mit.edu	37	17	39122681	39122681	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39122681T>A	uc002hvo.1	-	1	464	c.428A>T	c.(427-429)TAC>TTC	p.Y143F	KRT39_uc010wfm.1_5'UTR	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	143	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				GTAAGACAGGTAATCAGGACA	0.413													46	74					0	0	1	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240674	39240674	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39240674G>A	uc010wfn.1	+	1	216	c.216G>A	c.(214-216)ACG>ACA	p.T72T		NM_033061	NP_149050			keratin associated protein 4-7												0						GCTGTGAGACGACctgctgcc	0.338													13	31					0	0	1	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274505	39274505	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39274505C>T	uc002hvz.2	-	1	102	c.63G>A	c.(61-63)CAG>CAA	p.Q21Q		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	21	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCAGGTCTCCTGGCAGAGGT	0.612													10	29					0	0	1	0	0
KRTAP9-4	85280	broad.mit.edu	37	17	39406380	39406380	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39406380G>A	uc002hwi.2	+	1	442	c.408G>A	c.(406-408)GAG>GAA	p.E136E	KRTAP9-9_uc010wfq.1_Intron	NM_033191	NP_149461	Q9BYQ2	KRA94_HUMAN	keratin associated protein 9-4	136	14.|15 X 5 AA repeats of C-C-[RQVGE]-[SPTN]- [TASPF].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			CCTGCTGTGAGACCACTTGCT	0.572													75	83					0	0	1	0	0
KRT33B	3884	broad.mit.edu	37	17	39521143	39521143	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39521143G>A	uc002hwl.2	-	6	1030	c.985C>T	c.(985-987)CGC>TGC	p.R329C		NM_002279	NP_002270	Q14525	KT33B_HUMAN	type I hair keratin 3B	329	Coil 2.|Rod.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				AGGTCACTGCGGATCTCCGCC	0.627													52	62					0	0	1	0	0
KRT33B	3884	broad.mit.edu	37	17	39522755	39522755	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39522755C>T	uc002hwl.2	-	3	600	c.555G>A	c.(553-555)GAG>GAA	p.E185E		NM_002279	NP_002270	Q14525	KT33B_HUMAN	type I hair keratin 3B	185	Rod.|Coil 1B.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				ACAGCAGCTCCTCCTTCAGGG	0.567													6	76					0	0	1	0	0
KRT34	3885	broad.mit.edu	37	17	39538306	39538306	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39538306C>T	uc002hwm.2	-	1	331	c.319G>A	c.(319-321)GAC>AAC	p.D107N		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	107	Rod.|Coil 1A.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				GCCAGGCGGTCGTTCAGGAAC	0.612													17	109					0	0	1	0	0
KRT31	3881	broad.mit.edu	37	17	39553606	39553606	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39553606G>A	uc002hwn.2	-	1	239	c.186C>T	c.(184-186)TTC>TTT	p.F62F	KRT31_uc010cxn.2_Silent_p.F62F	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	62	Coil 1A.|Rod.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				GGTCGTTCAGGAACTGCATAG	0.622													52	83					0	0	1	0	0
KRT37	8688	broad.mit.edu	37	17	39579060	39579060	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39579060C>T	uc002hwp.1	-	3	749	c.702G>A	c.(700-702)GAG>GAA	p.E234E	uc002hwo.1_Intron	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	234	Rod.|Coil 1B.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				GGGAGAGCTGCTCCTCCTTCA	0.692													18	22					0	0	1	0	0
KRT38	8687	broad.mit.edu	37	17	39597070	39597070	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39597070C>T	uc002hwq.1	-	1	527	c.104G>A	c.(103-105)GGG>GAG	p.G35E		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	35	Head.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				GGCCTCTGCCCCAGGCTGGCA	0.617													18	39					0	0	1	0	0
KRT32	3882	broad.mit.edu	37	17	39622349	39622349	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39622349G>A	uc002hwr.2	-	2	609	c.548C>T	c.(547-549)GCC>GTC	p.A183V		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	183	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				AACTCACTTGGCCCTGAAGTC	0.547													5	71					0	0	1	0	0
KRT35	3886	broad.mit.edu	37	17	39637034	39637034	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39637034C>T	uc002hws.2	-	1	359	c.316G>A	c.(316-318)GAC>AAC	p.D106N		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	106	Rod.|Coil 1A.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				GCCAGGCGGTCGTTCAGGGAT	0.637													50	48					0	0	1	0	0
KRT36	8689	broad.mit.edu	37	17	39642774	39642774	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39642774G>A	uc002hwt.2	-	7	1258	c.1258C>T	c.(1258-1260)CCT>TCT	p.P420S		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	420	Tail.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				GGGACAGAAGGAACTCTAATA	0.597													8	9					0	0	1	0	0
JUP	3728	broad.mit.edu	37	17	39680673	39680673	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39680673G>A	uc010wfs.1	-	7	1277	c.1269C>T	c.(1267-1269)GCC>GCT	p.A423A	KRT15_uc002hxb.1_5'Flank|uc002hxc.1_5'Flank|KRT19_uc002hxd.3_Silent_p.A260A	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	Error:Variant_position_missing_in_P14923_after_alignment					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		GGTTCTGCTCGGCCATGACCT	0.602													10	84					0	0	1	0	0
KRT9	3857	broad.mit.edu	37	17	39724454	39724454	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39724454C>T	uc002hxe.3	-	6	1420	c.1354G>A	c.(1354-1356)GAG>AAG	p.E452K	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	452	Rod.|Coil 2.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				TGGTAGGTCTCGATTTCCTTC	0.552													20	24					0	0	1	0	0
KRT9	3857	broad.mit.edu	37	17	39724502	39724502	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39724502C>T	uc002hxe.3	-	6	1372	c.1306G>A	c.(1306-1308)GAA>AAA	p.E436K	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	436	Rod.|Coil 2.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				AGGCTGTATTCCTGATTCTGG	0.547													21	45					0	0	1	0	0
KRT17	3872	broad.mit.edu	37	17	39777260	39777260	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39777260G>A	uc002hxh.2	-	5	1039	c.918C>T	c.(916-918)ACC>ACT	p.T306T	JUP_uc010wfs.1_Intron	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	306	Coil 2.|Rod.				epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				AGGCCTGCATGGTGCGCCGGA	0.597									Steatocystoma_Multiplex				21	28					0	0	1	0	0
KRT17	3872	broad.mit.edu	37	17	39780712	39780712	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39780712G>A	uc002hxh.2	-	1	171	c.50C>T	c.(49-51)TCC>TTC	p.S17F	JUP_uc010wfs.1_Intron|KRT17_uc010wft.1_Missense_Mutation_p.S17F	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	17	Head.				epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				CAGGCCGGAGGAGCCCTTGAT	0.716									Steatocystoma_Multiplex				9	13					0	0	1	0	0
GAST	2520	broad.mit.edu	37	17	39872043	39872043	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39872043G>A	uc002hxl.2	+	3	257	c.225G>A	c.(223-225)AAG>AAA	p.K75K	JUP_uc010wfs.1_Intron	NM_000805	NP_000796	P01350	GAST_HUMAN	gastrin preproprotein	75		Cleavage.				extracellular region	hormone activity				0		Breast(137;0.000307)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			CGTCCAAGAAGCAGGGACCAT	0.557													38	50					0	0	1	0	0
HAP1	9001	broad.mit.edu	37	17	39888301	39888301	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39888301C>T	uc002hxm.1	-	4	796	c.784G>A	c.(784-786)GAG>AAG	p.E262K	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Missense_Mutation_p.E262K|HAP1_uc002hxo.1_Missense_Mutation_p.E270K|HAP1_uc002hxp.1_Missense_Mutation_p.E262K	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	262	Glu-rich.|HAP1 N-terminal.				brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			tcctcatcctcctcATCAGAA	0.249													12	19					0	0	1	0	0
HAP1	9001	broad.mit.edu	37	17	39890852	39890852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39890852C>T	uc002hxm.1	-	1	47	c.35G>A	c.(34-36)GGG>GAG	p.G12E	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Missense_Mutation_p.G12E|HAP1_uc002hxo.1_Missense_Mutation_p.G12E|HAP1_uc002hxp.1_Missense_Mutation_p.G12E	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	12					brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			GAGCCGGCTCCCCGCGCAGCA	0.736													3	5					0	0	1	0	0
JUP	3728	broad.mit.edu	37	17	39927939	39927939	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39927939C>T	uc002hxq.2	-	2	445	c.168G>A	c.(166-168)AAG>AAA	p.K56K	JUP_uc010wfs.1_Silent_p.K56K|JUP_uc002hxr.2_Silent_p.K56K|JUP_uc002hxs.2_Silent_p.K56K	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	56					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		TGGTGGTTTTCTTGAGCGTGT	0.637													33	33					0	0	1	0	0
SC65	10609	broad.mit.edu	37	17	39964117	39964117	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39964117G>A	uc002hxt.2	-	5	1340	c.1056C>T	c.(1054-1056)CCC>CCT	p.P352P	SC65_uc002hxu.2_Silent_p.P443P	NM_006455	NP_006446	Q92791	SC65_HUMAN	synaptonemal complex protein SC65	352	Asp/Glu-rich (acidic).				synaptonemal complex assembly	nucleolus|synaptonemal complex	binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.149)		CCACCTCCCGGGGCTGGAAGT	0.483													26	20					0	0	1	0	0
FKBP10	60681	broad.mit.edu	37	17	39969292	39969292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39969292C>T	uc002hxv.2	+	1	331	c.6C>T	c.(4-6)TTC>TTT	p.F2F	SC65_uc002hxt.2_5'Flank|SC65_uc002hxu.2_5'Flank	NM_021939	NP_068758	Q96AY3	FKB10_HUMAN	FK506 binding protein 10 precursor	2					protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		GCACCATGTTCCCCGCGGGCC	0.667													8	14					0	0	1	0	0
FKBP10	60681	broad.mit.edu	37	17	39974733	39974733	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39974733G>A	uc002hxv.2	+	4	1006	c.681G>A	c.(679-681)AGG>AGA	p.R227R	FKBP10_uc002hxw.1_5'Flank	NM_021939	NP_068758	Q96AY3	FKB10_HUMAN	FK506 binding protein 10 precursor	227	PPIase FKBP-type 2.				protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		GAGAGAGAAGGAAGATTATCA	0.547													9	18					0	0	1	0	0
FKBP10	60681	broad.mit.edu	37	17	39974767	39974767	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39974767G>A	uc002hxv.2	+	4	1040	c.715G>A	c.(715-717)GAG>AAG	p.E239K	FKBP10_uc002hxw.1_5'Flank	NM_021939	NP_068758	Q96AY3	FKB10_HUMAN	FK506 binding protein 10 precursor	239	PPIase FKBP-type 2.				protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		GGCCTATGGCGAGAAAGGCTA	0.458													4	14					0	0	1	0	0
FKBP10	60681	broad.mit.edu	37	17	39978641	39978641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39978641G>A	uc002hxv.2	+	10	2055	c.1730G>A	c.(1729-1731)CGG>CAG	p.R577Q	FKBP10_uc002hxw.1_Missense_Mutation_p.R341Q	NM_021939	NP_068758	Q96AY3	FKB10_HUMAN	FK506 binding protein 10 precursor	577	EF-hand 2.				protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		GACGAGGAGCGGGTCCACGAG	0.617													8	8					0	0	1	0	0
NT5C3L	115024	broad.mit.edu	37	17	39985108	39985108	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:39985108G>A	uc002hyc.3	-	7	612	c.603C>T	c.(601-603)ATC>ATT	p.I201I	NT5C3L_uc002hxx.3_Silent_p.I66I|NT5C3L_uc010wfu.1_Silent_p.I66I|NT5C3L_uc002hyb.3_Silent_p.I124I|NT5C3L_uc002hyd.3_Silent_p.I124I|NT5C3L_uc002hxy.3_Silent_p.I159I|NT5C3L_uc002hxz.3_Silent_p.I124I|NT5C3L_uc002hya.3_Intron	NM_052935	NP_443167	C9JKC4	C9JKC4_HUMAN	5'-nucleotidase, cytosolic III-like	167						cytoplasm	5'-nucleotidase activity|magnesium ion binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.15)		TCATCTGTCGGATAATTTCTT	0.438													34	59					0	0	1	0	0
KLHL10	317719	broad.mit.edu	37	17	40001727	40001727	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40001727G>A	uc010cxr.2	+	3	1176	c.1034G>A	c.(1033-1035)GGG>GAG	p.G345E	KLHL10_uc010wfv.1_Missense_Mutation_p.G339E|KLHL10_uc010wfw.1_Missense_Mutation_p.G257E	NM_152467	NP_689680	Q6JEL2	KLH10_HUMAN	kelch-like 10	345	Kelch 2.					cytoplasm				ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		Breast(137;0.000162)				TATATCATTGGGGGGTTTGAT	0.488													7	81					0	0	1	0	0
TTC25	83538	broad.mit.edu	37	17	40091482	40091482	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40091482C>T	uc002hyj.3	+	2	216	c.127C>T	c.(127-129)CAG>TAG	p.Q43*	TTC25_uc010cxt.2_RNA|TTC25_uc010cxs.1_Nonsense_Mutation_p.Q43*	NM_031421	NP_113609	Q96NG3	TTC25_HUMAN	tetratricopeptide repeat domain 25	43	TPR 1.			Q -> K (in Ref. 3; AAH25390).		cytoplasm	protein binding			ovary(1)	1		all_cancers(22;8.16e-06)|Breast(137;0.000143)|all_epithelial(22;0.000236)				TCTTTACCTTCAGGATGGAGA	0.537													11	24					0	0	1	0	0
KCNH4	23415	broad.mit.edu	37	17	40312406	40312406	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40312406C>T	uc002hzb.2	-	16	3039	c.2706G>A	c.(2704-2706)CGG>CGA	p.R902R		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	902	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		CCATGATGTGCCGCAGCTCCC	0.592													16	34					0	0	1	0	0
KCNH4	23415	broad.mit.edu	37	17	40330368	40330368	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40330368G>A	uc002hzb.2	-	3	771	c.438C>T	c.(436-438)GGC>GGT	p.G146G		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	146	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TGTCCCCGCGGCCTCCTTGGG	0.567													21	22					0	0	1	0	0
GHDC	84514	broad.mit.edu	37	17	40344692	40344693	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40344692_40344693GG>AT	uc002hzd.2	-	4	939_940	c.455_456CC>AT	c.(454-456)GCC>GAT	p.A152D	GHDC_uc002hzg.1_Missense_Mutation_p.A152D|GHDC_uc010wgg.1_Missense_Mutation_p.A113D|GHDC_uc002hze.3_Missense_Mutation_p.A152D|GHDC_uc002hzf.3_Missense_Mutation_p.A152D|GHDC_uc010cxz.2_RNA	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	152						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		GCGTCACACGGGCAGTGCGTCC	0.639													20	36					0	0	1	0	0
PTRF	284119	broad.mit.edu	37	17	40557273	40557273	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40557273G>A	uc002hzo.2	-	2	764	c.605C>T	c.(604-606)TCG>TTG	p.S202L	PTRF_uc010wgi.1_Missense_Mutation_p.S184L	NM_012232	NP_036364	Q6NZI2	PTRF_HUMAN	polymerase I and transcript release factor	202	Potential.				regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription initiation from RNA polymerase I promoter	caveola|cytosol|endoplasmic reticulum|microsome|mitochondrion|nucleoplasm	protein binding|rRNA primary transcript binding			breast(1)	1		all_cancers(22;0.00146)|Breast(137;0.00116)|all_epithelial(22;0.0134)		BRCA - Breast invasive adenocarcinoma(366;0.193)		CTCGTCCGACGAAAGCTCCAG	0.667													83	109					0	0	1	0	0
TUBG1	7283	broad.mit.edu	37	17	40762196	40762196	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40762196C>T	uc002ian.2	+	2	518	c.120C>T	c.(118-120)TTC>TTT	p.F40F	FAM134C_uc002ial.2_5'Flank|FAM134C_uc010wgq.1_5'Flank|FAM134C_uc002iam.1_5'Flank|FAM134C_uc010cyk.1_Intron	NM_001070	NP_001061	P23258	TBG1_HUMAN	tubulin, gamma 1	40					G2/M transition of mitotic cell cycle|meiotic spindle organization|protein polymerization	condensed nuclear chromosome|cytosol|gamma-tubulin complex|polar microtubule	GTP binding|GTPase activity|protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.129)		TGGAGGAGTTCGCCACCGAGG	0.657													45	76					0	0	1	0	0
TUBG1	7283	broad.mit.edu	37	17	40766576	40766576	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40766576C>T	uc002ian.2	+	10	1457	c.1059C>T	c.(1057-1059)CCC>CCT	p.P353P		NM_001070	NP_001061	P23258	TBG1_HUMAN	tubulin, gamma 1	353					G2/M transition of mitotic cell cycle|meiotic spindle organization|protein polymerization	condensed nuclear chromosome|cytosol|gamma-tubulin complex|polar microtubule	GTP binding|GTPase activity|protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.129)		CGTGGGGCCCCGCCAGCATCC	0.652													40	40					0	0	1	0	0
LOC100190938	100190938	broad.mit.edu	37	17	40905760	40905760	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40905760C>T	uc002ibd.1	-	4		c.2327G>A								Homo sapiens cDNA FLJ32559 fis, clone SPLEN1000144.												0						CTCTATGGTTCGTCCTTCACC	0.547													13	10					0	0	1	0	0
WNK4	65266	broad.mit.edu	37	17	40933038	40933038	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40933038G>A	uc002ibj.2	+	1	343	c.322G>A	c.(322-324)GGC>AGC	p.G108S	WNK4_uc010wgx.1_5'UTR|WNK4_uc002ibk.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	108					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		ACCCCCCGAGGGCACGTGGAC	0.731													3	11					0	0	1	0	0
WNK4	65266	broad.mit.edu	37	17	40935959	40935959	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40935959C>T	uc002ibj.2	+	3	817	c.796C>T	c.(796-798)CTG>TTG	p.L266L	WNK4_uc010wgx.1_5'UTR|WNK4_uc002ibk.1_Silent_p.L38L|WNK4_uc010wgy.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	266	Protein kinase.				intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CCCCAGGTACCTGAGGCGGTT	0.672													5	18					0	0	1	0	0
WNK4	65266	broad.mit.edu	37	17	40947690	40947690	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40947690G>A	uc002ibj.2	+	16	3091	c.3070G>A	c.(3070-3072)GAA>AAA	p.E1024K	WNK4_uc010wgx.1_Missense_Mutation_p.E688K|CCDC56_uc010wgz.1_3'UTR	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	1024					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		TTCATCCAAGGAACCGGCTGA	0.547													29	29					0	0	1	0	0
AOC2	314	broad.mit.edu	37	17	40998146	40998146	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:40998146C>T	uc002ibu.2	+	1	1538	c.1503C>T	c.(1501-1503)CTC>CTT	p.L501L	AOC2_uc002ibt.2_Silent_p.L501L	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	501					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		AGGAGGGCCTCCTCTTTGGGA	0.567													32	56					0	0	1	0	0
AOC3	8639	broad.mit.edu	37	17	41003708	41003708	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:41003708G>A	uc002ibv.2	+	1	508	c.348G>A	c.(346-348)GGG>GGA	p.G116G		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	116	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	TGGACAGGGGGAGCCCCCCAC	0.667													22	31					0	0	1	0	0
G6PC	2538	broad.mit.edu	37	17	41059569	41059569	+	Missense_Mutation	SNP	G	A	A	rs104894568		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:41059569G>A	uc002icb.1	+	3	449	c.370G>A	c.(370-372)GCA>ACA	p.A124T	G6PC_uc010whf.1_Intron	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	124	Helical; (Potential).		A -> T (in GSD1A).		gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		CATGGGCACAGCAGGTGTATA	0.473									Glycogen_Storage_Disease_type_Ia				20	29					0	0	1	0	0
AARSD1	80755	broad.mit.edu	37	17	41108281	41108281	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:41108281G>A	uc002icc.2	-	6	606	c.603C>T	c.(601-603)ATC>ATT	p.I201I	AARSD1_uc002icd.2_Silent_p.I314I|AARSD1_uc002ice.2_Silent_p.I284I|AARSD1_uc002icf.2_Silent_p.I375I|AARSD1_uc010whg.1_Silent_p.I375I|AARSD1_uc010cyu.1_Silent_p.I201I	NM_025267	NP_079543	Q9BTE6	AASD1_HUMAN	alanyl-tRNA synthetase domain containing 1	201					alanyl-tRNA aminoacylation	cytoplasm	alanine-tRNA ligase activity|ATP binding|metal ion binding|nucleic acid binding				0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		CAACGCCCTCGATGTTAACAA	0.547													14	91					0	0	1	0	0
BRCA1	672	broad.mit.edu	37	17	41246011	41246011	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:41246011G>A	uc002icq.2	-	10	1769	c.1537C>T	c.(1537-1539)CAT>TAT	p.H513Y	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.H442Y|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.H466Y|BRCA1_uc002ict.2_Missense_Mutation_p.H513Y|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.H513Y|BRCA1_uc002ide.1_Missense_Mutation_p.H344Y|BRCA1_uc010cyy.1_Missense_Mutation_p.H513Y|BRCA1_uc010whs.1_Missense_Mutation_p.H513Y|BRCA1_uc010cyz.2_Missense_Mutation_p.H466Y|BRCA1_uc010cza.2_Missense_Mutation_p.H487Y|BRCA1_uc010wht.1_Missense_Mutation_p.H217Y	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	513					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TCCTCAGGATGAAGGCCTGAT	0.388			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			13	29					0	0	1	0	0
NBR1	4077	broad.mit.edu	37	17	41342735	41342735	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:41342735C>T	uc010czd.2	+	9	945	c.805C>T	c.(805-807)CCG>TCG	p.P269S	NBR1_uc010diz.2_Missense_Mutation_p.P269S|NBR1_uc010whu.1_Missense_Mutation_p.P269S|NBR1_uc010whv.1_Missense_Mutation_p.P269S|NBR1_uc010whw.1_Missense_Mutation_p.P248S|NBR1_uc010whx.1_Missense_Mutation_p.P78S	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	269					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		CTCCTCTGAACCGTTCTGTCA	0.478													15	16					0	0	1	0	0
SOST	50964	broad.mit.edu	37	17	41836020	41836020	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:41836020C>T	uc002iec.1	-	1	137	c.90G>A	c.(88-90)AAG>AAA	p.K30K		NM_025237	NP_079513	Q9BQB4	SOST_HUMAN	sclerostin precursor	30					negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of ossification|negative regulation of protein complex assembly|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway		heparin binding|protein binding				0		Breast(137;0.00725)		UCEC - Uterine corpus endometrioid carcinoma (308;0.177)|BRCA - Breast invasive adenocarcinoma(366;0.0741)		TGGCATCATTCTTGAACGCCT	0.622													34	36					0	0	1	0	0
MPP3	4356	broad.mit.edu	37	17	41907410	41907410	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:41907410G>A	uc002iei.3	-	6	454	c.288C>T	c.(286-288)TCC>TCT	p.S96S	MPP3_uc002ieh.2_Silent_p.S121S|MPP3_uc002iej.2_RNA|MPP3_uc010czi.1_Silent_p.S96S|MPP3_uc010wik.1_Silent_p.S121S|MPP3_uc010czj.1_Silent_p.S96S	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	96	L27 2.				signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		GGTGCGGGGTGGACAGCAGCT	0.637													10	23					0	0	1	0	0
ATXN7L3	56970	broad.mit.edu	37	17	42274671	42274671	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:42274671G>A	uc002iga.2	-	3	372	c.281C>T	c.(280-282)GCC>GTC	p.A94V	ATXN7L3_uc010wiv.1_5'Flank|ATXN7L3_uc002ifz.2_Missense_Mutation_p.A94V	NM_001098833	NP_001092303	Q14CW9	AT7L3_HUMAN	ataxin 7-like 3 isoform b	94	SGF11-type.				histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|metal ion binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.113)		GCGGGAGGCGGCAATGCTGCG	0.597													53	51					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42327846	42327846	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:42327846C>T	uc002igf.3	-	20	2865	c.2716G>A	c.(2716-2718)GAA>AAA	p.E906K		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	906	Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		ATGGCCACTTCGTCGTATTCA	0.597													17	21					0	0	1	0	0
GPATCH8	23131	broad.mit.edu	37	17	42513902	42513902	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:42513902G>A	uc002igw.1	-	4	269	c.205C>T	c.(205-207)CCC>TCC	p.P69S	GPATCH8_uc002igv.1_5'UTR|GPATCH8_uc010wiz.1_5'UTR	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	69	G-patch.					intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		ATTGGAATGGGATCTGTTCTC	0.403													14	31					0	0	1	0	0
DBF4B	80174	broad.mit.edu	37	17	42825720	42825720	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:42825720C>T	uc002ihf.2	+	13	1289	c.1076C>T	c.(1075-1077)TCC>TTC	p.S359F	DBF4B_uc002ihe.2_Missense_Mutation_p.S173F|DBF4B_uc010wjc.1_Missense_Mutation_p.S343F	NM_145663	NP_663696	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B isoform 1	359					cell cycle	nucleus	nucleic acid binding|zinc ion binding				0		Prostate(33;0.0322)				TGGTCAGGTTCCCCAGCTTCT	0.592													48	101					0	0	1	0	0
EFTUD2	9343	broad.mit.edu	37	17	42941120	42941120	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:42941120G>A	uc002ihn.2	-	15	1577	c.1316C>T	c.(1315-1317)CCT>CTT	p.P439L	EFTUD2_uc010wje.1_Missense_Mutation_p.P404L|EFTUD2_uc010wjf.1_Missense_Mutation_p.P429L	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	439						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				CTTTGGAGAAGGGATATGCTG	0.547													22	29					0	0	1	0	0
GFAP	2670	broad.mit.edu	37	17	42989105	42989105	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:42989105C>T	uc002ihq.2	-	5	901	c.841G>A	c.(841-843)GAA>AAA	p.E281K	GFAP_uc002ihr.2_Missense_Mutation_p.E281K|GFAP_uc010wjg.1_RNA	NM_002055	NP_002046	P14136	GFAP_HUMAN	glial fibrillary acidic protein isoform 1	281	Coil 2B.|Rod.					cytoplasm|intermediate filament	structural constituent of cytoskeleton			ovary(1)|pancreas(1)	2		Prostate(33;0.0959)				TCGTTGGCTTCGTGCTTGGCC	0.682													19	29					0	0	1	0	0
GFAP	2670	broad.mit.edu	37	17	42992602	42992602	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:42992602C>T	uc002ihq.2	-	1	313	c.253G>A	c.(253-255)GAG>AAG	p.E85K	GFAP_uc002ihr.2_Missense_Mutation_p.E85K|GFAP_uc010wjg.1_RNA	NM_002055	NP_002046	P14136	GFAP_HUMAN	glial fibrillary acidic protein isoform 1	85	Rod.|Coil 1A.					cytoplasm|intermediate filament	structural constituent of cytoskeleton			ovary(1)|pancreas(1)	2		Prostate(33;0.0959)				CGAACCTTCTCGATGTAGCTG	0.602													22	27					0	0	1	0	0
GFAP	2670	broad.mit.edu	37	17	42992800	42992800	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:42992800C>T	uc002ihq.2	-	1	115	c.55G>A	c.(55-57)GAG>AAG	p.E19K	GFAP_uc002ihr.2_Missense_Mutation_p.E19K|GFAP_uc010wjg.1_RNA	NM_002055	NP_002046	P14136	GFAP_HUMAN	glial fibrillary acidic protein isoform 1	19	Head.					cytoplasm|intermediate filament	structural constituent of cytoskeleton			ovary(1)|pancreas(1)	2		Prostate(33;0.0959)				ACCATCATCTCCCCTGAGGAG	0.667													6	9					0	0	1	0	0
KIF18B	146909	broad.mit.edu	37	17	43006217	43006217	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43006217G>A	uc010wji.1	-	12	1830	c.1729C>T	c.(1729-1731)CCT>TCT	p.P577S	KIF18B_uc002iht.2_Missense_Mutation_p.P577S|KIF18B_uc010wjh.1_Missense_Mutation_p.P565S	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				TGAGCCAGAGGTGCCCCCCTG	0.582													8	11					0	0	1	0	0
KIF18B	146909	broad.mit.edu	37	17	43012707	43012707	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43012707G>A	uc010wji.1	-	3	492	c.391C>T	c.(391-393)CTG>TTG	p.L131L	KIF18B_uc002iht.2_Silent_p.L131L|KIF18B_uc010wjh.1_Silent_p.L131L	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				ACGGTGGTCAGGTACATGATG	0.642													15	28					0	0	1	0	0
HEXIM2	124790	broad.mit.edu	37	17	43246863	43246863	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43246863G>A	uc002iih.1	+	4	787	c.548G>A	c.(547-549)CGA>CAA	p.R183Q	HEXIM2_uc010daf.1_Missense_Mutation_p.R205Q|HEXIM2_uc002iii.1_Missense_Mutation_p.R183Q|HEXIM2_uc002iij.1_Missense_Mutation_p.R183Q|uc002iik.1_RNA	NM_144608	NP_653209	Q96MH2	HEXI2_HUMAN	hexamthylene bis-acetamide inducible 2	183					negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding				0						GGGCGGGGCCGAGCGCACGGT	0.652													9	9					0	0	1	0	0
FMNL1	752	broad.mit.edu	37	17	43319820	43319820	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43319820G>A	uc002iin.2	+	16	2198	c.1998G>A	c.(1996-1998)GAG>GAA	p.E666E	FMNL1_uc002iiq.2_Silent_p.E244E|FMNL1_uc010dag.2_RNA	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	666	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						TCAATGATGAGAAGGTGCTGC	0.532													15	25					0	0	1	0	0
FMNL1	752	broad.mit.edu	37	17	43322721	43322721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43322721G>A	uc002iin.2	+	22	3030	c.2830G>A	c.(2830-2832)GAG>AAG	p.E944K	FMNL1_uc002iiq.2_Missense_Mutation_p.E522K|FMNL1_uc010dag.2_RNA|LOC100133991_uc010dah.2_5'Flank	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	944	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						GGTGCTCAAGGAGTTCCTGAG	0.632													34	39					0	0	1	0	0
ARHGAP27	201176	broad.mit.edu	37	17	43473424	43473424	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43473424G>A	uc002iix.2	-	15	1737	c.1288C>T	c.(1288-1290)CTG>TTG	p.L430L	ARHGAP27_uc010dak.2_Silent_p.L403L	NM_199282	NP_954976	Q6ZUM4	RHG27_HUMAN	Rho GTPase activating protein 27 isoform a	771	Rho-GAP.				positive regulation of Cdc42 GTPase activity|receptor-mediated endocytosis|signal transduction	cytoplasm|membrane	Rac GTPase activator activity|SH3 domain binding				0	Renal(3;0.0405)					AAGAGCTTCAGGGCTCCGGTG	0.632													6	38					0	0	1	0	0
LOC644172	644172	broad.mit.edu	37	17	43679239	43679239	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43679239G>A	uc010wjw.1	-	1	510	c.426C>T	c.(424-426)TCC>TCT	p.S142S		NR_026901				Homo sapiens cDNA clone IMAGE:3941904, partial cds.												0						GGCTGTTGGTGGAGGTGCCTC	0.647													7	48					0	0	1	0	0
CRHR1	1394	broad.mit.edu	37	17	43907535	43907535	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43907535C>T	uc010dap.2	+	7	862	c.597C>T	c.(595-597)TTC>TTT	p.F199F	CRHR1_uc010wjx.1_5'UTR|CRHR1_uc002ijp.2_Silent_p.F69F|CRHR1_uc002ijm.2_Silent_p.F170F|CRHR1_uc002ijn.2_Silent_p.F130F|CRHR1_uc010dar.2_Silent_p.F170F|CRHR1_uc010dao.2_Silent_p.F69F|CRHR1_uc010daq.2_Intron|CRHR1_uc010das.1_RNA|CRHR1_uc002ijo.1_RNA	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	199	Helical; Name=2; (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		CCACCTGGTTCGTGGTCCAGC	0.632													25	34					0	0	1	0	0
IMP5	162540	broad.mit.edu	37	17	43922587	43922587	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43922587G>A	uc010wka.1	+	1	315	c.315G>A	c.(313-315)ACG>ACA	p.T105T	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	105	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		GCTTCCACACGAAAGGCTGGC	0.667													8	30					0	0	1	0	0
IMP5	162540	broad.mit.edu	37	17	43923308	43923308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:43923308C>T	uc010wka.1	+	1	1036	c.1036C>T	c.(1036-1038)CGC>TGC	p.R346C	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	346	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		CAATGAGGACCGCTGGGCGTG	0.637													17	23					0	0	1	0	0
KIAA1267	284058	broad.mit.edu	37	17	44108899	44108899	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:44108899G>A	uc002ikb.2	-	14	3346	c.3261C>T	c.(3259-3261)CCC>CCT	p.P1087P	KIAA1267_uc002ikc.2_Silent_p.P1087P|KIAA1267_uc002ikd.2_Silent_p.P1087P|KIAA1267_uc010dav.2_Silent_p.P1086P|KIAA1267_uc010wkb.1_Silent_p.P418P|KIAA1267_uc010wkc.1_Silent_p.P355P	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	1087						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				GACTCTTGAGGGGGACAATGG	0.617													9	19					0	0	1	0	0
WNT3	7473	broad.mit.edu	37	17	44851147	44851147	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:44851147G>A	uc002ikv.2	-	2	328	c.209C>T	c.(208-210)GCC>GTC	p.A70V		NM_030753	NP_110380	P56703	WNT3_HUMAN	wingless-type MMTV integration site family,	70					canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|cellular response to retinoic acid|dorsal/ventral axis specification|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic pattern specification|head morphogenesis|hemopoietic stem cell proliferation|inner ear morphogenesis|limb bud formation|mammary gland epithelium development|mesoderm formation|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|positive regulation of cell proliferation|Spemann organizer formation at the anterior end of the primitive streak|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane fraction|membrane raft|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|signal transducer activity			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			CACGCCCTCGGCCACGCTGGG	0.647													28	36					0	0	1	0	0
MYL4	4635	broad.mit.edu	37	17	45299052	45299052	+	Missense_Mutation	SNP	G	A	A	rs138156448		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:45299052G>A	uc002ilg.2	+	5	446	c.318G>A	c.(316-318)ATG>ATA	p.M106I	MYL4_uc002ilh.2_Missense_Mutation_p.M106I	NM_001002841	NP_001002841	P12829	MYL4_HUMAN	atrial/embryonic alkali myosin light chain	106					cardiac muscle contraction|muscle filament sliding|muscle organ development|positive regulation of ATPase activity|regulation of the force of heart contraction	A band|cytosol|muscle myosin complex	actin filament binding|actin monomer binding|calcium ion binding|myosin II heavy chain binding|structural constituent of muscle			ovary(2)	2						CTGAAGAGATGAATGTCAAGA	0.547													48	55					0	0	1	0	0
MYL4	4635	broad.mit.edu	37	17	45299116	45299116	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:45299116G>A	uc002ilg.2	+	5	510	c.382G>A	c.(382-384)GAG>AAG	p.E128K	MYL4_uc002ilh.2_Missense_Mutation_p.E128K	NM_001002841	NP_001002841	P12829	MYL4_HUMAN	atrial/embryonic alkali myosin light chain	128					cardiac muscle contraction|muscle filament sliding|muscle organ development|positive regulation of ATPase activity|regulation of the force of heart contraction	A band|cytosol|muscle myosin complex	actin filament binding|actin monomer binding|calcium ion binding|myosin II heavy chain binding|structural constituent of muscle			ovary(2)	2						CCGCAACAAGGAGCAGGGCAC	0.542													42	57					0	0	1	0	0
ITGB3	3690	broad.mit.edu	37	17	45361850	45361850	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:45361850G>A	uc002ilj.2	+	4	423	c.403G>A	c.(403-405)GAT>AAT	p.D135N	ITGB3_uc002ili.1_Missense_Mutation_p.D135N|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	135	VWFA.|Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	GCAGGTGGAGGATTACCCTGT	0.468													16	37					0	0	1	0	0
ITGB3	3690	broad.mit.edu	37	17	45384947	45384947	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:45384947G>A	uc002ilj.2	+	14	2265	c.2245G>A	c.(2245-2247)GAC>AAC	p.D749N	ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	749	Cytoplasmic (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	CACCATCCACGACCGAAAAGA	0.537													18	27					0	0	1	0	0
C17orf57	124989	broad.mit.edu	37	17	45412651	45412651	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:45412651C>T	uc002iln.2	+	5	531	c.120C>T	c.(118-120)ATC>ATT	p.I40I	ITGB3_uc010wkr.1_RNA|C17orf57_uc002ilm.2_Silent_p.I40I|C17orf57_uc002ill.1_5'UTR|C17orf57_uc010daz.1_Silent_p.I40I	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	40							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						AGAAATACATCAAGTTTTCTA	0.318													45	67					0	0	1	0	0
C17orf57	124989	broad.mit.edu	37	17	45451937	45451937	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:45451937C>T	uc002iln.2	+	12	1388	c.977C>T	c.(976-978)TCT>TTT	p.S326F	C17orf57_uc002ilm.2_Missense_Mutation_p.S230F|C17orf57_uc002ill.1_Missense_Mutation_p.S82F|C17orf57_uc010daz.1_Missense_Mutation_p.S278F	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	326							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						AATAGTTTGTCTTCCAAACTC	0.303													29	42					0	0	1	0	0
TBX21	30009	broad.mit.edu	37	17	45820503	45820503	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:45820503C>T	uc002ilv.1	+	3	924	c.713C>T	c.(712-714)TCA>TTA	p.S238L		NM_013351	NP_037483	Q9UL17	TBX21_HUMAN	T-box 21	238	T-box.				lymphocyte migration|multicellular organismal development|positive regulation of transcription, DNA-dependent|response to virus	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						CAGGAAGTTTCATTTGGGAAA	0.572													23	44					0	0	1	0	0
SP6	80320	broad.mit.edu	37	17	45925633	45925633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:45925633G>A	uc002img.1	-	2	495	c.163C>T	c.(163-165)CTC>TTC	p.L55F	SP6_uc002imh.1_Missense_Mutation_p.L55F	NM_199262	NP_954871	Q3SY56	SP6_HUMAN	Sp6 transcription factor	55					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CCCAGCGGGAGGCTCTGCAGC	0.692													10	16					0	0	1	0	0
MIR152	406943	broad.mit.edu	37	17	46114609	46114609	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46114609G>A	hsa-mir-152|MI0000462	-			c.5G>A			COPZ2_uc002imy.2_Intron|uc010wld.1_RNA																	0						GGGCCGGGGGGGACAGCGGGC	0.672											OREG0024511	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	15					0	0	1	0	0
HOXB1	3211	broad.mit.edu	37	17	46608058	46608058	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46608058G>A	uc002ink.1	-	1	215	c.209C>T	c.(208-210)TCG>TTG	p.S70L		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	70						nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCCCAGGGTCGAAGGCGGCTG	0.682													16	47					0	0	1	0	0
HOXB2	3212	broad.mit.edu	37	17	46620486	46620486	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46620486C>T	uc002inm.2	-	2	1135	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K		NM_002145	NP_002136	P14652	HXB2_HUMAN	homeobox B2	339					blood circulation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TCCAGCTCTTCCTCGGAAAAA	0.597													39	76					0	0	1	0	0
HOXB3	3213	broad.mit.edu	37	17	46627726	46627726	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46627726G>A	uc002inn.2	-	2	1666	c.1266C>T	c.(1264-1266)ATC>ATT	p.I422I	HOXB3_uc010wlm.1_Silent_p.I349I|HOXB3_uc010dbf.2_Silent_p.I422I|HOXB3_uc010dbg.2_Silent_p.I422I|HOXB3_uc002ino.2_Silent_p.I422I|HOXB3_uc010wlk.1_Silent_p.I290I|HOXB3_uc010wll.1_Silent_p.I349I	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	422					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCGCTTCTTGGATTCTACCCT	0.617											OREG0024516	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	44					0	0	1	0	0
HOXB3	3213	broad.mit.edu	37	17	46628458	46628458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46628458C>T	uc002inn.2	-	2	934	c.534G>A	c.(532-534)GGG>GGA	p.G178G	HOXB3_uc010wlm.1_Silent_p.G105G|HOXB3_uc010dbf.2_Silent_p.G178G|HOXB3_uc010dbg.2_Silent_p.G178G|HOXB3_uc002ino.2_Silent_p.G178G|HOXB3_uc010wlk.1_Silent_p.G46G|HOXB3_uc010wll.1_Silent_p.G105G	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	178	Gly-rich.				angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGCTCTTGTCCCCTCCCccgc	0.458													22	20					0	0	1	0	0
HOXB4	3214	broad.mit.edu	37	17	46654296	46654296	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46654296G>A	uc002inp.2	-	2	606	c.544C>T	c.(544-546)CAC>TAC	p.H182Y	HOXB3_uc010wlm.1_Intron|HOXB3_uc010dbf.2_Intron|HOXB3_uc010dbg.2_Intron|HOXB3_uc002ino.2_5'Flank|HOXB3_uc010wlk.1_5'Flank|HOXB3_uc010wll.1_Intron	NM_024015	NP_076920	P17483	HXB4_HUMAN	homeobox B4	182	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CGGTTGTAGTGAAATTCCTTC	0.632													60	58					0	0	1	0	0
HOXB9	3219	broad.mit.edu	37	17	46700315	46700315	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46700315G>A	uc002inx.2	-	2	904	c.700C>T	c.(700-702)CAG>TAG	p.Q234*		NM_024017	NP_076922	P17482	HXB9_HUMAN	homeobox B9	234	Homeobox.				canonical Wnt receptor signaling pathway|cell chemotaxis	mitochondrion|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGCCGGTTCTGAAACCAGATT	0.463													8	93					0	0	1	0	0
HOXB13	10481	broad.mit.edu	37	17	46805604	46805604	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46805604C>T	uc002ioa.2	-	1	508	c.352G>A	c.(352-354)GAA>AAA	p.E118K		NM_006361	NP_006352	Q92826	HXB13_HUMAN	homeobox B13	118					angiogenesis|epidermis development|response to wounding		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGGTACTCTTCCCCGGCCGTG	0.652													51	99					0	0	1	0	0
HOXB13	10481	broad.mit.edu	37	17	46805705	46805705	+	Missense_Mutation	SNP	C	T	T	rs138213197	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46805705C>T	uc002ioa.2	-	1	407	c.251G>A	c.(250-252)GGA>GAA	p.G84E		NM_006361	NP_006352	Q92826	HXB13_HUMAN	homeobox B13	84					angiogenesis|epidermis development|response to wounding		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTACCCGCCTCCAAAGTAACC	0.687													12	70					0	0	1	0	0
HOXB13	10481	broad.mit.edu	37	17	46805893	46805893	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46805893C>T	uc002ioa.2	-	1	219	c.63G>A	c.(61-63)GCG>GCA	p.A21A		NM_006361	NP_006352	Q92826	HXB13_HUMAN	homeobox B13	21					angiogenesis|epidermis development|response to wounding		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCCCCCTCCCGCTCCCAGCA	0.657													17	16					0	0	1	0	0
TTLL6	284076	broad.mit.edu	37	17	46868965	46868965	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:46868965C>T	uc010wlo.1	-	10	1034	c.999G>A	c.(997-999)AGG>AGA	p.R333R	TTLL6_uc002iob.2_Silent_p.R26R|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Silent_p.R86R|TTLL6_uc002iod.2_Silent_p.R180R	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	285	TTL.					cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						TGGAGAGCTTCCTGGAAGGGA	0.562											OREG0024526	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	19					0	0	1	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47117396	47117396	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47117396C>T	uc002iom.2	+	7	1095	c.761C>T	c.(760-762)TCC>TTC	p.S254F	IGF2BP1_uc010dbj.2_Intron	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	254	KH 1.|Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						GAGGGCTGCTCCTCCGCTTGT	0.517													56	67					0	0	1	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47210392	47210392	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47210392G>A	uc002ion.2	+	1	64	c.5G>A	c.(4-6)GGG>GAG	p.G2E	B4GALNT2_uc010wlt.1_Intron|B4GALNT2_uc010wlu.1_Intron	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	2	Cytoplasmic (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			CCAGGAATGGGGAGCGCTGGC	0.647													8	17					0	0	1	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47219479	47219479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47219479G>A	uc002ion.2	+	3	537	c.478G>A	c.(478-480)GAC>AAC	p.D160N	B4GALNT2_uc010wlt.1_Missense_Mutation_p.D74N|B4GALNT2_uc010wlu.1_Missense_Mutation_p.D100N	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	160	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			TGGCCAGAGCGACCTCCCAGC	0.498													38	100					0	0	1	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47236521	47236521	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47236521C>T	uc002ion.2	+	6	860	c.801C>T	c.(799-801)TTC>TTT	p.F267F	B4GALNT2_uc010wlt.1_Silent_p.F181F|B4GALNT2_uc010wlu.1_Silent_p.F207F	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	267	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			TGTTGAAGTTCATTCTTCAGC	0.532													71	176					0	0	1	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47241496	47241497	+	Missense_Mutation	DNP	CC	TT	TT	rs145043273		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47241496_47241497CC>TT	uc002ion.2	+	8	1052_1053	c.993_994CC>TT	c.(991-996)CTCCGC>CTTTGC	p.R332C	B4GALNT2_uc010wlt.1_Missense_Mutation_p.R246C|B4GALNT2_uc010wlu.1_Missense_Mutation_p.R272C	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	332	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			AGACTTTCCTCCGCCCCCACAA	0.505													43	189					0	0	1	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47247066	47247066	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47247066G>A	uc002ion.2	+	11	1736	c.1677G>A	c.(1675-1677)AAG>AAA	p.K559K	B4GALNT2_uc010wlt.1_Silent_p.K473K|B4GALNT2_uc010wlu.1_Silent_p.K499K	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	559	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			ACTACTTCAAGAACCATCTCC	0.522													9	40					0	0	1	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47247088	47247088	+	Nonstop_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47247088T>C	uc002ion.2	+	11	1758	c.1699T>C	c.(1699-1701)TAA>CAA	p.*567Q	B4GALNT2_uc010wlt.1_Nonstop_Mutation_p.*481Q|B4GALNT2_uc010wlu.1_Nonstop_Mutation_p.*507Q	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	567					lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			ATGTGCCGCATAAAGGTGTGA	0.502													13	25					0	0	1	0	0
GNGT2	2793	broad.mit.edu	37	17	47284190	47284190	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47284190C>T	uc002ioo.1	-	4	446	c.139G>A	c.(139-141)GAT>AAT	p.D47N		NM_031498	NP_113686	O14610	GBGT2_HUMAN	guanine nucleotide binding protein-gamma	47					G-protein coupled receptor protein signaling pathway|phototransduction|synaptic transmission	extracellular region|heterotrimeric G-protein complex	GTPase activity|signal transducer activity				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			AGAAAAGGATCGTTTCCTGCT	0.488													28	90					0	0	1	0	0
ABI3	51225	broad.mit.edu	37	17	47295229	47295229	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47295229G>A	uc002iop.1	+	3	912	c.414G>A	c.(412-414)AGG>AGA	p.R138R	ABI3_uc002ioq.1_Silent_p.R132R	NM_016428	NP_057512	Q9P2A4	ABI3_HUMAN	NESH protein isoform 1	138					cellular component movement|regulation of cell migration	cytoplasm|lamellipodium	protein binding				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			CCTACTGCAGGAGACCCCTCA	0.632										HNSCC(55;0.14)			25	117					0	0	1	0	0
ABI3	51225	broad.mit.edu	37	17	47299583	47299583	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47299583G>A	uc002iop.1	+	7	1431	c.933G>A	c.(931-933)GAG>GAA	p.E311E	ABI3_uc002ioq.1_Silent_p.E305E	NM_016428	NP_057512	Q9P2A4	ABI3_HUMAN	NESH protein isoform 1	311	SH3.				cellular component movement|regulation of cell migration	cytoplasm|lamellipodium	protein binding				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			CATACTTGGAGAAAGGTACCT	0.592										HNSCC(55;0.14)			27	73					0	0	1	0	0
ZNF652	22834	broad.mit.edu	37	17	47390089	47390089	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47390089G>A	uc002iov.3	-	3	1483	c.1019C>T	c.(1018-1020)ACC>ATC	p.T340I	ZNF652_uc002iow.2_Missense_Mutation_p.T340I|ZNF652_uc002iou.3_RNA	NM_001145365	NP_001138837	Q9Y2D9	ZN652_HUMAN	zinc finger protein 652	340	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_cancers(4;6.81e-14)|Breast(4;4.97e-29)|all_epithelial(4;1.53e-17)		BRCA - Breast invasive adenocarcinoma(1;3.1e-14)|Epithelial(5;2.92e-06)|all cancers(6;3.15e-05)			ATGAGCCATGGTATAGAATTT	0.378													16	54					0	0	1	0	0
PHB	5245	broad.mit.edu	37	17	47482519	47482519	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47482519G>A	uc002iox.1	-	7	727	c.654C>T	c.(652-654)TCC>TCT	p.S218S		NM_002634	NP_002625	P35232	PHB_HUMAN	prohibitin	218					cellular response to interleukin-6|DNA replication|glucocorticoid receptor signaling pathway|histone deacetylation|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|progesterone receptor signaling pathway|regulation of apoptosis	integral to plasma membrane|mitochondrial inner membrane|nucleoplasm	histone deacetylase binding|transcription regulatory region DNA binding				0	all_cancers(4;2.62e-14)|Breast(4;4.21e-29)|all_epithelial(4;6.9e-18)		Epithelial(5;8.1e-06)|all cancers(6;7.71e-05)			CAGCTGCCTTGGAGTCGCCCT	0.567													4	29					0	0	1	0	0
NGFR	4804	broad.mit.edu	37	17	47583819	47583819	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47583819G>A	uc002ioz.3	+	3	492	c.367G>A	c.(367-369)GAG>AAG	p.E123K		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	123	TNFR-Cys 3.|Extracellular (Potential).				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					TGGGCGCTGCGAGGCGTGCCG	0.697													11	16					0	0	1	0	0
NGFR	4804	broad.mit.edu	37	17	47583854	47583854	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47583854C>T	uc002ioz.3	+	3	527	c.402C>T	c.(400-402)CTC>CTT	p.L134L		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	134	TNFR-Cys 3.|Extracellular (Potential).				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					GCTCGGGCCTCGTGTTCTCCT	0.692													9	20					0	0	1	0	0
NGFR	4804	broad.mit.edu	37	17	47587925	47587925	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:47587925G>A	uc002ioz.3	+	4	845	c.720G>A	c.(718-720)CAG>CAA	p.Q240Q		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	240	Ser/Thr-rich.|Extracellular (Potential).				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					GCAGCTCCCAGCCCGTGGTGA	0.617													18	50					0	0	1	0	0
DLX4	1748	broad.mit.edu	37	17	48050471	48050471	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48050471C>T	uc002ipv.2	+	2	589	c.318C>T	c.(316-318)TCC>TCT	p.S106S	DLX4_uc002ipw.2_Silent_p.S34S	NM_138281	NP_612138	Q92988	DLX4_HUMAN	distal-less homeobox 4 isoform a	106					multicellular organismal development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGGAACCCTCCGAGCGGCGCC	0.662													25	51					0	0	1	0	0
ITGA3	3675	broad.mit.edu	37	17	48165182	48165182	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48165182C>T	uc010dbl.2	+	24	3458	c.2994C>T	c.(2992-2994)GCC>GCT	p.A998A	ITGA3_uc010dbm.2_Silent_p.A998A	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	998	Helical; (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						TGCTGGTGGCCGTGGGTGCAG	0.642													7	11					0	0	1	0	0
PDK2	5164	broad.mit.edu	37	17	48174904	48174904	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48174904C>T	uc002iqc.2	+	2	340	c.236C>T	c.(235-237)CCC>CTC	p.P79L	PDK2_uc002iqb.2_Missense_Mutation_p.P15L	NM_002611	NP_002602	Q15119	PDK2_HUMAN	pyruvate dehydrogenase kinase 2 precursor	79					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|nucleus	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			central_nervous_system(3)	3						CTGAGCACACCCTCCGTGCAG	0.612									Autosomal_Dominant_Polycystic_Kidney_Disease				9	37					0	0	1	0	0
PDK2	5164	broad.mit.edu	37	17	48182768	48182768	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48182768C>T	uc002iqc.2	+	3	398	c.294C>T	c.(292-294)TTC>TTT	p.F98F	PDK2_uc002iqb.2_Silent_p.F34F	NM_002611	NP_002602	Q15119	PDK2_HUMAN	pyruvate dehydrogenase kinase 2 precursor	98					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|nucleus	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			central_nervous_system(3)	3						TCATGGAGTTCCTGGACAAGG	0.622									Autosomal_Dominant_Polycystic_Kidney_Disease				10	23					0	0	1	0	0
PDK2	5164	broad.mit.edu	37	17	48187418	48187418	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48187418C>T	uc002iqc.2	+	11	1285	c.1181C>T	c.(1180-1182)CCC>CTC	p.P394L	PDK2_uc002iqb.2_Missense_Mutation_p.P330L	NM_002611	NP_002602	Q15119	PDK2_HUMAN	pyruvate dehydrogenase kinase 2 precursor	394					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|nucleus	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			central_nervous_system(3)	3						TGGTGTGTGCCCAGCACGGAG	0.672									Autosomal_Dominant_Polycystic_Kidney_Disease				4	14					0	0	1	0	0
SGCA	6442	broad.mit.edu	37	17	48245758	48245758	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48245758G>A	uc002iqi.2	+	5	445	c.409G>A	c.(409-411)GAG>AAG	p.E137K	SGCA_uc010wmh.1_Missense_Mutation_p.E35K|SGCA_uc002iqj.2_Missense_Mutation_p.E137K|SGCA_uc010wmi.1_RNA	NM_000023	NP_000014	Q16586	SGCA_HUMAN	sarcoglycan, alpha isoform 1 precursor	137	Extracellular (Potential).		E -> K (in LGMD2D).		muscle contraction|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma	calcium ion binding			ovary(2)	2						ATACCAAGCCGAGTTCCTGGT	0.677													3	8					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48266576	48266576	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48266576G>A	uc002iqm.2	-	40	3016	c.2890C>T	c.(2890-2892)CCT>TCT	p.P964S		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	964	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CTCTGACCAGGCAGGCCGACC	0.617			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						5	30					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48267435	48267435	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48267435G>A	uc002iqm.2	-	36	2612	c.2486C>T	c.(2485-2487)CCT>CTT	p.P829L		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	829	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	AGCATCACCAGGTTCGCCTTT	0.657			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						29	65					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48267725	48267725	+	Missense_Mutation	SNP	G	A	A	rs145307365		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48267725G>A	uc002iqm.2	-	35	2540	c.2414C>T	c.(2413-2415)CCT>CTT	p.P805L		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	805	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	GGGGGGACCAGGCTCACCACG	0.622			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						6	79					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48269226	48269226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48269226C>T	uc002iqm.2	-	31	2176	c.2050G>A	c.(2050-2052)GAG>AAG	p.E684K		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	684	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	ACACCACGCTCGCCAGGGAAA	0.642			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						3	13					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48269841	48269841	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48269841C>T	uc002iqm.2	-	29	2104	c.1978G>A	c.(1978-1980)GAA>AAA	p.E660K		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	660	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CTTACCTGTTCACCAGGTTTG	0.562			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						9	21					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48275352	48275352	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48275352G>A	uc002iqm.2	-	8	726	c.600C>T	c.(598-600)GGC>GGT	p.G200G		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	200	Triple-helical region.		G -> V (in OI1; patient diagnosed with OI1/OI4).		axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	GACCTTGGAAGCCTTGGGGAC	0.493			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta				OREG0024560	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	37					0	0	1	0	0
EME1	146956	broad.mit.edu	37	17	48457688	48457688	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48457688A>C	uc002iqs.1	+	8	1435	c.1362A>C	c.(1360-1362)GAA>GAC	p.E454D	EME1_uc010dbp.1_Missense_Mutation_p.E467D|EME1_uc010dbq.1_RNA|uc010wmk.1_5'Flank	NM_152463	NP_689676	Q96AY2	EME1_HUMAN	essential meiotic endonuclease 1 homolog 1	454					DNA recombination|DNA repair	nucleolus	DNA binding|endonuclease activity|metal ion binding|protein binding				0	Breast(11;5.62e-19)		BRCA - Breast invasive adenocarcinoma(22;2.43e-08)			TCCGAGATGAAACTACCTTCT	0.547								Direct_reversal_of_damage|Homologous_recombination					3	26					0	0	1	0	0
ACSF2	80221	broad.mit.edu	37	17	48538680	48538680	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48538680C>T	uc002iqu.2	+	3	506	c.402C>T	c.(400-402)TCC>TCT	p.S134S	ACSF2_uc010wml.1_Intron|ACSF2_uc010wmm.1_Silent_p.S159S|ACSF2_uc010wmn.1_Silent_p.S134S|ACSF2_uc010wmo.1_Intron	NM_025149	NP_079425	Q96CM8	ACSF2_HUMAN	acyl-CoA synthetase family member 2 precursor	134					fatty acid metabolic process	mitochondrion	ATP binding|ligase activity				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			GACCTAACTCCTATGCATGGG	0.587													12	23					0	0	1	0	0
ACSF2	80221	broad.mit.edu	37	17	48541212	48541212	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48541212C>T	uc002iqu.2	+	9	1184	c.1080C>T	c.(1078-1080)TTC>TTT	p.F360F	ACSF2_uc010wml.1_Silent_p.F317F|ACSF2_uc010wmm.1_Silent_p.F385F|ACSF2_uc010wmn.1_Silent_p.F347F|ACSF2_uc010wmo.1_Silent_p.F200F	NM_025149	NP_079425	Q96CM8	ACSF2_HUMAN	acyl-CoA synthetase family member 2 precursor	360					fatty acid metabolic process	mitochondrion	ATP binding|ligase activity				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			CCACGATGTTCGTGGACATTC	0.577													46	97					0	0	1	0	0
CHAD	1101	broad.mit.edu	37	17	48545818	48545818	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48545818G>A	uc010dbr.2	-	1	410	c.357C>T	c.(355-357)TTC>TTT	p.F119F	ACSF2_uc002iqu.2_Intron|ACSF2_uc010wml.1_Intron|ACSF2_uc010wmm.1_Intron|ACSF2_uc010wmn.1_Intron|ACSF2_uc010wmo.1_Intron|CHAD_uc010dbs.2_Silent_p.F119F|ACSF2_uc010dbt.1_Intron	NM_001267	NP_001258	O15335	CHAD_HUMAN	chondroadherin precursor	119	LRR 2.				regulation of cell growth	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(2)|central_nervous_system(1)	3	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			TCAGGTCGTCGAAGGCACCTG	0.617													8	83					0	0	1	0	0
RSAD1	55316	broad.mit.edu	37	17	48559733	48559733	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48559733C>T	uc002iqw.1	+	4	812	c.756C>T	c.(754-756)CTC>CTT	p.L252L	RSAD1_uc010wmq.1_RNA	NM_018346	NP_060816	Q9HA92	RSAD1_HUMAN	radical S-adenosyl methionine domain containing	252					porphyrin biosynthetic process	mitochondrion	4 iron, 4 sulfur cluster binding|coproporphyrinogen oxidase activity|metal ion binding				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			ACCCGGAGCTCGCAGCTGAGA	0.647											OREG0024567	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	79					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48593948	48593948	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48593948G>A	uc010wmr.1	+	2	385	c.223G>A	c.(223-225)GGA>AGA	p.G75R	MYCBPAP_uc002iqx.2_Missense_Mutation_p.G75R|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	38					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			GCGGGCAAAGGGACCTGAACA	0.388													7	60					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48595010	48595010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48595010G>A	uc010wmr.1	+	4	710	c.548G>A	c.(547-549)GGG>GAG	p.G183E	MYCBPAP_uc002iqx.2_Missense_Mutation_p.G183E|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	146					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CACATCTTGGGGAGTCTCCAG	0.512													27	40					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48596379	48596379	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48596379G>A	uc010wmr.1	+	6	988	c.826G>A	c.(826-828)GAG>AAG	p.E276K	MYCBPAP_uc002iqx.2_Missense_Mutation_p.E276K|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	239					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			GCACACCGGGGAGACCTACAG	0.582													19	50					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48598515	48598515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48598515C>T	uc010wmr.1	+	8	1252	c.1090C>T	c.(1090-1092)CGG>TGG	p.R364W	MYCBPAP_uc002iqx.2_Missense_Mutation_p.R364W|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	327					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CACCTGGGATCGGAGTCTGTT	0.567													10	20					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48603334	48603334	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48603334G>A	uc010wmr.1	+	14	2166	c.2004G>A	c.(2002-2004)GGG>GGA	p.G668G	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	631					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CCAGGCCAGGGGACAAGGAGC	0.597													38	143					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48603616	48603616	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48603616G>A	uc010wmr.1	+	14	2448	c.2286G>A	c.(2284-2286)GAG>GAA	p.E762E	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	725					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			TCTGCTTGGAGGACTTCAGAA	0.577													19	153					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48606480	48606480	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48606480C>T	uc010wmr.1	+	18	2946	c.2784C>T	c.(2782-2784)ATC>ATT	p.I928I	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	891					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CCCCTGACATCATCCTCTCTT	0.517													21	47					0	0	1	0	0
SPATA20	64847	broad.mit.edu	37	17	48626319	48626319	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48626319C>T	uc002irf.2	+	4	603	c.462C>T	c.(460-462)TTC>TTT	p.F154F	SPATA20_uc002irc.2_5'UTR|SPATA20_uc002ire.2_Silent_p.F110F|SPATA20_uc002ird.2_Silent_p.F170F|SPATA20_uc010wmv.1_Silent_p.F154F|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	154					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			ACATGACGTTCGTGCAGGTGA	0.627													12	41					0	0	1	0	0
SPATA20	64847	broad.mit.edu	37	17	48628106	48628106	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48628106C>T	uc002irf.2	+	10	1304	c.1163C>T	c.(1162-1164)CCC>CTC	p.P388L	SPATA20_uc002irc.2_Missense_Mutation_p.P55L|SPATA20_uc002ire.2_Missense_Mutation_p.P344L|SPATA20_uc002ird.2_Missense_Mutation_p.P404L|SPATA20_uc010wmv.1_3'UTR|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	388					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			GCAGACTCGCCCCCAGAGCGG	0.672											OREG0024568	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	103					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48652918	48652918	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48652918C>T	uc002irk.1	+	8	1527	c.1155C>T	c.(1153-1155)TTC>TTT	p.F385F	CACNA1G_uc002iri.1_Silent_p.F385F|CACNA1G_uc002irj.1_Silent_p.F385F|CACNA1G_uc002irl.1_Silent_p.F385F|CACNA1G_uc002irm.1_Silent_p.F385F|CACNA1G_uc002irn.1_Silent_p.F385F|CACNA1G_uc002iro.1_Silent_p.F385F|CACNA1G_uc002irp.1_Silent_p.F385F|CACNA1G_uc002irq.1_Silent_p.F385F|CACNA1G_uc002irr.1_Silent_p.F385F|CACNA1G_uc002irs.1_Silent_p.F385F|CACNA1G_uc002irt.1_Silent_p.F385F|CACNA1G_uc002irv.1_Silent_p.F385F|CACNA1G_uc002irw.1_Silent_p.F385F|CACNA1G_uc002iru.1_Silent_p.F385F|CACNA1G_uc002irx.1_Silent_p.F298F|CACNA1G_uc002iry.1_Silent_p.F298F|CACNA1G_uc002irz.1_Silent_p.F298F|CACNA1G_uc002isa.1_Silent_p.F298F|CACNA1G_uc002isb.1_Silent_p.F298F|CACNA1G_uc002isc.1_Silent_p.F298F|CACNA1G_uc002isd.1_Silent_p.F298F|CACNA1G_uc002ise.1_Silent_p.F298F|CACNA1G_uc002isf.1_Silent_p.F298F|CACNA1G_uc002isg.1_Silent_p.F298F|CACNA1G_uc002ish.1_Silent_p.F298F|CACNA1G_uc002isi.1_Silent_p.F298F	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	385	I.|Helical; Name=S6 of repeat I; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GCTCCTTCTTCATGATCAACC	0.463													13	26					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48667926	48667926	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48667926C>T	uc002irk.1	+	10	2768	c.2396C>T	c.(2395-2397)CCC>CTC	p.P799L	CACNA1G_uc002iri.1_Missense_Mutation_p.P799L|CACNA1G_uc002irj.1_Missense_Mutation_p.P799L|CACNA1G_uc002irl.1_Missense_Mutation_p.P799L|CACNA1G_uc002irm.1_Missense_Mutation_p.P799L|CACNA1G_uc002irn.1_Missense_Mutation_p.P799L|CACNA1G_uc002iro.1_Missense_Mutation_p.P799L|CACNA1G_uc002irp.1_Missense_Mutation_p.P799L|CACNA1G_uc002irq.1_Missense_Mutation_p.P799L|CACNA1G_uc002irr.1_Missense_Mutation_p.P799L|CACNA1G_uc002irs.1_Missense_Mutation_p.P799L|CACNA1G_uc002irt.1_Missense_Mutation_p.P799L|CACNA1G_uc002irv.1_Missense_Mutation_p.P799L|CACNA1G_uc002irw.1_Missense_Mutation_p.P799L|CACNA1G_uc002iru.1_Missense_Mutation_p.P799L|CACNA1G_uc002irx.1_Missense_Mutation_p.P712L|CACNA1G_uc002iry.1_Missense_Mutation_p.P712L|CACNA1G_uc002irz.1_Missense_Mutation_p.P712L|CACNA1G_uc002isa.1_Missense_Mutation_p.P712L|CACNA1G_uc002isb.1_Missense_Mutation_p.P712L|CACNA1G_uc002isc.1_Missense_Mutation_p.P712L|CACNA1G_uc002isd.1_Missense_Mutation_p.P712L|CACNA1G_uc002ise.1_Missense_Mutation_p.P712L|CACNA1G_uc002isf.1_Missense_Mutation_p.P712L|CACNA1G_uc002isg.1_Missense_Mutation_p.P712L|CACNA1G_uc002ish.1_Missense_Mutation_p.P712L|CACNA1G_uc002isi.1_Missense_Mutation_p.P712L	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	799	Helical; Name=S2 of repeat II; (Potential).|II.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GTGTATGGTCCCTTTGGCTAC	0.517													8	40					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48677180	48677180	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48677180C>T	uc002irk.1	+	17	4022	c.3650C>T	c.(3649-3651)CCC>CTC	p.P1217L	CACNA1G_uc002iri.1_Missense_Mutation_p.P1217L|CACNA1G_uc002irj.1_Missense_Mutation_p.P1194L|CACNA1G_uc002irl.1_Missense_Mutation_p.P1194L|CACNA1G_uc002irm.1_Missense_Mutation_p.P1194L|CACNA1G_uc002irn.1_Missense_Mutation_p.P1194L|CACNA1G_uc002iro.1_Missense_Mutation_p.P1194L|CACNA1G_uc002irp.1_Missense_Mutation_p.P1217L|CACNA1G_uc002irq.1_Missense_Mutation_p.P1194L|CACNA1G_uc002irr.1_Missense_Mutation_p.P1217L|CACNA1G_uc002irs.1_Missense_Mutation_p.P1217L|CACNA1G_uc002irt.1_Missense_Mutation_p.P1217L|CACNA1G_uc002irv.1_Missense_Mutation_p.P1217L|CACNA1G_uc002irw.1_Missense_Mutation_p.P1194L|CACNA1G_uc002iru.1_Missense_Mutation_p.P1194L|CACNA1G_uc002irx.1_Missense_Mutation_p.P1130L|CACNA1G_uc002iry.1_Missense_Mutation_p.P1130L|CACNA1G_uc002irz.1_Missense_Mutation_p.P1130L|CACNA1G_uc002isa.1_Missense_Mutation_p.P1130L|CACNA1G_uc002isb.1_Missense_Mutation_p.P1130L|CACNA1G_uc002isc.1_Missense_Mutation_p.P1130L|CACNA1G_uc002isd.1_Missense_Mutation_p.P1130L|CACNA1G_uc002ise.1_Missense_Mutation_p.P1130L|CACNA1G_uc002isf.1_Missense_Mutation_p.P1130L|CACNA1G_uc002isg.1_Missense_Mutation_p.P1130L|CACNA1G_uc002ish.1_Missense_Mutation_p.P1130L|CACNA1G_uc002isi.1_Missense_Mutation_p.P1107L|CACNA1G_uc002isj.2_5'UTR	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1217	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CCTGATGACCCCCCACTGGAT	0.667													5	33					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48678421	48678422	+	Silent	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48678421_48678422CC>TT	uc002irk.1	+	19	4173_4174	c.3801_3802CC>TT	c.(3799-3804)CTCCTG>CTTTTG	p.1267_1268LL>LL	CACNA1G_uc002iri.1_Silent_p.1267_1268LL>LL|CACNA1G_uc002irj.1_Silent_p.1244_1245LL>LL|CACNA1G_uc002irl.1_Silent_p.1244_1245LL>LL|CACNA1G_uc002irm.1_Silent_p.1244_1245LL>LL|CACNA1G_uc002irn.1_Silent_p.1244_1245LL>LL|CACNA1G_uc002iro.1_Silent_p.1244_1245LL>LL|CACNA1G_uc002irp.1_Silent_p.1267_1268LL>LL|CACNA1G_uc002irq.1_Silent_p.1244_1245LL>LL|CACNA1G_uc002irr.1_Silent_p.1267_1268LL>LL|CACNA1G_uc002irs.1_Silent_p.1267_1268LL>LL|CACNA1G_uc002irt.1_Silent_p.1267_1268LL>LL|CACNA1G_uc002irv.1_Silent_p.1267_1268LL>LL|CACNA1G_uc002irw.1_Silent_p.1244_1245LL>LL|CACNA1G_uc002iru.1_Silent_p.1244_1245LL>LL|CACNA1G_uc002irx.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002iry.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002irz.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002isa.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002isb.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002isc.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002isd.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002ise.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002isf.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002isg.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002ish.1_Silent_p.1180_1181LL>LL|CACNA1G_uc002isi.1_Silent_p.1157_1158LL>LL|CACNA1G_uc002isj.2_5'UTR	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1267_1268	Cytoplasmic (Potential).|III.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GGTTCCGCCTCCTGTGTCACCG	0.624													55	85					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48697087	48697087	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48697087C>T	uc002irk.1	+	34	6197	c.5825C>T	c.(5824-5826)TCC>TTC	p.S1942F	CACNA1G_uc002irj.1_Intron|CACNA1G_uc002irl.1_Intron|CACNA1G_uc002irm.1_Missense_Mutation_p.S1908F|CACNA1G_uc002irn.1_Intron|CACNA1G_uc002iro.1_Intron|CACNA1G_uc002irp.1_Missense_Mutation_p.S1942F|CACNA1G_uc002irq.1_Missense_Mutation_p.S1919F|CACNA1G_uc002irr.1_Intron|CACNA1G_uc002irs.1_Missense_Mutation_p.S1931F|CACNA1G_uc002irt.1_Intron|CACNA1G_uc002irv.1_Intron|CACNA1G_uc002irw.1_Intron|CACNA1G_uc002iru.1_Missense_Mutation_p.S1908F|CACNA1G_uc002irx.1_Intron|CACNA1G_uc002iry.1_Intron|CACNA1G_uc002irz.1_Intron|CACNA1G_uc002isa.1_Intron|CACNA1G_uc002isb.1_Intron|CACNA1G_uc002isc.1_Missense_Mutation_p.S1844F|CACNA1G_uc002isd.1_Intron|CACNA1G_uc002ise.1_Missense_Mutation_p.S1810F|CACNA1G_uc002isf.1_Missense_Mutation_p.S1837F|CACNA1G_uc002isg.1_Intron|CACNA1G_uc002ish.1_Intron|CACNA1G_uc002isi.1_Intron	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1942	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	ATCCAGGGCTCCCTGGAGTGG	0.682													4	18					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48703660	48703660	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48703660C>T	uc002irk.1	+	38	7054	c.6682C>T	c.(6682-6684)CTC>TTC	p.L2228F	CACNA1G_uc002irj.1_Intron|CACNA1G_uc002irl.1_Missense_Mutation_p.L2112F|CACNA1G_uc002irm.1_Missense_Mutation_p.L2149F|CACNA1G_uc002irn.1_Missense_Mutation_p.L2094F|CACNA1G_uc002iro.1_Missense_Mutation_p.L2101F|CACNA1G_uc002irp.1_Missense_Mutation_p.L2183F|CACNA1G_uc002irq.1_Missense_Mutation_p.L2205F|CACNA1G_uc002irr.1_Missense_Mutation_p.L2135F|CACNA1G_uc002irs.1_Missense_Mutation_p.L2172F|CACNA1G_uc002irt.1_Missense_Mutation_p.L2117F|CACNA1G_uc002irv.1_Missense_Mutation_p.L2124F|CACNA1G_uc002irw.1_Missense_Mutation_p.L2157F|CACNA1G_uc002iru.1_Missense_Mutation_p.L2194F|CACNA1G_uc002irx.1_Intron|CACNA1G_uc002iry.1_Intron|CACNA1G_uc002irz.1_Missense_Mutation_p.L2041F|CACNA1G_uc002isa.1_Missense_Mutation_p.L2014F|CACNA1G_uc002isb.1_Missense_Mutation_p.L2055F|CACNA1G_uc002isc.1_Missense_Mutation_p.L2130F|CACNA1G_uc002isd.1_Missense_Mutation_p.L2023F|CACNA1G_uc002ise.1_Missense_Mutation_p.L2051F|CACNA1G_uc002isf.1_Missense_Mutation_p.L2078F|CACNA1G_uc002isg.1_Missense_Mutation_p.L1996F|CACNA1G_uc002ish.1_Missense_Mutation_p.L2003F|CACNA1G_uc002isi.1_Missense_Mutation_p.L1991F	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	2228	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TTCAGGAGACCTCCTGCCCCC	0.662											OREG0024569	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	50					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48733332	48733332	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48733332G>A	uc002isl.2	+	2	265	c.185G>A	c.(184-186)GGC>GAC	p.G62D	ABCC3_uc002isk.3_Missense_Mutation_p.G62D	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	62	Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CATTGTCGTGGCTACATCATC	0.582													15	48					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48734526	48734526	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48734526C>T	uc002isl.2	+	4	548	c.468C>T	c.(466-468)ATC>ATT	p.I156I	ABCC3_uc002isk.3_Silent_p.I156I	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	156	Extracellular (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GCTCCAAGATCCTTTTAGCCA	0.567													47	118					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48736725	48736725	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48736725G>A	uc002isl.2	+	7	882	c.802G>A	c.(802-804)GCA>ACA	p.A268T	ABCC3_uc002isk.3_Missense_Mutation_p.A268T	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	268	Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	AAAGCAGACGGCACGGTGAGG	0.622													21	69					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48746744	48746744	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48746744G>A	uc002isl.2	+	17	2176	c.2096G>A	c.(2095-2097)TGG>TAG	p.W699*		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	699	ABC transporter 1.|Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CAGCAGGCATGGATCCAGAAC	0.612													23	64					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48753410	48753410	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48753410C>T	uc002isl.2	+	22	3106	c.3026C>T	c.(3025-3027)TCC>TTC	p.S1009F	ABCC3_uc002isn.2_5'Flank	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1009	ABC transmembrane type-1 2.|Extracellular (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	AACAACACTTCCCTGAGGCTG	0.547													21	34					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48753420	48753420	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48753420G>A	uc002isl.2	+	22	3116	c.3036G>A	c.(3034-3036)CTG>CTA	p.L1012L	ABCC3_uc002isn.2_5'Flank	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1012	ABC transmembrane type-1 2.|Extracellular (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CCCTGAGGCTGGGCGTCTATG	0.557													5	48					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48755478	48755478	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48755478C>T	uc002isl.2	+	25	3683	c.3603C>T	c.(3601-3603)TTC>TTT	p.F1201F	ABCC3_uc002isn.2_5'Flank	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1201	Helical; Name=16; (By similarity).|ABC transmembrane type-1 2.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GAGTGGAGTTCGTGGGGAACT	0.602													55	55					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48762084	48762084	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48762084C>T	uc002isl.2	+	29	4208	c.4128C>T	c.(4126-4128)TTC>TTT	p.F1376F	ABCC3_uc002isn.2_Silent_p.F130F	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1376	Cytoplasmic (By similarity).|ABC transporter 2.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CCATCCTGTTCTCGGGGACCC	0.602													25	90					0	0	1	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917308	48917308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48917308C>T	uc002isv.3	+	2	1353	c.659C>T	c.(658-660)TCG>TTG	p.S220L	WFIKKN2_uc010dbu.2_Missense_Mutation_p.S127L	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	220	Ig-like C2-type.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GTGCACCAGTCGGTCACCATG	0.637													14	48					0	0	1	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917519	48917519	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48917519G>A	uc002isv.3	+	2	1564	c.870G>A	c.(868-870)CGG>CGA	p.R290R	WFIKKN2_uc010dbu.2_Silent_p.R197R	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	290	Ig-like C2-type.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GCACGGCCCGGAACGTGGCTG	0.622													19	56					0	0	1	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917687	48917687	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:48917687C>T	uc002isv.3	+	2	1732	c.1038C>T	c.(1036-1038)TTC>TTT	p.F346F	WFIKKN2_uc010dbu.2_Silent_p.F253F	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	346	BPTI/Kunitz inhibitor 1.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GCTGGCACTTCGATGCCCAGG	0.622													25	65					0	0	1	0	0
CA10	56934	broad.mit.edu	37	17	49710967	49710967	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:49710967G>A	uc002itw.3	-	8	1820	c.834C>T	c.(832-834)ATC>ATT	p.I278I	CA10_uc002itu.3_Silent_p.I207I|CA10_uc002itv.3_Silent_p.I284I|CA10_uc002itx.3_Silent_p.I278I|CA10_uc002ity.3_Silent_p.I278I|CA10_uc002itz.2_Silent_p.I278I	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	278					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			TGCTCAGAAAGATCTGAGATG	0.512													21	67					0	0	1	0	0
CA10	56934	broad.mit.edu	37	17	49726605	49726605	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:49726605G>A	uc002itw.3	-	6	1558	c.572C>T	c.(571-573)TCA>TTA	p.S191L	CA10_uc002itu.3_Missense_Mutation_p.S120L|CA10_uc002itv.3_Missense_Mutation_p.S197L|CA10_uc002itx.3_Missense_Mutation_p.S191L|CA10_uc002ity.3_Missense_Mutation_p.S191L|CA10_uc002itz.2_Missense_Mutation_p.S191L	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	191					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			TGGGTTTGATGAATCAGAAAC	0.333													26	60					0	0	1	0	0
CA10	56934	broad.mit.edu	37	17	49825032	49825033	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:49825032_49825033CC>TT	uc002itw.3	-	4	1411_1412	c.425_426GG>AA	c.(424-426)GGG>GAA	p.G142E	CA10_uc002itu.3_Missense_Mutation_p.G71E|CA10_uc002itv.3_Missense_Mutation_p.G148E|CA10_uc002itx.3_Missense_Mutation_p.G142E|CA10_uc002ity.3_Missense_Mutation_p.G142E|CA10_uc002itz.2_Missense_Mutation_p.G142E	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	142					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			GGTGCTCCGACCCTTGGCTGTC	0.51													57	131					0	0	1	0	0
CA10	56934	broad.mit.edu	37	17	50008373	50008373	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:50008373G>A	uc002itw.3	-	3	1242	c.256C>T	c.(256-258)CGC>TGC	p.R86C	CA10_uc002itv.3_Missense_Mutation_p.R92C|CA10_uc002itx.3_Missense_Mutation_p.R86C|CA10_uc002ity.3_Missense_Mutation_p.R86C|CA10_uc002itz.2_Missense_Mutation_p.R86C	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	86					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			GTGTTGATGCGAAGAGGTGTC	0.502													68	203					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51901192	51901192	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:51901192C>T	uc002iua.2	+	1	954	c.798C>T	c.(796-798)TTC>TTT	p.F266F	uc010wna.1_Intron	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	266	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CCTTCTGCTTCGACCATGCCT	0.557													5	69					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51901282	51901282	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:51901282G>A	uc002iua.2	+	1	1044	c.888G>A	c.(886-888)ATG>ATA	p.M296I	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	296	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						GCAAGGGCATGGCCACCTGCT	0.552													26	74					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51901844	51901844	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:51901844G>A	uc002iua.2	+	1	1606	c.1450G>A	c.(1450-1452)GCT>ACT	p.A484T	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	484					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						ATGTATTCTGGCTTTGGGTCA	0.507													8	37					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51902119	51902119	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:51902119C>T	uc002iua.2	+	1	1881	c.1725C>T	c.(1723-1725)TCC>TCT	p.S575S	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	575					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CAGAAATGTCCCTTCAGAGGG	0.403													20	71					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51902127	51902127	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:51902127G>A	uc002iua.2	+	1	1889	c.1733G>A	c.(1732-1734)AGG>AAG	p.R578K	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	578					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TCCCTTCAGAGGGATGAATTT	0.418													32	63					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51902233	51902233	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:51902233G>A	uc002iua.2	+	1	1995	c.1839G>A	c.(1837-1839)GGG>GGA	p.G613G	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	613					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CAATTTCAGGGAAGGGATCTA	0.423													25	95					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51902356	51902356	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:51902356G>A	uc002iua.2	+	1	2118	c.1962G>A	c.(1960-1962)GAG>GAA	p.E654E	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	654	Potential.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CTCTGACCGAGATCCAAAAGA	0.448													12	50					0	0	1	0	0
HLF	3131	broad.mit.edu	37	17	53342917	53342917	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:53342917C>T	uc002iug.1	+	1	597	c.72C>T	c.(70-72)TCC>TCT	p.S24S	HLF_uc010dce.1_5'Flank|HLF_uc002iuh.2_5'Flank|HLF_uc010wni.1_5'Flank	NM_002126	NP_002117	Q16534	HLF_HUMAN	hepatic leukemia factor	24					multicellular organismal development|rhythmic process|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TGCTCAGGTCCCTGCTGGAGA	0.642			T	TCF3	ALL								4	30					0	0	1	0	0
HLF	3131	broad.mit.edu	37	17	53345298	53345298	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:53345298C>T	uc002iug.1	+	2	827	c.302C>T	c.(301-303)CCA>CTA	p.P101L	HLF_uc010dce.1_Missense_Mutation_p.P16L|HLF_uc002iuh.2_Missense_Mutation_p.P16L|HLF_uc010wni.1_Missense_Mutation_p.H50Y	NM_002126	NP_002117	Q16534	HLF_HUMAN	hepatic leukemia factor	101					multicellular organismal development|rhythmic process|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						CCCCCCAGCCCATCTCAGCAT	0.577			T	TCF3	ALL								58	145					0	0	1	0	0
HLF	3131	broad.mit.edu	37	17	53398087	53398087	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:53398087C>T	uc002iug.1	+	4	1260	c.735C>T	c.(733-735)GCC>GCT	p.A245A	HLF_uc010dce.1_Silent_p.A160A|HLF_uc002iuh.2_Silent_p.A160A|HLF_uc010wni.1_Silent_p.A192A	NM_002126	NP_002117	Q16534	HLF_HUMAN	hepatic leukemia factor	245	Basic motif.				multicellular organismal development|rhythmic process|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						CCCGCGACGCCCGGAGGCTGA	0.567			T	TCF3	ALL								11	42					0	0	1	0	0
MMD	23531	broad.mit.edu	37	17	53488740	53488740	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:53488740G>A	uc002iui.2	-	3	432	c.147C>T	c.(145-147)CTC>CTT	p.L49L		NM_012329	NP_036461	Q15546	PAQRB_HUMAN	monocyte to macrophage	49	Helical; (Potential).				cytolysis	integral to plasma membrane|late endosome membrane|lysosomal membrane|membrane fraction	receptor activity				0						ACAGCCGATGGAGGAGGGCAC	0.438													8	48					0	0	1	0	0
ANKFN1	162282	broad.mit.edu	37	17	54450144	54450144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:54450144G>A	uc002iun.1	+	6	783	c.748G>A	c.(748-750)GCT>ACT	p.A250T		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	250										large_intestine(1)|ovary(1)	2						GCAGCTGAAAGCTTGGGAGTG	0.498													42	118					0	0	1	0	0
ANKFN1	162282	broad.mit.edu	37	17	54517740	54517740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:54517740G>A	uc002iun.1	+	8	1007	c.972G>A	c.(970-972)ATG>ATA	p.M324I		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	324	Fibronectin type-III.									large_intestine(1)|ovary(1)	2						AAATCATCATGGATAATCTGC	0.448													19	58					0	0	1	0	0
ANKFN1	162282	broad.mit.edu	37	17	54535276	54535277	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:54535276_54535277CC>TT	uc002iun.1	+	13	1537_1538	c.1502_1503CC>TT	c.(1501-1503)TCC>TTT	p.S501F		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	501										large_intestine(1)|ovary(1)	2						ATACCAATATCCTCATCCTCAT	0.5													35	75					0	0	1	0	0
ANKFN1	162282	broad.mit.edu	37	17	54554948	54554948	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:54554948C>T	uc002iun.1	+	15	1917	c.1882C>T	c.(1882-1884)CTT>TTT	p.L628F		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	628										large_intestine(1)|ovary(1)	2						AATCAAAGTTCTTGTTACCCA	0.393													49	116					0	0	1	0	0
NOG	9241	broad.mit.edu	37	17	54672217	54672217	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:54672217G>A	uc002iup.2	+	1	1158	c.633G>A	c.(631-633)GGG>GGA	p.G211G		NM_005450	NP_005441	Q13253	NOGG_HUMAN	noggin precursor	211					BMP signaling pathway|cartilage development|cell differentiation in hindbrain|dorsal/ventral pattern formation|embryonic digit morphogenesis|embryonic skeletal joint morphogenesis|epithelial to mesenchymal transition|fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation|middle ear morphogenesis|negative regulation of astrocyte differentiation|negative regulation of BMP signaling pathway|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of cytokine activity|negative regulation of osteoblast differentiation|osteoblast differentiation|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of glomerulus development|somatic stem cell maintenance|wound healing	extracellular space	cytokine binding|protein homodimerization activity				0	Breast(9;5.24e-08)					AGCGGCGCGGGGGCCAGCGCT	0.672													3	12					0	0	1	0	0
DGKE	8526	broad.mit.edu	37	17	54925355	54925355	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:54925355C>T	uc002iur.2	+	5	997	c.817C>T	c.(817-819)CGA>TGA	p.R273*	DGKE_uc002ius.1_Nonsense_Mutation_p.R273*	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	273	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					TTATTCAGCTCGAGTACTTGT	0.388													22	77					0	0	1	0	0
DGKE	8526	broad.mit.edu	37	17	54925375	54925375	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:54925375G>A	uc002iur.2	+	5	1017	c.837G>A	c.(835-837)GGG>GGA	p.G279G	DGKE_uc002ius.1_Silent_p.G279G	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	279	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					TTTGTGGAGGGGATGGGACTG	0.398													16	77					0	0	1	0	0
TRIM25	7706	broad.mit.edu	37	17	54972922	54972922	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:54972922G>A	uc002iut.2	-	7	1284	c.1224C>T	c.(1222-1224)GCC>GCT	p.A408A	TRIM25_uc010dcj.2_Silent_p.A200A	NM_005082	NP_005073	Q14258	TRI25_HUMAN	tripartite motif-containing 25	408	Interaction with influenza A virus NS1.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|response to virus	cell junction|cytosol|nucleus	sequence-specific DNA binding transcription factor activity|ubiquitin-protein ligase activity|zinc ion binding			lung(1)|breast(1)|skin(1)	3	Breast(9;6.15e-08)					ACTGTTCCGGGGCTCCAAACG	0.517													18	181					0	0	1	0	0
AKAP1	8165	broad.mit.edu	37	17	55183954	55183954	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:55183954C>T	uc002iux.2	+	2	1360	c.1129C>T	c.(1129-1131)CAG>TAG	p.Q377*	AKAP1_uc010wnl.1_Nonsense_Mutation_p.Q377*|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Nonsense_Mutation_p.Q377*	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	377					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					TCGTGTGTGTCAGGCCAGTCA	0.577													16	94					0	0	1	0	0
AKAP1	8165	broad.mit.edu	37	17	55184358	55184358	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:55184358C>T	uc002iux.2	+	2	1764	c.1533C>T	c.(1531-1533)TTC>TTT	p.F511F	AKAP1_uc010wnl.1_Silent_p.F511F|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Silent_p.F511F	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	511					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					CAGATTCTTTCAGCACTTCAG	0.567													68	185					0	0	1	0	0
MSI2	124540	broad.mit.edu	37	17	55704618	55704618	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:55704618C>T	uc002iuz.1	+	10	854	c.681C>T	c.(679-681)GGC>GGT	p.G227G	MSI2_uc010wnm.1_Silent_p.G205G|MSI2_uc002iva.2_Silent_p.G223G	NM_138962	NP_620412	Q96DH6	MSI2H_HUMAN	musashi 2 isoform a	227						cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)|pancreas(1)	2	Breast(9;1.78e-08)			GBM - Glioblastoma multiforme(1;0.0025)		CGACCTATGGCCGTGGCTACC	0.537			T	HOXA9	CML								42	116					0	0	1	0	0
CUEDC1	404093	broad.mit.edu	37	17	55962752	55962752	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:55962752G>A	uc002ivd.1	-	2	893	c.174C>T	c.(172-174)TTC>TTT	p.F58F	CUEDC1_uc002ive.1_Silent_p.F58F	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1	58	CUE.									skin(2)	2						CCATGTTGGGGAACATGGTCT	0.567													33	55					0	0	1	0	0
OR4D1	26689	broad.mit.edu	37	17	56232592	56232592	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56232592C>T	uc010wno.1	+	1	78	c.78C>T	c.(76-78)TTC>TTT	p.F26F	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCAGAAATTCCTGTTCCTTC	0.478													66	162					0	0	1	0	0
OR4D1	26689	broad.mit.edu	37	17	56233058	56233058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56233058C>T	uc010wno.1	+	1	544	c.544C>T	c.(544-546)CCC>TCC	p.P182S	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGTGATGTTCCCCAAGTACT	0.517													46	113					0	0	1	0	0
OR4D1	26689	broad.mit.edu	37	17	56233261	56233261	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56233261G>A	uc010wno.1	+	1	747	c.747G>A	c.(745-747)ATG>ATA	p.M249I	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGGTGTCCATGATCTTCATTC	0.522													11	78					0	0	1	0	0
EPX	8288	broad.mit.edu	37	17	56271342	56271342	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56271342G>A	uc002ivq.2	+	5	569	c.483G>A	c.(481-483)GGG>GGA	p.G161G		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	161					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						CCTTGCTAGGGGCCTCCAACC	0.667													15	40					0	0	1	0	0
EPX	8288	broad.mit.edu	37	17	56271348	56271348	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56271348C>T	uc002ivq.2	+	5	575	c.489C>T	c.(487-489)TCC>TCT	p.S163S		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	163				S -> C (in Ref. 3; AA sequence).	hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						TAGGGGCCTCCAACCAGGCTC	0.667													16	41					0	0	1	0	0
EPX	8288	broad.mit.edu	37	17	56276946	56276946	+	Missense_Mutation	SNP	G	A	A	rs149447728		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56276946G>A	uc002ivq.2	+	9	1414	c.1328G>A	c.(1327-1329)CGG>CAG	p.R443Q		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	443					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						GGCAAGGCCCGGGCCAGGAGA	0.597													37	48					0	0	1	0	0
EPX	8288	broad.mit.edu	37	17	56277733	56277733	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56277733G>A	uc002ivq.2	+	10	1771	c.1685G>A	c.(1684-1686)CGA>CAA	p.R562Q		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	562					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						AACATGCAACGAAGCCGGGAC	0.617											OREG0024608	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	70					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56324854	56324854	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56324854G>A	uc002ivt.2	+	4	496	c.180G>A	c.(178-180)ATG>ATA	p.M60I	LPO_uc010dco.2_Missense_Mutation_p.M60I|LPO_uc010wnr.1_Intron|LPO_uc010wns.1_Missense_Mutation_p.M1I|LPO_uc010dcp.2_Intron|LPO_uc010dcq.2_5'Flank	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	60					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						AGACCGCCATGAGCTCTGAGA	0.632													18	53					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56342232	56342232	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56342232C>T	uc002ivt.2	+	10	1732	c.1416C>T	c.(1414-1416)CCC>CCT	p.P472P	LPO_uc010wns.1_Silent_p.P413P|LPO_uc010dcp.2_Silent_p.P389P|LPO_uc010dcq.2_Silent_p.P143P|LPO_uc010dcr.2_Silent_p.P35P	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	472					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						TGGAGGTCCCCTCTAGTATGT	0.517													28	59					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56343630	56343630	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56343630C>T	uc002ivt.2	+	11	1952	c.1636C>T	c.(1636-1638)CAT>TAT	p.H546Y	LPO_uc010wns.1_Missense_Mutation_p.H487Y|LPO_uc010dcp.2_Missense_Mutation_p.H463Y|LPO_uc010dcq.2_Missense_Mutation_p.H217Y|LPO_uc010dcr.2_Missense_Mutation_p.H109Y	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	546					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						TCACAGGATCCATGGCTTTGA	0.532													4	44					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56345178	56345178	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56345178G>A	uc002ivt.2	+	13	2278	c.1962G>A	c.(1960-1962)ACG>ACA	p.T654T	LPO_uc010wns.1_Silent_p.T595T|LPO_uc010dcp.2_Silent_p.T571T|LPO_uc010dcq.2_Silent_p.T325T|LPO_uc010dcr.2_Silent_p.T217T	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	654					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GGGTCTTCACGAACGAGCAGA	0.572													21	50					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56345295	56345295	+	Silent	SNP	C	T	T	rs149585110	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56345295C>T	uc002ivt.2	+	13	2395	c.2079C>T	c.(2077-2079)TTC>TTT	p.F693F	LPO_uc010wns.1_Silent_p.F634F|LPO_uc010dcp.2_Silent_p.F610F|LPO_uc010dcq.2_Silent_p.F364F|LPO_uc010dcr.2_Silent_p.F256F	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	693					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						CCTATGACTTCGTGGATTGCT	0.567													44	85					0	0	1	0	0
MPO	4353	broad.mit.edu	37	17	56349080	56349081	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56349080_56349081GG>AT	uc002ivu.1	-	11	2142_2143	c.1965_1966CC>AT	c.(1963-1968)GGCCGC>GGATGC	p.R656C		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	656					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	GGGCCCACGCGGCCTTTGCGCT	0.634													13	36					0	0	1	0	0
MPO	4353	broad.mit.edu	37	17	56350260	56350260	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56350260G>A	uc002ivu.1	-	10	1818	c.1641C>T	c.(1639-1641)CTC>CTT	p.L547L		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	547					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	TGAGGCCCCGGAGGATGGGGT	0.572													59	182					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386213	56386213	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56386213G>A	uc002ivx.3	-	22	5291	c.4420C>T	c.(4420-4422)CGG>TGG	p.R1474W	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.R1414W|BZRAP1_uc010wnt.1_Missense_Mutation_p.R1474W	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1474						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAGCACCTCCGGGAAGGGCCC	0.657													13	26					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386285	56386285	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56386285C>T	uc002ivx.3	-	22	5219	c.4348G>A	c.(4348-4350)GGT>AGT	p.G1450S	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.G1390S|BZRAP1_uc010wnt.1_Missense_Mutation_p.G1450S	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1450						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGGAGGCCACCCCTCTCCCGT	0.697													23	45					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386606	56386606	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56386606C>T	uc002ivx.3	-	22	4898	c.4027G>A	c.(4027-4029)GAG>AAG	p.E1343K	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.E1283K|BZRAP1_uc010wnt.1_Missense_Mutation_p.E1343K	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1343	Poly-Glu.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					tcctcctcctcgtcctcctct	0.478													18	39					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386636	56386636	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56386636G>A	uc002ivx.3	-	22	4868	c.3997C>T	c.(3997-3999)CCG>TCG	p.P1333S	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.P1273S|BZRAP1_uc010wnt.1_Missense_Mutation_p.P1333S	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1333						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					tcctcctccGGGATGCTAAAG	0.468													16	46					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386727	56386727	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56386727G>A	uc002ivx.3	-	22	4777	c.3906C>T	c.(3904-3906)CCC>CCT	p.P1302P	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Silent_p.P1242P|BZRAP1_uc010wnt.1_Silent_p.P1302P	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1302						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCTCACAAAAGGGGTCGGGCT	0.557													16	39					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56387432	56387432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56387432C>T	uc002ivx.3	-	21	4658	c.3787G>A	c.(3787-3789)GAA>AAA	p.E1263K	BZRAP1_uc010dcs.2_Missense_Mutation_p.E1203K|BZRAP1_uc010wnt.1_Missense_Mutation_p.E1263K	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1263	Poly-Glu.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					tcttcctcttcctcctGGATG	0.458													28	65					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56387438	56387438	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56387438G>A	uc002ivx.3	-	21	4652	c.3781C>T	c.(3781-3783)CAG>TAG	p.Q1261*	BZRAP1_uc010dcs.2_Nonsense_Mutation_p.Q1201*|BZRAP1_uc010wnt.1_Nonsense_Mutation_p.Q1261*	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1261						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					tcttcctcctGGATGTCTGAC	0.453													36	59					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56387942	56387942	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56387942G>A	uc002ivx.3	-	20	4501	c.3630C>T	c.(3628-3630)GCC>GCT	p.A1210A	BZRAP1_uc010dcs.2_Silent_p.A1150A|BZRAP1_uc010wnt.1_Silent_p.A1210A	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1210						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCGCCTGCTGGGCCCGTGCTC	0.672													21	55					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56388020	56388020	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56388020G>A	uc002ivx.3	-	20	4423	c.3552C>T	c.(3550-3552)CCC>CCT	p.P1184P	BZRAP1_uc010dcs.2_Silent_p.P1124P|BZRAP1_uc010wnt.1_Silent_p.P1184P	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1184						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGGCCAGTGAGGGAGCTGCGG	0.672													8	24					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56400068	56400068	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56400068G>A	uc002ivx.3	-	9	2135	c.1264C>T	c.(1264-1266)CGC>TGC	p.R422C	BZRAP1_uc010dcs.2_Missense_Mutation_p.R362C|BZRAP1_uc010wnt.1_Missense_Mutation_p.R422C	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	422						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGGCTCTTGCGAAGGGCTGAG	0.657													21	48					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56403666	56403666	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56403666C>T	uc002ivx.3	-	3	1429	c.558G>A	c.(556-558)ACG>ACA	p.T186T	BZRAP1_uc010dcs.2_Silent_p.T186T|BZRAP1_uc010wnt.1_Silent_p.T186T|uc010dct.1_5'Flank|uc010dcu.1_5'Flank	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	186						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCCTCAGGTTCGTTTCCTGCA	0.632													23	51					0	0	1	0	0
MIR142	406934	broad.mit.edu	37	17	56408651	56408651	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56408651C>T	hsa-mir-142|MI0000458	-			c.29C>T			BZRAP1_uc002ivx.3_5'Flank|BZRAP1_uc010dcs.2_5'Flank|BZRAP1_uc010wnt.1_5'Flank|uc010dct.1_Intron|uc010dcu.1_Intron|uc010wnu.1_RNA																	0						GTTAGTAGTGCTTTCTACTTT	0.587													14	56					0	0	1	0	0
HSF5	124535	broad.mit.edu	37	17	56557593	56557593	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56557593G>A	uc002iwi.1	-	2	710	c.586C>T	c.(586-588)CGT>TGT	p.R196C		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	196	By similarity.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTATCTCGACGAAATGACCGG	0.433													35	68					0	0	1	0	0
HSF5	124535	broad.mit.edu	37	17	56565478	56565478	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56565478G>A	uc002iwi.1	-	1	282	c.158C>T	c.(157-159)CCG>CTG	p.P53L		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	53	By similarity.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					cggcccgggcgggcTGAGCAG	0.498													5	12					0	0	1	0	0
TEX14	56155	broad.mit.edu	37	17	56647797	56647797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56647797C>T	uc010dcz.1	-	26	4022	c.3904G>A	c.(3904-3906)GCA>ACA	p.A1302T	TEX14_uc002iwr.1_Missense_Mutation_p.A1296T|TEX14_uc002iws.1_Missense_Mutation_p.A1256T|TEX14_uc010dda.1_Missense_Mutation_p.A1036T	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	1302						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAGTCACATGCCTTAACAAGG	0.423													43	97					0	0	1	0	0
TEX14	56155	broad.mit.edu	37	17	56663166	56663166	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56663166G>A	uc010dcz.1	-	18	3202	c.3084C>T	c.(3082-3084)TTC>TTT	p.F1028F	TEX14_uc002iwr.1_Silent_p.F1022F|TEX14_uc002iws.1_Silent_p.F1022F|TEX14_uc010dda.1_Silent_p.F802F	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	1028						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ACTTACTGGTGAAGCTTCCAA	0.373													36	66					0	0	1	0	0
TEX14	56155	broad.mit.edu	37	17	56663310	56663310	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:56663310C>T	uc010dcz.1	-	18	3058	c.2940G>A	c.(2938-2940)AGG>AGA	p.R980R	TEX14_uc002iwr.1_Silent_p.R974R|TEX14_uc002iws.1_Silent_p.R974R|TEX14_uc010dda.1_Silent_p.R754R	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	980						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TTTCTGGGCTCCTAATGGGGG	0.517													58	121					0	0	1	0	0
PPM1E	22843	broad.mit.edu	37	17	57043060	57043060	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:57043060G>A	uc002iwx.2	+	3	716	c.589G>A	c.(589-591)GAG>AAG	p.E197K	PPM1E_uc010ddd.2_Intron	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	206					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			CACAGAGATTGAGACAGTGAA	0.463													112	300					0	0	1	0	0
PPM1E	22843	broad.mit.edu	37	17	57057430	57057430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:57057430G>A	uc002iwx.2	+	7	1433	c.1306G>A	c.(1306-1308)GGC>AGC	p.G436S	PPM1E_uc010ddd.2_Missense_Mutation_p.G199S	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	445	PP2C-like.				protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			GGCCTGTGATGGCTTCTATGA	0.498													15	30					0	0	1	0	0
TRIM37	4591	broad.mit.edu	37	17	57148260	57148260	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:57148260G>A	uc002iwy.3	-	9	1177	c.733C>T	c.(733-735)CTT>TTT	p.L245F	TRIM37_uc002iwz.3_Missense_Mutation_p.L245F|TRIM37_uc002ixa.3_Missense_Mutation_p.L123F|TRIM37_uc010woc.1_Missense_Mutation_p.L211F	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein	245						perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					AACATCATAAGGATCTCTGAG	0.388									Mulibrey_Nanism				25	70					0	0	1	0	0
PRR11	55771	broad.mit.edu	37	17	57270872	57270872	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:57270872C>T	uc002ixf.1	+	5	501	c.422C>T	c.(421-423)TCC>TTC	p.S141F	PRR11_uc002ixg.1_RNA	NM_018304	NP_060774	Q96HE9	PRR11_HUMAN	proline rich 11	141										ovary(2)	2	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					GAAAGTTCTTCCTGTCCAAGC	0.418													17	87					0	0	1	0	0
C17orf71	55181	broad.mit.edu	37	17	57290234	57290234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:57290234C>T	uc002ixi.2	+	3	2092	c.2050C>T	c.(2050-2052)CCT>TCT	p.P684S		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	684					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					AGAAAAAGAACCTCAAACCCA	0.468													56	186					0	0	1	0	0
DHX40	79665	broad.mit.edu	37	17	57679906	57679906	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:57679906C>T	uc002ixn.1	+	15	1977	c.1830C>T	c.(1828-1830)ACC>ACT	p.T610T	DHX40_uc010woe.1_Silent_p.T533T|DHX40_uc010wof.1_Silent_p.T125T	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	610							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					CAAAAGAGACCTTTGAAGGCC	0.338													21	74					0	0	1	0	0
HEATR6	63897	broad.mit.edu	37	17	58148147	58148147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58148147C>T	uc002iyk.1	-	6	738	c.721G>A	c.(721-723)GGT>AGT	p.G241S	HEATR6_uc010wos.1_Missense_Mutation_p.G73S	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	241							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			GACTGTATACCTTTTAATGCA	0.403													25	65					0	0	1	0	0
LOC653653	653653	broad.mit.edu	37	17	58179669	58179669	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58179669C>T	uc010wot.1	-	1	612	c.496G>A	c.(496-498)GGA>AGA	p.G166R		NM_003916	NP_003907			adaptor-related protein complex 1 sigma 2												0						ACTTCCCCTCCCAAAAGAAAC	0.378													54	140					0	0	1	0	0
CA4	762	broad.mit.edu	37	17	58234891	58234891	+	Silent	SNP	G	A	A	rs145588553	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58234891G>A	uc002iym.3	+	4	466	c.372G>A	c.(370-372)AAG>AAA	p.K124K	CA4_uc010wou.1_Intron	NM_000717	NP_000708	P22748	CAH4_HUMAN	carbonic anhydrase IV precursor	124					bicarbonate transport|one-carbon metabolic process	anchored to external side of plasma membrane|apical plasma membrane|brush border membrane|ER-Golgi intermediate compartment|membrane fraction|perinuclear region of cytoplasm|rough endoplasmic reticulum|secretory granule membrane|trans-Golgi network|transport vesicle membrane	carbonate dehydratase activity|protein binding|zinc ion binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.83e-12)|all cancers(12;6.83e-11)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	TGCCATATAAGGGCTCGGAGC	0.612													42	170					0	0	1	0	0
USP32	84669	broad.mit.edu	37	17	58260778	58260778	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58260778G>A	uc002iyo.1	-	31	4157	c.3871C>T	c.(3871-3873)CGG>TGG	p.R1291W	USP32_uc002iyn.1_Missense_Mutation_p.R961W	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	1291					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			TTTATCCACCGACCATTTACA	0.378													35	80					0	0	1	0	0
USP32	84669	broad.mit.edu	37	17	58275715	58275715	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58275715G>A	uc002iyo.1	-	27	3626	c.3340C>T	c.(3340-3342)CGG>TGG	p.R1114W	USP32_uc002iyn.1_Missense_Mutation_p.R784W	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	1114					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			TCTTTCTTCCGGGTATGCACA	0.478													50	122					0	0	1	0	0
C17orf64	124773	broad.mit.edu	37	17	58506739	58506739	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58506739C>T	uc002iyq.2	+	5	535	c.446C>T	c.(445-447)TCG>TTG	p.S149L		NM_181707	NP_859058	Q86WR6	CQ064_HUMAN	hypothetical protein LOC124773	149										breast(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;5.81e-13)|all cancers(12;2.17e-11)|Colorectal(3;0.01)			TTCTGCGCCTCGGATGCGCCG	0.587													12	42					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	58511106	58511106	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58511106G>A	uc002iyr.1	-	1		c.2252C>T								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		GCATTCCACAGCACCACTGTT	0.383													13	43					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	58512655	58512655	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58512655C>T	uc002iyr.1	-	1		c.703G>A								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		ACCTTCTCTCCCTTCTTTGCA	0.498													14	43					0	0	1	0	0
PPM1D	8493	broad.mit.edu	37	17	58701016	58701016	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58701016C>T	uc002iyt.1	+	2	829	c.607C>T	c.(607-609)CCG>TCG	p.P203S	PPM1D_uc010ddm.1_RNA	NM_003620	NP_003611	O15297	PPM1D_HUMAN	protein phosphatase 1D	203	PP2C-like.				negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			TCAGGATGACCCGAAGGATGA	0.507													49	92					0	0	1	0	0
PPM1D	8493	broad.mit.edu	37	17	58734141	58734141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:58734141C>T	uc002iyt.1	+	5	1421	c.1199C>T	c.(1198-1200)TCC>TTC	p.S400F	PPM1D_uc010ddm.1_RNA	NM_003620	NP_003611	O15297	PPM1D_HUMAN	protein phosphatase 1D	400					negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			GACAGCCCTTCCTATAATAGT	0.393													43	93					0	0	1	0	0
TBX4	9496	broad.mit.edu	37	17	59545008	59545008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:59545008C>T	uc002izi.2	+	4	584	c.539C>T	c.(538-540)CCC>CTC	p.P180L	TBX4_uc010ddo.2_Missense_Mutation_p.P180L|TBX4_uc010woy.1_Missense_Mutation_p.P180L	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	180	T-box.				leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CACCTGGACCCCTTTGGCCAT	0.602													27	73					0	0	1	0	0
TBX4	9496	broad.mit.edu	37	17	59557575	59557575	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:59557575G>A	uc002izi.2	+	7	961	c.916G>A	c.(916-918)GAG>AAG	p.E306K	TBX4_uc010ddo.2_Missense_Mutation_p.E306K|TBX4_uc010woy.1_Missense_Mutation_p.E306K	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	306					leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CTACCAGCACGAGAACGGGGC	0.637													57	98					0	0	1	0	0
NACA2	342538	broad.mit.edu	37	17	59668441	59668441	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:59668441G>A	uc002izj.2	-	1	127	c.101C>T	c.(100-102)TCA>TTA	p.S34L		NM_199290	NP_954984	Q9H009	NACA2_HUMAN	nascent-polypeptide-associated complex alpha	34					protein transport	cytoplasm|nucleus				ovary(1)	1	all_epithelial(1;3.12e-14)					CCCTGGTACTGATTCACCACT	0.542													36	86					0	0	1	0	0
BRIP1	83990	broad.mit.edu	37	17	59853806	59853806	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:59853806G>A	uc002izk.1	-	14	2194	c.2053C>T	c.(2053-2055)CAG>TAG	p.Q685*	BRIP1_uc002izl.1_Nonsense_Mutation_p.Q66*	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	685					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						CTCACAGTCTGGCACACAGAT	0.393			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				67	139					0	0	1	0	0
BRIP1	83990	broad.mit.edu	37	17	59878805	59878805	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:59878805G>A	uc002izk.1	-	8	1090	c.949C>T	c.(949-951)CAT>TAT	p.H317Y		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	317	Helicase ATP-binding.				DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						CTAATTTTATGAACTCCATGA	0.368			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				21	165					0	0	1	0	0
BRIP1	83990	broad.mit.edu	37	17	59937222	59937222	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:59937222G>A	uc002izk.1	-	3	281	c.140C>T	c.(139-141)CCC>CTC	p.P47L		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	47	Helicase ATP-binding.				DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						ACTTCCTGTGGGACTCTCCAA	0.353			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				18	98					0	0	1	0	0
INTS2	57508	broad.mit.edu	37	17	59971154	59971154	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:59971154G>A	uc002izn.2	-	13	1770	c.1694C>T	c.(1693-1695)TCC>TTC	p.S565F	INTS2_uc002izm.2_Missense_Mutation_p.S557F	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	565					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						CTTGGTAAAGGAACGGCTCCT	0.368													6	12					0	0	1	0	0
MED13	9969	broad.mit.edu	37	17	60107264	60107264	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60107264G>A	uc002izo.2	-	7	1197	c.1120C>T	c.(1120-1122)CAT>TAT	p.H374Y	MED13_uc002izp.2_5'UTR	NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	374					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						TCCACCACATGATTTGCTAAT	0.373													20	101					0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342314	60342314	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60342314G>A	uc010woz.1	-	14		c.1815C>T				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						ACGAGGAGGCGAAGCTTGCTT	0.468													42	98					0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60351455	60351455	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60351455C>T	uc002izq.2	-	2	134	c.22G>A	c.(22-24)GGT>AGT	p.G8S	TBC1D3P2_uc010woz.1_RNA					SubName: Full=Putative uncharacterized protein TBC1D3E;												0						CACCAACTACCCGCGACCTCT	0.542													119	474					0	0	1	0	0
EFCAB3	146779	broad.mit.edu	37	17	60493656	60493656	+	Missense_Mutation	SNP	G	A	A	rs140338043	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60493656G>A	uc002izu.1	+	10	1361	c.1283G>A	c.(1282-1284)AGA>AAA	p.R428K	EFCAB3_uc010wpc.1_Missense_Mutation_p.R480K	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	428							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			GGAAGAAAAAGAAAACGGAAA	0.333													33	104					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60741964	60741965	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60741964_60741965GG>AA	uc002jad.2	+	2	576_577	c.174_175GG>AA	c.(172-177)CAGGGC>CAAAGC	p.G59S	MRC2_uc002jac.2_Missense_Mutation_p.G59S	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	59	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TGGAGGCCCAGGGCGGGCAGGT	0.619													35	93					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60749489	60749489	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60749489G>A	uc002jad.2	+	8	1839	c.1437G>A	c.(1435-1437)GAG>GAA	p.E479E	MRC2_uc002jac.2_Silent_p.E479E	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	479	Extracellular (Potential).|C-type lectin 2.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						ACAGTCTGGAGGACTGTGTCA	0.562													40	101					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60753853	60753853	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60753853G>A	uc002jad.2	+	11	2197	c.1795G>A	c.(1795-1797)GAT>AAT	p.D599N	MRC2_uc002jac.2_Missense_Mutation_p.D599N|MRC2_uc010ddq.1_RNA	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	599	Extracellular (Potential).|C-type lectin 3.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTCAGTGGGGATGAAGTCAT	0.617													43	97					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60754776	60754776	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60754776C>T	uc002jad.2	+	12	2383	c.1981C>T	c.(1981-1983)CCC>TCC	p.P661S	MRC2_uc010ddq.1_RNA	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	661	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GGGGCCAGATCCCACGCCCAG	0.672													7	18					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60757792	60757792	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60757792G>A	uc002jad.2	+	16	2853	c.2451G>A	c.(2449-2451)CGG>CGA	p.R817R	MRC2_uc002jae.2_5'Flank|MRC2_uc002jaf.2_5'Flank	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	817	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CGGACGTGCGGGAGCCCGACG	0.652													46	134					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60758262	60758262	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60758262G>A	uc002jad.2	+	17	2977	c.2575G>A	c.(2575-2577)GAG>AAG	p.E859K	MRC2_uc002jae.2_5'UTR|MRC2_uc002jaf.2_5'Flank	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	859	Extracellular (Potential).|C-type lectin 5.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GTTCCAGGCCGAGCTGACCTC	0.642													12	28					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60768077	60768077	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60768077G>A	uc002jad.2	+	27	4369	c.3967G>A	c.(3967-3969)GGC>AGC	p.G1323S	MRC2_uc002jae.2_Missense_Mutation_p.G394S|MRC2_uc002jaf.2_Missense_Mutation_p.G189S	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	1323	Extracellular (Potential).|C-type lectin 8.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GAGCTATGAGGGCCAGAGTCG	0.612													18	48					0	0	1	0	0
MARCH10	162333	broad.mit.edu	37	17	60814171	60814171	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60814171G>A	uc010ddr.2	-	6	1296	c.1058C>T	c.(1057-1059)TCA>TTA	p.S353L	MARCH10_uc002jag.3_Missense_Mutation_p.S353L|MARCH10_uc010dds.2_Missense_Mutation_p.S391L|MARCH10_uc002jah.2_Missense_Mutation_p.S352L|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	353							ligase activity|zinc ion binding				0						TATTCTCAATGAGCCATGACT	0.493													50	108					0	0	1	0	0
MARCH10	162333	broad.mit.edu	37	17	60814282	60814282	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60814282C>T	uc010ddr.2	-	6	1185	c.947G>A	c.(946-948)AGA>AAA	p.R316K	MARCH10_uc002jag.3_Missense_Mutation_p.R316K|MARCH10_uc010dds.2_Missense_Mutation_p.R354K|MARCH10_uc002jah.2_Missense_Mutation_p.R315K|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	316							ligase activity|zinc ion binding				0						AAATCTACTTCTTTTGTGATG	0.453													114	311					0	0	1	0	0
MARCH10	162333	broad.mit.edu	37	17	60814350	60814350	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60814350C>T	uc010ddr.2	-	6	1117	c.879G>A	c.(877-879)GAG>GAA	p.E293E	MARCH10_uc002jag.3_Silent_p.E293E|MARCH10_uc010dds.2_Silent_p.E331E|MARCH10_uc002jah.2_Silent_p.E292E|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	293							ligase activity|zinc ion binding				0						ACTGGGTTTCCTCTTCAGTGT	0.478													37	431					0	0	1	0	0
MARCH10	162333	broad.mit.edu	37	17	60814507	60814507	+	Missense_Mutation	SNP	C	T	T	rs17853369		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:60814507C>T	uc010ddr.2	-	6	960	c.722G>A	c.(721-723)GGA>GAA	p.G241E	MARCH10_uc002jag.3_Missense_Mutation_p.G241E|MARCH10_uc010dds.2_Missense_Mutation_p.G279E|MARCH10_uc002jah.2_Missense_Mutation_p.G240E|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	241							ligase activity|zinc ion binding				0						ACTATTTTTTCCTTGGAAGGC	0.532													48	127					0	0	1	0	0
TANC2	26115	broad.mit.edu	37	17	61391751	61391751	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61391751C>T	uc002jal.3	+	8	963	c.940C>T	c.(940-942)CGC>TGC	p.R314C	TANC2_uc010wpe.1_Missense_Mutation_p.R224C	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	314							binding			ovary(2)	2						CCTTTCAGTTCGCTTTGCACC	0.438													24	40					0	0	1	0	0
TANC2	26115	broad.mit.edu	37	17	61498026	61498026	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61498026C>T	uc002jal.3	+	25	4706	c.4683C>T	c.(4681-4683)CCC>CCT	p.P1561P	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Silent_p.P672P	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1561							binding			ovary(2)	2						CTGGTTCACCCGTGCGCTATC	0.582													10	29					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61555329	61555329	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61555329C>T	uc002jau.1	+	2	309	c.287C>T	c.(286-288)GCC>GTC	p.A96V	ACE_uc010wph.1_Missense_Mutation_p.A96V|ACE_uc010wpi.1_Missense_Mutation_p.A96V|ACE_uc010ddu.1_5'UTR	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	96	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TTTGCGGAGGCCTGGGGCCAG	0.622													11	18					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61557763	61557763	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61557763G>A	uc002jau.1	+	5	743	c.721G>A	c.(721-723)GAA>AAA	p.E241K	ACE_uc010wpi.1_Missense_Mutation_p.E241K|ACE_uc010ddu.1_Missense_Mutation_p.E58K	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	241	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GGACGATCTGGAACACCTCTA	0.612													28	75					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61557841	61557841	+	Missense_Mutation	SNP	G	A	A	rs149412997	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61557841G>A	uc002jau.1	+	5	821	c.799G>A	c.(799-801)GGA>AGA	p.G267R	ACE_uc010wpi.1_Missense_Mutation_p.G267R|ACE_uc010ddu.1_Missense_Mutation_p.G84R	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	267	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TCGCCGATACGGAGACAGATA	0.607													34	87					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61559014	61559014	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61559014G>A	uc002jau.1	+	7	1055	c.1033G>A	c.(1033-1035)GGG>AGG	p.G345R	ACE_uc010wpi.1_Missense_Mutation_p.G345R|ACE_uc010ddu.1_Missense_Mutation_p.G162R	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	345	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GTTCTGGGAAGGGTCGATGCT	0.622													34	50					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61568368	61568368	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61568368C>T	uc002jau.1	+	18	2717	c.2695C>T	c.(2695-2697)CCT>TCT	p.P899S	ACE_uc002jav.1_Missense_Mutation_p.P325S|ACE_uc010ddv.1_Missense_Mutation_p.P126S|ACE_uc010wpj.1_Missense_Mutation_p.P325S|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.P145S	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	899	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GGTGCCCTTCCCTTCAGCCCC	0.617													42	127					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61568741	61568741	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61568741C>T	uc002jau.1	+	19	2933	c.2911C>T	c.(2911-2913)CGG>TGG	p.R971W	ACE_uc002jav.1_Missense_Mutation_p.R397W|ACE_uc010ddv.1_Missense_Mutation_p.R198W|ACE_uc010wpj.1_Missense_Mutation_p.R397W|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.R217W	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	971	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CAAGGACTTCCGGTACATCCA	0.607													36	57					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61570930	61570930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61570930G>A	uc002jau.1	+	20	3068	c.3046G>A	c.(3046-3048)GAG>AAG	p.E1016K	ACE_uc002jav.1_Missense_Mutation_p.E442K|ACE_uc010ddv.1_Missense_Mutation_p.E243K|ACE_uc010wpj.1_Missense_Mutation_p.E442K|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.E262K	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1016	Extracellular (Potential).|Peptidase M2 2.	Zinc 2; catalytic.			arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CGGCTTCCATGAGGCCATTGG	0.592													10	74					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61611571	61611571	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61611571C>T	uc002jay.2	+	5	1080	c.1000C>T	c.(1000-1002)CCC>TCC	p.P334S	KCNH6_uc002jax.1_Missense_Mutation_p.P334S|KCNH6_uc010wpl.1_Missense_Mutation_p.P211S|KCNH6_uc010wpm.1_Missense_Mutation_p.P334S|KCNH6_uc002jaz.1_Missense_Mutation_p.P334S	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	334	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	GGTCAGCCACCCCCGCCGCAT	0.567													32	56					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61621019	61621019	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61621019C>T	uc002jay.2	+	10	2311	c.2231C>T	c.(2230-2232)TCA>TTA	p.S744L	KCNH6_uc010wpl.1_Missense_Mutation_p.S621L|KCNH6_uc010wpm.1_Missense_Mutation_p.S744L|KCNH6_uc002jaz.1_Missense_Mutation_p.S691L	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	744	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	GACAACCAGTCAGGTGAGCAA	0.647													28	62					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61623180	61623180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61623180G>A	uc002jay.2	+	14	2982	c.2902G>A	c.(2902-2904)GAA>AAA	p.E968K	KCNH6_uc010wpl.1_Missense_Mutation_p.E809K|KCNH6_uc010wpm.1_Missense_Mutation_p.E932K|KCNH6_uc002jaz.1_Missense_Mutation_p.E879K	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	968	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	CTCCCTCCCTGAACACCTTGG	0.562													32	77					0	0	1	0	0
DCAF7	10238	broad.mit.edu	37	17	61660954	61660954	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61660954C>T	uc002jbc.2	+	6	836	c.619C>T	c.(619-621)CGC>TGC	p.R207C	DCAF7_uc002jbb.2_RNA|DCAF7_uc010wpn.1_Intron	NM_005828	NP_005819	P61962	DCAF7_HUMAN	WD-repeat protein	207	WD 3.				multicellular organismal development	CUL4 RING ubiquitin ligase complex|cytoplasm|nucleus	protein binding			ovary(1)	1						GTTTGACCTCCGCCATCTAGA	0.562													19	36					0	0	1	0	0
MAP3K3	4215	broad.mit.edu	37	17	61735251	61735251	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61735251C>T	uc002jbg.2	+	5	684	c.365C>T	c.(364-366)TCC>TTC	p.S122F	MAP3K3_uc002jbe.2_Missense_Mutation_p.S153F|MAP3K3_uc002jbf.2_Missense_Mutation_p.S153F|MAP3K3_uc002jbh.2_Missense_Mutation_p.S153F|MAP3K3_uc010wpo.1_Missense_Mutation_p.S37F|MAP3K3_uc010wpp.1_Missense_Mutation_p.S122F	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	122	OPR.				MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						TTGCTGTTGTCCCAGGACAGA	0.438													20	61					0	0	1	0	0
DDX42	11325	broad.mit.edu	37	17	61877952	61877952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61877952C>T	uc002jbu.2	+	7	853	c.596C>T	c.(595-597)CCT>CTT	p.P199L	DDX42_uc002jbv.2_Missense_Mutation_p.P199L|DDX42_uc002jbw.1_5'UTR	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	199					protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						ATCATTGATCCTCTTCCCCCC	0.388													58	119					0	0	1	0	0
DDX42	11325	broad.mit.edu	37	17	61886222	61886222	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61886222C>T	uc002jbu.2	+	11	1323	c.1066C>T	c.(1066-1068)CGA>TGA	p.R356*	DDX42_uc002jbv.2_Nonsense_Mutation_p.R356*|DDX42_uc002jbw.1_Nonsense_Mutation_p.R92*|DDX42_uc002jbx.2_Nonsense_Mutation_p.R92*|DDX42_uc002jby.2_5'Flank	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	356	Helicase ATP-binding.				protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						ATATAATCTTCGATCAGTGGC	0.443													29	119					0	0	1	0	0
CSH2	1443	broad.mit.edu	37	17	61949961	61949961	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61949961C>T	uc002jch.2	-	4	547	c.432G>A	c.(430-432)GAG>GAA	p.E144E	CSH2_uc002jcg.2_Intron|CSH2_uc002jci.2_Silent_p.E144E|GH2_uc002jcj.2_Intron|CSH2_uc002jck.2_Silent_p.E144E	NM_020991	NP_066271	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 2 isoform 1	144					female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding				0						GGATGCCTTCCTCTAGGTCCT	0.602													28	101					0	0	1	0	0
CSH2	1443	broad.mit.edu	37	17	61949998	61949998	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61949998G>A	uc002jch.2	-	4	510	c.395C>T	c.(394-396)TCG>TTG	p.S132L	CSH2_uc002jcg.2_Intron|CSH2_uc002jci.2_Missense_Mutation_p.S132L|GH2_uc002jcj.2_Intron|CSH2_uc002jck.2_Missense_Mutation_p.S132L	NM_020991	NP_066271	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 2 isoform 1	132					female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding				0						ATCGCTGTCCGAGGTGTCATA	0.597													29	64					0	0	1	0	0
GH2	2689	broad.mit.edu	37	17	61958450	61958450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61958450G>A	uc002jco.1	-	3	292	c.230C>T	c.(229-231)TCC>TTC	p.S77F	GH2_uc002jcj.2_Missense_Mutation_p.S77F|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Missense_Mutation_p.S77F|GH2_uc002jcm.1_Missense_Mutation_p.S77F|GH2_uc002jcn.1_Missense_Mutation_p.S62F	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	77						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						GAAGCAGAGGGAGGTCTGGGG	0.532													108	285					0	0	1	0	0
CSH1	1442	broad.mit.edu	37	17	61972439	61972439	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61972439G>A	uc002jcs.1	-	5	713	c.597C>T	c.(595-597)GTC>GTT	p.V199V	CSH2_uc002jck.2_Intron|CSH1_uc002jcp.1_3'UTR|CSH1_uc002jcq.1_Silent_p.V160V|CSH1_uc002jcr.1_3'UTR|CSH1_uc002jct.1_Silent_p.V165V|CSH1_uc002jcu.1_3'UTR|CSH1_uc002jcv.1_Silent_p.V104V|CSH1_uc002jcw.2_3'UTR	NM_001317	NP_001308	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 1 isoform 1	199					female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding			skin(1)	1						GGAATGTCTCGACCTTGTCCA	0.572									Russell-Silver_syndrome				16	164					0	0	1	0	0
CSHL1	1444	broad.mit.edu	37	17	61987554	61987555	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61987554_61987555CC>TT	uc002jda.1	-	4	500_501	c.438_439GG>AA	c.(436-441)AAGGAC>AAAAAC	p.D147N	CSHL1_uc002jcz.1_Missense_Mutation_p.D124N|CSHL1_uc002jdb.1_Missense_Mutation_p.D53N|CSHL1_uc002jdc.1_Missense_Mutation_p.D64N|CSHL1_uc002jdd.1_Missense_Mutation_p.D85N|CSHL1_uc002jde.2_3'UTR|CSHL1_uc002jdf.2_Missense_Mutation_p.D64N|CSHL1_uc002jdg.2_3'UTR|CSHL1_uc002jdh.2_Missense_Mutation_p.D53N	NM_022579	NP_072101	Q14406	CSHL_HUMAN	chorionic somatomammotropin hormone-like 1	147						extracellular region	hormone activity|metal ion binding				0						TCCTCTAGGTCCTTTAGGAGGT	0.589													7	79					0	0	1	0	0
CSHL1	1444	broad.mit.edu	37	17	61987664	61987664	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61987664G>A	uc002jda.1	-	4	391	c.329C>T	c.(328-330)TCC>TTC	p.S110F	CSHL1_uc002jcz.1_Missense_Mutation_p.S87F|CSHL1_uc002jdb.1_Missense_Mutation_p.S16F|CSHL1_uc002jdc.1_Missense_Mutation_p.S27F|CSHL1_uc002jdd.1_Missense_Mutation_p.S48F|CSHL1_uc002jde.2_3'UTR|CSHL1_uc002jdf.2_Missense_Mutation_p.S27F|CSHL1_uc002jdg.2_3'UTR|CSHL1_uc002jdh.2_Missense_Mutation_p.S16F	NM_022579	NP_072101	Q14406	CSHL_HUMAN	chorionic somatomammotropin hormone-like 1	110						extracellular region	hormone activity|metal ion binding				0						GAGCAGCAGGGAGATGTGGAG	0.627													17	38					0	0	1	0	0
GH1	2688	broad.mit.edu	37	17	61994690	61994690	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:61994690C>T	uc002jdj.2	-	5	695	c.633G>A	c.(631-633)GTG>GTA	p.V211V	GH1_uc002jdi.2_Silent_p.V196V|GH1_uc002jdk.2_Silent_p.V171V|GH1_uc002jdl.2_Silent_p.V116V|GH1_uc002jdm.2_3'UTR|GH1_uc002jdn.2_Nonsense_Mutation_p.W165*	NM_000515	NP_000506	P01241	SOMA_HUMAN	growth hormone 1 isoform 1	211					glucose transport|growth hormone receptor signaling pathway|JAK-STAT cascade|positive regulation of activation of JAK2 kinase activity|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of MAP kinase activity|positive regulation of multicellular organism growth|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|response to estradiol stimulus	extracellular space	growth factor activity|growth hormone receptor binding|hormone activity|metal ion binding|prolactin receptor binding				0						AGCTGCCCTCCACAGAGCGGC	0.617													20	41					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62018170	62018171	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62018170_62018171CC>TT	uc002jds.1	-	24	5548_5549	c.5471_5472GG>AA	c.(5470-5472)GGG>GAA	p.G1824E		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1824					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GCACAGTCTGCCCTGGGGGAGG	0.683													6	64					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62018542	62018542	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62018542G>A	uc002jds.1	-	24	5177	c.5100C>T	c.(5098-5100)ACC>ACT	p.T1700T		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1700					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TCTCCTCCATGGTCTGCTTGA	0.587													22	66					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62018713	62018713	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62018713G>A	uc002jds.1	-	24	5006	c.4929C>T	c.(4927-4929)TTC>TTT	p.F1643F		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1643					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GGGTGTCCACGAAGTCTGAGA	0.567													19	62					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62018929	62018929	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62018929G>A	uc002jds.1	-	24	4790	c.4713C>T	c.(4711-4713)CCC>CCT	p.P1571P		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1571	IV.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TGCCGATGGAGGGGTTGCCGC	0.577													5	51					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62019102	62019102	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62019102C>T	uc002jds.1	-	24	4617	c.4540G>A	c.(4540-4542)GAT>AAT	p.D1514N		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1514	IV.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	AACATATCATCGATGCCCGAC	0.547													24	73					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62020413	62020413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62020413G>A	uc002jds.1	-	23	4138	c.4061C>T	c.(4060-4062)GCC>GTC	p.A1354V		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1354	Helical; Name=S1 of repeat IV; (Potential).|IV.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GATGTCGAAGGCCTGCTTCGT	0.557													45	78					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62026817	62026817	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62026817C>T	uc002jds.1	-	15	3002	c.2925G>A	c.(2923-2925)GAG>GAA	p.E975E		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	975					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CCTCAGGGTCCTCCTCGGGGG	0.642													8	9					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62026827	62026827	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62026827G>A	uc002jds.1	-	15	2992	c.2915C>T	c.(2914-2916)CCC>CTC	p.P972L		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	972					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CTCCTCGGGGGGCTTGTAGTC	0.642													4	17					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62036634	62036634	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62036634G>A	uc002jds.1	-	12	2087	c.2010C>T	c.(2008-2010)TCC>TCT	p.S670S		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	670	Helical; Voltage-sensor; Name=S4 of repeat II; (Potential).|II.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CCAGACGGAAGGAGCGTAGCA	0.597													17	49					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62041900	62041900	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62041900C>T	uc002jds.1	-	9	1457	c.1380G>A	c.(1378-1380)GAG>GAA	p.E460E		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	460					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TCTCCTTATCCTCGGCCAGGG	0.532													13	41					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62045598	62045598	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62045598C>T	uc002jds.1	-	6	898	c.821G>A	c.(820-822)GGA>GAA	p.G274E		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	274	I.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CCTCAGGTTTCCCATGAAGAG	0.562													31	84					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62049186	62049186	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62049186G>A	uc002jds.1	-	4	584	c.507C>T	c.(505-507)ACC>ACT	p.T169T		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	169	Helical; Name=S2 of repeat I; (Potential).|I.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GGGACTCAAAGGTGTAGATCC	0.592													8	23					0	0	1	0	0
ICAM2	3384	broad.mit.edu	37	17	62082713	62082713	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62082713C>T	uc002jdu.3	-	2	314	c.82G>A	c.(82-84)GAG>AAG	p.E28K	ICAM2_uc002jdw.3_Missense_Mutation_p.E28K|ICAM2_uc010ded.2_Missense_Mutation_p.E28K|ICAM2_uc002jdx.3_Missense_Mutation_p.E28K|ICAM2_uc002jdv.3_Missense_Mutation_p.E28K|ICAM2_uc010wpx.1_Missense_Mutation_p.E28K	NM_000873	NP_000864	P13598	ICAM2_HUMAN	intercellular adhesion molecule 2 precursor	28	Extracellular (Potential).				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			ovary(1)	1						ACGTGTACCTCGAATACCTTC	0.582													6	47					0	0	1	0	0
ERN1	2081	broad.mit.edu	37	17	62125259	62125259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62125259G>A	uc002jdz.2	-	19	2601	c.2488C>T	c.(2488-2490)CCG>TCG	p.P830S		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	830	Cytoplasmic (Potential).|Protein kinase.		P -> L (in an ovarian serous carcinoma sample; somatic mutation).		activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity	p.P830L(1)		central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						CAGAAGAACGGGTGTTTGAGC	0.428													17	50					0	0	1	0	0
ERN1	2081	broad.mit.edu	37	17	62144067	62144067	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62144067G>A	uc002jdz.2	-	8	919	c.806C>T	c.(805-807)CCG>CTG	p.P269L		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	269	Lumenal (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						CTTGGGGAACGGGTACTTCCA	0.592													16	29					0	0	1	0	0
TEX2	55852	broad.mit.edu	37	17	62291316	62291316	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62291316G>A	uc002jec.2	-	2	435	c.262C>T	c.(262-264)CCT>TCT	p.P88S	TEX2_uc002jed.2_Missense_Mutation_p.P88S|TEX2_uc002jee.2_Missense_Mutation_p.P88S	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	88					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		GAGGCAGCAGGGCCGGCGGGG	0.582													82	209					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	62399301	62399301	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62399301C>T	uc002jef.1	-	1	139	c.130G>A	c.(130-132)GAC>AAC	p.D44N						Homo sapiens cDNA FLJ34100 fis, clone FCBBF3007597.																		ACATGAAGGTCGTTAGAGGTC	0.507													4	22					0	0	1	0	0
POLG2	11232	broad.mit.edu	37	17	62487002	62487002	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62487002G>A	uc002jei.2	-	4	963	c.880C>T	c.(880-882)CCC>TCC	p.P294S	POLG2_uc010deg.1_Missense_Mutation_p.P294S	NM_007215	NP_009146	Q9UHN1	DPOG2_HUMAN	DNA polymerase subunit gamma-2, mitochondrial	294					DNA repair|DNA-dependent DNA replication|glycyl-tRNA aminoacylation	mitochondrial chromosome	ATP binding|DNA-directed DNA polymerase activity|glycine-tRNA ligase activity|identical protein binding|single-stranded DNA binding			central_nervous_system(1)	1	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;4.97e-11)			TTTCCCCAGGGAAAATTGTAG	0.398													40	71					0	0	1	0	0
DDX5	1655	broad.mit.edu	37	17	62496099	62496099	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62496099G>A	uc002jek.2	-	13	2034	c.1787C>T	c.(1786-1788)CCT>CTT	p.P596L	POLG2_uc002jei.2_5'Flank|POLG2_uc010deg.1_5'Flank|DDX5_uc010deh.2_Missense_Mutation_p.P596L|DDX5_uc002jej.2_Missense_Mutation_p.P491L|DDX5_uc010wqa.1_Missense_Mutation_p.P517L	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	596					cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			TGCAGTAGCAGGATATGCATA	0.388			T	ETV4	prostate								8	66					0	0	1	0	0
PLEKHM1P	440456	broad.mit.edu	37	17	62782792	62782792	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62782792G>A	uc002jew.3	-	10	2288	c.1377C>T	c.(1375-1377)GCC>GCT	p.A459A	PLEKHM1P_uc002jev.3_RNA	NR_024386				RecName: Full=Putative pleckstrin homology domain-containing family M member 1P;												0						CATGCTGGGAGGCAAATTCAA	0.542													5	20					0	0	1	0	0
PLEKHM1P	440456	broad.mit.edu	37	17	62796745	62796745	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62796745G>A	uc002jew.3	-	6	1206	c.295C>T	c.(295-297)CTG>TTG	p.L99L	PLEKHM1P_uc002jev.3_RNA|PLEKHM1P_uc010wqe.1_Silent_p.L99L	NR_024386				RecName: Full=Putative pleckstrin homology domain-containing family M member 1P;												0						ACCTTCTGCAGGGCCTCCCGC	0.667													10	43					0	0	1	0	0
PLEKHM1P	440456	broad.mit.edu	37	17	62796874	62796874	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62796874G>A	uc002jew.3	-	6	1077	c.166C>T	c.(166-168)CGC>TGC	p.R56C	PLEKHM1P_uc002jev.3_RNA|PLEKHM1P_uc010wqe.1_Missense_Mutation_p.R56C	NR_024386				RecName: Full=Putative pleckstrin homology domain-containing family M member 1P;												0						GACTCACAGCGAAGCAGGGAG	0.627													10	25					0	0	1	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62855787	62855787	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62855787G>A	uc002jey.2	-	11	5008	c.4477C>T	c.(4477-4479)CTC>TTC	p.L1493F	LRRC37A3_uc010wqg.1_Missense_Mutation_p.L611F|LRRC37A3_uc002jex.1_Missense_Mutation_p.L470F|LRRC37A3_uc010wqf.1_Missense_Mutation_p.L531F|LRRC37A3_uc010dek.1_Missense_Mutation_p.L499F	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1493	Extracellular (Potential).					integral to membrane					0						TGAGCAATGAGCCTTCTCACA	0.517													103	366					0	0	1	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62855838	62855838	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62855838G>A	uc002jey.2	-	11	4957	c.4426C>T	c.(4426-4428)CAG>TAG	p.Q1476*	LRRC37A3_uc010wqg.1_Nonsense_Mutation_p.Q594*|LRRC37A3_uc002jex.1_Nonsense_Mutation_p.Q453*|LRRC37A3_uc010wqf.1_Nonsense_Mutation_p.Q514*|LRRC37A3_uc010dek.1_Nonsense_Mutation_p.Q482*	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1476	Extracellular (Potential).					integral to membrane					0						TGGGTTAGCTGAATTTCAAAC	0.512													119	328					0	0	1	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62859106	62859106	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:62859106G>A	uc002jey.2	-	10	3615	c.3084C>T	c.(3082-3084)CTC>CTT	p.L1028L	LRRC37A3_uc010wqg.1_Silent_p.L146L|LRRC37A3_uc002jex.1_Silent_p.L5L|LRRC37A3_uc010wqf.1_Silent_p.L66L|LRRC37A3_uc010dek.1_Silent_p.L34L	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1028	Extracellular (Potential).					integral to membrane					0						TAAATTGGCAGAGGCAGCAGG	0.453													96	217					0	0	1	0	0
RGS9	8787	broad.mit.edu	37	17	63173904	63173904	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:63173904G>A	uc002jfe.2	+	9	747	c.637G>A	c.(637-639)GAA>AAA	p.E213K	RGS9_uc010dem.2_Missense_Mutation_p.E213K|RGS9_uc002jfd.2_Missense_Mutation_p.E213K|RGS9_uc002jff.2_RNA	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	213					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						CAATCCGAATGAAGTCAAGGT	0.493													30	67					0	0	1	0	0
RGS9	8787	broad.mit.edu	37	17	63221455	63221455	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:63221455C>T	uc002jfe.2	+	18	1853	c.1743C>T	c.(1741-1743)TCC>TCT	p.S581S	RGS9_uc010dem.2_Silent_p.S578S|RGS9_uc002jfd.2_Silent_p.S578S|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Silent_p.S352S	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	581					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						TGGCTCTGTCCTTCAGCAGGT	0.682													34	156					0	0	1	0	0
CCDC46	201134	broad.mit.edu	37	17	63847976	63847976	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:63847976C>T	uc002jfl.2	-	21	2559	c.2340G>A	c.(2338-2340)ATG>ATA	p.M780I	CCDC46_uc010deo.2_Missense_Mutation_p.M522I|CCDC46_uc002jfm.2_Missense_Mutation_p.M780I|CCDC46_uc010dep.2_Missense_Mutation_p.M738I	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	780	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			GCTCTATTTTCATCTTTTCTG	0.388													73	167					0	0	1	0	0
APOH	350	broad.mit.edu	37	17	64212957	64212957	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:64212957C>T	uc002jfn.3	-	6	792	c.733G>A	c.(733-735)GAA>AAA	p.E245K		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	245	Sushi 4.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			CATTCTATTTCTTCCGGGCCA	0.418													49	111					0	0	1	0	0
APOH	350	broad.mit.edu	37	17	64216856	64216856	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:64216856G>A	uc002jfn.3	-	5	479	c.420C>T	c.(418-420)ATC>ATT	p.I140I		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	140	Sushi 3.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			GAGGGCAGATGATGGCTGGGA	0.368													30	72					0	0	1	0	0
APOH	350	broad.mit.edu	37	17	64222206	64222206	+	Missense_Mutation	SNP	C	T	T	rs138448367	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:64222206C>T	uc002jfn.3	-	3	337	c.278G>A	c.(277-279)GGA>GAA	p.G93E		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	93	Sushi 2.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			GCGTACGGCTCCATTTTCTAA	0.358													17	58					0	0	1	0	0
PRKCA	5578	broad.mit.edu	37	17	64738836	64738836	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:64738836G>A	uc002jfp.1	+	13	1526	c.1482G>A	c.(1480-1482)ACG>ACA	p.T494T	PRKCA_uc002jfo.1_Silent_p.T365T	NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	494	Protein kinase.				activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	ATGGAGTCACGACCAGGACCT	0.483													36	79					0	0	1	0	0
CACNG5	27091	broad.mit.edu	37	17	64873464	64873464	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:64873464G>A	uc010wqi.1	+	2	251	c.14G>A	c.(13-15)GGG>GAG	p.G5E	CACNG5_uc002jfr.2_Missense_Mutation_p.G5E|CACNG5_uc010wqj.1_Missense_Mutation_p.G5E	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	5					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			AGTGCCTGCGGGAGGAAGGCC	0.632													17	67					0	0	1	0	0
CACNG5	27091	broad.mit.edu	37	17	64873549	64873549	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:64873549G>A	uc010wqi.1	+	2	336	c.99G>A	c.(97-99)TGG>TGA	p.W33*	CACNG5_uc002jfr.2_Nonsense_Mutation_p.W33*|CACNG5_uc010wqj.1_Nonsense_Mutation_p.W33*	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	33					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			CCGACTACTGGCTGTACCTGG	0.607													17	72					0	0	1	0	0
CACNG5	27091	broad.mit.edu	37	17	64873562	64873562	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:64873562G>A	uc010wqi.1	+	2	349	c.112G>A	c.(112-114)GAG>AAG	p.E38K	CACNG5_uc002jfr.2_Missense_Mutation_p.E38K|CACNG5_uc010wqj.1_Missense_Mutation_p.E38K	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	38					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			GTACCTGGAGGAGGGTGTGAT	0.622													22	73					0	0	1	0	0
CACNG4	27092	broad.mit.edu	37	17	65026653	65026653	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:65026653G>A	uc002jft.1	+	4	532	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_014405	NP_055220	Q9UBN1	CCG4_HUMAN	voltage-dependent calcium channel gamma-4	173	Extracellular (Potential).				membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane	voltage-gated calcium channel activity			central_nervous_system(1)	1	all_cancers(12;9.86e-11)		BRCA - Breast invasive adenocarcinoma(6;1.35e-07)			CAAGCGGGACGAAGACAAAAA	0.512													43	110					0	0	1	0	0
CACNG1	786	broad.mit.edu	37	17	65040977	65040977	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:65040977G>A	uc002jfu.2	+	1	272	c.201G>A	c.(199-201)AAG>AAA	p.K67K		NM_000727	NP_000718	Q06432	CCG1_HUMAN	voltage-dependent calcium channel gamma-1	67					muscle contraction	voltage-gated calcium channel complex	voltage-gated calcium channel activity				0	all_cancers(12;1.04e-10)|Breast(2;1.45e-16)|all_epithelial(3;4.81e-12)				Amlodipine(DB00381)|Diltiazem(DB00343)|Ibutilide(DB00308)|Lercanidipine(DB00528)|Magnesium Sulfate(DB00653)|Nimodipine(DB00393)|Nitrendipine(DB01054)|Verapamil(DB00661)	ACGACAGCAAGACCTGCGGGC	0.652													10	26					0	0	1	0	0
HELZ	9931	broad.mit.edu	37	17	65083039	65083039	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:65083039G>A	uc010wqk.1	-	32	5590	c.5403C>T	c.(5401-5403)TCC>TCT	p.S1801S	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Silent_p.S1800S	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					AGGACTCCGGGGATGAAAAGT	0.468													52	112					0	0	1	0	0
HELZ	9931	broad.mit.edu	37	17	65185747	65185747	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:65185747G>A	uc010wqk.1	-	11	1009	c.822C>T	c.(820-822)ACC>ACT	p.T274T	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Silent_p.T274T	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					GGGATTTTTTGGTGCTGACAG	0.353													46	126					0	0	1	0	0
BPTF	2186	broad.mit.edu	37	17	65909275	65909276	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:65909275_65909276CC>TT	uc002jgf.2	+	11	5336_5337	c.5275_5276CC>TT	c.(5275-5277)CCT>TTT	p.P1759F	BPTF_uc002jge.2_Missense_Mutation_p.P1885F	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1885					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			ATATCCTTCTCCTAGACCGACC	0.371													54	170					0	0	1	0	0
AMZ2	51321	broad.mit.edu	37	17	66251903	66251903	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:66251903C>T	uc002jgs.1	+	7	930	c.813C>T	c.(811-813)CTC>CTT	p.L271L	AMZ2_uc002jgr.1_Silent_p.L271L|AMZ2_uc002jgt.1_Silent_p.L271L|AMZ2_uc002jgu.1_Silent_p.L271L|AMZ2_uc002jgv.1_Silent_p.L271L|AMZ2_uc002jgw.1_Silent_p.L213L|AMZ2_uc002jgy.1_Silent_p.L271L	NM_001033572	NP_001028744	Q86W34	AMZ2_HUMAN	archaemetzincins-2 isoform 1	271							metallopeptidase activity|zinc ion binding				0	all_cancers(12;1.12e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)			TTGCATGCCTCATGCAAGGCT	0.498													42	84					0	0	1	0	0
ARSG	22901	broad.mit.edu	37	17	66339821	66339821	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:66339821C>T	uc002jhc.2	+	3	1091	c.295C>T	c.(295-297)CGC>TGC	p.R99C	ARSG_uc002jhb.1_5'UTR	NM_014960	NP_055775	Q96EG1	ARSG_HUMAN	Arylsulfatase G precursor	99					sulfur compound metabolic process	endoplasmic reticulum|extracellular space|lysosome	arylsulfatase activity|metal ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;5.34e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			GCTTGGCCTTCGCAATGGAGT	0.607													17	53					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66873806	66873806	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:66873806C>T	uc002jhp.2	-	31	4112	c.3933G>A	c.(3931-3933)GGG>GGA	p.G1311G	ABCA8_uc002jhq.2_Silent_p.G1351G|ABCA8_uc010wqq.1_Silent_p.G1346G	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1311	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					CTCCACCGCTCCCTTTCAGTA	0.557													31	90					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66879961	66879961	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:66879961C>T	uc002jhp.2	-	27	3737	c.3558G>A	c.(3556-3558)AAG>AAA	p.K1186K	ABCA8_uc002jhq.2_Silent_p.K1226K|ABCA8_uc010wqq.1_Silent_p.K1226K	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1186						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TCATTGATTTCTTTCCAAACT	0.284													13	36					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66883549	66883549	+	Silent	SNP	G	A	A	rs142750568		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:66883549G>A	uc002jhp.2	-	23	3302	c.3123C>T	c.(3121-3123)TTC>TTT	p.F1041F	ABCA8_uc002jhq.2_Silent_p.F1081F|ABCA8_uc010wqq.1_Silent_p.F1081F|ABCA8_uc010wqr.1_Silent_p.F1020F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1041	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					ATATAAAAACGAAGACCAAGA	0.413													53	210					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66914311	66914311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:66914311C>T	uc002jhp.2	-	14	1983	c.1804G>A	c.(1804-1806)GAA>AAA	p.E602K	ABCA8_uc002jhq.2_Missense_Mutation_p.E642K|ABCA8_uc010wqq.1_Missense_Mutation_p.E642K|ABCA8_uc010wqr.1_Missense_Mutation_p.E581K|ABCA8_uc002jhr.2_Missense_Mutation_p.E642K	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	602	ABC transporter 1.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GCAGTTGGTTCATCCAACAGG	0.403													9	60					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66928483	66928483	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:66928483C>T	uc002jhp.2	-	6	922	c.743G>A	c.(742-744)AGG>AAG	p.R248K	ABCA8_uc002jhq.2_Missense_Mutation_p.R248K|ABCA8_uc010wqq.1_Missense_Mutation_p.R248K|ABCA8_uc010wqr.1_Missense_Mutation_p.R187K|ABCA8_uc002jhr.2_Missense_Mutation_p.R248K|ABCA8_uc002jhs.2_Missense_Mutation_p.R248K|ABCA8_uc002jht.2_Missense_Mutation_p.R248K	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	248						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					CATCCTTTTCCTCTCTCTTGT	0.388													23	41					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66929360	66929360	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:66929360C>T	uc002jhp.2	-	5	698	c.519G>A	c.(517-519)TGG>TGA	p.W173*	ABCA8_uc002jhq.2_Nonsense_Mutation_p.W173*|ABCA8_uc010wqq.1_Nonsense_Mutation_p.W173*|ABCA8_uc010wqr.1_Nonsense_Mutation_p.W112*|ABCA8_uc002jhr.2_Nonsense_Mutation_p.W173*|ABCA8_uc002jhs.2_Nonsense_Mutation_p.W173*|ABCA8_uc002jht.2_Nonsense_Mutation_p.W173*	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	173						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					AACCTTCCTTCCAAAATACTG	0.303													49	143					0	0	1	0	0
ABCA9	10350	broad.mit.edu	37	17	66980196	66980196	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:66980196C>T	uc002jhu.2	-	35	4642	c.4499_splice	c.e35+1	p.R1500_splice	ABCA9_uc010dez.2_Splice_Site_p.R1462_splice	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9						transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					CAGGCACTCACCTCAGCCTTC	0.592													45	80					0	0	1	0	0
ABCA9	10350	broad.mit.edu	37	17	67016572	67016572	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67016572G>A	uc002jhu.2	-	19	2700	c.2557C>T	c.(2557-2559)CGC>TGC	p.R853C	ABCA9_uc010dez.2_Missense_Mutation_p.R853C	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	853					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					TTTAGGAAGCGAACTTTTGCT	0.398													49	116					0	0	1	0	0
ABCA9	10350	broad.mit.edu	37	17	67028325	67028325	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67028325C>T	uc002jhu.2	-	10	1512	c.1369G>A	c.(1369-1371)GAA>AAA	p.E457K	ABCA9_uc010dez.2_Missense_Mutation_p.E457K	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	457					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					GAATCTGTTTCATTCTCAAGG	0.413													36	74					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67092929	67092929	+	Missense_Mutation	SNP	G	A	A	rs138992705	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67092929G>A	uc002jhw.1	-	24	3309	c.3134C>T	c.(3133-3135)TCC>TTC	p.S1045F		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1045					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CCATAGCTGGGACTTAGCATT	0.323													6	52					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67109377	67109377	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67109377G>A	uc002jhw.1	-	15	2202	c.2027C>T	c.(2026-2028)GCT>GTT	p.A676V	ABCA6_uc002jhx.1_Missense_Mutation_p.A129V	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	676	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CAGGATGTCAGCCTCATCCAT	0.483													15	55					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67124879	67124879	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67124879G>A	uc002jhw.1	-	8	1175	c.1000C>T	c.(1000-1002)CTC>TTC	p.L334F		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	334	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					AGGGTAAGGAGAAACACAACC	0.408													25	117					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67129918	67129918	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67129918G>A	uc002jhw.1	-	6	830	c.655C>T	c.(655-657)CAC>TAC	p.H219Y		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	219					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					ATCTCATTGTGAAGAAGATTT	0.313													10	67					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67136784	67136784	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67136784G>A	uc002jhw.1	-	2	236	c.61C>T	c.(61-63)CTT>TTT	p.L21F	ABCA6_uc002jhy.2_Missense_Mutation_p.L19F	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	21					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CATTTCTTAAGAAAATTCTTG	0.363													23	90					0	0	1	0	0
ABCA10	10349	broad.mit.edu	37	17	67183865	67183865	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67183865G>A	uc010dfa.1	-	20	3166	c.2287C>T	c.(2287-2289)CGC>TGC	p.R763C	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_Missense_Mutation_p.R364C	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	763					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					TTTAAGAAGCGAAGTGTTGCC	0.383													33	85					0	0	1	0	0
ABCA5	23461	broad.mit.edu	37	17	67260957	67260957	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67260957A>G	uc002jif.2	-	23	4452	c.3234T>C	c.(3232-3234)TTT>TTC	p.F1078F	ABCA5_uc002jib.2_Silent_p.F44F|ABCA5_uc002jic.2_Silent_p.F301F|ABCA5_uc002jid.2_5'UTR|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Silent_p.F1078F	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	1078	Helical; (Potential).				cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					TAAGAATGATAAAAAATAAGG	0.308													26	95					0	0	1	0	0
ABCA5	23461	broad.mit.edu	37	17	67283854	67283854	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67283854G>A	uc002jif.2	-	14	3159	c.1941C>T	c.(1939-1941)CCC>CCT	p.P647P	ABCA5_uc002jic.2_5'Flank|ABCA5_uc002jid.2_5'UTR|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Silent_p.P647P|ABCA5_uc002jih.2_Silent_p.P647P|ABCA5_uc010dfe.2_Silent_p.P647P	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	647	ABC transporter 1.				cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					GTCGAGAACAGGGGTCCATTC	0.413													45	96					0	0	1	0	0
ABCA5	23461	broad.mit.edu	37	17	67303082	67303082	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67303082A>T	uc002jif.2	-	5	1790	c.572T>A	c.(571-573)GTT>GAT	p.V191D	ABCA5_uc002jig.2_Missense_Mutation_p.V191D|ABCA5_uc002jih.2_Missense_Mutation_p.V191D|ABCA5_uc010dfe.2_Missense_Mutation_p.V191D	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	191					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					CCAAAGAGAAACATTGGTCTT	0.343													41	87					0	0	1	0	0
MAP2K6	5608	broad.mit.edu	37	17	67513729	67513729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:67513729C>T	uc002jij.2	+	4	509	c.221C>T	c.(220-222)CCC>CTC	p.P74L	MAP2K6_uc002jii.2_Missense_Mutation_p.P74L|MAP2K6_uc002jik.2_Missense_Mutation_p.P104L	NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	74	Protein kinase.				activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					CGGCACGTGCCCAGCGGGCAG	0.507													14	33					0	0	1	0	0
KCNJ16	3773	broad.mit.edu	37	17	68129141	68129141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:68129141C>T	uc002jin.2	+	5	1399	c.913C>T	c.(913-915)CTC>TTC	p.L305F	KCNJ16_uc002jio.2_Missense_Mutation_p.L305F|KCNJ16_uc002jip.2_Missense_Mutation_p.L305F|KCNJ16_uc002jiq.2_Missense_Mutation_p.L337F	NM_018658	NP_061128	Q9NPI9	IRK16_HUMAN	potassium inwardly-rectifying channel J16	305	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Breast(10;2.96e-09)					CCGAGAAATTCTCTGGGGCCA	0.403													33	116					0	0	1	0	0
KCNJ2	3759	broad.mit.edu	37	17	68171911	68171911	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:68171911C>T	uc010dfg.2	+	2	1132	c.731C>T	c.(730-732)CCT>CTT	p.P244L	KCNJ2_uc002jir.2_Missense_Mutation_p.P244L	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	244	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					GAGTATATCCCTCTGGATCAA	0.443													24	70					0	0	1	0	0
SOX9	6662	broad.mit.edu	37	17	70120479	70120479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:70120479G>A	uc002jiw.2	+	3	1853	c.1481G>A	c.(1480-1482)AGC>AAC	p.S494N		NM_000346	NP_000337	P48436	SOX9_HUMAN	transcription factor SOX9	494					cAMP-mediated signaling|negative regulation of transcription, DNA-dependent|positive regulation of branching involved in ureteric bud morphogenesis|protein complex assembly|renal vesicle induction	nucleus|protein complex	core promoter sequence-specific DNA binding|enhancer binding|protein kinase A catalytic subunit binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription				0		Colorectal(1115;0.245)	STAD - Stomach adenocarcinoma(260;0.119)			CAGACCCACAGCCCCCAGCAC	0.607													10	95					0	0	1	0	0
SSTR2	6752	broad.mit.edu	37	17	71166148	71166148	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:71166148C>T	uc002jje.2	+	2	1050	c.690C>T	c.(688-690)TTC>TTT	p.F230F		NM_001050	NP_001041	P30874	SSR2_HUMAN	somatostatin receptor 2	230	Cytoplasmic (Potential).				digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity				0			LUSC - Lung squamous cell carcinoma(166;0.197)			GCTACCTGTTCATTATCATCA	0.512													38	139					0	0	1	0	0
C17orf80	55028	broad.mit.edu	37	17	71232942	71232942	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:71232942C>T	uc002jjm.3	+	3	1515	c.1321C>T	c.(1321-1323)CAG>TAG	p.Q441*	C17orf80_uc010wqu.1_Nonsense_Mutation_p.Q441*|C17orf80_uc010dfj.2_Nonsense_Mutation_p.Q441*|C17orf80_uc002jjk.1_Nonsense_Mutation_p.Q441*|C17orf80_uc002jjl.3_Nonsense_Mutation_p.Q441*	NM_017941	NP_060411	Q9BSJ5	CQ080_HUMAN	lung cancer-related protein 8 isoform a	441	Extracellular (Potential).					integral to membrane				skin(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			TCACACTCCTCAGAGCCCCTT	0.552													31	67					0	0	1	0	0
CDC42EP4	23580	broad.mit.edu	37	17	71281633	71281633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:71281633G>A	uc002jjn.2	-	2	1154	c.1007C>T	c.(1006-1008)TCA>TTA	p.S336L	CDC42EP4_uc002jjo.2_Missense_Mutation_p.S336L|CDC42EP4_uc002jjp.1_Missense_Mutation_p.S266L	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	336					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			TGGCTGTCTTGAGACAGCAGC	0.647													33	63					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71348651	71348651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:71348651C>T	uc010dfm.2	-	41	5719	c.5719G>A	c.(5719-5721)GGT>AGT	p.G1907S	SDK2_uc002jjt.3_Missense_Mutation_p.G1047S	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1907	Fibronectin type-III 13.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GTGCCGAAACCATAGTCGTTG	0.637													4	21					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71391399	71391399	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:71391399C>T	uc010dfm.2	-	25	3487	c.3487G>A	c.(3487-3489)GAG>AAG	p.E1163K	SDK2_uc002jjt.3_Missense_Mutation_p.E322K|SDK2_uc010dfn.2_Missense_Mutation_p.E842K	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1163	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion	integral to membrane				ovary(2)	2						TCCAGGTCCTCGATGGTGTAG	0.647													12	26					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71394475	71394475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:71394475G>A	uc010dfm.2	-	23	3187	c.3187C>T	c.(3187-3189)CCC>TCC	p.P1063S	SDK2_uc002jjt.3_Missense_Mutation_p.P222S|SDK2_uc010dfn.2_Missense_Mutation_p.P742S	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1063	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						CAGGTGAAGGGGTTGAGGTCG	0.637													23	82					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71395335	71395335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:71395335G>A	uc010dfm.2	-	22	3065	c.3065C>T	c.(3064-3066)TCC>TTC	p.S1022F	SDK2_uc002jjt.3_Missense_Mutation_p.S181F|SDK2_uc010dfn.2_Missense_Mutation_p.S701F	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1022	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GCGGGAGATGGAGGTTTTCCC	0.637													15	24					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71418430	71418430	+	Missense_Mutation	SNP	C	T	T	rs140473608	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:71418430C>T	uc010dfm.2	-	15	2041	c.2041G>A	c.(2041-2043)GAG>AAG	p.E681K	SDK2_uc010dfn.2_Missense_Mutation_p.E360K	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	681	Extracellular (Potential).|Fibronectin type-III 1.				cell adhesion	integral to membrane				ovary(2)	2						CCTCACCTCTCGGTGTCTTTG	0.607													23	48					0	0	1	0	0
TTYH2	94015	broad.mit.edu	37	17	72249256	72249256	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72249256C>T	uc002jkc.2	+	12	1327	c.1296C>T	c.(1294-1296)CCC>CCT	p.P432P	TTYH2_uc010wqw.1_Silent_p.P411P|TTYH2_uc002jkd.2_Silent_p.P111P	NM_032646	NP_116035	Q9BSA4	TTYH2_HUMAN	tweety 2 isoform 1	432	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity|protein binding			ovary(3)|large_intestine(1)	4						ATGATGACCCCTTTAACCCCC	0.582													56	193					0	0	1	0	0
DNAI2	64446	broad.mit.edu	37	17	72295967	72295967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72295967G>A	uc002jkf.2	+	7	934	c.835G>A	c.(835-837)GAG>AAG	p.E279K	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	279	WD 3.				cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						GACGGGCACCGAGTGCTTCTC	0.617									Kartagener_syndrome				15	40					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72324627	72324627	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72324627C>T	uc002jkm.3	+	2	241	c.103C>T	c.(103-105)CAT>TAT	p.H35Y	KIF19_uc002jkj.2_Missense_Mutation_p.H35Y|KIF19_uc002jkk.2_Missense_Mutation_p.H35Y|KIF19_uc002jkl.2_Missense_Mutation_p.H35Y	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	35	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CCTCATCGCCCATAAAGTGGA	0.627													4	12					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72338847	72338847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72338847G>A	uc002jkm.3	+	4	448	c.310G>A	c.(310-312)GGC>AGC	p.G104S	KIF19_uc002jkj.2_Missense_Mutation_p.G104S|KIF19_uc002jkk.2_Missense_Mutation_p.G104S|KIF19_uc002jkl.2_Missense_Mutation_p.G104S	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	104	ATP (By similarity).|Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CTTTGCCTATGGCCCCACAGG	0.592													25	55					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72340461	72340461	+	Missense_Mutation	SNP	G	A	A	rs141653211		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72340461G>A	uc002jkm.3	+	6	694	c.556G>A	c.(556-558)GAA>AAA	p.E186K	KIF19_uc002jkj.2_Missense_Mutation_p.E186K|KIF19_uc002jkk.2_Intron|KIF19_uc002jkl.2_Intron	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	186	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CGGCATCACCGAAGTCTCCAC	0.632													10	25					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72345460	72345460	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72345460G>A	uc002jkm.3	+	10	1323	c.1185G>A	c.(1183-1185)CAG>CAA	p.Q395Q	KIF19_uc002jkj.2_Silent_p.Q395Q|KIF19_uc002jkk.2_Silent_p.Q353Q|KIF19_uc002jkl.2_Silent_p.Q353Q	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	395					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						GGGGCCGGCAGGATCGGGGTG	0.602													12	17					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72346896	72346896	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72346896G>A	uc002jkm.3	+	12	1577	c.1439G>A	c.(1438-1440)CGA>CAA	p.R480Q	KIF19_uc002jkj.2_Missense_Mutation_p.R480Q|KIF19_uc002jkk.2_Missense_Mutation_p.R438Q|KIF19_uc002jkl.2_Missense_Mutation_p.R438Q	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	480					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						GAGGAGCAGCGAAAGGAGTGC	0.647													27	89					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72349019	72349019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72349019G>A	uc002jkm.3	+	15	2178	c.2040G>A	c.(2038-2040)CTG>CTA	p.L680L		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	680					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						ATTCTGACCTGGAGAGTGTGA	0.597													32	82					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72350309	72350309	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72350309G>A	uc002jkm.3	+	18	2455	c.2317G>A	c.(2317-2319)GAG>AAG	p.E773K		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	773					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						AGAGAGGAAGGAGATCCTGAC	0.617													34	94					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72351362	72351362	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72351362G>A	uc002jkm.3	+	20	3046	c.2908G>A	c.(2908-2910)GGT>AGT	p.G970S		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	970					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CCCCAACCCAGGTGGTGGTTC	0.667													16	77					0	0	1	0	0
BTBD17	388419	broad.mit.edu	37	17	72356361	72356361	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72356361C>T	uc002jkn.2	-	2	109	c.109G>A	c.(109-111)GAG>AAG	p.E37K		NM_001080466	NP_001073935	A6NE02	BTBDH_HUMAN	BTB (POZ) domain containing 17 precursor	37						extracellular region					0						CCAGCTGCCTCCCCGCCAACA	0.652													3	15					0	0	1	0	0
GPR142	350383	broad.mit.edu	37	17	72363848	72363848	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72363848C>T	uc010wqy.1	+	1	204	c.204C>T	c.(202-204)CTC>CTT	p.L68L	GPR142_uc010wqx.1_5'UTR	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	68	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GCTGGGACCTCCGAATAAGGC	0.552													7	34					0	0	1	0	0
GPR142	350383	broad.mit.edu	37	17	72367986	72367986	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72367986C>T	uc010wqy.1	+	4	636	c.636C>T	c.(634-636)TTC>TTT	p.F212F	GPR142_uc010wqx.1_Silent_p.F124F	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	212	Helical; Name=2; (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TCATCGTGTTCGCGGGCTTCC	0.652													14	20					0	0	1	0	0
GPR142	350383	broad.mit.edu	37	17	72368614	72368614	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72368614C>T	uc010wqy.1	+	4	1264	c.1264C>T	c.(1264-1266)CGG>TGG	p.R422W	GPR142_uc010wqx.1_Missense_Mutation_p.R334W	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	422	Cytoplasmic (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CAAGACTTTCCGGGCCACTGT	0.617													25	60					0	0	1	0	0
GPRC5C	55890	broad.mit.edu	37	17	72443165	72443165	+	Nonstop_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72443165T>G	uc002jks.2	+	3	1363	c.1324T>G	c.(1324-1326)TGA>GGA	p.*442G	GPRC5C_uc002jkp.2_Nonstop_Mutation_p.*487G|GPRC5C_uc002jkq.2_3'UTR|GPRC5C_uc002jkr.2_Nonstop_Mutation_p.*454G|GPRC5C_uc002jkt.2_Intron|GPRC5C_uc002jku.2_Intron	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	442						cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						CGTGTGGGACTGAGTCAGCGG	0.667													30	84					0	0	1	0	0
CD300A	11314	broad.mit.edu	37	17	72473587	72473587	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72473587C>T	uc002jkv.2	+	4	867	c.546C>T	c.(544-546)CTC>CTT	p.L182L	CD300A_uc002jkw.2_Silent_p.L69L|CD300A_uc010dfr.2_Silent_p.L69L|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	182	Helical; (Potential).				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						TCCCGCTGCTCCTCTCCCTGC	0.488													16	43					0	0	1	0	0
CD300A	11314	broad.mit.edu	37	17	72473661	72473661	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72473661G>A	uc002jkv.2	+	4	941	c.620G>A	c.(619-621)TGG>TAG	p.W207*	CD300A_uc002jkw.2_Nonsense_Mutation_p.W94*|CD300A_uc010dfr.2_Nonsense_Mutation_p.W94*|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	207	Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						TTTCAGAAATGGATCAAAGGT	0.597													6	35					0	0	1	0	0
CD300LB	124599	broad.mit.edu	37	17	72522000	72522001	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72522000_72522001GT>AA	uc002jkx.2	-	2	380_381	c.367_368AC>TT	c.(367-369)ACG>TTG	p.T123L	CD300LB_uc010wqz.1_Missense_Mutation_p.T123L	NM_174892	NP_777552	A8K4G0	CLM7_HUMAN	CD300 molecule-like family member b	86	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						CACAGTGAACGTGCGGTCTTTC	0.525													65	134					0	0	1	0	0
CD300C	10871	broad.mit.edu	37	17	72540779	72540779	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72540779G>A	uc002jky.1	-	2	730	c.369C>T	c.(367-369)CCC>CCT	p.P123P		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	123	Pro-rich.|Extracellular (Potential).|Ig-like V-type.				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						CCTCGACAATGGGATCATGAA	0.577													15	53					0	0	1	0	0
CD300C	10871	broad.mit.edu	37	17	72540995	72540995	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72540995G>A	uc002jky.1	-	2	514	c.153C>T	c.(151-153)ACC>ACT	p.T51T		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	51	Extracellular (Potential).|Ig-like V-type.				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						ATTTGTTGAGGGTCCTGTGTT	0.542													40	71					0	0	1	0	0
C17orf77	146723	broad.mit.edu	37	17	72588686	72588686	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72588686G>A	uc002jla.1	+	3	863	c.501G>A	c.(499-501)GGG>GGA	p.G167G	CD300LD_uc002jkz.2_5'Flank	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	167						extracellular region					0						GGAGCTGCGGGATCTACTGCC	0.597													18	35					0	0	1	0	0
C17orf77	146723	broad.mit.edu	37	17	72588857	72588857	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72588857C>T	uc002jla.1	+	3	1034	c.672C>T	c.(670-672)TCC>TCT	p.S224S	CD300LD_uc002jkz.2_5'Flank	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	224						extracellular region					0						TTGCCTCTTCCTGCCCTGGGC	0.488													23	73					0	0	1	0	0
CD300LF	146722	broad.mit.edu	37	17	72691309	72691309	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72691309C>T	uc002jlg.2	-	7	902	c.799G>A	c.(799-801)GGC>AGC	p.G267S	RAB37_uc002jlc.2_Intron|RAB37_uc010dfu.2_Intron|RAB37_uc002jld.2_Intron|CD300LF_uc002jlf.2_Missense_Mutation_p.G270S|CD300LF_uc010dfw.2_RNA|CD300LF_uc002jlh.2_3'UTR|CD300LF_uc002jli.2_3'UTR|CD300LF_uc010wra.1_Missense_Mutation_p.G282S	NM_139018	NP_620587	Q8TDQ1	CLM1_HUMAN	NK inhibitory receptor precursor	267	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			upper_aerodigestive_tract(1)	1						CTGAGGTGGCCCATGTTGCAG	0.607													23	51					0	0	1	0	0
RAB37	326624	broad.mit.edu	37	17	72740483	72740483	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72740483G>A	uc002jlk.2	+	6	459	c.403G>A	c.(403-405)GAC>AAC	p.D135N	RAB37_uc002jlc.2_Missense_Mutation_p.D128N|RAB37_uc010dfu.2_Missense_Mutation_p.D128N|RAB37_uc002jld.2_Missense_Mutation_p.D128N|RAB37_uc010wrb.1_Missense_Mutation_p.D103N|RAB37_uc010wrc.1_Missense_Mutation_p.D140N|RAB37_uc010wrd.1_Missense_Mutation_p.D103N|RAB37_uc010wre.1_Missense_Mutation_p.D98N|RAB37_uc002jll.3_RNA	NM_001006638	NP_001006639	Q96AX2	RAB37_HUMAN	RAB37, member RAS oncogene family isoform 2	135					protein transport|small GTPase mediated signal transduction	ER-Golgi intermediate compartment	GTP binding			ovary(1)	1						TGCCCAGAGGGACGTGGTGAT	0.612											OREG0024716	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	85					0	0	1	0	0
GRIN2C	2905	broad.mit.edu	37	17	72842210	72842210	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72842210C>T	uc002jlt.1	-	11	2501	c.2345G>A	c.(2344-2346)GGG>GAG	p.G782E	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Missense_Mutation_p.G782E	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	782	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	CCCACCGTCCCCCAGGAACTG	0.612													34	104					0	0	1	0	0
GRIN2C	2905	broad.mit.edu	37	17	72846421	72846421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72846421G>A	uc002jlt.1	-	6	1571	c.1415C>T	c.(1414-1416)TCC>TTC	p.S472F	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Missense_Mutation_p.S472F	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	472	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	CAGGTCGTAGGAGAATTTGAC	0.607													49	118					0	0	1	0	0
GRIN2C	2905	broad.mit.edu	37	17	72846493	72846493	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72846493G>A	uc002jlt.1	-	6	1499	c.1343C>T	c.(1342-1344)CCC>CTC	p.P448L	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Missense_Mutation_p.P448L	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	448	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	CTTGGTGTAGGGGGCCACGTC	0.622													32	119					0	0	1	0	0
GRIN2C	2905	broad.mit.edu	37	17	72848173	72848173	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72848173G>A	uc002jlt.1	-	3	1133	c.977C>T	c.(976-978)CCT>CTT	p.P326L	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Missense_Mutation_p.P326L|GRIN2C_uc002jlv.1_3'UTR	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	326	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	CTCCCGGGCAGGGCTGACGGG	0.622													5	15					0	0	1	0	0
FDXR	2232	broad.mit.edu	37	17	72862289	72862289	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72862289G>A	uc002jly.2	-	5	558	c.471C>T	c.(469-471)TTC>TTT	p.F157F	FDXR_uc010wri.1_Silent_p.F105F|FDXR_uc010wrj.1_Silent_p.F155F|FDXR_uc002jlw.2_5'UTR|FDXR_uc002jlx.2_Silent_p.F157F|FDXR_uc002jmc.2_Silent_p.F158F|FDXR_uc010wrk.1_Silent_p.F188F|FDXR_uc010wrl.1_Silent_p.F200F|FDXR_uc002jma.2_Silent_p.F158F|FDXR_uc010wrm.1_Silent_p.F117F|FDXR_uc002jlz.2_Silent_p.F149F|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	157					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					ACCAGCCCACGAAGGCCCGGG	0.652													11	114					0	0	1	0	0
FDXR	2232	broad.mit.edu	37	17	72862917	72862917	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72862917G>A	uc002jly.2	-	3	346	c.259C>T	c.(259-261)CCC>TCC	p.P87S	FDXR_uc010wri.1_Missense_Mutation_p.P35S|FDXR_uc010wrj.1_Missense_Mutation_p.P85S|FDXR_uc002jlw.2_5'UTR|FDXR_uc002jlx.2_Missense_Mutation_p.P87S|FDXR_uc002jmc.2_Missense_Mutation_p.P88S|FDXR_uc010wrk.1_Missense_Mutation_p.P118S|FDXR_uc010wrl.1_Missense_Mutation_p.P130S|FDXR_uc002jma.2_Missense_Mutation_p.P88S|FDXR_uc010wrm.1_Missense_Mutation_p.P88S|FDXR_uc002jlz.2_Missense_Mutation_p.P87S|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	87					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					TTCACCTCGGGGTGATCAGGC	0.632													14	33					0	0	1	0	0
FADS6	283985	broad.mit.edu	37	17	72878706	72878706	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72878706G>A	uc002jmd.1	-	3	504	c.492C>T	c.(490-492)TTC>TTT	p.F164F	FADS6_uc010wrn.1_Missense_Mutation_p.S81F	NM_178128	NP_835229	Q8N9I5	FADS6_HUMAN	fatty acid desaturase domain family, member 6	170	Helical; (Potential).				fatty acid biosynthetic process	integral to membrane	oxidoreductase activity				0	all_lung(278;0.172)|Lung NSC(278;0.207)					AAGGAGCAAGGAACATGTAGA	0.612													6	16					0	0	1	0	0
USH1G	124590	broad.mit.edu	37	17	72916336	72916336	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72916336G>A	uc002jme.1	-	2	778	c.595C>T	c.(595-597)CTG>TTG	p.L199L	USH1G_uc010wro.1_Silent_p.L96L	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	199					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					GAGTACGGCAGGTGGCTGCCC	0.687													16	43					0	0	1	0	0
OTOP2	92736	broad.mit.edu	37	17	72926672	72926672	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72926672G>A	uc010wrp.1	+	7	1031	c.942G>A	c.(940-942)GTG>GTA	p.V314V		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	314						integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					AGGTTCAAGTGAGCGGGGACG	0.602													7	37					0	0	1	0	0
OTOP3	347741	broad.mit.edu	37	17	72937552	72937552	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72937552G>A	uc010wrr.1	+	2	138	c.138G>A	c.(136-138)AAG>AAA	p.K46K	OTOP3_uc010wrq.1_Silent_p.K28K	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	46						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					CCCCGGAGAAGGAGAACCGAG	0.522													6	15					0	0	1	0	0
OTOP3	347741	broad.mit.edu	37	17	72938120	72938120	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72938120C>T	uc010wrr.1	+	3	615	c.615C>T	c.(613-615)TTC>TTT	p.F205F	OTOP3_uc010wrq.1_Silent_p.F187F	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	205	Helical; (Potential).					integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					AGATGGTCTTCATCGGCGTCC	0.557													12	34					0	0	1	0	0
OTOP3	347741	broad.mit.edu	37	17	72943142	72943142	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72943142G>A	uc010wrr.1	+	6	1192	c.1192G>A	c.(1192-1194)GGG>AGG	p.G398R	OTOP3_uc010wrq.1_Missense_Mutation_p.G380R	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	398						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					AGCCATACACGGGCTGGAGGA	0.607													18	41					0	0	1	0	0
OTOP3	347741	broad.mit.edu	37	17	72943463	72943464	+	Missense_Mutation	DNP	GG	AA	AA	rs113286281		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72943463_72943464GG>AA	uc010wrr.1	+	6	1513_1514	c.1513_1514GG>AA	c.(1513-1515)GGC>AAC	p.G505N	OTOP3_uc010wrq.1_Missense_Mutation_p.G487N	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	505						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					GCTGGGCCAGGGCCTGCAGCGG	0.644													17	42					0	0	1	0	0
C17orf28	283987	broad.mit.edu	37	17	72952047	72952047	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:72952047G>A	uc002jmj.3	-	13	1625	c.1476C>T	c.(1474-1476)TCC>TCT	p.S492S	C17orf28_uc002jmi.2_5'Flank|C17orf28_uc010wrs.1_Silent_p.S291S	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	492						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					TGAGGTAGGGGGACACTGTAA	0.617													7	102					0	0	1	0	0
SLC16A5	9121	broad.mit.edu	37	17	73096514	73096514	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73096514C>T	uc002jmr.2	+	5	1128	c.756C>T	c.(754-756)TTC>TTT	p.F252F	SLC16A5_uc002jms.1_Silent_p.F252F|SLC16A5_uc002jmt.2_Silent_p.F252F|SLC16A5_uc002jmu.2_Silent_p.F252F|SLC16A5_uc010wrt.1_Silent_p.F292F	NM_004695	NP_004686	O15375	MOT6_HUMAN	solute carrier family 16, member 5	252	Helical; (Potential).				organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)	TCCTGGGCTTCCCACTGCCAC	0.607													11	46					0	0	1	0	0
SLC16A5	9121	broad.mit.edu	37	17	73096880	73096880	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73096880C>T	uc002jmr.2	+	5	1494	c.1122C>T	c.(1120-1122)GGC>GGT	p.G374G	SLC16A5_uc002jms.1_Silent_p.G374G|SLC16A5_uc002jmt.2_Silent_p.G374G|SLC16A5_uc002jmu.2_Silent_p.G374G|SLC16A5_uc010wrt.1_Silent_p.G414G	NM_004695	NP_004686	O15375	MOT6_HUMAN	solute carrier family 16, member 5	374	Helical; (Potential).				organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)	TCCTGGACGGCCTTGCTTTCC	0.592													11	11					0	0	1	0	0
SLC16A5	9121	broad.mit.edu	37	17	73100164	73100164	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73100164C>T	uc002jmr.2	+	6	1625	c.1253C>T	c.(1252-1254)GCC>GTC	p.A418V	SLC16A5_uc002jms.1_Missense_Mutation_p.A418V|SLC16A5_uc002jmt.2_Missense_Mutation_p.A418V|SLC16A5_uc002jmu.2_Missense_Mutation_p.A418V|SLC16A5_uc010wrt.1_Missense_Mutation_p.A458V	NM_004695	NP_004686	O15375	MOT6_HUMAN	solute carrier family 16, member 5	418	Cytoplasmic (Potential).				organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)	AGCTTCTACGCCCTGCAGAAG	0.567													18	108					0	0	1	0	0
SLC25A19	60386	broad.mit.edu	37	17	73282450	73282450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73282450G>A	uc002jns.3	-	2	1133	c.223C>T	c.(223-225)CCG>TCG	p.P75S	SLC25A19_uc010dge.2_Missense_Mutation_p.P75S|SLC25A19_uc002jnv.3_Missense_Mutation_p.P75S|SLC25A19_uc002jnu.3_Missense_Mutation_p.P75S|SLC25A19_uc002jnw.3_Missense_Mutation_p.P75S|SLC25A19_uc002jnt.3_Missense_Mutation_p.P75S	NM_021734	NP_068380	Q9HC21	TPC_HUMAN	solute carrier family 25, member 19	75	Solcar 1.					integral to membrane|mitochondrial inner membrane	binding|deoxynucleotide transmembrane transporter activity			ovary(1)	1	all_cancers(13;5.98e-08)|all_epithelial(9;1.16e-08)|Breast(9;3.1e-08)		all cancers(21;6.82e-07)|Epithelial(20;6.86e-06)			AAAGCTGTCGGACCCTCCTCC	0.577													35	99					0	0	1	0	0
GRB2	2885	broad.mit.edu	37	17	73322082	73322082	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73322082G>A	uc002jnx.3	-	4	553	c.196C>T	c.(196-198)CCC>TCC	p.P66S	GRB2_uc002jny.3_Intron	NM_002086	NP_002077	P62993	GRB2_HUMAN	growth factor receptor-bound protein 2 isoform	66	SH2.				axon guidance|blood coagulation|cell junction assembly|cell-cell signaling|cellular response to ionizing radiation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|receptor internalization|signal transduction in response to DNA damage|T cell costimulation	cytosol|Golgi apparatus	epidermal growth factor receptor binding|insulin receptor substrate binding|SH3/SH2 adaptor activity			ovary(3)	3	all_cancers(13;5.44e-09)|all_epithelial(9;1.1e-09)|Breast(9;1.85e-09)|all_lung(278;0.222)		all cancers(21;1.09e-07)|Epithelial(20;1.23e-06)|Lung(188;0.185)		Pegademase bovine(DB00061)	TTGGCTCTGGGGATTTTGCCA	0.507													34	77					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73484038	73484039	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73484038_73484039CC>TT	uc002jnz.3	+	6	710_711	c.435_436CC>TT	c.(433-438)ATCCAG>ATTTAG	p.Q146*	KIAA0195_uc010wsa.1_Nonsense_Mutation_p.Q156*|KIAA0195_uc010wsb.1_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	146					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCAGGGAGATCCAGTGGCCCAG	0.599													14	49					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73486830	73486830	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73486830C>T	uc002jnz.3	+	11	1394	c.1119C>T	c.(1117-1119)GTC>GTT	p.V373V	KIAA0195_uc010wsa.1_Silent_p.V383V|KIAA0195_uc010wsb.1_Silent_p.V25V	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	373					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	p.V373I(1)		ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CGGAGGCTGTCTCCTCTCAGG	0.557													15	37					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73489018	73489018	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73489018C>T	uc002jnz.3	+	16	2196	c.1921C>T	c.(1921-1923)CCT>TCT	p.P641S	KIAA0195_uc010wsa.1_Missense_Mutation_p.P651S|KIAA0195_uc010wsb.1_Missense_Mutation_p.P281S|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	641					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			AGGCTTCACTCCTGGGGCCAA	0.607													47	130					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73491369	73491370	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73491369_73491370CC>TT	uc002jnz.3	+	21	3008_3009	c.2733_2734CC>TT	c.(2731-2736)TCCCGA>TCTTGA	p.R912*	KIAA0195_uc010wsa.1_Nonsense_Mutation_p.R922*|KIAA0195_uc010wsb.1_Nonsense_Mutation_p.R552*|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	912					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCACAGTGTCCCGAGATGATGC	0.589													9	31					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73554625	73554625	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73554625C>T	uc002joh.2	+	5	442	c.288C>T	c.(286-288)AGC>AGT	p.S96S	LLGL2_uc002jog.1_Silent_p.S96S|LLGL2_uc010dgf.1_Silent_p.S96S|LLGL2_uc002joi.2_Silent_p.S96S|LLGL2_uc010dgg.1_Silent_p.S96S|LLGL2_uc002joj.2_Silent_p.S85S	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	96	WD 2.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			ATGACAACAGCCTGCACCTTT	0.622													12	14					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73566202	73566202	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73566202C>T	uc002joh.2	+	15	1894	c.1740C>T	c.(1738-1740)TTC>TTT	p.F580F	LLGL2_uc002joi.2_Silent_p.F580F|LLGL2_uc010dgg.1_Silent_p.F580F|LLGL2_uc002joj.2_Silent_p.F569F|LLGL2_uc010wsd.1_Silent_p.F207F	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	580	WD 9.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			TTCAGCCCTTCGTGTTGGTGC	0.677													5	13					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73567066	73567066	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73567066C>T	uc002joh.2	+	17	2215	c.2061C>T	c.(2059-2061)GGC>GGT	p.G687G	LLGL2_uc002joi.2_Silent_p.G687G|LLGL2_uc010dgg.1_Silent_p.G687G|LLGL2_uc002joj.2_Silent_p.G676G|LLGL2_uc010wsd.1_Silent_p.G314G	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	687					cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			AGCGGCCAGGCCTCCAGAACA	0.642													33	92					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73567144	73567144	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73567144C>T	uc002joh.2	+	17	2293	c.2139C>T	c.(2137-2139)GTC>GTT	p.V713V	LLGL2_uc002joi.2_Silent_p.V713V|LLGL2_uc010dgg.1_Silent_p.V713V|LLGL2_uc002joj.2_Silent_p.V702V|LLGL2_uc010wsd.1_Silent_p.V340V	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	713	WD 11.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			CAGGCTTCGTCCGGACCCTGT	0.652													51	119					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73569208	73569208	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73569208C>T	uc002joh.2	+	20	2728	c.2574C>T	c.(2572-2574)GAC>GAT	p.D858D	LLGL2_uc002joi.2_Silent_p.D858D|LLGL2_uc010dgg.1_Silent_p.D858D|LLGL2_uc002joj.2_Silent_p.D847D|LLGL2_uc010wsd.1_Silent_p.D485D	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	858	WD 13.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			GAGCCGAGGACTACGGGGAGC	0.657													17	42					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73569264	73569264	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73569264C>T	uc002joh.2	+	20	2784	c.2630C>T	c.(2629-2631)TCG>TTG	p.S877L	LLGL2_uc002joi.2_Missense_Mutation_p.S877L|LLGL2_uc010dgg.1_Missense_Mutation_p.S877L|LLGL2_uc002joj.2_Missense_Mutation_p.S866L|LLGL2_uc010wsd.1_Missense_Mutation_p.S504L	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	877	WD 13.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			CAGGTGGTCTCGCTGCCCCTG	0.652													20	54					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73746301	73746301	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73746301G>A	uc002jpg.2	+	28	3613	c.3426G>A	c.(3424-3426)AAG>AAA	p.K1142K	ITGB4_uc002jph.2_Silent_p.K1142K|ITGB4_uc002jpi.3_Silent_p.K1142K|ITGB4_uc002jpj.2_Silent_p.K1142K	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1142	Fibronectin type-III 1.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity	p.K1142N(1)		lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGTCCAGGAAGATCCATTTCA	0.637											OREG0024739	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	61					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73748388	73748388	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73748388G>A	uc002jpg.2	+	31	4114	c.3927G>A	c.(3925-3927)GAG>GAA	p.E1309E	ITGB4_uc002jph.2_Silent_p.E1309E|ITGB4_uc002jpi.3_Silent_p.E1309E|ITGB4_uc002jpj.2_Silent_p.E1309E|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1309	Fibronectin type-III 2.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGGGGCCTGAGCGGGAGGCCA	0.672													30	90					0	0	1	0	0
UNC13D	201294	broad.mit.edu	37	17	73826224	73826224	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73826224C>T	uc002jpp.2	-	30	3219	c.2839G>A	c.(2839-2841)GAC>AAC	p.D947N		NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	947	C2 2.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			ACAAAGGGGTCGCTGGAGCCT	0.637									Familial_Hemophagocytic_Lymphohistiocytosis		OREG0024741	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	8					0	0	1	0	0
UNC13D	201294	broad.mit.edu	37	17	73832317	73832317	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73832317G>A	uc002jpp.2	-	16	1790	c.1410C>T	c.(1408-1410)TTC>TTT	p.F470F	UNC13D_uc010wsk.1_Silent_p.F470F|UNC13D_uc002jpq.1_Silent_p.F120F|UNC13D_uc010dgq.1_Silent_p.F266F	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	470	Interaction with RAB27A.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCTTCAGGTGGAACCATTCAG	0.667									Familial_Hemophagocytic_Lymphohistiocytosis				7	11					0	0	1	0	0
UNC13D	201294	broad.mit.edu	37	17	73836847	73836847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73836847G>A	uc002jpp.2	-	8	1059	c.679C>T	c.(679-681)CGC>TGC	p.R227C	UNC13D_uc010wsk.1_Missense_Mutation_p.R227C|UNC13D_uc002jpq.1_5'UTR|UNC13D_uc010dgq.1_Missense_Mutation_p.R24C	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	227					positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			ACGAACCTGCGAAGCCCATGC	0.597									Familial_Hemophagocytic_Lymphohistiocytosis				40	134					0	0	1	0	0
UNC13D	201294	broad.mit.edu	37	17	73839265	73839265	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73839265G>A	uc002jpp.2	-	3	616	c.236C>T	c.(235-237)TCT>TTT	p.S79F	UNC13D_uc010wsk.1_Missense_Mutation_p.S79F|UNC13D_uc002jpq.1_5'UTR|UNC13D_uc010dgq.1_5'Flank	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	79					positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			CAGCAGCTCAGAGGCCTCCGT	0.672									Familial_Hemophagocytic_Lymphohistiocytosis				21	39					0	0	1	0	0
MRPL38	64978	broad.mit.edu	37	17	73900778	73900778	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73900778G>A	uc010wso.1	-	2	315	c.90C>T	c.(88-90)CCC>CCT	p.P30P	FBF1_uc002jqa.1_RNA|MRPL38_uc002jpz.1_RNA	NM_032478	NP_115867	Q96DV4	RM38_HUMAN	mitochondrial ribosomal protein L38 precursor	30						actin cytoskeleton|mitochondrion|ribosome				pancreas(1)	1			all cancers(21;0.000154)|Epithelial(20;0.000156)|BRCA - Breast invasive adenocarcinoma(9;0.00936)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCCCAGCGGGGGTGTCCGGC	0.721													5	11					0	0	1	0	0
ACOX1	51	broad.mit.edu	37	17	73949573	73949573	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73949573G>A	uc002jqf.2	-	7	1193	c.903C>T	c.(901-903)ATC>ATT	p.I301I	ACOX1_uc010wsq.1_Silent_p.I263I|ACOX1_uc002jqe.2_Silent_p.I301I|ACOX1_uc010wsr.1_Silent_p.I233I	NM_007292	NP_009223	Q15067	ACOX1_HUMAN	acyl-Coenzyme A oxidase 1 isoform b	301					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|prostaglandin metabolic process|very long-chain fatty acid metabolic process	peroxisomal matrix	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity|flavin adenine dinucleotide binding|protein N-terminus binding			ovary(1)	1						CGCTGTATCGGATGGCAATGG	0.532													22	65					0	0	1	0	0
CDK3	1018	broad.mit.edu	37	17	73998208	73998208	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:73998208C>T	uc010dgt.2	+	4	376	c.300C>T	c.(298-300)CCC>CCT	p.P100P	CDK3_uc002jqg.3_Silent_p.P128P	NM_001258	NP_001249	Q00526	CDK3_HUMAN	cyclin-dependent kinase 3	100	Protein kinase.				cell division|cell proliferation|mitosis		ATP binding|cyclin-dependent protein kinase activity			central_nervous_system(1)	1						CAGAGCTCCCCCTGCACCTCA	0.597													20	56					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74003240	74003240	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74003240C>T	uc002jqi.2	-	22	6274	c.6046G>A	c.(6046-6048)GAG>AAG	p.E2016K	EVPL_uc010wss.1_Missense_Mutation_p.E2038K|EVPL_uc010wst.1_Missense_Mutation_p.E1486K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	2016	Globular 2.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CGGTACCCCTCCAGTGCCGCT	0.692													26	49					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74003537	74003537	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74003537C>T	uc002jqi.2	-	22	5977	c.5749G>A	c.(5749-5751)GTG>ATG	p.V1917M	EVPL_uc010wss.1_Missense_Mutation_p.V1939M|EVPL_uc010wst.1_Missense_Mutation_p.V1387M	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1917	Globular 2.|Plectin 5.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GCCTCGCCCACCGAGAGCCTC	0.662													9	61					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74004305	74004305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74004305C>T	uc002jqi.2	-	22	5209	c.4981G>A	c.(4981-4983)GAC>AAC	p.D1661N	EVPL_uc010wss.1_Missense_Mutation_p.D1683N|EVPL_uc010wst.1_Missense_Mutation_p.D1131N	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1661	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GCGTGGAGGTCCCGGAGCGTC	0.672													25	63					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74004825	74004825	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74004825C>T	uc002jqi.2	-	22	4689	c.4461G>A	c.(4459-4461)CAG>CAA	p.Q1487Q	EVPL_uc010wss.1_Silent_p.Q1509Q|EVPL_uc010wst.1_Silent_p.Q957Q	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1487	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGGTCTTCTCCTGGTCCAGGT	0.572													62	120					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74005674	74005674	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74005674C>T	uc002jqi.2	-	22	3840	c.3612G>A	c.(3610-3612)CCG>CCA	p.P1204P	EVPL_uc010wss.1_Silent_p.P1226P|EVPL_uc010wst.1_Silent_p.P674P	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1204	Central fibrous rod domain.|Plectin 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GCTCTGTCTCCGGATCCACCT	0.627													28	64					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74005808	74005808	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74005808C>T	uc002jqi.2	-	22	3706	c.3478G>A	c.(3478-3480)GAG>AAG	p.E1160K	EVPL_uc010wss.1_Missense_Mutation_p.E1182K|EVPL_uc010wst.1_Missense_Mutation_p.E630K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1160	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CTCTCCTCCTCGAGGAGGCTC	0.622													19	39					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74007901	74007901	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74007901G>A	uc002jqi.2	-	20	2748	c.2520C>T	c.(2518-2520)GCC>GCT	p.A840A	EVPL_uc010wss.1_Silent_p.A862A|EVPL_uc010wst.1_Silent_p.A310A	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	840	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GTCTCTTGGGGGCTGACACTG	0.622													12	30					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74011530	74011530	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74011530C>T	uc002jqi.2	-	15	2117	c.1889_splice	c.e15+1	p.K630_splice	EVPL_uc010wss.1_Splice_Site_p.K652_splice|EVPL_uc010wst.1_Splice_Site_p.K100_splice	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin						keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGAGCACTCACTTCTCCCCGT	0.667													11	82					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74013916	74013916	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74013916C>T	uc002jqi.2	-	14	1842	c.1614G>A	c.(1612-1614)CTG>CTA	p.L538L	EVPL_uc010wss.1_Silent_p.L560L|EVPL_uc010wst.1_Silent_p.L8L	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	538	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CTATCTGTCCCAGGTCTCCAT	0.672													21	53					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74013982	74013982	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74013982G>A	uc002jqi.2	-	14	1776	c.1548C>T	c.(1546-1548)GGC>GGT	p.G516G	EVPL_uc010wss.1_Silent_p.G538G|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	516	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCAGGTCTGAGCCAGATGGAG	0.657													18	55					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74015056	74015056	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74015056C>T	uc002jqi.2	-	11	1451	c.1223G>A	c.(1222-1224)CGA>CAA	p.R408Q	EVPL_uc010wss.1_Missense_Mutation_p.R408Q|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	408	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGGGTTTCTTCGCTGTGGCAG	0.682													4	13					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74017761	74017761	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74017761G>A	uc002jqi.2	-	8	1137	c.909C>T	c.(907-909)CCC>CCT	p.P303P	EVPL_uc010wss.1_Silent_p.P303P|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	303	Spectrin.|Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						gcaccTGGATGGGCCCCACCG	0.403													4	14					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74018548	74018548	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74018548G>A	uc002jqi.2	-	5	780	c.552C>T	c.(550-552)ATC>ATT	p.I184I	EVPL_uc010wss.1_Silent_p.I184I|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	184	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCTTCTGCAGGATGTTGTGCT	0.682													8	29					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74019403	74019403	+	Silent	SNP	G	A	A	rs148972745		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74019403G>A	uc002jqi.2	-	4	678	c.450C>T	c.(448-450)GTC>GTT	p.V150V	EVPL_uc010wss.1_Silent_p.V150V|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	150	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GTGCCCAGTCGACCCTGGGTC	0.607													38	90					0	0	1	0	0
SRP68	6730	broad.mit.edu	37	17	74044000	74044000	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74044000G>A	uc002jqk.1	-	10	1164	c.1129C>T	c.(1129-1131)CAA>TAA	p.Q377*	SRP68_uc010wsu.1_Nonsense_Mutation_p.Q276*|SRP68_uc002jql.1_Nonsense_Mutation_p.Q339*|SRP68_uc002jqj.1_Nonsense_Mutation_p.Q38*	NM_014230	NP_055045	Q9UHB9	SRP68_HUMAN	signal recognition particle 68kDa	377					response to drug	cytosol|endoplasmic reticulum|nucleolus|ribosome|signal recognition particle, endoplasmic reticulum targeting	RNA binding|signal recognition particle binding			ovary(1)	1						TGCAAGTATTGAAGATTAGAC	0.279													35	111					0	0	1	0	0
EXOC7	23265	broad.mit.edu	37	17	74087233	74087233	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74087233G>A	uc002jqs.2	-	7	987	c.892C>T	c.(892-894)CCT>TCT	p.P298S	EXOC7_uc010dgv.1_Missense_Mutation_p.P245S|EXOC7_uc002jqq.2_Missense_Mutation_p.P298S|EXOC7_uc010wsw.1_Missense_Mutation_p.P298S|EXOC7_uc010wsx.1_Intron|EXOC7_uc002jqr.2_Intron|EXOC7_uc010wsv.1_Missense_Mutation_p.P257S	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	298					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			CCTTCCAGAGGAATGAGGTTA	0.577													50	178					0	0	1	0	0
FOXJ1	2302	broad.mit.edu	37	17	74133578	74133578	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74133578C>T	uc002jqw.2	-	2	1212	c.1122G>A	c.(1120-1122)GAG>GAA	p.E374E	FOXJ1_uc002jqx.2_Silent_p.E374E	NM_001454	NP_001445	Q92949	FOXJ1_HUMAN	forkhead box J1	374					actin cytoskeleton organization|activation of Rho GTPase activity|central tolerance induction|cilium assembly|epithelial cell differentiation|establishment of apical/basal cell polarity|heart looping|humoral immune response|left/right pattern formation|leukocyte migration|lung development|negative regulation of B cell activation|negative regulation of germinal center formation|negative regulation of humoral immune response mediated by circulating immunoglobulin|negative regulation of interleukin-6 biosynthetic process|negative regulation of NF-kappaB transcription factor activity|negative regulation of T cell differentiation in thymus|negative regulation of T cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of central B cell tolerance induction|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			pancreas(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			CCAGGAAGGTCTCATCGAAGT	0.682													4	3					0	0	1	0	0
FOXJ1	2302	broad.mit.edu	37	17	74134004	74134004	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74134004G>A	uc002jqw.2	-	2	786	c.696C>T	c.(694-696)CCC>CCT	p.P232P	FOXJ1_uc002jqx.2_Silent_p.P232P|uc002jqy.1_5'Flank	NM_001454	NP_001445	Q92949	FOXJ1_HUMAN	forkhead box J1	232					actin cytoskeleton organization|activation of Rho GTPase activity|central tolerance induction|cilium assembly|epithelial cell differentiation|establishment of apical/basal cell polarity|heart looping|humoral immune response|left/right pattern formation|leukocyte migration|lung development|negative regulation of B cell activation|negative regulation of germinal center formation|negative regulation of humoral immune response mediated by circulating immunoglobulin|negative regulation of interleukin-6 biosynthetic process|negative regulation of NF-kappaB transcription factor activity|negative regulation of T cell differentiation in thymus|negative regulation of T cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of central B cell tolerance induction|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			pancreas(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			GGACAGCGCTGGGCTCCTGCG	0.726													3	7					0	0	1	0	0
FOXJ1	2302	broad.mit.edu	37	17	74134103	74134103	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74134103G>A	uc002jqw.2	-	2	687	c.597C>T	c.(595-597)CCC>CCT	p.P199P	FOXJ1_uc002jqx.2_Silent_p.P199P|uc002jqy.1_5'Flank	NM_001454	NP_001445	Q92949	FOXJ1_HUMAN	forkhead box J1	199	Fork-head.				actin cytoskeleton organization|activation of Rho GTPase activity|central tolerance induction|cilium assembly|epithelial cell differentiation|establishment of apical/basal cell polarity|heart looping|humoral immune response|left/right pattern formation|leukocyte migration|lung development|negative regulation of B cell activation|negative regulation of germinal center formation|negative regulation of humoral immune response mediated by circulating immunoglobulin|negative regulation of interleukin-6 biosynthetic process|negative regulation of NF-kappaB transcription factor activity|negative regulation of T cell differentiation in thymus|negative regulation of T cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of central B cell tolerance induction|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			pancreas(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			CCGCGTACTGGGGGTCAATGC	0.622													14	25					0	0	1	0	0
RNF157	114804	broad.mit.edu	37	17	74151734	74151734	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74151734G>A	uc002jqz.2	-	15	1676	c.1607C>T	c.(1606-1608)TCT>TTT	p.S536F	RNF157_uc002jra.2_Missense_Mutation_p.S536F|uc002jrb.1_RNA	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	536	Ser-rich.						zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			GTAGGAGCCAGACATGGAGGA	0.617													8	29					0	0	1	0	0
RNF157	114804	broad.mit.edu	37	17	74163761	74163761	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74163761G>A	uc002jqz.2	-	4	483	c.414C>T	c.(412-414)GCC>GCT	p.A138A	RNF157_uc002jra.2_Silent_p.A138A	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	138							zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			ACTCTTCCGTGGCCTGGTAAT	0.498													27	108					0	0	1	0	0
RNF157	114804	broad.mit.edu	37	17	74208526	74208526	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74208526C>T	uc002jqz.2	-	2	195	c.126G>A	c.(124-126)GAG>GAA	p.E42E	RNF157_uc002jra.2_Silent_p.E42E	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	42							zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			AGTCAAACTTCTCTCCTCCCA	0.403													8	83					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74276190	74276190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74276190G>A	uc002jrd.1	-	12	4354	c.4174C>T	c.(4174-4176)CGG>TGG	p.R1392W	QRICH2_uc010wsz.1_Intron|QRICH2_uc010dgw.1_Missense_Mutation_p.R236W	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1392							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GATTTCCACCGATCCTCCAGC	0.672													25	76					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74276746	74276746	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74276746C>T	uc002jrd.1	-	10	4132	c.3952G>A	c.(3952-3954)GAG>AAG	p.E1318K	QRICH2_uc010wsz.1_Missense_Mutation_p.E1244K|QRICH2_uc010dgw.1_Missense_Mutation_p.E162K	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1318	Potential.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						ACATCGATCTCCATCTCCAGG	0.587													18	78					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74276776	74276776	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74276776C>T	uc002jrd.1	-	10	4102	c.3922G>A	c.(3922-3924)GAA>AAA	p.E1308K	QRICH2_uc010wsz.1_Missense_Mutation_p.E1234K|QRICH2_uc010dgw.1_Missense_Mutation_p.E152K	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1308	Potential.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						TTGGCCTTTTCCTTTTCGAGC	0.592													28	93					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74276934	74276934	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74276934C>T	uc002jrd.1	-	9	4046	c.3866G>A	c.(3865-3867)CGG>CAG	p.R1289Q	QRICH2_uc010wsz.1_Missense_Mutation_p.R1215Q|QRICH2_uc010dgw.1_Missense_Mutation_p.R133Q	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1289	Potential.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						CTGTTTCTGCCGATGGTCCTC	0.622													22	62					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74287400	74287400	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74287400G>A	uc002jrd.1	-	4	3090	c.2910C>T	c.(2908-2910)GCC>GCT	p.A970A	QRICH2_uc010wsz.1_Silent_p.A896A|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	970							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GTCGGTCCGAGGCTCGTGTTC	0.522													23	42					0	0	1	0	0
PRPSAP1	5635	broad.mit.edu	37	17	74326663	74326663	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74326663G>A	uc010wta.1	-	5	994	c.548C>T	c.(547-549)TCA>TTA	p.S183L	PRPSAP1_uc010wtb.1_Missense_Mutation_p.S80L	NM_002766	NP_002757	Q14558	KPRA_HUMAN	phosphoribosyl pyrophosphate	154					nucleotide biosynthetic process		enzyme inhibitor activity|identical protein binding|magnesium ion binding|ribose phosphate diphosphokinase activity			ovary(1)	1						CAGGAAAGGTGAGGCTCTAAG	0.388													25	60					0	0	1	0	0
PRPSAP1	5635	broad.mit.edu	37	17	74328431	74328431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74328431G>A	uc010wta.1	-	4	822	c.376C>T	c.(376-378)CCC>TCC	p.P126S	PRPSAP1_uc010wtb.1_Missense_Mutation_p.P23S	NM_002766	NP_002757	Q14558	KPRA_HUMAN	phosphoribosyl pyrophosphate	97					nucleotide biosynthetic process		enzyme inhibitor activity|identical protein binding|magnesium ion binding|ribose phosphate diphosphokinase activity			ovary(1)	1						GGGAAGTAGGGGATGACCCCA	0.517													44	108					0	0	1	0	0
UBE2O	63893	broad.mit.edu	37	17	74401374	74401374	+	Silent	SNP	G	A	A	rs144543657	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74401374G>A	uc002jrm.3	-	3	566	c.501C>T	c.(499-501)ATC>ATT	p.I167I	UBE2O_uc002jrn.3_Silent_p.I167I	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	167							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						TGTTGACGTCGATCACCGTGC	0.622													18	42					0	0	1	0	0
UBE2O	63893	broad.mit.edu	37	17	74401595	74401596	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74401595_74401596GG>AA	uc002jrm.3	-	2	541_542	c.476_477CC>TT	c.(475-477)ACC>ATT	p.T159I	UBE2O_uc002jrn.3_Missense_Mutation_p.T159I	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	159							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						CAGGACTCACGGTGGATCGCAT	0.604													4	10					0	0	1	0	0
RHBDF2	79651	broad.mit.edu	37	17	74475819	74475819	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74475819G>A	uc002jrq.1	-	4	648	c.355C>T	c.(355-357)CGC>TGC	p.R119C	RHBDF2_uc002jrp.1_Missense_Mutation_p.R90C|RHBDF2_uc002jrr.1_5'UTR|RHBDF2_uc010wtf.1_Missense_Mutation_p.R90C|RHBDF2_uc002jrs.1_Missense_Mutation_p.R90C	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	119	Cytoplasmic (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						GCTCACTTGCGGATGCTCTGG	0.662													6	21					0	0	1	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74622450	74622451	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74622450_74622451CC>TT	uc002jsh.2	-	6	1509_1510	c.1335_1336GG>AA	c.(1333-1338)CTGGAA>CTAAAA	p.E446K	ST6GALNAC1_uc002jsi.2_Missense_Mutation_p.E314K|ST6GALNAC1_uc002jsj.2_Intron	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	446	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						CGGGTGCCTTCCAGGAAGTGCA	0.559													22	54					0	0	1	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625129	74625129	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74625129C>T	uc002jsh.2	-	2	970	c.796G>A	c.(796-798)GAA>AAA	p.E266K	ST6GALNAC1_uc002jsi.2_Missense_Mutation_p.E134K|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	266	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						CTGTATTTTTCCTCAAAATCC	0.577													48	99					0	0	1	0	0
JMJD6	23210	broad.mit.edu	37	17	74720088	74720088	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74720088G>A	uc002jso.2	-	3	895	c.571C>T	c.(571-573)CTG>TTG	p.L191L	JMJD6_uc002jsn.1_Silent_p.L191L|JMJD6_uc010dgz.2_Silent_p.L191L|C17orf95_uc002jsp.2_5'Flank|C17orf95_uc002jsq.2_5'Flank|C17orf95_uc002jsr.2_5'Flank|C17orf95_uc002jss.2_5'Flank|C17orf95_uc002jst.2_5'Flank|C17orf95_uc002jsu.2_5'Flank	NM_015167	NP_055982	Q6NYC1	JMJD6_HUMAN	jumonji domain containing 6 isoform 2	191	JmjC.				mRNA processing|peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine|regulation of nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|sprouting angiogenesis|transcription, DNA-dependent	nucleolus|nucleoplasm	histone demethylase activity (H3-R2 specific)|histone demethylase activity (H4-R3 specific)|identical protein binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptidyl-lysine 5-dioxygenase activity|single-stranded RNA binding			skin(2)|ovary(1)	3						CTGGTTCCCAGAGGGTCGATG	0.527													34	115					0	0	1	0	0
MFSD11	79157	broad.mit.edu	37	17	74772585	74772585	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74772585G>A	uc002jta.2	+	13	2120	c.1147G>A	c.(1147-1149)GAC>AAC	p.D383N	MFSD11_uc002jtb.2_Missense_Mutation_p.D383N|MFSD11_uc010dha.2_Missense_Mutation_p.D331N|MFSD11_uc002jtc.2_Missense_Mutation_p.D383N|MFSD11_uc002jtd.3_Missense_Mutation_p.D383N|MFSD11_uc010dhb.2_Missense_Mutation_p.D331N|MFSD11_uc002jte.2_Missense_Mutation_p.D383N	NM_024311	NP_077287	O43934	MFS11_HUMAN	major facilitator superfamily domain containing	383						integral to membrane				ovary(1)	1						GTATTCTGAAGACAGCGCCCC	0.453													48	169					0	0	1	0	0
MGAT5B	146664	broad.mit.edu	37	17	74901259	74901259	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:74901259C>T	uc002jti.2	+	6	835	c.732C>T	c.(730-732)TTC>TTT	p.F244F	MGAT5B_uc002jth.2_Silent_p.F233F	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	233	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						AGGCAGTTTTCCGAAGCAACC	0.637													9	19					0	0	1	0	0
SEC14L1	6397	broad.mit.edu	37	17	75210016	75210016	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:75210016C>T	uc002jto.2	+	17	2326	c.2059C>T	c.(2059-2061)CTG>TTG	p.L687L	SEC14L1_uc010dhc.2_Silent_p.L687L|SEC14L1_uc010wth.1_Silent_p.L687L|SEC14L1_uc002jtm.2_Silent_p.L687L|SEC14L1_uc010wti.1_Silent_p.L653L|SEC14L1_uc010wtj.1_3'UTR|SEC14L1_uc002jtr.2_3'UTR	NM_003003	NP_002994	Q92503	S14L1_HUMAN	SEC14 (S. cerevisiae)-like 1 isoform a	687					transport	Golgi apparatus|integral to membrane	binding			ovary(2)	2						CATGACGAGCCTGGAGTCCAG	0.667													13	148					0	0	1	0	0
SEPT9	10801	broad.mit.edu	37	17	75398191	75398191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:75398191C>T	uc002jts.3	+	3	253	c.127C>T	c.(127-129)CCA>TCA	p.P43S	SEPT9_uc010wtk.1_Missense_Mutation_p.P24S|SEPT9_uc002jtt.3_5'UTR|SEPT9_uc002jtu.3_Missense_Mutation_p.P25S|SEPT9_uc002jtv.2_Missense_Mutation_p.P36S|SEPT9_uc002jtw.2_5'UTR|SEPT9_uc002jtx.1_5'UTR|SEPT9_uc010wtl.1_5'Flank	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	43					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			CAACTCCACCCCACCCCGGAG	0.567													19	49					0	0	1	0	0
TNRC6C	57690	broad.mit.edu	37	17	76046247	76046247	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76046247C>T	uc002jud.2	+	4	1704	c.1104C>T	c.(1102-1104)GTC>GTT	p.V368V	TNRC6C_uc002juf.2_Silent_p.V368V|TNRC6C_uc002jue.2_Silent_p.V368V	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	368	Sufficient for interaction with argonaute family proteins.|Gly-rich.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			GTCCTAGTGTCACCAGCCAGA	0.527													19	61					0	0	1	0	0
TNRC6C	57690	broad.mit.edu	37	17	76089072	76089072	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76089072C>T	uc002jud.2	+	16	4629	c.4029C>T	c.(4027-4029)TCC>TCT	p.S1343S	TNRC6C_uc002juf.2_Silent_p.S1340S	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1343					gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			TTGATGACTCCTATGGCCGGT	0.498													13	36					0	0	1	0	0
TMC6	11322	broad.mit.edu	37	17	76118722	76118722	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76118722G>A	uc002juj.1	-	9	1317	c.1191C>T	c.(1189-1191)TCC>TCT	p.S397S	TMC6_uc002jui.1_Silent_p.S36S|TMC6_uc010dhf.1_Silent_p.S230S|TMC6_uc002juk.2_Silent_p.S397S|TMC6_uc010dhg.1_Silent_p.S397S|TMC6_uc002jul.1_Silent_p.S397S|TMC6_uc002jum.3_Silent_p.S188S|TMC6_uc002jun.3_Silent_p.S397S|TMC6_uc002juo.2_Silent_p.S170S	NM_007267	NP_009198	Q7Z403	TMC6_HUMAN	transmembrane channel-like 6	397	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			GCTGGAGGCGGGAGGCCCGCT	0.662									Epidermodysplasia_Verruciformis_Familial_Clustering_of				6	18					0	0	1	0	0
TMC8	147138	broad.mit.edu	37	17	76128477	76128477	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76128477C>T	uc002jup.2	+	4	718	c.336C>T	c.(334-336)TTC>TTT	p.F112F	TMC6_uc002jul.1_5'UTR|TMC8_uc010dhh.1_Missense_Mutation_p.P174S|TMC8_uc002juq.2_5'UTR|TMC8_uc010wtr.1_5'Flank	NM_152468	NP_689681	Q8IU68	TMC8_HUMAN	transmembrane channel-like 8	112	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)|OV - Ovarian serous cystadenocarcinoma(97;0.192)			ACTTCACCTTCCTCCGCTTCC	0.682									Epidermodysplasia_Verruciformis_Familial_Clustering_of				7	18					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76433779	76433779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76433779C>T	uc010dhp.1	-	19	3199	c.2977G>A	c.(2977-2979)GAG>AAG	p.E993K	DNAH17_uc002jvq.2_Missense_Mutation_p.E278K|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GTGGGGGGCTCGTTGGTGATC	0.657													17	29					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76437211	76437211	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76437211C>T	uc010dhp.1	-	17	2821	c.2599G>A	c.(2599-2601)GAG>AAG	p.E867K	DNAH17_uc002jvq.2_Missense_Mutation_p.E152K|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CTGCTCTCCTCGTAGGACTTA	0.557													16	29					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76440770	76440770	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76440770G>A	uc010dhp.1	-	16	2666	c.2444C>T	c.(2443-2445)CCC>CTC	p.P815L	DNAH17_uc002jvq.2_Missense_Mutation_p.P100L|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CCACTCCTTGGGGAAGATCTC	0.527													9	31					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76449531	76449531	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76449531C>T	uc010dhp.1	-	10	1645	c.1423G>A	c.(1423-1425)GAG>AAG	p.E475K	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			ATGGCCTGCTCGATGACATCC	0.607													7	42					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76450701	76450701	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76450701G>A	uc010dhp.1	-	9	1479	c.1257C>T	c.(1255-1257)CTC>CTT	p.L419L	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GGTCGCTGGGGAGGCCCTGGT	0.642													25	43					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76451897	76451897	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76451897C>T	uc010dhp.1	-	8	1221	c.999G>A	c.(997-999)TCG>TCA	p.S333S	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GGATGTTTTCCGATGCTAATC	0.557													8	35					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76454647	76454647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76454647C>T	uc010dhp.1	-	7	1199	c.977G>A	c.(976-978)AGG>AAG	p.R326K	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GAGCTGATACCTGTTCGCCAG	0.562													41	76					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76455287	76455287	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76455287G>A	uc010dhp.1	-	6	879	c.657C>T	c.(655-657)CCC>CCT	p.P219P	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TGCCTTGGTAGGGCCTAGCGA	0.388													54	158					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76502909	76502909	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76502909C>T	uc010wtu.1	-	4	748	c.571G>A	c.(571-573)GCT>ACT	p.A191T						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCTGCCAAAGCCTTTTCACAG	0.542													40	103					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76503739	76503739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76503739G>A	uc010wtu.1	-	2	437	c.260C>T	c.(259-261)TCC>TTC	p.S87F						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CAGGTACTTGGACATCATCAG	0.607													5	34					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76565478	76565478	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76565478C>T	uc002jvv.1	-	4	388	c.282G>A	c.(280-282)GTG>GTA	p.V94V						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GCTTCATGTTCACGCAGCAGA	0.522													7	12					0	0	1	0	0
CYTH1	9267	broad.mit.edu	37	17	76705812	76705812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:76705812G>A	uc002jvw.2	-	2	96	c.25C>T	c.(25-27)CCC>TCC	p.P9S	CYTH1_uc010wtw.1_5'UTR|CYTH1_uc010wtx.1_5'UTR	NM_017456	NP_059430	Q15438	CYH1_HUMAN	cytohesin 1 isoform 2	9					regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						AGGTCACTGGGAACTACAAAA	0.468													23	71					0	0	1	0	0
CBX8	57332	broad.mit.edu	37	17	77769234	77769234	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:77769234G>A	uc002jxd.1	-	5	463	c.370C>T	c.(370-372)CTT>TTT	p.L124F		NM_020649	NP_065700	Q9HC52	CBX8_HUMAN	chromobox homolog 8	124					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex	methylated histone residue binding				0			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			ATGTTTCGAAGGCCCTCCCGG	0.652													8	10					0	0	1	0	0
CBX4	8535	broad.mit.edu	37	17	77808752	77808752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:77808752G>A	uc002jxe.2	-	5	852	c.689C>T	c.(688-690)CCC>CTC	p.P230L		NM_003655	NP_003646	O00257	CBX4_HUMAN	chromobox homolog 4	230	Interaction with BMI1.				anti-apoptosis|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|PcG protein complex	enzyme binding|transcription corepressor activity			skin(2)	2			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			CATTCCGTTGGGGGGGCCCTT	0.642											OREG0024799	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	118					0	0	1	0	0
TBC1D16	125058	broad.mit.edu	37	17	77984429	77984429	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:77984429G>A	uc002jxj.2	-	3	425	c.309C>T	c.(307-309)TCC>TCT	p.S103S		NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	103						intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			TGCGAACGGGGGAGCTCTCGG	0.701													6	21					0	0	1	0	0
CCDC40	55036	broad.mit.edu	37	17	78032751	78032751	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78032751C>T	uc010dht.2	+	9	1439	c.1412C>T	c.(1411-1413)ACC>ATC	p.T471I	CCDC40_uc010wub.1_Intron|CCDC40_uc002jxm.3_Missense_Mutation_p.T254I	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	471					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GCTGAGGACACCCGGATTTTA	0.567													28	68					0	0	1	0	0
CCDC40	55036	broad.mit.edu	37	17	78069181	78069181	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78069181G>A	uc010dht.2	+	18	2979	c.2952G>A	c.(2950-2952)AAG>AAA	p.K984K	CCDC40_uc002jxm.3_Silent_p.K767K|CCDC40_uc002jxn.3_Silent_p.K380K	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	984					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TGGACAGGAAGGCGCTCACCC	0.627													22	55					0	0	1	0	0
CCDC40	55036	broad.mit.edu	37	17	78071053	78071053	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78071053G>A	uc010dht.2	+	19	3058	c.3031G>A	c.(3031-3033)GAG>AAG	p.E1011K	CCDC40_uc002jxm.3_Missense_Mutation_p.E794K|CCDC40_uc002jxn.3_Missense_Mutation_p.E407K	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	1011	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GGCCACCGATGAGTGCACCAA	0.572													20	80					0	0	1	0	0
CCDC40	55036	broad.mit.edu	37	17	78071109	78071109	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78071109C>T	uc010dht.2	+	19	3114	c.3087C>T	c.(3085-3087)TCC>TCT	p.S1029S	CCDC40_uc002jxm.3_Silent_p.S812S|CCDC40_uc002jxn.3_Silent_p.S425S	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	1029	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TGAGCAGCTCCCTCCTAGAGA	0.562													15	84					0	0	1	0	0
CCDC40	55036	broad.mit.edu	37	17	78071191	78071191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78071191C>T	uc010dht.2	+	19	3196	c.3169C>T	c.(3169-3171)CTC>TTC	p.L1057F	CCDC40_uc002jxm.3_Missense_Mutation_p.L840F|CCDC40_uc002jxn.3_Missense_Mutation_p.L453F	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	1057					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GCTTGGGGCCCTCAAACGACA	0.592													10	39					0	0	1	0	0
CCDC40	55036	broad.mit.edu	37	17	78073340	78073340	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78073340C>T	uc010dht.2	+	20	3222	c.3195C>T	c.(3193-3195)ATC>ATT	p.I1065I	CCDC40_uc002jxm.3_Silent_p.I848I|CCDC40_uc002jxn.3_Silent_p.I461I|GAA_uc002jxo.2_5'Flank|GAA_uc002jxp.2_5'Flank|GAA_uc002jxq.2_5'Flank	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	1065					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TTTCAGAGATCGTGGCCCTGC	0.562													21	59					0	0	1	0	0
GAA	2548	broad.mit.edu	37	17	78084546	78084546	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78084546C>T	uc002jxo.2	+	11	1640	c.1458C>T	c.(1456-1458)GCC>GCT	p.A486A	GAA_uc002jxp.2_Silent_p.A486A|GAA_uc002jxq.2_Silent_p.A486A	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	486					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	GGTCCACTGCCTTCCCCGACT	0.647													6	78					0	0	1	0	0
GAA	2548	broad.mit.edu	37	17	78084749	78084749	+	Missense_Mutation	SNP	G	A	A	rs121907937		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78084749G>A	uc002jxo.2	+	12	1743	c.1561G>A	c.(1561-1563)GAG>AAG	p.E521K	GAA_uc002jxp.2_Missense_Mutation_p.E521K|GAA_uc002jxq.2_Missense_Mutation_p.E521K	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	521		By similarity.	E -> K (in GSD2; severe).		cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	GGACATGAACGAGCCTTCCAA	0.632													7	59					0	0	1	0	0
SLC26A11	284129	broad.mit.edu	37	17	78210729	78210729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78210729C>T	uc002jyb.1	+	8	1008	c.739C>T	c.(739-741)CGC>TGC	p.R247C	SLC26A11_uc002jyc.1_Missense_Mutation_p.R247C|SLC26A11_uc002jyd.1_Missense_Mutation_p.R247C|SLC26A11_uc010dhv.1_Missense_Mutation_p.R247C	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	247	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			TCTCCTAGCTCGCAACGCCCT	0.632													71	166					0	0	1	0	0
SLC26A11	284129	broad.mit.edu	37	17	78223041	78223041	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78223041G>A	uc002jyb.1	+	16	1880	c.1611G>A	c.(1609-1611)CAG>CAA	p.Q537Q	SLC26A11_uc002jyc.1_Silent_p.Q537Q|SLC26A11_uc002jyd.1_Silent_p.Q537Q|SLC26A11_uc010dhv.1_Silent_p.Q537Q	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	537	Extracellular (Potential).|STAS.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			AGCTCCTCCAGGACTTCCAGA	0.652													10	32					0	0	1	0	0
RNF213	57674	broad.mit.edu	37	17	78320047	78320047	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78320047C>T	uc002jyh.1	+	4	2354	c.2131C>T	c.(2131-2133)CTC>TTC	p.L711F		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			CTTTGTCAGCCTCAGGGACGT	0.537													25	77					0	0	1	0	0
RNF213	57674	broad.mit.edu	37	17	78321852	78321852	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78321852C>T	uc002jyh.1	+	4	4159	c.3936C>T	c.(3934-3936)CCC>CCT	p.P1312P		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GGCAGGGTCCCCGGGCCTTGA	0.617													17	49					0	0	1	0	0
FLJ35220	284131	broad.mit.edu	37	17	78399335	78399335	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78399335C>T	uc002jym.1	+	7	657	c.629C>T	c.(628-630)TCC>TTC	p.S210F	FLJ35220_uc002jyk.2_Missense_Mutation_p.S165F|FLJ35220_uc002jyl.1_Missense_Mutation_p.S165F|FLJ35220_uc002jyn.2_Missense_Mutation_p.S16F	NM_173627	NP_775898	Q8N8Q3	ENDOV_HUMAN	hypothetical protein LOC284131 isoform 1	210					DNA repair		endodeoxyribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			CTCTACATCTCCGTGGGCCAC	0.692								Direct_reversal_of_damage|Editing_and_processing_nucleases					5	6					0	0	1	0	0
NPTX1	4884	broad.mit.edu	37	17	78445594	78445594	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:78445594C>T	uc002jyp.1	-	4	1173	c.1015G>A	c.(1015-1017)GAG>AAG	p.E339K		NM_002522	NP_002513	Q15818	NPTX1_HUMAN	neuronal pentraxin I precursor	339	Pentaxin.				central nervous system development|synaptic transmission|transport	transport vesicle	metal ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			GCCAAGTTCTCGCCACTGCCA	0.632													23	49					0	0	1	0	0
AATK	9625	broad.mit.edu	37	17	79108233	79108233	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:79108233G>A	uc010dia.2	-	2	204	c.124C>T	c.(124-126)CTC>TTC	p.L42F	MIR1250_hsa-mir-1250|MI0006385_5'Flank	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	42	Helical; (Potential).					integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			ACGGCGAAGAGCCCGGAGAAA	0.662													12	25					0	0	1	0	0
AZI1	22994	broad.mit.edu	37	17	79165002	79165002	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:79165002G>A	uc002jzp.1	-	22	2965	c.2765C>T	c.(2764-2766)GCC>GTC	p.A922V	AZI1_uc002jzm.1_Missense_Mutation_p.A354V|AZI1_uc002jzn.1_Missense_Mutation_p.A919V|AZI1_uc002jzo.1_Missense_Mutation_p.A883V|AZI1_uc010wum.1_Missense_Mutation_p.A886V|AZI1_uc002jzq.2_Missense_Mutation_p.A70V	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	922					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CCGGCTCTCGGCAGCCTTCTC	0.647													36	77					0	0	1	0	0
AZI1	22994	broad.mit.edu	37	17	79165041	79165041	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:79165041G>A	uc002jzp.1	-	22	2926	c.2726C>T	c.(2725-2727)GCC>GTC	p.A909V	AZI1_uc002jzm.1_Missense_Mutation_p.A341V|AZI1_uc002jzn.1_Missense_Mutation_p.A906V|AZI1_uc002jzo.1_Missense_Mutation_p.A870V|AZI1_uc010wum.1_Missense_Mutation_p.A873V|AZI1_uc002jzq.2_Missense_Mutation_p.A57V	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	909					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CGCCATGTCGGCCTCCAGCCG	0.652													37	100					0	0	1	0	0
AZI1	22994	broad.mit.edu	37	17	79193782	79193782	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:79193782G>A	uc002jzp.1	-	2	275	c.75C>T	c.(73-75)CTC>CTT	p.L25L	AZI1_uc002jzn.1_Silent_p.L25L|AZI1_uc002jzo.1_Silent_p.L25L|AZI1_uc010wum.1_Silent_p.L25L	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	25					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CAGGCGGAGGGAGACCTGTCA	0.677													23	65					0	0	1	0	0
BAHCC1	57597	broad.mit.edu	37	17	79414146	79414146	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:79414146C>T	uc002kaf.2	+	9	3248	c.3248C>T	c.(3247-3249)CCT>CTT	p.P1083L	BAHCC1_uc002kae.2_Missense_Mutation_p.P313L	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	1083							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CTCGAGGACCCTGAAACTATG	0.662													24	61					0	0	1	0	0
BAHCC1	57597	broad.mit.edu	37	17	79428193	79428193	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:79428193C>T	uc002kaf.2	+	24	6504	c.6504C>T	c.(6502-6504)TTC>TTT	p.F2168F	BAHCC1_uc002kae.2_Silent_p.F1398F	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	2168							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			ACGCGCCCTTCGTCGGGGGGA	0.721													4	12					0	0	1	0	0
FSCN2	25794	broad.mit.edu	37	17	79495959	79495959	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:79495959C>T	uc010wup.1	+	1	543	c.402C>T	c.(400-402)CAC>CAT	p.H134H	FSCN2_uc010wuo.1_Silent_p.H134H	NM_012418	NP_036550	O14926	FSCN2_HUMAN	fascin 2 isoform 1	134					actin filament bundle assembly|anatomical structure morphogenesis|visual perception	actin cytoskeleton|cytoplasm|stereocilium	actin filament binding|protein binding, bridging				0	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			GGACCGTGCACCTGGCCATCC	0.711													3	8					0	0	1	0	0
C17orf70	80233	broad.mit.edu	37	17	79514186	79514186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:79514186G>A	uc002kaq.2	-	5	1977	c.1922C>T	c.(1921-1923)CCC>CTC	p.P641L	C17orf70_uc002kao.1_Missense_Mutation_p.P290L|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Missense_Mutation_p.P490L	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	641					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			CCTGCTCAGGGGCAGGCAAAC	0.692													21	88					0	0	1	0	0
SLC25A10	1468	broad.mit.edu	37	17	79674064	79674064	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:79674064C>T	uc010wut.1	+	4	599	c.474C>T	c.(472-474)CTC>CTT	p.L158L	MRPL12_uc002kbh.1_Silent_p.L158L	NM_012140	NP_036272	Q9UBX3	DIC_HUMAN	solute carrier family 25 (mitochondrial carrier;	Error:Variant_position_missing_in_Q9UBX3_after_alignment					gluconeogenesis|mitochondrial transport	integral to membrane|mitochondrial inner membrane|nucleus	protein binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0117)|OV - Ovarian serous cystadenocarcinoma(97;0.0955)		Succinic acid(DB00139)	GCATCAACCTCGTCCAGGTCT	0.582													20	43					0	0	1	0	0
FASN	2194	broad.mit.edu	37	17	80044225	80044225	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80044225G>A	uc002kdu.2	-	22	3754	c.3637C>T	c.(3637-3639)CCT>TCT	p.P1213S	FASN_uc002kdw.1_Missense_Mutation_p.P429S	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1213					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	CTGAGCAGAGGGTCCTCTGGC	0.667													7	19					0	0	1	0	0
FASN	2194	broad.mit.edu	37	17	80044325	80044325	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80044325G>A	uc002kdu.2	-	22	3654	c.3537C>T	c.(3535-3537)CCC>CCT	p.P1179P	FASN_uc002kdw.1_Silent_p.P395P	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1179					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	ACAACAGCCGGGGCAGTTCCT	0.677													17	31					0	0	1	0	0
FASN	2194	broad.mit.edu	37	17	80045076	80045076	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80045076G>A	uc002kdu.2	-	21	3394	c.3277C>T	c.(3277-3279)CAC>TAC	p.H1093Y	FASN_uc002kdw.1_Missense_Mutation_p.H309Y	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1093					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	CCGGAGATGTGGACGCCTCCG	0.667													4	17					0	0	1	0	0
FASN	2194	broad.mit.edu	37	17	80048890	80048890	+	Silent	SNP	G	A	A	rs145311183		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80048890G>A	uc002kdu.2	-	10	1665	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F	FASN_uc002kdw.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	516	Acyl and malonyl transferases (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	TGGAATCTCGGAAGCGGTCCA	0.622													19	57					0	0	1	0	0
SLC16A3	9123	broad.mit.edu	37	17	80193902	80193902	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80193902G>A	uc002kea.2	+	2	157	c.18G>A	c.(16-18)GTG>GTA	p.V6V	SLC16A3_uc002kee.2_Silent_p.V6V|SLC16A3_uc002keb.2_Silent_p.V6V|SLC16A3_uc002kec.2_Silent_p.V6V|SLC16A3_uc002ked.2_Silent_p.V6V	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	6	Cytoplasmic (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	GGGCCGTGGTGGACGAGGGCC	0.672													12	21					0	0	1	0	0
SLC16A3	9123	broad.mit.edu	37	17	80195264	80195264	+	Silent	SNP	G	A	A	rs5822441		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80195264G>A	uc002kea.2	+	4	757	c.618G>A	c.(616-618)CCG>CCA	p.P206P	SLC16A3_uc002kee.2_Silent_p.P206P|SLC16A3_uc002keb.2_Silent_p.P206P|SLC16A3_uc002kec.2_Silent_p.P206P|SLC16A3_uc002ked.2_Silent_p.P206P	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	206	Cytoplasmic (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	CGGCCCAGCCGGGCTCGGGGC	0.721													3	6					0	0	1	0	0
SLC16A3	9123	broad.mit.edu	37	17	80195756	80195756	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80195756G>A	uc002kea.2	+	4	1249	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	SLC16A3_uc002kee.2_Silent_p.G370G|SLC16A3_uc002keb.2_Silent_p.G370G|SLC16A3_uc002kec.2_Silent_p.G370G|SLC16A3_uc002ked.2_Silent_p.G370G	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	370	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	TGCTCGTCGGGCCCCCTTCGG	0.701													14	25					0	0	1	0	0
CSNK1D	1453	broad.mit.edu	37	17	80209291	80209291	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80209291G>A	uc002kej.2	-	6	1165	c.849C>T	c.(847-849)TCC>TCT	p.S283S	SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Silent_p.S283S|CSNK1D_uc002kei.2_Silent_p.S283S|CSNK1D_uc010wvj.1_Silent_p.S80S|CSNK1D_uc010dil.2_RNA|CSNK1D_uc002keh.2_Silent_p.S148S|CSNK1D_uc010dim.1_Silent_p.S80S	NM_001893	NP_001884	P48730	KC1D_HUMAN	casein kinase 1, delta isoform 1	283					circadian regulation of gene expression|DNA repair|G2/M transition of mitotic cell cycle|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|regulation of circadian rhythm|Wnt receptor signaling pathway	centrosome|cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			breast(2)	2	Breast(20;0.00136)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0155)			CGTAGTCATAGGAGAAGCCCT	0.532													12	40					0	0	1	0	0
SECTM1	6398	broad.mit.edu	37	17	80282490	80282490	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80282490C>T	uc002keo.2	-	3	769	c.371G>A	c.(370-372)AGA>AAA	p.R124K	SECTM1_uc002ken.2_Missense_Mutation_p.R124K|SECTM1_uc002kep.2_Missense_Mutation_p.R124K	NM_003004	NP_002995	Q8WVN6	SCTM1_HUMAN	secreted and transmembrane 1 precursor	124	Extracellular (Potential).				immune response|mesoderm development|positive regulation of I-kappaB kinase/NF-kappaB cascade	extracellular space|Golgi apparatus|integral to membrane|plasma membrane	cytokine activity|signal transducer activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00928)|BRCA - Breast invasive adenocarcinoma(99;0.0833)			TCTGTTATTTCTCTGGTGTCC	0.388													20	54					0	0	1	0	0
SECTM1	6398	broad.mit.edu	37	17	80285043	80285043	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80285043G>A	uc002keo.2	-	2	472	c.74C>T	c.(73-75)TCC>TTC	p.S25F	SECTM1_uc002ken.2_Missense_Mutation_p.S25F|SECTM1_uc002kep.2_Missense_Mutation_p.S25F	NM_003004	NP_002995	Q8WVN6	SCTM1_HUMAN	secreted and transmembrane 1 precursor	25					immune response|mesoderm development|positive regulation of I-kappaB kinase/NF-kappaB cascade	extracellular space|Golgi apparatus|integral to membrane|plasma membrane	cytokine activity|signal transducer activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00928)|BRCA - Breast invasive adenocarcinoma(99;0.0833)			AGCACTCAAGGAGGCAGCCAA	0.667													5	16					0	0	1	0	0
TEX19	400629	broad.mit.edu	37	17	80320289	80320289	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80320289G>A	uc002keq.2	+	2	572	c.263G>A	c.(262-264)GGA>GAA	p.G88E		NM_207459	NP_997342	Q8NA77	TEX19_HUMAN	testis expressed 19	88						nucleus					0						CAGAGCCCAGGACAGCCTGTG	0.647													12	58					0	0	1	0	0
C17orf101	79701	broad.mit.edu	37	17	80361910	80361910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80361910G>A	uc002keu.1	-	7	703	c.602C>T	c.(601-603)TCC>TTC	p.S201F	C17orf101_uc002ket.1_Missense_Mutation_p.S201F|C17orf101_uc010dip.1_RNA	NM_024648	NP_078924	Q6PK18	CQ101_HUMAN	hypothetical protein LOC79701 isoform 1	201	Lumenal (Potential).					integral to membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)	1						ATGCAGCGAGGATGCGCTGAT	0.627													4	8					0	0	1	0	0
WDR45L	56270	broad.mit.edu	37	17	80579640	80579641	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80579640_80579641GG>AA	uc002kfq.2	-	6	657_658	c.462_463CC>TT	c.(460-465)TCCCTC>TCTTTC	p.L155F	WDR45L_uc002kfr.2_RNA	NM_019613	NP_062559	Q5MNZ6	WIPI3_HUMAN	WDR45-like	155					autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1	Breast(20;0.00106)|all_neural(118;0.0952)	all_cancers(8;0.101)|all_epithelial(8;0.198)	BRCA - Breast invasive adenocarcinoma(99;0.0262)|OV - Ovarian serous cystadenocarcinoma(97;0.0835)			AAGGCCAGGAGGGAGTTGTTAC	0.569													11	35					0	0	1	0	0
B3GNTL1	146712	broad.mit.edu	37	17	80918997	80918997	+	Missense_Mutation	SNP	G	A	A	rs138531570	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr17:80918997G>A	uc002kgg.1	-	8	675	c.661C>T	c.(661-663)CGC>TGC	p.R221C	B3GNTL1_uc002kgf.1_Missense_Mutation_p.R110C|B3GNTL1_uc002kge.1_RNA	NM_001009905	NP_001009905	Q67FW5	B3GNL_HUMAN	UDP-GlcNAc:betaGal	221							transferase activity, transferring glycosyl groups			ovary(1)|pancreas(1)	2	Breast(20;0.000443)|all_neural(118;0.0779)	all_cancers(8;0.0396)|all_epithelial(8;0.0556)	BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			TGGTCCACGCGGATGACGCCG	0.697													6	15					0	0	1	0	0
Unknown	0	broad.mit.edu	37	18	118427	118427	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:118427C>T	uc002kke.2	+	4		c.861C>T								Homo sapiens Rho-associated, coiled-coil containing protein kinase 1, mRNA (cDNA clone IMAGE:5269982), complete cds.																		TTCGTGCTTCCCCTTGAACGC	0.388													23	241					0	0	1	0	0
COLEC12	81035	broad.mit.edu	37	18	346892	346892	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:346892G>A	uc002kkm.2	-	5	945	c.730C>T	c.(730-732)CTG>TTG	p.L244L		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	244	Potential.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				ACCTGCTGCAGATTTTGAAAG	0.527													28	85					0	0	1	0	0
COLEC12	81035	broad.mit.edu	37	18	357510	357510	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:357510C>T	uc002kkm.2	-	3	286	c.71G>A	c.(70-72)GGA>GAA	p.G24E		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	24	Cytoplasmic (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				ACATTGTGTTCCTTCCTGAAT	0.303													17	59					0	0	1	0	0
COLEC12	81035	broad.mit.edu	37	18	480750	480750	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:480750G>A	uc002kkm.2	-	2	230	c.15C>T	c.(13-15)TTC>TTT	p.F5F		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	5	Cytoplasmic (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				CCTCCTCTGCGAAGTCGTCTG	0.527													23	81					0	0	1	0	0
CETN1	1068	broad.mit.edu	37	18	580498	580498	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:580498G>A	uc002kko.1	+	1	132	c.90G>A	c.(88-90)AAG>AAA	p.K30K		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	30	EF-hand 1.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGGATCAGAAGCAAGAAGTTC	0.592													16	29					0	0	1	0	0
CETN1	1068	broad.mit.edu	37	18	580874	580874	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:580874G>A	uc002kko.1	+	1	508	c.466G>A	c.(466-468)GAA>AAA	p.E156K		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	156	2 (Probable).|EF-hand 4.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						TGGGGACGGCGAAGTGAACGA	0.537													40	22					0	0	1	0	0
CETN1	1068	broad.mit.edu	37	18	580894	580894	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:580894C>T	uc002kko.1	+	1	528	c.486C>T	c.(484-486)TTC>TTT	p.F162F		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	162	EF-hand 4.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGGAGGAGTTCCTTCGGATCA	0.532													20	45					0	0	1	0	0
CLUL1	27098	broad.mit.edu	37	18	641370	641370	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:641370G>A	uc002kkp.2	+	7	1183	c.1038G>A	c.(1036-1038)GCG>GCA	p.A346A	CLUL1_uc010wys.1_Silent_p.A398A|CLUL1_uc002kkq.2_Silent_p.A346A	NM_014410	NP_055225	Q15846	CLUL1_HUMAN	clusterin-like 1 (retinal) precursor	346					cell death	extracellular region				ovary(2)	2						TAGACGAGGCGATCAGGTTGG	0.493													21	81					0	0	1	0	0
ADCYAP1	116	broad.mit.edu	37	18	909582	909582	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:909582G>A	uc010dkg.2	+	5	596	c.477G>A	c.(475-477)GGG>GGA	p.G159G	ADCYAP1_uc010dkh.2_Silent_p.G159G	NM_001099733	NP_001093203	P18509	PACA_HUMAN	adenylate cyclase activating polypeptide	159					activation of adenylate cyclase activity|cell-cell signaling|female pregnancy|nerve growth factor receptor signaling pathway|regulation of G-protein coupled receptor protein signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|peptide hormone receptor binding				0						CCGTCCTAGGGAAGAGGTATA	0.512													40	199					0	0	1	0	0
METTL4	64863	broad.mit.edu	37	18	2566965	2566965	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:2566965C>T	uc002klh.3	-	2	1031	c.251G>A	c.(250-252)CGA>CAA	p.R84Q		NM_022840	NP_073751	Q8N3J2	METL4_HUMAN	methyltransferase like 4	84					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		methyltransferase activity|nucleic acid binding			kidney(1)|skin(1)	2						AACAAATTTTCGTGTGAACAT	0.393													31	96					0	0	1	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891892	2891892	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:2891892G>A	uc002kln.2	+	4	1926	c.1767G>A	c.(1765-1767)ACG>ACA	p.T589T		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	589	Potential.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		TCAACGACACGATGCACAGGA	0.448													23	34					0	0	1	0	0
LPIN2	9663	broad.mit.edu	37	18	2940692	2940692	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:2940692G>A	uc002klo.2	-	5	848	c.609C>T	c.(607-609)TCC>TCT	p.S203S		NM_014646	NP_055461	Q92539	LPIN2_HUMAN	lipin 2	203					fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			ovary(1)|skin(1)	2				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		CTTCTTTCAAGGAAGCATTTG	0.413													14	38					0	0	1	0	0
MYOM1	8736	broad.mit.edu	37	18	3116432	3116432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3116432C>T	uc002klp.2	-	21	3534	c.3200G>A	c.(3199-3201)CGG>CAG	p.R1067Q	MYOM1_uc002klq.2_Missense_Mutation_p.R971Q	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1067	Fibronectin type-III 5.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GACCGGAGTCCGCCCGGAGTG	0.552													10	21					0	0	1	0	0
MYOM1	8736	broad.mit.edu	37	18	3215001	3215001	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3215001G>A	uc002klp.2	-	2	555	c.221C>T	c.(220-222)TCG>TTG	p.S74L	MYOM1_uc002klq.2_Missense_Mutation_p.S74L	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	74						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GGCGTGCTGCGAGGCCTGCTG	0.682													13	28					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3508653	3508653	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3508653C>T	uc002kmf.2	-	8	2553	c.2486G>A	c.(2485-2487)GGA>GAA	p.G829E	DLGAP1_uc010wyz.1_Missense_Mutation_p.G829E|DLGAP1_uc002kme.1_Missense_Mutation_p.G527E|DLGAP1_uc010dkn.2_Missense_Mutation_p.G537E|DLGAP1_uc010wyw.1_Missense_Mutation_p.G535E|DLGAP1_uc010wyx.1_Missense_Mutation_p.G551E|DLGAP1_uc010wyy.1_Missense_Mutation_p.G513E|DLGAP1_uc002kmg.2_Missense_Mutation_p.G527E	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	829					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				TCGGATTTTTCCTAGAACTGG	0.413													12	23					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3581927	3581927	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3581927C>T	uc002kmf.2	-	5	1978	c.1911G>A	c.(1909-1911)GAG>GAA	p.E637E	DLGAP1_uc010wyz.1_Silent_p.E637E|DLGAP1_uc002kme.1_Silent_p.E335E|DLGAP1_uc010dkn.2_Silent_p.E345E|DLGAP1_uc010wyw.1_Silent_p.E343E|DLGAP1_uc010wyx.1_Silent_p.E359E|DLGAP1_uc010wyy.1_Silent_p.E321E|DLGAP1_uc002kmg.2_Silent_p.E335E	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	637					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				TCTTCCTGTCCTCCgtggtga	0.353													43	100					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3729188	3729188	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3729188G>A	uc002kmf.2	-	4	1605	c.1538C>T	c.(1537-1539)TCG>TTG	p.S513L	DLGAP1_uc010wyz.1_Missense_Mutation_p.S513L|DLGAP1_uc002kme.1_Missense_Mutation_p.S211L|DLGAP1_uc010dkn.2_Missense_Mutation_p.S211L|DLGAP1_uc010wyw.1_Missense_Mutation_p.S219L|DLGAP1_uc010wyx.1_Missense_Mutation_p.S225L|DLGAP1_uc010wyy.1_Missense_Mutation_p.S225L|DLGAP1_uc002kmg.2_Missense_Mutation_p.S211L|DLGAP1_uc002kmk.2_Missense_Mutation_p.S513L	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	513					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CGGCGAGGACGACCTCAGGGA	0.682													12	42					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3729195	3729195	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3729195G>T	uc002kmf.2	-	4	1598	c.1531C>A	c.(1531-1533)CTG>ATG	p.L511M	DLGAP1_uc010wyz.1_Missense_Mutation_p.L511M|DLGAP1_uc002kme.1_Missense_Mutation_p.L209M|DLGAP1_uc010dkn.2_Missense_Mutation_p.L209M|DLGAP1_uc010wyw.1_Missense_Mutation_p.L217M|DLGAP1_uc010wyx.1_Missense_Mutation_p.L223M|DLGAP1_uc010wyy.1_Missense_Mutation_p.L223M|DLGAP1_uc002kmg.2_Missense_Mutation_p.L209M|DLGAP1_uc002kmk.2_Missense_Mutation_p.L511M	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	511					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				GACGACCTCAGGGACACGCAC	0.687													6	41					0.0215528	0.0215551	1	1	0
DLGAP1	9229	broad.mit.edu	37	18	3879171	3879171	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3879171C>T	uc002kmf.2	-	1	965	c.898G>A	c.(898-900)GAC>AAC	p.D300N	DLGAP1_uc010wyz.1_Missense_Mutation_p.D300N|DLGAP1_uc002kmk.2_Missense_Mutation_p.D300N|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	300					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				ATGGCCTGGTCCATGTTCACC	0.592													15	54					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3879303	3879303	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3879303C>T	uc002kmf.2	-	1	833	c.766G>A	c.(766-768)GAC>AAC	p.D256N	DLGAP1_uc010wyz.1_Missense_Mutation_p.D256N|DLGAP1_uc002kmk.2_Missense_Mutation_p.D256N|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	256					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CACTTGACGTCGTTGTTGCTC	0.672													17	51					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3879424	3879424	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3879424G>A	uc002kmf.2	-	1	712	c.645C>T	c.(643-645)TAC>TAT	p.Y215Y	DLGAP1_uc010wyz.1_Silent_p.Y215Y|DLGAP1_uc002kmk.2_Silent_p.Y215Y|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	215					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				AGGGGGCGTGGTAGATGCACA	0.677													52	140					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3879555	3879555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:3879555C>T	uc002kmf.2	-	1	581	c.514G>A	c.(514-516)GAG>AAG	p.E172K	DLGAP1_uc010wyz.1_Missense_Mutation_p.E172K|DLGAP1_uc002kmk.2_Missense_Mutation_p.E172K|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	172					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				GCCTGCGCCTCGTCAGGGCTG	0.711													36	108					0	0	1	0	0
EPB41L3	23136	broad.mit.edu	37	18	5434069	5434069	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:5434069G>A	uc002kmt.1	-	7	743	c.657C>T	c.(655-657)CCC>CCT	p.P219P	EPB41L3_uc010wzh.1_Silent_p.P219P|EPB41L3_uc002kmu.1_Silent_p.P219P|EPB41L3_uc010dkq.1_Silent_p.P110P|EPB41L3_uc010dks.1_Silent_p.P241P|EPB41L3_uc002kmv.1_Silent_p.P110P	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	219	FERM.				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						CAAAGGAGCAGGGCAGCCTTC	0.527													23	94					0	0	1	0	0
EPB41L3	23136	broad.mit.edu	37	18	5489039	5489039	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:5489039G>A	uc002kmt.1	-	2	230	c.144C>T	c.(142-144)TTC>TTT	p.F48F	EPB41L3_uc010wzh.1_Silent_p.F48F|EPB41L3_uc002kmu.1_Silent_p.F48F|EPB41L3_uc010dkq.1_5'UTR|EPB41L3_uc010dks.1_Silent_p.F70F|EPB41L3_uc002kmv.1_5'UTR	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	48					cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						CAGCGGCGGCGAACTGCTCCA	0.552													10	30					0	0	1	0	0
TMEM200C	645369	broad.mit.edu	37	18	5890243	5890243	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:5890243G>A	uc002kmx.1	-	1	1861	c.1820C>T	c.(1819-1821)TCT>TTT	p.S607F		NM_001080209	NP_001073678	A6NKL6	T200C_HUMAN	transmembrane protein 200C	607						integral to membrane					0						TATGGCATGAGACCTGGAAAT	0.547													38	100					0	0	1	0	0
TMEM200C	645369	broad.mit.edu	37	18	5891498	5891498	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:5891498C>T	uc002kmx.1	-	1	606	c.565G>A	c.(565-567)GAG>AAG	p.E189K		NM_001080209	NP_001073678	A6NKL6	T200C_HUMAN	transmembrane protein 200C	189						integral to membrane					0						TCCCGGTTCTCGTGGAGGACC	0.562													7	14					0	0	1	0	0
TMEM200C	645369	broad.mit.edu	37	18	5891650	5891650	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:5891650C>T	uc002kmx.1	-	1	454	c.413G>A	c.(412-414)CGA>CAA	p.R138Q		NM_001080209	NP_001073678	A6NKL6	T200C_HUMAN	transmembrane protein 200C	138						integral to membrane					0						GGAGGCGGCTCGTGCTGGAGG	0.652													12	50					0	0	1	0	0
TMEM200C	645369	broad.mit.edu	37	18	5891895	5891895	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:5891895G>A	uc002kmx.1	-	1	209	c.168C>T	c.(166-168)GCC>GCT	p.A56A		NM_001080209	NP_001073678	A6NKL6	T200C_HUMAN	transmembrane protein 200C	56	Helical; (Potential).					integral to membrane					0						TCCCACAGAGGGCGATGAGCC	0.622													9	30					0	0	1	0	0
TMEM200C	645369	broad.mit.edu	37	18	5892017	5892017	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:5892017C>T	uc002kmx.1	-	1	87	c.46G>A	c.(46-48)GAT>AAT	p.D16N		NM_001080209	NP_001073678	A6NKL6	T200C_HUMAN	transmembrane protein 200C	16						integral to membrane					0						CGGAGTGGATCCTGCTTTCTG	0.612													10	28					0	0	1	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6239766	6239766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6239766C>T	uc002kmz.3	-	9	818	c.658G>A	c.(658-660)GAT>AAT	p.D220N	L3MBTL4_uc010dkt.2_Missense_Mutation_p.D220N|L3MBTL4_uc002kmy.3_Missense_Mutation_p.D58N	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	220	MBT 2.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				AGTAAGCGATCTTCAACAATA	0.403													13	110					0	0	1	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6239815	6239815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6239815C>T	uc002kmz.3	-	9	769	c.609G>A	c.(607-609)AGG>AGA	p.R203R	L3MBTL4_uc010dkt.2_Silent_p.R203R|L3MBTL4_uc002kmy.3_Silent_p.R41R	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	203	MBT 2.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				AAGGGTTCTTCCTGTCCACGG	0.463													24	68					0	0	1	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6243299	6243300	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6243299_6243300GG>AA	uc002kmz.3	-	7	613_614	c.453_454CC>TT	c.(451-456)ATCCCT>ATTTCT	p.P152S	L3MBTL4_uc010dkt.2_Missense_Mutation_p.P152S|L3MBTL4_uc002kmy.3_5'Flank	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	152	MBT 1.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				TTACCCTTAGGGATGTGCAGTT	0.366													25	89					0	0	1	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6244522	6244522	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6244522G>A	uc002kmz.3	-	6	445	c.285C>T	c.(283-285)CCC>CCT	p.P95P	L3MBTL4_uc010dkt.2_Silent_p.P95P	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	95	MBT 1.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				ATGGATGTCGGGGATCAATGC	0.418													68	149					0	0	1	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6882289	6882289	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6882289C>T	uc010wzi.1	+	10	1151	c.913C>T	c.(913-915)CTA>TTA	p.L305L	ARHGAP28_uc002knc.2_Silent_p.L430L|ARHGAP28_uc002knd.2_Silent_p.L323L|ARHGAP28_uc002kne.2_Silent_p.L323L|ARHGAP28_uc002knf.2_Silent_p.L314L			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	305					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				CTTCATCAGTCTAATGGAAAG	0.403													19	57					0	0	1	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6890533	6890533	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6890533C>T	uc010wzi.1	+	13	1546	c.1308C>T	c.(1306-1308)CTC>CTT	p.L436L	ARHGAP28_uc002knc.2_Silent_p.L561L|ARHGAP28_uc002knd.2_Silent_p.L454L|ARHGAP28_uc002kne.2_Silent_p.L454L|ARHGAP28_uc002knf.2_Silent_p.L445L			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	436					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				GGAAGACCCTCGAGCGGGAGG	0.473													9	26					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6943310	6943310	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6943310G>A	uc002knm.2	-	62	9030	c.8936C>T	c.(8935-8937)ACT>ATT	p.T2979I	LAMA1_uc002knk.2_Missense_Mutation_p.T309I|LAMA1_uc002knl.2_Missense_Mutation_p.T432I|LAMA1_uc010wzj.1_Missense_Mutation_p.T2455I	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2979	Laminin G-like 5.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCTTGAAGAGTGTGCCATTT	0.493													37	126					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6947245	6947245	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6947245G>A	uc002knm.2	-	61	8855	c.8761C>T	c.(8761-8763)CGA>TGA	p.R2921*	LAMA1_uc002knk.2_Nonsense_Mutation_p.R251*|LAMA1_uc002knl.2_Nonsense_Mutation_p.R374*|LAMA1_uc010wzj.1_Nonsense_Mutation_p.R2397*	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2921	Laminin G-like 5.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAGGAGGTTCGAAACTCCAGT	0.562													23	57					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6955364	6955364	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6955364G>A	uc002knm.2	-	57	8289	c.8195C>T	c.(8194-8196)GCT>GTT	p.A2732V	LAMA1_uc002knk.2_Missense_Mutation_p.A62V|LAMA1_uc002knl.2_Missense_Mutation_p.A185V|LAMA1_uc010wzj.1_Missense_Mutation_p.A2208V	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2732	Laminin G-like 4.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTTTCTGACAGCCGACTGATT	0.478													4	28					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6965357	6965357	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6965357G>A	uc002knm.2	-	50	7219	c.7125C>T	c.(7123-7125)ACC>ACT	p.T2375T	LAMA1_uc002knl.2_5'UTR|LAMA1_uc010wzj.1_Silent_p.T1851T	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2375	Laminin G-like 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGTCAAAAGGGTAATGGGTC	0.463													40	93					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6985585	6985585	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6985585C>T	uc002knm.2	-	38	5531	c.5437G>A	c.(5437-5439)GGA>AGA	p.G1813R	LAMA1_uc010wzj.1_Missense_Mutation_p.G1289R	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1813	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AATCCTCTTCCTTGGACAATG	0.418													23	50					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6999962	6999962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:6999962C>T	uc002knm.2	-	31	4511	c.4417G>A	c.(4417-4419)GAT>AAT	p.D1473N	LAMA1_uc010wzj.1_Missense_Mutation_p.D949N	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1473	Laminin EGF-like 16.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAACGGAAATCGTGGTCCCCT	0.423													19	41					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	7023190	7023190	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:7023190C>T	uc002knm.2	-	19	2768	c.2674G>A	c.(2674-2676)GAC>AAC	p.D892N	LAMA1_uc010wzj.1_Missense_Mutation_p.D368N	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	892	Laminin EGF-like 8.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTCACAGCGTCCCCATAGAAC	0.567													10	22					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	7042193	7042193	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:7042193G>A	uc002knm.2	-	9	1306	c.1212C>T	c.(1210-1212)TCC>TCT	p.S404S	LAMA1_uc010wzj.1_5'UTR	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	404	Laminin EGF-like 3.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAGAACTGAGGGACCCCACAG	0.448													10	30					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	7050889	7050889	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:7050889C>T	uc002knm.2	-	4	486	c.392G>A	c.(391-393)CGA>CAA	p.R131Q	LAMA1_uc010wzj.1_5'UTR	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	131	Laminin N-terminal.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTTTCCAGGTCGAGGGGCATT	0.423													17	40					0	0	1	0	0
LRRC30	339291	broad.mit.edu	37	18	7231201	7231201	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:7231201G>A	uc010wzk.1	+	1	65	c.65G>A	c.(64-66)GGG>GAG	p.G22E		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	22										ovary(1)|liver(1)	2						CTGTTCACGGGGAGGAGACAG	0.617													10	79					0	0	1	0	0
LRRC30	339291	broad.mit.edu	37	18	7231889	7231889	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:7231889C>T	uc010wzk.1	+	1	753	c.753C>T	c.(751-753)CTC>CTT	p.L251L		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	251	LRR 8.									ovary(1)|liver(1)	2						CGAGCGAACTCCACCTGCTGT	0.572													40	97					0	0	1	0	0
LRRC30	339291	broad.mit.edu	37	18	7231972	7231972	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:7231972C>T	uc010wzk.1	+	1	836	c.836C>T	c.(835-837)CCT>CTT	p.P279L		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	279	LRR 9.									ovary(1)|liver(1)	2						TTATCCAAGCCTCTGCCGGAG	0.597													73	196					0	0	1	0	0
PTPRM	5797	broad.mit.edu	37	18	8069746	8069746	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:8069746C>T	uc002knn.3	+	8	1698	c.1195C>T	c.(1195-1197)CGC>TGC	p.R399C	PTPRM_uc010dkv.2_Missense_Mutation_p.R399C|PTPRM_uc010wzl.1_Missense_Mutation_p.R186C	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	399	Fibronectin type-III 2.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				AATCACTATCCGCTGGGAGCC	0.423													18	48					0	0	1	0	0
KIAA0802	23255	broad.mit.edu	37	18	8720369	8720369	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:8720369G>A	uc002knr.2	+	4	374	c.232G>A	c.(232-234)GAA>AAA	p.E78K	KIAA0802_uc002knq.2_Missense_Mutation_p.E78K	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	429	Potential.										0						ATTGCACCACGAACTTAAGAC	0.463													26	76					0	0	1	0	0
KIAA0802	23255	broad.mit.edu	37	18	8819105	8819105	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:8819105C>T	uc002knr.2	+	13	3146	c.3004C>T	c.(3004-3006)CCG>TCG	p.P1002S	KIAA0802_uc002knq.2_Missense_Mutation_p.P961S|KIAA0802_uc002kns.2_Missense_Mutation_p.P342S	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1312											0						TGACTCCATCCCGTTTGAAGA	0.597													25	66					0	0	1	0	0
TWSG1	57045	broad.mit.edu	37	18	9396289	9396289	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:9396289C>T	uc002knz.2	+	4	426	c.235C>T	c.(235-237)CCT>TCT	p.P79S	TWSG1_uc002koa.2_Missense_Mutation_p.P4S	NM_020648	NP_065699	Q9GZX9	TWSG1_HUMAN	twisted gastrulation precursor	79										ovary(1)|pancreas(1)	2						TATGTGTAATCCTCGAAATTA	0.418													16	53					0	0	1	0	0
TXNDC2	84203	broad.mit.edu	37	18	9886187	9886187	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:9886187G>A	uc002koi.3	+	1	465	c.16G>A	c.(16-18)GAA>AAA	p.E6K	TXNDC2_uc010wzq.1_Intron|TXNDC2_uc002koh.3_Intron	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	6					cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						TGTAGACAAGGAACTAGGAAT	0.428													6	28					0	0	1	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887095	9887096	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:9887095_9887096GG>AA	uc002koi.3	+	2	1068_1069	c.619_620GG>AA	c.(619-621)GGT>AAT	p.G207N	TXNDC2_uc010wzq.1_Intron|TXNDC2_uc002koh.3_Missense_Mutation_p.G140N	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	207	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.|7.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						GCCCAAAGAGGGTGACATCCCC	0.569													55	170					0	0	1	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887508	9887508	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:9887508C>T	uc002koi.3	+	2	1481	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Silent_p.I277I	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	344	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.|16.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						AGGGTGACATCCCCAAGTCCC	0.577													68	133					0	0	1	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887521	9887521	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:9887521G>A	uc002koi.3	+	2	1494	c.1045G>A	c.(1045-1047)GAA>AAA	p.E349K	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.E282K	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	349	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.|16.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						CAAGTCCCCAGAAGAAACCAT	0.562													68	137					0	0	1	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887946	9887946	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:9887946C>T	uc002koi.3	+	2	1919	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Silent_p.F423F	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	490	Thioredoxin.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						GACCATTCTTCCATGCCCTGT	0.587													8	38					0	0	1	0	0
FAM38B	63895	broad.mit.edu	37	18	10689727	10689727	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:10689727G>T	uc002kor.3	-	7	1095	c.955C>A	c.(955-957)CTG>ATG	p.L319M	FAM38B_uc002koq.2_Missense_Mutation_p.L217M	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2362	Helical; (Potential).					integral to membrane	ion channel activity			ovary(1)	1						CAGCTGGACAGGCTCAAAGTT	0.527													9	78					2.17888e-05	2.18214e-05	1	1	0
FAM38B	63895	broad.mit.edu	37	18	10689791	10689791	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:10689791G>A	uc002kor.3	-	7	1031	c.891C>T	c.(889-891)CTC>CTT	p.L297L	FAM38B_uc002koq.2_Silent_p.L195L	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2340	Helical; (Potential).					integral to membrane	ion channel activity			ovary(1)	1						AAAAGGGCACGAGGCGAAACC	0.562													16	53					0	0	1	0	0
FAM38B	63895	broad.mit.edu	37	18	10696209	10696209	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:10696209G>A	uc002kor.3	-	5	725	c.585C>T	c.(583-585)CTC>CTT	p.L195L	FAM38B_uc002koq.2_Silent_p.L93L	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2238	Helical; (Potential).					integral to membrane	ion channel activity			ovary(1)	1						CAAACTGAATGAGGACCATCA	0.512													20	53					0	0	1	0	0
FAM38B	63895	broad.mit.edu	37	18	10697863	10697863	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:10697863C>T	uc002kor.3	-	3	382	c.242G>A	c.(241-243)CGA>CAA	p.R81Q	FAM38B_uc002koq.2_5'Flank	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2124	Ser-rich.					integral to membrane	ion channel activity			ovary(1)	1						ACTGCTGTTTCGGGTGCTTGT	0.403													4	33					0	0	1	0	0
CHMP1B	57132	broad.mit.edu	37	18	11851674	11851674	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:11851674C>T	uc002kqe.2	+	1	286	c.164C>T	c.(163-165)GCC>GTC	p.A55V	GNAL_uc002kqc.2_Intron|GNAL_uc010dkz.2_Intron|GNAL_uc002kqd.2_Intron	NM_020412	NP_065145	Q7LBR1	CHM1B_HUMAN	chromatin modifying protein 1B	55					cell cycle|cell division|protein transport	cytosol|late endosome membrane	protein domain specific binding				0						GCCGAAAATGCCATCCGCCAG	0.527													15	42					0	0	1	0	0
MPPE1	65258	broad.mit.edu	37	18	11886545	11886545	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:11886545G>A	uc002kqf.2	-	9	1461	c.820C>T	c.(820-822)CCA>TCA	p.P274S	MPPE1_uc002kqn.2_Intron|MPPE1_uc002kqg.2_RNA|MPPE1_uc002kqh.2_RNA|MPPE1_uc002kqi.2_RNA|MPPE1_uc002kqj.2_Missense_Mutation_p.P275S|MPPE1_uc002kqk.2_Missense_Mutation_p.P252S|MPPE1_uc002kql.2_Missense_Mutation_p.P275S|MPPE1_uc002kqm.2_Intron|MPPE1_uc010dla.1_Missense_Mutation_p.P275S	NM_023075	NP_075563	Q53F39	MPPE1_HUMAN	metallophosphoesterase 1 precursor	274					ER to Golgi vesicle-mediated transport|GPI anchor biosynthetic process	cis-Golgi network|endoplasmic reticulum exit site|ER-Golgi intermediate compartment membrane|integral to membrane	GPI anchor binding|manganese ion binding|phosphoric diester hydrolase activity				0						TCCTTAAATGGGATGTCCCTT	0.507													26	51					0	0	1	0	0
CIDEA	1149	broad.mit.edu	37	18	12274239	12274239	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:12274239G>A	uc002kqt.3	+	4	543	c.478G>A	c.(478-480)GAC>AAC	p.D160N	CIDEA_uc002kqu.3_Missense_Mutation_p.D194N|CIDEA_uc010dlc.2_RNA	NM_001279	NP_001270	O60543	CIDEA_HUMAN	cell death-inducing DFFA-like effector a isoform	160					DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change|lipid metabolic process|lipid storage|negative regulation of apoptosis|negative regulation of cytokine secretion|negative regulation of lipid catabolic process|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of sequestering of triglyceride|temperature homeostasis	mitochondrial envelope|nucleus	protein homodimerization activity			ovary(1)|central_nervous_system(1)	2						CGTGTCCTACGACATCCGGTG	0.587													26	67					0	0	1	0	0
CIDEA	1149	broad.mit.edu	37	18	12277269	12277269	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:12277269G>A	uc002kqt.3	+	5	725	c.660G>A	c.(658-660)TAG>TAA	p.*220*	CIDEA_uc002kqu.3_Silent_p.*254*|CIDEA_uc010dlc.2_RNA	NM_001279	NP_001270	O60543	CIDEA_HUMAN	cell death-inducing DFFA-like effector a isoform	220					DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change|lipid metabolic process|lipid storage|negative regulation of apoptosis|negative regulation of cytokine secretion|negative regulation of lipid catabolic process|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of sequestering of triglyceride|temperature homeostasis	mitochondrial envelope|nucleus	protein homodimerization activity			ovary(1)|central_nervous_system(1)	2						CGTGTGGATAGGGATGCAGGC	0.527													25	29					0	0	1	0	0
PSMG2	56984	broad.mit.edu	37	18	12706668	12706668	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:12706668T>G	uc002krk.2	+	2	220	c.177T>G	c.(175-177)AAT>AAG	p.N59K	PSMG2_uc002krg.2_Missense_Mutation_p.N28K|PSMG2_uc002krj.1_Missense_Mutation_p.N59K	NM_020232	NP_064617	Q969U7	PSMG2_HUMAN	proteasome (prosome, macropain) assembly	59					proteasome assembly	nucleus	protein binding				0						TTGGAAACAATCCATATGCGA	0.368													14	98					0	0	1	0	0
SEH1L	81929	broad.mit.edu	37	18	12982560	12982560	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:12982560C>T	uc002krr.2	+	7	943	c.805C>T	c.(805-807)CAT>TAT	p.H269Y	SEH1L_uc002krq.2_Missense_Mutation_p.H269Y	NM_031216	NP_112493	Q96EE3	SEH1_HUMAN	sec13-like protein isoform 2	269					attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|carbohydrate metabolic process|cell division|glucose transport|mitotic metaphase plate congression|mitotic prometaphase|mRNA transport|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex					0						GTTTGAAATCCATATAGTGGC	0.378													11	114					0	0	1	0	0
CEP192	55125	broad.mit.edu	37	18	13092387	13092387	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:13092387C>T	uc010xac.1	+	34	6195	c.6115C>T	c.(6115-6117)CCC>TCC	p.P2039S	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.P1564S|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Missense_Mutation_p.P461S|CEP192_uc002krw.2_Missense_Mutation_p.P188S|CEP192_uc002krx.2_Missense_Mutation_p.P43S|CEP192_uc002kry.2_RNA	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	2039										ovary(4)|pancreas(1)	5						ATATGATCTTCCCCAACGACC	0.308													18	49					0	0	1	0	0
RNMT	8731	broad.mit.edu	37	18	13741672	13741672	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:13741672C>T	uc002ksk.1	+	6	1023	c.956C>T	c.(955-957)CCC>CTC	p.P319L	RNMT_uc002ksl.1_Missense_Mutation_p.P319L|RNMT_uc002ksm.1_Missense_Mutation_p.P319L|RNMT_uc010dlk.2_Missense_Mutation_p.P319L|RNMT_uc010xae.1_RNA	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	319					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						GGTACTACTCCCAATAGCTTT	0.343													17	89					0	0	1	0	0
RNMT	8731	broad.mit.edu	37	18	13742516	13742516	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:13742516C>T	uc002ksk.1	+	7	1071	c.1004C>T	c.(1003-1005)TCA>TTA	p.S335L	RNMT_uc002ksl.1_Missense_Mutation_p.S335L|RNMT_uc002ksm.1_Missense_Mutation_p.S335L|RNMT_uc010dlk.2_Missense_Mutation_p.S335L|RNMT_uc010xae.1_RNA	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	335					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						GAAACAGAATCATTTGGAAAT	0.328													40	82					0	0	1	0	0
RNMT	8731	broad.mit.edu	37	18	13746268	13746268	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:13746268G>C	uc002ksk.1	+	8	1256	c.1189G>C	c.(1189-1191)GAA>CAA	p.E397Q	RNMT_uc002ksl.1_Missense_Mutation_p.E397Q|RNMT_uc002ksm.1_Missense_Mutation_p.E397Q|RNMT_uc010dlk.2_Missense_Mutation_p.E397Q|RNMT_uc010xae.1_RNA	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	397					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						AACATTTCTGGAATTCTACGA	0.308													32	84					0	0	1	0	0
CXADRP3	440224	broad.mit.edu	37	18	14479246	14479246	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:14479246G>A	uc010xai.1	-	3		c.318C>T				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						ACAGGAGCACGAAGCGCAGCA	0.612													9	21					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14533190	14533190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:14533190G>A	uc010dln.2	-	5	1379	c.925C>T	c.(925-927)CTC>TTC	p.L309F	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	309	ANK 6.									skin(3)	3						GCAAGTATGAGGGCAGTTCTA	0.343													28	97					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14534953	14534953	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:14534953C>T	uc010dln.2	-	4	1318	c.864G>A	c.(862-864)GTG>GTA	p.V288V	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	288	ANK 5.									skin(3)	3						TTAAAAATTTCACCACTTGCT	0.299													12	127					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14542887	14542887	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:14542887C>T	uc010dln.2	-	1	713	c.259G>A	c.(259-261)GAC>AAC	p.D87N	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	87										skin(3)	3						AAGGAGTTGTCATGGTCTCCA	0.592													72	320					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14543004	14543004	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:14543004C>T	uc010dln.2	-	1	596	c.142G>A	c.(142-144)GAC>AAC	p.D48N	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	48										skin(3)	3						TCGTCGTGGTCTCCAGAAGTG	0.587													58	299					0	0	1	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14791399	14791399	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:14791399G>A	uc010dlo.2	+	16	1915	c.1735_splice	c.e16-1	p.S579_splice	ANKRD30B_uc010xak.1_Splice_Site	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B											ovary(1)|skin(1)	2						ACTTTTAACAGAGTCCCTGTG	0.299													13	72					0	0	1	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14851538	14851538	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:14851538C>T	uc010dlo.2	+	36	3418	c.3238C>T	c.(3238-3240)CTC>TTC	p.L1080F	ANKRD30B_uc010xal.1_Missense_Mutation_p.L222F	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	1165	Potential.									ovary(1)|skin(1)	2						TGAAAATGATCTCTTTCATGA	0.308													9	13					0	0	1	0	0
ROCK1	6093	broad.mit.edu	37	18	18539819	18539819	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:18539819G>A	uc002kte.2	-	29	4435	c.3494C>T	c.(3493-3495)TCT>TTT	p.S1165F		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	1165	PH.|Auto-inhibitory.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					CAATACCATAGATGGATTGGA	0.294													10	35					0	0	1	0	0
MIR320C1	100302135	broad.mit.edu	37	18	19263551	19263551	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:19263551G>A	hsa-mir-320c-1|MI0003778	+			c.81G>A			ABHD3_uc002ktl.2_Intron|ABHD3_uc002ktm.2_Intron|ABHD3_uc010xao.1_Intron																	0						GAAAAAAAATGATGTAGGTGA	0.274													10	37					0	0	1	0	0
GATA6	2627	broad.mit.edu	37	18	19751212	19751212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:19751212C>T	uc002ktt.1	+	2	372	c.107C>T	c.(106-108)CCT>CTT	p.P36L	GATA6_uc002ktu.1_Missense_Mutation_p.P36L	NM_005257	NP_005248	Q92908	GATA6_HUMAN	GATA binding protein 6	36					blood coagulation|cardiac vascular smooth muscle cell differentiation|cellular response to hypoxia|intestinal epithelial cell differentiation|male gonad development|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor-beta1 production|negative regulation of transforming growth factor-beta2 production|outflow tract septum morphogenesis|positive regulation of angiogenesis|positive regulation of cell cycle arrest|positive regulation of transcription from RNA polymerase II promoter|response to drug|response to growth factor stimulus		protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(3)	3	all_cancers(21;0.00271)|all_epithelial(16;7.31e-05)|Ovarian(2;0.116)|Lung NSC(20;0.123)|all_lung(20;0.246)		STAD - Stomach adenocarcinoma(5;0.106)			TCCACGCCGCCTTCCCCCATC	0.736													15	23					0	0	1	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995647	19995647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:19995647G>A	uc002ktv.1	-	1	2232	c.2128C>T	c.(2128-2130)CCA>TCA	p.P710S		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	710	Pro-rich.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GGTGGACCTGGGACATCCCTT	0.522													33	95					0	0	1	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995791	19995791	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:19995791G>A	uc002ktv.1	-	1	2088	c.1984C>T	c.(1984-1986)CCT>TCT	p.P662S		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	662	Pro-rich.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					AGAGGTGGAGGAACAAAGCCA	0.473													96	233					0	0	1	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995875	19995875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:19995875C>T	uc002ktv.1	-	1	2004	c.1900G>A	c.(1900-1902)GAT>AAT	p.D634N		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	634						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TCTTTGGTATCATTTCTACTG	0.433													88	229					0	0	1	0	0
CTAGE1	64693	broad.mit.edu	37	18	19997289	19997289	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:19997289C>T	uc002ktv.1	-	1	590	c.486G>A	c.(484-486)ATG>ATA	p.M162I		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	162	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TCTTGAAGGTCATTTTGGCTT	0.378													73	140					0	0	1	0	0
RIOK3	8780	broad.mit.edu	37	18	21044179	21044179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21044179C>T	uc002kui.3	+	4	952	c.335C>T	c.(334-336)TCC>TTC	p.S112F	RIOK3_uc010dls.2_Missense_Mutation_p.S112F|RIOK3_uc010xas.1_Missense_Mutation_p.S96F|RIOK3_uc010xat.1_5'Flank	NM_003831	NP_003822	O14730	RIOK3_HUMAN	sudD suppressor of bimD6 homolog	112					chromosome segregation		ATP binding|protein binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(21;0.000106)|all_epithelial(16;6.74e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GTTTCCATTTCCTTTGAAAAT	0.373													9	42					0	0	1	0	0
RIOK3	8780	broad.mit.edu	37	18	21053552	21053552	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21053552C>T	uc002kui.3	+	8	1592	c.975C>T	c.(973-975)ATC>ATT	p.I325I	RIOK3_uc010dls.2_Silent_p.I325I|RIOK3_uc010xas.1_Silent_p.I309I|RIOK3_uc010xat.1_Intron	NM_003831	NP_003822	O14730	RIOK3_HUMAN	sudD suppressor of bimD6 homolog	325	Protein kinase.			I -> H (in Ref. 1; AAC26080).	chromosome segregation		ATP binding|protein binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(21;0.000106)|all_epithelial(16;6.74e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GTAAGATCATCCGCATGTGGG	0.323													7	50					0	0	1	0	0
NPC1	4864	broad.mit.edu	37	18	21119923	21119923	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21119923G>A	uc002kum.3	-	18	2921	c.2647C>T	c.(2647-2649)CTG>TTG	p.L883L	NPC1_uc010xaz.1_Silent_p.L616L|NPC1_uc010xba.1_Silent_p.L728L	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	883					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					CCCGCATGCAGGTACTGACTG	0.483													22	73					0	0	1	0	0
NPC1	4864	broad.mit.edu	37	18	21136298	21136298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21136298G>A	uc002kum.3	-	8	1509	c.1235C>T	c.(1234-1236)GCC>GTC	p.A412V	NPC1_uc010xaz.1_Missense_Mutation_p.A213V|NPC1_uc010xba.1_Missense_Mutation_p.A257V	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	412					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AGTGAGAGGGGCCCGGATGAT	0.562													25	53					0	0	1	0	0
NPC1	4864	broad.mit.edu	37	18	21153424	21153424	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21153424A>T	uc002kum.3	-	2	446	c.172T>A	c.(172-174)TTA>ATA	p.L58I	NPC1_uc010xba.1_Intron	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	58					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					ACCTGCACTAAGTCATATCCA	0.423													58	140					0	0	1	0	0
ANKRD29	147463	broad.mit.edu	37	18	21209887	21209887	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21209887G>A	uc002kun.2	-	6	615	c.458C>T	c.(457-459)GCC>GTC	p.A153V	ANKRD29_uc002kuo.2_Missense_Mutation_p.A153V	NM_173505	NP_775776	Q8N6D5	ANR29_HUMAN	ankyrin repeat domain 29	153	ANK 5.									ovary(3)|breast(1)	4	all_cancers(21;5.07e-05)|all_epithelial(16;2.49e-07)|Lung NSC(20;0.00211)|all_lung(20;0.00676)|Colorectal(14;0.0202)|Ovarian(20;0.127)					ACCACCTTGGGCAGCTAGGAA	0.403													4	40					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21328024	21328024	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21328024C>T	uc002kuq.2	+	3	651	c.565C>T	c.(565-567)CAT>TAT	p.H189Y	LAMA3_uc010dlv.1_Missense_Mutation_p.H189Y|LAMA3_uc002kur.2_Missense_Mutation_p.H189Y	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	189	Laminin N-terminal.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATATTTTGCTCGTAAGTAATC	0.323													27	63					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21355829	21355829	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21355829C>T	uc002kuq.2	+	10	1433	c.1347C>T	c.(1345-1347)TTC>TTT	p.F449F	LAMA3_uc010dlv.1_Silent_p.F449F|LAMA3_uc002kur.2_Silent_p.F449F	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	449	Laminin EGF-like 3.|Domain V.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCCAAATTTCCACGGAGACA	0.493													27	79					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21402245	21402245	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21402245G>A	uc002kuq.2	+	20	2420	c.2334G>A	c.(2332-2334)GGG>GGA	p.G778G	LAMA3_uc002kur.2_Silent_p.G778G	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	778					cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGAATGTAGGGAAGTCAAGTG	0.383													32	74					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21419872	21419872	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21419872G>A	uc002kuq.2	+	27	3401	c.3315G>A	c.(3313-3315)GGG>GGA	p.G1105G	LAMA3_uc002kur.2_Silent_p.G1105G	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1105	Domain IV 1 (domain IV B).				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTCTTCCTGGGGTCACCTTGA	0.353													29	68					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21425035	21425035	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21425035G>A	uc002kuq.2	+	30	3752	c.3666G>A	c.(3664-3666)ATG>ATA	p.M1222I	LAMA3_uc002kur.2_Missense_Mutation_p.M1222I	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1222	Domain IV 1 (domain IV B).				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AAAAATCCATGGACAAGTCAC	0.423													15	38					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21470000	21470000	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21470000C>T	uc002kuq.2	+	42	5415	c.5329C>T	c.(5329-5331)CCC>TCC	p.P1777S	LAMA3_uc002kur.2_Missense_Mutation_p.P1777S|LAMA3_uc002kus.3_Missense_Mutation_p.P168S|LAMA3_uc002kut.3_Missense_Mutation_p.P168S	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1777	Laminin EGF-like 14.|Domain III A.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTTCGGGAATCCCCAGAAATT	0.493													35	120					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21478756	21478757	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21478756_21478757GG>AA	uc002kuq.2	+	45	5754_5755	c.5668_5669GG>AA	c.(5668-5670)GGC>AAC	p.G1890N	LAMA3_uc002kur.2_Missense_Mutation_p.G1890N|LAMA3_uc002kus.3_Missense_Mutation_p.G281N|LAMA3_uc002kut.3_Missense_Mutation_p.G281N	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1890	Domain II and I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AAAAATAGAAGGCCTGGAAAGA	0.347													25	91					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21481174	21481174	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21481174G>A	uc002kuq.2	+	48	6174	c.6088G>A	c.(6088-6090)GAA>AAA	p.E2030K	LAMA3_uc002kur.2_Missense_Mutation_p.E1974K|LAMA3_uc002kus.3_Missense_Mutation_p.E421K|LAMA3_uc002kut.3_Missense_Mutation_p.E365K	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2030	Domain II and I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTCTTTAAATGAATACGAAGC	0.507													23	49					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21489199	21489199	+	Silent	SNP	C	T	T	rs142459106		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21489199C>T	uc002kuq.2	+	55	7184	c.7098C>T	c.(7096-7098)ATC>ATT	p.I2366I	LAMA3_uc002kur.2_Silent_p.I2310I|LAMA3_uc002kus.3_Silent_p.I757I|LAMA3_uc002kut.3_Silent_p.I701I	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2366	Domain II and I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGGGAAACATCTCTGACAACA	0.458													28	86					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21523896	21523896	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21523896C>T	uc002kuq.2	+	69	9257	c.9171C>T	c.(9169-9171)ATC>ATT	p.I3057I	LAMA3_uc002kur.2_Silent_p.I3001I|LAMA3_uc002kus.3_Silent_p.I1448I|LAMA3_uc002kut.3_Silent_p.I1392I	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3057	Laminin G-like 4.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AATTGAGGATCAAAAGCAAGG	0.468													11	62					0	0	1	0	0
OSBPL1A	114876	broad.mit.edu	37	18	21743221	21743221	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:21743221G>A	uc002kve.2	-	28	2949	c.2775C>T	c.(2773-2775)CCC>CCT	p.P925P	OSBPL1A_uc002kvd.2_Silent_p.P412P|OSBPL1A_uc010xbc.1_Silent_p.P543P	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	925					cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					CTCCATTGTAGGGATTAGGAC	0.408													25	65					0	0	1	0	0
ZNF521	25925	broad.mit.edu	37	18	22806109	22806109	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:22806109G>A	uc002kvk.2	-	4	2020	c.1773C>T	c.(1771-1773)GCC>GCT	p.A591A	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Silent_p.A591A|ZNF521_uc002kvl.2_Silent_p.A371A	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	591					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					TATAATTCAGGGCCAAGGGAA	0.413			T	PAX5	ALL								26	55					0	0	1	0	0
SS18	6760	broad.mit.edu	37	18	23612462	23612462	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:23612462A>G	uc002kvm.2	-	10	1209	c.1131T>C	c.(1129-1131)CCT>CCC	p.P377P	SS18_uc002kvn.2_Silent_p.P346P|SS18_uc010xbf.1_Silent_p.P295P|SS18_uc010xbg.1_Silent_p.P294P|SS18_uc010xbh.1_Silent_p.P294P|SS18_uc010xbi.1_Silent_p.P354P	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	377	SH2-binding (Potential).|Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					GTGGGTAGTTAGGATACTGAG	0.498			T	SSX1| SSX2	synovial sarcoma								24	105					0	0	1	0	0
SS18	6760	broad.mit.edu	37	18	23615043	23615043	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:23615043G>A	uc002kvm.2	-	9	1100	c.1022C>T	c.(1021-1023)CCA>CTA	p.P341L	SS18_uc002kvn.2_Missense_Mutation_p.P310L|SS18_uc010xbf.1_Missense_Mutation_p.P259L|SS18_uc010xbg.1_Missense_Mutation_p.P258L|SS18_uc010xbh.1_Missense_Mutation_p.P258L|SS18_uc010xbi.1_Missense_Mutation_p.P318L|SS18_uc010dlz.1_Missense_Mutation_p.P289L	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	341	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					TCCCTGTTGTGGAGGTGGTCC	0.473			T	SSX1| SSX2	synovial sarcoma								13	104					0	0	1	0	0
AQP4	361	broad.mit.edu	37	18	24436349	24436349	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:24436349G>A	uc002kwa.2	-	5	861	c.798C>T	c.(796-798)TTC>TTT	p.F266F	AQP4_uc002kvz.2_Silent_p.F244F	NM_001650	NP_001641	P55087	AQP4_HUMAN	aquaporin 4 isoform a	266	Cytoplasmic (Potential).				cellular response to interferon-gamma|excretion|nervous system development	cytoplasm|external side of plasma membrane|integral to plasma membrane	water channel activity				0	all_cancers(21;0.0172)|Lung NSC(5;0.00299)|all_lung(6;0.00747)|Ovarian(20;0.124)					CAGCTTTGCTGAAGGCTTCTT	0.488													62	266					0	0	1	0	0
AQP4	361	broad.mit.edu	37	18	24440779	24440779	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:24440779G>A	uc002kwa.2	-	4	713	c.650C>T	c.(649-651)TCC>TTC	p.S217F	AQP4_uc002kvz.2_Missense_Mutation_p.S195F	NM_001650	NP_001641	P55087	AQP4_HUMAN	aquaporin 4 isoform a	217	Extracellular (Potential).				cellular response to interferon-gamma|excretion|nervous system development	cytoplasm|external side of plasma membrane|integral to plasma membrane	water channel activity				0	all_cancers(21;0.0172)|Lung NSC(5;0.00299)|all_lung(6;0.00747)|Ovarian(20;0.124)					AGGTCCAAAGGATCGGGCGGG	0.433													11	197					0	0	1	0	0
AQP4	361	broad.mit.edu	37	18	24442218	24442218	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:24442218C>T	uc002kwa.2	-	2	438	c.375G>A	c.(373-375)GGG>GGA	p.G125G	AQP4_uc002kvz.2_Silent_p.G103G	NM_001650	NP_001641	P55087	AQP4_HUMAN	aquaporin 4 isoform a	125	Helical; (Potential).				cellular response to interferon-gamma|excretion|nervous system development	cytoplasm|external side of plasma membrane|integral to plasma membrane	water channel activity				0	all_cancers(21;0.0172)|Lung NSC(5;0.00299)|all_lung(6;0.00747)|Ovarian(20;0.124)					CAATGATGGCCCCCAGGCACT	0.557													28	67					0	0	1	0	0
AQP4	361	broad.mit.edu	37	18	24442461	24442461	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:24442461G>A	uc002kwa.2	-	2	195	c.132C>T	c.(130-132)GCC>GCT	p.A44A	C18orf16_uc002kwb.2_5'Flank|C18orf16_uc010xbm.1_5'Flank|AQP4_uc002kvz.2_Silent_p.A22A	NM_001650	NP_001641	P55087	AQP4_HUMAN	aquaporin 4 isoform a	44	Helical; (Potential).				cellular response to interferon-gamma|excretion|nervous system development	cytoplasm|external side of plasma membrane|integral to plasma membrane	water channel activity				0	all_cancers(21;0.0172)|Lung NSC(5;0.00299)|all_lung(6;0.00747)|Ovarian(20;0.124)					AAATAAGCATGGCCAGAAATT	0.488													83	186					0	0	1	0	0
CHST9	83539	broad.mit.edu	37	18	24628466	24628466	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:24628466C>T	uc002kwd.2	-	2	321	c.123G>A	c.(121-123)GGG>GGA	p.G41G	C18orf16_uc010xbm.1_Intron|CHST9_uc002kwc.2_5'UTR|CHST9_uc002kwe.2_Silent_p.G41G	NM_031422	NP_113610	Q7L1S5	CHST9_HUMAN	GalNAc-4-sulfotransferase 2	41	Lumenal (Potential).				carbohydrate biosynthetic process|glycosaminoglycan metabolic process|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	extracellular region|Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			ovary(2)|skin(1)	3	all_lung(6;0.0145)|Ovarian(20;0.124)					TCTCCACTCTCCCTGAAATGA	0.358													18	60					0	0	1	0	0
CDH2	1000	broad.mit.edu	37	18	25543330	25543330	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:25543330G>A	uc002kwg.2	-	15	2964	c.2505C>T	c.(2503-2505)TTC>TTT	p.F835F	CDH2_uc010xbn.1_Silent_p.F804F	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	835	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						CCTCATTAATGAAGTCCCCAA	0.488													9	29					0	0	1	0	0
CDH2	1000	broad.mit.edu	37	18	25572670	25572670	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:25572670G>A	uc002kwg.2	-	9	1752	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	CDH2_uc010xbn.1_Silent_p.F400F	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	431	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						TCTGGATGGCGAACCGTCCAG	0.527													31	84					0	0	1	0	0
CDH2	1000	broad.mit.edu	37	18	25585831	25585831	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:25585831G>T	uc002kwg.2	-	6	1288	c.829C>A	c.(829-831)CCT>ACT	p.P277T	CDH2_uc010xbn.1_Missense_Mutation_p.P246T	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	277	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						GATCCCTCAGGAACTGTCCCA	0.398													33	98					1.22384e-17	1.23003e-17	1	1	0
CDH2	1000	broad.mit.edu	37	18	25593852	25593852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:25593852C>T	uc002kwg.2	-	3	653	c.194G>A	c.(193-195)GGA>GAA	p.G65E	CDH2_uc010xbn.1_Missense_Mutation_p.G34E	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	65					adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						TTTTCTTTTTCCATTGCAGTT	0.358													15	53					0	0	1	0	0
DSC3	1825	broad.mit.edu	37	18	28576899	28576899	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28576899C>T	uc002kwj.3	-	15	2506	c.2351G>A	c.(2350-2352)GGA>GAA	p.G784E	DSC3_uc002kwi.3_Missense_Mutation_p.G784E	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	784	Cytoplasmic (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			CTGGTTTCCTCCTTTCATCAT	0.498													21	47					0	0	1	0	0
DSC3	1825	broad.mit.edu	37	18	28586965	28586965	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28586965G>A	uc002kwj.3	-	12	1951	c.1796C>T	c.(1795-1797)CCT>CTT	p.P599L	DSC3_uc002kwi.3_Missense_Mutation_p.P599L	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	599	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			AGGTTCATCAGGATCAACAGC	0.368													28	45					0	0	1	0	0
DSC3	1825	broad.mit.edu	37	18	28598107	28598107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28598107C>T	uc002kwj.3	-	9	1348	c.1193G>A	c.(1192-1194)GGA>GAA	p.G398E	DSC3_uc002kwi.3_Missense_Mutation_p.G398E	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	398	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			ATTTTCATTTCCCTTTAAAAT	0.318													29	96					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28647982	28647982	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28647982C>T	uc002kwl.3	-	16	3159	c.2705G>A	c.(2704-2706)TGA>TAA	p.*902*	DSC2_uc002kwk.3_3'UTR	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	902					homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			AGAACACACTCATCTCTTCAT	0.373													9	47					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28648063	28648063	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28648063C>T	uc002kwl.3	-	16	3078	c.2624G>A	c.(2623-2625)CGA>CAA	p.R875Q	DSC2_uc002kwk.3_3'UTR	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	875	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			TTCTTCTTGTCGTTCACTGCA	0.413													33	79					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28649015	28649015	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28649015C>T	uc002kwl.3	-	15	2807	c.2353G>A	c.(2353-2355)GAA>AAA	p.E785K	DSC2_uc002kwk.3_Missense_Mutation_p.E785K	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	785	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			TTCACCATTTCGATGGTCTCC	0.582													14	60					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28649024	28649024	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28649024C>T	uc002kwl.3	-	15	2798	c.2344G>A	c.(2344-2346)GAG>AAG	p.E782K	DSC2_uc002kwk.3_Missense_Mutation_p.E782K	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	782	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			TCGATGGTCTCCTGACCTCCG	0.567													23	48					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28650782	28650782	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28650782C>T	uc002kwl.3	-	14	2614	c.2160G>A	c.(2158-2160)GGG>GGA	p.G720G	DSC2_uc002kwk.3_Silent_p.G720G	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	720	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			GTTTAGACGTCCCAGAAGCCC	0.388													19	86					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28654727	28654727	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28654727G>A	uc002kwl.3	-	12	2264	c.1810C>T	c.(1810-1812)CAT>TAT	p.H604Y	DSC2_uc002kwk.3_Missense_Mutation_p.H604Y	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	604	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			GGTGGGCCATGGATAGGCTCA	0.413													17	37					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28654823	28654823	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28654823C>T	uc002kwl.3	-	12	2168	c.1714G>A	c.(1714-1716)GAT>AAT	p.D572N	DSC2_uc002kwk.3_Missense_Mutation_p.D572N	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	572	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			GGGCTGTTATCATTCACGTCT	0.408													19	32					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28659848	28659848	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28659848C>T	uc002kwl.3	-	11	2082	c.1628G>A	c.(1627-1629)GGC>GAC	p.G543D	DSC2_uc002kwk.3_Missense_Mutation_p.G543D	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	543	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			ATTATATATGCCATTTTTGAT	0.388													65	161					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28659862	28659862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28659862C>T	uc002kwl.3	-	11	2068	c.1614G>A	c.(1612-1614)GAG>GAA	p.E538E	DSC2_uc002kwk.3_Silent_p.E538E	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	538	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			TTTTGATGGTCTCTGCCTCTC	0.388													19	229					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28660122	28660122	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28660122C>T	uc002kwl.3	-	10	1914	c.1460G>A	c.(1459-1461)GGA>GAA	p.G487E	DSC2_uc002kwk.3_Missense_Mutation_p.G487E	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	487	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			GCTTGTTGTTCCCACTTCTGC	0.383													46	97					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28667647	28667647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28667647C>T	uc002kwl.3	-	6	1214	c.760G>A	c.(760-762)GAA>AAA	p.E254K	DSC2_uc002kwk.3_Missense_Mutation_p.E254K	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	254	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			CTGCAATTTTCAAAAATTGTA	0.303													39	78					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28710500	28710500	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28710500C>T	uc002kwn.2	-	16	2924	c.2662G>A	c.(2662-2664)GCA>ACA	p.A888T	DSC1_uc002kwm.2_3'UTR|uc002kwo.1_5'Flank	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	888	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CATGTCTTTGCTAATGTCCTA	0.428													38	185					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28710546	28710546	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28710546C>T	uc002kwn.2	-	16	2878	c.2616G>A	c.(2614-2616)GAG>GAA	p.E872E	DSC1_uc002kwm.2_3'UTR|uc002kwo.1_5'Flank	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	872	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			ACTCCAGTCCCTCTTCTTCCT	0.423													40	196					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28710605	28710605	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28710605C>T	uc002kwn.2	-	16	2819	c.2557G>A	c.(2557-2559)GAA>AAA	p.E853K	DSC1_uc002kwm.2_3'UTR|uc002kwo.1_5'Flank	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	853	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CCTTTGCCTTCATAGTTATAC	0.428													55	133					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28711559	28711559	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28711559C>T	uc002kwn.2	-	15	2747	c.2485G>A	c.(2485-2487)GAA>AAA	p.E829K	DSC1_uc002kwm.2_Missense_Mutation_p.E829K|uc002kwo.1_RNA	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	829	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			GAACTTACTTCGCCAAGCCGA	0.453													24	96					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28714076	28714076	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28714076G>A	uc002kwn.2	-	13	2156	c.1894C>T	c.(1894-1896)CGT>TGT	p.R632C	DSC1_uc002kwm.2_Missense_Mutation_p.R632C	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	632	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TGCCGTTGACGAAGAATGGCA	0.353													33	79					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28722112	28722112	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28722112C>T	uc002kwn.2	-	9	1372	c.1110G>A	c.(1108-1110)GTG>GTA	p.V370V	DSC1_uc002kwm.2_Silent_p.V370V	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	370	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			GTAAAATCTCCACGTCAATTC	0.333													19	82					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28725631	28725631	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28725631G>A	uc002kwn.2	-	7	1144	c.882C>T	c.(880-882)TTC>TTT	p.F294F	DSC1_uc002kwm.2_Silent_p.F294F	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	294	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			GGTGTATGGAGAAATGCTTTG	0.393													15	153					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28736065	28736065	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28736065G>A	uc002kwn.2	-	4	674	c.412C>T	c.(412-414)CCT>TCT	p.P138S	DSC1_uc002kwm.2_Missense_Mutation_p.P138S	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	138	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			GCTGGAATAGGAGCCCATCGT	0.408													43	75					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28906923	28906923	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28906923C>T	uc002kwp.2	+	3	383	c.171C>T	c.(169-171)GCC>GCT	p.A57A		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	57	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TCGCAGCAGCCTGTCGTGAAG	0.398													24	99					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28909943	28909943	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28909943C>T	uc002kwp.2	+	5	673	c.461C>T	c.(460-462)CCT>CTT	p.P154L		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	154	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			AATGACAACCCTCCAGTGTTT	0.433													23	98					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28913995	28913995	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28913995C>T	uc002kwp.2	+	8	1047	c.835C>T	c.(835-837)CAA>TAA	p.Q279*		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	279	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			CATAGAAATTCAAGAAAATAC	0.338													23	73					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28918362	28918362	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28918362G>A	uc002kwp.2	+	10	1562	c.1350G>A	c.(1348-1350)AAG>AAA	p.K450K		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	450	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			AAGTTACCAAGGAACAGTACA	0.338													21	68					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28934633	28934633	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28934633C>T	uc002kwp.2	+	15	2686	c.2474C>T	c.(2473-2475)CCT>CTT	p.P825L	DSG1_uc010xbp.1_Missense_Mutation_p.P184L	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	825	Desmoglein repeat 1.|Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			CATCCTAAGCCTATTCTCGAT	0.517													67	164					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28934929	28934929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28934929G>A	uc002kwp.2	+	15	2982	c.2770G>A	c.(2770-2772)GAA>AAA	p.E924K	DSG1_uc010xbp.1_Missense_Mutation_p.E283K	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	924	Cytoplasmic (Potential).|Desmoglein repeat 4.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GGTAGTGACAGAAAGAGTAAT	0.453													48	185					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28934998	28934998	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28934998C>T	uc002kwp.2	+	15	3051	c.2839C>T	c.(2839-2841)CAC>TAC	p.H947Y	DSG1_uc010xbp.1_Missense_Mutation_p.H306Y	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	947	Desmoglein repeat 5.|Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			AGCCAATGCCCACAATGTCAT	0.507													79	198					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28966722	28966722	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28966722C>T	uc002kwq.2	+	3	291	c.156C>T	c.(154-156)ATC>ATT	p.I52I	DSG4_uc002kwr.2_Silent_p.I52I	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	52	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GGGAGTGGATCAAGTTTGCCG	0.438													9	110					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28968350	28968350	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28968350G>A	uc002kwq.2	+	4	372	c.237G>A	c.(235-237)TCG>TCA	p.S79S	DSG4_uc002kwr.2_Silent_p.S79S	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	79	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACTGCGAATCGAACCAGAAGA	0.353													21	57					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28968384	28968384	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28968384G>A	uc002kwq.2	+	4	406	c.271G>A	c.(271-273)GGG>AGG	p.G91R	DSG4_uc002kwr.2_Missense_Mutation_p.G91R	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	91	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TTCTGGAGTAGGGATTGATCG	0.403													17	63					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28968393	28968393	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28968393C>T	uc002kwq.2	+	4	415	c.280C>T	c.(280-282)CGA>TGA	p.R94*	DSG4_uc002kwr.2_Nonsense_Mutation_p.R94*	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	94	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGGGATTGATCGACCACCATA	0.408													16	64					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28971146	28971146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28971146G>A	uc002kwq.2	+	7	925	c.790G>A	c.(790-792)GAT>AAT	p.D264N	DSG4_uc002kwr.2_Missense_Mutation_p.D264N	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	264	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGACGTCAACGATAATTTCCC	0.388													29	72					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28971156	28971156	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28971156C>T	uc002kwq.2	+	7	935	c.800C>T	c.(799-801)CCC>CTC	p.P267L	DSG4_uc002kwr.2_Missense_Mutation_p.P267L	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	267	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GATAATTTCCCCACCTTAGAG	0.398													20	81					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28983403	28983403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28983403G>A	uc002kwq.2	+	11	1577	c.1442G>A	c.(1441-1443)GGA>GAA	p.G481E	DSG4_uc002kwr.2_Missense_Mutation_p.G481E	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	481	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACAGCTACAGGAACCATATGT	0.398													13	26					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28992873	28992873	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28992873C>T	uc002kwq.2	+	16	2573	c.2438C>T	c.(2437-2439)TCT>TTT	p.S813F	DSG4_uc002kwr.2_Missense_Mutation_p.S832F	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	813	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GGAGTCGGGTCTCCCGTAGGC	0.428													30	87					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28993086	28993086	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28993086C>T	uc002kwq.2	+	16	2786	c.2651C>T	c.(2650-2652)ACT>ATT	p.T884I	DSG4_uc002kwr.2_Missense_Mutation_p.T903I	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	884	Cytoplasmic (Potential).|Desmoglein repeat 1.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCAGGATTGACTCCCTCAGAA	0.428													53	119					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28993181	28993181	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:28993181C>T	uc002kwq.2	+	16	2881	c.2746C>T	c.(2746-2748)CCA>TCA	p.P916S	DSG4_uc002kwr.2_Missense_Mutation_p.P935S	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	916	Cytoplasmic (Potential).|Desmoglein repeat 2.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TAATGCTGATCCATGTGTGCA	0.433													68	144					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29039024	29039024	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29039024G>A	uc002kws.2	+	5	510	c.401G>A	c.(400-402)GGA>GAA	p.G134E		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	134	Extracellular (Potential).|Cadherin 1.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AATGCCCAAGGACTAGATGTA	0.328													21	39					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29039818	29039818	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29039818G>A	uc002kws.2	+	6	637	c.528G>A	c.(526-528)GTG>GTA	p.V176V		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	176	Extracellular (Potential).|Cadherin 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACTCACTGGTGATGATACTAA	0.353													17	50					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29040886	29040886	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29040886G>A	uc002kws.2	+	7	884	c.775G>A	c.(775-777)GAT>AAT	p.D259N		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	259	Extracellular (Potential).|Cadherin 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TAAAGTGAAAGATGTCAACGA	0.353													20	40					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29044154	29044154	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29044154C>T	uc002kws.2	+	9	1189	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	360	Cadherin 3.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AATCAGTTATCTCTCGATACC	0.368													24	60					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29044228	29044228	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29044228C>T	uc002kws.2	+	9	1263	c.1154C>T	c.(1153-1155)CCT>CTT	p.P385L		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	385	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GCATTCCGTCCTGCTTCCAAG	0.393													20	70					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29044306	29044306	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29044306C>T	uc002kws.2	+	9	1341	c.1232C>T	c.(1231-1233)GCC>GTC	p.A411V		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	411	Cadherin 4.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACATATCAAGCCATCGATGAG	0.358													20	70					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29049290	29049290	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29049290C>T	uc002kws.2	+	12	1984	c.1875C>T	c.(1873-1875)CTC>CTT	p.L625L		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	625	Helical; (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GCCTGCTGCTCCTTGGTCTCC	0.597													29	68					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29056049	29056049	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29056049C>T	uc002kws.2	+	16	2935	c.2826C>T	c.(2824-2826)TCC>TCT	p.S942S	DSG3_uc002kwt.2_Silent_p.S224S	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	942	Cytoplasmic (Potential).|Desmoglein repeat 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding	p.S942F(1)		skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CTTCTGGTTCCCTCGTGCAAC	0.507													31	106					0	0	1	0	0
DSG2	1829	broad.mit.edu	37	18	29104780	29104780	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29104780G>A	uc002kwu.3	+	8	1131	c.943G>A	c.(943-945)GGA>AGA	p.G315R		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	315	Extracellular (Potential).|Cadherin 3.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			ATTTGCATCAGGAAATGAAGG	0.368													12	79					0	0	1	0	0
DSG2	1829	broad.mit.edu	37	18	29121164	29121164	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29121164C>T	uc002kwu.3	+	13	2076	c.1888C>T	c.(1888-1890)CTT>TTT	p.L630F		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	630	Helical; (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			AGTGGTACCACTTTTACTGCT	0.423													25	74					0	0	1	0	0
DSG2	1829	broad.mit.edu	37	18	29121194	29121194	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29121194G>A	uc002kwu.3	+	13	2106	c.1918G>A	c.(1918-1920)GGC>AGC	p.G640S		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	640	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TTGCGGAAAGGGCGCCAAAGG	0.428													27	71					0	0	1	0	0
DSG2	1829	broad.mit.edu	37	18	29122786	29122786	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29122786G>A	uc002kwu.3	+	14	2493	c.2305G>A	c.(2305-2307)GAA>AAA	p.E769K	uc002kwv.3_Intron	NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	769	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TGCACTGAACGAAGAATTCTT	0.478													23	72					0	0	1	0	0
MCART2	147407	broad.mit.edu	37	18	29340392	29340392	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29340392C>T	uc002kxa.2	-	1	452	c.233G>A	c.(232-234)CGA>CAA	p.R78Q		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	78	Solcar 1.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			ATACAAATTTCGAAATCCATC	0.463													43	85					0	0	1	0	0
KIAA1012	22878	broad.mit.edu	37	18	29493334	29493334	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29493334G>A	uc002kxc.3	-	5	1133	c.769C>T	c.(769-771)CAG>TAG	p.Q257*	KIAA1012_uc002kxb.3_Nonsense_Mutation_p.Q203*|KIAA1012_uc002kxd.3_RNA|KIAA1012_uc002kxe.2_Nonsense_Mutation_p.Q257*	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	257					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						ACATATACCTGGTTTTGAATA	0.294													8	61					0	0	1	0	0
RNF125	54941	broad.mit.edu	37	18	29645969	29645969	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29645969C>T	uc002kxf.1	+	5	991	c.609C>T	c.(607-609)TTC>TTT	p.F203F		NM_017831	NP_060301	Q96EQ8	RN125_HUMAN	ring finger protein 125	203					negative regulation of type I interferon production	intracellular	ligase activity|zinc ion binding				0						ATGATGATTTCATAGTAAGTA	0.328													34	82					0	0	1	0	0
MEP1B	4225	broad.mit.edu	37	18	29787322	29787322	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29787322G>A	uc002kxj.3	+	8	702	c.655G>A	c.(655-657)GGA>AGA	p.G219R		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	219	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						ATTCCAAAATGGAACAGAGCC	0.393													9	23					0	0	1	0	0
MEP1B	4225	broad.mit.edu	37	18	29793279	29793279	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29793279G>A	uc002kxj.3	+	11	1383	c.1336G>A	c.(1336-1338)GGA>AGA	p.G446R		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	446	Extracellular (Potential).|MATH.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						CAGCCCAAATGGAACTCTGTA	0.408													13	26					0	0	1	0	0
MEP1B	4225	broad.mit.edu	37	18	29793298	29793298	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29793298C>T	uc002kxj.3	+	11	1402	c.1355C>T	c.(1354-1356)CCA>CTA	p.P452L		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	452	Extracellular (Potential).|MATH.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						TATAGCCCTCCATTTTACTCT	0.408													4	31					0	0	1	0	0
MEP1B	4225	broad.mit.edu	37	18	29793396	29793396	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29793396G>A	uc002kxj.3	+	11	1500	c.1453G>A	c.(1453-1455)GAT>AAT	p.D485N		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	485	Extracellular (Potential).|MATH.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						TGGAGCCAATGATGATCAATT	0.408													17	27					0	0	1	0	0
FAM59A	64762	broad.mit.edu	37	18	29848108	29848108	+	Missense_Mutation	SNP	G	A	A	rs139726967		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29848108G>A	uc002kxl.2	-	6	2413	c.2357C>T	c.(2356-2358)CCG>CTG	p.P786L	FAM59A_uc002kxk.1_Missense_Mutation_p.P785L	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	786										ovary(1)|skin(1)	2						GAGATGGAGCGGAGATGAGAA	0.547													20	34					0	0	1	0	0
FAM59A	64762	broad.mit.edu	37	18	29848378	29848378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29848378G>A	uc002kxl.2	-	6	2143	c.2087C>T	c.(2086-2088)CCC>CTC	p.P696L	FAM59A_uc002kxk.1_Missense_Mutation_p.P695L	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	696										ovary(1)|skin(1)	2						GGCTGACTTGGGACAACCAGA	0.547													42	80					0	0	1	0	0
FAM59A	64762	broad.mit.edu	37	18	29867071	29867071	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:29867071G>A	uc002kxl.2	-	4	1545	c.1489C>T	c.(1489-1491)CCT>TCT	p.P497S	FAM59A_uc002kxk.1_Missense_Mutation_p.P497S	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	497										ovary(1)|skin(1)	2						AGAGTCCCAGGGATGGGAAGA	0.507													43	89					0	0	1	0	0
WBP11P1	441818	broad.mit.edu	37	18	30091926	30091926	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30091926G>A	uc010dmc.2	+	1		c.301G>A				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						AACAGCTCATGATGGTTTGAG	0.448													20	55					0	0	1	0	0
WBP11P1	441818	broad.mit.edu	37	18	30092458	30092458	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30092458C>T	uc010dmc.2	+	1		c.833C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						GATGTATGGCCGTAAAGTGGG	0.532													53	103					0	0	1	0	0
WBP11P1	441818	broad.mit.edu	37	18	30092833	30092833	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30092833G>A	uc010dmc.2	+	1		c.1208G>A				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						GGAGGGACGGGAAGTAGAGGA	0.423													14	84					0	0	1	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093066	30093066	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30093066C>T	uc010dmc.2	+	1		c.1441C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						TGGACCACCTCCAGGAGCTCC	0.582													5	11					0	0	1	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093412	30093412	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30093412C>T	uc010dmc.2	+	1		c.1787C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						AGCTCCCTTGCTGAACCCTGA	0.527													12	120					0	0	1	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093446	30093446	+	RNA	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30093446T>G	uc010dmc.2	+	1		c.1821T>G				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						CCACCCGGCTTGATTCAGCGA	0.542													91	154					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30257204	30257204	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30257204G>A	uc002kxm.1	-	8	2066	c.1678C>T	c.(1678-1680)CGA>TGA	p.R560*	KLHL14_uc010dmd.1_Nonsense_Mutation_p.R109*	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	560	Kelch 5.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						GGGCCACTTCGACCCTCCAAA	0.478													30	85					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30260457	30260457	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30260457C>T	uc002kxm.1	-	6	1732	c.1344G>A	c.(1342-1344)ACG>ACA	p.T448T	KLHL14_uc010dmd.1_5'UTR	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	448	Kelch 3.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						GCCATTCATTCGTTTCTAGGT	0.473													36	78					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30350066	30350066	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30350066G>A	uc002kxm.1	-	2	877	c.489C>T	c.(487-489)ATC>ATT	p.I163I		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	163						cytosol|endoplasmic reticulum membrane				ovary(1)	1						GGATGTGCAGGATCTTGCTGA	0.622													19	89					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30350440	30350440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30350440C>T	uc002kxm.1	-	2	503	c.115G>A	c.(115-117)GCC>ACC	p.A39T		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	39	BTB.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						TGGCCCTGGGCCGTCAGGGTC	0.652													8	60					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30350522	30350522	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30350522G>A	uc002kxm.1	-	2	421	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	11						cytosol|endoplasmic reticulum membrane				ovary(1)	1						GGCTGGGGTCGAAGGTGGAGG	0.582													16	62					0	0	1	0	0
C18orf34	374864	broad.mit.edu	37	18	30795606	30795606	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30795606C>T	uc002kxn.2	-	18	2128	c.1986G>A	c.(1984-1986)ATG>ATA	p.M662I	C18orf34_uc010dme.1_Missense_Mutation_p.M176I|C18orf34_uc010xbr.1_Missense_Mutation_p.M662I|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.M624I|C18orf34_uc002kxp.2_Missense_Mutation_p.M662I	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	662	Potential.									ovary(1)	1						CATAAAAAATCATTGTCTTAC	0.254													4	33					0	0	1	0	0
C18orf34	374864	broad.mit.edu	37	18	30803094	30803094	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30803094G>A	uc002kxn.2	-	17	2050	c.1908C>T	c.(1906-1908)ACC>ACT	p.T636T	C18orf34_uc010dme.1_Silent_p.T150T|C18orf34_uc010xbr.1_Silent_p.T636T|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Intron|C18orf34_uc002kxp.2_Silent_p.T636T	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	636										ovary(1)	1						ATGCATCAAGGGTTTTCTTCC	0.279													8	43					0	0	1	0	0
C18orf34	374864	broad.mit.edu	37	18	30825370	30825370	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30825370C>T	uc002kxn.2	-	14	1574	c.1432G>A	c.(1432-1434)GAA>AAA	p.E478K	C18orf34_uc010dme.1_5'UTR|C18orf34_uc010xbr.1_Missense_Mutation_p.E478K|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.E478K|C18orf34_uc002kxp.2_Missense_Mutation_p.E478K	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	478										ovary(1)	1						ATTTCAGATTCGTATTTTGAT	0.254													6	14					0	0	1	0	0
C18orf34	374864	broad.mit.edu	37	18	30926222	30926222	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30926222G>A	uc002kxn.2	-	8	753	c.611C>T	c.(610-612)TCT>TTT	p.S204F	C18orf34_uc010xbr.1_Missense_Mutation_p.S204F|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.S204F|C18orf34_uc002kxp.2_Missense_Mutation_p.S204F	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	204	Potential.									ovary(1)	1						GACTGACCAAGAGTCAATTTT	0.368													34	102					0	0	1	0	0
C18orf34	374864	broad.mit.edu	37	18	30926323	30926323	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:30926323G>A	uc002kxn.2	-	8	652	c.510C>T	c.(508-510)GCC>GCT	p.A170A	C18orf34_uc010xbr.1_Silent_p.A170A|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Silent_p.A170A|C18orf34_uc002kxp.2_Silent_p.A170A	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	170	Potential.									ovary(1)	1						TGAGACGAATGGCCTCTGAGA	0.338													34	91					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31241586	31241586	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31241586C>T	uc010dmg.1	+	5	417	c.362C>T	c.(361-363)TCG>TTG	p.S121L	ASXL3_uc002kxq.2_5'UTR	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	121					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CTAGTTTGTTCGAAGCAGGTA	0.373													4	14					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31318615	31318615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31318615C>T	uc010dmg.1	+	11	1302	c.1247C>T	c.(1246-1248)CCT>CTT	p.P416L	ASXL3_uc002kxq.2_Missense_Mutation_p.P123L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	416					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TCTCCAGAGCCTGGTTTCTGT	0.453													17	38					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31322871	31322871	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31322871G>A	uc010dmg.1	+	12	3114	c.3059G>A	c.(3058-3060)GGG>GAG	p.G1020E	ASXL3_uc002kxq.2_Missense_Mutation_p.G727E	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1020					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TCCAAAATTGGGCCACCTTTT	0.453													7	36					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31324936	31324936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31324936G>A	uc010dmg.1	+	12	5179	c.5124G>A	c.(5122-5124)ATG>ATA	p.M1708I	ASXL3_uc002kxq.2_Missense_Mutation_p.M1415I	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1708					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CACAGAACATGAAAGCTTCCA	0.552													30	69					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31325159	31325159	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31325159C>T	uc010dmg.1	+	12	5402	c.5347C>T	c.(5347-5349)CAA>TAA	p.Q1783*	ASXL3_uc002kxq.2_Nonsense_Mutation_p.Q1490*	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1783					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATTGCCTCTTCAAACTACCTC	0.512													20	51					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31325546	31325546	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31325546C>T	uc010dmg.1	+	12	5789	c.5734C>T	c.(5734-5736)CAT>TAT	p.H1912Y	ASXL3_uc002kxq.2_Missense_Mutation_p.H1619Y	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1912					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GAACCTATTTCATGTTGACAA	0.527													30	133					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31325800	31325800	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31325800G>A	uc010dmg.1	+	12	6043	c.5988G>A	c.(5986-5988)ATG>ATA	p.M1996I	ASXL3_uc002kxq.2_Missense_Mutation_p.M1703I	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1996					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATATGCCCATGAAAGAAGGTG	0.383													10	128					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31325888	31325888	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31325888C>T	uc010dmg.1	+	12	6131	c.6076C>T	c.(6076-6078)CCT>TCT	p.P2026S	ASXL3_uc002kxq.2_Missense_Mutation_p.P1733S	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2026	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						tccccctccccctccaccctt	0.264													6	11					0	0	1	0	0
NOL4	8715	broad.mit.edu	37	18	31432838	31432838	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31432838C>T	uc010dmi.2	-	11	2114	c.1885G>A	c.(1885-1887)GAA>AAA	p.E629K	NOL4_uc010xbs.1_Missense_Mutation_p.E344K|NOL4_uc002kxr.3_Missense_Mutation_p.E401K|NOL4_uc010xbt.1_Missense_Mutation_p.E555K|NOL4_uc010dmh.2_Missense_Mutation_p.E491K|NOL4_uc010xbu.1_Missense_Mutation_p.E565K|NOL4_uc002kxt.3_Missense_Mutation_p.E527K	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	629						nucleolus	RNA binding			ovary(3)	3						TTTTCCAGTTCATCTGCAGAT	0.418													6	65					0	0	1	0	0
NOL4	8715	broad.mit.edu	37	18	31463235	31463235	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31463235G>A	uc010dmi.2	-	10	1925	c.1696C>T	c.(1696-1698)CTA>TTA	p.L566L	NOL4_uc010xbs.1_Silent_p.L281L|NOL4_uc002kxr.3_Silent_p.L338L|NOL4_uc010xbt.1_Silent_p.L492L|NOL4_uc010dmh.2_Silent_p.L428L|NOL4_uc010xbu.1_Silent_p.L502L|NOL4_uc002kxt.3_Silent_p.L464L	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	566						nucleolus	RNA binding			ovary(3)	3						TTCAGATTTAGCAGACCCCCT	0.338													80	194					0	0	1	0	0
NOL4	8715	broad.mit.edu	37	18	31523087	31523087	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31523087G>A	uc010dmi.2	-	9	1713	c.1484C>T	c.(1483-1485)TCA>TTA	p.S495L	NOL4_uc010xbs.1_Missense_Mutation_p.S210L|NOL4_uc002kxr.3_Missense_Mutation_p.S267L|NOL4_uc010xbt.1_Missense_Mutation_p.S421L|NOL4_uc010dmh.2_Missense_Mutation_p.S357L|NOL4_uc010xbu.1_Missense_Mutation_p.S431L|NOL4_uc002kxt.3_Intron|NOL4_uc010xbv.1_Missense_Mutation_p.S180L	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	495						nucleolus	RNA binding			ovary(3)	3						CTCACAAGCTGAAGCCAAGAT	0.423													20	81					0	0	1	0	0
NOL4	8715	broad.mit.edu	37	18	31538324	31538324	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31538324C>T	uc010dmi.2	-	7	1344	c.1115G>A	c.(1114-1116)GGA>GAA	p.G372E	NOL4_uc010xbs.1_Missense_Mutation_p.G87E|NOL4_uc002kxr.3_Missense_Mutation_p.G208E|NOL4_uc010xbt.1_Missense_Mutation_p.G298E|NOL4_uc010dmh.2_Missense_Mutation_p.G298E|NOL4_uc010xbu.1_Missense_Mutation_p.G372E|NOL4_uc002kxt.3_Missense_Mutation_p.G372E|NOL4_uc010xbv.1_Missense_Mutation_p.G121E|NOL4_uc010xbw.1_Missense_Mutation_p.G258E	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	372						nucleolus	RNA binding			ovary(3)	3						GTCCTCAGCTCCTCGGTCTAC	0.463													34	204					0	0	1	0	0
NOL4	8715	broad.mit.edu	37	18	31709925	31709925	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:31709925G>A	uc010dmi.2	-	2	553	c.324C>T	c.(322-324)TTC>TTT	p.F108F	NOL4_uc002kxr.3_5'UTR|NOL4_uc010xbt.1_Silent_p.F34F|NOL4_uc010dmh.2_Silent_p.F34F|NOL4_uc010xbu.1_Silent_p.F108F|NOL4_uc002kxt.3_Silent_p.F108F|NOL4_uc010xbw.1_5'UTR	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	108						nucleolus	RNA binding			ovary(3)	3						TAATGTCAAAGAAATCTTCAA	0.393													30	81					0	0	1	0	0
DTNA	1837	broad.mit.edu	37	18	32459583	32459583	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:32459583C>T	uc010dmn.1	+	19	1982	c.1981C>T	c.(1981-1983)CCC>TCC	p.P661S	DTNA_uc002kxw.2_Missense_Mutation_p.P604S|DTNA_uc010dmj.2_Missense_Mutation_p.P601S|DTNA_uc002kxz.2_Missense_Mutation_p.P608S|DTNA_uc002kxy.2_Missense_Mutation_p.P601S|DTNA_uc010xby.1_Missense_Mutation_p.P351S|DTNA_uc010xbz.1_Missense_Mutation_p.P370S|DTNA_uc010xca.1_Missense_Mutation_p.P313S|DTNA_uc002kye.2_Missense_Mutation_p.P309S	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	661					neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						GGATCTTGTTCCCTCACCAAC	0.448													12	49					0	0	1	0	0
INO80C	125476	broad.mit.edu	37	18	33060487	33060487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:33060487G>A	uc002kyy.3	-	2	314	c.197C>T	c.(196-198)CCC>CTC	p.P66L	INO80C_uc002kyw.1_Missense_Mutation_p.P66L|INO80C_uc002kyx.3_Missense_Mutation_p.P11L|INO80C_uc010dmt.2_Missense_Mutation_p.P102L	NM_194281	NP_919257	Q6PI98	IN80C_HUMAN	Ies6-similar protein isoform 2	66					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex|MLL1 complex					0						AAACTCAGAGGGCACCATTTT	0.408													17	152					0	0	1	0	0
MOCOS	55034	broad.mit.edu	37	18	33785099	33785099	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:33785099C>T	uc002kzq.3	+	6	1101	c.1078C>T	c.(1078-1080)CTG>TTG	p.L360L		NM_017947	NP_060417	Q96EN8	MOCOS_HUMAN	molybdenum cofactor sulfurase	360					Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	lyase activity|Mo-molybdopterin cofactor sulfurase activity|molybdenum ion binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	CTACGTGGCCCTGTCCTCTCT	0.473													11	100					0	0	1	0	0
MOCOS	55034	broad.mit.edu	37	18	33785177	33785177	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:33785177C>T	uc002kzq.3	+	6	1179	c.1156C>T	c.(1156-1158)CAG>TAG	p.Q386*		NM_017947	NP_060417	Q96EN8	MOCOS_HUMAN	molybdenum cofactor sulfurase	386					Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	lyase activity|Mo-molybdopterin cofactor sulfurase activity|molybdenum ion binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	CCCTGAGGTTCAGGGCCCAAT	0.498													55	84					0	0	1	0	0
KIAA1328	57536	broad.mit.edu	37	18	34740344	34740344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:34740344G>A	uc002kzz.2	+	8	1436	c.1414G>A	c.(1414-1416)GGG>AGG	p.G472R	KIAA1328_uc002lab.2_Missense_Mutation_p.G224R|KIAA1328_uc002lac.1_Missense_Mutation_p.G331R|KIAA1328_uc010dnc.1_RNA	NM_020776	NP_065827	Q86T90	K1328_HUMAN	hypothetical protein LOC57536	472										central_nervous_system(1)	1				COAD - Colon adenocarcinoma(74;0.195)		ACCCCAAAGAGGTAAGTTTAA	0.408													11	39					0	0	1	0	0
MIR924	100126323	broad.mit.edu	37	18	37202102	37202102	+	RNA	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:37202102T>C	hsa-mir-924|MI0005716	-			c.38T>C			LOC647946_uc010xcj.1_Intron|LOC647946_uc002lal.1_Intron																	0						agactctaggttggatggccc	0.139													19	60					0	0	1	0	0
PIK3C3	5289	broad.mit.edu	37	18	39542544	39542544	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:39542544C>T	uc002lap.2	+	3	406	c.348C>T	c.(346-348)CCC>CCT	p.P116P	PIK3C3_uc010xcl.1_Silent_p.P53P|PIK3C3_uc002lao.2_Silent_p.P116P	NM_002647	NP_002638	Q8NEB9	PK3C3_HUMAN	catalytic phosphatidylinositol 3-kinase 3	116					cell cycle|cytokinesis|fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	midbody|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|protein binding			lung(8)|ovary(1)|breast(1)	10						TGTATGGTCCCGGAAAAGCAG	0.483										TSP Lung(28;0.18)			22	83					0	0	1	0	0
RIT2	6014	broad.mit.edu	37	18	40503539	40503539	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:40503539G>A	uc002lav.2	-	4	597	c.424C>T	c.(424-426)CAG>TAG	p.Q142*	RIT2_uc010dnf.2_Nonsense_Mutation_p.Q142*	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	142					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						GCACTCACCTGGCGGAACTGT	0.458													42	206					0	0	1	0	0
RIT2	6014	broad.mit.edu	37	18	40695469	40695469	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:40695469C>T	uc002lav.2	-	1	189	c.16G>A	c.(16-18)GAA>AAA	p.E6K	RIT2_uc010dnf.2_Missense_Mutation_p.E6K	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	6					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						CAGCTGGCTTCATTTTCTACC	0.517													23	88					0	0	1	0	0
SYT4	6860	broad.mit.edu	37	18	40853713	40853713	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:40853713C>T	uc002law.2	-	2	1050	c.681G>A	c.(679-681)GGG>GGA	p.G227G	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Silent_p.G209G|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	227	Phospholipid binding (Probable).|C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						TGTAGGGTATCCCATAGAATG	0.398													33	105					0	0	1	0	0
SETBP1	26040	broad.mit.edu	37	18	42529856	42529856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:42529856G>A	uc010dni.2	+	4	847	c.551G>A	c.(550-552)AGG>AAG	p.R184K		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	184						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GCTTACGAGAGGCCCCAGAAA	0.413									Schinzel-Giedion_syndrome				16	38					0	0	1	0	0
SETBP1	26040	broad.mit.edu	37	18	42531877	42531877	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:42531877G>A	uc010dni.2	+	4	2868	c.2572G>A	c.(2572-2574)GAG>AAG	p.E858K		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	858						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CCCTGTGAGCGAGTCCCACAG	0.572									Schinzel-Giedion_syndrome				13	31					0	0	1	0	0
SETBP1	26040	broad.mit.edu	37	18	42531962	42531962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:42531962C>T	uc010dni.2	+	4	2953	c.2657C>T	c.(2656-2658)TCA>TTA	p.S886L		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	886						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GAGAAGAGCTCAGAATCCCGA	0.582									Schinzel-Giedion_syndrome				7	33					0	0	1	0	0
SLC14A2	8170	broad.mit.edu	37	18	43205702	43205702	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43205702G>A	uc010dnj.2	+	4	526	c.205G>A	c.(205-207)GAA>AAA	p.E69K	SLC14A2_uc002lbb.2_Missense_Mutation_p.E69K|SLC14A2_uc002lbe.2_Missense_Mutation_p.E69K	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	69						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						AAAGCTCAATGAAAGGAGTAA	0.498													14	46					0	0	1	0	0
SLC14A2	8170	broad.mit.edu	37	18	43212399	43212399	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43212399C>T	uc010dnj.2	+	6	927	c.606C>T	c.(604-606)TAC>TAT	p.Y202Y	SLC14A2_uc002lbb.2_Silent_p.Y202Y|SLC14A2_uc002lbe.2_Silent_p.Y202Y	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	202						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						AGTTAGACTACTACTGGTGGC	0.552													34	151					0	0	1	0	0
SLC14A2	8170	broad.mit.edu	37	18	43221192	43221192	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43221192C>T	uc010dnj.2	+	9	1331	c.1010C>T	c.(1009-1011)CCC>CTC	p.P337L	SLC14A2_uc002lbb.2_Missense_Mutation_p.P337L|SLC14A2_uc002lbe.2_Missense_Mutation_p.P337L	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	337						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GTGGCCACACCCTTCGAGACC	0.572													19	42					0	0	1	0	0
SLC14A2	8170	broad.mit.edu	37	18	43243749	43243749	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43243749G>A	uc010dnj.2	+	12	1673	c.1352_splice	c.e12-1	p.G451_splice	SLC14A2_uc002lbe.2_Splice_Site_p.G451_splice	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),							apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CCCCTGGCTAGGAGGCGGTGG	0.582													17	32					0	0	1	0	0
SLC14A2	8170	broad.mit.edu	37	18	43243836	43243836	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43243836C>T	uc010dnj.2	+	12	1759	c.1438C>T	c.(1438-1440)CAC>TAC	p.H480Y	SLC14A2_uc002lbe.2_Missense_Mutation_p.H480Y	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	480						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GAGTGTATTTCACATCGAGTG	0.532													11	26					0	0	1	0	0
SLC14A2	8170	broad.mit.edu	37	18	43246125	43246125	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43246125G>A	uc010dnj.2	+	13	1819	c.1498G>A	c.(1498-1500)GAA>AAA	p.E500K	SLC14A2_uc002lbe.2_Missense_Mutation_p.E500K	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	500						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CGAACACCAGGAAAGACAAAA	0.507											OREG0024946	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	86					0	0	1	0	0
SLC14A2	8170	broad.mit.edu	37	18	43247047	43247047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43247047G>A	uc010dnj.2	+	14	2026	c.1705G>A	c.(1705-1707)GAG>AAG	p.E569K	SLC14A2_uc002lbe.2_Missense_Mutation_p.E569K	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	569						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GGAGTGTGGAGAGGGACTTAA	0.507													5	37					0	0	1	0	0
SLC14A2	8170	broad.mit.edu	37	18	43252892	43252892	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43252892G>A	uc010dnj.2	+	18	2578	c.2257G>A	c.(2257-2259)GGC>AGC	p.G753S	SLC14A2_uc002lbe.2_Missense_Mutation_p.G753S	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	753						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CGTTGGAATTGGCCAAGTGTA	0.478													31	100					0	0	1	0	0
SLC14A1	6563	broad.mit.edu	37	18	43310378	43310378	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43310378C>T	uc010xcn.1	+	4	412	c.93C>T	c.(91-93)TTC>TTT	p.F31F	SLC14A1_uc010dnk.2_Silent_p.F87F|SLC14A1_uc002lbf.3_Silent_p.F31F|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Intron|SLC14A1_uc002lbh.3_Intron|SLC14A1_uc002lbi.3_Intron|SLC14A1_uc002lbj.3_Silent_p.F87F|SLC14A1_uc002lbk.3_Silent_p.F31F	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	31						integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						GAAGGTGCTTCCCCAAAGCTC	0.488													32	84					0	0	1	0	0
SLC14A1	6563	broad.mit.edu	37	18	43314241	43314241	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43314241C>T	uc010xcn.1	+	6	663	c.344C>T	c.(343-345)TCA>TTA	p.S115L	SLC14A1_uc010dnk.2_Missense_Mutation_p.S171L|SLC14A1_uc002lbf.3_Missense_Mutation_p.S115L|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Missense_Mutation_p.S10L|SLC14A1_uc002lbh.3_Missense_Mutation_p.S7L|SLC14A1_uc002lbi.3_5'UTR|SLC14A1_uc002lbj.3_Missense_Mutation_p.S171L|SLC14A1_uc002lbk.3_Missense_Mutation_p.S115L	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	115						integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						CCCCACAGGTCATTAATAGCA	0.463													48	112					0	0	1	0	0
SLC14A1	6563	broad.mit.edu	37	18	43319611	43319611	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43319611C>T	uc010xcn.1	+	9	1249	c.930C>T	c.(928-930)CTC>CTT	p.L310L	SLC14A1_uc010dnk.2_Silent_p.L366L|SLC14A1_uc002lbf.3_Silent_p.L310L|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Silent_p.L205L|SLC14A1_uc002lbh.3_Silent_p.L202L|SLC14A1_uc002lbi.3_Silent_p.L178L|SLC14A1_uc002lbj.3_Silent_p.L366L|SLC14A1_uc002lbk.3_Silent_p.L310L	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	310	Helical; (Potential).					integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						AAACCCACCTCCTGGCTCTTG	0.478													28	69					0	0	1	0	0
SLC14A1	6563	broad.mit.edu	37	18	43319621	43319621	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43319621G>A	uc010xcn.1	+	9	1259	c.940G>A	c.(940-942)GGC>AGC	p.G314S	SLC14A1_uc010dnk.2_Missense_Mutation_p.G370S|SLC14A1_uc002lbf.3_Missense_Mutation_p.G314S|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Missense_Mutation_p.G209S|SLC14A1_uc002lbh.3_Missense_Mutation_p.G206S|SLC14A1_uc002lbi.3_Missense_Mutation_p.G182S|SLC14A1_uc002lbj.3_Missense_Mutation_p.G370S|SLC14A1_uc002lbk.3_Missense_Mutation_p.G314S	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	314	Helical; (Potential).					integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						CCTGGCTCTTGGCTGTGGTGA	0.458													23	64					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43492321	43492321	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43492321G>A	uc002lbm.2	-	22	4017	c.3917C>T	c.(3916-3918)CCC>CTC	p.P1306L	KIAA1632_uc002lbo.1_Missense_Mutation_p.P1306L|KIAA1632_uc010xcq.1_5'UTR|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.P181L	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1306					autophagy						0						TGGCAGGAGGGGGTGATCAGA	0.557													10	75					0	0	1	0	0
PSTPIP2	9050	broad.mit.edu	37	18	43591154	43591154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43591154C>T	uc002lbp.3	-	5	443	c.347G>A	c.(346-348)CGA>CAA	p.R116Q	PSTPIP2_uc002lbq.3_Missense_Mutation_p.R116Q	NM_024430	NP_077748	Q9H939	PPIP2_HUMAN	proline-serine-threonine phosphatase interacting	116	Potential.					membrane				ovary(1)	1						AACCTTTTTTCGTTGTAGTTT	0.428													16	198					0	0	1	0	0
PSTPIP2	9050	broad.mit.edu	37	18	43591196	43591196	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43591196G>A	uc002lbp.3	-	5	401	c.305C>T	c.(304-306)GCC>GTC	p.A102V	PSTPIP2_uc002lbq.3_Missense_Mutation_p.A102V	NM_024430	NP_077748	Q9H939	PPIP2_HUMAN	proline-serine-threonine phosphatase interacting	102	Potential.					membrane				ovary(1)	1						CATCTTCCTGGCCTCTTCTCT	0.373													75	218					0	0	1	0	0
ATP5A1	498	broad.mit.edu	37	18	43678154	43678154	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43678154G>A	uc002lbr.1	-	1	134	c.44C>T	c.(43-45)CCT>CTT	p.P15L	ATP5A1_uc010dnl.1_5'UTR|ATP5A1_uc002lbs.1_5'UTR|ATP5A1_uc002lbt.1_Missense_Mutation_p.P15L|ATP5A1_uc010dnm.1_RNA	NM_004046	NP_004037	P25705	ATPA_HUMAN	ATP synthase, H+ transporting, mitochondrial F1	15					ATP hydrolysis coupled proton transport|embryo development|lipid metabolic process|negative regulation of endothelial cell proliferation|respiratory electron transport chain	mitochondrial matrix|plasma membrane	ATP binding|eukaryotic cell surface binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|MHC class I protein binding|proton-transporting ATPase activity, rotational mechanism				0						GGCCCGCCGAGGAAGGGCGCG	0.711													11	31					0	0	1	0	0
HAUS1	115106	broad.mit.edu	37	18	43698189	43698189	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43698189C>T	uc002lbu.2	+	3	328	c.248C>T	c.(247-249)TCC>TTC	p.S83F	HAUS1_uc002lbv.2_Missense_Mutation_p.S7F	NM_138443	NP_612452	Q96CS2	HAUS1_HUMAN	coiled-coil domain containing 5	83					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole				ovary(1)	1						GTGAATTTTTCCCCCGCCAAT	0.403													35	107					0	0	1	0	0
C18orf25	147339	broad.mit.edu	37	18	43796275	43796276	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43796275_43796276CC>TT	uc002lbw.2	+	2	808_809	c.429_430CC>TT	c.(427-432)TCCCGA>TCTTGA	p.R144*	C18orf25_uc002lbx.2_Nonsense_Mutation_p.R144*	NM_145055	NP_659492	Q96B23	CR025_HUMAN	ARKadia-like 1 isoform a	144										central_nervous_system(2)	2						CTAGGCGGTCCCGATCTGAAAG	0.535													7	100					0	0	1	0	0
C18orf25	147339	broad.mit.edu	37	18	43796350	43796350	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:43796350C>T	uc002lbw.2	+	2	883	c.504C>T	c.(502-504)GTC>GTT	p.V168V	C18orf25_uc002lbx.2_Silent_p.V168V	NM_145055	NP_659492	Q96B23	CR025_HUMAN	ARKadia-like 1 isoform a	168										central_nervous_system(2)	2						ATGGCCGAGTCGCCAAGGTTA	0.517													20	74					0	0	1	0	0
RNF165	494470	broad.mit.edu	37	18	44013158	44013158	+	Missense_Mutation	SNP	C	T	T	rs144036424		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44013158C>T	uc002lcb.1	+	2	118	c.67C>T	c.(67-69)CCC>TCC	p.P23S	RNF165_uc002lby.1_5'UTR|RNF165_uc010dnn.1_Intron	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	23							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		TCCAGGTGCCCCCTTTCAAAG	0.677													13	22					0	0	1	0	0
RNF165	494470	broad.mit.edu	37	18	44015303	44015303	+	Silent	SNP	C	T	T	rs61732298		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44015303C>T	uc002lcb.1	+	3	480	c.429C>T	c.(427-429)TTC>TTT	p.F143F	RNF165_uc002lby.1_Silent_p.F76F|RNF165_uc010dnn.1_Intron	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	143							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		ATCCCAGCTTCGACTTCGGCC	0.562													17	57					0	0	1	0	0
RNF165	494470	broad.mit.edu	37	18	44030298	44030298	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44030298C>T	uc002lcb.1	+	5	706	c.655C>T	c.(655-657)CAC>TAC	p.H219Y	RNF165_uc002lby.1_Missense_Mutation_p.H152Y|RNF165_uc010dnn.1_Missense_Mutation_p.H15Y	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	219							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		CCCTCAGCTTCACTTCCTTGC	0.522													20	100					0	0	1	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44260327	44260327	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44260327G>A	uc002lcj.1	-	7	1377	c.809C>T	c.(808-810)TCG>TTG	p.S270L	ST8SIA5_uc002lci.1_Missense_Mutation_p.S117L|ST8SIA5_uc010xcy.1_Missense_Mutation_p.S306L|ST8SIA5_uc010xcz.1_Missense_Mutation_p.S239L	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	270	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						AGCTTGCGGCGATTCGAAGTC	0.622													9	18					0	0	1	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44261954	44261954	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44261954G>A	uc002lcj.1	-	6	1211	c.643C>T	c.(643-645)CCC>TCC	p.P215S	ST8SIA5_uc002lci.1_Missense_Mutation_p.P62S|ST8SIA5_uc010xcy.1_Missense_Mutation_p.P251S|ST8SIA5_uc010xcz.1_Missense_Mutation_p.P184S	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	215	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						ATGATGCTGGGGTTCACAGTG	0.393													11	29					0	0	1	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44272158	44272158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44272158C>T	uc002lcj.1	-	3	853	c.285G>A	c.(283-285)ATG>ATA	p.M95I	ST8SIA5_uc002lci.1_5'UTR|ST8SIA5_uc010xcy.1_Missense_Mutation_p.M131I|ST8SIA5_uc010xcz.1_Missense_Mutation_p.M64I|ST8SIA5_uc010dno.1_Missense_Mutation_p.M131I	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	95	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						CAGAGATGTTCATCGCCCATT	0.507													21	59					0	0	1	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559623	44559623	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44559623C>T	uc002lcr.1	-	1	2366	c.2013G>A	c.(2011-2013)GAG>GAA	p.E671E	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	671					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTGGCTTGATCTCCCCATTTT	0.458													35	96					0	0	1	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559839	44559839	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44559839C>T	uc002lcr.1	-	1	2150	c.1797G>A	c.(1795-1797)CAG>CAA	p.Q599Q	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	599	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TTTTGTTTTCCTGTGGCTTTT	0.493													45	106					0	0	1	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560363	44560363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44560363C>T	uc002lcr.1	-	1	1626	c.1273G>A	c.(1273-1275)GAT>AAT	p.D425N	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	425					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TTAGCCGAATCCCAGGACTCA	0.547													41	98					0	0	1	0	0
TCEB3B	51224	broad.mit.edu	37	18	44561305	44561305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44561305C>T	uc002lcr.1	-	1	684	c.331G>A	c.(331-333)GGC>AGC	p.G111S	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	111					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TCTGGGAAGCCCCAGGCCTTT	0.662													34	94					0	0	1	0	0
TCEB3B	51224	broad.mit.edu	37	18	44561402	44561402	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44561402G>A	uc002lcr.1	-	1	587	c.234C>T	c.(232-234)CTC>CTT	p.L78L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	78	TFIIS N-terminal.				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TTCGGTCCACGAGCACCAGCT	0.642													18	45					0	0	1	0	0
KATNAL2	83473	broad.mit.edu	37	18	44584634	44584634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:44584634C>T	uc002lco.2	+	4	339	c.145C>T	c.(145-147)CCC>TCC	p.P49S	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lcp.3_Missense_Mutation_p.P9S	NM_031303	NP_112593	Q8IYT4	KATL2_HUMAN	katanin p60 subunit A-like 2	121						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						TCAAAATCTTCCCAAGATCAA	0.458													32	71					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45555787	45555787	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:45555787C>T	uc002lda.2	-	2	1720	c.1704G>A	c.(1702-1704)AGG>AGA	p.R568R	ZBTB7C_uc002ldb.2_Silent_p.R568R|ZBTB7C_uc010dnu.2_Silent_p.R577R|ZBTB7C_uc010dnv.2_Silent_p.R590R|ZBTB7C_uc010dnw.2_Silent_p.R568R	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	568						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						CCCCCGCGTTCCTCTCAGCCT	0.736													5	10					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45556204	45556204	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:45556204G>A	uc002lda.2	-	2	1303	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	ZBTB7C_uc002ldb.2_Silent_p.F429F|ZBTB7C_uc010dnu.2_Silent_p.F438F|ZBTB7C_uc010dnv.2_Silent_p.F451F|ZBTB7C_uc010dnw.2_Silent_p.F429F	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	429	C2H2-type 3.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AGTTGTGCACGAACTTGGCGT	0.592													6	51					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566348	45566348	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:45566348C>T	uc002lda.2	-	1	1147	c.1131G>A	c.(1129-1131)GGG>GGA	p.G377G	ZBTB7C_uc002ldb.2_Silent_p.G377G|ZBTB7C_uc010dnu.2_Silent_p.G386G|ZBTB7C_uc010dnv.2_Silent_p.G399G|ZBTB7C_uc010dnw.2_Silent_p.G377G|ZBTB7C_uc010dnx.1_Silent_p.G377G|ZBTB7C_uc010dny.1_Silent_p.G377G|ZBTB7C_uc010dnz.1_Silent_p.G399G|ZBTB7C_uc010dob.1_Silent_p.G377G|ZBTB7C_uc010doc.1_Silent_p.G386G|ZBTB7C_uc010dod.1_Silent_p.G399G|ZBTB7C_uc010doe.1_Silent_p.G377G|ZBTB7C_uc010dof.1_Silent_p.G377G|ZBTB7C_uc010dog.1_Silent_p.G377G|ZBTB7C_uc010doh.1_Silent_p.G386G|ZBTB7C_uc010doi.1_Silent_p.G377G|ZBTB7C_uc010doj.1_Silent_p.G386G|ZBTB7C_uc010dok.1_Silent_p.G426G|ZBTB7C_uc010dol.1_Silent_p.G386G|ZBTB7C_uc010doa.1_Silent_p.G399G|ZBTB7C_uc010don.1_Silent_p.G385G|ZBTB7C_uc010doo.1_Silent_p.G377G|ZBTB7C_uc010dop.1_Silent_p.G377G|ZBTB7C_uc010doq.1_Silent_p.G386G|ZBTB7C_uc010dor.1_Silent_p.G399G|ZBTB7C_uc010dos.1_Silent_p.G377G|ZBTB7C_uc010dot.1_Silent_p.G377G|ZBTB7C_uc010dou.1_Silent_p.G386G|ZBTB7C_uc010dom.1_Silent_p.G386G	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	377	C2H2-type 1.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GCGGCAGCTTCCCGGCCCCCA	0.642													39	86					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566491	45566491	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:45566491C>T	uc002lda.2	-	1	1004	c.988G>A	c.(988-990)GAC>AAC	p.D330N	ZBTB7C_uc002ldb.2_Missense_Mutation_p.D330N|ZBTB7C_uc010dnu.2_Missense_Mutation_p.D339N|ZBTB7C_uc010dnv.2_Missense_Mutation_p.D352N|ZBTB7C_uc010dnw.2_Missense_Mutation_p.D330N|ZBTB7C_uc010dnx.1_Missense_Mutation_p.D330N|ZBTB7C_uc010dny.1_Missense_Mutation_p.D330N|ZBTB7C_uc010dnz.1_Missense_Mutation_p.D352N|ZBTB7C_uc010dob.1_Missense_Mutation_p.D330N|ZBTB7C_uc010doc.1_Missense_Mutation_p.D339N|ZBTB7C_uc010dod.1_Missense_Mutation_p.D352N|ZBTB7C_uc010doe.1_Missense_Mutation_p.D330N|ZBTB7C_uc010dof.1_Missense_Mutation_p.D330N|ZBTB7C_uc010dog.1_Missense_Mutation_p.D330N|ZBTB7C_uc010doh.1_Missense_Mutation_p.D339N|ZBTB7C_uc010doi.1_Missense_Mutation_p.D330N|ZBTB7C_uc010doj.1_Missense_Mutation_p.D339N|ZBTB7C_uc010dok.1_Missense_Mutation_p.D379N|ZBTB7C_uc010dol.1_Missense_Mutation_p.D339N|ZBTB7C_uc010doa.1_Missense_Mutation_p.D352N|ZBTB7C_uc010don.1_Missense_Mutation_p.D338N|ZBTB7C_uc010doo.1_Missense_Mutation_p.D330N|ZBTB7C_uc010dop.1_Missense_Mutation_p.D330N|ZBTB7C_uc010doq.1_Missense_Mutation_p.D339N|ZBTB7C_uc010dor.1_Missense_Mutation_p.D352N|ZBTB7C_uc010dos.1_Missense_Mutation_p.D330N|ZBTB7C_uc010dot.1_Missense_Mutation_p.D330N|ZBTB7C_uc010dou.1_Missense_Mutation_p.D339N|ZBTB7C_uc010dom.1_Missense_Mutation_p.D339N	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	330						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GCACCGTAGTCGTTCTCCGCC	0.637													33	66					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566511	45566511	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:45566511C>T	uc002lda.2	-	1	984	c.968G>A	c.(967-969)GGA>GAA	p.G323E	ZBTB7C_uc002ldb.2_Missense_Mutation_p.G323E|ZBTB7C_uc010dnu.2_Missense_Mutation_p.G332E|ZBTB7C_uc010dnv.2_Missense_Mutation_p.G345E|ZBTB7C_uc010dnw.2_Missense_Mutation_p.G323E|ZBTB7C_uc010dnx.1_Missense_Mutation_p.G323E|ZBTB7C_uc010dny.1_Missense_Mutation_p.G323E|ZBTB7C_uc010dnz.1_Missense_Mutation_p.G345E|ZBTB7C_uc010dob.1_Missense_Mutation_p.G323E|ZBTB7C_uc010doc.1_Missense_Mutation_p.G332E|ZBTB7C_uc010dod.1_Missense_Mutation_p.G345E|ZBTB7C_uc010doe.1_Missense_Mutation_p.G323E|ZBTB7C_uc010dof.1_Missense_Mutation_p.G323E|ZBTB7C_uc010dog.1_Missense_Mutation_p.G323E|ZBTB7C_uc010doh.1_Missense_Mutation_p.G332E|ZBTB7C_uc010doi.1_Missense_Mutation_p.G323E|ZBTB7C_uc010doj.1_Missense_Mutation_p.G332E|ZBTB7C_uc010dok.1_Missense_Mutation_p.G372E|ZBTB7C_uc010dol.1_Missense_Mutation_p.G332E|ZBTB7C_uc010doa.1_Missense_Mutation_p.G345E|ZBTB7C_uc010don.1_Missense_Mutation_p.G331E|ZBTB7C_uc010doo.1_Missense_Mutation_p.G323E|ZBTB7C_uc010dop.1_Missense_Mutation_p.G323E|ZBTB7C_uc010doq.1_Missense_Mutation_p.G332E|ZBTB7C_uc010dor.1_Missense_Mutation_p.G345E|ZBTB7C_uc010dos.1_Missense_Mutation_p.G323E|ZBTB7C_uc010dot.1_Missense_Mutation_p.G323E|ZBTB7C_uc010dou.1_Missense_Mutation_p.G332E|ZBTB7C_uc010dom.1_Missense_Mutation_p.G332E	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	323	Pro-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						CTTGATGGGTCCCAGAGGCCC	0.632													29	71					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45567106	45567106	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:45567106C>T	uc002lda.2	-	1	389	c.373G>A	c.(373-375)GAG>AAG	p.E125K	ZBTB7C_uc002ldb.2_Missense_Mutation_p.E125K|ZBTB7C_uc010dnu.2_Missense_Mutation_p.E134K|ZBTB7C_uc010dnv.2_Missense_Mutation_p.E147K|ZBTB7C_uc010dnw.2_Missense_Mutation_p.E125K|ZBTB7C_uc010dnx.1_Missense_Mutation_p.E125K|ZBTB7C_uc010dny.1_Missense_Mutation_p.E125K|ZBTB7C_uc010dnz.1_Missense_Mutation_p.E147K|ZBTB7C_uc010dob.1_Missense_Mutation_p.E125K|ZBTB7C_uc010doc.1_Missense_Mutation_p.E134K|ZBTB7C_uc010dod.1_Missense_Mutation_p.E147K|ZBTB7C_uc010doe.1_Missense_Mutation_p.E125K|ZBTB7C_uc010dof.1_Missense_Mutation_p.E125K|ZBTB7C_uc010dog.1_Missense_Mutation_p.E125K|ZBTB7C_uc010doh.1_Missense_Mutation_p.E134K|ZBTB7C_uc010doi.1_Missense_Mutation_p.E125K|ZBTB7C_uc010doj.1_Missense_Mutation_p.E134K|ZBTB7C_uc010dok.1_Missense_Mutation_p.E174K|ZBTB7C_uc010dol.1_Missense_Mutation_p.E134K|ZBTB7C_uc010doa.1_Missense_Mutation_p.E147K|ZBTB7C_uc010don.1_Missense_Mutation_p.E133K|ZBTB7C_uc010doo.1_Missense_Mutation_p.E125K|ZBTB7C_uc010dop.1_Missense_Mutation_p.E125K|ZBTB7C_uc010doq.1_Missense_Mutation_p.E134K|ZBTB7C_uc010dor.1_Missense_Mutation_p.E147K|ZBTB7C_uc010dos.1_Missense_Mutation_p.E125K|ZBTB7C_uc010dot.1_Missense_Mutation_p.E125K|ZBTB7C_uc010dou.1_Missense_Mutation_p.E134K|ZBTB7C_uc010dom.1_Missense_Mutation_p.E134K	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	125	Glu-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCCATGATCTCCAGGCACACG	0.343													4	33					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45567206	45567206	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:45567206G>A	uc002lda.2	-	1	289	c.273C>T	c.(271-273)TTC>TTT	p.F91F	ZBTB7C_uc002ldb.2_Silent_p.F91F|ZBTB7C_uc010dnu.2_Silent_p.F100F|ZBTB7C_uc010dnv.2_Silent_p.F113F|ZBTB7C_uc010dnw.2_Silent_p.F91F|ZBTB7C_uc010dnx.1_Silent_p.F91F|ZBTB7C_uc010dny.1_Silent_p.F91F|ZBTB7C_uc010dnz.1_Silent_p.F113F|ZBTB7C_uc010dob.1_Silent_p.F91F|ZBTB7C_uc010doc.1_Silent_p.F100F|ZBTB7C_uc010dod.1_Silent_p.F113F|ZBTB7C_uc010doe.1_Silent_p.F91F|ZBTB7C_uc010dof.1_Silent_p.F91F|ZBTB7C_uc010dog.1_Silent_p.F91F|ZBTB7C_uc010doh.1_Silent_p.F100F|ZBTB7C_uc010doi.1_Silent_p.F91F|ZBTB7C_uc010doj.1_Silent_p.F100F|ZBTB7C_uc010dok.1_Silent_p.F140F|ZBTB7C_uc010dol.1_Silent_p.F100F|ZBTB7C_uc010doa.1_Silent_p.F113F|ZBTB7C_uc010don.1_Silent_p.F99F|ZBTB7C_uc010doo.1_Silent_p.F91F|ZBTB7C_uc010dop.1_Silent_p.F91F|ZBTB7C_uc010doq.1_Silent_p.F100F|ZBTB7C_uc010dor.1_Silent_p.F113F|ZBTB7C_uc010dos.1_Silent_p.F91F|ZBTB7C_uc010dot.1_Silent_p.F91F|ZBTB7C_uc010dou.1_Silent_p.F100F|ZBTB7C_uc010dom.1_Silent_p.F100F	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	91	BTB.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AGGTGTAGGCGAACTCCAGGA	0.572													22	49					0	0	1	0	0
KIAA0427	9811	broad.mit.edu	37	18	46145989	46145989	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:46145989C>T	uc002ldc.2	+	2	338	c.53C>T	c.(52-54)TCC>TTC	p.S18F	KIAA0427_uc002ldd.2_Missense_Mutation_p.S18F	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	18	Interaction with NCBP1/CBP80.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						AGCAGCCGCTCCCAGGAGATC	0.642													4	6					0	0	1	0	0
KIAA0427	9811	broad.mit.edu	37	18	46343634	46343634	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:46343634G>A	uc002ldc.2	+	10	1699	c.1414G>A	c.(1414-1416)GAG>AAG	p.E472K	KIAA0427_uc002ldd.2_Missense_Mutation_p.E474K|KIAA0427_uc002lde.3_Missense_Mutation_p.E101K	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	472	MIF4G.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						GCAGGACGTGGAGCGCTGGCT	0.672													19	87					0	0	1	0	0
SMAD7	4092	broad.mit.edu	37	18	46447850	46447850	+	Silent	SNP	C	T	T	rs34151545	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:46447850C>T	uc002ldg.2	-	4	1460	c.1173G>A	c.(1171-1173)ACG>ACA	p.T391T	SMAD7_uc002ldf.2_Silent_p.T203T|SMAD7_uc010xde.1_Silent_p.T176T	NM_005904	NP_005895	O15105	SMAD7_HUMAN	SMAD family member 7	391	MH2.				adherens junction assembly|artery morphogenesis|BMP signaling pathway|cellular protein complex localization|negative regulation of BMP signaling pathway|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of peptidyl-serine phosphorylation|negative regulation of peptidyl-threonine phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of ubiquitin-protein ligase activity|pathway-restricted SMAD protein phosphorylation|positive regulation of anti-apoptosis|positive regulation of cell-cell adhesion|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein stabilization|regulation of activin receptor signaling pathway|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	centrosome|cytosol|nucleolus|plasma membrane|transcription factor complex	activin binding|beta-catenin binding|I-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding				0	Colorectal(1;0.0518)					CGGTAAAGCCCGTCCACGGCT	0.577													13	30					0	0	1	0	0
SMAD7	4092	broad.mit.edu	37	18	46447991	46447991	+	Silent	SNP	G	A	A	rs143946125	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:46447991G>A	uc002ldg.2	-	4	1319	c.1032C>T	c.(1030-1032)TCC>TCT	p.S344S	SMAD7_uc002ldf.2_Silent_p.S156S|SMAD7_uc010xde.1_Silent_p.S129S	NM_005904	NP_005895	O15105	SMAD7_HUMAN	SMAD family member 7	344	MH2.				adherens junction assembly|artery morphogenesis|BMP signaling pathway|cellular protein complex localization|negative regulation of BMP signaling pathway|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of peptidyl-serine phosphorylation|negative regulation of peptidyl-threonine phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of ubiquitin-protein ligase activity|pathway-restricted SMAD protein phosphorylation|positive regulation of anti-apoptosis|positive regulation of cell-cell adhesion|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein stabilization|regulation of activin receptor signaling pathway|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	centrosome|cytosol|nucleolus|plasma membrane|transcription factor complex	activin binding|beta-catenin binding|I-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding				0	Colorectal(1;0.0518)					CCAGTGTGGCGGACTTGATGA	0.582													13	29					0	0	1	0	0
LIPG	9388	broad.mit.edu	37	18	47091816	47091816	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47091816A>T	uc002ldv.2	+	2	479	c.227A>T	c.(226-228)GAC>GTC	p.D76V	LIPG_uc002ldu.1_Missense_Mutation_p.D76V|LIPG_uc010xdh.1_Missense_Mutation_p.D76V	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	endothelial lipase precursor	76					cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			ovary(1)|skin(1)	2						CCCTTAGAAGACTGCAGTTTC	0.517													18	60					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47379846	47379846	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47379846T>A	uc002leb.2	-	31	4482	c.4194A>T	c.(4192-4194)GAA>GAT	p.E1398D	MYO5B_uc002lea.2_Missense_Mutation_p.E513D	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1398	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GCCGGGATATTTCCTGCTGAA	0.567													20	67					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47379867	47379867	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47379867C>T	uc002leb.2	-	31	4461	c.4173G>A	c.(4171-4173)GTG>GTA	p.V1391V	MYO5B_uc002lea.2_Silent_p.V506V	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1391	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CGCCGAATTCCACCTGGGCCT	0.567													35	70					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47390600	47390600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47390600C>T	uc002leb.2	-	28	4042	c.3754G>A	c.(3754-3756)GAG>AAG	p.E1252K	MYO5B_uc002lea.2_Missense_Mutation_p.E393K	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1252	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCGAGCTCCTCGTGGGCCAGC	0.637													21	81					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47398567	47398567	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47398567C>T	uc002leb.2	-	27	3861	c.3573G>A	c.(3571-3573)CCG>CCA	p.P1191P	MYO5B_uc002lea.2_Silent_p.P332P	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1191	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GATCTGCATTCGGGTCCAAAT	0.428													27	468					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47405400	47405400	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47405400C>T	uc002leb.2	-	24	3479	c.3191G>A	c.(3190-3192)CGA>CAA	p.R1064Q	MYO5B_uc002lea.2_Missense_Mutation_p.R205Q	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1064	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GTACCGGGATCGCTCCTCCTC	0.468													23	60					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47432804	47432804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47432804C>T	uc002leb.2	-	19	2687	c.2399G>A	c.(2398-2400)GGA>GAA	p.G800E		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	800	IQ 2.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GGCCAGGTGTCCCCGGCAGTA	0.582													8	48					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47432807	47432807	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47432807C>T	uc002leb.2	-	19	2684	c.2396G>A	c.(2395-2397)CGG>CAG	p.R799Q		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	799	IQ 2.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CAGGTGTCCCCGGCAGTACCT	0.582													7	51					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47463690	47463690	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47463690C>T	uc002leb.2	-	15	2118	c.1830G>A	c.(1828-1830)TCG>TCA	p.S610S	MYO5B_uc002lec.1_Silent_p.S609S	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	610	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CGCTGATCTTCGAAGATGACC	0.532													25	72					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47500803	47500803	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47500803G>A	uc002leb.2	-	10	1527	c.1239C>T	c.(1237-1239)TTC>TTT	p.F413F	MYO5B_uc002lec.1_Silent_p.F412F	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	413	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CAATCCAGCCGAACAACTGGG	0.592													39	66					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47500966	47500966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47500966C>T	uc002leb.2	-	10	1364	c.1076G>A	c.(1075-1077)AGC>AAC	p.S359N	MYO5B_uc002lec.1_Missense_Mutation_p.S358N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	359	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GCAGAAGTTGCTTAGGTATAC	0.592													41	95					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47506910	47506911	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47506910_47506911GG>AA	uc002leb.2	-	9	1247_1248	c.959_960CC>TT	c.(958-960)TCC>TTT	p.S320F	MYO5B_uc002lec.1_Missense_Mutation_p.S319F	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	320	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCATCTGATGGGACTCTTTCAC	0.391													9	52					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47511092	47511092	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47511092G>A	uc002leb.2	-	8	1230	c.942C>T	c.(940-942)CTC>CTT	p.L314L	MYO5B_uc002lec.1_Silent_p.L313L	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	314	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CCTTACCGAGGAGTGTGAAGG	0.552													23	62					0	0	1	0	0
CCDC11	220136	broad.mit.edu	37	18	47777887	47777887	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47777887C>T	uc002lee.2	-	4	832	c.741G>A	c.(739-741)GCG>GCA	p.A247A		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	247	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		GCAGCTGTGTCGCCTGCCTTT	0.557													28	66					0	0	1	0	0
CXXC1	30827	broad.mit.edu	37	18	47812438	47812438	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:47812438G>A	uc002leq.3	-	4	1146	c.413C>T	c.(412-414)TCG>TTG	p.S138L	CXXC1_uc002lep.3_5'UTR|CXXC1_uc002ler.3_Missense_Mutation_p.S138L|CXXC1_uc010doy.2_Missense_Mutation_p.S138L|CXXC1_uc002les.2_Missense_Mutation_p.S138L	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	138					histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TTTGTGGGGCGAAGCAGAGCC	0.632													27	71					0	0	1	0	0
MAPK4	5596	broad.mit.edu	37	18	48255634	48255634	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:48255634G>A	uc002lev.2	+	6	2174	c.1174G>A	c.(1174-1176)GAC>AAC	p.D392N	MAPK4_uc010xdm.1_Missense_Mutation_p.D181N|MAPK4_uc010doz.2_3'UTR	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	392					cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		ACTGGCTGAGGACGTGCAGGT	0.701													8	26					0	0	1	0	0
MRO	83876	broad.mit.edu	37	18	48327813	48327813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:48327813C>T	uc002lew.3	-	6	785	c.491G>A	c.(490-492)GGG>GAG	p.G164E	MRO_uc010xdn.1_Intron|MRO_uc010dpa.2_Missense_Mutation_p.G178E|MRO_uc010dpb.2_Intron|MRO_uc010dpc.2_Intron|MRO_uc002lex.3_Missense_Mutation_p.G164E	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	164						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		CCATTTCCTCCCGGCAAAGGC	0.468													69	134					0	0	1	0	0
MRO	83876	broad.mit.edu	37	18	48331680	48331680	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:48331680G>A	uc002lew.3	-	5	567	c.273C>T	c.(271-273)CTC>CTT	p.L91L	MRO_uc010xdn.1_Silent_p.L91L|MRO_uc010dpa.2_Silent_p.L105L|MRO_uc010dpb.2_Silent_p.L105L|MRO_uc010dpc.2_Silent_p.L91L|MRO_uc002lex.3_Silent_p.L91L	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	91						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		CCAGCAGGTCGAGGACAATTT	0.463													15	91					0	0	1	0	0
MRO	83876	broad.mit.edu	37	18	48335705	48335705	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:48335705C>T	uc002lew.3	-	3	360	c.66G>A	c.(64-66)CAG>CAA	p.Q22Q	MRO_uc010xdn.1_Silent_p.Q22Q|MRO_uc010dpa.2_Intron|MRO_uc010dpb.2_Intron|MRO_uc010dpc.2_Silent_p.Q22Q|MRO_uc002lex.3_Silent_p.Q22Q	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	22						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		ATGTCCTTTTCTGCTTGGGCT	0.413													33	77					0	0	1	0	0
MEX3C	51320	broad.mit.edu	37	18	48703761	48703761	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:48703761G>A	uc002lfc.3	-	2	940	c.940C>T	c.(940-942)CTG>TTG	p.L314L		NM_016626	NP_057710	Q5U5Q3	MEX3C_HUMAN	ring finger and KH domain containing 2	314						cytoplasm|nucleus	RNA binding|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		Colorectal(6;0.003)|all_epithelial(6;0.0473)		Colorectal(16;0.0175)|READ - Rectum adenocarcinoma(32;0.15)		AATCCTCCCAGGGCAGGCCCA	0.507													4	34					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50278458	50278458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:50278458C>T	uc002lfe.1	+	2	713	c.126C>T	c.(124-126)TTC>TTT	p.F42F	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	42	Extracellular (Potential).|Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CACTGCGCTTCCTCTCAGAAC	0.483													15	44					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50278595	50278595	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:50278595G>A	uc002lfe.1	+	2	850	c.263G>A	c.(262-264)AGG>AAG	p.R88K	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	88	Extracellular (Potential).|Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		ATGGATGAAAGGAAGCAGCAA	0.483													20	99					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50592458	50592458	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:50592458G>A	uc002lfe.1	+	7	1770	c.1183G>A	c.(1183-1185)GAA>AAA	p.E395K	DCC_uc010xdr.1_Missense_Mutation_p.E243K|DCC_uc010dpf.1_Missense_Mutation_p.E50K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	395	Extracellular (Potential).|Ig-like C2-type 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GAAGTCAGATGAAGGCTTTTA	0.443													12	190					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50683749	50683749	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:50683749C>T	uc002lfe.1	+	8	1872	c.1285C>T	c.(1285-1287)CCT>TCT	p.P429S	DCC_uc010xdr.1_Missense_Mutation_p.P277S|DCC_uc010dpf.1_Missense_Mutation_p.P84S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	429	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CAGTGTCCTCCCTTCGGCTCC	0.537													82	180					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50683792	50683792	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:50683792G>A	uc002lfe.1	+	8	1915	c.1328G>A	c.(1327-1329)CGA>CAA	p.R443Q	DCC_uc010xdr.1_Missense_Mutation_p.R291Q|DCC_uc010dpf.1_Missense_Mutation_p.R98Q	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	443	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GTTTCCAGCCGATTTGTCCGT	0.527													44	170					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50683829	50683829	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:50683829G>A	uc002lfe.1	+	8	1952	c.1365G>A	c.(1363-1365)GCG>GCA	p.A455A	DCC_uc010xdr.1_Silent_p.A303A|DCC_uc010dpf.1_Silent_p.A110A	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	455	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTGCAGAAGCGAAAGGGAACA	0.502													36	97					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50731719	50731719	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:50731719C>T	uc002lfe.1	+	10	2294	c.1707C>T	c.(1705-1707)TCC>TCT	p.S569S	DCC_uc010xdr.1_Silent_p.S417S|DCC_uc010dpf.1_Silent_p.S224S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	569	Extracellular (Potential).|Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTGAGGTGTCCACAGGAAAAG	0.473													44	144					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50976922	50976922	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:50976922G>A	uc002lfe.1	+	23	3869	c.3282G>A	c.(3280-3282)AAG>AAA	p.K1094K	DCC_uc010dpf.1_Silent_p.K729K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1094	Extracellular (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTCCTCAGAAGAACAGCAACC	0.532													28	56					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	51025755	51025755	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:51025755G>A	uc002lfe.1	+	27	4573	c.3986G>A	c.(3985-3987)AGA>AAA	p.R1329K	DCC_uc010dpf.1_Missense_Mutation_p.R962K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1329	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GCACCAAGCAGAACCATCCCC	0.542													46	101					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	51053096	51053097	+	Missense_Mutation	DNP	GG	AA	AA	rs78088324		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:51053096_51053097GG>AA	uc002lfe.1	+	28	4808_4809	c.4221_4222GG>AA	c.(4219-4224)GAGGAG>GAAAAG	p.E1408K	DCC_uc010dpf.1_Missense_Mutation_p.E1041K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1408	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AAGTGTCTGAGGAGAGCCACAA	0.48													8	89					0	0	1	0	0
POLI	11201	broad.mit.edu	37	18	51818291	51818291	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:51818291C>T	uc002lfj.3	+	9	1355	c.1287C>T	c.(1285-1287)ACC>ACT	p.T429T	POLI_uc010xds.1_Silent_p.T350T|POLI_uc002lfk.3_Silent_p.T326T|POLI_uc010dpg.2_Silent_p.T25T	NM_007195	NP_009126	Q9UNA4	POLI_HUMAN	DNA polymerase iota	429					DNA repair|DNA replication	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding|protein binding			ovary(2)|kidney(1)	3				Colorectal(16;0.0234)|READ - Rectum adenocarcinoma(59;0.197)		TTCACCTTACCCTTCTAAGTG	0.338								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					17	70					0	0	1	0	0
STARD6	147323	broad.mit.edu	37	18	51863599	51863599	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:51863599G>A	uc010xdt.1	-	3	163	c.163C>T	c.(163-165)CCA>TCA	p.P55S		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	55	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		GGTGATTCTGGAATTATCCCT	0.313													21	64					0	0	1	0	0
C18orf26	284254	broad.mit.edu	37	18	52262188	52262188	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52262188G>A	uc002lfq.1	+	2	200	c.154G>A	c.(154-156)GAC>AAC	p.D52N	C18orf26_uc002lfp.1_Intron	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	52						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		ACATCCAAATGACCAAGAGGC	0.433													37	71					0	0	1	0	0
C18orf26	284254	broad.mit.edu	37	18	52262300	52262300	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52262300C>T	uc002lfq.1	+	2	312	c.266C>T	c.(265-267)TCA>TTA	p.S89L	C18orf26_uc002lfp.1_Intron	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	89						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		CTTGCACATTCAAGATGTCTA	0.448													55	69					0	0	1	0	0
RAB27B	5874	broad.mit.edu	37	18	52556597	52556597	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52556597G>A	uc002lfr.2	+	6	721	c.610G>A	c.(610-612)GGA>AGA	p.G204R		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	204					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		TGGAAATTCTGGAAACTTGGA	0.398													25	62					0	0	1	0	0
CCDC68	80323	broad.mit.edu	37	18	52571623	52571623	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52571623G>T	uc002lfs.2	-	12	1146	c.974C>A	c.(973-975)TCC>TAC	p.S325Y	CCDC68_uc002lft.2_Missense_Mutation_p.S325Y	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	325										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		TAAATAAGGGGAAACACCTTC	0.378													15	58					1.02788e-11	1.03169e-11	1	1	0
CCDC68	80323	broad.mit.edu	37	18	52575039	52575039	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52575039C>T	uc002lfs.2	-	11	1100	c.928G>A	c.(928-930)GTA>ATA	p.V310I	CCDC68_uc002lft.2_Missense_Mutation_p.V310I	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	310										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		GCCTTAGATACCTTTGTCCTA	0.378													10	107					0	0	1	0	0
CCDC68	80323	broad.mit.edu	37	18	52585170	52585170	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52585170C>T	uc002lfs.2	-	10	1019	c.847G>A	c.(847-849)GAA>AAA	p.E283K	CCDC68_uc002lft.2_Missense_Mutation_p.E283K	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	283	Potential.									skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		TTAACCTTTTCTCTGAGATTT	0.254													9	25					0	0	1	0	0
CCDC68	80323	broad.mit.edu	37	18	52586576	52586576	+	Missense_Mutation	SNP	G	A	A	rs144206846	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52586576G>A	uc002lfs.2	-	9	887	c.715C>T	c.(715-717)CTC>TTC	p.L239F	CCDC68_uc002lft.2_Missense_Mutation_p.L239F	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	239	Potential.									skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		TGCTCCTGGAGAATGGAAATC	0.453													26	73					0	0	1	0	0
CCDC68	80323	broad.mit.edu	37	18	52602104	52602104	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52602104C>T	uc002lfs.2	-	7	719	c.547G>A	c.(547-549)GAA>AAA	p.E183K	CCDC68_uc002lft.2_Missense_Mutation_p.E183K	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	183	Potential.									skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		CTGTGTTTTTCTTCAAGTTTT	0.358													25	46					0	0	1	0	0
CCDC68	80323	broad.mit.edu	37	18	52604151	52604151	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52604151T>A	uc002lfs.2	-	6	556	c.384A>T	c.(382-384)AGA>AGT	p.R128S	CCDC68_uc002lft.2_Missense_Mutation_p.R128S	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	128	Potential.									skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		GGGCCACGTTTCTCAGAGCTG	0.428													9	82					0	0	1	0	0
CCDC68	80323	broad.mit.edu	37	18	52605227	52605227	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52605227G>A	uc002lfs.2	-	5	478	c.306C>T	c.(304-306)CTC>CTT	p.L102L	CCDC68_uc002lft.2_Silent_p.L102L	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	102	Potential.									skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		TCATTTCTAAGAGCTGTAGGT	0.353													5	47					0	0	1	0	0
TCF4	6925	broad.mit.edu	37	18	52901800	52901800	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52901800G>A	uc002lfz.2	-	16	2077	c.1465C>T	c.(1465-1467)CCA>TCA	p.P489S	TCF4_uc002lfw.3_Missense_Mutation_p.P329S|TCF4_uc010xdu.1_Missense_Mutation_p.P359S|TCF4_uc010xdv.1_Missense_Mutation_p.P359S|TCF4_uc002lfx.2_Missense_Mutation_p.P418S|TCF4_uc010xdw.1_Missense_Mutation_p.P359S|TCF4_uc002lfy.2_Missense_Mutation_p.P447S|TCF4_uc010xdx.1_Missense_Mutation_p.P465S|TCF4_uc010dph.1_Missense_Mutation_p.P489S|TCF4_uc010xdy.1_Missense_Mutation_p.P465S|TCF4_uc002lga.2_Missense_Mutation_p.P591S|TCF4_uc002lgb.1_Missense_Mutation_p.P329S|TCF4_uc010dpi.2_Missense_Mutation_p.P495S|TCF4_uc002lfv.2_Missense_Mutation_p.P272S	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	489					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		TCCTGGGGTGGGTTCAGGTCA	0.562											OREG0024990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	81					0	0	1	0	0
TCF4	6925	broad.mit.edu	37	18	52942981	52942981	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:52942981C>T	uc002lfz.2	-	10	1270	c.658G>A	c.(658-660)GGC>AGC	p.G220S	TCF4_uc002lfw.3_Missense_Mutation_p.G60S|TCF4_uc010xdu.1_Missense_Mutation_p.G90S|TCF4_uc010xdv.1_Missense_Mutation_p.G90S|TCF4_uc002lfx.2_Missense_Mutation_p.G149S|TCF4_uc010xdw.1_Missense_Mutation_p.G90S|TCF4_uc002lfy.2_Missense_Mutation_p.G178S|TCF4_uc010xdx.1_Missense_Mutation_p.G196S|TCF4_uc010dph.1_Missense_Mutation_p.G220S|TCF4_uc010xdy.1_Missense_Mutation_p.G196S|TCF4_uc002lga.2_Missense_Mutation_p.G322S|TCF4_uc002lgb.1_Missense_Mutation_p.G60S|TCF4_uc010dpi.2_Missense_Mutation_p.G226S|TCF4_uc002lgc.3_Missense_Mutation_p.G141S|TCF4_uc002lfv.2_Missense_Mutation_p.G4S	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	220					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		CTGTGATGGCCATCTGTAAAG	0.463													24	157					0	0	1	0	0
TCF4	6925	broad.mit.edu	37	18	53017610	53017610	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:53017610G>A	uc002lfz.2	-	8	1141	c.529C>T	c.(529-531)CCT>TCT	p.P177S	TCF4_uc010xdu.1_Missense_Mutation_p.P47S|TCF4_uc010xdv.1_Missense_Mutation_p.P47S|TCF4_uc002lfx.2_Missense_Mutation_p.P106S|TCF4_uc010xdw.1_Missense_Mutation_p.P47S|TCF4_uc002lfy.2_Missense_Mutation_p.P135S|TCF4_uc010xdx.1_Missense_Mutation_p.P153S|TCF4_uc010dph.1_Missense_Mutation_p.P177S|TCF4_uc010xdy.1_Missense_Mutation_p.P153S|TCF4_uc002lga.2_Missense_Mutation_p.P279S|TCF4_uc010dpi.2_Missense_Mutation_p.P177S|TCF4_uc002lgc.3_Missense_Mutation_p.P98S	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	177					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		AAACCTGGAGGAACTTTTCGA	0.363													23	69					0	0	1	0	0
WDR7	23335	broad.mit.edu	37	18	54363639	54363639	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:54363639C>T	uc002lgk.1	+	12	1735	c.1524C>T	c.(1522-1524)TTC>TTT	p.F508F	WDR7_uc010dpk.1_Intron|WDR7_uc002lgl.1_Silent_p.F508F	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	508										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		AACATATCTTCTGTGTTCATG	0.363													33	103					0	0	1	0	0
Unknown	0	broad.mit.edu	37	18	54814920	54814920	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:54814920C>T	uc002lgm.2	+	1	585	c.377C>T	c.(376-378)CCA>CTA	p.P126L						RecName: Full=Protein FAM44C;																		GTGGTGGATCCAAAACTAAAC	0.502													20	50					0	0	1	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55021669	55021669	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:55021669C>T	uc002lgn.2	+	2	573	c.216C>T	c.(214-216)TTC>TTT	p.F72F		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	72	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		ACCCGTCATTCGTGCCCATTA	0.498													29	164					0	0	1	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55024477	55024477	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:55024477C>T	uc002lgn.2	+	3	993	c.636C>T	c.(634-636)CCC>CCT	p.P212P		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	212	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		CCTTCAACCCCAGCATCCTGG	0.398													31	103					0	0	1	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55027323	55027323	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:55027323G>A	uc002lgn.2	+	4	1315	c.958G>A	c.(958-960)GGA>AGA	p.G320R		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	320	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		CCACTTGTATGGATTTTGGCC	0.423													16	51					0	0	1	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55027359	55027359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:55027359G>A	uc002lgn.2	+	4	1351	c.994G>A	c.(994-996)GAA>AAA	p.E332K		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	332	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		CAACACAAGGGAAGATCTTCC	0.463													19	57					0	0	1	0	0
ONECUT2	9480	broad.mit.edu	37	18	55143862	55143862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:55143862C>T	uc002lgo.2	+	2	1454	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F		NM_004852	NP_004843	O95948	ONEC2_HUMAN	one cut domain, family member 2	474	Homeobox.				organ morphogenesis	nucleus	sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3		Colorectal(73;0.234)		READ - Rectum adenocarcinoma(59;0.227)|Colorectal(16;0.245)		GCAACTTCTTCATGAACGCCC	0.577													13	71					0	0	1	0	0
ATP8B1	5205	broad.mit.edu	37	18	55336670	55336670	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:55336670C>T	uc002lgw.2	-	17	1977	c.1977G>A	c.(1975-1977)AAG>AAA	p.K659K	uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	659	Cytoplasmic (Potential).		Missing (in PFIC1).		ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				CTTCAATTTCCTTGTAGCAAA	0.343									Byler_disease				12	49					0	0	1	0	0
ATP8B1	5205	broad.mit.edu	37	18	55352346	55352346	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:55352346C>T	uc002lgw.2	-	13	1431	c.1431G>A	c.(1429-1431)GGG>GGA	p.G477G	uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	477	Cytoplasmic (Potential).				ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				CCCGATGGTCCCCTGAGAAAC	0.408									Byler_disease				9	123					0	0	1	0	0
ATP8B1	5205	broad.mit.edu	37	18	55362421	55362421	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:55362421C>T	uc002lgw.2	-	9	922	c.922G>A	c.(922-924)GGC>AGC	p.G308S	uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	308	Cytoplasmic (Potential).				ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				ATGACTAAGCCGTGGCAGAAA	0.383									Byler_disease				29	57					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56196429	56196429	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56196429C>T	uc002lhj.3	-	6	5609	c.5395G>A	c.(5395-5397)GAA>AAA	p.E1799K	ALPK2_uc002lhk.1_Missense_Mutation_p.E1130K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1799	Ig-like 2.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CCAGAGTGTTCAGGGAACATC	0.308													16	108					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56202161	56202161	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56202161G>A	uc002lhj.3	-	5	5472	c.5258C>T	c.(5257-5259)GCC>GTC	p.A1753V	ALPK2_uc002lhk.1_Missense_Mutation_p.A1084V	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1753							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TTTAAGAAAGGCTGAGTTCTT	0.408													45	119					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56202291	56202291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56202291C>T	uc002lhj.3	-	5	5342	c.5128G>A	c.(5128-5130)GAG>AAG	p.E1710K	ALPK2_uc002lhk.1_Missense_Mutation_p.E1041K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1710							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CTCTTGACCTCCTCTGACCCC	0.567													38	117					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56202404	56202404	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56202404G>A	uc002lhj.3	-	5	5229	c.5015C>T	c.(5014-5016)CCA>CTA	p.P1672L	ALPK2_uc002lhk.1_Missense_Mutation_p.P1003L	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1672							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CTTTTGACATGGATCCTGCAG	0.532													21	111					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56202538	56202538	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56202538C>T	uc002lhj.3	-	5	5095	c.4881G>A	c.(4879-4881)ATG>ATA	p.M1627I	ALPK2_uc002lhk.1_Missense_Mutation_p.M958I	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1627							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TAGGTTCCTCCATTTTGTGGC	0.458													24	86					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56202735	56202735	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56202735C>T	uc002lhj.3	-	5	4898	c.4684G>A	c.(4684-4686)GGC>AGC	p.G1562S	ALPK2_uc002lhk.1_Missense_Mutation_p.G893S	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1562							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGAATTTGGCCTGTGGAGTTG	0.448													27	96					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56203125	56203125	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56203125C>T	uc002lhj.3	-	5	4508	c.4294G>A	c.(4294-4296)GAA>AAA	p.E1432K	ALPK2_uc002lhk.1_Missense_Mutation_p.E763K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1432							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGACCCCCTTCTCTGGCGCCC	0.512													17	91					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56204425	56204425	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56204425G>A	uc002lhj.3	-	5	3208	c.2994C>T	c.(2992-2994)TGC>TGT	p.C998C	ALPK2_uc002lhk.1_Silent_p.C329C	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	998							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TCGCTTGAAAGCACTCATTAT	0.488													46	68					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56204804	56204804	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56204804G>A	uc002lhj.3	-	5	2829	c.2615C>T	c.(2614-2616)TCA>TTA	p.S872L	ALPK2_uc002lhk.1_Missense_Mutation_p.S203L	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	872							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CGTAGACACTGAAGTCTCAGA	0.423													7	50					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56246224	56246224	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56246224G>A	uc002lhj.3	-	4	1998	c.1784C>T	c.(1783-1785)TCC>TTC	p.S595F		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	595							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						ATCAGCATGGGAACTCCGACC	0.488											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	85					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56246777	56246777	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56246777C>T	uc002lhj.3	-	4	1445	c.1231G>A	c.(1231-1233)GGG>AGG	p.G411R		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	411							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CTCCTCACCCCAACTTCTTGG	0.572											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	45					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56247040	56247040	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56247040G>A	uc002lhj.3	-	4	1182	c.968C>T	c.(967-969)TCA>TTA	p.S323L		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	323							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GTCATCATCTGAAAACTCCTC	0.458											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	204					0	0	1	0	0
ZNF532	55205	broad.mit.edu	37	18	56587632	56587632	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56587632C>T	uc002lho.2	+	4	2660	c.2113C>T	c.(2113-2115)CTT>TTT	p.L705F	ZNF532_uc002lhp.2_Missense_Mutation_p.L703F|ZNF532_uc010xeg.1_Missense_Mutation_p.L703F|ZNF532_uc002lhr.2_Missense_Mutation_p.L703F|ZNF532_uc002lhs.2_Missense_Mutation_p.L703F	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	705					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						AACTTCCACTCTTCAGAGCCC	0.483													6	92					0	0	1	0	0
ZNF532	55205	broad.mit.edu	37	18	56606836	56606836	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56606836C>T	uc002lho.2	+	6	3235	c.2688C>T	c.(2686-2688)ATC>ATT	p.I896I	ZNF532_uc002lhp.2_Silent_p.I894I|ZNF532_uc010xeg.1_Silent_p.I894I|ZNF532_uc002lhr.2_Silent_p.I894I|ZNF532_uc002lhs.2_Silent_p.I894I	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	896					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						ATCCTGGCATCAAGATAGGAG	0.423													10	117					0	0	1	0	0
RAX	30062	broad.mit.edu	37	18	56939653	56939653	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56939653C>T	uc002lhx.2	-	2	670	c.483G>A	c.(481-483)CCG>CCA	p.P161P	RAX_uc010dpp.2_Intron	NM_013435	NP_038463	Q9Y2V3	RX_HUMAN	retina and anterior neural fold homeobox	161	Homeobox.				visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1		Lung NSC(161;0.0804)|Colorectal(73;0.0946)		STAD - Stomach adenocarcinoma(84;0.18)		TGTACACGTCCGGGTAGTGGG	0.622													34	51					0	0	1	0	0
RAX	30062	broad.mit.edu	37	18	56939814	56939814	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56939814C>T	uc002lhx.2	-	2	509	c.322G>A	c.(322-324)GAG>AAG	p.E108K	RAX_uc010dpp.2_Intron	NM_013435	NP_038463	Q9Y2V3	RX_HUMAN	retina and anterior neural fold homeobox	108					visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1		Lung NSC(161;0.0804)|Colorectal(73;0.0946)		STAD - Stomach adenocarcinoma(84;0.18)		GGCCGTGCCTCCCCGGGCTCC	0.701													17	57					0	0	1	0	0
RAX	30062	broad.mit.edu	37	18	56939816	56939816	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:56939816C>T	uc002lhx.2	-	2	507	c.320G>A	c.(319-321)GGG>GAG	p.G107E	RAX_uc010dpp.2_Intron	NM_013435	NP_038463	Q9Y2V3	RX_HUMAN	retina and anterior neural fold homeobox	107				G -> W (in Ref. 1; AAD23438).	visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1		Lung NSC(161;0.0804)|Colorectal(73;0.0946)		STAD - Stomach adenocarcinoma(84;0.18)		CCGTGCCTCCCCGGGCTCCTT	0.701													16	56					0	0	1	0	0
LMAN1	3998	broad.mit.edu	37	18	57013217	57013217	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:57013217G>A	uc002lhz.2	-	8	921	c.889C>T	c.(889-891)CAA>TAA	p.Q297*		NM_005570	NP_005561	P49257	LMAN1_HUMAN	lectin, mannose-binding, 1 precursor	297	Lumenal (Potential).				blood coagulation|ER to Golgi vesicle-mediated transport|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			skin(1)	1		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	AATTCTTGTTGAAAGTGCTCA	0.418													18	131					0	0	1	0	0
CCBE1	147372	broad.mit.edu	37	18	57103257	57103257	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:57103257G>A	uc002lib.2	-	11	1174	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	CCBE1_uc010dpq.2_Silent_p.F97F|CCBE1_uc002lia.2_Silent_p.F221F	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	368					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				GAGGTAAAGGGAACTCCTCTG	0.532													55	163					0	0	1	0	0
CCBE1	147372	broad.mit.edu	37	18	57107002	57107002	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:57107002G>A	uc002lib.2	-	8	892	c.822C>T	c.(820-822)GGC>GGT	p.G274G	CCBE1_uc010dpq.2_Intron|CCBE1_uc002lia.2_Silent_p.G127G	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	274	Collagen-like 1.				lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				GCCCAGGAGGGCCTGGCATAC	0.602													16	54					0	0	1	0	0
CCBE1	147372	broad.mit.edu	37	18	57115230	57115230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:57115230C>T	uc002lib.2	-	7	830	c.760G>A	c.(760-762)GGC>AGC	p.G254S	CCBE1_uc010dpq.2_Silent_p.G29G|CCBE1_uc002lia.2_Missense_Mutation_p.G107S	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	254	Collagen-like 1.				lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				GGGCCCTGGCCCCCAGGCAGG	0.582													39	90					0	0	1	0	0
CCBE1	147372	broad.mit.edu	37	18	57136731	57136731	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:57136731C>T	uc002lib.2	-	4	444	c.374G>A	c.(373-375)CGG>CAG	p.R125Q		NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	125					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				CTCCCGCTTCCGGTGTCTCTC	0.537													26	136					0	0	1	0	0
CCBE1	147372	broad.mit.edu	37	18	57136782	57136782	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:57136782C>T	uc002lib.2	-	4	393	c.323G>A	c.(322-324)CGA>CAA	p.R108Q		NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	108					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				ACACAGCACTCGGCCAAAGTT	0.522													52	111					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59166535	59166535	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:59166535G>A	uc010dps.1	+	2	375	c.363G>A	c.(361-363)AGG>AGA	p.R121R	CDH20_uc002lif.2_Silent_p.R115R	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	121	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CCATTCAGAGGCTCGACCGAG	0.552													13	20					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59166625	59166625	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:59166625C>T	uc010dps.1	+	2	465	c.453C>T	c.(451-453)TTC>TTT	p.F151F	CDH20_uc002lif.2_Silent_p.F145F	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	151	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				AGTCAGAGTTCATCATCAAAA	0.537													9	33					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59170239	59170239	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:59170239G>A	uc010dps.1	+	4	727	c.715G>A	c.(715-717)GAA>AAA	p.E239K	CDH20_uc002lif.2_Missense_Mutation_p.E233K	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	239	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				AGAATACTACGAAGTGATTAT	0.448											OREG0025026	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	56	103					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59203811	59203811	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:59203811G>A	uc010dps.1	+	7	1369	c.1357G>A	c.(1357-1359)GAC>AAC	p.D453N	CDH20_uc002lif.2_Missense_Mutation_p.D447N	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	453	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				AAGACCCCTAGACCGGGAAGA	0.418													56	135					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59221482	59221482	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:59221482G>A	uc010dps.1	+	11	1972	c.1960G>A	c.(1960-1962)GAC>AAC	p.D654N	CDH20_uc002lif.2_Missense_Mutation_p.D648N	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	654	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CATCATCGACGACGAGGAAAA	0.577													47	147					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59221500	59221500	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:59221500G>A	uc010dps.1	+	11	1990	c.1978G>A	c.(1978-1980)GAG>AAG	p.E660K	CDH20_uc002lif.2_Missense_Mutation_p.E654K	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	660	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				AAACATCCACGAGAACATCGT	0.612													51	162					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59221646	59221646	+	Silent	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:59221646C>G	uc010dps.1	+	11	2136	c.2124C>G	c.(2122-2124)CTC>CTG	p.L708L	CDH20_uc002lif.2_Silent_p.L702L	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	708	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				TCGAGAGCCTCTCCCGCTACG	0.687													14	51					0	0	1	0	0
KIAA1468	57614	broad.mit.edu	37	18	59947646	59947646	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:59947646C>T	uc002lil.2	+	23	3236	c.3021C>T	c.(3019-3021)GCC>GCT	p.A1007A	KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	1007	HEAT 3.						binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				TTGCTCCGGCCCTTGTTACCT	0.438													27	133					0	0	1	0	0
TNFRSF11A	8792	broad.mit.edu	37	18	60027228	60027228	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:60027228G>A	uc002lin.2	+	6	600	c.562G>A	c.(562-564)GAG>AAG	p.E188K	TNFRSF11A_uc010dpv.2_Missense_Mutation_p.E188K	NM_003839	NP_003830	Q9Y6Q6	TNR11_HUMAN	tumor necrosis factor receptor superfamily,	188	TNFR-Cys 4.|Extracellular (Potential).				adaptive immune response|cell-cell signaling|circadian temperature homeostasis|monocyte chemotaxis|osteoclast differentiation|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|response to interleukin-1|response to lipopolysaccharide	external side of plasma membrane|integral to membrane	metal ion binding|tumor necrosis factor receptor activity			breast(2)|lung(1)	3		Colorectal(73;0.188)				TCATGGGACAGAGAAATCCGA	0.433									Paget_Disease_of_Bone				27	70					0	0	1	0	0
TNFRSF11A	8792	broad.mit.edu	37	18	60028961	60028961	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:60028961C>T	uc002lin.2	+	7	703	c.665C>T	c.(664-666)TCT>TTT	p.S222F	TNFRSF11A_uc010dpv.2_Intron	NM_003839	NP_003830	Q9Y6Q6	TNR11_HUMAN	tumor necrosis factor receptor superfamily,	222	Helical; (Potential).				adaptive immune response|cell-cell signaling|circadian temperature homeostasis|monocyte chemotaxis|osteoclast differentiation|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|response to interleukin-1|response to lipopolysaccharide	external side of plasma membrane|integral to membrane	metal ion binding|tumor necrosis factor receptor activity			breast(2)|lung(1)	3		Colorectal(73;0.188)				CTCTTCGCGTCTGTGGCCCTG	0.408									Paget_Disease_of_Bone				93	232					0	0	1	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60230367	60230367	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:60230367C>T	uc002lip.3	+	9	1676	c.1676C>T	c.(1675-1677)TCG>TTG	p.S559L	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Missense_Mutation_p.S29L	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	559					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						TGTGTGACCTCGGCTGACCAG	0.428													23	76					0	0	1	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60241837	60241837	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:60241837C>T	uc002lip.3	+	13	2523	c.2523C>T	c.(2521-2523)ATC>ATT	p.I841I	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Silent_p.I311I	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	841					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						GCCTGAGCATCGCATCACCAA	0.507													26	90					0	0	1	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60242078	60242078	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:60242078C>T	uc002lip.3	+	13	2764	c.2764C>T	c.(2764-2766)CCC>TCC	p.P922S	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Missense_Mutation_p.P392S	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	922					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						ACCAGGCTCTCCCCTTGCTGC	0.617													24	49					0	0	1	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60242139	60242139	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:60242139C>T	uc002lip.3	+	13	2825	c.2825C>T	c.(2824-2826)TCT>TTT	p.S942F	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Missense_Mutation_p.S412F	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	942					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						GCAGCAACTTCTCCCCAGCCA	0.652													8	106					0	0	1	0	0
PHLPP1	23239	broad.mit.edu	37	18	60645858	60645858	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:60645858C>T	uc002lis.2	+	18	2990	c.2812C>T	c.(2812-2814)CCC>TCC	p.P938S		NM_194449	NP_919431	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein	1450					apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity				0						CATCTTTCCTCCCTCAGTGAA	0.627													9	35					0	0	1	0	0
SERPINB5	5268	broad.mit.edu	37	18	61154191	61154191	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61154191G>A	uc002liz.3	+	3	323	c.181G>A	c.(181-183)GAA>AAA	p.E61K	SERPINB5_uc002liy.2_Missense_Mutation_p.E61K	NM_002639	NP_002630	P36952	SPB5_HUMAN	serine (or cysteine) proteinase inhibitor, clade	61					cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1						TCTTCATTTTGAAAATGTCAA	0.388													34	79					0	0	1	0	0
SERPINB5	5268	broad.mit.edu	37	18	61156597	61156597	+	Silent	SNP	G	A	A	rs141561710	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61156597G>A	uc002liz.3	+	4	466	c.324G>A	c.(322-324)ACG>ACA	p.T108T	SERPINB5_uc002liy.2_Silent_p.T108T	NM_002639	NP_002630	P36952	SPB5_HUMAN	serine (or cysteine) proteinase inhibitor, clade	108					cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1						TCAGCTCTACGAAGAGACCGT	0.353													8	64					0	0	1	0	0
SERPINB12	89777	broad.mit.edu	37	18	61223558	61223558	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61223558G>A	uc010xen.1	+	1	166	c.166G>A	c.(166-168)GAG>AAG	p.E56K	SERPINB12_uc010xeo.1_Missense_Mutation_p.E56K	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	56					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						TCAGATTGATGAGGTACGTGT	0.498													60	116					0	0	1	0	0
SERPINB12	89777	broad.mit.edu	37	18	61226934	61226934	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61226934G>A	uc010xen.1	+	3	367	c.367G>A	c.(367-369)GAA>AAA	p.E123K	SERPINB12_uc010xeo.1_Missense_Mutation_p.E143K	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	123					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						TGGAGAGCAGGAATTCCCAAT	0.463													11	123					0	0	1	0	0
SERPINB12	89777	broad.mit.edu	37	18	61231327	61231327	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61231327G>A	uc010xen.1	+	5	619	c.619G>A	c.(619-621)GTG>ATG	p.V207M	SERPINB12_uc010xeo.1_Missense_Mutation_p.V227M	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	207					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						TGAAAACACGGTGGATGCACC	0.408													8	95					0	0	1	0	0
SERPINB13	5275	broad.mit.edu	37	18	61255990	61255990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61255990C>T	uc002ljc.2	+	2	257	c.89C>T	c.(88-90)TCC>TTC	p.S30F	SERPINB13_uc002ljd.2_5'UTR|SERPINB13_uc010xep.1_Missense_Mutation_p.S30F|SERPINB13_uc010xeq.1_5'UTR|SERPINB13_uc010xer.1_5'UTR	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	30					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						ATCTTCTTTTCCCCTGTGGGC	0.532													15	56					0	0	1	0	0
SERPINB13	5275	broad.mit.edu	37	18	61261588	61261588	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61261588G>A	uc002ljc.2	+	6	641	c.473_splice	c.e6-1	p.E158_splice	SERPINB13_uc002ljd.2_Splice_Site_p.E22_splice|SERPINB13_uc010xep.1_Splice_Site_p.E167_splice|SERPINB13_uc010xeq.1_Splice_Site|SERPINB13_uc010xer.1_Splice_Site	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade						regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						TTCATTTGCAGAAAAAATCAA	0.383													10	45					0	0	1	0	0
SERPINB13	5275	broad.mit.edu	37	18	61262370	61262370	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61262370C>T	uc002ljc.2	+	7	891	c.723C>T	c.(721-723)GAC>GAT	p.D241D	SERPINB13_uc002ljd.2_Silent_p.D105D|SERPINB13_uc010xep.1_Silent_p.D250D|SERPINB13_uc010xeq.1_Silent_p.D62D|SERPINB13_uc010xer.1_Silent_p.D62D	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	241					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						AAAACAACGACCTAAGCATGT	0.428													41	108					0	0	1	0	0
SERPINB13	5275	broad.mit.edu	37	18	61264576	61264576	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61264576C>T	uc002ljc.2	+	8	1323	c.1155C>T	c.(1153-1155)TTC>TTT	p.F385F	SERPINB13_uc002ljd.2_Silent_p.F249F|SERPINB13_uc010xep.1_Silent_p.F394F|SERPINB13_uc010xeq.1_Silent_p.F206F|SERPINB13_uc010xer.1_Silent_p.F206F	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	385					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						TCCTCTTCTTCGGCAGATTTT	0.423													47	97					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61305062	61305062	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61305062G>A	uc002ljf.2	-	8	1150	c.1064C>T	c.(1063-1065)TCA>TTA	p.S355L	SERPINB4_uc002lje.2_Missense_Mutation_p.S334L|SERPINB4_uc002ljg.2_Missense_Mutation_p.S355L	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	355		Reactive bond.			immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TGAAGGAGATGATAATTCGAC	0.448													42	107					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61310721	61310721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61310721G>A	uc002ljf.2	-	2	177	c.91C>T	c.(91-93)CCT>TCT	p.P31S	SERPINB4_uc002lje.2_Missense_Mutation_p.P31S|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	31					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						ATGCTGATAGGGGAATAGAAG	0.423													39	184					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61310809	61310809	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61310809C>T	uc002ljf.2	-	2	89	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SERPINB4_uc002lje.2_Missense_Mutation_p.M1I|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	1					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TGAGTGAATTCATGGTGAACT	0.373													46	194					0	0	1	0	0
SERPINB3	6317	broad.mit.edu	37	18	61323156	61323157	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61323156_61323157CC>TT	uc002lji.2	-	8	1051_1052	c.907_908GG>AA	c.(907-909)GGA>AAA	p.G303K	SERPINB4_uc002ljg.2_Intron|SERPINB3_uc010dqa.2_Missense_Mutation_p.G251K	NM_006919	NP_008850	P29508	SPB3_HUMAN	serine (or cysteine) proteinase inhibitor, clade	303					regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ATCCACCATTCCCATGGTTCTC	0.505													27	121					0	0	1	0	0
SERPINB3	6317	broad.mit.edu	37	18	61323175	61323175	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61323175C>T	uc002lji.2	-	8	1033	c.889G>A	c.(889-891)GAC>AAC	p.D297N	SERPINB4_uc002ljg.2_Intron|SERPINB3_uc010dqa.2_Missense_Mutation_p.D245N	NM_006919	NP_008850	P29508	SPB3_HUMAN	serine (or cysteine) proteinase inhibitor, clade	297					regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CTCAACGTGTCCTTGAGGTCA	0.488													25	119					0	0	1	0	0
SERPINB11	89778	broad.mit.edu	37	18	61387373	61387373	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61387373C>T	uc002ljk.3	+	7	664	c.602C>T	c.(601-603)CCT>CTT	p.P201L	SERPINB11_uc010xes.1_Missense_Mutation_p.P26L|SERPINB11_uc010dqd.2_Missense_Mutation_p.P87L|SERPINB11_uc002ljj.3_Missense_Mutation_p.P87L|SERPINB11_uc010dqe.2_Intron|SERPINB11_uc010dqf.2_Intron	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	201					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				GTTAAAAGTCCTTTTCAGCTA	0.328													4	49					0	0	1	0	0
SERPINB11	89778	broad.mit.edu	37	18	61390475	61390475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61390475G>A	uc002ljk.3	+	9	1083	c.1021G>A	c.(1021-1023)GAA>AAA	p.E341K	SERPINB11_uc010xes.1_Missense_Mutation_p.E166K|SERPINB11_uc010dqd.2_Intron|SERPINB11_uc002ljj.3_Missense_Mutation_p.E227K|SERPINB11_uc010dqe.2_Missense_Mutation_p.E140K|SERPINB11_uc010dqf.2_Missense_Mutation_p.E139K	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	341	RCL (By similarity).				regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				GGATGTCAGCGAAGAGGGCAC	0.498													10	53					0	0	1	0	0
SERPINB7	8710	broad.mit.edu	37	18	61463546	61463546	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61463546G>A	uc002ljl.2	+	5	479	c.383G>A	c.(382-384)CGA>CAA	p.R128Q	SERPINB7_uc002ljm.2_Missense_Mutation_p.R128Q|SERPINB7_uc010xet.1_Missense_Mutation_p.R111Q|SERPINB7_uc010dqg.2_Missense_Mutation_p.R128Q	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	128					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				AAAGTGGAGCGAGTTGACTTT	0.328													11	62					0	0	1	0	0
SERPINB7	8710	broad.mit.edu	37	18	61465948	61465948	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61465948G>A	uc002ljl.2	+	6	661	c.565G>A	c.(565-567)GAA>AAA	p.E189K	SERPINB7_uc002ljm.2_Missense_Mutation_p.E189K|SERPINB7_uc010xet.1_Missense_Mutation_p.E172K|SERPINB7_uc010dqg.2_Missense_Mutation_p.E189K	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	189					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				CACCAAGAGCGAAACCATAAA	0.423													40	85					0	0	1	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471630	61471630	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61471630G>A	uc002ljl.2	+	8	1000	c.904G>A	c.(904-906)GAA>AAA	p.E302K	SERPINB7_uc002ljm.2_Missense_Mutation_p.E302K|SERPINB7_uc010xet.1_Missense_Mutation_p.E285K|SERPINB7_uc010dqg.2_Missense_Mutation_p.E302K	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	302					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				TATCTTTGATGAATCCAAAGC	0.408													26	55					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61562572	61562572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61562572C>T	uc010xeu.1	+	4	576	c.243C>T	c.(241-243)TTC>TTT	p.F81F	SERPINB2_uc002ljo.2_Silent_p.F81F|SERPINB2_uc010dqh.2_Silent_p.F11F|SERPINB2_uc002ljp.1_5'Flank|SERPINB2_uc002ljq.1_5'Flank	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	81					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	GCTGTGGGTTCATGCAGCAGA	0.433													70	135					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61564393	61564393	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61564393G>A	uc010xeu.1	+	5	690	c.357G>A	c.(355-357)GGG>GGA	p.G119G	SERPINB2_uc002ljo.2_Silent_p.G119G|SERPINB2_uc010dqh.2_Silent_p.G49G|SERPINB2_uc002ljp.1_5'UTR|SERPINB2_uc002ljq.1_5'UTR	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	119					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	CATCCACAGGGAATTATTTAC	0.408													37	79					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61570356	61570356	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61570356C>T	uc010xeu.1	+	9	1398	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	SERPINB2_uc002ljo.2_Silent_p.F355F|SERPINB2_uc010dqh.2_Silent_p.F285F|SERPINB2_uc002ljp.1_Intron|SERPINB2_uc002ljq.1_Intron	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	355					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	CTGAAGTGTTCCACCAAGCCA	0.542													27	83					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61585240	61585240	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61585240C>T	uc010xev.1	+	4	366	c.276C>T	c.(274-276)TTC>TTT	p.F92F	SERPINB10_uc010xew.1_Silent_p.F92F	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	92						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				ACTCTGATTTCCAAACACTTA	0.353													22	71					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61587119	61587119	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61587119G>A	uc010xev.1	+	5	560	c.470G>A	c.(469-471)TGG>TAG	p.W157*	SERPINB10_uc010xew.1_Nonsense_Mutation_p.W157*	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	157						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				ATCAACTCTTGGGTTGAAAGA	0.393													28	77					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61597340	61597340	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61597340G>A	uc010xev.1	+	6	642	c.552G>A	c.(550-552)GTG>GTA	p.V184V	SERPINB10_uc010xew.1_Silent_p.V184V	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	184						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				TGATTCTGGTGAACGCCCTAT	0.388													7	91					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61602272	61602272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61602272C>T	uc010xev.1	+	8	1080	c.990C>T	c.(988-990)AAC>AAT	p.N330N	SERPINB10_uc010xew.1_Silent_p.N330N	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	330						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				CAGCAAGAAACCTATTTTTGT	0.413													30	55					0	0	1	0	0
SERPINB8	5271	broad.mit.edu	37	18	61652454	61652454	+	Missense_Mutation	SNP	C	T	T	rs141770995		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:61652454C>T	uc002ljv.2	+	6	864	c.695C>T	c.(694-696)CCC>CTC	p.P232L	SERPINB8_uc002ljt.2_Missense_Mutation_p.P232L|SERPINB8_uc002lju.2_Missense_Mutation_p.P232L|SERPINB8_uc010xex.1_Missense_Mutation_p.P50L	NM_198833	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	232					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)				ATTCTGCTTCCCGATGACAAC	0.473													14	51					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63477198	63477198	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:63477198C>T	uc002ljz.2	+	3	794	c.469C>T	c.(469-471)CCA>TCA	p.P157S	CDH7_uc002lka.2_Missense_Mutation_p.P157S|CDH7_uc002lkb.2_Missense_Mutation_p.P157S	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	157	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				TTTGGATGGCCCATACACGGC	0.463													57	133					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63525115	63525115	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:63525115C>T	uc002ljz.2	+	8	1624	c.1299C>T	c.(1297-1299)GTC>GTT	p.V433V	CDH7_uc002lka.2_Silent_p.V433V|CDH7_uc002lkb.2_Silent_p.V433V	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	433	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				ACAGTGGGGTCATCACAACTG	0.388													28	114					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63547747	63547747	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:63547747G>A	uc002ljz.2	+	12	2300	c.1975G>A	c.(1975-1977)GGA>AGA	p.G659R	CDH7_uc002lkb.2_Missense_Mutation_p.G659R	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	659	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CGAGGGCGGGGGAGAGGAGGA	0.478													23	70					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63548115	63548115	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:63548115G>A	uc002ljz.2	+	12	2668	c.2343G>A	c.(2341-2343)GAG>GAA	p.E781E	CDH7_uc002lkb.2_Silent_p.E781E	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	781	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CTGGCCAAGAGAGTTTGTACT	0.368													16	85					0	0	1	0	0
CDH19	28513	broad.mit.edu	37	18	64202268	64202268	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:64202268C>T	uc002lkc.1	-	8	1429	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Missense_Mutation_p.E431K|CDH19_uc002lkd.2_Missense_Mutation_p.E431K	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	431	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				GCACTGATTTCACGATCCAGT	0.328													14	66					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65178594	65178594	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:65178594C>T	uc002lke.1	-	2	4506	c.3282G>A	c.(3280-3282)TTG>TTA	p.L1094L		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	1084						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				ATTCTTTCCTCAATGGTTCAT	0.368													6	50					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65178682	65178682	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:65178682G>A	uc002lke.1	-	2	4418	c.3194C>T	c.(3193-3195)CCA>CTA	p.P1065L		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	1055						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				TAAATGCTCTGGTACATTCTT	0.358													26	50					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65180891	65180891	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:65180891G>A	uc002lke.1	-	2	2209	c.985C>T	c.(985-987)CTT>TTT	p.L329F		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	319						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				CCAGGTAAAAGGGTGGCATAA	0.383													15	123					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65180988	65180988	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:65180988G>A	uc002lke.1	-	2	2112	c.888C>T	c.(886-888)TCC>TCT	p.S296S		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	286						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				ACTGTGTGACGGATTTAGCTG	0.388													53	90					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65181297	65181297	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:65181297A>C	uc002lke.1	-	2	1803	c.579T>G	c.(577-579)TTT>TTG	p.F193L		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	183						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				AGTTATATAAAAAGTCAAAGG	0.403													28	51					0	0	1	0	0
CCDC102B	79839	broad.mit.edu	37	18	66504220	66504220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:66504220C>T	uc002lkk.2	+	4	443	c.220C>T	c.(220-222)CGC>TGC	p.R74C	CCDC102B_uc002lki.2_Missense_Mutation_p.R74C|CCDC102B_uc002lkj.1_Missense_Mutation_p.R74C	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	74	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				TGAAGAACTTCGCCTGCGGGA	0.483													33	173					0	0	1	0	0
DOK6	220164	broad.mit.edu	37	18	67406248	67406248	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:67406248G>A	uc002lkl.2	+	6	837	c.647G>A	c.(646-648)GGA>GAA	p.G216E		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	216	IRS-type PTB.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				ACAAGGGAAGGAGAAATGATC	0.443													45	123					0	0	1	0	0
DOK6	220164	broad.mit.edu	37	18	67508495	67508495	+	Missense_Mutation	SNP	C	T	T	rs76231229	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:67508495C>T	uc002lkl.2	+	8	1062	c.872C>T	c.(871-873)TCG>TTG	p.S291L		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	291							insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				GGGTTTGGTTCGTCAAAGATG	0.443													54	128					0	0	1	0	0
CD226	10666	broad.mit.edu	37	18	67540457	67540457	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:67540457G>A	uc010dqo.2	-	4	1200	c.753C>T	c.(751-753)CTC>CTT	p.L251L	CD226_uc002lkm.3_Silent_p.L251L	NM_006566	NP_006557	Q15762	CD226_HUMAN	CD226 molecule precursor	251	Extracellular (Potential).				cell adhesion|cell recognition|positive regulation of Fc receptor mediated stimulatory signaling pathway|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	cell surface|integral to plasma membrane|membrane raft	cell adhesion molecule binding|integrin binding|protein kinase binding|receptor activity				0		Esophageal squamous(42;0.129)				CAGCCACAAAGAGGGTATATT	0.363													63	137					0	0	1	0	0
NETO1	81832	broad.mit.edu	37	18	70461399	70461399	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:70461399C>T	uc002lkw.2	-	6	876	c.592G>A	c.(592-594)GAG>AAG	p.E198K	NETO1_uc002lkx.1_Missense_Mutation_p.E197K|NETO1_uc002lky.1_Missense_Mutation_p.E198K	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	198	CUB 2.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		TCAACAGCCTCGCTAGCAGTA	0.458													18	143					0	0	1	0	0
NETO1	81832	broad.mit.edu	37	18	70461449	70461449	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:70461449C>T	uc002lkw.2	-	6	826	c.542G>A	c.(541-543)GGA>GAA	p.G181E	NETO1_uc002lkx.1_Missense_Mutation_p.G180E|NETO1_uc002lky.1_Missense_Mutation_p.G181E	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	181	CUB 2.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity	p.G181R(1)		ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		CTCCACAATTCCTTCGGAACC	0.428													34	65					0	0	1	0	0
NETO1	81832	broad.mit.edu	37	18	70526179	70526179	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:70526179G>A	uc002lkw.2	-	4	635	c.351C>T	c.(349-351)TTC>TTT	p.F117F	NETO1_uc002lkx.1_Silent_p.F116F|NETO1_uc002lky.1_Silent_p.F117F|NETO1_uc002lkz.2_Silent_p.F116F	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	117	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		GTTGTCCACAGAAACGTCCAA	0.378													28	73					0	0	1	0	0
NETO1	81832	broad.mit.edu	37	18	70526220	70526220	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:70526220G>A	uc002lkw.2	-	4	594	c.310C>T	c.(310-312)CGA>TGA	p.R104*	NETO1_uc002lkx.1_Nonsense_Mutation_p.R103*|NETO1_uc002lky.1_Nonsense_Mutation_p.R104*|NETO1_uc002lkz.2_Nonsense_Mutation_p.R103*	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	104	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		GGTCCATCTCGAACTTCAATA	0.378													29	67					0	0	1	0	0
FBXO15	201456	broad.mit.edu	37	18	71740870	71740870	+	Silent	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:71740870G>C	uc002lle.2	-	10	1467	c.1131C>G	c.(1129-1131)CCC>CCG	p.P377P	FBXO15_uc002lld.2_RNA|FBXO15_uc002llf.2_Silent_p.P453P	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	377										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		AGCTGTCAGAGGGTGTGGCAG	0.522													63	212					0	0	1	0	0
FBXO15	201456	broad.mit.edu	37	18	71740883	71740883	+	Missense_Mutation	SNP	G	A	A	rs146975565		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:71740883G>A	uc002lle.2	-	10	1454	c.1118C>T	c.(1117-1119)TCG>TTG	p.S373L	FBXO15_uc002lld.2_RNA|FBXO15_uc002llf.2_Missense_Mutation_p.S449L	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	373										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		TGTGGCAGGCGATCTCAGGCA	0.502													55	197					0	0	1	0	0
FBXO15	201456	broad.mit.edu	37	18	71796724	71796724	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:71796724G>A	uc002lle.2	-	5	809	c.473C>T	c.(472-474)CCA>CTA	p.P158L	FBXO15_uc002llf.2_Missense_Mutation_p.P234L	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	158										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		TGCTAGGCATGGCCATTTTTT	0.373													15	37					0	0	1	0	0
FBXO15	201456	broad.mit.edu	37	18	71797676	71797676	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:71797676G>A	uc002lle.2	-	4	658	c.322C>T	c.(322-324)CCA>TCA	p.P108S	FBXO15_uc002llf.2_Missense_Mutation_p.P184S	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	108										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		GTCTTAACTGGAAGGCCTGTG	0.433													20	59					0	0	1	0	0
CNDP1	84735	broad.mit.edu	37	18	72238431	72238431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:72238431G>A	uc002llq.2	+	7	978	c.767G>A	c.(766-768)AGA>AAA	p.R256K	CNDP1_uc002lls.2_Missense_Mutation_p.R59K	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	256					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		GTGAAATGCAGAGACCAGGAT	0.413													28	90					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72344257	72344257	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:72344257C>T	uc002llw.2	+	1	1339	c.1282C>T	c.(1282-1284)CGT>TGT	p.R428C	ZNF407_uc010xfc.1_Missense_Mutation_p.R428C|ZNF407_uc010dqu.1_Missense_Mutation_p.R428C|ZNF407_uc002llu.2_Missense_Mutation_p.R427C	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	428					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		TAATAGCTTTCGTCGACGAAG	0.423													15	81					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72344498	72344498	+	Missense_Mutation	SNP	C	T	T	rs77006793	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:72344498C>T	uc002llw.2	+	1	1580	c.1523C>T	c.(1522-1524)CCT>CTT	p.P508L	ZNF407_uc010xfc.1_Missense_Mutation_p.P508L|ZNF407_uc010dqu.1_Missense_Mutation_p.P508L|ZNF407_uc002llu.2_Missense_Mutation_p.P507L	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	508					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		AGTGCCCGTCCTCCGGACTCC	0.572													37	95					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72345521	72345521	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:72345521C>T	uc002llw.2	+	1	2603	c.2546C>T	c.(2545-2547)TCA>TTA	p.S849L	ZNF407_uc010xfc.1_Missense_Mutation_p.S849L|ZNF407_uc010dqu.1_Missense_Mutation_p.S849L|ZNF407_uc002llu.2_Missense_Mutation_p.S848L	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	849					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GGTAACATCTCACGGACGTGT	0.438													18	74					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72346770	72346770	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:72346770C>T	uc002llw.2	+	1	3852	c.3795C>T	c.(3793-3795)CTC>CTT	p.L1265L	ZNF407_uc010xfc.1_Silent_p.L1265L|ZNF407_uc010dqu.1_Silent_p.L1265L|ZNF407_uc002llu.2_Silent_p.L1264L	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1265					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GCCCTGTGCTCGTTGTGACAA	0.567													10	29					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72346877	72346877	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:72346877C>T	uc002llw.2	+	1	3959	c.3902C>T	c.(3901-3903)CCC>CTC	p.P1301L	ZNF407_uc010xfc.1_Missense_Mutation_p.P1301L|ZNF407_uc010dqu.1_Missense_Mutation_p.P1301L|ZNF407_uc002llu.2_Missense_Mutation_p.P1300L	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1301					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		CAAGAAGATCCCGTTCTGGGG	0.448													6	32					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72775173	72775173	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:72775173C>T	uc002llw.2	+	8	5553	c.5496C>T	c.(5494-5496)AGC>AGT	p.S1832S		NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1832					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		AGACAGACAGCCCCTTCACCG	0.622													45	166					0	0	1	0	0
TSHZ1	10194	broad.mit.edu	37	18	72998408	72998408	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:72998408C>T	uc002lly.2	+	2	1474	c.911C>T	c.(910-912)CCC>CTC	p.P304L		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	349						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		AAACTGGTCCCCTCCACCAAA	0.592													23	67					0	0	1	0	0
ZNF516	9658	broad.mit.edu	37	18	74090859	74090859	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:74090859C>T	uc010dqx.1	-	5	3445	c.3210G>A	c.(3208-3210)GCG>GCA	p.A1070A	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	1070					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		GGTAGAGGGTCGCAAAGTCCT	0.592													18	67					0	0	1	0	0
ZNF516	9658	broad.mit.edu	37	18	74092095	74092095	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:74092095C>T	uc010dqx.1	-	3	2210	c.1975G>A	c.(1975-1977)GAG>AAG	p.E659K	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	659					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		CTAGAAGTCTCTCTGCTACTG	0.522													24	51					0	0	1	0	0
ZNF516	9658	broad.mit.edu	37	18	74092231	74092231	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:74092231G>A	uc010dqx.1	-	3	2074	c.1839C>T	c.(1837-1839)TCC>TCT	p.S613S	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	613					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		TCACCTCTTCGGAAAAGCAGC	0.557													20	46					0	0	1	0	0
ZNF516	9658	broad.mit.edu	37	18	74153399	74153399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:74153399G>A	uc010dqx.1	-	2	1847	c.1612C>T	c.(1612-1614)CGC>TGC	p.R538C	ZNF516_uc002lme.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	538					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		CGCGCGCGGCGATGCACGCGT	0.701													14	19					0	0	1	0	0
ZNF516	9658	broad.mit.edu	37	18	74154189	74154189	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:74154189G>A	uc010dqx.1	-	2	1057	c.822C>T	c.(820-822)TTC>TTT	p.F274F	ZNF516_uc002lme.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	274					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		AGCCGTGGTCGAAGGAGCCCC	0.647													14	31					0	0	1	0	0
ZNF236	7776	broad.mit.edu	37	18	74593462	74593462	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:74593462C>T	uc002lmi.2	+	9	1603	c.1405C>T	c.(1405-1407)CTA>TTA	p.L469L	ZNF236_uc002lmj.2_RNA|ZNF236_uc002lmk.1_Silent_p.L469L	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	469					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		GTCACCGTTTCTACCTGGTAA	0.388													11	32					0	0	1	0	0
ZNF236	7776	broad.mit.edu	37	18	74607058	74607058	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:74607058A>G	uc002lmi.2	+	10	1699	c.1501A>G	c.(1501-1503)ATC>GTC	p.I501V	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	501	C2H2-type 10.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		GGTCCGCCACATCCGCATCCA	0.647													44	130					0	0	1	0	0
ZNF236	7776	broad.mit.edu	37	18	74640034	74640034	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:74640034T>A	uc002lmi.2	+	25	4758	c.4560T>A	c.(4558-4560)TCT>TCA	p.S1520S	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	1520					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		CCTCGGGGTCTCCACAGGAAA	0.498													6	48					0	0	1	0	0
GALR1	2587	broad.mit.edu	37	18	74968155	74968155	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:74968155G>A	uc002lms.3	+	2	1205	c.708G>A	c.(706-708)AAG>AAA	p.K236K		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	236	Cytoplasmic (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		ACATGTCAAAGAAGTCTGAAG	0.348													25	74					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76752151	76752151	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:76752151G>A	uc002lmt.2	+	2	160	c.160G>A	c.(160-162)GAG>AAG	p.E54K	SALL3_uc010dra.2_5'Flank	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	54					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CAGCGTGTGCGAGAAATGCTG	0.687													5	18					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76753258	76753258	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:76753258C>T	uc002lmt.2	+	2	1267	c.1267C>T	c.(1267-1269)CGC>TGC	p.R423C	SALL3_uc010dra.2_Missense_Mutation_p.R30C	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	423	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCACAAATGCCGCTTCTGCGC	0.642													8	15					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76753646	76753646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:76753646C>T	uc002lmt.2	+	2	1655	c.1655C>T	c.(1654-1656)TCC>TTC	p.S552F	SALL3_uc010dra.2_Missense_Mutation_p.S159F	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	552					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCCAGCCGCTCCCCGCAGAGG	0.746													4	18					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76754413	76754413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:76754413G>A	uc002lmt.2	+	2	2422	c.2422G>A	c.(2422-2424)GAC>AAC	p.D808N	SALL3_uc010dra.2_Missense_Mutation_p.D415N	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	808				D -> N (in Ref. 2; CAB65124).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CATGGAGGACGACGCTGAGCT	0.652													12	34					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76754602	76754602	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:76754602G>A	uc002lmt.2	+	2	2611	c.2611G>A	c.(2611-2613)GAG>AAG	p.E871K	SALL3_uc010dra.2_Missense_Mutation_p.E478K	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	871					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CGGGTCCGGGGAGAGTGACCG	0.677													15	63					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76755238	76755238	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:76755238G>A	uc002lmt.2	+	2	3247	c.3247G>A	c.(3247-3249)GGC>AGC	p.G1083S	SALL3_uc010dra.2_Missense_Mutation_p.G618S	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	1083					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCTGCCCGCGGGCGTCCAGGT	0.711													11	12					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76756929	76756929	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:76756929G>A	uc002lmt.2	+	3	3510	c.3510G>A	c.(3508-3510)GCG>GCA	p.A1170A	SALL3_uc010dra.2_Silent_p.A705A	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	1170					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		ACGCCCCCGCGAGACGCGGCC	0.627													10	24					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76757136	76757136	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:76757136C>T	uc002lmt.2	+	3	3717	c.3717C>T	c.(3715-3717)CCC>CCT	p.P1239P	SALL3_uc010dra.2_Silent_p.P774P	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	1239					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCGGCATCCCCCAGCTCCCCG	0.617													35	161					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76757169	76757169	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:76757169C>T	uc002lmt.2	+	3	3750	c.3750C>T	c.(3748-3750)CTC>CTT	p.L1250L	SALL3_uc010dra.2_Silent_p.L785L	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	1250					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCAGCGCCCTCCCCCCTCTGG	0.622													54	150					0	0	1	0	0
NFATC1	4772	broad.mit.edu	37	18	77171000	77171000	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:77171000C>T	uc010xfg.1	+	2	1178	c.725C>T	c.(724-726)CCC>CTC	p.P242L	NFATC1_uc002lnc.1_Missense_Mutation_p.P242L|NFATC1_uc010xff.1_Missense_Mutation_p.P242L|NFATC1_uc002lnd.2_Missense_Mutation_p.P242L|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Missense_Mutation_p.P242L|NFATC1_uc010xfi.1_Missense_Mutation_p.P229L|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Missense_Mutation_p.P229L|NFATC1_uc002lng.2_Missense_Mutation_p.P229L|NFATC1_uc010xfk.1_Missense_Mutation_p.P229L	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	242	3 X SP repeats.|2.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		TCCACCTCGCCCCGCGCCAGC	0.711													6	39					0	0	1	0	0
CTDP1	9150	broad.mit.edu	37	18	77456024	77456024	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:77456024C>T	uc002lnh.1	+	3	593	c.446C>T	c.(445-447)ACC>ATC	p.T149I	CTDP1_uc002lni.1_Missense_Mutation_p.T149I|CTDP1_uc010drd.1_Missense_Mutation_p.T149I	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	149					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		TCCACGGCGACCGTGTCCATG	0.622													10	27					0	0	1	0	0
CTDP1	9150	broad.mit.edu	37	18	77457903	77457903	+	Missense_Mutation	SNP	G	A	A	rs138457062	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:77457903G>A	uc002lnh.1	+	4	683	c.536G>A	c.(535-537)CGA>CAA	p.R179Q	CTDP1_uc002lni.1_Missense_Mutation_p.R179Q|CTDP1_uc010drd.1_Missense_Mutation_p.R179Q	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	179	FCP1 homology.				positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		CGACTGCACCGAAACCGGAAG	0.473													20	42					0	0	1	0	0
PQLC1	80148	broad.mit.edu	37	18	77679198	77679198	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:77679198G>A	uc002lnl.2	-	5	766	c.594C>T	c.(592-594)TCC>TCT	p.S198S	PQLC1_uc010dre.2_Silent_p.S115S|PQLC1_uc002lnk.2_Silent_p.S180S|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354	Q8N2U9	PQLC1_HUMAN	PQ loop repeat containing 1 isoform 1	198	PQ-loop 2.					integral to membrane				large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0212)|Melanoma(33;0.2)		OV - Ovarian serous cystadenocarcinoma(15;8.2e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0258)		TGCCCTCCGTGGACTGGTGGC	0.612													12	39					0	0	1	0	0
C18orf22	79863	broad.mit.edu	37	18	77797462	77797462	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:77797462G>A	uc002lns.2	+	3	472	c.334G>A	c.(334-336)GAA>AAA	p.E112K	C18orf22_uc010drh.2_Missense_Mutation_p.E112K|C18orf22_uc010dri.1_Intron	NM_024805	NP_079081	Q8N0V3	RBFA_HUMAN	hypothetical protein LOC79863 precursor	112					rRNA processing	mitochondrion					0		all_cancers(4;3.21e-14)|all_epithelial(4;7.11e-09)|all_lung(4;0.00366)|Lung NSC(4;0.00683)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0545)|all_hematologic(56;0.15)|Melanoma(33;0.2)		OV - Ovarian serous cystadenocarcinoma(15;6.46e-08)|BRCA - Breast invasive adenocarcinoma(31;0.00376)		GTGTACCCCTGAAGTGAGTCA	0.552													63	125					0	0	1	0	0
ADNP2	22850	broad.mit.edu	37	18	77896092	77896092	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr18:77896092C>T	uc002lnw.2	+	4	3251	c.2796C>T	c.(2794-2796)GCC>GCT	p.A932A		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	932					cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CTGCCATCGCCGTCCATTTGG	0.562													8	145					0	0	1	0	0
OR4F17	81099	broad.mit.edu	37	19	110706	110706	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:110706C>T	uc002loc.1	+	1	28	c.28C>T	c.(28-30)CTC>TTC	p.L10F	OR4F17_uc002lob.1_Missense_Mutation_p.L10F	NM_001005240	NP_001005240	Q8NGA8	O4F17_HUMAN	olfactory receptor, family 4, subfamily F,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTTTCTGGGTCTCTCTGATTC	0.393													69	507					0	0	1	0	0
PPAP2C	8612	broad.mit.edu	37	19	282190	282190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:282190G>A	uc002loi.2	-	5	760	c.661C>T	c.(661-663)CAC>TAC	p.H221Y	PPAP2C_uc002loh.2_Missense_Mutation_p.H242Y|PPAP2C_uc002loj.2_Missense_Mutation_p.H165Y	NM_003712	NP_003703	O43688	LPP2_HUMAN	phosphatidic acid phosphatase type 2C isoform 1	221					sphingolipid metabolic process	integral to membrane|plasma membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCGCTCCAGTGGTGTTTGTAA	0.587													18	33					0	0	1	0	0
PPAP2C	8612	broad.mit.edu	37	19	288132	288132	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:288132G>A	uc002loi.2	-	2	191	c.92C>T	c.(91-93)CCG>CTG	p.P31L	PPAP2C_uc002loh.2_Missense_Mutation_p.P52L|PPAP2C_uc002loj.2_5'UTR	NM_003712	NP_003703	O43688	LPP2_HUMAN	phosphatidic acid phosphatase type 2C isoform 1	31					sphingolipid metabolic process	integral to membrane|plasma membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCGCTTGTACGGGGCGTTCAC	0.627													36	77					0	0	1	0	0
MIER2	54531	broad.mit.edu	37	19	313576	313576	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:313576G>A	uc002lok.1	-	8	732	c.723C>T	c.(721-723)TTC>TTT	p.F241F		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	241	ELM2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCTGTACAGGAACTCCTCCA	0.632													48	124					0	0	1	0	0
MIER2	54531	broad.mit.edu	37	19	326596	326596	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:326596G>A	uc002lok.1	-	6	505	c.496C>T	c.(496-498)CGT>TGT	p.R166C		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	166					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCAGGAAACGAGCTTTGGGA	0.562													22	64					0	0	1	0	0
MIER2	54531	broad.mit.edu	37	19	327976	327976	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:327976G>A	uc002lok.1	-	4	266	c.257C>T	c.(256-258)CCC>CTC	p.P86L		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	86					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCATCAAAGGGCATGTCGTT	0.617													14	20					0	0	1	0	0
THEG	51298	broad.mit.edu	37	19	362409	362409	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:362409C>T	uc002lol.2	-	8	970	c.931G>A	c.(931-933)GAC>AAC	p.D311N	THEG_uc002lom.2_Missense_Mutation_p.D287N	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	311					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGCACTTGTCCGACTGAGCT	0.512													38	83					0	0	1	0	0
THEG	51298	broad.mit.edu	37	19	371314	371314	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:371314G>A	uc002lol.2	-	6	683	c.644C>T	c.(643-645)CCT>CTT	p.P215L	THEG_uc002lom.2_Missense_Mutation_p.P191L	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	215					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCCAGACAGGAGTCGTCCT	0.488													69	138					0	0	1	0	0
THEG	51298	broad.mit.edu	37	19	375943	375943	+	Missense_Mutation	SNP	C	T	T	rs141910884		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:375943C>T	uc002lol.2	-	1	67	c.28G>A	c.(28-30)GGG>AGG	p.G10R	THEG_uc002lom.2_Missense_Mutation_p.G10R	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	10					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCTGGTTCCCGAGTGACCTT	0.692													12	62					0	0	1	0	0
SHC2	25759	broad.mit.edu	37	19	422388	422388	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:422388G>A	uc002loq.3	-	11	1378	c.1378C>T	c.(1378-1380)CCC>TCC	p.P460S	SHC2_uc002lop.3_Missense_Mutation_p.P201S	NM_012435	NP_036567	P98077	SHC2_HUMAN	SHC (Src homology 2 domain containing)	460	CH1.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol					0		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTCCAAGGGAAGAGGGGCT	0.687													6	10					0	0	1	0	0
SHC2	25759	broad.mit.edu	37	19	430734	430734	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:430734G>A	uc002loq.3	-	9	1124	c.1124C>T	c.(1123-1125)TCT>TTT	p.S375F	SHC2_uc002lop.3_Missense_Mutation_p.S116F	NM_012435	NP_036567	P98077	SHC2_HUMAN	SHC (Src homology 2 domain containing)	375	CH1.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol					0		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATCTCTTAGAGAAGGAGATGG	0.647													8	29					0	0	1	0	0
ODF3L2	284451	broad.mit.edu	37	19	474630	474630	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:474630G>A	uc002lor.2	-	1	354	c.118C>T	c.(118-120)CTG>TTG	p.L40L	ODF3L2_uc010drp.2_Silent_p.L40L	NM_182577	NP_872383	Q3SX64	OD3L2_HUMAN	outer dense fiber of sperm tails 3-like 2	40											0						CCGTTCTCCAGGGTGGCCGTC	0.672													5	12					0	0	1	0	0
CDC34	997	broad.mit.edu	37	19	532077	532078	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:532077_532078CC>TT	uc002lov.2	+	1	345_346	c.146_147CC>TT	c.(145-147)CCC>CTT	p.P49L		NM_004359	NP_004350	P49427	UB2R1_HUMAN	ubiquitin-conjugating enzyme Cdc34	49					DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|negative regulation of cAMP-mediated signaling|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination	cytoplasm|nucleus	ATP binding|protein binding|ubiquitin-protein ligase activity				0		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTCGGGCCCCCCAACACCTACT	0.683													3	12					0	0	1	0	0
HCN2	610	broad.mit.edu	37	19	603589	603589	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:603589C>T	uc002lpe.2	+	2	731	c.678C>T	c.(676-678)CTC>CTT	p.L226L		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	226	Helical; Name=Segment S1; (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGGAAACCTCATCATCATCC	0.612													13	28					0	0	1	0	0
POLRMT	5442	broad.mit.edu	37	19	625222	625222	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:625222G>A	uc002lpf.1	-	4	911	c.855C>T	c.(853-855)TTC>TTT	p.F285F		NM_005035	NP_005026	O00411	RPOM_HUMAN	mitochondrial DNA-directed RNA polymerase	285					transcription initiation from mitochondrial promoter	mitochondrial nucleoid	DNA binding|DNA-directed RNA polymerase activity|protein binding			ovary(1)|pancreas(1)	2		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTTCACCATGAATAACACAT	0.622													27	77					0	0	1	0	0
C19orf21	126353	broad.mit.edu	37	19	757826	757826	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:757826G>A	uc002lpo.2	+	2	963	c.880G>A	c.(880-882)GAG>AAG	p.E294K		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	294										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GACGCCCATCGAGCGGGAGAT	0.667													9	66					0	0	1	0	0
C19orf21	126353	broad.mit.edu	37	19	757886	757886	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:757886C>T	uc002lpo.2	+	2	1023	c.940C>T	c.(940-942)CGG>TGG	p.R314W		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	314										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGGGGGCTTCGGCAGGCAAC	0.687													15	24					0	0	1	0	0
LPPR3	79948	broad.mit.edu	37	19	815761	815761	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:815761C>T	uc002lpx.1	-	3	230	c.166G>A	c.(166-168)GAC>AAC	p.D56N	LPPR3_uc010dru.1_5'Flank|LPPR3_uc002lpw.1_Missense_Mutation_p.D56N|LPPR3_uc002lpy.1_5'UTR	NM_024888	NP_079164	Q6T4P5	LPPR3_HUMAN	plasticity-related protein 2	56						integral to membrane	phosphatidate phosphatase activity				0						AGAGTGCGGTCATAGCACTGG	0.617													7	31					0	0	1	0	0
AZU1	566	broad.mit.edu	37	19	828354	828354	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:828354C>T	uc002lpz.1	+	2	199	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001700	NP_001691	P20160	CAP7_HUMAN	azurocidin 1 preproprotein	61	Peptidase S1.|Hydrophobic.|Possesses antibiotic activity.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cellular extravasation|defense response to Gram-negative bacterium|glial cell migration|induction of positive chemotaxis|inflammatory response|macrophage chemotaxis|microglial cell activation|monocyte activation|positive regulation of cell adhesion|positive regulation of fractalkine biosynthetic process|positive regulation of interleukin-1 beta biosynthetic process|positive regulation of MHC class II biosynthetic process|positive regulation of phagocytosis|positive regulation of tumor necrosis factor biosynthetic process|proteolysis|regulation of vascular permeability	azurophil granule|extracellular region	heparin binding|serine-type endopeptidase activity|toxin binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGCCCGCTTCGTGATGACCG	0.672													17	82					0	0	1	0	0
PRTN3	5657	broad.mit.edu	37	19	841055	841055	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:841055C>T	uc002lqa.1	+	1	71	c.47C>T	c.(46-48)GCC>GTC	p.A16V		NM_002777	NP_002768	P24158	PRTN3_HUMAN	myeloblastin	16					collagen catabolic process|positive regulation of cell proliferation|proteolysis		protein binding|serine-type endopeptidase activity			ovary(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGCTGCTGGCCTTGCTGCTG	0.652													7	18					0	0	1	0	0
ELANE	1991	broad.mit.edu	37	19	856138	856138	+	Missense_Mutation	SNP	C	T	T	rs143579306	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:856138C>T	uc002lqb.2	+	5	816	c.778C>T	c.(778-780)CCG>TCG	p.P260S		NM_001972	NP_001963	P08246	ELNE_HUMAN	neutrophil elastase preproprotein	260					cellular calcium ion homeostasis|negative regulation of chemokine biosynthetic process|negative regulation of chemotaxis|negative regulation of inflammatory response|negative regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of MAP kinase activity|positive regulation of smooth muscle cell proliferation|protein catabolic process|proteolysis|response to UV	cell surface|extracellular region|stored secretory granule	bacterial cell surface binding|cytokine binding|heparin binding			pancreas(1)	1					Alpha-1-proteinase inhibitor(DB00058)|Filgrastim(DB00099)|Pegfilgrastim(DB00019)	CCCCCGGGACCCGGACCCGGC	0.612									Kostmann_syndrome				51	186					0	0	1	0	0
MED16	10025	broad.mit.edu	37	19	868150	868150	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:868150G>A	uc002lqd.1	-	16	2736	c.2585C>T	c.(2584-2586)CCC>CTC	p.P862L	MED16_uc010drw.1_3'UTR|MED16_uc002lqe.2_3'UTR|MED16_uc002lqf.2_3'UTR	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	862					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGGGTCCTGGGAGAGTGGTG	0.682													5	17					0	0	1	0	0
WDR18	57418	broad.mit.edu	37	19	990989	990989	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:990989C>T	uc002lqm.1	+	5	761	c.735C>T	c.(733-735)TTC>TTT	p.F245F	WDR18_uc002lqn.1_RNA|WDR18_uc010drx.1_Silent_p.F208F|WDR18_uc010dry.1_Silent_p.F245F	NM_024100	NP_077005	Q9BV38	WDR18_HUMAN	WD repeat domain 18	245	WD 5.									skin(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCGACCTCTTCACCTGGGTGA	0.652													15	34					0	0	1	0	0
GRIN3B	116444	broad.mit.edu	37	19	1005273	1005273	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1005273C>T	uc002lqo.1	+	3	1773	c.1773C>T	c.(1771-1773)TTC>TTT	p.F591F		NM_138690	NP_619635	O60391	NMD3B_HUMAN	glutamate receptor, ionotropic,	591	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|protein insertion into membrane|regulation of calcium ion transport	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|ionotropic glutamate receptor activity|neurotransmitter receptor activity				0		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Glycine(DB00145)|L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	CCGCGCTCTTCCTCACCGTGT	0.667													22	72					0	0	1	0	0
CNN2	1265	broad.mit.edu	37	19	1037846	1037846	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1037846C>T	uc002lqu.2	+	7	1240	c.877C>T	c.(877-879)CCG>TCG	p.P293S	ABCA7_uc002lqw.3_5'Flank|CNN2_uc002lqv.2_Missense_Mutation_p.P254S|CNN2_uc010xgb.1_Missense_Mutation_p.P282S|CNN2_uc010xgc.1_Missense_Mutation_p.P314S|ABCA7_uc010dsa.2_5'Flank	NM_004368	NP_004359	Q99439	CNN2_HUMAN	calponin 2 isoform a	293					actomyosin structure organization|cellular response to mechanical stimulus|regulation of actin filament-based process	cell-cell junction|stress fiber	actin binding|calmodulin binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGCCCGGACCCGGGGGAGGT	0.657													33	97					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1047173	1047173	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1047173C>T	uc002lqw.3	+	15	2094	c.1863C>T	c.(1861-1863)CCC>CCT	p.P621P	ABCA7_uc010dsb.1_Silent_p.P483P	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	621					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACATCCTCCCCTACAGCCACC	0.677													5	14					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1050936	1050936	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1050936C>T	uc002lqw.3	+	19	2800	c.2569C>T	c.(2569-2571)CTC>TTC	p.L857F	ABCA7_uc010dsb.1_Missense_Mutation_p.L719F	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	857	ABC transporter 1.|Helical; (Potential).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTGAGTGGCCTCTTCCCACC	0.552													34	69					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1051955	1051955	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1051955C>T	uc002lqw.3	+	22	3208	c.2977C>T	c.(2977-2979)CTC>TTC	p.L993F	ABCA7_uc010dsb.1_Missense_Mutation_p.L855F	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	993	ABC transporter 1.				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACGCTGATCCTCTCCACCCA	0.488													11	78					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1058699	1058699	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1058699C>T	uc002lqw.3	+	38	5463	c.5232C>T	c.(5230-5232)TTC>TTT	p.F1744F	ABCA7_uc002lqy.2_Silent_p.F197F|ABCA7_uc010dsc.2_RNA	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1744	Helical; (Potential).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCCCCTCTTCCTTCTCTTCA	0.572													42	115					0	0	1	0	0
HMHA1	23526	broad.mit.edu	37	19	1079932	1079932	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1079932G>A	uc002lqz.1	+	13	1749	c.1518G>A	c.(1516-1518)ACG>ACA	p.T506T	HMHA1_uc010xgd.1_Silent_p.T522T|HMHA1_uc010xge.1_Silent_p.T346T|HMHA1_uc002lra.1_Silent_p.T346T|HMHA1_uc002lrb.1_Silent_p.T389T|HMHA1_uc002lrc.1_Silent_p.T141T|HMHA1_uc002lrd.1_5'Flank|HMHA1_uc010dsd.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	506					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCAGGCCACGATCTCCTACT	0.677													59	115					0	0	1	0	0
HMHA1	23526	broad.mit.edu	37	19	1079966	1079966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1079966G>A	uc002lqz.1	+	13	1783	c.1552G>A	c.(1552-1554)GCG>ACG	p.A518T	HMHA1_uc010xgd.1_Missense_Mutation_p.A534T|HMHA1_uc010xge.1_Missense_Mutation_p.A358T|HMHA1_uc002lra.1_Missense_Mutation_p.A358T|HMHA1_uc002lrb.1_Missense_Mutation_p.A401T|HMHA1_uc002lrc.1_Missense_Mutation_p.A153T|HMHA1_uc002lrd.1_5'Flank|HMHA1_uc010dsd.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	518					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TATGCAGACGGCGCCGCTGCC	0.672													52	105					0	0	1	0	0
POLR2E	5434	broad.mit.edu	37	19	1090119	1090119	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1090119G>A	uc002lre.3	-	5	532	c.455C>T	c.(454-456)ACC>ATC	p.T152I	POLR2E_uc010xgf.1_RNA	NM_002695	NP_002686	P19388	RPAB1_HUMAN	DNA directed RNA polymerase II polypeptide E	152					interspecies interaction between organisms|mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCCTCCTTGGTCATGACGAC	0.662													11	35					0	0	1	0	0
SBNO2	22904	broad.mit.edu	37	19	1119586	1119586	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1119586G>A	uc002lrk.3	-	13	1540	c.1302C>T	c.(1300-1302)AGC>AGT	p.S434S	SBNO2_uc002lrj.3_Silent_p.S377S|SBNO2_uc010dse.2_Silent_p.S427S|SBNO2_uc010xgj.1_Silent_p.S377S|SBNO2_uc010dsf.2_Silent_p.S377S	NM_014963	NP_055778	Q9Y2G9	SBNO2_HUMAN	strawberry notch homolog 2 isoform 1	434					macrophage activation involved in immune response|negative regulation of transcription, DNA-dependent|regulation of inflammatory response|transcription, DNA-dependent						0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TACCCAAGCGGCTCATGTAGA	0.647													6	14					0	0	1	0	0
APC2	10297	broad.mit.edu	37	19	1457134	1457134	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1457134G>A	uc002lsr.1	+	9	1307	c.1099G>A	c.(1099-1101)GAG>AAG	p.E367K	APC2_uc002lss.1_5'UTR|APC2_uc002lst.1_Missense_Mutation_p.E367K|APC2_uc002lsu.1_Missense_Mutation_p.E366K	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	367					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCGCGCAAGGAGATGCGCGT	0.632													4	4					0	0	1	0	0
ADAMTSL5	339366	broad.mit.edu	37	19	1506656	1506656	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1506656G>A	uc002ltd.2	-	11	1491	c.1047C>T	c.(1045-1047)CCC>CCT	p.P349P	ADAMTSL5_uc010dsl.2_Silent_p.P118P|ADAMTSL5_uc010xgq.1_Silent_p.P359P	NM_213604	NP_998769	Q6ZMM2	ATL5_HUMAN	ADAMTS-like 5 precursor	349						proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGGTGGGCAGGGGTCTGTGG	0.682													5	5					0	0	1	0	0
ADAMTSL5	339366	broad.mit.edu	37	19	1510897	1510897	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1510897G>A	uc002ltd.2	-	2	490	c.46C>T	c.(46-48)CTC>TTC	p.L16F	ADAMTSL5_uc010dsl.2_5'UTR|ADAMTSL5_uc010xgq.1_Missense_Mutation_p.L26F	NM_213604	NP_998769	Q6ZMM2	ATL5_HUMAN	ADAMTS-like 5 precursor	16						proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGAGCAGGAGGTTCTGGAAG	0.413													5	13					0	0	1	0	0
MBD3	53615	broad.mit.edu	37	19	1581114	1581114	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1581114G>A	uc002ltl.1	-	5	676	c.654C>T	c.(652-654)TTC>TTT	p.F218F	MBD3_uc002ltj.2_Silent_p.F218F|MBD3_uc002ltk.2_Silent_p.F186F	NM_003926	NP_003917	O95983	MBD3_HUMAN	methyl-CpG binding domain protein 3	218	Potential.				transcription, DNA-dependent	NuRD complex	DNA binding|protein binding			ovary(1)|pancreas(1)|skin(1)	3		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.179)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGTCACCATGAAGGCTTTGC	0.647													11	42					0	0	1	0	0
ATP8B3	148229	broad.mit.edu	37	19	1811607	1811607	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1811607G>A	uc002ltw.2	-	2	363	c.129C>T	c.(127-129)ATC>ATT	p.I43I	ATP8B3_uc002ltv.2_5'UTR|ATP8B3_uc002ltx.2_RNA|ATP8B3_uc002ltz.1_5'UTR	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	43	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACCTCCGCGGATGCCAGCAG	0.667													9	23					0	0	1	0	0
ADAT3	113179	broad.mit.edu	37	19	1912832	1912832	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:1912832C>T	uc002luh.2	+	2	966	c.738C>T	c.(736-738)TTC>TTT	p.F246F	SCAMP4_uc002lui.1_Intron|SCAMP4_uc002luj.2_Intron|SCAMP4_uc002luk.2_Intron|SCAMP4_uc010dss.2_Intron	NM_138422	NP_612431	Q96EY9	ADAT3_HUMAN	tRNA-specific adenosine deaminase 3	246					tRNA processing		hydrolase activity|zinc ion binding			breast(1)|skin(1)	2		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCAGACCCTTCCCCGCCTGCT	0.726													5	15					0	0	1	0	0
MKNK2	2872	broad.mit.edu	37	19	2041159	2041160	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2041159_2041160GG>AA	uc002lus.2	-	12	1234_1235	c.989_990CC>TT	c.(988-990)CCC>CTT	p.P330L	MKNK2_uc002luq.1_Missense_Mutation_p.P74L|MKNK2_uc010xgu.1_Missense_Mutation_p.P169L|MKNK2_uc010xgv.1_Missense_Mutation_p.P199L|MKNK2_uc002lur.2_Missense_Mutation_p.P330L|MKNK2_uc002lut.1_Missense_Mutation_p.P74L	NM_199054	NP_951009	Q9HBH9	MKNK2_HUMAN	MAP kinase-interacting serine/threonine kinase 2	330	Protein kinase.				cell surface receptor linked signaling pathway|intracellular protein kinase cascade|regulation of translation		ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(1)|breast(1)	2		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTCCTTGTCGGGGAACTCGTA	0.594													38	86					0	0	1	0	0
DOT1L	84444	broad.mit.edu	37	19	2211187	2211188	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2211187_2211188CC>TT	uc002lvb.3	+	15	1477_1478	c.1441_1442CC>TT	c.(1441-1443)CCG>TTG	p.P481L	DOT1L_uc002lvc.1_5'UTR	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	481						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCGCCCACCCCGCCCGCGCTG	0.673													29	68					0	0	1	0	0
DOT1L	84444	broad.mit.edu	37	19	2217047	2217047	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2217047C>T	uc002lvb.3	+	21	2538	c.2502C>T	c.(2500-2502)TCC>TCT	p.S834S	DOT1L_uc002lvc.1_Silent_p.S128S|uc002lvd.1_5'Flank|DOT1L_uc002lve.1_Silent_p.S128S	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	834						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCCCCTGTCCCCTGGGGCCT	0.677													16	42					0	0	1	0	0
DOT1L	84444	broad.mit.edu	37	19	2217878	2217878	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2217878C>T	uc002lvb.3	+	22	2688	c.2652C>T	c.(2650-2652)CCC>CCT	p.P884P	DOT1L_uc002lvc.1_Silent_p.P178P|uc002lvd.1_5'Flank|DOT1L_uc002lve.1_Silent_p.P178P	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	884						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCAGCATTCCCCTGGCCAGCG	0.687													6	27					0	0	1	0	0
JSRP1	126306	broad.mit.edu	37	19	2252699	2252699	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2252699C>T	uc002lvi.1	-	6	660	c.625G>A	c.(625-627)GAG>AAG	p.E209K	JSRP1_uc002lvj.1_Missense_Mutation_p.E209K	NM_144616	NP_653217	Q96MG2	JSPR1_HUMAN	junctional sarcoplasmic reticulum protein 1	209						sarcoplasmic reticulum membrane				pancreas(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCGTCGTTCTCTGCAGCCTCC	0.706													28	113					0	0	1	0	0
SPPL2B	56928	broad.mit.edu	37	19	2352957	2352957	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2352957C>T	uc002lvs.2	+	16	1609	c.1529C>T	c.(1528-1530)CCA>CTA	p.P510L	SPPL2B_uc002lvr.2_3'UTR	NM_152988	NP_694533	Q8TCT7	PSL1_HUMAN	signal peptide peptidase-like 2B isoform 2	510	Pro-rich.					Golgi membrane|integral to membrane	aspartic-type endopeptidase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTCCTACCTCCATCTCCGTGG	0.682													12	26					0	0	1	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2401996	2401996	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2401996G>A	uc010xgx.1	+	4	436	c.436G>A	c.(436-438)GAA>AAA	p.E146K	TMPRSS9_uc002lvv.1_Missense_Mutation_p.E180K	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	146	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCCTTGGCAGAAAGAGACTT	0.393													61	211					0	0	1	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2421882	2421882	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2421882G>A	uc010xgx.1	+	13	2083	c.2083G>A	c.(2083-2085)GAG>AAG	p.E695K		NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	695	Extracellular (Potential).|Peptidase S1 2.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCCTGCGAGGAGGCCCCTGG	0.612													44	67					0	0	1	0	0
GNG7	2788	broad.mit.edu	37	19	2515055	2515055	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2515055G>A	uc002lwd.2	-	5	409	c.172C>T	c.(172-174)CCC>TCC	p.P58S	GNG7_uc010dte.1_Intron	NM_052847	NP_443079	O60262	GBG7_HUMAN	guanine nucleotide binding protein (G protein),	58					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	heterotrimeric G-protein complex	signal transducer activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTTAAAGGGGTTCTCCGAG	0.378													34	96					0	0	1	0	0
SLC39A3	29985	broad.mit.edu	37	19	2733206	2733206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2733206G>A	uc002lwg.2	-	3	742	c.488C>T	c.(487-489)TCG>TTG	p.S163L	SLC39A3_uc010xgy.1_Missense_Mutation_p.S163L	NM_144564	NP_653165	Q9BRY0	S39A3_HUMAN	solute carrier family 39 (zinc transporter),	163	Cytoplasmic (Potential).					integral to membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTGGCGCGCGAGAGGCCCTG	0.731													15	35					0	0	1	0	0
THOP1	7064	broad.mit.edu	37	19	2790449	2790449	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2790449C>T	uc002lwj.2	+	2	202	c.47C>T	c.(46-48)TCT>TTT	p.S16F		NM_003249	NP_003240	P52888	THOP1_HUMAN	thimet oligopeptidase 1	16					proteolysis	cytoplasm	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GACGCAGCATCTCCGTGCTCT	0.602													39	80					0	0	1	0	0
ZNF555	148254	broad.mit.edu	37	19	2852691	2852691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2852691C>T	uc002lwo.2	+	4	717	c.628C>T	c.(628-630)CCT>TCT	p.P210S	ZNF555_uc002lwn.3_Missense_Mutation_p.P209S	NM_152791	NP_690004	Q8NEP9	ZN555_HUMAN	zinc finger protein 555	210	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAAAACCTTTCCTCGTACTTC	0.448													40	75					0	0	1	0	0
ZNF555	148254	broad.mit.edu	37	19	2853194	2853194	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2853194C>T	uc002lwo.2	+	4	1220	c.1131C>T	c.(1129-1131)TTC>TTT	p.F377F	ZNF555_uc002lwn.3_Silent_p.F376F	NM_152791	NP_690004	Q8NEP9	ZN555_HUMAN	zinc finger protein 555	377	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAAGACCTTCATTTATCCCC	0.463													11	42					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2876142	2876142	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2876142C>T	uc002lwp.1	+	3	269	c.182C>T	c.(181-183)TCT>TTT	p.S61F	ZNF556_uc002lwq.2_Missense_Mutation_p.S61F	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	61	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGGATACTTCTGGAGAAAAA	0.368													53	191					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2877393	2877393	+	Missense_Mutation	SNP	G	A	A	rs35499960	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2877393G>A	uc002lwp.1	+	4	524	c.437G>A	c.(436-438)CGG>CAG	p.R146Q	ZNF556_uc002lwq.2_Missense_Mutation_p.R145Q	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTGTAAGACGGTACGAATGC	0.393													37	110					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2877742	2877742	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2877742G>A	uc002lwp.1	+	4	873	c.786G>A	c.(784-786)AAG>AAA	p.K262K	ZNF556_uc002lwq.2_Silent_p.K261K	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	262	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGAGTGCAAGCACTGTGGGA	0.537													17	42					0	0	1	0	0
ZNF77	58492	broad.mit.edu	37	19	2936611	2936611	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2936611G>A	uc002lws.3	-	3	353	c.222C>T	c.(220-222)TTC>TTT	p.F74F		NM_021217	NP_067040	Q15935	ZNF77_HUMAN	zinc finger protein 77	74	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|GBM - Glioblastoma multiforme(1328;2.11e-07)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.174)|STAD - Stomach adenocarcinoma(1328;0.18)		CACTTCCTGTGAACTTTACAA	0.413													33	61					0	0	1	0	0
TLE6	79816	broad.mit.edu	37	19	2989206	2989206	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:2989206C>T	uc002lwu.2	+	11	919	c.519C>T	c.(517-519)AGC>AGT	p.S173S	TLE6_uc002lwt.2_Silent_p.S296S|TLE6_uc010dtg.2_Silent_p.S296S|TLE6_uc002lwv.2_Silent_p.S77S	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	173	WD 1.				regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCATCAGCAGCTTCACGCGGC	0.617													13	34					0	0	1	0	0
TLE2	7089	broad.mit.edu	37	19	3005791	3005791	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3005791G>A	uc002lww.2	-	16	1939	c.1676C>T	c.(1675-1677)GCC>GTC	p.A559V	TLE2_uc010xhb.1_Missense_Mutation_p.A226V|TLE2_uc010dth.2_Missense_Mutation_p.A560V|TLE2_uc010xhc.1_Missense_Mutation_p.A437V|TLE2_uc010dti.2_Missense_Mutation_p.A573V	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	559	WD 3.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAAACCTTGGCGTCGGGGCT	0.637													7	59					0	0	1	0	0
TLE2	7089	broad.mit.edu	37	19	3006496	3006496	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3006496C>T	uc002lww.2	-	15	1685	c.1422G>A	c.(1420-1422)ACG>ACA	p.T474T	TLE2_uc010xhb.1_Silent_p.T141T|TLE2_uc010dth.2_Silent_p.T475T|TLE2_uc010xhc.1_Silent_p.T352T|TLE2_uc010dti.2_Silent_p.T488T|TLE2_uc010xhd.1_Silent_p.T382T	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	474	WD 1.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTTGCCGCCCGTGTACACAT	0.716													5	17					0	0	1	0	0
AES	166	broad.mit.edu	37	19	3055716	3055716	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3055716G>A	uc002lwy.1	-	5	416	c.243C>T	c.(241-243)ATC>ATT	p.I81I	AES_uc002lwx.1_3'UTR|AES_uc002lwz.1_Silent_p.I81I|AES_uc002lxa.1_Silent_p.I25I|AES_uc002lxb.1_Silent_p.I148I|AES_uc002lxc.2_Silent_p.I148I	NM_001130	NP_001121	Q08117	AES_HUMAN	amino-terminal enhancer of split isoform b	81	Gln-rich (Q domain).				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of response to cytokine stimulus|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|response to interleukin-1|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTTTTGACGATCTCAGCCT	0.662													31	88					0	0	1	0	0
GNA11	2767	broad.mit.edu	37	19	3119345	3119345	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3119345C>T	uc002lxd.2	+	6	1119	c.877C>T	c.(877-879)CCC>TCC	p.P293S	uc010xhe.1_5'Flank	NM_002067	NP_002058	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein),	293					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			eye(70)|skin(16)	86		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)		GGACTACTTCCCCGAGTTCGA	0.632			Mis		uveal melanoma								32	72					0	0	1	0	0
GNA15	2769	broad.mit.edu	37	19	3151807	3151807	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3151807C>T	uc002lxf.2	+	4	846	c.588C>T	c.(586-588)TGC>TGT	p.C196C		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	196					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		ACGAGTACTGCTTCTCCGTGC	0.433													9	110					0	0	1	0	0
GNA15	2769	broad.mit.edu	37	19	3155824	3155824	+	Silent	SNP	C	T	T	rs140382547		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3155824C>T	uc002lxf.2	+	5	876	c.618C>T	c.(616-618)ATC>ATT	p.I206I		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	206					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		CCTGTAGGATCGTGGACGTCG	0.557													19	46					0	0	1	0	0
GNA15	2769	broad.mit.edu	37	19	3157830	3157830	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3157830G>A	uc002lxf.2	+	6	1107	c.849G>A	c.(847-849)GAG>GAA	p.E283E		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	283					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		ACATCCTGGAGGAGAAAATCC	0.488													72	163					0	0	1	0	0
CELF5	60680	broad.mit.edu	37	19	3284932	3284932	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3284932C>T	uc002lxm.2	+	9	1109	c.1072C>T	c.(1072-1074)CCT>TCT	p.P358S	CELF5_uc002lxl.1_Missense_Mutation_p.P358S|CELF5_uc010dtj.1_Missense_Mutation_p.P333S|CELF5_uc010xhg.1_Missense_Mutation_p.P244S|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	358					mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						GACACTGCATCCTGCCTTCTC	0.443													3	21					0	0	1	0	0
NFIC	4782	broad.mit.edu	37	19	3449086	3449086	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3449086C>T	uc010xhi.1	+	7	1095	c.1033C>T	c.(1033-1035)CGC>TGC	p.R345C	NFIC_uc002lxo.2_Missense_Mutation_p.R336C|NFIC_uc010xhh.1_Missense_Mutation_p.R336C|NFIC_uc002lxp.2_Missense_Mutation_p.R345C|NFIC_uc010xhj.1_Missense_Mutation_p.R345C	NM_205843	NP_995315	P08651	NFIC_HUMAN	nuclear factor I/C isoform 2	345					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		GGACTCTCCCCGCCTCTCCAG	0.672													21	26					0	0	1	0	0
C19orf28	126321	broad.mit.edu	37	19	3547939	3547939	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3547939C>T	uc002lxz.2	-	4	914	c.744G>A	c.(742-744)GAG>GAA	p.E248E	C19orf28_uc002lxw.2_Silent_p.E248E|C19orf28_uc002lxx.2_Silent_p.E248E|C19orf28_uc002lxy.2_Silent_p.E239E	NM_174983	NP_778148	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform c	248					transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCCTGGCTCCTCCGCATGCG	0.697													7	17					0	0	1	0	0
C19orf28	126321	broad.mit.edu	37	19	3547941	3547941	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3547941C>T	uc002lxz.2	-	4	912	c.742G>A	c.(742-744)GAG>AAG	p.E248K	C19orf28_uc002lxw.2_Missense_Mutation_p.E248K|C19orf28_uc002lxx.2_Missense_Mutation_p.E248K|C19orf28_uc002lxy.2_Missense_Mutation_p.E239K	NM_174983	NP_778148	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform c	248					transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTGGCTCCTCCGCATGCGGC	0.701													7	17					0	0	1	0	0
C19orf28	126321	broad.mit.edu	37	19	3557246	3557246	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3557246G>A	uc002lxz.2	-	1	326	c.156C>T	c.(154-156)GCC>GCT	p.A52A	C19orf28_uc002lxw.2_Silent_p.A52A|C19orf28_uc002lxx.2_Silent_p.A52A|C19orf28_uc002lxy.2_Silent_p.A52A	NM_174983	NP_778148	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform c	52					transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGAGCTGTAGGCGCGCACCG	0.711													8	14					0	0	1	0	0
HMG20B	10362	broad.mit.edu	37	19	3578095	3578095	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3578095C>T	uc002lya.2	+	9	993	c.925C>T	c.(925-927)CTG>TTG	p.L309L	HMG20B_uc002lyb.2_Silent_p.L207L	NM_006339	NP_006330	Q9P0W2	HM20B_HUMAN	high-mobility group 20B	309					blood coagulation|cell cycle|chromatin modification	chromosome|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		CAAGGAAATCCTGGCCCAGGT	0.706													6	23					0	0	1	0	0
TBXA2R	6915	broad.mit.edu	37	19	3600303	3600303	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3600303G>A	uc002lyg.1	-	2	544	c.330C>T	c.(328-330)GTC>GTT	p.V110V	TBXA2R_uc002lye.1_Silent_p.V110V	NM_001060	NP_001051	P21731	TA2R_HUMAN	thromboxane A2 receptor isoform alpha	110	Helical; Name=3; (Potential).				platelet activation	integral to plasma membrane	guanyl-nucleotide exchange factor activity|protein binding|thromboxane A2 receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)	Ridogrel(DB01207)	AGATCATGACGACGCCCATGA	0.692													19	37					0	0	1	0	0
C19orf29	58509	broad.mit.edu	37	19	3623996	3623996	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3623996G>A	uc002lyh.2	-	2	385	c.332C>T	c.(331-333)CCT>CTT	p.P111L	C19orf29_uc010dtn.2_5'Flank|C19orf29_uc002lyi.3_Missense_Mutation_p.P111L|C19orf29_uc010dto.2_RNA	NM_001080543	NP_001074012	Q8WUQ7	CS029_HUMAN	chromosome 19 open reading frame 29	111						catalytic step 2 spliceosome	protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		TGAGGAGCTAGGAGACCACGA	0.701													6	15					0	0	1	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3643301	3643301	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3643301G>A	uc002lyj.1	-	13	1646	c.1589C>T	c.(1588-1590)TCC>TTC	p.S530F	PIP5K1C_uc010xhq.1_Missense_Mutation_p.S530F|PIP5K1C_uc010xhr.1_Missense_Mutation_p.S530F	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	530					axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		GAGGGATGTGGATGACAGAGT	0.662													42	101					0	0	1	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3656551	3656551	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3656551G>A	uc002lyj.1	-	6	530	c.473C>T	c.(472-474)TCC>TTC	p.S158F	PIP5K1C_uc010xhq.1_Missense_Mutation_p.S158F|PIP5K1C_uc010xhr.1_Missense_Mutation_p.S158F	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	158	PIPK.				axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		ATTGCACAGGGAGTACTGGAA	0.622													23	63					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3730080	3730080	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3730080C>T	uc010xhv.1	+	3	270	c.270C>T	c.(268-270)TCC>TCT	p.S90S	TJP3_uc010xhs.1_Silent_p.S71S|TJP3_uc010xht.1_Silent_p.S35S|TJP3_uc010xhu.1_Silent_p.S80S|TJP3_uc010xhw.1_Silent_p.S90S	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	71	PDZ 1.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGCCACCTCCGCGTTTGCCA	0.597													34	100					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3730588	3730588	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3730588G>A	uc010xhv.1	+	4	554	c.554G>A	c.(553-555)GGT>GAT	p.G185D	TJP3_uc010xhs.1_Missense_Mutation_p.G166D|TJP3_uc010xht.1_Missense_Mutation_p.G130D|TJP3_uc010xhu.1_Missense_Mutation_p.G175D|TJP3_uc010xhw.1_Missense_Mutation_p.G185D	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	166						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGAGCCCAGGTGGTGGCTCT	0.706													16	59					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3731987	3731987	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3731987G>A	uc010xhv.1	+	5	725	c.725G>A	c.(724-726)GGC>GAC	p.G242D	TJP3_uc010xhs.1_Missense_Mutation_p.G223D|TJP3_uc010xht.1_Missense_Mutation_p.G187D|TJP3_uc010xhu.1_Missense_Mutation_p.G232D|TJP3_uc010xhw.1_Missense_Mutation_p.G242D	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	223	PDZ 2.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		ACAGATTCGGGCCTGGCTGCC	0.597													16	57					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3740659	3740659	+	Missense_Mutation	SNP	C	T	T	rs144286949		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3740659C>T	uc010xhv.1	+	13	1840	c.1840C>T	c.(1840-1842)CGT>TGT	p.R614C	TJP3_uc010xhs.1_Missense_Mutation_p.R581C|TJP3_uc010xht.1_Missense_Mutation_p.R545C|TJP3_uc010xhu.1_Missense_Mutation_p.R590C|TJP3_uc010xhw.1_Missense_Mutation_p.R600C	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	595	Guanylate kinase-like.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGGGGTCTTCGTCGAGGAGC	0.692													12	18					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3740730	3740730	+	Silent	SNP	C	T	T	rs139746746	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3740730C>T	uc010xhv.1	+	13	1911	c.1911C>T	c.(1909-1911)TAC>TAT	p.Y637Y	TJP3_uc010xhs.1_Silent_p.Y604Y|TJP3_uc010xht.1_Silent_p.Y568Y|TJP3_uc010xhu.1_Silent_p.Y613Y|TJP3_uc010xhw.1_Silent_p.Y623Y	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	618	Guanylate kinase-like.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGGCCGCTACCCGCCCTACG	0.667													12	32					0	0	1	0	0
MATK	4145	broad.mit.edu	37	19	3779070	3779070	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3779070G>A	uc002lyt.2	-	12	1517	c.1117C>T	c.(1117-1119)CTG>TTG	p.L373L	MATK_uc002lyv.2_Silent_p.L374L|MATK_uc002lyu.2_Silent_p.L332L|MATK_uc010dtq.2_Silent_p.L373L	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	373	Protein kinase.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTTTGGCCAGGCCAAAGTCG	0.637													10	30					0	0	1	0	0
MATK	4145	broad.mit.edu	37	19	3783164	3783164	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3783164C>T	uc002lyt.2	-	7	1036	c.636G>A	c.(634-636)CGG>CGA	p.R212R	MATK_uc002lyv.2_Silent_p.R213R|MATK_uc002lyu.2_Silent_p.R171R|MATK_uc010dtq.2_Silent_p.R212R	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	212					cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCCGTGTTTCCGCTTTGGTC	0.652													19	80					0	0	1	0	0
MATK	4145	broad.mit.edu	37	19	3784165	3784165	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3784165C>T	uc002lyt.2	-	5	719	c.319G>A	c.(319-321)GAG>AAG	p.E107K	MATK_uc002lyv.2_Missense_Mutation_p.E108K|MATK_uc002lyu.2_Missense_Mutation_p.E66K|MATK_uc010dtq.2_Missense_Mutation_p.E107K	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	107	SH3.			ER -> DG (in Ref. 1; AAA16703).	cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTCCCGCTCCCGCAGCGCC	0.677													17	56					0	0	1	0	0
MATK	4145	broad.mit.edu	37	19	3784232	3784232	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3784232C>T	uc002lyt.2	-	5	652	c.252G>A	c.(250-252)AAG>AAA	p.K84K	MATK_uc002lyv.2_Silent_p.K85K|MATK_uc002lyu.2_Silent_p.K43K|MATK_uc010dtq.2_Silent_p.K84K	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	84	SH3.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTACCAGCTCTTGTTCTGCC	0.697													15	49					0	0	1	0	0
ZFR2	23217	broad.mit.edu	37	19	3823288	3823288	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3823288C>T	uc002lyw.2	-	8	1339	c.1327G>A	c.(1327-1329)GGC>AGC	p.G443S	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	443						intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		TCAGAGCAGCCCGCGGGAGCT	0.627													45	128					0	0	1	0	0
ZFR2	23217	broad.mit.edu	37	19	3827613	3827613	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3827613C>T	uc002lyw.2	-	6	903	c.891G>A	c.(889-891)AAG>AAA	p.K297K	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	297						intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		CCGCCTCCTTCTTTCTGTGCT	0.692													3	5					0	0	1	0	0
ZFR2	23217	broad.mit.edu	37	19	3834887	3834887	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3834887G>A	uc002lyw.2	-	2	160	c.148C>T	c.(148-150)CCC>TCC	p.P50S	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	50						intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		GCAGCTGGGGGAAAGGCCGGG	0.697													8	14					0	0	1	0	0
ZFR2	23217	broad.mit.edu	37	19	3834911	3834911	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3834911C>T	uc002lyw.2	-	2	136	c.124G>A	c.(124-126)GAC>AAC	p.D42N	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	42						intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		ACGGCAGGGTCCATCCCAGGA	0.667													6	9					0	0	1	0	0
ATCAY	85300	broad.mit.edu	37	19	3905604	3905604	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3905604G>A	uc002lyy.3	+	4	739	c.309G>A	c.(307-309)GAG>GAA	p.E103E	ATCAY_uc010xhz.1_Silent_p.E109E	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	103					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		CCCCCGATGAGACCGACTCGC	0.582													28	70					0	0	1	0	0
ATCAY	85300	broad.mit.edu	37	19	3905638	3905638	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3905638G>A	uc002lyy.3	+	4	773	c.343G>A	c.(343-345)GAA>AAA	p.E115K	ATCAY_uc010xhz.1_Missense_Mutation_p.E121K	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	115					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		GAATGGCAACGAACTGGAGTG	0.577													25	62					0	0	1	0	0
ATCAY	85300	broad.mit.edu	37	19	3907853	3907853	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:3907853G>A	uc002lyy.3	+	5	910	c.480G>A	c.(478-480)GGG>GGA	p.G160G	ATCAY_uc010xhz.1_Silent_p.G166G|ATCAY_uc010dts.2_5'Flank	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	160					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		TGATCATCGGGGAGCAAGAGC	0.657													23	41					0	0	1	0	0
CREB3L3	84699	broad.mit.edu	37	19	4168353	4168353	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4168353G>A	uc002lzl.2	+	6	836	c.720G>A	c.(718-720)GAG>GAA	p.E240E	CREB3L3_uc002lzm.2_Silent_p.E230E|CREB3L3_uc010xib.1_Silent_p.E229E|CREB3L3_uc010xic.1_Intron	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	240	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCAGTACGAGGAGCGAGTGC	0.413													8	48					0	0	1	0	0
ANKRD24	170961	broad.mit.edu	37	19	4217164	4217164	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4217164C>T	uc010dtt.1	+	18	2283	c.2007C>T	c.(2005-2007)ACC>ACT	p.T669T	ANKRD24_uc002lzs.2_Silent_p.T640T|ANKRD24_uc002lzt.2_Silent_p.T641T	NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	669											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		TCACAGGGACCACAAACATGG	0.617													5	12					0	0	1	0	0
ANKRD24	170961	broad.mit.edu	37	19	4222756	4222756	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4222756C>T	uc010dtt.1	+	20	3537	c.3261C>T	c.(3259-3261)CTC>CTT	p.L1087L		NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	1087	Potential.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		TGGAGGCTCTCCGTGACCAGG	0.572													8	18					0	0	1	0	0
EBI3	10148	broad.mit.edu	37	19	4231288	4231288	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4231288C>T	uc002lzu.2	+	2	176	c.168C>T	c.(166-168)TCC>TCT	p.S56S		NM_005755	NP_005746	Q14213	IL27B_HUMAN	Epstein-Barr virus induced 3 precursor	56	Fibronectin type-III 1.				humoral immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of interferon-gamma biosynthetic process|T-helper 1 type immune response	extracellular space|plasma membrane	cytokine activity|cytokine receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0336)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCCAAACTCCACCAGCCCCG	0.657													4	27					0	0	1	0	0
EBI3	10148	broad.mit.edu	37	19	4231306	4231306	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4231306C>T	uc002lzu.2	+	2	194	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_005755	NP_005746	Q14213	IL27B_HUMAN	Epstein-Barr virus induced 3 precursor	62	Fibronectin type-III 1.				humoral immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of interferon-gamma biosynthetic process|T-helper 1 type immune response	extracellular space|plasma membrane	cytokine activity|cytokine receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0336)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGTGTCCTTCATTGCCACGT	0.652													12	20					0	0	1	0	0
EBI3	10148	broad.mit.edu	37	19	4234802	4234802	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4234802G>A	uc002lzu.2	+	4	526	c.518G>A	c.(517-519)GGA>GAA	p.G173E		NM_005755	NP_005746	Q14213	IL27B_HUMAN	Epstein-Barr virus induced 3 precursor	173	Fibronectin type-III 2.				humoral immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of interferon-gamma biosynthetic process|T-helper 1 type immune response	extracellular space|plasma membrane	cytokine activity|cytokine receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0336)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGCGTCAGGGAGCTGCGCGC	0.612													52	134					0	0	1	0	0
CCDC94	55702	broad.mit.edu	37	19	4268649	4268649	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4268649C>T	uc002lzv.3	+	8	961	c.928C>T	c.(928-930)CTG>TTG	p.L310L		NM_018074	NP_060544	Q9BW85	CCD94_HUMAN	coiled-coil domain containing 94	310											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0348)|STAD - Stomach adenocarcinoma(1328;0.183)		CCTGAGCCAACTGGGTGCATA	0.622													7	28					0	0	1	0	0
SHD	56961	broad.mit.edu	37	19	4283066	4283066	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4283066G>A	uc002lzw.2	+	3	1882	c.419G>A	c.(418-420)GGG>GAG	p.G140E	SHD_uc010dtu.2_Missense_Mutation_p.G140E	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	140											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCGGCAGAGGGGTGCAGCTC	0.612													6	57					0	0	1	0	0
SHD	56961	broad.mit.edu	37	19	4284825	4284825	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4284825G>A	uc002lzw.2	+	4	2103	c.640G>A	c.(640-642)GAG>AAG	p.E214K	SHD_uc010dtu.2_Missense_Mutation_p.E214K	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	214											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCAGCCAAGGAGCTCCGGAG	0.617													14	49					0	0	1	0	0
TMIGD2	126259	broad.mit.edu	37	19	4292792	4292793	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4292792_4292793CC>TT	uc002lzx.1	-	5	698_699	c.652_653GG>AA	c.(652-654)GGC>AAC	p.G218N	TMIGD2_uc010dtv.1_Missense_Mutation_p.G214N	NM_144615	NP_653216	Q96BF3	TMIG2_HUMAN	transmembrane and immunoglobulin domain	218	Cytoplasmic (Potential).					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		AATGCTCTGGCCCCTCTGGTCC	0.5													23	88					0	0	1	0	0
TMIGD2	126259	broad.mit.edu	37	19	4292806	4292806	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4292806C>T	uc002lzx.1	-	5	685	c.639G>A	c.(637-639)GGG>GGA	p.G213G	TMIGD2_uc010dtv.1_Silent_p.G209G	NM_144615	NP_653216	Q96BF3	TMIG2_HUMAN	transmembrane and immunoglobulin domain	213	Cytoplasmic (Potential).					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTGGTCCTTCCCCTCTCCAG	0.537													8	105					0	0	1	0	0
FSD1	79187	broad.mit.edu	37	19	4306242	4306242	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4306242C>T	uc002lzy.2	+	3	312	c.159C>T	c.(157-159)TCC>TCT	p.S53S	FSD1_uc010xie.1_Silent_p.S40S|FSD1_uc010xif.1_Missense_Mutation_p.P37S|FSD1_uc002lzz.2_Silent_p.S53S	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	53	Potential.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTTCCAGTCCCTCTTCTCCC	0.587													11	152					0	0	1	0	0
FSD1	79187	broad.mit.edu	37	19	4323544	4323544	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4323544C>T	uc002lzy.2	+	13	1548	c.1395C>T	c.(1393-1395)AGC>AGT	p.S465S	FSD1_uc002lzz.2_Missense_Mutation_p.A435V|FSD1_uc002maa.2_Silent_p.S278S	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	465	B30.2/SPRY.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTGTGGCAGCTTCCAGGTGA	0.682													12	20					0	0	1	0	0
STAP2	55620	broad.mit.edu	37	19	4327185	4327185	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4327185G>A	uc002mab.2	-	8	796	c.699C>T	c.(697-699)TTC>TTT	p.F233F	STAP2_uc002mac.2_Silent_p.F233F|STAP2_uc002mad.2_Silent_p.F126F	NM_001013841	NP_001013863	Q9UGK3	STAP2_HUMAN	signal transducing adaptor family member 2	233	SH2.					cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		TATGCGACACGAAATAGTTGA	0.617													8	56					0	0	1	0	0
STAP2	55620	broad.mit.edu	37	19	4333791	4333791	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4333791C>T	uc002mab.2	-	3	294	c.197G>A	c.(196-198)GGA>GAA	p.G66E	STAP2_uc002mac.2_Missense_Mutation_p.G66E|STAP2_uc002mad.2_5'UTR	NM_001013841	NP_001013863	Q9UGK3	STAP2_HUMAN	signal transducing adaptor family member 2	66	PH.					cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCAAATGCTCCCAAGTTGAG	0.567													23	51					0	0	1	0	0
SH3GL1	6455	broad.mit.edu	37	19	4365544	4365544	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4365544G>A	uc002maj.2	-	4	372	c.266C>T	c.(265-267)TCG>TTG	p.S89L	SH3GL1_uc002mak.2_Intron|SH3GL1_uc010xig.1_Intron	NM_003025	NP_003016	Q99961	SH3G1_HUMAN	SH3-domain GRB2-like 1	89	BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	lipid binding|protein binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0152)|STAD - Stomach adenocarcinoma(1328;0.182)		AAGCCCCTCCGACTGCGGGTA	0.652			T	MLL	AL								37	99					0	0	1	0	0
CHAF1A	10036	broad.mit.edu	37	19	4409622	4409622	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4409622C>T	uc002mal.2	+	3	926	c.826C>T	c.(826-828)CCC>TCC	p.P276S		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	276	Binds to CBX1 chromo shadow domain.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAATCTTTCCCCGAAGAAGA	0.592								Chromatin_Structure					20	51					0	0	1	0	0
CHAF1A	10036	broad.mit.edu	37	19	4432134	4432135	+	Silent	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4432134_4432135CC>TT	uc002mal.2	+	12	2233_2234	c.2133_2134CC>TT	c.(2131-2136)TTCCTG>TTTTTG	p.711_712FL>FL		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	711_712	Binds to p60.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGCCTGCTTCCTGGAGACCCT	0.658								Chromatin_Structure					14	46					0	0	1	0	0
CHAF1A	10036	broad.mit.edu	37	19	4433534	4433534	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4433534C>T	uc002mal.2	+	13	2771	c.2671C>T	c.(2671-2673)CAG>TAG	p.Q891*		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	891	Binds to p60.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		GCACGACGGCCAGGTGAGGTG	0.473								Chromatin_Structure					14	33					0	0	1	0	0
UBXN6	80700	broad.mit.edu	37	19	4453501	4453501	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4453501G>A	uc002man.1	-	3	362	c.266C>T	c.(265-267)GCC>GTC	p.A89V	UBXN6_uc010dty.1_Missense_Mutation_p.A36V|UBXN6_uc002mam.1_Missense_Mutation_p.A36V	NM_025241	NP_079517	Q9BZV1	UBXN6_HUMAN	UBX domain protein 6	89						microtubule organizing center|nucleus	protein binding				0						GGTGGCTTCGGCTTGAAGTTC	0.632													5	31					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4511239	4511239	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4511239C>T	uc002mar.1	-	3	2691	c.2691G>A	c.(2689-2691)GGG>GGA	p.G897G	PLIN4_uc010dub.1_5'UTR	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	897	27 X 33 AA approximate tandem repeat.|25.					lipid particle|plasma membrane					0						TCTGGACAGTCCCTTTGGCCA	0.602													32	115					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4513602	4513602	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4513602C>T	uc002mar.1	-	3	328	c.328G>A	c.(328-330)GGC>AGC	p.G110S	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	110	1.|27 X 33 AA approximate tandem repeat.					lipid particle|plasma membrane					0						GTGTCCAGGCCTCCCTGGACC	0.657													5	11					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4513637	4513637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4513637C>T	uc002mar.1	-	3	293	c.293G>A	c.(292-294)AGC>AAC	p.S98N	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	98	1.|27 X 33 AA approximate tandem repeat.					lipid particle|plasma membrane					0						GTCCACCACGCTGGCCACCCC	0.637													5	15					0	0	1	0	0
PLIN5	440503	broad.mit.edu	37	19	4525644	4525644	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4525644C>T	uc002mas.2	-	6	773	c.720_splice	c.e6+1	p.L240_splice		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5							lipid particle					0						CGGGCTCTCACCAGCTCCAGC	0.637													12	50					0	0	1	0	0
PLIN5	440503	broad.mit.edu	37	19	4525711	4525711	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4525711C>T	uc002mas.2	-	6	707	c.654G>A	c.(652-654)GGG>GGA	p.G218G		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	218						lipid particle					0						GCCTCAGTTTCCCCACAGAGT	0.662													34	68					0	0	1	0	0
PLIN5	440503	broad.mit.edu	37	19	4534035	4534035	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4534035C>T	uc002mas.2	-	2	105	c.52G>A	c.(52-54)GAC>AAC	p.D18N	PLIN5_uc002mat.1_Missense_Mutation_p.D18N	NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	18						lipid particle					0						ACCTGCTGGTCCTGCTCCCAC	0.612													5	8					0	0	1	0	0
LRG1	116844	broad.mit.edu	37	19	4538598	4538598	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4538598G>A	uc002mau.2	-	2	409	c.398C>T	c.(397-399)CCG>CTG	p.P133L	PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	133	LRR 2.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		GAAGAGGCCCGGGGGCAGCCC	0.632													23	46					0	0	1	0	0
LRG1	116844	broad.mit.edu	37	19	4538663	4538663	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4538663G>A	uc002mau.2	-	2	344	c.333C>T	c.(331-333)TTC>TTT	p.F111F	PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	111	LRR 1.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGGCCGCAGGAATTCGGGCG	0.652													13	43					0	0	1	0	0
SEMA6B	10501	broad.mit.edu	37	19	4544371	4544371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4544371C>T	uc010duc.1	-	16	1947	c.1909G>A	c.(1909-1911)GAG>AAG	p.E637K	SEMA6B_uc010dud.2_Missense_Mutation_p.E637K|SEMA6B_uc010xih.1_Intron	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	637	Cytoplasmic (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGATGGCCTCCTTGTCCTTG	0.567													6	9					0	0	1	0	0
SEMA6B	10501	broad.mit.edu	37	19	4544408	4544408	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4544408G>A	uc010duc.1	-	16	1910	c.1872C>T	c.(1870-1872)CTC>CTT	p.L624L	SEMA6B_uc010dud.2_Silent_p.L624L|SEMA6B_uc010xih.1_Intron	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	624	Helical; (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCGCTCACGGAGGCCCACGA	0.687													9	20					0	0	1	0	0
SEMA6B	10501	broad.mit.edu	37	19	4554475	4554475	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4554475G>A	uc010duc.1	-	8	734	c.696C>T	c.(694-696)GTC>GTT	p.V232V	SEMA6B_uc010dud.2_Silent_p.V232V|SEMA6B_uc010xih.1_Silent_p.V232V	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	232	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		CCACCGCATGGACAAAGTAAG	0.547													11	30					0	0	1	0	0
TICAM1	148022	broad.mit.edu	37	19	4817311	4817311	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4817311G>A	uc002mbi.2	-	2	1330	c.1079C>T	c.(1078-1080)CCT>CTT	p.P360L		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	360	Pro-rich.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		aggaggaggaggGGATGTTTC	0.463													21	71					0	0	1	0	0
TICAM1	148022	broad.mit.edu	37	19	4817564	4817564	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4817564G>A	uc002mbi.2	-	2	1077	c.826C>T	c.(826-828)CCC>TCC	p.P276S		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	276	Pro-rich.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		GCCACTTCGGGAAGCCCAGGA	0.662													16	28					0	0	1	0	0
PLIN3	10226	broad.mit.edu	37	19	4839365	4839365	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4839365G>A	uc002mbj.2	-	8	1321	c.1144C>T	c.(1144-1146)CTG>TTG	p.L382L	PLIN3_uc002mbk.2_Silent_p.L370L|PLIN3_uc002mbl.3_Silent_p.L381L	NM_005817	NP_005808	O60664	PLIN3_HUMAN	mannose 6 phosphate receptor binding protein 1	382					vesicle-mediated transport	endosome membrane|Golgi apparatus|lipid particle	protein binding				0					Galsulfase(DB01279)|Idursulfase(DB01271)	CTGCTGGACAGGTCCTGGAAG	0.647													13	57					0	0	1	0	0
PLIN3	10226	broad.mit.edu	37	19	4847814	4847814	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4847814G>A	uc002mbj.2	-	6	900	c.723C>T	c.(721-723)TCC>TCT	p.S241S	PLIN3_uc002mbk.2_Silent_p.S229S|PLIN3_uc002mbl.3_Silent_p.S241S	NM_005817	NP_005808	O60664	PLIN3_HUMAN	mannose 6 phosphate receptor binding protein 1	241					vesicle-mediated transport	endosome membrane|Golgi apparatus|lipid particle	protein binding				0					Galsulfase(DB01279)|Idursulfase(DB01271)	TCTCCGACAGGGAGCCCAGAC	0.637													10	32					0	0	1	0	0
ARRDC5	645432	broad.mit.edu	37	19	4896717	4896717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:4896717C>T	uc002mbm.2	-	2	467	c.467G>A	c.(466-468)GGA>GAA	p.G156E		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	156					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		GGTGGAAGTTCCTTGAACCAA	0.488													20	38					0	0	1	0	0
PTPRS	5802	broad.mit.edu	37	19	5221023	5221023	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5221023G>A	uc002mbv.2	-	20	3677	c.3443C>T	c.(3442-3444)CCC>CTC	p.P1148L	PTPRS_uc002mbu.1_Missense_Mutation_p.P717L|PTPRS_uc010xin.1_Missense_Mutation_p.P717L|PTPRS_uc002mbw.2_Missense_Mutation_p.P1126L|PTPRS_uc002mbx.2_Missense_Mutation_p.P721L|PTPRS_uc002mby.2_Missense_Mutation_p.P717L	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1148	Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GACAGGCACGGGGCTCTGGCC	0.468													38	99					0	0	1	0	0
PTPRS	5802	broad.mit.edu	37	19	5222750	5222750	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5222750G>A	uc002mbv.2	-	18	3287	c.3053C>T	c.(3052-3054)CCT>CTT	p.P1018L	PTPRS_uc002mbu.1_Intron|PTPRS_uc010xin.1_Intron|PTPRS_uc002mbw.2_Missense_Mutation_p.P996L|PTPRS_uc002mbx.2_Intron|PTPRS_uc002mby.2_Intron	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1018	Fibronectin type-III 7.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GAAGGGGCCAGGGCCCCGGCG	0.706													8	29					0	0	1	0	0
PTPRS	5802	broad.mit.edu	37	19	5238990	5238990	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5238990G>A	uc002mbv.2	-	13	2023	c.1789C>T	c.(1789-1791)CGC>TGC	p.R597C	PTPRS_uc002mbu.1_Missense_Mutation_p.R584C|PTPRS_uc010xin.1_Missense_Mutation_p.R584C|PTPRS_uc002mbw.2_Missense_Mutation_p.R584C|PTPRS_uc002mbx.2_Missense_Mutation_p.R588C|PTPRS_uc002mby.2_Missense_Mutation_p.R584C	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	597	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		TGCGGCGAGCGGGCCGCCAGG	0.711													19	61					0	0	1	0	0
ZNRF4	148066	broad.mit.edu	37	19	5455863	5455864	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5455863_5455864GG>AT	uc002mca.3	+	1	438_439	c.361_362GG>AT	c.(361-363)GGC>ATC	p.G121I		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	121	Extracellular (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		GGCGCTGTTCGGCGTCCCCCTG	0.683													18	112					0	0	1	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456123	5456123	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5456123C>T	uc002mca.3	+	1	698	c.621C>T	c.(619-621)ATC>ATT	p.I207I		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	207	Extracellular (Potential).|PA.					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		GGGGCCAGATCGCCATCCCCT	0.682													40	89					0	0	1	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456292	5456292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5456292C>T	uc002mca.3	+	1	867	c.790C>T	c.(790-792)CTG>TTG	p.L264L		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	264	Helical; (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		TACCCTGGCCCTGGTCGTATC	0.677													27	71					0	0	1	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456549	5456549	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5456549C>T	uc002mca.3	+	1	1124	c.1047C>T	c.(1045-1047)CCC>CCT	p.P349P		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	349	RING-type; atypical.|Cytoplasmic (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		GCTCCTGCCCCGTGTGCAAAC	0.642													13	119					0	0	1	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456633	5456634	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5456633_5456634GG>AA	uc002mca.3	+	1	1208_1209	c.1131_1132GG>AA	c.(1129-1134)CCGGGC>CCAAGC	p.G378S		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	378	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		CCTCCCTACCGGGCCACCGGCC	0.683													30	97					0	0	1	0	0
SAFB2	9667	broad.mit.edu	37	19	5612564	5612564	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5612564G>A	uc002mcd.2	-	6	833	c.621C>T	c.(619-621)TCC>TCT	p.S207S	SAFB2_uc010xio.1_Silent_p.S207S|SAFB2_uc010xip.1_RNA	NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	207					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		GCTCCAAAAGGGATTCTTCAA	0.338													6	65					0	0	1	0	0
TMEM146	257062	broad.mit.edu	37	19	5754219	5754219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5754219C>T	uc002mda.2	+	13	1302	c.1241C>T	c.(1240-1242)TCG>TTG	p.S414L	TMEM146_uc010duj.1_Missense_Mutation_p.S72L	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	414	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTGACTGCTTCGTTGATACCC	0.453													64	138					0	0	1	0	0
TMEM146	257062	broad.mit.edu	37	19	5757925	5757925	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5757925G>A	uc002mda.2	+	14	1411	c.1350G>A	c.(1348-1350)GGG>GGA	p.G450G	TMEM146_uc010duj.1_Silent_p.G108G	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	450	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						CATCAGATGGGAACACCAAGT	0.567													18	37					0	0	1	0	0
TMEM146	257062	broad.mit.edu	37	19	5759096	5759096	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5759096G>A	uc002mda.2	+	15	1430	c.1369_splice	c.e15-1	p.D457_splice	TMEM146_uc010duj.1_Splice_Site_p.D115_splice	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor							integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGACCCCACAGGATATTTTCC	0.557													32	109					0	0	1	0	0
TMEM146	257062	broad.mit.edu	37	19	5770965	5770965	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5770965G>A	uc002mda.2	+	19	1706	c.1645G>A	c.(1645-1647)GAC>AAC	p.D549N	TMEM146_uc010duj.1_Missense_Mutation_p.D207N	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	549	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGAATTCTACGACCCCGGCTT	0.547													30	72					0	0	1	0	0
DUS3L	56931	broad.mit.edu	37	19	5785466	5785466	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5785466G>A	uc002mdc.2	-	12	1905	c.1808C>T	c.(1807-1809)CCC>CTC	p.P603L	PRR22_uc002mdb.1_5'Flank|PRR22_uc010xiv.1_5'Flank|DUS3L_uc002mdd.2_Missense_Mutation_p.P361L|DUS3L_uc010duk.2_Missense_Mutation_p.P268L	NM_020175	NP_064560	Q96G46	DUS3L_HUMAN	dihydrouridine synthase 3-like isoform 1	603					tRNA processing		flavin adenine dinucleotide binding|nucleic acid binding|tRNA dihydrouridine synthase activity|zinc ion binding				0						CAGGTAGTAGGGCGGCCGCTC	0.682													4	5					0	0	1	0	0
FUT5	2527	broad.mit.edu	37	19	5867474	5867474	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5867474G>A	uc002mdo.3	-	2	351	c.263C>T	c.(262-264)CCC>CTC	p.P88L	FUT5_uc010duo.2_Missense_Mutation_p.P88L	NM_002034	NP_002025	Q11128	FUT5_HUMAN	fucosyltransferase 5	88	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						CAGAGCCACGGGTGTGTTAAA	0.662													9	74					0	0	1	0	0
FUT5	2527	broad.mit.edu	37	19	5867495	5867495	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:5867495C>T	uc002mdo.3	-	2	330	c.242G>A	c.(241-243)TGG>TAG	p.W81*	FUT5_uc010duo.2_Nonsense_Mutation_p.W81*	NM_002034	NP_002025	Q11128	FUT5_HUMAN	fucosyltransferase 5	81	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						AGGCCACGTCCACAGCAGGAT	0.652													17	59					0	0	1	0	0
ACSBG2	81616	broad.mit.edu	37	19	6187365	6187365	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6187365C>T	uc002mef.1	+	12	1839	c.1612C>T	c.(1612-1614)CCC>TCC	p.P538S	ACSBG2_uc002mee.1_Missense_Mutation_p.P351S|ACSBG2_uc002meg.1_Missense_Mutation_p.P538S|ACSBG2_uc002meh.1_Missense_Mutation_p.P538S|ACSBG2_uc002mei.1_Missense_Mutation_p.P488S|ACSBG2_uc010xiz.1_Missense_Mutation_p.P538S	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	538					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						GAAGAAGATCCCCATCATCAG	0.468													45	114					0	0	1	0	0
MLLT1	4298	broad.mit.edu	37	19	6222145	6222145	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6222145G>A	uc002mek.2	-	6	1261	c.1097C>T	c.(1096-1098)TCC>TTC	p.S366F		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	366					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						GGACTTGAAGGAGGCCTCGTC	0.572			T	MLL	AL								7	22					0	0	1	0	0
ACER1	125981	broad.mit.edu	37	19	6309787	6309787	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6309787G>A	uc002mel.2	-	4	487	c.409C>T	c.(409-411)CTG>TTG	p.L137L		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	137	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						GTGGGCCGCAGGAAGGACAGA	0.607													13	63					0	0	1	0	0
ACER1	125981	broad.mit.edu	37	19	6309800	6309800	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6309800G>A	uc002mel.2	-	4	474	c.396C>T	c.(394-396)ACC>ACT	p.T132T		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	132	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						AGGACAGAAGGGTGCTGACCA	0.597													13	59					0	0	1	0	0
ACER1	125981	broad.mit.edu	37	19	6309836	6309836	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6309836G>A	uc002mel.2	-	4	438	c.360C>T	c.(358-360)TTC>TTT	p.F120F		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	120	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						CCAGGCGGATGAACTGGGACC	0.617													15	38					0	0	1	0	0
ACER1	125981	broad.mit.edu	37	19	6312194	6312195	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6312194_6312195GG>AA	uc002mel.2	-	3	393_394	c.315_316CC>TT	c.(313-318)CCCCGC>CCTTGC	p.R106C		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	106	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						AAATAGCAGCGGGGCATCCATA	0.584													14	46					0	0	1	0	0
ACER1	125981	broad.mit.edu	37	19	6333529	6333529	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6333529C>T	uc002mel.2	-	1	112	c.34G>A	c.(34-36)GTG>ATG	p.V12M		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	12	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						CACCAGTCCACCTCGGAGCTC	0.572													6	12					0	0	1	0	0
CLPP	8192	broad.mit.edu	37	19	6364601	6364601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6364601C>T	uc002mem.1	+	4	629	c.506C>T	c.(505-507)TCG>TTG	p.S169L	CLPP_uc002men.1_5'Flank	NM_006012	NP_006003	Q16740	CLPP_HUMAN	caseinolytic peptidase, ATP-dependent,	169					proteolysis	mitochondrial matrix	ATP binding|protein binding|serine-type endopeptidase activity			ovary(1)	1						ATGCGCCACTCGCTCCCCAAC	0.657													23	36					0	0	1	0	0
PSPN	5623	broad.mit.edu	37	19	6375600	6375600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6375600C>T	uc010xja.1	-	2	176	c.176G>A	c.(175-177)CGC>CAC	p.R59H		NM_004158	NP_004149	O60542	PSPN_HUMAN	persephin precursor	59					axon guidance|central nervous system development		growth factor activity			skin(1)	1						CAGGGCTCGGCGCAGGCGGGC	0.662													5	11					0	0	1	0	0
GTF2F1	2962	broad.mit.edu	37	19	6381394	6381394	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6381394G>A	uc002meq.2	-	9	1279	c.994C>T	c.(994-996)CCG>TCG	p.P332S	GTF2F1_uc010xjb.1_Missense_Mutation_p.P153S|GTF2F1_uc010xjc.1_Missense_Mutation_p.P247S	NM_002096	NP_002087	P35269	T2FA_HUMAN	general transcription factor IIF, polypeptide 1,	332	Glu-rich.				mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|response to virus|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cell junction|transcription factor TFIIF complex	catalytic activity|DNA binding|phosphatase activator activity|transcription coactivator activity|transcription factor binding				0						TTCTCCTGCGGGGTGGGTGcc	0.552													5	22					0	0	1	0	0
KHSRP	8570	broad.mit.edu	37	19	6421694	6421694	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6421694G>A	uc002mer.3	-	3	462	c.352C>T	c.(352-354)CCG>TCG	p.P118S		NM_003685	NP_003676	Q92945	FUBP2_HUMAN	KH-type splicing regulatory protein	118	Gly-rich.				mRNA processing|mRNA transport|regulation of transcription, DNA-dependent|RNA splicing, via transesterification reactions|transcription, DNA-dependent	cytosol|nucleus	DNA binding|protein binding|RNA binding			skin(1)	1						TTGCTCTCCGGTTGATCTGGG	0.582													32	109					0	0	1	0	0
SLC25A41	284427	broad.mit.edu	37	19	6433541	6433541	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6433541C>T	uc010dus.2	-	1	250	c.164G>A	c.(163-165)GGC>GAC	p.G55D	SLC25A41_uc010dut.2_5'UTR	NM_173637	NP_775908	Q8N5S1	S2541_HUMAN	solute carrier family 25, member 41	55					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						ATGCATGTGGCCAAACGCGTA	0.433													23	74					0	0	1	0	0
DENND1C	79958	broad.mit.edu	37	19	6467622	6467622	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6467622C>T	uc002mfe.2	-	23	2391	c.2299G>A	c.(2299-2301)GAA>AAA	p.E767K	DENND1C_uc002mfb.2_Missense_Mutation_p.E317K|DENND1C_uc002mfc.2_Missense_Mutation_p.E317K|DENND1C_uc002mfd.2_Missense_Mutation_p.E317K|DENND1C_uc010xje.1_Missense_Mutation_p.E723K	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	767						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						GCTCCTGGTTCCTCCCGTGGC	0.622													19	34					0	0	1	0	0
DENND1C	79958	broad.mit.edu	37	19	6468113	6468113	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6468113C>T	uc002mfe.2	-	23	1900	c.1808G>A	c.(1807-1809)TGG>TAG	p.W603*	DENND1C_uc002mfb.2_Nonsense_Mutation_p.W153*|DENND1C_uc002mfc.2_Nonsense_Mutation_p.W153*|DENND1C_uc002mfd.2_Nonsense_Mutation_p.W153*|DENND1C_uc010xje.1_Nonsense_Mutation_p.W559*	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	603						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						GTCTGGTTGCCATCTTGGTAT	0.537													13	25					0	0	1	0	0
DENND1C	79958	broad.mit.edu	37	19	6479870	6479870	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6479870C>T	uc002mfe.2	-	3	218	c.126G>A	c.(124-126)CAG>CAA	p.Q42Q	DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Intron	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	42	UDENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						GCCTGAATACCTGGTCCCTGA	0.652													12	21					0	0	1	0	0
TNFSF14	8740	broad.mit.edu	37	19	6665012	6665012	+	Silent	SNP	G	A	A	rs143839697		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6665012G>A	uc002mfk.1	-	5	1030	c.648C>T	c.(646-648)GTC>GTT	p.V216V	TNFSF14_uc002mfj.1_Silent_p.V180V	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	216	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding	p.V216V(1)		skin(1)	1						GCACACGGACGACCACCTTCT	0.622													39	83					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6678261	6678261	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6678261G>A	uc002mfm.2	-	40	4814	c.4752C>T	c.(4750-4752)TTC>TTT	p.F1584F	C3_uc002mfl.2_Silent_p.F320F	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1584	NTR.				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TGGGGCTGATGAACGTGCGCT	0.592													21	34					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6678411	6678411	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6678411G>A	uc002mfm.2	-	39	4748	c.4686C>T	c.(4684-4686)ATC>ATT	p.I1562I	C3_uc002mfl.2_Silent_p.I298I	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1562	NTR.				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CAATGGCCATGATGTACTCGT	0.577													11	26					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6685006	6685006	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6685006G>A	uc002mfm.2	-	30	4024	c.3962C>T	c.(3961-3963)TCA>TTA	p.S1321L	C3_uc002mfl.2_Missense_Mutation_p.S57L	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1321		Cleavage; by factor I.			complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TACCTCTTCTGATCGCAGGAG	0.597													19	34					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6685009	6685009	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6685009C>T	uc002mfm.2	-	30	4021	c.3959G>A	c.(3958-3960)CGA>CAA	p.R1320Q	C3_uc002mfl.2_Missense_Mutation_p.R56Q	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1320		Cleavage; by factor I.	R -> Q (in C3D; allotype C3'F02'; may inhibit IC3B synthesis).		complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CTCTTCTGATCGCAGGAGGCT	0.597													12	41					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6697549	6697549	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6697549G>A	uc002mfm.2	-	21	2664	c.2602C>T	c.(2602-2604)CAC>TAC	p.H868Y		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	868					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GCTGGATTGTGGAGTAGTTCC	0.592													8	44					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6697558	6697558	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6697558C>T	uc002mfm.2	-	21	2655	c.2593G>A	c.(2593-2595)GAA>AAA	p.E865K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	865					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TGGAGTAGTTCCACCCTCACC	0.612													9	37					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6697719	6697719	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6697719C>T	uc002mfm.2	-	20	2589	c.2527G>A	c.(2527-2529)GAG>AAG	p.E843K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	843					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TCCACCTGCTCGTTTCGAACA	0.587													41	30					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6697782	6697782	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6697782C>T	uc002mfm.2	-	20	2526	c.2464G>A	c.(2464-2466)GAG>AAG	p.E822K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	822					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ACTGTGACCTCGAAGGGGTCT	0.562													5	40					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6702214	6702214	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6702214C>T	uc002mfm.2	-	19	2426	c.2364G>A	c.(2362-2364)ACG>ACA	p.T788T		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	788					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TCATGAGCTTCGTAGAGATTC	0.512													14	60					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6702545	6702545	+	Missense_Mutation	SNP	C	T	T	rs143642234		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6702545C>T	uc002mfm.2	-	18	2353	c.2291G>A	c.(2290-2292)CGA>CAA	p.R764Q		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	764					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding	p.R764Q(1)		skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GAACTCACTTCGGGAAACGAT	0.478													37	104					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6711049	6711049	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6711049G>A	uc002mfm.2	-	12	1490	c.1428C>T	c.(1426-1428)CTC>CTT	p.L476L		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	476					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CCATTCGCAGGAGGAAGTTGA	0.597													41	187					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6711072	6711072	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6711072C>T	uc002mfm.2	-	12	1467	c.1405G>A	c.(1405-1407)GAG>AAG	p.E469K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	469					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TTGAGGGTCTCCCCGGGTCTG	0.602													26	199					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6711196	6711196	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6711196C>T	uc002mfm.2	-	12	1343	c.1281G>A	c.(1279-1281)AAG>AAA	p.K427K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	427					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GCTCCTGCTTCTTCGTGCGCA	0.433													12	51					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6712357	6712357	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6712357C>T	uc002mfm.2	-	11	1242	c.1180G>A	c.(1180-1182)GAG>AAG	p.E394K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	394					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ACAGTGTCCTCGCCCTGGACT	0.617													21	48					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6712527	6712527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6712527C>T	uc002mfm.2	-	10	1173	c.1111G>A	c.(1111-1113)GAC>AAC	p.D371N		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	371					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ACCATGAGGTCAAAGGGCATT	0.632													30	144					0	0	1	0	0
GPR108	56927	broad.mit.edu	37	19	6731105	6731105	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6731105G>A	uc002mfp.2	-	17	1498	c.1452C>T	c.(1450-1452)TCC>TCT	p.S484S	GPR108_uc010duv.2_Silent_p.S35S|GPR108_uc002mfn.2_Silent_p.S139S|GPR108_uc002mfo.3_Silent_p.S242S|GPR108_uc010duw.2_RNA	NM_001080452	NP_001073921	Q9NPR9	GP108_HUMAN	G protein-coupled receptor 108 isoform 1	484	Helical; Name=7; (Potential).					integral to membrane					0						AGGCCAGGGTGGAGCCCTCCA	0.697													13	31					0	0	1	0	0
GPR108	56927	broad.mit.edu	37	19	6733289	6733289	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6733289G>A	uc002mfp.2	-	9	793	c.747C>T	c.(745-747)CCC>CCT	p.P249P	GPR108_uc010duv.2_5'Flank|GPR108_uc002mfn.2_5'UTR|GPR108_uc002mfo.3_Silent_p.P7P|GPR108_uc010duw.2_RNA	NM_001080452	NP_001073921	Q9NPR9	GP108_HUMAN	G protein-coupled receptor 108 isoform 1	249						integral to membrane					0						GGAAGCCATCGGGGTTCTTCT	0.393													19	38					0	0	1	0	0
SH2D3A	10045	broad.mit.edu	37	19	6760821	6760821	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6760821C>T	uc002mft.2	-	3	441	c.247G>A	c.(247-249)GAG>AAG	p.E83K	SH2D3A_uc010xjg.1_Intron	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	83	SH2.				JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						GGGAATTGCTCATCCTCCAGT	0.637													20	54					0	0	1	0	0
VAV1	7409	broad.mit.edu	37	19	6832117	6832117	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6832117C>T	uc002mfu.1	+	15	1511	c.1414C>T	c.(1414-1416)CTC>TTC	p.L472F	VAV1_uc010xjh.1_Missense_Mutation_p.L440F|VAV1_uc010dva.1_Missense_Mutation_p.L472F|VAV1_uc002mfv.1_Missense_Mutation_p.L417F	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	472	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CCACATGTTCCTCCTGATCGA	0.567													16	36					0	0	1	0	0
VAV1	7409	broad.mit.edu	37	19	6832146	6832146	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6832146C>T	uc002mfu.1	+	15	1540	c.1443C>T	c.(1441-1443)GGC>GGT	p.G481G	VAV1_uc010xjh.1_Silent_p.G449G|VAV1_uc010dva.1_Silent_p.G481G|VAV1_uc002mfv.1_Silent_p.G426G	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	481	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						GTGCCCAGGGCTATGAGCTGT	0.552													17	35					0	0	1	0	0
VAV1	7409	broad.mit.edu	37	19	6833264	6833264	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6833264C>T	uc002mfu.1	+	16	1675	c.1578C>T	c.(1576-1578)ACC>ACT	p.T526T	VAV1_uc010xjh.1_Silent_p.T494T|VAV1_uc010dva.1_Silent_p.T526T|VAV1_uc002mfv.1_Silent_p.T471T	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	526	Phorbol-ester/DAG-type.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						TTGAGGAGACCACATCCTGCA	0.498													8	50					0	0	1	0	0
VAV1	7409	broad.mit.edu	37	19	6833918	6833919	+	Splice_Site	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6833918_6833919GG>AA	uc002mfu.1	+	19	1829	c.1732_splice	c.e19-1	p.D578_splice	VAV1_uc010xjh.1_Splice_Site_p.D546_splice|VAV1_uc010dva.1_Splice_Site_p.D578_splice|VAV1_uc002mfv.1_Splice_Site_p.D523_splice	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor						apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						TCTCCTTCCAGGACAAACTACA	0.535													31	76					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6896430	6896430	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6896430C>T	uc002mfw.2	+	3	154	c.116C>T	c.(115-117)ACC>ATC	p.T39I	EMR1_uc010dvc.2_Missense_Mutation_p.T39I|EMR1_uc010dvb.2_Missense_Mutation_p.T39I|EMR1_uc010xji.1_Missense_Mutation_p.T39I|EMR1_uc010xjj.1_Missense_Mutation_p.T39I	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	39	Extracellular (Potential).|EGF-like 1.				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					AGAGACAGTACCTTGTGCCCA	0.453													31	171					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6896531	6896531	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6896531G>A	uc002mfw.2	+	3	255	c.217G>A	c.(217-219)GAT>AAT	p.D73N	EMR1_uc010dvc.2_Missense_Mutation_p.D73N|EMR1_uc010dvb.2_Missense_Mutation_p.D73N|EMR1_uc010xji.1_Missense_Mutation_p.D73N|EMR1_uc010xjj.1_Missense_Mutation_p.D73N	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	73	Extracellular (Potential).|EGF-like 1.				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TCACTTCAAGGATCCAGGAGT	0.478													20	41					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6897452	6897452	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6897452C>T	uc002mfw.2	+	5	446	c.408C>T	c.(406-408)TGC>TGT	p.C136C	EMR1_uc010dvc.2_Silent_p.C136C|EMR1_uc010dvb.2_Silent_p.C84C|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Silent_p.C136C	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	136	Extracellular (Potential).|EGF-like 3; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TCAATGAGTGCCTCACCAGCA	0.478													25	46					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6916364	6916364	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6916364G>A	uc002mfw.2	+	12	1443	c.1405G>A	c.(1405-1407)GAA>AAA	p.E469K	EMR1_uc010dvc.2_Missense_Mutation_p.E469K|EMR1_uc010dvb.2_Missense_Mutation_p.E417K|EMR1_uc010xji.1_Missense_Mutation_p.E328K|EMR1_uc010xjj.1_Missense_Mutation_p.E292K	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	469	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CACAATTGAGGAATCTGAATC	0.343													38	111					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6919588	6919588	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6919588G>T	uc002mfw.2	+	13	1488	c.1450G>T	c.(1450-1452)GTG>TTG	p.V484L	EMR1_uc010dvc.2_Missense_Mutation_p.V484L|EMR1_uc010dvb.2_Missense_Mutation_p.V432L|EMR1_uc010xji.1_Missense_Mutation_p.V343L|EMR1_uc010xjj.1_Missense_Mutation_p.V307L	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	484	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TGTCTCCTTTGTGGGCATGGA	0.443													55	101					7.41606e-26	7.45964e-26	1	1	0
EMR1	2015	broad.mit.edu	37	19	6937593	6937593	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:6937593G>A	uc002mfw.2	+	20	2627	c.2589G>A	c.(2587-2589)ACG>ACA	p.T863T	EMR1_uc010dvc.2_Silent_p.T798T|EMR1_uc010dvb.2_Silent_p.T844T|EMR1_uc010xji.1_Silent_p.T722T|EMR1_uc010xjj.1_Silent_p.T686T	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	863	Cytoplasmic (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CTGGGAAGACGAAGCCCAGCT	0.537													29	131					0	0	1	0	0
ZNF557	79230	broad.mit.edu	37	19	7076403	7076403	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7076403C>T	uc002mgb.2	+	5	596	c.111C>T	c.(109-111)ACC>ACT	p.T37T	ZNF557_uc002mga.2_Silent_p.T44T|ZNF557_uc002mgc.2_Silent_p.T44T	NM_001044388	NP_001037853	Q8N988	ZN557_HUMAN	zinc finger protein 557 isoform b	37	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2				Lung(535;0.179)		GCTTGGTGACCTTTGAGGATG	0.582													45	111					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7122765	7122765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7122765G>A	uc002mgd.1	-	19	3498	c.3389C>T	c.(3388-3390)CCC>CTC	p.P1130L	INSR_uc002mge.1_Missense_Mutation_p.P1118L	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	1130	Protein kinase.|Cytoplasmic (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AAGGGTAGGGGGAGGGCGGCC	0.582													23	48					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7152762	7152762	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7152762G>A	uc002mgd.1	-	10	2315	c.2206C>T	c.(2206-2208)CTG>TTG	p.L736L	INSR_uc002mge.1_Silent_p.L736L|INSR_uc002mgf.2_Silent_p.L736L	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	736					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACGTTGTGCAGGTAATCCTCA	0.542													62	156					0	0	1	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7509157	7509157	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7509157C>T	uc002mgi.2	+	4	1117	c.864C>T	c.(862-864)GCC>GCT	p.A288A	ARHGEF18_uc010xjm.1_Silent_p.A130A|ARHGEF18_uc002mgh.2_Silent_p.A130A|ARHGEF18_uc002mgj.1_5'Flank	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	288	DH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				ACTCCAGGGCCCTGCAGGAGG	0.617													19	51					0	0	1	0	0
C19orf45	374877	broad.mit.edu	37	19	7570318	7570318	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7570318G>A	uc002mgm.2	+	5	1032	c.891G>A	c.(889-891)GAG>GAA	p.E297E	C19orf45_uc010xjo.1_5'Flank	NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	297											0						ATGCCAGGGAGCCAGGTGAGA	0.642													20	73					0	0	1	0	0
ZNF358	140467	broad.mit.edu	37	19	7584262	7584262	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7584262C>T	uc002mgn.2	+	2	304	c.134C>T	c.(133-135)CCT>CTT	p.P45L		NM_018083	NP_060553	Q9NW07	ZN358_HUMAN	zinc finger protein 358	45					embryonic forelimb morphogenesis|neural tube development|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						GACCCAGAGCCTGATCCTGAA	0.582													36	73					0	0	1	0	0
PNPLA6	10908	broad.mit.edu	37	19	7607462	7607462	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7607462C>T	uc010xjq.1	+	13	1490	c.1295C>T	c.(1294-1296)CCC>CTC	p.P432L	PNPLA6_uc002mgq.1_Missense_Mutation_p.P384L|PNPLA6_uc010xjp.1_Missense_Mutation_p.P384L|PNPLA6_uc002mgr.1_Missense_Mutation_p.P384L|PNPLA6_uc002mgs.2_Missense_Mutation_p.P423L	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	423	Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						CAGGGTGGCCCCCGCTCCGAC	0.532													9	38					0	0	1	0	0
PNPLA6	10908	broad.mit.edu	37	19	7618780	7618780	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7618780C>T	uc010xjq.1	+	21	2505	c.2310C>T	c.(2308-2310)CCC>CCT	p.P770P	PNPLA6_uc002mgq.1_Silent_p.P722P|PNPLA6_uc010xjp.1_Silent_p.P695P|PNPLA6_uc002mgr.1_Silent_p.P722P|PNPLA6_uc002mgs.2_Silent_p.P760P|PNPLA6_uc002mgt.1_5'Flank	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	761	Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						TGGGTGTGCCCCCACACTCGG	0.517													14	54					0	0	1	0	0
PNPLA6	10908	broad.mit.edu	37	19	7619939	7619939	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7619939C>T	uc010xjq.1	+	24	3020	c.2825C>T	c.(2824-2826)TCG>TTG	p.S942L	PNPLA6_uc002mgq.1_Missense_Mutation_p.S894L|PNPLA6_uc010xjp.1_Missense_Mutation_p.S867L|PNPLA6_uc002mgr.1_Missense_Mutation_p.S894L|PNPLA6_uc002mgs.2_Missense_Mutation_p.S932L|PNPLA6_uc002mgt.1_RNA	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	933	Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						CGCCTCTTTTCGCGCCGCAGC	0.731													6	8					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7670265	7670265	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7670265C>T	uc002mgv.3	+	2	403	c.302C>T	c.(301-303)CCC>CTC	p.P101L	KIAA1543_uc002mgu.3_Missense_Mutation_p.P101L	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	101					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CCCCCCAACCCCTCTGCACTG	0.682													25	129					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7673059	7673059	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7673059C>T	uc002mgv.3	+	5	770	c.669C>T	c.(667-669)TTC>TTT	p.F223F	KIAA1543_uc002mgu.3_Silent_p.F250F	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	223	CH.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CCCCCTGCTTCCCGACGGTGA	0.667													23	66					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7675417	7675417	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7675417C>T	uc002mgv.3	+	6	917	c.816C>T	c.(814-816)CTC>CTT	p.L272L	KIAA1543_uc002mgu.3_Silent_p.L299L	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	272	CH.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						ACCTCCAGCTCGTGCAGGATT	0.612													53	158					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7675818	7675818	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7675818G>A	uc002mgv.3	+	8	1150	c.1049_splice	c.e8+1	p.S350_splice	KIAA1543_uc002mgu.3_Splice_Site_p.S377_splice	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2						epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GCGGCAGTAGGTACGCTCCCC	0.642													23	77					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7675993	7675993	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7675993C>T	uc002mgv.3	+	9	1163	c.1062C>T	c.(1060-1062)TTC>TTT	p.F354F	KIAA1543_uc002mgu.3_Silent_p.F381F	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	354					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CTCCTGTCTTCACCTTCCGCC	0.652													41	81					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7677065	7677065	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7677065G>A	uc002mgv.3	+	11	1787	c.1686G>A	c.(1684-1686)GTG>GTA	p.V562V	KIAA1543_uc002mgu.3_Silent_p.V589V|KIAA1543_uc002mgw.2_5'Flank	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	562					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						ACTCCGAGGTGAAAATGACCA	0.672													7	13					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7681496	7681496	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7681496G>A	uc002mgv.3	+	14	3301	c.3200G>A	c.(3199-3201)AGG>AAG	p.R1067K	KIAA1543_uc002mgu.3_Missense_Mutation_p.R1094K|KIAA1543_uc002mgw.2_Missense_Mutation_p.R197K	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	1067					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GGGGTGAAGAGGCCCACGTCT	0.612													17	49					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7682521	7682521	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7682521G>A	uc002mgv.3	+	16	3519	c.3418G>A	c.(3418-3420)GAA>AAA	p.E1140K	KIAA1543_uc002mgu.3_Missense_Mutation_p.E1167K|KIAA1543_uc002mgw.2_Missense_Mutation_p.E270K	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	1140	CKK.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CAAGGTGAACGAACCGCAGAA	0.597													11	35					0	0	1	0	0
XAB2	56949	broad.mit.edu	37	19	7684729	7684729	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7684729G>A	uc002mgx.2	-	18	2436	c.2410C>T	c.(2410-2412)CGG>TGG	p.R804W		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	804					transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						AGCTCCTCCCGGGAGGCGTCA	0.682								Direct_reversal_of_damage|NER					35	128					0	0	1	0	0
STXBP2	6813	broad.mit.edu	37	19	7705860	7705860	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7705860C>T	uc002mha.3	+	6	445	c.400C>T	c.(400-402)CAC>TAC	p.H134Y	STXBP2_uc002mhb.3_Missense_Mutation_p.H131Y|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Missense_Mutation_p.H145Y|STXBP2_uc010dvk.2_Missense_Mutation_p.H102Y|STXBP2_uc002mhc.3_5'UTR|STXBP2_uc010dvl.1_Missense_Mutation_p.H295Y	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	134					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						GAAGGAGATTCACCTTGCCTT	0.627													36	59					0	0	1	0	0
STXBP2	6813	broad.mit.edu	37	19	7707367	7707367	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7707367G>A	uc002mha.3	+	10	892	c.847G>A	c.(847-849)GAG>AAG	p.E283K	STXBP2_uc002mhb.3_Missense_Mutation_p.E280K|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Missense_Mutation_p.E294K|STXBP2_uc010dvk.2_Missense_Mutation_p.E251K|STXBP2_uc002mhc.3_Missense_Mutation_p.E51K|STXBP2_uc002mhe.1_5'Flank	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	283					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						CTTGCTGGACGAGGACGATGA	0.662													56	143					0	0	1	0	0
STXBP2	6813	broad.mit.edu	37	19	7709559	7709559	+	Silent	SNP	C	T	T	rs139160342	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7709559C>T	uc002mha.3	+	14	1212	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I	STXBP2_uc002mhb.3_Silent_p.I386I|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Silent_p.I400I|STXBP2_uc010dvk.2_Silent_p.I357I|STXBP2_uc002mhc.3_Silent_p.I157I|STXBP2_uc002mhe.1_Silent_p.I17I	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	389					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						TGAAGCTGATCGTTCCGGTGC	0.657													22	47					0	0	1	0	0
STXBP2	6813	broad.mit.edu	37	19	7711159	7711159	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7711159G>A	uc002mha.3	+	16	1426	c.1381G>A	c.(1381-1383)GAG>AAG	p.E461K	STXBP2_uc002mhb.3_Missense_Mutation_p.E458K|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Missense_Mutation_p.E472K|STXBP2_uc010dvk.2_Missense_Mutation_p.E429K|STXBP2_uc002mhc.3_Intron|STXBP2_uc002mhe.1_Missense_Mutation_p.E89K	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	461					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						CAGCCGGCTGGAGCCGAGAGA	0.672													3	5					0	0	1	0	0
STXBP2	6813	broad.mit.edu	37	19	7712089	7712089	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7712089C>T	uc002mha.3	+	17	1539	c.1494C>T	c.(1492-1494)TTC>TTT	p.F498F	STXBP2_uc002mhb.3_Silent_p.F495F|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Silent_p.F509F|STXBP2_uc010dvk.2_Silent_p.F466F|STXBP2_uc002mhc.3_Silent_p.F234F|STXBP2_uc002mhe.1_3'UTR	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	498					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						TGTGGCCCTTCGTATCCGACC	0.627													20	54					0	0	1	0	0
RETN	56729	broad.mit.edu	37	19	7734761	7734761	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7734761G>A	uc002mhf.1	+	3	219	c.173G>A	c.(172-174)GGG>GAG	p.G58E	RETN_uc002mhg.1_Missense_Mutation_p.G58E|RETN_uc010dvm.1_Intron	NM_020415	NP_065148	Q9HD89	RETN_HUMAN	resistin	58							hormone activity			ovary(1)	1						ACCTCCAGGGGGGACCTGGCT	0.617													15	33					0	0	1	0	0
C19orf59	199675	broad.mit.edu	37	19	7742573	7742573	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7742573G>A	uc002mhh.1	+	2	170	c.145G>A	c.(145-147)GAC>AAC	p.D49N		NM_174918	NP_777578	Q8IX19	MCEM1_HUMAN	mast cell-expressed membrane protein 1	49	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						CAAAAATCAGGACCATGCAAA	0.567											OREG0025208	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	49					0	0	1	0	0
FCER2	2208	broad.mit.edu	37	19	7754151	7754151	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7754151C>T	uc002mhn.2	-	11	1078	c.894G>A	c.(892-894)GAG>GAA	p.E298E	FCER2_uc010xjs.1_Silent_p.E220E|FCER2_uc010xjt.1_Silent_p.E220E|FCER2_uc002mhm.2_Silent_p.E298E	NM_002002	NP_001993	P06734	FCER2_HUMAN	Fc fragment of IgE, low affinity II, receptor	298	Extracellular (Potential).				positive regulation of killing of cells of other organism|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of nitric-oxide synthase activity	extracellular region|integral to plasma membrane	IgE binding|integrin binding|receptor activity|sugar binding				0						GTCCCATGGACTCCGCGGAAC	0.672													8	20					0	0	1	0	0
FCER2	2208	broad.mit.edu	37	19	7755310	7755310	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7755310G>A	uc002mhn.2	-	9	787	c.603C>T	c.(601-603)ATC>ATT	p.I201I	FCER2_uc010xjs.1_Silent_p.I123I|FCER2_uc010xjt.1_Silent_p.I123I|FCER2_uc002mhm.2_Silent_p.I201I	NM_002002	NP_001993	P06734	FCER2_HUMAN	Fc fragment of IgE, low affinity II, receptor	201	C-type lectin.|Extracellular (Potential).				positive regulation of killing of cells of other organism|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of nitric-oxide synthase activity	extracellular region|integral to plasma membrane	IgE binding|integrin binding|receptor activity|sugar binding				0						CCGGGCTGTGGATGCTGACCA	0.637													17	53					0	0	1	0	0
FCER2	2208	broad.mit.edu	37	19	7761754	7761754	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7761754C>T	uc002mhn.2	-	8	610	c.426G>A	c.(424-426)CGG>CGA	p.R142R	FCER2_uc010xjs.1_Silent_p.R64R|FCER2_uc010xjt.1_Silent_p.R64R|FCER2_uc002mhm.2_Silent_p.R142R|FCER2_uc010dvo.2_Silent_p.R142R	NM_002002	NP_001993	P06734	FCER2_HUMAN	Fc fragment of IgE, low affinity II, receptor	142	Extracellular (Potential).				positive regulation of killing of cells of other organism|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of nitric-oxide synthase activity	extracellular region|integral to plasma membrane	IgE binding|integrin binding|receptor activity|sugar binding				0						TCACCTCCTCCCGGAGTCTTT	0.587													4	9					0	0	1	0	0
CLEC4G	339390	broad.mit.edu	37	19	7794920	7794920	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7794920C>T	uc002mhp.3	-	7	681	c.612G>A	c.(610-612)GGG>GGA	p.G204G		NM_198492	NP_940894	Q6UXB4	CLC4G_HUMAN	C-type lectin domain family 4, member G	204	Extracellular (Potential).|C-type lectin.					integral to membrane	protein binding|sugar binding				0						CATCCAGGCCCCCAACGATCA	0.677													6	10					0	0	1	0	0
CLEC4G	339390	broad.mit.edu	37	19	7796584	7796584	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7796584G>A	uc002mhp.3	-	2	198	c.129C>T	c.(127-129)GTC>GTT	p.V43V		NM_198492	NP_940894	Q6UXB4	CLC4G_HUMAN	C-type lectin domain family 4, member G	43	Helical; Signal-anchor for type II membrane protein; (Potential).					integral to membrane	protein binding|sugar binding				0						CAGCCCAAAGGACTGTGGTGA	0.607													19	34					0	0	1	0	0
CD209	30835	broad.mit.edu	37	19	7807996	7807996	+	Missense_Mutation	SNP	C	T	T	rs11465393	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7807996C>T	uc002mht.2	-	7	1211	c.1144G>A	c.(1144-1146)GCC>ACC	p.A382T	CD209_uc010xju.1_Missense_Mutation_p.A221T|CD209_uc010dvp.2_3'UTR|CD209_uc002mhr.2_Missense_Mutation_p.A358T|CD209_uc002mhs.2_Missense_Mutation_p.A312T|CD209_uc002mhu.2_Missense_Mutation_p.A290T|CD209_uc010dvq.2_Missense_Mutation_p.A376T|CD209_uc002mhq.2_Missense_Mutation_p.A382T|CD209_uc002mhv.2_Missense_Mutation_p.A358T|CD209_uc002mhx.2_Missense_Mutation_p.A338T|CD209_uc002mhw.2_Missense_Mutation_p.A246T|CD209_uc010dvr.2_Missense_Mutation_p.A146T	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	382	Extracellular (Probable).				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						GAGCAGGAGGCTGCGGACTTT	0.522													74	165					0	0	1	0	0
CD209	30835	broad.mit.edu	37	19	7810695	7810695	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7810695G>A	uc002mht.2	-	4	524	c.457C>T	c.(457-459)CTG>TTG	p.L153L	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.L129L|CD209_uc002mhr.2_Silent_p.L129L|CD209_uc002mhs.2_Silent_p.L129L|CD209_uc002mhu.2_Silent_p.L153L|CD209_uc010dvq.2_Silent_p.L153L|CD209_uc002mhq.2_Silent_p.L153L|CD209_uc002mhv.2_Silent_p.L129L|CD209_uc002mhx.2_Silent_p.L109L|CD209_uc002mhw.2_Silent_p.L109L|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	153	Extracellular (Probable).|7 X approximate tandem repeats.|3.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						GCAGCCTTCAGCCAGGTCAGC	0.562													76	178					0	0	1	0	0
CD209	30835	broad.mit.edu	37	19	7812358	7812358	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7812358G>A	uc002mht.2	-	1	107	c.40C>T	c.(40-42)CTC>TTC	p.L14F	CD209_uc010xju.1_Missense_Mutation_p.L14F|CD209_uc010dvp.2_5'UTR|CD209_uc002mhr.2_5'UTR|CD209_uc002mhs.2_5'UTR|CD209_uc002mhu.2_Missense_Mutation_p.L14F|CD209_uc010dvq.2_Missense_Mutation_p.L14F|CD209_uc002mhq.2_5'UTR|CD209_uc002mhv.2_Missense_Mutation_p.L14F|CD209_uc002mhx.2_Missense_Mutation_p.L14F|CD209_uc002mhw.2_Missense_Mutation_p.L14F|CD209_uc010dvr.2_Missense_Mutation_p.L14F	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	14	Endocytosis signal.|Cytoplasmic (Probable).			LL->AA: Loss of antigen internalization by endocytosis.	cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						TCACCCAGGAGGCCCAGCTGC	0.612													96	221					0	0	1	0	0
CLEC4M	10332	broad.mit.edu	37	19	7828164	7828164	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7828164C>T	uc002mih.2	+	1	130	c.12C>T	c.(10-12)TCC>TCT	p.S4S	CLEC4M_uc010xjv.1_Silent_p.S4S|CLEC4M_uc002mhy.2_Silent_p.S4S|CLEC4M_uc010xjw.1_Silent_p.S4S|CLEC4M_uc010dvt.2_Silent_p.S4S|CLEC4M_uc010dvs.2_Silent_p.S4S|CLEC4M_uc010xjx.1_Silent_p.S4S|CLEC4M_uc002mhz.2_Silent_p.S4S|CLEC4M_uc002mic.2_Silent_p.S4S|CLEC4M_uc002mia.2_Silent_p.S4S	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	4	Cytoplasmic (Probable).				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						TGAGTGACTCCAAGGAACCAA	0.547													70	47					0	0	1	0	0
CLEC4M	10332	broad.mit.edu	37	19	7830111	7830111	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7830111C>T	uc002mih.2	+	3	289	c.171C>T	c.(169-171)TCC>TCT	p.S57S	CLEC4M_uc010xjv.1_Intron|CLEC4M_uc002mhy.2_Intron|CLEC4M_uc010xjw.1_Intron|CLEC4M_uc010dvt.2_Silent_p.S57S|CLEC4M_uc010dvs.2_Silent_p.S56S|CLEC4M_uc010xjx.1_Silent_p.S29S|CLEC4M_uc002mhz.2_Silent_p.S57S|CLEC4M_uc002mic.2_Silent_p.S29S|CLEC4M_uc002mia.2_Intron	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	57	Helical; Signal-anchor for type II membrane protein; (Probable).				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						AACTCCTCTCCTTCATGCTCT	0.622													34	101					0	0	1	0	0
CLEC4M	10332	broad.mit.edu	37	19	7830562	7830562	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7830562G>A	uc002mih.2	+	4	371	c.253G>A	c.(253-255)GAG>AAG	p.E85K	CLEC4M_uc010xjv.1_Missense_Mutation_p.E57K|CLEC4M_uc002mhy.2_Missense_Mutation_p.E29K|CLEC4M_uc010xjw.1_Missense_Mutation_p.E64K|CLEC4M_uc010dvt.2_Missense_Mutation_p.E85K|CLEC4M_uc010dvs.2_Missense_Mutation_p.E84K|CLEC4M_uc010xjx.1_Missense_Mutation_p.E57K|CLEC4M_uc002mhz.2_Missense_Mutation_p.E85K|CLEC4M_uc002mic.2_Missense_Mutation_p.E57K|CLEC4M_uc002mia.2_Missense_Mutation_p.E64K	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	85	Extracellular (Probable).				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						GGAACAATCCGAGCAAGACGC	0.418													37	100					0	0	1	0	0
CLEC4M	10332	broad.mit.edu	37	19	7833869	7833869	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7833869G>A	uc002mih.2	+	8	1244	c.1126G>A	c.(1126-1128)GAA>AAA	p.E376K	CLEC4M_uc010xjw.1_Missense_Mutation_p.E332K|CLEC4M_uc010dvt.2_Missense_Mutation_p.E353K|CLEC4M_uc010dvs.2_Missense_Mutation_p.E375K|CLEC4M_uc010xjx.1_Missense_Mutation_p.E348K|CLEC4M_uc002mhz.2_3'UTR|CLEC4M_uc002mic.2_3'UTR|CLEC4M_uc002mia.2_Missense_Mutation_p.E263K	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	399	Extracellular (Probable).				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						CTTCAGAGACGAATAGTTGTT	0.498													17	64					0	0	1	0	0
SNAPC2	6618	broad.mit.edu	37	19	7987638	7987638	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:7987638C>T	uc002miw.1	+	5	1017	c.994C>T	c.(994-996)CCT>TCT	p.P332S	SNAPC2_uc002mix.1_RNA	NM_003083	NP_003074	Q13487	SNPC2_HUMAN	small nuclear RNA activating complex,	332					snRNA transcription|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	sequence-specific DNA binding transcription factor activity				0						GGCAGCCACCCCTGCCAGGTG	0.687													39	103					0	0	1	0	0
CCL25	6370	broad.mit.edu	37	19	8121312	8121312	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8121312G>A	uc002mjd.2	+	3	254	c.254G>A	c.(253-255)AGA>AAA	p.R85K	CCL25_uc002mjc.3_Missense_Mutation_p.R85K|CCL25_uc010dvy.1_Intron	NM_005624	NP_005615	O15444	CCL25_HUMAN	small inducible cytokine A25 precursor	85					chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response	extracellular space|soluble fraction	CCR10 chemokine receptor binding|chemokine activity|hormone activity				0						GAGGTGCAGAGAGCCATGAAG	0.557													11	32					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8130986	8130986	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8130986G>A	uc002mjf.2	-	63	8268	c.8247C>T	c.(8245-8247)TTC>TTT	p.F2749F	FBN3_uc002mje.2_Silent_p.F545F	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2749						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GCATGCGAAAGAAACCTTGCT	0.692													31	101					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8130997	8130997	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8130997C>T	uc002mjf.2	-	63	8257	c.8236G>A	c.(8236-8238)GAG>AAG	p.E2746K	FBN3_uc002mje.2_Missense_Mutation_p.E542K	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2746						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AAACCTTGCTCGTTTCCGCGG	0.687													30	91					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8136997	8136997	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8136997C>T	uc002mjf.2	-	62	8044	c.8023G>A	c.(8023-8025)GAA>AAA	p.E2675K	FBN3_uc002mje.2_Missense_Mutation_p.E471K	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2675						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ATCTTGCATTCGTAGCAGGCT	0.662													63	147					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8146261	8146261	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8146261C>T	uc002mjf.2	-	57	7338	c.7317G>A	c.(7315-7317)GAG>GAA	p.E2439E	FBN3_uc002mje.2_Silent_p.E278E	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2439	EGF-like 39; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TCCTGCCATCCTCCTCCAGCA	0.582													11	29					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8151201	8151201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8151201C>T	uc002mjf.2	-	54	6784	c.6763G>A	c.(6763-6765)GAA>AAA	p.E2255K	FBN3_uc002mje.2_Missense_Mutation_p.E94K	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2255	EGF-like 37; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GCGTGGCATTCATTGTCATCT	0.652													49	114					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8152010	8152010	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8152010G>A	uc002mjf.2	-	53	6726	c.6705C>T	c.(6703-6705)GTC>GTT	p.V2235V	FBN3_uc002mje.2_Silent_p.V74V	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2235	EGF-like 36; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CTGGGGGACAGACGCACGCGA	0.627													15	59					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8168563	8168563	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8168563C>T	uc002mjf.2	-	38	4843	c.4822G>A	c.(4822-4824)GAA>AAA	p.E1608K		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1608	EGF-like 25; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GTGGAGCATTCGTCAATATCT	0.562													13	35					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8174515	8174515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8174515C>T	uc002mjf.2	-	34	4477	c.4456G>A	c.(4456-4458)GAC>AAC	p.D1486N		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1486						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ATGGACTCACCCACGCAGCCC	0.567													30	74					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8176871	8176871	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8176871G>A	uc002mjf.2	-	30	3972	c.3951C>T	c.(3949-3951)TTC>TTT	p.F1317F		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1317	EGF-like 19; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGTGACATTCGAAGCCATCCC	0.637													35	60					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8180457	8180457	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8180457G>A	uc002mjf.2	-	29	3801	c.3780C>T	c.(3778-3780)TCC>TCT	p.S1260S		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1260	EGF-like 18; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GGCAGACAAAGGAACCCTTCG	0.612													12	43					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8181592	8181592	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8181592G>A	uc002mjf.2	-	28	3699	c.3678C>T	c.(3676-3678)GGC>GGT	p.G1226G		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1226	EGF-like 17.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGGCCATGAAGCCATCATAGC	0.627													14	109					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8182167	8182167	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8182167C>T	uc002mjf.2	-	27	3493	c.3472G>A	c.(3472-3474)GAA>AAA	p.E1158K		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1158	EGF-like 16; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ACCCGGCATTCGTTGATGTCT	0.388													7	29					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8188758	8188758	+	Missense_Mutation	SNP	C	T	T	rs138166112		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8188758C>T	uc002mjf.2	-	22	2887	c.2866G>A	c.(2866-2868)GAT>AAT	p.D956N		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	956	TB 5.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GACTCGGGATCCGGGCAGGCC	0.662													9	37					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8188819	8188819	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8188819C>T	uc002mjf.2	-	22	2826	c.2805G>A	c.(2803-2805)CGG>CGA	p.R935R		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	935	TB 5.		R -> L.			proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AGACGTCCATCCGGTACTTGC	0.647													13	33					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8193951	8193951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8193951G>A	uc002mjf.2	-	17	2278	c.2257C>T	c.(2257-2259)CCC>TCC	p.P753S		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	753	EGF-like 9; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGGAAGCCGGGGGGGCAGGAG	0.602													25	67					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8196452	8196452	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8196452G>A	uc002mjf.2	-	14	1997	c.1976C>T	c.(1975-1977)CCT>CTT	p.P659L		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	659	TB 3.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GTCTTTGGCAGGACAAAGCTG	0.642													12	102					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8200926	8200927	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8200926_8200927GG>AA	uc002mjf.2	-	12	1530_1531	c.1509_1510CC>TT	c.(1507-1512)GGCCGC>GGTTGC	p.R504C		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	504	EGF-like 5; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent	p.R504L(1)		ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TTGACACAGCGGCCCAGGTGAC	0.634													7	25					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8212211	8212211	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8212211C>T	uc002mjf.2	-	1	175	c.154G>A	c.(154-156)GGC>AGC	p.G52S		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	52						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGCAAGATGCCTGGGCTGCCC	0.692													4	10					0	0	1	0	0
KANK3	256949	broad.mit.edu	37	19	8397899	8397899	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8397899C>T	uc010dwa.2	-	7	2001	c.1935G>A	c.(1933-1935)ACG>ACA	p.T645T	KANK3_uc002mjp.1_Missense_Mutation_p.G191R	NM_198471	NP_940873	Q6NY19	KANK3_HUMAN	ankyrin repeat domain 47	645	ANK 1.										0						GGCTCTGACCCGTATCCAGGA	0.632													4	14					0	0	1	0	0
HNRNPM	4670	broad.mit.edu	37	19	8530211	8530212	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8530211_8530212CC>TT	uc010dwe.2	+	6	522_523	c.442_443CC>TT	c.(442-444)CCT>TTT	p.P148F	HNRNPM_uc010dwc.1_Missense_Mutation_p.P148F|HNRNPM_uc010xke.1_Missense_Mutation_p.P148F|HNRNPM_uc010dwd.2_Missense_Mutation_p.P148F|HNRNPM_uc002mka.2_Missense_Mutation_p.P28F	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	148	RRM 1.				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						GTTTTAGGATCCTGATGGTGAA	0.46													17	176					0	0	1	0	0
HNRNPM	4670	broad.mit.edu	37	19	8531249	8531250	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8531249_8531250CC>TT	uc010dwe.2	+	7	841_842	c.761_762CC>TT	c.(760-762)TCC>TTT	p.S254F	HNRNPM_uc010dwc.1_Missense_Mutation_p.S254F|HNRNPM_uc010xke.1_Missense_Mutation_p.S215F|HNRNPM_uc010dwd.2_Missense_Mutation_p.S215F|HNRNPM_uc002mka.2_Missense_Mutation_p.S134F	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	254	RRM 2.				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						TTTGAACAGTCCATTGAAGCTG	0.396													51	137					0	0	1	0	0
PRAM1	84106	broad.mit.edu	37	19	8563993	8563993	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8563993G>A	uc002mkd.2	-	2	719	c.699C>T	c.(697-699)GTC>GTT	p.V233V	PRAM1_uc002mkc.2_Silent_p.V233V	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	281	Pro-rich.						lipid binding|protein binding				0						GGAGGCCACCGACCTGAGGCT	0.632													13	32					0	0	1	0	0
ZNF414	84330	broad.mit.edu	37	19	8576620	8576620	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8576620G>A	uc002mkf.2	-	5	873	c.755C>T	c.(754-756)CCG>CTG	p.P252L	ZNF414_uc002mke.3_Missense_Mutation_p.P252L|ZNF414_uc010dwf.2_Missense_Mutation_p.P241L	NM_032370	NP_115746	Q96IQ9	ZN414_HUMAN	zinc finger protein 414 isoform 2	252					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGGCAGGAACGGTCCGGTGGG	0.766													3	4					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8590392	8590392	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8590392G>A	uc002mkg.2	-	25	2939	c.2825C>T	c.(2824-2826)CCT>CTT	p.P942L		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	942						unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CGCCCGGGTAGGGGCTTGGGA	0.607													29	43					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8591700	8591700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8591700C>T	uc002mkg.2	-	23	2708	c.2594G>A	c.(2593-2595)AGG>AAG	p.R865K		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	865						unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GGGCAGGGGCCTCCGCGTCGC	0.672													7	19					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8601135	8601135	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8601135C>T	uc002mkg.2	-	19	2157	c.2043_splice	c.e19+1	p.S681_splice		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF							unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						AACACACTCACCGACTCTGGG	0.373													16	102					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8601239	8601239	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8601239C>T	uc002mkg.2	-	19	2054	c.1940G>A	c.(1939-1941)GGG>GAG	p.G647E		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	647	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GCGTTCGTCCCCACGCCACCG	0.652													7	86					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8609249	8609249	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8609249C>T	uc002mkg.2	-	14	1570	c.1456G>A	c.(1456-1458)GCT>ACT	p.A486T		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	486	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GTCCCCACAGCCGCCTGCAGC	0.672													13	28					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8610561	8610561	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8610561G>A	uc002mkg.2	-	13	1443	c.1329C>T	c.(1327-1329)GTC>GTT	p.V443V	MYO1F_uc002mkh.2_3'UTR	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	443	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GGTCACAGACGACCTTGTTGT	0.572													71	321					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8615558	8615558	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8615558C>T	uc002mkg.2	-	9	906	c.792G>A	c.(790-792)GGG>GGA	p.G264G	MYO1F_uc002mkh.2_Silent_p.G264G	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	264	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						TGGGCGGGATCCCAATAACCT	0.602													24	77					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8619417	8619417	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8619417C>T	uc002mkg.2	-	4	384	c.270G>A	c.(268-270)ACG>ACA	p.T90T	MYO1F_uc002mkh.2_Silent_p.T90T|MYO1F_uc010xkf.1_Silent_p.T90T	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	90	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						ACATGTTGTCCGTGAGGGCGT	0.587													35	123					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651042	8651042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8651042C>T	uc002mkj.1	-	22	2898	c.2624G>A	c.(2623-2625)AGG>AAG	p.R875K	ADAMTS10_uc002mki.1_Missense_Mutation_p.R362K|ADAMTS10_uc002mkk.1_Missense_Mutation_p.R507K	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	875	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GGCGCGCTGCCTTTTGGGCAG	0.662											OREG0025221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	28					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651597	8651597	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8651597C>T	uc002mkj.1	-	20	2522	c.2248G>A	c.(2248-2250)GGA>AGA	p.G750R	ADAMTS10_uc002mki.1_Missense_Mutation_p.G237R|ADAMTS10_uc002mkk.1_Missense_Mutation_p.G382R	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	750	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						TCCTGGTCTCCCTTCAGGGCT	0.637											OREG0025221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	87					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8654132	8654132	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8654132C>T	uc002mkj.1	-	18	2426	c.2152G>A	c.(2152-2154)GGG>AGG	p.G718R	ADAMTS10_uc002mki.1_Missense_Mutation_p.G205R|ADAMTS10_uc002mkk.1_Missense_Mutation_p.G350R	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	718	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						TCACCGGCCCCAGGTGAGGCT	0.637													18	54					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8656696	8656696	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8656696G>A	uc002mkj.1	-	15	2059	c.1785C>T	c.(1783-1785)TCC>TCT	p.S595S	ADAMTS10_uc002mki.1_Missense_Mutation_p.P86L|ADAMTS10_uc002mkk.1_Silent_p.S227S	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	595	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CCGTGTTGCAGGAGCGGTGCC	0.512													24	105					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8656896	8656896	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8656896C>T	uc002mkj.1	-	14	1953	c.1679G>A	c.(1678-1680)AGC>AAC	p.S560N	ADAMTS10_uc002mki.1_Missense_Mutation_p.A51T|ADAMTS10_uc002mkk.1_Missense_Mutation_p.S192N	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	560	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						ACAGGTCCGGCTGCAGTCGCC	0.711													11	33					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8657649	8657649	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8657649C>T	uc002mkj.1	-	13	1859	c.1585G>A	c.(1585-1587)GGG>AGG	p.G529R	ADAMTS10_uc002mki.1_5'Flank|ADAMTS10_uc002mkk.1_Missense_Mutation_p.G161R	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	529	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GCGCTCACCCCCTTGTCGATG	0.682													3	14					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8660990	8660990	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8660990G>A	uc002mkj.1	-	11	1578	c.1304C>T	c.(1303-1305)TCC>TTC	p.S435F	ADAMTS10_uc002mkk.1_Missense_Mutation_p.S67F	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	435	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						ACGGCTGCAGGATGACCACAC	0.597													51	97					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8670542	8670542	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8670542G>A	uc002mkj.1	-	3	328	c.54C>T	c.(52-54)CTC>CTT	p.L18L	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	18					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CCTCGAACATGAGGCCCAGCC	0.657													10	18					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8807884	8807884	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8807884G>A	uc002mkl.2	-	1	1289	c.1168C>T	c.(1168-1170)CTG>TTG	p.L390L		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	390						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						AAGGCGCGCAGGGAGGCCAGG	0.647													22	50					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8807901	8807902	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8807901_8807902CC>TT	uc002mkl.2	-	1	1271_1272	c.1150_1151GG>AA	c.(1150-1152)GGC>AAC	p.G384N		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	384						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CAGGATGGAGCCCCCGATCCAT	0.649													14	44					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8808219	8808219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8808219C>T	uc002mkl.2	-	1	954	c.833G>A	c.(832-834)CGG>CAG	p.R278Q		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	278						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CTTCAGAGTCCGCTTGTACTC	0.627													15	46					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8808591	8808591	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8808591C>T	uc002mkl.2	-	1	582	c.461G>A	c.(460-462)AGC>AAC	p.S154N		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	154						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						GGTGGCCGGGCTGAAGGGTGG	0.672													20	56					0	0	1	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841548	8841548	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8841548C>T	uc010xkg.1	+	1	158	c.158C>T	c.(157-159)TCC>TTC	p.S53F		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						CGTGTGGACTCCCGGCTCCAT	0.547													44	114					0	0	1	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841655	8841655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8841655G>A	uc010xkg.1	+	1	265	c.265G>A	c.(265-267)GAA>AAA	p.E89K		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						TCTGCGGGGAGAAGGTGCCAC	0.547													26	63					0	0	1	0	0
ZNF558	148156	broad.mit.edu	37	19	8922431	8922431	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8922431G>A	uc002mkn.1	-	6	965	c.735C>T	c.(733-735)TTC>TTT	p.F245F	ZNF558_uc010xkh.1_Silent_p.F174F|ZNF558_uc010dwg.1_Silent_p.F245F	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	245	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						AACTGGTGCGGAAAACGTGAA	0.443													29	52					0	0	1	0	0
ZNF558	148156	broad.mit.edu	37	19	8931968	8931968	+	Silent	SNP	G	A	A	rs143685735	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8931968G>A	uc002mkn.1	-	3	365	c.135C>T	c.(133-135)TTC>TTT	p.F45F	ZNF558_uc010xkh.1_5'UTR|ZNF558_uc010dwg.1_Silent_p.F45F	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	45	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						CCACATCCTCGAAGGTTACCA	0.587													53	97					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8971824	8971824	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8971824C>T	uc002mkp.2	-	78	42972	c.42768G>A	c.(42766-42768)ACG>ACA	p.T14256T	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.T1056T|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGGAGTCCATCCTAGGGACAG	0.507													5	9					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8976750	8976750	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8976750G>A	uc002mkp.2	-	73	42520	c.42316C>T	c.(42316-42318)CTT>TTT	p.L14106F	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.L906F|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	14137	SEA 14.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGTGCTGAAGGACCCCCTCG	0.552													11	33					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8987264	8987264	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8987264C>T	uc002mkp.2	-	68	42027	c.41823G>A	c.(41821-41823)ATG>ATA	p.M13941I	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.M758I|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13966	Extracellular (Potential).|SEA 13.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGGGTTGGCCCATGTCCGCCA	0.602													9	41					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8993436	8993436	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8993436G>A	uc002mkp.2	-	66	41857	c.41653C>T	c.(41653-41655)CTG>TTG	p.L13885L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.L702L|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13888	Extracellular (Potential).|SEA 12.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGTGGGTCAGCTGGCTCAGC	0.592													19	216					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8997177	8997177	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:8997177G>A	uc002mkp.2	-	60	41223	c.41019C>T	c.(41017-41019)TCC>TCT	p.S13673S	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.S490S|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTTGAACAGGGACCTGAGCT	0.587													25	67					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9000453	9000453	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9000453G>A	uc002mkp.2	-	54	40735	c.40531C>T	c.(40531-40533)CTT>TTT	p.L13511F	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.L328F|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13513	SEA 10.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGACCCTGAAGGACTCTCTCC	0.488													21	75					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9002672	9002672	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9002672G>A	uc002mkp.2	-	51	40348	c.40144C>T	c.(40144-40146)CCT>TCT	p.P13382S	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.P199S|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13384	Extracellular (Potential).|SEA 9.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCTTCTCAGGCCTAGGGAGG	0.547													18	60					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9009273	9009273	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9009273G>A	uc002mkp.2	-	40	39404	c.39200C>T	c.(39199-39201)TCT>TTT	p.S13067F	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCACCTGAGAGAGATCAGTCT	0.507													24	72					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9009648	9009648	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9009648C>T	uc002mkp.2	-	39	39282	c.39078G>A	c.(39076-39078)GAG>GAA	p.E13026E	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13028	Extracellular (Potential).|SEA 7.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACGCATGTCCTCCCCATACT	0.542													57	124					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9009703	9009703	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9009703G>A	uc002mkp.2	-	39	39227	c.39023C>T	c.(39022-39024)CCT>CTT	p.P13008L	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13010	Extracellular (Potential).|SEA 7.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACCAGGAGAGGAACAGCTGC	0.453													37	111					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9014585	9014585	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9014585C>T	uc002mkp.2	-	31	38594	c.38390G>A	c.(38389-38391)GGC>GAC	p.G12797D	MUC16_uc010xki.1_5'Flank	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12799	SEA 5.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCTTTGATGCCATTGGTCAG	0.557													47	181					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9014622	9014622	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9014622C>T	uc002mkp.2	-	31	38557	c.38353G>A	c.(38353-38355)GAG>AAG	p.E12785K	MUC16_uc010xki.1_5'Flank	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12787	SEA 5.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TATAGCTGCTCCCTGTCCACT	0.572													32	113					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9014636	9014636	+	Missense_Mutation	SNP	G	A	A	rs34857031		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9014636G>A	uc002mkp.2	-	31	38543	c.38339C>T	c.(38338-38340)CCT>CTT	p.P12780L	MUC16_uc010xki.1_5'Flank	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12782	SEA 5.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCCACTCCAGGGCTTTTGGG	0.562													27	92					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9017436	9017436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9017436C>T	uc002mkp.2	-	26	38092	c.37888G>A	c.(37888-37890)GAG>AAG	p.E12630K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12632	SEA 4.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TATAGCTGCTCCCTGTCCACT	0.582													17	180					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9017450	9017450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9017450G>A	uc002mkp.2	-	26	38078	c.37874C>T	c.(37873-37875)CCT>CTT	p.P12625L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12627	SEA 4.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCCACTCCAGGGCTTTTGGG	0.572													11	160					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9018484	9018484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9018484G>A	uc002mkp.2	-	24	37894	c.37690C>T	c.(37690-37692)CCT>TCT	p.P12564S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12566	SEA 4.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGAGCCAGGGCGATGCATG	0.542													49	151					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9021059	9021059	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9021059C>T	uc002mkp.2	-	19	37468	c.37264G>A	c.(37264-37266)GGT>AGT	p.G12422S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12424	Extracellular (Potential).|SEA 3.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCACCAGACCCTGCAGGACC	0.547													29	129					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9028347	9028347	+	Missense_Mutation	SNP	G	A	A	rs150243586	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9028347G>A	uc002mkp.2	-	11	36649	c.36445C>T	c.(36445-36447)CGC>TGC	p.R12149C		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12151	SEA 1.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGTCAGGGCGATGTGTGCAG	0.557													48	120					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9045590	9045590	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9045590G>A	uc002mkp.2	-	5	36245	c.36041C>T	c.(36040-36042)GCC>GTC	p.A12014V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12016	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTCTCAGAGGCCAAGGTGGA	0.348													5	10					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9046410	9046410	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9046410C>T	uc002mkp.2	-	5	35425	c.35221G>A	c.(35221-35223)GAG>AAG	p.E11741K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11743	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCACCATCTCTGGTGCACCA	0.488													35	95					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9046907	9046907	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9046907G>A	uc002mkp.2	-	5	34928	c.34724C>T	c.(34723-34725)GCC>GTC	p.A11575V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGCCACGTGGCTGTAGTCTC	0.517													8	22					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9047750	9047750	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9047750G>A	uc002mkp.2	-	5	34085	c.33881C>T	c.(33880-33882)TCT>TTT	p.S11294F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11296	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGACTGTAGAAGGCATAGT	0.473													9	26					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9047864	9047864	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9047864G>A	uc002mkp.2	-	5	33971	c.33767C>T	c.(33766-33768)TCC>TTC	p.S11256F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11258	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCACCAGTGGAGACAGTCAA	0.468													3	22					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9048259	9048259	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9048259C>T	uc002mkp.2	-	5	33576	c.33372G>A	c.(33370-33372)GAG>GAA	p.E11124E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11126	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGGTGTGGTCTCTGGCTCAC	0.512													30	73					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9048826	9048826	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9048826G>A	uc002mkp.2	-	5	33009	c.32805C>T	c.(32803-32805)ACC>ACT	p.T10935T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10937	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGACCAGAGAGGTCACCACTC	0.498													45	89					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049049	9049049	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9049049G>A	uc002mkp.2	-	5	32786	c.32582C>T	c.(32581-32583)TCC>TTC	p.S10861F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10863	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCTGAACTGGATTCTGCCCC	0.483													37	97					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049182	9049182	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9049182C>T	uc002mkp.2	-	5	32653	c.32449G>A	c.(32449-32451)GAA>AAA	p.E10817K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10819	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAGCTGGTTCACCAGGGGAG	0.483													61	123					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049518	9049518	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9049518C>T	uc002mkp.2	-	5	32317	c.32113G>A	c.(32113-32115)GAA>AAA	p.E10705K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10707	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCATCTGATTCATGATGAGAA	0.473													16	255					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049948	9049948	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9049948G>A	uc002mkp.2	-	5	31887	c.31683C>T	c.(31681-31683)TTC>TTT	p.F10561F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATTCTCTATTGAAAACAGATG	0.483													50	116					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9056223	9056224	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9056223_9056224CC>TT	uc002mkp.2	-	3	31426_31427	c.31222_31223GG>AA	c.(31222-31224)GGA>AAA	p.G10408K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10410	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTCACTGTTCCCAGCTCAACG	0.475													65	182					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9056435	9056435	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9056435G>A	uc002mkp.2	-	3	31215	c.31011C>T	c.(31009-31011)TTC>TTT	p.F10337F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10339	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGTGGTAGTGAAGGTTGAAG	0.522													28	69					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9056563	9056563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9056563G>A	uc002mkp.2	-	3	31087	c.30883C>T	c.(30883-30885)CCA>TCA	p.P10295S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10297	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGGCTCGTGGAACTCCAGTG	0.522													21	79					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9057615	9057615	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9057615G>A	uc002mkp.2	-	3	30035	c.29831C>T	c.(29830-29832)TCC>TTC	p.S9944F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9946	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATGGATGAGGAAGAGAGCCT	0.453													85	231					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9057713	9057713	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9057713C>T	uc002mkp.2	-	3	29937	c.29733G>A	c.(29731-29733)ATG>ATA	p.M9911I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9913	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGATTTCTGTCATGGAGACTT	0.468													12	167					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9057754	9057754	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9057754G>A	uc002mkp.2	-	3	29896	c.29692C>T	c.(29692-29694)CTT>TTT	p.L9898F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9900	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTCCATAAAGGACTGCACTT	0.468													28	89					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9057787	9057787	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9057787C>T	uc002mkp.2	-	3	29863	c.29659G>A	c.(29659-29661)GAG>AAG	p.E9887K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9889	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGTGGTCTCTTCAGAGGTG	0.453													35	71					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9057962	9057962	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9057962G>A	uc002mkp.2	-	3	29688	c.29484C>T	c.(29482-29484)TCC>TCT	p.S9828S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9830	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTAGGACAGAGGAATGAGATT	0.458													26	67					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9058360	9058360	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9058360C>T	uc002mkp.2	-	3	29290	c.29086G>A	c.(29086-29088)GGA>AGA	p.G9696R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9698	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGAAAGTCCTTGAGACATA	0.493													17	54					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9058581	9058581	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9058581G>A	uc002mkp.2	-	3	29069	c.28865C>T	c.(28864-28866)CCC>CTC	p.P9622L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9624	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGCTAGAGGGCATAACTTC	0.522													20	53					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9058656	9058656	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9058656G>A	uc002mkp.2	-	3	28994	c.28790C>T	c.(28789-28791)TCC>TTC	p.S9597F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9599	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTCTCTGTGGATGAGGTGAT	0.527													15	38					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9059450	9059450	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9059450G>A	uc002mkp.2	-	3	28200	c.27996C>T	c.(27994-27996)TCC>TCT	p.S9332S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9334	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCCTGGGATGGATGTTCTGC	0.498													37	130					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9059860	9059860	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9059860C>T	uc002mkp.2	-	3	27790	c.27586G>A	c.(27586-27588)GAA>AAA	p.E9196K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9198	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAACTGGTTTCAGGTTCTGAG	0.493													39	75					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060569	9060569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9060569G>A	uc002mkp.2	-	3	27081	c.26877C>T	c.(26875-26877)CTC>CTT	p.L8959L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8961	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGGCTCTGGGAGGCCTGGAT	0.463													52	144					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060664	9060664	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9060664C>T	uc002mkp.2	-	3	26986	c.26782G>A	c.(26782-26784)GAG>AAG	p.E8928K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8930	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCTCTGTCTCCATGGTGGCT	0.488													63	184					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060837	9060837	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9060837G>A	uc002mkp.2	-	3	26813	c.26609C>T	c.(26608-26610)TCC>TTC	p.S8870F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8872	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGATGGTGTGGAATAAAGTGG	0.502													38	83					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9061005	9061005	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9061005C>T	uc002mkp.2	-	3	26645	c.26441G>A	c.(26440-26442)GGA>GAA	p.G8814E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8816	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGTGAGTTCCTGGCCAGGA	0.542													37	89					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9061161	9061161	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9061161G>A	uc002mkp.2	-	3	26489	c.26285C>T	c.(26284-26286)TCA>TTA	p.S8762L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8764	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATTTCTGGTGATATTGTGGA	0.502													20	80					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9061180	9061180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9061180G>A	uc002mkp.2	-	3	26470	c.26266C>T	c.(26266-26268)CCT>TCT	p.P8756S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8758	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATTGAGCAGGACCTGGGGTG	0.498													20	79					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9061487	9061487	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9061487C>T	uc002mkp.2	-	3	26163	c.25959G>A	c.(25957-25959)GTG>GTA	p.V8653V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8655	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTTATAAATCACAGTCCCTA	0.448													21	58					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9061525	9061525	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9061525G>A	uc002mkp.2	-	3	26125	c.25921C>T	c.(25921-25923)CCC>TCC	p.P8641S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8643	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTGAGGAGGGATGAATTTTC	0.428													24	62					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062045	9062045	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9062045G>A	uc002mkp.2	-	3	25605	c.25401C>T	c.(25399-25401)TTC>TTT	p.F8467F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8469	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGATATGGTGAACTGATCAG	0.493													48	185					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062075	9062075	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9062075C>T	uc002mkp.2	-	3	25575	c.25371G>A	c.(25369-25371)AGG>AGA	p.R8457R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8459	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGATGTTCCCCTAGAGGATA	0.512													39	156					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062169	9062169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9062169C>T	uc002mkp.2	-	3	25481	c.25277G>A	c.(25276-25278)AGG>AAG	p.R8426K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8428	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGCTGATCCTCTCAGAGCT	0.507													39	70					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062500	9062500	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9062500C>T	uc002mkp.2	-	3	25150	c.24946G>A	c.(24946-24948)GAA>AAA	p.E8316K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8318	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTCCAGGTTCTCTGCTTATG	0.488													43	88					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9063345	9063345	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9063345G>A	uc002mkp.2	-	3	24305	c.24101C>T	c.(24100-24102)TCA>TTA	p.S8034L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8036	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TATTTCAACTGAGGTGCTGCT	0.468													38	86					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9063593	9063593	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9063593C>T	uc002mkp.2	-	3	24057	c.23853G>A	c.(23851-23853)AGG>AGA	p.R7951R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7953	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGGACCCCTCCTCATAAGAG	0.463													7	63					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9063965	9063965	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9063965G>A	uc002mkp.2	-	3	23685	c.23481C>T	c.(23479-23481)TCC>TCT	p.S7827S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7829	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGTCAGGGAGGAAGCTAGCT	0.542													24	59					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064290	9064290	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9064290G>A	uc002mkp.2	-	3	23360	c.23156C>T	c.(23155-23157)TCA>TTA	p.S7719L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7721	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGAGAAGTGAAGTCACAGG	0.547													34	70					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064299	9064299	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9064299G>A	uc002mkp.2	-	3	23351	c.23147C>T	c.(23146-23148)CCT>CTT	p.P7716L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7718	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAAGTCACAGGAAGGGGAGA	0.547													14	77					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064305	9064305	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9064305G>A	uc002mkp.2	-	3	23345	c.23141C>T	c.(23140-23142)CCC>CTC	p.P7714L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7716	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACAGGAAGGGGAGAGGGGGG	0.537													29	59					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064619	9064619	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9064619G>A	uc002mkp.2	-	3	23031	c.22827C>T	c.(22825-22827)GCC>GCT	p.A7609A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7611	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGACAGAGGAGGCAGAAATCC	0.478													22	65					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064667	9064667	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9064667G>A	uc002mkp.2	-	3	22983	c.22779C>T	c.(22777-22779)TCC>TCT	p.S7593S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7595	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGACATTGTGGACTGCTCAG	0.488													35	80					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064856	9064856	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9064856C>T	uc002mkp.2	-	3	22794	c.22590G>A	c.(22588-22590)AGG>AGA	p.R7530R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7532	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTGAATTTTCCTAGTGTTAG	0.473													26	70					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9065396	9065396	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9065396G>A	uc002mkp.2	-	3	22254	c.22050C>T	c.(22048-22050)TCC>TCT	p.S7350S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7352	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTATTACCAAGGAGGGAGTGG	0.488													16	45					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9065888	9065888	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9065888C>T	uc002mkp.2	-	3	21762	c.21558G>A	c.(21556-21558)GTG>GTA	p.V7186V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7188	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGGAATCTCCACATTGGACG	0.507													14	147					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9066331	9066331	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9066331A>T	uc002mkp.2	-	3	21319	c.21115T>A	c.(21115-21117)TCT>ACT	p.S7039T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7041	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGAGGTAGACCCAGAAGGA	0.483													52	140					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9066520	9066520	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9066520G>A	uc002mkp.2	-	3	21130	c.20926C>T	c.(20926-20928)CCC>TCC	p.P6976S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6978	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTACCAGTGGGGACTTCTGAA	0.483													59	112					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067224	9067224	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9067224G>A	uc002mkp.2	-	3	20426	c.20222C>T	c.(20221-20223)CCT>CTT	p.P6741L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6743	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCAAGAGGAGGACCTGTTCG	0.502													68	200					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067464	9067464	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9067464C>T	uc002mkp.2	-	3	20186	c.19982G>A	c.(19981-19983)GGA>GAA	p.G6661E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6663	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGCTGGTTCCCTTCAGCCC	0.512													27	63					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067484	9067484	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9067484G>A	uc002mkp.2	-	3	20166	c.19962C>T	c.(19960-19962)TCC>TCT	p.S6654S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6656	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATGAGCCAGGGAGAATGTTG	0.502													33	71					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067623	9067623	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9067623G>A	uc002mkp.2	-	3	20027	c.19823C>T	c.(19822-19824)TCG>TTG	p.S6608L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6610	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGGACAGACGAATAAGATTC	0.443													18	214					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067679	9067679	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9067679G>A	uc002mkp.2	-	3	19971	c.19767C>T	c.(19765-19767)TCC>TCT	p.S6589S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6591	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTATGTTTGTGGAAGGATACA	0.453													48	111					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9068061	9068061	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9068061C>T	uc002mkp.2	-	3	19589	c.19385G>A	c.(19384-19386)TGG>TAG	p.W6462*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6464	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGATGTGTCCCAGGTAAGGGT	0.483													54	137					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9069180	9069180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9069180G>A	uc002mkp.2	-	3	18470	c.18266C>T	c.(18265-18267)TCA>TTA	p.S6089L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6091	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCTGTAGTTGAGTTCATCAC	0.488													15	30					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9069366	9069366	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9069366G>A	uc002mkp.2	-	3	18284	c.18080C>T	c.(18079-18081)TCC>TTC	p.S6027F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6029	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGACAGAGGAATGTAGTTT	0.453													81	154					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9069622	9069622	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9069622G>A	uc002mkp.2	-	3	18028	c.17824C>T	c.(17824-17826)CTT>TTT	p.L5942F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5944	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCGGAATAAAGAGATGAATGT	0.502													15	48					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9069754	9069754	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9069754G>A	uc002mkp.2	-	3	17896	c.17692C>T	c.(17692-17694)CCA>TCA	p.P5898S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5900	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGAGTGTGGAAATCTCTGA	0.517													25	92					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9069821	9069821	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9069821G>A	uc002mkp.2	-	3	17829	c.17625C>T	c.(17623-17625)ACC>ACT	p.T5875T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5877	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAGGGTAAGGGTAGCCTGTG	0.493													36	94					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9070072	9070073	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9070072_9070073CC>TT	uc002mkp.2	-	3	17577_17578	c.17373_17374GG>AA	c.(17371-17376)GAGGAG>GAAAAG	p.E5792K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5794	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTTGATCTCCTCAGACGTCC	0.46													25	51					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9070255	9070255	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9070255C>T	uc002mkp.2	-	3	17395	c.17191G>A	c.(17191-17193)GAA>AAA	p.E5731K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5733	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATTGTGATTCATGTCCAGAA	0.488													25	72					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9070360	9070360	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9070360C>T	uc002mkp.2	-	3	17290	c.17086G>A	c.(17086-17088)GAG>AAG	p.E5696K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5698	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCAGTCTCTCCTGTGTGGGG	0.502													20	55					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9070509	9070509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9070509G>A	uc002mkp.2	-	3	17141	c.16937C>T	c.(16936-16938)TCC>TTC	p.S5646F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5648	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGATGTGGAGGAAACAGGAGA	0.517													12	21					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9070533	9070533	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9070533G>A	uc002mkp.2	-	3	17117	c.16913C>T	c.(16912-16914)TCC>TTC	p.S5638F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5640	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGATGTCATGGAAGGTGACAT	0.527													15	16					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9071252	9071252	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9071252G>A	uc002mkp.2	-	3	16398	c.16194C>T	c.(16192-16194)ATC>ATT	p.I5398I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5400	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTCATGAGTGATGCTGCTCA	0.507													124	279					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9071513	9071513	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9071513G>A	uc002mkp.2	-	3	16137	c.15933C>T	c.(15931-15933)ACC>ACT	p.T5311T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5313	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCATGAGAGTGGTCACCTCTG	0.532													14	71					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9071765	9071765	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9071765G>A	uc002mkp.2	-	3	15885	c.15681C>T	c.(15679-15681)GTC>GTT	p.V5227V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5229	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGAAGAGTTGACCCCTGTAC	0.498													19	128					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9071953	9071953	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9071953G>A	uc002mkp.2	-	3	15697	c.15493C>T	c.(15493-15495)CCT>TCT	p.P5165S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5167	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATGTGGAAGGAGCTGGATCT	0.488													57	195					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9072087	9072087	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9072087G>A	uc002mkp.2	-	3	15563	c.15359C>T	c.(15358-15360)TCT>TTT	p.S5120F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5122	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGTTTATAGAAGGAAAAAT	0.443													28	69					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9072128	9072128	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9072128G>A	uc002mkp.2	-	3	15522	c.15318C>T	c.(15316-15318)GCC>GCT	p.A5106A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5108	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTTAGAAGTGGCCAGTATCT	0.428													45	96					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9072407	9072407	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9072407C>T	uc002mkp.2	-	3	15243	c.15039G>A	c.(15037-15039)TTG>TTA	p.L5013L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5015	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTCACATCCAATTGTGAAA	0.483													21	58					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9072414	9072414	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9072414G>A	uc002mkp.2	-	3	15236	c.15032C>T	c.(15031-15033)TCA>TTA	p.S5011L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5013	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCCAATTGTGAAAATCCATG	0.483													9	71					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9073561	9073562	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9073561_9073562CC>TT	uc002mkp.2	-	3	14088_14089	c.13884_13885GG>AA	c.(13882-13887)GGGGCT>GGAACT	p.A4629T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4631	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAGTAATAGCCCCCACAGACA	0.46													18	62					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9073656	9073656	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9073656G>A	uc002mkp.2	-	3	13994	c.13790C>T	c.(13789-13791)TCC>TTC	p.S4597F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4599	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTCAGGGAGGATGTTGGCTC	0.512													19	36					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9073721	9073721	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9073721C>T	uc002mkp.2	-	3	13929	c.13725G>A	c.(13723-13725)GGG>GGA	p.G4575G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4577	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAAGAGCGTCCCCCATGCTGG	0.532													15	45					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9074222	9074222	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9074222G>A	uc002mkp.2	-	3	13428	c.13224C>T	c.(13222-13224)ACC>ACT	p.T4408T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4410	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTAAGGCATGGTTGATGTGT	0.473													38	136					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9074263	9074263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9074263C>T	uc002mkp.2	-	3	13387	c.13183G>A	c.(13183-13185)GGA>AGA	p.G4395R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4397	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTGCAGCTCCAGTAGGACCT	0.463													45	101					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9074867	9074867	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9074867G>A	uc002mkp.2	-	3	12783	c.12579C>T	c.(12577-12579)TTC>TTT	p.F4193F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4195	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTCAGACAAGAAAACTGAGG	0.507													20	59					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9074991	9074991	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9074991G>A	uc002mkp.2	-	3	12659	c.12455C>T	c.(12454-12456)TCT>TTT	p.S4152F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4154	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTTCCACAGAGGGAGGGCT	0.498													8	100					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075173	9075173	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9075173C>T	uc002mkp.2	-	3	12477	c.12273G>A	c.(12271-12273)ATG>ATA	p.M4091I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4093	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGCAAGGATCATTCCTCCAG	0.527													27	61					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075287	9075287	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9075287G>A	uc002mkp.2	-	3	12363	c.12159C>T	c.(12157-12159)TCC>TCT	p.S4053S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4055	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTCTTAGAGGAGGTAATTT	0.502													42	144					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075383	9075383	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9075383G>A	uc002mkp.2	-	3	12267	c.12063C>T	c.(12061-12063)AGC>AGT	p.S4021S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4023	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCATGTAAGGGCTGACGTCCC	0.463													21	70					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075484	9075484	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9075484C>T	uc002mkp.2	-	3	12166	c.11962G>A	c.(11962-11964)GAA>AAA	p.E3988K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3990	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATTGCTTGTTCCCTGGTGGAG	0.488													15	35					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9076249	9076250	+	Silent	DNP	GA	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9076249_9076250GA>AT	uc002mkp.2	-	3	11400_11401	c.11196_11197TC>AT	c.(11194-11199)TCTCTG>TCATTG	p.3732_3733SL>SL		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3733_3734	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAGTGGACAGAGAATCAAACA	0.5													17	84					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9076695	9076695	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9076695G>A	uc002mkp.2	-	3	10955	c.10751C>T	c.(10750-10752)TCT>TTT	p.S3584F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3585	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCTGTGGAAGACCAGGTGGA	0.493													27	69					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9077159	9077159	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9077159C>T	uc002mkp.2	-	3	10491	c.10287G>A	c.(10285-10287)TGG>TGA	p.W3429*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3430	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGATCTGACCAAGAACTAG	0.458													52	103					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9077764	9077764	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9077764G>A	uc002mkp.2	-	3	9886	c.9682C>T	c.(9682-9684)CCT>TCT	p.P3228S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3229	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTTCCAAGGAGAATTTCTC	0.522													41	139					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9082364	9082364	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9082364G>A	uc002mkp.2	-	1	9655	c.9451C>T	c.(9451-9453)CCT>TCT	p.P3151S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3152	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTTGGCAGGAACTGAAATA	0.443													24	66					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9082505	9082505	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9082505C>T	uc002mkp.2	-	1	9514	c.9310G>A	c.(9310-9312)GAG>AAG	p.E3104K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3105	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTGTTCCCTCTTCTTCTGCA	0.488													82	212					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9082626	9082626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9082626C>T	uc002mkp.2	-	1	9393	c.9189G>A	c.(9187-9189)AGG>AGA	p.R3063R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3064	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTTGGGCTGCCTTGCCATGG	0.483													44	129					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9082977	9082977	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9082977C>T	uc002mkp.2	-	1	9042	c.8838G>A	c.(8836-8838)AAG>AAA	p.K2946K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2947	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACTTATGGCCTTTGTGGAAG	0.498													24	66					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9083067	9083067	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9083067G>A	uc002mkp.2	-	1	8952	c.8748C>T	c.(8746-8748)ACC>ACT	p.T2916T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2917	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTCTGGAATGGTGTTCAGGG	0.483													17	45					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9083611	9083611	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9083611G>A	uc002mkp.2	-	1	8408	c.8204C>T	c.(8203-8205)CCA>CTA	p.P2735L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2735	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTATTCCGTGGAGCAACAAT	0.463													37	84					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9083644	9083644	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9083644G>A	uc002mkp.2	-	1	8375	c.8171C>T	c.(8170-8172)CCT>CTT	p.P2724L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2724	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGGAAGAAGGATGGAGTGG	0.468													28	90					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9084263	9084263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9084263C>T	uc002mkp.2	-	1	7756	c.7552G>A	c.(7552-7554)GGC>AGC	p.G2518S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2518	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGAGAAAGCCCATGGCAGGT	0.512													13	33					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9084500	9084500	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9084500C>T	uc002mkp.2	-	1	7519	c.7315G>A	c.(7315-7317)GGG>AGG	p.G2439R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2439	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGGAGCCCCCATCAAGAGAA	0.502													4	42					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9084665	9084665	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9084665C>T	uc002mkp.2	-	1	7354	c.7150G>A	c.(7150-7152)GAT>AAT	p.D2384N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2384	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTAGTGACATCCATAGTTGAA	0.473													16	27					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9085498	9085498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9085498G>A	uc002mkp.2	-	1	6521	c.6317C>T	c.(6316-6318)CCA>CTA	p.P2106L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2106	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCTGTTTCTGGATTTCTTTG	0.498													50	152					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9085504	9085504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9085504C>T	uc002mkp.2	-	1	6515	c.6311G>A	c.(6310-6312)AGA>AAA	p.R2104K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2104	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTGGATTTCTTTGCTTAGC	0.502													50	152					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9085580	9085580	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9085580C>T	uc002mkp.2	-	1	6439	c.6235G>A	c.(6235-6237)GGG>AGG	p.G2079R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2079	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTGAAACCCCAGAATGGCCT	0.473													54	113					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9085734	9085734	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9085734G>A	uc002mkp.2	-	1	6285	c.6081C>T	c.(6079-6081)TCC>TCT	p.S2027S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2027	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATATGGAGAGGATGTGCTGC	0.483													17	71					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9085995	9085995	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9085995G>A	uc002mkp.2	-	1	6024	c.5820C>T	c.(5818-5820)TCC>TCT	p.S1940S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1940	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCACTGGAATGGATGAAAAAG	0.488													12	34					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9086464	9086464	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9086464G>A	uc002mkp.2	-	1	5555	c.5351C>T	c.(5350-5352)TCT>TTT	p.S1784F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1784	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTTGCTGAAGACTTGGAGAT	0.468													25	47					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9086521	9086521	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9086521C>T	uc002mkp.2	-	1	5498	c.5294G>A	c.(5293-5295)GGC>GAC	p.G1765D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1765	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAATGTGCTGCCCCCTATGAA	0.502													6	73					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9086960	9086960	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9086960C>T	uc002mkp.2	-	1	5059	c.4855G>A	c.(4855-4857)GAG>AAG	p.E1619K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1619	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGCCAGTCTCAATCTCTCTG	0.512													56	143					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9087344	9087344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9087344G>A	uc002mkp.2	-	1	4675	c.4471C>T	c.(4471-4473)CCT>TCT	p.P1491S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1491	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGGACATAGGTGGAAAAATA	0.428													18	203					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9087697	9087697	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9087697G>A	uc002mkp.2	-	1	4322	c.4118C>T	c.(4117-4119)TCA>TTA	p.S1373L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1373	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGATTGGGTGAACTTGAGAT	0.468													36	72					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9087887	9087887	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9087887G>A	uc002mkp.2	-	1	4132	c.3928C>T	c.(3928-3930)CCT>TCT	p.P1310S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1310	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTCTCCAGGAGCTGTCATC	0.507													24	65					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9088430	9088430	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9088430G>A	uc002mkp.2	-	1	3589	c.3385C>T	c.(3385-3387)CTG>TTG	p.L1129L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1129	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGGAGTCAGAGCTGAGCTT	0.458													20	55					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9088726	9088726	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9088726G>A	uc002mkp.2	-	1	3293	c.3089C>T	c.(3088-3090)CCA>CTA	p.P1030L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1030	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATAGAGCCTGGGCCATTCGT	0.478													54	116					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9088839	9088839	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9088839G>A	uc002mkp.2	-	1	3180	c.2976C>T	c.(2974-2976)CTC>CTT	p.L992L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	992	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGTAGCAGAGAGAGAAGTGG	0.473													76	221					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9089883	9089883	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9089883C>T	uc002mkp.2	-	1	2136	c.1932G>A	c.(1930-1932)ACG>ACA	p.T644T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	644	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGACACCGTTCGTGGCCAGAG	0.567													34	94					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9089917	9089917	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9089917G>A	uc002mkp.2	-	1	2102	c.1898C>T	c.(1897-1899)TCA>TTA	p.S633L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	633	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTCTCAGATGATGCTGTGGC	0.577													20	80					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9090556	9090556	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9090556G>A	uc002mkp.2	-	1	1463	c.1259C>T	c.(1258-1260)ACC>ATC	p.T420I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	420	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAGTGATGGGTGTTGGTCTC	0.502													21	56					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9090630	9090630	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9090630G>A	uc002mkp.2	-	1	1389	c.1185C>T	c.(1183-1185)ACC>ACT	p.T395T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	395	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCCACCAAGGGTACCTGGAC	0.512													10	44					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9091388	9091388	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9091388C>T	uc002mkp.2	-	1	631	c.427G>A	c.(427-429)GAA>AAA	p.E143K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	143	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAGATGCTTCTTTGGTAAAA	0.488													31	55					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9091556	9091556	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9091556G>A	uc002mkp.2	-	1	463	c.259C>T	c.(259-261)CCT>TCT	p.P87S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	87	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTGACTCAGGGAGAGCAGAG	0.537													40	80					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9091567	9091567	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9091567G>A	uc002mkp.2	-	1	452	c.248C>T	c.(247-249)TCC>TTC	p.S83F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	83	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGAGCAGAGGACATCACCCC	0.532													32	87					0	0	1	0	0
OR1M1	125963	broad.mit.edu	37	19	9204043	9204043	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9204043G>A	uc010xkj.1	+	1	123	c.123G>A	c.(121-123)GGG>GGA	p.G41G		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						TGGTCGTGGGGAACCTGCTCA	0.537													37	100					0	0	1	0	0
OR1M1	125963	broad.mit.edu	37	19	9204289	9204289	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9204289C>T	uc010xkj.1	+	1	369	c.369C>T	c.(367-369)TTC>TTT	p.F123F		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						ATGACCGGTTCGTGGCCATCT	0.552													30	60					0	0	1	0	0
OR1M1	125963	broad.mit.edu	37	19	9204490	9204490	+	Silent	SNP	G	A	A	rs139852545	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9204490G>A	uc010xkj.1	+	1	570	c.570G>A	c.(568-570)ACG>ACA	p.T190T		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						TTTCGTGCACGGACACCTCTG	0.562													48	108					0	0	1	0	0
OR7G2	390882	broad.mit.edu	37	19	9213014	9213014	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9213014C>T	uc010xkk.1	-	1	969	c.969G>A	c.(967-969)AGG>AGA	p.R323R		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTATGAACTTCCTCAAGGTTC	0.443													19	60					0	0	1	0	0
OR7G2	390882	broad.mit.edu	37	19	9213419	9213419	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9213419G>A	uc010xkk.1	-	1	564	c.564C>T	c.(562-564)TCC>TCT	p.S188S		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTGTGCAGAAGGACAGCCTCA	0.493													27	50					0	0	1	0	0
OR7G1	125962	broad.mit.edu	37	19	9225552	9225552	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9225552C>T	uc002mks.1	-	1	888	c.888G>A	c.(886-888)GAG>GAA	p.E296E		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						CTTTCTTCATCTCCTTATTTC	0.413													50	120					0	0	1	0	0
OR7G3	390883	broad.mit.edu	37	19	9237432	9237432	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9237432G>A	uc010xkl.1	-	1	195	c.195C>T	c.(193-195)ATC>ATT	p.I65I		NM_001001958	NP_001001958	Q8NG95	OR7G3_HUMAN	olfactory receptor, family 7, subfamily G,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCAAGGACAGGATAGAGAGGA	0.547													48	95					0	0	1	0	0
ZNF317	57693	broad.mit.edu	37	19	9271434	9271434	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9271434C>T	uc002mku.2	+	7	1388	c.1113C>T	c.(1111-1113)TTC>TTT	p.F371F	ZNF317_uc002mkv.2_Silent_p.F230F|ZNF317_uc002mkw.2_Silent_p.F339F|ZNF317_uc002mkx.2_Silent_p.F286F|ZNF317_uc002mky.2_Silent_p.F254F	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	371	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCAAAGCCTTCCGCTGGAAGT	0.537													9	27					0	0	1	0	0
OR7D2	162998	broad.mit.edu	37	19	9296535	9296535	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9296535C>T	uc002mkz.1	+	1	266	c.78C>T	c.(76-78)TTC>TTT	p.F26F		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	26	Helical; Name=1; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TACAGCCGTTCATATTTGGGC	0.493													29	54					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9324768	9324768	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9324768G>A	uc002mla.1	-	1	746	c.746C>T	c.(745-747)TCC>TTC	p.S249F		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						ATAGAACAAGGAGACCACACA	0.517													24	52					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9324872	9324872	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9324872G>A	uc002mla.1	-	1	642	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGGAGAAGAGGATCCCAGCTA	0.527													25	76					0	0	1	0	0
OR7E24	26648	broad.mit.edu	37	19	9361945	9361945	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9361945C>T	uc002mlb.1	+	1	226	c.226C>T	c.(226-228)CCC>TCC	p.P76S		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	76	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCTCCACACCCCCATGTACTT	0.577													21	76					0	0	1	0	0
OR7E24	26648	broad.mit.edu	37	19	9362178	9362178	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9362178C>T	uc002mlb.1	+	1	459	c.459C>T	c.(457-459)ATC>ATT	p.I153I		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	153	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACCGAATCATCATGAACCCAC	0.443													18	54					0	0	1	0	0
ZNF699	374879	broad.mit.edu	37	19	9408050	9408050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9408050G>A	uc002mlc.1	-	4	392	c.392C>T	c.(391-393)TCC>TTC	p.S131F		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGAGAACCAGGAATCATTCCT	0.363													34	45					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9577519	9577519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9577519G>A	uc002mlp.1	-	10	2314	c.2104C>T	c.(2104-2106)CGC>TGC	p.R702C	ZNF560_uc010dwr.1_Missense_Mutation_p.R596C	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	702					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						GTTTTTAAGCGATCATGAAAG	0.378													60	195					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9577743	9577743	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9577743G>A	uc002mlp.1	-	10	2090	c.1880C>T	c.(1879-1881)CCC>CTC	p.P627L	ZNF560_uc010dwr.1_Missense_Mutation_p.P521L	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	627					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						ATATTCATAGGGCTTATCTCC	0.393													46	120					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9577764	9577764	+	Missense_Mutation	SNP	C	T	T	rs139799240	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9577764C>T	uc002mlp.1	-	10	2069	c.1859G>A	c.(1858-1860)CGA>CAA	p.R620Q	ZNF560_uc010dwr.1_Missense_Mutation_p.R514Q	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	620	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						AGTGTGTCTTCGTAAATGTTT	0.393													46	119					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9577796	9577796	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9577796G>A	uc002mlp.1	-	10	2037	c.1827C>T	c.(1825-1827)TTC>TTT	p.F609F	ZNF560_uc010dwr.1_Silent_p.F503F	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	609	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						AGCGTTCTGTGAAGGCTTTTC	0.423													47	143					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9578102	9578102	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9578102C>T	uc002mlp.1	-	10	1731	c.1521G>A	c.(1519-1521)TTG>TTA	p.L507L	ZNF560_uc010dwr.1_Silent_p.L401L	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	507	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TGTGAGTTCTCAAATGAGCAA	0.408													43	102					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9578782	9578782	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9578782G>A	uc002mlp.1	-	10	1051	c.841C>T	c.(841-843)CAG>TAG	p.Q281*	ZNF560_uc010dwr.1_Nonsense_Mutation_p.Q175*	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	281					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CTCTGGACCTGAACATTTAAA	0.383													40	98					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9581067	9581067	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9581067C>T	uc002mlp.1	-	7	658	c.448_splice	c.e7+1	p.G150_splice	ZNF560_uc010dwr.1_Splice_Site_p.G44_splice	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						GCCAGACTTACCTACTGAGGA	0.438													27	127					0	0	1	0	0
ZNF121	7675	broad.mit.edu	37	19	9677162	9677162	+	Silent	SNP	G	A	A	rs147272207		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9677162G>A	uc010xkp.1	-	4	859	c.627C>T	c.(625-627)TTC>TTT	p.F209F	ZNF121_uc010dwt.2_Silent_p.F209F|ZNF121_uc010xkq.1_Silent_p.F209F	NM_001008727	NP_001008727	P58317	ZN121_HUMAN	zinc finger protein 121	209	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGCGCCCAGCGAAGGCTCTTC	0.418													29	60					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	9801565	9801565	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9801565G>A	uc010xkx.1	-	3	925	c.302C>T	c.(301-303)TCC>TTC	p.S101F						RecName: Full=Zinc finger protein 562;																		TAGGTGTGAGGAATGAGTGAT	0.368													12	19					0	0	1	0	0
FBXL12	54850	broad.mit.edu	37	19	9922101	9922101	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:9922101G>A	uc002mme.2	-	3	694	c.452C>T	c.(451-453)CCC>CTC	p.P151L	FBXL12_uc002mmd.2_Missense_Mutation_p.P98L|FBXL12_uc002mmf.2_Missense_Mutation_p.P98L|FBXL12_uc002mmg.2_Missense_Mutation_p.P98L|FBXL12_uc002mmh.2_Missense_Mutation_p.P98L	NM_017703	NP_060173	Q9NXK8	FXL12_HUMAN	F-box and leucine-rich repeat protein 12	151							protein binding			lung(1)|kidney(1)	2						TTCAAGCAGGGGCAGCACGGT	0.677													24	66					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10071223	10071223	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10071223C>T	uc002mmq.1	-	67	5188	c.5102G>A	c.(5101-5103)GGA>GAA	p.G1701E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1701	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CTTCGTCTGTCCTTTCCGGAG	0.577													40	103					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10073501	10073501	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10073501C>T	uc002mmq.1	-	65	4931	c.4845G>A	c.(4843-4845)GGG>GGA	p.G1615G		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1615	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TCACCTTCTTCCCTCGACGGA	0.537													11	15					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10077009	10077009	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10077009G>A	uc002mmq.1	-	64	4849	c.4763C>T	c.(4762-4764)CCC>CTC	p.P1588L		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1588	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CTTCTTGTCGGGATAGAGGCA	0.592													20	43					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10079083	10079083	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10079083G>A	uc002mmq.1	-	59	4378	c.4292C>T	c.(4291-4293)CCC>CTC	p.P1431L		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1431	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGGACCAGGGGGTCCCTGCAC	0.597													72	172					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10080036	10080036	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10080036G>A	uc002mmq.1	-	57	4227	c.4141C>T	c.(4141-4143)CCT>TCT	p.P1381S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1381	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			AGGGGGCCAGGAGGGCCCATC	0.597													18	47					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10080327	10080327	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10080327C>T	uc002mmq.1	-	56	4108	c.4022G>A	c.(4021-4023)AGG>AAG	p.R1341K		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1341	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TGGACCCGTCCTCCCTGGGGG	0.682													6	17					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10083645	10083645	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10083645G>A	uc002mmq.1	-	51	3810	c.3724C>T	c.(3724-3726)CCC>TCC	p.P1242S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1242	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TTGCCTGGGGGTCCAGCAGCT	0.612													5	25					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10083692	10083692	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10083692C>T	uc002mmq.1	-	51	3763	c.3677G>A	c.(3676-3678)GGA>GAA	p.G1226E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1226	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			ACCAATGTCTCCCTTGGGCCC	0.577													8	16					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10084865	10084865	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10084865G>A	uc002mmq.1	-	47	3572	c.3486C>T	c.(3484-3486)GTC>GTT	p.V1162V		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1162	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CGACGTCTCCGACCTCCCCTT	0.592													26	52					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10088273	10088273	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10088273G>A	uc002mmq.1	-	42	3209	c.3123C>T	c.(3121-3123)TCC>TCT	p.S1041S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1041	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CACTTACCCGGGACCCCTTCT	0.642													6	26					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10089637	10089637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10089637C>T	uc002mmq.1	-	40	2980	c.2894G>A	c.(2893-2895)GGA>GAA	p.G965E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	965	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCCAAGGGGTCCTGGTGGTCC	0.637													5	15					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10089654	10089654	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10089654C>T	uc002mmq.1	-	40	2963	c.2877G>A	c.(2875-2877)GGG>GGA	p.G959G		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	959	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GTCCCAGTTCCCCCTACAGGA	0.622													3	16					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10092766	10092766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10092766C>T	uc002mmq.1	-	32	2521	c.2435G>A	c.(2434-2436)GGA>GAA	p.G812E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	812	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TCCTATGGGTCCCAGGGGACC	0.537													15	45					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10104320	10104320	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10104320C>T	uc002mmq.1	-	18	1756	c.1670G>A	c.(1669-1671)GGG>GAG	p.G557E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	557	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			ACCAGGCAGCCCAGGGAGGCC	0.592													18	58					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10104446	10104446	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10104446C>T	uc002mmq.1	-	17	1710	c.1624G>A	c.(1624-1626)GGG>AGG	p.G542R		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	542	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCAGTGTCCCCTGGGAGGCCC	0.582													41	98					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10104455	10104455	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10104455C>T	uc002mmq.1	-	17	1701	c.1615G>A	c.(1615-1617)GGC>AGC	p.G539S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	539	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCTGGGAGGCCCCGAGCTCCA	0.572													8	125					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10106264	10106264	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10106264T>A	uc002mmq.1	-	16	1649	c.1563A>T	c.(1561-1563)GGA>GGT	p.G521G		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	521	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGCCAGGGGGTCCATGAGGTC	0.507													14	37					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10108085	10108085	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10108085G>A	uc002mmq.1	-	11	1311	c.1225C>T	c.(1225-1227)CCC>TCC	p.P409S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	409	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGGGGGCCGGGAGGGCCTGAG	0.602													9	7					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10114359	10114360	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10114359_10114360GG>AA	uc002mmq.1	-	6	816_817	c.730_731CC>TT	c.(730-732)CCT>TTT	p.P244F		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	244	Nonhelical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CTTCCGCCGAGGACGAGGGGTT	0.579													9	79					0	0	1	0	0
RDH8	50700	broad.mit.edu	37	19	10132058	10132058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10132058C>T	uc002mmr.2	+	5	913	c.664C>T	c.(664-666)CCA>TCA	p.P222S		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	222					estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	CCTCTATCTCCCAGCCTCCAG	0.587													33	103					0	0	1	0	0
C3P1	388503	broad.mit.edu	37	19	10165979	10165979	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10165979G>A	uc010dwx.1	+	15		c.1842G>A				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						CACCTCCAAGGGGAACCCAGG	0.592													16	61					0	0	1	0	0
DNMT1	1786	broad.mit.edu	37	19	10247785	10247785	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10247785G>A	uc002mng.2	-	36	4597	c.4417C>T	c.(4417-4419)CGT>TGT	p.R1473C	DNMT1_uc002mne.2_RNA|DNMT1_uc002mnf.2_Missense_Mutation_p.R397C|DNMT1_uc010xlc.1_Missense_Mutation_p.R1489C|DNMT1_uc002mnh.2_Missense_Mutation_p.R1368C|DNMT1_uc010xld.1_Missense_Mutation_p.R1473C	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	1473	Catalytic.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	CAGACCCCACGGAGGGCCCCA	0.647													7	10					0	0	1	0	0
DNMT1	1786	broad.mit.edu	37	19	10265056	10265056	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10265056G>A	uc002mng.2	-	21	2064	c.1884C>T	c.(1882-1884)TTC>TTT	p.F628F	DNMT1_uc010xlc.1_Silent_p.F644F|DNMT1_uc002mnh.2_Silent_p.F523F|DNMT1_uc010xld.1_Silent_p.F628F	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	628					chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	AGAAAGTATCGAAGATCTGGT	0.562													36	156					0	0	1	0	0
DNMT1	1786	broad.mit.edu	37	19	10267156	10267156	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10267156G>A	uc002mng.2	-	17	1442	c.1262C>T	c.(1261-1263)CCC>CTC	p.P421L	DNMT1_uc010xlc.1_Missense_Mutation_p.P437L|DNMT1_uc002mnh.2_Missense_Mutation_p.P316L|DNMT1_uc010xld.1_Missense_Mutation_p.P421L	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	421	DNA replication foci-targeting sequence (By similarity).|Homodimerization.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	GGTGTCGATGGGACACAGGTG	0.473													27	49					0	0	1	0	0
MRPL4	51073	broad.mit.edu	37	19	10368915	10368916	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10368915_10368916CC>TT	uc002mnm.2	+	7	617_618	c.463_464CC>TT	c.(463-465)CCC>TTC	p.P155F	MRPL4_uc002mnn.2_Missense_Mutation_p.P155F|MRPL4_uc002mno.2_Missense_Mutation_p.P155F	NM_146387	NP_666499	Q9BYD3	RM04_HUMAN	mitochondrial ribosomal protein L4 isoform a	155					translation	mitochondrion|ribosome	structural constituent of ribosome			ovary(1)	1		Renal(1328;0.0112)	OV - Ovarian serous cystadenocarcinoma(20;1.39e-09)|Epithelial(33;1.99e-06)|all cancers(31;4.81e-06)	Lung(535;0.00705)		TGCCCATGGCCCCCGGGGCCCC	0.639													5	39					0	0	1	0	0
ICAM1	3383	broad.mit.edu	37	19	10395216	10395216	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10395216C>T	uc002mnq.2	+	5	1382	c.1063C>T	c.(1063-1065)CAG>TAG	p.Q355*	ICAM1_uc010xle.1_Nonsense_Mutation_p.Q133*|ICAM4_uc002mnr.1_5'Flank|ICAM4_uc002mns.1_5'Flank|ICAM4_uc002mnt.1_5'Flank	NM_000201	NP_000192	P05362	ICAM1_HUMAN	intercellular adhesion molecule 1 precursor	355	Ig-like C2-type 4.|Extracellular (Potential).				adhesion to symbiont|heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking|positive regulation of cellular extravasation|regulation of immune response|regulation of leukocyte mediated cytotoxicity|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|virion attachment, binding of host cell surface receptor	extracellular space|integral to plasma membrane	integrin binding|transmembrane receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.39e-09)|Epithelial(33;2.81e-06)|all cancers(31;6.56e-06)		Natalizumab(DB00108)|Simvastatin(DB00641)	CCCGAGGGCCCAGCTCCTGCT	0.642													12	95					0	0	1	0	0
ICAM4	3386	broad.mit.edu	37	19	10397994	10397994	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10397994C>T	uc002mns.1	+	1	345	c.306C>T	c.(304-306)CTC>CTT	p.L102L	ICAM4_uc002mnr.1_Silent_p.L102L|ICAM4_uc002mnt.1_Silent_p.L102L|ICAM5_uc002mnu.3_5'Flank	NM_001544	NP_001535	Q14773	ICAM4_HUMAN	intercellular adhesion molecule 4 isoform 1	102	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell adhesion|regulation of immune response	extracellular region|integral to membrane|plasma membrane	integrin binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			ACCAGCTGCTCGACGTGAGGG	0.662													11	19					0	0	1	0	0
ICAM4	3386	broad.mit.edu	37	19	10398444	10398444	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10398444C>T	uc002mns.1	+	2	666	c.627C>T	c.(625-627)ATC>ATT	p.I209I	ICAM4_uc002mnr.1_Silent_p.L184L|ICAM4_uc002mnt.1_Silent_p.I209I|ICAM5_uc002mnu.3_5'Flank	NM_001544	NP_001535	Q14773	ICAM4_HUMAN	intercellular adhesion molecule 4 isoform 1	209	Ig-like C2-type 2.|Extracellular (Potential).				cell-cell adhesion|regulation of immune response	extracellular region|integral to membrane|plasma membrane	integrin binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			AGCCCGTGATCTGCCACGCGC	0.627													9	94					0	0	1	0	0
ICAM5	7087	broad.mit.edu	37	19	10405169	10405169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10405169C>T	uc002mnu.3	+	9	2148	c.2083C>T	c.(2083-2085)CGC>TGC	p.R695C	ICAM5_uc002mnv.3_Missense_Mutation_p.R570C	NM_003259	NP_003250	Q9UMF0	ICAM5_HUMAN	intercellular adhesion molecule 5 precursor	695	Extracellular (Potential).|Ig-like C2-type 8.				cell-cell adhesion	integral to plasma membrane				breast(3)	3			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			CGCCCGGGGTCGCCCTTCCCC	0.677													9	27					0	0	1	0	0
ZGLP1	100125288	broad.mit.edu	37	19	10419190	10419190	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10419190G>A	uc002mnw.3	-	1	1044	c.168C>T	c.(166-168)GCC>GCT	p.A56A	FDX1L_uc002mnx.1_RNA	NM_001103167	NP_001096637	P0C6A0	ZGLP1_HUMAN	GATA like protein-1	56					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGAAGCACAGGGCGGTGACCG	0.667													6	11					0	0	1	0	0
RAVER1	125950	broad.mit.edu	37	19	10434093	10434094	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10434093_10434094GG>AA	uc002moa.2	-	4	1036_1037	c.956_957CC>TT	c.(955-957)CCC>CTT	p.P319L		NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	302						cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			TACTGCGGCCGGGGGGCCCAGG	0.713													4	20					0	0	1	0	0
ICAM3	3385	broad.mit.edu	37	19	10449579	10449579	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10449579G>A	uc002mob.2	-	2	177	c.122C>T	c.(121-123)CCT>CTT	p.P41L	ICAM3_uc010dxd.1_5'UTR|ICAM3_uc010xlf.1_Intron	NM_002162	NP_002153	P32942	ICAM3_HUMAN	intercellular adhesion molecule 3 precursor	41	Extracellular (Potential).				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;6.13e-09)|Epithelial(33;9.69e-06)|all cancers(31;2.05e-05)			AGAGAGCACAGGGTTCTGGGG	0.552													19	63					0	0	1	0	0
TYK2	7297	broad.mit.edu	37	19	10465203	10465203	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10465203G>A	uc002moc.3	-	19	3078	c.2700C>T	c.(2698-2700)ATC>ATT	p.I900I	TYK2_uc010dxe.2_Silent_p.I715I	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	900	Protein kinase 2.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			CCAGATCTCGGATCTTTTTCA	0.557													34	73					0	0	1	0	0
TYK2	7297	broad.mit.edu	37	19	10465272	10465272	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10465272G>A	uc002moc.3	-	19	3009	c.2631C>T	c.(2629-2631)GTC>GTT	p.V877V	TYK2_uc010dxe.2_Silent_p.V692V	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	877					intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			TCACAGTCAAGACGTCAGCAA	0.582													29	62					0	0	1	0	0
TYK2	7297	broad.mit.edu	37	19	10476376	10476376	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10476376G>A	uc002moc.3	-	7	1206	c.828C>T	c.(826-828)CCC>CCT	p.P276P	TYK2_uc010dxe.2_Silent_p.P91P|TYK2_uc002mod.2_Silent_p.P276P	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	276	FERM.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			GGTGGCACACGGGCACACGCT	0.677													8	22					0	0	1	0	0
S1PR5	53637	broad.mit.edu	37	19	10625613	10625613	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10625613G>A	uc002mot.1	-	2	132	c.75C>T	c.(73-75)CTC>CTT	p.L25L	S1PR5_uc002mou.1_Silent_p.L25L	NM_030760	NP_110387	Q9H228	S1PR5_HUMAN	endothelial differentiation, sphingolipid	25	Extracellular (By similarity).					integral to membrane|plasma membrane	lysosphingolipid and lysophosphatidic acid receptor activity			central_nervous_system(1)|pancreas(1)	2						GCGCACCGCGGAGCTTGCCGG	0.692													17	56					0	0	1	0	0
AP1M2	10053	broad.mit.edu	37	19	10685646	10685646	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10685646C>T	uc002mpc.2	-	10	1191	c.1107G>A	c.(1105-1107)GAG>GAA	p.E369E	AP1M2_uc002mpd.2_Silent_p.E371E	NM_005498	NP_005489	Q9Y6Q5	AP1M2_HUMAN	adaptor-related protein complex 1, mu 2 subunit	369	MHD.				cellular membrane organization|post-Golgi vesicle-mediated transport|protein targeting|regulation of defense response to virus by virus|vesicle targeting|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(2)	2			Epithelial(33;1.58e-05)|all cancers(31;6.36e-05)			GGCCCTCCACCTCTTCCTTTT	0.617													4	16					0	0	1	0	0
SLC44A2	57153	broad.mit.edu	37	19	10742306	10742306	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10742306C>T	uc002mpf.2	+	8	646	c.507C>T	c.(505-507)GCC>GCT	p.A169A	SLC44A2_uc002mpe.3_Silent_p.A167A	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	169	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	ATGCAGTGGCCCGGAGATGCT	0.607													12	24					0	0	1	0	0
SLC44A2	57153	broad.mit.edu	37	19	10747052	10747052	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10747052C>T	uc002mpf.2	+	15	1426	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	SLC44A2_uc002mpe.3_Silent_p.F427F|SLC44A2_uc002mpg.1_Silent_p.F149F|SLC44A2_uc002mph.2_5'UTR	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	429	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	GTTGCCAGTTCGCCTTCTACG	0.602													33	67					0	0	1	0	0
ILF3	3609	broad.mit.edu	37	19	10792813	10792813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10792813C>T	uc002mpn.2	+	12	1642	c.1325C>T	c.(1324-1326)TCA>TTA	p.S442L	ILF3_uc002mpm.2_Missense_Mutation_p.S442L|ILF3_uc002mpl.2_Missense_Mutation_p.S442L|ILF3_uc002mpk.2_Missense_Mutation_p.S442L|ILF3_uc010xli.1_Missense_Mutation_p.S40L|ILF3_uc002mpo.2_Missense_Mutation_p.S442L|ILF3_uc002mpp.2_Missense_Mutation_p.S263L	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	442	DRBM 1.				M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			GATGGCAATTCATTCGAGGCC	0.557													7	77					0	0	1	0	0
ILF3	3609	broad.mit.edu	37	19	10798340	10798340	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10798340C>T	uc002mpn.2	+	18	2695	c.2378C>T	c.(2377-2379)CCC>CTC	p.P793L	ILF3_uc002mpo.2_Missense_Mutation_p.P797L|ILF3_uc002mpq.2_Missense_Mutation_p.P96S	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	793	Interaction with PRMT1.				M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			TACAACTCTCCCGGGGGCGGG	0.602													14	44					0	0	1	0	0
QTRT1	81890	broad.mit.edu	37	19	10823277	10823277	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10823277C>T	uc002mpr.2	+	7	859	c.834C>T	c.(832-834)TTC>TTT	p.F278F	DNM2_uc010dxk.2_5'Flank	NM_031209	NP_112486	Q9BXR0	TGT_HUMAN	queuine tRNA-ribosyltransferase 1	278					queuosine biosynthetic process	mitochondrion|nucleus|ribosome	metal ion binding|queuine tRNA-ribosyltransferase activity			skin(1)	1			Epithelial(33;1.55e-05)|all cancers(31;3.42e-05)			GTGACATGTTCGACTGCGTCT	0.637													65	166					0	0	1	0	0
DNM2	1785	broad.mit.edu	37	19	10870427	10870427	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10870427C>T	uc002mps.1	+	2	339	c.175C>T	c.(175-177)CGC>TGC	p.R59C	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Missense_Mutation_p.R59C|DNM2_uc002mpv.1_Missense_Mutation_p.R59C|DNM2_uc002mpu.1_Missense_Mutation_p.R59C|DNM2_uc010dxl.1_Missense_Mutation_p.R59C	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	59					G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			CTTCCTTCCCCGCGGTTCAGG	0.567													47	236					0	0	1	0	0
DNM2	1785	broad.mit.edu	37	19	10893725	10893725	+	Missense_Mutation	SNP	C	T	T	rs145607989	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10893725C>T	uc002mps.1	+	6	942	c.778C>T	c.(778-780)CTC>TTC	p.L260F	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Missense_Mutation_p.L260F|DNM2_uc002mpv.1_Missense_Mutation_p.L260F|DNM2_uc002mpu.1_Missense_Mutation_p.L260F|DNM2_uc010dxl.1_Missense_Mutation_p.L260F|DNM2_uc002mpw.2_5'UTR	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	260					G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			GAAGTTCTTCCTCTCCCACCC	0.587													22	53					0	0	1	0	0
DNM2	1785	broad.mit.edu	37	19	10934538	10934538	+	Missense_Mutation	SNP	C	T	T	rs121909095		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:10934538C>T	uc002mps.1	+	17	2020	c.1856C>T	c.(1855-1857)TCG>TTG	p.S619L	DNM2_uc010dxk.2_Intron|DNM2_uc002mpt.1_Missense_Mutation_p.S619L|DNM2_uc002mpv.1_Missense_Mutation_p.S615L|DNM2_uc002mpu.1_Missense_Mutation_p.S615L|DNM2_uc010dxl.1_Missense_Mutation_p.S619L|DNM2_uc002mpw.2_Missense_Mutation_p.S348L|DNM2_uc002mpx.1_5'UTR	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	619	PH.		S -> L (in ADCNM; severe).|S -> W (in ADCNM; severe).		G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			TGGAAGGCCTCGTTCCTCCGA	0.677													23	60					0	0	1	0	0
C19orf52	90580	broad.mit.edu	37	19	11040106	11040106	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11040106C>T	uc002mqd.1	+	2	586	c.511C>T	c.(511-513)CGC>TGC	p.R171C	YIPF2_uc002mqb.2_5'Flank|YIPF2_uc002mqc.2_5'Flank	NM_138358	NP_612367	Q9BSF4	CS052_HUMAN	hypothetical protein LOC90580	171											0						CTTCGTGGGTCGCTGGTGGGT	0.701													16	21					0	0	1	0	0
LDLR	3949	broad.mit.edu	37	19	11215925	11215925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11215925C>T	uc002mqk.3	+	4	511	c.343C>T	c.(343-345)CGC>TGC	p.R115C	LDLR_uc010xlk.1_Missense_Mutation_p.R115C|LDLR_uc010xll.1_Missense_Mutation_p.R74C|LDLR_uc010xlm.1_Intron|LDLR_uc010xln.1_Intron|LDLR_uc010xlo.1_Intron	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	115	Extracellular (Potential).|LDL-receptor class A 3.				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	GGACGAGTTTCGCTGCCACGA	0.622													66	147					0	0	1	0	0
LDLR	3949	broad.mit.edu	37	19	11216169	11216169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11216169C>T	uc002mqk.3	+	4	755	c.587C>T	c.(586-588)CCC>CTC	p.P196L	LDLR_uc010xlk.1_Missense_Mutation_p.P196L|LDLR_uc010xll.1_Missense_Mutation_p.P155L|LDLR_uc010xlm.1_Missense_Mutation_p.P49L|LDLR_uc010xln.1_Intron|LDLR_uc010xlo.1_Intron	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	196	LDL-receptor class A 5.|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	GACAGTAGCCCCTGCTCGGCC	0.617													26	50					0	0	1	0	0
LDLR	3949	broad.mit.edu	37	19	11218112	11218112	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11218112G>A	uc002mqk.3	+	6	1030	c.862G>A	c.(862-864)GAA>AAA	p.E288K	LDLR_uc010xlk.1_Missense_Mutation_p.E288K|LDLR_uc010xll.1_Missense_Mutation_p.E247K|LDLR_uc010xlm.1_Missense_Mutation_p.E141K|LDLR_uc010xln.1_Missense_Mutation_p.E161K|LDLR_uc010xlo.1_Missense_Mutation_p.E120K	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	288	Extracellular (Potential).|LDL-receptor class A 7.		E -> K (in FH; German patient).		cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	TCACAGCGGCGAATGCATCAC	0.562													11	52					0	0	1	0	0
LDLR	3949	broad.mit.edu	37	19	11231096	11231096	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11231096C>T	uc002mqk.3	+	14	2206	c.2038C>T	c.(2038-2040)CTG>TTG	p.L680L	LDLR_uc010xlk.1_Silent_p.L680L|LDLR_uc010xll.1_Silent_p.L639L|LDLR_uc010xlm.1_Silent_p.L533L|LDLR_uc010xln.1_Intron|LDLR_uc010xlo.1_Silent_p.L512L	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	680	EGF-like 3.|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	CTGCCAGTATCTGTGCCTCCC	0.622													15	72					0	0	1	0	0
KANK2	25959	broad.mit.edu	37	19	11285177	11285177	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11285177G>A	uc010dxv.2	-	11	2598	c.2040C>T	c.(2038-2040)TTC>TTT	p.F680F	KANK2_uc002mqm.2_Silent_p.F688F|KANK2_uc002mqo.3_Silent_p.F680F|KANK2_uc002mqp.1_Silent_p.F489F	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	680	ANK 1.										0						GCACCACGGGGAAGTTGGCAT	0.642													4	19					0	0	1	0	0
KANK2	25959	broad.mit.edu	37	19	11289038	11289038	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11289038G>A	uc010dxv.2	-	8	2061	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F	KANK2_uc002mqm.2_Silent_p.F509F|KANK2_uc002mqo.3_Silent_p.F501F|KANK2_uc002mqp.1_Silent_p.F310F	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	501											0						TGACCCCCACGAACTGGAGGC	0.647													13	16					0	0	1	0	0
DOCK6	57572	broad.mit.edu	37	19	11319416	11319416	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11319416G>A	uc002mqs.3	-	39	5075	c.5034C>T	c.(5032-5034)TTC>TTT	p.F1678F	DOCK6_uc002mqr.3_Silent_p.F76F|DOCK6_uc010xlq.1_Silent_p.F1017F	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1678	DHR-2.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCAGCTCAGTGAAGTGCTTCC	0.642													18	44					0	0	1	0	0
DOCK6	57572	broad.mit.edu	37	19	11343898	11343898	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11343898G>A	uc002mqs.3	-	22	2740	c.2699C>T	c.(2698-2700)TCC>TTC	p.S900F	DOCK6_uc010xlq.1_Missense_Mutation_p.S204F	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	900					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CAGGATGCGGGAAACCTCGTC	0.622													10	21					0	0	1	0	0
DOCK6	57572	broad.mit.edu	37	19	11344004	11344004	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11344004G>A	uc002mqs.3	-	22	2634	c.2593C>T	c.(2593-2595)CGT>TGT	p.R865C	DOCK6_uc010xlq.1_Missense_Mutation_p.R169C	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	865					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCAGAGCCACGGGCCAGTGTG	0.607													11	30					0	0	1	0	0
RAB3D	9545	broad.mit.edu	37	19	11448054	11448054	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11448054G>A	uc002mqy.2	-	2	260	c.22C>T	c.(22-24)CAG>TAG	p.Q8*		NM_004283	NP_004274	O95716	RAB3D_HUMAN	RAB3D, member RAS oncogene family	8					exocytosis|protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			ovary(2)	2						GGGCCTGCCTGGGTGTCTCCA	0.517													39	104					0	0	1	0	0
TMEM205	374882	broad.mit.edu	37	19	11456054	11456054	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11456054G>A	uc002mrb.2	-	3	326	c.138C>T	c.(136-138)TTC>TTT	p.F46F	TMEM205_uc002mra.2_Silent_p.F46F|TMEM205_uc002mqz.2_Silent_p.F46F|TMEM205_uc002mrc.2_Silent_p.F46F|CCDC159_uc010xlr.1_5'Flank|CCDC159_uc010xls.1_5'Flank|CCDC159_uc010xlt.1_5'Flank|CCDC159_uc010xlu.1_5'Flank|CCDC159_uc010xlv.1_5'Flank	NM_001145416	NP_001138888	Q6UW68	TM205_HUMAN	transmembrane protein 205	46						integral to membrane					0						GCACTAGTCCGAAGGTATGTC	0.552													10	58					0	0	1	0	0
PRKCSH	5589	broad.mit.edu	37	19	11558330	11558330	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11558330C>T	uc002mrt.2	+	11	1262	c.926C>T	c.(925-927)TCG>TTG	p.S309L	PRKCSH_uc002mru.2_Missense_Mutation_p.S309L|PRKCSH_uc010xlz.1_Missense_Mutation_p.S309L|PRKCSH_uc010dya.2_Intron|PRKCSH_uc002mrv.1_Missense_Mutation_p.S309L|PRKCSH_uc010dyb.2_Missense_Mutation_p.S309L	NM_002743	NP_002734	P14314	GLU2B_HUMAN	protein kinase C substrate 80K-H isoform 1	309					innate immune response|intracellular protein kinase cascade|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen	calcium ion binding|protein kinase C binding				0						CCAGTGCCCTCGTCGCCCACA	0.473													12	28					0	0	1	0	0
ELAVL3	1995	broad.mit.edu	37	19	11567934	11567934	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11567934C>T	uc002mry.1	-	6	1123	c.743G>A	c.(742-744)GGC>GAC	p.G248D	ELAVL3_uc002mrx.1_Missense_Mutation_p.G248D	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	248				G -> A (in Ref. 4; BAA21838).	cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						CCTCTTGACGCCGTAGGCCAT	0.647													3	15					0	0	1	0	0
ELAVL3	1995	broad.mit.edu	37	19	11568980	11568980	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11568980C>T	uc002mry.1	-	5	989	c.609G>A	c.(607-609)GCG>GCA	p.A203A	ELAVL3_uc002mrx.1_Silent_p.A203A	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	203	RRM 2.				cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						TTGGGTTGTTCGCGAACTTGA	0.602													29	64					0	0	1	0	0
ELAVL3	1995	broad.mit.edu	37	19	11577595	11577595	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11577595G>A	uc002mry.1	-	2	437	c.57C>T	c.(55-57)GGC>GGT	p.G19G	ELAVL3_uc002mrx.1_Silent_p.G19G	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	19					cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						GCAgggccgggccggccgggc	0.522													9	29					0	0	1	0	0
ECSIT	51295	broad.mit.edu	37	19	11624842	11624842	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11624842C>T	uc002msb.2	-	3	425	c.291G>A	c.(289-291)GCG>GCA	p.A97A	ECSIT_uc002msa.1_5'Flank|ECSIT_uc010dyc.1_Silent_p.A97A|ECSIT_uc010dyd.2_Silent_p.A97A|ECSIT_uc010xma.1_Intron	NM_016581	NP_057665	Q9BQ95	ECSIT_HUMAN	evolutionarily conserved signaling intermediate	97					innate immune response|regulation of oxidoreductase activity	mitochondrion	oxidoreductase activity, acting on NADH or NADPH|protein binding			ovary(1)	1						CGCTGTGCTCCGCAAATTTCT	0.622													18	58					0	0	1	0	0
CNN1	1264	broad.mit.edu	37	19	11658696	11658696	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11658696G>A	uc002msc.1	+	5	639	c.475G>A	c.(475-477)GAA>AAA	p.E159K	CNN1_uc010xmb.1_Missense_Mutation_p.E109K|CNN1_uc010xmc.1_Missense_Mutation_p.E109K	NM_001299	NP_001290	P51911	CNN1_HUMAN	calponin 1, basic, smooth muscle	159					actomyosin structure organization|regulation of smooth muscle contraction	cytoskeleton	actin binding|calmodulin binding				0						GAAGCTAAGAGAAGGGCGGAA	0.582													20	27					0	0	1	0	0
ZNF823	55552	broad.mit.edu	37	19	11833307	11833307	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11833307G>A	uc002msm.2	-	4	1168	c.1042C>T	c.(1042-1044)CGA>TGA	p.R348*	ZNF823_uc010xmd.1_Nonsense_Mutation_p.R166*|ZNF823_uc010dyi.1_Nonsense_Mutation_p.R304*	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	348	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TCATGATTTCGAACTGAACTA	0.418										HNSCC(68;0.2)			20	155					0	0	1	0	0
ZNF441	126068	broad.mit.edu	37	19	11891923	11891923	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11891923C>T	uc010dyj.2	+	4	1478	c.1284C>T	c.(1282-1284)TTC>TTT	p.F428F	ZNF441_uc002msn.3_Silent_p.F384F	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	428	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GAAAAGCCTTCATTTGTTGCA	0.368													22	49					0	0	1	0	0
ZNF491	126069	broad.mit.edu	37	19	11917576	11917576	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11917576C>T	uc002mso.1	+	3	1093	c.808C>T	c.(808-810)CCT>TCT	p.P270S		NM_152356	NP_689569	Q8N8L2	ZN491_HUMAN	zinc finger protein 491	270					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TGGAGAGAGGCCTCATAAATG	0.408													23	75					0	0	1	0	0
ZNF439	90594	broad.mit.edu	37	19	11978185	11978185	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:11978185C>T	uc002mss.2	+	3	429	c.301C>T	c.(301-303)CCA>TCA	p.P101S	ZNF439_uc002msr.2_5'UTR	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	101	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AACTTTTACCCCAGTTCCAGA	0.388													16	219					0	0	1	0	0
ZNF763	284390	broad.mit.edu	37	19	12089447	12089447	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12089447C>T	uc002msw.2	+	4	863	c.708C>T	c.(706-708)TCC>TCT	p.S236S	ZNF763_uc010xmf.1_Silent_p.S256S|ZNF763_uc002msv.2_Silent_p.S239S|ZNF763_uc010xmg.1_Silent_p.S114S	NM_001012753	NP_001012771	Q0D2J5	ZN763_HUMAN	zinc finger protein 763	236	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						GTGTTAAATCCTTTAGTTATT	0.378													28	84					0	0	1	0	0
ZNF878	729747	broad.mit.edu	37	19	12155097	12155097	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12155097C>T	uc002mta.1	-	5	1260	c.1260G>A	c.(1258-1260)GGG>GGA	p.G420G		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	373	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TGAAGGTTTTCCCACATTGTT	0.398													16	60					0	0	1	0	0
ZNF878	729747	broad.mit.edu	37	19	12155160	12155160	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12155160C>T	uc002mta.1	-	5	1197	c.1197G>A	c.(1195-1197)AAG>AAA	p.K399K		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	352	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TTCGAAGATCCTTGACAAAAC	0.373													7	85					0	0	1	0	0
ZNF844	284391	broad.mit.edu	37	19	12184860	12184860	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12184860C>T	uc002mtb.2	+	2	161	c.18C>T	c.(16-18)TTC>TTT	p.F6F	ZNF844_uc010dym.1_5'UTR	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	6	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGTGGCTTTCGAGGATGTGG	0.498													51	98					0	0	1	0	0
ZNF844	284391	broad.mit.edu	37	19	12184911	12184911	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12184911T>A	uc002mtb.2	+	2	212	c.69T>A	c.(67-69)CCT>CCA	p.P23P	ZNF844_uc010dym.1_5'UTR	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	23	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGCTGGATCCTTCCCAGAAGA	0.493													41	103					0	0	1	0	0
ZNF844	284391	broad.mit.edu	37	19	12186665	12186665	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12186665G>A	uc002mtb.2	+	4	873	c.730G>A	c.(730-732)GAA>AAA	p.E244K	ZNF844_uc010dym.1_Missense_Mutation_p.E87K	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	244	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCAAATACATGAAAGAACTCA	0.373													9	35					0	0	1	0	0
ZNF844	284391	broad.mit.edu	37	19	12187389	12187389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12187389C>T	uc002mtb.2	+	4	1597	c.1454C>T	c.(1453-1455)TCA>TTA	p.S485L	ZNF844_uc010dym.1_Missense_Mutation_p.S328L	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	485					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTAAAGCCTTCATTTTTTCCA	0.448													38	70					0	0	1	0	0
ZNF788	388507	broad.mit.edu	37	19	12223856	12223856	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12223856G>A	uc002mtd.2	+	3	2131	c.1494G>A	c.(1492-1494)GGG>GGA	p.G498G		NR_027049				RecName: Full=Zinc finger protein 788;												0						CTCACATTGGGGAGAAACCCT	0.418													5	34					0	0	1	0	0
ZNF20	7568	broad.mit.edu	37	19	12243696	12243696	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12243696G>A	uc002mtf.1	-	4	1448	c.1305C>T	c.(1303-1305)TTC>TTT	p.F435F	ZNF20_uc002mte.1_Silent_p.F400F|ZNF20_uc002mtg.1_Silent_p.F435F	NM_021143	NP_066966	P17024	ZNF20_HUMAN	zinc finger protein 20	435	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCAAGGAAGAGAAATACCTGA	0.408													21	68					0	0	1	0	0
ZNF625	90589	broad.mit.edu	37	19	12256752	12256753	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12256752_12256753CC>TT	uc002mth.2	-	4	630_631	c.280_281GG>AA	c.(280-282)GGG>AAG	p.G94K	ZNF20_uc002mtg.1_Intron|ZNF625_uc010dyn.1_RNA|ZNF625_uc010dyo.1_Missense_Mutation_p.G128K	NM_145233	NP_660276	Q96I27	ZN625_HUMAN	zinc finger protein 625	94					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATAAGGTTTCCCCCCAGTGTGA	0.426													19	146					0	0	1	0	0
ZNF136	7695	broad.mit.edu	37	19	12297482	12297482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12297482C>T	uc002mti.2	+	4	389	c.289C>T	c.(289-291)CCT>TCT	p.P97S	ZNF136_uc010xmh.1_Missense_Mutation_p.P31S	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	97					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						CAAGAAAATCCCTGGAGTGAA	0.403													23	73					0	0	1	0	0
ZNF44	51710	broad.mit.edu	37	19	12384283	12384283	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12384283G>A	uc010xmj.1	-	5	1136	c.931C>T	c.(931-933)CCT>TCT	p.P311S	ZNF44_uc002mtl.2_Intron|ZNF44_uc010dyr.1_Intron|ZNF44_uc010xmi.1_RNA|ZNF44_uc002mtn.3_RNA|ZNF44_uc010dys.2_Missense_Mutation_p.P263S	NM_001164276	NP_001157748	P15621	ZNF44_HUMAN	zinc finger protein 44 isoform 1	311	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1		Renal(1328;0.157)		GBM - Glioblastoma multiforme(1328;0.0164)|Lung(535;0.179)		CTGTAATCAGGGAAGGCTTTA	0.408													59	169					0	0	1	0	0
ZNF44	51710	broad.mit.edu	37	19	12384536	12384536	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12384536G>A	uc010xmj.1	-	5	883	c.678C>T	c.(676-678)TTC>TTT	p.F226F	ZNF44_uc002mtl.2_Intron|ZNF44_uc010dyr.1_Intron|ZNF44_uc010xmi.1_RNA|ZNF44_uc002mtn.3_RNA|ZNF44_uc010dys.2_Silent_p.F178F	NM_001164276	NP_001157748	P15621	ZNF44_HUMAN	zinc finger protein 44 isoform 1	226	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1		Renal(1328;0.157)		GBM - Glioblastoma multiforme(1328;0.0164)|Lung(535;0.179)		CAGGAGAACTGAAGGTTTTTC	0.413													22	80					0	0	1	0	0
ZNF563	147837	broad.mit.edu	37	19	12429458	12429458	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12429458G>A	uc002mtp.2	-	4	1619	c.1381C>T	c.(1381-1383)CCC>TCC	p.P461S		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	461	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CATACACTGGGATAAACAAAG	0.378													52	109					0	0	1	0	0
ZNF442	79973	broad.mit.edu	37	19	12460892	12460892	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12460892G>A	uc002mtr.1	-	6	2118	c.1507C>T	c.(1507-1509)CTT>TTT	p.L503F	ZNF442_uc010xmk.1_Missense_Mutation_p.L434F	NM_030824	NP_110451	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	503	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(2)|breast(1)|kidney(1)	4						TGTTGAGAAAGGTATGTGAAA	0.353													36	140					0	0	1	0	0
ZNF709	163051	broad.mit.edu	37	19	12576177	12576177	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12576177C>T	uc002mtv.3	-	4	720	c.559G>A	c.(559-561)GAA>AAA	p.E187K	ZNF709_uc002mtw.3_Missense_Mutation_p.E155K|ZNF709_uc002mtx.3_Missense_Mutation_p.E187K	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	187	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGTTCTTTCATGTATTTGA	0.403													36	98					0	0	1	0	0
ZNF564	163050	broad.mit.edu	37	19	12639443	12639443	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12639443G>A	uc002mty.2	-	2	281	c.71C>T	c.(70-72)TCC>TTC	p.S24F	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	24	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTTCTTCTGGGAAGGATCCAG	0.463													51	124					0	0	1	0	0
ZNF490	57474	broad.mit.edu	37	19	12691844	12691844	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12691844G>A	uc002mtz.2	-	5	1174	c.1045C>T	c.(1045-1047)CTT>TTT	p.L349F		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	349	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGTTTTCGAAGGCTTGAGTGA	0.448													27	108					0	0	1	0	0
ZNF490	57474	broad.mit.edu	37	19	12692196	12692196	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12692196G>A	uc002mtz.2	-	5	822	c.693C>T	c.(691-693)TTC>TTT	p.F231F		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	231	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGAGAAATGCGAAGGCTTTGC	0.423													42	83					0	0	1	0	0
MAN2B1	4125	broad.mit.edu	37	19	12760765	12760765	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12760765G>A	uc002mub.2	-	18	2305	c.2229C>T	c.(2227-2229)TTC>TTT	p.F743F	MAN2B1_uc010dyv.1_Silent_p.F742F	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	743					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						TGTCTGTGTAGAAGCGTCCCT	0.607													65	156					0	0	1	0	0
MAN2B1	4125	broad.mit.edu	37	19	12760990	12760990	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12760990G>A	uc002mub.2	-	17	2169	c.2093C>T	c.(2092-2094)TCC>TTC	p.S698F	MAN2B1_uc010dyv.1_Missense_Mutation_p.S697F	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	698					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						AACCACCTGGGAACACCAAGC	0.627													14	134					0	0	1	0	0
MAN2B1	4125	broad.mit.edu	37	19	12774193	12774193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12774193G>A	uc002mub.2	-	6	923	c.847C>T	c.(847-849)CGC>TGC	p.R283C	MAN2B1_uc010dyv.1_Missense_Mutation_p.R283C	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	283					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						TCGGGGCTGCGAGGGTCCTCC	0.567													35	73					0	0	1	0	0
FBXW9	84261	broad.mit.edu	37	19	12799973	12799973	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12799973G>A	uc010xmp.1	-	8		c.1241C>T			uc002mul.1_Silent_p.K77K|FBXW9_uc002mum.1_3'UTR|FBXW9_uc002mun.1_3'UTR|FBXW9_uc010dyx.2_3'UTR			Q5XUX1	FBXW9_HUMAN	Homo sapiens cDNA FLJ41042 fis, clone NT2RI2005166, highly similar to F-box/WD repeat protein 9.								protein binding			ovary(1)	1						GGTCCCCCAAGAACAGAGGAG	0.657													11	18					0	0	1	0	0
FBXW9	84261	broad.mit.edu	37	19	12802014	12802014	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12802014G>A	uc010dyx.2	-	5	819	c.819C>T	c.(817-819)ACC>ACT	p.T273T	FBXW9_uc010xmp.1_RNA|FBXW9_uc002mum.1_Silent_p.T283T|FBXW9_uc002mun.1_Silent_p.T120T	NM_032301	NP_115677	Q5XUX1	FBXW9_HUMAN	F-box and WD-40 domain protein 9	283	WD 3.						protein binding			ovary(1)	1						TCTTGTCATAGGTGCCAGTCA	0.577													39	112					0	0	1	0	0
TNPO2	30000	broad.mit.edu	37	19	12814536	12814536	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12814536G>A	uc002muo.2	-	18	2287	c.2102C>T	c.(2101-2103)CCC>CTC	p.P701L	TNPO2_uc002mup.2_Missense_Mutation_p.P793L|TNPO2_uc002muq.2_Missense_Mutation_p.P701L|TNPO2_uc002mur.2_Missense_Mutation_p.P701L	NM_001136196	NP_001129668	O14787	TNPO2_HUMAN	transportin 2 (importin 3, karyopherin beta 2b)	701	HEAT 12.				intracellular protein transport	cytoplasm|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			ovary(1)	1						ACCGATACAGGGCTTGACATG	0.577													3	9					0	0	1	0	0
TNPO2	30000	broad.mit.edu	37	19	12826135	12826135	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12826135G>A	uc002muo.2	-	7	755	c.570C>T	c.(568-570)TCC>TCT	p.S190S	TNPO2_uc002mup.2_Silent_p.S282S|TNPO2_uc002muq.2_Silent_p.S190S|TNPO2_uc002mur.2_Silent_p.S190S	NM_001136196	NP_001129668	O14787	TNPO2_HUMAN	transportin 2 (importin 3, karyopherin beta 2b)	190	HEAT 2.				intracellular protein transport	cytoplasm|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			ovary(1)	1						CGATGGCGTGGGACCTGGCGG	0.662													12	25					0	0	1	0	0
RTBDN	83546	broad.mit.edu	37	19	12939478	12939479	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12939478_12939479GG>AA	uc002mvi.2	-	4	487_488	c.357_358CC>TT	c.(355-360)TGCCAG>TGTTAG	p.Q120*	RTBDN_uc002mvh.1_Nonsense_Mutation_p.Q152*|RTBDN_uc002mvj.2_Nonsense_Mutation_p.Q152*	NM_001080997	NP_001074466	Q9BSG5	RTBDN_HUMAN	retbindin isoform 1	120						extracellular region					0						TACCAGGCCTGGCAGAGCTCCT	0.653													9	36					0	0	1	0	0
RTBDN	83546	broad.mit.edu	37	19	12939536	12939536	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12939536G>A	uc002mvi.2	-	4	430	c.300C>T	c.(298-300)CGC>CGT	p.R100R	RTBDN_uc002mvh.1_Silent_p.R132R|RTBDN_uc002mvj.2_Silent_p.R132R	NM_001080997	NP_001074466	Q9BSG5	RTBDN_HUMAN	retbindin isoform 1	100						extracellular region					0						GCAGGCGGAAGCGACTGCGAA	0.652													15	88					0	0	1	0	0
RTBDN	83546	broad.mit.edu	37	19	12945613	12945613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12945613G>A	uc002mvj.2	-	2	382	c.64C>T	c.(64-66)CTC>TTC	p.L22F	RTBDN_uc002mvh.1_Missense_Mutation_p.L22F|MAST1_uc002mvk.2_Intron	NM_031429	NP_113617	Q9BSG5	RTBDN_HUMAN	retbindin isoform 2	Error:Variant_position_missing_in_Q9BSG5_after_alignment						extracellular region					0						AAGGTGGGGAGGGATTCTGTA	0.582													16	58					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12969363	12969363	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12969363G>A	uc002mvm.2	+	12	1304	c.1176G>A	c.(1174-1176)CGG>CGA	p.R392R	MAST1_uc002mvk.2_Silent_p.R388R	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	392	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						ACCTGGTGCGGCACCGCGACA	0.657													21	57					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12969475	12969475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12969475G>A	uc002mvm.2	+	12	1416	c.1288G>A	c.(1288-1290)GAG>AAG	p.E430K	MAST1_uc002mvk.2_Missense_Mutation_p.E426K	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	430	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CACCTTCGCCGAGAACCCGTT	0.572													22	40					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12976259	12976259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12976259G>A	uc002mvm.2	+	15	1896	c.1768G>A	c.(1768-1770)GAC>AAC	p.D590N		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	590	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CTTCTTCGGAGACACACCAGA	0.587													21	164					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12978676	12978676	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12978676C>T	uc002mvm.2	+	20	2579	c.2451C>T	c.(2449-2451)GCC>GCT	p.A817A		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	817					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						AGGATGAGGCCCGGCTGCGCA	0.731													3	18					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12979590	12979590	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12979590G>A	uc002mvm.2	+	21	2828	c.2700G>A	c.(2698-2700)AAG>AAA	p.K900K		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	900					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CAGTAGAGAAGAGGCCTTCTC	0.592													9	147					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12979903	12979903	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:12979903C>T	uc002mvm.2	+	22	2925	c.2797C>T	c.(2797-2799)CTT>TTT	p.L933F		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	933					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						AAGTTCACCCCTTGCTAGTCC	0.562													23	72					0	0	1	0	0
DAND5	199699	broad.mit.edu	37	19	13084208	13084208	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13084208C>T	uc002mwc.1	+	2	373	c.330C>T	c.(328-330)TTC>TTT	p.F110F	DAND5_uc010dyz.1_3'UTR	NM_152654	NP_689867	Q8N907	DAND5_HUMAN	dante precursor	110	CTCK.					extracellular region				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(19;1.87e-18)			CCCAGGTGTTCTCCCGGCCCG	0.617													19	81					0	0	1	0	0
DAND5	199699	broad.mit.edu	37	19	13084385	13084385	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13084385C>T	uc002mwc.1	+	2	550	c.507C>T	c.(505-507)TCC>TCT	p.S169S	DAND5_uc010dyz.1_3'UTR	NM_152654	NP_689867	Q8N907	DAND5_HUMAN	dante precursor	169	CTCK.					extracellular region				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(19;1.87e-18)			GCTCAGCCTCCCGTCGACGGG	0.612													37	84					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13322932	13322932	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13322932G>A	uc010dze.2	-	43	6527	c.6291C>T	c.(6289-6291)CTC>CTT	p.L2097L	CACNA1A_uc010xnd.1_Silent_p.L802L|CACNA1A_uc002mwx.3_Silent_p.L802L|CACNA1A_uc010dzc.2_Silent_p.L1622L|CACNA1A_uc002mwy.3_Silent_p.L2096L|CACNA1A_uc002mwv.3_Silent_p.L613L	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	2097	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCTCTGCAGGGAGGCGGGGCA	0.667													9	39					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13323499	13323499	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13323499C>T	uc010dze.2	-	41	6235	c.5999G>A	c.(5998-6000)GGG>GAG	p.G2000E	CACNA1A_uc010xnd.1_Missense_Mutation_p.G705E|CACNA1A_uc002mwx.3_Missense_Mutation_p.G705E|CACNA1A_uc010dzc.2_Missense_Mutation_p.G1525E|CACNA1A_uc002mwy.3_Missense_Mutation_p.G1999E|CACNA1A_uc002mwv.3_Missense_Mutation_p.G516E	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	2000	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GCCAGGTCCCCCTTCCTGCGT	0.687													6	8					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13366056	13366056	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13366056G>A	uc010dze.2	-	29	4847	c.4611C>T	c.(4609-4611)TTC>TTT	p.F1537F	CACNA1A_uc010xnd.1_Silent_p.F242F|CACNA1A_uc002mwx.3_Silent_p.F242F|CACNA1A_uc010dzc.2_Silent_p.F1062F|CACNA1A_uc002mwy.3_Silent_p.F1536F|CACNA1A_uc010xne.1_Silent_p.F1065F|CACNA1A_uc002mwv.3_Silent_p.F53F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1537	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CGCTGATGGCGAAATCAATGC	0.612													4	16					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13386683	13386683	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13386683G>A	uc010dze.2	-	24	4209	c.3973C>T	c.(3973-3975)CTG>TTG	p.L1325L	CACNA1A_uc010xnd.1_Silent_p.L30L|CACNA1A_uc002mwx.3_Silent_p.L30L|CACNA1A_uc010dzc.2_Silent_p.L850L|CACNA1A_uc002mwy.3_Silent_p.L1324L|CACNA1A_uc010xne.1_Silent_p.L853L	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1325	III.|Helical; Name=S3 of repeat III; (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	AAGGCTACCAGGGCCCCACTG	0.562													12	28					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13395998	13395998	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13395998G>T	uc010dze.2	-	21	3815	c.3579C>A	c.(3577-3579)GAC>GAA	p.D1193E	CACNA1A_uc010dzc.2_Missense_Mutation_p.D718E|CACNA1A_uc002mwy.3_Missense_Mutation_p.D1192E|CACNA1A_uc010xne.1_Missense_Mutation_p.D721E	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1193	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TTGGCAGTGGGTCTGGGTTGG	0.453													18	59					3.32936e-07	3.3363e-07	1	1	0
CACNA1A	773	broad.mit.edu	37	19	13397555	13397555	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13397555G>A	uc010dze.2	-	20	3554	c.3318C>T	c.(3316-3318)CCC>CCT	p.P1106P	CACNA1A_uc010dzc.2_Silent_p.P631P|CACNA1A_uc002mwy.3_Silent_p.P1105P|CACNA1A_uc010xne.1_Silent_p.P634P	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1106	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TGGCCAGCATGGGGCCGGGGT	0.726													6	18					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13397666	13397666	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13397666C>T	uc010dze.2	-	20	3443	c.3207G>A	c.(3205-3207)ATG>ATA	p.M1069I	CACNA1A_uc010dzc.2_Missense_Mutation_p.M594I|CACNA1A_uc002mwy.3_Missense_Mutation_p.M1068I|CACNA1A_uc010xne.1_Missense_Mutation_p.M597I	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1069	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TGTTGTTCTTCATGTTGTCAA	0.672													11	27					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13397765	13397765	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13397765G>T	uc010dze.2	-	20	3344	c.3108C>A	c.(3106-3108)TCC>TCA	p.S1036S	CACNA1A_uc010dzc.2_Silent_p.S561S|CACNA1A_uc002mwy.3_Silent_p.S1035S|CACNA1A_uc010xne.1_Silent_p.S564S	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1036	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CAGGGACCCCGGAGCCCTGGT	0.537													18	16					2.94398e-08	2.95207e-08	1	1	0
CACNA1A	773	broad.mit.edu	37	19	13414658	13414658	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13414658C>T	uc010dze.2	-	16	2266	c.2030G>A	c.(2029-2031)GGG>GAG	p.G677E	CACNA1A_uc010dzc.2_Missense_Mutation_p.G202E|CACNA1A_uc002mwy.3_Missense_Mutation_p.G676E|CACNA1A_uc010xne.1_Missense_Mutation_p.G202E	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	677	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	AGACTTGATCCCGTCGTACAT	0.557													121	74					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13414699	13414699	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13414699C>T	uc010dze.2	-	16	2226	c.1990_splice	c.e16-1	p.I664_splice	CACNA1A_uc010dzc.2_Splice_Site_p.I189_splice|CACNA1A_uc002mwy.3_Splice_Site_p.I663_splice|CACNA1A_uc010xne.1_Splice_Site_p.I189_splice	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3						cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CCGTCAGGATCTGAAAGGGGA	0.607													20	98					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13418631	13418631	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13418631C>T	uc010dze.2	-	15	2190	c.1954G>A	c.(1954-1956)GAT>AAT	p.D652N	CACNA1A_uc010dzc.2_Missense_Mutation_p.D177N|CACNA1A_uc002mwy.3_Missense_Mutation_p.D651N|CACNA1A_uc010xne.1_Missense_Mutation_p.D177N	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	652	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GGAAAAGTATCGAAGTTGGTG	0.557													22	84					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13418643	13418643	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13418643G>A	uc010dze.2	-	15	2178	c.1942C>T	c.(1942-1944)CCC>TCC	p.P648S	CACNA1A_uc010dzc.2_Missense_Mutation_p.P173S|CACNA1A_uc002mwy.3_Missense_Mutation_p.P647S|CACNA1A_uc010xne.1_Missense_Mutation_p.P173S	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	648	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	AAGTTGGTGGGAGGAGTCCCT	0.542													27	83					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13418659	13418659	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13418659G>A	uc010dze.2	-	15	2162	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	CACNA1A_uc010dzc.2_Silent_p.F167F|CACNA1A_uc002mwy.3_Silent_p.F641F|CACNA1A_uc010xne.1_Silent_p.F167F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	642	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCCCTTCATCGAAATTAAACC	0.547													19	91					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13423582	13423582	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13423582G>A	uc010dze.2	-	12	1808	c.1572C>T	c.(1570-1572)TTC>TTT	p.F524F	CACNA1A_uc010dzc.2_Silent_p.F49F|CACNA1A_uc002mwy.3_Silent_p.F523F|CACNA1A_uc010xne.1_Silent_p.F49F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	524	Helical; Name=S2 of repeat II; (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CTAAGAAAATGAATTCTGCAT	0.458													11	38					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13563773	13563773	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13563773G>A	uc010dze.2	-	3	692	c.456C>T	c.(454-456)ATC>ATT	p.I152I	CACNA1A_uc002mwy.3_Silent_p.I152I	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	152	I.|Helical; Name=S2 of repeat I; (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CAAGGGCAATGATTTTAATTC	0.498													57	139					0	0	1	0	0
MIR181C	406957	broad.mit.edu	37	19	13985595	13985595	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13985595G>A	hsa-mir-181c|MI0000271	+			c.83G>A			uc010xnh.1_RNA|MIR181D_hsa-mir-181d|MI0003139_5'Flank|uc010dzg.1_5'Flank|NANOS3_uc002mxj.3_5'Flank																	0						ACCGTTGAGTGGACCCTGAGG	0.612													26	65					0	0	1	0	0
NANOS3	342977	broad.mit.edu	37	19	13988354	13988354	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:13988354G>A	uc002mxj.3	+	1	405	c.292G>A	c.(292-294)GAG>AAG	p.E98K		NM_001098622	NP_001092092	P60323	NANO3_HUMAN	nanos homolog 3	79	C2HC 1.|Nanos-type.				anti-apoptosis|germ cell development|multicellular organismal development|oogenesis|regulation of cell cycle|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|nucleus|stress granule	RNA binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			GCTGAAGGACGAGGCTGGCAG	0.662													10	36					0	0	1	0	0
C19orf57	79173	broad.mit.edu	37	19	14001207	14001207	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14001207G>A	uc002mxl.1	-	6	521	c.462C>T	c.(460-462)CCC>CCT	p.P154P	C19orf57_uc002mxk.1_Silent_p.P36P|C19orf57_uc002mxm.1_Intron	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	154					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			CCTCCTGGAGGGGGACCCCCA	0.682													22	48					0	0	1	0	0
RFX1	5989	broad.mit.edu	37	19	14094343	14094343	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14094343G>A	uc002mxv.2	-	3	656	c.384C>T	c.(382-384)ACC>ACT	p.T128T	RFX1_uc010dzi.2_Silent_p.T128T	NM_002918	NP_002909	P22670	RFX1_HUMAN	regulatory factor X1	128					immune response	nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			lung(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.67e-23)			TAGGAACGCCGGTCTGGCTGG	0.701													5	14					0	0	1	0	0
IL27RA	9466	broad.mit.edu	37	19	14150715	14150715	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14150715G>A	uc002mxx.2	+	4	950	c.527G>A	c.(526-528)TGG>TAG	p.W176*		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	176	Extracellular (Potential).|Fibronectin type-III 1.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						GAGGCGGCCTGGACCCTGGTG	0.587													47	86					0	0	1	0	0
IL27RA	9466	broad.mit.edu	37	19	14157366	14157367	+	Missense_Mutation	DNP	GG	AA	AA	rs140727303		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14157366_14157367GG>AA	uc002mxx.2	+	8	1500_1501	c.1077_1078GG>AA	c.(1075-1080)GGGGAC>GGAAAC	p.D360N		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	360	Extracellular (Potential).|Fibronectin type-III 2.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						CTCGAGATGGGGACCCCCTGGA	0.644													31	100					0	0	1	0	0
IL27RA	9466	broad.mit.edu	37	19	14160012	14160012	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14160012C>T	uc002mxx.2	+	10	1711	c.1288C>T	c.(1288-1290)CCA>TCA	p.P430S		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	430	Extracellular (Potential).|Fibronectin type-III 3.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						AGATGCCCCTCCAGGGACCCC	0.647											OREG0025303	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	51					0	0	1	0	0
ASF1B	55723	broad.mit.edu	37	19	14247214	14247214	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14247214G>A	uc002mye.2	-	1	227	c.55C>T	c.(55-57)CAC>TAC	p.H19Y	uc002myf.2_5'Flank	NM_018154	NP_060624	Q9NVP2	ASF1B_HUMAN	anti-silencing function 1B	19	Interaction with CHAF1B.|Interaction with histone H3 (By similarity).				cell differentiation|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus					0						AAGGGGCTGTGGAAAGGGCTC	0.716													13	43					0	0	1	0	0
CD97	976	broad.mit.edu	37	19	14512561	14512561	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14512561C>T	uc002myl.2	+	11	1295	c.1172C>T	c.(1171-1173)GCC>GTC	p.A391V	CD97_uc002mym.2_Missense_Mutation_p.A342V|CD97_uc002myn.2_Missense_Mutation_p.A298V	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	391	Extracellular (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						GCAGCTGGAGCCGAGGATCCA	0.602													4	26					0	0	1	0	0
PKN1	5585	broad.mit.edu	37	19	14568910	14568910	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14568910C>T	uc002myp.2	+	8	1401	c.1233C>T	c.(1231-1233)GGC>GGT	p.G411G	PKN1_uc002myq.2_Silent_p.G417G	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	411	C2.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						AGCCATGTGGCCCCAATGCCT	0.577													43	200					0	0	1	0	0
GIPC1	10755	broad.mit.edu	37	19	14593559	14593559	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14593559G>A	uc002myt.2	-	4	500	c.230C>T	c.(229-231)ACC>ATC	p.T77I	GIPC1_uc002myu.2_Missense_Mutation_p.T77I|GIPC1_uc002myv.2_Intron|GIPC1_uc002myw.2_Intron|GIPC1_uc002myx.2_Missense_Mutation_p.T77I|GIPC1_uc002myy.2_Intron	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	77					endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						CTTGACGTTGGTGAAGCCCTC	0.677													9	25					0	0	1	0	0
NDUFB7	4713	broad.mit.edu	37	19	14682756	14682756	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14682756G>A	uc002mzg.2	-	1	131	c.57C>T	c.(55-57)CCC>CCT	p.P19P		NM_004146	NP_004137	P17568	NDUB7_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	19					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			ovary(1)	1					NADH(DB00157)	GCATCTGCAGGGGGTCGGGCT	0.716													4	15					0	0	1	0	0
CLEC17A	388512	broad.mit.edu	37	19	14707798	14707798	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14707798C>T	uc010dzn.1	+	9	633	c.556C>T	c.(556-558)CTT>TTT	p.L186F	CLEC17A_uc002mzh.1_Missense_Mutation_p.L169F|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Missense_Mutation_p.L186F|CLEC17A_uc010dzo.1_Missense_Mutation_p.L186F			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	186	Helical; Signal-anchor for type II membrane protein; (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						CCTGGGCTGCCTTGGTCTCAC	0.587													16	14					0	0	1	0	0
EMR3	84658	broad.mit.edu	37	19	14749141	14749142	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14749141_14749142GG>AA	uc002mzi.3	-	11	1407_1408	c.1259_1260CC>TT	c.(1258-1260)TCC>TTT	p.S420F	EMR3_uc010dzp.2_Missense_Mutation_p.S368F|EMR3_uc010xnv.1_Missense_Mutation_p.S294F	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	420	Helical; Name=3; (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						CGGCGATGATGGAGCACAGCAC	0.589													8	37					0	0	1	0	0
EMR3	84658	broad.mit.edu	37	19	14752260	14752260	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14752260G>A	uc002mzi.3	-	10	1367	c.1219C>T	c.(1219-1221)CTC>TTC	p.L407F	EMR3_uc010dzp.2_Missense_Mutation_p.L355F|EMR3_uc010xnv.1_Missense_Mutation_p.L281F	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	407	Helical; Name=2; (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						ATCCCCACGAGGAAGAGGAGG	0.567													20	74					0	0	1	0	0
EMR3	84658	broad.mit.edu	37	19	14765924	14765924	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14765924C>T	uc002mzi.3	-	6	595	c.447G>A	c.(445-447)TGG>TGA	p.W149*	EMR3_uc010dzp.2_Nonsense_Mutation_p.W97*|EMR3_uc010xnv.1_Intron	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	149	Extracellular (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						CTTCTGTTCTCCATAAAGTCT	0.368													14	101					0	0	1	0	0
EMR2	30817	broad.mit.edu	37	19	14854482	14854482	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14854482G>A	uc002mzp.1	-	19	2754	c.2298C>T	c.(2296-2298)ATC>ATT	p.I766I	EMR2_uc010dzs.1_Silent_p.I225I|EMR2_uc010xnw.1_Silent_p.I708I|EMR2_uc002mzo.1_Silent_p.I755I|EMR2_uc002mzq.1_Silent_p.I706I|EMR2_uc002mzr.1_Silent_p.I717I|EMR2_uc002mzs.1_Silent_p.I624I|EMR2_uc002mzt.1_Silent_p.I662I|EMR2_uc002mzu.1_Silent_p.I673I|EMR2_uc010xnx.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	766	Helical; Name=7; (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						GCAGGCTGTTGATGATGGTGA	0.607													58	127					0	0	1	0	0
OR7C1	26664	broad.mit.edu	37	19	14910058	14910058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14910058C>T	uc010xnz.1	-	1	891	c.891G>A	c.(889-891)ATG>ATA	p.M297I		NM_198944	NP_945182	O76099	OR7C1_HUMAN	olfactory receptor, family 7, subfamily C,	297	Cytoplasmic (Potential).				sensory perception of smell|spermatogenesis	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						GGGCCCTCTTCATGTCCGTGT	0.522													43	96					0	0	1	0	0
OR7C1	26664	broad.mit.edu	37	19	14910370	14910370	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14910370G>A	uc010xnz.1	-	1	579	c.579C>T	c.(577-579)TTC>TTT	p.F193F		NM_198944	NP_945182	O76099	OR7C1_HUMAN	olfactory receptor, family 7, subfamily C,	193	Extracellular (Potential).				sensory perception of smell|spermatogenesis	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						CGTTATTAATGAAGGTGTCAG	0.398													14	148					0	0	1	0	0
OR7A17	26333	broad.mit.edu	37	19	14991526	14991526	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:14991526G>A	uc010xob.1	-	1	642	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_030901	NP_112163	O14581	OR7AH_HUMAN	olfactory receptor, family 7, subfamily A,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					AAGAGCAAAGGATCCCCACAA	0.488													44	124					0	0	1	0	0
OR7C2	26658	broad.mit.edu	37	19	15052304	15052304	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15052304G>A	uc010xoc.1	+	1	4	c.4G>A	c.(4-6)GAA>AAA	p.E2K		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					CGGCCCCATGGAAAGAGGAAA	0.468													51	146					0	0	1	0	0
OR7C2	26658	broad.mit.edu	37	19	15052500	15052501	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15052500_15052501CC>GT	uc010xoc.1	+	1	200_201	c.200_201CC>GT	c.(199-201)TCC>TGT	p.S67C		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					TCCAACCTGTCCTTTGCTGACA	0.48													17	77					0	0	1	0	0
OR7C2	26658	broad.mit.edu	37	19	15052768	15052768	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15052768C>T	uc010xoc.1	+	1	468	c.468C>T	c.(466-468)TCC>TCT	p.S156S		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					TCATGGGTTCCTTGCTTGAGA	0.522													78	172					0	0	1	0	0
OR7C2	26658	broad.mit.edu	37	19	15052800	15052800	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15052800C>T	uc010xoc.1	+	1	500	c.500C>T	c.(499-501)TCC>TTC	p.S167F		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					TTGAGGCTGTCCTTCTGCACA	0.488													96	182					0	0	1	0	0
OR7C2	26658	broad.mit.edu	37	19	15053097	15053097	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15053097C>T	uc010xoc.1	+	1	797	c.797C>T	c.(796-798)CCT>CTT	p.P266L		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					GTTACACCACCTTCTAGGACA	0.537													49	112					0	0	1	0	0
OR7C2	26658	broad.mit.edu	37	19	15053254	15053254	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15053254C>T	uc010xoc.1	+	1	954	c.954C>T	c.(952-954)CTC>CTT	p.L318L		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	318	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					TTGCTAAGCTCTCATGAATTG	0.433													28	52					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15061169	15061170	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15061169_15061170CC>TT	uc002naa.1	-	9	1540_1541	c.1532_1533GG>AA	c.(1531-1533)GGG>GAA	p.G511E	SLC1A6_uc010dzu.1_Missense_Mutation_p.G433E|SLC1A6_uc010xod.1_Missense_Mutation_p.G447E	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	511					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CAATTGAGTCCCCCAGTACGTT	0.564													22	50					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15063777	15063777	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15063777C>T	uc002naa.1	-	8	1470	c.1462G>A	c.(1462-1464)GAA>AAA	p.E488K	SLC1A6_uc010dzu.1_Missense_Mutation_p.E410K|SLC1A6_uc010xod.1_Missense_Mutation_p.E424K	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	488	Helical; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	GTGATGTCTTCCGTGGGCAAG	0.602													52	116					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15065098	15065098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15065098G>A	uc002naa.1	-	7	1221	c.1213C>T	c.(1213-1215)CTG>TTG	p.L405L	SLC1A6_uc010dzu.1_Silent_p.L327L|SLC1A6_uc010xod.1_Silent_p.L341L	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	405					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	TCCACACCCAGGCCCTCCTCC	0.687													33	60					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15073099	15073099	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15073099C>T	uc002naa.1	-	5	658	c.650G>A	c.(649-651)GGG>GAG	p.G217E	SLC1A6_uc010dzu.1_Missense_Mutation_p.G217E|SLC1A6_uc010xod.1_Missense_Mutation_p.G153E|SLC1A6_uc002nab.2_Missense_Mutation_p.G217E|SLC1A6_uc002nac.2_Missense_Mutation_p.G217E	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	217	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CGGCTCAGACCCGTTCTCTGT	0.522													15	142					0	0	1	0	0
CCDC105	126402	broad.mit.edu	37	19	15131471	15131471	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15131471G>A	uc002nae.2	+	3	973	c.874G>A	c.(874-876)GCG>ACG	p.A292T		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	292					microtubule cytoskeleton organization	microtubule				ovary(1)	1						CTATAACCCAGGTAGGAGTCC	0.602													8	25					0	0	1	0	0
CCDC105	126402	broad.mit.edu	37	19	15132462	15132462	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15132462G>A	uc002nae.2	+	5	1175	c.1076G>A	c.(1075-1077)GGA>GAA	p.G359E		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	359					microtubule cytoskeleton organization	microtubule				ovary(1)	1						CTGATGAGGGGAACTATCCTC	0.582													7	65					0	0	1	0	0
CCDC105	126402	broad.mit.edu	37	19	15132675	15132675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15132675C>T	uc002nae.2	+	6	1294	c.1195C>T	c.(1195-1197)CGC>TGC	p.R399C		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	399					microtubule cytoskeleton organization	microtubule				ovary(1)	1						ACCCCTGGTTCGCATGTACCA	0.637													33	58					0	0	1	0	0
OR1I1	126370	broad.mit.edu	37	19	15198013	15198013	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15198013T>A	uc010xoe.1	+	1	137	c.137T>A	c.(136-138)ATC>AAC	p.I46N		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						GCCCTCATTATCCTGGCCATC	0.512													28	52					0	0	1	0	0
OR1I1	126370	broad.mit.edu	37	19	15198326	15198326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15198326G>A	uc010xoe.1	+	1	450	c.450G>A	c.(448-450)ATG>ATA	p.M150I		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						CATCATGGATGATCACCAACC	0.562													15	43					0	0	1	0	0
OR1I1	126370	broad.mit.edu	37	19	15198561	15198561	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15198561C>T	uc010xoe.1	+	1	685	c.685C>T	c.(685-687)CCT>TCT	p.P229S		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						CTTTAAGATCCCTTCTACTCG	0.517													22	61					0	0	1	0	0
OR1I1	126370	broad.mit.edu	37	19	15198724	15198724	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15198724C>T	uc010xoe.1	+	1	848	c.848C>T	c.(847-849)CCC>CTC	p.P283L		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						GTGTTCATCCCCATGCTCAAC	0.562													14	73					0	0	1	0	0
ILVBL	10994	broad.mit.edu	37	19	15234287	15234287	+	Missense_Mutation	SNP	G	A	A	rs34470764		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15234287G>A	uc002nam.2	-	3	357	c.236C>T	c.(235-237)TCC>TTC	p.S79F	ILVBL_uc010dzw.2_5'UTR|ILVBL_uc010dzx.1_Missense_Mutation_p.S79F	NM_006844	NP_006835	A1L0T0	ILVBL_HUMAN	ilvB (bacterial acetolactate synthase)-like	79						integral to membrane	magnesium ion binding|thiamine pyrophosphate binding|transferase activity			ovary(2)	2						CAGCAGCGGGGAAATGTGCCC	0.637													28	67					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15276853	15276853	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15276853C>T	uc002nan.2	-	30	5488	c.5412G>A	c.(5410-5412)GAG>GAA	p.E1804E		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1804	Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			TTGGCATTGGCTCCAGAGCCC	0.577													22	48					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15296161	15296162	+	Nonsense_Mutation	DNP	GG	AA	AA	rs140040122	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15296161_15296162GG>AA	uc002nan.2	-	14	2278_2279	c.2202_2203CC>TT	c.(2200-2205)GCCCGA>GCTTGA	p.R735*	NOTCH3_uc002nao.1_Nonsense_Mutation_p.R735*	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	735	Extracellular (Potential).|EGF-like 19.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity	p.A734A(1)		lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CAGGCGTCTCGGGCCAGGCTCT	0.678													8	20					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15299893	15299893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15299893C>T	uc002nan.2	-	8	1361	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K	NOTCH3_uc002nao.1_Missense_Mutation_p.E429K	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	429	Extracellular (Potential).|EGF-like 10; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			ACATCGGTCTCACAGCGAGGT	0.642													25	59					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15349239	15349239	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15349239G>C	uc002nar.2	-	20	4260	c.4038C>G	c.(4036-4038)GAC>GAG	p.D1346E		NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	1346					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			GGAAATTCATGTCAATGGTAG	0.468			T	NUT|C15orf55	lethal midline carcinoma of young people								24	88					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15364970	15364971	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15364970_15364971GG>AA	uc002nar.2	-	11	2372_2373	c.2150_2151CC>TT	c.(2149-2151)TCC>TTT	p.S717F	BRD4_uc002nas.2_Missense_Mutation_p.S717F|BRD4_uc002nat.3_Missense_Mutation_p.S717F	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	717	Ser-rich.				interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			AACCTGTTTCGGAGTCTTCGCT	0.545			T	NUT|C15orf55	lethal midline carcinoma of young people								7	43					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15375521	15375521	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15375521G>A	uc002nar.2	-	6	1128	c.906C>T	c.(904-906)CCC>CCT	p.P302P	BRD4_uc002nas.2_Silent_p.P302P|BRD4_uc002nat.3_Silent_p.P302P|BRD4_uc002nau.3_Silent_p.P302P	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	302					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			GCTCGTGAATGGGGTCAATGG	0.622			T	NUT|C15orf55	lethal midline carcinoma of young people						OREG0025319	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	180					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15376433	15376433	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15376433G>A	uc002nar.2	-	5	803	c.581C>T	c.(580-582)TCC>TTC	p.S194F	BRD4_uc002nas.2_Missense_Mutation_p.S194F|BRD4_uc002nat.3_Missense_Mutation_p.S194F|BRD4_uc002nau.3_Missense_Mutation_p.S194F	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	194					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			TGGTACCGTGGAAACGCCAGG	0.567			T	NUT|C15orf55	lethal midline carcinoma of young people								69	178					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15383628	15383628	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15383628G>A	uc002nar.2	-	2	505	c.283C>T	c.(283-285)CCT>TCT	p.P95S	BRD4_uc002nas.2_Missense_Mutation_p.P95S|BRD4_uc002nat.3_Missense_Mutation_p.P95S|BRD4_uc002nau.3_Missense_Mutation_p.P95S	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	95	Bromo 1.				interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			CTACTCACAGGGAGGTTCAGC	0.592			T	NUT|C15orf55	lethal midline carcinoma of young people								6	24					0	0	1	0	0
WIZ	58525	broad.mit.edu	37	19	15535087	15535087	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15535087G>A	uc002nbc.2	-	7	2677	c.2654C>T	c.(2653-2655)CCA>CTA	p.P885L	WIZ_uc002nba.3_Missense_Mutation_p.P752L|WIZ_uc002nbb.3_Missense_Mutation_p.P711L	NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	1568						nucleus	zinc ion binding				0						GACTCGGGGTGGGGGTTGCCG	0.647													10	30					0	0	1	0	0
WIZ	58525	broad.mit.edu	37	19	15547702	15547702	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15547702G>A	uc002nbb.3	-	3	658	c.444C>T	c.(442-444)TTC>TTT	p.F148F		NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						nucleus	zinc ion binding				0						GGGAGGTCAGGAAGCTGCCAG	0.682													7	29					0	0	1	0	0
RASAL3	64926	broad.mit.edu	37	19	15562664	15562664	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15562664C>T	uc002nbe.2	-	18	3064	c.2978G>A	c.(2977-2979)GGG>GAG	p.G993E	WIZ_uc002nbb.3_5'Flank|RASAL3_uc002nbd.2_3'UTR|RASAL3_uc010eaa.1_Missense_Mutation_p.G407E	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	993					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						ACTCCAAGACCCCCGCGTCCT	0.607													30	57					0	0	1	0	0
RASAL3	64926	broad.mit.edu	37	19	15565261	15565261	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15565261G>A	uc002nbe.2	-	13	2157	c.2071C>T	c.(2071-2073)CCC>TCC	p.P691S	RASAL3_uc002nbd.2_Missense_Mutation_p.P31S|RASAL3_uc010eaa.1_Missense_Mutation_p.P179S	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	691					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						TAACCACTGGGGGCAGCATCC	0.557											OREG0025322	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	38					0	0	1	0	0
RASAL3	64926	broad.mit.edu	37	19	15567435	15567435	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15567435G>A	uc002nbe.2	-	10	1540	c.1454C>T	c.(1453-1455)ACT>ATT	p.T485I	RASAL3_uc002nbd.2_5'Flank|RASAL3_uc010eaa.1_5'UTR	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	485	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						CAGCTCCGCAGTGCCCAGGTC	0.607													7	17					0	0	1	0	0
RASAL3	64926	broad.mit.edu	37	19	15571068	15571068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15571068C>T	uc002nbe.2	-	6	694	c.608G>A	c.(607-609)GGG>GAG	p.G203E		NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	203	PH.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						CTTGAGCAACCCCTGTGGGGA	0.572													5	13					0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15579516	15579516	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15579516C>T	uc002nbf.3	-	5	1822	c.1689G>A	c.(1687-1689)AGG>AGA	p.R563R		NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	563					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						GGGGTGGCTCCCTCCTGGATC	0.488													19	65					0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15580492	15580492	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15580492G>A	uc002nbf.3	-	4	1725	c.1592C>T	c.(1591-1593)CCC>CTC	p.P531L	PGLYRP2_uc002nbg.3_Missense_Mutation_p.P531L	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	531					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CGCGTCGCCGGGGCAGTCGGT	0.726													5	12					0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15580660	15580660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15580660G>A	uc002nbf.3	-	4	1557	c.1424C>T	c.(1423-1425)TCC>TTC	p.S475F	PGLYRP2_uc002nbg.3_Missense_Mutation_p.S475F	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	475					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						GAAGCCCCGGGAGTTGTGGCC	0.706													4	11					0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15582830	15582830	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15582830C>T	uc002nbf.3	-	3	1347	c.1214G>A	c.(1213-1215)GGA>GAA	p.G405E	PGLYRP2_uc002nbg.3_Missense_Mutation_p.G405E	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	405					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						GTACAAGAATCCCAGCGGCAG	0.672													13	38					0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15586491	15586491	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15586491G>A	uc002nbf.3	-	2	1123	c.990C>T	c.(988-990)TCC>TCT	p.S330S	PGLYRP2_uc002nbg.3_Silent_p.S330S	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	330					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						GGGCCAGGATGGAGGCTGAAG	0.617													16	40					0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15587019	15587019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15587019G>A	uc002nbf.3	-	2	595	c.462C>T	c.(460-462)ACC>ACT	p.T154T	PGLYRP2_uc002nbg.3_Silent_p.T154T	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	154					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CATCTGGAAAGGTATCTCCAG	0.587													17	82					0	0	1	0	0
CYP4F22	126410	broad.mit.edu	37	19	15636352	15636352	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15636352C>T	uc002nbh.3	+	3	372	c.205C>T	c.(205-207)CTG>TTG	p.L69L		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	69						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						CAACTGGCTGCTGGGCCACCT	0.542													17	37					0	0	1	0	0
CYP4F22	126410	broad.mit.edu	37	19	15651288	15651288	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15651288C>T	uc002nbh.3	+	8	866	c.699C>T	c.(697-699)ATC>ATT	p.I233I		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	233						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						TCTCCGCTATCATTGAACTGA	0.557													28	75					0	0	1	0	0
CYP4F22	126410	broad.mit.edu	37	19	15654992	15654992	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15654992G>A	uc002nbh.3	+	10	1205	c.1038G>A	c.(1036-1038)TGG>TGA	p.W346*		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	346						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						GGATCTCTTGGATGCTGTTCA	0.507													39	105					0	0	1	0	0
CYP4F22	126410	broad.mit.edu	37	19	15655019	15655019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15655019G>A	uc002nbh.3	+	10	1232	c.1065G>A	c.(1063-1065)CCG>CCA	p.P355P		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	355						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						CAAAGTATCCGGAATACCAGG	0.453													39	75					0	0	1	0	0
CYP4F8	11283	broad.mit.edu	37	19	15726582	15726582	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15726582C>T	uc002nbi.2	+	2	219	c.155C>T	c.(154-156)CCG>CTG	p.P52L	CYP4F8_uc010xoi.1_Missense_Mutation_p.P52L|CYP4F8_uc010xoj.1_Missense_Mutation_p.R14C	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	52					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						CGGTGTTTCCCGCAGCCCCGG	0.642													8	118					0	0	1	0	0
CYP4F8	11283	broad.mit.edu	37	19	15734018	15734018	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15734018C>T	uc002nbi.2	+	9	815	c.751C>T	c.(751-753)CCC>TCC	p.P251S	CYP4F8_uc010xoj.1_Missense_Mutation_p.P63S	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	251					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						CTTCCTCACTCCCTGTGGACG	0.562													32	58					0	0	1	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739639	15739639	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15739639C>T	uc002nbi.2	+	14	1447	c.1383C>T	c.(1381-1383)TTC>TTT	p.F461F	CYP4F8_uc010xoj.1_Silent_p.F273F	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	461					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						TTATTCCTTTCTCGGCGGGGC	0.597													28	85					0	0	1	0	0
CYP4F3	4051	broad.mit.edu	37	19	15756582	15756582	+	Silent	SNP	C	T	T	rs148575704	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15756582C>T	uc002nbj.2	+	3	302	c.252C>T	c.(250-252)TTC>TTT	p.F84F	CYP4F3_uc010xok.1_Intron|CYP4F3_uc010xol.1_Intron|CYP4F3_uc010xom.1_Intron|CYP4F3_uc002nbk.2_Intron	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	84					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding	p.F84F(1)		ovary(3)	3						CATGCACCTTCGGTGATATGT	0.557													34	76					0	0	1	0	0
CYP4F3	4051	broad.mit.edu	37	19	15756611	15756611	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15756611C>T	uc002nbj.2	+	3	331	c.281C>T	c.(280-282)CCC>CTC	p.P94L	CYP4F3_uc010xok.1_Intron|CYP4F3_uc010xol.1_Intron|CYP4F3_uc010xom.1_Intron|CYP4F3_uc002nbk.2_Intron	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	94					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						TGGGTGGGGCCCTGGCACGCA	0.567													27	58					0	0	1	0	0
CYP4F3	4051	broad.mit.edu	37	19	15756624	15756624	+	Silent	SNP	C	T	T	rs116936513	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15756624C>T	uc002nbj.2	+	3	344	c.294C>T	c.(292-294)ATC>ATT	p.I98I	CYP4F3_uc010xok.1_Intron|CYP4F3_uc010xol.1_Intron|CYP4F3_uc010xom.1_Intron|CYP4F3_uc002nbk.2_Intron	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	98					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						GGCACGCAATCGTCCGCATCT	0.582													21	43					0	0	1	0	0
CYP4F3	4051	broad.mit.edu	37	19	15756644	15756644	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15756644C>T	uc002nbj.2	+	3	364	c.314C>T	c.(313-315)ACC>ATC	p.T105I	CYP4F3_uc010xok.1_Intron|CYP4F3_uc010xol.1_Intron|CYP4F3_uc010xom.1_Intron|CYP4F3_uc002nbk.2_Intron	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	105					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						TTCCACCCCACCTACATCAAG	0.592													19	34					0	0	1	0	0
CYP4F3	4051	broad.mit.edu	37	19	15758113	15758113	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15758113T>A	uc002nbj.2	+	5	554	c.504T>A	c.(502-504)AAT>AAA	p.N168K	CYP4F3_uc010xok.1_Missense_Mutation_p.N168K|CYP4F3_uc010xol.1_Missense_Mutation_p.N168K|CYP4F3_uc010xom.1_Missense_Mutation_p.N19K|CYP4F3_uc002nbk.2_Missense_Mutation_p.N168K|CYP4F3_uc010xon.1_5'Flank	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	168					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						AGATTTTCAATGAGAGTGTGA	0.453													24	167					0	0	1	0	0
CYP4F3	4051	broad.mit.edu	37	19	15760766	15760766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15760766C>T	uc002nbj.2	+	7	741	c.691C>T	c.(691-693)CTT>TTT	p.L231F	CYP4F3_uc010xok.1_Missense_Mutation_p.L231F|CYP4F3_uc010xol.1_Missense_Mutation_p.L231F|CYP4F3_uc010xom.1_Missense_Mutation_p.L82F|CYP4F3_uc002nbk.2_Missense_Mutation_p.L231F|CYP4F3_uc010xon.1_5'Flank	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	231					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						GCTCAGTGCCCTTGTGACAAA	0.527													76	154					0	0	1	0	0
CYP4F3	4051	broad.mit.edu	37	19	15760906	15760906	+	Silent	SNP	C	T	T	rs28371480	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15760906C>T	uc002nbj.2	+	7	881	c.831C>T	c.(829-831)ACC>ACT	p.T277T	CYP4F3_uc010xok.1_Silent_p.T277T|CYP4F3_uc010xol.1_Silent_p.T277T|CYP4F3_uc010xom.1_Silent_p.T128T|CYP4F3_uc002nbk.2_Silent_p.T277T|CYP4F3_uc010xon.1_5'UTR	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	277					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						GGCGCCGCACCCTCCCTAGCC	0.582													20	134					0	0	1	0	0
CYP4F3	4051	broad.mit.edu	37	19	15770051	15770051	+	Silent	SNP	C	T	T	rs140820169	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15770051C>T	uc002nbj.2	+	13	1469	c.1419C>T	c.(1417-1419)TTC>TTT	p.F473F	CYP4F3_uc010xok.1_Silent_p.F473F|CYP4F3_uc010xol.1_Silent_p.F473F|CYP4F3_uc010xom.1_Silent_p.F324F|CYP4F3_uc002nbk.2_Silent_p.F473F|CYP4F3_uc010xon.1_Silent_p.F183F	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	473					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						GGCAGGCGTTCGCGATGGCGG	0.672													19	25					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15793285	15793285	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15793285G>A	uc002nbl.2	+	6	673	c.612G>A	c.(610-612)CAG>CAA	p.Q204Q		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					ACAGTCTACAGAAATGCATCT	0.532													39	146					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15795653	15795653	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15795653G>A	uc002nbl.2	+	8	1007	c.946G>A	c.(946-948)GAG>AAG	p.E316K		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					ATTGTCAGATGAGGATATAAG	0.388													18	80					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15806999	15806999	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15806999G>A	uc002nbl.2	+	11	1339	c.1278G>A	c.(1276-1278)GGG>GGA	p.G426G		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					ATATTATAGGGGTCCATCACA	0.552													40	106					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15807281	15807281	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15807281G>A	uc002nbl.2	+	12	1417	c.1356G>A	c.(1354-1356)GGG>GGA	p.G452G		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					ACAGCAAGGGGAGGTCACCTC	0.552													49	170					0	0	1	0	0
OR10H2	26538	broad.mit.edu	37	19	15839269	15839269	+	Missense_Mutation	SNP	G	A	A	rs142766169	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15839269G>A	uc002nbm.2	+	1	436	c.416G>A	c.(415-417)CGG>CAG	p.R139Q		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					ATGAGCCCACGGGGCTGCGCC	0.632													25	63					0	0	1	0	0
OR10H2	26538	broad.mit.edu	37	19	15839623	15839623	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15839623C>T	uc002nbm.2	+	1	790	c.770C>T	c.(769-771)TCT>TTT	p.S257F		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					GGCTTTGCCTCTGTCATCTAC	0.562													29	111					0	0	1	0	0
OR10H3	26532	broad.mit.edu	37	19	15852698	15852698	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15852698C>T	uc010xoq.1	+	1	496	c.496C>T	c.(496-498)CAC>TAC	p.H166Y		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GATGGTTTTTCACCTCACTTT	0.502													46	98					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	15881966	15881966	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15881966G>A	uc002nbo.2	-	6		c.932C>T			uc010xor.1_Silent_p.L137L					Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		CGTCATGGGAGAGGTAATACA	0.557													30	72					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	15885110	15885110	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15885110G>A	uc002nbo.2	-	2		c.313C>T			uc010xor.1_Silent_p.F15F					Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		AGGGCTTCAGGAACCTGATGG	0.577													44	83					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	15890615	15890615	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15890615G>A	uc002nbo.2	-	1		c.183C>T								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		ATAGGTCCAGGCCAGGAAGCC	0.627													13	46					0	0	1	0	0
OR10H5	284433	broad.mit.edu	37	19	15904925	15904925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15904925C>T	uc010xos.1	+	1	67	c.67C>T	c.(67-69)CTC>TTC	p.L23F		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTTCCCCCACCTCCAGCTGAT	0.587													60	178					0	0	1	0	0
OR10H5	284433	broad.mit.edu	37	19	15905626	15905626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15905626C>T	uc010xos.1	+	1	768	c.768C>T	c.(766-768)GCC>GCT	p.A256A		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATGGCTTTGCCTCCGTCATTT	0.572													18	50					0	0	1	0	0
OR10H5	284433	broad.mit.edu	37	19	15905628	15905628	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15905628C>T	uc010xos.1	+	1	770	c.770C>T	c.(769-771)TCC>TTC	p.S257F		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGCTTTGCCTCCGTCATTTAC	0.572													18	51					0	0	1	0	0
OR10H5	284433	broad.mit.edu	37	19	15905667	15905667	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15905667A>T	uc010xos.1	+	1	809	c.809A>T	c.(808-810)GAA>GTA	p.E270V		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CAGTCTCCGGAAGGAGACACC	0.567													30	53					0	0	1	0	0
OR10H1	26539	broad.mit.edu	37	19	15918200	15918200	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15918200G>A	uc002nbq.2	-	1	737	c.648C>T	c.(646-648)CTC>CTT	p.L216L		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATAGGAGAGGAGGATGAGGA	0.577													21	66					0	0	1	0	0
OR10H1	26539	broad.mit.edu	37	19	15918696	15918696	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15918696C>T	uc002nbq.2	-	1	241	c.152G>A	c.(151-153)AGC>AAC	p.S51N		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCTGCGCTCGCTCCAGACGGT	0.622													36	69					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	15989593	15989593	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15989593C>T	uc002nbs.1	-	13	1601	c.1551G>A	c.(1549-1551)GAG>GAA	p.E517E	CYP4F2_uc010xot.1_Silent_p.E368E	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	517					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						AGCTCAGGGGCTCCACCCGCA	0.507													15	33					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	15990197	15990197	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15990197C>T	uc002nbs.1	-	12	1406	c.1356G>A	c.(1354-1356)GAG>GAA	p.E452E	CYP4F2_uc010xot.1_Silent_p.E303E	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	452					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GAGGTGACCTCTCCTTGATGT	0.602													65	186					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	15990683	15990683	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15990683G>A	uc002nbs.1	-	10	1190	c.1140C>T	c.(1138-1140)TTC>TTT	p.F380F	CYP4F2_uc010xot.1_Silent_p.F231F	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	380					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						ACATGGTCAGGAAGGGCAAAT	0.577													59	129					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	15996760	15996760	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:15996760C>T	uc002nbs.1	-	9	1139	c.1089G>A	c.(1087-1089)AAG>AAA	p.K363K	CYP4F2_uc010xot.1_Silent_p.K214K|CYP4F2_uc010xou.1_3'UTR	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	363					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GCTCACGGTCCTTCAGAAGTT	0.577													32	79					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	16000301	16000301	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16000301C>T	uc002nbs.1	-	7	900	c.850G>A	c.(850-852)GAT>AAT	p.D284N	CYP4F2_uc010xot.1_Missense_Mutation_p.D135N|CYP4F2_uc010xou.1_Missense_Mutation_p.D135N	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	284					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						AGGAAGTCATCAACACCCTGG	0.577													35	127					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	16000416	16000416	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16000416G>A	uc002nbs.1	-	7	785	c.735C>T	c.(733-735)TTC>TTT	p.F245F	CYP4F2_uc010xot.1_Silent_p.F96F|CYP4F2_uc010xou.1_Silent_p.F96F	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	245					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GATAATACAGGAAGTCAATAT	0.552													70	150					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	16008341	16008341	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16008341G>A	uc002nbs.1	-	2	131	c.81C>T	c.(79-81)GCC>GCT	p.A27A	CYP4F2_uc010xot.1_Intron|CYP4F2_uc010xou.1_5'UTR	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	27					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GGAGCCAGGAGGCCCCGACCA	0.647													21	80					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16025627	16025627	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16025627G>A	uc002nbu.2	-	10	1230	c.1194C>T	c.(1192-1194)ATC>ATT	p.I398I	CYP4F11_uc010eab.1_Silent_p.I398I|CYP4F11_uc002nbt.2_Silent_p.I398I	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	398					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						AACATCGGGAGATGACCGGGA	0.627													21	126					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16032908	16032908	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16032908C>T	uc002nbu.2	-	9	1090	c.1054G>A	c.(1054-1056)GAA>AAA	p.E352K	CYP4F11_uc010eab.1_Missense_Mutation_p.E352K|CYP4F11_uc002nbt.2_Missense_Mutation_p.E352K	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	352					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CGGCACTGTTCCTGGTATTCT	0.522													30	52					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16033188	16033188	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16033188G>A	uc002nbu.2	-	8	1007	c.971C>T	c.(970-972)ACC>ATC	p.T324I	CYP4F11_uc010eab.1_Missense_Mutation_p.T324I|CYP4F11_uc002nbt.2_Missense_Mutation_p.T324I	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	324					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						AAACATGAAGGTGTCAGCTTC	0.527													59	163					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16034646	16034646	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16034646G>A	uc002nbu.2	-	7	930	c.894C>T	c.(892-894)TTC>TTT	p.F298F	CYP4F11_uc010eab.1_Silent_p.F298F|CYP4F11_uc002nbt.2_Silent_p.F298F	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	298					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GCACATCAATGAAGTCTAAAG	0.463													50	167					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16035627	16035627	+	Silent	SNP	G	A	A	rs149071621	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16035627G>A	uc002nbu.2	-	6	627	c.591C>T	c.(589-591)CTC>CTT	p.L197L	CYP4F11_uc010eab.1_Silent_p.L197L|CYP4F11_uc002nbt.2_Silent_p.L197L	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	197					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CCAAGGTCATGAGGCTGATGT	0.527													41	75					0	0	1	0	0
OR10H4	126541	broad.mit.edu	37	19	16059904	16059904	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16059904C>T	uc010xov.1	+	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCATCTTGTTCCTGCTGTACC	0.483													96	245					0	0	1	0	0
OR10H4	126541	broad.mit.edu	37	19	16060098	16060099	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16060098_16060099CC>TT	uc010xov.1	+	1	281_282	c.281_282CC>TT	c.(280-282)ACC>ATT	p.T94I		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CATTCCATCACCTTTGTGGCTT	0.51													95	303					0	0	1	0	0
OR10H4	126541	broad.mit.edu	37	19	16060702	16060702	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16060702G>A	uc010xov.1	+	1	885	c.885G>A	c.(883-885)AGG>AGA	p.R295R		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TCAGCCTAAGGAACAAGGAGC	0.438													69	104					0	0	1	0	0
LOC126536	126536	broad.mit.edu	37	19	16131426	16131426	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16131426C>T	uc002nbw.2	+	3		c.257C>T			LOC126536_uc010xow.1_5'Flank|LOC126536_uc002nca.2_5'Flank|LOC126536_uc002ncb.1_5'Flank	NR_026828				Homo sapiens cDNA FLJ46374 fis, clone TESTI4052217.												0						CATCAGTGCCCTGGAAGTGAA	0.627													12	29					0	0	1	0	0
LOC126536	126536	broad.mit.edu	37	19	16131429	16131429	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16131429G>A	uc002nbw.2	+	3		c.260G>A			LOC126536_uc010xow.1_5'Flank|LOC126536_uc002nca.2_5'Flank|LOC126536_uc002ncb.1_5'Flank	NR_026828				Homo sapiens cDNA FLJ46374 fis, clone TESTI4052217.												0						CAGTGCCCTGGAAGTGAAGGT	0.622													13	28					0	0	1	0	0
CIB3	117286	broad.mit.edu	37	19	16275561	16275561	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16275561C>T	uc002nds.2	-	5	510	c.510G>A	c.(508-510)CAG>CAA	p.Q170Q	CIB3_uc010eae.2_Silent_p.Q109Q|CIB3_uc010eaf.2_RNA|CIB3_uc010eag.2_Silent_p.Q121Q	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	170	EF-hand 3.						calcium ion binding			ovary(1)	1						GGATCATGTTCTGGAAATCTT	0.587													10	53					0	0	1	0	0
CIB3	117286	broad.mit.edu	37	19	16280507	16280507	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16280507G>A	uc002nds.2	-	3	132	c.132C>T	c.(130-132)CTC>CTT	p.L44L	CIB3_uc010eae.2_5'UTR|CIB3_uc010eaf.2_Intron|CIB3_uc010eag.2_Intron	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	44							calcium ion binding			ovary(1)	1						TGGTATAGTCGAGGGGCACGA	0.587													6	35					0	0	1	0	0
MED26	9441	broad.mit.edu	37	19	16686990	16686990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16686990C>T	uc002nen.1	-	3	1912	c.1651G>A	c.(1651-1653)GAT>AAT	p.D551N	MED26_uc002nee.2_Intron	NM_004831	NP_004822	O95402	MED26_HUMAN	mediator complex subunit 26	551					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|RNA polymerase II transcription cofactor activity|transcription coactivator activity			ovary(2)	2						CTGTCGAGATCGTCCTGTGTG	0.642													24	59					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16859997	16859997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16859997G>A	uc002neu.3	+	6	966	c.544G>A	c.(544-546)GAA>AAA	p.E182K	NWD1_uc002net.3_Missense_Mutation_p.E47K|NWD1_uc002nev.3_5'UTR			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	182							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						AGAGGACCGGGAACAGGGAGC	0.572													19	48					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16860201	16860201	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16860201T>C	uc002neu.3	+	6	1170	c.748T>C	c.(748-750)TTG>CTG	p.L250L	NWD1_uc002net.3_Silent_p.L115L|NWD1_uc002nev.3_Silent_p.L44L			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	250							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAGCCGCGACTTGGTGAACCC	0.597													21	47					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16860848	16860848	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16860848C>T	uc002neu.3	+	6	1817	c.1395C>T	c.(1393-1395)ATC>ATT	p.I465I	NWD1_uc002net.3_Silent_p.I330I|NWD1_uc002nev.3_Silent_p.I259I			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	465	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TGCACCTCATCCTCTCAGCTT	0.642													8	124					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16860953	16860953	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16860953C>T	uc002neu.3	+	6	1922	c.1500C>T	c.(1498-1500)GGC>GGT	p.G500G	NWD1_uc002net.3_Silent_p.G365G|NWD1_uc002nev.3_Silent_p.G294G			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	500	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAAACCAAGGCCAGCAGATGA	0.637													9	83					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16861084	16861084	+	Missense_Mutation	SNP	G	A	A	rs148029259	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16861084G>A	uc002neu.3	+	6	2053	c.1631G>A	c.(1630-1632)CGG>CAG	p.R544Q	NWD1_uc002net.3_Missense_Mutation_p.R409Q|NWD1_uc002nev.3_Missense_Mutation_p.R338Q			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	544	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAGGAAGCCCGGAAATGGGCC	0.662													18	43					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16870169	16870169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16870169C>T	uc002neu.3	+	7	2325	c.1903C>T	c.(1903-1905)CGT>TGT	p.R635C	NWD1_uc002net.3_Missense_Mutation_p.R500C|NWD1_uc002nev.3_Missense_Mutation_p.R429C			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	635	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GGTGCGGCTTCGTCGGGATCT	0.652													8	15					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16875962	16875962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16875962C>T	uc002neu.3	+	10	2791	c.2369C>T	c.(2368-2370)GCC>GTC	p.A790V	NWD1_uc002net.3_Missense_Mutation_p.A655V|NWD1_uc002nev.3_Missense_Mutation_p.A584V			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	790							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GTCCGTGAAGCCCTCCAGCTC	0.617													16	30					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16908679	16908680	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16908679_16908680CC>TT	uc002neu.3	+	16	3863_3864	c.3441_3442CC>TT	c.(3439-3444)TCCCTT>TCTTTT	p.L1148F	NWD1_uc002net.3_Missense_Mutation_p.L1013F|NWD1_uc002nev.3_Missense_Mutation_p.L942F			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1148	WD 8.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TCACGGGGTCCCTTGATGCGCT	0.52													67	231					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16910720	16910720	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16910720G>A	uc002neu.3	+	17	3905	c.3483G>A	c.(3481-3483)GGG>GGA	p.G1161G	NWD1_uc002net.3_Silent_p.G1026G|NWD1_uc002nev.3_Silent_p.G955G			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1161	WD 8.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CAGAACAGGGGACCCTTCTGG	0.577													20	46					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16910722	16910722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16910722C>T	uc002neu.3	+	17	3907	c.3485C>T	c.(3484-3486)ACC>ATC	p.T1162I	NWD1_uc002net.3_Missense_Mutation_p.T1027I|NWD1_uc002nev.3_Missense_Mutation_p.T956I			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1162	WD 8.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAACAGGGGACCCTTCTGGAC	0.582													9	60					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16910772	16910772	+	Missense_Mutation	SNP	C	T	T	rs140495987		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16910772C>T	uc002neu.3	+	17	3957	c.3535C>T	c.(3535-3537)CGC>TGC	p.R1179C	NWD1_uc002net.3_Missense_Mutation_p.R1044C|NWD1_uc002nev.3_Missense_Mutation_p.R973C			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1179	WD 9.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CCTGCTGGCCCGCGGCGGGGC	0.622													17	63					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16918926	16918926	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16918926G>A	uc002neu.3	+	18	4688	c.4266G>A	c.(4264-4266)TGG>TGA	p.W1422*	NWD1_uc002net.3_Nonsense_Mutation_p.W1287*|NWD1_uc002nev.3_Nonsense_Mutation_p.W1216*			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1422	WD 12.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CACGCAAGTGGAAATTCGAGA	0.567													23	51					0	0	1	0	0
SIN3B	23309	broad.mit.edu	37	19	16962338	16962339	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16962338_16962339CC>TT	uc002ney.1	+	6	856_857	c.842_843CC>TT	c.(841-843)CCC>CTT	p.P281L	SIN3B_uc002new.2_Missense_Mutation_p.P281L|SIN3B_uc002nex.2_Missense_Mutation_p.P213L|SIN3B_uc002nez.1_Missense_Mutation_p.P281L	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	281					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						GTGTCTGCACCCGCCAAGGTAC	0.673													14	70					0	0	1	0	0
SIN3B	23309	broad.mit.edu	37	19	16977298	16977298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16977298C>T	uc002ney.1	+	13	1847	c.1833C>T	c.(1831-1833)TTC>TTT	p.F611F	SIN3B_uc002nez.1_Silent_p.F579F|SIN3B_uc010xpi.1_Silent_p.F169F	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	611					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						CTGTGAACTTCAAGCAGAACG	0.597													26	84					0	0	1	0	0
SIN3B	23309	broad.mit.edu	37	19	16980627	16980627	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:16980627C>T	uc002ney.1	+	14	2273	c.2259C>T	c.(2257-2259)GCC>GCT	p.A753A	SIN3B_uc002nez.1_Silent_p.A721A|SIN3B_uc010xpi.1_Silent_p.A311A	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	753					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						ATGCCCCGGCCACTGAGCAGC	0.662													19	41					0	0	1	0	0
F2RL3	9002	broad.mit.edu	37	19	17001309	17001309	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17001309C>T	uc002nfa.2	+	2	1210	c.1035C>T	c.(1033-1035)GCC>GCT	p.A345A		NM_003950	NP_003941	Q96RI0	PAR4_HUMAN	coagulation factor II (thrombin) receptor-like 3	345	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation|positive regulation of release of sequestered calcium ion into cytosol	extracellular region|integral to plasma membrane	thrombin receptor activity				0						ACGTGTCGGCCGAGTTCAGGG	0.672													6	31					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17007100	17007100	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17007100C>T	uc002nfb.2	-	41	5486	c.5454G>A	c.(5452-5454)GGG>GGA	p.G1818G	CPAMD8_uc010xpj.1_5'UTR|CPAMD8_uc002nfd.1_Silent_p.G283G	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1771						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCAGGTCATCCCCGTAGGTGG	0.692													11	22					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17010355	17010355	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17010355G>A	uc002nfb.2	-	37	4952	c.4920C>T	c.(4918-4920)CTC>CTT	p.L1640L	CPAMD8_uc010xpj.1_5'Flank|CPAMD8_uc002nfd.1_Silent_p.L105L	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1593						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GCTTGTCAAGGAGCAGCTGCA	0.577													15	42					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17012086	17012086	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17012086G>A	uc002nfb.2	-	36	4880	c.4848C>T	c.(4846-4848)TCC>TCT	p.S1616S	CPAMD8_uc002nfd.1_Silent_p.S81S	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1569						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CAGCCATATTGGAAGACCCTG	0.637													4	21					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17013509	17013509	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17013509C>T	uc002nfb.2	-	35	4808	c.4776G>A	c.(4774-4776)GCG>GCA	p.A1592A	CPAMD8_uc002nfd.1_Silent_p.A57A	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1545						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GCTGATCGGCCGCTGGGTCAT	0.662													11	41					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17015315	17015315	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17015315C>T	uc002nfb.2	-	31	4248	c.4216G>A	c.(4216-4218)GGC>AGC	p.G1406S	CPAMD8_uc002nfd.1_5'Flank	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1359						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						AAGAATGTGCCCTTGTCCACG	0.582													33	74					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17017874	17017874	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17017874G>A	uc002nfb.2	-	30	4088	c.4056C>T	c.(4054-4056)CCC>CCT	p.P1352P		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1305						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCATGGCCAGGGGCGCAGCAG	0.662													8	18					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17038904	17038904	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17038904C>T	uc002nfb.2	-	25	3458	c.3426G>A	c.(3424-3426)GTG>GTA	p.V1142V		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1095						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						AGCTCTCGTCCACCTCCATCT	0.642													24	62					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17088210	17088210	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17088210G>A	uc002nfb.2	-	15	1899	c.1867C>T	c.(1867-1869)CAG>TAG	p.Q623*		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	576						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						ACTGCAAACTGAAGGCTGTCG	0.602													28	72					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17091331	17091331	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17091331G>A	uc002nfb.2	-	14	1734	c.1702C>T	c.(1702-1704)CGT>TGT	p.R568C		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	521						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TGTGTTAAACGAATCGGTTTC	0.592													16	77					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17104307	17104307	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17104307G>A	uc002nfb.2	-	12	1358	c.1326C>T	c.(1324-1326)ACC>ACT	p.T442T		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	395						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CAACTTCACTGGTGTAGATGT	0.577													12	46					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17104380	17104380	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17104380G>A	uc002nfb.2	-	12	1285	c.1253C>T	c.(1252-1254)CCC>CTC	p.P418L		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	371						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GCTGCCATCGGGGTAGGATAG	0.363													15	55					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17107960	17107960	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17107960C>T	uc002nfb.2	-	11	1229	c.1197G>A	c.(1195-1197)ACG>ACA	p.T399T		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	352						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						ACTGCTTCCTCGTGTCCTTGG	0.637													24	40					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17122442	17122442	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17122442G>A	uc002nfb.2	-	4	566	c.534C>T	c.(532-534)TTC>TTT	p.F178F		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	131						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCGTCTGGATGAATACAGAAG	0.657													44	113					0	0	1	0	0
MYO9B	4650	broad.mit.edu	37	19	17311449	17311449	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17311449C>T	uc010eak.2	+	26	4526	c.4374C>T	c.(4372-4374)GCC>GCT	p.A1458A	MYO9B_uc002nfi.2_Silent_p.A1458A|MYO9B_uc002nfj.1_Silent_p.A1458A|MYO9B_uc002nfl.1_Silent_p.A7A	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1458	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						CCCCCTCAGCCCCCTCCGGAC	0.612													8	15					0	0	1	0	0
MYO9B	4650	broad.mit.edu	37	19	17317979	17317979	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17317979C>T	uc010eak.2	+	35	5702	c.5550C>T	c.(5548-5550)TTC>TTT	p.F1850F	MYO9B_uc002nfi.2_Silent_p.F1850F|MYO9B_uc002nfj.1_Silent_p.F1850F|MYO9B_uc002nfm.1_Silent_p.F10F	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1850	Rho-GAP.|Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						CCATTATCTTCGCACCCTGCC	0.647													5	4					0	0	1	0	0
MYO9B	4650	broad.mit.edu	37	19	17322773	17322773	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17322773C>T	uc010eak.2	+	40	6280	c.6128C>T	c.(6127-6129)CCT>CTT	p.P2043L	MYO9B_uc002nfi.2_3'UTR|MYO9B_uc002nfm.1_3'UTR	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	2043	Tail.			TVAAPP -> PWPPLH (in Ref. 3; AAC26597).	actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						GTGGCCGCCCCTCCACGACGA	0.692													7	8					0	0	1	0	0
USHBP1	83878	broad.mit.edu	37	19	17361191	17361191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17361191C>T	uc002nfs.1	-	13	2068	c.1955G>A	c.(1954-1956)CGG>CAG	p.R652Q	USHBP1_uc002nfr.1_Missense_Mutation_p.R278Q|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.R588Q	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	652	Potential.						PDZ domain binding			ovary(1)	1						TTCCTGCTTCCGGTGGGCTCC	0.667													23	46					0	0	1	0	0
USHBP1	83878	broad.mit.edu	37	19	17373487	17373487	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17373487C>T	uc002nfs.1	-	4	629	c.516G>A	c.(514-516)GAG>GAA	p.E172E	USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Silent_p.E108E|USHBP1_uc010eam.1_Silent_p.E100E	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	172							PDZ domain binding			ovary(1)	1						GGCGAGCTGCCTCTCGCTGGC	0.677													11	114					0	0	1	0	0
USHBP1	83878	broad.mit.edu	37	19	17375071	17375071	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17375071C>T	uc002nfs.1	-	2	151	c.38G>A	c.(37-39)GGG>GAG	p.G13E	USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_5'UTR|USHBP1_uc010eam.1_5'UTR	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	13							PDZ domain binding			ovary(1)	1						AGCATGCCTCCCTCGCCGGCT	0.657													11	23					0	0	1	0	0
C19orf62	29086	broad.mit.edu	37	19	17382414	17382414	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17382414C>T	uc002nfu.2	+	3	412	c.294C>T	c.(292-294)TGC>TGT	p.C98C	C19orf62_uc010xpl.1_Silent_p.C98C|C19orf62_uc002nfv.2_Silent_p.C98C|C19orf62_uc010ean.2_Intron|C19orf62_uc002nfw.2_Silent_p.C98C	NM_014173	NP_054892	Q9NWV8	BABA1_HUMAN	mediator of Rap80 interactions and targeting 40	98	VWFA-like.				chromatin modification|double-strand break repair|G2/M transition DNA damage checkpoint|positive regulation of DNA repair|protein K63-linked deubiquitination|response to ionizing radiation	BRCA1-A complex|BRISC complex|cytoplasm	protein binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2						AGATTATCTGCCTGGACCTGT	0.547													9	21					0	0	1	0	0
ANKLE1	126549	broad.mit.edu	37	19	17394122	17394122	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17394122C>T	uc002nga.2	+	5	825	c.549C>T	c.(547-549)GGC>GGT	p.G183G	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Silent_p.G205G|ANKLE1_uc010xpn.1_Silent_p.G237G|ANKLE1_uc002nfy.2_Silent_p.G172G|ANKLE1_uc002nfz.2_5'UTR	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	183						nuclear envelope					0						GGGACATTGGCTTGGAGGCTG	0.602													29	126					0	0	1	0	0
ANKLE1	126549	broad.mit.edu	37	19	17394451	17394451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17394451C>T	uc002nga.2	+	5	1154	c.878C>T	c.(877-879)TCC>TTC	p.S293F	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Missense_Mutation_p.S315F|ANKLE1_uc010xpn.1_Missense_Mutation_p.S347F|ANKLE1_uc002nfy.2_Missense_Mutation_p.S282F|ANKLE1_uc002nfz.2_5'UTR	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	293						nuclear envelope					0						TCCTCCCCTTCCTCCATGCCT	0.622													23	79					0	0	1	0	0
ANO8	57719	broad.mit.edu	37	19	17435792	17435792	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17435792G>A	uc002ngf.2	-	17	3224	c.3065C>T	c.(3064-3066)CCT>CTT	p.P1022L	ANO8_uc010eap.2_RNA	NM_020959	NP_066010	Q9HCE9	ANO8_HUMAN	anoctamin 8	1022	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(3)	3						GAGGAAGGCAGGCAGGCGGGT	0.672													59	140					0	0	1	0	0
ANO8	57719	broad.mit.edu	37	19	17442179	17442179	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17442179G>A	uc002ngf.2	-	6	787	c.628C>T	c.(628-630)CCT>TCT	p.P210S	ANO8_uc010eap.2_RNA	NM_020959	NP_066010	Q9HCE9	ANO8_HUMAN	anoctamin 8	210	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(3)	3						TCGTGGACAGGGAACACCTGC	0.637													17	75					0	0	1	0	0
GTPBP3	84705	broad.mit.edu	37	19	17448979	17448979	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17448979C>T	uc010eas.2	+	2	281	c.216C>T	c.(214-216)CCC>CCT	p.P72P	GTPBP3_uc010xpo.1_Silent_p.P94P|GTPBP3_uc010eaq.1_RNA|GTPBP3_uc010ear.1_RNA|GTPBP3_uc002ngh.3_Silent_p.P72P|GTPBP3_uc002ngg.3_Silent_p.P72P|GTPBP3_uc002ngi.3_5'UTR	NM_032620	NP_116009	Q969Y2	GTPB3_HUMAN	GTP binding protein 3 (mitochondrial) isoform V	72					tRNA modification	mitochondrion	GTP binding|GTPase activity			skin(1)	1						GAGACCTGCCCCTTGCTCGCC	0.711													4	16					0	0	1	0	0
GTPBP3	84705	broad.mit.edu	37	19	17449365	17449365	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17449365C>T	uc010eas.2	+	4	471	c.406C>T	c.(406-408)CGA>TGA	p.R136*	GTPBP3_uc010xpo.1_Nonsense_Mutation_p.R158*|GTPBP3_uc010ear.1_RNA|GTPBP3_uc002ngh.3_Nonsense_Mutation_p.R136*|GTPBP3_uc002ngg.3_Nonsense_Mutation_p.R136*|GTPBP3_uc002ngi.3_5'UTR	NM_032620	NP_116009	Q969Y2	GTPB3_HUMAN	GTP binding protein 3 (mitochondrial) isoform V	136					tRNA modification	mitochondrion	GTP binding|GTPase activity			skin(1)	1						GCCAGGGCTTCGACCGGCGGA	0.652													14	55					0	0	1	0	0
GTPBP3	84705	broad.mit.edu	37	19	17450006	17450006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17450006C>T	uc010eas.2	+	6	804	c.739C>T	c.(739-741)CGC>TGC	p.R247C	GTPBP3_uc010xpo.1_Missense_Mutation_p.R269C|GTPBP3_uc010ear.1_RNA|GTPBP3_uc002ngh.3_Missense_Mutation_p.R247C|GTPBP3_uc002ngg.3_Missense_Mutation_p.R279C|GTPBP3_uc002ngi.3_5'UTR	NM_032620	NP_116009	Q969Y2	GTPB3_HUMAN	GTP binding protein 3 (mitochondrial) isoform V	247					tRNA modification	mitochondrion	GTP binding|GTPase activity			skin(1)	1						GCAGAGGCTCCGCTCAGGGGT	0.662													19	30					0	0	1	0	0
GTPBP3	84705	broad.mit.edu	37	19	17452296	17452296	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17452296C>T	uc010eas.2	+	9	1328	c.1263C>T	c.(1261-1263)GAC>GAT	p.D421D	GTPBP3_uc010xpo.1_Silent_p.D443D|GTPBP3_uc002ngh.3_Silent_p.D400D|GTPBP3_uc002ngg.3_Silent_p.D453D|GTPBP3_uc002ngi.3_Silent_p.D87D	NM_032620	NP_116009	Q969Y2	GTPB3_HUMAN	GTP binding protein 3 (mitochondrial) isoform V	421					tRNA modification	mitochondrion	GTP binding|GTPase activity			skin(1)	1						GGTGTGGGGACCCGTCCACAG	0.393													21	64					0	0	1	0	0
PLVAP	83483	broad.mit.edu	37	19	17476457	17476457	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17476457C>T	uc002ngk.1	-	3	867	c.817G>A	c.(817-819)GAC>AAC	p.D273N		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	273	Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						GGCATGTGGTCGCAGGCTCTG	0.637													14	59					0	0	1	0	0
PLVAP	83483	broad.mit.edu	37	19	17487897	17487897	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17487897G>A	uc002ngk.1	-	1	251	c.201C>T	c.(199-201)GCC>GCT	p.A67A		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	67	Potential.|Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						ATAGGCCCTCGGCTCGGCGCT	0.592													11	38					0	0	1	0	0
PLVAP	83483	broad.mit.edu	37	19	17488005	17488005	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17488005G>A	uc002ngk.1	-	1	143	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	31	Helical; Signal-anchor for type II membrane protein; (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						TGAGGGAGACGAAGAGGAAGA	0.607													31	75					0	0	1	0	0
PLVAP	83483	broad.mit.edu	37	19	17488061	17488061	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17488061G>A	uc002ngk.1	-	1	87	c.37C>T	c.(37-39)CGG>TGG	p.R13W		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	13	Cytoplasmic (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						CCCCCCGCCCGAGCGTAGGAC	0.652													12	126					0	0	1	0	0
FAM129C	199786	broad.mit.edu	37	19	17652952	17652952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17652952C>T	uc010xpr.1	+	11	1409	c.1271C>T	c.(1270-1272)TCA>TTA	p.S424L	FAM129C_uc010xpq.1_Missense_Mutation_p.S424L|FAM129C_uc002ngy.3_Missense_Mutation_p.S150L|FAM129C_uc010xpu.1_Missense_Mutation_p.S150L|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Missense_Mutation_p.S150L|FAM129C_uc002nhb.2_Missense_Mutation_p.S23L	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	424											0						CAGGTTTACTCATTTGGGGAG	0.587													70	121					0	0	1	0	0
FAM129C	199786	broad.mit.edu	37	19	17660315	17660315	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17660315C>T	uc010xpr.1	+	15	1960	c.1822C>T	c.(1822-1824)CCA>TCA	p.P608S	FAM129C_uc010xpq.1_Missense_Mutation_p.P608S|FAM129C_uc002ngy.3_Missense_Mutation_p.P334S|FAM129C_uc010xpu.1_Intron|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Missense_Mutation_p.P298S	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	608											0						CTTGGAGGTCCCATGGGAACA	0.552													32	108					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17743712	17743712	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17743712C>T	uc002nhd.2	-	28	3571	c.3571G>A	c.(3571-3573)GAC>AAC	p.D1191N		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1103	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						CGATGCTTGTCGTGCTCTGGC	0.537													17	38					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17749924	17749924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17749924C>T	uc002nhd.2	-	25	3313	c.3313G>A	c.(3313-3315)GAA>AAA	p.E1105K		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1017					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						CTGTACAGTTCATGGCAGTTA	0.463													4	20					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17768936	17768936	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17768936G>A	uc002nhd.2	-	10	966	c.966C>T	c.(964-966)GGC>GGT	p.G322G		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	234					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						ACTCCCGGGAGCCCAGGGGTG	0.582													10	28					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17774359	17774359	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17774359C>T	uc002nhd.2	-	9	805	c.805G>A	c.(805-807)GGC>AGC	p.G269S		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	181					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TCACCCCAGCCAAAATAATTC	0.537													3	17					0	0	1	0	0
MAP1S	55201	broad.mit.edu	37	19	17838113	17838113	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17838113C>T	uc002nhe.1	+	5	1929	c.1920C>T	c.(1918-1920)TCC>TCT	p.S640S	MAP1S_uc010eba.1_Intron|MAP1S_uc002nhf.1_5'UTR|MAP1S_uc010xpv.1_Silent_p.S614S	NM_018174	NP_060644	Q66K74	MAP1S_HUMAN	BPY2 interacting protein 1	640	Pro-rich.|Necessary for the microtubule-organizing center localization.				apoptosis|brain development|microtubule bundle formation|mitochondrion transport along microtubule|neuron projection morphogenesis	cytosol|dendrite|microtubule|neuronal cell body|nucleus|perinuclear region of cytoplasm|spindle|synapse	actin filament binding|beta-tubulin binding|DNA binding|microtubule binding			central_nervous_system(1)	1						GCACACCCTCCCCTGAGTCCC	0.726													5	8					0	0	1	0	0
FCHO1	23149	broad.mit.edu	37	19	17886947	17886947	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17886947C>T	uc010ebb.2	+	15	1348	c.1159C>T	c.(1159-1161)CTC>TTC	p.L387F	FCHO1_uc002nhg.3_Missense_Mutation_p.L387F|FCHO1_uc002nhh.2_Missense_Mutation_p.L387F|FCHO1_uc010xpw.1_Missense_Mutation_p.L337F|FCHO1_uc002nhi.2_5'Flank|FCHO1_uc002nhj.2_5'Flank	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	387										breast(1)	1						CGCGGGCAGCCTCATCCTTCC	0.672													10	142					0	0	1	0	0
FCHO1	23149	broad.mit.edu	37	19	17892613	17892613	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17892613C>T	uc010ebb.2	+	22	2110	c.1921C>T	c.(1921-1923)CGT>TGT	p.R641C	FCHO1_uc002nhg.3_Missense_Mutation_p.R641C|FCHO1_uc002nhh.2_Missense_Mutation_p.R641C|FCHO1_uc010xpw.1_Missense_Mutation_p.R591C|FCHO1_uc002nhi.2_Missense_Mutation_p.R97C|FCHO1_uc002nhj.2_5'UTR	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	641										breast(1)	1						CGCCTACTTCCGTGGCCACAG	0.637													36	64					0	0	1	0	0
FCHO1	23149	broad.mit.edu	37	19	17895037	17895037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17895037G>A	uc010ebb.2	+	24	2408	c.2219G>A	c.(2218-2220)CGA>CAA	p.R740Q	FCHO1_uc002nhg.3_Missense_Mutation_p.R740Q|FCHO1_uc002nhh.2_Missense_Mutation_p.R740Q|FCHO1_uc010xpw.1_Missense_Mutation_p.R690Q|FCHO1_uc002nhi.2_Missense_Mutation_p.R196Q|FCHO1_uc002nhj.2_Missense_Mutation_p.R84Q	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	740										breast(1)	1						GTGCTGCTGCGATACCAGGTG	0.607											OREG0025350	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	8					0	0	1	0	0
B3GNT3	10331	broad.mit.edu	37	19	17918740	17918740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17918740G>A	uc002nhk.1	+	2	209	c.124G>A	c.(124-126)GCG>ACG	p.A42T	B3GNT3_uc002nhl.1_Missense_Mutation_p.A42T|B3GNT3_uc010ebd.1_Missense_Mutation_p.A42T|B3GNT3_uc010ebe.1_Missense_Mutation_p.A42T	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	42	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						GCAGCCACCGGCGATCCCCGA	0.677													4	51					0	0	1	0	0
B3GNT3	10331	broad.mit.edu	37	19	17922823	17922823	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17922823C>T	uc002nhk.1	+	3	1096	c.1011C>T	c.(1009-1011)TAC>TAT	p.Y337Y	B3GNT3_uc002nhl.1_Silent_p.Y337Y|B3GNT3_uc010ebd.1_Silent_p.Y337Y|B3GNT3_uc010ebe.1_Silent_p.Y337Y	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	337	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						CCTGCTTCTACCGAGACCTGC	0.612													69	170					0	0	1	0	0
JAK3	3718	broad.mit.edu	37	19	17941319	17941319	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17941319G>A	uc002nhn.3	-	22	3189	c.3089C>T	c.(3088-3090)CCC>CTC	p.P1030L	JAK3_uc010ebh.2_Intron|JAK3_uc002nho.2_Missense_Mutation_p.P1030L	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	1030	Protein kinase 2.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						CACGGCCGAGGGGCTGCAGCT	0.617		2	Mis		acute megakaryocytic leukemia|								7	17					0	0	1	0	0
JAK3	3718	broad.mit.edu	37	19	17943349	17943349	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17943349G>A	uc002nhn.3	-	19	2759	c.2659C>T	c.(2659-2661)CGT>TGT	p.R887C	JAK3_uc010ebh.2_Intron|JAK3_uc002nho.2_Missense_Mutation_p.R887C	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	887	Protein kinase 2.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						CTGACACCACGATACTTGACA	0.547		2	Mis		acute megakaryocytic leukemia|								21	108					0	0	1	0	0
SLC5A5	6528	broad.mit.edu	37	19	17986820	17986820	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:17986820C>T	uc002nhr.3	+	5	950	c.603C>T	c.(601-603)GGC>GGT	p.G201G		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	201	Helical; (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TGCTAAGTGGCTTCTGGGTTG	0.622													18	76					0	0	1	0	0
SLC5A5	6528	broad.mit.edu	37	19	18004539	18004539	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18004539C>T	uc002nhr.3	+	15	2132	c.1785C>T	c.(1783-1785)CCC>CCT	p.P595P		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	595	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						AAGAACTCCCCACTGGAAACA	0.582													10	32					0	0	1	0	0
KCNN1	3780	broad.mit.edu	37	19	18092675	18092675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18092675C>T	uc002nht.2	+	5	966	c.656C>T	c.(655-657)CCC>CTC	p.P219L	KCNN1_uc010xqa.1_Missense_Mutation_p.P219L	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	219					synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						ACGTACGCGCCCTCGGTGGCC	0.652													9	25					0	0	1	0	0
KCNN1	3780	broad.mit.edu	37	19	18092715	18092715	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18092715C>A	uc002nht.2	+	5	1006	c.696C>A	c.(694-696)ATC>ATA	p.I232I	KCNN1_uc010xqa.1_Silent_p.I232I	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	232	Helical; Name=Segment S4; (Potential).				synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						TGCTGTCCATCCCCATGTTCC	0.672													6	21					0.00198382	0.0019852	1	1	0
ARRDC2	27106	broad.mit.edu	37	19	18121442	18121442	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18121442C>T	uc002nhv.2	+	7	1217	c.1074C>T	c.(1072-1074)CCC>CCT	p.P358P	ARRDC2_uc002nhu.2_Silent_p.P353P	NM_015683	NP_056498	Q8TBH0	ARRD2_HUMAN	arrestin domain containing 2 isoform 1	358										pancreas(1)	1						GGCAGAGCCCCTTCCCGCTTC	0.632													37	78					0	0	1	0	0
IL12RB1	3594	broad.mit.edu	37	19	18170851	18170851	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18170851G>A	uc002nhw.1	-	16	1900	c.1836C>T	c.(1834-1836)TCC>TCT	p.S612S	IL12RB1_uc010xqb.1_Silent_p.S612S|IL12RB1_uc002nhx.1_Silent_p.S652S	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	612	Cytoplasmic (Potential).				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CCTCCTGCAGGGATGCCTCTT	0.607													3	17					0	0	1	0	0
IL12RB1	3594	broad.mit.edu	37	19	18170872	18170872	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18170872C>T	uc002nhw.1	-	16	1879	c.1815G>A	c.(1813-1815)GTG>GTA	p.V605V	IL12RB1_uc010xqb.1_Silent_p.V605V|IL12RB1_uc002nhx.1_Silent_p.V645V	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	605	Cytoplasmic (Potential).				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CCTGGAAGTCCACTGGGTTGA	0.592													3	18					0	0	1	0	0
IL12RB1	3594	broad.mit.edu	37	19	18182980	18182980	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18182980C>T	uc002nhw.1	-	9	1027	c.963G>A	c.(961-963)TCG>TCA	p.S321S	IL12RB1_uc010xqb.1_Silent_p.S321S|IL12RB1_uc002nhx.1_Silent_p.S361S|IL12RB1_uc002nhy.2_Silent_p.S321S	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	321	Extracellular (Potential).|Fibronectin type-III 3.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CAAATTGGTTCGAGGAGATGA	0.627													17	35					0	0	1	0	0
IL12RB1	3594	broad.mit.edu	37	19	18186640	18186640	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18186640C>T	uc002nhw.1	-	7	683	c.619G>A	c.(619-621)GAA>AAA	p.E207K	IL12RB1_uc010xqb.1_Missense_Mutation_p.E207K|IL12RB1_uc002nhx.1_Missense_Mutation_p.E247K|IL12RB1_uc002nhy.2_Missense_Mutation_p.E207K	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	207	Extracellular (Potential).|Fibronectin type-III 2.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						AGCTGGAATTCCTGGGCCACA	0.577													40	76					0	0	1	0	0
IL12RB1	3594	broad.mit.edu	37	19	18188342	18188342	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18188342C>T	uc002nhw.1	-	5	597	c.533G>A	c.(532-534)AGC>AAC	p.S178N	IL12RB1_uc010xqb.1_Missense_Mutation_p.S178N|IL12RB1_uc002nhx.1_Missense_Mutation_p.S218N|IL12RB1_uc002nhy.2_Missense_Mutation_p.S178N	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	178	Extracellular (Potential).|Fibronectin type-III 2.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CCATGGGCTGCTGGGTGTCCG	0.597													8	17					0	0	1	0	0
MPV17L2	84769	broad.mit.edu	37	19	18304780	18304780	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18304780C>T	uc002nid.2	+	2	346	c.294C>T	c.(292-294)GTC>GTT	p.V98V	MPV17L2_uc010ebj.2_Silent_p.V34V	NM_032683	NP_116072	Q567V2	M17L2_HUMAN	MPV17 mitochondrial membrane protein-like 2	98						integral to membrane					0						TCCCAAATGTCCTCAAGAAGG	0.577													21	30					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18322637	18322637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18322637C>T	uc010xqc.1	-	14	2203	c.1723G>A	c.(1723-1725)GAG>AAG	p.E575K	PDE4C_uc002nik.3_Missense_Mutation_p.E575K|PDE4C_uc002nil.3_Missense_Mutation_p.E575K|PDE4C_uc002nif.3_Missense_Mutation_p.E344K|PDE4C_uc002nig.3_Missense_Mutation_p.E290K|PDE4C_uc002nih.3_Missense_Mutation_p.E345K|PDE4C_uc010ebk.2_Missense_Mutation_p.E469K|PDE4C_uc002nii.3_Missense_Mutation_p.E543K|PDE4C_uc010ebl.2_Missense_Mutation_p.E289K	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	575					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GACTCACGCTCGCGGTCTCCC	0.627													37	74					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18330167	18330167	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18330167C>T	uc010xqc.1	-	8	1323	c.843G>A	c.(841-843)GAG>GAA	p.E281E	PDE4C_uc002nik.3_Silent_p.E281E|PDE4C_uc002nil.3_Silent_p.E281E|PDE4C_uc002nif.3_Silent_p.E50E|PDE4C_uc002nig.3_Silent_p.E51E|PDE4C_uc002nih.3_Silent_p.E51E|PDE4C_uc010ebk.2_Silent_p.E175E|PDE4C_uc002nii.3_Silent_p.E249E|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_Silent_p.E50E	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	281					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GTGGGGCCTCCTCAGCGGTCA	0.652													10	49					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18331127	18331127	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18331127G>A	uc010xqc.1	-	7	1191	c.711C>T	c.(709-711)TTC>TTT	p.F237F	PDE4C_uc002nik.3_Silent_p.F237F|PDE4C_uc002nil.3_Silent_p.F237F|PDE4C_uc002nif.3_Silent_p.F6F|PDE4C_uc002nig.3_Silent_p.F7F|PDE4C_uc002nih.3_Silent_p.F7F|PDE4C_uc010ebk.2_Silent_p.F131F|PDE4C_uc002nii.3_Silent_p.F205F|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_Silent_p.F6F|PDE4C_uc010ebm.1_RNA	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	237					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GGATCCGCTTGAACTGGGGCG	0.622													39	101					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18331249	18331249	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18331249C>T	uc010xqc.1	-	6	1152	c.672G>A	c.(670-672)CAG>CAA	p.Q224Q	PDE4C_uc002nik.3_Silent_p.Q224Q|PDE4C_uc002nil.3_Silent_p.Q224Q|PDE4C_uc002nif.3_5'UTR|PDE4C_uc002nig.3_Intron|PDE4C_uc002nih.3_Intron|PDE4C_uc010ebk.2_Silent_p.Q118Q|PDE4C_uc002nii.3_Silent_p.Q192Q|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_5'UTR|PDE4C_uc010ebm.1_RNA|PDE4C_uc002nim.1_Missense_Mutation_p.D208N	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	224					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	AGTGCCGGGTCTGCAGCGTCT	0.652													16	41					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18332967	18332967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18332967G>A	uc010xqc.1	-	2	889	c.409C>T	c.(409-411)CGG>TGG	p.R137W	PDE4C_uc002nik.3_Missense_Mutation_p.R137W|PDE4C_uc002nil.3_Missense_Mutation_p.R137W|PDE4C_uc002nif.3_5'Flank|PDE4C_uc002nig.3_5'Flank|PDE4C_uc002nih.3_5'Flank|PDE4C_uc010ebk.2_Missense_Mutation_p.R31W|PDE4C_uc002nii.3_Missense_Mutation_p.R105W|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_5'UTR|PDE4C_uc010ebm.1_5'Flank|PDE4C_uc002nim.1_Missense_Mutation_p.R137W	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	137					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GAGGAGTTCCGAGACATGGCC	0.607													23	30					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18333104	18333104	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18333104C>T	uc010xqc.1	-	2	752	c.272G>A	c.(271-273)GGG>GAG	p.G91E	PDE4C_uc002nik.3_Missense_Mutation_p.G91E|PDE4C_uc002nil.3_Missense_Mutation_p.G91E|PDE4C_uc002nif.3_5'Flank|PDE4C_uc002nig.3_5'Flank|PDE4C_uc002nih.3_5'Flank|PDE4C_uc010ebk.2_5'UTR|PDE4C_uc002nii.3_Missense_Mutation_p.G59E|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_5'UTR|PDE4C_uc010ebm.1_5'Flank|PDE4C_uc002nim.1_Missense_Mutation_p.G91E	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	91					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GGCCCTCCTCCCACACGAGAG	0.637													6	65					0	0	1	0	0
KIAA1683	80726	broad.mit.edu	37	19	18368336	18368336	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18368336G>A	uc002nin.2	-	4	3413	c.3197C>T	c.(3196-3198)CCT>CTT	p.P1066L	PDE4C_uc002nil.3_5'Flank|KIAA1683_uc010ebn.2_Missense_Mutation_p.P1253L|KIAA1683_uc010xqe.1_Missense_Mutation_p.P1020L|KIAA1683_uc010xqf.1_RNA	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	1066						mitochondrion				ovary(2)	2						ACAGGTGCGAGGGCTGGAGCC	0.687													5	14					0	0	1	0	0
KIAA1683	80726	broad.mit.edu	37	19	18378199	18378199	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18378199G>A	uc002nin.2	-	3	367	c.151C>T	c.(151-153)CCT>TCT	p.P51S	KIAA1683_uc010ebn.2_Missense_Mutation_p.P51S|KIAA1683_uc010xqe.1_Missense_Mutation_p.P5S	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	51						mitochondrion				ovary(2)	2						GGCTGTGGAGGCGCTTTCTCC	0.667													48	107					0	0	1	0	0
LRRC25	126364	broad.mit.edu	37	19	18507007	18507007	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18507007C>T	uc002niw.2	-	1	1409	c.767G>A	c.(766-768)TGG>TAG	p.W256*	LRRC25_uc002nix.2_Nonsense_Mutation_p.W256*	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	256	Cytoplasmic (Potential).					integral to membrane					0						TTGTTCATCCCACTGGTGCTC	0.428													20	83					0	0	1	0	0
ISYNA1	51477	broad.mit.edu	37	19	18547253	18547253	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18547253A>T	uc002njd.1	-	6	696	c.646T>A	c.(646-648)TCT>ACT	p.S216T	ISYNA1_uc002nja.1_Missense_Mutation_p.S88T|ISYNA1_uc002njb.1_Missense_Mutation_p.S134T|ISYNA1_uc002njc.1_Missense_Mutation_p.S66T|ISYNA1_uc010xqh.1_Missense_Mutation_p.S14T|ISYNA1_uc002nje.1_Missense_Mutation_p.S162T|ISYNA1_uc002njf.1_Missense_Mutation_p.S66T	NM_016368	NP_057452	Q9NPH2	INO1_HUMAN	inositol-3-phosphate synthase 1	216					inositol biosynthetic process|phospholipid biosynthetic process	cytoplasm	binding|inositol-3-phosphate synthase activity			ovary(1)|pancreas(1)	2						CCCGCGCTAGACCGGAAGTCT	0.587													39	95					0	0	1	0	0
ELL	8178	broad.mit.edu	37	19	18572511	18572511	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18572511G>A	uc002njh.2	-	5	693	c.621C>T	c.(619-621)TTC>TTT	p.F207F	ELL_uc010ebq.2_Silent_p.F150F|ELL_uc002njg.2_Silent_p.F74F	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	207					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		CTCGGTCACGGAAGGGCCTCT	0.672			T	MLL	AL						OREG0025366	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	52					0	0	1	0	0
CRLF1	9244	broad.mit.edu	37	19	18707512	18707512	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18707512G>A	uc010ebt.1	-	6	1138	c.944C>T	c.(943-945)CCC>CTC	p.P315L		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	315	Fibronectin type-III 2.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						GATGCCAAAGGGGTTGCAGCG	0.622													7	34					0	0	1	0	0
CRLF1	9244	broad.mit.edu	37	19	18707817	18707817	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18707817C>T	uc010ebt.1	-	5	934	c.740G>A	c.(739-741)GGG>GAG	p.G247E		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	247	Fibronectin type-III 2.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						CTCCAGGCCCCCGACGCGGCT	0.662													4	39					0	0	1	0	0
TMEM59L	25789	broad.mit.edu	37	19	18731332	18731332	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18731332C>T	uc002njy.3	+	8	1102	c.1015C>T	c.(1015-1017)CTG>TTG	p.L339L		NM_012109	NP_036241	Q9UK28	TM59L_HUMAN	brain-specific membrane-anchored protein	339						Golgi membrane|integral to membrane|membrane fraction				ovary(2)|skin(2)	4						GAAGCTGGACCTGACCAAGCT	0.662													18	51					0	0	1	0	0
KLHL26	55295	broad.mit.edu	37	19	18775224	18775224	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18775224C>T	uc002njz.1	+	2	264	c.237C>T	c.(235-237)GTC>GTT	p.V79V		NM_018316	NP_060786	Q53HC5	KLH26_HUMAN	kelch-like 26	79	BTB.									ovary(1)	1						CACACAAGGTCGTCCTGGCTG	0.642													25	122					0	0	1	0	0
CRTC1	23373	broad.mit.edu	37	19	18856637	18856637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18856637C>T	uc002nkb.3	+	3	336	c.248C>T	c.(247-249)CCC>CTC	p.P83L	CRTC1_uc010ebv.2_Missense_Mutation_p.P99L|CRTC1_uc010ebw.2_5'Flank|CRTC1_uc002nkc.3_5'Flank	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	83					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						CCCCAGACCCCCTTCCAATCC	0.662													34	149					0	0	1	0	0
COMP	1311	broad.mit.edu	37	19	18893760	18893760	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18893760C>T	uc002nke.2	-	19	2275	c.2239G>A	c.(2239-2241)GAG>AAG	p.E747K	COMP_uc002nkd.2_Missense_Mutation_p.E714K|COMP_uc010xqj.1_Missense_Mutation_p.E694K	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	747	Mediates cell survival and induction of the IAP family of survival proteins.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						TCATAGTCCTCTGGGATGGTG	0.697													19	83					0	0	1	0	0
COMP	1311	broad.mit.edu	37	19	18896805	18896805	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18896805C>T	uc002nke.2	-	13	1495	c.1459G>A	c.(1459-1461)GTG>ATG	p.V487M	COMP_uc002nkd.2_Missense_Mutation_p.V454M|COMP_uc010xqj.1_Missense_Mutation_p.V434M	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	487	TSP type-3 7.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						GGGTTAGGCACCAGGCGGCAG	0.716													6	27					0	0	1	0	0
COMP	1311	broad.mit.edu	37	19	18896895	18896895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18896895C>T	uc002nke.2	-	13	1405	c.1369G>A	c.(1369-1371)GAG>AAG	p.E457K	COMP_uc002nkd.2_Missense_Mutation_p.E424K|COMP_uc010xqj.1_Missense_Mutation_p.E404K	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	457	TSP type-3 7.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						TCTGAGTCCTCCTGGGCACTG	0.602													17	29					0	0	1	0	0
COMP	1311	broad.mit.edu	37	19	18897384	18897384	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:18897384C>T	uc002nke.2	-	11	1248	c.1212G>A	c.(1210-1212)GGG>GGA	p.G404G	COMP_uc002nkd.2_Silent_p.G371G|COMP_uc010xqj.1_Silent_p.G351G	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	404	TSP type-3 5.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						CACAGGCATCCCCTATACCAT	0.582													14	54					0	0	1	0	0
SFRS14	10147	broad.mit.edu	37	19	19105985	19105985	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19105985G>A	uc002nkx.2	-	9	3242	c.3096C>T	c.(3094-3096)TCC>TCT	p.S1032S	SFRS14_uc002nkz.1_Silent_p.S1046S|SFRS14_uc002nla.1_Silent_p.S1032S|SFRS14_uc002nlb.2_Silent_p.S1032S|SFRS14_uc010xqk.1_Silent_p.S801S	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	1032	G-patch.				mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			CCTTTCCGAGGGAGCCCAGGC	0.642													13	36					0	0	1	0	0
SFRS14	10147	broad.mit.edu	37	19	19120895	19120895	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19120895G>A	uc002nkx.2	-	5	2253	c.2107C>T	c.(2107-2109)CTC>TTC	p.L703F	SFRS14_uc002nkz.1_Missense_Mutation_p.L717F|SFRS14_uc002nla.1_Missense_Mutation_p.L703F|SFRS14_uc002nlb.2_Missense_Mutation_p.L703F|SFRS14_uc010xqk.1_Missense_Mutation_p.L472F	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	703					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			GAGGATAGGAGGGTCTGGGTC	0.642													33	104					0	0	1	0	0
SFRS14	10147	broad.mit.edu	37	19	19136660	19136660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19136660G>A	uc002nkx.2	-	3	643	c.497C>T	c.(496-498)CCC>CTC	p.P166L	SFRS14_uc002nkz.1_Missense_Mutation_p.P180L|SFRS14_uc002nla.1_Missense_Mutation_p.P166L|SFRS14_uc002nlb.2_Missense_Mutation_p.P166L|SFRS14_uc010xqk.1_Intron	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	166					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			AACTGCAGAGGGACCAAAACT	0.502													37	70					0	0	1	0	0
SFRS14	10147	broad.mit.edu	37	19	19136816	19136816	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19136816G>A	uc002nkx.2	-	3	487	c.341C>T	c.(340-342)TCT>TTT	p.S114F	SFRS14_uc002nkz.1_Missense_Mutation_p.S128F|SFRS14_uc002nla.1_Missense_Mutation_p.S114F|SFRS14_uc002nlb.2_Missense_Mutation_p.S114F|SFRS14_uc010xqk.1_Missense_Mutation_p.L16F	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	114					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			ATCAGAGTGAGAAAATTCCAG	0.502													44	73					0	0	1	0	0
SLC25A42	284439	broad.mit.edu	37	19	19206957	19206957	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19206957C>T	uc002nlf.1	+	2	175	c.24C>T	c.(22-24)GGC>GGT	p.G8G	SLC25A42_uc010xqn.1_Silent_p.G60G	NM_178526	NP_848621	Q86VD7	S2542_HUMAN	solute carrier family 25, member 42	8					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.4e-06)|Epithelial(12;0.000497)			TGAAGGAAGGCCCGGTGCGAT	0.612													10	27					0	0	1	0	0
SLC25A42	284439	broad.mit.edu	37	19	19217149	19217149	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19217149C>T	uc002nlf.1	+	6	603	c.452C>T	c.(451-453)CCC>CTC	p.P151L	SLC25A42_uc010xqn.1_Missense_Mutation_p.P203L	NM_178526	NP_848621	Q86VD7	S2542_HUMAN	solute carrier family 25, member 42	151	Helical; Name=3; (Potential).|Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.4e-06)|Epithelial(12;0.000497)			CTGACCTACCCCCTGGACCTG	0.657													19	53					0	0	1	0	0
TMEM161A	54929	broad.mit.edu	37	19	19231957	19231957	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19231957G>A	uc002nlg.2	-	10	963	c.933C>T	c.(931-933)TTC>TTT	p.F311F	TMEM161A_uc010eca.2_RNA|TMEM161A_uc002nlh.2_Silent_p.F286F|TMEM161A_uc002nli.2_Silent_p.F208F|TMEM161A_uc002nlj.2_Silent_p.F186F	NM_017814	NP_060284	Q9NX61	T161A_HUMAN	transmembrane protein 161A precursor	311	Helical; (Potential).				cellular response to oxidative stress|cellular response to UV|negative regulation of apoptosis|positive regulation of DNA repair|response to retinoic acid	integral to membrane				breast(2)	2			OV - Ovarian serous cystadenocarcinoma(5;1.19e-05)|Epithelial(12;0.0011)			GCCCAGAGTCGAAGGCAGAAT	0.697													6	21					0	0	1	0	0
MEF2B	100271849	broad.mit.edu	37	19	19257422	19257422	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19257422G>A	uc002nlm.2	-	7	825	c.711C>T	c.(709-711)TCC>TCT	p.S237S	MEF2B_uc002nln.2_Missense_Mutation_p.H240Y|MEF2B_uc002nll.2_Silent_p.S237S|LOC729991-MEF2B_uc010xqo.1_Silent_p.S237S|LOC729991-MEF2B_uc010xqp.1_Silent_p.S237S|LOC729991-MEF2B_uc002nlo.2_Silent_p.S237S|LOC729991-MEF2B_uc002nlp.2_Silent_p.S237S|MEF2B_uc002nlk.2_Silent_p.S240S	NM_001145785	NP_001139257			myocyte enhancer factor 2B isoform a											skin(1)	1			OV - Ovarian serous cystadenocarcinoma(5;0.00011)|Epithelial(12;0.00412)			GAGTTGCAGTGGAGCAGGGGT	0.672													7	18					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19335212	19335212	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19335212G>A	uc002nlz.2	+	5	847	c.748G>A	c.(748-750)GAT>AAT	p.D250N	NCAN_uc010ecc.1_5'Flank	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	250	Link 1.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GGAACTCTACGATGTGTATTG	0.592													27	97					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19337321	19337321	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19337321G>A	uc002nlz.2	+	7	1198	c.1099G>A	c.(1099-1101)GAC>AAC	p.D367N	NCAN_uc010ecc.1_5'UTR	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	367					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			ACAACATGGAGACCTAGAGAC	0.577													13	91					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19337746	19337746	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19337746C>T	uc002nlz.2	+	7	1623	c.1524C>T	c.(1522-1524)GCC>GCT	p.A508A	NCAN_uc010ecc.1_Silent_p.A72A	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	508					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			AGGCCAGCGCCCAGCCCCCCA	0.652													17	28					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19339087	19339087	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19339087C>T	uc002nlz.2	+	8	2757	c.2658C>T	c.(2656-2658)GCC>GCT	p.A886A	NCAN_uc010ecc.1_Silent_p.A450A	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	886					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GAGTTCCAGCCATGTCTACAC	0.602													32	98					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19339336	19339336	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19339336C>T	uc002nlz.2	+	8	3006	c.2907C>T	c.(2905-2907)TTC>TTT	p.F969F	NCAN_uc010ecc.1_Silent_p.F533F	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	969					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			TAGAGGACTTCGAACTGGAGG	0.642													49	120					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19339423	19339423	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19339423C>T	uc002nlz.2	+	8	3093	c.2994C>T	c.(2992-2994)ACC>ACT	p.T998T	NCAN_uc010ecc.1_Silent_p.T562T	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	998					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			TGCCAGGGACCCCTATGAATG	0.577													15	54					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19349165	19349166	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19349165_19349166CC>TT	uc002nlz.2	+	11	3453_3454	c.3354_3355CC>TT	c.(3352-3357)CGCCGC>CGTTGC	p.R1119C	NCAN_uc010ecc.1_Missense_Mutation_p.R683C|NCAN_uc002nma.2_5'Flank	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1119	C-type lectin.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			ACTGCCGCCGCCGCTCCGGCCA	0.653													27	86					0	0	1	0	0
HAPLN4	404037	broad.mit.edu	37	19	19369408	19369408	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19369408C>T	uc002nmb.2	-	4	796	c.741G>A	c.(739-741)GGG>GGA	p.G247G	HAPLN4_uc002nmc.2_Silent_p.G247G	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	247	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			TGCGCAGGCCCCCGTTGGCAT	0.697													5	51					0	0	1	0	0
HAPLN4	404037	broad.mit.edu	37	19	19372292	19372292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19372292C>T	uc002nmb.2	-	2	139	c.84G>A	c.(82-84)GGG>GGA	p.G28G	HAPLN4_uc002nmc.2_Silent_p.G28G	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	28					cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			CACGCTGCGCCCCCGCAGGGG	0.726													8	51					0	0	1	0	0
TM6SF2	53345	broad.mit.edu	37	19	19375544	19375544	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19375544G>A	uc002nmd.1	-	10	1113	c.1063C>T	c.(1063-1065)CTT>TTT	p.L355F	HAPLN4_uc002nmb.2_5'Flank|HAPLN4_uc002nmc.2_Intron	NM_001001524	NP_001001524	Q9BZW4	TM6S2_HUMAN	transmembrane 6 superfamily member 2	355						integral to membrane					0			Epithelial(12;0.0151)			GGCCACTGAAGGCAACGGTAG	0.622													32	45					0	0	1	0	0
NDUFA13	51079	broad.mit.edu	37	19	19638102	19638102	+	Silent	SNP	C	T	T	rs140748603		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19638102C>T	uc010xqy.1	+	3	694	c.435C>T	c.(433-435)ATC>ATT	p.I145I	NDUFA13_uc002nms.2_Silent_p.I145I|NDUFA13_uc010xqx.1_Silent_p.I145I|YJEFN3_uc002nmt.1_5'Flank|YJEFN3_uc010ecf.1_5'Flank|YJEFN3_uc002nmu.1_5'Flank	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	62					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	GCCTACAAATCGAGGACTTCG	0.567													23	50					0	0	1	0	0
CILP2	148113	broad.mit.edu	37	19	19655181	19655181	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19655181C>T	uc002nmv.3	+	8	1912	c.1827C>T	c.(1825-1827)TTC>TTT	p.F609F	CILP2_uc002nmw.3_Silent_p.F615F	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	609						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						GGGTGACGTTCGTGGACCCCC	0.692													53	111					0	0	1	0	0
CILP2	148113	broad.mit.edu	37	19	19655781	19655781	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19655781C>T	uc002nmv.3	+	8	2512	c.2427C>T	c.(2425-2427)GTC>GTT	p.V809V	CILP2_uc002nmw.3_Silent_p.V815V	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	809						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CCGCCCTGGTCACCGCCACCC	0.746													8	15					0	0	1	0	0
CILP2	148113	broad.mit.edu	37	19	19655992	19655992	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19655992C>T	uc002nmv.3	+	8	2723	c.2638C>T	c.(2638-2640)CCG>TCG	p.P880S	CILP2_uc002nmw.3_Missense_Mutation_p.P886S	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	880						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						GCCTGTGTACCCGTGGCGCAG	0.677													19	35					0	0	1	0	0
CILP2	148113	broad.mit.edu	37	19	19656465	19656465	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19656465G>A	uc002nmv.3	+	8	3196	c.3111G>A	c.(3109-3111)CCG>CCA	p.P1037P	CILP2_uc002nmw.3_Silent_p.P1043P	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	1037						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						ACCCCCCACCGGTGCCCGCGG	0.667													5	16					0	0	1	0	0
CILP2	148113	broad.mit.edu	37	19	19656605	19656605	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19656605C>T	uc002nmv.3	+	8	3336	c.3251C>T	c.(3250-3252)TCC>TTC	p.S1084F	CILP2_uc002nmw.3_Missense_Mutation_p.S1090F	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	1084						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						TTTGATGGTTCCTCTGACGGC	0.627													9	14					0	0	1	0	0
CILP2	148113	broad.mit.edu	37	19	19656741	19656741	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19656741C>T	uc002nmv.3	+	8	3472	c.3387C>T	c.(3385-3387)ATC>ATT	p.I1129I	CILP2_uc002nmw.3_Silent_p.I1135I	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	1129						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						TTGGTGACATCCGCAGGGAGA	0.731													4	17					0	0	1	0	0
PBX4	80714	broad.mit.edu	37	19	19681534	19681534	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19681534C>T	uc002nmy.2	-	3	303	c.302G>A	c.(301-303)AGA>AAA	p.R101K	PBX4_uc010xqz.1_RNA|PBX4_uc010xra.1_5'UTR	NM_025245	NP_079521	Q9BYU1	PBX4_HUMAN	pre-B-cell leukemia homeobox 4	101							sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2						CGCTCCTCCTCTTCCTCTCTT	0.597													26	70					0	0	1	0	0
PBX4	80714	broad.mit.edu	37	19	19681593	19681593	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19681593G>A	uc002nmy.2	-	3	244	c.243C>T	c.(241-243)CTC>CTT	p.L81L	PBX4_uc010xqz.1_RNA|PBX4_uc010xra.1_5'UTR	NM_025245	NP_079521	Q9BYU1	PBX4_HUMAN	pre-B-cell leukemia homeobox 4	81							sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2						CCAGCCTCAGGAGCTGGGCGT	0.572													32	70					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19740991	19740991	+	Silent	SNP	G	A	A	rs144936310	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19740991G>A	uc002nnd.2	-	21	2811	c.2694C>T	c.(2692-2694)ACC>ACT	p.T898T	LPAR2_uc002nnb.3_5'Flank|LPAR2_uc002nna.3_5'Flank|LPAR2_uc002nnc.3_5'Flank|GMIP_uc010xrb.1_Silent_p.T872T|GMIP_uc010xrc.1_Silent_p.T869T	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	898					negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						ATGTGATGGGGGTCTCCTCGC	0.701													8	25					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19745391	19745391	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19745391G>A	uc002nnd.2	-	18	2126	c.2009C>T	c.(2008-2010)TCG>TTG	p.S670L	GMIP_uc010xrb.1_Missense_Mutation_p.S644L|GMIP_uc010xrc.1_Missense_Mutation_p.S641L	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	670	Rho-GAP.				negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						GGTCTTCAGCGAGCGGATAAC	0.602													78	138					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19746291	19746291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19746291C>T	uc002nnd.2	-	15	1610	c.1493G>A	c.(1492-1494)CGA>CAA	p.R498Q	GMIP_uc010xrb.1_Missense_Mutation_p.R472Q|GMIP_uc010xrc.1_Missense_Mutation_p.R469Q	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	498	Phorbol-ester/DAG-type.				negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						GCCCCGCAGTCGCCGCAGCTG	0.647													20	58					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19746500	19746500	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19746500G>A	uc002nnd.2	-	14	1475	c.1358C>T	c.(1357-1359)TCG>TTG	p.S453L	GMIP_uc010xrb.1_Intron|GMIP_uc010xrc.1_Intron	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	453					negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						GCCTGTGGACGAAGCCTTCAC	0.488													33	159					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19752827	19752827	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19752827G>A	uc002nnd.2	-	3	255	c.138C>T	c.(136-138)CTC>CTT	p.L46L	GMIP_uc010xrb.1_Silent_p.L46L|GMIP_uc010xrc.1_Silent_p.L46L	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	46					negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						GGTCTTCTGAGAGTAGAGGGT	0.582													10	25					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19758335	19758335	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19758335G>A	uc002nnh.3	-	21	2824	c.2796C>T	c.(2794-2796)GAC>GAT	p.D932D	ATP13A1_uc002nne.2_Silent_p.D72D|ATP13A1_uc002nnf.3_Silent_p.D300D|ATP13A1_uc002nng.2_Silent_p.D814D	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	932	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						GGCTCAGGCGGTCCTGCAGGG	0.637													10	20					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19758545	19758545	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19758545G>A	uc002nnh.3	-	20	2684	c.2656C>T	c.(2656-2658)CCT>TCT	p.P886S	ATP13A1_uc002nne.2_Missense_Mutation_p.P26S|ATP13A1_uc002nnf.3_Missense_Mutation_p.P254S|ATP13A1_uc002nng.2_Missense_Mutation_p.P768S	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	886	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						ACCCGCTCAGGGGCATTGGCC	0.682													4	6					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19760570	19760570	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19760570G>A	uc002nnh.3	-	18	2543	c.2515C>T	c.(2515-2517)CGT>TGT	p.R839C	ATP13A1_uc002nne.2_5'UTR|ATP13A1_uc002nnf.3_Missense_Mutation_p.R207C|ATP13A1_uc002nng.2_Missense_Mutation_p.R721C	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	839	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						GGAGCCACACGGGCGAACACC	0.672													19	56					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19760574	19760574	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19760574G>A	uc002nnh.3	-	18	2539	c.2511C>T	c.(2509-2511)TTC>TTT	p.F837F	ATP13A1_uc002nne.2_5'UTR|ATP13A1_uc002nnf.3_Silent_p.F205F|ATP13A1_uc002nng.2_Silent_p.F719F	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	837	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						CCACACGGGCGAACACCTGCA	0.672													10	63					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19760614	19760614	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19760614G>A	uc002nnh.3	-	18	2499	c.2471C>T	c.(2470-2472)CCC>CTC	p.P824L	ATP13A1_uc002nne.2_5'UTR|ATP13A1_uc002nnf.3_Missense_Mutation_p.P192L|ATP13A1_uc002nng.2_Missense_Mutation_p.P706L	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	824	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						CAGCTGCTGGGGGTCGGTGGC	0.687													7	40					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19760619	19760619	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19760619G>A	uc002nnh.3	-	18	2494	c.2466C>T	c.(2464-2466)ACC>ACT	p.T822T	ATP13A1_uc002nne.2_5'UTR|ATP13A1_uc002nnf.3_Silent_p.T190T|ATP13A1_uc002nng.2_Silent_p.T704T	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	822	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						GCTGGGGGTCGGTGGCCTGCA	0.687													7	36					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19760621	19760621	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19760621T>G	uc002nnh.3	-	18	2492	c.2464A>C	c.(2464-2466)ACC>CCC	p.T822P	ATP13A1_uc002nne.2_5'UTR|ATP13A1_uc002nnf.3_Missense_Mutation_p.T190P|ATP13A1_uc002nng.2_Missense_Mutation_p.T704P	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	822	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						TGGGGGTCGGTGGCCTGCAGG	0.692													7	33					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19765374	19765374	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19765374G>A	uc002nnh.3	-	13	1819	c.1791C>T	c.(1789-1791)GCC>GCT	p.A597A	ATP13A1_uc002nne.2_5'Flank|ATP13A1_uc002nnf.3_5'UTR|ATP13A1_uc002nng.2_Silent_p.A479A	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	597	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						TCCAGTCCACGGCCGTCAGCA	0.672													14	32					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19766141	19766141	+	Silent	SNP	G	A	A	rs117174741	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19766141G>A	uc002nnh.3	-	11	1546	c.1518C>T	c.(1516-1518)ATC>ATT	p.I506I	ATP13A1_uc002nnf.3_5'UTR|ATP13A1_uc002nng.2_Silent_p.I388I	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	506	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						TGGCCAGGGCGATGAGGGAGG	0.627													17	50					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19766148	19766148	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19766148G>A	uc002nnh.3	-	11	1539	c.1511C>T	c.(1510-1512)TCC>TTC	p.S504F	ATP13A1_uc002nnf.3_5'UTR|ATP13A1_uc002nng.2_Missense_Mutation_p.S386F	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	504	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						GGCGATGAGGGAGGTGTTGAC	0.637													17	46					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19766365	19766365	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19766365G>A	uc002nnh.3	-	10	1396	c.1368C>T	c.(1366-1368)ATC>ATT	p.I456I	ATP13A1_uc002nnf.3_5'Flank|ATP13A1_uc002nng.2_Silent_p.I338I	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	456	Poly-Ala.|Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						CAGCTGCAGCGATGGCAAACA	0.607													18	31					0	0	1	0	0
ZNF14	7561	broad.mit.edu	37	19	19822199	19822199	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19822199G>A	uc002nnk.1	-	4	2045	c.1891C>T	c.(1891-1893)CGA>TGA	p.R631*		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	631	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				TCATGCAGTCGAAAGTGACTG	0.393													14	127					0	0	1	0	0
ZNF14	7561	broad.mit.edu	37	19	19822367	19822367	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19822367G>A	uc002nnk.1	-	4	1877	c.1723C>T	c.(1723-1725)CGA>TGA	p.R575*		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	575	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				TCATGCATTCGAAATTTACTG	0.403													24	64					0	0	1	0	0
ZNF14	7561	broad.mit.edu	37	19	19822386	19822386	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:19822386G>A	uc002nnk.1	-	4	1858	c.1704C>T	c.(1702-1704)TTC>TTT	p.F568F		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	568	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				TGGAAGAAATGAAGGCTTTTC	0.413													29	69					0	0	1	0	0
ZNF253	56242	broad.mit.edu	37	19	20003140	20003140	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20003140C>T	uc002noj.2	+	4	1176	c.1084C>T	c.(1084-1086)CAT>TAT	p.H362Y	ZNF253_uc002nok.2_Missense_Mutation_p.H286Y|ZNF253_uc002nol.2_RNA	NM_021047	NP_066385	O75346	ZN253_HUMAN	zinc finger protein 253	362	C2H2-type 7.			Missing (in Ref. 1; AAC26844).	negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAAGATACTTCATACTGGAGA	0.383													10	90					0	0	1	0	0
ZNF93	81931	broad.mit.edu	37	19	20045034	20045034	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20045034C>T	uc002non.2	+	4	1381	c.1270C>T	c.(1270-1272)CCC>TCC	p.P424S		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	424						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						TGGAGAGAAACCCTACAAATG	0.408													21	88					0	0	1	0	0
ZNF93	81931	broad.mit.edu	37	19	20045433	20045433	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20045433A>G	uc002non.2	+	4	1780	c.1669A>G	c.(1669-1671)ATA>GTA	p.I557V		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	557	C2H2-type 15.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						TACACATAAGATACTTCATAC	0.358													23	46					0	0	1	0	0
ZNF682	91120	broad.mit.edu	37	19	20117245	20117245	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20117245G>A	uc002noq.2	-	4	1189	c.1066C>T	c.(1066-1068)CTT>TTT	p.L356F	ZNF682_uc002noo.2_Missense_Mutation_p.L324F|ZNF682_uc002nop.2_Missense_Mutation_p.L324F|ZNF682_uc010eck.2_Missense_Mutation_p.L280F	NM_033196	NP_149973	O95780	ZN682_HUMAN	zinc finger protein 682 isoform 1	356	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						TGTTCAGTAAGAATTGATGAT	0.368													21	55					0	0	1	0	0
ZNF682	91120	broad.mit.edu	37	19	20117876	20117876	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20117876G>A	uc002noq.2	-	4	558	c.435C>T	c.(433-435)TTC>TTT	p.F145F	ZNF682_uc002noo.2_Silent_p.F113F|ZNF682_uc002nop.2_Silent_p.F113F|ZNF682_uc010eck.2_Silent_p.F69F	NM_033196	NP_149973	O95780	ZN682_HUMAN	zinc finger protein 682 isoform 1	145					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						TATTATATGGGAAAATTTTGC	0.308													20	44					0	0	1	0	0
ZNF682	91120	broad.mit.edu	37	19	20117929	20117929	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20117929C>T	uc002noq.2	-	4	505	c.382G>A	c.(382-384)GAA>AAA	p.E128K	ZNF682_uc002noo.2_Missense_Mutation_p.E96K|ZNF682_uc002nop.2_Missense_Mutation_p.E96K|ZNF682_uc010eck.2_Missense_Mutation_p.E52K	NM_033196	NP_149973	O95780	ZN682_HUMAN	zinc finger protein 682 isoform 1	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						TTATAAATTTCTTTTTGATCC	0.328													25	55					0	0	1	0	0
ZNF90	7643	broad.mit.edu	37	19	20216065	20216065	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20216065C>T	uc002nor.2	+	3	305	c.166C>T	c.(166-168)CTG>TTG	p.L56L	ZNF90_uc002nos.1_RNA|ZNF90_uc002not.1_RNA	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	56	KRAB.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GATCACCTGTCTGGAGCAAGG	0.388													36	93					0	0	1	0	0
ZNF90	7643	broad.mit.edu	37	19	20216109	20216109	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20216109G>A	uc002nor.2	+	3	349	c.210G>A	c.(208-210)ATG>ATA	p.M70I	ZNF90_uc002nos.1_RNA|ZNF90_uc002not.1_RNA	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	70	KRAB.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GACATGAGATGATTGCCAAAT	0.408													29	94					0	0	1	0	0
ZNF90	7643	broad.mit.edu	37	19	20235891	20235891	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20235891C>T	uc002nos.1	+	5		c.567C>T			ZNF90_uc002not.1_RNA			Q03938	ZNF90_HUMAN	Synthetic construct DNA, clone: pF1KB9685, Homo sapiens ZNF90 gene for zinc finger protein 90, without stop codon, in Flexi system.							Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TGCAAGTCTTCGGACGCAAGA	0.627													8	17					0	0	1	0	0
LOC284441	284441	broad.mit.edu	37	19	20369958	20369958	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20369958G>A	uc002nov.2	+	1	1502	c.751G>A	c.(751-753)GGG>AGG	p.G251R		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						GCTTTCTGGAGGGTCTACTAT	0.403													19	79					0	0	1	0	0
ZNF737	100129842	broad.mit.edu	37	19	20728090	20728090	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20728090G>A	uc002npa.2	-	4	1099	c.919C>T	c.(919-921)CAT>TAT	p.H307Y		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	307					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCTCCGCTATGAATTATCTTA	0.408													20	56					0	0	1	0	0
ZNF737	100129842	broad.mit.edu	37	19	20736568	20736568	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20736568C>T	uc002npa.2	-	2	257	c.77G>A	c.(76-78)CGG>CAG	p.R26Q		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	26					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						ATATAAATTCCGCTGTGCAGT	0.393													19	225					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20807483	20807483	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20807483T>A	uc002npb.1	-	4	1350	c.1200A>T	c.(1198-1200)GAA>GAT	p.E400D	ZNF626_uc002npc.1_Missense_Mutation_p.E324D	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	400	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGCCACATTCTTCACATTTGT	0.398													8	116					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20807501	20807501	+	Silent	SNP	C	T	T	rs111500900		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20807501C>T	uc002npb.1	-	4	1332	c.1182G>A	c.(1180-1182)GAG>GAA	p.E394E	ZNF626_uc002npc.1_Silent_p.E318E	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	394					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGTAGGGTTTCTCTCCAGTAT	0.393													25	85					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20807786	20807786	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:20807786G>T	uc002npb.1	-	4	1047	c.897C>A	c.(895-897)ACC>ACA	p.T299T	ZNF626_uc002npc.1_Silent_p.T223T	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	299	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GTGTAGTAAGGGTTGAGGACC	0.368													16	140					6.31663e-08	6.33281e-08	1	1	0
ZNF430	80264	broad.mit.edu	37	19	21239752	21239752	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:21239752C>T	uc002npj.2	+	5	748	c.638C>T	c.(637-639)TCG>TTG	p.S213L	ZNF430_uc002npk.2_Missense_Mutation_p.S212L	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	213	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						TGTGACAAATCGTTTTGCATG	0.284													9	27					0	0	1	0	0
ZNF431	170959	broad.mit.edu	37	19	21366005	21366005	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:21366005C>T	uc002npp.2	+	5	1046	c.899C>T	c.(898-900)TCC>TTC	p.S300F	ZNF431_uc010ecq.2_Missense_Mutation_p.S209F|ZNF431_uc010ecr.2_Missense_Mutation_p.S301F	NM_133473	NP_597730	Q8TF32	ZN431_HUMAN	zinc finger protein 431	300	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(2)	2						TTCAACCGGTCCTCACACCTT	0.398													22	86					0	0	1	0	0
ZNF493	284443	broad.mit.edu	37	19	21607050	21607050	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:21607050C>T	uc002npx.2	+	2	1485	c.1205C>T	c.(1204-1206)TCA>TTA	p.S402L	ZNF493_uc002npw.2_Missense_Mutation_p.S530L|ZNF493_uc002npy.2_Missense_Mutation_p.S402L	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	402	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAACGATCTTCAACCCTTACT	0.348													15	58					0	0	1	0	0
ZNF429	353088	broad.mit.edu	37	19	21720271	21720271	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:21720271G>A	uc002nqd.1	+	4	1553	c.1416G>A	c.(1414-1416)AGG>AGA	p.R472R	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	472	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CTAGCCATAGGAGAATTCATA	0.383													23	89					0	0	1	0	0
ZNF100	163227	broad.mit.edu	37	19	21909553	21909553	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:21909553C>T	uc002nqi.2	-	5	1760	c.1561G>A	c.(1561-1563)GAC>AAC	p.D521N	ZNF100_uc002nqh.2_Missense_Mutation_p.D457N	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	521					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGTTAAAGTCTTTACCACAT	0.373													17	98					0	0	1	0	0
ZNF100	163227	broad.mit.edu	37	19	21910476	21910476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:21910476G>A	uc002nqi.2	-	5	837	c.638C>T	c.(637-639)TCA>TTA	p.S213L	ZNF100_uc002nqh.2_Missense_Mutation_p.S149L	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	213	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CATGCAAAATGATTTTTCACA	0.308													23	58					0	0	1	0	0
ZNF43	7594	broad.mit.edu	37	19	21991161	21991161	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:21991161G>A	uc002nqj.2	-	4	1808	c.1678C>T	c.(1678-1680)CAT>TAT	p.H560Y	ZNF43_uc010ecv.2_Missense_Mutation_p.H554Y|ZNF43_uc002nql.2_Missense_Mutation_p.H554Y|ZNF43_uc002nqm.2_Missense_Mutation_p.H554Y|ZNF43_uc002nqk.2_Missense_Mutation_p.H490Y	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	560	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TCTCCAGTATGAATCCTCTTA	0.363													37	69					0	0	1	0	0
ZNF43	7594	broad.mit.edu	37	19	21991299	21991299	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:21991299C>T	uc002nqj.2	-	4	1670	c.1540G>A	c.(1540-1542)GAA>AAA	p.E514K	ZNF43_uc010ecv.2_Missense_Mutation_p.E508K|ZNF43_uc002nql.2_Missense_Mutation_p.E508K|ZNF43_uc002nqm.2_Missense_Mutation_p.E508K|ZNF43_uc002nqk.2_Missense_Mutation_p.E444K	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	514	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TTGCCACATTCTTCACATTTG	0.373													23	107					0	0	1	0	0
ZNF43	7594	broad.mit.edu	37	19	21992598	21992598	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:21992598G>A	uc002nqj.2	-	4	371	c.241C>T	c.(241-243)CAT>TAT	p.H81Y	ZNF43_uc010ecv.2_Missense_Mutation_p.H75Y|ZNF43_uc002nql.2_Missense_Mutation_p.H75Y|ZNF43_uc002nqm.2_Missense_Mutation_p.H75Y|ZNF43_uc002nqk.2_Missense_Mutation_p.H11Y	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	81					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TGGGTAAAATGAGAACACATA	0.294													13	90					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22155483	22155483	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22155483C>T	uc002nqp.2	-	5	2202	c.2053G>A	c.(2053-2055)GCT>ACT	p.A685T	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CGGTTAAAAGCTTTGCCACAT	0.363													22	57					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22155533	22155533	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22155533T>C	uc002nqp.2	-	5	2152	c.2003A>G	c.(2002-2004)AAG>AGG	p.K668R	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ATGAATTTTCTTATGATAACT	0.353													16	59					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22155537	22155537	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22155537G>A	uc002nqp.2	-	5	2148	c.1999C>T	c.(1999-2001)CAT>TAT	p.H667Y	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ATTTTCTTATGATAACTAAGG	0.358													30	43					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22156526	22156526	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22156526G>A	uc002nqp.2	-	4	1459	c.1310C>T	c.(1309-1311)TCC>TTC	p.S437F	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AAGGTTTGAGGACCAGTTGAA	0.373													34	80					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22156658	22156658	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22156658C>T	uc002nqp.2	-	4	1327	c.1178G>A	c.(1177-1179)GGA>GAA	p.G393E	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GGGTTTCTCTCCAGTATGAAT	0.383													7	77					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22156749	22156749	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22156749G>A	uc002nqp.2	-	4	1236	c.1087C>T	c.(1087-1089)CAT>TAT	p.H363Y	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCTCCAGTATGAATTACCTTA	0.388													22	48					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22156957	22156957	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22156957G>A	uc002nqp.2	-	4	1028	c.879C>T	c.(877-879)GCC>GCT	p.A293A	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CCTTACTAAAGGCTTTGCCAC	0.393													24	64					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22157085	22157085	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22157085G>A	uc002nqp.2	-	4	900	c.751C>T	c.(751-753)CAT>TAT	p.H251Y	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCTCCAGTATGAATTACCTTA	0.353													24	47					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22157244	22157244	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22157244C>T	uc002nqp.2	-	4	741	c.592G>A	c.(592-594)GAG>AAG	p.E198K	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TAGGAATTCTCTCTAGTATAA	0.363													28	58					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22157562	22157562	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22157562C>T	uc002nqp.2	-	4	423	c.274G>A	c.(274-276)GAA>AAA	p.E92K	ZNF208_uc002nqo.1_Missense_Mutation_p.E92K|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AAAGAATCTTCTATGCCCTGC	0.318													19	41					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22170068	22170068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22170068C>T	uc002nqp.2	-	3	325	c.176G>A	c.(175-177)GGA>GAA	p.G59E	ZNF208_uc002nqo.1_Missense_Mutation_p.G59E|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GGACTCTTTTCCTTCCTCCAG	0.413													9	106					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22171710	22171710	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22171710C>T	uc002nqp.2	-	2	154	c.5G>A	c.(4-6)GGA>GAA	p.G2E	ZNF208_uc002nqo.1_Missense_Mutation_p.G2E|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGTCAATGATCCCTGGAAAAC	0.403													52	156					0	0	1	0	0
ZNF257	113835	broad.mit.edu	37	19	22255652	22255652	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22255652G>A	uc010ecx.2	+	2	214	c.45G>A	c.(43-45)CTG>CTA	p.L15L	ZNF257_uc010ecy.2_5'UTR	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	15	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				AATTCTCTCTGGAGGAGTGGC	0.433													50	160					0	0	1	0	0
ZNF257	113835	broad.mit.edu	37	19	22271387	22271387	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22271387C>T	uc010ecx.2	+	4	1004	c.835C>T	c.(835-837)CAT>TAT	p.H279Y	ZNF257_uc010ecy.2_Missense_Mutation_p.H247Y	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	279	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				TAAGAGAATTCATAATAGAGA	0.378													14	38					0	0	1	0	0
ZNF257	113835	broad.mit.edu	37	19	22271762	22271762	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22271762G>A	uc010ecx.2	+	4	1379	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	ZNF257_uc010ecy.2_Missense_Mutation_p.E372K	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	404	C2H2-type 9; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				CAAATGTGATGAATATTGCAA	0.393													16	25					0	0	1	0	0
ZNF257	113835	broad.mit.edu	37	19	22271920	22271920	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22271920G>A	uc010ecx.2	+	4	1537	c.1368G>A	c.(1366-1368)GAG>GAA	p.E456E	ZNF257_uc010ecy.2_Silent_p.E424E	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	456					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				ATACTGGAGAGAAACCCTACA	0.393													24	55					0	0	1	0	0
ZNF257	113835	broad.mit.edu	37	19	22272156	22272156	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22272156G>A	uc010ecx.2	+	4	1773	c.1604G>A	c.(1603-1605)AGA>AAA	p.R535K	ZNF257_uc010ecy.2_Missense_Mutation_p.R503K	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	535	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				GTACATAAGAGAATTCATGCT	0.363													23	37					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22362829	22362829	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22362829C>T	uc002nqs.1	-	3	2008	c.1690G>A	c.(1690-1692)GAA>AAA	p.E564K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	564	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				CCACATTCTTCACATTTGTAG	0.378													34	90					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363270	22363270	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22363270C>T	uc002nqs.1	-	3	1567	c.1249G>A	c.(1249-1251)GGA>AGA	p.G417R		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	417					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				GGTTTCTCTCCAGTATGAATT	0.433													40	117					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363473	22363473	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22363473G>A	uc002nqs.1	-	3	1364	c.1046C>T	c.(1045-1047)TCC>TTC	p.S349F		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	349	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				AAGGATTGAGGATCGATTAAA	0.403													31	120					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363912	22363912	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22363912C>T	uc002nqs.1	-	3	925	c.607G>A	c.(607-609)GGC>AGC	p.G203S		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	203	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				AAGGCTTTGCCACATTCTTCA	0.358													26	84					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363937	22363937	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22363937C>T	uc002nqs.1	-	3	900	c.582G>A	c.(580-582)GAG>GAA	p.E194E		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	194					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TGTAGGGTTTCTCTCCAGTAT	0.348													10	110					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22364016	22364016	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22364016G>A	uc002nqs.1	-	3	821	c.503C>T	c.(502-504)TCC>TTC	p.S168F		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	168					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				ACATTTGTAGGAATTCTCTCT	0.338													37	82					0	0	1	0	0
ZNF98	148198	broad.mit.edu	37	19	22574492	22574492	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22574492C>T	uc002nqt.2	-	4	1667	c.1545G>A	c.(1543-1545)GAG>GAA	p.E515E		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	515					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TGTAGGGTTTCTCTCCAGTAT	0.393													23	77					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	22783059	22783059	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22783059G>A	uc002nqu.3	+	5		c.566G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		GGAGGAGCTGGAGAGTCTGGC	0.632													3	8					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	22785278	22785278	+	RNA	SNP	G	A	A	rs141007327	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22785278G>A	uc002nqu.3	+	7		c.1454G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		TGTGTGGGGGGACCCACCGGG	0.662													7	15					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	22785631	22785631	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22785631G>A	uc002nqu.3	+	9		c.1638G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		CAGCGCTGAAGGAGCAGCACC	0.667													10	17					0	0	1	0	0
ZNF492	57615	broad.mit.edu	37	19	22846811	22846811	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22846811C>T	uc002nqw.3	+	4	584	c.340C>T	c.(340-342)CAA>TAA	p.Q114*		NM_020855	NP_065906	Q9P255	ZN492_HUMAN	zinc finger protein 492	114					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.0266)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00203)|Hepatocellular(1079;0.244)				CAAAATATTTCAATGTGACAA	0.313													8	20					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940437	22940437	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22940437C>T	uc010xrh.1	-	5	2001	c.2001G>A	c.(1999-2001)GAG>GAA	p.E667E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGCAGGGTTTCTCTGCAGTAT	0.353													6	86					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940539	22940539	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22940539C>T	uc010xrh.1	-	5	1899	c.1899G>A	c.(1897-1899)GAG>GAA	p.E633E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TATGAATTATCTCATGTTTTC	0.363													24	70					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940754	22940754	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22940754C>T	uc010xrh.1	-	5	1684	c.1684G>A	c.(1684-1686)GAA>AAA	p.E562K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTACCACATTCTTCACATTTG	0.383													21	76					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940775	22940775	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22940775C>T	uc010xrh.1	-	5	1663	c.1663G>A	c.(1663-1665)GAG>AAG	p.E555K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TAGGGTTTCTCTCCAGTATGA	0.368													24	65					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940784	22940784	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22940784G>A	uc010xrh.1	-	5	1654	c.1654C>T	c.(1654-1656)CAT>TAT	p.H552Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTCCAGTATGAATTATCTCA	0.363													21	68					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940841	22940841	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22940841C>T	uc010xrh.1	-	5	1597	c.1597G>A	c.(1597-1599)GAA>AAA	p.E533K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CCACATTCTTCACATTTGTAG	0.383													18	80					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22941084	22941084	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22941084C>T	uc010xrh.1	-	5	1354	c.1354G>A	c.(1354-1356)GGC>AGC	p.G452S		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAAGCTTTGCCACATTCTTCA	0.343													17	72					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22941460	22941460	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22941460T>C	uc010xrh.1	-	5	978	c.978A>G	c.(976-978)GTA>GTG	p.V326V		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CAGTATGAATTACCTTATGTA	0.358													19	63					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22941645	22941645	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:22941645G>A	uc010xrh.1	-	5	793	c.793C>T	c.(793-795)CTT>TTT	p.L265F		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGTTTTCTAAGGGTTGAGGAC	0.368													37	95					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	23299893	23299893	+	RNA	SNP	G	A	A	rs35384974		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:23299893G>A	uc002nrb.1	+	1		c.117G>A								Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		TCTGCACGTAGAAGCCCAGCC	0.612													26	53					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	23318846	23318846	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:23318846G>A	uc002nrb.1	+	3		c.425_splice	c.e3+1							Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		AAACCCCCAGGTAGGTGACAG	0.363													30	100					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	23329128	23329128	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:23329128G>A	uc002nrb.1	+	4		c.1481G>A								Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		CAAATGTGAAGAATGTGGCAG	0.388													24	55					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	23405633	23405633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:23405633G>A	uc010xri.1	-	4	1532	c.1414C>T	c.(1414-1416)CAT>TAT	p.H472Y						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		TCTCCAGTATGAATTATCCTA	0.368													28	84					0	0	1	0	0
ZNF91	7644	broad.mit.edu	37	19	23542422	23542422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:23542422G>A	uc002nre.2	-	4	3472	c.3359C>T	c.(3358-3360)GCT>GTT	p.A1120V	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.A1088V	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	1120	C2H2-type 35.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				TTTAGTAAGAGCTGAGGACTC	0.398													15	93					0	0	1	0	0
ZNF91	7644	broad.mit.edu	37	19	23543378	23543378	+	Missense_Mutation	SNP	T	G	G	rs1821843		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:23543378T>G	uc002nre.2	-	4	2516	c.2403A>C	c.(2401-2403)GAA>GAC	p.E801D	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.E769D	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	801	C2H2-type 24.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				TGCCACATTCTTCACATTTGT	0.393													27	106					0	0	1	0	0
ZNF675	171392	broad.mit.edu	37	19	23836763	23836763	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:23836763G>A	uc002nri.2	-	4	1154	c.972C>T	c.(970-972)TCC>TCT	p.S324S		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	324	C2H2-type 7.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TAAGGGTTGAGGATTGGGTAA	0.368													15	85					0	0	1	0	0
ZNF681	148213	broad.mit.edu	37	19	23926680	23926680	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:23926680C>T	uc002nrk.3	-	4	1814	c.1672G>A	c.(1672-1674)GGA>AGA	p.G558R	ZNF681_uc002nrl.3_Missense_Mutation_p.G489R|ZNF681_uc002nrj.3_Missense_Mutation_p.G489R	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	558					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				GGTTTCTCTCCAGTATGAATT	0.398													9	107					0	0	1	0	0
ZNF681	148213	broad.mit.edu	37	19	23927219	23927219	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:23927219G>A	uc002nrk.3	-	4	1275	c.1133C>T	c.(1132-1134)TCC>TTC	p.S378F	ZNF681_uc002nrl.3_Missense_Mutation_p.S309F|ZNF681_uc002nrj.3_Missense_Mutation_p.S309F	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	378	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				AAGGTGTGAGGACTGCCTAAA	0.408													35	92					0	0	1	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010549	24010549	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:24010549G>A	uc002nrn.2	+	4	1009	c.586G>A	c.(586-588)GAG>AAG	p.E196K		NM_002295	NP_002286			ribosomal protein SA												0						ACACCCATGGGAGGTCATGCC	0.522													10	27					0	0	1	0	0
ZNF254	9534	broad.mit.edu	37	19	24309442	24309442	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:24309442G>A	uc002nru.2	+	4	774	c.640G>A	c.(640-642)GAA>AAA	p.E214K	ZNF254_uc010xrk.1_Missense_Mutation_p.E129K	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	214	C2H2-type 1; degenerate.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				CAAATGTAAAGAATGTGGAAA	0.303													23	106					0	0	1	0	0
POP4	10775	broad.mit.edu	37	19	30099604	30099604	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:30099604C>T	uc002nsf.2	+	2	104	c.48C>T	c.(46-48)GAC>GAT	p.D16D	POP4_uc002nsg.2_Missense_Mutation_p.T10I	NM_006627	NP_006618	O95707	RPP29_HUMAN	processing of precursor 4	16					mRNA cleavage|rRNA processing|tRNA processing	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease P activity|RNA binding				0	Ovarian(5;0.000567)|Breast(6;0.0602)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0623)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.225)			AGGCGAATGACTCCGATGTCC	0.483													11	127					0	0	1	0	0
POP4	10775	broad.mit.edu	37	19	30106194	30106194	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:30106194C>T	uc002nsf.2	+	7	626	c.570C>T	c.(568-570)GGC>GGT	p.G190G	POP4_uc002nsg.2_Silent_p.G109G	NM_006627	NP_006618	O95707	RPP29_HUMAN	processing of precursor 4	190					mRNA cleavage|rRNA processing|tRNA processing	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease P activity|RNA binding				0	Ovarian(5;0.000567)|Breast(6;0.0602)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0623)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.225)			AAACCGATGGCTTTATTTCCT	0.333													23	49					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30934525	30934525	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:30934525C>T	uc002nsu.1	+	2	194	c.56C>T	c.(55-57)CCC>CTC	p.P19L	ZNF536_uc010edd.1_Missense_Mutation_p.P19L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	19					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GAAGCTGAGCCCCACCTGAGT	0.622													52	122					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30934539	30934539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:30934539C>T	uc002nsu.1	+	2	208	c.70C>T	c.(70-72)CCC>TCC	p.P24S	ZNF536_uc010edd.1_Missense_Mutation_p.P24S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	24					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCTGAGTGGCCCCGTCCTCAA	0.622													45	135					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935684	30935684	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:30935684C>T	uc002nsu.1	+	2	1353	c.1215C>T	c.(1213-1215)TCC>TCT	p.S405S	ZNF536_uc010edd.1_Silent_p.S405S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	405					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AGAACAAGTCCCCCAGCGACC	0.622													6	57					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935849	30935849	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:30935849G>A	uc002nsu.1	+	2	1518	c.1380G>A	c.(1378-1380)ATG>ATA	p.M460I	ZNF536_uc010edd.1_Missense_Mutation_p.M460I	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	460					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AGCTGCCCATGAAGGAGAAGG	0.642													15	55					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935870	30935870	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:30935870G>A	uc002nsu.1	+	2	1539	c.1401G>A	c.(1399-1401)GGG>GGA	p.G467G	ZNF536_uc010edd.1_Silent_p.G467G	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	467					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AAGCGCTGGGGAAGCTGCTGT	0.642													17	61					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935936	30935937	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:30935936_30935937GG>AA	uc002nsu.1	+	2	1605_1606	c.1467_1468GG>AA	c.(1465-1470)CTGGGA>CTAAGA	p.G490R	ZNF536_uc010edd.1_Missense_Mutation_p.G490R	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	490					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ACTCCCTCCTGGGATGCCTCAA	0.658													26	54					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30936219	30936219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:30936219C>T	uc002nsu.1	+	2	1888	c.1750C>T	c.(1750-1752)CAC>TAC	p.H584Y	ZNF536_uc010edd.1_Missense_Mutation_p.H584Y	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	584					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TGATTTGGTTCACAGCACTAA	0.517													23	77					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31039402	31039402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:31039402C>T	uc002nsu.1	+	4	3014	c.2876C>T	c.(2875-2877)CCC>CTC	p.P959L	ZNF536_uc010edd.1_Missense_Mutation_p.P959L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	959					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GAGGAGAAACCCAGTGGCAAG	0.577													53	151					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31039417	31039417	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:31039417C>T	uc002nsu.1	+	4	3029	c.2891C>T	c.(2890-2892)TCC>TTC	p.S964F	ZNF536_uc010edd.1_Missense_Mutation_p.S964F	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	964					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGCAAGTCCTCCCAGAGGAAG	0.582													31	161					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31039962	31039962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:31039962C>T	uc002nsu.1	+	4	3574	c.3436C>T	c.(3436-3438)CCC>TCC	p.P1146S	ZNF536_uc010edd.1_Missense_Mutation_p.P1146S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AGAGGATGTCCCCATCCTGAT	0.552													20	71					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31040194	31040194	+	Missense_Mutation	SNP	C	T	T	rs142812385		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:31040194C>T	uc002nsu.1	+	4	3806	c.3668C>T	c.(3667-3669)TCA>TTA	p.S1223L	ZNF536_uc010edd.1_Missense_Mutation_p.S1223L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGACTGGTCTCACCTTTATCC	0.662													26	42					0	0	1	0	0
TSHZ3	57616	broad.mit.edu	37	19	31770514	31770514	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:31770514G>A	uc002nsy.3	-	2	250	c.185C>T	c.(184-186)TCC>TTC	p.S62F		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	62					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					GGCGGCCGGGGAGTTCTGGTA	0.587													15	14					0	0	1	0	0
DPY19L3	147991	broad.mit.edu	37	19	32954811	32954811	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:32954811C>T	uc002ntg.2	+	14	1658	c.1482C>T	c.(1480-1482)TTC>TTT	p.F494F	DPY19L3_uc002nth.1_Silent_p.F494F|DPY19L3_uc002nti.1_RNA	NM_207325	NP_997208	Q6ZPD9	D19L3_HUMAN	dpy-19-like 3	494	Helical; (Potential).					integral to membrane				ovary(4)	4	Esophageal squamous(110;0.162)					TGTGTGTGTTCGCATCATTCG	0.443													84	196					0	0	1	0	0
CCDC123	84902	broad.mit.edu	37	19	33390817	33390817	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33390817G>A	uc002nty.2	-	16	1910	c.1821C>T	c.(1819-1821)AAC>AAT	p.N607N	CCDC123_uc002ntx.2_Silent_p.N360N|CCDC123_uc010edg.2_RNA	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123	607	Potential.					centrosome|spindle pole					0	Esophageal squamous(110;0.137)					GGCCAACAAGGTTTGCCAGGT	0.428													36	100					0	0	1	0	0
RHPN2	85415	broad.mit.edu	37	19	33517487	33517487	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33517487G>A	uc002nuf.2	-	3	303	c.237C>T	c.(235-237)TTC>TTT	p.F79F	RHPN2_uc010xro.1_5'UTR|RHPN2_uc002nue.2_5'UTR	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	79	REM.				signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					CTGAGTTGACGAAGCTCAGCT	0.562													113	68					0	0	1	0	0
GPATCH1	55094	broad.mit.edu	37	19	33587345	33587345	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33587345C>T	uc002nug.1	+	7	1159	c.845C>T	c.(844-846)TCA>TTA	p.S282L		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	282						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					TTGGGAATTTCAGGCCAGGTA	0.343													10	58					0	0	1	0	0
GPATCH1	55094	broad.mit.edu	37	19	33597733	33597733	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33597733C>T	uc002nug.1	+	10	1527	c.1213C>T	c.(1213-1215)CCA>TCA	p.P405S		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	405						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					AACGCCTGACCCAGGGACACA	0.522													13	69					0	0	1	0	0
GPATCH1	55094	broad.mit.edu	37	19	33603471	33603471	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33603471C>T	uc002nug.1	+	13	2158	c.1844C>T	c.(1843-1845)CCT>CTT	p.P615L	GPATCH1_uc002nuh.1_5'Flank	NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	615						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					GAGTGGCACCCTGACAAGCTT	0.413													28	58					0	0	1	0	0
WDR88	126248	broad.mit.edu	37	19	33623141	33623141	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33623141C>T	uc002nui.2	+	1	144	c.66C>T	c.(64-66)TCC>TCT	p.S22S		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	22										ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					CGCCACCCTCCGCCCCCGCCA	0.701													8	72					0	0	1	0	0
WDR88	126248	broad.mit.edu	37	19	33623339	33623339	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33623339C>T	uc002nui.2	+	1	342	c.264C>T	c.(262-264)GAC>GAT	p.D88D		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	88										ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					GCGACCAGGACCCTCTCTCCA	0.652													21	74					0	0	1	0	0
WDR88	126248	broad.mit.edu	37	19	33639752	33639752	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33639752C>T	uc002nui.2	+	5	693	c.615C>T	c.(613-615)TTC>TTT	p.F205F		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	205	WD 3.									ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					TCTCAGGCTTCGACGTGGATC	0.493													61	161					0	0	1	0	0
LRP3	4037	broad.mit.edu	37	19	33696189	33696190	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33696189_33696190CC>TT	uc010edh.2	+	5	606_607	c.513_514CC>TT	c.(511-516)TTCCGC>TTTTGC	p.R172C	LRP3_uc010xrp.1_Missense_Mutation_p.R46C|LRP3_uc002nuk.3_Missense_Mutation_p.R46C	NM_002333	NP_002324	O75074	LRP3_HUMAN	low density lipoprotein receptor-related protein	172	Extracellular (Potential).|LDL-receptor class A 1.				receptor-mediated endocytosis	coated pit|integral to membrane	receptor activity			pancreas(2)|ovary(1)	3	Esophageal squamous(110;0.137)					CAGATGAGTTCCGCTGTGACAA	0.663													3	10					0	0	1	0	0
LRP3	4037	broad.mit.edu	37	19	33696629	33696629	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33696629G>A	uc010edh.2	+	5	1046	c.953G>A	c.(952-954)GGG>GAG	p.G318E	LRP3_uc010xrp.1_Missense_Mutation_p.G192E|LRP3_uc002nuk.3_Missense_Mutation_p.G192E	NM_002333	NP_002324	O75074	LRP3_HUMAN	low density lipoprotein receptor-related protein	318	Extracellular (Potential).|CUB 2.				receptor-mediated endocytosis	coated pit|integral to membrane	receptor activity			pancreas(2)|ovary(1)	3	Esophageal squamous(110;0.137)					GGCGAGCGCGGGGACCGCCTG	0.711													3	23					0	0	1	0	0
SLC7A10	56301	broad.mit.edu	37	19	33702229	33702229	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:33702229G>A	uc002num.2	-	7	1065	c.918C>T	c.(916-918)TTC>TTT	p.F306F	SLC7A10_uc002nul.2_Missense_Mutation_p.R45W	NM_019849	NP_062823	Q9NS82	AAA1_HUMAN	solute carrier family 7, member 10	306					blood coagulation|cellular nitrogen compound metabolic process|ion transport|leukocyte migration	integral to plasma membrane	L-serine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(110;0.137)					GCTTCTCCCCGAAGGTCTGGG	0.622													9	47					0	0	1	0	0
CHST8	64377	broad.mit.edu	37	19	34180240	34180240	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:34180240C>T	uc002nus.3	+	3	578	c.73C>T	c.(73-75)CTC>TTC	p.L25F	CHST8_uc002nut.3_Missense_Mutation_p.L25F|CHST8_uc002nuu.2_Missense_Mutation_p.L25F	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	25	Helical; Signal-anchor for type II membrane protein; (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					AGCTGCAGGCCTCCTCCTCTT	0.637													42	101					0	0	1	0	0
CHST8	64377	broad.mit.edu	37	19	34180243	34180243	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:34180243C>T	uc002nus.3	+	3	581	c.76C>T	c.(76-78)CTC>TTC	p.L26F	CHST8_uc002nut.3_Missense_Mutation_p.L26F|CHST8_uc002nuu.2_Missense_Mutation_p.L26F	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	26	Helical; Signal-anchor for type II membrane protein; (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					TGCAGGCCTCCTCCTCTTCAT	0.642													24	119					0	0	1	0	0
CHST8	64377	broad.mit.edu	37	19	34263239	34263239	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:34263239C>T	uc002nus.3	+	5	1051	c.546C>T	c.(544-546)TCC>TCT	p.S182S	CHST8_uc002nut.3_Silent_p.S182S|CHST8_uc002nuu.2_Silent_p.S182S	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	182	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					GCCACGTGTCCCGTATCTTCG	0.706													6	47					0	0	1	0	0
LSM14A	26065	broad.mit.edu	37	19	34699853	34699853	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:34699853C>T	uc002nvb.3	+	4	631	c.435C>T	c.(433-435)TCC>TCT	p.S145S	LSM14A_uc002nva.3_Silent_p.S145S|LSM14A_uc010xru.1_Intron|LSM14A_uc002nvc.3_5'UTR	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	145					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					CTTTGACATCCTTTGGAACAG	0.323													8	27					0	0	1	0	0
SCGBL	284402	broad.mit.edu	37	19	35085210	35085210	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35085210G>A	uc002nvn.2	-	2	138	c.116C>T	c.(115-117)TCC>TTC	p.S39F		NM_001025591	NP_001020762	Q4G0G5	SCGBL_HUMAN	secretoglobin-like precursor	39						extracellular region	binding				0						GAGGTCTTGGGACACATCAAA	0.507													23	104					0	0	1	0	0
ZNF599	148103	broad.mit.edu	37	19	35251398	35251398	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35251398G>A	uc010edn.1	-	4	696	c.308C>T	c.(307-309)TCT>TTT	p.S103F	ZNF599_uc010edm.1_Missense_Mutation_p.S66F	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	103					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			TTCCTGGAAAGAGGATTCCTC	0.428													30	65					0	0	1	0	0
ZNF792	126375	broad.mit.edu	37	19	35449721	35449721	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35449721G>A	uc002nxh.1	-	4	1425	c.1038C>T	c.(1036-1038)TTC>TTT	p.F346F		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	346	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			TTCGGCTGAAGAATTTCCCAC	0.507													15	32					0	0	1	0	0
ZNF792	126375	broad.mit.edu	37	19	35450246	35450246	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35450246G>A	uc002nxh.1	-	4	900	c.513C>T	c.(511-513)TTC>TTT	p.F171F		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	171					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			GGTTTGCACTGAACTCAGAGC	0.507													122	219					0	0	1	0	0
SCN1B	6324	broad.mit.edu	37	19	35524582	35524582	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35524582C>T	uc002nxp.2	+	3	578	c.387C>T	c.(385-387)TTC>TTT	p.F129F	SCN1B_uc002nxo.1_Silent_p.F129F|SCN1B_uc010xsg.1_Intron	NM_001037	NP_001028	Q07699	SCN1B_HUMAN	sodium channel, voltage-gated, type I, beta	129	Extracellular (Potential).|Ig-like C2-type.				axon guidance|synaptic transmission	integral to membrane	voltage-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;2.66e-08)|Lung NSC(56;4.13e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			TGCTCTTCTTCGAAAACTACG	0.552													52	122					0	0	1	0	0
HPN	3249	broad.mit.edu	37	19	35550838	35550838	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35550838C>T	uc002nxq.1	+	7	596	c.351C>T	c.(349-351)TTC>TTT	p.F117F	HPN_uc002nxr.1_Silent_p.F117F|HPN_uc002nxs.1_Intron|HPN_uc010xsh.1_Silent_p.F86F|HPN_uc002nxt.1_5'UTR|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	117	SRCR.|Extracellular (Potential).				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	CGTCGGGCTTCTTCTGTGTGG	0.697													6	13					0	0	1	0	0
HPN	3249	broad.mit.edu	37	19	35551337	35551337	+	Missense_Mutation	SNP	C	T	T	rs147075058	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35551337C>T	uc002nxq.1	+	9	786	c.541C>T	c.(541-543)CGC>TGC	p.R181C	HPN_uc002nxr.1_Missense_Mutation_p.R181C|HPN_uc002nxs.1_Intron|HPN_uc010xsh.1_Missense_Mutation_p.R150C|HPN_uc002nxt.1_Missense_Mutation_p.R65C|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	181	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	AGTCAGCCTTCGCTATGATGG	0.682													52	91					0	0	1	0	0
HPN	3249	broad.mit.edu	37	19	35551382	35551382	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35551382G>A	uc002nxq.1	+	9	831	c.586G>A	c.(586-588)GAC>AAC	p.D196N	HPN_uc002nxr.1_Missense_Mutation_p.D196N|HPN_uc002nxs.1_Intron|HPN_uc010xsh.1_Missense_Mutation_p.D165N|HPN_uc002nxt.1_Missense_Mutation_p.D80N|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	196	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	GCTCTCCGGGGACTGGGTGCT	0.672													37	95					0	0	1	0	0
HPN	3249	broad.mit.edu	37	19	35551632	35551633	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35551632_35551633GG>AA	uc002nxq.1	+	10	967_968	c.722_723GG>AA	c.(721-723)GGG>GAA	p.G241E	HPN_uc002nxr.1_Missense_Mutation_p.G241E|HPN_uc002nxs.1_Missense_Mutation_p.G83E|HPN_uc010xsh.1_Missense_Mutation_p.G210E|HPN_uc002nxt.1_Missense_Mutation_p.G125E|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	241	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	GTCTACCACGGGGGCTATCTTC	0.644													25	75					0	0	1	0	0
HPN	3249	broad.mit.edu	37	19	35556465	35556465	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35556465G>A	uc002nxq.1	+	12	1175	c.930G>A	c.(928-930)CAG>CAA	p.Q310Q	HPN_uc002nxr.1_Silent_p.Q310Q|HPN_uc002nxs.1_Silent_p.Q152Q|HPN_uc010xsh.1_Silent_p.Q279Q|HPN_uc002nxt.1_Silent_p.Q194Q|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	310	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	GGGTACTCCAGGAGGCTCGAG	0.612													17	29					0	0	1	0	0
HPN	3249	broad.mit.edu	37	19	35556516	35556516	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35556516C>T	uc002nxq.1	+	12	1226	c.981C>T	c.(979-981)TTC>TTT	p.F327F	HPN_uc002nxr.1_Silent_p.F327F|HPN_uc002nxs.1_Silent_p.F169F|HPN_uc010xsh.1_Silent_p.F296F|HPN_uc002nxt.1_Silent_p.F211F|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	327	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	GCGCTGACTTCTATGGAAACC	0.602													38	70					0	0	1	0	0
LGI4	163175	broad.mit.edu	37	19	35617264	35617264	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35617264G>A	uc002nxx.2	-	8	1803	c.1209C>T	c.(1207-1209)ATC>ATT	p.I403I	LGI4_uc002nxy.1_Silent_p.I231I|LGI4_uc002nxz.1_Silent_p.I231I	NM_139284	NP_644813	Q8N135	LGI4_HUMAN	leucine-rich repeat LGI family, member 4	403	EAR 3.					extracellular region				pancreas(1)	1	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.54e-20)|OV - Ovarian serous cystadenocarcinoma(14;1.33e-18)|all cancers(14;4.27e-17)|LUSC - Lung squamous cell carcinoma(66;0.0849)			CGGCCTCGGGGATGTCTGTGC	0.667													5	12					0	0	1	0	0
LGI4	163175	broad.mit.edu	37	19	35622914	35622914	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35622914G>A	uc002nxx.2	-	4	941	c.347C>T	c.(346-348)TCT>TTT	p.S116F	LGI4_uc002nxy.1_5'UTR|LGI4_uc002nxz.1_5'UTR|LGI4_uc002nya.2_Missense_Mutation_p.S116F	NM_139284	NP_644813	Q8N135	LGI4_HUMAN	leucine-rich repeat LGI family, member 4	116	LRR 3.					extracellular region				pancreas(1)	1	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.54e-20)|OV - Ovarian serous cystadenocarcinoma(14;1.33e-18)|all cancers(14;4.27e-17)|LUSC - Lung squamous cell carcinoma(66;0.0849)			GGCATTCTTAGAGATGGAGCC	0.607													5	9					0	0	1	0	0
FXYD5	53827	broad.mit.edu	37	19	35657175	35657175	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35657175G>A	uc002nyg.1	+	8	520	c.434G>A	c.(433-435)CGG>CAG	p.R145Q	FXYD5_uc010xsq.1_Missense_Mutation_p.R145Q|FXYD5_uc002nyh.1_Missense_Mutation_p.R145Q|FXYD5_uc002nyi.1_Missense_Mutation_p.R82Q|FXYD5_uc002nyj.1_5'Flank	NM_014164	NP_054883	Q96DB9	FXYD5_HUMAN	FXYD domain-containing ion transport regulator 5	145	Extracellular (Potential).				microvillus assembly|negative regulation of calcium-dependent cell-cell adhesion	integral to membrane	actin binding|cadherin binding|ion channel activity				0	all_lung(56;9.4e-09)|Lung NSC(56;1.4e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.75e-22)|OV - Ovarian serous cystadenocarcinoma(14;3.17e-20)|all cancers(14;7.07e-19)|LUSC - Lung squamous cell carcinoma(66;0.0221)			CTCCGGAAACGGGGGCTGTTG	0.547													72	270					0	0	1	0	0
FXYD5	53827	broad.mit.edu	37	19	35660507	35660507	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35660507C>T	uc002nyg.1	+	9	612	c.526C>T	c.(526-528)CGT>TGT	p.R176C	FXYD5_uc002nyh.1_Missense_Mutation_p.R176C|FXYD5_uc002nyi.1_Missense_Mutation_p.R113C|FXYD5_uc002nyj.1_RNA	NM_014164	NP_054883	Q96DB9	FXYD5_HUMAN	FXYD domain-containing ion transport regulator 5	176	Cytoplasmic (Potential).				microvillus assembly|negative regulation of calcium-dependent cell-cell adhesion	integral to membrane	actin binding|cadherin binding|ion channel activity				0	all_lung(56;9.4e-09)|Lung NSC(56;1.4e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.75e-22)|OV - Ovarian serous cystadenocarcinoma(14;3.17e-20)|all cancers(14;7.07e-19)|LUSC - Lung squamous cell carcinoma(66;0.0221)			ATGCCGGAATCGTTGCAGGTG	0.562													12	25					0	0	1	0	0
FAM187B	148109	broad.mit.edu	37	19	35715768	35715768	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35715768G>A	uc002nyk.1	-	2	1115	c.1070C>T	c.(1069-1071)TCC>TTC	p.S357F		NM_152481	NP_689694	Q17R55	F187B_HUMAN	family with sequence similarity 187, member B	357	Cytoplasmic (Potential).					integral to membrane				ovary(2)	2						CCTGCCCGGGGAAGGGTGGAT	0.677													19	26					0	0	1	0	0
HAMP	57817	broad.mit.edu	37	19	35773543	35773543	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35773543G>A	uc002nyw.2	+	1	134	c.63G>A	c.(61-63)CTG>CTA	p.L21L		NM_021175	NP_066998	P81172	HEPC_HUMAN	hepcidin antimicrobial peptide preproprotein	21					defense response to bacterium|defense response to fungus|immune response|killing of cells of other organism	extracellular region	hormone activity			central_nervous_system(1)	1	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)		Epithelial(14;7.4e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.47e-19)|all cancers(14;4.17e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			TCGCCAGCCTGACCAGTGGCT	0.642													64	125					0	0	1	0	0
MAG	4099	broad.mit.edu	37	19	35786520	35786520	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35786520C>T	uc002nyy.1	+	4	200	c.51C>T	c.(49-51)TCC>TCT	p.S17S	MAG_uc002nyx.1_Silent_p.S17S|MAG_uc010eds.1_5'UTR|MAG_uc002nyz.1_Silent_p.S17S	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	17					blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			CCGCAGCCTCCCGAGGGGGTC	0.687													25	47					0	0	1	0	0
MAG	4099	broad.mit.edu	37	19	35786728	35786728	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35786728G>A	uc002nyy.1	+	4	408	c.259G>A	c.(259-261)GGC>AGC	p.G87S	MAG_uc002nyx.1_Missense_Mutation_p.G87S|MAG_uc010eds.1_Missense_Mutation_p.G62S|MAG_uc002nyz.1_Missense_Mutation_p.G87S	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	87	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GAGCTTCCAGGGCCGCAGCCG	0.632													58	167					0	0	1	0	0
MAG	4099	broad.mit.edu	37	19	35800925	35800925	+	Silent	SNP	C	T	T	rs148978165		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35800925C>T	uc002nyy.1	+	8	1529	c.1380C>T	c.(1378-1380)TTC>TTT	p.F460F	MAG_uc002nyx.1_Silent_p.F460F|MAG_uc010eds.1_Silent_p.F435F|MAG_uc002nyz.1_Silent_p.F460F	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	460	Ig-like C2-type 4.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			AGCGGGAGTTCGTGTACTCGG	0.682													23	103					0	0	1	0	0
MAG	4099	broad.mit.edu	37	19	35802840	35802840	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35802840C>T	uc002nyy.1	+	10	1785	c.1636C>T	c.(1636-1638)CCC>TCC	p.P546S	MAG_uc002nyx.1_Missense_Mutation_p.P546S|MAG_uc010eds.1_Missense_Mutation_p.P521S|MAG_uc002nyz.1_Missense_Mutation_p.P546S	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	546	Cytoplasmic (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GACAGAGAGCCCCAGCTTCTC	0.607													6	18					0	0	1	0	0
MAG	4099	broad.mit.edu	37	19	35802909	35802909	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35802909G>A	uc002nyy.1	+	10	1854	c.1705G>A	c.(1705-1707)GAG>AAG	p.E569K	MAG_uc002nyx.1_Missense_Mutation_p.E569K|MAG_uc010eds.1_Missense_Mutation_p.E544K|MAG_uc002nyz.1_Missense_Mutation_p.E569K	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	569	Cytoplasmic (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			TGGGGCACCAGAGAAGTACGA	0.637													3	19					0	0	1	0	0
MAG	4099	broad.mit.edu	37	19	35804209	35804209	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35804209G>A	uc002nyy.1	+	11	1882	c.1733G>A	c.(1732-1734)GGA>GAA	p.G578E	MAG_uc002nyx.1_3'UTR|MAG_uc010eds.1_Missense_Mutation_p.G553E|MAG_uc002nyz.1_Missense_Mutation_p.G578E	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	578	Cytoplasmic (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			AGGCGCCTGGGATCTGAGAGG	0.622													16	89					0	0	1	0	0
CD22	933	broad.mit.edu	37	19	35823538	35823538	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35823538G>A	uc010edt.2	+	3	200	c.123G>A	c.(121-123)TGG>TGA	p.W41*	CD22_uc010xst.1_5'UTR|CD22_uc010edu.2_Nonsense_Mutation_p.W41*|CD22_uc010edv.2_Nonsense_Mutation_p.W41*|CD22_uc002nzb.3_Nonsense_Mutation_p.W41*	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	41	Extracellular (Potential).|Ig-like V-type.				cell adhesion		protein binding|sugar binding	p.W41*(1)		ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CCTGCGTCTGGATCCCCTGCA	0.502													30	81					0	0	1	0	0
CD22	933	broad.mit.edu	37	19	35827133	35827133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35827133G>A	uc010edt.2	+	4	684	c.607G>A	c.(607-609)GAG>AAG	p.E203K	CD22_uc010xst.1_Missense_Mutation_p.E31K|CD22_uc010edu.2_Missense_Mutation_p.E203K|CD22_uc010edv.2_Missense_Mutation_p.E203K|CD22_uc002nzb.3_Missense_Mutation_p.E203K|CD22_uc010edx.2_5'Flank	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	203	Extracellular (Potential).|Ig-like C2-type 1.		E -> K.		cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CACCCGGAGCGAGCTCAAGTT	0.557													30	64					0	0	1	0	0
CD22	933	broad.mit.edu	37	19	35829246	35829247	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35829246_35829247CC>TT	uc010edt.2	+	6	1238_1239	c.1161_1162CC>TT	c.(1159-1164)CTCCCC>CTTTCC	p.P388S	CD22_uc010xst.1_Missense_Mutation_p.P216S|CD22_uc010edu.2_Intron|CD22_uc010edv.2_Missense_Mutation_p.P388S|CD22_uc002nzb.3_Intron|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	388	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CAAAGATCCTCCCCTGGCACGC	0.53													29	80					0	0	1	0	0
CD22	933	broad.mit.edu	37	19	35831879	35831879	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35831879C>T	uc010edt.2	+	7	1422	c.1345C>T	c.(1345-1347)CCC>TCC	p.P449S	CD22_uc010xst.1_Missense_Mutation_p.P277S|CD22_uc010edu.2_Missense_Mutation_p.P361S|CD22_uc010edv.2_Missense_Mutation_p.P449S|CD22_uc002nzb.3_Missense_Mutation_p.P272S|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	449	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	TTCCAGTAACCCCAGTGTTAC	0.522													19	53					0	0	1	0	0
CD22	933	broad.mit.edu	37	19	35832298	35832298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35832298C>T	uc010edt.2	+	8	1637	c.1560C>T	c.(1558-1560)CAC>CAT	p.H520H	CD22_uc010xst.1_Silent_p.H348H|CD22_uc010edu.2_Silent_p.H432H|CD22_uc010edv.2_Silent_p.H520H|CD22_uc002nzb.3_Silent_p.H343H|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	520	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CCGAGATTCACTCTGGAAACT	0.552													29	43					0	0	1	0	0
CD22	933	broad.mit.edu	37	19	35832673	35832673	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35832673C>T	uc010edt.2	+	9	1917	c.1840C>T	c.(1840-1842)CTG>TTG	p.L614L	CD22_uc010xst.1_Silent_p.L442L|CD22_uc010edu.2_Silent_p.L526L|CD22_uc010edv.2_Silent_p.L614L|CD22_uc002nzb.3_Silent_p.L437L|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	614	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	GAGTGCAACCCTGACCTGTGA	0.617													14	46					0	0	1	0	0
FFAR1	2864	broad.mit.edu	37	19	35842700	35842700	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35842700C>T	uc002nzc.2	+	1	256	c.246C>T	c.(244-246)TTC>TTT	p.F82F		NM_005303	NP_005294	O14842	FFAR1_HUMAN	free fatty acid receptor 1	82	Helical; Name=3; (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;4.58e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.67e-19)|all cancers(14;2.01e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)		Icosapent(DB00159)	GCCCCGTCTTCGCGGTGGCCC	0.701													4	10					0	0	1	0	0
FFAR1	2864	broad.mit.edu	37	19	35842810	35842810	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35842810G>A	uc002nzc.2	+	1	366	c.356G>A	c.(355-357)AGG>AAG	p.R119K		NM_005303	NP_005294	O14842	FFAR1_HUMAN	free fatty acid receptor 1	119	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;4.58e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.67e-19)|all cancers(14;2.01e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)		Icosapent(DB00159)	GCCTTCCGGAGGCCGTGCTAT	0.672													22	51					0	0	1	0	0
FFAR2	2867	broad.mit.edu	37	19	35940700	35940700	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35940700C>T	uc002nzg.2	+	2	164	c.84C>T	c.(82-84)GCC>GCT	p.A28A	FFAR2_uc010eea.2_Silent_p.A28A	NM_005306	NP_005297	O15552	FFAR2_HUMAN	free fatty acid receptor 2	28	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			ACCTCCTGGCCCTGCGGGCCT	0.632													14	79					0	0	1	0	0
DMKN	93099	broad.mit.edu	37	19	35993773	35993773	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:35993773G>A	uc002nzm.3	-	10	1333	c.1150C>T	c.(1150-1152)CCC>TCC	p.P384S	DMKN_uc002nzi.3_5'Flank|DMKN_uc002nzj.2_Missense_Mutation_p.P58S|DMKN_uc002nzk.3_Missense_Mutation_p.P31S|DMKN_uc002nzl.3_Missense_Mutation_p.P97S|DMKN_uc002nzo.3_Missense_Mutation_p.P373S|DMKN_uc002nzn.3_Missense_Mutation_p.P343S|DMKN_uc002nzw.2_Missense_Mutation_p.P40S|DMKN_uc002nzr.2_Missense_Mutation_p.P40S|DMKN_uc002nzp.2_Missense_Mutation_p.P78S|DMKN_uc002nzq.2_Missense_Mutation_p.P60S|DMKN_uc002nzt.2_Missense_Mutation_p.P31S|DMKN_uc002nzs.2_Missense_Mutation_p.P31S|DMKN_uc002nzu.2_Missense_Mutation_p.P31S|DMKN_uc002nzv.2_Missense_Mutation_p.P31S|DMKN_uc010xsv.1_Missense_Mutation_p.P31S|DMKN_uc010xsw.1_Missense_Mutation_p.P80S	NM_033317	NP_201574	Q6E0U4	DMKN_HUMAN	dermokine isoform 2 precursor	384						extracellular region				large_intestine(1)|ovary(1)|skin(1)	3	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CGGGTGCTGGGGGGCGGGACC	0.622													18	44					0	0	1	0	0
SBSN	374897	broad.mit.edu	37	19	36017667	36017667	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36017667C>T	uc002oae.1	-	2	558	c.488G>A	c.(487-489)GGA>GAA	p.G163E	SBSN_uc002oad.1_Missense_Mutation_p.G506E	NM_198538	NP_940940	Q6UWP8	SBSN_HUMAN	suprabasin isoform 2 precursor	163	Ala/Gly/His-rich.					extracellular region				ovary(1)	1	all_lung(56;1.62e-08)|Lung NSC(56;2.47e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CACTTCCTTTCCAGCCTGGTC	0.592													10	89					0	0	1	0	0
ATP4A	495	broad.mit.edu	37	19	36050801	36050801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36050801G>A	uc002oal.1	-	7	991	c.962C>T	c.(961-963)GCC>GTC	p.A321V	ATP4A_uc010eee.1_5'Flank	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	321	Lumenal (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	AATGCACATGGCCACAATAAA	0.547													31	58					0	0	1	0	0
ATP4A	495	broad.mit.edu	37	19	36051420	36051420	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36051420G>A	uc002oal.1	-	6	661	c.632C>T	c.(631-633)CCC>CTC	p.P211L	ATP4A_uc010eee.1_5'Flank	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	211	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	GATGTCGGCGGGCACTCTGTC	0.627													9	61					0	0	1	0	0
ATP4A	495	broad.mit.edu	37	19	36054167	36054167	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36054167C>T	uc002oal.1	-	3	189	c.160G>A	c.(160-162)GAC>AAC	p.D54N		NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	54	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	AGCTGGTGGTCGTTCTGTGTG	0.622													69	188					0	0	1	0	0
HAUS5	23354	broad.mit.edu	37	19	36110939	36110939	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36110939C>T	uc002oam.1	+	16	1483	c.1432C>T	c.(1432-1434)CCA>TCA	p.P478S		NM_015302	NP_056117	O94927	HAUS5_HUMAN	HAUS augmin-like complex, subunit 5	478					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle					0						CACGGTCCTCCCATCCATCCA	0.672													86	215					0	0	1	0	0
ZBTB32	27033	broad.mit.edu	37	19	36207515	36207515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36207515C>T	uc002oay.2	+	6	1535	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F	ZBTB32_uc002oaz.2_RNA|MLL4_uc010eei.2_5'Flank	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	442	C2H2-type 3.				DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCCTGGCCTCCATGCAGGCG	0.711											OREG0025433	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	69					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36212573	36212573	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36212573C>T	uc010eei.2	+	3	2324	c.2324C>T	c.(2323-2325)GCC>GTC	p.A775V		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	775					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTGGAAAAAGCCCGGATTGCG	0.607													6	25					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36215909	36215909	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36215909C>T	uc010eei.2	+	11	3449	c.3449C>T	c.(3448-3450)CCC>CTC	p.P1150L		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1150					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCCCCTGGCCCCTTTGCTTCT	0.592													29	41					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36216190	36216190	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36216190C>T	uc010eei.2	+	12	3598	c.3598C>T	c.(3598-3600)CCC>TCC	p.P1200S		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1200					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCCAGGGGGCCCCCCGATGGT	0.597													11	20					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36218811	36218811	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36218811C>T	uc010eei.2	+	19	4422	c.4422C>T	c.(4420-4422)ATC>ATT	p.I1474I		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1474					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGGTGGGCATCCTCATGCGGC	0.627													8	13					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36223190	36223190	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36223190C>T	uc010eei.2	+	29	5740	c.5740C>T	c.(5740-5742)CGT>TGT	p.R1914C		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1914					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAGACGTTCCCGTCGTCCCAG	0.642													7	13					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36224722	36224722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36224722C>T	uc010eei.2	+	31	7108	c.7108C>T	c.(7108-7110)CCC>TCC	p.P2370S		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	2370					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCCCCAGGTCCCCGATGGTCC	0.637													19	40					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36227703	36227703	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36227703C>T	uc010eei.2	+	32	7272	c.7272C>T	c.(7270-7272)TTC>TTT	p.F2424F		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	2424	FYR C-terminal.				chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGGATGGGTTCAGCGTTGAGG	0.577													27	67					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36228084	36228084	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36228084C>T	uc010eei.2	+	34	7470	c.7470C>T	c.(7468-7470)TTC>TTT	p.F2490F		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	2490	FYR C-terminal.				chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ACTATAAGTTCCGTTACCACC	0.632													5	7					0	0	1	0	0
U2AF1L4	199746	broad.mit.edu	37	19	36233574	36233574	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36233574G>A	uc002obg.2	-	8	915	c.606C>T	c.(604-606)TCC>TCT	p.S202S	TMEM149_uc002obb.2_5'Flank|TMEM149_uc002obc.2_5'Flank|TMEM149_uc002obd.3_5'Flank|TMEM149_uc010xsy.1_5'Flank|TMEM149_uc010eej.2_Intron|U2AF1L4_uc002obh.1_3'UTR|U2AF1L4_uc002obe.2_3'UTR|U2AF1L4_uc002obf.2_Silent_p.S178S|PSENEN_uc002obi.1_5'Flank|PSENEN_uc002obj.1_5'Flank|PSENEN_uc002obk.1_5'Flank			Q8WU68	U2AF4_HUMAN	Homo sapiens cDNA FLJ35525 fis, clone SPLEN2001650.	Error:Variant_position_missing_in_Q8WU68_after_alignment					mRNA processing|RNA splicing	nuclear speck|spliceosomal complex	nucleotide binding|RNA binding|zinc ion binding				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGTCCTGCCAGGAACATCTGT	0.597													28	103					0	0	1	0	0
C19orf55	148137	broad.mit.edu	37	19	36255778	36255778	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36255778C>T	uc002obq.1	+	6	640	c.567C>T	c.(565-567)TCC>TCT	p.S189S		NM_001039887	NP_001034976	Q2NL68	CS055_HUMAN	hypothetical protein LOC148137	189										ovary(1)	1	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGAACTCATCCCTGCTGGACC	0.627													8	32					0	0	1	0	0
C19orf55	148137	broad.mit.edu	37	19	36255969	36255969	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36255969C>T	uc002obq.1	+	7	734	c.661C>T	c.(661-663)CCC>TCC	p.P221S		NM_001039887	NP_001034976	Q2NL68	CS055_HUMAN	hypothetical protein LOC148137	221	Ser-rich.									ovary(1)	1	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTCCCTCAGCCCCAGCGATGC	0.627													56	213					0	0	1	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36271691	36271691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36271691C>T	uc002obr.1	+	10	887	c.802C>T	c.(802-804)CCC>TCC	p.P268S	ARHGAP33_uc002obs.1_Missense_Mutation_p.P268S|ARHGAP33_uc002obt.1_Missense_Mutation_p.P132S|ARHGAP33_uc010eel.2_5'Flank|ARHGAP33_uc002obv.1_5'Flank	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	268					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						CATCCCGGCTCCCCAGGGTAT	0.622													31	95					0	0	1	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36273299	36273299	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36273299C>T	uc002obr.1	+	13	1195	c.1110C>T	c.(1108-1110)ATC>ATT	p.I370I	ARHGAP33_uc002obs.1_Silent_p.I370I|ARHGAP33_uc002obt.1_Silent_p.I234I|ARHGAP33_uc010eel.2_5'UTR|ARHGAP33_uc002obv.1_5'Flank	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	370	Rho-GAP.				cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						GTGAGAGGATCCCGGAGCTGT	0.612													24	84					0	0	1	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278255	36278255	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36278255C>T	uc002obs.1	+	21	2390	c.2305C>T	c.(2305-2307)CCC>TCC	p.P769S	ARHGAP33_uc002obt.1_Missense_Mutation_p.P794S|ARHGAP33_uc010eel.2_Missense_Mutation_p.P518S|ARHGAP33_uc002obv.1_Missense_Mutation_p.P518S	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	822					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						TTCCCAATCCCCCTTCCACCG	0.701													10	53					0	0	1	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278576	36278576	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36278576C>T	uc002obs.1	+	21	2711	c.2626C>T	c.(2626-2628)CCC>TCC	p.P876S	ARHGAP33_uc002obt.1_Missense_Mutation_p.P873S|ARHGAP33_uc010eel.2_Intron|ARHGAP33_uc002obv.1_Missense_Mutation_p.P625S	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	1013					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						CTCCCCAGCCCCCAGGGAGTG	0.697													49	89					0	0	1	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278658	36278658	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36278658C>T	uc002obs.1	+	21	2793	c.2708C>T	c.(2707-2709)TCC>TTC	p.S903F	ARHGAP33_uc002obt.1_Missense_Mutation_p.S900F|ARHGAP33_uc010eel.2_Intron|ARHGAP33_uc002obv.1_Missense_Mutation_p.S652F	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	1064					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						CAGCCCAGTTCCCCAGCCCCA	0.667													10	84					0	0	1	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278912	36278912	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36278912C>T	uc002obs.1	+	21	3047	c.2962C>T	c.(2962-2964)CAC>TAC	p.H988Y	ARHGAP33_uc002obt.1_Missense_Mutation_p.H985Y|ARHGAP33_uc010eel.2_Intron|ARHGAP33_uc002obv.1_Missense_Mutation_p.H737Y	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	1149					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						TCCCCCTGACCACCTTGGCTA	0.667													6	71					0	0	1	0	0
PRODH2	58510	broad.mit.edu	37	19	36291092	36291092	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36291092G>C	uc002obx.1	-	11	1477	c.1459C>G	c.(1459-1461)CCC>GCC	p.P487A	uc002obw.1_5'Flank	NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	487					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GAGCCATAGGGAATGGACTTA	0.458													4	8					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36322207	36322207	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36322207C>T	uc002oby.2	-	26	3378	c.3378G>A	c.(3376-3378)CAG>CAA	p.Q1126Q	NPHS1_uc010eem.1_RNA	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	1126	Cytoplasmic (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCGTGGAGCTCTGAGTGTCCC	0.597													29	73					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36330297	36330297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36330297C>T	uc002oby.2	-	22	2951	c.2951G>A	c.(2950-2952)GGG>GAG	p.G984E	NPHS1_uc010eem.1_RNA	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	984	Fibronectin type-III.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ATAGTGGAACCCTGGAGTCCC	0.577													19	62					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36330466	36330466	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36330466G>A	uc002oby.2	-	21	2859	c.2859C>T	c.(2857-2859)ACC>ACT	p.T953T	NPHS1_uc010eem.1_5'Flank	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	953	Fibronectin type-III.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CGGAGTGTGGGGTCAGACTCA	0.557													21	98					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36330510	36330510	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36330510C>T	uc002oby.2	-	21	2816	c.2816_splice	c.e21-1	p.S939_splice	NPHS1_uc010eem.1_5'Flank	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor						cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCAGGGCGGCCTATGGGGAGA	0.483													17	70					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36332717	36332717	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36332717G>A	uc002oby.2	-	20	2715	c.2715C>T	c.(2713-2715)ACC>ACT	p.T905T	NPHS1_uc010eem.1_5'Flank	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	905	Ig-like C2-type 8.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CGTTGGCAATGGTCAGGAGGC	0.557													9	21					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36340552	36340552	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36340552C>T	uc002oby.2	-	6	612	c.612G>A	c.(610-612)GTG>GTA	p.V204V		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	204	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCCGGGGTGTCACCCTGGGAT	0.552													19	64					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36342177	36342177	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36342177G>A	uc002oby.2	-	3	384	c.384C>T	c.(382-384)ATC>ATT	p.I128I		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	128	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGATGGAGAGGATCACTCTGG	0.642													17	36					0	0	1	0	0
KIRREL2	84063	broad.mit.edu	37	19	36348040	36348040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36348040C>T	uc002ocb.3	+	1	231	c.19C>T	c.(19-21)CCC>TCC	p.P7S	KIRREL2_uc002obz.3_Missense_Mutation_p.P7S|KIRREL2_uc002oca.3_Missense_Mutation_p.P7S|KIRREL2_uc002occ.3_Missense_Mutation_p.P4S|KIRREL2_uc002ocd.3_Missense_Mutation_p.P4S	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	7					cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GATGCGGGTCCCCGCCCTCCT	0.632													20	47					0	0	1	0	0
KIRREL2	84063	broad.mit.edu	37	19	36349316	36349316	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36349316C>T	uc002ocb.3	+	3	430	c.218C>T	c.(217-219)TCC>TTC	p.S73F	KIRREL2_uc002obz.3_Missense_Mutation_p.S73F|KIRREL2_uc002oca.3_Missense_Mutation_p.S23F|KIRREL2_uc002occ.3_Missense_Mutation_p.S20F|KIRREL2_uc002ocd.3_Missense_Mutation_p.S70F	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	73	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCAGGGTGGTCCCGGTACTGG	0.557													25	56					0	0	1	0	0
KIRREL2	84063	broad.mit.edu	37	19	36351438	36351438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36351438C>T	uc002ocb.3	+	7	1009	c.797C>T	c.(796-798)TCT>TTT	p.S266F	KIRREL2_uc002obz.3_Missense_Mutation_p.S266F|KIRREL2_uc002oca.3_Missense_Mutation_p.S216F|KIRREL2_uc002occ.3_Missense_Mutation_p.S213F|KIRREL2_uc002ocd.3_Missense_Mutation_p.S263F	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	266	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AAAGGGGGCTCTCCGGTGCTC	0.642													20	69					0	0	1	0	0
APLP1	333	broad.mit.edu	37	19	36362863	36362863	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36362863G>A	uc002oce.2	+	6	913	c.775G>A	c.(775-777)GAG>AAG	p.E259K	APLP1_uc010xsz.1_Missense_Mutation_p.E220K|APLP1_uc002ocf.2_Missense_Mutation_p.E259K|APLP1_uc002ocg.2_Missense_Mutation_p.E162K|APLP1_uc010xta.1_Missense_Mutation_p.E253K	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	259	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TTACTTCGTGGAGCCTCCGCA	0.622													50	173					0	0	1	0	0
APLP1	333	broad.mit.edu	37	19	36370056	36370056	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36370056C>T	uc002oce.2	+	16	1929	c.1791C>T	c.(1789-1791)GTC>GTT	p.V597V	APLP1_uc010xsz.1_Silent_p.V558V|APLP1_uc002ocf.2_Silent_p.V598V|APLP1_uc002ocg.2_Silent_p.V501V|APLP1_uc010xta.1_Silent_p.V591V	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	597	Helical; (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCCTCATCGTCCTCTCCATGC	0.642													27	46					0	0	1	0	0
APLP1	333	broad.mit.edu	37	19	36370284	36370284	+	Missense_Mutation	SNP	G	A	A	rs147200750		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36370284G>A	uc002oce.2	+	17	2032	c.1894G>A	c.(1894-1896)GAA>AAA	p.E632K	APLP1_uc010xsz.1_Missense_Mutation_p.E593K|APLP1_uc002ocf.2_Missense_Mutation_p.E633K|APLP1_uc002ocg.2_Missense_Mutation_p.E536K|APLP1_uc010xta.1_Missense_Mutation_p.E626K	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	632	Cytoplasmic (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCAGCTCCGCGAACTGCAGCG	0.672													30	96					0	0	1	0	0
NFKBID	84807	broad.mit.edu	37	19	36387009	36387009	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36387009G>A	uc002oci.1	-	9	1053	c.479C>T	c.(478-480)GCC>GTC	p.A160V	NFKBID_uc002och.1_5'UTR|NFKBID_uc002ocj.1_Missense_Mutation_p.A175V	NM_139239	NP_640332	Q8NI38	IKBD_HUMAN	nuclear factor of kappa light polypeptide gene	160	ANK 4.				inflammatory response	nucleus					0						GGCCAGGATGGCCGTGTGGAG	0.642													10	106					0	0	1	0	0
LRFN3	79414	broad.mit.edu	37	19	36431004	36431004	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36431004C>T	uc002oco.2	+	2	1129	c.677C>T	c.(676-678)TCC>TTC	p.S226F		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	226	Extracellular (Potential).|LRR 7.				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CCACTCTTCTCCCGCCTGCCC	0.701													50	130					0	0	1	0	0
TBCB	1155	broad.mit.edu	37	19	36616633	36616633	+	Silent	SNP	C	T	T	rs146159771		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36616633C>T	uc002odg.1	+	6	1259	c.684C>T	c.(682-684)GTC>GTT	p.V228V	TBCB_uc002odh.1_Silent_p.V209V	NM_001281	NP_001272	Q99426	TBCB_HUMAN	cytoskeleton associated protein 1	228					'de novo' posttranslational protein folding|cell differentiation|nervous system development	cytoplasm|microtubule	protein binding				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			AGCCAGCAGTCGTGACGGTGG	0.572													97	224					0	0	1	0	0
ZFP82	284406	broad.mit.edu	37	19	36884731	36884731	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36884731C>T	uc002ody.1	-	5	746	c.511G>A	c.(511-513)GAA>AAA	p.E171K		NM_133466	NP_597723	Q8N141	ZFP82_HUMAN	zinc finger protein 82 homolog	171	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						TCCTTACATTCATAGGGTTTA	0.413													10	73					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	36912833	36912833	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36912833G>A	uc002odz.1	+	1		c.758G>A								Homo sapiens cDNA FLJ35203 fis, clone PLACE6018441, moderately similar to Mus musculus peroxisomal long chain acyl-CoA thioesterase Ib (Pte1b) gene.																		AAGGGGTGCGGAGCGATTCGG	0.662													7	24					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	36913052	36913052	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:36913052C>T	uc002odz.1	+	1		c.977C>T								Homo sapiens cDNA FLJ35203 fis, clone PLACE6018441, moderately similar to Mus musculus peroxisomal long chain acyl-CoA thioesterase Ib (Pte1b) gene.																		TGGAGTACTTCGAAGAAGCCC	0.507													50	113					0	0	1	0	0
ZNF260	339324	broad.mit.edu	37	19	37005709	37005709	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37005709G>A	uc002oee.1	-	4	1276	c.432C>T	c.(430-432)GCC>GCT	p.A144A	ZNF260_uc002oed.1_Silent_p.A141A|ZNF260_uc010eey.1_Silent_p.A141A|ZNF260_uc002oef.1_Silent_p.A141A	NM_001012756	NP_001012774	Q3ZCT1	ZN260_HUMAN	zinc finger protein 260	144	C2H2-type 4.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TGCCGTTAAAGGCTTTGCCAC	0.393													75	166					0	0	1	0	0
ZNF382	84911	broad.mit.edu	37	19	37100898	37100898	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37100898C>T	uc002oek.2	+	3	195	c.82C>T	c.(82-84)CAG>TAG	p.Q28*	ZNF382_uc010efa.2_Intron|ZNF382_uc010efb.2_Nonsense_Mutation_p.Q27*|ZNF382_uc002oel.2_Nonsense_Mutation_p.Q28*	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	28	Mediates interaction with TRIM28 (By similarity).|KRAB.|Represses transcription (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			AGACCCTGCTCAGAAGGCGCT	0.478													40	82					0	0	1	0	0
ZNF461	92283	broad.mit.edu	37	19	37130142	37130142	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37130142G>A	uc002oem.2	-	6	1333	c.1105C>T	c.(1105-1107)CGC>TGC	p.R369C	ZNF461_uc002oen.2_Missense_Mutation_p.R338C|ZNF461_uc010xtj.1_Missense_Mutation_p.R346C	NM_153257	NP_694989	Q8TAF7	ZN461_HUMAN	gonadotropin inducible transcription repressor	369	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			AGATGTGAGCGATGCCTAAAA	0.418													25	62					0	0	1	0	0
ZNF567	163081	broad.mit.edu	37	19	37211306	37211306	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37211306C>T	uc010xtl.1	+	6	1902	c.1680C>T	c.(1678-1680)TCC>TCT	p.S560S	ZNF567_uc002oeo.1_Silent_p.S560S|ZNF567_uc010xtk.1_Silent_p.S560S|ZNF567_uc002oep.3_Silent_p.S529S|ZNF567_uc002oeq.1_Silent_p.S529S	NM_152603	NP_689816	Q8N184	ZN567_HUMAN	zinc finger protein 567	560					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			GCCAGAAATCCTATGAATGTC	0.413													11	114					0	0	1	0	0
ZNF568	374900	broad.mit.edu	37	19	37488068	37488068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37488068C>T	uc010efg.2	+	10	1990	c.1433C>T	c.(1432-1434)TCA>TTA	p.S478L	ZNF568_uc010xtn.1_Missense_Mutation_p.S416L|uc010efi.2_Missense_Mutation_p.S296L|uc010efj.2_Missense_Mutation_p.S296L			Q3ZCX4	ZN568_HUMAN	SubName: Full=cDNA FLJ57578, moderately similar to Mus musculus zinc finger protein 568 (Zfp568), mRNA;	515	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGTTGTGCCTCACAGCTGAGT	0.428													3	12					0	0	1	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643428	37643428	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37643428C>T	uc002ofo.1	-	5	1604	c.1373G>A	c.(1372-1374)CGA>CAA	p.R458Q	ZNF585A_uc002ofm.1_Missense_Mutation_p.R403Q|ZNF585A_uc002ofn.1_Missense_Mutation_p.R403Q	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	458	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGTGTGAATTCGTTTATGAAC	0.398													52	161					0	0	1	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677770	37677770	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37677770G>A	uc002ofq.2	-	5	923	c.669C>T	c.(667-669)TTC>TTT	p.F223F	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Silent_p.F37F	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	223	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGTTATAAGGGAAACCTTTCC	0.388													48	100					0	0	1	0	0
ZNF585B	92285	broad.mit.edu	37	19	37680644	37680644	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37680644G>A	uc002ofq.2	-	4	465	c.211C>T	c.(211-213)CCT>TCT	p.P71S	ZNF585B_uc002ofr.1_5'UTR	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	71	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTGGTTTAGGAACTTGATAC	0.478													28	63					0	0	1	0	0
ZNF527	84503	broad.mit.edu	37	19	37879797	37879797	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37879797C>T	uc010efk.1	+	5	957	c.846C>T	c.(844-846)GCC>GCT	p.A282A	ZNF527_uc002ogf.3_Silent_p.A250A|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	282	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GTGGTGATGCCTTTAGCTGTT	0.383													45	134					0	0	1	0	0
ZNF569	148266	broad.mit.edu	37	19	37904945	37904945	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37904945C>T	uc002ogi.2	-	6	1173	c.615G>A	c.(613-615)CTG>CTA	p.L205L	ZNF569_uc002ogh.2_Silent_p.L46L|ZNF569_uc002ogj.2_Silent_p.L229L	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	205	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TATGAATTCTCAGATGTCTGA	0.363													27	72					0	0	1	0	0
ZNF569	148266	broad.mit.edu	37	19	37905027	37905027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37905027G>A	uc002ogi.2	-	6	1091	c.533C>T	c.(532-534)TCA>TTA	p.S178L	ZNF569_uc002ogh.2_Missense_Mutation_p.S19L|ZNF569_uc002ogj.2_Missense_Mutation_p.S202L	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AAAATGGGATGAGCTATTACC	0.353													30	46					0	0	1	0	0
ZNF570	148268	broad.mit.edu	37	19	37975632	37975632	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:37975632C>T	uc002ogk.1	+	5	1637	c.1108C>T	c.(1108-1110)CGT>TGT	p.R370C	ZNF570_uc010efl.1_Missense_Mutation_p.R426C|ZNF570_uc010xtr.1_Missense_Mutation_p.R167C	NM_144694	NP_653295	Q96NI8	ZN570_HUMAN	zinc finger protein 570	370	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATTTAGCCTTCGTGCATACCT	0.428													8	96					0	0	1	0	0
ZNF540	163255	broad.mit.edu	37	19	38102515	38102515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38102515C>T	uc002ogq.2	+	5	666	c.334C>T	c.(334-336)CGT>TGT	p.R112C	ZNF540_uc002ogu.2_Missense_Mutation_p.R112C|ZNF540_uc010efq.2_Missense_Mutation_p.R80C	NM_152606	NP_689819	Q8NDQ6	ZN540_HUMAN	zinc finger protein 540	112					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TAAAACTCTTCGTCTGAAAGG	0.333													25	194					0	0	1	0	0
ZNF573	126231	broad.mit.edu	37	19	38229537	38229537	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38229537G>A	uc002ohe.2	-	4	1876	c.1854C>T	c.(1852-1854)GCC>GCT	p.A618A	ZNF573_uc010efs.2_Silent_p.A531A|ZNF573_uc002ohd.2_Silent_p.A616A|ZNF573_uc002ohf.2_Silent_p.A560A|ZNF573_uc002ohg.2_Silent_p.A530A	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	598	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			CACGACTGAAGGCCTTCCCAC	0.403													22	102					0	0	1	0	0
ZNF573	126231	broad.mit.edu	37	19	38230103	38230103	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38230103T>C	uc002ohe.2	-	4	1310	c.1288A>G	c.(1288-1290)AAA>GAA	p.K430E	ZNF573_uc010efs.2_Missense_Mutation_p.K343E|ZNF573_uc002ohd.2_Missense_Mutation_p.K428E|ZNF573_uc002ohf.2_Missense_Mutation_p.K372E|ZNF573_uc002ohg.2_Missense_Mutation_p.K342E	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	410	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			TGATGTTGTTTAAGGTAGCCA	0.358													73	179					0	0	1	0	0
ZNF573	126231	broad.mit.edu	37	19	38230307	38230307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38230307C>T	uc002ohe.2	-	4	1106	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	ZNF573_uc010efs.2_Missense_Mutation_p.E275K|ZNF573_uc002ohd.2_Missense_Mutation_p.E360K|ZNF573_uc002ohf.2_Missense_Mutation_p.E304K|ZNF573_uc002ohg.2_Missense_Mutation_p.E274K	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	342	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			TTCTTACACTCCTTACATTCA	0.378													23	94					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38572881	38572881	+	Missense_Mutation	SNP	C	T	T	rs147366609		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38572881C>T	uc002ohk.2	+	3	1185	c.676C>T	c.(676-678)CGC>TGC	p.R226C		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	226					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GAACGAGTTCCGCAGCGAGCA	0.706													21	70					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38573155	38573155	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38573155C>T	uc002ohk.2	+	3	1459	c.950C>T	c.(949-951)TCC>TTC	p.S317F		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	317					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GCTGGGCGTTCCCCGGGGGAG	0.687													4	20					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38573709	38573709	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38573709C>T	uc002ohk.2	+	3	2013	c.1504C>T	c.(1504-1506)CGC>TGC	p.R502C		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	502					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCTGGGCGCCCGCTACTACCA	0.617													19	38					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38573729	38573729	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38573729C>T	uc002ohk.2	+	3	2033	c.1524C>T	c.(1522-1524)TTC>TTT	p.F508F		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	508					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			AGGATTACTTCGTGGGCAAAG	0.552													22	30					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38610501	38610501	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38610501G>A	uc002ohk.2	+	9	3356	c.2847G>A	c.(2845-2847)AGG>AGA	p.R949R		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	949					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			AGGACATAAGGGAGATAGTGC	0.532													12	37					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38655202	38655202	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38655202C>T	uc002ohk.2	+	15	4373	c.3864C>T	c.(3862-3864)TTC>TTT	p.F1288F		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1288					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			ACCGCTGGTTCGACCCCCTGG	0.607													9	93					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38692558	38692558	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38692558C>T	uc002ohk.2	+	20	5550	c.5041C>T	c.(5041-5043)CCG>TCG	p.P1681S		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1681					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCCGGACATCCCGCCTGCACA	0.657													16	46					0	0	1	0	0
C19orf33	64073	broad.mit.edu	37	19	38795318	38795318	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38795318G>A	uc002ohu.1	+	3	291	c.193G>A	c.(193-195)GAT>AAT	p.D65N	YIF1B_uc002ohw.2_3'UTR|YIF1B_uc002ohx.2_3'UTR|YIF1B_uc010xtx.1_3'UTR|YIF1B_uc010xty.1_3'UTR|YIF1B_uc002oia.2_3'UTR|YIF1B_uc002ohy.2_3'UTR|YIF1B_uc002ohz.2_3'UTR|C19orf33_uc002ohv.1_Silent_p.R84R	NM_033520	NP_277055	Q9GZP8	IMUP_HUMAN	HAI-2 related small protein	65						nucleus					0	all_cancers(60;1.07e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TTCGGACACGGATGTGAAGGT	0.692													17	32					0	0	1	0	0
YIF1B	90522	broad.mit.edu	37	19	38799639	38799639	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38799639G>A	uc002ohz.2	-	4	510	c.461C>T	c.(460-462)GCC>GTC	p.A154V	YIF1B_uc002ohw.2_Missense_Mutation_p.A123V|YIF1B_uc002ohx.2_Missense_Mutation_p.A139V|YIF1B_uc010xtx.1_Missense_Mutation_p.A137V|YIF1B_uc010xty.1_Missense_Mutation_p.A123V|YIF1B_uc002oia.2_Missense_Mutation_p.A151V|YIF1B_uc002ohy.2_Missense_Mutation_p.A151V|YIF1B_uc002oib.2_Missense_Mutation_p.A151V	NM_001039672	NP_001034761	Q5BJH7	YIF1B_HUMAN	Yip1 interacting factor homolog B isoform 5	154	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(60;1.07e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GAGGTCCGGGGCATTGACGTC	0.657													4	12					0	0	1	0	0
CATSPERG	57828	broad.mit.edu	37	19	38847158	38847158	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38847158G>A	uc002oih.3	+	10	1257	c.1170G>A	c.(1168-1170)CAG>CAA	p.Q390Q	CATSPERG_uc002oig.3_Silent_p.Q390Q|CATSPERG_uc002oif.3_Silent_p.Q30Q|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	390	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						TGCCCAGGCAGTGGTCTGTGT	0.607													23	78					0	0	1	0	0
CATSPERG	57828	broad.mit.edu	37	19	38855747	38855747	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38855747C>T	uc002oih.3	+	22	2690	c.2603C>T	c.(2602-2604)CCC>CTC	p.P868L	CATSPERG_uc002oig.3_Missense_Mutation_p.P828L|CATSPERG_uc002oif.3_Missense_Mutation_p.P508L|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	868	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CACCTGGGGCCCCATATGCAA	0.602													29	69					0	0	1	0	0
CATSPERG	57828	broad.mit.edu	37	19	38858758	38858758	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38858758C>T	uc002oih.3	+	26	3088	c.3001C>T	c.(3001-3003)CAC>TAC	p.H1001Y	CATSPERG_uc002oig.3_Missense_Mutation_p.H961Y|CATSPERG_uc002oif.3_Missense_Mutation_p.H641Y|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	1001	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CATCATGTCCCACGAGAGCCC	0.602													40	85					0	0	1	0	0
CATSPERG	57828	broad.mit.edu	37	19	38860616	38860616	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38860616C>T	uc002oih.3	+	27	3112	c.3025C>T	c.(3025-3027)CTC>TTC	p.L1009F	CATSPERG_uc002oig.3_Missense_Mutation_p.L969F|CATSPERG_uc002oif.3_Missense_Mutation_p.L649F|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	1009	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						TTGCAGGTGGCTCTGTCTGGA	0.512													68	154					0	0	1	0	0
CATSPERG	57828	broad.mit.edu	37	19	38861371	38861371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38861371C>T	uc002oih.3	+	29	3506	c.3419C>T	c.(3418-3420)TCC>TTC	p.S1140F	CATSPERG_uc002oig.3_Missense_Mutation_p.S1100F|CATSPERG_uc002oif.3_Missense_Mutation_p.S780F|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	1140	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						ATGTTCAGCTCCAGGATGACA	0.562													26	114					0	0	1	0	0
GGN	199720	broad.mit.edu	37	19	38877095	38877095	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38877095C>T	uc002oij.1	-	3	942	c.807G>A	c.(805-807)GGG>GGA	p.G269G	GGN_uc002oik.1_Intron|GGN_uc010efy.1_Silent_p.G186G	NM_152657	NP_689870	Q86UU5	GGN_HUMAN	gametogenetin	269	Interaction with GGNBP1 (By similarity).|Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis						0	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CTCCGCCGCCCCCCAGCGAAG	0.652													17	44					0	0	1	0	0
RASGRP4	115727	broad.mit.edu	37	19	38910780	38910780	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38910780G>T	uc002oir.2	-	5	714	c.500C>A	c.(499-501)TCT>TAT	p.S167Y	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Missense_Mutation_p.S167Y|RASGRP4_uc010xub.1_Missense_Mutation_p.S167Y|RASGRP4_uc010xuc.1_Missense_Mutation_p.S167Y|RASGRP4_uc010xud.1_Missense_Mutation_p.S167Y|RASGRP4_uc010xue.1_Missense_Mutation_p.S167Y|RASGRP4_uc010egb.2_Missense_Mutation_p.S167Y	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	167	N-terminal Ras-GEF.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CAGGTCAGAAGAGTCTCCCAG	0.597													5	35					0.00198382	0.0019852	1	1	0
RYR1	6261	broad.mit.edu	37	19	38934840	38934840	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38934840G>A	uc002oit.2	+	6	606	c.476G>A	c.(475-477)GGA>GAA	p.G159E	RYR1_uc002oiu.2_Missense_Mutation_p.G159E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	159	Cytoplasmic.|MIR 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGGTCTGAAGGAGAAAAGGTC	0.602													26	46					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38935268	38935268	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38935268C>T	uc002oit.2	+	7	712	c.582C>T	c.(580-582)TTC>TTT	p.F194F	RYR1_uc002oiu.2_Silent_p.F194F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	194	Cytoplasmic.|MIR 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACGCTTCCTTCATGCAGACAC	0.622													10	19					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38937179	38937179	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38937179C>T	uc002oit.2	+	8	829	c.699C>T	c.(697-699)TCC>TCT	p.S233S	RYR1_uc002oiu.2_Silent_p.S233S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	233	MIR 3.|Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TGACCATTTCCCCTGCTGACA	0.587													26	75					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38942416	38942416	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38942416C>T	uc002oit.2	+	12	1265	c.1135C>T	c.(1135-1137)CAG>TAG	p.Q379*	RYR1_uc002oiu.2_Nonsense_Mutation_p.Q379*	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	379	Cytoplasmic.|MIR 5.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CATGCTGCACCAGGAGGGCCA	0.632													18	65					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38949934	38949934	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38949934G>A	uc002oit.2	+	19	2446	c.2316G>A	c.(2314-2316)CTG>CTA	p.L772L	RYR1_uc002oiu.2_Silent_p.L772L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	772	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCTTCAACCTGGACGGGCTCT	0.602													14	46					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38951115	38951115	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38951115C>T	uc002oit.2	+	20	2591	c.2461C>T	c.(2461-2463)CAT>TAT	p.H821Y	RYR1_uc002oiu.2_Missense_Mutation_p.H821Y	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	821	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGAGCGACTCCATCTTGAACC	0.647													40	120					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38954452	38954452	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38954452G>A	uc002oit.2	+	22	2878	c.2748G>A	c.(2746-2748)GAG>GAA	p.E916E	RYR1_uc002oiu.2_Silent_p.E916E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	916	1.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CAGAGCCTGAGAGGAACTACA	0.622													37	95					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38958423	38958423	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38958423G>A	uc002oit.2	+	25	3482	c.3352G>A	c.(3352-3354)GAG>AAG	p.E1118K	RYR1_uc002oiu.2_Missense_Mutation_p.E1118K	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1118	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGGAGCTGACGAGCTGGCCTA	0.632													22	50					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38959746	38959746	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38959746C>T	uc002oit.2	+	26	3652	c.3522C>T	c.(3520-3522)TCC>TCT	p.S1174S	RYR1_uc002oiu.2_Silent_p.S1174S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1174	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACTCAGGCTCCGAAACAGCCT	0.423													24	65					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38959949	38959949	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38959949C>T	uc002oit.2	+	27	3691	c.3561C>T	c.(3559-3561)TTC>TTT	p.F1187F	RYR1_uc002oiu.2_Silent_p.F1187F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1187	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	cACCAGGCTTCCTGCCCGTCT	0.338													28	62					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38964208	38964208	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38964208G>A	uc002oit.2	+	28	4087	c.3957G>A	c.(3955-3957)GAG>GAA	p.E1319E	RYR1_uc002oiu.2_Silent_p.E1319E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1319	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCCCCGCCGAGGACGAGGCCC	0.692													3	3					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38968367	38968367	+	Silent	SNP	G	A	A	rs113831421		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38968367G>A	uc002oit.2	+	30	4441	c.4311G>A	c.(4309-4311)AGG>AGA	p.R1437R	RYR1_uc002oiu.2_Silent_p.R1437R	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1437	Cytoplasmic.|B30.2/SPRY 3.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACTCCGTGAGGGTCTTTGCTG	0.597													11	45					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38976471	38976471	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38976471C>T	uc002oit.2	+	34	5306	c.5176C>T	c.(5176-5178)CGC>TGC	p.R1726C	RYR1_uc002oiu.2_Missense_Mutation_p.R1726C	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1726	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTGCCGCAGCCGCCGCTCCAT	0.647													33	69					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38976513	38976513	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38976513G>A	uc002oit.2	+	34	5348	c.5218G>A	c.(5218-5220)GAG>AAG	p.E1740K	RYR1_uc002oiu.2_Missense_Mutation_p.E1740K	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1740	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCTCACGCCTGAGACCCGCGC	0.632													28	93					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38976675	38976675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38976675G>A	uc002oit.2	+	34	5510	c.5380G>A	c.(5380-5382)GCC>ACC	p.A1794T	RYR1_uc002oiu.2_Missense_Mutation_p.A1794T	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1794	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGCAGCAGAGGCCCCGGCCCG	0.716													17	40					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38983185	38983185	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38983185C>T	uc002oit.2	+	38	6313	c.6183C>T	c.(6181-6183)AGC>AGT	p.S2061S	RYR1_uc002oiu.2_Silent_p.S2061S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2061	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCCTGGGCAGCCGCCTCATGA	0.517													9	81					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38990558	38990558	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38990558G>A	uc002oit.2	+	45	7355	c.7225G>A	c.(7225-7227)GAA>AAA	p.E2409K	RYR1_uc002oiu.2_Missense_Mutation_p.E2409K|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2409	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTTTGGTGAGGAACCGCCTGA	0.632													36	93					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38993182	38993182	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38993182G>A	uc002oit.2	+	48	7780	c.7650G>A	c.(7648-7650)CTG>CTA	p.L2550L	RYR1_uc002oiu.2_Silent_p.L2550L|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2550	Cytoplasmic.|6 X approximate repeats.		L -> V.		muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CGCTGGCGCTGAACCGCTACC	0.652													5	25					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38995970	38995970	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:38995970G>A	uc002oit.2	+	53	8462	c.8332G>A	c.(8332-8334)GGA>AGA	p.G2778R	RYR1_uc002oiu.2_Missense_Mutation_p.G2778R|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2778	5.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTGGTCCTATGGAGAGAACAT	0.602													12	20					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39001159	39001159	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39001159G>A	uc002oit.2	+	59	9084	c.8954G>A	c.(8953-8955)CGA>CAA	p.R2985Q	RYR1_uc002oiu.2_Missense_Mutation_p.R2985Q|RYR1_uc002oiv.1_5'UTR|RYR1_uc010xuf.1_5'Flank	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2985	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGCAGTGGGCGAGTGGAAAAG	0.562													20	106					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39008129	39008129	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39008129C>T	uc002oit.2	+	66	9946	c.9816C>T	c.(9814-9816)ATC>ATT	p.I3272I	RYR1_uc002oiu.2_Silent_p.I3272I|RYR1_uc002oiv.1_Silent_p.I192I|RYR1_uc010xuf.1_Silent_p.I192I	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3272					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCATCGAGATCACGCTGCCCA	0.697													23	33					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39008179	39008179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39008179C>T	uc002oit.2	+	66	9996	c.9866C>T	c.(9865-9867)CCC>CTC	p.P3289L	RYR1_uc002oiu.2_Missense_Mutation_p.P3289L|RYR1_uc002oiv.1_Missense_Mutation_p.P209L|RYR1_uc010xuf.1_Missense_Mutation_p.P209L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3289					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GAGCGCGGGCCCGAGGCACCC	0.667													20	31					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39019006	39019006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39019006C>T	uc002oit.2	+	74	11015	c.10885C>T	c.(10885-10887)CGG>TGG	p.R3629W	RYR1_uc002oiu.2_Missense_Mutation_p.R3624W|RYR1_uc002oiv.1_Missense_Mutation_p.R544W|RYR1_uc010xuf.1_Missense_Mutation_p.R549W	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3629					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CAAACAGCGCCGGCGGGCAGT	0.612													21	75					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39019623	39019623	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39019623G>A	uc002oit.2	+	76	11197	c.11067G>A	c.(11065-11067)GAG>GAA	p.E3689E	RYR1_uc002oiu.2_Silent_p.E3684E|RYR1_uc002oiv.1_Silent_p.E604E|RYR1_uc010xuf.1_Silent_p.E609E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3689					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	aggaggaagaggtggaagaga	0.498													7	11					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39023355	39023355	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39023355G>A	uc002oit.2	+	78	11368	c.11238G>A	c.(11236-11238)GAG>GAA	p.E3746E	RYR1_uc002oiu.2_Silent_p.E3741E|RYR1_uc002oiv.1_Silent_p.E661E|RYR1_uc010xuf.1_Silent_p.E666E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3746					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AAGCTGAAGAGGAGGTTGAGG	0.562													19	44					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39039051	39039051	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39039051C>T	uc002oit.2	+	89	12403	c.12273C>T	c.(12271-12273)GAC>GAT	p.D4091D	RYR1_uc002oiu.2_Silent_p.D4086D|RYR1_uc002oiv.1_Silent_p.D1000D	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4091					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCAAGAAGGACTTCCAGAAGG	0.403													40	69					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39057574	39057574	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39057574C>T	uc002oit.2	+	92	13591	c.13461C>T	c.(13459-13461)CTC>CTT	p.L4487L	RYR1_uc002oiu.2_Silent_p.L4482L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4487	Pro-rich.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGGAGGAGCTCCCGCCAGAGC	0.617													4	13					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39062705	39062705	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39062705C>T	uc002oit.2	+	95	13923	c.13793C>T	c.(13792-13794)GCT>GTT	p.A4598V	RYR1_uc002oiu.2_Missense_Mutation_p.A4593V	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4598					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGCTCAGCTGCTGGGGATGTG	0.602													35	71					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39066565	39066565	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39066565C>T	uc002oit.2	+	97	14266	c.14136C>T	c.(14134-14136)TTC>TTT	p.F4712F	RYR1_uc002oiu.2_Silent_p.F4707F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4712					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCAGGTCTTTCCCTAGCAACT	0.557													28	70					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39068823	39068823	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39068823C>T	uc002oit.2	+	99	14473	c.14343C>T	c.(14341-14343)TTC>TTT	p.F4781F	RYR1_uc002oiu.2_Silent_p.F4776F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4781					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCTGGAAGTTCGGGGTCATCT	0.607													5	34					0	0	1	0	0
MAP4K1	11184	broad.mit.edu	37	19	39087996	39087996	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39087996C>T	uc002oix.1	-	24	1915	c.1807G>A	c.(1807-1809)GAC>AAC	p.D603N	MAP4K1_uc002oiw.1_Missense_Mutation_p.D190N|MAP4K1_uc002oiy.1_Missense_Mutation_p.D603N|MAP4K1_uc010xug.1_3'UTR	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	603	CNH.				activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CCTTTGGTGTCCTGGATCTTG	0.592													30	311					0	0	1	0	0
CAPN12	147968	broad.mit.edu	37	19	39228192	39228192	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39228192C>T	uc002ojd.1	-	9	1361	c.1052G>A	c.(1051-1053)GGG>GAG	p.G351E	CAPN12_uc010egd.1_5'Flank|CAPN12_uc002ojc.1_5'Flank	NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	351	Domain III.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			CCAGCCGCCCCCCTCCGGGCT	0.692													17	32					0	0	1	0	0
HNRNPL	3191	broad.mit.edu	37	19	39336578	39336578	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39336578G>A	uc010xul.1	-	3	550	c.539C>T	c.(538-540)TCC>TTC	p.S180F	HNRNPL_uc010xum.1_Missense_Mutation_p.S47F|HNRNPL_uc010xun.1_5'Flank	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	180					nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			CCCAGGGCGGGAGATCTTCTG	0.542													44	109					0	0	1	0	0
SIRT2	22933	broad.mit.edu	37	19	39384091	39384092	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39384091_39384092GG>AA	uc002ojt.1	-	4	388_389	c.188_189CC>TT	c.(187-189)ACC>ATT	p.T63I	SIRT2_uc010egh.1_Missense_Mutation_p.T26I|SIRT2_uc010egi.1_Missense_Mutation_p.T26I|SIRT2_uc002ojs.1_Missense_Mutation_p.T43I|SIRT2_uc002oju.1_Missense_Mutation_p.T26I|SIRT2_uc010egj.1_Missense_Mutation_p.T26I|SIRT2_uc002ojv.1_Missense_Mutation_p.T63I	NM_012237	NP_036369	Q8IXJ6	SIRT2_HUMAN	sirtuin 2 isoform 1	63					cell division|chromatin silencing at rDNA|chromatin silencing at telomere|mitosis|negative regulation of striated muscle tissue development|protein ADP-ribosylation|regulation of exit from mitosis|regulation of phosphorylation|response to redox state	chromatin silencing complex|cytoplasm|microtubule	histone acetyltransferase binding|histone deacetylase binding|NAD+ binding|NAD-dependent histone deacetylase activity|transcription factor binding|tubulin deacetylase activity|ubiquitin binding|zinc ion binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00125)|LUSC - Lung squamous cell carcinoma(53;0.00191)			CCCCTTCCAAGGTCAGCTCGTC	0.614													13	28					0	0	1	0	0
NFKBIB	4793	broad.mit.edu	37	19	39396066	39396066	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39396066C>T	uc002ojw.2	+	3	568	c.510C>T	c.(508-510)CCC>CCT	p.P170P	NFKBIB_uc002ojx.2_Silent_p.P138P|NFKBIB_uc002ojy.2_Silent_p.P170P	NM_002503	NP_002494	Q15653	IKBB_HUMAN	nuclear factor of kappa light polypeptide gene	170					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleus	protein binding|signal transducer activity|transcription coactivator activity			lung(1)|kidney(1)	2	all_cancers(60;4.39e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			ACCGTACTCCCGACACCAACC	0.657													28	64					0	0	1	0	0
PAPL	390928	broad.mit.edu	37	19	39576015	39576015	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39576015C>T	uc002oki.2	+	2	380	c.106C>T	c.(106-108)CAT>TAT	p.H36Y	PAPL_uc010egl.2_Missense_Mutation_p.H36Y	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	36						extracellular region	acid phosphatase activity|metal ion binding				0						AGAGCAAGTCCATCTGTCTTA	0.582													36	116					0	0	1	0	0
PAK4	10298	broad.mit.edu	37	19	39660289	39660289	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39660289C>T	uc002okj.1	+	4	557	c.96C>T	c.(94-96)TTC>TTT	p.F32F	PAK4_uc002okl.1_Silent_p.F32F|PAK4_uc002okn.1_Silent_p.F32F|PAK4_uc002okm.1_Silent_p.F32F|PAK4_uc002oko.1_Silent_p.F32F|PAK4_uc002okp.1_Silent_p.F32F	NM_001014831	NP_001014831	O96013	PAK4_HUMAN	p21-activated kinase 4 isoform 1	32	Linker.				cellular component movement|signal transduction	Golgi apparatus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(3)|ovary(1)	4	all_cancers(60;1.03e-07)|all_epithelial(25;9.66e-08)|all_lung(34;1.58e-07)|Lung NSC(34;1.88e-07)|Ovarian(47;0.0454)		Epithelial(26;4.82e-25)|all cancers(26;2.94e-22)|Lung(45;0.000797)|LUSC - Lung squamous cell carcinoma(53;0.00113)			AGCAGAAGTTCACGGGGCTGC	0.677													20	61					0	0	1	0	0
NCCRP1	342897	broad.mit.edu	37	19	39691306	39691306	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39691306C>T	uc002okq.1	+	6	757	c.738C>T	c.(736-738)TTC>TTT	p.F246F		NM_001001414	NP_001001414	Q6ZVX7	NCRP1_HUMAN	non-specific cytotoxic cell receptor protein 1	246	FBA.				protein catabolic process					ovary(1)	1						TTATCCACTTCCTGCACAAGG	0.627													115	271					0	0	1	0	0
IL28B	282617	broad.mit.edu	37	19	39735067	39735067	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39735067C>T	uc010xut.1	-	2	252	c.248G>A	c.(247-249)AGG>AAG	p.R83K	IL28B_uc010xuu.1_Missense_Mutation_p.R83K	NM_172139	NP_742151	Q8IZI9	IL28B_HUMAN	interleukin 28B	83					response to virus	extracellular space	cytokine activity				0	all_cancers(60;2.81e-07)|all_lung(34;7.81e-08)|Lung NSC(34;9.29e-08)|all_epithelial(25;3.9e-07)|Ovarian(47;0.0315)		Epithelial(26;1.55e-27)|all cancers(26;1.41e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CTGCAGCTGCCTCAGGTCCCA	0.577													4	25					0	0	1	0	0
IL28A	282616	broad.mit.edu	37	19	39759326	39759326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39759326G>A	uc002oku.1	+	2	72	c.20G>A	c.(19-21)GGG>GAG	p.G7E		NM_172138	NP_742150	Q8IZJ0	IL28A_HUMAN	interleukin 28A precursor	7					response to virus	extracellular space	cytokine activity			ovary(1)|skin(1)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;5.39e-26)|all cancers(26;4.1e-23)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GACATGACTGGGGACTGCACG	0.647													5	58					0	0	1	0	0
IL29	282618	broad.mit.edu	37	19	39787205	39787205	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39787205G>A	uc002okv.2	+	1	241	c.144G>A	c.(142-144)GCG>GCA	p.A48A		NM_172140	NP_742152	Q8IU54	IL29_HUMAN	interleukin 29 precursor	48					defense response to virus|negative regulation of cell proliferation|negative regulation of interleukin-13 production|negative regulation of interleukin-5 production|negative regulation of memory T cell differentiation|negative regulation of transcription, DNA-dependent|negative regulation of type 2 immune response|positive regulation of immune response|positive regulation of interferon-gamma production|positive regulation of MHC class I biosynthetic process|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of STAT protein	extracellular space|interleukin-28 receptor complex	cytokine activity|interleukin-28 receptor binding				0	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			AGGAGCTAGCGAGCTTCAAGA	0.582													11	27					0	0	1	0	0
LRFN1	57622	broad.mit.edu	37	19	39798511	39798511	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39798511C>T	uc002okw.2	-	2	2078	c.2078G>A	c.(2077-2079)GGA>GAA	p.G693E		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	693	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GGCCGCGGCTCCCCCAGGAAC	0.721													5	9					0	0	1	0	0
LRFN1	57622	broad.mit.edu	37	19	39798741	39798741	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39798741G>A	uc002okw.2	-	2	1848	c.1848C>T	c.(1846-1848)GCC>GCT	p.A616A		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	616	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CGACGGCGGGGGCAGCCTGGG	0.751													4	15					0	0	1	0	0
LRFN1	57622	broad.mit.edu	37	19	39799066	39799066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39799066C>T	uc002okw.2	-	2	1523	c.1523G>A	c.(1522-1524)CGA>CAA	p.R508Q		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	508	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GCCCACCACTCGCGTTGCCGG	0.677													7	19					0	0	1	0	0
LRFN1	57622	broad.mit.edu	37	19	39804951	39804951	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39804951C>T	uc002okw.2	-	1	1026	c.1026G>A	c.(1024-1026)GGG>GGA	p.G342G		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	342	Ig-like.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GGCTGGAGTTCCCCAGCAGCC	0.687													7	8					0	0	1	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39906027	39906027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39906027G>A	uc010xuz.1	+	4	752	c.427G>A	c.(427-429)GAG>AAG	p.E143K	PLEKHG2_uc010xuy.1_Missense_Mutation_p.E84K|PLEKHG2_uc002olj.2_Missense_Mutation_p.E143K|PLEKHG2_uc010xva.1_5'UTR	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	143	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GCTGAGCGTGGAGCAGGTGGG	0.647													22	42					0	0	1	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39913526	39913526	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39913526C>T	uc010xuz.1	+	18	2157	c.1832C>T	c.(1831-1833)CCA>CTA	p.P611L	PLEKHG2_uc010xuy.1_Missense_Mutation_p.P552L|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.P389L	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	611					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GGGCCTTCCCCACTCCACGTC	0.562													15	47					0	0	1	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39915363	39915363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39915363C>T	uc010xuz.1	+	19	3915	c.3590C>T	c.(3589-3591)TCG>TTG	p.S1197L	PLEKHG2_uc010xuy.1_Missense_Mutation_p.S1138L|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.S975L	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	1197					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CTCACACCTTCGTTGGAGCAG	0.572													82	195					0	0	1	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39915756	39915756	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39915756C>T	uc010xuz.1	+	19	4308	c.3983C>T	c.(3982-3984)CCC>CTC	p.P1328L	PLEKHG2_uc010xuy.1_Intron|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.P1106L	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	1328	Poly-Pro.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CCACCACCTCCCCCAGCCAGG	0.741													4	14					0	0	1	0	0
SUPT5H	6829	broad.mit.edu	37	19	39959963	39959963	+	Silent	SNP	C	T	T	rs147765614		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39959963C>T	uc002olo.3	+	16	1478	c.1299C>T	c.(1297-1299)CTC>CTT	p.L433L	SUPT5H_uc002olp.3_Silent_p.L433L|SUPT5H_uc002olq.3_Silent_p.L429L|SUPT5H_uc002oln.3_Silent_p.L433L|SUPT5H_uc002olr.3_Silent_p.L433L|SUPT5H_uc002ols.1_Silent_p.L56L|SUPT5H_uc010egp.1_5'Flank	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	433	KOW 2.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			AGGGTGAGCTCATCAACCTGC	0.612													9	23					0	0	1	0	0
SUPT5H	6829	broad.mit.edu	37	19	39960881	39960881	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39960881C>T	uc002olo.3	+	17	1676	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F	SUPT5H_uc002olp.3_Silent_p.F499F|SUPT5H_uc002olq.3_Silent_p.F495F|SUPT5H_uc002oln.3_Silent_p.F499F|SUPT5H_uc002olr.3_Silent_p.F499F|SUPT5H_uc002ols.1_Silent_p.F122F|SUPT5H_uc010egp.1_5'Flank	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	499	KOW 3.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			AGGAGAATTTCGTTATCCTGT	0.552													52	122					0	0	1	0	0
SUPT5H	6829	broad.mit.edu	37	19	39963869	39963869	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39963869C>T	uc002olo.3	+	24	2464	c.2285C>T	c.(2284-2286)ACC>ATC	p.T762I	SUPT5H_uc002olp.3_Missense_Mutation_p.T762I|SUPT5H_uc002olq.3_Missense_Mutation_p.T758I|SUPT5H_uc002oln.3_Missense_Mutation_p.T762I|SUPT5H_uc002olr.3_Missense_Mutation_p.T762I|SUPT5H_uc002ols.1_Missense_Mutation_p.T385I|SUPT5H_uc010egp.1_Silent_p.D127D	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	762	CTR1-2.|9 X 7 AA approximate tandem repeats of G- S-[QR]-T-P-X-[YQ], motif CTR1.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GGCGGCATGACCTCGACCTAT	0.652													20	62					0	0	1	0	0
SUPT5H	6829	broad.mit.edu	37	19	39965022	39965022	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39965022C>T	uc002olo.3	+	27	2979	c.2800C>T	c.(2800-2802)CCG>TCG	p.P934S	SUPT5H_uc002olp.3_Missense_Mutation_p.P934S|SUPT5H_uc002olq.3_Missense_Mutation_p.P930S|SUPT5H_uc002oln.3_Missense_Mutation_p.P934S|SUPT5H_uc002olr.3_Missense_Mutation_p.P934S|SUPT5H_uc002ols.1_Missense_Mutation_p.P557S	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	934	CTR2-9.|Pro-rich.|10 X 8 AA approximate tandem repeats of P-[TS]-P-S-P-[QA]-[SG]-Y, motif CTR2.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CCACCCTACACCGTCGCCCAT	0.632											OREG0025462	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	38					0	0	1	0	0
DLL3	10683	broad.mit.edu	37	19	39994806	39994806	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39994806G>A	uc002olx.2	+	5	806	c.748G>A	c.(748-750)GTC>ATC	p.V250I	DLL3_uc010egq.2_Missense_Mutation_p.V250I|DLL3_uc002olw.2_Missense_Mutation_p.V250I	NM_016941	NP_058637	Q9NYJ7	DLL3_HUMAN	delta-like 3 protein isoform 1 precursor	250	Extracellular (Potential).				Notch signaling pathway|skeletal system development	integral to membrane	Notch binding			central_nervous_system(2)|breast(1)	3	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CCTCTGCACGGTCCCTGTCTC	0.667													22	44					0	0	1	0	0
DLL3	10683	broad.mit.edu	37	19	39994874	39994874	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39994874C>T	uc002olx.2	+	5	874	c.816C>T	c.(814-816)GTC>GTT	p.V272V	DLL3_uc010egq.2_Silent_p.V272V|DLL3_uc002olw.2_Silent_p.V272V	NM_016941	NP_058637	Q9NYJ7	DLL3_HUMAN	delta-like 3 protein isoform 1 precursor	272	Extracellular (Potential).				Notch signaling pathway|skeletal system development	integral to membrane	Notch binding			central_nervous_system(2)|breast(1)	3	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GATGCCTTGTCCCTGGGCCTG	0.642													22	50					0	0	1	0	0
DLL3	10683	broad.mit.edu	37	19	39998532	39998532	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:39998532C>T	uc002olx.2	+	8	1794	c.1736C>T	c.(1735-1737)GCT>GTT	p.A579V	DLL3_uc002olw.2_Missense_Mutation_p.A579V	NM_016941	NP_058637	Q9NYJ7	DLL3_HUMAN	delta-like 3 protein isoform 1 precursor	579	Cytoplasmic (Potential).				Notch signaling pathway|skeletal system development	integral to membrane	Notch binding			central_nervous_system(2)|breast(1)	3	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GTCATATCTGCTCCTTCCATC	0.547													17	58					0	0	1	0	0
EID2B	126272	broad.mit.edu	37	19	40023290	40023290	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40023290G>A	uc002olz.1	-	1	205	c.153C>T	c.(151-153)GCC>GCT	p.A51A		NM_152361	NP_689574	Q96D98	EID2B_HUMAN	EP300 interacting inhibitor of differentiation	51					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;8.61e-26)|all cancers(26;2.76e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GCGCAGCTTCGGCCACTGGGC	0.756													6	13					0	0	1	0	0
LGALS13	29124	broad.mit.edu	37	19	40097942	40097942	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40097942G>A	uc002omb.2	+	4	423	c.383G>A	c.(382-384)AGA>AAA	p.R128K		NM_013268	NP_037400	Q9UHV8	PP13_HUMAN	galectin-13	128	Galectin.				lipid catabolic process|phospholipid metabolic process		carboxylesterase activity|lysophospholipase activity|sugar binding			ovary(1)	1	all_cancers(60;1.77e-05)|all_lung(34;5.38e-08)|Lung NSC(34;6.37e-08)|Ovarian(47;0.116)		Epithelial(26;3.28e-26)|OV - Ovarian serous cystadenocarcinoma(5;7.31e-25)|all cancers(26;1.15e-23)|LUSC - Lung squamous cell carcinoma(53;0.00281)			CAAGTGTCGAGAGATATCTCC	0.463													10	97					0	0	1	0	0
LOC400696	400696	broad.mit.edu	37	19	40172135	40172135	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40172135G>A	uc010xve.1	+	2	124	c.78G>A	c.(76-78)CCG>CCA	p.P26P	LOC400696_uc010xvf.1_RNA	NM_207646	NP_997529			hypothetical protein LOC400696												0						CAGGGACACCGATCATCCCTT	0.532													35	35					0	0	1	0	0
CLC	1178	broad.mit.edu	37	19	40225045	40225045	+	Missense_Mutation	SNP	G	A	A	rs149971661	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40225045G>A	uc002omh.2	-	3	257	c.181C>T	c.(181-183)CGT>TGT	p.R61C		NM_001828	NP_001819	Q05315	LPPL_HUMAN	Charcot-Leyden crystal protein	61	Galectin.				lipid catabolic process|multicellular organismal development		carboxylesterase activity|lysophospholipase activity|sugar binding				0	all_cancers(60;2.99e-06)|all_lung(34;4.7e-08)|Lung NSC(34;5.46e-08)|Ovarian(47;0.06)	Renal(1328;0.000147)|Hepatocellular(1079;0.0202)|Myeloproliferative disorder(2;0.0255)	Epithelial(26;6.43e-25)|OV - Ovarian serous cystadenocarcinoma(5;1.07e-24)|all cancers(26;8.38e-23)	GBM - Glioblastoma multiforme(1328;4.97e-06)|STAD - Stomach adenocarcinoma(1328;0.00655)		ATGACCACACGACGACCAAAG	0.493													55	137					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40357655	40357655	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40357655C>T	uc002omp.3	-	34	15666	c.15658G>A	c.(15658-15660)GAG>AAG	p.E5220K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5220						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCCTTGACCTCACATACACGG	0.637													23	53					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40357727	40357727	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40357727C>T	uc002omp.3	-	34	15594	c.15586G>A	c.(15586-15588)GAG>AAG	p.E5196K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5196	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GAACAGCGCTCGCTGCAGTCT	0.483													16	38					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40357749	40357749	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40357749G>A	uc002omp.3	-	34	15572	c.15564C>T	c.(15562-15564)TCC>TCT	p.S5188S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5188	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGGTCAGCAGGGAGGAGTTTA	0.413													16	28					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40362803	40362803	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40362803G>A	uc002omp.3	-	32	15275	c.15267C>T	c.(15265-15267)TTC>TTT	p.F5089F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5089						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGCGGCACAGGAAGGCTTTGT	0.657													52	132					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40362893	40362893	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40362893G>A	uc002omp.3	-	32	15185	c.15177C>T	c.(15175-15177)CCC>CCT	p.P5059P		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5059	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGGTCGCGAAGGGGCCCTGGG	0.652													49	118					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40363885	40363885	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40363885C>T	uc002omp.3	-	31	14765	c.14757G>A	c.(14755-14757)GTG>GTA	p.V4919V		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4919	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GAGCTAGGCTCACAACCTGGC	0.607													17	49					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40364092	40364092	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40364092G>A	uc002omp.3	-	31	14558	c.14550C>T	c.(14548-14550)GCC>GCT	p.A4850A		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4850						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CACAGCCTGTGGCATGACAGG	0.647													12	51					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40367848	40367848	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40367848G>A	uc002omp.3	-	29	13120	c.13112C>T	c.(13111-13113)TCC>TTC	p.S4371F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4371	TIL 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGGTGCAGGGGACGGACAGCT	0.622													28	46					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40368832	40368833	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40368832_40368833CC>TT	uc002omp.3	-	28	12523_12524	c.12515_12516GG>AA	c.(12514-12516)GGG>GAA	p.G4172E		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4172	VWFD 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CTGAAATCCGCCCGTCGGCCAC	0.619													38	225					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40392512	40392512	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40392512G>A	uc002omp.3	-	16	8000	c.7992C>T	c.(7990-7992)CTC>CTT	p.L2664L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2664	VWFD 6.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCTGGAGAGGAGCCCACAGA	0.627													10	89					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40411717	40411717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40411717C>T	uc002omp.3	-	7	3919	c.3911G>A	c.(3910-3912)CGA>CAA	p.R1304Q		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1304	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CACACTGACTCGCCCATTACC	0.627													55	114					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40411940	40411940	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40411940C>T	uc002omp.3	-	7	3696	c.3688G>A	c.(3688-3690)GGA>AGA	p.G1230R		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1230	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TCGTGCGGTCCGCAGCTGGAG	0.667													20	51					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40412180	40412180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40412180G>A	uc002omp.3	-	7	3456	c.3448C>T	c.(3448-3450)CCG>TCG	p.P1150S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1150	Cys-rich.|TIL 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CAGGACAGCGGGCAGCCGTAG	0.622													15	56					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40412184	40412184	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40412184G>A	uc002omp.3	-	7	3452	c.3444C>T	c.(3442-3444)GGC>GGT	p.G1148G		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1148	Cys-rich.|TIL 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ACAGCGGGCAGCCGTAGGAAC	0.612													16	55					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40433119	40433119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40433119C>T	uc002omp.3	-	2	1158	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	384	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCACAGCCTCCCAGGTGAGC	0.617													25	47					0	0	1	0	0
ZNF546	339327	broad.mit.edu	37	19	40520580	40520580	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40520580C>T	uc002oms.2	+	7	1659	c.1403C>T	c.(1402-1404)CCC>CTC	p.P468L	ZNF546_uc002omt.2_Missense_Mutation_p.P442L	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	468					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GGTGAGAAACCCTATGAATGT	0.408													27	85					0	0	1	0	0
ZNF780B	163131	broad.mit.edu	37	19	40540618	40540618	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40540618G>A	uc002omu.2	-	5	2213	c.2148C>T	c.(2146-2148)TAC>TAT	p.Y716Y	ZNF780B_uc002omv.2_Silent_p.Y568Y	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	716	C2H2-type 20.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TATGAATTCGGTAATGTTCAG	0.408													27	74					0	0	1	0	0
ZNF780B	163131	broad.mit.edu	37	19	40541145	40541145	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40541145G>A	uc002omu.2	-	5	1686	c.1621C>T	c.(1621-1623)CAC>TAC	p.H541Y	ZNF780B_uc002omv.2_Missense_Mutation_p.H393Y	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	541	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					AGTTGTAGGTGAAGTCTAAAA	0.418													13	106					0	0	1	0	0
ZNF780B	163131	broad.mit.edu	37	19	40541302	40541302	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40541302A>G	uc002omu.2	-	5	1529	c.1464T>C	c.(1462-1464)CTT>CTC	p.L488L	ZNF780B_uc002omv.2_Silent_p.L340L	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	488	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TATGTCGAGCAAGCTGTGTCA	0.403													32	103					0	0	1	0	0
ZNF780B	163131	broad.mit.edu	37	19	40541451	40541451	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40541451G>A	uc002omu.2	-	5	1380	c.1315C>T	c.(1315-1317)CAT>TAT	p.H439Y	ZNF780B_uc002omv.2_Missense_Mutation_p.H291Y	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	439	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TCATTGGAATGAATTTTTTGA	0.378													42	210					0	0	1	0	0
MAP3K10	4294	broad.mit.edu	37	19	40698283	40698283	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40698283C>T	uc002ona.2	+	1	633	c.345C>T	c.(343-345)GCC>GCT	p.A115A		NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	115	Protein kinase.				activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						TCTATCGGGCCCTGTGGCGTG	0.682													4	21					0	0	1	0	0
MAP3K10	4294	broad.mit.edu	37	19	40719431	40719431	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40719431C>T	uc002ona.2	+	9	2133	c.1845C>T	c.(1843-1845)TTC>TTT	p.F615F	MAP3K10_uc002onb.2_Silent_p.F4F	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	615					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						CAGAGGAGTTCGCGGAGGCAG	0.647													8	37					0	0	1	0	0
MAP3K10	4294	broad.mit.edu	37	19	40719516	40719516	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40719516C>T	uc002ona.2	+	9	2218	c.1930C>T	c.(1930-1932)CCC>TCC	p.P644S	MAP3K10_uc002onb.2_Missense_Mutation_p.P33S	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	644					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						GCCTGCCGAGCCCTccccggg	0.537													6	26					0	0	1	0	0
MAP3K10	4294	broad.mit.edu	37	19	40720956	40720956	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40720956C>T	uc002ona.2	+	10	2910	c.2622C>T	c.(2620-2622)TTC>TTT	p.F874F	MAP3K10_uc002onb.2_Silent_p.F263F	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	874					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						CCCCTGAGTTCCCAGGCCGCC	0.711													9	30					0	0	1	0	0
PRX	57716	broad.mit.edu	37	19	40900930	40900930	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40900930C>T	uc002onr.2	-	7	3598	c.3329G>A	c.(3328-3330)GGG>GAG	p.G1110E	PRX_uc002onq.2_Missense_Mutation_p.G971E|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1110	Glu-rich (acidic).				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTCTGCCCTCCCTTCCTCCTG	0.667													22	62					0	0	1	0	0
PRX	57716	broad.mit.edu	37	19	40902441	40902441	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40902441C>T	uc002onr.2	-	7	2087	c.1818G>A	c.(1816-1818)CCG>CCA	p.P606P	PRX_uc002onq.2_Silent_p.P467P|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	606	55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CGGGCACCTTCGGGAGTTGCA	0.537													84	209					0	0	1	0	0
BLVRB	645	broad.mit.edu	37	19	40953902	40953902	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:40953902G>A	uc002onw.2	-	5	645	c.515C>T	c.(514-516)CCC>CTC	p.P172L	BLVRB_uc010egw.1_RNA	NM_000713	NP_000704	P30043	BLVRB_HUMAN	biliverdin reductase B (flavin reductase	172					heme catabolic process	cytosol	biliverdin reductase activity|binding|flavin reductase activity				0			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)		NADH(DB00157)|Riboflavin(DB00140)	GACCCTTGAGGGCCCTCGTCC	0.562													15	50					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41000874	41000874	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41000874C>T	uc002ony.2	+	6	744	c.658C>T	c.(658-660)CAC>TAC	p.H220Y	SPTBN4_uc002onx.2_Missense_Mutation_p.H220Y|SPTBN4_uc002onz.2_Missense_Mutation_p.H220Y	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	220	Actin-binding.|CH 2.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGCCCTCATTCACCGGCACAG	0.493													21	42					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41008108	41008108	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41008108G>A	uc002ony.2	+	9	1057	c.971G>A	c.(970-972)TGG>TAG	p.W324*	SPTBN4_uc002onx.2_Nonsense_Mutation_p.W324*|SPTBN4_uc002onz.2_Nonsense_Mutation_p.W324*	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	324	Spectrin 1.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGCTGGCCTGGATCCACCGC	0.582													30	76					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41008206	41008206	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41008206C>T	uc002ony.2	+	9	1155	c.1069C>T	c.(1069-1071)CTG>TTG	p.L357L	SPTBN4_uc002onx.2_Silent_p.L357L|SPTBN4_uc002onz.2_Silent_p.L357L	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	357					actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTATTGCACGCTGGAGAAGCC	0.607													24	49					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41010033	41010033	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41010033G>A	uc002ony.2	+	12	1745	c.1659G>A	c.(1657-1659)GAG>GAA	p.E553E	SPTBN4_uc002onx.2_Silent_p.E553E|SPTBN4_uc002onz.2_Silent_p.E553E	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	553	Spectrin 4.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GGATGGAGGAGATGCAGGTGC	0.622													7	39					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41012157	41012157	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41012157C>T	uc002ony.2	+	13	1766	c.1680C>T	c.(1678-1680)TCC>TCT	p.S560S	SPTBN4_uc002onx.2_Silent_p.S560S|SPTBN4_uc002onz.2_Silent_p.S560S	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	560	Spectrin 4.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AGCTGCTGTCCCGGGAGTGTG	0.652													30	74					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41021242	41021242	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41021242G>A	uc002ony.2	+	15	2876	c.2790G>A	c.(2788-2790)ATG>ATA	p.M930I	SPTBN4_uc002onx.2_Missense_Mutation_p.M930I|SPTBN4_uc002onz.2_Missense_Mutation_p.M930I|SPTBN4_uc010egx.2_5'UTR	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	930	Spectrin 7.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ACCAAGAGATGAACAGCCTGA	0.562													7	15					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41040073	41040073	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41040073G>A	uc002ony.2	+	20	4268	c.4182G>A	c.(4180-4182)GAG>GAA	p.E1394E	SPTBN4_uc002onx.2_Silent_p.E1394E|SPTBN4_uc002onz.2_Silent_p.E1394E|SPTBN4_uc010egx.2_Silent_p.E137E|SPTBN4_uc010egy.1_Silent_p.E70E|SPTBN4_uc002ooa.2_Silent_p.E70E|SPTBN4_uc010egz.1_Silent_p.E70E	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1394	Spectrin 11.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GCTGGGCGGAGCTGGAGAGCA	0.642													11	18					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41062004	41062005	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41062004_41062005GG>AA	uc002ony.2	+	25	5185_5186	c.5099_5100GG>AA	c.(5098-5100)CGG>CAA	p.R1700Q	SPTBN4_uc002onx.2_Missense_Mutation_p.R1700Q|SPTBN4_uc002onz.2_Missense_Mutation_p.R1700Q|SPTBN4_uc010egx.2_Missense_Mutation_p.R443Q|SPTBN4_uc002ooa.2_Missense_Mutation_p.R376Q	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1700	Spectrin 14.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CAGATCAGCCGGCGGCAGTCTC	0.663													4	23					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41066305	41066305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41066305C>T	uc002ony.2	+	27	5997	c.5911C>T	c.(5911-5913)CCC>TCC	p.P1971S	SPTBN4_uc002onx.2_Missense_Mutation_p.P1971S|SPTBN4_uc002onz.2_Missense_Mutation_p.P1971S|SPTBN4_uc010egx.2_Missense_Mutation_p.P714S|SPTBN4_uc002ooa.2_Missense_Mutation_p.P647S	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1971	Spectrin 17.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AGCCGACAAGCCCAGGTGCCC	0.652													36	45					0	0	1	0	0
SHKBP1	92799	broad.mit.edu	37	19	41083492	41083492	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41083492C>T	uc002oob.2	+	4	265	c.216C>T	c.(214-216)TTC>TTT	p.F72F	SHKBP1_uc002ooc.2_Silent_p.F72F|SHKBP1_uc002ood.2_Silent_p.F72F|SHKBP1_uc010xvl.1_Missense_Mutation_p.S15L|SHKBP1_uc002ooe.2_5'UTR|SHKBP1_uc002oof.2_5'UTR|SHKBP1_uc010xvm.1_5'Flank|SHKBP1_uc010xvn.1_5'Flank	NM_138392	NP_612401	Q8TBC3	SHKB1_HUMAN	SH3KBP1 binding protein 1	72	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|pancreas(1)	2			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTACAGTCTTCGCCCCCATCC	0.577													92	195					0	0	1	0	0
SHKBP1	92799	broad.mit.edu	37	19	41086272	41086272	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41086272C>T	uc002oob.2	+	7	492	c.443C>T	c.(442-444)CCT>CTT	p.P148L	SHKBP1_uc002ooc.2_Missense_Mutation_p.P148L|SHKBP1_uc002ood.2_Missense_Mutation_p.P148L|SHKBP1_uc010xvl.1_Missense_Mutation_p.P71L|SHKBP1_uc002ooe.2_5'UTR|SHKBP1_uc002oof.2_5'UTR|SHKBP1_uc010xvm.1_5'UTR|SHKBP1_uc010xvn.1_Missense_Mutation_p.P26L	NM_138392	NP_612401	Q8TBC3	SHKB1_HUMAN	SH3KBP1 binding protein 1	148						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|pancreas(1)	2			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTAGTGGGGCCTCAGCAGCTA	0.582													13	41					0	0	1	0	0
LTBP4	8425	broad.mit.edu	37	19	41099087	41099087	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41099087G>A	uc002oog.1	+	1	16	c.16G>A	c.(16-18)GCG>ACG	p.A6T		NM_003573	NP_003564	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	Error:Variant_position_missing_in_Q8N2S1_after_alignment					growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AGACGTAAAAGGTGAGTGCCT	0.358													18	49					0	0	1	0	0
LTBP4	8425	broad.mit.edu	37	19	41135376	41135376	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41135376C>T	uc002ooh.1	+	34	4796	c.4796C>T	c.(4795-4797)TCC>TTC	p.S1599F	LTBP4_uc002oog.1_Missense_Mutation_p.S1562F|LTBP4_uc002ooi.1_Missense_Mutation_p.S1532F|LTBP4_uc002ooj.1_Missense_Mutation_p.S472F|LTBP4_uc002ool.1_Missense_Mutation_p.S611F|LTBP4_uc010xvp.1_Missense_Mutation_p.S359F	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1599	EGF-like 16.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ACGGATGGCTCCTTCCGCTGC	0.701													23	45					0	0	1	0	0
NUMBL	9253	broad.mit.edu	37	19	41186939	41186939	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41186939G>A	uc002oon.2	-	6	591	c.423C>T	c.(421-423)ATC>ATT	p.I141I	NUMBL_uc010xvq.1_Silent_p.I100I|NUMBL_uc002ooo.2_Silent_p.I141I|NUMBL_uc010xvr.1_Silent_p.I100I	NM_004756	NP_004747	Q9Y6R0	NUMBL_HUMAN	numb homolog (Drosophila)-like	141	PID.				cytokine-mediated signaling pathway|lateral ventricle development|neuroblast division in subventricular zone|protein metabolic process	cytoplasm	protein binding			lung(3)|ovary(1)|breast(1)	5			Lung(22;0.000393)|LUSC - Lung squamous cell carcinoma(20;0.00105)			AGACCTTTTCGATGGTCTGGT	0.468													60	121					0	0	1	0	0
NUMBL	9253	broad.mit.edu	37	19	41188694	41188694	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41188694G>A	uc002oon.2	-	5	506	c.338C>T	c.(337-339)TCC>TTC	p.S113F	NUMBL_uc010xvq.1_Missense_Mutation_p.S72F|NUMBL_uc002ooo.2_Missense_Mutation_p.S113F|NUMBL_uc010xvr.1_Missense_Mutation_p.S72F	NM_004756	NP_004747	Q9Y6R0	NUMBL_HUMAN	numb homolog (Drosophila)-like	113	PID.				cytokine-mediated signaling pathway|lateral ventricle development|neuroblast division in subventricular zone|protein metabolic process	cytoplasm	protein binding			lung(3)|ovary(1)|breast(1)	5			Lung(22;0.000393)|LUSC - Lung squamous cell carcinoma(20;0.00105)			AGACTTCACGGACTTTCGGCC	0.652													19	60					0	0	1	0	0
ADCK4	79934	broad.mit.edu	37	19	41209632	41209632	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41209632G>A	uc002oor.2	-	8	1007	c.705C>T	c.(703-705)GCC>GCT	p.A235A	ADCK4_uc002oop.1_5'Flank|ADCK4_uc002ooq.1_Silent_p.A194A	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	235	Protein kinase.					integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			GGATCTTCACGGCCACCTCCG	0.522													15	69					0	0	1	0	0
ADCK4	79934	broad.mit.edu	37	19	41211272	41211272	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41211272G>A	uc002oor.2	-	6	750	c.448C>T	c.(448-450)CGA>TGA	p.R150*	ADCK4_uc002ooq.1_Intron|ADCK4_uc002oos.2_Nonsense_Mutation_p.R150*	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	150						integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			GCGGCCCCTCGAACTGTACAT	0.607													27	52					0	0	1	0	0
RAB4B	53916	broad.mit.edu	37	19	41292841	41292841	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41292841C>T	uc002opd.1	+	7	725	c.615C>T	c.(613-615)GCC>GCT	p.A205A	RAB4B_uc002opc.1_RNA|RAB4B_uc002ope.1_RNA|EGLN2_uc010ehd.2_5'UTR|RAB4B_uc002opf.1_Silent_p.A231A	NM_016154	NP_057238	P61018	RAB4B_HUMAN	ras-related GTP-binding protein 4b	205					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	intracellular|plasma membrane	GTP binding|GTPase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			GTGCCCAGGCCGTGGCCCCTC	0.682													5	52					0	0	1	0	0
CYP2A6	1548	broad.mit.edu	37	19	41354158	41354158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41354158C>T	uc002opl.3	-	4	641	c.620G>A	c.(619-621)GGA>GAA	p.G207E	CYP2A6_uc010ehe.1_Missense_Mutation_p.G3E|CYP2A6_uc010ehf.1_RNA	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	207					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	CTGGAAGATTCCTAGCATCAT	0.567													40	110					0	0	1	0	0
CYP2A7	1549	broad.mit.edu	37	19	41386449	41386449	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41386449C>T	uc002opm.2	-	3	970	c.428G>A	c.(427-429)CGA>CAA	p.R143Q	CYP2A7_uc002opo.2_Missense_Mutation_p.R143Q|CYP2A7_uc002opn.2_Missense_Mutation_p.R92Q	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	143						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			CTCGATGCCTCGCTTGCCCAC	0.672													11	32					0	0	1	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41430259	41430259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41430259G>A	uc010ehg.1	+	1	90	c.82G>A	c.(82-84)GGC>AGC	p.G28S	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Missense_Mutation_p.G28S|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						TAACTCCCATGGCACCCTCCC	0.587													27	72					0	0	1	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41442369	41442369	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41442369G>A	uc010ehg.1	+	3	415	c.407G>A	c.(406-408)GGG>GAG	p.G136E	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Missense_Mutation_p.G136E|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						AGGGACTTCGGGATGGGAAAG	0.562													13	27					0	0	1	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41444953	41444953	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41444953C>T	uc010ehg.1	+	4	572	c.564C>T	c.(562-564)TTC>TTT	p.F188F	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Silent_p.F188F|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						GAAAACGCTTCCACTACCAAG	0.507													15	31					0	0	1	0	0
CYP2B6	1555	broad.mit.edu	37	19	41497234	41497234	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41497234C>T	uc002opr.1	+	1	31	c.24C>T	c.(22-24)TTC>TTT	p.F8F	CYP2A7_uc002opo.2_Intron	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	8					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	TCCTCCTCTTCCTTGCACTCC	0.622													71	184					0	0	1	0	0
CYP2B6	1555	broad.mit.edu	37	19	41510233	41510233	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41510233G>A	uc002opr.1	+	3	373	c.366G>A	c.(364-366)AAG>AAA	p.K122K	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Silent_p.K82K	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	122					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	ACCGCTGGAAGGTGCTTCGGC	0.552													10	37					0	0	1	0	0
CYP2B6	1555	broad.mit.edu	37	19	41515243	41515243	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41515243C>T	uc002opr.1	+	5	772	c.765C>T	c.(763-765)ACC>ACT	p.T255T	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Intron	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	255					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	ACCGTGAAACCCTGGACCCCA	0.468													42	93					0	0	1	0	0
CYP2A13	1553	broad.mit.edu	37	19	41594836	41594836	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41594836C>T	uc002opt.2	+	2	192	c.183C>T	c.(181-183)ATC>ATT	p.I61I		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	61					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	TCCAACAGATCAGTGAGCGCT	0.612													20	63					0	0	1	0	0
CYP2A13	1553	broad.mit.edu	37	19	41594887	41594887	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41594887C>T	uc002opt.2	+	2	243	c.234C>T	c.(232-234)GTC>GTT	p.V78V		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	78					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	CCCGGCGGGTCGTGGTGCTGT	0.637													26	82					0	0	1	0	0
CYP2F1	1572	broad.mit.edu	37	19	41628036	41628036	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41628036G>A	uc002opu.1	+	6	876	c.820G>A	c.(820-822)GAG>AAG	p.E274K	CYP2F1_uc010xvw.1_Missense_Mutation_p.E60K|CYP2F1_uc010xvv.1_Missense_Mutation_p.E274K|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	274					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						CAAGATGGCAGAGGTAATCCC	0.602													12	27					0	0	1	0	0
CYP2F1	1572	broad.mit.edu	37	19	41628764	41628764	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41628764C>T	uc002opu.1	+	7	916	c.860C>T	c.(859-861)ACC>ATC	p.T287I	CYP2F1_uc010xvw.1_Missense_Mutation_p.T73I|CYP2F1_uc010xvv.1_Missense_Mutation_p.T287I|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	287					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						CACATGGATACCCTGCTGATG	0.562													15	45					0	0	1	0	0
CYP2S1	29785	broad.mit.edu	37	19	41704373	41704373	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41704373C>T	uc002opw.2	+	4	555	c.500C>T	c.(499-501)CCA>CTA	p.P167L	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Intron	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	167					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						CCAGGACGCCCATTCGATCCC	0.632													59	135					0	0	1	0	0
CYP2S1	29785	broad.mit.edu	37	19	41704713	41704713	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41704713G>A	uc002opw.2	+	5	809	c.754G>A	c.(754-756)GTG>ATG	p.V252M	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Intron	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	252					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						AGTCCGGCAGGTGCAGCAGCA	0.642													29	64					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41743987	41743987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41743987C>T	uc010ehj.2	+	7	1112	c.922C>T	c.(922-924)CGC>TGC	p.R308C	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.R308C|AXL_uc010ehk.2_Missense_Mutation_p.R308C	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	308	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						TTATCACATCCGCGTGGCATG	0.647													51	151					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41748899	41748899	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41748899G>A	uc010ehj.2	+	11	1614	c.1424G>A	c.(1423-1425)CGA>CAA	p.R475Q	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.R475Q|AXL_uc010ehk.2_Missense_Mutation_p.R466Q	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	475	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GTCCACCGGCGAAAGAAGGAG	0.607													19	53					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41754721	41754721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41754721G>A	uc010ehj.2	+	14	1897	c.1707G>A	c.(1705-1707)ATG>ATA	p.M569I	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Missense_Mutation_p.M560I	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	569	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						TGAAGACGATGAAGAGTGAGT	0.547													15	39					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41758327	41758327	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41758327C>T	uc010ehj.2	+	15	1973	c.1783C>T	c.(1783-1785)CCC>TCC	p.P595S	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Missense_Mutation_p.P586S	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	595	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						ATTTGACCATCCCAACGTCAT	0.567													20	58					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41758775	41758775	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41758775G>A	uc010ehj.2	+	16	2019	c.1829G>A	c.(1828-1830)CGA>CAA	p.R610Q	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Missense_Mutation_p.R601Q	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	610	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GGTTCTGAACGAGAGAGCTTC	0.597													21	92					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41758873	41758873	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41758873G>A	uc010ehj.2	+	16	2116	c.1926_splice	c.e16+1	p.V642_splice	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Splice_Site_p.V633_splice	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1							integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						CCAGCCAGTGGTAAGGGGCGT	0.308													16	65					0	0	1	0	0
HNRNPUL1	11100	broad.mit.edu	37	19	41798316	41798316	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:41798316C>A	uc002oqb.3	+	8	1455	c.1166C>A	c.(1165-1167)CCC>CAC	p.P389H	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_Missense_Mutation_p.P289H|HNRNPUL1_uc002oqa.3_Missense_Mutation_p.P289H|HNRNPUL1_uc010ehm.2_Missense_Mutation_p.P389H|HNRNPUL1_uc002oqc.3_Missense_Mutation_p.P275H|HNRNPUL1_uc002oqe.3_Intron|HNRNPUL1_uc002oqd.3_Missense_Mutation_p.P289H|HNRNPUL1_uc010ehn.2_Missense_Mutation_p.P289H|HNRNPUL1_uc010eho.2_Missense_Mutation_p.P289H|HNRNPUL1_uc010xvy.1_Missense_Mutation_p.P289H|HNRNPUL1_uc010ehp.2_Missense_Mutation_p.P245H|HNRNPUL1_uc010ehl.1_Missense_Mutation_p.P289H	NM_007040	NP_008971	Q9BUJ2	HNRL1_HUMAN	heterogeneous nuclear ribonucleoprotein U-like 1	389	Necessary for interaction with TP53.				nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	enzyme binding|RNA binding			central_nervous_system(1)|skin(1)	2						AGAGCAGAGCCCTACTGTTCT	0.557													34	84					6.50621e-10	6.5279e-10	1	1	0
CEACAM21	90273	broad.mit.edu	37	19	42082636	42082636	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42082636C>T	uc002ore.3	+	1	106	c.10C>T	c.(10-12)CCC>TCC	p.P4S	CEACAM21_uc002orc.1_Intron|CEACAM21_uc002ord.1_Intron|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Missense_Mutation_p.P4S	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	4						integral to membrane				ovary(1)	1						CATGGGGCCCCCCTCAGCTTG	0.622													10	43					0	0	1	0	0
CEACAM21	90273	broad.mit.edu	37	19	42085862	42085862	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42085862G>A	uc002ore.3	+	3	677	c.581G>A	c.(580-582)TGG>TAG	p.W194*	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_RNA|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Nonsense_Mutation_p.W194*	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	194	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						AAGCTGTCCTGGTTTAACCAT	0.542													7	25					0	0	1	0	0
CEACAM21	90273	broad.mit.edu	37	19	42090779	42090779	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42090779C>T	uc002ore.3	+	4	876	c.780C>T	c.(778-780)CTC>CTT	p.L260L	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_RNA|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Silent_p.L259L	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	260	Helical; (Potential).					integral to membrane				ovary(1)	1						GTTTCCTGCTCCTCCGAAAAA	0.537													6	12					0	0	1	0	0
CEACAM4	1089	broad.mit.edu	37	19	42125730	42125730	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42125730G>A	uc002orh.1	-	7	819	c.708C>T	c.(706-708)ATC>ATT	p.I236I		NM_001817	NP_001808	O75871	CEAM4_HUMAN	carcinoembryonic antigen-related cell adhesion	236	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction					0						CTTTGTGGTCGATCTGGCAGT	0.527													48	108					0	0	1	0	0
CEACAM7	1087	broad.mit.edu	37	19	42187864	42187864	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42187864G>A	uc002ori.1	-	3	560	c.558C>T	c.(556-558)CTC>CTT	p.L186L	CEACAM7_uc010ehx.2_Silent_p.L186L|CEACAM7_uc010ehy.1_Intron	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	186	Ig-like C2-type.					anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		GACTGACCAGGAGGCTCTGAT	0.478													47	113					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42221651	42221651	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42221651C>T	uc002ork.2	+	5	1357	c.1236C>T	c.(1234-1236)CTC>CTT	p.L412L	CEACAM5_uc002orj.1_Silent_p.L411L|CEACAM5_uc002orl.2_Silent_p.L412L	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	412	Ig-like 4.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TGAATGTCCTCTGTGAGTATC	0.512													66	154					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42231185	42231185	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42231185G>A	uc002ork.2	+	9	2179	c.2058G>A	c.(2056-2058)GGG>GGA	p.G686G	CEACAM5_uc002orj.1_Silent_p.G685G|CEACAM5_uc002orl.2_Silent_p.G686G	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	686						anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TCTCAGCTGGGGCCACTGTCG	0.483													150	386					0	0	1	0	0
CEACAM3	1084	broad.mit.edu	37	19	42300634	42300634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42300634C>T	uc002orn.1	+	1	101	c.25C>T	c.(25-27)CAC>TAC	p.H9Y	CEACAM3_uc010eia.1_Missense_Mutation_p.H9Y|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	9						integral to membrane				skin(1)	1						AGCCTCTCCCCACAGAGAATG	0.602													25	43					0	0	1	0	0
CD79A	973	broad.mit.edu	37	19	42383213	42383213	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42383213C>T	uc002orv.2	+	2	418	c.233C>T	c.(232-234)CCT>CTT	p.P78L	CD79A_uc002oru.2_Missense_Mutation_p.P78L	NM_001783	NP_001774	P11912	CD79A_HUMAN	CD79A antigen isoform 1 precursor	78	Ig-like C2-type.|Extracellular (Potential).				B cell differentiation|B cell proliferation|B cell receptor signaling pathway	B cell receptor complex|external side of plasma membrane|integral to membrane|membrane raft|multivesicular body	transmembrane receptor activity			ovary(2)|pancreas(1)	3						ACGTGGCCCCCTGAGTTCTTG	0.617			O|S		DLBCL								29	77					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42474456	42474456	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42474456G>A	uc002osg.2	-	18	2577	c.2423C>T	c.(2422-2424)CCT>CTT	p.P808L	ATP1A3_uc010xwf.1_Missense_Mutation_p.P819L|ATP1A3_uc010xwg.1_Missense_Mutation_p.P778L|ATP1A3_uc010xwh.1_Missense_Mutation_p.P821L|ATP1A3_uc002osh.2_Missense_Mutation_p.P808L	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	808	Helical; (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TGAGATGGCAGGGACCTAGGC	0.632													15	36					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42482807	42482807	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42482807G>A	uc002osg.2	-	12	1735	c.1581C>T	c.(1579-1581)GCC>GCT	p.A527A	ATP1A3_uc010xwf.1_Silent_p.A538A|ATP1A3_uc010xwg.1_Silent_p.A497A|ATP1A3_uc010xwh.1_Silent_p.A540A|ATP1A3_uc002osh.2_Silent_p.A527A	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	527	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CATTCTGGAAGGCCTCCTTCA	0.662													20	81					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42482862	42482862	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42482862G>A	uc002osg.2	-	12	1680	c.1526C>T	c.(1525-1527)TCC>TTC	p.S509F	ATP1A3_uc010xwf.1_Missense_Mutation_p.S520F|ATP1A3_uc010xwg.1_Missense_Mutation_p.S479F|ATP1A3_uc010xwh.1_Missense_Mutation_p.S522F|ATP1A3_uc002osh.2_Missense_Mutation_p.S509F	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	509	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CAGGATGGTGGAGCAGCGGTC	0.627													43	86					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42485934	42485934	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42485934G>A	uc002osg.2	-	10	1396	c.1242C>T	c.(1240-1242)ATC>ATT	p.I414I	ATP1A3_uc010xwf.1_Silent_p.I425I|ATP1A3_uc010xwg.1_Silent_p.I384I|ATP1A3_uc010xwh.1_Silent_p.I427I|ATP1A3_uc002osh.2_Silent_p.I414I	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	414	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						AGAGCCCAGCGATGTGAGACA	0.622													20	52					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42489109	42489109	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42489109G>A	uc002osg.2	-	8	1108	c.954C>T	c.(952-954)ATC>ATT	p.I318I	ATP1A3_uc010xwf.1_Silent_p.I329I|ATP1A3_uc010xwg.1_Silent_p.I288I|ATP1A3_uc010xwh.1_Silent_p.I331I|ATP1A3_uc002osh.2_Silent_p.I318I	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	318	Helical; (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CATTGGCCACGATGATGCCGA	0.438													8	26					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42490089	42490090	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42490089_42490090CC>TT	uc002osg.2	-	6	686_687	c.532_533GG>AA	c.(532-534)GGG>AAG	p.G178K	ATP1A3_uc010xwf.1_Missense_Mutation_p.G189K|ATP1A3_uc010xwg.1_Missense_Mutation_p.G148K|ATP1A3_uc010xwh.1_Missense_Mutation_p.G191K|ATP1A3_uc002osh.2_Missense_Mutation_p.G178K	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	178	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CACCAGGTCCCCGACCACCACC	0.629													42	128					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42490132	42490132	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42490132C>T	uc002osg.2	-	6	644	c.490G>A	c.(490-492)GAA>AAA	p.E164K	ATP1A3_uc010xwf.1_Missense_Mutation_p.E175K|ATP1A3_uc010xwg.1_Missense_Mutation_p.E134K|ATP1A3_uc010xwh.1_Missense_Mutation_p.E177K|ATP1A3_uc002osh.2_Missense_Mutation_p.E164K	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	164	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TTCTCACCTTCCCGGATCACC	0.622													31	119					0	0	1	0	0
GRIK5	2901	broad.mit.edu	37	19	42546860	42546860	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42546860C>T	uc002osj.1	-	11	1352	c.1317G>A	c.(1315-1317)GGG>GGA	p.G439G	GRIK5_uc002osi.1_Silent_p.G11G|GRIK5_uc010eib.1_Silent_p.G358G	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	439	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	AGCGTTCGTTCCCCGACAGGG	0.652													16	33					0	0	1	0	0
GRIK5	2901	broad.mit.edu	37	19	42563605	42563605	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42563605C>T	uc002osj.1	-	5	618	c.583G>A	c.(583-585)GAC>AAC	p.D195N	GRIK5_uc010eib.1_Missense_Mutation_p.D114N	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	195	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	TCCCGGCTGTCGTCCAACATC	0.607													36	71					0	0	1	0	0
GRIK5	2901	broad.mit.edu	37	19	42566673	42566673	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42566673G>A	uc002osj.1	-	4	510	c.475C>T	c.(475-477)CCC>TCC	p.P159S	GRIK5_uc010eib.1_Missense_Mutation_p.P78S	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	159	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	CTGGCCGAGGGGTAGTTGAAG	0.572													33	54					0	0	1	0	0
ZNF574	64763	broad.mit.edu	37	19	42583205	42583205	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42583205C>A	uc002osm.3	+	2	616	c.447C>A	c.(445-447)CTC>CTA	p.L149L	ZNF574_uc002osk.3_Silent_p.L239L	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	149					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				AGACGCACCTCCGGGCCACAC	0.642													47	77					6.23363e-37	6.27303e-37	1	1	0
ZNF574	64763	broad.mit.edu	37	19	42584550	42584550	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42584550C>T	uc002osm.3	+	2	1961	c.1792C>T	c.(1792-1794)CGC>TGC	p.R598C	ZNF574_uc002osk.3_Missense_Mutation_p.R688C	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	598	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				GCTCATGCACCGCTACCATCA	0.622													12	39					0	0	1	0	0
DEDD2	162989	broad.mit.edu	37	19	42713887	42713887	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42713887G>A	uc002osu.1	-	4	622	c.554C>T	c.(553-555)CCC>CTC	p.P185L	DEDD2_uc002osv.1_RNA|DEDD2_uc002osw.1_Missense_Mutation_p.P180L|DEDD2_uc002osx.1_Missense_Mutation_p.P69S|DEDD2_uc002osy.1_Missense_Mutation_p.P185L|DEDD2_uc010eid.2_RNA	NM_133328	NP_579874	Q8WXF8	DEDD2_HUMAN	death effector domain-containing  DNA binding	185					activation of pro-apoptotic gene products|apoptotic nuclear change|cellular homeostasis|induction of apoptosis via death domain receptors|intracellular signal transduction|negative regulation of transcription, DNA-dependent|RNA processing|rRNA catabolic process|transcription, DNA-dependent	nucleolus	DNA binding|receptor signaling complex scaffold activity				0		Prostate(69;0.0704)				AGGTCTGGCGGGCTCTGACTG	0.672													41	109					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42796998	42796998	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42796998C>T	uc002otf.1	+	14	3496	c.3456C>T	c.(3454-3456)TTC>TTT	p.F1152F		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1152	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CTAGCCCTTTCCCCAGCGCCA	0.632			T	DUX4	soft tissue sarcoma								15	112					0	0	1	0	0
TMEM145	284339	broad.mit.edu	37	19	42821107	42821107	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42821107G>A	uc002otk.1	+	11	944	c.892G>A	c.(892-894)GAG>AAG	p.E298K		NM_173633	NP_775904	Q8NBT3	TM145_HUMAN	transmembrane protein 145	298	Helical; (Potential).					integral to membrane					0		Prostate(69;0.00682)				GCTCATCTACGAGGCGGAAGT	0.657													11	29					0	0	1	0	0
TMEM145	284339	broad.mit.edu	37	19	42821976	42821976	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42821976G>A	uc002otk.1	+	12	1068	c.1016G>A	c.(1015-1017)CGA>CAA	p.R339Q		NM_173633	NP_775904	Q8NBT3	TM145_HUMAN	transmembrane protein 145	339						integral to membrane					0		Prostate(69;0.00682)				GTCTCACTGCGACACTTTCCT	0.582													8	122					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42853767	42853768	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42853767_42853768CC>AT	uc002otl.3	+	13	2849_2850	c.2214_2215CC>AT	c.(2212-2217)ATCCAG>ATATAG	p.Q739*	MEGF8_uc002otm.3_Nonsense_Mutation_p.Q347*	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	806	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CAGTAGAGATCCAGGGCCAGCT	0.653													5	53					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42874365	42874365	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42874365C>T	uc002otl.3	+	38	7293	c.6658C>T	c.(6658-6660)CCG>TCG	p.P2220S	MEGF8_uc002otm.3_Missense_Mutation_p.P1828S|MEGF8_uc002otn.3_5'UTR	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2287	Extracellular (Potential).|Laminin EGF-like 3.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				GCAGTGCCTCCCGCTGTTTGT	0.612													17	49					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42880627	42880627	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42880627C>T	uc002otl.3	+	41	8672	c.8037C>T	c.(8035-8037)CCC>CCT	p.P2679P	MEGF8_uc002otm.3_Silent_p.P2287P|MEGF8_uc002otn.3_Silent_p.P340P	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2746	Gly-rich.|Cytoplasmic (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CCTGGGGACCCATGGGAGGGG	0.726													6	4					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42880695	42880695	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:42880695C>T	uc002otl.3	+	41	8740	c.8105C>T	c.(8104-8106)ACT>ATT	p.T2702I	MEGF8_uc002otm.3_Missense_Mutation_p.T2310I|MEGF8_uc002otn.3_Missense_Mutation_p.T363I	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2769	Gly-rich.|Cytoplasmic (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				GGGCCCATCACTCTCGAGCCC	0.721													3	5					0	0	1	0	0
CEACAM1	634	broad.mit.edu	37	19	43023124	43023124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43023124C>T	uc002otv.2	-	5	1335	c.1222G>A	c.(1222-1224)GAC>AAC	p.D408N	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_Intron|CEACAM1_uc002otw.2_Missense_Mutation_p.D408N|CEACAM1_uc010eij.2_Missense_Mutation_p.D408N|CEACAM1_uc002otx.2_Intron|CEACAM1_uc002oty.2_Intron|CEACAM1_uc002otz.2_Intron|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Missense_Mutation_p.D408N|CEACAM1_uc002oub.2_3'UTR	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	408	Ig-like C2-type 3.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	ATGATGGGGTCGCTTTGGTTC	0.488													22	125					0	0	1	0	0
CEACAM1	634	broad.mit.edu	37	19	43023314	43023314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43023314C>T	uc002otv.2	-	5	1145	c.1032G>A	c.(1030-1032)GTG>GTA	p.V344V	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_Intron|CEACAM1_uc002otw.2_Silent_p.V344V|CEACAM1_uc010eij.2_Silent_p.V344V|CEACAM1_uc002otx.2_Intron|CEACAM1_uc002oty.2_Intron|CEACAM1_uc002otz.2_Intron|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Silent_p.V344V|CEACAM1_uc002oub.2_Intron	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	344	Ig-like C2-type 3.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	AGGTCAGGTTCACAGAGTCCT	0.502													56	98					0	0	1	0	0
CEACAM1	634	broad.mit.edu	37	19	43026203	43026203	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43026203C>T	uc002otv.2	-	3	689	c.576G>A	c.(574-576)CAG>CAA	p.Q192Q	uc010eif.1_Intron|uc002ott.1_RNA|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_5'Flank|CEACAM1_uc002otw.2_Silent_p.Q192Q|CEACAM1_uc010eij.2_Silent_p.Q192Q|CEACAM1_uc002otx.2_Silent_p.Q192Q|CEACAM1_uc002oty.2_Silent_p.Q192Q|CEACAM1_uc002otz.2_Silent_p.Q192Q|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Silent_p.Q192Q|CEACAM1_uc002oub.2_Silent_p.Q192Q|CEACAM1_uc002ouc.2_Silent_p.Q192Q	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	192	Ig-like C2-type 1.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	CATTGGACAGCTGCAGCCTGG	0.532													60	264					0	0	1	0	0
PSG8	440533	broad.mit.edu	37	19	43258539	43258539	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43258539G>A	uc002ouo.2	-	5	1287	c.1189C>T	c.(1189-1191)CGT>TGT	p.R397C	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_Missense_Mutation_p.R236C|PSG8_uc002ouh.2_Missense_Mutation_p.R397C|PSG8_uc010ein.2_Missense_Mutation_p.R275C|PSG8_uc002ouj.3_Missense_Mutation_p.R179C|PSG8_uc002ouk.3_Missense_Mutation_p.R236C|PSG8_uc002oul.3_Missense_Mutation_p.R397C|PSG8_uc002oum.3_Missense_Mutation_p.R304C|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.R304C	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	397	Ig-like C2-type 3.					extracellular region					0		Prostate(69;0.00899)				GCTGAGTTACGAACAGAGCAA	0.448													39	655					0	0	1	0	0
PSG8	440533	broad.mit.edu	37	19	43259160	43259160	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43259160G>A	uc002ouo.2	-	4	1066	c.968C>T	c.(967-969)CCA>CTA	p.P323L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_Intron|PSG8_uc002oui.2_Missense_Mutation_p.P162L|PSG8_uc002ouh.2_Missense_Mutation_p.P323L|PSG8_uc010ein.2_Missense_Mutation_p.P201L|PSG8_uc002ouj.3_Missense_Mutation_p.P105L|PSG8_uc002ouk.3_Missense_Mutation_p.P162L|PSG8_uc002oul.3_Missense_Mutation_p.P323L|PSG8_uc002oum.3_Missense_Mutation_p.P230L|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.P230L	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	323	Ig-like C2-type 2.					extracellular region					0		Prostate(69;0.00899)				CAGGGTGACTGGGTAACTGCG	0.478													43	244					0	0	1	0	0
PSG8	440533	broad.mit.edu	37	19	43268136	43268136	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43268136G>A	uc002ouo.2	-	2	460	c.362C>T	c.(361-363)ACC>ATC	p.T121I	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc002oui.2_Intron|PSG8_uc002ouh.2_Missense_Mutation_p.T121I|PSG8_uc010ein.2_Intron|PSG8_uc002ouj.3_5'UTR|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Missense_Mutation_p.T121I|PSG8_uc002oum.3_Missense_Mutation_p.T121I|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.T121I	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	121	Ig-like V-type.					extracellular region					0		Prostate(69;0.00899)				GATGTGTAAGGTGTAGGATCC	0.443													144	569					0	0	1	0	0
PSG8	440533	broad.mit.edu	37	19	43359763	43359763	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43359763G>A	uc002oul.3	-	1	108	c.9C>T	c.(7-9)CCC>CCT	p.P3P	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG8_uc002oum.3_Silent_p.P3P|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Silent_p.P3P|PSG10_uc010eip.2_RNA|PSG1_uc002our.1_Intron|PSG1_uc010eio.1_Intron|PSG1_uc002oux.1_Intron|PSG1_uc002ouy.1_Intron	NM_001130168	NP_001123640	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	3						extracellular region					0		Prostate(69;0.00899)				GGGCTGAGAGGGGCCCCATGG	0.582													39	222					0	0	1	0	0
PSG1	5669	broad.mit.edu	37	19	43372307	43372307	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43372307G>A	uc002ovb.2	-	5	1327	c.1189C>T	c.(1189-1191)CGT>TGT	p.R397C	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_Intron|PSG1_uc002our.1_Missense_Mutation_p.R397C|PSG1_uc010eio.1_Missense_Mutation_p.R397C|PSG1_uc002oux.1_Missense_Mutation_p.R326C|PSG1_uc002ouy.1_Missense_Mutation_p.R304C|PSG1_uc002ouz.1_Missense_Mutation_p.R397C|PSG1_uc002ova.1_Missense_Mutation_p.R304C|PSG1_uc002ovc.2_Missense_Mutation_p.R304C|PSG1_uc002ovd.1_Missense_Mutation_p.R397C	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	397	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				GCTGAGTTACGAACAGAGCAA	0.448													139	293					0	0	1	0	0
PSG1	5669	broad.mit.edu	37	19	43376039	43376039	+	Missense_Mutation	SNP	C	T	T	rs1058692		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43376039C>T	uc002ovb.2	-	3	727	c.589G>A	c.(589-591)GAA>AAA	p.E197K	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.E197K|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.E197K|PSG1_uc010eio.1_Missense_Mutation_p.E197K|PSG1_uc002oux.1_Missense_Mutation_p.E126K|PSG1_uc002ouy.1_Missense_Mutation_p.E197K|PSG1_uc002ouz.1_Missense_Mutation_p.E197K|PSG1_uc002ova.1_Intron|PSG1_uc002ovc.2_Intron|PSG1_uc002ovd.1_Missense_Mutation_p.E197K	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	197	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				CTGTTGGTTTCGGACAGCTTC	0.527													34	579					0	0	1	0	0
PSG1	5669	broad.mit.edu	37	19	43376150	43376150	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43376150C>T	uc002ovb.2	-	3	616	c.478G>A	c.(478-480)GAG>AAG	p.E160K	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.E160K|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.E160K|PSG1_uc010eio.1_Missense_Mutation_p.E160K|PSG1_uc002oux.1_Missense_Mutation_p.E89K|PSG1_uc002ouy.1_Missense_Mutation_p.E160K|PSG1_uc002ouz.1_Missense_Mutation_p.E160K|PSG1_uc002ova.1_Intron|PSG1_uc002ovc.2_Intron|PSG1_uc002ovd.1_Missense_Mutation_p.E160K	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	160	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				TCCATGGTCTCCCTGGGATTT	0.537													81	200					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43411806	43411806	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43411806C>T	uc002ovj.1	-	4	959	c.907G>A	c.(907-909)GAA>AAA	p.E303K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.E310K|PSG6_uc002ovi.2_Missense_Mutation_p.E304K|PSG6_uc010xwk.1_Missense_Mutation_p.E143K|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_Missense_Mutation_p.E93K|PSG6_uc002ovf.1_Intron|PSG6_uc002ovg.1_Missense_Mutation_p.E303K	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	303	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GGTCCTGTTTCATTTCTCGTG	0.493													105	248					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43412005	43412005	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43412005C>T	uc002ovj.1	-	4	760	c.708G>A	c.(706-708)CCG>CCA	p.P236P	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Silent_p.P243P|PSG6_uc002ovi.2_Silent_p.P237P|PSG6_uc010xwk.1_Silent_p.P76P|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_Silent_p.A26A|PSG6_uc002ovf.1_Intron|PSG6_uc002ovg.1_Silent_p.P236P	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	236					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TGGGCAGCTTCGCTGTGTGGA	0.493													77	182					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43414954	43414954	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43414954C>T	uc002ovj.1	-	3	536	c.484G>A	c.(484-486)GAG>AAG	p.E162K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.E169K|PSG6_uc002ovi.2_Missense_Mutation_p.E163K|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.E162K|PSG6_uc002ovg.1_Missense_Mutation_p.E162K	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	162	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				CGCACAGCCTCCATGACCTCC	0.542													58	256					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43420354	43420354	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43420354C>T	uc002ovj.1	-	2	402	c.350G>A	c.(349-351)GGA>GAA	p.G117E	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ovf.1_Missense_Mutation_p.G117E|PSG6_uc002ovg.1_Missense_Mutation_p.G117E	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	117	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GGTGTAGGATCCTGCATCCTC	0.468													156	310					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43430058	43430058	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43430058C>T	uc002ovl.3	-	6	1212	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Silent_p.G283G|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Silent_p.G96G|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Silent_p.G283G|PSG7_uc010xwl.1_Silent_p.G248G	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	370	Ig-like C2-type 3.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GCTGAAACTTCCCATTAATTG	0.458													94	298					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43430821	43430821	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43430821C>T	uc002ovl.3	-	5	859	c.757G>A	c.(757-759)GAG>AAG	p.E253K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Missense_Mutation_p.E131K	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	253	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TCCTTATTCTCCCTGGGGTTT	0.488													73	366					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43430867	43430867	+	Silent	SNP	C	T	T	rs145405049		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43430867C>T	uc002ovl.3	-	5	813	c.711G>A	c.(709-711)CCG>CCA	p.P237P	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Silent_p.P115P	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	237				LNLLP -> IIVPV (in Ref. 3).	female pregnancy	extracellular region					0		Prostate(69;0.00682)				TGGGCAGCTTCGCTGTGTGAA	0.473													59	282					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43433789	43433789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43433789C>T	uc002ovl.3	-	4	616	c.514G>A	c.(514-516)GAG>AAG	p.E172K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_5'Flank|PSG7_uc002out.1_5'UTR|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Missense_Mutation_p.E50K	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	172	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TCTGGAGTCTCAGGATCACAG	0.527													119	295					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43439744	43439744	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43439744G>A	uc002ovl.3	-	2	344	c.242C>T	c.(241-243)TCA>TTA	p.S81L	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Intron	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	81	Ig-like V-type.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TACTATATATGATGTAACATA	0.423													88	329					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43439821	43439821	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43439821G>A	uc002ovl.3	-	2	267	c.165C>T	c.(163-165)GTC>GTT	p.V55V	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Intron	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	55	Ig-like V-type.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GCAAATTGTGGACAAGTAGAA	0.453													105	204					0	0	1	0	0
PSG11	5680	broad.mit.edu	37	19	43519322	43519322	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43519322G>A	uc002ovm.1	-	4	1017	c.910C>T	c.(910-912)CGT>TGT	p.R304C	PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG11_uc002ovn.1_Missense_Mutation_p.R310C|PSG11_uc002ovo.1_Missense_Mutation_p.R182C|PSG11_uc002ovp.1_Missense_Mutation_p.R182C	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	304	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GCTGAGTTACGAGCAGAGCAA	0.458													119	120					0	0	1	0	0
PSG2	5670	broad.mit.edu	37	19	43576027	43576027	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43576027C>T	uc002ovr.2	-	4	882	c.789G>A	c.(787-789)GCG>GCA	p.A263A	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Silent_p.A263A|PSG2_uc010eiq.1_Silent_p.A263A|PSG2_uc002ovs.3_Silent_p.A263A|PSG2_uc002ovt.3_Silent_p.A263A	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	263	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				GGTTAGAGTTCGCGAAGCAAG	0.443													116	256					0	0	1	0	0
PSG2	5670	broad.mit.edu	37	19	43579536	43579536	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43579536G>A	uc002ovr.2	-	3	772	c.679C>T	c.(679-681)CGC>TGC	p.R227C	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.R227C|PSG2_uc010eiq.1_Missense_Mutation_p.R227C|PSG2_uc002ovs.3_Missense_Mutation_p.R227C|PSG2_uc002ovt.3_Missense_Mutation_p.R227C	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	227	Ig-like C2-type 1.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				GGGTCACTGCGGCTGGCACTC	0.527													39	447					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43585168	43585168	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43585168C>T	uc002ovi.2	-	2	388	c.295G>A	c.(295-297)GAA>AAA	p.E99K	PSG6_uc010xwk.1_Intron|PSG2_uc002ovr.2_Missense_Mutation_p.E99K|PSG2_uc002ovq.3_Missense_Mutation_p.E99K|PSG2_uc010eiq.1_Missense_Mutation_p.E99K|PSG2_uc002ovs.3_Missense_Mutation_p.E99K|PSG2_uc002ovt.3_Missense_Mutation_p.E99K			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	98	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TATGCTGTTTCTCGTCCACTA	0.453													123	341					0	0	1	0	0
PSG5	5673	broad.mit.edu	37	19	43679421	43679421	+	Missense_Mutation	SNP	G	A	A	rs150587441	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43679421G>A	uc002ovu.2	-	4	1041	c.910C>T	c.(910-912)CGT>TGT	p.R304C	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Missense_Mutation_p.R179C|PSG5_uc002ovx.2_Missense_Mutation_p.R304C|PSG5_uc002ovv.2_Missense_Mutation_p.R397C|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	304	Ig-like C2-type 2.				female pregnancy	extracellular region		p.R304C(1)		skin(3)	3		Prostate(69;0.00899)				GCTGAGTTACGAACAGAGCAA	0.443													106	262					0	0	1	0	0
PSG5	5673	broad.mit.edu	37	19	43680132	43680132	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43680132C>T	uc002ovu.2	-	3	730	c.599G>A	c.(598-600)AGG>AAG	p.R200K	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.R200K|PSG5_uc002ovv.2_Missense_Mutation_p.R293K|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	200	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				AATGAGGATCCTGTTTTCAAT	0.507													79	197					0	0	1	0	0
PSG5	5673	broad.mit.edu	37	19	43680245	43680245	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43680245C>T	uc002ovu.2	-	3	617	c.486G>A	c.(484-486)AAG>AAA	p.K162K	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Silent_p.K162K|PSG5_uc002ovv.2_Silent_p.K255K|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	162	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				CTAAGACATCCTTATTCTCCC	0.493													92	262					0	0	1	0	0
PSG5	5673	broad.mit.edu	37	19	43680255	43680255	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43680255C>T	uc002ovu.2	-	3	607	c.476G>A	c.(475-477)AGG>AAG	p.R159K	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.R159K|PSG5_uc002ovv.2_Missense_Mutation_p.R252K|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	159	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				CTTATTCTCCCTGGGTTTTGA	0.493													112	261					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43699232	43699232	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43699232C>T	uc002ovy.2	-	4	1005	c.903G>A	c.(901-903)ACG>ACA	p.T301T	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Silent_p.T208T|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	301	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				TTTCATTTCTCGTGACATTGG	0.478													35	301					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43699242	43699242	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43699242G>A	uc002ovy.2	-	4	995	c.893C>T	c.(892-894)CCC>CTC	p.P298L	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.P205L|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	298	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				CGTGACATTGGGTAGAATGAG	0.483													68	274					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43699252	43699252	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43699252G>A	uc002ovy.2	-	4	985	c.883C>T	c.(883-885)CTC>TTC	p.L295F	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.L202F|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	295	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GGTAGAATGAGGATCCTGTTT	0.478													27	320					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43708284	43708284	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43708284G>A	uc002ovy.2	-	2	286	c.184C>T	c.(184-186)CTT>TTT	p.L62F	PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.L62F|PSG4_uc002ovz.2_Missense_Mutation_p.L62F	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	62	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				TAGCCAGCAAGATTCTGGGGC	0.448													29	364					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43708292	43708292	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43708292G>A	uc002ovy.2	-	2	278	c.176C>T	c.(175-177)CCC>CTC	p.P59L	PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.P59L|PSG4_uc002ovz.2_Missense_Mutation_p.P59L	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	59	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				AAGATTCTGGGGCAAATTGTG	0.443													30	347					0	0	1	0	0
PSG9	5678	broad.mit.edu	37	19	43757787	43757787	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43757787C>T	uc002owd.3	-	6	1354	c.1255G>A	c.(1255-1257)GGA>AGA	p.G419R	PSG9_uc002owe.3_Missense_Mutation_p.G326R|PSG9_uc010xwm.1_Missense_Mutation_p.G326R|PSG9_uc002owf.3_Missense_Mutation_p.G233R	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	419					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				gtcaggtctccatggcaggga	0.095													7	105					0	0	1	0	0
PSG9	5678	broad.mit.edu	37	19	43766210	43766210	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43766210G>A	uc002owd.3	-	3	610	c.511C>T	c.(511-513)CCT>TCT	p.P171S	PSG9_uc002owe.3_Missense_Mutation_p.P171S|PSG9_uc010xwm.1_Intron|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Missense_Mutation_p.P171S|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	171	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGAGTCTCAGGATCACAGATT	0.532													111	275					0	0	1	0	0
PSG9	5678	broad.mit.edu	37	19	43771946	43771946	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43771946G>A	uc002owd.3	-	2	519	c.420C>T	c.(418-420)TTC>TTT	p.F140F	PSG9_uc002owe.3_Silent_p.F140F|PSG9_uc010xwm.1_Silent_p.F140F|PSG9_uc002owf.3_Silent_p.F140F|PSG9_uc002owg.2_Silent_p.F140F|PSG9_uc002owh.2_Silent_p.F140F	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	140	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGTATAAGGTGAAGGTGAAAT	0.488													77	209					0	0	1	0	0
CD177	57126	broad.mit.edu	37	19	43858077	43858077	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43858077G>A	uc002owi.2	+	2	167	c.125G>A	c.(124-126)TGG>TAG	p.W42*	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	42					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				CCCCGGCAATGGACCCCTAAG	0.612													33	64					0	0	1	0	0
CD177	57126	broad.mit.edu	37	19	43858486	43858486	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43858486G>A	uc002owi.2	+	3	363	c.321G>A	c.(319-321)GAG>GAA	p.E107E	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	107					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				GCCGCCAGGAGGACTTCTGCA	0.677													27	64					0	0	1	0	0
CD177	57126	broad.mit.edu	37	19	43865643	43865643	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43865643C>T	uc002owi.2	+	9	1035	c.993C>T	c.(991-993)CCC>CCT	p.P331P	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	331	UPAR/Ly6 2.				blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				GTGTGCAGCCCCTTGGAACCT	0.602													9	69					0	0	1	0	0
CD177	57126	broad.mit.edu	37	19	43866259	43866259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43866259G>A	uc002owi.2	+	10	1143	c.1101G>A	c.(1099-1101)ATG>ATA	p.M367I	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	367	UPAR/Ly6 2.				blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				CCACCAAAATGAGCATTCAGG	0.473													7	88					0	0	1	0	0
LYPD3	27076	broad.mit.edu	37	19	43965559	43965559	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43965559G>A	uc002owl.1	-	5	1093	c.985C>T	c.(985-987)CCC>TCC	p.P329S	LYPD3_uc002owm.2_3'UTR	NM_014400	NP_055215	O95274	LYPD3_HUMAN	GPI-anchored metastasis-associated protein	329						anchored to plasma membrane				pancreas(1)	1		Prostate(69;0.0153)				CCAGCTGTGGGAGCCACACAG	0.602													12	29					0	0	1	0	0
PHLDB3	653583	broad.mit.edu	37	19	43990966	43990966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:43990966G>A	uc002own.3	-	11	1565	c.1306C>T	c.(1306-1308)CTC>TTC	p.L436F	PHLDB3_uc010eit.2_Missense_Mutation_p.L140F	NM_198850	NP_942147	Q6NSJ2	PHLB3_HUMAN	pleckstrin homology-like domain, family B,	436											0		Prostate(69;0.0153)				AGCTGGTAGAGGGGGTATCTG	0.612													3	19					0	0	1	0	0
PHLDB3	653583	broad.mit.edu	37	19	44005977	44005977	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44005977C>T	uc002own.3	-	4	702	c.443G>A	c.(442-444)CGA>CAA	p.R148Q	PHLDB3_uc002owo.2_Missense_Mutation_p.R148Q	NM_198850	NP_942147	Q6NSJ2	PHLB3_HUMAN	pleckstrin homology-like domain, family B,	148	Potential.										0		Prostate(69;0.0153)				AGCGGCCACTCGCTCCCCAGC	0.706													4	8					0	0	1	0	0
CADM4	199731	broad.mit.edu	37	19	44127496	44127496	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44127496C>T	uc002oxc.1	-	9	1202	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K		NM_145296	NP_660339	Q8NFZ8	CADM4_HUMAN	cell adhesion molecule 4 precursor	385	Cytoplasmic (Potential).				cell adhesion	integral to membrane					0		Prostate(69;0.0199)				ATGAAGAATTCCTCTTTCCTC	0.577													44	105					0	0	1	0	0
PLAUR	5329	broad.mit.edu	37	19	44171764	44171764	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44171764G>A	uc002oxf.1	-	2	365	c.135C>T	c.(133-135)CTC>CTT	p.L45L	PLAUR_uc002oxd.1_Silent_p.L45L|PLAUR_uc002oxe.1_Silent_p.L40L|PLAUR_uc002oxg.1_Silent_p.L45L	NM_002659	NP_002650	Q03405	UPAR_HUMAN	plasminogen activator, urokinase receptor	45	UPAR/Ly6 1.				attachment of GPI anchor to protein|blood coagulation|C-terminal protein lipidation|cellular component movement|chemotaxis|fibrinolysis|regulation of proteolysis	anchored to membrane|cell surface|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|extrinsic to membrane|integral to membrane|plasma membrane	enzyme binding|U-plasminogen activator receptor activity			ovary(1)	1		Prostate(69;0.0153)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Streptokinase(DB00086)|Tenecteplase(DB00031)|Urokinase(DB00013)	TGGTCCTGCAGAGGTCCTGTC	0.612													20	50					0	0	1	0	0
IRGC	56269	broad.mit.edu	37	19	44222779	44222779	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44222779G>A	uc002oxh.2	+	2	216	c.69G>A	c.(67-69)AGG>AGA	p.R23R		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	23						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				CCAAGGAAAGGCTGGAGGCCC	0.642													40	85					0	0	1	0	0
IRGC	56269	broad.mit.edu	37	19	44223154	44223154	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44223154C>T	uc002oxh.2	+	2	591	c.444C>T	c.(442-444)GTC>GTT	p.V148V		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	148						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				GCGGGGCCGTCGAGACCCGCC	0.662													4	17					0	0	1	0	0
IRGC	56269	broad.mit.edu	37	19	44223272	44223272	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44223272G>A	uc002oxh.2	+	2	709	c.562G>A	c.(562-564)GCC>ACC	p.A188T		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	188						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				CTTCAGAGAGGCCGCTGTCCT	0.672													16	42					0	0	1	0	0
KCNN4	3783	broad.mit.edu	37	19	44278350	44278350	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44278350G>A	uc002oxl.2	-	3	1073	c.677C>T	c.(676-678)GCC>GTC	p.A226V	KCNN4_uc010eiz.2_Missense_Mutation_p.A139V|KCNN4_uc010eja.1_RNA	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	226	Helical; Name=Segment S5; (Potential).				defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	TCACCTCTCGGCCACGGACAG	0.677											OREG0025535	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	17					0	0	1	0	0
KCNN4	3783	broad.mit.edu	37	19	44278616	44278616	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44278616G>A	uc002oxl.2	-	3	807	c.411C>T	c.(409-411)TCC>TCT	p.S137S	KCNN4_uc010eiz.2_Silent_p.S50S|KCNN4_uc010eja.1_RNA	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	137					defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	AGGGCTGCGGGGAGGTCAGCG	0.731											OREG0025535	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	10					0	0	1	0	0
ZNF404	342908	broad.mit.edu	37	19	44378052	44378052	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44378052C>T	uc002oxs.3	-	2	314	c.305G>A	c.(304-306)GGA>GAA	p.G102E		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	105					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				ACTAAAACATCCCACTTTAGG	0.328													40	148					0	0	1	0	0
ZNF45	7596	broad.mit.edu	37	19	44418275	44418275	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44418275T>A	uc002oxu.1	-	4	1412	c.1313A>T	c.(1312-1314)CAT>CTT	p.H438L	ZNF45_uc002oxw.1_Missense_Mutation_p.H438L|ZNF45_uc002oxv.1_Missense_Mutation_p.H438L	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	438	C2H2-type 10.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TTCCCCTGTATGGACTCTAAA	0.478													32	110					0	0	1	0	0
ZNF45	7596	broad.mit.edu	37	19	44418361	44418361	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44418361G>A	uc002oxu.1	-	4	1326	c.1227C>T	c.(1225-1227)GGC>GGT	p.G409G	ZNF45_uc002oxw.1_Silent_p.G409G|ZNF45_uc002oxv.1_Silent_p.G409G	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	409	C2H2-type 9.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						CTCCAGTATGGCCTCTTTGAT	0.478													33	101					0	0	1	0	0
ZNF221	7638	broad.mit.edu	37	19	44470085	44470085	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44470085C>T	uc002oxx.2	+	6	759	c.431C>T	c.(430-432)TCT>TTT	p.S144F	ZNF221_uc010ejb.1_Missense_Mutation_p.S144F|ZNF221_uc010xws.1_Missense_Mutation_p.S144F	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				AGGAACAGCTCTCAGTTCTTC	0.443													27	110					0	0	1	0	0
ZNF221	7638	broad.mit.edu	37	19	44470696	44470696	+	Missense_Mutation	SNP	C	T	T	rs150319141	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44470696C>T	uc002oxx.2	+	6	1370	c.1042C>T	c.(1042-1044)CGT>TGT	p.R348C	ZNF221_uc010ejb.1_Missense_Mutation_p.R348C|ZNF221_uc010xws.1_Missense_Mutation_p.R348C	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	348	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				CAAGAACTTTCGTCAGAGATC	0.408													37	190					0	0	1	0	0
ZNF155	7711	broad.mit.edu	37	19	44500820	44500820	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44500820C>T	uc002oxy.1	+	5	1016	c.811C>T	c.(811-813)CAT>TAT	p.H271Y	ZNF155_uc002oxz.1_Missense_Mutation_p.H271Y|ZNF155_uc010xwt.1_Missense_Mutation_p.H282Y	NM_003445	NP_003436	Q12901	ZN155_HUMAN	zinc finger protein 155	271	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Prostate(69;0.0352)				GGCCTTCATTCATGATTCCCA	0.393													71	173					0	0	1	0	0
ZNF230	7773	broad.mit.edu	37	19	44514663	44514663	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44514663C>T	uc002oyb.1	+	5	723	c.472C>T	c.(472-474)CCT>TCT	p.P158S		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	158	KRNB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				CTTTGATCCTCCTCAGCAGTT	0.438													59	133					0	0	1	0	0
ZNF284	342909	broad.mit.edu	37	19	44590866	44590866	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44590866C>T	uc002oyg.1	+	5	1451	c.1235C>T	c.(1234-1236)TCA>TTA	p.S412L	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	412	C2H2-type 10; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				TATATGAATTCACAGGGCCAT	0.433													58	137					0	0	1	0	0
ZNF224	7767	broad.mit.edu	37	19	44610887	44610887	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44610887C>T	uc002oyh.1	+	6	876	c.574C>T	c.(574-576)CGT>TGT	p.R192C	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	192	C2H2-type 1.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				CTCAGCCCTTCGTATTCATCA	0.413													27	248					0	0	1	0	0
ZNF224	7767	broad.mit.edu	37	19	44611651	44611651	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44611651C>T	uc002oyh.1	+	6	1640	c.1338C>T	c.(1336-1338)CAC>CAT	p.H446H	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	446	C2H2-type 10.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				TTGACTTTCACCAGCGCGTCC	0.463													15	101					0	0	1	0	0
ZNF226	7769	broad.mit.edu	37	19	44676255	44676255	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44676255C>T	uc002oyp.2	+	4	174	c.30C>T	c.(28-30)TTC>TTT	p.F10F	ZNF226_uc002oyn.2_Silent_p.F10F|ZNF226_uc002oyo.2_Silent_p.F10F|ZNF226_uc002oyq.2_5'UTR|ZNF226_uc002oyr.2_5'UTR|ZNF226_uc010ejg.2_Silent_p.F10F|ZNF226_uc002oys.2_Silent_p.F10F|ZNF226_uc002oyt.2_Silent_p.F10F	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	10	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				CAGTGACCTTCAAGGACGTGG	0.507													42	141					0	0	1	0	0
ZNF226	7769	broad.mit.edu	37	19	44680451	44680451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44680451C>T	uc002oyp.2	+	6	1180	c.1036C>T	c.(1036-1038)CGT>TGT	p.R346C	ZNF226_uc002oyq.2_Missense_Mutation_p.R229C|ZNF226_uc002oyr.2_Missense_Mutation_p.R229C|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Missense_Mutation_p.R346C|ZNF226_uc002oyt.2_Missense_Mutation_p.R346C	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	346	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				AGGTTTCAGTCGTAGATCAGC	0.463													37	93					0	0	1	0	0
ZNF233	353355	broad.mit.edu	37	19	44777202	44777202	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44777202G>A	uc002oyz.1	+	5	516	c.389G>A	c.(388-390)AGG>AAG	p.R130K	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_5'UTR	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				CAAGGCAAGAGGTCCAAGTTG	0.383													20	88					0	0	1	0	0
ZNF235	9310	broad.mit.edu	37	19	44791515	44791515	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44791515G>A	uc002oza.3	-	5	2176	c.2073C>T	c.(2071-2073)GGC>GGT	p.G691G	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Silent_p.G687G|ZNF235_uc010xwx.1_Silent_p.G605G	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	691	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				CCTGACTGAAGCCCTTCCCAC	0.512													24	98					0	0	1	0	0
ZFP112	7771	broad.mit.edu	37	19	44833552	44833552	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44833552G>A	uc010ejj.2	-	5	889	c.776C>T	c.(775-777)CCA>CTA	p.P259L	ZFP112_uc002ozc.3_Missense_Mutation_p.P253L|ZFP112_uc010xwy.1_Missense_Mutation_p.P276L|ZFP112_uc010xwz.1_Missense_Mutation_p.P258L	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	259	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						CCCAGTACATGGATAGGGCTT	0.428													36	106					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44890982	44890982	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44890982C>T	uc002ozd.3	-	4	1512	c.1425G>A	c.(1423-1425)CAG>CAA	p.Q475Q	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Silent_p.Q482Q	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	475	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						TGTGAACTCTCTGATGAGTGT	0.403													13	97					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44932910	44932910	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44932910C>T	uc002oze.1	-	6	2480	c.2046G>A	c.(2044-2046)AAG>AAA	p.K682K	ZNF229_uc010ejk.1_Silent_p.K336K|ZNF229_uc010ejl.1_Silent_p.K676K	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	682					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				ACGTATAGGGCTTTTTTCCCG	0.502													47	117					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44933284	44933284	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44933284C>T	uc002oze.1	-	6	2106	c.1672G>A	c.(1672-1674)GAC>AAC	p.D558N	ZNF229_uc010ejk.1_Missense_Mutation_p.D212N|ZNF229_uc010ejl.1_Missense_Mutation_p.D552N	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	558	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				ATGTGGAGGTCGGAGCTCCGG	0.542													33	80					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44933292	44933292	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44933292C>T	uc002oze.1	-	6	2098	c.1664G>A	c.(1663-1665)CGG>CAG	p.R555Q	ZNF229_uc010ejk.1_Missense_Mutation_p.R209Q|ZNF229_uc010ejl.1_Missense_Mutation_p.R549Q	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	555	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GTCGGAGCTCCGGCCAAAGCT	0.532													14	105					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44933552	44933552	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44933552C>T	uc002oze.1	-	6	1838	c.1404G>A	c.(1402-1404)AAG>AAA	p.K468K	ZNF229_uc010ejk.1_Silent_p.K122K|ZNF229_uc010ejl.1_Silent_p.K462K	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	468	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				AGCTGAATCCCTTTCCACACT	0.552													19	58					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44933793	44933793	+	Missense_Mutation	SNP	C	T	T	rs148444351	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44933793C>T	uc002oze.1	-	6	1597	c.1163G>A	c.(1162-1164)CGA>CAA	p.R388Q	ZNF229_uc010ejk.1_Missense_Mutation_p.R42Q|ZNF229_uc010ejl.1_Missense_Mutation_p.R382Q	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	388	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GTTTGAACTTCGACCAAATGC	0.478													13	175					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44933907	44933907	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44933907C>T	uc002oze.1	-	6	1483	c.1049G>A	c.(1048-1050)AGA>AAA	p.R350K	ZNF229_uc010ejk.1_Missense_Mutation_p.R4K|ZNF229_uc010ejl.1_Missense_Mutation_p.R344K	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	350	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GACATCACATCTATAGGGCAT	0.507													12	124					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44934018	44934018	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:44934018C>T	uc002oze.1	-	6	1372	c.938G>A	c.(937-939)AGA>AAA	p.R313K	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.R307K	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	313	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				TGTGGGAACTCTTTGATGTCT	0.507													7	38					0	0	1	0	0
CEACAM20	125931	broad.mit.edu	37	19	45015121	45015121	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45015121G>A	uc010ejn.1	-	12	1720	c.1704C>T	c.(1702-1704)TCC>TCT	p.S568S	CEACAM20_uc010ejo.1_Silent_p.S556S|CEACAM20_uc010ejp.1_Silent_p.S475S|CEACAM20_uc010ejq.1_Silent_p.S463S	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	568	Cytoplasmic (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TTGGCACAGTGGAGACCAATC	0.493													15	41					0	0	1	0	0
CEACAM20	125931	broad.mit.edu	37	19	45024569	45024569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45024569G>A	uc010ejn.1	-	5	985	c.969C>T	c.(967-969)GCC>GCT	p.A323A	CEACAM20_uc010ejo.1_Silent_p.A323A|CEACAM20_uc010ejp.1_Silent_p.A323A|CEACAM20_uc010ejq.1_Silent_p.A323A	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	323	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				AGACCTCACAGGCATAGGGCC	0.642													20	47					0	0	1	0	0
CEACAM20	125931	broad.mit.edu	37	19	45028281	45028282	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45028281_45028282GG>AA	uc010ejn.1	-	3	225_226	c.209_210CC>TT	c.(208-210)CCC>CTT	p.P70L	CEACAM20_uc010ejo.1_Missense_Mutation_p.P70L|CEACAM20_uc010ejp.1_Missense_Mutation_p.P70L|CEACAM20_uc010ejq.1_Missense_Mutation_p.P70L	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	70	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				CTGCAATGGAGGGTTTGGCCAG	0.525													11	51					0	0	1	0	0
CEACAM16	388551	broad.mit.edu	37	19	45209064	45209064	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45209064G>A	uc010xxd.1	+	5	1072	c.866G>A	c.(865-867)GGG>GAG	p.G289E	CEACAM16_uc002ozq.2_Missense_Mutation_p.G348E	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	289										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				GCCCAGGAGGGGACGTACACA	0.587													47	82					0	0	1	0	0
CEACAM16	388551	broad.mit.edu	37	19	45211365	45211365	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45211365G>A	uc010xxd.1	+	6	1379	c.1173G>A	c.(1171-1173)CAG>CAA	p.Q391Q	CEACAM16_uc002ozq.2_Silent_p.Q450Q	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	391										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				TGTTGGTGCAGAAGCTGAACC	0.632													10	10					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45281205	45281206	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45281205_45281206CC>TT	uc002ozs.2	+	1	80_81	c.17_18CC>TT	c.(16-18)GCC>GTT	p.A6V	CBLC_uc010ejt.2_Missense_Mutation_p.A6V	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	6					cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				CTGGCGGTGGCCCCGTGGGGGC	0.713			M		AML								9	15					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45281402	45281402	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45281402G>A	uc002ozs.2	+	1	277	c.214G>A	c.(214-216)GGT>AGT	p.G72S	CBLC_uc010ejt.2_Missense_Mutation_p.G72S	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	72	4H.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				cggccccgggggtcccggcgg	0.527			M		AML								8	6					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45284519	45284519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45284519G>A	uc002ozs.2	+	3	619	c.556G>A	c.(556-558)GAA>AAA	p.E186K	CBLC_uc010ejt.2_Missense_Mutation_p.E186K	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	186	EF-hand-like.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				CCACCCTGTGGAACCAGGCTG	0.642			M		AML								26	67					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45284584	45284584	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45284584C>T	uc002ozs.2	+	3	684	c.621C>T	c.(619-621)TCC>TCT	p.S207S	CBLC_uc010ejt.2_Silent_p.S207S	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	207	Potential.|EF-hand-like.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				GGCACGTGTCCATCTTCGAGT	0.463			M		AML								30	77					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45297465	45297465	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45297465C>T	uc002ozs.2	+	9	1352	c.1289C>T	c.(1288-1290)CCC>CTC	p.P430L	CBLC_uc010ejt.2_Missense_Mutation_p.P384L	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	430					cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				CCCCAGGTGCCCCTTTCGGCT	0.612			M		AML								40	204					0	0	1	0	0
BCAM	4059	broad.mit.edu	37	19	45322051	45322051	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45322051C>T	uc002ozu.2	+	10	1292	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F	BCAM_uc002ozt.1_Silent_p.F416F	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	416	Extracellular (Potential).|Ig-like C2-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				CTATCACCTTCGATTCCAATG	0.627													54	96					0	0	1	0	0
BCAM	4059	broad.mit.edu	37	19	45322706	45322706	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45322706A>G	uc002ozu.2	+	12	1621	c.1577A>G	c.(1576-1578)AAC>AGC	p.N526S	BCAM_uc002ozt.1_Missense_Mutation_p.N526S	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	526	Extracellular (Potential).|Ig-like C2-type 3.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GAAGCCTCCAACCCCCACGGG	0.647													28	71					0	0	1	0	0
PVRL2	5819	broad.mit.edu	37	19	45375207	45375207	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45375207C>T	uc002ozw.1	+	3	966	c.576C>T	c.(574-576)GCC>GCT	p.A192A	PVRL2_uc002ozv.2_Silent_p.A192A	NM_001042724	NP_001036189	Q92692	PVRL2_HUMAN	poliovirus receptor related 2 isoform delta	192	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|adhesion to symbiont|cell junction assembly|homophilic cell adhesion|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity|viral envelope fusion with host membrane|virion attachment, binding of host cell surface coreceptor	cell surface|integral to membrane|zonula adherens	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0	Lung NSC(12;0.00195)|all_lung(12;0.00522)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0143)		GCCCACCTGCCCGGATCTCCT	0.622													14	30					0	0	1	0	0
APOC4	346	broad.mit.edu	37	19	45448094	45448094	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45448094G>A	uc002pag.1	+	2	205	c.165G>A	c.(163-165)AAG>AAA	p.K55K	APOC2_uc002pah.2_5'Flank	NM_001646	NP_001637	P55056	APOC4_HUMAN	apolipoprotein C-IV precursor	55					lipid metabolic process|positive regulation of sequestering of triglyceride|triglyceride homeostasis	high-density lipoprotein particle|very-low-density lipoprotein particle	lipid transporter activity			breast(1)	1	Lung NSC(12;0.00858)|all_lung(12;0.0197)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00334)|Epithelial(262;0.178)		GCAGGATGAAGGAGCTGCTGG	0.572													10	6					0	0	1	0	0
RELB	5971	broad.mit.edu	37	19	45537767	45537767	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45537767C>T	uc002paj.1	+	12	1461	c.1335C>T	c.(1333-1335)TTC>TTT	p.F445F		NM_006509	NP_006500	Q01201	RELB_HUMAN	reticuloendotheliosis viral oncogene homolog B	445						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00986)		TGGACCACTTCCTGCCCAACC	0.622													5	11					0	0	1	0	0
RELB	5971	broad.mit.edu	37	19	45540982	45540982	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45540982C>T	uc002paj.1	+	13	1800	c.1674C>T	c.(1672-1674)TTC>TTT	p.F558F	SFRS16_uc002pak.2_5'Flank|SFRS16_uc002pal.2_5'Flank|SFRS16_uc010xxh.1_5'Flank|SFRS16_uc002pam.2_5'Flank|SFRS16_uc002pan.1_5'Flank	NM_006509	NP_006500	Q01201	RELB_HUMAN	reticuloendotheliosis viral oncogene homolog B	558						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00986)		GCAACATGTTCCCCAATCATT	0.697													5	27					0	0	1	0	0
SFRS16	11129	broad.mit.edu	37	19	45563679	45563679	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45563679C>T	uc002pak.2	+	9	841	c.743C>T	c.(742-744)GCC>GTC	p.A248V	SFRS16_uc002pal.2_RNA|SFRS16_uc010xxh.1_Missense_Mutation_p.A186V|SFRS16_uc002pam.2_Missense_Mutation_p.A248V|SFRS16_uc002pan.1_RNA	NM_007056	NP_008987	Q8N2M8	CLASR_HUMAN	splicing factor, arginine/serine-rich 16	248					mRNA processing|RNA splicing	nucleus					0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GAGGCAGAGGCCATCAAGCAT	0.592													22	65					0	0	1	0	0
SFRS16	11129	broad.mit.edu	37	19	45572499	45572499	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45572499C>T	uc002pak.2	+	18	1965	c.1867C>T	c.(1867-1869)CGC>TGC	p.R623C	SFRS16_uc002pal.2_RNA|SFRS16_uc010xxh.1_Missense_Mutation_p.R561C|SFRS16_uc002pam.2_Missense_Mutation_p.R604C	NM_007056	NP_008987	Q8N2M8	CLASR_HUMAN	splicing factor, arginine/serine-rich 16	623	Potential.|Arg-rich.				mRNA processing|RNA splicing	nucleus					0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCGCAAGATCCGCATGAAGTA	0.667													11	48					0	0	1	0	0
ZNF296	162979	broad.mit.edu	37	19	45579435	45579435	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45579435G>A	uc002pao.2	-	1	254	c.197C>T	c.(196-198)CCC>CTC	p.P66L		NM_145288	NP_660331	Q8WUU4	ZN296_HUMAN	zinc finger protein 296	66					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGAGTGGTGGGGTTCGCCGCC	0.741													3	17					0	0	1	0	0
GEMIN7	79760	broad.mit.edu	37	19	45593555	45593555	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45593555C>T	uc002pap.1	+	3	334	c.183C>T	c.(181-183)GCC>GCT	p.A61A	uc002pas.2_5'Flank|GEMIN7_uc002paq.1_Silent_p.A61A|GEMIN7_uc002par.1_Silent_p.A61A	NM_001007270	NP_001007271	Q9H840	GEMI7_HUMAN	gemin 7	61					ncRNA metabolic process|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding			ovary(1)	1		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0131)		CACGAGCCGCCCTTCGGGAGC	0.627													8	44					0	0	1	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45728116	45728116	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45728116C>T	uc002pay.1	-	6	501	c.460G>A	c.(460-462)GAA>AAA	p.E154K		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	154										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		GCAGATGCTTCCCGGGCCGGC	0.652													7	17					0	0	1	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45731469	45731469	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45731469C>T	uc002pay.1	-	3	187	c.146G>A	c.(145-147)GGG>GAG	p.G49E		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	49										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		CTCCAGGCTCCCCCAGTGCTC	0.667													49	109					0	0	1	0	0
ERCC2	2068	broad.mit.edu	37	19	45867734	45867734	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45867734G>A	uc002pbj.2	-	8	713	c.666C>T	c.(664-666)TCC>TCT	p.S222S	ERCC2_uc002pbi.2_5'Flank|ERCC2_uc010ejz.2_Silent_p.S144S|ERCC2_uc002pbk.2_Silent_p.S198S|ERCC2_uc002pbl.3_Silent_p.S198S|ERCC2_uc010xxj.1_Intron	NM_000400	NP_000391	P18074	ERCC2_HUMAN	excision repair cross-complementing rodent	222	Helicase ATP-binding.				cell cycle checkpoint|chromosome segregation|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|UV protection|viral reproduction	cytoplasm|holo TFIIH complex|MMXD complex	5'-3' DNA helicase activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding|protein C-terminus binding|protein N-terminus binding			lung(2)|pancreas(1)	3		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0226)		CCAGTTCCTTGGACACCAGGT	0.627			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				7	33					0	0	1	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45895188	45895188	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:45895188G>A	uc002pbn.2	-	8	1842	c.1765C>T	c.(1765-1767)CCA>TCA	p.P589S	PPP1R13L_uc002pbm.2_Missense_Mutation_p.P168S|PPP1R13L_uc002pbo.2_Missense_Mutation_p.P589S	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	589	Pro-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		GCCGGGGGTGGAATGGGAGCT	0.667													21	34					0	0	1	0	0
GPR4	2828	broad.mit.edu	37	19	46094037	46094037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46094037C>T	uc002pcm.2	-	2	2033	c.1088G>A	c.(1087-1089)TGA>TAA	p.*363*	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	363						integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		ACTCGGGGTTCATTGTGCTGG	0.577													22	46					0	0	1	0	0
GPR4	2828	broad.mit.edu	37	19	46094150	46094150	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46094150G>A	uc002pcm.2	-	2	1920	c.975C>T	c.(973-975)ACC>ACT	p.T325T	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	325	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		AGGTGAGTGGGGTCTCCAGGG	0.662													11	93					0	0	1	0	0
GPR4	2828	broad.mit.edu	37	19	46094342	46094342	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46094342C>T	uc002pcm.2	-	2	1728	c.783G>A	c.(781-783)GAG>GAA	p.E261E	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	261	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		AGACGCGCTCCTCGAAGCCGC	0.637													8	57					0	0	1	0	0
GPR4	2828	broad.mit.edu	37	19	46094548	46094548	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46094548G>A	uc002pcm.2	-	2	1522	c.577C>T	c.(577-579)CCG>TCG	p.P193S	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	193	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		AGCGCCCACGGGAAGAGGAAG	0.642													15	62					0	0	1	0	0
GIPR	2696	broad.mit.edu	37	19	46177384	46177384	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46177384C>T	uc002pcu.1	+	6	536	c.437C>T	c.(436-438)TCC>TTC	p.S146F	GIPR_uc002pct.1_Missense_Mutation_p.S146F|GIPR_uc010xxp.1_Missense_Mutation_p.S110F|GIPR_uc010xxq.1_RNA|MIR642_hsa-mir-642|MI0003657_5'Flank	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	146	Helical; Name=1; (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		GTCGGCTACTCCCTGTCTCTC	0.592													64	178					0	0	1	0	0
GIPR	2696	broad.mit.edu	37	19	46181175	46181175	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46181175C>T	uc002pcu.1	+	11	1035	c.936C>T	c.(934-936)CTC>CTT	p.L312L	GIPR_uc002pct.1_Silent_p.L312L|GIPR_uc010xxp.1_Silent_p.L276L|GIPR_uc010xxq.1_RNA	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	312	Helical; Name=5; (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		TTAATTTCCTCATTTTTATCC	0.567													22	81					0	0	1	0	0
RSPH6A	81492	broad.mit.edu	37	19	46299162	46299162	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46299162C>T	uc002pdm.2	-	6	2262	c.2119G>A	c.(2119-2121)GAG>AAG	p.E707K	RSPH6A_uc002pdl.2_Missense_Mutation_p.E443K	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	707	Glu-rich.					intracellular				ovary(1)|central_nervous_system(1)	2						tcctcctcctcgccctcctcc	0.428													55	86					0	0	1	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307697	46307697	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46307697G>A	uc002pdm.2	-	3	1609	c.1466C>T	c.(1465-1467)TCG>TTG	p.S489L	RSPH6A_uc002pdl.2_Missense_Mutation_p.S225L	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	489						intracellular				ovary(1)|central_nervous_system(1)	2						CGTGGCGGCCGAGATGCGGGC	0.642													23	52					0	0	1	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307838	46307838	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46307838G>A	uc002pdm.2	-	3	1468	c.1325C>T	c.(1324-1326)CCC>CTC	p.P442L	RSPH6A_uc002pdl.2_Missense_Mutation_p.P178L	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	442						intracellular				ovary(1)|central_nervous_system(1)	2						AGTGACGTGGGGCAGCCGCGT	0.632													18	66					0	0	1	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307866	46307866	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46307866C>T	uc002pdm.2	-	3	1440	c.1297G>A	c.(1297-1299)GAG>AAG	p.E433K	RSPH6A_uc002pdl.2_Missense_Mutation_p.E169K	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	433						intracellular				ovary(1)|central_nervous_system(1)	2						AGGCCCGGCTCGTTGCACACA	0.617													20	55					0	0	1	0	0
RSPH6A	81492	broad.mit.edu	37	19	46308052	46308052	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46308052C>T	uc002pdm.2	-	3	1254	c.1111G>A	c.(1111-1113)GAG>AAG	p.E371K	RSPH6A_uc002pdl.2_Missense_Mutation_p.E107K	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	371	Glu-rich.					intracellular				ovary(1)|central_nervous_system(1)	2						acctcctcctcctctgcctcc	0.353													7	22					0	0	1	0	0
RSPH6A	81492	broad.mit.edu	37	19	46308272	46308272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46308272C>T	uc002pdm.2	-	3	1034	c.891G>A	c.(889-891)GGG>GGA	p.G297G	RSPH6A_uc002pdl.2_Silent_p.G33G	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	297						intracellular				ovary(1)|central_nervous_system(1)	2						CTGGTGTCTCCCCCTGCGCAG	0.582													8	55					0	0	1	0	0
SYMPK	8189	broad.mit.edu	37	19	46318912	46318912	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46318912G>A	uc002pdn.2	-	27	3976	c.3731C>T	c.(3730-3732)CCC>CTC	p.P1244L	RSPH6A_uc002pdm.2_5'Flank	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	1244					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		GAGGGTCTGGGGGCTCCGCTC	0.692													5	17					0	0	1	0	0
SYMPK	8189	broad.mit.edu	37	19	46328540	46328540	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46328540G>A	uc002pdn.2	-	18	2624	c.2379C>T	c.(2377-2379)CTC>CTT	p.L793L	SYMPK_uc002pdo.1_Silent_p.L793L|SYMPK_uc002pdp.1_Silent_p.L793L	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	793					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		GGGCCAGGTAGAGGTACAGAC	0.612													12	44					0	0	1	0	0
SYMPK	8189	broad.mit.edu	37	19	46332449	46332449	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46332449G>A	uc002pdn.2	-	14	2009	c.1764C>T	c.(1762-1764)ATC>ATT	p.I588I	SYMPK_uc002pdo.1_Silent_p.I588I|SYMPK_uc002pdp.1_Silent_p.I588I	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	588					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		GGCTGGCCAGGATCTTTATGC	0.632													20	49					0	0	1	0	0
SYMPK	8189	broad.mit.edu	37	19	46338424	46338424	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46338424G>A	uc002pdn.2	-	11	1550	c.1305C>T	c.(1303-1305)ACC>ACT	p.T435T	SYMPK_uc002pdo.1_Silent_p.T435T|SYMPK_uc002pdp.1_Silent_p.T435T|SYMPK_uc002pdq.1_Silent_p.T435T	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	435					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		ACTCCACGGGGGTGTAGATGG	0.602													23	83					0	0	1	0	0
FOXA3	3171	broad.mit.edu	37	19	46375450	46375450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46375450G>A	uc002pdr.2	+	2	384	c.187G>A	c.(187-189)GGA>AGA	p.G63R		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	63					brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		ACTGCCCTCAGGACCCCTGGC	0.706													20	53					0	0	1	0	0
FOXA3	3171	broad.mit.edu	37	19	46375487	46375487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46375487G>A	uc002pdr.2	+	2	421	c.224G>A	c.(223-225)GGG>GAG	p.G75E		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	75					brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		GCCCCCCTGGGGCCCACTTTC	0.711													11	42					0	0	1	0	0
FOXA3	3171	broad.mit.edu	37	19	46376127	46376127	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46376127C>T	uc002pdr.2	+	2	1061	c.864C>T	c.(862-864)CTC>CTT	p.L288L		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	288					brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		GCCTGGAGCTCCCAGGGGAGC	0.607													22	37					0	0	1	0	0
IRF2BP1	26145	broad.mit.edu	37	19	46387758	46387758	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46387758G>A	uc002pds.1	-	1	1619	c.1275C>T	c.(1273-1275)GCC>GCT	p.A425A		NM_015649	NP_056464	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein	425					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		CATTCTTCAGGGCGGCAATGG	0.711													14	37					0	0	1	0	0
IRF2BP1	26145	broad.mit.edu	37	19	46387882	46387882	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46387882G>A	uc002pds.1	-	1	1495	c.1151C>T	c.(1150-1152)TCC>TTC	p.S384F		NM_015649	NP_056464	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein	384					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		CGGCTCGGGGGATGCCTTGCG	0.746													5	29					0	0	1	0	0
IGFL3	388555	broad.mit.edu	37	19	46627344	46627344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46627344G>A	uc002pea.1	-	3	174	c.149C>T	c.(148-150)CCT>CTT	p.P50L		NM_207393	NP_997276	Q6UXB1	IGFL3_HUMAN	IGF-like family member 3 precursor	50						extracellular region	protein binding				0		Ovarian(192;0.0175)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00473)|GBM - Glioblastoma multiforme(486;0.0149)|Epithelial(262;0.239)		CTGCTCTGAAGGGTTGTAGAT	0.557													44	104					0	0	1	0	0
IGFL2	147920	broad.mit.edu	37	19	46663672	46663672	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46663672C>T	uc010xxv.1	+	2	56	c.20C>T	c.(19-21)GCT>GTT	p.A7V	IGFL2_uc002peb.2_Missense_Mutation_p.A18V	NM_001135113	NP_001128585	Q6UWQ7	IGFL2_HUMAN	IGF-like family member 2 isoform b	7						extracellular region	protein binding				0		Ovarian(192;0.0908)|all_neural(266;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(486;0.031)|Epithelial(262;0.247)		TCTCTCCCAGCTCCTGCTTAT	0.542													5	18					0	0	1	0	0
IGFL1	374918	broad.mit.edu	37	19	46733686	46733686	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46733686G>A	uc002pee.2	+	3	258	c.235G>A	c.(235-237)GAG>AAG	p.E79K		NM_198541	NP_940943	Q6UW32	IGFL1_HUMAN	IGF-like family member 1 precursor	79						extracellular space	protein binding				0		Ovarian(192;0.0731)|all_neural(266;0.196)		OV - Ovarian serous cystadenocarcinoma(262;0.00242)|all cancers(93;0.0132)|GBM - Glioblastoma multiforme(486;0.0294)|Epithelial(262;0.201)		AGTCTGCTTTGAGCAGTGCTG	0.572													32	125					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46825075	46825075	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46825075C>T	uc002peh.2	+	10	1216	c.1187C>T	c.(1186-1188)TCC>TTC	p.S396F	HIF3A_uc002peg.3_Missense_Mutation_p.S396F|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Missense_Mutation_p.S340F|HIF3A_uc002pej.1_Missense_Mutation_p.S327F|HIF3A_uc002pek.2_Missense_Mutation_p.S340F|HIF3A_uc010xxy.1_Missense_Mutation_p.S327F|HIF3A_uc002pel.2_Missense_Mutation_p.S394F|HIF3A_uc010xxz.1_Missense_Mutation_p.S345F	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	396					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CACCCGCCTTCCCTGAGCGAG	0.687													21	101					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46825081	46825081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46825081G>A	uc002peh.2	+	10	1222	c.1193G>A	c.(1192-1194)AGC>AAC	p.S398N	HIF3A_uc002peg.3_Missense_Mutation_p.S398N|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Missense_Mutation_p.S342N|HIF3A_uc002pej.1_Missense_Mutation_p.S329N|HIF3A_uc002pek.2_Missense_Mutation_p.S342N|HIF3A_uc010xxy.1_Missense_Mutation_p.S329N|HIF3A_uc002pel.2_Missense_Mutation_p.S396N|HIF3A_uc010xxz.1_Missense_Mutation_p.S347N	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	398					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CCTTCCCTGAGCGAGGCTGCC	0.682													21	93					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46832474	46832474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46832474C>T	uc002peh.2	+	12	1480	c.1451C>T	c.(1450-1452)GCT>GTT	p.A484V	HIF3A_uc002peg.3_Missense_Mutation_p.A484V|HIF3A_uc002pei.3_Missense_Mutation_p.A428V|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Missense_Mutation_p.A428V|HIF3A_uc010xxy.1_Missense_Mutation_p.A415V|HIF3A_uc002pel.2_Missense_Mutation_p.A482V|HIF3A_uc010xxz.1_Missense_Mutation_p.A433V	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	484	NTAD.|ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		GATGCTGATGCTCTGGATTTG	0.393													32	76					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46832585	46832585	+	Missense_Mutation	SNP	G	A	A	rs145401391		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46832585G>A	uc002peh.2	+	12	1591	c.1562G>A	c.(1561-1563)CGG>CAG	p.R521Q	HIF3A_uc002peg.3_Missense_Mutation_p.R521Q|HIF3A_uc002pei.3_Missense_Mutation_p.R465Q|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Missense_Mutation_p.R465Q|HIF3A_uc010xxy.1_Missense_Mutation_p.R452Q|HIF3A_uc002pel.2_Missense_Mutation_p.R519Q|HIF3A_uc010xxz.1_Missense_Mutation_p.R470Q	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	521	ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		GCTGTCCCCCGGCCCCGTGCT	0.672													25	62					0	0	1	0	0
CCDC8	83987	broad.mit.edu	37	19	46914895	46914895	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46914895C>T	uc002pep.2	-	1	2025	c.1173G>A	c.(1171-1173)CAG>CAA	p.Q391Q		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	391						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		CCTCCGCCCTCTGATTATCTG	0.587													39	190					0	0	1	0	0
CCDC8	83987	broad.mit.edu	37	19	46914910	46914910	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46914910C>T	uc002pep.2	-	1	2010	c.1158G>A	c.(1156-1158)GAG>GAA	p.E386E		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	386						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		TATCTGCAGCCTCTTCCCTGT	0.577													20	237					0	0	1	0	0
CCDC8	83987	broad.mit.edu	37	19	46915173	46915173	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46915173C>T	uc002pep.2	-	1	1747	c.895G>A	c.(895-897)GCT>ACT	p.A299T		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	299						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		CTATCTGCAGCCTCTCCCCCC	0.647													71	153					0	0	1	0	0
CCDC8	83987	broad.mit.edu	37	19	46915457	46915458	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46915457_46915458CC>TT	uc002pep.2	-	1	1462_1463	c.610_611GG>AA	c.(610-612)GGG>AAG	p.G204K		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	204						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		CTTCAGCTTCCCCCAGGACACC	0.693													14	20					0	0	1	0	0
CCDC8	83987	broad.mit.edu	37	19	46916019	46916020	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46916019_46916020CC>TT	uc002pep.2	-	1	900_901	c.48_49GG>AA	c.(46-51)GAGGTC>GAAATC	p.V17I		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	17						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		gccagcctgacctcccggggga	0													8	59					0	0	1	0	0
CCDC8	83987	broad.mit.edu	37	19	46916050	46916050	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46916050C>T	uc002pep.2	-	1	870	c.18G>A	c.(16-18)GAG>GAA	p.E6E		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	6						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		agtcgacgtcctccccgatct	0.05													8	46					0	0	1	0	0
PNMAL2	57469	broad.mit.edu	37	19	46997547	46997547	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46997547C>T	uc002pes.2	-	1	1623	c.1176G>A	c.(1174-1176)GAG>GAA	p.E392E	uc002peu.1_5'Flank	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	392										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		CGCGGCCCGCCTCTTCCACCT	0.672													6	30					0	0	1	0	0
PNMAL2	57469	broad.mit.edu	37	19	46997813	46997813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:46997813C>T	uc002pes.2	-	1	1357	c.910G>A	c.(910-912)GAG>AAG	p.E304K	uc002peu.1_5'UTR	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	304										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		ACCGGCTCCTCGTCCGGGGTG	0.582													13	112					0	0	1	0	0
PTGIR	5739	broad.mit.edu	37	19	47124807	47124807	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47124807C>T	uc002pex.2	-	3	1004	c.891G>A	c.(889-891)AAG>AAA	p.K297K		NM_000960	NP_000951	P43119	PI2R_HUMAN	prostaglandin I2 (prostacyclin) receptor (IP)	297	Cytoplasmic (Potential).				cell-cell signaling|G-protein signaling, coupled to cyclic nucleotide second messenger|platelet activation	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000327)|all cancers(93;0.000641)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0331)	Dinoprost Tromethamine(DB01160)|Dinoprostone(DB00917)|Epoprostenol(DB01240)|Iloprost(DB01088)|Misoprostol(DB00929)	GGAAGACAGCCTTGCGGAAAA	0.632													7	81					0	0	1	0	0
PTGIR	5739	broad.mit.edu	37	19	47124812	47124812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47124812G>A	uc002pex.2	-	3	999	c.886C>T	c.(886-888)CGC>TGC	p.R296C		NM_000960	NP_000951	P43119	PI2R_HUMAN	prostaglandin I2 (prostacyclin) receptor (IP)	296	Cytoplasmic (Potential).				cell-cell signaling|G-protein signaling, coupled to cyclic nucleotide second messenger|platelet activation	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000327)|all cancers(93;0.000641)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0331)	Dinoprost Tromethamine(DB01160)|Dinoprostone(DB00917)|Epoprostenol(DB01240)|Iloprost(DB01088)|Misoprostol(DB00929)	ACAGCCTTGCGGAAAAGGATG	0.637													22	64					0	0	1	0	0
PTGIR	5739	broad.mit.edu	37	19	47127184	47127184	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47127184G>A	uc002pex.2	-	2	412	c.299C>T	c.(298-300)ACC>ATC	p.T100I		NM_000960	NP_000951	P43119	PI2R_HUMAN	prostaglandin I2 (prostacyclin) receptor (IP)	100	Helical; Name=3; (Potential).				cell-cell signaling|G-protein signaling, coupled to cyclic nucleotide second messenger|platelet activation	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000327)|all cancers(93;0.000641)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0331)	Dinoprost Tromethamine(DB01160)|Dinoprostone(DB00917)|Epoprostenol(DB01240)|Iloprost(DB01088)|Misoprostol(DB00929)	GCCGAAGAAGGTCATGGCGAA	0.701													4	11					0	0	1	0	0
DACT3	147906	broad.mit.edu	37	19	47151774	47151774	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47151774G>A	uc010ekq.2	-	4	1929	c.1855C>T	c.(1855-1857)CGT>TGT	p.R619C		NM_145056	NP_659493	Q96B18	DACT3_HUMAN	thymus expressed gene 3-like	619											0		Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000173)|all cancers(93;0.000464)|Epithelial(262;0.02)|GBM - Glioblastoma multiforme(486;0.0325)		GAACCCGAACGGAAACGCAGT	0.577													138	384					0	0	1	0	0
PRKD2	25865	broad.mit.edu	37	19	47200991	47200991	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47200991A>G	uc002pfh.2	-	9	1580	c.1238T>C	c.(1237-1239)CTG>CCG	p.L413P	PRKD2_uc002pfe.2_5'Flank|PRKD2_uc002pff.2_5'Flank|PRKD2_uc002pfg.2_Missense_Mutation_p.L256P|PRKD2_uc002pfi.2_Missense_Mutation_p.L413P|PRKD2_uc002pfj.2_Missense_Mutation_p.L413P|PRKD2_uc010xye.1_Missense_Mutation_p.L413P|PRKD2_uc002pfk.2_Missense_Mutation_p.L256P	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	413	PH.				cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		gccACTCACCAGCGTGTCCTT	0.318													37	89					0	0	1	0	0
STRN4	29888	broad.mit.edu	37	19	47225277	47225277	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47225277G>A	uc002pfl.2	-	16	2091	c.2058C>T	c.(2056-2058)GCC>GCT	p.A686A	STRN4_uc002pfm.2_Silent_p.A693A|STRN4_uc010xyf.1_RNA	NM_013403	NP_037535	Q9NRL3	STRN4_HUMAN	zinedin isoform 1	686	WD 6.					cytoplasm|membrane	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000563)|all cancers(93;0.00138)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.035)		TGGGGTCCACGGCTAGGCAGG	0.632													34	70					0	0	1	0	0
STRN4	29888	broad.mit.edu	37	19	47228830	47228830	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47228830G>A	uc002pfl.2	-	10	1357	c.1324C>T	c.(1324-1326)CGT>TGT	p.R442C	STRN4_uc002pfm.2_Missense_Mutation_p.R449C|STRN4_uc010xyf.1_RNA|STRN4_uc010xyg.1_RNA	NM_013403	NP_037535	Q9NRL3	STRN4_HUMAN	zinedin isoform 1	442	WD 1.					cytoplasm|membrane	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000563)|all cancers(93;0.00138)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.035)		GCCAGGGAACGAATGCCGTCG	0.612													13	44					0	0	1	0	0
STRN4	29888	broad.mit.edu	37	19	47228866	47228866	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47228866G>A	uc002pfl.2	-	10	1321	c.1288C>T	c.(1288-1290)CCC>TCC	p.P430S	STRN4_uc002pfm.2_Missense_Mutation_p.P437S|STRN4_uc010xyf.1_RNA|STRN4_uc010xyg.1_RNA	NM_013403	NP_037535	Q9NRL3	STRN4_HUMAN	zinedin isoform 1	430						cytoplasm|membrane	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000563)|all cancers(93;0.00138)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.035)		GTGAACTTGGGGTTCCACGTC	0.602													14	39					0	0	1	0	0
FKRP	79147	broad.mit.edu	37	19	47258815	47258815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47258815C>T	uc002pfn.2	+	4	405	c.108C>T	c.(106-108)GCC>GCT	p.A36A	FKRP_uc002pfp.2_Silent_p.A36A	NM_024301	NP_077277	Q9H9S5	FKRP_HUMAN	fukutin-related protein	36						extracellular space|Golgi apparatus|rough endoplasmic reticulum|sarcolemma	transferase activity			pancreas(1)	1		all_epithelial(76;5.08e-05)|Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000541)|all cancers(93;0.00128)|Epithelial(262;0.0207)|GBM - Glioblastoma multiforme(486;0.0336)		ATTCCCGGGCCCGGGGGCCCC	0.677													3	16					0	0	1	0	0
GRLF1	2909	broad.mit.edu	37	19	47423267	47423267	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47423267C>T	uc010ekv.2	+	1	1335	c.1335C>T	c.(1333-1335)TTC>TTT	p.F445F		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	445	FF 3.				axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		CTTCTCCTTTCATAACTCCCG	0.453													7	74					0	0	1	0	0
ZC3H4	23211	broad.mit.edu	37	19	47569694	47569694	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47569694G>A	uc002pga.3	-	15	3869	c.3831C>T	c.(3829-3831)GCC>GCT	p.A1277A	ZC3H4_uc002pgb.1_RNA	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	1277							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		CACCCTCGCGGGCCGGACTGT	0.637													5	1					0	0	1	0	0
ZC3H4	23211	broad.mit.edu	37	19	47571021	47571021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47571021G>A	uc002pga.3	-	15	2542	c.2504C>T	c.(2503-2505)TCA>TTA	p.S835L	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	835							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		CTCCCCAACTGAAGCCGGGGG	0.652													3	13					0	0	1	0	0
DHX34	9704	broad.mit.edu	37	19	47858339	47858339	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47858339C>T	uc010xyn.1	+	3	1090	c.749C>T	c.(748-750)ACC>ATC	p.T250I	DHX34_uc010elc.1_Missense_Mutation_p.T250I	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	250	Helicase ATP-binding.					intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		TCGGCGGCCACCAAGATTGTA	0.587													17	94					0	0	1	0	0
SLC8A2	6543	broad.mit.edu	37	19	47941126	47941126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47941126C>T	uc002pgx.2	-	7	2268	c.1990G>A	c.(1990-1992)GAG>AAG	p.E664K	SLC8A2_uc010xyq.1_Missense_Mutation_p.E420K|SLC8A2_uc010xyr.1_Missense_Mutation_p.E127K|SLC8A2_uc010ele.2_Missense_Mutation_p.E664K	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	664	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		TATGACTCCTCGATGATGACC	0.577													45	92					0	0	1	0	0
SLC8A2	6543	broad.mit.edu	37	19	47941136	47941136	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47941136C>T	uc002pgx.2	-	7	2258	c.1980G>A	c.(1978-1980)GAG>GAA	p.E660E	SLC8A2_uc010xyq.1_Silent_p.E416E|SLC8A2_uc010xyr.1_Silent_p.E123E|SLC8A2_uc010ele.2_Silent_p.E660E	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	660	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CGATGATGACCTCCAGCCGGC	0.577													36	98					0	0	1	0	0
SLC8A2	6543	broad.mit.edu	37	19	47944643	47944643	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47944643A>T	uc002pgx.2	-	5	2096	c.1818T>A	c.(1816-1818)AAT>AAA	p.N606K	SLC8A2_uc010xyq.1_Missense_Mutation_p.N362K|SLC8A2_uc010xyr.1_Missense_Mutation_p.N69K|SLC8A2_uc010ele.2_Missense_Mutation_p.N606K	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	606	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CAATGAAGAAATTATCCTTTT	0.388													23	44					0	0	1	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969464	47969464	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47969464C>T	uc002pgx.2	-	2	475	c.197G>A	c.(196-198)GGT>GAT	p.G66D	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Missense_Mutation_p.G66D	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	66	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CGCCTTGTCACCCAGCGACGG	0.657													14	48					0	0	1	0	0
KPTN	11133	broad.mit.edu	37	19	47986450	47986450	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:47986450G>A	uc002pgy.2	-	4	521	c.417C>T	c.(415-417)CTC>CTT	p.L139L	KPTN_uc010xys.1_RNA|uc002pgz.1_5'Flank	NM_007059	NP_008990	Q9Y664	KPTN_HUMAN	kaptin (actin binding protein)	139					actin filament organization|cellular component movement|sensory perception of sound	actin cytoskeleton|growth cone|microtubule organizing center|nucleus|perinuclear region of cytoplasm|stereocilium	actin binding			ovary(1)	1		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000428)|all cancers(93;0.000631)|Epithelial(262;0.0153)|GBM - Glioblastoma multiforme(486;0.0694)		GAGTGAACTGGAGCTCCAGGT	0.612													81	177					0	0	1	0	0
EHD2	30846	broad.mit.edu	37	19	48220020	48220020	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48220020G>A	uc002phj.3	+	2	401	c.151G>A	c.(151-153)GAG>AAG	p.E51K	EHD2_uc010xyu.1_Intron	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	51					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		GCCGGCCCTGGAGGACGCAGA	0.662													11	25					0	0	1	0	0
EHD2	30846	broad.mit.edu	37	19	48220034	48220034	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48220034C>T	uc002phj.3	+	2	415	c.165C>T	c.(163-165)TTC>TTT	p.F55F	EHD2_uc010xyu.1_Intron	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	55					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		ACGCAGACTTCGACGGCAAGC	0.677													13	25					0	0	1	0	0
EHD2	30846	broad.mit.edu	37	19	48239742	48239742	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48239742G>A	uc002phj.3	+	5	1282	c.1032G>A	c.(1030-1032)CTG>CTA	p.L344L	EHD2_uc010xyu.1_Silent_p.L208L|EHD2_uc010xyv.1_Silent_p.L27L	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	344					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		AGATTCAGCTGGAACATCACA	0.527													36	53					0	0	1	0	0
SEPW1	6415	broad.mit.edu	37	19	48284381	48284381	+	Missense_Mutation	SNP	C	T	T	rs11551813		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48284381C>T	uc010xyw.1	+	5	326	c.125C>T	c.(124-126)CCC>CTC	p.P42L	SEPW1_uc002pho.1_5'Flank	NM_003009	NP_003000	P63302	SELW_HUMAN	selenoprotein W, 1	42					cell redox homeostasis	cytoplasm	selenium binding				0		all_cancers(25;3.02e-09)|all_epithelial(76;7e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		all cancers(93;0.000291)|OV - Ovarian serous cystadenocarcinoma(262;0.000305)|Epithelial(262;0.0146)|GBM - Glioblastoma multiforme(486;0.0273)		GAGGGAACTCCCCAGGCCACC	0.572													39	227					0	0	1	0	0
TPRX1	284355	broad.mit.edu	37	19	48305051	48305051	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48305051C>T	uc002php.1	-	2	1288	c.1217G>A	c.(1216-1218)AGG>AAG	p.R406K		NM_198479	NP_940881	Q8N7U7	TPRX1_HUMAN	tetra-peptide repeat homeobox	406						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(25;3.02e-09)|all_epithelial(76;7e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000241)|all cancers(93;0.00036)|Epithelial(262;0.0127)|GBM - Glioblastoma multiforme(486;0.048)		CAGTAATAACCTGGGGCCTGA	0.517													9	104					0	0	1	0	0
CRX	1406	broad.mit.edu	37	19	48343035	48343035	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48343035C>T	uc002phq.3	+	4	915	c.711C>T	c.(709-711)CTC>CTT	p.L237L		NM_000554	NP_000545	O43186	CRX_HUMAN	cone-rod homeobox protein	237					organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		TTAGCCCCCTCTCTGGCCCCT	0.652													23	250					0	0	1	0	0
SULT2A1	6822	broad.mit.edu	37	19	48374717	48374717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48374717C>T	uc002phr.2	-	6	993	c.853G>A	c.(853-855)GAA>AAA	p.E285K		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	285					3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		GGACGTTATTCCCATGGGAAC	0.428													22	77					0	0	1	0	0
ELSPBP1	64100	broad.mit.edu	37	19	48519169	48519169	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48519169C>T	uc002pht.2	+	4	383	c.228C>T	c.(226-228)TTC>TTT	p.F76F		NM_022142	NP_071425	Q96BH3	ESPB1_HUMAN	epididymal sperm binding protein 1 precursor	76	Fibronectin type-II 2.				single fertilization	extracellular region					0		all_cancers(25;8.7e-09)|all_lung(116;1.15e-06)|all_epithelial(76;1.17e-06)|Lung NSC(112;2.56e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000253)|all cancers(93;0.00129)|Epithelial(262;0.0314)|GBM - Glioblastoma multiforme(486;0.0606)		GCTGTATCTTCCCTTTCATCT	0.458													19	49					0	0	1	0	0
PLA2G4C	8605	broad.mit.edu	37	19	48565282	48565282	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48565282G>A	uc002phx.2	-	14	1628	c.1230C>T	c.(1228-1230)TTC>TTT	p.F410F	PLA2G4C_uc002phw.2_Silent_p.F345F|PLA2G4C_uc010elr.2_Silent_p.F410F|PLA2G4C_uc010xzd.1_Silent_p.F420F	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	410	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		CACTGAAGTCGAAGGAGAGGA	0.622													49	104					0	0	1	0	0
PLA2G4C	8605	broad.mit.edu	37	19	48565299	48565299	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48565299G>A	uc002phx.2	-	14	1611	c.1213C>T	c.(1213-1215)CAC>TAC	p.H405Y	PLA2G4C_uc002phw.2_Missense_Mutation_p.H340Y|PLA2G4C_uc010elr.2_Missense_Mutation_p.H405Y|PLA2G4C_uc010xzd.1_Missense_Mutation_p.H415Y	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	405	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		AGGATGAGGTGAACCTCCCGC	0.612													34	103					0	0	1	0	0
LIG1	3978	broad.mit.edu	37	19	48654501	48654502	+	Silent	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48654501_48654502GG>AA	uc002pia.1	-	7	681_682	c.561_562CC>TT	c.(559-564)CCCCTA>CCTTTA	p.187_188PL>PL	LIG1_uc010xze.1_5'UTR|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Intron|LIG1_uc010xzg.1_Silent_p.156_157PL>PL|LIG1_uc010xzh.1_RNA	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	187_188					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	GAGGTCTTTAGGGGCTTGGGAG	0.554								NER					40	158					0	0	1	0	0
CCDC114	93233	broad.mit.edu	37	19	48800332	48800332	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48800332C>T	uc002pir.2	-	14	2597	c.1914G>A	c.(1912-1914)TCG>TCA	p.S638S	CCDC114_uc002piq.2_Silent_p.S447S|CCDC114_uc002pio.2_3'UTR	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	638	Ser-rich.									ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		GGCCTCCGCTCGAATCAGACG	0.672													11	140					0	0	1	0	0
CCDC114	93233	broad.mit.edu	37	19	48800737	48800737	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48800737C>T	uc002pir.2	-	14	2192	c.1509G>A	c.(1507-1509)AAG>AAA	p.K503K	CCDC114_uc002piq.2_Silent_p.K312K|CCDC114_uc002pio.2_Missense_Mutation_p.R564K	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	503										ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		CGGCCAGGTCCTTCTGGCGCT	0.736													4	20					0	0	1	0	0
GRWD1	83743	broad.mit.edu	37	19	48953984	48953984	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48953984C>T	uc002pjd.2	+	5	977	c.744C>T	c.(742-744)GGC>GGT	p.G248G		NM_031485	NP_113673	Q9BQ67	GRWD1_HUMAN	glutamate-rich WD repeat containing 1	248	WD 1.					nucleolus				ovary(1)	1		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000206)|all cancers(93;0.000207)|Epithelial(262;0.0125)|GBM - Glioblastoma multiforme(486;0.0222)		CGGACGGCGGCTCCTGGCACG	0.577													12	25					0	0	1	0	0
KCNJ14	3770	broad.mit.edu	37	19	48967571	48967571	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48967571C>T	uc002pje.1	+	3	1253	c.848C>T	c.(847-849)CCT>CTT	p.P283L	KCNJ14_uc002pjf.1_Missense_Mutation_p.P283L	NM_013348	NP_037480	Q9UNX9	IRK14_HUMAN	potassium inwardly-rectifying channel J14	283	Cytoplasmic (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000109)|all cancers(93;0.000129)|Epithelial(262;0.0081)|GBM - Glioblastoma multiforme(486;0.0222)		TCTGCCAGTCCTCTGTATGAG	0.577													7	12					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49000670	49000670	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49000670C>T	uc002pjk.2	-	12	3743	c.3743G>A	c.(3742-3744)GGG>GAG	p.G1248E		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		CTCGCTGTTCCCCTGAGGGGG	0.652													22	50					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49001477	49001477	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49001477C>T	uc002pjk.2	-	12	2936	c.2936G>A	c.(2935-2937)GGG>GAG	p.G979E		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		CTCGGGGGACCCCAGGGCCCC	0.642													34	102					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49001503	49001503	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49001503C>T	uc002pjk.2	-	12	2910	c.2910G>A	c.(2908-2910)GAG>GAA	p.E970E		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		CCGCCGCCTTCTCCTCGATGC	0.642													8	94					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49001530	49001530	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49001530C>T	uc002pjk.2	-	12	2883	c.2883G>A	c.(2881-2883)GGG>GGA	p.G961G		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		CTCTCTGGTCCCCGTTCTCCA	0.642													25	52					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49006253	49006253	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49006253C>T	uc002pjk.2	-	7	645	c.645G>A	c.(643-645)AGG>AGA	p.R215R		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		GCTGCAGGCTCCTGTGGAGTG	0.582													4	28					0	0	1	0	0
SULT2B1	6820	broad.mit.edu	37	19	49055564	49055564	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49055564G>A	uc002pjl.2	+	1	136	c.55G>A	c.(55-57)GAC>AAC	p.D19N		NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	19				D->A: Increases the cholesterol sulfotransferase activity.|Missing: Loss of the cholesterol sulfotransferase activity.	3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		CTATGAAGATGACATCTCGGA	0.672													8	25					0	0	1	0	0
FAM83E	54854	broad.mit.edu	37	19	49107064	49107064	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49107064G>A	uc002pjn.2	-	4	928	c.863C>T	c.(862-864)TCC>TTC	p.S288F	SPACA4_uc002pjo.2_5'Flank	NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	288										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GAGCGGGCAGGAGGCCGCGTA	0.701													13	31					0	0	1	0	0
RPL18	6141	broad.mit.edu	37	19	49119388	49119388	+	Silent	SNP	G	A	A	rs138053229	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49119388G>A	uc002pjq.1	-	5	402	c.369C>T	c.(367-369)TTC>TTT	p.F123F	FAM83E_uc002pjn.2_5'Flank|RPL18_uc002pjp.1_Silent_p.F71F|RPL18_uc010xzs.1_3'UTR	NM_000979	NP_000970	Q07020	RL18_HUMAN	ribosomal protein L18	123					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.89e-05)|all cancers(93;0.00011)|GBM - Glioblastoma multiforme(486;0.0061)|Epithelial(262;0.0154)		CCAGCTGGTCGAAAGTGAGGA	0.642													20	54					0	0	1	0	0
RPL18	6141	broad.mit.edu	37	19	49120585	49120585	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49120585G>A	uc002pjq.1	-	3	219	c.186C>T	c.(184-186)TCC>TCT	p.S62S	RPL18_uc002pjp.1_Silent_p.S10S|RPL18_uc010xzs.1_Silent_p.S62S|SPHK2_uc002pjr.2_5'Flank|SPHK2_uc010xzt.1_5'Flank|SPHK2_uc002pjs.2_5'Flank	NM_000979	NP_000970	Q07020	RL18_HUMAN	ribosomal protein L18	62				S -> C (in Ref. 3; AAH21743).	endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.89e-05)|all cancers(93;0.00011)|GBM - Glioblastoma multiforme(486;0.0061)|Epithelial(262;0.0154)		TCCGGGAAAGGGACAGAGGCG	0.562													56	167					0	0	1	0	0
NTN5	126147	broad.mit.edu	37	19	49167855	49167855	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49167855G>A	uc002pkb.2	-	3	897	c.801C>T	c.(799-801)TTC>TTT	p.F267F	SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Silent_p.F267F	NM_145807	NP_665806	Q8WTR8	NET5_HUMAN	netrin 5 precursor	267	Laminin EGF-like 2.					extracellular region				large_intestine(1)|pancreas(1)	2						CCCTGCGGCTGAAGATAGGCT	0.453													9	39					0	0	1	0	0
SEC1	653677	broad.mit.edu	37	19	49183689	49183689	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49183689C>T	uc010xzv.1	+	5	836	c.709C>T	c.(709-711)CCG>TCG	p.P237S	SEC1_uc002pka.2_Missense_Mutation_p.P197S|SEC1_uc010xzw.1_Missense_Mutation_p.P154S|SEC1_uc010ema.2_Missense_Mutation_p.P143S	NR_004401				SubName: Full=cDNA FLJ58287, highly similar to Galactoside 2-alpha-L-fucosyltransferase 2 (EC 2.4.1.69);												0						CCGCCACATCCCGGGGCGCTG	0.652													13	36					0	0	1	0	0
SEC1	653677	broad.mit.edu	37	19	49183691	49183691	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49183691G>A	uc010xzv.1	+	5	838	c.711G>A	c.(709-711)CCG>CCA	p.P237P	SEC1_uc002pka.2_Silent_p.P197P|SEC1_uc010xzw.1_Silent_p.P154P|SEC1_uc010ema.2_Silent_p.P143P	NR_004401				SubName: Full=cDNA FLJ58287, highly similar to Galactoside 2-alpha-L-fucosyltransferase 2 (EC 2.4.1.69);												0						GCCACATCCCGGGGCGCTGTG	0.657													18	31					0	0	1	0	0
SEC1	653677	broad.mit.edu	37	19	49183940	49183940	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49183940G>A	uc010xzv.1	+	5	1087	c.960G>A	c.(958-960)GCG>GCA	p.A320A	SEC1_uc002pka.2_Silent_p.A280A|SEC1_uc010xzw.1_Silent_p.A237A|SEC1_uc010ema.2_Silent_p.A226A	NR_004401				SubName: Full=cDNA FLJ58287, highly similar to Galactoside 2-alpha-L-fucosyltransferase 2 (EC 2.4.1.69);												0						TACCTGCAGCGGGCCCTGGAC	0.692													3	3					0	0	1	0	0
FUT2	2524	broad.mit.edu	37	19	49206576	49206576	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49206576G>A	uc002pke.3	+	2	474	c.363G>A	c.(361-363)AGG>AGA	p.R121R	FUT2_uc010emc.2_Silent_p.R121R	NM_001097638	NP_001091107	Q10981	FUT2_HUMAN	fucosyltransferase 2	121	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	galactoside 2-alpha-L-fucosyltransferase activity			central_nervous_system(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.00011)|all cancers(93;0.000238)|GBM - Glioblastoma multiforme(486;0.0164)|Epithelial(262;0.017)		CGGCCAGCAGGATCCCCTGGC	0.657													28	53					0	0	1	0	0
RASIP1	54922	broad.mit.edu	37	19	49227976	49227976	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49227976C>T	uc002pki.2	-	9	2566	c.2369G>A	c.(2368-2370)CGA>CAA	p.R790Q	RASIP1_uc002pkh.2_Missense_Mutation_p.R51Q	NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	790	Dilute.				signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		ACCTTCACCTCGTTCCATCAG	0.552													27	95					0	0	1	0	0
IZUMO1	284359	broad.mit.edu	37	19	49244174	49244174	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49244174C>T	uc002pkj.2	-	10	1592	c.1044G>A	c.(1042-1044)AGG>AGA	p.R348R	RASIP1_uc002pki.2_5'Flank|IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	348	Cytoplasmic (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		TTTATTGTTGCCTCGAATCTG	0.512													18	33					0	0	1	0	0
IZUMO1	284359	broad.mit.edu	37	19	49248976	49248976	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49248976C>T	uc002pkj.2	-	2	689	c.141G>A	c.(139-141)GCG>GCA	p.A47A	IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	47	Extracellular (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		TGTGATGCTTCGCATCCAGGT	0.532													47	106					0	0	1	0	0
FGF21	26291	broad.mit.edu	37	19	49261309	49261309	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49261309G>A	uc002pkn.1	+	4	1034	c.462G>A	c.(460-462)CGG>CGA	p.R154R	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Silent_p.R154R	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	154					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		CCCCACACCGGGACCCTGCAC	0.682													36	56					0	0	1	0	0
FGF21	26291	broad.mit.edu	37	19	49261325	49261325	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49261325G>A	uc002pkn.1	+	4	1050	c.478G>A	c.(478-480)GGA>AGA	p.G160R	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Missense_Mutation_p.G160R	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	160					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		TGCACCCCGAGGACCAGCTCG	0.687													10	48					0	0	1	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49357515	49357515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49357515G>A	uc002pkx.2	-	10	1605	c.1054C>T	c.(1054-1056)CCT>TCT	p.P352S	PLEKHA4_uc002pkw.1_5'UTR|PLEKHA4_uc010eml.2_Missense_Mutation_p.P327S	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	352	Pro-rich.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		TCCAGGGGAGGACCCGGCTGA	0.498													46	97					0	0	1	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49362255	49362255	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49362255G>A	uc002pkx.2	-	8	1385	c.834C>T	c.(832-834)GTC>GTT	p.V278V	PLEKHA4_uc002pkw.1_Intron|PLEKHA4_uc010eml.2_Silent_p.V278V	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	278	Pro-rich.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GAGGAGGTCGGACATCAATGC	0.706													11	30					0	0	1	0	0
PPP1R15A	23645	broad.mit.edu	37	19	49378993	49378993	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49378993C>T	uc002pky.3	+	3	2057	c.1788C>T	c.(1786-1788)ATC>ATT	p.I596I		NM_014330	NP_055145	O75807	PR15A_HUMAN	protein phosphatase 1, regulatory subunit 15A	596					apoptosis|cell cycle arrest|regulation of translation|response to DNA damage stimulus	endoplasmic reticulum	protein binding			lung(1)	1		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000244)|all cancers(93;0.000694)|GBM - Glioblastoma multiforme(486;0.0222)|Epithelial(262;0.033)		CACGCCGCATCACCCAGGCCC	0.726													79	187					0	0	1	0	0
TULP2	7288	broad.mit.edu	37	19	49391246	49391246	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49391246G>A	uc002pkz.2	-	8	1060	c.909C>T	c.(907-909)CCC>CCT	p.P303P		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	303					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		GGTAGTAGAGGGGGAACAAGC	0.612													18	61					0	0	1	0	0
DHDH	27294	broad.mit.edu	37	19	49438278	49438278	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49438278G>A	uc002ple.1	+	2	152	c.112G>A	c.(112-114)GAT>AAT	p.D38N		NM_014475	NP_055290	Q9UQ10	DHDH_HUMAN	dimeric dihydrodiol dehydrogenase	38					carbohydrate metabolic process		binding|D-xylose 1-dehydrogenase (NADP+) activity|electron carrier activity|NAD(P)+ transhydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000158)|all cancers(93;0.000258)|Epithelial(262;0.0173)|GBM - Glioblastoma multiforme(486;0.0179)		GGCGGCCCGCGATCTGAGCCG	0.637													4	10					0	0	1	0	0
DHDH	27294	broad.mit.edu	37	19	49442727	49442727	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49442727C>T	uc002ple.1	+	4	428	c.388C>T	c.(388-390)CCT>TCT	p.P130S		NM_014475	NP_055290	Q9UQ10	DHDH_HUMAN	dimeric dihydrodiol dehydrogenase	130					carbohydrate metabolic process		binding|D-xylose 1-dehydrogenase (NADP+) activity|electron carrier activity|NAD(P)+ transhydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000158)|all cancers(93;0.000258)|Epithelial(262;0.0173)|GBM - Glioblastoma multiforme(486;0.0179)		CCGCTTCTTTCCTGCCTCCGA	0.567													59	101					0	0	1	0	0
GYS1	2997	broad.mit.edu	37	19	49490508	49490508	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49490508G>A	uc002plp.2	-	3	676	c.435C>T	c.(433-435)GAC>GAT	p.D145D	GYS1_uc010xzy.1_Intron|GYS1_uc010emm.2_Intron|GYS1_uc010xzz.1_Silent_p.D65D|GYS1_uc010yaa.1_RNA	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	145					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		TGGCCTCGCGGTCGTACCACG	0.607													14	28					0	0	1	0	0
PPFIA3	8541	broad.mit.edu	37	19	49633259	49633259	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49633259C>T	uc002pmr.2	+	6	924	c.592C>T	c.(592-594)CTT>TTT	p.L198F	PPFIA3_uc010yai.1_RNA|PPFIA3_uc010emt.2_Missense_Mutation_p.L122F|PPFIA3_uc010yaj.1_RNA|PPFIA3_uc002pms.2_Missense_Mutation_p.L66F	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3	198	Potential.					cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		GACTCTGAACCTTCGAGAACA	0.597													6	55					0	0	1	0	0
PPFIA3	8541	broad.mit.edu	37	19	49639110	49639110	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49639110C>T	uc002pmr.2	+	14	1927	c.1595C>T	c.(1594-1596)CCC>CTC	p.P532L	PPFIA3_uc010yai.1_RNA|PPFIA3_uc010emt.2_Missense_Mutation_p.P456L|PPFIA3_uc010yaj.1_RNA|PPFIA3_uc002pms.2_Missense_Mutation_p.P400L	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3	532						cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		CACCTGGATCCCTATGTGGCT	0.627													29	63					0	0	1	0	0
HRC	3270	broad.mit.edu	37	19	49656793	49656793	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49656793C>T	uc002pmv.2	-	1	1889	c.1702G>A	c.(1702-1704)GAG>AAG	p.E568K		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	568					muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		tcttcctcctcGCTGTGGTCT	0.338													10	12					0	0	1	0	0
HRC	3270	broad.mit.edu	37	19	49657924	49657924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49657924C>T	uc002pmv.2	-	1	758	c.571G>A	c.(571-573)GAA>AAA	p.E191K		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	191	4 X tandem repeats, acidic.|1-1.|6 X approximate tandem repeats.				muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		tcttcTCCTTCATCATCTTCC	0.453													29	54					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49674630	49674630	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49674630C>T	uc002pmw.2	+	7	885	c.813C>T	c.(811-813)ATC>ATT	p.I271I	TRPM4_uc010emu.2_Silent_p.I271I|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Silent_p.I97I|TRPM4_uc010emv.2_Silent_p.I156I|TRPM4_uc010yal.1_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	271	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		GAATTGACATCCCTGTCCTGC	0.383													15	59					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49685891	49685891	+	Silent	SNP	C	T	T	rs145772095		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49685891C>T	uc002pmw.2	+	11	1392	c.1320C>T	c.(1318-1320)TTC>TTT	p.F440F	TRPM4_uc010emu.2_Silent_p.F440F|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Silent_p.F266F|TRPM4_uc010emv.2_Silent_p.F325F|TRPM4_uc010yal.1_Silent_p.F86F|TRPM4_uc002pmy.2_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	440	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		GGCCTGAGTTCGTGCGCTTGC	0.607													7	71					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49686399	49686399	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49686399C>T	uc002pmw.2	+	12	1745	c.1673C>T	c.(1672-1674)CCC>CTC	p.P558L	TRPM4_uc010emu.2_Missense_Mutation_p.P558L|TRPM4_uc010yak.1_Missense_Mutation_p.P22L|TRPM4_uc002pmx.2_Missense_Mutation_p.P384L|TRPM4_uc010emv.2_Missense_Mutation_p.P443L|TRPM4_uc010yal.1_Missense_Mutation_p.P204L|TRPM4_uc002pmy.2_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	558	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		GGGCAGGCCCCCTGGAGCGAC	0.627													20	41					0	0	1	0	0
CCDC155	147872	broad.mit.edu	37	19	49918253	49918253	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49918253G>A	uc002pnm.1	+	17	1548	c.1374G>A	c.(1372-1374)ACG>ACA	p.T458T	CCDC155_uc010emx.1_Silent_p.T429T	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	458						integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						GCCAGGTCACGGTAGGCAGTC	0.592													11	17					0	0	1	0	0
SLC17A7	57030	broad.mit.edu	37	19	49939943	49939943	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49939943G>A	uc002pnp.2	-	2	350	c.178C>T	c.(178-180)CCT>TCT	p.P60S	SLC17A7_uc002pnq.1_5'UTR	NM_020309	NP_064705	Q9P2U7	VGLU1_HUMAN	solute carrier family 17, member 7	60	Cytoplasmic (Potential).				glutamate secretion|neurotransmitter secretion	cell junction|clathrin sculpted glutamate transport vesicle membrane|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|sodium-dependent phosphate transmembrane transporter activity|sodium:inorganic phosphate symporter activity			ovary(1)|pancreas(1)|skin(1)	3		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(486;0.0245)		TAGCGGCGAGGGAGGCCGAAG	0.647													42	101					0	0	1	0	0
RPL13A	23521	broad.mit.edu	37	19	49993505	49993505	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:49993505C>T	uc002pny.2	+	3	127	c.105C>T	c.(103-105)GTC>GTT	p.V35V	RPL13A_uc002pnz.2_5'UTR|RPL13A_uc002poa.2_Missense_Mutation_p.S26L|SNORD33_uc010emz.1_5'Flank|SNORD34_uc010ena.1_5'Flank|SNORD35A_uc010enb.1_5'Flank	NM_012423	NP_036555	P40429	RL13A_HUMAN	ribosomal protein L13a	35					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		AGGTGGTGGTCGTACGCTGTG	0.577													18	39					0	0	1	0	0
FCGRT	2217	broad.mit.edu	37	19	50017667	50017667	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50017667C>T	uc002poe.2	+	4	1011	c.525C>T	c.(523-525)CTC>CTT	p.L175L	FCGRT_uc002pod.2_RNA|FCGRT_uc002pog.2_Silent_p.L175L|FCGRT_uc002pof.1_Silent_p.L80L|FCGRT_uc010yax.1_Silent_p.L175L|FCGRT_uc002poh.1_Silent_p.L35L	NM_001136019	NP_001129491	P55899	FCGRN_HUMAN	Fc fragment of IgG, receptor, transporter, alpha	175	Extracellular (Potential).|Alpha-2.				antigen processing and presentation|female pregnancy|immune response	integral to membrane|MHC class I protein complex	IgG binding|receptor activity			ovary(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00291)|GBM - Glioblastoma multiforme(134;0.0156)		ACAAGGAGCTCACCTTCCTGC	0.667													7	28					0	0	1	0	0
FCGRT	2217	broad.mit.edu	37	19	50027802	50027802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50027802C>T	uc002poe.2	+	5	1126	c.640C>T	c.(640-642)CCT>TCT	p.P214S	FCGRT_uc002pod.2_RNA|FCGRT_uc002pog.2_Missense_Mutation_p.P214S|FCGRT_uc002pof.1_Missense_Mutation_p.P119S|FCGRT_uc010yax.1_3'UTR|FCGRT_uc002poh.1_Missense_Mutation_p.P74S|FCGRT_uc002poi.2_5'Flank	NM_001136019	NP_001129491	P55899	FCGRN_HUMAN	Fc fragment of IgG, receptor, transporter, alpha	214	Extracellular (Potential).|Alpha-3.				antigen processing and presentation|female pregnancy|immune response	integral to membrane|MHC class I protein complex	IgG binding|receptor activity			ovary(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00291)|GBM - Glioblastoma multiforme(134;0.0156)		ACCCAGCAGCCCTGGCTTTTC	0.667													27	86					0	0	1	0	0
PRR12	57479	broad.mit.edu	37	19	50099865	50099865	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50099865C>T	uc002poo.3	+	4	2273	c.2273C>T	c.(2272-2274)GCC>GTC	p.A758V		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GAGCTGGGGGCCTTCTTGCAA	0.687													9	19					0	0	1	0	0
PRR12	57479	broad.mit.edu	37	19	50103168	50103168	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50103168C>T	uc002poo.3	+	5	4318	c.4318C>T	c.(4318-4320)CCC>TCC	p.P1440S		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	619	Pro-rich.						DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		TCCGGGGCTCCCCAGTGCCAA	0.577													7	33					0	0	1	0	0
SCAF1	58506	broad.mit.edu	37	19	50154532	50154532	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50154532C>T	uc002poq.2	+	7	1010	c.886C>T	c.(886-888)CGC>TGC	p.R296C		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	296					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		GAGCATCAGCCGCATCTCGGA	0.468													14	23					0	0	1	0	0
BCL2L12	83596	broad.mit.edu	37	19	50170331	50170331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50170331C>T	uc002ppa.2	+	3	1097	c.415C>T	c.(415-417)CCC>TCC	p.P139S	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'Flank|IRF3_uc002pov.2_5'Flank|IRF3_uc002pow.2_5'Flank|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Missense_Mutation_p.P138S	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	139					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		AAGATGTCTTCCCTGCTCCCT	0.607													28	68					0	0	1	0	0
PRMT1	3276	broad.mit.edu	37	19	50188094	50188094	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50188094C>T	uc010enf.1	+	7	681	c.639C>T	c.(637-639)ATC>ATT	p.I213I	PRMT1_uc002ppc.1_RNA|PRMT1_uc002ppd.2_Silent_p.I189I|PRMT1_uc002ppe.2_Silent_p.I195I|PRMT1_uc002ppf.2_RNA|PRMT1_uc002ppg.2_Silent_p.I160I|PRMT1_uc010yba.1_RNA	NM_001536	NP_001527	Q8WUW5	Q8WUW5_HUMAN	HMT1 hnRNP methyltransferase-like 2 isoform 1	194						cytoplasm	protein methyltransferase activity			ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00103)|GBM - Glioblastoma multiforme(134;0.012)		ACTACAAGATCCACTGTGAGC	0.692											OREG0025627	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	17					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50195622	50195622	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50195622C>T	uc002ppj.2	+	2	318	c.113C>T	c.(112-114)TCC>TTC	p.S38F	CPT1C_uc002ppl.3_Missense_Mutation_p.S38F|CPT1C_uc002ppi.2_5'UTR|CPT1C_uc002ppk.2_Missense_Mutation_p.S38F|CPT1C_uc010eng.2_Missense_Mutation_p.S38F|CPT1C_uc010enh.2_Missense_Mutation_p.S38F|CPT1C_uc010ybc.1_5'UTR	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	38	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		GGCCTGCGCTCCTGGAAAAGG	0.617													15	28					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50204093	50204093	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50204093C>T	uc002ppj.2	+	4	639	c.434C>T	c.(433-435)TCC>TTC	p.S145F	CPT1C_uc002ppl.3_Missense_Mutation_p.S145F|CPT1C_uc002ppi.2_Missense_Mutation_p.S62F|CPT1C_uc002ppk.2_Missense_Mutation_p.S145F|CPT1C_uc010eng.2_Missense_Mutation_p.S145F|CPT1C_uc010enh.2_Missense_Mutation_p.S145F|CPT1C_uc010ybc.1_Intron	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	145	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		GCCATGTCCTCCCCCACCAAG	0.522													40	109					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50208317	50208317	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50208317C>T	uc002ppj.2	+	8	1030	c.825C>T	c.(823-825)GCC>GCT	p.A275A	CPT1C_uc002ppl.3_Silent_p.A241A|CPT1C_uc002ppi.2_Silent_p.A192A|CPT1C_uc002ppk.2_Silent_p.A264A|CPT1C_uc010eng.2_Silent_p.A275A|CPT1C_uc010enh.2_Silent_p.A275A|CPT1C_uc010ybc.1_Silent_p.A113A|CPT1C_uc010eni.1_5'Flank	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	275	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		CTGGGAATGCCGTCCATGCCC	0.647													34	63					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50208333	50208333	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50208333C>T	uc002ppj.2	+	8	1046	c.841C>T	c.(841-843)CTG>TTG	p.L281L	CPT1C_uc002ppl.3_Silent_p.L247L|CPT1C_uc002ppi.2_Silent_p.L198L|CPT1C_uc002ppk.2_Silent_p.L270L|CPT1C_uc010eng.2_Silent_p.L281L|CPT1C_uc010enh.2_Silent_p.L281L|CPT1C_uc010ybc.1_Silent_p.L119L|CPT1C_uc010eni.1_5'Flank	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	281	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		TGCCCTCCTCCTGTACCGCCA	0.652													22	76					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50209536	50209536	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50209536G>A	uc002ppj.2	+	11	1414	c.1209G>A	c.(1207-1209)GAG>GAA	p.E403E	CPT1C_uc002ppl.3_Silent_p.E369E|CPT1C_uc002ppi.2_Silent_p.E320E|CPT1C_uc002ppk.2_Silent_p.E392E|CPT1C_uc010eng.2_Silent_p.E403E|CPT1C_uc010enh.2_Silent_p.E403E|CPT1C_uc010ybc.1_Silent_p.E274E|CPT1C_uc010eni.1_Silent_p.E60E	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	403	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		AGGCAGCGGAGGCCCTGGAGG	0.701													5	23					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50213610	50213610	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50213610G>A	uc002ppj.2	+	14	1805	c.1600G>A	c.(1600-1602)GCC>ACC	p.A534T	CPT1C_uc002ppl.3_Missense_Mutation_p.A500T|CPT1C_uc002ppi.2_Missense_Mutation_p.A451T|CPT1C_uc002ppk.2_Missense_Mutation_p.A523T|CPT1C_uc010eng.2_Missense_Mutation_p.A534T|CPT1C_uc010enh.2_Missense_Mutation_p.A534T|CPT1C_uc010ybc.1_Missense_Mutation_p.A405T|CPT1C_uc010eni.1_Missense_Mutation_p.A191T	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	534	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		CCTGAGGGGAGCCAAGATCTT	0.527													10	115					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50213657	50213657	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50213657C>T	uc002ppj.2	+	14	1852	c.1647C>T	c.(1645-1647)TCC>TCT	p.S549S	CPT1C_uc002ppl.3_Silent_p.S515S|CPT1C_uc002ppi.2_Silent_p.S466S|CPT1C_uc002ppk.2_Silent_p.S538S|CPT1C_uc010eng.2_Silent_p.S549S|CPT1C_uc010enh.2_Silent_p.S549S|CPT1C_uc010ybc.1_Silent_p.S420S|CPT1C_uc010eni.1_Silent_p.S206S	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	549	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		TTCCATTCTCCCTATTTGGCA	0.557													17	87					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50216681	50216681	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50216681C>T	uc002ppj.2	+	19	2436	c.2231C>T	c.(2230-2232)TCC>TTC	p.S744F	CPT1C_uc002ppk.2_Missense_Mutation_p.S733F|CPT1C_uc010eng.2_Missense_Mutation_p.S744F|CPT1C_uc010enh.2_Missense_Mutation_p.S744F|CPT1C_uc010eni.1_Missense_Mutation_p.S312F	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	744	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		TTCCAGGATTCCCACAGGCTG	0.353													22	72					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50249785	50249785	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50249785C>T	uc002ppm.2	-	6	945	c.934G>A	c.(934-936)GGC>AGC	p.G312S		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	312							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		ACGTAGGGGCCCTCGCCAGCC	0.701													17	62					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50249977	50249977	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50249977C>T	uc002ppm.2	-	6	753	c.742G>A	c.(742-744)GAG>AAG	p.E248K		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	248							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		tcctgcttctcctccggctcc	0.303													7	15					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50265441	50265441	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50265441G>A	uc002ppm.2	-	2	230	c.219C>T	c.(217-219)CTC>CTT	p.L73L		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	73							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		AGGACCGTTTGAGGTTCAGGC	0.612													9	33					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50266392	50266392	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50266392C>T	uc002ppm.2	-	1	124	c.113G>A	c.(112-114)AGG>AAG	p.R38K		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	38							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		GCTGGTCACCCTCCGGGGAGC	0.622													46	101					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50266481	50266481	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50266481C>T	uc002ppm.2	-	1	35	c.24G>A	c.(22-24)ACG>ACA	p.T8T		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	8							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		ACTGCCAGATCGTCTTCACCA	0.647													52	92					0	0	1	0	0
PNKP	11284	broad.mit.edu	37	19	50370385	50370385	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50370385G>A	uc002pqh.2	-	1	129	c.77C>T	c.(76-78)TCG>TTG	p.S26L	PNKP_uc002pqg.2_5'Flank|PNKP_uc002pqi.2_5'UTR|PNKP_uc002pqj.2_Missense_Mutation_p.S26L|PNKP_uc010enm.2_Missense_Mutation_p.S26L|PNKP_uc002pqk.2_Missense_Mutation_p.S26L	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	26					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		TTGCCCGTCCGAGGGCAGGAA	0.726								Other_BER_factors					13	51					0	0	1	0	0
TBC1D17	79735	broad.mit.edu	37	19	50383659	50383660	+	Splice_Site	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50383659_50383660GG>AA	uc002pqo.2	+	4	471	c.319_splice	c.e4+1	p.G107_splice	TBC1D17_uc010enn.1_Splice_Site|TBC1D17_uc010ybg.1_Splice_Site_p.G74_splice|TBC1D17_uc002pqp.2_Splice_Site|TBC1D17_uc002pqq.1_Splice_Site|TBC1D17_uc002pqr.2_Splice_Site|TBC1D17_uc002pqs.2_5'Flank	NM_024682	NP_078958	Q9HA65	TBC17_HUMAN	TBC1 domain family, member 17							intracellular	Rab GTPase activator activity				0		all_lung(116;0.000338)|Lung NSC(112;0.000446)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		GCCCACGAGAGGTAGGCTGAGG	0.594													18	32					0	0	1	0	0
TBC1D17	79735	broad.mit.edu	37	19	50391759	50391759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50391759C>T	uc002pqo.2	+	17	1977	c.1825C>T	c.(1825-1827)CCG>TCG	p.P609S	TBC1D17_uc010ybg.1_Missense_Mutation_p.P576S|TBC1D17_uc002pqp.2_Missense_Mutation_p.P260S|TBC1D17_uc002pqr.2_Missense_Mutation_p.P260S|TBC1D17_uc002pqs.2_RNA|IL4I1_uc002pqv.1_3'UTR|IL4I1_uc010eno.1_3'UTR|IL4I1_uc002pqw.1_3'UTR	NM_024682	NP_078958	Q9HA65	TBC17_HUMAN	TBC1 domain family, member 17	609	Pro-rich.					intracellular	Rab GTPase activator activity				0		all_lung(116;0.000338)|Lung NSC(112;0.000446)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		CACCGCCTCCCCGCTGCCTCT	0.746													3	12					0	0	1	0	0
IL4I1	259307	broad.mit.edu	37	19	50398423	50398423	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50398423C>T	uc002pqt.1	-	4	345	c.267G>A	c.(265-267)GAG>GAA	p.E89E	IL4I1_uc002pqv.1_Silent_p.E98E|IL4I1_uc010eno.1_Silent_p.E97E|IL4I1_uc002pqw.1_Silent_p.E97E|IL4I1_uc002pqu.1_Silent_p.E111E	NM_152899	NP_690863	Q96RQ9	OXLA_HUMAN	interleukin 4 induced 1 isoform 1 precursor	89		FAD (By similarity).				lysosome	L-amino-acid oxidase activity			lung(1)|ovary(1)|prostate(1)	3		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00245)|OV - Ovarian serous cystadenocarcinoma(262;0.0169)		TGTTATCTGCCTCCAGGATGG	0.662													15	39					0	0	1	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50455584	50455584	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50455584G>A	uc010ybh.1	-	9	1810	c.1719C>T	c.(1717-1719)CTC>CTT	p.L573L	SIGLEC11_uc010ybi.1_Silent_p.L477L	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	573	Helical; (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		AACAGAAAGCGAGCAGGGCAG	0.637													32	107					0	0	1	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50461685	50461685	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50461685G>A	uc010ybh.1	-	8	1597	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S	SIGLEC11_uc010ybi.1_Intron	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	502	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		TGACCTCGAAGGAGCCCTGAC	0.697													4	18					0	0	1	0	0
VRK3	51231	broad.mit.edu	37	19	50504104	50504104	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50504104G>A	uc002prg.2	-	6	653	c.555C>T	c.(553-555)CCC>CCT	p.P185P	VRK3_uc002prh.1_Silent_p.P185P|VRK3_uc002pri.1_Silent_p.P135P|VRK3_uc010ens.2_Silent_p.P185P|VRK3_uc010ybl.1_Silent_p.P135P|VRK3_uc010ybm.1_Missense_Mutation_p.P5L|VRK3_uc002prj.1_Silent_p.P135P|VRK3_uc002prk.1_Silent_p.P185P|VRK3_uc010ent.1_5'UTR|VRK3_uc002prl.2_Silent_p.P185P|VRK3_uc010ybn.1_Silent_p.P185P	NM_016440	NP_057524	Q8IV63	VRK3_HUMAN	vaccinia related kinase 3 isoform 1	185	Protein kinase.					nucleus	ATP binding|protein kinase activity			stomach(1)|skin(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00166)|OV - Ovarian serous cystadenocarcinoma(262;0.00652)		GGGTGGAGGTGGGTGCAGCTG	0.572													6	26					0	0	1	0	0
VRK3	51231	broad.mit.edu	37	19	50511003	50511003	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50511003G>A	uc002prg.2	-	5	468	c.370C>T	c.(370-372)CAG>TAG	p.Q124*	VRK3_uc002prh.1_Nonsense_Mutation_p.Q124*|VRK3_uc002pri.1_Nonsense_Mutation_p.Q74*|VRK3_uc010ens.2_Nonsense_Mutation_p.Q124*|VRK3_uc010ybl.1_Nonsense_Mutation_p.Q74*|VRK3_uc010ybm.1_5'UTR|VRK3_uc002prj.1_Nonsense_Mutation_p.Q74*|VRK3_uc002prk.1_Nonsense_Mutation_p.Q124*|VRK3_uc010ent.1_5'UTR|VRK3_uc002prl.2_Nonsense_Mutation_p.Q124*|VRK3_uc010ybn.1_Nonsense_Mutation_p.Q124*	NM_016440	NP_057524	Q8IV63	VRK3_HUMAN	vaccinia related kinase 3 isoform 1	124						nucleus	ATP binding|protein kinase activity			stomach(1)|skin(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00166)|OV - Ovarian serous cystadenocarcinoma(262;0.00652)		CTGGTCTTCTGAGGGCTACCC	0.602													34	121					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50713817	50713817	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50713817C>T	uc002prr.1	+	2	242	c.195C>T	c.(193-195)TTC>TTT	p.F65F	MYH14_uc010enu.1_Silent_p.F65F|MYH14_uc002prq.1_Silent_p.F65F	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	65	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		TTCACGGGTTCGAGGCGGCGG	0.761													4	6					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50735323	50735323	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50735323C>T	uc002prr.1	+	9	1133	c.1086C>T	c.(1084-1086)ATC>ATT	p.I362I	MYH14_uc010enu.1_Silent_p.I370I|MYH14_uc002prq.1_Silent_p.I370I	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	362	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		ACGAGGAAATCATCTGTGAGT	0.597													14	28					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50752301	50752301	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50752301C>T	uc002prr.1	+	12	1410	c.1363C>T	c.(1363-1365)CTG>TTG	p.L455L	MYH14_uc010enu.1_Silent_p.L463L|MYH14_uc002prq.1_Silent_p.L463L	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	455	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		CTTCCGCTGGCTGGTTCTGCG	0.667													6	18					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50764888	50764888	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50764888C>T	uc002prr.1	+	19	2505	c.2458C>T	c.(2458-2460)CGC>TGC	p.R820C	MYH14_uc010enu.1_Missense_Mutation_p.R861C|MYH14_uc002prq.1_Missense_Mutation_p.R828C	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	820	IQ.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		ATACCTGGCTCGCAGGTGGGC	0.662													13	13					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50781389	50781389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50781389C>T	uc002prr.1	+	28	3799	c.3752C>T	c.(3751-3753)TCC>TTC	p.S1251F	MYH14_uc010enu.1_Missense_Mutation_p.S1292F|MYH14_uc002prq.1_Missense_Mutation_p.S1259F|MYH14_uc010ycb.1_5'Flank	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1251	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GCCGAGGTGTCCGAGCTGCGG	0.612													6	29					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50781399	50781399	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50781399G>A	uc002prr.1	+	28	3809	c.3762G>A	c.(3760-3762)CGG>CGA	p.R1254R	MYH14_uc010enu.1_Silent_p.R1295R|MYH14_uc002prq.1_Silent_p.R1262R|MYH14_uc010ycb.1_5'Flank	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1254	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		CCGAGCTGCGGGCAGAACTGA	0.642													7	25					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50794294	50794294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50794294C>T	uc002prr.1	+	34	5040	c.4993C>T	c.(4993-4995)CGC>TGC	p.R1665C	MYH14_uc010enu.1_Missense_Mutation_p.R1706C|MYH14_uc002prq.1_Missense_Mutation_p.R1673C|MYH14_uc010ycb.1_Missense_Mutation_p.R16C|MYH14_uc002prs.1_Missense_Mutation_p.R16C	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1665	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GAAGCAGCTTCGCAAGATGCA	0.642													11	13					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50813007	50813008	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50813007_50813008CC>TT	uc002prr.1	+	41	5995_5996	c.5948_5949CC>TT	c.(5947-5949)TCC>TTT	p.S1983F	MYH14_uc010enu.1_Missense_Mutation_p.S2024F|MYH14_uc002prq.1_Missense_Mutation_p.S1991F|MYH14_uc010ycb.1_Missense_Mutation_p.S334F|MYH14_uc002prs.1_Missense_Mutation_p.S334F	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1983					axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		TCTGGGCCATCCCCGGAGCCTG	0.683													5	5					0	0	1	0	0
KCNC3	3748	broad.mit.edu	37	19	50823956	50823956	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50823956T>C	uc002pru.1	-	3	2359	c.2064A>G	c.(2062-2064)GAA>GAG	p.E688E	KCNC3_uc002prt.1_Silent_p.E324E	NM_004977	NP_004968	Q14003	KCNC3_HUMAN	Shaw-related voltage-gated potassium channel	688	Cytoplasmic (Potential).				cell death	voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1		all_neural(266;0.057)|Ovarian(192;0.208)		OV - Ovarian serous cystadenocarcinoma(262;0.00283)|GBM - Glioblastoma multiforme(134;0.0181)		GGCTCTTGTCTTCCGGGGACA	0.657													12	39					0	0	1	0	0
KCNC3	3748	broad.mit.edu	37	19	50826512	50826513	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50826512_50826513GG>AA	uc002pru.1	-	2	1992_1993	c.1697_1698CC>TT	c.(1696-1698)CCC>CTT	p.P566L	KCNC3_uc002prt.1_Missense_Mutation_p.P202L	NM_004977	NP_004968	Q14003	KCNC3_HUMAN	Shaw-related voltage-gated potassium channel	566	Cytoplasmic (Potential).				cell death	voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1		all_neural(266;0.057)|Ovarian(192;0.208)		OV - Ovarian serous cystadenocarcinoma(262;0.00283)|GBM - Glioblastoma multiforme(134;0.0181)		CCGGTTGCGGGGGCCGGGGGAT	0.653													9	12					0	0	1	0	0
KCNC3	3748	broad.mit.edu	37	19	50827018	50827018	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50827018G>A	uc002pru.1	-	2	1487	c.1192C>T	c.(1192-1194)CTC>TTC	p.L398F	KCNC3_uc002prt.1_Missense_Mutation_p.L34F	NM_004977	NP_004968	Q14003	KCNC3_HUMAN	Shaw-related voltage-gated potassium channel	398	Helical; Name=Segment S3; (Potential).				cell death	voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1		all_neural(266;0.057)|Ovarian(192;0.208)		OV - Ovarian serous cystadenocarcinoma(262;0.00283)|GBM - Glioblastoma multiforme(134;0.0181)		AGGCCCGAGAGGCCCACCTCG	0.597													25	37					0	0	1	0	0
NR1H2	7376	broad.mit.edu	37	19	50881015	50881015	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50881015C>T	uc010enw.2	+	4	345	c.69C>T	c.(67-69)GCC>GCT	p.A23A	NR1H2_uc002prv.3_RNA|NR1H2_uc002prz.3_Silent_p.A23A|NR1H2_uc002psa.3_Silent_p.A23A	NM_007121	NP_009052	P55055	NR1H2_HUMAN	nuclear receptor subfamily 1, group H, member 2	23					negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of pinocytosis|negative regulation of transcription, DNA-dependent|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		AGCCTGGCGCCCCTTCTTCTT	0.632													24	58					0	0	1	0	0
POLD1	5424	broad.mit.edu	37	19	50906815	50906815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50906815C>T	uc002psb.3	+	10	1259	c.1203C>T	c.(1201-1203)TTC>TTT	p.F401F	POLD1_uc002psc.3_Silent_p.F401F|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Silent_p.F401F	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	401					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		TCCAGAACTTCGACCTTCCGT	0.627								DNA_polymerases_(catalytic_subunits)					61	135					0	0	1	0	0
POLD1	5424	broad.mit.edu	37	19	50909687	50909687	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50909687C>T	uc002psb.3	+	12	1463	c.1407C>T	c.(1405-1407)CTC>CTT	p.L469L	POLD1_uc002psc.3_Silent_p.L469L|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Silent_p.L469L	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	469					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		AGTACAAGCTCCGCTCCTACA	0.657								DNA_polymerases_(catalytic_subunits)					4	4					0	0	1	0	0
SPIB	6689	broad.mit.edu	37	19	50926223	50926223	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50926223G>A	uc002psd.2	+	4	293	c.268G>A	c.(268-270)GAA>AAA	p.E90K	SPIB_uc002pse.2_Missense_Mutation_p.E90K|SPIB_uc010ycc.1_Intron	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)	90					regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			lung(1)|kidney(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		AGGGAACCTCGAACTGGCCCC	0.642													35	116					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50949255	50949255	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50949255C>T	uc002psf.2	+	12	1303	c.1252C>T	c.(1252-1254)CGC>TGC	p.R418C		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	418	Ig-like C2-type 3.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		GGACAGGGGTCGCTATCAGGT	0.597													5	20					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50958867	50958867	+	Silent	SNP	C	T	T	rs145465195	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50958867C>T	uc002psf.2	+	20	2355	c.2304C>T	c.(2302-2304)ATC>ATT	p.I768I		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	768	Fibronectin type-III 2.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CAGGTGGCATCGATGGGTACC	0.622													12	88					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50962182	50962182	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:50962182C>T	uc002psf.2	+	22	2565	c.2514C>T	c.(2512-2514)CCC>CCT	p.P838P		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	838	Ig-like C2-type 6.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CAGAGCCACCCAAGATCCGGC	0.667													3	17					0	0	1	0	0
LRRC4B	94030	broad.mit.edu	37	19	51020884	51020884	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51020884C>T	uc002pss.2	-	3	2223	c.2086G>A	c.(2086-2088)GAA>AAA	p.E696K	ASPDH_uc002psr.3_5'Flank	NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	696	Cytoplasmic (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		AGCAGAGGTTCGTGGATGGAG	0.592													10	25					0	0	1	0	0
SYT3	84258	broad.mit.edu	37	19	51133180	51133180	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51133180C>T	uc002pst.2	-	3	1557	c.923G>A	c.(922-924)CGG>CAG	p.R308Q	SYT3_uc002psv.2_Missense_Mutation_p.R308Q|SYT3_uc010ycd.1_Missense_Mutation_p.R308Q	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	308	C2 1.|Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		ATAGAGGTACCGCAGGGCGAA	0.672													8	105					0	0	1	0	0
SYT3	84258	broad.mit.edu	37	19	51133251	51133251	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51133251C>T	uc002pst.2	-	3	1486	c.852G>A	c.(850-852)CGG>CGA	p.R284R	SYT3_uc002psv.2_Silent_p.R284R|SYT3_uc010ycd.1_Silent_p.R284R	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	284	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		CCCCACCGCTCCGCCGGCCAC	0.662													26	69					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51165482	51165482	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51165482G>A	uc002psx.1	-	23	6245	c.6226C>T	c.(6226-6228)CTC>TTC	p.L2076F	SHANK1_uc002psw.1_Missense_Mutation_p.L1460F	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	2076					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GTCGGTGAGAGGGAGCGCGAG	0.682													6	42					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51170907	51170907	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51170907G>A	uc002psx.1	-	22	4329	c.4310C>T	c.(4309-4311)CCG>CTG	p.P1437L	SHANK1_uc002psw.1_Missense_Mutation_p.P821L	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	1437					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GGCGGCGGGCGGGCTGGCGGG	0.796													4	2					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51189562	51189562	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51189562C>T	uc002psx.1	-	20	2528	c.2509G>A	c.(2509-2511)GAA>AAA	p.E837K	SHANK1_uc002psw.1_Missense_Mutation_p.E221K	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	837					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CCAGGGCTTTCGCTTGCACTG	0.562													26	57					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51192483	51192483	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51192483C>T	uc002psx.1	-	15	2037	c.2018G>A	c.(2017-2019)GGG>GAG	p.G673E	SHANK1_uc002psw.1_Missense_Mutation_p.G57E	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	673	PDZ.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GAACCCAAACCCCTCACTGTC	0.612													18	151					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51201152	51201152	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51201152G>A	uc002psx.1	-	12	1828	c.1809C>T	c.(1807-1809)TTC>TTT	p.F603F		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	603	SH3.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		AGTCAGAGGGGAACCAGCCAA	0.552													20	32					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51205785	51205785	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51205785C>T	uc002psx.1	-	11	1705	c.1686G>A	c.(1684-1686)GTG>GTA	p.V562V		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	562	SH3.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GGTAGGACTTCACAGCCATGA	0.697													3	23					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51215210	51215210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51215210G>A	uc002psx.1	-	6	973	c.954C>T	c.(952-954)ATC>ATT	p.I318I		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	318	ANK 4.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GCACCTGGTGGATTTCCTGCC	0.642													34	103					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51217155	51217155	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51217155C>T	uc002psx.1	-	5	711	c.692G>A	c.(691-693)CGA>CAA	p.R231Q		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	231	ANK 1.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GCACAGGGTTCGAATCACCTC	0.647													17	39					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51220090	51220090	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51220090G>A	uc002psx.1	-	1	106	c.87C>T	c.(85-87)TCC>TCT	p.S29S		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	29					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GCCCGTCTGGGGAGCTGTCGG	0.711													10	6					0	0	1	0	0
KLK1	3816	broad.mit.edu	37	19	51322476	51322476	+	Missense_Mutation	SNP	C	T	T	rs138173062		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51322476C>T	uc002ptk.1	-	5	802	c.763G>A	c.(763-765)GAG>AAG	p.E255K	KLK1_uc010ycg.1_RNA	NM_002257	NP_002248	P06870	KLK1_HUMAN	kallikrein 1 preproprotein	255	Peptidase S1.				proteolysis	nucleus	serine-type endopeptidase activity				0		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00399)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATGGTGTCCTCGATCCACTTC	0.542													15	96					0	0	1	0	0
KLK15	55554	broad.mit.edu	37	19	51330299	51330299	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51330299C>T	uc002ptl.2	-	3	347	c.316G>A	c.(316-318)GAC>AAC	p.D106N	KLK15_uc002ptm.2_Missense_Mutation_p.D106N|KLK15_uc002ptn.2_Missense_Mutation_p.D106N|KLK15_uc002pto.2_Missense_Mutation_p.D105N|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_Missense_Mutation_p.D105N|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	106	Peptidase S1.	Charge relay system (By similarity).			proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		AACATGATGTCGTTGCGGTGG	0.687													20	61					0	0	1	0	0
KLK15	55554	broad.mit.edu	37	19	51330320	51330320	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51330320C>T	uc002ptl.2	-	3	326	c.295G>A	c.(295-297)GAA>AAA	p.E99K	KLK15_uc002ptm.2_Missense_Mutation_p.E99K|KLK15_uc002ptn.2_Missense_Mutation_p.E99K|KLK15_uc002pto.2_Missense_Mutation_p.E98K|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_Missense_Mutation_p.E98K|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	99	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		CTGCGCGCTTCGTAGCGCGGG	0.667													21	73					0	0	1	0	0
KLK15	55554	broad.mit.edu	37	19	51330994	51330994	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51330994C>T	uc002ptl.2	-	2	152	c.121G>A	c.(121-123)GAG>AAG	p.E41K	KLK15_uc002ptm.2_Missense_Mutation_p.E41K|KLK15_uc002ptn.2_Missense_Mutation_p.E41K|KLK15_uc002pto.2_Missense_Mutation_p.E40K|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_Missense_Mutation_p.E40K|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	41	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		CGTCCACGCTCGTAGAGAGCC	0.607													17	31					0	0	1	0	0
KLK3	354	broad.mit.edu	37	19	51361366	51361366	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51361366C>T	uc002pts.1	+	3	329	c.288C>T	c.(286-288)TTC>TTT	p.F96F	KLK3_uc010ycj.1_Silent_p.F96F|KLK3_uc002ptr.1_Intron|KLK3_uc010eof.1_Intron	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	96	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		GCCACAGCTTCCCACACCCGC	0.577													23	47					0	0	1	0	0
KLK2	3817	broad.mit.edu	37	19	51378008	51378008	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51378008G>A	uc002ptv.2	+	2	119	c.78G>A	c.(76-78)GTG>GTA	p.V26V	KLK2_uc010eog.2_Intron|KLK2_uc010yck.1_Silent_p.V26V|KLK2_uc002ptu.2_Silent_p.V26V|KLK2_uc002ptt.2_RNA|KLK2_uc010ycl.1_5'UTR|KLK2_uc010ycm.1_Intron|KLK2_uc010eoh.2_5'Flank	NM_005551	NP_005542	P20151	KLK2_HUMAN	kallikrein 2, prostatic isoform 1	26	Peptidase S1.				proteolysis		serine-type endopeptidase activity			ovary(1)|skin(1)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.00871)		CTCGGATTGTGGGAGGCTGGG	0.622			T	ETV4	prostate								13	55					0	0	1	0	0
KLK2	3817	broad.mit.edu	37	19	51379750	51379750	+	Missense_Mutation	SNP	C	T	T	rs147080743		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51379750C>T	uc002ptv.2	+	3	270	c.229C>T	c.(229-231)CGG>TGG	p.R77W	KLK2_uc010eog.2_5'UTR|KLK2_uc010yck.1_Missense_Mutation_p.R77W|KLK2_uc002ptu.2_Missense_Mutation_p.R77W|KLK2_uc002ptt.2_RNA|KLK2_uc010ycl.1_Missense_Mutation_p.R60W|KLK2_uc010ycm.1_5'UTR|KLK2_uc010eoh.2_5'UTR	NM_005551	NP_005542	P20151	KLK2_HUMAN	kallikrein 2, prostatic isoform 1	77	Peptidase S1.				proteolysis		serine-type endopeptidase activity			ovary(1)|skin(1)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.00871)		CTGGCTGGGTCGGCACAACCT	0.567			T	ETV4	prostate								16	41					0	0	1	0	0
KLK2	3817	broad.mit.edu	37	19	51380010	51380010	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51380010G>A	uc002ptv.2	+	3	530	c.489G>A	c.(487-489)GAG>GAA	p.E163E	KLK2_uc010eog.2_Silent_p.E61E|KLK2_uc010yck.1_Silent_p.E163E|KLK2_uc002ptu.2_Silent_p.E163E|KLK2_uc002ptt.2_RNA|KLK2_uc010ycl.1_Silent_p.E146E|KLK2_uc010ycm.1_Silent_p.E61E|KLK2_uc010eoh.2_Silent_p.E61E	NM_005551	NP_005542	P20151	KLK2_HUMAN	kallikrein 2, prostatic isoform 1	163	Peptidase S1.				proteolysis		serine-type endopeptidase activity			ovary(1)|skin(1)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.00871)		TCGAACCAGAGGAGTGTACGC	0.642			T	ETV4	prostate								11	34					0	0	1	0	0
KLK5	25818	broad.mit.edu	37	19	51446957	51446957	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51446957C>T	uc002pue.2	-	7	1030	c.812G>A	c.(811-813)AGA>AAA	p.R271K	KLK5_uc002puf.2_Missense_Mutation_p.R271K|KLK5_uc002pug.2_Missense_Mutation_p.R271K	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	271	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		GACACCCGGTCTGTTGGGCCG	0.577													20	86					0	0	1	0	0
KLK5	25818	broad.mit.edu	37	19	51452325	51452325	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51452325C>T	uc002pue.2	-	5	600	c.382G>A	c.(382-384)GAA>AAA	p.E128K	KLK5_uc002puf.2_Missense_Mutation_p.E128K|KLK5_uc002pug.2_Missense_Mutation_p.E128K	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	128	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		TGCCCAGATTCATAAACTGGT	0.542													38	109					0	0	1	0	0
KLK7	5650	broad.mit.edu	37	19	51483734	51483734	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51483734G>A	uc002puo.2	-	4	333	c.231C>T	c.(229-231)ACC>ACT	p.T77T	KLK7_uc002pup.2_Silent_p.T77T|KLK7_uc010yco.1_5'UTR|KLK7_uc010eok.2_Silent_p.T5T	NM_139277	NP_644806	P49862	KLK7_HUMAN	stratum corneum chymotryptic enzyme	77	Peptidase S1.				epidermis development|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00382)|GBM - Glioblastoma multiforme(134;0.00895)		CCAGGTGCACGGTGTACTCAC	0.537													9	57					0	0	1	0	0
KLK8	11202	broad.mit.edu	37	19	51503798	51503798	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51503798C>T	uc002pur.1	-	3	291	c.112G>A	c.(112-114)GAG>AAG	p.E38K	KLK9_uc002puw.1_RNA|KLK8_uc002puq.1_Missense_Mutation_p.E83K|KLK8_uc002pus.1_Intron|KLK8_uc002put.1_Intron|KLK8_uc002puu.1_Missense_Mutation_p.E38K|KLK9_uc002puv.1_Intron	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	38	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		GGTTGGCACTCATGACCCCCC	0.637													30	83					0	0	1	0	0
KLK9	284366	broad.mit.edu	37	19	51507037	51507037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51507037G>A	uc002pux.1	-	4	613	c.526C>T	c.(526-528)CAC>TAC	p.H176Y	KLK9_uc002puw.1_RNA|KLK9_uc010eol.1_Missense_Mutation_p.H147Y|KLK8_uc002puq.1_5'Flank|KLK8_uc002pur.1_5'Flank|KLK8_uc002pus.1_5'Flank|KLK8_uc002put.1_5'Flank|KLK8_uc002puu.1_5'Flank|KLK9_uc002puv.1_RNA	NM_012315	NP_036447	Q9UKQ9	KLK9_HUMAN	kallikrein-related peptidase 9 precursor	176	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.0652)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		TATGCCCAGTGACAGAGTTTG	0.567													28	44					0	0	1	0	0
KLK12	43849	broad.mit.edu	37	19	51534092	51534092	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51534092C>T	uc002pvg.1	-	4	663	c.543G>A	c.(541-543)ACG>ACA	p.T181T	KLK11_uc002pvf.1_5'Flank|KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Silent_p.T71T|KLK12_uc010ycr.1_Silent_p.T71T|KLK12_uc010ycs.1_Silent_p.T71T|KLK12_uc002pvh.1_Silent_p.T181T|KLK12_uc002pvi.1_Silent_p.T181T|KLK12_uc002pvj.1_Missense_Mutation_p.E95K	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	181	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		CCATGTTGCTCGTGATTCTCC	0.617													59	123					0	0	1	0	0
KLK12	43849	broad.mit.edu	37	19	51535261	51535261	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51535261G>A	uc002pvg.1	-	3	448	c.328C>T	c.(328-330)CGG>TGG	p.R110W	KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Intron|KLK12_uc010ycr.1_Intron|KLK12_uc010ycs.1_Intron|KLK12_uc002pvh.1_Missense_Mutation_p.R110W|KLK12_uc002pvi.1_Missense_Mutation_p.R110W|KLK12_uc002pvj.1_Intron	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	110	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		CGCAGCAGCCGGAGGTCGTGC	0.682													10	20					0	0	1	0	0
KLK13	26085	broad.mit.edu	37	19	51563821	51563821	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51563821G>A	uc002pvn.2	-	2	151	c.108C>T	c.(106-108)CTC>CTT	p.L36L	KLK13_uc002pvl.2_RNA|KLK13_uc002pvm.2_RNA|KLK13_uc002pvo.2_RNA|KLK13_uc002pvp.2_RNA|KLK13_uc010eon.2_Silent_p.L36L|KLK13_uc002pvq.2_RNA|KLK13_uc010eoo.2_Intron|KLK13_uc002pvr.2_Silent_p.L36L	NM_015596	NP_056411	Q9UKR3	KLK13_HUMAN	kallikrein 13 precursor	36	Peptidase S1.				proteolysis		protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00432)		AGCCACCTGGGAGAAACCCAC	0.572													53	89					0	0	1	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51629059	51629059	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51629059C>T	uc002pvu.2	+	2	694	c.627C>T	c.(625-627)ACC>ACT	p.T209T	SIGLEC9_uc010yct.1_Silent_p.T209T	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	209	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		ACCATGGCACCAGCCTCACCT	0.652													11	120					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51647772	51647772	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51647772G>A	uc002pvv.1	+	2	612	c.543G>A	c.(541-543)ATG>ATA	p.M181I	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	181	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CGCCCCCTATGATCTCCTGGA	0.652													45	165					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51647777	51647777	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51647777C>T	uc002pvv.1	+	2	617	c.548C>T	c.(547-549)TCC>TTC	p.S183F	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	183	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CCTATGATCTCCTGGATGGGG	0.652													58	150					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51647813	51647813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51647813C>T	uc002pvv.1	+	2	653	c.584C>T	c.(583-585)TCC>TTC	p.S195F	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	195	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CTGCACCCCTCCACCACCCGC	0.667													54	107					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51649346	51649346	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51649346C>T	uc002pvv.1	+	4	1064	c.995C>T	c.(994-996)TCC>TTC	p.S332F	SIGLEC7_uc002pvw.1_Missense_Mutation_p.S239F|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	332	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CAGCACGTTTCCCTGAACCTC	0.607													25	61					0	0	1	0	0
CD33	945	broad.mit.edu	37	19	51728689	51728689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51728689G>A	uc002pwa.2	+	2	293	c.253G>A	c.(253-255)GAG>AAG	p.E85K	CD33_uc010eos.1_Missense_Mutation_p.E85K|CD33_uc010eot.1_Intron|CD33_uc010eou.1_5'Flank	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	85	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	AGTACAGGAGGAGACTCAGGG	0.522													26	96					0	0	1	0	0
CD33	945	broad.mit.edu	37	19	51729087	51729087	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51729087C>T	uc002pwa.2	+	3	487	c.447C>T	c.(445-447)ATC>ATT	p.I149I	CD33_uc010eos.1_Silent_p.I149I|CD33_uc010eot.1_Silent_p.I22I|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	149	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	AAATCCTCATCCCTGGCACTC	0.572													47	96					0	0	1	0	0
CD33	945	broad.mit.edu	37	19	51729288	51729288	+	Silent	SNP	C	T	T	rs141510568	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51729288C>T	uc002pwa.2	+	3	688	c.648C>T	c.(646-648)TTC>TTT	p.F216F	CD33_uc010eos.1_Silent_p.F216F|CD33_uc010eot.1_Silent_p.F89F|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	216	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	AGGTGAAGTTCGCTGGAGCTG	0.627													16	37					0	0	1	0	0
CD33	945	broad.mit.edu	37	19	51742772	51742772	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51742772G>A	uc002pwa.2	+	7	965	c.925_splice	c.e7-1	p.K309_splice	CD33_uc010eos.1_3'UTR|CD33_uc010eot.1_Splice_Site_p.K182_splice|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor						cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CTCTCCATAAGAAACACCAGA	0.502													19	41					0	0	1	0	0
C19orf75	284369	broad.mit.edu	37	19	51768752	51768752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51768752G>A	uc002pwb.1	+	3	534	c.153G>A	c.(151-153)ATG>ATA	p.M51I	C19orf75_uc010eov.1_Intron|C19orf75_uc010ycw.1_Intron	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	51						integral to membrane				ovary(1)|pancreas(1)	2						TGGATGGCATGGATGGCAGCC	0.572													32	56					0	0	1	0	0
C19orf75	284369	broad.mit.edu	37	19	51770657	51770657	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51770657G>A	uc002pwb.1	+	5	822	c.441G>A	c.(439-441)AAG>AAA	p.K147K	C19orf75_uc010eov.1_RNA|C19orf75_uc010ycw.1_Silent_p.K53K	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	147						integral to membrane				ovary(1)|pancreas(1)	2						AGCAGGCGAAGAAAGCTGCAG	0.468													58	115					0	0	1	0	0
NKG7	4818	broad.mit.edu	37	19	51875290	51875290	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51875290C>T	uc002pwj.2	-	3	514	c.343G>A	c.(343-345)GAG>AAG	p.E115K	NKG7_uc002pwk.2_Missense_Mutation_p.E80K	NM_005601	NP_005592	Q16617	NKG7_HUMAN	natural killer cell group 7 sequence	115						integral to plasma membrane				central_nervous_system(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000211)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TCCCACCGCTCGCTGGTGTAC	0.607													29	67					0	0	1	0	0
NKG7	4818	broad.mit.edu	37	19	51875645	51875645	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51875645C>T	uc002pwj.2	-	1	316	c.145G>A	c.(145-147)GAC>AAC	p.D49N	NKG7_uc002pwk.2_Missense_Mutation_p.D49N	NM_005601	NP_005592	Q16617	NKG7_HUMAN	natural killer cell group 7 sequence	49						integral to plasma membrane				central_nervous_system(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000211)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GATATGATGTCCCCATGCCCT	0.582													52	164					0	0	1	0	0
LIM2	3982	broad.mit.edu	37	19	51890686	51890686	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51890686G>A	uc002pwm.2	-	2	56	c.12C>T	c.(10-12)TTC>TTT	p.F4F	LIM2_uc002pwl.2_Silent_p.F4F	NM_001161748	NP_001155220	P55344	LMIP_HUMAN	lens intrinsic membrane protein 2, 19kDa isoform	4	Helical; (Potential).				cell-cell junction assembly	cell junction|integral to membrane	structural constituent of eye lens				0		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000214)|OV - Ovarian serous cystadenocarcinoma(262;0.00985)		CACCACCCATGAAGCTGTACA	0.607													20	45					0	0	1	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51914542	51914542	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51914542C>T	uc002pwo.2	-	11	2521	c.1905G>A	c.(1903-1905)AAG>AAA	p.K635K	SIGLEC10_uc002pwp.2_Silent_p.K577K|SIGLEC10_uc002pwq.2_Silent_p.K482K|SIGLEC10_uc002pwr.2_Silent_p.K540K|SIGLEC10_uc010ycy.1_Silent_p.K450K|SIGLEC10_uc010ycz.1_Silent_p.K492K|SIGLEC10_uc010eow.2_Silent_p.K352K	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	635	Cytoplasmic (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		TTTTCTGGTTCTTCTTTGATT	0.532													51	133					0	0	1	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51914613	51914613	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51914613T>G	uc002pwo.2	-	11	2450	c.1834A>C	c.(1834-1836)AAT>CAT	p.N612H	SIGLEC10_uc002pwp.2_Missense_Mutation_p.N554H|SIGLEC10_uc002pwq.2_Missense_Mutation_p.N459H|SIGLEC10_uc002pwr.2_Missense_Mutation_p.N517H|SIGLEC10_uc010ycy.1_Missense_Mutation_p.N427H|SIGLEC10_uc010ycz.1_Missense_Mutation_p.N469H|SIGLEC10_uc010eow.2_Missense_Mutation_p.N329H	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	612	Cytoplasmic (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GCTTTCTGATTCCGCTTCTGA	0.363													23	63					0	0	1	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51920657	51920657	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51920657C>T	uc002pwo.2	-	2	716	c.100G>A	c.(100-102)GGC>AGC	p.G34S	SIGLEC10_uc002pwp.2_Missense_Mutation_p.G34S|SIGLEC10_uc002pwq.2_Missense_Mutation_p.G34S|SIGLEC10_uc002pwr.2_Missense_Mutation_p.G34S|SIGLEC10_uc010ycy.1_Missense_Mutation_p.G34S|SIGLEC10_uc010ycz.1_Missense_Mutation_p.G34S|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Missense_Mutation_p.G18S	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	34	Extracellular (Potential).|Ig-like V-type.				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		ATGCACAGGCCCTCCGGCACC	0.592													22	69					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51955839	51955839	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51955839G>A	uc002pwt.2	-	7	1361	c.1294C>T	c.(1294-1296)CCC>TCC	p.P432S	SIGLEC8_uc010yda.1_Missense_Mutation_p.P323S|SIGLEC8_uc002pwu.2_Intron|SIGLEC8_uc010eox.2_Missense_Mutation_p.P339S	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	432	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		ACAGCTGGGGGAGGCTTCTTC	0.592													22	42					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51955846	51955846	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51955846C>T	uc002pwt.2	-	7	1354	c.1287G>A	c.(1285-1287)AAG>AAA	p.K429K	SIGLEC8_uc010yda.1_Silent_p.K320K|SIGLEC8_uc002pwu.2_Intron|SIGLEC8_uc010eox.2_Silent_p.K336K	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	429	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GGGGAGGCTTCTTCAGGGGGT	0.592													8	51					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51957554	51957554	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51957554C>T	uc002pwt.2	-	6	1231	c.1164G>A	c.(1162-1164)AGG>AGA	p.R388R	SIGLEC8_uc010yda.1_Silent_p.R279R|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Silent_p.R295R	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	388	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CCGATTTCTTCCTGCAGGACC	0.587													32	83					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51960931	51960931	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51960931G>A	uc002pwt.2	-	2	584	c.517C>T	c.(517-519)CTG>TTG	p.L173L	SIGLEC8_uc010yda.1_Intron|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Intron	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	173	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GAGCAGGTCAGGTTCCTGGAG	0.627													30	101					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51960961	51960961	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51960961C>T	uc002pwt.2	-	2	554	c.487G>A	c.(487-489)GGG>AGG	p.G163R	SIGLEC8_uc010yda.1_Intron|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Intron	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	163	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TCTAGGGTCCCTAGGATGAGG	0.602													29	71					0	0	1	0	0
CEACAM18	729767	broad.mit.edu	37	19	51981872	51981872	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51981872C>T	uc002pwv.1	+	2	159	c.159C>T	c.(157-159)CTC>CTT	p.L53L		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	53						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		AGGGACCCCTCCTCCTGGAGG	0.627													4	21					0	0	1	0	0
CEACAM18	729767	broad.mit.edu	37	19	51986446	51986446	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51986446C>T	uc002pwv.1	+	5	1032	c.1032C>T	c.(1030-1032)CTC>CTT	p.L344L		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	344	Ig-like C2-type.					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		AGATGAACCTCTCGAGTCTTG	0.532													37	112					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52000608	52000608	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52000608G>A	uc002pwx.1	-	6	1553	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F	SIGLEC12_uc002pww.1_Silent_p.F381F|SIGLEC12_uc010eoy.1_Silent_p.F226F	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	499	Helical; (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CTCACACAACGAAGATGATGC	0.572													33	79					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52000654	52000654	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52000654C>T	uc002pwx.1	-	6	1507	c.1451G>A	c.(1450-1452)GGA>GAA	p.G484E	SIGLEC12_uc002pww.1_Missense_Mutation_p.G366E|SIGLEC12_uc010eoy.1_Missense_Mutation_p.G211E	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	484	Helical; (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGCTCCAGCTCCCCCGAATGC	0.567													37	100					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52004702	52004702	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52004702G>A	uc002pwx.1	-	1	342	c.286C>T	c.(286-288)CTT>TTT	p.L96F	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	96	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGGTCCCCAAGGAGGTGGAAT	0.542													39	161					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52004741	52004741	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52004741G>A	uc002pwx.1	-	1	303	c.247C>T	c.(247-249)CGA>TGA	p.R83*	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	83	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TGCACTGCTCGAGCTGGGTTG	0.572													47	128					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52023386	52023386	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52023386C>T	uc002pwy.2	-	8	1474	c.1312G>A	c.(1312-1314)GAA>AAA	p.E438K	SIGLEC6_uc002pwz.2_Missense_Mutation_p.E422K|SIGLEC6_uc002pxa.2_3'UTR|SIGLEC6_uc010ydb.1_Missense_Mutation_p.E375K|SIGLEC6_uc010ydc.1_3'UTR|SIGLEC6_uc010eoz.1_3'UTR	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	438	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		ACCTTTGGTTCCTGAGGTTGC	0.498													59	146					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52031002	52031002	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52031002C>T	uc002pwy.2	-	7	1349	c.1187G>A	c.(1186-1188)AGG>AAG	p.R396K	SIGLEC6_uc002pwz.2_Missense_Mutation_p.R380K|SIGLEC6_uc002pxa.2_Intron|SIGLEC6_uc010ydb.1_Missense_Mutation_p.R333K|SIGLEC6_uc010ydc.1_Intron|SIGLEC6_uc010eoz.1_Intron	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	396	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		GTCACTCACCCTGGAGCCTGA	0.488													35	164					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52034098	52034098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52034098G>A	uc002pwy.2	-	3	705	c.543C>T	c.(541-543)TCC>TCT	p.S181S	SIGLEC6_uc002pwz.2_Silent_p.S181S|SIGLEC6_uc002pxa.2_Silent_p.S181S|SIGLEC6_uc010ydb.1_Silent_p.S134S|SIGLEC6_uc010ydc.1_Silent_p.S170S|SIGLEC6_uc010eoz.1_Silent_p.S159S|SIGLEC6_uc010epb.1_Silent_p.S134S|SIGLEC6_uc010epa.1_Silent_p.S170S	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	181	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		CTGACATCCAGGAGAAGATGG	0.652													34	100					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52034117	52034117	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52034117C>T	uc002pwy.2	-	3	686	c.524G>A	c.(523-525)GGG>GAG	p.G175E	SIGLEC6_uc002pwz.2_Missense_Mutation_p.G175E|SIGLEC6_uc002pxa.2_Missense_Mutation_p.G175E|SIGLEC6_uc010ydb.1_Missense_Mutation_p.G128E|SIGLEC6_uc010ydc.1_Missense_Mutation_p.G164E|SIGLEC6_uc010eoz.1_Missense_Mutation_p.G153E|SIGLEC6_uc010epb.1_Missense_Mutation_p.G128E|SIGLEC6_uc010epa.1_Missense_Mutation_p.G164E	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	175	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		GGGGGGCGTCCCCTGCTCACA	0.667													41	101					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52034562	52034562	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52034562G>A	uc002pwy.2	-	2	441	c.279C>T	c.(277-279)TTC>TTT	p.F93F	SIGLEC6_uc002pwz.2_Silent_p.F93F|SIGLEC6_uc002pxa.2_Silent_p.F93F|SIGLEC6_uc010ydb.1_Silent_p.F46F|SIGLEC6_uc010ydc.1_Silent_p.F82F|SIGLEC6_uc010eoz.1_Silent_p.F82F|SIGLEC6_uc010epb.1_Silent_p.F46F|SIGLEC6_uc010epa.1_Silent_p.F82F	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	93	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		AGAGGAGGTGGAATCGGCCCC	0.552													35	108					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52034580	52034580	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52034580C>T	uc002pwy.2	-	2	423	c.261G>A	c.(259-261)GAG>GAA	p.E87E	SIGLEC6_uc002pwz.2_Silent_p.E87E|SIGLEC6_uc002pxa.2_Silent_p.E87E|SIGLEC6_uc010ydb.1_Silent_p.E40E|SIGLEC6_uc010ydc.1_Silent_p.E76E|SIGLEC6_uc010eoz.1_Silent_p.E76E|SIGLEC6_uc010epb.1_Silent_p.E40E|SIGLEC6_uc010epa.1_Silent_p.E76E	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	87	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		CCCGGGTCTCCTCCTGCACTT	0.572													36	100					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52034594	52034594	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52034594C>T	uc002pwy.2	-	2	409	c.247G>A	c.(247-249)GAA>AAA	p.E83K	SIGLEC6_uc002pwz.2_Missense_Mutation_p.E83K|SIGLEC6_uc002pxa.2_Missense_Mutation_p.E83K|SIGLEC6_uc010ydb.1_Missense_Mutation_p.E36K|SIGLEC6_uc010ydc.1_Missense_Mutation_p.E72K|SIGLEC6_uc010eoz.1_Missense_Mutation_p.E72K|SIGLEC6_uc010epb.1_Missense_Mutation_p.E36K|SIGLEC6_uc010epa.1_Missense_Mutation_p.E72K	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	83	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		TGCACTTCTTCGTCTGGGTCG	0.582													31	92					0	0	1	0	0
ZNF175	7728	broad.mit.edu	37	19	52091439	52091439	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52091439A>G	uc002pxb.2	+	5	2233	c.1855A>G	c.(1855-1857)AAA>GAA	p.K619E	uc002pxc.1_5'Flank	NM_007147	NP_009078	Q9Y473	ZN175_HUMAN	zinc finger protein 175	619	C2H2-type 13.				response to virus	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000426)|OV - Ovarian serous cystadenocarcinoma(262;0.0257)		TGTCTGTTACAAATGTGGGAA	0.433													69	145					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52130793	52130793	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52130793G>A	uc002pxe.2	-	6	1343	c.1204C>T	c.(1204-1206)CTC>TTC	p.L402F		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	402	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		TCGGAGCTGAGCCCCCCGTGG	0.632													17	81					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52131148	52131148	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52131148G>A	uc002pxe.2	-	5	1075	c.936C>T	c.(934-936)TTC>TTT	p.F312F		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	312	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CGCGGCAGGTGAAGCCTCCTT	0.572													33	66					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52131192	52131192	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52131192T>A	uc002pxe.2	-	5	1031	c.892A>T	c.(892-894)ATC>TTC	p.I298F		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	298	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		AGCTCCAAGATCCCGGTATTG	0.597													37	103					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52131211	52131211	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52131211G>A	uc002pxe.2	-	5	1012	c.873C>T	c.(871-873)ACC>ACT	p.T291T		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	291	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		TGGAGATGGGGGTGGCGTTCA	0.642													43	112					0	0	1	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52146630	52146630	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52146630C>T	uc002pxf.3	-	7	1289	c.1169G>A	c.(1168-1170)AGC>AAC	p.S390N		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	390	Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		CTCAGCCCTGCTCTGCTGGGG	0.607													6	62					0	0	1	0	0
HAS1	3036	broad.mit.edu	37	19	52220383	52220383	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52220383C>T	uc002pxo.1	-	3	801	c.766G>A	c.(766-768)GAG>AAG	p.E256K	HAS1_uc010epc.1_5'UTR|HAS1_uc010epd.1_Missense_Mutation_p.E221K|HAS1_uc002pxn.1_Missense_Mutation_p.E263K|HAS1_uc002pxp.1_Missense_Mutation_p.E255K	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	256	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		CGGGGGTCCTCGTCCAGTACC	0.622													30	89					0	0	1	0	0
HAS1	3036	broad.mit.edu	37	19	52220436	52220436	+	Missense_Mutation	SNP	G	A	A	rs143266369	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52220436G>A	uc002pxo.1	-	3	748	c.713C>T	c.(712-714)TCG>TTG	p.S238L	HAS1_uc010epc.1_5'UTR|HAS1_uc010epd.1_Missense_Mutation_p.S203L|HAS1_uc002pxn.1_Missense_Mutation_p.S245L|HAS1_uc002pxp.1_Missense_Mutation_p.S237L	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	238	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		CCTTGTGTCCGAGTCACAGAC	0.617													20	46					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249484	52249484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52249484G>A	uc002pxq.2	-	2	859	c.764C>T	c.(763-765)TCC>TTC	p.S255F		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	255	Helical; Name=6; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	CTGATATGGGGACCAGCAGAG	0.498													15	36					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249533	52249533	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52249533G>A	uc002pxq.2	-	2	810	c.715C>T	c.(715-717)CCC>TCC	p.P239S		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	239	Cytoplasmic (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	ACCCGTAAGGGACGACTGGAC	0.507													19	48					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249706	52249706	+	Missense_Mutation	SNP	G	A	A	rs146075164		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52249706G>A	uc002pxq.2	-	2	637	c.542C>T	c.(541-543)TCG>TTG	p.S181L		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	181	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	GGTCCAGGGCGAAAAGTTAAA	0.527													29	75					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249913	52249913	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52249913C>T	uc002pxq.2	-	2	430	c.335G>A	c.(334-336)AGT>AAT	p.S112N		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	112	Helical; Name=3; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	CAGGAAGACACTTCCGAACAA	0.547													21	69					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249993	52249993	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52249993C>T	uc002pxq.2	-	2	350	c.255G>A	c.(253-255)AAG>AAA	p.K85K		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	85	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	CTCCCATGGCCTTCCTGACCA	0.512													11	104					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249996	52249996	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52249996C>T	uc002pxq.2	-	2	347	c.252G>A	c.(250-252)AGG>AGA	p.R84R		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	84	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	CCATGGCCTTCCTGACCATGA	0.517													24	85					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52250002	52250002	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52250002C>T	uc002pxq.2	-	2	341	c.246G>A	c.(244-246)ATG>ATA	p.M82I		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	82	Helical; Name=2; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	CCTTCCTGACCATGAAGAATG	0.517													15	91					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52250020	52250020	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52250020G>A	uc002pxq.2	-	2	323	c.228C>T	c.(226-228)TCC>TCT	p.S76S		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	76	Helical; Name=2; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	ATGGCAAAGTGGAGGTGAAAC	0.522													34	60					0	0	1	0	0
FPR2	2358	broad.mit.edu	37	19	52272026	52272026	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52272026C>T	uc002pxr.2	+	2	160	c.115C>T	c.(115-117)CTC>TTC	p.L39F	FPR2_uc002pxs.3_Missense_Mutation_p.L39F|FPR2_uc010epf.2_Missense_Mutation_p.L39F	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	39	Helical; Name=1; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						CACCTTTGTCCTCGGGGTCCT	0.552													23	77					0	0	1	0	0
FPR2	2358	broad.mit.edu	37	19	52272052	52272052	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52272052G>A	uc002pxr.2	+	2	186	c.141G>A	c.(139-141)GTG>GTA	p.V47V	FPR2_uc002pxs.3_Silent_p.V47V|FPR2_uc010epf.2_Silent_p.V47V	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	47	Helical; Name=1; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						ATGGGCTTGTGATCTGGGTGG	0.557													27	84					0	0	1	0	0
FPR2	2358	broad.mit.edu	37	19	52272394	52272394	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52272394C>T	uc002pxr.2	+	2	528	c.483C>T	c.(481-483)TTC>TTT	p.F161F	FPR2_uc002pxs.3_Silent_p.F161F|FPR2_uc010epf.2_Silent_p.F161F	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	161	Helical; Name=4; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						TGCCAGTTTTCCTCTTTTTGA	0.517													46	86					0	0	1	0	0
FPR2	2358	broad.mit.edu	37	19	52272640	52272640	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52272640C>T	uc002pxr.2	+	2	774	c.729C>T	c.(727-729)CTC>CTT	p.L243L	FPR2_uc002pxs.3_Silent_p.L243L|FPR2_uc010epf.2_Silent_p.L243L	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	243	Helical; Name=6; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						TACGGGTCCTCACTGCTGTGG	0.498													26	48					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327032	52327032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52327032G>A	uc002pxt.1	+	2	215	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	11	Extracellular (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						TCCTCTGAATGAAACTGAGGA	0.493													22	42					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327124	52327124	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52327124C>T	uc002pxt.1	+	2	307	c.123C>T	c.(121-123)GTC>GTT	p.V41V		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	41	Helical; Name=1; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						TCTTCGGGGTCCTGGGCAATG	0.547													27	77					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327285	52327285	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52327285C>T	uc002pxt.1	+	2	468	c.284C>T	c.(283-285)TCA>TTA	p.S95L		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	95	Extracellular (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						CCTTTTGGCTCATTCCTATGT	0.453													38	93					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327383	52327383	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52327383C>T	uc002pxt.1	+	2	566	c.382C>T	c.(382-384)CTG>TTG	p.L128L		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	128	Cytoplasmic (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						TATTTGTGTCCTGCATCCAGC	0.468													31	63					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327717	52327717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52327717C>T	uc002pxt.1	+	2	900	c.716C>T	c.(715-717)CCC>CTC	p.P239L		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	239	Cytoplasmic (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						TCCAGCCGTCCCTTACGTGTC	0.453													19	41					0	0	1	0	0
ZNF577	84765	broad.mit.edu	37	19	52376092	52376092	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52376092G>A	uc010yde.1	-	7	1542	c.1151C>T	c.(1150-1152)TCA>TTA	p.S384L	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Missense_Mutation_p.S325L|ZNF577_uc002pxv.2_Missense_Mutation_p.S377L|ZNF577_uc002pxw.2_Missense_Mutation_p.S318L	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	384					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		CACCGTCAGTGAATTTATGGC	0.423													39	133					0	0	1	0	0
ZNF615	284370	broad.mit.edu	37	19	52497354	52497354	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52497354G>A	uc002pye.1	-	6	1267	c.975C>T	c.(973-975)TTC>TTT	p.F325F	ZNF615_uc002pyf.1_Silent_p.F336F|ZNF615_uc002pyg.1_Silent_p.F217F|ZNF615_uc002pyh.1_Silent_p.F336F|ZNF615_uc010epi.1_Silent_p.F332F|ZNF615_uc010ydg.1_Silent_p.F330F	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	325	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		ACTTTGTAGAGAAGGCCTTCC	0.423													18	163					0	0	1	0	0
ZNF614	80110	broad.mit.edu	37	19	52519592	52519592	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52519592G>A	uc002pyj.2	-	5	1661	c.1259C>T	c.(1258-1260)ACT>ATT	p.T420I	ZNF614_uc002pyi.3_Intron|ZNF614_uc010epj.2_Missense_Mutation_p.T123I	NM_025040	NP_079316	Q8N883	ZN614_HUMAN	zinc finger protein 614	420	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	5		all_neural(266;0.0505)		GBM - Glioblastoma multiforme(134;0.00513)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		TCCTGTATGAGTTCGCTGATG	0.413													29	290					0	0	1	0	0
ZNF841	284371	broad.mit.edu	37	19	52568891	52568891	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52568891G>A	uc002pyl.1	-	5	2448	c.1896C>T	c.(1894-1896)TCC>TCT	p.S632S	ZNF841_uc010ydh.1_Silent_p.S748S|ZNF841_uc010epk.1_Intron	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	632	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGGTTGTAGTGGAGTTAAAGA	0.428													12	17					0	0	1	0	0
ZNF841	284371	broad.mit.edu	37	19	52569401	52569401	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52569401G>A	uc002pyl.1	-	5	1938	c.1386C>T	c.(1384-1386)TTC>TTT	p.F462F	ZNF841_uc010ydh.1_Silent_p.F578F|ZNF841_uc010epk.1_Intron	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	462	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATAGTAAGTGAAGACCATGC	0.418													19	82					0	0	1	0	0
ZNF841	284371	broad.mit.edu	37	19	52569430	52569430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52569430G>A	uc002pyl.1	-	5	1909	c.1357C>T	c.(1357-1359)CTC>TTC	p.L453F	ZNF841_uc010ydh.1_Missense_Mutation_p.L569F|ZNF841_uc010epk.1_Intron	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	453	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTACAATGGAGAGGTTTCTCT	0.403													19	68					0	0	1	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52714601	52714601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52714601C>T	uc002pyp.2	+	4	518	c.359C>T	c.(358-360)TCG>TTG	p.S120L	PPP2R1A_uc010ydk.1_Missense_Mutation_p.S65L|PPP2R1A_uc010epm.1_Missense_Mutation_p.S160L|PPP2R1A_uc002pyq.2_5'UTR	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	120	PP2A subunit B binding.|SV40 small T antigen binding.|HEAT 3.|Polyoma small and medium T antigens Binding.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		CACGAGCACTCGCCCTCTGAC	0.662			Mis		clear cell ovarian carcinoma								10	89					0	0	1	0	0
ZNF480	147657	broad.mit.edu	37	19	52825556	52825556	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52825556C>T	uc010ydl.1	+	5	1123	c.1053C>T	c.(1051-1053)GCC>GCT	p.A351A	ZNF480_uc002pyv.2_Silent_p.A274A|ZNF480_uc010ydm.1_Silent_p.A308A|ZNF480_uc010epn.2_Silent_p.A182A|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	351	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		GTGGCAAGGCCTTCTATAGGA	0.378													29	68					0	0	1	0	0
ZNF610	162963	broad.mit.edu	37	19	52869802	52869802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52869802C>T	uc002pyx.3	+	6	1577	c.1171C>T	c.(1171-1173)CTT>TTT	p.L391F	ZNF610_uc002pyy.3_Missense_Mutation_p.L391F|ZNF610_uc002pyz.3_Missense_Mutation_p.L348F|ZNF610_uc002pza.2_Missense_Mutation_p.L391F	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	391	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		TATGGCCCATCTTCTAATCCA	0.413													21	71					0	0	1	0	0
ZNF528	84436	broad.mit.edu	37	19	52918892	52918892	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52918892C>T	uc002pzh.2	+	7	1213	c.787C>T	c.(787-789)CAT>TAT	p.H263Y	ZNF528_uc002pzi.2_Missense_Mutation_p.H30Y	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	263	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		TCAAAGAATTCATACTGGAGA	0.398													33	101					0	0	1	0	0
ZNF534	147658	broad.mit.edu	37	19	52942138	52942138	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52942138C>T	uc002pzk.2	+	4	1525	c.1464C>T	c.(1462-1464)TTC>TTT	p.F488F	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Silent_p.F475F	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	488	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCAAGGTCTTCAGTCAGAATT	0.418													9	19					0	0	1	0	0
ZNF534	147658	broad.mit.edu	37	19	52942175	52942175	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52942175C>T	uc002pzk.2	+	4	1562	c.1501C>T	c.(1501-1503)CAT>TAT	p.H501Y	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Missense_Mutation_p.H488Y	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	501	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAGGAAAATTCATACTGGAGA	0.403													3	18					0	0	1	0	0
ZNF534	147658	broad.mit.edu	37	19	52942420	52942420	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:52942420G>A	uc002pzk.2	+	4	1807	c.1746G>A	c.(1744-1746)AGG>AGA	p.R582R	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Silent_p.R569R	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	582	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGCGACATAGGAATATTCATA	0.443													9	17					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53015326	53015326	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53015326G>A	uc002pzp.3	+	6	1936	c.1692G>A	c.(1690-1692)GAG>GAA	p.E564E		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	339					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		ATAGCGGAGAGAAACCTTACA	0.393													26	68					0	0	1	0	0
ZNF808	388558	broad.mit.edu	37	19	53058065	53058065	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53058065C>T	uc010epq.1	+	5	2073	c.1896C>T	c.(1894-1896)TTC>TTT	p.F632F	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	632	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		ACACAGCTTTCACGTGGAATT	0.408													15	72					0	0	1	0	0
ZNF701	55762	broad.mit.edu	37	19	53085871	53085871	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53085871C>T	uc002pzs.1	+	4	686	c.559C>T	c.(559-561)CGT>TGT	p.R187C	ZNF701_uc010ydn.1_Missense_Mutation_p.R253C	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	187					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		GCCAAAAACTCGTATTTCTAA	0.383													33	68					0	0	1	0	0
ZNF701	55762	broad.mit.edu	37	19	53086249	53086249	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53086249C>T	uc002pzs.1	+	4	1064	c.937C>T	c.(937-939)CTT>TTT	p.L313F	ZNF701_uc010ydn.1_Missense_Mutation_p.L379F	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	313	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		ACAATCAAACCTTGCACGTCA	0.388													36	92					0	0	1	0	0
ZNF600	162966	broad.mit.edu	37	19	53269385	53269385	+	Missense_Mutation	SNP	G	A	A	rs137948996	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53269385G>A	uc002qab.3	-	3	1910	c.1624C>T	c.(1624-1626)CAT>TAT	p.H542Y		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	542	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		CGATGGCAATGAAGGTATGAC	0.458													101	262					0	0	1	0	0
ZNF600	162966	broad.mit.edu	37	19	53269757	53269757	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53269757C>T	uc002qab.3	-	3	1538	c.1252G>A	c.(1252-1254)GAA>AAA	p.E418K		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	418	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		TTCCCACATTCATTACACTTG	0.358													27	121					0	0	1	0	0
ZNF28	7576	broad.mit.edu	37	19	53303045	53303045	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53303045G>A	uc002qad.2	-	4	2173	c.2053C>T	c.(2053-2055)CAT>TAT	p.H685Y	ZNF28_uc002qac.2_Missense_Mutation_p.H632Y|ZNF28_uc010eqe.2_Missense_Mutation_p.H631Y	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	685	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		TCTCCAGTATGAACTCTCTGA	0.408													53	184					0	0	1	0	0
ZNF468	90333	broad.mit.edu	37	19	53345105	53345105	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53345105G>A	uc002qaf.2	-	4	593	c.442C>T	c.(442-444)CTG>TTG	p.L148L	ZNF468_uc002qae.2_Silent_p.L95L	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	148					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		GGTTCAGGCAGATGCAAATGA	0.403													30	309					0	0	1	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473805	53473805	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53473805G>A	uc002qan.3	-	4		c.696C>T				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						AGATGTGAATGAAAGCTTGAT	0.388													38	104					0	0	1	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473988	53473988	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53473988C>T	uc002qan.3	-	4		c.513G>A				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						AAGGAAAAATCTCCAGTGTGA	0.408													13	132					0	0	1	0	0
ZNF160	90338	broad.mit.edu	37	19	53572226	53572226	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53572226G>A	uc010eqk.2	-	7	1977	c.1561C>T	c.(1561-1563)CGT>TGT	p.R521C	ZNF160_uc002qaq.3_Missense_Mutation_p.R521C|ZNF160_uc002qar.3_Missense_Mutation_p.R521C	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	521	C2H2-type 10.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		AGACTTGAACGAACACTGAAG	0.398													16	148					0	0	1	0	0
ZNF415	55786	broad.mit.edu	37	19	53612962	53612962	+	Silent	SNP	C	T	T	rs148927334		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53612962C>T	uc002qax.2	-	7	829	c.480G>A	c.(478-480)ACG>ACA	p.T160T	ZNF415_uc002qat.2_Silent_p.T124T|ZNF415_uc002qaw.2_Silent_p.T112T|ZNF415_uc010yds.1_Silent_p.T112T|ZNF415_uc010ydt.1_Silent_p.T112T|ZNF415_uc002qau.2_Silent_p.T99T|ZNF415_uc002qav.2_Silent_p.T124T|ZNF415_uc002qba.2_5'UTR|ZNF415_uc002qay.2_Silent_p.T99T|ZNF415_uc002qaz.2_Silent_p.T160T	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	160					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		CTTTTGGGGCCGTAGTCACTT	0.383													7	106					0	0	1	0	0
ZNF665	79788	broad.mit.edu	37	19	53668167	53668167	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53668167G>A	uc010eqm.1	-	4	1676	c.1576C>T	c.(1576-1578)CAT>TAT	p.H526Y		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	461	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		AGGCTTGAATGAACACTAAAG	0.388													44	127					0	0	1	0	0
ZNF665	79788	broad.mit.edu	37	19	53668977	53668977	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53668977G>A	uc010eqm.1	-	4	866	c.766C>T	c.(766-768)CAT>TAT	p.H256Y		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	191	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TCTCCAGTATGAATTCTCTGA	0.398													53	127					0	0	1	0	0
ZNF665	79788	broad.mit.edu	37	19	53678703	53678703	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53678703G>A	uc010eqm.1	-	3	237	c.137C>T	c.(136-138)TCC>TTC	p.S46F		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	Error:Variant_position_missing_in_Q9H7R5_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		CTCACCCAGGGAGACCAGGTT	0.483													56	145					0	0	1	0	0
ZNF677	342926	broad.mit.edu	37	19	53740812	53740812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53740812G>A	uc002qbf.1	-	5	1353	c.1168C>T	c.(1168-1170)CTT>TTT	p.L390F	ZNF677_uc002qbg.1_Missense_Mutation_p.L390F	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	390	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		TGTTGGGTAAGGCTTGAACGT	0.413													11	90					0	0	1	0	0
ZNF677	342926	broad.mit.edu	37	19	53741697	53741697	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53741697C>T	uc002qbf.1	-	5	468	c.283G>A	c.(283-285)GAC>AAC	p.D95N	ZNF677_uc002qbg.1_Missense_Mutation_p.D95N	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	95					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		TCCTTGAGGTCAAAATTGTTG	0.353													29	122					0	0	1	0	0
VN1R2	317701	broad.mit.edu	37	19	53762792	53762792	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53762792C>T	uc002qbi.2	+	1	1248	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	388	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		ATAGACGATTCTTTCATGATT	0.438													38	100					0	0	1	0	0
VN1R4	317703	broad.mit.edu	37	19	53770252	53770253	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53770252_53770253GG>AA	uc010ydu.1	-	1	666_667	c.666_667CC>TT	c.(664-669)TCCCCC>TCTTCC	p.P223S		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	223	Cytoplasmic (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		GAGGCTCTGGGGGAGAGATTGC	0.535										HNSCC(26;0.072)			8	18					0	0	1	0	0
VN1R4	317703	broad.mit.edu	37	19	53770263	53770263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53770263C>T	uc010ydu.1	-	1	656	c.656G>A	c.(655-657)AGC>AAC	p.S219N		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	219	Cytoplasmic (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		GGAGAGATTGCTCCTATCAAT	0.547										HNSCC(26;0.072)			9	26					0	0	1	0	0
VN1R4	317703	broad.mit.edu	37	19	53770916	53770916	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53770916C>T	uc010ydu.1	-	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	1	Extracellular (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		ACCGGGAGGCCATTCTGCCAC	0.507										HNSCC(26;0.072)			20	54					0	0	1	0	0
BIRC8	112401	broad.mit.edu	37	19	53792933	53792933	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53792933C>T	uc002qbk.2	-	1	1943	c.695G>A	c.(694-696)AGA>AAA	p.R232K		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	232					apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		CATAAAAACTCTTTGCTTGAA	0.388													15	160					0	0	1	0	0
BIRC8	112401	broad.mit.edu	37	19	53793021	53793021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53793021G>A	uc002qbk.2	-	1	1855	c.607C>T	c.(607-609)CCT>TCT	p.P203S		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	203	RING-type.				apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		TGTCCACAAGGAATAAAAACA	0.438													25	81					0	0	1	0	0
ZNF845	91664	broad.mit.edu	37	19	53854443	53854443	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53854443C>T	uc010ydv.1	+	4	632	c.515C>T	c.(514-516)TCG>TTG	p.S172L	ZNF845_uc010ydw.1_Missense_Mutation_p.S172L	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AACAGTGCTTCGTTGGTTTCA	0.393													44	115					0	0	1	0	0
ZNF525	170958	broad.mit.edu	37	19	53885197	53885197	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53885197C>T	uc010eqn.2	+	4	1450	c.1257C>T	c.(1255-1257)ACC>ACT	p.T419T	ZNF525_uc002qbl.2_Intron|ZNF765_uc010ydx.1_Intron	NR_003699				Homo sapiens cDNA FLJ39718 fis, clone SMINT2013695.												0						TATCCCTTACCTGCCATTGTA	0.378													21	39					0	0	1	0	0
ZNF761	388561	broad.mit.edu	37	19	53958448	53958448	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53958448C>T	uc010eqp.2	+	7	1145	c.687C>T	c.(685-687)CTC>CTT	p.L229L	ZNF761_uc010ydy.1_Silent_p.L175L|ZNF761_uc002qbt.1_Silent_p.L175L	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	229	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		ACAGCTCACTCTTAAGGAAAC	0.363													46	169					0	0	1	0	0
ZNF813	126017	broad.mit.edu	37	19	53994932	53994932	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:53994932C>T	uc002qbu.2	+	4	1574	c.1446C>T	c.(1444-1446)CTC>CTT	p.L482L	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	482	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		TTTCAGCCCTCGTAATTCATA	0.403													18	68					0	0	1	0	0
ZNF331	55422	broad.mit.edu	37	19	54080123	54080123	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54080123G>A	uc002qbx.1	+	7	1743	c.309G>A	c.(307-309)ATG>ATA	p.M103I	ZNF331_uc002qby.1_Missense_Mutation_p.M103I|ZNF331_uc002qbz.1_Missense_Mutation_p.M103I|ZNF331_uc002qca.1_Missense_Mutation_p.M103I|ZNF331_uc010eqr.1_Missense_Mutation_p.M103I|ZNF331_uc002qcb.1_Missense_Mutation_p.M103I|ZNF331_uc002qcc.1_Missense_Mutation_p.M103I|ZNF331_uc002qcd.1_Missense_Mutation_p.M103I	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	103					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		TCAATCAGATGATCATCAATT	0.438			T	?	follicular thyroid adenoma								25	69					0	0	1	0	0
ZNF331	55422	broad.mit.edu	37	19	54080195	54080195	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54080195G>A	uc002qbx.1	+	7	1815	c.381G>A	c.(379-381)AAG>AAA	p.K127K	ZNF331_uc002qby.1_Silent_p.K127K|ZNF331_uc002qbz.1_Silent_p.K127K|ZNF331_uc002qca.1_Silent_p.K127K|ZNF331_uc010eqr.1_Silent_p.K127K|ZNF331_uc002qcb.1_Silent_p.K127K|ZNF331_uc002qcc.1_Silent_p.K127K|ZNF331_uc002qcd.1_Silent_p.K127K	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	127					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		GACATCATAAGGAGAATTCCT	0.423			T	?	follicular thyroid adenoma								36	85					0	0	1	0	0
ZNF331	55422	broad.mit.edu	37	19	54080819	54080819	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54080819C>T	uc002qbx.1	+	7	2439	c.1005C>T	c.(1003-1005)GCC>GCT	p.A335A	ZNF331_uc002qby.1_Silent_p.A335A|ZNF331_uc002qbz.1_Silent_p.A335A|ZNF331_uc002qca.1_Silent_p.A335A|ZNF331_uc010eqr.1_Silent_p.A335A|ZNF331_uc002qcb.1_Silent_p.A335A|ZNF331_uc002qcc.1_Silent_p.A335A|ZNF331_uc002qcd.1_Silent_p.A335A	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	335	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		GTGGGAAGGCCTTTCGCTGGG	0.512			T	?	follicular thyroid adenoma								19	53					0	0	1	0	0
ZNF331	55422	broad.mit.edu	37	19	54080850	54080850	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54080850G>A	uc002qbx.1	+	7	2470	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K	ZNF331_uc002qby.1_Missense_Mutation_p.E346K|ZNF331_uc002qbz.1_Missense_Mutation_p.E346K|ZNF331_uc002qca.1_Missense_Mutation_p.E346K|ZNF331_uc010eqr.1_Missense_Mutation_p.E346K|ZNF331_uc002qcb.1_Missense_Mutation_p.E346K|ZNF331_uc002qcc.1_Missense_Mutation_p.E346K|ZNF331_uc002qcd.1_Missense_Mutation_p.E346K	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	346	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		CGTTAAGCACGAGAGGATACA	0.527			T	?	follicular thyroid adenoma								21	51					0	0	1	0	0
DPRX	503834	broad.mit.edu	37	19	54140039	54140039	+	Nonsense_Mutation	SNP	C	T	T	rs150237904		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54140039C>T	uc002qcf.1	+	3	424	c.373C>T	c.(373-375)CGA>TGA	p.R125*		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	125						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		CACGGGTCATCGAGTCCCCTC	0.567													12	99					0	0	1	0	0
DPRX	503834	broad.mit.edu	37	19	54140117	54140117	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54140117C>T	uc002qcf.1	+	3	502	c.451C>T	c.(451-453)CAT>TAT	p.H151Y		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	151						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		CAGAATAGTCCATTTTGGCTG	0.522													61	135					0	0	1	0	0
MIR498	574460	broad.mit.edu	37	19	54177468	54177468	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54177468G>A	hsa-mir-498|MI0003142	+			c.18G>A			MIR520E_hsa-mir-520e|MI0003143_5'Flank																	0						CTTGGGAAGTGAAGCTCAGGC	0.448													39	99					0	0	1	0	0
MIR518F	574472	broad.mit.edu	37	19	54203316	54203316	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54203316G>A	hsa-mir-518f|MI0003154	+			c.48G>A			MIR520B_hsa-mir-520b|MI0003155_5'Flank|MIR518B_hsa-mir-518b|MI0003156_5'Flank																	0						TTGTCTAAAAGAAAAGAAAGC	0.388													26	113					0	0	1	0	0
MIR518A1	574488	broad.mit.edu	37	19	54234287	54234287	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54234287C>T	hsa-mir-518a-1|MI0003170	+			c.28C>T																				0						AAAGGGAAGCCCTTTCTGTTG	0.433													48	141					0	0	1	0	0
MIR522	574495	broad.mit.edu	37	19	54254478	54254478	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54254478C>T	hsa-mir-522|MI0003177	+			c.14C>T			MIR519A1_hsa-mir-519a-1|MI0003178_5'Flank|MIR527_hsa-mir-527|MI0003179_5'Flank																	0						CAGGCTGTGTCCCTCTAGAGG	0.413													51	119					0	0	1	0	0
MIR527	574497	broad.mit.edu	37	19	54257294	54257294	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54257294G>A	hsa-mir-527|MI0003179	+			c.23G>A			MIR516A1_hsa-mir-516a-1|MI0003180_5'Flank																	0						ACTGCAAAGGGAAGCCCTTTC	0.418													25	189					0	0	1	0	0
MIR371	442916	broad.mit.edu	37	19	54290995	54290995	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54290995C>T	hsa-mir-371|MI0000779	+			c.67C>T			uc010yec.1_RNA|uc010yed.1_5'Flank|MIR372_hsa-mir-372|MI0000780_5'Flank|uc010yee.1_5'Flank|MIR373_hsa-mir-373|MI0000781_5'Flank																	0						TTGAGTGTTACCGCTTGAGAA	0.572													10	27					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54299171	54299171	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54299171C>T	uc002qch.3	-	9	3260	c.3040G>A	c.(3040-3042)GGT>AGT	p.G1014S	NLRP12_uc010eqw.2_Missense_Mutation_p.G240S|NLRP12_uc002qci.3_Missense_Mutation_p.G957S|NLRP12_uc002qcj.3_Missense_Mutation_p.G1015S|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Intron	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	1014	LRR 7.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		AGTCGGACACCTGTGTCCCCT	0.557													10	47					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54313046	54313046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54313046C>T	uc002qch.3	-	3	2087	c.1867G>A	c.(1867-1869)GAG>AAG	p.E623K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.E623K|NLRP12_uc002qcj.3_Missense_Mutation_p.E623K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.E623K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	623					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		ATAAACTCCTCCTCCTGGATC	0.567													23	65					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54313098	54313098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54313098G>A	uc002qch.3	-	3	2035	c.1815C>T	c.(1813-1815)ACC>ACT	p.T605T	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.T605T|NLRP12_uc002qcj.3_Silent_p.T605T|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.T605T	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	605					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CCTGCTGCAGGGTGGAGCCGT	0.577													25	81					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54313535	54313535	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54313535C>T	uc002qch.3	-	3	1598	c.1378G>A	c.(1378-1380)GGG>AGG	p.G460R	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.G460R|NLRP12_uc002qcj.3_Missense_Mutation_p.G460R|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.G460R	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	460	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GAGCACAACCCTCTCTGGTTG	0.617													38	79					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54313818	54313818	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54313818G>A	uc002qch.3	-	3	1315	c.1095C>T	c.(1093-1095)TTC>TTT	p.F365F	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.F365F|NLRP12_uc002qcj.3_Silent_p.F365F|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.F365F	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	365	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CTGCCTCAGAGAAGCCCAGGA	0.542													90	226					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54313882	54313882	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54313882G>A	uc002qch.3	-	3	1251	c.1031C>T	c.(1030-1032)CCC>CTC	p.P344L	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.P344L|NLRP12_uc002qcj.3_Missense_Mutation_p.P344L|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.P344L	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	344	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CAAAGCCGTGGGCCGTGTGGT	0.547													48	118					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54314000	54314000	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54314000C>T	uc002qch.3	-	3	1133	c.913G>A	c.(913-915)GAT>AAT	p.D305N	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.D305N|NLRP12_uc002qcj.3_Missense_Mutation_p.D305N|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.D305N	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	305	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CCCTGAGGATCGTGGAAAGAA	0.582													6	66					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54314291	54314291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54314291C>T	uc002qch.3	-	3	842	c.622G>A	c.(622-624)GAG>AAG	p.E208K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.E208K|NLRP12_uc002qcj.3_Missense_Mutation_p.E208K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.E208K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	208					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CGCGGTGGCTCGGGGCGCTCC	0.647													29	89					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54314322	54314322	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54314322C>T	uc002qch.3	-	3	811	c.591G>A	c.(589-591)GAG>GAA	p.E197E	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.E197E|NLRP12_uc002qcj.3_Silent_p.E197E|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.E197E	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	197					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CAAAGAGGGTCTCTATCTTGA	0.637													7	112					0	0	1	0	0
MYADM	91663	broad.mit.edu	37	19	54377181	54377181	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54377181C>T	uc002qcl.2	+	3	546	c.398C>T	c.(397-399)TCG>TTG	p.S133L	MYADM_uc002qcm.2_Missense_Mutation_p.S133L|MYADM_uc002qcn.2_Missense_Mutation_p.S133L|MYADM_uc002qco.2_Missense_Mutation_p.S133L|MYADM_uc002qcp.2_Missense_Mutation_p.S133L	NM_001020820	NP_001018656	Q96S97	MYADM_HUMAN	myeloid-associated differentiation marker	133	MARVEL 1.					integral to membrane				ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.0488)		CACGGCCGTTCGCGGGACCAC	0.652													34	101					0	0	1	0	0
PRKCG	5582	broad.mit.edu	37	19	54395001	54395001	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54395001C>T	uc002qcq.1	+	6	885	c.603C>T	c.(601-603)ATC>ATT	p.I201I	PRKCG_uc010eqz.1_Silent_p.I201I|PRKCG_uc010yef.1_Silent_p.I201I|PRKCG_uc010yeg.1_Silent_p.I201I|PRKCG_uc010yeh.1_Silent_p.I88I	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	201	C2.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		TGAAGCTCATCCCAGACCCTC	0.527													41	118					0	0	1	0	0
PRKCG	5582	broad.mit.edu	37	19	54395847	54395847	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54395847G>A	uc002qcq.1	+	7	1053	c.771G>A	c.(769-771)GGG>GGA	p.G257G	PRKCG_uc010eqz.1_Silent_p.G257G|PRKCG_uc010yef.1_Silent_p.G257G|PRKCG_uc010yeg.1_Silent_p.G257G|PRKCG_uc010yeh.1_Silent_p.G144G	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	257	C2.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		ACTTCATGGGGGCCATGTCCT	0.657													6	23					0	0	1	0	0
PRKCG	5582	broad.mit.edu	37	19	54403940	54403940	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54403940G>A	uc002qcq.1	+	14	1794	c.1512G>A	c.(1510-1512)GAG>GAA	p.E504E	PRKCG_uc010yeg.1_Silent_p.E504E|PRKCG_uc010yeh.1_Silent_p.E391E	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	504	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		TGTGTAAGGAGAACGTCTTCC	0.587													90	361					0	0	1	0	0
CACNG8	59283	broad.mit.edu	37	19	54466657	54466657	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54466657C>T	uc002qcs.1	+	1	364	c.258C>T	c.(256-258)CTC>CTT	p.L86L		NM_031895	NP_114101	Q8WXS5	CCG8_HUMAN	voltage-dependent calcium channel gamma-8	87					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic density|postsynaptic membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0	all_cancers(19;0.0385)|all_epithelial(19;0.0207)|all_lung(19;0.145)|Lung NSC(19;0.168)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.162)		ACTCGGGCCTCTGGAGGATCT	0.771													4	15					0	0	1	0	0
VSTM1	284415	broad.mit.edu	37	19	54554694	54554694	+	Missense_Mutation	SNP	C	T	T	rs147285202	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54554694C>T	uc002qcw.3	-	4	540	c.364G>A	c.(364-366)GAT>AAT	p.D122N	VSTM1_uc010erb.2_RNA|VSTM1_uc002qcx.3_Missense_Mutation_p.D122N	NM_198481	NP_940883	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1	122						integral to membrane					0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)		TCAAGTTCATCGTGTTTATCT	0.393													14	27					0	0	1	0	0
PRPF31	26121	broad.mit.edu	37	19	54625919	54625919	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54625919C>T	uc002qdh.2	+	5	762	c.366C>T	c.(364-366)TTC>TTT	p.F122F	PRPF31_uc010yek.1_Silent_p.F122F	NM_015629	NP_056444	Q8WWY3	PRP31_HUMAN	pre-mRNA processing factor 31 homolog	122					assembly of spliceosomal tri-snRNP	Cajal body|MLL1 complex|nuclear speck|U4 snRNP|U4/U6 x U5 tri-snRNP complex|U4atac snRNP	RNA binding|snRNP binding			ovary(1)	1	all_cancers(19;0.00681)|all_epithelial(19;0.00362)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CAAAGAGATTCCCTGAACTGG	0.493													144	95					0	0	1	0	0
PRPF31	26121	broad.mit.edu	37	19	54626875	54626875	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54626875C>T	uc002qdh.2	+	6	859	c.463C>T	c.(463-465)CTG>TTG	p.L155L	PRPF31_uc010yek.1_Silent_p.L155L	NM_015629	NP_056444	Q8WWY3	PRP31_HUMAN	pre-mRNA processing factor 31 homolog	155					assembly of spliceosomal tri-snRNP	Cajal body|MLL1 complex|nuclear speck|U4 snRNP|U4/U6 x U5 tri-snRNP complex|U4atac snRNP	RNA binding|snRNP binding			ovary(1)	1	all_cancers(19;0.00681)|all_epithelial(19;0.00362)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CAATGAGAACCTGCAGCAGAT	0.612													33	106					0	0	1	0	0
PRPF31	26121	broad.mit.edu	37	19	54627968	54627968	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54627968C>T	uc002qdh.2	+	8	1184	c.788C>T	c.(787-789)TCG>TTG	p.S263L	PRPF31_uc010yek.1_Missense_Mutation_p.S263L	NM_015629	NP_056444	Q8WWY3	PRP31_HUMAN	pre-mRNA processing factor 31 homolog	263	Nop.				assembly of spliceosomal tri-snRNP	Cajal body|MLL1 complex|nuclear speck|U4 snRNP|U4/U6 x U5 tri-snRNP complex|U4atac snRNP	RNA binding|snRNP binding			ovary(1)	1	all_cancers(19;0.00681)|all_epithelial(19;0.00362)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					TCGGGCTTCTCGTCTACCTCA	0.672													40	56					0	0	1	0	0
CNOT3	4849	broad.mit.edu	37	19	54647985	54647986	+	Missense_Mutation	DNP	AC	TT	TT	rs138688054	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54647985_54647986AC>TT	uc002qdj.1	+	7	711_712	c.400_401AC>TT	c.(400-402)ACG>TTG	p.T134L	CNOT3_uc010yel.1_Missense_Mutation_p.T134L|CNOT3_uc002qdi.2_Missense_Mutation_p.T47L|CNOT3_uc002qdk.1_Missense_Mutation_p.T134L|CNOT3_uc010ere.1_RNA	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	134					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					TACCATCGACACGCTCAACATG	0.559													17	28					0	0	1	0	0
CNOT3	4849	broad.mit.edu	37	19	54656240	54656240	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54656240C>T	uc002qdj.1	+	15	2092	c.1781C>T	c.(1780-1782)CCG>CTG	p.P594L	CNOT3_uc010yel.1_Missense_Mutation_p.P594L|CNOT3_uc002qdi.2_Missense_Mutation_p.P507L|CNOT3_uc002qdk.1_Missense_Mutation_p.P594L|CNOT3_uc010ere.1_RNA|CNOT3_uc002qdl.2_Missense_Mutation_p.P49L	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	594	Pro-rich.				nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GTGAACATACCGCTGTCGCTG	0.652													16	94					0	0	1	0	0
TMC4	147798	broad.mit.edu	37	19	54673325	54673325	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54673325G>A	uc010erf.2	-	3	517	c.385C>T	c.(385-387)CGG>TGG	p.R129W	TMC4_uc002qdo.2_Missense_Mutation_p.R123W	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	129	Extracellular (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					TTGGACCTCCGAAGTAGCCGC	0.592													42	82					0	0	1	0	0
MBOAT7	79143	broad.mit.edu	37	19	54687453	54687454	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54687453_54687454GG>AA	uc002qdq.2	-	6	709_710	c.443_444CC>TT	c.(442-444)TCC>TTT	p.S148F	MBOAT7_uc010erg.2_5'UTR|MBOAT7_uc010yem.1_Missense_Mutation_p.S130F|MBOAT7_uc002qdr.2_Missense_Mutation_p.S148F|MBOAT7_uc002qds.2_Missense_Mutation_p.S75F|MBOAT7_uc010yen.1_Missense_Mutation_p.S75F|MBOAT7_uc002qdt.3_Missense_Mutation_p.S148F	NM_024298	NP_077274	Q96N66	MBOA7_HUMAN	membrane bound O-acyltransferase domain	148					phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					TCTCCATCAGGGAGGGCACGTC	0.614													7	78					0	0	1	0	0
LILRB3	11025	broad.mit.edu	37	19	54722248	54722248	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54722248C>T	uc002qef.1	-	11	1686	c.1575G>A	c.(1573-1575)AGG>AGA	p.R525R	LILRB3_uc002qee.1_Silent_p.R525R|LILRB3_uc002qeh.1_Silent_p.R525R|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_Silent_p.R525R|LILRA6_uc002qek.1_Silent_p.R525R|LILRB3_uc010erh.1_Silent_p.R542R|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Silent_p.R525R|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_Intron|LILRB3_uc002qeo.1_Silent_p.R525R|LILRB3_uc002qep.1_Silent_p.R525R|LILRB3_uc002qeq.1_Silent_p.R525R|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Silent_p.R525R	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	525	Cytoplasmic (Potential).			R -> G (in Ref. 2; AAB87667).	cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCAGCTCCACCCTGTCCTCAG	0.418													18	76					0	0	1	0	0
LILRB3	11025	broad.mit.edu	37	19	54746066	54746066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54746066C>T	uc010erh.1	-	3	315	c.191G>A	c.(190-192)GGA>GAA	p.G64E	LILRA6_uc002qew.1_Missense_Mutation_p.G64E|LILRB3_uc002qeh.1_Missense_Mutation_p.G64E|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_Missense_Mutation_p.G64E|LILRA6_uc002qek.1_Missense_Mutation_p.G64E|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Missense_Mutation_p.G64E|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Missense_Mutation_p.G64E|LILRB3_uc002qep.1_Missense_Mutation_p.G64E|LILRB3_uc002qeq.1_Missense_Mutation_p.G64E|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Missense_Mutation_p.G64E|LILRA6_uc010yep.1_Missense_Mutation_p.G64E|LILRA6_uc010yeq.1_Missense_Mutation_p.G64E|LILRA6_uc002qet.3_RNA|LILRA6_uc002qeu.1_Missense_Mutation_p.G64E|LILRA6_uc002qev.1_5'Flank	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	64	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CTCTGGGCTTCCCTCTTTATC	0.587													79	355					0	0	1	0	0
LILRB3	11025	broad.mit.edu	37	19	54746089	54746089	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54746089C>T	uc010erh.1	-	3	292	c.168G>A	c.(166-168)CAG>CAA	p.Q56Q	LILRA6_uc002qew.1_Silent_p.Q56Q|LILRB3_uc002qeh.1_Silent_p.Q56Q|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_Silent_p.Q56Q|LILRA6_uc002qek.1_Silent_p.Q56Q|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Silent_p.Q56Q|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Silent_p.Q56Q|LILRB3_uc002qep.1_Silent_p.Q56Q|LILRB3_uc002qeq.1_Silent_p.Q56Q|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Silent_p.Q56Q|LILRA6_uc010yep.1_Silent_p.Q56Q|LILRA6_uc010yeq.1_Silent_p.Q56Q|LILRA6_uc002qet.3_RNA|LILRA6_uc002qeu.1_Silent_p.Q56Q|LILRA6_uc002qev.1_5'Flank	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	56	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GTTGGTACTCCTGGGCCTCCA	0.592													50	290					0	0	1	0	0
LILRB5	10990	broad.mit.edu	37	19	54759173	54759173	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54759173C>T	uc002qex.2	-	5	1039	c.928G>A	c.(928-930)GAC>AAC	p.D310N	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.D301N|LILRB5_uc002qey.2_Missense_Mutation_p.D310N|LILRB5_uc002qez.2_Missense_Mutation_p.D210N|LILRB5_uc002qfa.1_Missense_Mutation_p.D200N|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	310	Ig-like C2-type 3.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCCAGGGGGTCGCTGGGGGCC	0.667													22	42					0	0	1	0	0
LILRB5	10990	broad.mit.edu	37	19	54760539	54760539	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54760539C>T	uc002qex.2	-	3	279	c.168G>A	c.(166-168)GAG>GAA	p.E56E	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Silent_p.E56E|LILRB5_uc002qey.2_Silent_p.E56E|LILRB5_uc002qez.2_Silent_p.E56E|LILRB5_uc002qfa.1_Silent_p.E46E|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	56	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GACGGTACTCCTCAGTCTCCA	0.627													58	117					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54778665	54778665	+	Missense_Mutation	SNP	G	A	A	rs150493192	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54778665G>A	uc002qfb.2	-	14	1935	c.1669C>T	c.(1669-1671)CCC>TCC	p.P557S	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_3'UTR|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.P556S|LILRB2_uc010yet.1_Missense_Mutation_p.P441S	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	557	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ACATCCTGGGGGGCTTCAGAT	0.637													29	67					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54780682	54780682	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54780682G>A	uc002qfb.2	-	10	1728	c.1462C>T	c.(1462-1464)CAG>TAG	p.Q488*	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Nonsense_Mutation_p.Q488*|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Nonsense_Mutation_p.Q487*|LILRB2_uc010yet.1_Nonsense_Mutation_p.Q372*	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	488	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGTTTGCCCTGACGTCGATGT	0.483													33	175					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54782274	54782274	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54782274G>A	uc002qfb.2	-	7	1364	c.1098C>T	c.(1096-1098)CTC>CTT	p.L366L	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.L366L|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.L366L|LILRB2_uc010yet.1_Silent_p.L250L|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	366	Extracellular (Potential).|Ig-like C2-type 4.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ATCTTAGACGGAGTGGGGCAT	0.572													55	154					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54782677	54782677	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54782677G>A	uc002qfb.2	-	6	1211	c.945C>T	c.(943-945)ATC>ATT	p.I315I	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.I315I|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.I315I|LILRB2_uc010yet.1_Silent_p.I199I|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	315	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CTGTGATCAGGATGTCCAGGG	0.652													22	20					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54782698	54782698	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54782698G>A	uc002qfb.2	-	6	1190	c.924C>T	c.(922-924)GCC>GCT	p.A308A	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.A308A|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.A308A|LILRB2_uc010yet.1_Silent_p.A192A|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	308	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGTCGCTGGGGGCCGAGCACT	0.647													24	21					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54782829	54782829	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54782829G>A	uc002qfb.2	-	6	1059	c.793C>T	c.(793-795)CGC>TGC	p.R265C	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.R265C|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.R265C|LILRB2_uc010yet.1_Missense_Mutation_p.R149C|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	265	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGGAGCTGGCGAAGGTCACGT	0.642													16	85					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54783315	54783315	+	Silent	SNP	G	A	A	rs143879306	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54783315G>A	uc002qfb.2	-	5	809	c.543C>T	c.(541-543)TTC>TTT	p.F181F	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.F181F|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.F181F|LILRB2_uc010yet.1_Silent_p.F65F|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	181	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGCCCACGGAGAAGATGGCGC	0.577													23	127					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54783434	54783434	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54783434G>A	uc002qfb.2	-	5	690	c.424C>T	c.(424-426)CTC>TTC	p.L142F	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.L142F|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.L142F|LILRB2_uc010yet.1_Missense_Mutation_p.L26F|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	142	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCACACTGGAGGGTCACCCTT	0.582													39	107					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54783815	54783815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54783815C>T	uc002qfb.2	-	4	452	c.186G>A	c.(184-186)AGG>AGA	p.R62R	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.R62R|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.R62R|LILRB2_uc010yet.1_5'UTR|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	62	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ATTTTTTCTCCCTATATAGAC	0.552													30	183					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54784155	54784155	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54784155C>T	uc002qfb.2	-	3	301	c.35_splice	c.e3-1	p.G12_splice	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Splice_Site_p.G12_splice|LILRB2_uc010erj.2_Splice_Site|LILRB2_uc002qfc.2_Splice_Site_p.G12_splice|LILRB2_uc010yet.1_Intron|LILRB2_uc010yeu.1_Splice_Site	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,						cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		AGACTCAGCCCTGGAAGAGAG	0.647													8	115					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54784340	54784340	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54784340G>A	uc002qfb.2	-	2	278	c.12C>T	c.(10-12)ATC>ATT	p.I4I	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.I4I|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.I4I|LILRB2_uc010yet.1_5'UTR|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	4					cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGACTGTGACGATGGGGGTCA	0.587													56	144					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54802110	54802110	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54802110C>T	uc002qfd.2	-	6	1143	c.1078G>A	c.(1078-1080)GAG>AAG	p.E360K	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.E296K	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	360	Ig-like C2-type 4.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GCTGCCCCCTCCTTGGTCAAA	0.597													41	124					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54802530	54802530	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54802530G>A	uc002qfd.2	-	5	976	c.911C>T	c.(910-912)TCC>TTC	p.S304F	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.S240F	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	304	Ig-like C2-type 3.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCACTCGGAGGAGAGGTTGTA	0.677													27	74					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54803019	54803019	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54803019G>A	uc002qfd.2	-	4	723	c.658C>T	c.(658-660)CCA>TCA	p.P220S	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	220	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TTCTCACCTGGGACCAGGAGC	0.612													35	101					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54803167	54803167	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54803167G>A	uc002qfd.2	-	4	575	c.510C>T	c.(508-510)TCC>TCT	p.S170S	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	170	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CATGGGAATGGGAGTTCAGGC	0.567													55	105					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54803193	54803193	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54803193C>T	uc002qfd.2	-	4	549	c.484G>A	c.(484-486)GAT>AAT	p.D162N	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	162	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGGTGTTCATCTTCTCCTTCC	0.577													68	105					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54803315	54803315	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54803315G>A	uc002qfd.2	-	4	427	c.362C>T	c.(361-363)GCC>GTC	p.A121V	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.A121V	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	121	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TTTGCTGTAGGCTCCTAGGAG	0.602													24	158					0	0	1	0	0
LILRA5	353514	broad.mit.edu	37	19	54822693	54822693	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54822693G>A	uc002qfe.2	-	5	823	c.703C>T	c.(703-705)CCG>TCG	p.P235S	LILRA5_uc002qff.2_Missense_Mutation_p.P223S|LILRA5_uc010yev.1_Missense_Mutation_p.P235S|LILRA5_uc010yew.1_Missense_Mutation_p.P223S|LILRA5_uc002qfh.1_Missense_Mutation_p.P223S|LILRA5_uc002qfg.1_Missense_Mutation_p.P235S	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	235	Extracellular (Potential).				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCTGAGACCGGAATCTCCAGG	0.567													36	80					0	0	1	0	0
LILRA5	353514	broad.mit.edu	37	19	54823363	54823363	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54823363C>T	uc002qfe.2	-	4	300	c.180G>A	c.(178-180)GGG>GGA	p.G60G	LILRA5_uc002qff.2_Silent_p.G48G|LILRA5_uc010yev.1_Silent_p.G60G|LILRA5_uc010yew.1_Silent_p.G48G|LILRA5_uc002qfh.1_Silent_p.G48G|LILRA5_uc002qfg.1_Silent_p.G60G	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	60	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCACAGAGTTCCCCCGGCTGA	0.612													35	88					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54844923	54844923	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54844923G>A	uc002qfj.2	-	8	1477	c.1420C>T	c.(1420-1422)CCC>TCC	p.P474S	LILRA4_uc002qfi.2_Missense_Mutation_p.P408S	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	474	Cytoplasmic (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CACCTTGGGGGGCTTCTCTGG	0.547													18	71					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54848833	54848833	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54848833G>A	uc002qfj.2	-	5	847	c.790C>T	c.(790-792)CCC>TCC	p.P264S	LILRA4_uc002qfi.2_Missense_Mutation_p.P198S	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	264	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		GGGCGCTGGGGGAGGCCATCG	0.662													21	24					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54849490	54849490	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54849490G>A	uc002qfj.2	-	4	429	c.372C>T	c.(370-372)ACC>ACT	p.T124T	LILRA4_uc002qfi.2_Silent_p.T58T	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	124	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		GTGCGGACAGGGTGGGTCTGC	0.572													13	46					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54849677	54849677	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54849677C>T	uc002qfj.2	-	3	402	c.345G>A	c.(343-345)CTG>CTA	p.L115L	LILRA4_uc002qfi.2_Silent_p.L49L	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	115	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CTGTCACCACCAGCTCCAGGG	0.622													16	67					0	0	1	0	0
LAIR1	3903	broad.mit.edu	37	19	54867965	54867965	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54867965C>T	uc002qfk.1	-	7	936	c.626G>A	c.(625-627)AGG>AAG	p.R209K	LAIR1_uc002qfl.1_Missense_Mutation_p.R192K|LAIR1_uc002qfm.1_Missense_Mutation_p.R208K|LAIR1_uc002qfn.1_Missense_Mutation_p.R191K|LAIR1_uc010yex.1_Missense_Mutation_p.R202K|LAIR1_uc002qfo.2_Missense_Mutation_p.R191K	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	209	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		GGGGCCTCACCTCTGCTGTGG	0.592													13	107					0	0	1	0	0
LAIR1	3903	broad.mit.edu	37	19	54872709	54872709	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54872709G>A	uc002qfk.1	-	3	488	c.178C>T	c.(178-180)CTG>TTG	p.L60L	LAIR1_uc002qfl.1_Silent_p.L60L|LAIR1_uc002qfm.1_Silent_p.L59L|LAIR1_uc002qfn.1_Silent_p.L59L|LAIR1_uc010yex.1_Silent_p.L53L|LAIR1_uc002qfo.2_Silent_p.L42L	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	60	Extracellular (Potential).|Ig-like C2-type.					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		TCCCTCTCCAGGCGGAATGTT	0.562													64	150					0	0	1	0	0
LAIR1	3903	broad.mit.edu	37	19	54872761	54872761	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54872761C>T	uc002qfk.1	-	3	436	c.126G>A	c.(124-126)GGG>GGA	p.G42G	LAIR1_uc002qfl.1_Silent_p.G42G|LAIR1_uc002qfm.1_Silent_p.G41G|LAIR1_uc002qfn.1_Silent_p.G41G|LAIR1_uc010yex.1_Silent_p.G35G|LAIR1_uc002qfo.2_Silent_p.G24G	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	42	Extracellular (Potential).|Ig-like C2-type.					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		TCACATGGCTCCCCAGGGGGA	0.567													60	150					0	0	1	0	0
LAIR1	3903	broad.mit.edu	37	19	54872769	54872769	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54872769G>A	uc002qfk.1	-	3	428	c.118C>T	c.(118-120)CCC>TCC	p.P40S	LAIR1_uc002qfl.1_Missense_Mutation_p.P40S|LAIR1_uc002qfm.1_Missense_Mutation_p.P39S|LAIR1_uc002qfn.1_Missense_Mutation_p.P39S|LAIR1_uc010yex.1_Missense_Mutation_p.P33S|LAIR1_uc002qfo.2_Missense_Mutation_p.P22S	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	40	Extracellular (Potential).|Ig-like C2-type.					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		CTCCCCAGGGGGATCACGGTG	0.547													54	151					0	0	1	0	0
TTYH1	57348	broad.mit.edu	37	19	54930377	54930377	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54930377C>T	uc002qfq.2	+	2	294	c.202C>T	c.(202-204)CGC>TGC	p.R68C	TTYH1_uc010yey.1_Missense_Mutation_p.R117C|TTYH1_uc002qfr.2_Missense_Mutation_p.R68C|TTYH1_uc002qft.2_Missense_Mutation_p.R68C|TTYH1_uc002qfu.1_5'UTR	NM_020659	NP_065710	Q9H313	TTYH1_HUMAN	tweety 1 isoform 1	68	Cytoplasmic (Potential).				cell adhesion	chloride channel complex|plasma membrane	chloride channel activity|iron ion transmembrane transporter activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0767)		CTACCTCATCCGCTTCTGCTG	0.687													35	97					0	0	1	0	0
TTYH1	57348	broad.mit.edu	37	19	54946752	54946752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54946752G>A	uc002qfq.2	+	11	1248	c.1156G>A	c.(1156-1158)GAA>AAA	p.E386K	TTYH1_uc010yey.1_Missense_Mutation_p.R416Q|TTYH1_uc002qfr.2_Missense_Mutation_p.E386K|TTYH1_uc002qft.2_Missense_Mutation_p.E386K	NM_020659	NP_065710	Q9H313	TTYH1_HUMAN	tweety 1 isoform 1	386	Extracellular (Potential).				cell adhesion	chloride channel complex|plasma membrane	chloride channel activity|iron ion transmembrane transporter activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0767)		GGGCCTGTGCGAAGACGCCCT	0.677													18	46					0	0	1	0	0
LENG8	114823	broad.mit.edu	37	19	54963357	54963357	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54963357C>T	uc002qfv.1	+	3	270	c.126C>T	c.(124-126)GCC>GCT	p.A42A	LENG8_uc002qfw.2_Silent_p.A42A			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	42							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		GGGAGAAGGCCCGTCAGGCCC	0.637													26	79					0	0	1	0	0
LENG8	114823	broad.mit.edu	37	19	54965696	54965696	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:54965696C>T	uc002qfv.1	+	5	547	c.403C>T	c.(403-405)CCC>TCC	p.P135S	LENG8_uc002qfw.2_Missense_Mutation_p.P172S			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	135							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		GCCCTCAAATCCCCCACATGG	0.682													21	23					0	0	1	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55043987	55043987	+	RNA	SNP	C	T	T	rs144980151	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55043987C>T	uc010yfa.1	+	1		c.79C>T			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		AGCTCAACCCCTGTGTCCTGC	0.522													33	137					0	0	1	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55044017	55044017	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55044017G>A	uc010yfa.1	+	1		c.109G>A			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		GTGGCACCATGGCCCCCAAAC	0.507													51	117					0	0	1	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55044969	55044969	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55044969C>T	uc010yfa.1	+	3		c.195C>T			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		GACAAGTTCTCCCTGTCAGCC	0.552													7	74					0	0	1	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55045040	55045040	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55045040C>T	uc010yfa.1	+	3		c.266C>T			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		TTCCCATCTTCGGTTTGTCAT	0.537													13	29					0	0	1	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55048253	55048253	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55048253G>A	uc010erm.2	+	1	133	c.121G>A	c.(121-123)GAA>AAA	p.E41K	KIR3DX1_uc010yfa.1_RNA|KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA					Homo sapiens killer cell immunoglobulin-like receptor, three domains, X1, mRNA (cDNA clone IMAGE:4849085).											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		GAGACACAGGGAAGCATTCCA	0.547													44	100					0	0	1	0	0
LILRA2	11027	broad.mit.edu	37	19	55087397	55087397	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55087397G>A	uc002qgg.3	+	6	1165	c.1076G>A	c.(1075-1077)GGG>GAG	p.G359E	LILRA2_uc010ern.2_Missense_Mutation_p.G359E|LILRA2_uc002qgf.2_Missense_Mutation_p.G359E|LILRA2_uc010yfe.1_Missense_Mutation_p.G359E|LILRA2_uc010yff.1_Missense_Mutation_p.G347E|LILRA2_uc010ero.2_Missense_Mutation_p.G347E|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	359	Ig-like C2-type 4.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		ACCAAGGAGGGGGCAGGCCAT	0.617													32	62					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55106215	55106215	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55106215C>T	uc002qgh.1	+	4	338	c.156C>T	c.(154-156)ATC>ATT	p.I52I	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Silent_p.I52I	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	52	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GTCAGGGGATCCTGGAGACCC	0.577													36	101					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55106285	55106285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55106285G>A	uc002qgh.1	+	4	408	c.226G>A	c.(226-228)GAG>AAG	p.E76K	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Missense_Mutation_p.E76K	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	76	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GATCCCACAGGAGATTGTGAA	0.557													47	106					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55106693	55106693	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55106693G>A	uc002qgh.1	+	5	669	c.487G>A	c.(487-489)GAA>AAA	p.E163K	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Missense_Mutation_p.E163K	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	163	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		AGGAGAAGATGAACACCCACA	0.587													56	145					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55107734	55107734	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55107734C>T	uc002qgh.1	+	7	1221	c.1039C>T	c.(1039-1041)CAG>TAG	p.Q347*	LILRA2_uc010yfg.1_Nonsense_Mutation_p.Q345*|LILRA1_uc010yfh.1_Nonsense_Mutation_p.Q347*	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	347	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		CCTGCTGTGTCAGTCATGGGG	0.592													27	86					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55107744	55107744	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55107744G>A	uc002qgh.1	+	7	1231	c.1049G>A	c.(1048-1050)GGG>GAG	p.G350E	LILRA2_uc010yfg.1_Missense_Mutation_p.G348E|LILRA1_uc010yfh.1_Missense_Mutation_p.G350E	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	350	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		CAGTCATGGGGGCCGTTCCAC	0.582													41	86					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55107791	55107791	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55107791C>T	uc002qgh.1	+	7	1278	c.1096C>T	c.(1096-1098)CCC>TCC	p.P366S	LILRA2_uc010yfg.1_Missense_Mutation_p.P364S|LILRA1_uc010yfh.1_Missense_Mutation_p.P366S	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	366	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		AGCTGATGCCCCCCTCCGTCT	0.592													51	110					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55110701	55110701	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55110701G>A	uc002qgh.1	+	8	1444	c.1262G>A	c.(1261-1263)GGA>GAA	p.G421E	LILRA1_uc010yfh.1_Missense_Mutation_p.G421E	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	421	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TGATTCTCAGGAGCAGCTGAG	0.448													15	47					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55143034	55143034	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55143034G>A	uc002qgj.2	+	5	494	c.154G>A	c.(154-156)GGC>AGC	p.G52S	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.G52S|LILRB1_uc002qgk.2_Missense_Mutation_p.G52S|LILRB1_uc002qgm.2_Missense_Mutation_p.G52S|LILRB1_uc010erq.2_Missense_Mutation_p.G52S|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	52	Ig-like C2-type 1.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GTGTCAGGGGGGCCAGGAGAC	0.572										HNSCC(37;0.09)			50	101					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55143388	55143388	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55143388G>A	uc002qgj.2	+	6	701	c.361G>A	c.(361-363)GCC>ACC	p.A121T	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.A121T|LILRB1_uc002qgk.2_Missense_Mutation_p.A121T|LILRB1_uc002qgm.2_Missense_Mutation_p.A121T|LILRB1_uc010erq.2_Missense_Mutation_p.A121T|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	121	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TCTCCTAGGAGCCTACATCAA	0.597										HNSCC(37;0.09)			9	110					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55143679	55143679	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55143679C>T	uc002qgj.2	+	6	992	c.652C>T	c.(652-654)CTG>TTG	p.L218L	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.L218L|LILRB1_uc002qgk.2_Silent_p.L218L|LILRB1_uc002qgm.2_Silent_p.L218L|LILRB1_uc010erq.2_Silent_p.L218L|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	218	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CCTGGAGCTCCTGGTCCTAGG	0.592										HNSCC(37;0.09)			48	147					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55143921	55143921	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55143921C>T	uc002qgj.2	+	7	1008	c.668C>T	c.(667-669)TCT>TTT	p.S223F	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.S223F|LILRB1_uc002qgk.2_Missense_Mutation_p.S223F|LILRB1_uc002qgm.2_Missense_Mutation_p.S223F|LILRB1_uc010erq.2_Missense_Mutation_p.S223F|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	223	Ig-like C2-type 3.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CCAGGTGTTTCTAAGAAGCCA	0.557										HNSCC(37;0.09)			34	80					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55144467	55144467	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55144467G>A	uc002qgj.2	+	8	1299	c.959G>A	c.(958-960)GGA>GAA	p.G320E	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.G320E|LILRB1_uc002qgk.2_Missense_Mutation_p.G320E|LILRB1_uc002qgm.2_Missense_Mutation_p.G320E|LILRB1_uc010erq.2_Missense_Mutation_p.G320E|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	320	Ig-like C2-type 4.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TTCTCTCCAGGACAGTTCTAT	0.607										HNSCC(37;0.09)			14	87					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55174518	55174518	+	Silent	SNP	C	T	T	rs141935558		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55174518C>T	uc002qgp.2	+	1	395	c.33C>T	c.(31-33)CTC>CTT	p.L11L	LILRB4_uc002qgo.1_Silent_p.L52L|LILRB4_uc002qgq.2_Silent_p.L11L|LILRB4_uc010ers.1_5'UTR|LILRB4_uc002qgr.2_Silent_p.L52L|LILRB4_uc010ert.2_Silent_p.L52L|LILRB4_uc010eru.2_Silent_p.L52L	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	11						integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		TGCTCTGCCTCGGTGAGATTT	0.572											OREG0003670	type=REGULATORY REGION|Gene=LILRB4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	7	73					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55177268	55177268	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55177268C>T	uc002qgp.2	+	7	1122	c.760C>T	c.(760-762)CTG>TTG	p.L254L	LILRB4_uc002qgq.2_Silent_p.L254L|LILRB4_uc002qgr.2_Silent_p.L295L|LILRB4_uc010ert.2_Silent_p.L295L|LILRB4_uc010eru.2_Silent_p.L283L	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	254	Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CGCCCAAGGTCTGAGAAGGCA	0.274													4	10					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55179107	55179107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55179107C>T	uc002qgp.2	+	11	1425	c.1063C>T	c.(1063-1065)CCC>TCC	p.P355S	LILRB4_uc002qgq.2_Missense_Mutation_p.P354S|LILRB4_uc002qgr.2_Missense_Mutation_p.P397S|LILRB4_uc010ert.2_Missense_Mutation_p.P396S|LILRB4_uc010eru.2_Missense_Mutation_p.P385S	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	355	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CGATGAAGACCCCCAGGCAGT	0.567													16	80					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55179342	55179342	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55179342C>T	uc002qgp.2	+	12	1581	c.1219C>T	c.(1219-1221)CCC>TCC	p.P407S	LILRB4_uc002qgq.2_Missense_Mutation_p.P406S|LILRB4_uc002qgr.2_Missense_Mutation_p.P449S|LILRB4_uc010ert.2_Missense_Mutation_p.P448S|LILRB4_uc010eru.2_Missense_Mutation_p.P437S	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	407	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		ATCTGAAGCCCCCCAGGATGT	0.647													27	102					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55179383	55179383	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55179383C>T	uc002qgp.2	+	12	1622	c.1260C>T	c.(1258-1260)CTC>CTT	p.L420L	LILRB4_uc002qgq.2_Silent_p.L419L|LILRB4_uc002qgr.2_Silent_p.L462L|LILRB4_uc010ert.2_Silent_p.L461L|LILRB4_uc010eru.2_Silent_p.L450L	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	420	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GCTTTACCCTCAGACAGAAGG	0.627													28	120					0	0	1	0	0
LILRP2	79166	broad.mit.edu	37	19	55220936	55220936	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55220936G>A	uc002qgs.1	+	1		c.1336G>A			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						TTTGATTGAGGAAGGAGAAAA	0.572													7	21					0	0	1	0	0
LILRP2	79166	broad.mit.edu	37	19	55224579	55224579	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55224579C>T	uc002qgs.1	+	1		c.4979C>T			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						TCTGAGACCTCTTGGTCCACC	0.622													21	31					0	0	1	0	0
LILRP2	79166	broad.mit.edu	37	19	55224589	55224589	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55224589C>T	uc002qgs.1	+	1		c.4989C>T			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CTTGGTCCACCATCCCCAGCC	0.612													12	37					0	0	1	0	0
KIR2DL3	3804	broad.mit.edu	37	19	55263177	55263177	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55263177C>T	uc002qgv.2	+	6	810	c.792C>T	c.(790-792)CTC>CTT	p.L264L	KIR2DL3_uc002qgx.2_Silent_p.L264L|KIR2DL3_uc002qgy.2_Silent_p.L166L|KIR2DL3_uc010erw.1_Silent_p.L264L|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron	NM_015868	NP_056952	P43628	KI2L3_HUMAN	killer cell immunoglobulin-like receptor, two	264	Helical; (Potential).				immune response|regulation of immune response	integral to plasma membrane	antigen binding|protein binding|receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		tcttctttctccttcATCGCT	0.433													49	46					0	0	1	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55281307	55281307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55281307C>T	uc002qhb.1	+	1	43	c.5C>T	c.(4-6)TCG>TTG	p.S2L	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_RNA|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.S2L	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	2					immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		AGCACCATGTCGCTCTTGGTC	0.587											OREG0003674	type=REGULATORY REGION|Gene=KIR2DL1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	24	89					0	0	1	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55284800	55284800	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55284800C>T	uc002qhb.1	+	3	124	c.86C>T	c.(85-87)CCT>CTT	p.P29L	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.P29L	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	29	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CACAGAAAACCTTCCCTCCTG	0.507													13	121					0	0	1	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55285069	55285069	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55285069G>A	uc002qhb.1	+	3	393	c.355G>A	c.(355-357)GAC>AAC	p.D119N	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.D119N	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	119	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		TGACCCTCTGGACATCGTGAT	0.522													106	297					0	0	1	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55294968	55294968	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55294968G>A	uc002qhb.1	+	7	886	c.848G>A	c.(847-849)GGA>GAA	p.G283E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_5'Flank|KIR2DL3_uc010erw.1_Missense_Mutation_p.G284E|KIR2DL1_uc002qgz.1_Missense_Mutation_p.G193E|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.G309E	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	283	Cytoplasmic (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GAGTCTGCAGGAAACAGAACA	0.517													45	119					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55331371	55331371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55331371C>T	uc002qhk.3	+	4	622	c.559C>T	c.(559-561)CTT>TTT	p.L187F	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Missense_Mutation_p.L129F|KIR3DL1_uc010esf.2_Missense_Mutation_p.L92F|KIR3DL1_uc010yfo.1_Missense_Mutation_p.L129F|KIR3DL1_uc002qhl.3_Missense_Mutation_p.L187F	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	187	Extracellular (Potential).|Ig-like C2-type 2.				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		TCCCATGATGCTTGCCCTTGC	0.547													38	140					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55346568	55346568	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55346568G>A	uc002qhm.1	+	2	115	c.69G>A	c.(67-69)GAG>GAA	p.E23E	KIR2DS4_uc010yfj.1_Silent_p.E16E|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.E23E|KIR2DS4_uc002qhn.1_5'Flank	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	23	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GGCCACAGGAGGGTAAGTCCT	0.522													36	182					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55351112	55351112	+	Missense_Mutation	SNP	G	A	A	rs111312586	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55351112G>A	uc002qhm.1	+	5	668	c.622G>A	c.(622-624)GAG>AAG	p.E208K	KIR2DS4_uc010yfj.1_Silent_p.T193T|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.T200T|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	208	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CGCTCCCTACGAGTGGTCAAA	0.567													117	76					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55377319	55377319	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55377319C>T	uc002qhl.3	+	7	1123	c.1060C>T	c.(1060-1062)CTC>TTC	p.L354F	KIR3DL2_uc010esh.2_Missense_Mutation_p.L337F|KIR3DL2_uc002qho.3_Missense_Mutation_p.L354F			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	354	Helical; (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		cctcttcatcctcctcctctt	0.408													24	58					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55377343	55377343	+	Missense_Mutation	SNP	C	T	T	rs138402445		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55377343C>T	uc002qhl.3	+	7	1147	c.1084C>T	c.(1084-1086)CGC>TGC	p.R362C	KIR3DL2_uc010esh.2_Missense_Mutation_p.R345C|KIR3DL2_uc002qho.3_Missense_Mutation_p.R362C			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	362	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		tctcctTTATCGCTGGTGCTC	0.448													13	43					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55377838	55377838	+	Missense_Mutation	SNP	G	A	A	rs138770759	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55377838G>A	uc002qhl.3	+	8	1182	c.1119G>A	c.(1117-1119)ATG>ATA	p.M373I	KIR3DL2_uc010esh.2_Missense_Mutation_p.M356I|KIR3DL2_uc002qho.3_Missense_Mutation_p.M373I			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	373	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		CTGCTGTAATGGACCAAGAGC	0.552													42	120					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55378071	55378071	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55378071C>T	uc002qhl.3	+	9	1316	c.1253C>T	c.(1252-1254)CCC>CTC	p.P418L	KIR3DL2_uc010esh.2_Missense_Mutation_p.P401L|KIR3DL2_uc002qho.3_Missense_Mutation_p.P418L			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	418	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		TCTCAGAGGCCCAAGACACCC	0.522													34	393					0	0	1	0	0
NCR1	9437	broad.mit.edu	37	19	55417934	55417934	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55417934G>A	uc002qib.2	+	3	162	c.124G>A	c.(124-126)GAA>AAA	p.E42K	NCR1_uc002qic.2_Missense_Mutation_p.E42K|NCR1_uc002qie.2_Missense_Mutation_p.E42K|NCR1_uc002qid.2_Intron|NCR1_uc002qif.2_Intron|NCR1_uc010esj.2_Intron	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	42	Ig-like 1.|Extracellular (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		GGTTCCAAAGGAAAAGCAAGT	0.547													44	91					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55444962	55444962	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55444962G>A	uc002qih.3	-	8	2693	c.2617C>T	c.(2617-2619)CCT>TCT	p.P873S	NLRP7_uc002qig.3_Missense_Mutation_p.P845S|NLRP7_uc002qii.3_Missense_Mutation_p.P873S|NLRP7_uc010esk.2_Missense_Mutation_p.P873S|NLRP7_uc010esl.2_Missense_Mutation_p.P901S	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	873							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TTACAATCAGGGTAACTCAAG	0.483													15	53					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55444993	55444993	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55444993C>T	uc002qih.3	-	8	2662	c.2586G>A	c.(2584-2586)GGG>GGA	p.G862G	NLRP7_uc002qig.3_Silent_p.G834G|NLRP7_uc002qii.3_Silent_p.G862G|NLRP7_uc010esk.2_Silent_p.G862G|NLRP7_uc010esl.2_Silent_p.G890G	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	862	LRR 6.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GAAACTTCACCCCTGTATCCC	0.507													25	63					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55445082	55445082	+	Missense_Mutation	SNP	C	T	T	rs142522707	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55445082C>T	uc002qih.3	-	8	2573	c.2497G>A	c.(2497-2499)GCC>ACC	p.A833T	NLRP7_uc002qig.3_Missense_Mutation_p.A805T|NLRP7_uc002qii.3_Missense_Mutation_p.A833T|NLRP7_uc010esk.2_Missense_Mutation_p.A833T|NLRP7_uc010esl.2_Missense_Mutation_p.A861T	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	833	LRR 5.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TTGCAACTGGCTTCTGTAAGA	0.468													22	86					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55449572	55449572	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55449572C>T	uc002qih.3	-	5	2045	c.1969G>A	c.(1969-1971)GAT>AAT	p.D657N	NLRP7_uc002qig.3_Intron|NLRP7_uc002qii.3_Missense_Mutation_p.D657N|NLRP7_uc010esk.2_Missense_Mutation_p.D657N|NLRP7_uc010esl.2_Missense_Mutation_p.D685N	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	657							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GAGCGAAGATCCTGCCGAGCC	0.498													35	81					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55450703	55450703	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55450703C>T	uc002qih.3	-	4	1560	c.1484G>A	c.(1483-1485)TGG>TAG	p.W495*	NLRP7_uc002qig.3_Nonsense_Mutation_p.W495*|NLRP7_uc002qii.3_Nonsense_Mutation_p.W495*|NLRP7_uc010esk.2_Nonsense_Mutation_p.W495*|NLRP7_uc010esl.2_Nonsense_Mutation_p.W523*	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	495							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CCCGATGTCCCAGGCGTGGCC	0.572													7	96					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55450836	55450836	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55450836C>T	uc002qih.3	-	4	1427	c.1351G>A	c.(1351-1353)GGA>AGA	p.G451R	NLRP7_uc002qig.3_Missense_Mutation_p.G451R|NLRP7_uc002qii.3_Missense_Mutation_p.G451R|NLRP7_uc010esk.2_Missense_Mutation_p.G451R|NLRP7_uc010esl.2_Missense_Mutation_p.G479R	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	451	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		AGGATGTCTCCGTCCAGGAAC	0.622													19	45					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55450996	55450996	+	Silent	SNP	G	A	A	rs147899515		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55450996G>A	uc002qih.3	-	4	1267	c.1191C>T	c.(1189-1191)TTC>TTT	p.F397F	NLRP7_uc002qig.3_Silent_p.F397F|NLRP7_uc002qii.3_Silent_p.F397F|NLRP7_uc010esk.2_Silent_p.F397F|NLRP7_uc010esl.2_Silent_p.F425F	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	397	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GGCTGCAGAGGAAACGCAGGA	0.697													12	22					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55451240	55451240	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55451240G>A	uc002qih.3	-	4	1023	c.947C>T	c.(946-948)CCG>CTG	p.P316L	NLRP7_uc002qig.3_Missense_Mutation_p.P316L|NLRP7_uc002qii.3_Missense_Mutation_p.P316L|NLRP7_uc010esk.2_Missense_Mutation_p.P316L|NLRP7_uc010esl.2_Missense_Mutation_p.P344L	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	316	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TACGTAGATCGGCTGCTGCGC	0.607													19	37					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55451427	55451427	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55451427C>T	uc002qih.3	-	4	836	c.760G>A	c.(760-762)GGC>AGC	p.G254S	NLRP7_uc002qig.3_Missense_Mutation_p.G254S|NLRP7_uc002qii.3_Missense_Mutation_p.G254S|NLRP7_uc010esk.2_Missense_Mutation_p.G254S|NLRP7_uc010esl.2_Missense_Mutation_p.G282S	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	254	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TCATCAAGGCCATCGACCACG	0.562													43	106					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55451765	55451765	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55451765C>T	uc002qih.3	-	4	498	c.422G>A	c.(421-423)GGA>GAA	p.G141E	NLRP7_uc002qig.3_Missense_Mutation_p.G141E|NLRP7_uc002qii.3_Missense_Mutation_p.G141E|NLRP7_uc010esk.2_Missense_Mutation_p.G141E|NLRP7_uc010esl.2_Missense_Mutation_p.G169E	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	141							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GTCAATGTCTCCTTGCCAAAA	0.463													178	453					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55452895	55452895	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55452895G>A	uc002qih.3	-	2	261	c.185C>T	c.(184-186)TCC>TTC	p.S62F	NLRP7_uc002qig.3_Missense_Mutation_p.S62F|NLRP7_uc002qii.3_Missense_Mutation_p.S62F|NLRP7_uc010esk.2_Missense_Mutation_p.S62F|NLRP7_uc010esl.2_Missense_Mutation_p.S90F	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	62	DAPIN.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		ATTTTCTGAGGAGGTGTTGAC	0.468													40	76					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55481539	55481539	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55481539G>A	uc002qij.2	+	2	242	c.156G>A	c.(154-156)GGG>GGA	p.G52G	NLRP2_uc010yfp.1_Intron|NLRP2_uc010esn.2_Silent_p.G52G|NLRP2_uc010eso.2_Silent_p.G52G|NLRP2_uc010esp.2_Silent_p.G52G	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	52	DAPIN.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		AGGCTGATGGGAAGCAACTGG	0.527													16	63					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55493558	55493558	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55493558G>A	uc002qij.2	+	6	578	c.492G>A	c.(490-492)TTG>TTA	p.L164L	NLRP2_uc010yfp.1_Silent_p.L141L|NLRP2_uc010esn.2_Silent_p.L140L|NLRP2_uc010eso.2_Silent_p.L161L|NLRP2_uc010esp.2_Silent_p.L142L	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	164					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GGTATATATTGAAGACGAAGT	0.453													103	239					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55493706	55493706	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55493706C>T	uc002qij.2	+	6	726	c.640C>T	c.(640-642)CCT>TCT	p.P214S	NLRP2_uc010yfp.1_Missense_Mutation_p.P191S|NLRP2_uc010esn.2_Missense_Mutation_p.P190S|NLRP2_uc010eso.2_Missense_Mutation_p.P211S|NLRP2_uc010esp.2_Missense_Mutation_p.P192S	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	214	NACHT.|ATP (Potential).				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GCTGTATGGTCCTGCAGGCCT	0.532													29	76					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55493984	55493984	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55493984G>A	uc002qij.2	+	6	1004	c.918G>A	c.(916-918)GGG>GGA	p.G306G	NLRP2_uc010yfp.1_Silent_p.G283G|NLRP2_uc010esn.2_Silent_p.G282G|NLRP2_uc010eso.2_Silent_p.G303G|NLRP2_uc010esp.2_Silent_p.G284G	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	306	NACHT.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		ACATCTGCGGGGACTGGGAGA	0.612													25	53					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55494093	55494093	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55494093G>A	uc002qij.2	+	6	1113	c.1027G>A	c.(1027-1029)GAC>AAC	p.D343N	NLRP2_uc010yfp.1_Missense_Mutation_p.D320N|NLRP2_uc010esn.2_Missense_Mutation_p.D319N|NLRP2_uc010eso.2_Missense_Mutation_p.D340N|NLRP2_uc010esp.2_Missense_Mutation_p.D321N	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	343	NACHT.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GGCCCTGAGGGACCTCCGGAT	0.627													13	15					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55494140	55494140	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55494140C>T	uc002qij.2	+	6	1160	c.1074C>T	c.(1072-1074)GGC>GGT	p.G358G	NLRP2_uc010yfp.1_Silent_p.G335G|NLRP2_uc010esn.2_Silent_p.G334G|NLRP2_uc010eso.2_Silent_p.G355G|NLRP2_uc010esp.2_Silent_p.G336G	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	358	NACHT.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GGGTGGAGGGCTTCCTGGAGG	0.622													4	35					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55496418	55496418	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55496418C>T	uc002qij.2	+	7	2120	c.2034C>T	c.(2032-2034)TCC>TCT	p.S678S	NLRP2_uc010yfp.1_Silent_p.S655S|NLRP2_uc010esn.2_Silent_p.S654S|NLRP2_uc010eso.2_Silent_p.S675S|NLRP2_uc010esp.2_Silent_p.S656S	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	678					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CCTATAGATCCCAGGATGATC	0.433													46	99					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55501474	55501474	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55501474C>T	uc002qij.2	+	9	2537	c.2451C>T	c.(2449-2451)AAC>AAT	p.N817N	NLRP2_uc010yfp.1_Silent_p.N794N|NLRP2_uc010esn.2_Silent_p.N793N|NLRP2_uc010eso.2_Silent_p.N814N|NLRP2_uc010esp.2_Silent_p.N795N	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	817	LRR 1.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CGTGCGTAAACCTCTCCGACA	0.522													35	79					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55512153	55512153	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55512153G>A	uc002qij.2	+	13	3162	c.3076G>A	c.(3076-3078)GAA>AAA	p.E1026K	NLRP2_uc010yfp.1_Missense_Mutation_p.E1003K|NLRP2_uc010esn.2_Missense_Mutation_p.E1002K|NLRP2_uc010eso.2_Missense_Mutation_p.E1023K|NLRP2_uc010esp.2_Missense_Mutation_p.E1004K	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	1026	LRR 8.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CTTTAATGATGAACTCAATAA	0.388													42	93					0	0	1	0	0
GP6	51206	broad.mit.edu	37	19	55543725	55543725	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55543725G>A	uc002qik.2	-	3	135	c.107C>T	c.(106-108)TCC>TTC	p.S36F	GP6_uc002qil.2_Missense_Mutation_p.S36F|GP6_uc010esq.2_Missense_Mutation_p.S36F|RDH13_uc010esr.1_Intron	NM_016363	NP_057447	Q9HCN6	GPVI_HUMAN	glycoprotein VI (platelet) isoform 2	36	Ig-like C2-type 1.|Extracellular (Potential).				enzyme linked receptor protein signaling pathway|leukocyte migration|platelet activation	integral to plasma membrane	collagen binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.156)	GBM - Glioblastoma multiforme(193;0.0515)		GGGCACCAGGGAGCTGGGCAG	0.697													7	24					0	0	1	0	0
PPP1R12C	54776	broad.mit.edu	37	19	55610167	55610167	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55610167G>A	uc002qix.2	-	6	952	c.936C>T	c.(934-936)GCC>GCT	p.A312A	PPP1R12C_uc010yfs.1_Silent_p.A238A|PPP1R12C_uc002qiy.2_Silent_p.A312A	NM_017607	NP_060077	Q9BZL4	PP12C_HUMAN	protein phosphatase 1, regulatory subunit 12C	312	Potential.					cytoplasm				ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		CCTGTTTCCGGGCCAGTTCCT	0.637													19	51					0	0	1	0	0
TNNT1	7138	broad.mit.edu	37	19	55652271	55652271	+	Missense_Mutation	SNP	C	T	T	rs150477069		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55652271C>T	uc002qjb.3	-	9	456	c.367G>A	c.(367-369)GAA>AAA	p.E123K	TNNT1_uc002qiz.3_Missense_Mutation_p.E53K|TNNT1_uc002qja.3_Missense_Mutation_p.E53K|TNNT1_uc002qjc.3_Missense_Mutation_p.E123K|TNNT1_uc002qje.3_Missense_Mutation_p.E112K|TNNT1_uc002qjd.3_Missense_Mutation_p.E112K|TNNT1_uc002qjf.2_Missense_Mutation_p.E119K	NM_003283	NP_003274	P13805	TNNT1_HUMAN	troponin T1, skeletal, slow isoform a	123					muscle filament sliding|negative regulation of muscle contraction	cytosol|troponin complex	tropomyosin binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.047)		GCCTGACGTTCGCGTTCCTTC	0.547													39	50					0	0	1	0	0
TNNT1	7138	broad.mit.edu	37	19	55652277	55652277	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55652277C>T	uc002qjb.3	-	9	450	c.361G>A	c.(361-363)GAA>AAA	p.E121K	TNNT1_uc002qiz.3_Missense_Mutation_p.E51K|TNNT1_uc002qja.3_Missense_Mutation_p.E51K|TNNT1_uc002qjc.3_Missense_Mutation_p.E121K|TNNT1_uc002qje.3_Missense_Mutation_p.E110K|TNNT1_uc002qjd.3_Missense_Mutation_p.E110K|TNNT1_uc002qjf.2_Missense_Mutation_p.E117K	NM_003283	NP_003274	P13805	TNNT1_HUMAN	troponin T1, skeletal, slow isoform a	121					muscle filament sliding|negative regulation of muscle contraction	cytosol|troponin complex	tropomyosin binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.047)		CGTTCGCGTTCCTTCTCAGTT	0.557													22	65					0	0	1	0	0
TNNI3	7137	broad.mit.edu	37	19	55666111	55666111	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55666111C>T	uc002qjg.3	-	6	370	c.370G>A	c.(370-372)GAG>AAG	p.E124K	TNNI3_uc010yft.1_Missense_Mutation_p.E116K	NM_000363	NP_000354	P19429	TNNI3_HUMAN	troponin I, cardiac	124					cardiac muscle contraction|cellular calcium ion homeostasis|muscle filament sliding|negative regulation of ATPase activity|regulation of systemic arterial blood pressure by ischemic conditions|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|calcium channel inhibitor activity|calcium-dependent protein binding|protein domain specific binding|protein kinase binding|troponin C binding|troponin T binding			lung(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		CGTCCCACCTCCGTGATGTTC	0.582													5	18					0	0	1	0	0
C19orf51	352909	broad.mit.edu	37	19	55672734	55672734	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55672734G>A	uc002qji.1	-	7	750	c.716C>T	c.(715-717)GCC>GTC	p.A239V	C19orf51_uc002qjh.1_Missense_Mutation_p.A54V|C19orf51_uc002qjj.1_Missense_Mutation_p.A286V|C19orf51_uc002qjk.1_Missense_Mutation_p.A185V|C19orf51_uc002qjl.1_Missense_Mutation_p.A307V			Q8N9W5	CS051_HUMAN	RecName: Full=UPF0470 protein C19orf51;	239											0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GAGTTCAAAGGCGACGCCTGT	0.667													8	15					0	0	1	0	0
PTPRH	5794	broad.mit.edu	37	19	55699491	55699491	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55699491C>T	uc002qjq.2	-	13	2503	c.2430G>A	c.(2428-2430)AGG>AGA	p.R810R	PTPRH_uc010esv.2_Silent_p.R632R|uc002qjr.2_5'Flank	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	810	Cytoplasmic (Potential).				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		TCTCATTCTTCCTGACGTGGT	0.572													55	112					0	0	1	0	0
PTPRH	5794	broad.mit.edu	37	19	55710208	55710208	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55710208G>A	uc002qjq.2	-	8	1566	c.1493C>T	c.(1492-1494)CCC>CTC	p.P498L	PTPRH_uc010esv.2_Missense_Mutation_p.P320L|PTPRH_uc002qjs.2_Missense_Mutation_p.P505L	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	498	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		TGGGCCCTGGGGAGCTGTCCA	0.592													7	34					0	0	1	0	0
SAPS1	22870	broad.mit.edu	37	19	55750817	55750817	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55750817G>A	uc002qjw.3	-	15	1949	c.1707C>T	c.(1705-1707)TTC>TTT	p.F569F	SAPS1_uc002qjv.2_Silent_p.F631F	NM_014931	NP_055746	Q9UPN7	PP6R1_HUMAN	SAPS domain family, member 1	569					regulation of phosphoprotein phosphatase activity	cytoplasm	protein phosphatase binding				0		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		CATTGAAGCCGAAGTGGTCAA	0.612													5	19					0	0	1	0	0
SAPS1	22870	broad.mit.edu	37	19	55757032	55757032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55757032G>A	uc002qjw.3	-	3	484	c.242C>T	c.(241-243)GCC>GTC	p.A81V	SAPS1_uc002qjv.2_Missense_Mutation_p.A143V	NM_014931	NP_055746	Q9UPN7	PP6R1_HUMAN	SAPS domain family, member 1	81	Interaction with PPP6C.				regulation of phosphoprotein phosphatase activity	cytoplasm	protein phosphatase binding				0		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		AATCTCGCAGGCCACACTGGG	0.667													8	22					0	0	1	0	0
BRSK1	84446	broad.mit.edu	37	19	55814181	55814181	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55814181C>T	uc002qkg.2	+	10	1251	c.974C>T	c.(973-975)TCA>TTA	p.S325L	BRSK1_uc002qkf.2_Missense_Mutation_p.S341L|BRSK1_uc002qkh.2_Missense_Mutation_p.S20L	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	325	UBA.				establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		AGCATGGCATCACTGGGCTGC	0.682													24	60					0	0	1	0	0
BRSK1	84446	broad.mit.edu	37	19	55815081	55815081	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55815081G>A	uc002qkg.2	+	12	1450	c.1173G>A	c.(1171-1173)GGG>GGA	p.G391G	BRSK1_uc002qkf.2_Silent_p.G407G|BRSK1_uc002qkh.2_Silent_p.G86G	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	391			G -> E (in a metastatic melanoma sample; somatic mutation).		establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity	p.G391E(1)		ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		GCCGTCACGGGAAGCGGCGAC	0.612													30	102					0	0	1	0	0
BRSK1	84446	broad.mit.edu	37	19	55815961	55815961	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55815961G>A	uc002qkg.2	+	14	1667	c.1390G>A	c.(1390-1392)GAG>AAG	p.E464K	BRSK1_uc002qkf.2_Missense_Mutation_p.E480K|BRSK1_uc002qkh.2_Missense_Mutation_p.E159K	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	464					establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		GGCTGGAGATGAGGCTCGAGG	0.672													11	14					0	0	1	0	0
BRSK1	84446	broad.mit.edu	37	19	55823374	55823374	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55823374C>T	uc002qkg.2	+	19	2552	c.2275C>T	c.(2275-2277)CCC>TCC	p.P759S	BRSK1_uc002qkf.2_Missense_Mutation_p.P775S|BRSK1_uc002qkh.2_Missense_Mutation_p.P454S	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	759					establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		GAGCAGCTCTCCCCGCCGAGG	0.741													5	7					0	0	1	0	0
TMEM150B	284417	broad.mit.edu	37	19	55824350	55824350	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55824350G>A	uc010esw.1	-	8	752	c.579C>T	c.(577-579)TTC>TTT	p.F193F	TMEM150B_uc010yfu.1_Silent_p.F193F|TMEM150B_uc010yfv.1_RNA|TMEM150B_uc010yfw.1_RNA	NM_001085488	NP_001078957	A6NC51	T150B_HUMAN	transmembrane protein 150B precursor	193	Helical; (Potential).					integral to membrane					0						CGAAGAGCGCGAACAGCAGCA	0.682													11	34					0	0	1	0	0
TMEM150B	284417	broad.mit.edu	37	19	55832399	55832399	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55832399C>T	uc010esw.1	-	3	179	c.6G>A	c.(4-6)TGG>TGA	p.W2*	TMEM150B_uc010yfu.1_Nonsense_Mutation_p.W2*|TMEM150B_uc010yfv.1_RNA|TMEM150B_uc010yfw.1_RNA|TMEM150B_uc002qki.2_Nonsense_Mutation_p.W2*	NM_001085488	NP_001078957	A6NC51	T150B_HUMAN	transmembrane protein 150B precursor	2						integral to membrane					0						ACAGGTAGCCCCACATGCCGG	0.557													11	19					0	0	1	0	0
IL11	3589	broad.mit.edu	37	19	55877404	55877404	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55877404C>T	uc002qks.1	-	5	707	c.571G>A	c.(571-573)GGA>AGA	p.G191R	FAM71E2_uc002qkr.2_5'Flank|FAM71E2_uc002qkq.2_5'Flank|IL11_uc010yfx.1_Missense_Mutation_p.G112R	NM_000641	NP_000632	P20809	IL11_HUMAN	interleukin 11 precursor	191					B cell differentiation|fat cell differentiation|megakaryocyte differentiation|negative regulation of hormone secretion|platelet activation|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity|growth factor activity|interleukin-11 receptor binding				0	Breast(117;0.191)	Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)	Oprelvekin(DB00038)	AGCAGCAGTCCCCTCACGGCC	0.542													7	11					0	0	1	0	0
IL11	3589	broad.mit.edu	37	19	55879603	55879603	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55879603C>T	uc002qks.1	-	4	540	c.404G>A	c.(403-405)CGG>CAG	p.R135Q	IL11_uc010yfx.1_Missense_Mutation_p.R56Q	NM_000641	NP_000632	P20809	IL11_HUMAN	interleukin 11 precursor	135					B cell differentiation|fat cell differentiation|megakaryocyte differentiation|negative regulation of hormone secretion|platelet activation|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity|growth factor activity|interleukin-11 receptor binding				0	Breast(117;0.191)	Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)	Oprelvekin(DB00038)	GCGCAGCAGCCGGTCCAGTCG	0.687													3	2					0	0	1	0	0
TMEM190	147744	broad.mit.edu	37	19	55889179	55889179	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55889179G>A	uc002qkt.1	+	4	248	c.230G>A	c.(229-231)CGG>CAG	p.R77Q		NM_139172	NP_631911	Q8WZ59	TM190_HUMAN	transmembrane protein 190 precursor	77	Extracellular (Potential).					integral to membrane					0	Breast(117;0.191)		BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GAAAACGTGCGGAGGAAGCAC	0.677													6	47					0	0	1	0	0
TMEM190	147744	broad.mit.edu	37	19	55889357	55889357	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:55889357G>A	uc002qkt.1	+	5	338	c.320G>A	c.(319-321)CGG>CAG	p.R107Q		NM_139172	NP_631911	Q8WZ59	TM190_HUMAN	transmembrane protein 190 precursor	107	Cytoplasmic (Potential).					integral to membrane					0	Breast(117;0.191)		BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GCCAAGCGCCGGGACGTGCTG	0.711													13	35					0	0	1	0	0
SBK2	646643	broad.mit.edu	37	19	56041213	56041213	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56041213G>A	uc010ygc.1	-	3	934	c.934C>T	c.(934-936)CCC>TCC	p.P312S		NM_001101401	NP_001094871	P0C263	SBK2_HUMAN	SH3-binding domain kinase family, member 2	312	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0						CTCCTTCGGGGGTGAGGGTCC	0.751													14	23					0	0	1	0	0
SBK2	646643	broad.mit.edu	37	19	56042656	56042656	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56042656G>A	uc010ygc.1	-	2	310	c.310C>T	c.(310-312)CTG>TTG	p.L104L		NM_001101401	NP_001094871	P0C263	SBK2_HUMAN	SH3-binding domain kinase family, member 2	104	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0						AACTCGTACAGGAAGCCACGG	0.652													6	14					0	0	1	0	0
ZNF579	163033	broad.mit.edu	37	19	56090169	56090169	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56090169G>A	uc002qlh.2	-	2	890	c.837C>T	c.(835-837)TTC>TTT	p.F279F		NM_152600	NP_689813	Q8NAF0	ZN579_HUMAN	zinc finger protein 579	279	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.106)		AGGGCCTGGCGAAGGCCTTGA	0.721													10	27					0	0	1	0	0
ZNF579	163033	broad.mit.edu	37	19	56090216	56090216	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56090216G>A	uc002qlh.2	-	2	843	c.790C>T	c.(790-792)CCG>TCG	p.P264S		NM_152600	NP_689813	Q8NAF0	ZN579_HUMAN	zinc finger protein 579	264					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.106)		GGGCGTGGCGGGGGCCCCCCT	0.721													4	15					0	0	1	0	0
FIZ1	84922	broad.mit.edu	37	19	56109072	56109072	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56109072G>A	uc002qli.3	-	2	250	c.160C>T	c.(160-162)CCG>TCG	p.P54S	FIZ1_uc002qlj.3_Missense_Mutation_p.P54S|ZNF524_uc002qlk.1_5'Flank	NM_032836	NP_116225	Q96SL8	FIZ1_HUMAN	FLT3-interacting zinc finger 1	54	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|protein kinase binding|receptor binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.107)		CCGCAGCGCGGACATGCGTGG	0.657													12	99					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56220307	56220307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56220307C>T	uc002qly.2	-	9	2975	c.2947G>A	c.(2947-2949)GAA>AAA	p.E983K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	983						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		ATCTTGTATTCCTCGTCAATC	0.488													26	83					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56226561	56226561	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56226561G>A	uc002qly.2	-	6	2389	c.2361C>T	c.(2359-2361)TCC>TCT	p.S787S		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	787	LRR 2.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TGGAGTCACAGGAGACAGAGG	0.512													14	38					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56235370	56235370	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56235370G>A	uc002qly.2	-	4	2163	c.2135C>T	c.(2134-2136)CCA>CTA	p.P712L		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	712						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		CTTGCACATTGGATGTTTCAG	0.478													47	68					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56243414	56243414	+	Missense_Mutation	SNP	G	A	A	rs143466064		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56243414G>A	uc002qly.2	-	2	1811	c.1783C>T	c.(1783-1785)CGC>TGC	p.R595C		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	595						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		ACACACATGCGAAGTGTCGTT	0.393													15	63					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56243490	56243490	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56243490G>A	uc002qly.2	-	2	1735	c.1707C>T	c.(1705-1707)TTC>TTT	p.F569F		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	569						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		CAATATAAATGAAAACTTCTT	0.343													18	45					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56243668	56243668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56243668G>A	uc002qly.2	-	2	1557	c.1529C>T	c.(1528-1530)TCC>TTC	p.S510F		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	510						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		AAAACCAAAGGAGGTCTCCAG	0.443													47	108					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56244007	56244007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56244007G>A	uc002qly.2	-	2	1218	c.1190C>T	c.(1189-1191)GCT>GTT	p.A397V		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	397	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TGCAGCCAAAGCACACAGGCT	0.453													56	127					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56244352	56244352	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56244352T>C	uc002qly.2	-	2	873	c.845A>G	c.(844-846)AAA>AGA	p.K282R		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	282	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		AAAATAGTGTTTTTGCATAGC	0.403													28	71					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56297165	56297165	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56297165C>T	uc010ygf.1	-	12	3639	c.2928G>A	c.(2926-2928)TTG>TTA	p.L976L	NLRP11_uc002qlz.2_Silent_p.L823L|NLRP11_uc002qmb.2_Silent_p.L877L|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	976							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ACAGAAAGATCAAACTGGGTT	0.423													32	82					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56300731	56300731	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56300731G>A	uc010ygf.1	-	10	3259	c.2548C>T	c.(2548-2550)CAA>TAA	p.Q850*	NLRP11_uc002qlz.2_Nonsense_Mutation_p.Q697*|NLRP11_uc002qmb.2_Nonsense_Mutation_p.Q751*|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	850							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GCAATATATTGACAGATATCG	0.418													38	143					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56320147	56320147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56320147C>T	uc010ygf.1	-	5	2540	c.1829G>A	c.(1828-1830)AGG>AAG	p.R610K	NLRP11_uc002qlz.2_Missense_Mutation_p.R511K|NLRP11_uc002qmb.2_Missense_Mutation_p.R511K|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	610	LRR 1.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AGCAGTTGGCCTTATAAGTGG	0.408													37	102					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56320560	56320560	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56320560G>A	uc010ygf.1	-	5	2127	c.1416C>T	c.(1414-1416)CCC>CCT	p.P472P	NLRP11_uc002qlz.2_Silent_p.P373P|NLRP11_uc002qmb.2_Silent_p.P373P|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	472							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TGCTGCCTGAGGGGATCAGAT	0.398													32	72					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56320980	56320980	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56320980G>A	uc010ygf.1	-	5	1707	c.996C>T	c.(994-996)CTC>CTT	p.L332L	NLRP11_uc002qlz.2_Silent_p.L233L|NLRP11_uc002qmb.2_Silent_p.L233L|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	332	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ACAGACCCACGAGTATTTCAT	0.527													9	55					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56321602	56321602	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56321602G>A	uc010ygf.1	-	5	1085	c.374C>T	c.(373-375)TCG>TTG	p.S125L	NLRP11_uc002qlz.2_Missense_Mutation_p.S26L|NLRP11_uc002qmb.2_Missense_Mutation_p.S26L|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	125							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CACATCTGACGAAACGTCACG	0.383													23	46					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56369377	56369377	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56369377C>T	uc002qmd.3	+	3	1040	c.618C>T	c.(616-618)TCC>TCT	p.S206S	NLRP4_uc002qmf.2_Silent_p.S131S|NLRP4_uc010etf.2_Silent_p.S37S	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	206	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ACTTGATTTCCAGAGAGTGGC	0.532													12	137					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56369416	56369416	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56369416C>T	uc002qmd.3	+	3	1079	c.657C>T	c.(655-657)ATC>ATT	p.I219I	NLRP4_uc002qmf.2_Silent_p.I144I|NLRP4_uc010etf.2_Silent_p.I50I	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	219	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TAACAGAGATCGTGTCTCAAC	0.537													38	84					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56369443	56369443	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56369443C>T	uc002qmd.3	+	3	1106	c.684C>T	c.(682-684)TTC>TTT	p.F228F	NLRP4_uc002qmf.2_Silent_p.F153F|NLRP4_uc010etf.2_Silent_p.F59F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	228	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GACTCTTGTTCGTCATCGACA	0.552													33	81					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56369660	56369660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56369660G>A	uc002qmd.3	+	3	1323	c.901G>A	c.(901-903)GGA>AGA	p.G301R	NLRP4_uc002qmf.2_Missense_Mutation_p.G226R|NLRP4_uc010etf.2_Missense_Mutation_p.G132R	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	301	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCAGCCCCGGGGATTCAACGA	0.512													21	66					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56369669	56369669	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56369669G>A	uc002qmd.3	+	3	1332	c.910G>A	c.(910-912)GAG>AAG	p.E304K	NLRP4_uc002qmf.2_Missense_Mutation_p.E229K|NLRP4_uc010etf.2_Missense_Mutation_p.E135K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	304	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GGGATTCAACGAGAGTGATAG	0.507													25	63					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56370026	56370026	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56370026G>A	uc002qmd.3	+	3	1689	c.1267G>A	c.(1267-1269)GGG>AGG	p.G423R	NLRP4_uc002qmf.2_Missense_Mutation_p.G348R|NLRP4_uc010etf.2_Missense_Mutation_p.G254R	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	423	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCGGAGAAATGGGGTTGTTGA	0.562													53	99					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56370494	56370494	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56370494C>T	uc002qmd.3	+	3	2157	c.1735C>T	c.(1735-1737)CAT>TAT	p.H579Y	NLRP4_uc002qmf.2_Missense_Mutation_p.H504Y|NLRP4_uc010etf.2_Missense_Mutation_p.H410Y	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	579							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AGCTAACTTTCATATTATTGA	0.428													27	61					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56372893	56372893	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56372893C>T	uc002qmd.3	+	4	2420	c.1998C>T	c.(1996-1998)AGC>AGT	p.S666S	NLRP4_uc002qmf.2_Silent_p.S591S|NLRP4_uc010etf.2_Silent_p.S497S	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	666							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GGCATCCCAGCTGTCGCCTTC	0.557													24	58					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56373451	56373451	+	Silent	SNP	G	A	A	rs148970920		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56373451G>A	uc002qmd.3	+	5	2534	c.2112G>A	c.(2110-2112)ACG>ACA	p.T704T	NLRP4_uc002qmf.2_Silent_p.T629T|NLRP4_uc010etf.2_Silent_p.T535T	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	704	LRR 2.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TCACCCTCACGAAACTCTCTC	0.463													45	94					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56382215	56382215	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56382215G>A	uc002qmd.3	+	7	2799	c.2377G>A	c.(2377-2379)GAG>AAG	p.E793K	NLRP4_uc002qmf.2_Missense_Mutation_p.E718K|NLRP4_uc010etf.2_Missense_Mutation_p.E568K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	793							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCACCTCAGCGAGCAGTGCTG	0.493													21	55					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56392835	56392835	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56392835G>A	uc002qmd.3	+	10	3290	c.2868_splice	c.e10-1	p.G956_splice	NLRP4_uc002qmf.2_Splice_Site_p.G881_splice|NLRP4_uc010etf.2_Splice_Site_p.G731_splice	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4								ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TATTTTACCAGGCTGAGAAAA	0.413													7	24					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56392911	56392911	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56392911C>T	uc002qmd.3	+	10	3365	c.2943C>T	c.(2941-2943)ACC>ACT	p.T981T	NLRP4_uc002qmf.2_Silent_p.T906T|NLRP4_uc010etf.2_Silent_p.T756T	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	981							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CTAACCTGACCATCACAGACG	0.478													18	40					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56416316	56416316	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56416316C>T	uc010ygg.1	-	8	2635	c.2610G>A	c.(2608-2610)GAG>GAA	p.E870E		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	870							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		ACTCCAGTCTCTCTAAGGCAC	0.413													21	39					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56419205	56419205	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56419205C>T	uc010ygg.1	-	7	2425	c.2400G>A	c.(2398-2400)CTG>CTA	p.L800L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	800	LRR 2.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CTTTAAGAATCAGGGGGACAG	0.498													40	87					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56423159	56423159	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56423159G>A	uc010ygg.1	-	5	2049	c.2024C>T	c.(2023-2025)TCA>TTA	p.S675L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	675							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TAGGCAAAATGAAGAAGCTTG	0.403													16	171					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56423265	56423265	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56423265G>A	uc010ygg.1	-	5	1943	c.1918C>T	c.(1918-1920)CAC>TAC	p.H640Y		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	640							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TGTAGGCAGTGAAAAAGTCGT	0.423													40	79					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56423271	56423271	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56423271G>A	uc010ygg.1	-	5	1937	c.1912C>T	c.(1912-1914)CTT>TTT	p.L638F		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	638							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CAGTGAAAAAGTCGTAGAATG	0.418													32	81					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56423451	56423451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56423451C>T	uc010ygg.1	-	5	1757	c.1732G>A	c.(1732-1734)GAA>AAA	p.E578K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	578							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CAGTAGGCTTCTTTGTCAAGC	0.418													43	108					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56423464	56423464	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56423464G>A	uc010ygg.1	-	5	1744	c.1719C>T	c.(1717-1719)GTC>GTT	p.V573V		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	573							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TGTCAAGCAAGACGTGTTGCA	0.418													40	109					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56424057	56424057	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56424057C>T	uc010ygg.1	-	5	1151	c.1126G>A	c.(1126-1128)GTG>ATG	p.V376M		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	376	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CATGGATTCACTAATGAGGCC	0.423													45	94					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56424120	56424120	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56424120G>A	uc010ygg.1	-	5	1088	c.1063C>T	c.(1063-1065)CCC>TCC	p.P355S		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	355	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GTAGCCAGGGGAACCAATTCT	0.473													35	84					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56424299	56424299	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56424299G>A	uc010ygg.1	-	5	909	c.884C>T	c.(883-885)CCC>CTC	p.P295L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	295	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CTCTTCAATGGGGGCATCAAA	0.398													26	66					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56424593	56424593	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56424593C>T	uc010ygg.1	-	5	615	c.590G>A	c.(589-591)TGG>TAG	p.W197*		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	197							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GTCTTTAGGCCAACTGATGTT	0.488													12	168					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56424653	56424653	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56424653C>T	uc010ygg.1	-	5	555	c.530G>A	c.(529-531)AGA>AAA	p.R177K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	177							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GTATTTTCTTCTGTGGTCTAG	0.413													52	108					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56436006	56436006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56436006C>T	uc010ygg.1	-	3	432	c.407G>A	c.(406-408)GGA>GAA	p.G136E		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	136							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		ATCTTGGCATCCCTGGGTCTG	0.433													32	90					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56443363	56443363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56443363C>T	uc010ygg.1	-	1	340	c.315G>A	c.(313-315)ATG>ATA	p.M105I		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	105	DAPIN.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TCTCACCTTTCATCTCGGCTC	0.532													14	44					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56459573	56459573	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56459573C>T	uc002qmh.2	+	1	376	c.305C>T	c.(304-306)TCG>TTG	p.S102L	NLRP8_uc010etg.2_Missense_Mutation_p.S102L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	102	DAPIN.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GATGTGACTTCGAACATCTTT	0.507													23	41					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466553	56466553	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56466553G>A	uc002qmh.2	+	3	1200	c.1129G>A	c.(1129-1131)GAC>AAC	p.D377N	NLRP8_uc010etg.2_Missense_Mutation_p.D377N	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	377	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AGAGGAGGGAGACCAAGTCTT	0.478													27	103					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466838	56466838	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56466838G>A	uc002qmh.2	+	3	1485	c.1414G>A	c.(1414-1416)GAA>AAA	p.E472K	NLRP8_uc010etg.2_Missense_Mutation_p.E472K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	472	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GTTAGGTAAAGAAGATCTTGA	0.498													42	110					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466958	56466958	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56466958G>A	uc002qmh.2	+	3	1605	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	NLRP8_uc010etg.2_Missense_Mutation_p.E512K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	512	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GACTTTTCAGGAATTTTTTGC	0.468													64	209					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466993	56466993	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56466993C>T	uc002qmh.2	+	3	1640	c.1569C>T	c.(1567-1569)TTC>TTT	p.F523F	NLRP8_uc010etg.2_Silent_p.F523F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	523	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTCTCTGTTTCCCACAAAGAC	0.443													61	176					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56467057	56467057	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56467057C>T	uc002qmh.2	+	3	1704	c.1633C>T	c.(1633-1635)CCC>TCC	p.P545S	NLRP8_uc010etg.2_Missense_Mutation_p.P545S	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	545						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GATAGCGAGTCCCAGAGGAAG	0.458													43	85					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56467449	56467449	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56467449C>T	uc002qmh.2	+	3	2096	c.2025C>T	c.(2023-2025)AGC>AGT	p.S675S	NLRP8_uc010etg.2_Silent_p.S675S	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	675						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCAGCTCCAGCTCCCATCCTG	0.547													28	78					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56477606	56477606	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56477606G>A	uc002qmh.2	+	5	2312	c.2241G>A	c.(2239-2241)TTG>TTA	p.L747L	NLRP8_uc010etg.2_Silent_p.L747L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	747						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GCACCATGTTGAACCAGGACT	0.493													55	123					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56485099	56485099	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56485099G>A	uc002qmh.2	+	7	2687	c.2616G>A	c.(2614-2616)CTG>CTA	p.L872L	NLRP8_uc010etg.2_Silent_p.L853L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	872	LRR 4.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TGACCCACCTGAGCTTGGCAG	0.517													70	175					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56490832	56490832	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56490832G>A	uc002qmh.2	+	9	3020	c.2949G>A	c.(2947-2949)CTG>CTA	p.L983L	NLRP8_uc010etg.2_Silent_p.L964L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	983	LRR 6.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		ACCAACATCTGAGACATCTGG	0.493													50	112					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56490890	56490890	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56490890G>A	uc002qmh.2	+	9	3078	c.3007G>A	c.(3007-3009)GAG>AAG	p.E1003K	NLRP8_uc010etg.2_Missense_Mutation_p.E984K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	1003	LRR 6.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GACCTTGTGCGAGGCCTTCTC	0.478													42	106					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56520202	56520202	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56520202G>A	uc002qmj.2	+	3	491	c.491G>A	c.(490-492)AGC>AAC	p.S164N	NLRP5_uc002qmi.2_Missense_Mutation_p.S164N	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	164						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CAAGGACCAAGCAAGGAAAAA	0.318													4	19					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56520206	56520206	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56520206G>A	uc002qmj.2	+	3	495	c.495G>A	c.(493-495)AAG>AAA	p.K165K	NLRP5_uc002qmi.2_Silent_p.K165K	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	165						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GACCAAGCAAGGAAAAAGTGC	0.313													4	18					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56538970	56538970	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56538970G>A	uc002qmj.2	+	7	1371	c.1371G>A	c.(1369-1371)GCG>GCA	p.A457A	NLRP5_uc002qmi.2_Silent_p.A438A	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	457	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GGTTGCGTGCGATCATGAACA	0.597													9	27					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56539571	56539571	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56539571C>T	uc002qmj.2	+	7	1972	c.1972C>T	c.(1972-1974)CCC>TCC	p.P658S	NLRP5_uc002qmi.2_Missense_Mutation_p.P639S	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	658						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTGTCCCGTTCCCCTGGGGGT	0.587													31	79					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56544947	56544947	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56544947C>T	uc002qmj.2	+	9	2487	c.2487C>T	c.(2485-2487)CTC>CTT	p.L829L	NLRP5_uc002qmi.2_Silent_p.L810L	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	829	LRR 4.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TGCAGCACCTCTGGAGAATCG	0.488													65	131					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56545017	56545017	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56545017G>A	uc002qmj.2	+	9	2557	c.2557G>A	c.(2557-2559)GAT>AAT	p.D853N	NLRP5_uc002qmi.2_Missense_Mutation_p.D834N	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	853	LRR 5.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GAAGGAAGAGGATGTAAGGAT	0.483													74	199					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56552397	56552397	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56552397G>A	uc002qmj.2	+	11	2896	c.2896G>A	c.(2896-2898)GAA>AAA	p.E966K	NLRP5_uc002qmi.2_Missense_Mutation_p.E947K	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	966	LRR 8.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CCTGGGGAACGAAGGTGTAAA	0.567													51	142					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56565064	56565064	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56565064G>A	uc002qmj.2	+	13	3189	c.3189G>A	c.(3187-3189)AGG>AGA	p.R1063R	NLRP5_uc002qmi.2_Silent_p.R1044R	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1063						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TGATCTCGAGGAGCAGACACC	0.572													13	41					0	0	1	0	0
GALP	85569	broad.mit.edu	37	19	56691959	56691959	+	Missense_Mutation	SNP	G	A	A	rs149853638		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56691959G>A	uc002qmo.1	+	3	174	c.92G>A	c.(91-93)CGA>CAA	p.R31Q	GALP_uc010eti.2_Intron	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	31					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		ATCCAGGGACGAGGAGGCTGG	0.607													10	54					0	0	1	0	0
GALP	85569	broad.mit.edu	37	19	56696615	56696615	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56696615G>A	uc002qmo.1	+	6	409	c.327G>A	c.(325-327)AAG>AAA	p.K109K	GALP_uc010eti.2_3'UTR	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	109					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		AAATTCCCAAGGAGGAAGATG	0.398													15	39					0	0	1	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701424	56701424	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56701424G>A	uc010ygh.1	-	4	1260	c.1260C>T	c.(1258-1260)TTC>TTT	p.F420F		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	420	C2H2-type 3.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ACTCGTGGGCGAACCGCTTTT	0.567													20	55					0	0	1	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701623	56701623	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56701623G>A	uc010ygh.1	-	4	1061	c.1061C>T	c.(1060-1062)CCC>CTC	p.P354L		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	354					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ACATGCAAAGGGCGGCAGGGC	0.527													29	82					0	0	1	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701687	56701687	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56701687G>A	uc010ygh.1	-	4	997	c.997C>T	c.(997-999)CAT>TAT	p.H333Y		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	333					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CCTGGGGAATGAACTGGATTG	0.547													37	104					0	0	1	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701922	56701923	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56701922_56701923CC>TT	uc010ygh.1	-	4	761_762	c.761_762GG>AA	c.(760-762)GGG>GAA	p.G254E		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	254					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GGGGTTCCTTCCCCTCCTTTGC	0.485													37	81					0	0	1	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733072	56733072	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56733072G>A	uc002qmq.2	-	5	1529	c.1363C>T	c.(1363-1365)CTG>TTG	p.L455L	ZSCAN5A_uc010ygi.1_Silent_p.L338L|ZSCAN5A_uc002qmr.2_Silent_p.L455L|ZSCAN5A_uc002qms.1_Silent_p.L454L	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	455	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TGCTCCTTCAGGCTCCCCCTG	0.507													19	49					0	0	1	0	0
ZNF583	147949	broad.mit.edu	37	19	56934979	56934979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56934979C>T	uc010ygl.1	+	5	1117	c.952C>T	c.(952-954)CAT>TAT	p.H318Y	ZNF583_uc002qnc.2_Missense_Mutation_p.H318Y|ZNF583_uc010ygm.1_Missense_Mutation_p.H318Y	NM_001159860	NP_001153332	Q96ND8	ZN583_HUMAN	zinc finger protein 583	318	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0564)		TCAGAGAGTTCATACTGGAGA	0.413													18	133					0	0	1	0	0
ZNF583	147949	broad.mit.edu	37	19	56935685	56935685	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56935685C>T	uc010ygl.1	+	5	1823	c.1658C>T	c.(1657-1659)CCC>CTC	p.P553L	ZNF583_uc002qnc.2_Missense_Mutation_p.P553L|ZNF583_uc010ygm.1_Missense_Mutation_p.P553L	NM_001159860	NP_001153332	Q96ND8	ZN583_HUMAN	zinc finger protein 583	553					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0564)		ctttcctctccctcaccctcc	0.134													13	23					0	0	1	0	0
ZNF667	63934	broad.mit.edu	37	19	56952689	56952689	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56952689C>T	uc002qnd.2	-	5	1837	c.1675G>A	c.(1675-1677)GAA>AAA	p.E559K	ZNF667_uc010etl.2_Missense_Mutation_p.E341K|ZNF667_uc002qne.2_Missense_Mutation_p.E559K|ZNF667_uc010etm.2_Missense_Mutation_p.E502K	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	559	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		TTCCCACATTCATTACATTCA	0.408													23	115					0	0	1	0	0
ZNF667	63934	broad.mit.edu	37	19	56953494	56953494	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:56953494G>A	uc002qnd.2	-	5	1032	c.870C>T	c.(868-870)TTC>TTT	p.F290F	ZNF667_uc010etl.2_Silent_p.F72F|ZNF667_uc002qne.2_Silent_p.F290F|ZNF667_uc010etm.2_Silent_p.F233F	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	290	C2H2-type 5; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		ATTTCTTTTTGAAGCCTCTCC	0.358													13	135					0	0	1	0	0
ZFP28	140612	broad.mit.edu	37	19	57065579	57065579	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57065579C>T	uc002qnj.2	+	8	1496	c.1425C>T	c.(1423-1425)CCC>CCT	p.P475P	uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	475					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		GCAAGAAGCCCTATGAGTGCA	0.463													22	64					0	0	1	0	0
ZNF470	388566	broad.mit.edu	37	19	57088523	57088523	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57088523C>T	uc002qnl.3	+	6	1402	c.726C>T	c.(724-726)ACC>ACT	p.T242T	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	242	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		AAATCTCAACCCTTACTCTTC	0.373													21	67					0	0	1	0	0
ZNF470	388566	broad.mit.edu	37	19	57088760	57088760	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57088760C>T	uc002qnl.3	+	6	1639	c.963C>T	c.(961-963)TTC>TTT	p.F321F	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	321	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		ATAAAGCATTCAGCCAGCTTG	0.448													27	51					0	0	1	0	0
ZNF470	388566	broad.mit.edu	37	19	57089547	57089547	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57089547C>T	uc002qnl.3	+	6	2426	c.1750C>T	c.(1750-1752)CAG>TAG	p.Q584*	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	584	C2H2-type 13.			Q -> P (in Ref. 1; AAS64219).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		TGTTCAACATCAGAGACTCCA	0.453													34	104					0	0	1	0	0
ZNF71	58491	broad.mit.edu	37	19	57133340	57133340	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57133340C>T	uc002qnm.3	+	3	923	c.685C>T	c.(685-687)CTC>TTC	p.L229F		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	229	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		GACTTCCTCTCTCACCCAGCA	0.642													19	55					0	0	1	0	0
ZNF835	90485	broad.mit.edu	37	19	57175471	57175471	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57175471C>T	uc010ygo.1	-	2	1162	c.1162G>A	c.(1162-1164)GAC>AAC	p.D388N	ZNF835_uc010ygn.1_Missense_Mutation_p.D366N	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						TTGCCGCAGTCGTGGCAGGGG	0.701													12	14					0	0	1	0	0
ZNF835	90485	broad.mit.edu	37	19	57176031	57176031	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57176031G>A	uc010ygo.1	-	2	602	c.602C>T	c.(601-603)TCG>TTG	p.S201L	ZNF835_uc010ygn.1_Missense_Mutation_p.S179L	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						CGCCAGGTACGAGCCCTGGCT	0.706													9	20					0	0	1	0	0
ZNF835	90485	broad.mit.edu	37	19	57176210	57176210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57176210G>A	uc010ygo.1	-	2	423	c.423C>T	c.(421-423)TTC>TTT	p.F141F	ZNF835_uc010ygn.1_Silent_p.F119F	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						AACAGTAGCTGAAGGCCTTCC	0.632													12	123					0	0	1	0	0
ZNF835	90485	broad.mit.edu	37	19	57176445	57176445	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57176445G>A	uc010ygo.1	-	2	188	c.188C>T	c.(187-189)GCC>GTC	p.A63V	ZNF835_uc010ygn.1_Missense_Mutation_p.A41V	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						TCCCTTGCAGGCCACGGCCTC	0.597													16	69					0	0	1	0	0
ZNF835	90485	broad.mit.edu	37	19	57176574	57176574	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57176574C>T	uc010ygo.1	-	2	59	c.59G>A	c.(58-60)GGA>GAA	p.G20E	ZNF835_uc010ygn.1_5'UTR	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						CATCCTCGATCCCTGGGCTGC	0.488													16	40					0	0	1	0	0
ZIM2	23619	broad.mit.edu	37	19	57286838	57286838	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57286838G>A	uc002qnr.2	-	11	1184	c.802C>T	c.(802-804)CCT>TCT	p.P268S	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Missense_Mutation_p.P64S|ZIM2_uc010ygr.1_Missense_Mutation_p.P64S|ZIM2_uc002qnq.2_Missense_Mutation_p.P268S|ZIM2_uc010etp.2_Missense_Mutation_p.P268S|ZIM2_uc010ygs.1_Missense_Mutation_p.P268S	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	268					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		ATTGTTATAGGAGTCAAAAGT	0.443													29	92					0	0	1	0	0
ZIM2	23619	broad.mit.edu	37	19	57290806	57290806	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57290806G>A	uc002qnr.2	-	10	1063	c.681C>T	c.(679-681)CGC>CGT	p.R227R	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Silent_p.R23R|ZIM2_uc010ygr.1_Silent_p.R23R|ZIM2_uc002qnq.2_Silent_p.R227R|ZIM2_uc010etp.2_Silent_p.R227R|ZIM2_uc010ygs.1_Silent_p.R227R	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	227	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		CCTCTTCCAGGCGTGAGATAA	0.507													32	97					0	0	1	0	0
ZIM2	23619	broad.mit.edu	37	19	57293412	57293412	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57293412G>A	uc002qnr.2	-	9	937	c.555C>T	c.(553-555)TTC>TTT	p.F185F	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnq.2_Silent_p.F185F|ZIM2_uc010etp.2_Silent_p.F185F|ZIM2_uc010ygs.1_Silent_p.F185F	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	185	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		CCTCTGGGCTGAAGTCCACAA	0.507													51	119					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57325048	57325048	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57325048C>T	uc002qnu.2	-	7	5113	c.4762G>A	c.(4762-4764)GGC>AGC	p.G1588S	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.G1559S|PEG3_uc002qnv.2_Missense_Mutation_p.G1588S|PEG3_uc002qnw.2_Missense_Mutation_p.G1464S|PEG3_uc002qnx.2_Missense_Mutation_p.G1462S|PEG3_uc010etr.2_Missense_Mutation_p.G1588S|PEG3AS_uc010ets.1_RNA	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1588					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TGCCCTCAGCCAGTGTGGGTA	0.493													10	41					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57325912	57325912	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57325912G>A	uc002qnu.2	-	7	4249	c.3898C>T	c.(3898-3900)CAC>TAC	p.H1300Y	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.H1271Y|PEG3_uc002qnv.2_Missense_Mutation_p.H1300Y|PEG3_uc002qnw.2_Missense_Mutation_p.H1176Y|PEG3_uc002qnx.2_Missense_Mutation_p.H1174Y|PEG3_uc010etr.2_Missense_Mutation_p.H1300Y	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1300	C2H2-type 9.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		ACAGTTACGTGATCTGCAAGT	0.458													21	69					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57326923	57326923	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57326923G>A	uc002qnu.2	-	7	3238	c.2887C>T	c.(2887-2889)CGC>TGC	p.R963C	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.R934C|PEG3_uc002qnv.2_Missense_Mutation_p.R963C|PEG3_uc002qnw.2_Missense_Mutation_p.R839C|PEG3_uc002qnx.2_Missense_Mutation_p.R837C|PEG3_uc010etr.2_Missense_Mutation_p.R963C	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	963					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CCTCGAGGGCGAAATGTTTGT	0.473													60	163					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57327454	57327454	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57327454C>T	uc002qnu.2	-	7	2707	c.2356G>A	c.(2356-2358)GAA>AAA	p.E786K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E757K|PEG3_uc002qnv.2_Missense_Mutation_p.E786K|PEG3_uc002qnw.2_Missense_Mutation_p.E662K|PEG3_uc002qnx.2_Missense_Mutation_p.E660K|PEG3_uc010etr.2_Missense_Mutation_p.E786K	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	786					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TTCTGAGCTTCCACAGAGGCT	0.433													85	204					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57327514	57327514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57327514C>T	uc002qnu.2	-	7	2647	c.2296G>A	c.(2296-2298)GAA>AAA	p.E766K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E737K|PEG3_uc002qnv.2_Missense_Mutation_p.E766K|PEG3_uc002qnw.2_Missense_Mutation_p.E642K|PEG3_uc002qnx.2_Missense_Mutation_p.E640K|PEG3_uc010etr.2_Missense_Mutation_p.E766K	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	766					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TAGACATTTTCCTTAGTGGGA	0.428													57	218					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57327538	57327538	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57327538C>T	uc002qnu.2	-	7	2623	c.2272G>A	c.(2272-2274)GAA>AAA	p.E758K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E729K|PEG3_uc002qnv.2_Missense_Mutation_p.E758K|PEG3_uc002qnw.2_Missense_Mutation_p.E634K|PEG3_uc002qnx.2_Missense_Mutation_p.E632K|PEG3_uc010etr.2_Missense_Mutation_p.E758K	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	758					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TTCTGGTTTTCATAGGGGTTA	0.413													75	194					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57327956	57327956	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57327956C>T	uc002qnu.2	-	7	2205	c.1854G>A	c.(1852-1854)CAG>CAA	p.Q618Q	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.Q589Q|PEG3_uc002qnv.2_Silent_p.Q618Q|PEG3_uc002qnw.2_Silent_p.Q494Q|PEG3_uc002qnx.2_Silent_p.Q492Q|PEG3_uc010etr.2_Silent_p.Q618Q	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	618					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CATACATTTTCTGAAACTCAT	0.363													15	38					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57328431	57328431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57328431G>A	uc002qnu.2	-	7	1730	c.1379C>T	c.(1378-1380)TCG>TTG	p.S460L	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.S431L|PEG3_uc002qnv.2_Missense_Mutation_p.S460L|PEG3_uc002qnw.2_Missense_Mutation_p.S336L|PEG3_uc002qnx.2_Missense_Mutation_p.S334L|PEG3_uc010etr.2_Missense_Mutation_p.S460L	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	460	C2H2-type 1.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GACACTGAACGACCTCCCACA	0.493													65	134					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57328824	57328824	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57328824C>T	uc002qnu.2	-	7	1337	c.986G>A	c.(985-987)GGA>GAA	p.G329E	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.G300E|PEG3_uc002qnv.2_Missense_Mutation_p.G329E|PEG3_uc002qnw.2_Missense_Mutation_p.G205E|PEG3_uc002qnx.2_Missense_Mutation_p.G203E|PEG3_uc010etr.2_Missense_Mutation_p.G329E	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	329					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.G329R(1)		ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CCTTGCTCTTCCCGATTTGGA	0.468													15	68					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57330048	57330049	+	Nonsense_Mutation	DNP	AC	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57330048_57330049AC>TA	uc002qnu.2	-	5	1042_1043	c.691_692GT>TA	c.(691-693)GTG>TAG	p.V231*	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_Nonsense_Mutation_p.V106*|ZIM2_uc002qnq.2_Nonsense_Mutation_p.V106*|ZIM2_uc010etp.2_Nonsense_Mutation_p.V106*|ZIM2_uc010ygs.1_Nonsense_Mutation_p.V106*|PEG3_uc002qnt.2_Nonsense_Mutation_p.V232*|PEG3_uc002qnv.2_Nonsense_Mutation_p.V231*|PEG3_uc002qnw.2_Nonsense_Mutation_p.V106*|PEG3_uc002qnx.2_Nonsense_Mutation_p.V105*|PEG3_uc010etr.2_Nonsense_Mutation_p.V231*	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	231					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GAGGTCCACCACATTTTGGTAT	0.48													30	84					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57333046	57333046	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57333046G>A	uc002qnu.2	-	4	993	c.642C>T	c.(640-642)GAC>GAT	p.D214D	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_Silent_p.D89D|ZIM2_uc002qnq.2_Silent_p.D89D|ZIM2_uc010etp.2_Silent_p.D89D|ZIM2_uc010ygs.1_Silent_p.D89D|PEG3_uc002qnt.2_Silent_p.D215D|PEG3_uc002qnv.2_Silent_p.D214D|PEG3_uc002qnw.2_Silent_p.D89D|PEG3_uc002qnx.2_Silent_p.D88D|PEG3_uc010etr.2_Silent_p.D214D	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	214					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		AAGCCCTGGAGTCCCTGTCGT	0.507													64	148					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57335885	57335885	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57335885G>A	uc002qnu.2	-	1	490	c.139C>T	c.(139-141)CAG>TAG	p.Q47*	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Nonsense_Mutation_p.Q47*|PEG3_uc002qnv.2_Nonsense_Mutation_p.Q47*|PEG3_uc002qnw.2_Intron|PEG3_uc002qnx.2_Intron|PEG3_uc010etr.2_Nonsense_Mutation_p.Q47*	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	47	SCAN box.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CGAAACCTCTGATGAAAAAAC	0.502													13	56					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57335973	57335973	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57335973G>A	uc002qnu.2	-	1	402	c.51C>T	c.(49-51)GCC>GCT	p.A17A	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.A17A|PEG3_uc002qnv.2_Silent_p.A17A|PEG3_uc002qnw.2_Intron|PEG3_uc002qnx.2_Intron|PEG3_uc010etr.2_Silent_p.A17A	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	17					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		ACAGATTTGGGGCCCAGGACT	0.453													32	73					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57640386	57640386	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57640386G>A	uc002qny.2	+	4	699	c.343G>A	c.(343-345)GAT>AAT	p.D115N		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	115					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GAAATCTGATGATGATTGGAG	0.353													20	69					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57641153	57641153	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57641153G>A	uc002qny.2	+	4	1466	c.1110G>A	c.(1108-1110)CAG>CAA	p.Q370Q		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	370					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GCAACATGCAGAATGATGCTC	0.358													35	85					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57641207	57641207	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57641207G>A	uc002qny.2	+	4	1520	c.1164G>A	c.(1162-1164)ATG>ATA	p.M388I		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	388					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AAGAAGACATGGAAAAATTAA	0.378													34	75					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57641670	57641670	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57641670G>A	uc002qny.2	+	4	1983	c.1627G>A	c.(1627-1629)GAA>AAA	p.E543K		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	543					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTATTGCAATGAAAGCACCAA	0.418													77	171					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57642007	57642007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57642007G>A	uc002qny.2	+	4	2320	c.1964G>A	c.(1963-1965)GGA>GAA	p.G655E		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	655					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATGGACCAGGGAGACATTTCT	0.493													14	39					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57642421	57642421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57642421G>A	uc002qny.2	+	4	2734	c.2378G>A	c.(2377-2379)GGA>GAA	p.G793E		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	793					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GACAACCCAGGAAACAAAAAC	0.468													6	27					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57642485	57642485	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57642485G>A	uc002qny.2	+	4	2798	c.2442G>A	c.(2440-2442)GTG>GTA	p.V814V		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	814					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CAAGAAACGTGAAGATGGGGG	0.478													16	29					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57642599	57642599	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57642599C>T	uc002qny.2	+	4	2912	c.2556C>T	c.(2554-2556)GCC>GCT	p.A852A		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	852					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGAAGCAGGCCTGGTTCACAT	0.468													18	52					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57646362	57646362	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57646362C>T	uc002qnz.1	-	5	1729	c.1343G>A	c.(1342-1344)GGA>GAA	p.G448E		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	448	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTCAGAACATCCATAAGGTTT	0.408													51	165					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57646505	57646505	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57646505G>A	uc002qnz.1	-	5	1586	c.1200C>T	c.(1198-1200)TTC>TTT	p.F400F		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	400	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ACTTCTGAAAGAAGGCTTTTC	0.378													69	170					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57646757	57646757	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57646757G>A	uc002qnz.1	-	5	1334	c.948C>T	c.(946-948)TTC>TTT	p.F316F		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	316	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ACTTGTAAATGAAAGCCTTTC	0.403													52	128					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57646787	57646787	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57646787G>A	uc002qnz.1	-	5	1304	c.918C>T	c.(916-918)CCC>CCT	p.P306P		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	306					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TACATTGAAAGGGTTTTTGTC	0.383													45	149					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57648289	57648289	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57648289T>A	uc002qnz.1	-	4	579	c.193A>T	c.(193-195)AAG>TAG	p.K65*		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	65	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CATGGCTCCTTTCCTTGTTCC	0.478													38	92					0	0	1	0	0
DUXA	503835	broad.mit.edu	37	19	57666645	57666645	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57666645C>T	uc002qoa.1	-	5	579	c.534G>A	c.(532-534)GAG>GAA	p.E178E		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	178						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		CTTGCAGTCCCTCAGGAATCT	0.498													5	81					0	0	1	0	0
DUXA	503835	broad.mit.edu	37	19	57670611	57670611	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57670611G>A	uc002qoa.1	-	3	261	c.216C>T	c.(214-216)TTC>TTT	p.F72F		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	72	Homeobox 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		GTCTTTTCTGGAATCCGTGCC	0.418													29	95					0	0	1	0	0
DUXA	503835	broad.mit.edu	37	19	57672040	57672040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57672040C>T	uc002qoa.1	-	2	196	c.151G>A	c.(151-153)GAA>AAA	p.E51K		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	51	Homeobox 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		GTATTGATTTCTAAAGCAAGT	0.348													28	100					0	0	1	0	0
AURKC	6795	broad.mit.edu	37	19	57746631	57746631	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57746631C>T	uc002qoe.2	+	7	965	c.776C>T	c.(775-777)CCA>CTA	p.P259L	AURKC_uc002qoc.2_Missense_Mutation_p.P240L|AURKC_uc002qod.2_Missense_Mutation_p.P225L|AURKC_uc010etv.2_Missense_Mutation_p.P256L	NM_001015878	NP_001015878	Q9UQB9	AURKC_HUMAN	aurora kinase C isoform 1	259	Protein kinase.				cell cycle|cytokinesis	condensed chromosome|cytoplasm|midbody|spindle midzone	ATP binding|protein serine/threonine kinase activity			lung(4)|ovary(2)	6		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0122)		GTGAGGTTTCCACTATCAATG	0.517													17	36					0	0	1	0	0
ZNF304	57343	broad.mit.edu	37	19	57868278	57868278	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57868278C>T	uc010ygw.1	+	3	1429	c.1041C>T	c.(1039-1041)AGC>AGT	p.S347S	ZNF304_uc010etw.2_Silent_p.S394S|ZNF304_uc010etx.2_Silent_p.S305S	NM_020657	NP_065708	Q9HCX3	ZN304_HUMAN	zinc finger protein 304	347	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0265)		ACAGCAGAAGCTCCCACCTTG	0.473													31	78					0	0	1	0	0
ZNF304	57343	broad.mit.edu	37	19	57869041	57869041	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57869041C>T	uc010ygw.1	+	3	2192	c.1804C>T	c.(1804-1806)CTC>TTC	p.L602F	ZNF304_uc010etw.2_Missense_Mutation_p.L649F|ZNF304_uc010etx.2_Missense_Mutation_p.L560F	NM_020657	NP_065708	Q9HCX3	ZN304_HUMAN	zinc finger protein 304	602	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0265)		CAACTCTGGCCTCATTCTGCA	0.478													32	68					0	0	1	0	0
ZNF548	147694	broad.mit.edu	37	19	57910226	57910226	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:57910226C>T	uc002qom.2	+	3	821	c.571C>T	c.(571-573)CAG>TAG	p.Q191*	ZNF547_uc002qpm.3_Intron|ZNF548_uc002qon.2_Nonsense_Mutation_p.Q194*	NM_152909	NP_690873	Q8NEK5	ZN548_HUMAN	zinc finger protein 548	191					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGAAGCCTTTCAGACTGGACA	0.498													23	74					0	0	1	0	0
ZNF549	256051	broad.mit.edu	37	19	58049491	58049491	+	Silent	SNP	C	T	T	rs138206012		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58049491C>T	uc002qpb.1	+	4	1368	c.1119C>T	c.(1117-1119)TCC>TCT	p.S373S	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Intron|ZNF549_uc002qpa.1_Silent_p.S360S	NM_153263	NP_694995	Q6P9A3	ZN549_HUMAN	zinc finger protein 549	373	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTATTCATTCCTATGACCGCA	0.443													24	59					0	0	1	0	0
ZNF530	348327	broad.mit.edu	37	19	58115674	58115674	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58115674C>T	uc002qpk.2	+	2	280	c.60C>T	c.(58-60)GCC>GCT	p.A20A	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	20	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		AGGATGTGGCCATTTACTTCT	0.507													17	178					0	0	1	0	0
ZNF530	348327	broad.mit.edu	37	19	58118073	58118073	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58118073C>T	uc002qpk.2	+	3	1400	c.1180C>T	c.(1180-1182)CTT>TTT	p.L394F	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	394	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CAATATCTACCTTATTCACCA	0.423													46	98					0	0	1	0	0
ZNF530	348327	broad.mit.edu	37	19	58118247	58118247	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58118247C>T	uc002qpk.2	+	3	1574	c.1354C>T	c.(1354-1356)CGA>TGA	p.R452*	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	452	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TGGCCTCTTTCGACACAGAAG	0.423													37	126					0	0	1	0	0
ZNF530	348327	broad.mit.edu	37	19	58118530	58118530	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58118530C>T	uc002qpk.2	+	3	1857	c.1637C>T	c.(1636-1638)CCT>CTT	p.P546L	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	546					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GGAGAAAGGCCTTATGAGTGC	0.448													11	136					0	0	1	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58190262	58190262	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58190262G>A	uc002qpu.2	+	5	1988	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	431					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CTCCACACCAGAAGCTTCCTA	0.343													22	99					0	0	1	0	0
ZNF671	79891	broad.mit.edu	37	19	58231851	58231851	+	Nonstop_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58231851A>T	uc002qpz.3	-	4	1702	c.1603T>A	c.(1603-1605)TAA>AAA	p.*535K	ZNF776_uc002qpx.2_Intron|ZNF671_uc010eug.2_Nonstop_Mutation_p.*458K|ZNF671_uc010yhf.1_Nonstop_Mutation_p.*437K	NM_024833	NP_079109	Q8TAW3	ZN671_HUMAN	zinc finger protein 671	535					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTACACTCTTAAAGCTTTTCT	0.483													224	394					0	0	1	0	0
ZNF671	79891	broad.mit.edu	37	19	58232411	58232411	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58232411T>A	uc002qpz.3	-	4	1142	c.1043A>T	c.(1042-1044)AAA>ATA	p.K348I	ZNF776_uc002qpx.2_Intron|ZNF671_uc010eug.2_Missense_Mutation_p.K271I|ZNF671_uc010yhf.1_Missense_Mutation_p.K250I	NM_024833	NP_079109	Q8TAW3	ZN671_HUMAN	zinc finger protein 671	348	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TCTAAAGAATTTCCCACATTC	0.448													9	89					0	0	1	0	0
ZNF587	84914	broad.mit.edu	37	19	58367558	58367558	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58367558C>T	uc002qql.2	+	2	258	c.120C>T	c.(118-120)TAC>TAT	p.Y40Y	ZNF587_uc002qqb.2_5'UTR|ZNF587_uc010yhh.1_5'UTR|ZNF587_uc002qqi.1_5'UTR|ZNF587_uc002qqj.1_RNA|ZNF814_uc002qqk.2_Intron|ZNF587_uc010yhk.1_Silent_p.Y39Y	NM_032828	NP_116217	Q96SQ5	ZN587_HUMAN	zinc finger protein 587	40	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)		GGTGCTTGTACCGTGATGTGA	0.498													16	91					0	0	1	0	0
ZNF418	147686	broad.mit.edu	37	19	58438240	58438240	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58438240G>A	uc002qqs.1	-	4	1601	c.1309C>T	c.(1309-1311)CGA>TGA	p.R437*	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Nonsense_Mutation_p.R352*	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	437	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		TTGCCCTTTCGACTAAAAGAT	0.468													69	211					0	0	1	0	0
ZNF418	147686	broad.mit.edu	37	19	58439036	58439036	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58439036G>A	uc002qqs.1	-	4	805	c.513C>T	c.(511-513)AGC>AGT	p.S171S	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Silent_p.S86S	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	171					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		GTAATCCTGAGCTGGGCAAAA	0.478													34	70					0	0	1	0	0
ZNF256	10172	broad.mit.edu	37	19	58453672	58453672	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58453672G>A	uc002qqu.2	-	3	739	c.504C>T	c.(502-504)TTC>TTT	p.F168F	ZNF256_uc010euj.2_Silent_p.F15F	NM_005773	NP_005764	Q9Y2P7	ZN256_HUMAN	zinc finger protein 256	168					multicellular organismal development|negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0155)		CCTTGCAAGTGAAGGGCTTCC	0.478													10	108					0	0	1	0	0
ZNF606	80095	broad.mit.edu	37	19	58491150	58491150	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58491150G>A	uc002qqw.2	-	7	1516	c.898C>T	c.(898-900)CAT>TAT	p.H300Y	ZNF606_uc010yhp.1_Missense_Mutation_p.H210Y	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	300	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		TGTATTATATGATTGAAAGAT	0.318													22	64					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58551861	58551861	+	Silent	SNP	C	T	T	rs147151087		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58551861C>T	uc002qrc.1	+	4	661	c.414C>T	c.(412-414)TTC>TTT	p.F138F		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	138					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		ACTGGAGTTTCGGTGAGGAGG	0.612													10	177					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58551905	58551905	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58551905C>T	uc002qrc.1	+	4	705	c.458C>T	c.(457-459)CCA>CTA	p.P153L		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	153					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CAGAAAGAACCATCGCAGGTG	0.622													29	115					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565267	58565267	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58565267G>A	uc002qrc.1	+	6	1322	c.1075G>A	c.(1075-1077)GAG>AAG	p.E359K		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	359					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GGGCCCCCGGGAGTCCGTCCC	0.657													17	33					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565276	58565276	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58565276C>T	uc002qrc.1	+	6	1331	c.1084C>T	c.(1084-1086)CCA>TCA	p.P362S		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	362					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GGAGTCCGTCCCACCCAGGGA	0.662													16	29					0	0	1	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58598337	58598338	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58598337_58598338CC>TT	uc002qri.2	-	5	989_990	c.680_681GG>AA	c.(679-681)GGG>GAA	p.G227E	ZSCAN18_uc002qrj.3_Missense_Mutation_p.G227E|ZSCAN18_uc010yhs.1_Missense_Mutation_p.G92E|ZSCAN18_uc002qrh.2_Missense_Mutation_p.G227E|ZSCAN18_uc010yht.1_Missense_Mutation_p.G283E|ZSCAN18_uc002qrk.1_3'UTR|ZSCAN18_uc002qrl.2_3'UTR	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	227					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GGCCCCACTCCCCCAGGTGCTG	0.644													10	48					0	0	1	0	0
ZNF8	7554	broad.mit.edu	37	19	58805736	58805736	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58805736C>T	uc002qry.1	+	4	692	c.562C>T	c.(562-564)CCA>TCA	p.P188S	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	188					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		GAGTTCAAGCCCAAATCCATT	0.448													22	40					0	0	1	0	0
ZNF8	7554	broad.mit.edu	37	19	58805887	58805887	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58805887C>T	uc002qry.1	+	4	843	c.713C>T	c.(712-714)TCC>TTC	p.S238F	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	238					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		CACAGAGATTCCAGTCAGGCC	0.478													15	59					0	0	1	0	0
ZNF837	116412	broad.mit.edu	37	19	58879844	58879844	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58879844G>A	uc002qsm.2	-	3	1179	c.856C>T	c.(856-858)CTG>TTG	p.L286L	ZNF837_uc002qsl.3_Silent_p.L286L	NM_001129730	NP_001123202	Q96EG3	ZN837_HUMAN	zinc finger protein 837 isoform 1	286	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGCTGCAGCAGGCTGGAGGTG	0.701													4	7					0	0	1	0	0
RPS5	6193	broad.mit.edu	37	19	58906062	58906062	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58906062C>T	uc002qsn.2	+	6	632	c.560C>T	c.(559-561)TCC>TTC	p.S187F	RPS5_uc002qso.2_Missense_Mutation_p.S187F	NM_001009	NP_001000	P46782	RS5_HUMAN	ribosomal protein S5	187					endocrine pancreas development|regulation of translational fidelity|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	mRNA binding|structural constituent of ribosome				0		all_cancers(17;1.71e-22)|all_epithelial(17;1.69e-16)|Lung NSC(17;2.25e-06)|all_lung(17;9.97e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Breast(46;0.0194)|Ovarian(87;0.0443)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.171)|GBM - Glioblastoma multiforme(193;0.0323)|Lung(386;0.0543)|LUSC - Lung squamous cell carcinoma(496;0.176)		TCCTCGAACTCCTATGCCATT	0.567													46	124					0	0	1	0	0
ZNF584	201514	broad.mit.edu	37	19	58928497	58928497	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58928497C>T	uc002qsp.2	+	4	1064	c.612C>T	c.(610-612)CCC>CCT	p.P204P	ZNF584_uc010yia.1_RNA|ZNF584_uc002qsr.2_Silent_p.P159P|ZNF584_uc010yib.1_3'UTR	NM_173548	NP_775819	Q8IVC4	ZN584_HUMAN	zinc finger protein 584	204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;5.3e-17)|all_epithelial(17;3.71e-12)|Lung NSC(17;8.3e-05)|Colorectal(82;0.000147)|all_lung(17;0.000386)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0271)		ATATTAACCCCCGAAAAATTC	0.478													12	42					0	0	1	0	0
ZNF132	7691	broad.mit.edu	37	19	58945977	58945977	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58945977G>A	uc002qst.3	-	3	1235	c.834C>T	c.(832-834)ATC>ATT	p.I278I		NM_003433	NP_003424	P52740	ZN132_HUMAN	zinc finger protein 132	278						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0171)|Lung(386;0.182)		TATTACCAAGGATTGATTTCT	0.443													28	74					0	0	1	0	0
ZNF324B	388569	broad.mit.edu	37	19	58966695	58966695	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:58966695C>T	uc002qsv.1	+	4	491	c.384C>T	c.(382-384)GCC>GCT	p.A128A	ZNF324B_uc002qsu.1_Silent_p.A118A|ZNF324B_uc010euq.1_Silent_p.A128A	NM_207395	NP_997278	Q6AW86	Z324B_HUMAN	zinc finger protein 324B	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		AACCGGGTGCCTCCCCATCTC	0.607													35	87					0	0	1	0	0
FAM110C	642273	broad.mit.edu	37	2	45946	45946	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:45946C>T	uc010yim.1	-	1	440	c.440G>A	c.(439-441)GGG>GAG	p.G147E		NM_001077710	NP_001071178	Q1W6H9	F110C_HUMAN	hypothetical protein LOC642273	147						microtubule|microtubule organizing center|spindle pole					0	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00221)		all cancers(51;0.000815)|Epithelial(75;0.00379)|OV - Ovarian serous cystadenocarcinoma(76;0.0127)|GBM - Glioblastoma multiforme(21;0.232)		CTCCGGGTTCCCGGCCTTGCC	0.756													7	9					0	0	1	0	0
FAM110C	642273	broad.mit.edu	37	2	45964	45964	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:45964C>T	uc010yim.1	-	1	422	c.422G>A	c.(421-423)GGA>GAA	p.G141E		NM_001077710	NP_001071178	Q1W6H9	F110C_HUMAN	hypothetical protein LOC642273	141						microtubule|microtubule organizing center|spindle pole					0	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00221)		all cancers(51;0.000815)|Epithelial(75;0.00379)|OV - Ovarian serous cystadenocarcinoma(76;0.0127)|GBM - Glioblastoma multiforme(21;0.232)		GCCCTCGTCTCCCGTCCGGGG	0.736													4	17					0	0	1	0	0
SNTG2	54221	broad.mit.edu	37	2	1251138	1251138	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1251138G>A	uc002qwq.2	+	12	1056	c.928G>A	c.(928-930)GCT>ACT	p.A310T	SNTG2_uc010ewi.2_Missense_Mutation_p.A183T	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	310	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		ACTCCAAGGAGCTGACTCCTC	0.498													13	34					0	0	1	0	0
SNTG2	54221	broad.mit.edu	37	2	1263213	1263213	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1263213G>A	uc002qwq.2	+	13	1205	c.1077G>A	c.(1075-1077)AAG>AAA	p.K359K	SNTG2_uc010ewi.2_Silent_p.K232K	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	359	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		AAGTTCACAAGGTAGGTATCT	0.433													16	38					0	0	1	0	0
SNTG2	54221	broad.mit.edu	37	2	1271213	1271213	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1271213G>A	uc002qwq.2	+	14	1282	c.1154G>A	c.(1153-1155)AGG>AAG	p.R385K	SNTG2_uc010ewi.2_Missense_Mutation_p.R258K	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	385	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		GAGGACCAGAGGCCCTATTGC	0.512													11	20					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1418203	1418203	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1418203C>T	uc002qww.2	+	2	114	c.23C>T	c.(22-24)TCT>TTT	p.S8F	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Missense_Mutation_p.S8F|TPO_uc002qwu.2_Missense_Mutation_p.S8F|TPO_uc002qwr.2_Missense_Mutation_p.S8F|TPO_uc002qwx.2_Missense_Mutation_p.S8F|TPO_uc010yio.1_Missense_Mutation_p.S8F|TPO_uc010yip.1_Missense_Mutation_p.S8F	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	8					cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GCTGTGCTGTCTGTCACGCTG	0.507													13	28					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1437209	1437209	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1437209G>A	uc002qww.2	+	4	271	c.180_splice	c.e4-1	p.R60_splice	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Splice_Site_p.R60_splice|TPO_uc002qwu.2_Splice_Site_p.R60_splice|TPO_uc002qwr.2_Splice_Site_p.R60_splice|TPO_uc002qwx.2_Splice_Site_p.R60_splice|TPO_uc010yio.1_Splice_Site_p.R60_splice|TPO_uc010yip.1_Splice_Site_p.R60_splice	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a						cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	ATGTGCCATAGAAACCTCAAG	0.318													10	79					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1437219	1437219	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1437219G>A	uc002qww.2	+	4	280	c.189G>A	c.(187-189)AAG>AAA	p.K63K	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Silent_p.K63K|TPO_uc002qwu.2_Silent_p.K63K|TPO_uc002qwr.2_Silent_p.K63K|TPO_uc002qwx.2_Silent_p.K63K|TPO_uc010yio.1_Silent_p.K63K|TPO_uc010yip.1_Silent_p.K63K	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	63	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GAAACCTCAAGAAAAGAGGAA	0.333													32	65					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1457560	1457560	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1457560C>T	uc002qww.2	+	6	668	c.577C>T	c.(577-579)CCC>TCC	p.P193S	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.P193S|TPO_uc002qwr.2_Missense_Mutation_p.P193S|TPO_uc002qwx.2_Missense_Mutation_p.P193S|TPO_uc010yio.1_Missense_Mutation_p.P193S|TPO_uc010yip.1_Missense_Mutation_p.P193S	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	193	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	AGGCTGGAACCCCGGCTTCTT	0.612													15	68					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1459935	1459935	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1459935G>A	uc002qww.2	+	7	791	c.700G>A	c.(700-702)GGA>AGA	p.G234R	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.G234R|TPO_uc002qwr.2_Missense_Mutation_p.G234R|TPO_uc002qwx.2_Missense_Mutation_p.G234R|TPO_uc010yio.1_Missense_Mutation_p.G234R|TPO_uc010yip.1_Missense_Mutation_p.G234R	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	234	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GATGGCATGGGGACAATACAT	0.522													11	28					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1488383	1488383	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1488383G>A	uc002qww.2	+	9	1445	c.1354G>A	c.(1354-1356)GAT>AAT	p.D452N	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.D452N|TPO_uc002qwr.2_Missense_Mutation_p.D452N|TPO_uc002qwx.2_Missense_Mutation_p.D452N|TPO_uc010yio.1_Missense_Mutation_p.D279N|TPO_uc010yip.1_Missense_Mutation_p.D452N|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	452	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CACCCTGAGGGATTACATCCC	0.577													13	24					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1488413	1488413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1488413G>A	uc002qww.2	+	9	1475	c.1384G>A	c.(1384-1386)GCC>ACC	p.A462T	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.A462T|TPO_uc002qwr.2_Missense_Mutation_p.A462T|TPO_uc002qwx.2_Missense_Mutation_p.A462T|TPO_uc010yio.1_Missense_Mutation_p.A289T|TPO_uc010yip.1_Missense_Mutation_p.A462T|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	462	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GGGACCCGAGGCCTTCCAGCA	0.592													17	26					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1488505	1488505	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1488505C>T	uc002qww.2	+	9	1567	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Silent_p.F492F|TPO_uc002qwr.2_Silent_p.F492F|TPO_uc002qwx.2_Silent_p.F492F|TPO_uc010yio.1_Silent_p.F319F|TPO_uc010yip.1_Silent_p.F492F|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	492	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CCTTCCGCTTCGGCCATGCCA	0.652													12	51					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1507763	1507763	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1507763C>T	uc002qww.2	+	14	2521	c.2430C>T	c.(2428-2430)GCC>GCT	p.A810A	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Silent_p.A753A|TPO_uc002qwr.2_Silent_p.A810A|TPO_uc002qwx.2_Silent_p.A753A|TPO_uc010yio.1_Silent_p.A637A|TPO_uc010yip.1_Intron|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	810	Extracellular (Potential).|EGF-like; calcium-binding (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CCTGCCACGCCTCTGCGAGGT	0.627													21	43					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1544488	1544488	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1544488C>T	uc002qww.2	+	16	2832	c.2741C>T	c.(2740-2742)TCG>TTG	p.S914L	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.S857L|TPO_uc002qwr.2_Missense_Mutation_p.S914L|TPO_uc002qwx.2_Missense_Mutation_p.S857L|TPO_uc010yio.1_Missense_Mutation_p.S741L|TPO_uc010yip.1_Missense_Mutation_p.S870L|TPO_uc002qwy.1_Missense_Mutation_p.S210L|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	914	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GCTCAGGACTCGGAGCAGGTG	0.652													21	45					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1651957	1651957	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1651957C>T	uc002qxa.2	-	17	3659	c.3595G>A	c.(3595-3597)GAG>AAG	p.E1199K		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1199					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TTCAGTTTCTCCCGGATCTCA	0.517													46	213					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1653404	1653404	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1653404G>A	uc002qxa.2	-	17	2212	c.2148C>T	c.(2146-2148)CTC>CTT	p.L716L		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	716					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GGTTTGCGATGAGGTTCAGGT	0.582													10	86					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1658192	1658192	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1658192G>A	uc002qxa.2	-	15	1990	c.1926C>T	c.(1924-1926)ACC>ACT	p.T642T	PXDN_uc002qxb.1_Silent_p.T642T	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	642					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		AATGTGTTCGGGTTGAGTTTA	0.468													6	46					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1670063	1670063	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1670063C>T	uc002qxa.2	-	10	1278	c.1214G>A	c.(1213-1215)GGG>GAG	p.G405E	PXDN_uc002qxb.1_Missense_Mutation_p.G405E|PXDN_uc002qxc.1_Missense_Mutation_p.G222E	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	405	Ig-like C2-type 2.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TCCGCTGTCCCCCTGTACGAC	0.587													9	36					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1684132	1684132	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1684132C>T	uc002qxa.2	-	7	627	c.563G>A	c.(562-564)CGA>CAA	p.R188Q	PXDN_uc002qxb.1_Missense_Mutation_p.R188Q|PXDN_uc002qxc.1_Missense_Mutation_p.R5Q	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	188					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TGAGTCCAGTCGCCTGTGGGA	0.592													16	32					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1891351	1891351	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1891351G>A	uc002qxe.2	-	17	3378	c.2551C>T	c.(2551-2553)CTA>TTA	p.L851L	MYT1L_uc002qxd.2_Silent_p.L849L|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	851					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CTTTCTTCTAGAGCCTCCTGG	0.527													27	140					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1893043	1893043	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1893043C>T	uc002qxe.2	-	16	3317	c.2490G>A	c.(2488-2490)AGG>AGA	p.R830R	MYT1L_uc002qxd.2_Silent_p.R828R|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	830					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CCTCGTCTATCCTCCGGGGTT	0.537													24	72					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1906950	1906950	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1906950G>A	uc002qxe.2	-	14	2761	c.1934C>T	c.(1933-1935)TCG>TTG	p.S645L	MYT1L_uc002qxd.2_Missense_Mutation_p.S643L|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	645					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GTATTCAAACGAGGTCTTGGA	0.483													27	59					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1914014	1914014	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1914014G>A	uc002qxe.2	-	13	2642	c.1815C>T	c.(1813-1815)CTC>CTT	p.L605L	MYT1L_uc002qxd.2_Silent_p.L603L|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	605					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CTGGGTACCTGAGCACGCGGT	0.637													26	27					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1926255	1926255	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1926255C>T	uc002qxe.2	-	10	2113	c.1286G>A	c.(1285-1287)GGG>GAG	p.G429E	MYT1L_uc002qxd.2_Missense_Mutation_p.G429E|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	429					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GGTCAGGTTCCCCTTGGTCAT	0.552													35	91					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1926313	1926313	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1926313C>T	uc002qxe.2	-	10	2055	c.1228G>A	c.(1228-1230)GAC>AAC	p.D410N	MYT1L_uc002qxd.2_Missense_Mutation_p.D410N|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	410					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GTGGTATCGTCGTCCCGCTCA	0.582													14	53					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1926341	1926341	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1926341C>T	uc002qxe.2	-	10	2027	c.1200G>A	c.(1198-1200)GCG>GCA	p.A400A	MYT1L_uc002qxd.2_Silent_p.A400A|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	400					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CATCCTCCTTCGCACAGCTGG	0.597													17	25					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1926806	1926806	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:1926806C>T	uc002qxe.2	-	10	1562	c.735G>A	c.(733-735)CGG>CGA	p.R245R	MYT1L_uc002qxd.2_Silent_p.R245R|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	245					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		ACTCACTTTTCCGACCCAGGT	0.458													42	113					0	0	1	0	0
TTC15	51112	broad.mit.edu	37	2	3391706	3391706	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:3391706C>T	uc002qxm.1	+	2	518	c.312C>T	c.(310-312)CCC>CCT	p.P104P	TTC15_uc002qxn.1_Silent_p.P104P|TTC15_uc010ewm.1_Silent_p.P104P|TTC15_uc002qxl.1_Silent_p.P104P	NM_016030	NP_057114	Q8WVT3	TTC15_HUMAN	tetratricopeptide repeat domain 15	104							binding			ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.214)		OV - Ovarian serous cystadenocarcinoma(76;0.0402)|Epithelial(75;0.0986)|all cancers(51;0.149)		GCCCGGAGCCCGCGGGCACCC	0.771													4	5					0	0	1	0	0
TTC15	51112	broad.mit.edu	37	2	3392325	3392325	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:3392325C>G	uc002qxm.1	+	2	1137	c.931C>G	c.(931-933)CTT>GTT	p.L311V	TTC15_uc002qxn.1_Missense_Mutation_p.L311V|TTC15_uc010ewm.1_Missense_Mutation_p.L311V|TTC15_uc002qxl.1_Missense_Mutation_p.L311V	NM_016030	NP_057114	Q8WVT3	TTC15_HUMAN	tetratricopeptide repeat domain 15	311							binding			ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.214)		OV - Ovarian serous cystadenocarcinoma(76;0.0402)|Epithelial(75;0.0986)|all cancers(51;0.149)		CGACGCCTGGCTTCCCGGCGA	0.672													10	32					0	0	1	0	0
ADI1	55256	broad.mit.edu	37	2	3504690	3504690	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:3504690G>A	uc002qxp.3	-	3	407	c.315C>T	c.(313-315)TTC>TTT	p.F105F	ADI1_uc010yiq.1_RNA	NM_018269	NP_060739	Q9BV57	MTND_HUMAN	acireductone dioxygenase 1	105					L-methionine salvage from methylthioadenosine	cytoplasm|nucleus|plasma membrane	acireductone dioxygenase (Ni2+-requiring) activity|metal ion binding|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0729)|Epithelial(75;0.173)|all cancers(51;0.228)		CCCTCACATCGAAGTACCCAC	0.537													13	60					0	0	1	0	0
SOX11	6664	broad.mit.edu	37	2	5832928	5832928	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:5832928A>G	uc002qyj.2	+	1	130	c.75A>G	c.(73-75)GAA>GAG	p.E25E		NM_003108	NP_003099	P35716	SOX11_HUMAN	SRY-box 11	25					cardiac ventricle formation|closure of optic fissure|cornea development in camera-type eye|embryonic digestive tract morphogenesis|embryonic skeletal system morphogenesis|eyelid development in camera-type eye|glial cell proliferation|hard palate development|lens morphogenesis in camera-type eye|limb bud formation|lung morphogenesis|negative regulation of cell death|negative regulation of glial cell proliferation|negative regulation of lymphocyte proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|neural crest cell development|neural tube formation|neuroepithelial cell differentiation|noradrenergic neuron differentiation|outflow tract morphogenesis|positive regulation of BMP signaling pathway|positive regulation of hippo signaling cascade|positive regulation of hormone secretion|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of ossification|positive regulation of osteoblast differentiation|positive regulation of stem cell proliferation|regulation of transforming growth factor beta receptor signaling pathway|signal transduction involved in G1/S transition checkpoint|soft palate development|somite development|spinal cord development|sympathetic nervous system development|ventricular septum morphogenesis	cytoplasm|nucleolus	enhancer sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity|translation factor activity, nucleic acid binding			central_nervous_system(3)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			OV - Ovarian serous cystadenocarcinoma(76;0.132)		AGGAGGGCGAATTCATGGCTT	0.657													5	22					0	0	1	0	0
CMPK2	129607	broad.mit.edu	37	2	6991667	6991667	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:6991667C>T	uc002qyo.2	-	4	1249	c.1140G>A	c.(1138-1140)GAG>GAA	p.E380E	CMPK2_uc002qyn.1_RNA|CMPK2_uc010yis.1_Intron|CMPK2_uc010ewv.2_Silent_p.E380E	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	380	Potential.				dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GCAACCTCTCCTCAGGACTCA	0.587													23	78					0	0	1	0	0
RSAD2	91543	broad.mit.edu	37	2	7018127	7018127	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:7018127C>T	uc002qyp.1	+	1	332	c.196C>T	c.(196-198)CCT>TCT	p.P66S		NM_080657	NP_542388	Q8WXG1	RSAD2_HUMAN	radical S-adenosyl methionine domain containing	66					defense response to virus	endoplasmic reticulum membrane|Golgi apparatus	catalytic activity|iron-sulfur cluster binding|metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			OV - Ovarian serous cystadenocarcinoma(76;0.191)		GGAAGAGGACCCTCCTCTGCC	0.552													23	57					0	0	1	0	0
KIDINS220	57498	broad.mit.edu	37	2	8871662	8871662	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:8871662G>A	uc002qzc.2	-	30	4686	c.4504C>T	c.(4504-4506)CTC>TTC	p.L1502F	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.L1403F|KIDINS220_uc002qzb.2_Missense_Mutation_p.L356F	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1502	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GTCTGGAAGAGGCTTGACCTT	0.473													19	46					0	0	1	0	0
KIDINS220	57498	broad.mit.edu	37	2	8873709	8873709	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:8873709G>A	uc002qzc.2	-	29	4100	c.3918C>T	c.(3916-3918)CGC>CGT	p.R1306R	KIDINS220_uc010yiv.1_Silent_p.R1015R|KIDINS220_uc002qzd.2_Silent_p.R1207R|KIDINS220_uc002qzb.2_Silent_p.R160R	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1306	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GGGAAGCGCGGCGAGCAGGCT	0.597													34	73					0	0	1	0	0
KIDINS220	57498	broad.mit.edu	37	2	8890460	8890460	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:8890460G>A	uc002qzc.2	-	24	3378	c.3196C>T	c.(3196-3198)CGT>TGT	p.R1066C	KIDINS220_uc010yiv.1_Missense_Mutation_p.R832C|KIDINS220_uc002qzd.2_Missense_Mutation_p.R1024C|KIDINS220_uc010yiw.1_Missense_Mutation_p.R1067C|KIDINS220_uc002qzb.2_5'UTR|KIDINS220_uc002qze.2_Missense_Mutation_p.R71C	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1066	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					CTGGCAGCACGAACATCTGAA	0.512													9	25					0	0	1	0	0
KIDINS220	57498	broad.mit.edu	37	2	8928844	8928844	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:8928844G>A	uc002qzc.2	-	15	1902	c.1720C>T	c.(1720-1722)CTC>TTC	p.L574F	KIDINS220_uc010yiv.1_Missense_Mutation_p.L340F|KIDINS220_uc002qzd.2_Missense_Mutation_p.L532F|KIDINS220_uc010yiw.1_Missense_Mutation_p.L575F	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	574	Cytoplasmic (Potential).|KAP NTPase.				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AATTTAAGGAGGAGTTCCAAA	0.428													35	98					0	0	1	0	0
GRHL1	29841	broad.mit.edu	37	2	10132199	10132199	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:10132199C>T	uc002raa.2	+	11	1557	c.1386C>T	c.(1384-1386)CCC>CCT	p.P462P	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Silent_p.P273P|GRHL1_uc010yjb.1_Silent_p.P311P	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	462					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		TTTTCAAACCCTTCATTGATC	0.448													30	28					0	0	1	0	0
GRHL1	29841	broad.mit.edu	37	2	10132227	10132227	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:10132227C>T	uc002raa.2	+	11	1585	c.1414C>T	c.(1414-1416)CTC>TTC	p.L472F	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Missense_Mutation_p.L283F|GRHL1_uc010yjb.1_Missense_Mutation_p.L321F	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	472					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		TCAGCCTGTCCTCTTCATTCC	0.483													13	50					0	0	1	0	0
KLF11	8462	broad.mit.edu	37	2	10186390	10186390	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:10186390T>A	uc002raf.1	+	2	318	c.156T>A	c.(154-156)GTT>GTA	p.V52V	KLF11_uc010yjc.1_Silent_p.V35V	NM_003597	NP_003588	O14901	KLF11_HUMAN	Kruppel-like factor 11	52					apoptosis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|regulation of transcription involved in S phase of mitotic cell cycle	nucleus	sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.133)|OV - Ovarian serous cystadenocarcinoma(76;0.228)		AGGCTCTTGTTTGTATGAGCT	0.537													31	51					0	0	1	0	0
KLF11	8462	broad.mit.edu	37	2	10187786	10187786	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:10187786C>T	uc002raf.1	+	3	484	c.322C>T	c.(322-324)CCT>TCT	p.P108S	KLF11_uc010yjc.1_Missense_Mutation_p.P91S	NM_003597	NP_003588	O14901	KLF11_HUMAN	Kruppel-like factor 11	108					apoptosis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|regulation of transcription involved in S phase of mitotic cell cycle	nucleus	sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.133)|OV - Ovarian serous cystadenocarcinoma(76;0.228)		GTGCATAACTCCTCCTCAGAG	0.413													12	75					0	0	1	0	0
CYS1	192668	broad.mit.edu	37	2	10199021	10199021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:10199021C>T	uc002rag.2	-	3	624	c.436G>A	c.(436-438)GAG>AAG	p.E146K		NM_001037160	NP_001032237	Q717R9	CYS1_HUMAN	cystin 1	146						cilium axoneme					0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.166)|OV - Ovarian serous cystadenocarcinoma(76;0.227)		ATCAGCCCCTCTTCCGAGTGG	0.677													8	5					0	0	1	0	0
HPCAL1	3241	broad.mit.edu	37	2	10560075	10560075	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:10560075C>T	uc002raj.2	+	3	566	c.192C>T	c.(190-192)TTC>TTT	p.F64F	HPCAL1_uc002rak.2_Silent_p.F64F|HPCAL1_uc002ral.2_Silent_p.F64F|HPCAL1_uc010exe.2_RNA|HPCAL1_uc010exf.2_Silent_p.F64F	NM_002149	NP_002140	P37235	HPCL1_HUMAN	hippocalcin-like 1	64	EF-hand 2.						calcium ion binding			pancreas(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.214)		CTTCCAAGTTCGCCGAGCACG	0.617													9	79					0	0	1	0	0
NOL10	79954	broad.mit.edu	37	2	10712207	10712207	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:10712207G>A	uc002raq.2	-	21	2182	c.2057C>T	c.(2056-2058)TCG>TTG	p.S686L	NOL10_uc010yje.1_Missense_Mutation_p.S660L|NOL10_uc010yjf.1_Missense_Mutation_p.S636L|NOL10_uc002rap.2_Missense_Mutation_p.S636L	NM_024894	NP_079170	Q9BSC4	NOL10_HUMAN	nucleolar protein 10	686						nucleolus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.207)		TCAATGAAACGACCGTCCTCT	0.498													67	166					0	0	1	0	0
ATP6V1C2	245973	broad.mit.edu	37	2	10911968	10911968	+	Silent	SNP	G	A	A	rs142569799	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:10911968G>A	uc002ras.2	+	7	583	c.474G>A	c.(472-474)GGG>GGA	p.G158G	ATP6V1C2_uc002rat.2_Silent_p.G158G	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	158					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		CTTTTAGGGGGAACCTCTTCA	0.537													63	128					0	0	1	0	0
KCNF1	3754	broad.mit.edu	37	2	11052763	11052763	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11052763G>A	uc002rax.2	+	1	701	c.211G>A	c.(211-213)GAC>AAC	p.D71N		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	71	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		CGACGACTACGACCCCGGCAA	0.597													18	34					0	0	1	0	0
KCNF1	3754	broad.mit.edu	37	2	11052823	11052823	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11052823G>A	uc002rax.2	+	1	761	c.271G>A	c.(271-273)GAG>AAG	p.E91K		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	91	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		GTGTGTCATCGAGGTGTACTA	0.562													19	40					0	0	1	0	0
KCNF1	3754	broad.mit.edu	37	2	11053475	11053475	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11053475C>T	uc002rax.2	+	1	1413	c.923C>T	c.(922-924)TCG>TTG	p.S308L		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	308	Helical; Voltage-sensor; Name=Segment S4; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		CGCCACTCCTCGGGCCTGCAG	0.637													6	23					0	0	1	0	0
C2orf50	130813	broad.mit.edu	37	2	11284107	11284107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11284107C>T	uc010yji.1	+	3	641	c.359C>T	c.(358-360)CCC>CTC	p.P120L	C2orf50_uc010yjj.1_Missense_Mutation_p.P120L	NM_182500	NP_872306	Q96LR7	CB050_HUMAN	hypothetical protein LOC130813	120											0	all_hematologic(175;0.0797)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.0997)|OV - Ovarian serous cystadenocarcinoma(76;0.134)		GACACAGTTCCCAGTTCCACG	0.582													19	71					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11702695	11702695	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11702695C>T	uc002rbk.1	+	3	564	c.264C>T	c.(262-264)TGC>TGT	p.C88C	GREB1_uc002rbl.2_Silent_p.C88C|GREB1_uc002rbm.2_5'UTR|GREB1_uc002rbn.1_Silent_p.C88C	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	88						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CTGAAGGATGCTGTACCACAG	0.627													21	109					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11706749	11706749	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11706749T>C	uc002rbk.1	+	4	721	c.421T>C	c.(421-423)TTG>CTG	p.L141L	GREB1_uc002rbl.2_Silent_p.L141L|GREB1_uc002rbm.2_Silent_p.L31L|GREB1_uc002rbn.1_Silent_p.L141L	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	141						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CAAGAGGTTCTTGCCAGATGA	0.577													42	105					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11718434	11718434	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11718434C>T	uc002rbk.1	+	6	949	c.649C>T	c.(649-651)CGG>TGG	p.R217W	GREB1_uc002rbl.2_Missense_Mutation_p.R217W|GREB1_uc002rbm.2_Missense_Mutation_p.R107W|GREB1_uc002rbn.1_Missense_Mutation_p.R217W	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	217						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		GTTTAGAAGCCGGCAGATCCC	0.577													79	131					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11718523	11718523	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11718523G>A	uc002rbk.1	+	6	1038	c.738G>A	c.(736-738)ACG>ACA	p.T246T	GREB1_uc002rbl.2_Silent_p.T246T|GREB1_uc002rbm.2_Silent_p.T136T|GREB1_uc002rbn.1_Silent_p.T246T	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	246						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		TTCCTGGGACGAACCCCAGCA	0.617													28	79					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11725328	11725328	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11725328G>A	uc002rbk.1	+	8	1243	c.943G>A	c.(943-945)GGG>AGG	p.G315R	GREB1_uc002rbl.2_Missense_Mutation_p.G315R|GREB1_uc002rbn.1_Missense_Mutation_p.G315R	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	315						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		ACGCCACAAAGGGTGGTCTCC	0.502													15	26					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11728976	11728976	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11728976G>A	uc002rbk.1	+	10	1564	c.1264G>A	c.(1264-1266)GAG>AAG	p.E422K	GREB1_uc002rbn.1_Missense_Mutation_p.E422K|GREB1_uc002rbo.1_Missense_Mutation_p.E56K	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	422						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		ACGGGCATACGAGCAGTACGG	0.587													43	88					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11758700	11758700	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11758700G>A	uc002rbk.1	+	22	3999	c.3699G>A	c.(3697-3699)GTG>GTA	p.V1233V	GREB1_uc002rbp.1_Silent_p.V231V	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1233						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CCTCATCCGTGGCGCCCGCTG	0.672													7	22					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11765357	11765357	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11765357C>T	uc002rbk.1	+	24	4525	c.4225C>T	c.(4225-4227)CCC>TCC	p.P1409S	GREB1_uc002rbp.1_Missense_Mutation_p.P407S	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1409						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CAAGAAGTTGCCCTTTGACTA	0.463													104	262					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11780534	11780534	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11780534C>T	uc002rbk.1	+	33	6104	c.5804C>T	c.(5803-5805)GCC>GTC	p.A1935V	GREB1_uc002rbp.1_Missense_Mutation_p.A933V	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1935						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		ACCGCCAATGCCAGGGAAGAC	0.602													21	126					0	0	1	0	0
NTSR2	23620	broad.mit.edu	37	2	11809800	11809800	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11809800G>A	uc002rbq.3	-	1	530	c.456C>T	c.(454-456)ACC>ACT	p.T152T		NM_012344	NP_036476	O95665	NTR2_HUMAN	neurotensin receptor 2	152	Cytoplasmic (Potential).				sensory perception	integral to plasma membrane					0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.129)|OV - Ovarian serous cystadenocarcinoma(76;0.24)	Levocabastine(DB01106)	CCAGCCACCGGGTCCGGCGTG	0.741													4	6					0	0	1	0	0
LPIN1	23175	broad.mit.edu	37	2	11944573	11944573	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11944573C>T	uc010yjn.1	+	16	2204	c.1930C>T	c.(1930-1932)CCC>TCC	p.P644S	LPIN1_uc010yjm.1_Missense_Mutation_p.P729S|LPIN1_uc002rbt.2_Missense_Mutation_p.P644S|LPIN1_uc010yjo.1_Missense_Mutation_p.P145S	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	644	C-LIP.				fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		GAAGAATGGCCCCAACGACGT	0.468													21	66					0	0	1	0	0
LPIN1	23175	broad.mit.edu	37	2	11964828	11964828	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:11964828C>T	uc010yjn.1	+	21	2858	c.2584C>T	c.(2584-2586)CCC>TCC	p.P862S	LPIN1_uc010yjm.1_Missense_Mutation_p.P947S|LPIN1_uc002rbt.2_Missense_Mutation_p.P862S|LPIN1_uc010yjo.1_Missense_Mutation_p.P363S	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	862					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		TTCAGACTTTCCCTGTTCGGA	0.473													32	62					0	0	1	0	0
NBAS	51594	broad.mit.edu	37	2	15326904	15326904	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:15326904G>A	uc002rcc.1	-	50	6699	c.6673C>T	c.(6673-6675)CGC>TGC	p.R2225C	NBAS_uc002rcb.1_Missense_Mutation_p.R65C|NBAS_uc010exl.1_Missense_Mutation_p.R1297C|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2225										ovary(2)|liver(1)|skin(1)	4						TACAAAGAGCGACACATTTTC	0.428													39	112					0	0	1	0	0
NBAS	51594	broad.mit.edu	37	2	15415903	15415903	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:15415903G>A	uc002rcc.1	-	44	5455	c.5429C>T	c.(5428-5430)CCT>CTT	p.P1810L	NBAS_uc010exl.1_Missense_Mutation_p.P882L|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	1810										ovary(2)|liver(1)|skin(1)	4						TGCTTCAAGAGGACTCATGTT	0.368													19	77					0	0	1	0	0
NBAS	51594	broad.mit.edu	37	2	15448386	15448386	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:15448386G>A	uc002rcc.1	-	40	4777	c.4751C>T	c.(4750-4752)GCC>GTC	p.A1584V	NBAS_uc010exl.1_Missense_Mutation_p.A656V|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	1584										ovary(2)|liver(1)|skin(1)	4						GGCCAATCGGGCATAGATCTG	0.473													16	42					0	0	1	0	0
NBAS	51594	broad.mit.edu	37	2	15601415	15601415	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:15601415G>A	uc002rcc.1	-	21	2275	c.2249C>T	c.(2248-2250)TCC>TTC	p.S750F	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	750										ovary(2)|liver(1)|skin(1)	4						AAGCAGGTCGGAACCATGGTA	0.418													20	90					0	0	1	0	0
NBAS	51594	broad.mit.edu	37	2	15608549	15608549	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:15608549G>A	uc002rcc.1	-	17	1860	c.1834C>T	c.(1834-1836)CTG>TTG	p.L612L	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	612										ovary(2)|liver(1)|skin(1)	4						AGAGCCTCCAGGTCTGTGCCT	0.413													40	148					0	0	1	0	0
MYCN	4613	broad.mit.edu	37	2	16086016	16086016	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:16086016C>T	uc002rci.2	+	3	1492	c.1192C>T	c.(1192-1194)CGG>TGG	p.R398W	MYCN_uc010yjr.1_Missense_Mutation_p.R390W	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	398	Helix-loop-helix motif.				regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			CAACGACCTTCGGTCCAGCTT	0.567			A		neuroblastoma								48	114					0	0	1	0	0
FAM49A	81553	broad.mit.edu	37	2	16740758	16740758	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:16740758C>T	uc010exm.1	-	9	955	c.807G>A	c.(805-807)GTG>GTA	p.V269V	FAM49A_uc002rck.1_Silent_p.V269V	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	269						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			AGAAAGCTCCCACAGGGTGGA	0.468													28	111					0	0	1	0	0
FAM49A	81553	broad.mit.edu	37	2	16740853	16740853	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:16740853C>T	uc010exm.1	-	9	860	c.712G>A	c.(712-714)GAG>AAG	p.E238K	FAM49A_uc002rck.1_Missense_Mutation_p.E238K	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	238						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			CTTCTGTACTCCCTGCAAGAG	0.502													28	82					0	0	1	0	0
FAM49A	81553	broad.mit.edu	37	2	16745363	16745363	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:16745363C>T	uc010exm.1	-	4	341	c.193_splice	c.e4-1	p.A65_splice	FAM49A_uc002rck.1_Splice_Site_p.A65_splice	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A							intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			TTTGAATTGCCTGCAAAAACA	0.373													10	39					0	0	1	0	0
FAM49A	81553	broad.mit.edu	37	2	16769358	16769358	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:16769358C>T	uc010exm.1	-	2	178	c.30G>A	c.(28-30)AGG>AGA	p.R10R	FAM49A_uc002rck.1_Silent_p.R10R	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	10						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			TTTCAATTTCCCTGGTAAGGA	0.333													28	45					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17692204	17692205	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:17692204_17692205CC>TT	uc002rcl.1	-	3	3370_3371	c.3346_3347GG>AA	c.(3346-3348)GGC>AAC	p.G1116N	RAD51AP2_uc010exn.1_Missense_Mutation_p.G1107N	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	1116	Interaction with RAD51.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TCTTGAAATGCCATGTGGAAAG	0.322													4	22					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17698394	17698394	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:17698394C>T	uc002rcl.1	-	1	1313	c.1289G>A	c.(1288-1290)TGG>TAG	p.W430*	RAD51AP2_uc010exn.1_Nonsense_Mutation_p.W421*	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	430										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TAGCCAATTCCATTTTTCTTC	0.289													10	21					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17698997	17698997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:17698997G>A	uc002rcl.1	-	1	710	c.686C>T	c.(685-687)TCA>TTA	p.S229L	RAD51AP2_uc010exn.1_Missense_Mutation_p.S220L	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	229										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TAGTACAGATGATGAAATGTT	0.338													17	69					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17699326	17699326	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:17699326G>A	uc002rcl.1	-	1	381	c.357C>T	c.(355-357)CCC>CCT	p.P119P	RAD51AP2_uc010exn.1_Silent_p.P110P	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	119										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GACTTTGTGAGGGGGGAGACT	0.478													16	66					0	0	1	0	0
SMC6	79677	broad.mit.edu	37	2	17927185	17927185	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:17927185G>A	uc002rco.2	-	3	325	c.29C>T	c.(28-30)TCC>TTC	p.S10F	SMC6_uc010exo.2_Missense_Mutation_p.S10F|SMC6_uc002rcn.2_Missense_Mutation_p.S10F|SMC6_uc002rcp.1_Missense_Mutation_p.S10F|SMC6_uc002rcq.2_Missense_Mutation_p.S10F|SMC6_uc002rcr.1_Missense_Mutation_p.S10F	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	10					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTTAGGAGAGGAAAAATTTTC	0.328													7	25					0	0	1	0	0
MSGN1	343930	broad.mit.edu	37	2	17997965	17997965	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:17997965C>T	uc010yjt.1	+	1	180	c.180C>T	c.(178-180)CCC>CCT	p.P60P		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	60					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTTCTTCTCCCTGTCCAGCTG	0.657													8	90					0	0	1	0	0
KCNS3	3790	broad.mit.edu	37	2	18112930	18112930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:18112930G>A	uc002rcv.2	+	3	1106	c.655G>A	c.(655-657)GAT>AAT	p.D219N	KCNS3_uc002rcw.2_Missense_Mutation_p.D219N	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	219	Helical; Name=Segment S2; (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					AGAAGTGGATGATCCGGTGCT	0.572													19	78					0	0	1	0	0
KCNS3	3790	broad.mit.edu	37	2	18113038	18113038	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:18113038C>T	uc002rcv.2	+	3	1214	c.763C>T	c.(763-765)CTG>TTG	p.L255L	KCNS3_uc002rcw.2_Silent_p.L255L	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	255	Helical; Name=Segment S3; (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GAAAAACCCTCTGAACATCAT	0.512													31	136					0	0	1	0	0
KCNS3	3790	broad.mit.edu	37	2	18113370	18113370	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:18113370C>T	uc002rcv.2	+	3	1546	c.1095C>T	c.(1093-1095)ACC>ACT	p.T365T	KCNS3_uc002rcw.2_Silent_p.T365T	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	365	Segment H5 (pore-forming) (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GGTGGGCCACCATCAGCATGA	0.557													29	69					0	0	1	0	0
KCNS3	3790	broad.mit.edu	37	2	18113665	18113665	+	Missense_Mutation	SNP	G	A	A	rs150320186		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:18113665G>A	uc002rcv.2	+	3	1841	c.1390G>A	c.(1390-1392)GAT>AAT	p.D464N	KCNS3_uc002rcw.2_Missense_Mutation_p.D464N	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	464	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity	p.D464N(1)		ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TGTGGTGAGCGATCCTGACTC	0.453													36	74					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765360	18765360	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:18765360G>A	uc002rcz.2	-	6	1169	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	NT5C1B_uc002rcy.2_Silent_p.F355F|NT5C1B_uc010exr.2_Silent_p.F297F|NT5C1B_uc010yju.1_Silent_p.F295F|NT5C1B_uc002rda.2_Silent_p.F295F|NT5C1B_uc010yjv.1_Silent_p.F372F|NT5C1B_uc010yjw.1_Silent_p.F338F|NT5C1B_uc010exs.2_Silent_p.F357F|NT5C1B_uc002rdb.1_Silent_p.F147F	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	355					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				ATACCTTGACGAAGCGGAACG	0.572													31	119					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765443	18765443	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:18765443C>T	uc002rcz.2	-	6	1086	c.982G>A	c.(982-984)GAG>AAG	p.E328K	NT5C1B_uc002rcy.2_Missense_Mutation_p.E328K|NT5C1B_uc010exr.2_Missense_Mutation_p.E270K|NT5C1B_uc010yju.1_Missense_Mutation_p.E268K|NT5C1B_uc002rda.2_Missense_Mutation_p.E268K|NT5C1B_uc010yjv.1_Missense_Mutation_p.E345K|NT5C1B_uc010yjw.1_Missense_Mutation_p.E311K|NT5C1B_uc010exs.2_Missense_Mutation_p.E330K|NT5C1B_uc002rdb.1_Missense_Mutation_p.E120K	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	328					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				CCCTCTTGCTCGTAGATTTTC	0.552													52	149					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18767566	18767566	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:18767566T>G	uc002rcz.2	-	4	496	c.392A>C	c.(391-393)AAG>ACG	p.K131T	NT5C1B_uc002rcy.2_Missense_Mutation_p.K131T|NT5C1B_uc010exr.2_Missense_Mutation_p.K71T|NT5C1B_uc010yju.1_Missense_Mutation_p.K71T|NT5C1B_uc002rda.2_Missense_Mutation_p.K71T|NT5C1B_uc010yjv.1_Missense_Mutation_p.K148T|NT5C1B_uc010yjw.1_Missense_Mutation_p.K114T|NT5C1B_uc010exs.2_Missense_Mutation_p.K131T|NT5C1B_uc002rdb.1_5'Flank	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	131	Ser-rich.				purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GGATGGAGCCTTGGTGGATGG	0.453													30	89					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18768348	18768348	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:18768348C>T	uc002rcz.2	-	3	316	c.212G>A	c.(211-213)GGA>GAA	p.G71E	NT5C1B_uc002rcy.2_Missense_Mutation_p.G71E|NT5C1B_uc010exr.2_Intron|NT5C1B_uc010yju.1_Intron|NT5C1B_uc002rda.2_Intron|NT5C1B_uc010yjv.1_Missense_Mutation_p.G71E|NT5C1B_uc010yjw.1_Missense_Mutation_p.G54E|NT5C1B_uc010exs.2_Missense_Mutation_p.G71E|NT5C1B_uc002rdb.1_5'Flank	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	71					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				AAGGGCTGTTCCCTCAGCTGC	0.537													18	34					0	0	1	0	0
WDR35	57539	broad.mit.edu	37	2	20169345	20169345	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:20169345G>A	uc002rdi.2	-	9	1012	c.904C>T	c.(904-906)CCT>TCT	p.P302S	WDR35_uc002rdj.2_Missense_Mutation_p.P302S|WDR35_uc010ext.2_RNA|WDR35_uc002rdh.2_5'UTR	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	302										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCTTTCCAGGAACTTTCAAA	0.338													26	50					0	0	1	0	0
MATN3	4148	broad.mit.edu	37	2	20205896	20205896	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:20205896G>A	uc002rdl.2	-	2	462	c.399C>T	c.(397-399)ATC>ATT	p.I133I	MATN3_uc010exu.1_Silent_p.I133I	NM_002381	NP_002372	O15232	MATN3_HUMAN	matrilin 3 precursor	133	VWFA.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTTGGAACTCGATCTTCACAG	0.547													15	25					0	0	1	0	0
HS1BP3	64342	broad.mit.edu	37	2	20838369	20838369	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:20838369G>A	uc002rdw.1	-	4	491	c.450C>T	c.(448-450)TCC>TCT	p.S150S	HS1BP3_uc002rdx.2_Silent_p.S150S	NM_022460	NP_071905	Q53T59	H1BP3_HUMAN	HCLS1 binding protein 3	150					cell communication		phosphatidylinositol binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCAGGACAGAGGAATCTCTGC	0.567													16	43					0	0	1	0	0
C2orf43	60526	broad.mit.edu	37	2	20939734	20939734	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:20939734G>A	uc002rec.2	-	5	733	c.700C>T	c.(700-702)CTT>TTT	p.L234F	C2orf43_uc002rea.1_Missense_Mutation_p.L234F|C2orf43_uc002reb.1_RNA|C2orf43_uc010yka.1_Intron|C2orf43_uc010ykb.1_Missense_Mutation_p.L104F|C2orf43_uc010ykc.1_Missense_Mutation_p.L186F|C2orf43_uc010ykd.1_Intron|C2orf43_uc010yke.1_Missense_Mutation_p.L192F|C2orf43_uc010ykf.1_Missense_Mutation_p.L104F	NM_021925	NP_068744	Q9H6V9	CB043_HUMAN	hypothetical protein LOC60526	234											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGCTTACCAAGGCAGAATGGT	0.348													16	78					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21225122	21225122	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21225122G>A	uc002red.2	-	29	13300	c.13172C>T	c.(13171-13173)CCA>CTA	p.P4391L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4391					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AACTATACTTGGATCAAAATA	0.363													33	69					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21225438	21225438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21225438C>T	uc002red.2	-	29	12984	c.12856G>A	c.(12856-12858)GCC>ACC	p.A4286T		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4286					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GACTGAATGGCTTTAAATACC	0.348													45	114					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21225528	21225528	+	Missense_Mutation	SNP	C	T	T	rs61743313	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21225528C>T	uc002red.2	-	29	12894	c.12766G>A	c.(12766-12768)GAG>AAG	p.E4256K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4256					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCCTTAACTCGAAAGGAAGT	0.378													38	106					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21227219	21227219	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21227219G>A	uc002red.2	-	28	12137	c.12009C>T	c.(12007-12009)TCC>TCT	p.S4003S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4003					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTACGGCTGGGGAGGCTGCTG	0.502													17	88					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21227996	21227996	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21227996G>A	uc002red.2	-	26	11872	c.11744C>T	c.(11743-11745)TCC>TTC	p.S3915F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3915					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GCTGCATGTGGAATCCAGGAC	0.418													56	122					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21228515	21228515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21228515G>A	uc002red.2	-	26	11353	c.11225C>T	c.(11224-11226)TCA>TTA	p.S3742L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3742					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GACAAGAACTGAATTTAGATC	0.383													49	157					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21228550	21228550	+	Silent	SNP	G	A	A	rs75165693		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21228550G>A	uc002red.2	-	26	11318	c.11190C>T	c.(11188-11190)TTC>TTT	p.F3730F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3730					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAGGAATAATGAATTTATCAG	0.408													54	157					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21229058	21229058	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21229058G>A	uc002red.2	-	26	10810	c.10682C>T	c.(10681-10683)TCC>TTC	p.S3561F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3561					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTCCCAGAGGGAATATATGCG	0.458													22	58					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21229235	21229235	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21229235C>T	uc002red.2	-	26	10633	c.10505G>A	c.(10504-10506)GGT>GAT	p.G3502D		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3502	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAGAACCGAACCCTTGACATC	0.468													47	101					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21229706	21229706	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21229706G>A	uc002red.2	-	26	10162	c.10034C>T	c.(10033-10035)TCA>TTA	p.S3345L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3345					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GATGACACTTGATTTAAAGGA	0.368													42	136					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21229917	21229917	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21229917G>A	uc002red.2	-	26	9951	c.9823C>T	c.(9823-9825)CCA>TCA	p.P3275S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3275					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACTGCTTTTGGGAACACATAG	0.478													16	49					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230008	21230008	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21230008C>T	uc002red.2	-	26	9860	c.9732G>A	c.(9730-9732)AGG>AGA	p.R3244R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3244					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTGAAAGGTCCTGGGGAGCT	0.393													15	49					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230572	21230572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21230572C>T	uc002red.2	-	26	9296	c.9168G>A	c.(9166-9168)TTG>TTA	p.L3056L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3056					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AACGAACTTTCAAATTCCCTT	0.393													24	70					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230894	21230894	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21230894G>A	uc002red.2	-	26	8974	c.8846C>T	c.(8845-8847)ACC>ATC	p.T2949I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2949					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCCTTCTATGGTGAAACTAAT	0.448													54	177					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21231189	21231189	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21231189C>T	uc002red.2	-	26	8679	c.8551G>A	c.(8551-8553)GAG>AAG	p.E2851K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2851					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GATTTTCCCTCAATAGCATTT	0.413													58	220					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21231216	21231216	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21231216C>T	uc002red.2	-	26	8652	c.8524G>A	c.(8524-8526)GAA>AAA	p.E2842K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2842					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AACAGCATTTCACTCCCATGC	0.418													23	216					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21231233	21231233	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21231233C>T	uc002red.2	-	26	8635	c.8507G>A	c.(8506-8508)AGA>AAA	p.R2836K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2836					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGCTCCGTTCTCAGGTACTT	0.408													54	163					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21231373	21231373	+	Silent	SNP	G	A	A	rs149734450		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21231373G>A	uc002red.2	-	26	8495	c.8367C>T	c.(8365-8367)ATC>ATT	p.I2789I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2789					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGGAAGCTGCGATACCTGCTT	0.413													66	121					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21231577	21231577	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21231577G>A	uc002red.2	-	26	8291	c.8163C>T	c.(8161-8163)TTC>TTT	p.F2721F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2721				Missing (in Ref. 15; AAA51758).	cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTGGGATTATGAATTCTGGAA	0.428													80	190					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21232556	21232556	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21232556C>T	uc002red.2	-	26	7312	c.7184G>A	c.(7183-7185)GGA>GAA	p.G2395E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2395					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATCAATAAATCCAACCAATTT	0.313													8	25					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21232666	21232666	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21232666C>T	uc002red.2	-	26	7202	c.7074G>A	c.(7072-7074)ATG>ATA	p.M2358I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2358					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTAATTTATCCATTAAAACCT	0.373													14	60					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21232704	21232704	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21232704C>T	uc002red.2	-	26	7164	c.7036G>A	c.(7036-7038)GAG>AAG	p.E2346K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2346					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCATACCTCTCGATTAACTCA	0.373													23	90					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21233393	21233393	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21233393C>T	uc002red.2	-	26	6475	c.6347G>A	c.(6346-6348)GGA>GAA	p.G2116E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2116	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGGGAGTTTTCCCAGGGCTGC	0.383													17	44					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21233486	21233486	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21233486C>T	uc002red.2	-	26	6382	c.6254G>A	c.(6253-6255)CGA>CAA	p.R2085Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2085	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AATGGTTTGTCGATTCCTCTC	0.348													21	77					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21233769	21233769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21233769C>T	uc002red.2	-	26	6099	c.5971G>A	c.(5971-5973)GAA>AAA	p.E1991K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1991					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGGCTGTATTCATTGTTGTTA	0.463													31	95					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21234197	21234197	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21234197G>A	uc002red.2	-	26	5671	c.5543C>T	c.(5542-5544)TCA>TTA	p.S1848L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1848					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATAGCTTGCTGATAAGGCAGC	0.478													18	164					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21234549	21234550	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21234549_21234550CC>TT	uc002red.2	-	26	5318_5319	c.5190_5191GG>AA	c.(5188-5193)AAGGTC>AAAATC	p.V1731I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1731					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCTTGACTGACCTTGAAGTTGA	0.446													75	274					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21234769	21234769	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21234769C>T	uc002red.2	-	26	5099	c.4971G>A	c.(4969-4971)ACG>ACA	p.T1657T		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1657					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCAAGTTGGTCGTTGCACTGG	0.453													16	56					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21234891	21234891	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21234891C>T	uc002red.2	-	26	4977	c.4849G>A	c.(4849-4851)GGA>AGA	p.G1617R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1617					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTAGTGATCCAGAAAGCAGG	0.423													20	49					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21235097	21235097	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21235097G>A	uc002red.2	-	26	4771	c.4643C>T	c.(4642-4644)TCT>TTT	p.S1548F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1548					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTGCAGATCAGAGGTGGAGGT	0.433													25	89					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21235111	21235111	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21235111G>A	uc002red.2	-	26	4757	c.4629C>T	c.(4627-4629)TCC>TCT	p.S1543S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1543					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGGAGGTGAGGGAGAGGGTTC	0.468													24	78					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21235332	21235332	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21235332G>A	uc002red.2	-	26	4536	c.4408C>T	c.(4408-4410)CAT>TAT	p.H1470Y		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1470					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GAGTCCAAATGAACTGAAGCA	0.403													26	80					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21235486	21235486	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21235486G>A	uc002red.2	-	26	4382	c.4254C>T	c.(4252-4254)TTC>TTT	p.F1418F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1418				F -> S (in Ref. 5; CAA28420).	cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGATAGTGTGAACGTATTCT	0.348													28	67					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21236046	21236046	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21236046G>A	uc002red.2	-	25	4330	c.4202C>T	c.(4201-4203)TCC>TTC	p.S1401F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1401					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CACATTGTAGGAAAGCAGGTC	0.547													51	107					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21236075	21236075	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21236075C>T	uc002red.2	-	25	4301	c.4173G>A	c.(4171-4173)ATG>ATA	p.M1391I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1391					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGTCAGCCTTCATGTGGTAAC	0.532													58	120					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21245915	21245915	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21245915C>T	uc002red.2	-	18	2733	c.2605_splice	c.e18-1	p.M869_splice		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor						cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAGCCTGCATCTATAAGTCAG	0.473													29	72					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21249714	21249714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21249714G>A	uc002red.2	-	15	2318	c.2190C>T	c.(2188-2190)GTC>GTT	p.V730V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	730					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGACCTTAGAGACACCATCAG	0.413													33	96					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21251345	21251345	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21251345G>A	uc002red.2	-	13	1811	c.1683C>T	c.(1681-1683)GCC>GCT	p.A561A		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	561	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACATAAGATAGGCAGCCAGTC	0.443													23	130					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21252800	21252800	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21252800C>T	uc002red.2	-	11	1568	c.1440G>A	c.(1438-1440)GGG>GGA	p.G480G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	480	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AATCTTCATCCCCAGTGCAGT	0.418													48	160					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21255406	21255406	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21255406G>A	uc002red.2	-	10	1300	c.1172C>T	c.(1171-1173)TCC>TTC	p.S391F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	391	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GATGTGAGTGGAGCACTGAGG	0.527													18	48					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21263862	21263862	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21263862C>T	uc002red.2	-	4	459	c.331G>A	c.(331-333)GCC>ACC	p.A111T		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	111	Vitellogenin.|Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCAGCAAGGCTTTGCCCTCA	0.527													11	48					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21265245	21265245	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:21265245C>T	uc002red.2	-	3	353	c.225G>A	c.(223-225)AGG>AGA	p.R75R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	75	Vitellogenin.|Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGCAGTTGATCCTGGTGGCAC	0.587													34	89					0	0	1	0	0
MFSD2B	388931	broad.mit.edu	37	2	24239784	24239784	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:24239784C>T	uc002reo.1	+	4	431	c.417C>T	c.(415-417)AGC>AGT	p.S139S	MFSD2B_uc010exz.1_RNA	NM_001080473	NP_001073942	A6NFX1	MFS2B_HUMAN	major facilitator superfamily domain containing	139					transport	integral to membrane				ovary(2)	2						CCTTCACCAGCCTGCGAGGCC	0.662													6	81					0	0	1	0	0
MFSD2B	388931	broad.mit.edu	37	2	24245745	24245745	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:24245745G>A	uc002reo.1	+	10	1046	c.1032G>A	c.(1030-1032)GGG>GGA	p.G344G		NM_001080473	NP_001073942	A6NFX1	MFS2B_HUMAN	major facilitator superfamily domain containing	344					transport	integral to membrane				ovary(2)	2						AGCGCTTTGGGAAGAAGACGT	0.622													4	18					0	0	1	0	0
NCOA1	8648	broad.mit.edu	37	2	24930354	24930354	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:24930354C>T	uc002rfk.2	+	11	2273	c.2015C>T	c.(2014-2016)TCA>TTA	p.S672L	NCOA1_uc010eye.2_Missense_Mutation_p.S672L|NCOA1_uc002rfi.2_Missense_Mutation_p.S521L|NCOA1_uc002rfj.2_Missense_Mutation_p.S672L|NCOA1_uc002rfl.2_Missense_Mutation_p.S672L	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	672	Ser-rich.								PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCTAACTCTTCAGGAGGTTCT	0.488			T	PAX3	alveolar rhadomyosarcoma								31	89					0	0	1	0	0
NCOA1	8648	broad.mit.edu	37	2	24974859	24974859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:24974859C>T	uc002rfk.2	+	18	3973	c.3715C>T	c.(3715-3717)CCC>TCC	p.P1239S	NCOA1_uc010eye.2_Missense_Mutation_p.P1239S|NCOA1_uc002rfi.2_Missense_Mutation_p.P1088S|NCOA1_uc002rfj.2_Missense_Mutation_p.P1239S|NCOA1_uc002rfl.2_Missense_Mutation_p.P1239S|NCOA1_uc010eyf.2_Missense_Mutation_p.P132S	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	1239									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGAATGGTTCCCCAAGGTGA	0.418			T	PAX3	alveolar rhadomyosarcoma								33	63					0	0	1	0	0
ADCY3	109	broad.mit.edu	37	2	25057715	25057715	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:25057715C>T	uc002rfs.3	-	9	1952	c.1753G>A	c.(1753-1755)GAG>AAG	p.E585K	ADCY3_uc002rfr.3_Missense_Mutation_p.E218K|ADCY3_uc010ykm.1_Missense_Mutation_p.E585K	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	585	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					TGGTTGAGCTCGTGCTCATCT	0.662													6	22					0	0	1	0	0
ADCY3	109	broad.mit.edu	37	2	25141452	25141452	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:25141452G>A	uc002rfs.3	-	1	604	c.405C>T	c.(403-405)ACC>ACT	p.T135T	ADCY3_uc010ykm.1_Silent_p.T135T	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	135					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					GCACTCTGCGGGTGACCCGGT	0.627													7	92					0	0	1	0	0
POMC	5443	broad.mit.edu	37	2	25384054	25384054	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:25384054C>T	uc002rfy.1	-	4	963	c.700G>A	c.(700-702)GAC>AAC	p.D234N	POMC_uc002rfz.1_Missense_Mutation_p.D234N|POMC_uc002rga.1_Missense_Mutation_p.D234N	NM_001035256	NP_001030333	P01189	COLI_HUMAN	proopiomelanocortin preproprotein	234					cell-cell signaling|cellular nitrogen compound metabolic process|cellular pigmentation|generation of precursor metabolites and energy|hormone biosynthetic process|negative regulation of tumor necrosis factor production|neuropeptide signaling pathway|peptide hormone processing|positive regulation of transcription from RNA polymerase II promoter|regulation of appetite|regulation of blood pressure	extracellular space|stored secretory granule	hormone activity|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Hydrocortisone(DB00741)|Loperamide(DB00836)|Trilostane(DB01108)	TAGCGCTTGTCCTTGGGCGGG	0.637													4	42					0	0	1	0	0
POMC	5443	broad.mit.edu	37	2	25384191	25384191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:25384191C>T	uc002rfy.1	-	4	826	c.563G>A	c.(562-564)GGA>GAA	p.G188E	POMC_uc002rfz.1_Missense_Mutation_p.G188E|POMC_uc002rga.1_Missense_Mutation_p.G188E	NM_001035256	NP_001030333	P01189	COLI_HUMAN	proopiomelanocortin preproprotein	188					cell-cell signaling|cellular nitrogen compound metabolic process|cellular pigmentation|generation of precursor metabolites and energy|hormone biosynthetic process|negative regulation of tumor necrosis factor production|neuropeptide signaling pathway|peptide hormone processing|positive regulation of transcription from RNA polymerase II promoter|regulation of appetite|regulation of blood pressure	extracellular space|stored secretory granule	hormone activity|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Hydrocortisone(DB00741)|Loperamide(DB00836)|Trilostane(DB01108)	GGGGCCATCTCCCTCCCGGAG	0.706													6	8					0	0	1	0	0
DTNB	1838	broad.mit.edu	37	2	25678335	25678335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:25678335G>A	uc002rgh.2	-	11	1358	c.1108C>T	c.(1108-1110)CAC>TAC	p.H370Y	DTNB_uc002rgg.2_Intron|DTNB_uc010yko.1_Missense_Mutation_p.H313Y|DTNB_uc010ykp.1_Missense_Mutation_p.H166Y|DTNB_uc002rgo.2_Intron|DTNB_uc002rgi.2_Missense_Mutation_p.H370Y|DTNB_uc002rgj.2_Missense_Mutation_p.H370Y|DTNB_uc002rgk.2_Intron|DTNB_uc002rgl.2_Intron|DTNB_uc002rgq.2_Missense_Mutation_p.H370Y|DTNB_uc002rgm.2_Intron|DTNB_uc002rgn.2_Missense_Mutation_p.H166Y|DTNB_uc002rgr.1_Missense_Mutation_p.H359Y|DTNB_uc010ykq.1_Missense_Mutation_p.H223Y	NM_021907	NP_068707	O60941	DTNB_HUMAN	dystrobrevin, beta isoform 1	370						cytoplasm	calcium ion binding|zinc ion binding			large_intestine(2)|ovary(2)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCGGCCAAGTGACTGGGTATA	0.527													6	11					0	0	1	0	0
ASXL2	55252	broad.mit.edu	37	2	25965265	25965266	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:25965265_25965266GG>AA	uc002rgs.2	-	12	4161_4162	c.3940_3941CC>TT	c.(3940-3942)CCG>TTG	p.P1314L	ASXL2_uc002rgt.1_Missense_Mutation_p.P797L	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	1314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATACAACTTCGGGGTTTGCAGG	0.554													6	9					0	0	1	0	0
ASXL2	55252	broad.mit.edu	37	2	25994397	25994397	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:25994397G>A	uc002rgs.2	-	5	637	c.416C>T	c.(415-417)TCC>TTC	p.S139F	ASXL2_uc002rgt.1_5'UTR	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	139	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGACTGCGGGGAGGACGACGA	0.463													12	41					0	0	1	0	0
KIF3C	3797	broad.mit.edu	37	2	26203890	26203890	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26203890G>A	uc002rgu.2	-	1	1554	c.897C>T	c.(895-897)GCC>GCT	p.A299A	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Silent_p.A299A	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	299	Kinesin-motor.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGTTGCCCAGGGCAGATAATG	0.478													10	42					0	0	1	0	0
KIF3C	3797	broad.mit.edu	37	2	26204076	26204076	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26204076G>A	uc002rgu.2	-	1	1368	c.711C>T	c.(709-711)ATC>ATT	p.I237I	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Silent_p.I237I	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	237	Kinesin-motor.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGCCCACTCGGATGTGGTCCT	0.612													27	47					0	0	1	0	0
HADHB	3032	broad.mit.edu	37	2	26486319	26486319	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26486319C>T	uc002rgz.2	+	4	432	c.181C>T	c.(181-183)CGC>TGC	p.R61C	HADHB_uc010yku.1_RNA|HADHB_uc010ykv.1_Missense_Mutation_p.R39C|HADHB_uc010ykw.1_Missense_Mutation_p.R61C|HADHB_uc002rha.2_Missense_Mutation_p.R61C	NM_000183	NP_000174	P55084	ECHB_HUMAN	mitochondrial trifunctional protein, beta	61			R -> C (in TFP deficiency).|R -> H (in TFP deficiency).		fatty acid beta-oxidation	mitochondrial nucleoid	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acyltransferase activity|enoyl-CoA hydratase activity|protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGATGGTGTTCGCACTCCATT	0.348													37	105					0	0	1	0	0
GPR113	165082	broad.mit.edu	37	2	26537451	26537451	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26537451C>T	uc002rhe.3	-	7	963	c.963G>A	c.(961-963)TGG>TGA	p.W321*	GPR113_uc010yky.1_Nonsense_Mutation_p.W252*|GPR113_uc002rhb.1_Intron|GPR113_uc010eyk.1_Nonsense_Mutation_p.W122*|GPR113_uc002rhc.1_Intron|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	321	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CATACAGGTTCCACTTGAAGC	0.602													14	38					0	0	1	0	0
C2orf39	92749	broad.mit.edu	37	2	26673526	26673526	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26673526C>T	uc002rhg.2	+	13	1740	c.1666C>T	c.(1666-1668)CAC>TAC	p.H556Y		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	556											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATATCGAGCTCACCGTTTATC	0.368													27	111					0	0	1	0	0
C2orf39	92749	broad.mit.edu	37	2	26676280	26676281	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26676280_26676281GG>AA	uc002rhg.2	+	14	1856_1857	c.1782_1783GG>AA	c.(1780-1785)ATGGAG>ATAAAG	p.594_595ME>IK		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	594_595	Glu-rich.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					agacggagatggagggagaaaa	0.347													28	69					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26697485	26697485	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26697485C>T	uc002rhk.2	-	26	3311	c.3184G>A	c.(3184-3186)GAG>AAG	p.E1062K	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Missense_Mutation_p.E315K|OTOF_uc002rhi.2_Missense_Mutation_p.E372K|OTOF_uc002rhj.2_Missense_Mutation_p.E315K	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1062	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGTACGCCTCGTCTGCCATC	0.607													15	40					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26739344	26739344	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26739344C>T	uc002rhk.2	-	5	578	c.451G>A	c.(451-453)GGA>AGA	p.G151R	OTOF_uc010ylb.1_RNA	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	151	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGAGCAGTCCATCCGTCTCT	0.632													29	123					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26760609	26760609	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26760609C>G	uc002rhk.2	-	2	240	c.113G>C	c.(112-114)TGT>TCT	p.C38S		NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	38	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CACATCCTCACAGTTCTCCAG	0.577													3	7					0	0	1	0	0
CIB4	130106	broad.mit.edu	37	2	26806663	26806663	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26806663C>T	uc002rhm.2	-	5	461	c.432G>A	c.(430-432)ACG>ACA	p.T144T		NM_001029881	NP_001025052	A0PJX0	CIB4_HUMAN	calcium and integrin binding family member 4	144	EF-hand 3.						calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACACGTGGTTCGTGAGGTCCA	0.582													15	76					0	0	1	0	0
CIB4	130106	broad.mit.edu	37	2	26863423	26863423	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:26863423G>A	uc002rhm.2	-	2	96	c.67C>T	c.(67-69)CTG>TTG	p.L23L		NM_001029881	NP_001025052	A0PJX0	CIB4_HUMAN	calcium and integrin binding family member 4	23							calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTCTGGTCAGGAAGGTCAGG	0.567													32	145					0	0	1	0	0
DPYSL5	56896	broad.mit.edu	37	2	27121488	27121488	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27121488G>A	uc002rhu.3	+	2	279	c.121G>A	c.(121-123)GAG>AAG	p.E41K	DPYSL5_uc002rhv.3_Missense_Mutation_p.E41K	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	41					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTGGGCCGCGAGCTCATGAT	0.582													23	67					0	0	1	0	0
DPYSL5	56896	broad.mit.edu	37	2	27147881	27147881	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27147881C>A	uc002rhu.3	+	3	546	c.388C>A	c.(388-390)CTC>ATC	p.L130I	DPYSL5_uc002rhv.3_Missense_Mutation_p.L130I	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	130					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGATTACGCCCTCCACGTGGG	0.607													13	33					0.000151284	0.000151467	1	1	0
DPYSL5	56896	broad.mit.edu	37	2	27147884	27147884	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27147884C>T	uc002rhu.3	+	3	549	c.391C>T	c.(391-393)CAC>TAC	p.H131Y	DPYSL5_uc002rhv.3_Missense_Mutation_p.H131Y	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	131					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTACGCCCTCCACGTGGGGAT	0.612													12	32					0	0	1	0	0
DPYSL5	56896	broad.mit.edu	37	2	27150156	27150156	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27150156G>A	uc002rhu.3	+	4	614	c.456G>A	c.(454-456)AAG>AAA	p.K152K	DPYSL5_uc002rhv.3_Silent_p.K152K	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	152					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGAGGGAGAAGGGTGTCAACT	0.537													7	21					0	0	1	0	0
DPYSL5	56896	broad.mit.edu	37	2	27151149	27151149	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27151149G>A	uc002rhu.3	+	5	785	c.627G>A	c.(625-627)GGG>GGA	p.G209G	DPYSL5_uc002rhv.3_Silent_p.G209G	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	209					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGATTTGGGGATCACAGGCC	0.478													11	36					0	0	1	0	0
DPYSL5	56896	broad.mit.edu	37	2	27151188	27151188	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27151188G>A	uc002rhu.3	+	5	824	c.666G>A	c.(664-666)GAG>GAA	p.E222E	DPYSL5_uc002rhv.3_Silent_p.E222E	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	222					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCGTCCAGAGGAGGTGAGAA	0.453													8	32					0	0	1	0	0
DPYSL5	56896	broad.mit.edu	37	2	27167606	27167606	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27167606G>A	uc002rhu.3	+	12	1681	c.1523G>A	c.(1522-1524)GGA>GAA	p.G508E	DPYSL5_uc002rhv.3_Missense_Mutation_p.G508E	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	508					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAAGAGATGGGAACCCCACTC	0.582													31	95					0	0	1	0	0
DPYSL5	56896	broad.mit.edu	37	2	27167664	27167664	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27167664C>T	uc002rhu.3	+	12	1739	c.1581C>T	c.(1579-1581)GAC>GAT	p.D527D	DPYSL5_uc002rhv.3_Silent_p.D527D	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	527					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCATGAGGGACCTTCACGAAT	0.622													28	69					0	0	1	0	0
TMEM214	54867	broad.mit.edu	37	2	27260509	27260509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27260509C>T	uc002ria.3	+	9	1201	c.1091C>T	c.(1090-1092)ACC>ATC	p.T364I	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Missense_Mutation_p.T319I	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	364						integral to membrane	protein binding				0						ACCCTGCATACCTACTTCCCT	0.577													49	113					0	0	1	0	0
EMILIN1	11117	broad.mit.edu	37	2	27302010	27302010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27302010C>T	uc002rii.3	+	1	505	c.77C>T	c.(76-78)CCT>CTT	p.P26L	EMILIN1_uc010eyq.1_Missense_Mutation_p.P26L	NM_007046	NP_008977	Q9Y6C2	EMIL1_HUMAN	elastin microfibril interfacer 1 precursor	26					cell adhesion	collagen				pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGCTACCCTCCTCGAGGTTTC	0.716													12	25					0	0	1	0	0
KHK	3795	broad.mit.edu	37	2	27322557	27322557	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27322557G>A	uc002ril.2	+	8	1353	c.836G>A	c.(835-837)AGA>AAA	p.R279K	KHK_uc002rim.2_Missense_Mutation_p.R279K|KHK_uc002rin.2_Missense_Mutation_p.R280K|KHK_uc002rio.2_Missense_Mutation_p.R195K|CGREF1_uc010ylf.1_3'UTR|CGREF1_uc002rip.1_3'UTR	NM_000221	NP_000212	P50053	KHK_HUMAN	ketohexokinase isoform a	279					fructose catabolic process	cytosol	ATP binding|ketohexokinase activity|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAAGCACTGAGATTCGGGTGC	0.617													15	32					0	0	1	0	0
CGREF1	10669	broad.mit.edu	37	2	27324423	27324423	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27324423C>T	uc010eys.1	-	6	818	c.676G>A	c.(676-678)GAG>AAG	p.E226K	CGREF1_uc010ylf.1_Intron|CGREF1_uc002rip.1_Intron|CGREF1_uc002riq.2_Missense_Mutation_p.E226K|CGREF1_uc010eyr.1_Missense_Mutation_p.E348K|CGREF1_uc002rir.1_Missense_Mutation_p.E226K|CGREF1_uc002ris.2_Intron	NM_006569	NP_006560	Q99674	CGRE1_HUMAN	cell growth regulator with EF-hand domain 1	226					cell adhesion|cell cycle arrest|negative regulation of cell proliferation|response to stress	extracellular region	calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCTGGCCCTCAGCTTCCCCT	0.672													133	270					0	0	1	0	0
PREB	10113	broad.mit.edu	37	2	27354630	27354630	+	Missense_Mutation	SNP	G	A	A	rs150589957	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27354630G>A	uc002rix.1	-	8	1322	c.1069C>T	c.(1069-1071)CGT>TGT	p.R357C	PREB_uc002riy.1_Missense_Mutation_p.R285C|PREB_uc002riz.1_RNA|PREB_uc002rja.1_Missense_Mutation_p.R299C	NM_013388	NP_037520	Q9HCU5	PREB_HUMAN	prolactin regulatory element binding protein	357	Cytoplasmic (Potential).				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane|nucleus	DNA binding|guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCTGGACCACGACCCTTCTCA	0.567													68	168					0	0	1	0	0
C2orf53	339779	broad.mit.edu	37	2	27360043	27360043	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27360043G>A	uc002rjb.2	-	3	1735	c.1155C>T	c.(1153-1155)GTC>GTT	p.V385V	PREB_uc002rix.1_5'Flank|PREB_uc002riy.1_5'Flank|PREB_uc002riz.1_5'Flank|PREB_uc002rja.1_5'Flank	NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	385											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGAGGTAGTGACCTGTTTTG	0.582													32	83					0	0	1	0	0
C2orf53	339779	broad.mit.edu	37	2	27360233	27360233	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27360233C>T	uc002rjb.2	-	3	1545	c.965G>A	c.(964-966)GGG>GAG	p.G322E	PREB_uc002rix.1_5'Flank|PREB_uc002riy.1_5'Flank|PREB_uc002riz.1_5'Flank|PREB_uc002rja.1_5'Flank	NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	322											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCCTGAGGCCCTGCTTCCTT	0.672													22	69					0	0	1	0	0
C2orf53	339779	broad.mit.edu	37	2	27360240	27360240	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27360240C>T	uc002rjb.2	-	3	1538	c.958G>A	c.(958-960)GAA>AAA	p.E320K	PREB_uc002rix.1_5'Flank|PREB_uc002riy.1_5'Flank|PREB_uc002riz.1_5'Flank|PREB_uc002rja.1_5'Flank	NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	320											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCCTGCTTCCTTCGGCCTT	0.667													25	60					0	0	1	0	0
C2orf53	339779	broad.mit.edu	37	2	27360640	27360640	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27360640G>A	uc002rjb.2	-	3	1138	c.558C>T	c.(556-558)TCC>TCT	p.S186S		NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	186											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGGGGACCCGGACCCAGTGT	0.637													21	60					0	0	1	0	0
C2orf53	339779	broad.mit.edu	37	2	27360859	27360859	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27360859G>T	uc002rjb.2	-	3	919	c.339C>A	c.(337-339)CCC>CCA	p.P113P		NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	113	Pro-rich.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					agtggttggagggagaggatg	0.159													5	17					0.014758	0.0147612	1	1	0
C2orf53	339779	broad.mit.edu	37	2	27361019	27361019	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27361019G>A	uc002rjb.2	-	3	759	c.179C>T	c.(178-180)TCC>TTC	p.S60F		NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	60	Pro-rich.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGAGGGGAGGAGGGACGACG	0.572													7	28					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27444208	27444208	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27444208C>T	uc002rji.2	+	3	507	c.345C>T	c.(343-345)GGC>GGT	p.G115G	CAD_uc010eyw.2_Silent_p.G115G	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	115	GATase (Glutamine amidotransferase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	GCATCCCTGGCTTGCAAGGTA	0.567													10	19					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27455079	27455079	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27455079C>T	uc002rji.2	+	17	2794	c.2632C>T	c.(2632-2634)CTT>TTT	p.L878F	CAD_uc010eyw.2_Missense_Mutation_p.L815F	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	878	CPSase (Carbamoyl-phosphate synthase).|CPSase A.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	ACAGATTGCCCTTGCAGTTCT	0.567													22	79					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27456001	27456001	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27456001C>T	uc002rji.2	+	19	3146	c.2984C>T	c.(2983-2985)TCT>TTT	p.S995F	CAD_uc010eyw.2_Missense_Mutation_p.S932F	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	995	CPSase B.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	GATGAGATCTCTTTTGAGGTG	0.488													16	34					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27458130	27458130	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27458130C>T	uc002rji.2	+	24	3966	c.3804C>T	c.(3802-3804)TTC>TTT	p.F1268F	CAD_uc010eyw.2_Silent_p.F1205F	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1268	CPSase B.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	AGTTCTCCTTCTCCCGCTTGG	0.617													9	76					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27458232	27458232	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27458232C>T	uc002rji.2	+	24	4068	c.3906C>T	c.(3904-3906)GCC>GCT	p.A1302A	CAD_uc010eyw.2_Silent_p.A1239A	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1302	CPSase B.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	ACCTCAAGGCCATGCTAAGCA	0.582													44	88					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27458257	27458257	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27458257C>T	uc002rji.2	+	24	4093	c.3931C>T	c.(3931-3933)CCC>TCC	p.P1311S	CAD_uc010eyw.2_Missense_Mutation_p.P1248S	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1311	CPSase B.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	CTTTAAGATCCCCAAGAAGAA	0.572													14	108					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27465590	27465590	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27465590C>T	uc002rji.2	+	41	6487	c.6325C>T	c.(6325-6327)CTG>TTG	p.L2109L	CAD_uc010eyw.2_Silent_p.L2046L	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	2109	ATCase (Aspartate transcarbamylase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	ACCTCCCAGCCTGCGCATGCC	0.652													6	72					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27465619	27465619	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27465619C>T	uc002rji.2	+	41	6516	c.6354C>T	c.(6352-6354)TTC>TTT	p.F2118F	CAD_uc010eyw.2_Silent_p.F2055F	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	2118	ATCase (Aspartate transcarbamylase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	TGCGGGCCTTCGTGGCCTCCC	0.657													24	45					0	0	1	0	0
TRIM54	57159	broad.mit.edu	37	2	27505662	27505662	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27505662G>A	uc002rjo.2	+	1	63	c.63G>A	c.(61-63)GAG>GAA	p.E21E	TRIM54_uc002rjn.2_Silent_p.E21E	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	21					cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACAACCTGGAGAAGCAGCTCA	0.592													74	196					0	0	1	0	0
TRIM54	57159	broad.mit.edu	37	2	27528496	27528496	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27528496G>A	uc002rjo.2	+	5	654	c.654G>A	c.(652-654)GAG>GAA	p.E218E	TRIM54_uc002rjn.2_Silent_p.E260E	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	218					cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAGGTTTGAGAGCCTGTGCG	0.627													13	13					0	0	1	0	0
TRIM54	57159	broad.mit.edu	37	2	27529141	27529141	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27529141G>A	uc002rjo.2	+	7	927	c.927G>A	c.(925-927)ATG>ATA	p.M309I	TRIM54_uc002rjn.2_Missense_Mutation_p.M351I	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	309	COS.				cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATGAGAGCATGGAGCAATTCA	0.652													17	51					0	0	1	0	0
MPV17	4358	broad.mit.edu	37	2	27532804	27532804	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27532804C>A	uc002rjr.2	-	7	554	c.507G>T	c.(505-507)CTG>CTT	p.L169L	UCN_uc002rjp.1_5'Flank|MPV17_uc002rjq.2_Missense_Mutation_p.V152F|MPV17_uc002rjs.2_Silent_p.L169L|MPV17_uc002rjt.2_RNA	NM_002437	NP_002428	P39210	MPV17_HUMAN	Mpv17 protein	169					cellular response to reactive oxygen species|glomerular basement membrane development|homeostatic process|inner ear development|mitochondrial genome maintenance|regulation of reactive oxygen species metabolic process	integral to peroxisomal membrane|mitochondrial inner membrane					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTTCCAGGACAGGTAGGAGT	0.517													13	36					0.00010058	0.000100705	1	1	0
NRBP1	29959	broad.mit.edu	37	2	27656267	27656267	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27656267C>T	uc002rko.2	+	3	959	c.127C>T	c.(127-129)CCA>TCA	p.P43S	NRBP1_uc002rkq.2_Missense_Mutation_p.P43S|NRBP1_uc002rkp.2_Missense_Mutation_p.P43S|NRBP1_uc002rkr.2_5'Flank	NM_013392	NP_037524	Q9UHY1	NRBP_HUMAN	nuclear receptor binding protein	43					ER to Golgi vesicle-mediated transport|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cell cortex|endomembrane system|lamellipodium|membrane|nucleoplasm	ATP binding|protein homodimerization activity|protein kinase activity			ovary(2)|lung(1)	3	Acute lymphoblastic leukemia(172;0.155)					AGCTGCTTCCCCAGAGGAAGA	0.522													13	80					0	0	1	0	0
IFT172	26160	broad.mit.edu	37	2	27672907	27672907	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27672907C>A	uc002rku.2	-	36	4059	c.4008G>T	c.(4006-4008)CTG>CTT	p.L1336L	IFT172_uc010ezb.2_RNA	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1336					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					GTCCTACAGCCAGAACGACTT	0.473													18	55					3.41278e-10	3.42441e-10	1	1	0
IFT172	26160	broad.mit.edu	37	2	27681043	27681043	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27681043G>A	uc002rku.2	-	27	2976	c.2925C>T	c.(2923-2925)ATC>ATT	p.I975I		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	975	TPR 7.				cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					GGGCCTGAGTGATGTATAGCA	0.552													11	121					0	0	1	0	0
IFT172	26160	broad.mit.edu	37	2	27699589	27699589	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27699589G>A	uc002rku.2	-	14	1381	c.1330C>T	c.(1330-1332)CGT>TGT	p.R444C	IFT172_uc002rkw.2_Missense_Mutation_p.R444C|IFT172_uc010yls.1_Missense_Mutation_p.R423C|IFT172_uc010ezc.2_Missense_Mutation_p.R444C|IFT172_uc002rkv.2_Missense_Mutation_p.R418C	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	444					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TCATTAATACGAACACTGAAA	0.373													29	63					0	0	1	0	0
FNDC4	64838	broad.mit.edu	37	2	27715556	27715556	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27715556C>T	uc002rkx.2	-	6	1052	c.646G>A	c.(646-648)GGA>AGA	p.G216R	IFT172_uc002rku.2_5'Flank|IFT172_uc002rkw.2_5'Flank|IFT172_uc010yls.1_5'Flank|IFT172_uc010ezc.2_5'Flank|IFT172_uc002rkv.2_5'Flank|IFT172_uc010ylt.1_5'Flank	NM_022823	NP_073734	Q9H6D8	FNDC4_HUMAN	fibronectin type III domain containing 4	216	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(172;0.155)					ACTGGCCTTCCCTGAGGACTC	0.557													35	144					0	0	1	0	0
FNDC4	64838	broad.mit.edu	37	2	27716878	27716878	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27716878C>T	uc002rkx.2	-	4	779	c.373G>A	c.(373-375)GGA>AGA	p.G125R	GCKR_uc002rky.2_5'Flank|GCKR_uc010ezd.2_5'Flank|GCKR_uc010ylu.1_5'Flank	NM_022823	NP_073734	Q9H6D8	FNDC4_HUMAN	fibronectin type III domain containing 4	125	Extracellular (Potential).|Fibronectin type-III.					integral to membrane					0	Acute lymphoblastic leukemia(172;0.155)					GGACTCTCTCCCCGAAGGCCG	0.607													17	85					0	0	1	0	0
GCKR	2646	broad.mit.edu	37	2	27720202	27720202	+	Missense_Mutation	SNP	G	A	A	rs148289865		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27720202G>A	uc002rky.2	+	2	218	c.152G>A	c.(151-153)CGA>CAA	p.R51Q	FNDC4_uc002rkx.2_5'Flank|GCKR_uc010ezd.2_Missense_Mutation_p.R51Q|GCKR_uc010ylu.1_5'UTR	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	51					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					AACATTGTTCGACTGCTAGGG	0.517													30	50					0	0	1	0	0
GCKR	2646	broad.mit.edu	37	2	27728588	27728588	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27728588G>A	uc002rky.2	+	10	820	c.754G>A	c.(754-756)GAG>AAG	p.E252K	GCKR_uc010ezd.2_Missense_Mutation_p.E252K|GCKR_uc010ylu.1_Missense_Mutation_p.E62K	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	252	SIS 1.				carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					TCTTCAGCCCGAGGGTCTCAG	0.542													30	69					0	0	1	0	0
GCKR	2646	broad.mit.edu	37	2	27745364	27745364	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27745364G>A	uc002rky.2	+	18	1676	c.1610G>A	c.(1609-1611)AGC>AAC	p.S537N	GCKR_uc010ezd.2_Missense_Mutation_p.S535N|GCKR_uc010ylu.1_Missense_Mutation_p.S347N	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	537					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					TGCATCGAGAGCCTCCTCCGA	0.527													23	85					0	0	1	0	0
GCKR	2646	broad.mit.edu	37	2	27746305	27746305	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27746305G>A	uc002rky.2	+	19	1943	c.1877G>A	c.(1876-1878)TGA>TAA	p.*626*	GCKR_uc010ezd.2_Silent_p.*624*|GCKR_uc010ylu.1_Silent_p.*436*	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	626					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					GACGTTCAGTGAACCCATGTT	0.612													16	45					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27800631	27800631	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27800631C>T	uc002rkz.3	+	1	1243	c.1192C>T	c.(1192-1194)CAA>TAA	p.Q398*		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	398										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					GTTAGGACATCAAGTCCCAGA	0.438													37	71					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27801613	27801613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27801613G>A	uc002rkz.3	+	1	2225	c.2174G>A	c.(2173-2175)GGG>GAG	p.G725E		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	725										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TTACAAGTAGGGACTGACTTC	0.428													37	88					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27801932	27801932	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27801932G>A	uc002rkz.3	+	1	2544	c.2493G>A	c.(2491-2493)ATG>ATA	p.M831I		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	831										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					GGAAGCAAATGGAGGAGCTAG	0.438													38	103					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27802502	27802502	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27802502G>A	uc002rkz.3	+	1	3114	c.3063G>A	c.(3061-3063)GGG>GGA	p.G1021G		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1021										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CATGTGCAGGGGGCCAGCTTC	0.438													16	92					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27802752	27802752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27802752G>A	uc002rkz.3	+	1	3364	c.3313G>A	c.(3313-3315)GAT>AAT	p.D1105N		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1105										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					AATACCCCCCGATGTGCCTCC	0.453													24	103					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27802836	27802836	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27802836C>T	uc002rkz.3	+	1	3448	c.3397C>T	c.(3397-3399)CAT>TAT	p.H1133Y		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1133										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					ACTTAATTGCCATCATAAATT	0.493													69	151					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27803388	27803388	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27803388G>A	uc002rkz.3	+	1	4000	c.3949G>A	c.(3949-3951)GAA>AAA	p.E1317K	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1317										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TCCTTCTAGGGAATTAGCAGC	0.398													13	64					0	0	1	0	0
ZNF512	84450	broad.mit.edu	37	2	27838116	27838116	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27838116C>T	uc002rla.2	+	11	1300	c.1213C>T	c.(1213-1215)CGT>TGT	p.R405C	ZNF512_uc010ylv.1_Missense_Mutation_p.R326C|ZNF512_uc010ylw.1_Missense_Mutation_p.R376C|ZNF512_uc002rlb.2_Missense_Mutation_p.R326C|ZNF512_uc010ylx.1_Missense_Mutation_p.R326C|ZNF512_uc002rlc.2_Missense_Mutation_p.R326C|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_Missense_Mutation_p.R298C	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	405					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GAAATATCATCGTATTCAGTG	0.279													38	153					0	0	1	0	0
ZNF512	84450	broad.mit.edu	37	2	27844028	27844028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27844028C>T	uc002rla.2	+	14	1491	c.1404C>T	c.(1402-1404)TTC>TTT	p.F468F	ZNF512_uc010ylv.1_Silent_p.F389F|ZNF512_uc010ylw.1_Silent_p.F439F|ZNF512_uc002rlb.2_Silent_p.F389F|ZNF512_uc010ylx.1_Silent_p.F389F|ZNF512_uc002rlc.2_Silent_p.F389F|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_Silent_p.F361F	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	468					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					AGGACTGGTTCGTTGTAAACC	0.418													22	74					0	0	1	0	0
CCDC121	79635	broad.mit.edu	37	2	27850325	27850325	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27850325C>T	uc002rle.2	-	2	523	c.342G>A	c.(340-342)AAG>AAA	p.K114K	ZNF512_uc010yly.1_Intron|CCDC121_uc010eze.2_Silent_p.K278K|CCDC121_uc002rld.2_Silent_p.K276K|GPN1_uc010ezf.2_5'Flank|GPN1_uc010yma.1_5'Flank|GPN1_uc010ymb.1_5'Flank|GPN1_uc010ymc.1_5'Flank|GPN1_uc010ymd.1_5'Flank|GPN1_uc010yme.1_5'Flank|GPN1_uc010ezg.1_5'Flank	NM_024584	NP_078860	Q6ZUS5	CC121_HUMAN	coiled-coil domain containing 121 isoform 3	114	Potential.										0	Acute lymphoblastic leukemia(172;0.155)					CCTGCTTTTCCTTTAATATAG	0.433													90	230					0	0	1	0	0
SLC4A1AP	22950	broad.mit.edu	37	2	27907940	27907940	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27907940C>T	uc002rlk.3	+	10	2194	c.1912C>T	c.(1912-1914)CTA>TTA	p.L638L		NM_018158	NP_060628	Q9BWU0	NADAP_HUMAN	solute carrier family 4 (anion exchanger),	638						cytoplasm|nucleus	double-stranded RNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)					CCCTCCAACTCTAATGAGAAT	0.294													17	103					0	0	1	0	0
SLC4A1AP	22950	broad.mit.edu	37	2	27911626	27911626	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:27911626C>T	uc002rlk.3	+	12	2545	c.2263C>T	c.(2263-2265)CCA>TCA	p.P755S		NM_018158	NP_060628	Q9BWU0	NADAP_HUMAN	solute carrier family 4 (anion exchanger),	755						cytoplasm|nucleus	double-stranded RNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)					AACACCTGGTCCAGGCAAAGT	0.353													11	49					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28755047	28755048	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:28755047_28755048CC>TT	uc002rmb.1	+	9	541_542	c.541_542CC>TT	c.(541-543)CCC>TTC	p.P181F	PLB1_uc010ezj.1_Missense_Mutation_p.P181F	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	181	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TTACCTGTGCCCCTCTGCTCAA	0.48													33	158					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28761201	28761201	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:28761201G>A	uc002rmb.1	+	10	571	c.571G>A	c.(571-573)GGC>AGC	p.G191S	PLB1_uc010ezj.1_Missense_Mutation_p.G202S	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	191	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GCTTGCGGCGGGCGGCGTGGA	0.652													13	21					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28764623	28764623	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:28764623C>T	uc002rmb.1	+	13	824	c.824C>T	c.(823-825)TCC>TTC	p.S275F	PLB1_uc010ezj.1_Missense_Mutation_p.S286F	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	275	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GAGCAGGAGTCCTTCACCGTG	0.562													18	38					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28802509	28802509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:28802509G>A	uc002rmb.1	+	23	1501	c.1501G>A	c.(1501-1503)GAA>AAA	p.E501K	PLB1_uc010ezj.1_Missense_Mutation_p.E512K|PLB1_uc002rmc.2_Missense_Mutation_p.E189K|PLB1_uc002rmd.1_Missense_Mutation_p.E11K	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	501	4 X 308-326 AA approximate repeats.|2.|Extracellular (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					ACACTTTCAGGAAGACTGGAA	0.423													46	76					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28805325	28805325	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:28805325G>A	uc002rmb.1	+	25	1686	c.1686G>A	c.(1684-1686)AGG>AGA	p.R562R	PLB1_uc010ezj.1_Silent_p.R551R|PLB1_uc002rmc.2_Silent_p.R250R|PLB1_uc002rmd.1_Silent_p.R72R	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	562	4 X 308-326 AA approximate repeats.|2.|Extracellular (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TCAACCTGAGGGAGCTGTACC	0.517													5	12					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28828806	28828806	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:28828806G>A	uc002rmb.1	+	42	3048	c.3048G>A	c.(3046-3048)TGG>TGA	p.W1016*	PLB1_uc010ezj.1_Nonsense_Mutation_p.W1005*|PLB1_uc002rme.1_Intron|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1016	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|3.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GAGCCCTTTGGACCAATATGG	0.522													58	141					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28865888	28865888	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:28865888G>A	uc002rmb.1	+	58	4338	c.4338G>A	c.(4336-4338)AGG>AGA	p.R1446R	PLB1_uc010ezj.1_Silent_p.R1435R|PLB1_uc002rme.1_Silent_p.R411R|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1446	Cytoplasmic (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GTGGCCGGAGGGAAGATCCTC	0.652													6	6					0	0	1	0	0
WDR43	23160	broad.mit.edu	37	2	29135488	29135488	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29135488C>T	uc002rmo.2	+	4	550	c.518C>T	c.(517-519)TCC>TTC	p.S173F	SNORD92_uc002rmp.1_5'Flank	NM_015131	NP_055946	Q15061	WDR43_HUMAN	WD repeat domain 43	173	WD 4.					nucleolus				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					AGTGTCAGTTCCCTATGTATC	0.398													32	59					0	0	1	0	0
FAM179A	165186	broad.mit.edu	37	2	29222072	29222072	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29222072C>T	uc010ezl.2	+	4	516	c.165C>T	c.(163-165)GCC>GCT	p.A55A	FAM179A_uc010ymm.1_Silent_p.A55A	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	55							binding			ovary(3)|skin(1)	4						AGCCAAGAGCCCTGCTGAACA	0.622													6	20					0	0	1	0	0
FAM179A	165186	broad.mit.edu	37	2	29226487	29226487	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29226487C>T	uc010ezl.2	+	6	1120	c.769C>T	c.(769-771)CTT>TTT	p.L257F	FAM179A_uc010ymm.1_Missense_Mutation_p.L257F	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	257							binding			ovary(3)|skin(1)	4						GCCTGGCTCCCTTCCCAGCCC	0.622													5	13					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29293604	29293604	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29293604G>A	uc002rmt.1	-	1	3524	c.3524C>T	c.(3523-3525)TCG>TTG	p.S1175L		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	1175					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TCTCCGCTGCGAGTCTGCTCT	0.657													17	58					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29294506	29294507	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29294506_29294507CC>TT	uc002rmt.1	-	1	2621_2622	c.2621_2622GG>AA	c.(2620-2622)AGG>AAA	p.R874K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	874					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CCCATGTTCTCCTGGTGGGGCC	0.624													23	66					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29295045	29295045	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29295045C>T	uc002rmt.1	-	1	2083	c.2083G>A	c.(2083-2085)GAA>AAA	p.E695K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	695					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TTGCCTTGTTCGTCCTCAGGA	0.537													25	103					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29295578	29295578	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29295578G>A	uc002rmt.1	-	1	1550	c.1550C>T	c.(1549-1551)TCA>TTA	p.S517L		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	517					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GTCAGCAGGTGAAGATTGTGG	0.542													56	94					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29296383	29296383	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29296383C>T	uc002rmt.1	-	1	745	c.745G>A	c.(745-747)GAG>AAG	p.E249K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	249					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GCCAGATCCTCCCTGACTTCC	0.552													27	65					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29296878	29296878	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29296878C>T	uc002rmt.1	-	1	250	c.250G>A	c.(250-252)GGC>AGC	p.G84S		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	84					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TTCCTTTTGCCTGAAGCAGGA	0.507													17	165					0	0	1	0	0
CLIP4	79745	broad.mit.edu	37	2	29354130	29354130	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29354130C>T	uc002rmv.2	+	3	379	c.140C>T	c.(139-141)TCT>TTT	p.S47F	CLIP4_uc002rmu.2_Missense_Mutation_p.S47F|CLIP4_uc010ezm.1_Missense_Mutation_p.S47F|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.S29F	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	47										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TCAGAATTTTCTTTCTTTGAT	0.249													16	36					0	0	1	0	0
CLIP4	79745	broad.mit.edu	37	2	29368177	29368177	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29368177G>A	uc002rmv.2	+	8	1204	c.965G>A	c.(964-966)GGA>GAA	p.G322E	CLIP4_uc002rmu.2_Missense_Mutation_p.G322E|CLIP4_uc010ezm.1_Missense_Mutation_p.G322E|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.G304E	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	322	CAP-Gly 1.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GAACCAGAAGGAAAAAATAAT	0.348													17	68					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29416375	29416375	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29416375C>T	uc002rmy.2	-	29	5485	c.4578G>A	c.(4576-4578)GAG>GAA	p.E1526E	ALK_uc010ymo.1_Silent_p.E458E	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1526	Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	TGTCGTGTGGCTCCTTCTTTG	0.547			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				91	242					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29416472	29416472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29416472C>T	uc002rmy.2	-	29	5388	c.4481G>A	c.(4480-4482)GGA>GAA	p.G1494E	ALK_uc010ymo.1_Missense_Mutation_p.G426E	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1494	Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GTTTCTGGATCCGTGGACCTT	0.527			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				32	129					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29416609	29416609	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29416609G>A	uc002rmy.2	-	29	5251	c.4344C>T	c.(4342-4344)TCC>TCT	p.S1448S	ALK_uc010ymo.1_Silent_p.S380S	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1448	Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CCTTGCCAGAGGAGGTGGTAG	0.612			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				44	108					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29420417	29420417	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29420417G>A	uc002rmy.2	-	27	4971	c.4064C>T	c.(4063-4065)CCT>CTT	p.P1355L	ALK_uc010ymo.1_Missense_Mutation_p.P287L	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1355	Protein kinase.|Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CACAGGCCCAGGGCAGTTCTT	0.438			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome		OREG0014526	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	82					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29432720	29432720	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29432720G>A	uc002rmy.2	-	25	4675	c.3768C>T	c.(3766-3768)CTC>CTT	p.L1256L	ALK_uc010ymo.1_Silent_p.L188L	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1256	Protein kinase.|Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GACAGGTCAAGAGGCAGTTTC	0.507			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				16	44					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29455196	29455197	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29455196_29455197CC>TT	uc002rmy.2	-	15	3512_3513	c.2605_2606GG>AA	c.(2605-2607)GGG>AAG	p.G869K		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	869	Gly-rich.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GCCGTTTAGCCCTAGAACCGAG	0.624			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				30	81					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29455288	29455288	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29455288C>T	uc002rmy.2	-	15	3421	c.2514G>A	c.(2512-2514)CTG>CTA	p.L838L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	838	Gly-rich.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CTGCAATGATCAGGGGCACCG	0.572			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				15	35					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29498068	29498068	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29498068C>T	uc002rmy.2	-	11	2845	c.1938G>A	c.(1936-1938)CAG>CAA	p.Q646Q		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	646	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GTGCTGTATTCTGCAGGATCT	0.488			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				20	64					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29754972	29754972	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29754972G>A	uc002rmy.2	-	4	1870	c.963C>T	c.(961-963)CTC>CTT	p.L321L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	321	MAM 1.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	TGTTGAGAAGGAGAAAGGAGC	0.537			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				13	36					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29917838	29917838	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:29917838G>A	uc002rmy.2	-	3	1737	c.830C>T	c.(829-831)TCC>TTC	p.S277F		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	277	MAM 1.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CAGTGGAGGGGAATACTCCAG	0.567			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				30	79					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30954233	30954233	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:30954233C>T	uc002rnn.2	-	20	2136	c.1960G>A	c.(1960-1962)GGA>AGA	p.G654R	CAPN13_uc002rnm.2_RNA	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	654	EF-hand 2.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AGGTAGAGTCCTTTTCCATCC	0.547													4	13					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30954258	30954258	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:30954258G>A	uc002rnn.2	-	20	2111	c.1935C>T	c.(1933-1935)TTC>TTT	p.F645F	CAPN13_uc002rnm.2_RNA	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	645	EF-hand 2.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AGAGGTTGCGGAAGGTCTCTA	0.567													8	10					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30966408	30966408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:30966408G>A	uc002rnn.2	-	12	1462	c.1286C>T	c.(1285-1287)TCG>TTG	p.S429L	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	429					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					GTTTCTGAACGAGGAAAAAAA	0.473													10	88					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30973981	30973981	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:30973981G>A	uc002rnn.2	-	11	1400	c.1224C>T	c.(1222-1224)TTC>TTT	p.F408F	CAPN13_uc002rnp.1_Silent_p.F408F	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	408					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					GAATCACTTGGAAATCGAGTG	0.473													9	17					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30976046	30976046	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:30976046G>A	uc002rnn.2	-	10	1136	c.960C>T	c.(958-960)TTC>TTT	p.F320F	CAPN13_uc002rnp.1_Silent_p.F320F	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	320	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					ATTTCTGTTGGAAATCTTGAC	0.448													30	97					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30998884	30998884	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:30998884C>T	uc002rnn.2	-	4	475	c.299G>A	c.(298-300)GGA>GAA	p.G100E	CAPN13_uc002rnp.1_Missense_Mutation_p.G100E	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	100	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AGTCAAGGATCCCAGTGCTGC	0.527													17	33					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	31010117	31010117	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31010117C>T	uc002rnn.2	-	2	251	c.75G>A	c.(73-75)CGG>CGA	p.R25R	CAPN13_uc002rnp.1_Silent_p.R25R	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	25					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					GGCAGTGATCCCGCAAGGTGG	0.522													9	21					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31133827	31133827	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31133827G>A	uc002rnr.2	-	15	2218	c.1599C>T	c.(1597-1599)ATC>ATT	p.I533I	GALNT14_uc002rnq.2_Silent_p.I513I|GALNT14_uc002rns.2_Silent_p.I538I|GALNT14_uc010ymr.1_Silent_p.I498I	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	533	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GGTTGACGACGATTTCCTTGC	0.557													27	67					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31133838	31133838	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31133838C>T	uc002rnr.2	-	15	2207	c.1588G>A	c.(1588-1590)GGC>AGC	p.G530S	GALNT14_uc002rnq.2_Missense_Mutation_p.G510S|GALNT14_uc002rns.2_Missense_Mutation_p.G535S|GALNT14_uc010ymr.1_Missense_Mutation_p.G495S	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	530	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					ATTTCCTTGCCGTTCTCGGTG	0.537													31	63					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31154973	31154973	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31154973G>A	uc002rnr.2	-	10	1638	c.1019C>T	c.(1018-1020)CCC>CTC	p.P340L	GALNT14_uc002rnq.2_Missense_Mutation_p.P320L|GALNT14_uc002rns.2_Missense_Mutation_p.P345L|GALNT14_uc010ymr.1_Missense_Mutation_p.P305L|GALNT14_uc010ezo.1_Missense_Mutation_p.P307L|GALNT14_uc010ezp.1_3'UTR	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	340	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GAAAACGTAGGGGTGCTTCTT	0.602													31	71					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31167799	31167799	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31167799C>T	uc002rnr.2	-	8	1371	c.752G>A	c.(751-753)TGG>TAG	p.W251*	GALNT14_uc002rnq.2_Nonsense_Mutation_p.W231*|GALNT14_uc002rns.2_Nonsense_Mutation_p.W256*|GALNT14_uc010ymr.1_Nonsense_Mutation_p.W216*|GALNT14_uc010ezo.1_Nonsense_Mutation_p.W218*|GALNT14_uc010ezp.1_Intron	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	251	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GTGGAGGCTCCAGTCAAACCC	0.577													7	72					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31215756	31215756	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31215756C>T	uc002rnr.2	-	2	866	c.247G>A	c.(247-249)GAG>AAG	p.E83K	GALNT14_uc002rnq.2_Missense_Mutation_p.E63K|GALNT14_uc002rns.2_Intron|GALNT14_uc010ymr.1_Missense_Mutation_p.E48K|GALNT14_uc010ezo.1_Missense_Mutation_p.E83K|GALNT14_uc010ezp.1_Missense_Mutation_p.E54K	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	83	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					CGCTCACTCTCCCGCTGGTTG	0.562													31	73					0	0	1	0	0
EHD3	30845	broad.mit.edu	37	2	31457512	31457512	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31457512G>A	uc002rnu.2	+	1	633	c.25G>A	c.(25-27)GAC>AAC	p.D9N	EHD3_uc010ymt.1_Missense_Mutation_p.D9N	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	9					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					GGGTACGGACGACCGCCGGAG	0.642													25	61					0	0	1	0	0
EHD3	30845	broad.mit.edu	37	2	31483684	31483684	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31483684T>A	uc002rnu.2	+	4	1419	c.811T>A	c.(811-813)TTT>ATT	p.F271I	EHD3_uc010ymt.1_Intron	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	271					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					CCGGAAGCTCTTTGAGGCTGA	0.592													28	107					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31565099	31565099	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31565099C>T	uc002rnv.1	-	32	3548	c.3469G>A	c.(3469-3471)GGG>AGG	p.G1157R		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1157					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CAAGCCACCCCATAGCTGAAG	0.443													37	97					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31572557	31572557	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31572557G>A	uc002rnv.1	-	26	3043	c.2964C>T	c.(2962-2964)TTC>TTT	p.F988F		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	988					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CTTACTTGTTGAACTTGTCAA	0.458													57	121					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31587038	31587038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31587038C>T	uc002rnv.1	-	24	2696	c.2617G>A	c.(2617-2619)GAT>AAT	p.D873N		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	873					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGAGAGAGATCCTGGGTGTTC	0.572													17	51					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31588337	31588337	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31588337G>A	uc002rnv.1	-	23	2609	c.2530C>T	c.(2530-2532)CTG>TTG	p.L844L		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	844					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TATCTGGCCAGGAAGGGATGT	0.577													33	100					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31590856	31590856	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31590856C>T	uc002rnv.1	-	20	2247	c.2168G>A	c.(2167-2169)GGG>GAG	p.G723E		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	723					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTCGGAAAACCCCTTCTTTAG	0.448													48	159					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31590878	31590878	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31590878C>T	uc002rnv.1	-	20	2225	c.2146G>A	c.(2146-2148)GAG>AAG	p.E716K		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	716					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TCCCCTTTCTCGATCTTCAGC	0.468													109	71					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31593296	31593296	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31593296G>A	uc002rnv.1	-	18	1984	c.1905C>T	c.(1903-1905)TTC>TTT	p.F635F		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	635					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CAGCGGAAATGAAACAAACAA	0.438													10	50					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31595112	31595112	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31595112C>T	uc002rnv.1	-	17	1917	c.1838G>A	c.(1837-1839)CGG>CAG	p.R613Q		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	613					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GGCGTGGGCCCGGGTGCTGGT	0.622													51	149					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31606007	31606007	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31606007C>T	uc002rnv.1	-	11	977	c.898G>A	c.(898-900)GGA>AGA	p.G300R		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	300	FAD-binding PCMH-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CAAGCAGCTCCAAAGGAGATA	0.398													17	51					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31624191	31624191	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31624191G>A	uc002rnv.1	-	4	280	c.201C>T	c.(199-201)CAC>CAT	p.H67H		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	67	2Fe-2S ferredoxin-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGGCAGAAAAGTGGCTAGAAC	0.507													5	46					0	0	1	0	0
SRD5A2	6716	broad.mit.edu	37	2	31805774	31805774	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:31805774C>T	uc002rnw.1	-	2	268	c.197G>A	c.(196-198)GGG>GAG	p.G66E		NM_000348	NP_000339	P31213	S5A2_HUMAN	3-oxo-5 alpha-steroid 4-dehydrogenase 2	66					androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity				0	Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	GGCGAGGATCCCCGCGGGCAC	0.667													5	17					0	0	1	0	0
NLRC4	58484	broad.mit.edu	37	2	32474867	32474867	+	Missense_Mutation	SNP	C	T	T	rs150636128		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:32474867C>T	uc002roi.2	-	4	2312	c.2066G>A	c.(2065-2067)AGC>AAC	p.S689N	NLRC4_uc002roj.1_Missense_Mutation_p.S689N|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	689					activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					CAGCCTGAGGCTTGTGGCAGA	0.468													34	92					0	0	1	0	0
NLRC4	58484	broad.mit.edu	37	2	32476018	32476018	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:32476018G>A	uc002roi.2	-	4	1161	c.915C>T	c.(913-915)GCC>GCT	p.A305A	NLRC4_uc002roj.1_Silent_p.A305A|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	305	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TGAGAGCCTGGGCGCTGTCTT	0.532													34	77					0	0	1	0	0
BIRC6	57448	broad.mit.edu	37	2	32689700	32689700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:32689700C>T	uc010ezu.2	+	25	5199	c.5065C>T	c.(5065-5067)CAT>TAT	p.H1689Y		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1689					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					ATTCTTCATTCATCCATCTGA	0.383													12	35					0	0	1	0	0
BIRC6	57448	broad.mit.edu	37	2	32712801	32712801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:32712801C>T	uc010ezu.2	+	41	8035	c.7901C>T	c.(7900-7902)TCA>TTA	p.S2634L		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2634					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					ATACAGTTATCATCTGTCCCA	0.368													44	88					0	0	1	0	0
BIRC6	57448	broad.mit.edu	37	2	32724803	32724803	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:32724803C>T	uc010ezu.2	+	46	8792	c.8658C>T	c.(8656-8658)TCC>TCT	p.S2886S		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2886					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CAGATAGCTCCGTGGGTGCTC	0.438													68	199					0	0	1	0	0
BIRC6	57448	broad.mit.edu	37	2	32750561	32750561	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:32750561C>T	uc010ezu.2	+	59	11920	c.11786C>T	c.(11785-11787)TCA>TTA	p.S3929L		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	3929					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CGTGCTGTGTCAGCTACACCA	0.428													28	57					0	0	1	0	0
TTC27	55622	broad.mit.edu	37	2	32891781	32891781	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:32891781C>T	uc002rom.2	+	7	1116	c.885C>T	c.(883-885)GTC>GTT	p.V295V	TTC27_uc010ymx.1_Silent_p.V245V	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	295							protein binding			central_nervous_system(1)	1						AAGGGGATGTCCTTTCAAATT	0.373													38	86					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33246090	33246090	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33246090C>T	uc002ros.2	+	3	680	c.680C>T	c.(679-681)TCG>TTG	p.S227L		NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	227					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CAGGACACCTCGTCACCAGTC	0.552													78	215					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33411949	33411949	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33411949G>A	uc002ros.2	+	6	1228	c.1228G>A	c.(1228-1230)GGT>AGT	p.G410S	LTBP1_uc002rot.2_Missense_Mutation_p.G84S|LTBP1_uc002rou.2_Missense_Mutation_p.G84S|LTBP1_uc002rov.2_Missense_Mutation_p.G84S|LTBP1_uc010ymz.1_Missense_Mutation_p.G84S|LTBP1_uc010yna.1_Missense_Mutation_p.G84S	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	410	EGF-like 2.				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				ATGTATGAATGGTGGCCAGTG	0.433													20	45					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33412082	33412082	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33412082G>A	uc002ros.2	+	6	1361	c.1361G>A	c.(1360-1362)GGG>GAG	p.G454E	LTBP1_uc002rot.2_Missense_Mutation_p.G128E|LTBP1_uc002rou.2_Missense_Mutation_p.G128E|LTBP1_uc002rov.2_Missense_Mutation_p.G128E|LTBP1_uc010ymz.1_Missense_Mutation_p.G128E|LTBP1_uc010yna.1_Missense_Mutation_p.G128E	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	454					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				AAGGCGTTGGGGACGCATGTC	0.507													15	52					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33412138	33412138	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33412138G>A	uc002ros.2	+	6	1417	c.1417G>A	c.(1417-1419)GGA>AGA	p.G473R	LTBP1_uc002rot.2_Missense_Mutation_p.G147R|LTBP1_uc002rou.2_Missense_Mutation_p.G147R|LTBP1_uc002rov.2_Missense_Mutation_p.G147R|LTBP1_uc010ymz.1_Missense_Mutation_p.G147R|LTBP1_uc010yna.1_Missense_Mutation_p.G147R	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	473					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TAGCCAGCAAGGAGTCAAAGG	0.527													15	55					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33505192	33505192	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33505192G>A	uc002ros.2	+	19	3082	c.3082G>A	c.(3082-3084)GAA>AAA	p.E1028K	LTBP1_uc002rot.2_Missense_Mutation_p.E702K|LTBP1_uc002rou.2_Missense_Mutation_p.E701K|LTBP1_uc002rov.2_Missense_Mutation_p.E648K|LTBP1_uc010ymz.1_Missense_Mutation_p.E701K|LTBP1_uc010yna.1_Missense_Mutation_p.E648K	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1027	EGF-like 7; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TCCCTGCACAGAAGGATTCCG	0.423													15	82					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33540299	33540299	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33540299G>A	uc002ros.2	+	24	3696	c.3696G>A	c.(3694-3696)CAG>CAA	p.Q1232Q	LTBP1_uc002rot.2_Silent_p.Q906Q|LTBP1_uc002rou.2_Silent_p.Q905Q|LTBP1_uc002rov.2_Silent_p.Q852Q|LTBP1_uc010ymz.1_Silent_p.Q905Q|LTBP1_uc010yna.1_Silent_p.Q852Q|LTBP1_uc010ynb.1_Silent_p.Q171Q	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1231	EGF-like 12; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TCTGCCAGCAGGGTTTCTCAA	0.428													43	62					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33585684	33585684	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33585684C>T	uc002ros.2	+	27	4024	c.4024C>T	c.(4024-4026)CAA>TAA	p.Q1342*	LTBP1_uc002rot.2_Nonsense_Mutation_p.Q1016*|LTBP1_uc002rou.2_Nonsense_Mutation_p.Q1015*|LTBP1_uc002rov.2_Nonsense_Mutation_p.Q962*|LTBP1_uc010ymz.1_Nonsense_Mutation_p.Q973*|LTBP1_uc010yna.1_Nonsense_Mutation_p.Q920*|LTBP1_uc010ynb.1_Nonsense_Mutation_p.Q239*	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1341					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				AGATGTAGATCAACCCAAAGA	0.403													26	78					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33585816	33585816	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33585816G>A	uc002ros.2	+	27	4156	c.4156G>A	c.(4156-4158)GAA>AAA	p.E1386K	LTBP1_uc002rot.2_Missense_Mutation_p.E1060K|LTBP1_uc002rou.2_Missense_Mutation_p.E1059K|LTBP1_uc002rov.2_Missense_Mutation_p.E1006K|LTBP1_uc010ymz.1_Missense_Mutation_p.E1017K|LTBP1_uc010yna.1_Missense_Mutation_p.E964K|LTBP1_uc010ynb.1_Missense_Mutation_p.E283K	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1385	TB 3.			EIFP->DL: Loss of binding to TGFB1.	negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				AGATAACTGCGAAATCTTCCC	0.498													5	74					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33588480	33588480	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33588480G>A	uc002ros.2	+	29	4297	c.4297G>A	c.(4297-4299)GGA>AGA	p.G1433R	LTBP1_uc002rot.2_Missense_Mutation_p.G1107R|LTBP1_uc002rou.2_Missense_Mutation_p.G1106R|LTBP1_uc002rov.2_Missense_Mutation_p.G1053R|LTBP1_uc010ymz.1_Missense_Mutation_p.G1064R|LTBP1_uc010yna.1_Missense_Mutation_p.G1011R|LTBP1_uc010ynb.1_Missense_Mutation_p.G330R	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1432	EGF-like 15; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CCTACTTTTTGGACAAGAAAT	0.383													22	77					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33590564	33590564	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33590564G>A	uc002ros.2	+	31	4708	c.4708G>A	c.(4708-4710)GAT>AAT	p.D1570N	LTBP1_uc002rot.2_Missense_Mutation_p.D1244N|LTBP1_uc002rou.2_Missense_Mutation_p.D1243N|LTBP1_uc002rov.2_Missense_Mutation_p.D1190N|LTBP1_uc010ymz.1_Missense_Mutation_p.D1201N|LTBP1_uc010yna.1_Missense_Mutation_p.D1148N|LTBP1_uc010ynb.1_Missense_Mutation_p.D467N	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1569	TB 4.				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CCCCCTGAAGGATTCAGGTGA	0.542													24	36					0	0	1	0	0
RASGRP3	25780	broad.mit.edu	37	2	33783919	33783919	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33783919G>A	uc002rox.2	+	18	2513	c.1886G>A	c.(1885-1887)GGG>GAG	p.G629E	RASGRP3_uc010ync.1_Missense_Mutation_p.G629E|RASGRP3_uc002roy.2_Missense_Mutation_p.G628E	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	629					MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					GGGGACTCGGGGTCCCACACC	0.557													20	73					0	0	1	0	0
FAM98A	25940	broad.mit.edu	37	2	33810711	33810711	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:33810711G>A	uc002rpa.1	-	7	848	c.774C>T	c.(772-774)TCC>TCT	p.S258S	FAM98A_uc010yne.1_Silent_p.S63S|FAM98A_uc010ynd.1_Silent_p.S89S|FAM98A_uc002roz.1_Silent_p.S96S	NM_015475	NP_056290	Q8NCA5	FA98A_HUMAN	hypothetical protein LOC25940	259										ovary(1)	1	all_hematologic(175;0.115)					TAGTTTTAGGGGATAAGACTG	0.398													35	102					0	0	1	0	0
CRIM1	51232	broad.mit.edu	37	2	36623931	36623931	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:36623931G>A	uc002rpd.2	+	2	544	c.505_splice	c.e2+1	p.E169_splice		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor						nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				AGAATTGAAGGTAAGCATTAA	0.373													22	96					0	0	1	0	0
FEZ2	9637	broad.mit.edu	37	2	36782889	36782889	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:36782889G>A	uc002rph.2	-	7	1029	c.982C>T	c.(982-984)CTT>TTT	p.L328F	FEZ2_uc002rpe.2_Missense_Mutation_p.L185F|FEZ2_uc002rpf.2_Missense_Mutation_p.L157F|FEZ2_uc002rpg.2_Missense_Mutation_p.L355F|FEZ2_uc002rpi.2_Missense_Mutation_p.L183F|FEZ2_uc002rpj.2_Silent_p.F302F	NM_005102	NP_005093	Q9UHY8	FEZ2_HUMAN	zygin 2 isoform 1	328					axon guidance|signal transduction		protein binding			ovary(1)	1		all_hematologic(82;0.21)				ATGGCACGAAGAACTGCAAAA	0.323													11	32					0	0	1	0	0
FEZ2	9637	broad.mit.edu	37	2	36810533	36810533	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:36810533G>A	uc002rph.2	-	3	502	c.455C>T	c.(454-456)TCC>TTC	p.S152F	FEZ2_uc002rpe.2_5'Flank|FEZ2_uc002rpf.2_5'UTR|FEZ2_uc002rpg.2_Missense_Mutation_p.S152F|FEZ2_uc002rpi.2_Missense_Mutation_p.S7F|FEZ2_uc002rpj.2_Missense_Mutation_p.S152F	NM_005102	NP_005093	Q9UHY8	FEZ2_HUMAN	zygin 2 isoform 1	152					axon guidance|signal transduction		protein binding			ovary(1)	1		all_hematologic(82;0.21)				ATTAACACAGGAGACGATGAT	0.443													29	77					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	36943516	36943516	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:36943516G>A	uc002rpl.2	+	2	224	c.3G>A	c.(1-3)ATG>ATA	p.M1I	VIT_uc002rpk.2_5'UTR|VIT_uc010ynf.1_5'UTR|VIT_uc002rpm.2_5'UTR|VIT_uc010ezv.2_5'UTR|VIT_uc010ezw.2_5'UTR	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	1						proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				TGATATTTATGAGGACTGTTG	0.383													20	65					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	37002154	37002154	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37002154G>A	uc002rpl.2	+	9	967	c.746G>A	c.(745-747)AGG>AAG	p.R249K	VIT_uc002rpm.2_Missense_Mutation_p.R242K|VIT_uc010ezv.2_Intron|VIT_uc010ezw.2_Missense_Mutation_p.R242K	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	249						proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				GGTATCCAAAGGCAAGATCCT	0.507													25	33					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	37036109	37036109	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37036109C>T	uc002rpl.2	+	15	2105	c.1884C>T	c.(1882-1884)GCC>GCT	p.A628A	VIT_uc002rpm.2_Silent_p.A606A|VIT_uc010ezv.2_Silent_p.A584A|VIT_uc010ezw.2_Silent_p.A585A	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	613	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				GGATCCCAGCCATGGCTGCCC	0.582													14	37					0	0	1	0	0
HEATR5B	54497	broad.mit.edu	37	2	37289169	37289169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37289169G>A	uc002rpp.1	-	11	1705	c.1609C>T	c.(1609-1611)CTT>TTT	p.L537F		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	537							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				GTTCGTAAAAGATCTTCAGCA	0.343													24	59					0	0	1	0	0
EIF2AK2	5610	broad.mit.edu	37	2	37365703	37365703	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37365703G>A	uc010ynh.1	-	7	1099	c.542C>T	c.(541-543)TCT>TTT	p.S181F	EIF2AK2_uc010fab.1_Missense_Mutation_p.S181F|EIF2AK2_uc010yng.1_Missense_Mutation_p.S181F|EIF2AK2_uc010fac.2_Missense_Mutation_p.S181F|EIF2AK2_uc010fad.2_Missense_Mutation_p.S181F	NM_002759	NP_002750	P19525	E2AK2_HUMAN	eukaryotic translation initiation factor 2-alpha	181					evasion by virus of host immune response|modulation by virus of host cellular process|negative regulation of osteoblast proliferation|protein autophosphorylation|response to virus|viral infectious cycle	cytosol	ATP binding|double-stranded RNA binding|eukaryotic translation initiation factor 2alpha kinase activity|protein binding|protein phosphatase type 2A regulator activity			ovary(2)|lung(2)|pancreas(1)	5		all_hematologic(82;0.248)				AGTAGCAAAAGAACCAGAGGA	0.368													22	74					0	0	1	0	0
EIF2AK2	5610	broad.mit.edu	37	2	37366820	37366820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37366820G>A	uc010ynh.1	-	6	1027	c.470C>T	c.(469-471)GCC>GTC	p.A157V	EIF2AK2_uc010fab.1_Missense_Mutation_p.A157V|EIF2AK2_uc010yng.1_Missense_Mutation_p.A157V|EIF2AK2_uc010fac.2_Missense_Mutation_p.A157V|EIF2AK2_uc010fad.2_Missense_Mutation_p.A157V	NM_002759	NP_002750	P19525	E2AK2_HUMAN	eukaryotic translation initiation factor 2-alpha	157	DRBM 2.				evasion by virus of host immune response|modulation by virus of host cellular process|negative regulation of osteoblast proliferation|protein autophosphorylation|response to virus|viral infectious cycle	cytosol	ATP binding|double-stranded RNA binding|eukaryotic translation initiation factor 2alpha kinase activity|protein binding|protein phosphatase type 2A regulator activity			ovary(2)|lung(2)|pancreas(1)	5		all_hematologic(82;0.248)				AAGTTTAGCGGCCAATTGTTT	0.333													38	127					0	0	1	0	0
SULT6B1	391365	broad.mit.edu	37	2	37398589	37398589	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37398589G>A	uc002rpu.2	-	6	676	c.655C>T	c.(655-657)CTT>TTT	p.L219F	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	257						cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				TTGCGGAAAAGGAATGGGCCG	0.353													41	115					0	0	1	0	0
SULT6B1	391365	broad.mit.edu	37	2	37406712	37406712	+	Nonsense_Mutation	SNP	G	A	A	rs147099571		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37406712G>A	uc002rpu.2	-	4	325	c.304C>T	c.(304-306)CGA>TGA	p.R102*	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	140	PAPS (By similarity).					cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				TTAGGGTTTCGAAATATCACC	0.358													49	87					0	0	1	0	0
SULT6B1	391365	broad.mit.edu	37	2	37414539	37414539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37414539C>T	uc002rpu.2	-	2	178	c.157G>A	c.(157-159)GAA>AAA	p.E53K	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	91						cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				ACTGGGAATTCTGGATATTTA	0.323													7	62					0	0	1	0	0
SULT6B1	391365	broad.mit.edu	37	2	37415610	37415610	+	Silent	SNP	G	A	A	rs140600686	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37415610G>A	uc002rpu.2	-	1	81	c.60C>T	c.(58-60)ATC>ATT	p.I20I	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	58						cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				ATGCTAGCACGATGTCATCAT	0.463													21	110					0	0	1	0	0
CDC42EP3	10602	broad.mit.edu	37	2	37873403	37873403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:37873403G>A	uc002rqi.1	-	2	1321	c.328C>T	c.(328-330)CCG>TCG	p.P110S		NM_006449	NP_006440	Q9UKI2	BORG2_HUMAN	Cdc42 effector protein 3	110					regulation of cell shape|signal transduction	actin cytoskeleton|cytoplasm|endomembrane system|membrane	cytoskeletal regulatory protein binding				0		all_hematologic(82;0.172)				CCAATGGTCGGGAGGGAGATG	0.547													18	151					0	0	1	0	0
ATL2	64225	broad.mit.edu	37	2	38525591	38525591	+	Missense_Mutation	SNP	G	A	A	rs116493165	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:38525591G>A	uc002rqq.2	-	12	1357	c.1327C>T	c.(1327-1329)CGT>TGT	p.R443C	ATL2_uc010ynm.1_Missense_Mutation_p.R425C|ATL2_uc010ynn.1_Missense_Mutation_p.R425C|ATL2_uc010yno.1_Missense_Mutation_p.R272C|ATL2_uc002rqs.2_Missense_Mutation_p.R443C|ATL2_uc002rqr.2_Missense_Mutation_p.R272C	NM_001135673	NP_001129145	Q8NHH9	ATLA2_HUMAN	atlastin GTPase 2 isoform 2	443	Cytoplasmic.				endoplasmic reticulum organization|Golgi organization|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	GTP binding|GTPase activity|identical protein binding			ovary(1)|kidney(1)|skin(1)	3						TCCTGATAACGACGGCAGAAC	0.418													17	217					0	0	1	0	0
DHX57	90957	broad.mit.edu	37	2	39050237	39050237	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:39050237G>T	uc002rrf.2	-	17	3288	c.3189C>A	c.(3187-3189)CCC>CCA	p.P1063P	DHX57_uc002rrd.3_Silent_p.P447P|DHX57_uc002rre.2_Silent_p.P496P	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	1063							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				TCACATCCACGGGCAGAGAGG	0.463													24	76					1.10923e-09	1.11285e-09	1	1	0
DHX57	90957	broad.mit.edu	37	2	39085814	39085814	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:39085814G>A	uc002rrf.2	-	6	1675	c.1576C>T	c.(1576-1578)CGA>TGA	p.R526*	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Nonsense_Mutation_p.R526*	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	526							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				TGTTTCATTCGGAACTGCTTG	0.413													86	198					0	0	1	0	0
SOS1	6654	broad.mit.edu	37	2	39281897	39281897	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:39281897G>A	uc002rrk.3	-	5	619	c.578C>T	c.(577-579)CCT>CTT	p.P193L	SOS1_uc010ynr.1_RNA|SOS1_uc002rrl.2_5'Flank	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	193					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				TGAGGTGGAAGGCTCTTCGTC	0.279									Noonan_syndrome				44	137					0	0	1	0	0
CDKL4	344387	broad.mit.edu	37	2	39406354	39406354	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:39406354C>T	uc002rrm.2	-	8	901	c.901G>A	c.(901-903)GAA>AAA	p.E301K	CDKL4_uc010fal.1_Missense_Mutation_p.E301K	NM_001009565	NP_001009565	Q5MAI5	CDKL4_HUMAN	cyclin-dependent kinase-like 4	301						cytoplasm	ATP binding|cyclin-dependent protein kinase activity			ovary(1)	1		all_hematologic(82;0.248)				TTTCTTCCTTCATTACGTGCT	0.378													36	141					0	0	1	0	0
MAP4K3	8491	broad.mit.edu	37	2	39515267	39515267	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:39515267G>A	uc002rro.2	-	20	1560	c.1469C>T	c.(1468-1470)GCC>GTC	p.A490V	MAP4K3_uc002rrp.2_Missense_Mutation_p.A469V|MAP4K3_uc010yns.1_Missense_Mutation_p.A43V	NM_003618	NP_003609	Q8IVH8	M4K3_HUMAN	mitogen-activated protein kinase kinase kinase	490					JNK cascade		ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(3)|lung(3)|stomach(1)|pancreas(1)	8		all_hematologic(82;0.211)				ATTACCTAAGGCAACAGGTTT	0.438													58	138					0	0	1	0	0
TMEM178	130733	broad.mit.edu	37	2	39931233	39931233	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:39931233G>A	uc002rrt.2	+	2	438	c.413G>A	c.(412-414)CGA>CAA	p.R138Q	TMEM178_uc010fam.1_Missense_Mutation_p.R138Q	NM_152390	NP_689603	Q8NBL3	TM178_HUMAN	transmembrane protein 178 precursor	138	Extracellular (Potential).					integral to membrane					0		all_hematologic(82;0.248)				ATTGCGCAGCGATGCACGGCC	0.448													11	42					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40655984	40655984	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:40655984G>A	uc002rrx.2	-	1	1461	c.1437C>T	c.(1435-1437)ATC>ATT	p.I479I	SLC8A1_uc002rry.2_Silent_p.I479I|SLC8A1_uc002rrz.2_Silent_p.I479I|SLC8A1_uc002rsa.2_Silent_p.I479I|SLC8A1_uc002rsd.3_Silent_p.I479I|SLC8A1_uc002rsb.1_Silent_p.I479I|SLC8A1_uc010fan.1_Silent_p.I479I|SLC8A1_uc002rsc.1_Silent_p.I479I	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	479	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CATCATCTATGATACCCACTC	0.423													32	59					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656113	40656113	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:40656113C>T	uc002rrx.2	-	1	1332	c.1308G>A	c.(1306-1308)TTG>TTA	p.L436L	SLC8A1_uc002rry.2_Silent_p.L436L|SLC8A1_uc002rrz.2_Silent_p.L436L|SLC8A1_uc002rsa.2_Silent_p.L436L|SLC8A1_uc002rsd.3_Silent_p.L436L|SLC8A1_uc002rsb.1_Silent_p.L436L|SLC8A1_uc010fan.1_Silent_p.L436L|SLC8A1_uc002rsc.1_Silent_p.L436L	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	436	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CAGTGTTAGTCAAATCACCAC	0.443													26	79					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656476	40656476	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:40656476C>T	uc002rrx.2	-	1	969	c.945G>A	c.(943-945)AGG>AGA	p.R315R	SLC8A1_uc002rry.2_Silent_p.R315R|SLC8A1_uc002rrz.2_Silent_p.R315R|SLC8A1_uc002rsa.2_Silent_p.R315R|SLC8A1_uc002rsd.3_Silent_p.R315R|SLC8A1_uc002rsb.1_Silent_p.R315R|SLC8A1_uc010fan.1_Silent_p.R315R|SLC8A1_uc002rsc.1_Silent_p.R315R	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	315	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CATCTTGGTCCCTCTCATCCA	0.408													72	159					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656881	40656881	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:40656881G>A	uc002rrx.2	-	1	564	c.540C>T	c.(538-540)TTC>TTT	p.F180F	SLC8A1_uc002rry.2_Silent_p.F180F|SLC8A1_uc002rrz.2_Silent_p.F180F|SLC8A1_uc002rsa.2_Silent_p.F180F|SLC8A1_uc002rsd.3_Silent_p.F180F|SLC8A1_uc002rsb.1_Silent_p.F180F|SLC8A1_uc010fan.1_Silent_p.F180F|SLC8A1_uc002rsc.1_Silent_p.F180F	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	180	Alpha-1.|Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CAATAATGATGAACATATTGA	0.463													16	50					0	0	1	0	0
KCNG3	170850	broad.mit.edu	37	2	42720426	42720426	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:42720426G>A	uc002rsn.2	-	1	812	c.216C>T	c.(214-216)TTC>TTT	p.F72F	MTA3_uc002rso.1_5'Flank|KCNG3_uc002rsm.2_Silent_p.F72F	NM_133329	NP_579875	Q8TAE7	KCNG3_HUMAN	potassium voltage-gated channel, subfamily G,	72	Cytoplasmic (Potential).					endoplasmic reticulum|voltage-gated potassium channel complex	protein binding			central_nervous_system(1)	1						AGAGCAGGATGAAGCCGAAGG	0.662													13	25					0	0	1	0	0
ZFP36L2	678	broad.mit.edu	37	2	43452023	43452023	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43452023G>A	uc002rsv.3	-	2	1211	c.920C>T	c.(919-921)TCC>TTC	p.S307F	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	307					cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				GGAGGCCgaggaacaggagga	0.607													5	6					0	0	1	0	0
THADA	63892	broad.mit.edu	37	2	43625187	43625187	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43625187G>A	uc002rsw.3	-	29	4502	c.4150C>T	c.(4150-4152)CGA>TGA	p.R1384*	THADA_uc010far.2_Nonsense_Mutation_p.R579*|THADA_uc002rsx.3_Nonsense_Mutation_p.R1384*|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Nonsense_Mutation_p.R1093*|THADA_uc010fat.1_Nonsense_Mutation_p.R531*	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1384							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				AACAGAGTTCGAATGGTATTA	0.493													50	73					0	0	1	0	0
THADA	63892	broad.mit.edu	37	2	43625191	43625192	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43625191_43625192GG>AA	uc002rsw.3	-	29	4497_4498	c.4145_4146CC>TT	c.(4144-4146)ACC>ATT	p.T1382I	THADA_uc010far.2_Missense_Mutation_p.T577I|THADA_uc002rsx.3_Missense_Mutation_p.T1382I|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.T1091I|THADA_uc010fat.1_Missense_Mutation_p.T529I	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1382							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GAGTTCGAATGGTATTAGGAAT	0.48													50	72					0	0	1	0	0
THADA	63892	broad.mit.edu	37	2	43778950	43778950	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43778950G>A	uc002rsw.3	-	19	3277	c.2925C>T	c.(2923-2925)CTC>CTT	p.L975L	THADA_uc010far.2_Silent_p.L244L|THADA_uc002rsx.3_Silent_p.L975L|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Silent_p.L684L|THADA_uc010fat.1_Silent_p.L122L|THADA_uc002rta.2_Silent_p.L685L	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	975							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				CCATTGGGATGAGGCCTTCAG	0.468													12	57					0	0	1	0	0
THADA	63892	broad.mit.edu	37	2	43804268	43804268	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43804268G>A	uc002rsw.3	-	10	1282	c.930C>T	c.(928-930)CTC>CTT	p.L310L	THADA_uc002rsx.3_Silent_p.L310L|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_5'Flank|THADA_uc002rsz.2_Silent_p.L20L|THADA_uc002rta.2_Silent_p.L20L|THADA_uc002rtb.1_Silent_p.L310L|THADA_uc002rtc.3_Silent_p.L310L|THADA_uc002rtd.2_Silent_p.L310L	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	310							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TCCCCTGACAGAGGAATAAGA	0.542											OREG0014580	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	21					0	0	1	0	0
THADA	63892	broad.mit.edu	37	2	43808945	43808945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43808945G>A	uc002rsw.3	-	8	1008	c.656C>T	c.(655-657)TCC>TTC	p.S219F	THADA_uc002rsx.3_Missense_Mutation_p.S219F|THADA_uc002rsy.3_RNA|THADA_uc002rsz.2_5'UTR|THADA_uc002rta.2_5'UTR|THADA_uc002rtb.1_Missense_Mutation_p.S219F|THADA_uc002rtc.3_Missense_Mutation_p.S219F|THADA_uc002rtd.2_Missense_Mutation_p.S219F	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	219							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GGGAGAATCGGAAGTCTTCCA	0.333													18	73					0	0	1	0	0
LOC728819	728819	broad.mit.edu	37	2	43902632	43902632	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43902632C>T	uc010fav.1	-	1	830	c.830G>A	c.(829-831)GGA>GAA	p.G277E	PLEKHH2_uc002rte.3_Intron|PLEKHH2_uc002rtf.3_Intron|PLEKHH2_uc010yny.1_Intron	NM_001101330	NP_001094800			C1GALT1-specific chaperone 1-like												0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GGGGGTCAGTCCATTGAAAGT	0.433													13	51					0	0	1	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43926790	43926790	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43926790G>A	uc010yny.1	+	8	776	c.693G>A	c.(691-693)ATG>ATA	p.M231I	PLEKHH2_uc002rte.3_Missense_Mutation_p.M231I|PLEKHH2_uc002rtf.3_Missense_Mutation_p.M230I	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	231						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TTCTAGAAATGGAAATTCCAG	0.368													23	54					0	0	1	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43927322	43927322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43927322C>T	uc010yny.1	+	8	1308	c.1225C>T	c.(1225-1227)CCT>TCT	p.P409S	PLEKHH2_uc002rte.3_Missense_Mutation_p.P409S|PLEKHH2_uc002rtf.3_Missense_Mutation_p.P408S	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	409						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CACCCCAAGCCCTATTTTGAC	0.423													35	94					0	0	1	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43947855	43947855	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43947855G>A	uc010yny.1	+	16	2591	c.2508G>A	c.(2506-2508)AAG>AAA	p.K836K	PLEKHH2_uc002rtf.3_Silent_p.K835K	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	836	PH 2.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TAATAGGAAAGACATTATATT	0.323													59	152					0	0	1	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43971011	43971011	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43971011T>C	uc010yny.1	+	23	3521	c.3438T>C	c.(3436-3438)TTT>TTC	p.F1146F		NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	1146	FERM.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TGGAAGAATTTTTGAATACTT	0.388													19	79					0	0	1	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43984301	43984301	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:43984301G>A	uc010yny.1	+	26	3922	c.3839G>A	c.(3838-3840)GGG>GAG	p.G1280E		NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	1280	FERM.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				ACTCCAGCAGGGCATGTTACC	0.343													36	89					0	0	1	0	0
ABCG5	64240	broad.mit.edu	37	2	44050043	44050043	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:44050043C>T	uc002rtn.2	-	10	1496	c.1356G>A	c.(1354-1356)GAG>GAA	p.E452E	ABCG5_uc002rtm.2_Silent_p.E57E|ABCG5_uc002rto.2_Silent_p.E281E|ABCG5_uc002rtp.2_Silent_p.E57E	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	452	ABC transmembrane type-2.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CGTCCTGACTCTCCTGGTCGC	0.572													11	24					0	0	1	0	0
ABCG5	64240	broad.mit.edu	37	2	44052128	44052128	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:44052128G>A	uc002rtn.2	-	7	944	c.804C>T	c.(802-804)TTC>TTT	p.F268F	ABCG5_uc002rtm.2_Intron|ABCG5_uc002rto.2_Intron|ABCG5_uc002rtp.2_Intron	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	268	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TCAGCTCTCCGAAGCTCAGGA	0.458													13	34					0	0	1	0	0
ABCG8	64241	broad.mit.edu	37	2	44079588	44079588	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:44079588G>A	uc002rtq.2	+	5	747	c.657G>A	c.(655-657)AGG>AGA	p.R219R	ABCG8_uc010yoa.1_Silent_p.R219R	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	219	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GTGAGCGCAGGAGAGTCAGCA	0.677													22	34					0	0	1	0	0
ABCG8	64241	broad.mit.edu	37	2	44102413	44102413	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:44102413C>T	uc002rtq.2	+	11	1707	c.1617C>T	c.(1615-1617)GTC>GTT	p.V539V	ABCG8_uc010yoa.1_Silent_p.V538V	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	539	Helical; Name=4; (Potential).|ABC transmembrane type-2.				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GGCTGGTGGTCTTCTGTTGCA	0.612													13	95					0	0	1	0	0
PPM1B	5495	broad.mit.edu	37	2	44429000	44429000	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:44429000C>T	uc002rtt.2	+	2	1090	c.662C>T	c.(661-663)TCT>TTT	p.S221F	PPM1B_uc002rts.2_Missense_Mutation_p.S221F|PPM1B_uc002rtu.2_Missense_Mutation_p.S221F|PPM1B_uc002rtv.2_Intron|PPM1B_uc002rtw.2_Missense_Mutation_p.S221F|PPM1B_uc002rtx.2_Missense_Mutation_p.S221F	NM_002706	NP_002697	O75688	PPM1B_HUMAN	protein phosphatase 1B isoform 1	221					protein dephosphorylation	protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity			kidney(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CAACTTGTTTCTCCAGAGCCT	0.423													24	58					0	0	1	0	0
SIX3	6496	broad.mit.edu	37	2	45169955	45169955	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:45169955G>A	uc002run.1	+	1	919	c.712G>A	c.(712-714)GAA>AAA	p.E238K		NM_005413	NP_005404	O95343	SIX3_HUMAN	SIX homeobox 3	238	Homeobox.				visual perception	nucleus					0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CAAGAAACGCGAACTGGCGCA	0.637													14	69					0	0	1	0	0
SIX3	6496	broad.mit.edu	37	2	45170038	45170038	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:45170038G>A	uc002run.1	+	1	1002	c.795G>A	c.(793-795)GCG>GCA	p.A265A		NM_005413	NP_005404	O95343	SIX3_HUMAN	SIX homeobox 3	265	Homeobox.|Poly-Ala.				visual perception	nucleus					0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GCGCCGCGGCGGCCAAGAACA	0.682													12	16					0	0	1	0	0
SIX2	10736	broad.mit.edu	37	2	45233467	45233467	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:45233467G>A	uc002ruo.2	-	2	1011	c.718C>T	c.(718-720)CTG>TTG	p.L240L	SIX2_uc002rup.2_Silent_p.L242L	NM_016932	NP_058628	Q9NPC8	SIX2_HUMAN	SIX homeobox 2	240						nucleus	sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AGGGACGGCAGCCCAGGGGGC	0.701													27	79					0	0	1	0	0
SRBD1	55133	broad.mit.edu	37	2	45829220	45829220	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:45829220G>A	uc002rus.2	-	3	159	c.83C>T	c.(82-84)TCA>TTA	p.S28L		NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	28					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			AGAGGCAGATGATCTAGAAGT	0.398													36	92					0	0	1	0	0
PRKCE	5581	broad.mit.edu	37	2	46237647	46237648	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:46237647_46237648CC>TT	uc002rut.2	+	10	1625_1626	c.1428_1429CC>TT	c.(1426-1431)TTCCAG>TTTTAG	p.Q477*		NM_005400	NP_005391	Q02156	KPCE_HUMAN	protein kinase C, epsilon	477	Protein kinase.				activation of phospholipase C activity|induction of apoptosis|intracellular signal transduction|nerve growth factor receptor signaling pathway|platelet activation	cytosol|endoplasmic reticulum|plasma membrane	ATP binding|enzyme activator activity|metal ion binding|signal transducer activity	p.F476L(1)		lung(4)|ovary(3)|kidney(1)|breast(1)|large_intestine(1)	10		all_hematologic(82;0.155)|Acute lymphoblastic leukemia(82;0.209)	LUSC - Lung squamous cell carcinoma(58;0.171)			ACTGCTGCTTCCAGACCAAGGT	0.47													10	67					0	0	1	0	0
EPAS1	2034	broad.mit.edu	37	2	46607818	46607818	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:46607818C>T	uc002ruv.2	+	12	2495	c.2007C>T	c.(2005-2007)CCC>CCT	p.P669P	EPAS1_uc002ruw.2_Silent_p.P135P	NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	669					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			CGTTGGGGCCCCCTGTCTCTC	0.587													45	118					0	0	1	0	0
EPAS1	2034	broad.mit.edu	37	2	46609673	46609673	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:46609673C>T	uc002ruv.2	+	15	2885	c.2397C>T	c.(2395-2397)TTC>TTT	p.F799F	EPAS1_uc002ruw.2_Silent_p.F265F	NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	799					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			AGAGCAGGTTCCCCCCACAGT	0.637													24	84					0	0	1	0	0
SOCS5	9655	broad.mit.edu	37	2	46986807	46986807	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:46986807C>T	uc002rvf.2	+	2	1302	c.1138C>T	c.(1138-1140)CCC>TCC	p.P380S	SOCS5_uc010yoe.1_Missense_Mutation_p.P349S|SOCS5_uc002rvg.2_Missense_Mutation_p.P380S	NM_014011	NP_054730	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	380					cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					ovary(1)|lung(1)|central_nervous_system(1)	3		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			TACAGGGAATCCCTGTTACTG	0.498													17	50					0	0	1	0	0
TTC7A	57217	broad.mit.edu	37	2	47222299	47222299	+	Silent	SNP	C	T	T	rs151317740	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:47222299C>T	uc002rvo.2	+	8	1394	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I	TTC7A_uc002rvm.2_Silent_p.I308I|TTC7A_uc002rvn.1_Silent_p.I223I|TTC7A_uc010fbb.2_Silent_p.I342I|TTC7A_uc010fbc.2_5'UTR|TTC7A_uc002rvp.2_Silent_p.I223I|TTC7A_uc002rvq.2_Silent_p.I82I|TTC7A_uc002rvr.2_5'UTR	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	342							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			AGGACAACATCGAGGAAGCCC	0.597													15	35					0	0	1	0	0
TTC7A	57217	broad.mit.edu	37	2	47300925	47300925	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:47300925G>A	uc002rvo.2	+	20	2808	c.2440G>A	c.(2440-2442)GAG>AAG	p.E814K	TTC7A_uc002rvm.2_Missense_Mutation_p.E780K|TTC7A_uc010fbb.2_Missense_Mutation_p.E838K|TTC7A_uc010fbc.2_Missense_Mutation_p.E460K|TTC7A_uc002rvp.2_Missense_Mutation_p.E695K|C2orf61_uc010fbd.2_Intron|TTC7A_uc002rvq.2_Missense_Mutation_p.E554K|TTC7A_uc002rvr.2_Missense_Mutation_p.E263K	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	814	TPR 9.						binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			TACGTGCCACGAGGCGTGGCA	0.662													30	50					0	0	1	0	0
FOXN2	3344	broad.mit.edu	37	2	48602074	48602074	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:48602074C>T	uc002rwh.1	+	7	1103	c.788C>T	c.(787-789)CCT>CTT	p.P263L		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	263					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			AAGCCTCTTCCTCTTAAAACA	0.378													13	63					0	0	1	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808114	48808114	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:48808114C>T	uc010yol.1	+	1	389	c.342C>T	c.(340-342)CTC>CTT	p.L114L	STON1_uc002rwo.3_Silent_p.L114L|STON1_uc010fbm.2_Silent_p.L114L|STON1-GTF2A1L_uc002rwp.1_Silent_p.L114L|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Silent_p.L114L	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	114					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ACAGCCCACTCGCAATATCAG	0.473													39	68					0	0	1	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808137	48808137	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:48808137C>T	uc010yol.1	+	1	412	c.365C>T	c.(364-366)TCC>TTC	p.S122F	STON1_uc002rwo.3_Missense_Mutation_p.S122F|STON1_uc010fbm.2_Missense_Mutation_p.S122F|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.S122F|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.S122F	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	122					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			GGAGAATCTTCCTTACTGCCT	0.473													32	53					0	0	1	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48896915	48896915	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:48896915G>A	uc010yol.1	+	6	3051	c.3004G>A	c.(3004-3006)GAA>AAA	p.E1002K	STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.E1049K|GTF2A1L_uc002rws.1_Missense_Mutation_p.E345K|GTF2A1L_uc010yom.1_Missense_Mutation_p.E311K|GTF2A1L_uc002rwt.2_Missense_Mutation_p.E345K	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	1002					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TGATATTGGTGAAATAATTCA	0.338													58	137					0	0	1	0	0
LHCGR	3973	broad.mit.edu	37	2	48915876	48915876	+	Missense_Mutation	SNP	C	T	T	rs121912529		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:48915876C>T	uc002rwu.3	-	11	1130	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	354	Extracellular (Potential).		E -> K (in LHR; Leydig cell hypoplasia type 1).		male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	ATAATATCTTCACAGGGATTA	0.443									Familial_Male-Limited_Precocious_Puberty				25	135					0	0	1	0	0
LHCGR	3973	broad.mit.edu	37	2	48936095	48936095	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:48936095C>T	uc002rwu.3	-	8	742	c.672G>A	c.(670-672)CCG>CCA	p.P224P	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	224	Extracellular (Potential).|LRR 6.				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	ACAAGGTTTTCGGCCCTGTGG	0.547									Familial_Male-Limited_Precocious_Puberty				48	121					0	0	1	0	0
LHCGR	3973	broad.mit.edu	37	2	48936161	48936161	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:48936161C>T	uc002rwu.3	-	8	676	c.606G>A	c.(604-606)CTG>CTA	p.L202L	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	202	Extracellular (Potential).|LRR 5.				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	CCTTTAGCTCCCTGTGGGGAA	0.488									Familial_Male-Limited_Precocious_Puberty				28	86					0	0	1	0	0
FSHR	2492	broad.mit.edu	37	2	49210260	49210260	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:49210260G>A	uc002rww.2	-	7	644	c.570C>T	c.(568-570)TTC>TTT	p.F190F	FSHR_uc002rwx.2_Silent_p.F190F|FSHR_uc010fbn.2_Silent_p.F164F|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	190	Extracellular (Potential).|LRR 6.				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GGGTTCCATTGAATGCACAGT	0.373									Gonadal_Dysgenesis_46_XX				14	57					0	0	1	0	0
FSHR	2492	broad.mit.edu	37	2	49244651	49244651	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:49244651C>T	uc002rww.2	-	4	425	c.351G>A	c.(349-351)CAG>CAA	p.Q117Q	FSHR_uc002rwx.2_Silent_p.Q117Q|FSHR_uc010fbn.2_Silent_p.Q117Q|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	117	Extracellular (Potential).|LRR 3.				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TGGGAAGGTTCTGGAAGGCCT	0.393									Gonadal_Dysgenesis_46_XX				19	66					0	0	1	0	0
FSHR	2492	broad.mit.edu	37	2	49295430	49295430	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:49295430C>T	uc002rww.2	-	2	227	c.153_splice	c.e2-1	p.L51_splice	FSHR_uc002rwx.2_Splice_Site_p.L51_splice|FSHR_uc010fbn.2_Splice_Site_p.L51_splice|FSHR_uc010fbo.1_Splice_Site	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1						female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GACAAACCTCCTGCAAAGAGA	0.348									Gonadal_Dysgenesis_46_XX				11	104					0	0	1	0	0
FSHR	2492	broad.mit.edu	37	2	49381496	49381496	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:49381496G>A	uc002rww.2	-	1	135	c.61C>T	c.(61-63)CGG>TGG	p.R21W	FSHR_uc002rwx.2_Missense_Mutation_p.R21W|FSHR_uc010fbn.2_Missense_Mutation_p.R21W|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	21	LRRNT.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TGACAGATCCGATGATGACAT	0.493									Gonadal_Dysgenesis_46_XX				18	36					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	50464087	50464087	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:50464087C>T	uc010fbp.2	-	2	1088	c.281G>A	c.(280-282)AGC>AAC	p.S94N	NRXN1_uc002rxb.3_Missense_Mutation_p.S801N|NRXN1_uc010fbq.2_Missense_Mutation_p.S1169N|NRXN1_uc002rxe.3_Missense_Mutation_p.S1129N|NRXN1_uc002rxc.1_RNA	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	94	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ACCACCTTTGCTAAAGATATA	0.413													35	76					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	50724778	50724778	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:50724778G>A	uc010fbq.2	-	14	4169	c.2692C>T	c.(2692-2694)CTT>TTT	p.L898F	NRXN1_uc002rxb.3_Missense_Mutation_p.L530F|NRXN1_uc002rxe.3_Missense_Mutation_p.L858F|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ACAGAAGAAAGATACCGTCGT	0.408													22	58					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	50847230	50847230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:50847230C>T	uc010fbq.2	-	8	2847	c.1370G>A	c.(1369-1371)GGA>GAA	p.G457E	NRXN1_uc002rxb.3_Missense_Mutation_p.G89E|NRXN1_uc002rxe.3_Missense_Mutation_p.G417E|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GGGACTGCCTCCAACATAGAA	0.463													11	24					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51254667	51254667	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:51254667C>T	uc010fbq.2	-	2	2222	c.745G>A	c.(745-747)GGC>AGC	p.G249S	NRXN1_uc002rxe.3_Missense_Mutation_p.G249S|NRXN1_uc002rxd.1_Missense_Mutation_p.G249S	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CCGCGGAAGCCGGTTCGCGAG	0.756													9	28					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51254708	51254708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:51254708G>A	uc010fbq.2	-	2	2181	c.704C>T	c.(703-705)TCC>TTC	p.S235F	NRXN1_uc002rxe.3_Missense_Mutation_p.S235F|NRXN1_uc002rxd.1_Missense_Mutation_p.S235F	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GTCCACCACGGAGCACACACC	0.726													15	19					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51254947	51254947	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:51254947G>A	uc010fbq.2	-	2	1942	c.465C>T	c.(463-465)GTC>GTT	p.V155V	NRXN1_uc002rxe.3_Silent_p.V155V|NRXN1_uc002rxd.1_Silent_p.V155V	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GCAGCCCCCCGACGAAAAGGC	0.662													10	24					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51255362	51255362	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:51255362G>A	uc010fbq.2	-	2	1527	c.50C>T	c.(49-51)TCG>TTG	p.S17L	NRXN1_uc002rxe.3_Missense_Mutation_p.S17L|NRXN1_uc002rxd.1_Missense_Mutation_p.S17L	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GAGCAGCAGCGAGAGGCACAG	0.716													3	8					0	0	1	0	0
PSME4	23198	broad.mit.edu	37	2	54153116	54153116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:54153116G>A	uc002rxp.2	-	13	1694	c.1638C>T	c.(1636-1638)TTC>TTT	p.F546F	PSME4_uc010yop.1_Silent_p.F432F|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_5'UTR|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	546					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			ACTGTAAGACGAAATCCTCAA	0.363													18	61					0	0	1	0	0
PSME4	23198	broad.mit.edu	37	2	54159124	54159124	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:54159124A>G	uc002rxp.2	-	10	1220	c.1164T>C	c.(1162-1164)CTT>CTC	p.L388L	PSME4_uc010yop.1_Silent_p.L274L|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_5'UTR|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	388					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			CTTGATCAGTAAGCTTGTGGC	0.443													30	54					0	0	1	0	0
PSME4	23198	broad.mit.edu	37	2	54159206	54159206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:54159206G>A	uc002rxp.2	-	10	1138	c.1082C>T	c.(1081-1083)CCA>CTA	p.P361L	PSME4_uc010yop.1_Missense_Mutation_p.P247L|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_5'UTR|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	361					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			AACACTGTTTGGCAACCGCTG	0.423													16	173					0	0	1	0	0
SPTBN1	6711	broad.mit.edu	37	2	54849620	54849621	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:54849620_54849621CC>TT	uc002rxu.2	+	9	1309_1310	c.1060_1061CC>TT	c.(1060-1062)CCC>TTC	p.P354F	SPTBN1_uc002rxv.1_Missense_Mutation_p.P354F|SPTBN1_uc002rxx.2_Missense_Mutation_p.P341F	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	354	Spectrin 1.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			GGAGAAACCACCCAAGTAAGAT	0.411													8	110					0	0	1	0	0
SPTBN1	6711	broad.mit.edu	37	2	54856251	54856251	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:54856251C>T	uc002rxu.2	+	14	2229	c.1980C>T	c.(1978-1980)ATC>ATT	p.I660I	SPTBN1_uc002rxv.1_Silent_p.I660I|SPTBN1_uc002rxx.2_Silent_p.I647I	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	660	Spectrin 4.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			AGGAGAAGATCCTGTCCTCGG	0.627													37	87					0	0	1	0	0
SPTBN1	6711	broad.mit.edu	37	2	54856572	54856572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:54856572C>T	uc002rxu.2	+	14	2550	c.2301C>T	c.(2299-2301)GTC>GTT	p.V767V	SPTBN1_uc002rxv.1_Silent_p.V767V|SPTBN1_uc002rxx.2_Silent_p.V754V	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	767	Spectrin 5.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			TCAAGATTGTCTCCAGCAGCG	0.562													22	67					0	0	1	0	0
CCDC88A	55704	broad.mit.edu	37	2	55522891	55522891	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:55522891G>A	uc002ryv.2	-	31	6232	c.5390C>T	c.(5389-5391)CCT>CTT	p.P1797L	CCDC88A_uc010yoz.1_Missense_Mutation_p.P1770L|CCDC88A_uc010ypa.1_Intron|CCDC88A_uc002ryt.2_Missense_Mutation_p.P88L|CCDC88A_uc010fbw.2_Missense_Mutation_p.P299L|CCDC88A_uc002ryu.2_Missense_Mutation_p.P1052L|CCDC88A_uc002rys.2_Missense_Mutation_p.P755L|CCDC88A_uc002ryw.2_Missense_Mutation_p.P1081L|CCDC88A_uc010fby.1_Missense_Mutation_p.P649L	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	1798					activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						AGTTGCATAAGGGTTACTATC	0.413													31	79					0	0	1	0	0
CCDC88A	55704	broad.mit.edu	37	2	55522958	55522958	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:55522958C>T	uc002ryv.2	-	31	6165	c.5323G>A	c.(5323-5325)GGC>AGC	p.G1775S	CCDC88A_uc010yoz.1_Missense_Mutation_p.G1748S|CCDC88A_uc010ypa.1_Intron|CCDC88A_uc002ryt.2_Missense_Mutation_p.G66S|CCDC88A_uc010fbw.2_Missense_Mutation_p.G277S|CCDC88A_uc002ryu.2_Missense_Mutation_p.G1030S|CCDC88A_uc002rys.2_Missense_Mutation_p.G733S|CCDC88A_uc002ryw.2_Missense_Mutation_p.G1059S|CCDC88A_uc010fby.1_Missense_Mutation_p.G627S	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	1776					activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						CCTTGAGTGCCTGGTGTAGGT	0.403													23	65					0	0	1	0	0
PNPT1	87178	broad.mit.edu	37	2	55894164	55894164	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:55894164G>C	uc002rzf.2	-	13	1191	c.1138C>G	c.(1138-1140)CTT>GTT	p.L380V	PNPT1_uc002rzg.2_RNA	NM_033109	NP_149100	Q8TCS8	PNPT1_HUMAN	polyribonucleotide nucleotidyltransferase 1	380					mRNA catabolic process|RNA processing	plasma membrane	3'-5'-exoribonuclease activity|polyribonucleotide nucleotidyltransferase activity|RNA binding				0			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			GATCCATGAAGGGTTTTAAAC	0.308													16	39					0	0	1	0	0
EFEMP1	2202	broad.mit.edu	37	2	56098199	56098199	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:56098199G>A	uc002rzh.2	-	9	1390	c.1060C>T	c.(1060-1062)CAT>TAT	p.H354Y	EFEMP1_uc002rzi.2_Missense_Mutation_p.H354Y|EFEMP1_uc002rzj.2_Missense_Mutation_p.H354Y|EFEMP1_uc010ypc.1_Missense_Mutation_p.H216Y	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	354	Mediates interaction with TIMP3.|EGF-like 6; calcium-binding (Potential).				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			AAGCCGCCATGATAATTCCAA	0.378													21	65					0	0	1	0	0
EFEMP1	2202	broad.mit.edu	37	2	56108789	56108789	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:56108789G>A	uc002rzh.2	-	5	928	c.598C>T	c.(598-600)CAG>TAG	p.Q200*	EFEMP1_uc002rzi.2_Nonsense_Mutation_p.Q200*|EFEMP1_uc002rzj.2_Nonsense_Mutation_p.Q200*|EFEMP1_uc010ypc.1_Nonsense_Mutation_p.Q142*	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	200	EGF-like 2; calcium-binding (Potential).				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			GGAGGGCACTGACATGCAAAG	0.517													21	83					0	0	1	0	0
EFEMP1	2202	broad.mit.edu	37	2	56144898	56144898	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:56144898C>T	uc002rzh.2	-	4	749	c.419G>A	c.(418-420)CGG>CAG	p.R140Q	EFEMP1_uc002rzi.2_Missense_Mutation_p.R140Q|EFEMP1_uc002rzj.2_Missense_Mutation_p.R140Q|EFEMP1_uc010ypc.1_Missense_Mutation_p.R82Q	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	140					negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TGGGTTCCGCCGGATGACAAA	0.582													14	99					0	0	1	0	0
CCDC85A	114800	broad.mit.edu	37	2	56420022	56420022	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:56420022G>A	uc002rzn.2	+	2	1189	c.687G>A	c.(685-687)GCG>GCA	p.A229A		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	229	His-rich.									breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			AGCACCACGCGAGCAGTGGCA	0.682													20	45					0	0	1	0	0
CCDC85A	114800	broad.mit.edu	37	2	56420206	56420206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:56420206G>A	uc002rzn.2	+	2	1373	c.871G>A	c.(871-873)GAA>AAA	p.E291K		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	291	His-rich.									breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			GGGCAGCCCCGAACAGCAAAG	0.627													46	114					0	0	1	0	0
VRK2	7444	broad.mit.edu	37	2	58359011	58359011	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:58359011C>T	uc002rzo.2	+	12	1490	c.745C>T	c.(745-747)CCC>TCC	p.P249S	VRK2_uc010fcb.2_Missense_Mutation_p.P249S|VRK2_uc002rzs.2_Missense_Mutation_p.P249S|VRK2_uc002rzr.2_Missense_Mutation_p.P249S|VRK2_uc010fcc.2_Missense_Mutation_p.P131S|VRK2_uc002rzv.2_Missense_Mutation_p.P249S|VRK2_uc010fcd.2_Missense_Mutation_p.P226S|VRK2_uc002rzp.2_Missense_Mutation_p.P249S|VRK2_uc010ypg.1_Missense_Mutation_p.P249S|VRK2_uc002rzq.2_Missense_Mutation_p.P249S|VRK2_uc002rzu.2_Missense_Mutation_p.P249S|VRK2_uc002rzt.2_Missense_Mutation_p.P131S|VRK2_uc010yph.1_Missense_Mutation_p.P131S	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	249	Protein kinase.					integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						TGGGAAACTTCCCTGGGAACA	0.473													38	84					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60688164	60688164	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:60688164G>A	uc002sae.1	-	4	2111	c.1883C>T	c.(1882-1884)TCG>TTG	p.S628L	BCL11A_uc002sab.2_Missense_Mutation_p.S628L|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.S297L|BCL11A_uc010ypj.1_Missense_Mutation_p.S594L|BCL11A_uc002sad.1_Missense_Mutation_p.S476L|BCL11A_uc002saf.1_Missense_Mutation_p.S594L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	628					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GGGGCTCAGCGAGCTGGGGCT	0.662			T	IGH@	B-CLL								18	35					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60688288	60688288	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:60688288C>T	uc002sae.1	-	4	1987	c.1759G>A	c.(1759-1761)GAA>AAA	p.E587K	BCL11A_uc002sab.2_Missense_Mutation_p.E587K|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.E256K|BCL11A_uc010ypj.1_Missense_Mutation_p.E553K|BCL11A_uc002sad.1_Missense_Mutation_p.E435K|BCL11A_uc002saf.1_Missense_Mutation_p.E553K	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	587					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			ACCGAGTCTTCGTCGCAAGTG	0.672			T	IGH@	B-CLL								15	26					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60688457	60688457	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:60688457C>T	uc002sae.1	-	4	1818	c.1590G>A	c.(1588-1590)CGG>CGA	p.R530R	BCL11A_uc002sab.2_Silent_p.R530R|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Silent_p.R199R|BCL11A_uc010ypj.1_Silent_p.R496R|BCL11A_uc002sad.1_Silent_p.R378R|BCL11A_uc002saf.1_Silent_p.R496R	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	530					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CGACCGCGCCCCGCGAGCTGT	0.627			T	IGH@	B-CLL								6	12					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60689058	60689058	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:60689058G>A	uc002sae.1	-	4	1217	c.989C>T	c.(988-990)CCG>CTG	p.P330L	BCL11A_uc002sab.2_Missense_Mutation_p.P330L|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Missense_Mutation_p.P296L|BCL11A_uc002sad.1_Missense_Mutation_p.P178L|BCL11A_uc002saf.1_Missense_Mutation_p.P296L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	330	Pro-rich.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TGGGGACAGCGGTGGGCTAGA	0.612			T	IGH@	B-CLL								57	138					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60695935	60695935	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:60695935G>A	uc002sae.1	-	3	647	c.419C>T	c.(418-420)CCT>CTT	p.P140L	BCL11A_uc002sab.2_Missense_Mutation_p.P140L|BCL11A_uc002sac.2_Missense_Mutation_p.P140L|BCL11A_uc010ypi.1_5'UTR|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_5'UTR|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	140	Required for nuclear body formation and for SUMO1 recruitment (By similarity).				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TGCAGAACGAGGGGAGGAGAG	0.473			T	IGH@	B-CLL								6	64					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60773266	60773266	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:60773266G>A	uc002sae.1	-	2	453	c.225C>T	c.(223-225)CTC>CTT	p.L75L	BCL11A_uc002sab.2_Silent_p.L75L|BCL11A_uc002sac.2_Silent_p.L75L|BCL11A_uc010ypi.1_5'UTR|BCL11A_uc010ypj.1_Silent_p.L75L|BCL11A_uc002saf.1_Silent_p.L75L|BCL11A_uc010fcg.2_Silent_p.L75L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	75	Required for nuclear body formation and for SUMO1 recruitment (By similarity).				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TTTCTAAGCAGAGGCTGCCAT	0.498			T	IGH@	B-CLL								11	88					0	0	1	0	0
PAPOLG	64895	broad.mit.edu	37	2	60995608	60995608	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:60995608C>T	uc002sai.2	+	4	481	c.250C>T	c.(250-252)CTC>TTC	p.L84F	PAPOLG_uc002saj.2_5'UTR|PAPOLG_uc002sak.2_5'UTR	NM_022894	NP_075045	Q9BWT3	PAPOG_HUMAN	poly(A) polymerase gamma	84					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(2;0.0797)		LUSC - Lung squamous cell carcinoma(5;1.19e-07)|Lung(5;2.86e-06)|Epithelial(17;0.0768)			ATTTTAGAACCTCCCACCTTC	0.303													10	109					0	0	1	0	0
PUS10	150962	broad.mit.edu	37	2	61233692	61233692	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:61233692C>T	uc010fci.2	-	4	528	c.468G>A	c.(466-468)GAG>GAA	p.E156E	PUS10_uc002sao.2_Silent_p.E156E|PUS10_uc010ypk.1_5'UTR	NM_144709	NP_653310	Q3MIT2	PUS10_HUMAN	pseudouridylate synthase 10	156					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(2)|large_intestine(1)|kidney(1)	4			LUSC - Lung squamous cell carcinoma(5;1.56e-06)|Lung(5;2.48e-05)|Epithelial(17;0.113)			ATGACCTTACCTCTCTTACAG	0.373													5	70					0	0	1	0	0
PEX13	5194	broad.mit.edu	37	2	61275754	61275754	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:61275754C>T	uc002sau.3	+	4	1144	c.1061C>T	c.(1060-1062)TCT>TTT	p.S354F		NM_002618	NP_002609	Q92968	PEX13_HUMAN	peroxisomal biogenesis factor 13	354	Cytoplasmic (Potential).				cerebral cortex cell migration|fatty acid alpha-oxidation|locomotory behavior|microtubule-based peroxisome localization|neuron migration|protein import into peroxisome matrix, docking|suckling behavior	integral to peroxisomal membrane|membrane fraction	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(5;2.05e-06)|Lung(5;3.13e-05)|Epithelial(17;0.114)			CAGCAACAATCTTTTACCAAC	0.383													27	99					0	0	1	0	0
USP34	9736	broad.mit.edu	37	2	61508254	61508254	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:61508254G>A	uc002sbe.2	-	38	5144	c.5122C>T	c.(5122-5124)CCT>TCT	p.P1708S	USP34_uc002sbf.2_5'Flank	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1708					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TGAGCATCAGGAAGAAATTTC	0.388													8	28					0	0	1	0	0
USP34	9736	broad.mit.edu	37	2	61510285	61510285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:61510285G>A	uc002sbe.2	-	37	5015	c.4993C>T	c.(4993-4995)CCT>TCT	p.P1665S	USP34_uc002sbf.2_5'Flank	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1665					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			CTTACCTCAGGAATAAGGAGA	0.343													25	69					0	0	1	0	0
FAM161A	84140	broad.mit.edu	37	2	62066599	62066599	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:62066599G>A	uc010ypo.1	-	3	1642	c.1540C>T	c.(1540-1542)CCC>TCC	p.P514S	FAM161A_uc002sbm.3_Missense_Mutation_p.P514S|FAM161A_uc002sbn.3_Missense_Mutation_p.P324S|FAM161A_uc010fcm.1_RNA|FAM161A_uc010fcn.1_Missense_Mutation_p.P405S	NM_032180	NP_115556	Q3B820	F161A_HUMAN	hypothetical protein LOC84140	514					response to stimulus|visual perception	centrosome				large_intestine(2)|ovary(1)	3						GTGGGCACGGGAGGGTTGCAG	0.478													28	77					0	0	1	0	0
COMMD1	150684	broad.mit.edu	37	2	62132963	62132963	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:62132963C>T	uc002sbp.2	+	1	161	c.150C>T	c.(148-150)CCC>CCT	p.P50P		NM_152516	NP_689729	Q8N668	COMD1_HUMAN	MURR1	50					copper ion homeostasis|negative regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|regulation of proteasomal ubiquitin-dependent protein catabolic process	cell junction|Cul2-RING ubiquitin ligase complex|cytoplasm|nucleolus	copper ion binding|protein homodimerization activity			ovary(1)	1	Lung NSC(7;0.035)|all_lung(7;0.0691)		LUSC - Lung squamous cell carcinoma(7;4.73e-07)|Epithelial(17;0.0216)|all cancers(80;0.0934)			AGTTCCGCCCCTTTCTGGCAA	0.597													12	48					0	0	1	0	0
B3GNT2	10678	broad.mit.edu	37	2	62449618	62449618	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:62449618C>T	uc002sbs.2	+	2	501	c.263C>T	c.(262-264)TCC>TTC	p.S88F		NM_006577	NP_006568	Q9NY97	B3GN2_HUMAN	UDP-GlcNAc:betaGal	88	Lumenal (Potential).					Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1	Lung NSC(7;0.031)|all_lung(7;0.0634)		LUSC - Lung squamous cell carcinoma(7;3.55e-06)|Epithelial(17;0.0963)			GGCAGGCTCTCCAATATAAGC	0.547													163	404					0	0	1	0	0
EHBP1	23301	broad.mit.edu	37	2	63085637	63085637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:63085637C>T	uc002sby.2	+	8	1213	c.731C>T	c.(730-732)TCC>TTC	p.S244F	EHBP1_uc010fcp.2_Intron|EHBP1_uc002sbx.2_Intron|EHBP1_uc002sbz.2_Intron|EHBP1_uc002scb.2_Intron	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	244						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			TCAGCCAGTTCCTCTGAAGGT	0.408									Hereditary_Prostate_Cancer				12	56					0	0	1	0	0
OTX1	5013	broad.mit.edu	37	2	63282749	63282749	+	Silent	SNP	C	T	T	rs75832508		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:63282749C>T	uc002scd.2	+	5	611	c.363C>T	c.(361-363)TCC>TCT	p.S121S	OTX1_uc010ypt.1_Silent_p.S55S	NM_014562	NP_055377	P32242	OTX1_HUMAN	orthodenticle homeobox 1	121						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(2)	2	Lung NSC(7;0.121)|all_lung(7;0.211)					GCTCGGGCTCCGAAAGCAGTG	0.672													9	79					0	0	1	0	0
C2orf86	51057	broad.mit.edu	37	2	63631777	63631777	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:63631777G>A	uc002sch.2	-	10	1287	c.841C>T	c.(841-843)CGC>TGC	p.R281C	C2orf86_uc002sce.2_RNA|C2orf86_uc002scf.2_Missense_Mutation_p.R122C|C2orf86_uc010ypu.1_RNA|C2orf86_uc002scg.2_Missense_Mutation_p.R89C|C2orf86_uc002sci.1_Missense_Mutation_p.R257C|C2orf86_uc010fcr.1_Missense_Mutation_p.R171C	NM_015910	NP_056994	O95876	FRITZ_HUMAN	hypothetical protein LOC51057 isoform 2	281					cilium morphogenesis|regulation of embryonic cell shape|regulation of protein localization|septin cytoskeleton organization	cilium axoneme|cytoplasm|cytoskeleton|plasma membrane					0						CATTCTGTGCGGACAGAACTC	0.433													43	83					0	0	1	0	0
LOC388955	388955	broad.mit.edu	37	2	63849452	63849452	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:63849452C>T	uc002sck.1	-	1	708	c.514G>A	c.(514-516)GAG>AAG	p.E172K		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						GAAGGGGCCTCGCCTTGCAGC	0.517													12	39					0	0	1	0	0
LOC388955	388955	broad.mit.edu	37	2	63849634	63849634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:63849634C>T	uc002sck.1	-	1	526	c.332G>A	c.(331-333)CGA>CAA	p.R111Q		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						GTAAACACATCGTTCCTCCAC	0.537													13	35					0	0	1	0	0
VPS54	51542	broad.mit.edu	37	2	64139739	64139739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:64139739G>A	uc002scq.2	-	19	2642	c.2479C>T	c.(2479-2481)CAT>TAT	p.H827Y	VPS54_uc002scp.2_Missense_Mutation_p.H815Y|VPS54_uc002scn.2_5'UTR|VPS54_uc002sco.2_Missense_Mutation_p.H312Y|VPS54_uc010fct.2_Missense_Mutation_p.H674Y	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	827					protein transport|retrograde transport, endosome to Golgi						0						GCTTCAAAATGAGCCCGGATC	0.358													9	101					0	0	1	0	0
SERTAD2	9792	broad.mit.edu	37	2	64863228	64863228	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:64863228G>A	uc002sde.1	-	2	1075	c.778C>T	c.(778-780)CCC>TCC	p.P260S		NM_014755	NP_055570	Q14140	SRTD2_HUMAN	SERTA domain containing 2	260					negative regulation of cell growth|transcription, DNA-dependent	cytoplasm|nucleus					0						GAAGTGCAGGGGTCAAAATCA	0.512													22	53					0	0	1	0	0
ACTR2	10097	broad.mit.edu	37	2	65482733	65482733	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:65482733C>T	uc002sdq.2	+	6	855	c.640C>T	c.(640-642)CGC>TGC	p.R214C	ACTR2_uc010yqf.1_Missense_Mutation_p.R159C|ACTR2_uc002sdp.2_Missense_Mutation_p.R219C|ACTR2_uc010yqg.1_Missense_Mutation_p.R162C	NM_005722	NP_005713	P61160	ARP2_HUMAN	actin-related protein 2 isoform b	214	ATP (By similarity).				cellular component movement	Arp2/3 protein complex|cell projection|cytoplasm	actin binding|ATP binding				0						TGAAACGGTTCGCATGATTAA	0.373													46	102					0	0	1	0	0
SPRED2	200734	broad.mit.edu	37	2	65541092	65541092	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:65541092G>A	uc002sdr.3	-	6	1335	c.800C>T	c.(799-801)CCC>CTC	p.P267L	SPRED2_uc010fcw.2_Missense_Mutation_p.P264L	NM_181784	NP_861449	Q7Z698	SPRE2_HUMAN	sprouty-related protein with EVH-1 domain 2	267					inactivation of MAPK activity|multicellular organismal development	transport vesicle membrane	stem cell factor receptor binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GTCCACGTAGGGGTAGTTGTA	0.682													34	84					0	0	1	0	0
MEIS1	4211	broad.mit.edu	37	2	66795861	66795861	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:66795861C>T	uc002sdu.2	+	11	1544	c.1087C>T	c.(1087-1089)CAG>TAG	p.Q363*	MEIS1_uc002sdt.2_Nonsense_Mutation_p.Q363*|MEIS1_uc002sdv.2_Nonsense_Mutation_p.Q361*|MEIS1_uc010yqh.1_RNA|MEIS1_uc010yqi.1_Nonsense_Mutation_p.Q298*|MEIS1_uc002sdw.1_Nonsense_Mutation_p.Q219*	NM_002398	NP_002389	O00470	MEIS1_HUMAN	Meis homeobox 1	363	Required for transcriptional activation (By similarity).						sequence-specific DNA binding transcription factor activity				0						AATGGACGGTCAGCAACATAT	0.408													52	199					0	0	1	0	0
WDR92	116143	broad.mit.edu	37	2	68358422	68358422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:68358422G>A	uc002see.1	-	8	1103	c.1022C>T	c.(1021-1023)TCA>TTA	p.S341L	WDR92_uc002sed.1_RNA	NM_138458	NP_612467	Q96MX6	WDR92_HUMAN	monad	341	WD 6.				apoptosis|histone lysine methylation		methylated histone residue binding				0						TTGGTCAAATGAACTACAGAC	0.373													44	154					0	0	1	0	0
PLEK	5341	broad.mit.edu	37	2	68607929	68607929	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:68607929C>T	uc002sen.3	+	3	435	c.273C>T	c.(271-273)GCC>GCT	p.A91A	PLEK_uc010fde.2_Silent_p.A91A	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	91	PH 1.				actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		AGAGAGATGCCTGGGTTCGGG	0.468													68	143					0	0	1	0	0
PROKR1	10887	broad.mit.edu	37	2	68873164	68873164	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:68873164G>A	uc010yqj.1	+	1	211	c.211G>A	c.(211-213)GGC>AGC	p.G71S	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	71	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						GGCCCTGGTGGGCATCATGCT	0.517													19	187					0	0	1	0	0
PROKR1	10887	broad.mit.edu	37	2	68882034	68882034	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:68882034C>T	uc010yqj.1	+	2	508	c.508C>T	c.(508-510)CTG>TTG	p.L170L	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	170	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						TGTCCATCCGCTGAGACCACG	0.488													46	96					0	0	1	0	0
PROKR1	10887	broad.mit.edu	37	2	68882677	68882677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:68882677C>T	uc010yqj.1	+	2	1151	c.1151C>T	c.(1150-1152)ACC>ATC	p.T384I	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	384	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						ATGCCTGCCACCGAAGAGGTG	0.483													14	44					0	0	1	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69046395	69046395	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69046395G>T	uc002seu.2	+	9	1505	c.1141G>T	c.(1141-1143)GGC>TGC	p.G381C	ARHGAP25_uc010fdg.2_Missense_Mutation_p.G382C|ARHGAP25_uc010yql.1_Missense_Mutation_p.G342C|ARHGAP25_uc002sev.2_Missense_Mutation_p.G375C|ARHGAP25_uc002sew.2_Missense_Mutation_p.G374C|ARHGAP25_uc002sex.2_Missense_Mutation_p.G375C|ARHGAP25_uc002sey.2_Missense_Mutation_p.G108C	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	381					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						AAGCTCTGTAGGCTGGGATGC	0.522													28	120					8.16721e-17	8.20646e-17	1	1	0
ARHGAP25	9938	broad.mit.edu	37	2	69046420	69046420	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69046420G>A	uc002seu.2	+	9	1530	c.1166G>A	c.(1165-1167)CGA>CAA	p.R389Q	ARHGAP25_uc010fdg.2_Missense_Mutation_p.R390Q|ARHGAP25_uc010yql.1_Missense_Mutation_p.R350Q|ARHGAP25_uc002sev.2_Missense_Mutation_p.R383Q|ARHGAP25_uc002sew.2_Missense_Mutation_p.R382Q|ARHGAP25_uc002sex.2_Missense_Mutation_p.R383Q|ARHGAP25_uc002sey.2_Missense_Mutation_p.R116Q	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	389					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						GAAGACCTCCGAATTTCTAGG	0.532													38	81					0	0	1	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69049851	69049851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69049851C>T	uc002seu.2	+	10	1941	c.1577C>T	c.(1576-1578)TCC>TTC	p.S526F	ARHGAP25_uc010fdg.2_Missense_Mutation_p.S527F|ARHGAP25_uc010yql.1_Missense_Mutation_p.S487F|ARHGAP25_uc002sew.2_Missense_Mutation_p.S519F|ARHGAP25_uc002sex.2_Missense_Mutation_p.S520F|ARHGAP25_uc002sey.2_Missense_Mutation_p.S253F	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	526					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						GCCTGTGACTCCAAGGGAGAT	0.527													61	110					0	0	1	0	0
BMP10	27302	broad.mit.edu	37	2	69093153	69093153	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69093153C>T	uc002sez.1	-	2	1044	c.885G>A	c.(883-885)GGG>GGA	p.G295G		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	295					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						AAGCCTCTTCCCCAGGTCCAC	0.493													18	65					0	0	1	0	0
GKN1	56287	broad.mit.edu	37	2	69204639	69204640	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69204639_69204640GG>AA	uc002sfc.2	+	2	130_131	c.67_68GG>AA	c.(67-69)GGA>AAA	p.G23K		NM_019617	NP_062563	Q9NS71	GKN1_HUMAN	18 kDa antrum mucosa protein precursor	23					digestion|positive regulation of cell division	extracellular region				breast(1)	1						TGTCTTTGCTGGACTTCTTGGA	0.371													36	111					0	0	1	0	0
ANTXR1	84168	broad.mit.edu	37	2	69409628	69409628	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69409628C>T	uc002sfg.2	+	16	1545	c.1189C>T	c.(1189-1191)CGT>TGT	p.R397C		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	397	Cytoplasmic (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						ATTTTAGGTTCGTTGGGGAGA	0.413									Familial_Infantile_Hemangioma				14	37					0	0	1	0	0
ANTXR1	84168	broad.mit.edu	37	2	69409764	69409764	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69409764C>T	uc002sfg.2	+	16	1681	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	442	Cytoplasmic (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity	p.S442S(1)		ovary(2)|skin(2)	4						CGGCCTTCTTCCCCCCGGAAG	0.423									Familial_Infantile_Hemangioma				27	83					0	0	1	0	0
ANTXR1	84168	broad.mit.edu	37	2	69472590	69472591	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69472590_69472591CC>TT	uc002sfg.2	+	18	2024_2025	c.1668_1669CC>TT	c.(1666-1671)TCCCGC>TCTTGC	p.R557C		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	557	Cytoplasmic (Potential).|Pro-rich.				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						ctcctccctcccgccctcctcc	0.208									Familial_Infantile_Hemangioma				7	43					0	0	1	0	0
GFPT1	2673	broad.mit.edu	37	2	69556865	69556865	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69556865G>A	uc002sfh.2	-	15	1673	c.1494C>T	c.(1492-1494)TCC>TCT	p.S498S		NM_002056	NP_002047	Q06210	GFPT1_HUMAN	glucosamine-fructose-6-phosphate	516	SIS 1.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			skin(1)	1						TTTCTTGCATGGAGATCCGAT	0.418													6	90					0	0	1	0	0
AAK1	22848	broad.mit.edu	37	2	69736497	69736497	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69736497G>A	uc002sfp.2	-	14	2377	c.1872C>T	c.(1870-1872)TCC>TCT	p.S624S	AAK1_uc010fdk.2_Silent_p.S624S|AAK1_uc010yqm.1_Silent_p.S625S	NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	624						coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						GGGTTTTGGGGGATGAGGGTG	0.567													6	61					0	0	1	0	0
AAK1	22848	broad.mit.edu	37	2	69752175	69752175	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:69752175G>A	uc002sfp.2	-	10	1550	c.1045C>T	c.(1045-1047)CCA>TCA	p.P349S	AAK1_uc010fdk.2_Missense_Mutation_p.P349S|AAK1_uc010yqm.1_Missense_Mutation_p.P349S	NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	349						coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						CTGGCCTTTGGCTGGGTCTTT	0.428													18	82					0	0	1	0	0
GMCL1	64395	broad.mit.edu	37	2	70096880	70096880	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70096880C>T	uc002sfu.2	+	12	1455	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F		NM_178439	NP_848526	Q96IK5	GMCL1_HUMAN	germ cell-less	416					cell differentiation|multicellular organismal development|spermatogenesis	nuclear matrix				ovary(3)	3						GTTTTAACTTCGGCTTCGACC	0.358													22	111					0	0	1	0	0
C2orf42	54980	broad.mit.edu	37	2	70387902	70387902	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70387902G>A	uc002sgh.2	-	9	1699	c.1371C>T	c.(1369-1371)ACC>ACT	p.T457T		NM_017880	NP_060350	Q9NWW7	CB042_HUMAN	hypothetical protein LOC54980	457											0						TAAAGCTACGGGTGATTTCCA	0.403													17	45					0	0	1	0	0
C2orf42	54980	broad.mit.edu	37	2	70402845	70402845	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70402845G>A	uc002sgh.2	-	5	1327	c.999C>T	c.(997-999)GGC>GGT	p.G333G		NM_017880	NP_060350	Q9NWW7	CB042_HUMAN	hypothetical protein LOC54980	333											0						GCTTTTTCAGGCCACTTTTCC	0.433													96	254					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70890626	70890626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70890626C>T	uc002sgz.2	-	16	2577	c.2112G>A	c.(2110-2112)AAG>AAA	p.K704K	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_3'UTR|ADD2_uc002sha.2_Silent_p.K398K|ADD2_uc002sgx.2_3'UTR	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	704	Interaction with calmodulin (Potential).				actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						TCTTTTTCTTCTTTGAGGGAG	0.527													119	233					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70890760	70890760	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70890760C>T	uc002sgz.2	-	16	2443	c.1978G>A	c.(1978-1980)GAA>AAA	p.E660K	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_3'UTR|ADD2_uc002sha.2_Missense_Mutation_p.E354K|ADD2_uc002sgx.2_3'UTR	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	660					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CTGAGGATTTCCTCTGCCGTC	0.577													56	99					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70904966	70904966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70904966G>A	uc002sgz.2	-	12	1892	c.1427C>T	c.(1426-1428)CCG>CTG	p.P476L	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.P476L|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Missense_Mutation_p.P476L|ADD2_uc010fdt.1_Missense_Mutation_p.P476L|ADD2_uc002shc.1_Missense_Mutation_p.P476L|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Missense_Mutation_p.P492L	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	476					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						GATGCGAATCGGCATGCCACT	0.532													8	81					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70917960	70917961	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70917960_70917961GG>AA	uc002sgz.2	-	8	1271_1272	c.806_807CC>TT	c.(805-807)GCC>GTT	p.A269V	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.A269V|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Missense_Mutation_p.A269V|ADD2_uc010fdt.1_Missense_Mutation_p.A269V|ADD2_uc002shc.1_Missense_Mutation_p.A269V|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Missense_Mutation_p.A285V	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	269					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						TGATCCGATCGGCTTCCTGCTC	0.535													24	81					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70919657	70919657	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70919657C>T	uc002sgz.2	-	7	1048	c.583G>A	c.(583-585)GTG>ATG	p.V195M	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.V195M|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Missense_Mutation_p.V195M|ADD2_uc010fdt.1_Missense_Mutation_p.V195M|ADD2_uc002shc.1_Missense_Mutation_p.V195M|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Missense_Mutation_p.V211M	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	195					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CCCTTCTCCACCACCTCTCCC	0.617													14	33					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70922888	70922888	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70922888C>T	uc002sgz.2	-	6	985	c.520G>A	c.(520-522)GGA>AGA	p.G174R	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.G174R|ADD2_uc002sha.2_Missense_Mutation_p.G174R|ADD2_uc002sgx.2_Missense_Mutation_p.G174R|ADD2_uc010fdt.1_Missense_Mutation_p.G174R|ADD2_uc002shc.1_Missense_Mutation_p.G174R|ADD2_uc002shd.1_Missense_Mutation_p.G174R|ADD2_uc010fdu.1_Missense_Mutation_p.G190R	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	174					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CAAGAAACTCCCTTAGGGCTG	0.517													8	31					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70931458	70931458	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70931458G>A	uc002sgz.2	-	4	782	c.317C>T	c.(316-318)TCC>TTC	p.S106F	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.S106F|ADD2_uc002sha.2_Missense_Mutation_p.S106F|ADD2_uc002sgx.2_Missense_Mutation_p.S106F|ADD2_uc010fdt.1_Missense_Mutation_p.S106F|ADD2_uc002shc.1_Missense_Mutation_p.S106F|ADD2_uc002shd.1_Missense_Mutation_p.S106F|ADD2_uc010fdu.1_Missense_Mutation_p.S122F	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	106					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CATACTCATGGAAGATGTCGG	0.602													24	86					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70933493	70933493	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:70933493C>T	uc002sgz.2	-	3	513	c.48G>A	c.(46-48)CAG>CAA	p.Q16Q	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.Q16Q|ADD2_uc002sha.2_Silent_p.Q16Q|ADD2_uc002sgx.2_Silent_p.Q16Q|ADD2_uc010fdt.1_Silent_p.Q16Q|ADD2_uc002shc.1_Silent_p.Q16Q|ADD2_uc002shd.1_Silent_p.Q16Q|ADD2_uc010fdu.1_Silent_p.Q32Q	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	16					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						AAGGCTGCCCCTGCGGGGGCG	0.642													30	76					0	0	1	0	0
CLEC4F	165530	broad.mit.edu	37	2	71043645	71043645	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71043645C>T	uc002shf.2	-	4	945	c.868G>A	c.(868-870)GAA>AAA	p.E290K	CLEC4F_uc010yqv.1_Missense_Mutation_p.E290K	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	290	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						TGCAAATTTTCCTTTAGTCCC	0.418													55	157					0	0	1	0	0
CLEC4F	165530	broad.mit.edu	37	2	71044053	71044053	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71044053C>T	uc002shf.2	-	4	537	c.460G>A	c.(460-462)GGA>AGA	p.G154R	CLEC4F_uc010yqv.1_Missense_Mutation_p.G154R	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	154	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						TTTAGAACTCCTTTTACCATC	0.478													19	91					0	0	1	0	0
ZNF638	27332	broad.mit.edu	37	2	71576875	71576875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71576875C>T	uc002shx.2	+	2	1110	c.791C>T	c.(790-792)CCT>CTT	p.P264L	ZNF638_uc010fec.2_Missense_Mutation_p.P370L|ZNF638_uc010yqw.1_Intron|ZNF638_uc002shw.2_Missense_Mutation_p.P264L|ZNF638_uc002shy.2_Missense_Mutation_p.P264L|ZNF638_uc002shz.2_Missense_Mutation_p.P264L|ZNF638_uc002sia.2_Missense_Mutation_p.P264L|ZNF638_uc002sib.1_Missense_Mutation_p.P264L	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	264					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						TCTATGTTTCCTGTTGAAGAC	0.428													58	147					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71709035	71709035	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71709035C>T	uc002sie.2	+	3	547	c.171C>T	c.(169-171)ATC>ATT	p.I57I	DYSF_uc010feg.2_Silent_p.I57I|DYSF_uc010feh.2_Silent_p.I57I|DYSF_uc002sig.3_Silent_p.I57I|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.I57I|DYSF_uc010fef.2_Silent_p.I57I|DYSF_uc010fei.2_Silent_p.I57I|DYSF_uc010fek.2_Silent_p.I58I|DYSF_uc010fej.2_Silent_p.I58I|DYSF_uc010fel.2_Silent_p.I58I|DYSF_uc010feo.2_Silent_p.I58I|DYSF_uc010fem.2_Silent_p.I58I|DYSF_uc010fen.2_Silent_p.I58I|DYSF_uc002sif.2_Silent_p.I58I	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	57	Cytoplasmic (Potential).|C2 1.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TCAAGGGCATCCCCCTGGACC	0.418													11	26					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71709037	71709037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71709037C>T	uc002sie.2	+	3	549	c.173C>T	c.(172-174)CCC>CTC	p.P58L	DYSF_uc010feg.2_Missense_Mutation_p.P58L|DYSF_uc010feh.2_Missense_Mutation_p.P58L|DYSF_uc002sig.3_Missense_Mutation_p.P58L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P58L|DYSF_uc010fef.2_Missense_Mutation_p.P58L|DYSF_uc010fei.2_Missense_Mutation_p.P58L|DYSF_uc010fek.2_Missense_Mutation_p.P59L|DYSF_uc010fej.2_Missense_Mutation_p.P59L|DYSF_uc010fel.2_Missense_Mutation_p.P59L|DYSF_uc010feo.2_Missense_Mutation_p.P59L|DYSF_uc010fem.2_Missense_Mutation_p.P59L|DYSF_uc010fen.2_Missense_Mutation_p.P59L|DYSF_uc002sif.2_Missense_Mutation_p.P59L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	58	Cytoplasmic (Potential).|C2 1.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AAGGGCATCCCCCTGGACCAG	0.423													11	25					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71730343	71730343	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71730343G>A	uc002sie.2	+	4	613	c.237_splice	c.e4-1	p.R79_splice	DYSF_uc010feg.2_Splice_Site_p.R79_splice|DYSF_uc010feh.2_Splice_Site_p.R79_splice|DYSF_uc002sig.3_Splice_Site_p.R79_splice|DYSF_uc010yqx.1_Splice_Site|DYSF_uc010fee.2_Splice_Site_p.R79_splice|DYSF_uc010fef.2_Splice_Site_p.R79_splice|DYSF_uc010fei.2_Splice_Site_p.R79_splice|DYSF_uc010fek.2_Splice_Site_p.R80_splice|DYSF_uc010fej.2_Splice_Site_p.R80_splice|DYSF_uc010fel.2_Splice_Site_p.R80_splice|DYSF_uc010feo.2_Splice_Site_p.R80_splice|DYSF_uc010fem.2_Splice_Site_p.R80_splice|DYSF_uc010fen.2_Splice_Site_p.R80_splice|DYSF_uc002sif.2_Splice_Site_p.R80_splice	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8							cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TCTCCTCTCAGGTTCCTGGGG	0.597													63	168					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71742858	71742858	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71742858G>A	uc002sie.2	+	7	1145	c.769G>A	c.(769-771)GGA>AGA	p.G257R	DYSF_uc010feg.2_Missense_Mutation_p.G288R|DYSF_uc010feh.2_Missense_Mutation_p.G257R|DYSF_uc002sig.3_Missense_Mutation_p.G257R|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.G257R|DYSF_uc010fef.2_Missense_Mutation_p.G288R|DYSF_uc010fei.2_Missense_Mutation_p.G288R|DYSF_uc010fek.2_Missense_Mutation_p.G289R|DYSF_uc010fej.2_Missense_Mutation_p.G258R|DYSF_uc010fel.2_Missense_Mutation_p.G258R|DYSF_uc010feo.2_Missense_Mutation_p.G289R|DYSF_uc010fem.2_Missense_Mutation_p.G258R|DYSF_uc010fen.2_Missense_Mutation_p.G289R|DYSF_uc002sif.2_Missense_Mutation_p.G258R	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	257	Cytoplasmic (Potential).|C2 2.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GATCCACAAGGGAAACAGCCC	0.612													17	54					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71744131	71744131	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71744131C>T	uc002sie.2	+	9	1244	c.868C>T	c.(868-870)CGT>TGT	p.R290C	DYSF_uc010feg.2_Missense_Mutation_p.R321C|DYSF_uc010feh.2_Missense_Mutation_p.R290C|DYSF_uc002sig.3_Missense_Mutation_p.R290C|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R290C|DYSF_uc010fef.2_Missense_Mutation_p.R321C|DYSF_uc010fei.2_Missense_Mutation_p.R321C|DYSF_uc010fek.2_Missense_Mutation_p.R322C|DYSF_uc010fej.2_Missense_Mutation_p.R291C|DYSF_uc010fel.2_Missense_Mutation_p.R291C|DYSF_uc010feo.2_Missense_Mutation_p.R322C|DYSF_uc010fem.2_Missense_Mutation_p.R291C|DYSF_uc010fen.2_Missense_Mutation_p.R322C|DYSF_uc002sif.2_Missense_Mutation_p.R291C	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	290	Cytoplasmic (Potential).|C2 2.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGTAGACTCTCGTTCTCTCAG	0.498													29	102					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71747977	71747977	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71747977G>A	uc002sie.2	+	11	1372	c.996G>A	c.(994-996)GGG>GGA	p.G332G	DYSF_uc010feg.2_Silent_p.G363G|DYSF_uc010feh.2_Silent_p.G332G|DYSF_uc002sig.3_Silent_p.G332G|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.G332G|DYSF_uc010fef.2_Silent_p.G363G|DYSF_uc010fei.2_Silent_p.G363G|DYSF_uc010fek.2_Silent_p.G364G|DYSF_uc010fej.2_Silent_p.G333G|DYSF_uc010fel.2_Silent_p.G333G|DYSF_uc010feo.2_Silent_p.G364G|DYSF_uc010fem.2_Silent_p.G333G|DYSF_uc010fen.2_Silent_p.G364G|DYSF_uc002sif.2_Silent_p.G333G	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	332	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TCTCTGCTGGGGCCAGAGGCT	0.572													27	92					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71747982	71747982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71747982G>A	uc002sie.2	+	11	1377	c.1001G>A	c.(1000-1002)AGA>AAA	p.R334K	DYSF_uc010feg.2_Missense_Mutation_p.R365K|DYSF_uc010feh.2_Missense_Mutation_p.R334K|DYSF_uc002sig.3_Missense_Mutation_p.R334K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R334K|DYSF_uc010fef.2_Missense_Mutation_p.R365K|DYSF_uc010fei.2_Missense_Mutation_p.R365K|DYSF_uc010fek.2_Missense_Mutation_p.R366K|DYSF_uc010fej.2_Missense_Mutation_p.R335K|DYSF_uc010fel.2_Missense_Mutation_p.R335K|DYSF_uc010feo.2_Missense_Mutation_p.R366K|DYSF_uc010fem.2_Missense_Mutation_p.R335K|DYSF_uc010fen.2_Missense_Mutation_p.R366K|DYSF_uc002sif.2_Missense_Mutation_p.R335K	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	334	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GCTGGGGCCAGAGGCTACCTG	0.572													27	92					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71762184	71762184	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71762184C>T	uc002sie.2	+	14	1694	c.1318C>T	c.(1318-1320)CCT>TCT	p.P440S	DYSF_uc010feg.2_Missense_Mutation_p.P471S|DYSF_uc010feh.2_Missense_Mutation_p.P440S|DYSF_uc002sig.3_Missense_Mutation_p.P440S|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P440S|DYSF_uc010fef.2_Missense_Mutation_p.P471S|DYSF_uc010fei.2_Missense_Mutation_p.P471S|DYSF_uc010fek.2_Missense_Mutation_p.P472S|DYSF_uc010fej.2_Missense_Mutation_p.P441S|DYSF_uc010fel.2_Missense_Mutation_p.P441S|DYSF_uc010feo.2_Missense_Mutation_p.P472S|DYSF_uc010fem.2_Missense_Mutation_p.P441S|DYSF_uc010fen.2_Missense_Mutation_p.P472S|DYSF_uc002sif.2_Missense_Mutation_p.P441S	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	440	Cytoplasmic (Potential).|C2 3.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GACGGCCAACCCTCAGTGGAA	0.627													15	62					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71778763	71778763	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71778763G>A	uc002sie.2	+	19	2041	c.1665G>A	c.(1663-1665)CGG>CGA	p.R555R	DYSF_uc010feg.2_Silent_p.R586R|DYSF_uc010feh.2_Silent_p.R541R|DYSF_uc002sig.3_Silent_p.R541R|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.R555R|DYSF_uc010fef.2_Silent_p.R572R|DYSF_uc010fei.2_Silent_p.R572R|DYSF_uc010fek.2_Silent_p.R573R|DYSF_uc010fej.2_Silent_p.R542R|DYSF_uc010fel.2_Silent_p.R542R|DYSF_uc010feo.2_Silent_p.R587R|DYSF_uc010fem.2_Silent_p.R556R|DYSF_uc010fen.2_Silent_p.R573R|DYSF_uc002sif.2_Silent_p.R556R	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	555	Cytoplasmic (Potential).		R -> W (in isolated hyperCKemia, LGMD2B and MMD1).			cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ATCGTGGCCGGCTTCTGCTCT	0.637													6	15					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71795107	71795107	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71795107C>T	uc002sie.2	+	25	2914	c.2538C>T	c.(2536-2538)GCC>GCT	p.A846A	DYSF_uc010feg.2_Silent_p.A877A|DYSF_uc010feh.2_Silent_p.A832A|DYSF_uc002sig.3_Silent_p.A832A|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.A846A|DYSF_uc010fef.2_Silent_p.A863A|DYSF_uc010fei.2_Silent_p.A863A|DYSF_uc010fek.2_Silent_p.A864A|DYSF_uc010fej.2_Silent_p.A833A|DYSF_uc010fel.2_Silent_p.A833A|DYSF_uc010feo.2_Silent_p.A878A|DYSF_uc010fem.2_Silent_p.A847A|DYSF_uc010fen.2_Silent_p.A864A|DYSF_uc002sif.2_Silent_p.A847A	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	846	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TGCCTGGCGCCCGGATGCCAG	0.572													35	65					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71839802	71839802	+	Missense_Mutation	SNP	C	T	T	rs138268837		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71839802C>T	uc002sie.2	+	39	4575	c.4199C>T	c.(4198-4200)CCC>CTC	p.P1400L	DYSF_uc010feg.2_Missense_Mutation_p.P1431L|DYSF_uc010feh.2_Missense_Mutation_p.P1386L|DYSF_uc002sig.3_Missense_Mutation_p.P1386L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P1400L|DYSF_uc010fef.2_Missense_Mutation_p.P1417L|DYSF_uc010fei.2_Missense_Mutation_p.P1417L|DYSF_uc010fek.2_Missense_Mutation_p.P1418L|DYSF_uc010fej.2_Missense_Mutation_p.P1387L|DYSF_uc010fel.2_Missense_Mutation_p.P1387L|DYSF_uc010feo.2_Missense_Mutation_p.P1432L|DYSF_uc010fem.2_Missense_Mutation_p.P1401L|DYSF_uc010fen.2_Missense_Mutation_p.P1418L|DYSF_uc002sif.2_Missense_Mutation_p.P1401L|DYSF_uc010yqy.1_Missense_Mutation_p.P281L|DYSF_uc010yqz.1_Missense_Mutation_p.P140L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1400	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TACTGCCCCCCCATCACCGTC	0.622													26	81					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71839936	71839936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71839936G>A	uc002sie.2	+	39	4709	c.4333G>A	c.(4333-4335)GAC>AAC	p.D1445N	DYSF_uc010feg.2_Missense_Mutation_p.D1476N|DYSF_uc010feh.2_Missense_Mutation_p.D1431N|DYSF_uc002sig.3_Missense_Mutation_p.D1431N|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.D1445N|DYSF_uc010fef.2_Missense_Mutation_p.D1462N|DYSF_uc010fei.2_Missense_Mutation_p.D1462N|DYSF_uc010fek.2_Missense_Mutation_p.D1463N|DYSF_uc010fej.2_Missense_Mutation_p.D1432N|DYSF_uc010fel.2_Missense_Mutation_p.D1432N|DYSF_uc010feo.2_Missense_Mutation_p.D1477N|DYSF_uc010fem.2_Missense_Mutation_p.D1446N|DYSF_uc010fen.2_Missense_Mutation_p.D1463N|DYSF_uc002sif.2_Missense_Mutation_p.D1446N|DYSF_uc010yqy.1_Missense_Mutation_p.D326N|DYSF_uc010yqz.1_Missense_Mutation_p.D185N	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1445	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGGTGGCCCAGGTAGGGGAAG	0.632													7	28					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71871187	71871187	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71871187C>T	uc002sie.2	+	41	4879	c.4503C>T	c.(4501-4503)ACC>ACT	p.T1501T	DYSF_uc010feg.2_Silent_p.T1532T|DYSF_uc010feh.2_Silent_p.T1508T|DYSF_uc002sig.3_Silent_p.T1487T|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.T1522T|DYSF_uc010fef.2_Silent_p.T1539T|DYSF_uc010fei.2_Silent_p.T1518T|DYSF_uc010fek.2_Silent_p.T1519T|DYSF_uc010fej.2_Silent_p.T1509T|DYSF_uc010fel.2_Silent_p.T1488T|DYSF_uc010feo.2_Silent_p.T1533T|DYSF_uc010fem.2_Silent_p.T1523T|DYSF_uc010fen.2_Silent_p.T1540T|DYSF_uc002sif.2_Silent_p.T1502T|DYSF_uc010yqy.1_Silent_p.T382T|DYSF_uc010yqz.1_Silent_p.T262T	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1501	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ATTTTGACACCCTGAAGGTAA	0.507													4	14					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71887770	71887770	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71887770C>T	uc002sie.2	+	44	5251	c.4875C>T	c.(4873-4875)CCC>CCT	p.P1625P	DYSF_uc010feg.2_Silent_p.P1656P|DYSF_uc010feh.2_Silent_p.P1632P|DYSF_uc002sig.3_Silent_p.P1611P|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.P1646P|DYSF_uc010fef.2_Silent_p.P1663P|DYSF_uc010fei.2_Silent_p.P1642P|DYSF_uc010fek.2_Silent_p.P1643P|DYSF_uc010fej.2_Silent_p.P1633P|DYSF_uc010fel.2_Silent_p.P1612P|DYSF_uc010feo.2_Silent_p.P1657P|DYSF_uc010fem.2_Silent_p.P1647P|DYSF_uc010fen.2_Silent_p.P1664P|DYSF_uc002sif.2_Silent_p.P1626P|DYSF_uc010yqy.1_Silent_p.P506P|DYSF_uc010yqz.1_Silent_p.P386P	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1625	Cytoplasmic (Potential).|C2 5.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CGCTGGAGCCCGTATTTGGAA	0.507													16	37					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71891404	71891404	+	Silent	SNP	C	T	T	rs151276652	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71891404C>T	uc002sie.2	+	45	5269	c.4893C>T	c.(4891-4893)TTC>TTT	p.F1631F	DYSF_uc010feg.2_Silent_p.F1662F|DYSF_uc010feh.2_Silent_p.F1638F|DYSF_uc002sig.3_Silent_p.F1617F|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.F1652F|DYSF_uc010fef.2_Silent_p.F1669F|DYSF_uc010fei.2_Silent_p.F1648F|DYSF_uc010fek.2_Silent_p.F1649F|DYSF_uc010fej.2_Silent_p.F1639F|DYSF_uc010fel.2_Silent_p.F1618F|DYSF_uc010feo.2_Silent_p.F1663F|DYSF_uc010fem.2_Silent_p.F1653F|DYSF_uc010fen.2_Silent_p.F1670F|DYSF_uc002sif.2_Silent_p.F1632F|DYSF_uc010yqy.1_Silent_p.F512F|DYSF_uc010yqz.1_Silent_p.F392F	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1631	Cytoplasmic (Potential).|C2 5.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GCAGGATGTTCGAGCTGACCT	0.572													33	65					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71891540	71891540	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71891540C>T	uc002sie.2	+	45	5405	c.5029C>T	c.(5029-5031)CGC>TGC	p.R1677C	DYSF_uc010feg.2_Missense_Mutation_p.R1708C|DYSF_uc010feh.2_Missense_Mutation_p.R1684C|DYSF_uc002sig.3_Missense_Mutation_p.R1663C|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R1698C|DYSF_uc010fef.2_Missense_Mutation_p.R1715C|DYSF_uc010fei.2_Missense_Mutation_p.R1694C|DYSF_uc010fek.2_Missense_Mutation_p.R1695C|DYSF_uc010fej.2_Missense_Mutation_p.R1685C|DYSF_uc010fel.2_Missense_Mutation_p.R1664C|DYSF_uc010feo.2_Missense_Mutation_p.R1709C|DYSF_uc010fem.2_Missense_Mutation_p.R1699C|DYSF_uc010fen.2_Missense_Mutation_p.R1716C|DYSF_uc002sif.2_Missense_Mutation_p.R1678C|DYSF_uc010yqy.1_Missense_Mutation_p.R558C|DYSF_uc010yqz.1_Missense_Mutation_p.R438C	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1677	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GTTTGGGGCTCGCTGTGGACT	0.552													22	45					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71892314	71892314	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71892314G>A	uc002sie.2	+	46	5456	c.5080G>A	c.(5080-5082)GAC>AAC	p.D1694N	DYSF_uc010feg.2_Missense_Mutation_p.D1725N|DYSF_uc010feh.2_Missense_Mutation_p.D1701N|DYSF_uc002sig.3_Missense_Mutation_p.D1680N|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.D1715N|DYSF_uc010fef.2_Missense_Mutation_p.D1732N|DYSF_uc010fei.2_Missense_Mutation_p.D1711N|DYSF_uc010fek.2_Missense_Mutation_p.D1712N|DYSF_uc010fej.2_Missense_Mutation_p.D1702N|DYSF_uc010fel.2_Missense_Mutation_p.D1681N|DYSF_uc010feo.2_Missense_Mutation_p.D1726N|DYSF_uc010fem.2_Missense_Mutation_p.D1716N|DYSF_uc010fen.2_Missense_Mutation_p.D1733N|DYSF_uc002sif.2_Missense_Mutation_p.D1695N|DYSF_uc010yqy.1_Missense_Mutation_p.D575N|DYSF_uc010yqz.1_Missense_Mutation_p.D455N	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1694	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CCAGTGGCGGGACCAGCTCCG	0.562													67	115					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71901373	71901373	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71901373G>A	uc002sie.2	+	51	6090	c.5714G>A	c.(5713-5715)CGA>CAA	p.R1905Q	DYSF_uc010feg.2_Missense_Mutation_p.R1936Q|DYSF_uc010feh.2_Missense_Mutation_p.R1912Q|DYSF_uc002sig.3_Missense_Mutation_p.R1891Q|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R1926Q|DYSF_uc010fef.2_Missense_Mutation_p.R1943Q|DYSF_uc010fei.2_Missense_Mutation_p.R1922Q|DYSF_uc010fek.2_Missense_Mutation_p.R1923Q|DYSF_uc010fej.2_Missense_Mutation_p.R1913Q|DYSF_uc010fel.2_Missense_Mutation_p.R1892Q|DYSF_uc010feo.2_Missense_Mutation_p.R1937Q|DYSF_uc010fem.2_Missense_Mutation_p.R1927Q|DYSF_uc010fen.2_Missense_Mutation_p.R1944Q|DYSF_uc002sif.2_Missense_Mutation_p.R1906Q|DYSF_uc010yqy.1_Missense_Mutation_p.R786Q|DYSF_uc010yqz.1_Missense_Mutation_p.R666Q	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1905	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ATCCCAGCACGAGTGGTGTTC	0.517													27	56					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71906323	71906323	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71906323G>A	uc002sie.2	+	52	6280	c.5904G>A	c.(5902-5904)TGG>TGA	p.W1968*	DYSF_uc010feg.2_Nonsense_Mutation_p.W1999*|DYSF_uc010feh.2_Nonsense_Mutation_p.W1975*|DYSF_uc002sig.3_Nonsense_Mutation_p.W1954*|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Nonsense_Mutation_p.W1989*|DYSF_uc010fef.2_Nonsense_Mutation_p.W2006*|DYSF_uc010fei.2_Nonsense_Mutation_p.W1985*|DYSF_uc010fek.2_Nonsense_Mutation_p.W1986*|DYSF_uc010fej.2_Nonsense_Mutation_p.W1976*|DYSF_uc010fel.2_Nonsense_Mutation_p.W1955*|DYSF_uc010feo.2_Nonsense_Mutation_p.W2000*|DYSF_uc010fem.2_Nonsense_Mutation_p.W1990*|DYSF_uc010fen.2_Nonsense_Mutation_p.W2007*|DYSF_uc002sif.2_Nonsense_Mutation_p.W1969*|DYSF_uc010yqy.1_Nonsense_Mutation_p.W849*|DYSF_uc010yqz.1_Nonsense_Mutation_p.W729*	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1968	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TGAAGGGCTGGTGGCCCTGTG	0.522													15	48					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71908145	71908145	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71908145G>A	uc002sie.2	+	53	6337	c.5961G>A	c.(5959-5961)ATG>ATA	p.M1987I	DYSF_uc010feg.2_Missense_Mutation_p.M2018I|DYSF_uc010feh.2_Missense_Mutation_p.M1994I|DYSF_uc002sig.3_Missense_Mutation_p.M1973I|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.M2008I|DYSF_uc010fef.2_Missense_Mutation_p.M2025I|DYSF_uc010fei.2_Missense_Mutation_p.M2004I|DYSF_uc010fek.2_Missense_Mutation_p.M2005I|DYSF_uc010fej.2_Missense_Mutation_p.M1995I|DYSF_uc010fel.2_Missense_Mutation_p.M1974I|DYSF_uc010feo.2_Missense_Mutation_p.M2019I|DYSF_uc010fem.2_Missense_Mutation_p.M2009I|DYSF_uc010fen.2_Missense_Mutation_p.M2026I|DYSF_uc002sif.2_Missense_Mutation_p.M1988I|DYSF_uc010yqy.1_Missense_Mutation_p.M868I|DYSF_uc010yqz.1_Missense_Mutation_p.M748I	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1987	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AGCTGGAAATGACCTTGGAGA	0.572													6	26					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71909718	71909718	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:71909718C>T	uc002sie.2	+	54	6491	c.6115C>T	c.(6115-6117)CTG>TTG	p.L2039L	DYSF_uc010feg.2_Silent_p.L2070L|DYSF_uc010feh.2_Silent_p.L2046L|DYSF_uc002sig.3_Silent_p.L2025L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.L2060L|DYSF_uc010fef.2_Silent_p.L2077L|DYSF_uc010fei.2_Silent_p.L2056L|DYSF_uc010fek.2_Silent_p.L2057L|DYSF_uc010fej.2_Silent_p.L2047L|DYSF_uc010fel.2_Silent_p.L2026L|DYSF_uc010feo.2_Silent_p.L2071L|DYSF_uc010fem.2_Silent_p.L2061L|DYSF_uc010fen.2_Silent_p.L2078L|DYSF_uc002sif.2_Silent_p.L2040L|DYSF_uc010yqy.1_Silent_p.L920L|DYSF_uc010yqz.1_Silent_p.L800L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	2039	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GAAGTTCATCCTGTGGCGGCG	0.512													43	91					0	0	1	0	0
CYP26B1	56603	broad.mit.edu	37	2	72360181	72360181	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:72360181G>A	uc002sih.1	-	5	1117	c.1117C>T	c.(1117-1119)CGC>TGC	p.R373C	CYP26B1_uc010yra.1_Missense_Mutation_p.R356C|CYP26B1_uc010yrb.1_Missense_Mutation_p.R298C	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	373					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						AGCACAGTGCGGTAGCCGCCG	0.682													21	54					0	0	1	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73315552	73315552	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73315552C>T	uc002siu.3	-	3	1435	c.1194G>A	c.(1192-1194)GAG>GAA	p.E398E	RAB11FIP5_uc002sit.3_Silent_p.E320E	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	398					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						CAAGCACTGCCTCTGAGCTGC	0.647													18	75					0	0	1	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73315572	73315572	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73315572G>A	uc002siu.3	-	3	1415	c.1174C>T	c.(1174-1176)CGT>TGT	p.R392C	RAB11FIP5_uc002sit.3_Missense_Mutation_p.R314C	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	392					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						CTGTTGCTACGACTGCCTCTG	0.637													21	74					0	0	1	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73315777	73315777	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73315777G>A	uc002siu.3	-	3	1210	c.969C>T	c.(967-969)GAC>GAT	p.D323D	RAB11FIP5_uc002sit.3_Silent_p.D245D	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	323					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						GGCCCTGAAGGTCCAGAAGGG	0.622													11	25					0	0	1	0	0
CCT7	10574	broad.mit.edu	37	2	73476202	73476202	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73476202C>T	uc002siz.2	+	8	969	c.867C>T	c.(865-867)GTC>GTT	p.V289V	CCT7_uc002sja.2_Silent_p.V85V|CCT7_uc010yrf.1_Silent_p.V245V|CCT7_uc010feu.2_Silent_p.V247V|CCT7_uc010yrg.1_Silent_p.V189V|CCT7_uc010yrh.1_Silent_p.V161V|CCT7_uc010yri.1_Silent_p.V202V	NM_006429	NP_006420	Q99832	TCPH_HUMAN	chaperonin containing TCP1, subunit 7 isoform a	289					'de novo' posttranslational protein folding		ATP binding|unfolded protein binding				0						CCAAAGTTGTCTTGTCCAAAC	0.483													19	58					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73676650	73676650	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73676650C>T	uc002sje.1	+	10	3110	c.2999C>T	c.(2998-3000)CCT>CTT	p.P1000L	ALMS1_uc002sjf.1_Missense_Mutation_p.P956L|ALMS1_uc002sjg.2_Missense_Mutation_p.P386L|ALMS1_uc002sjh.1_Missense_Mutation_p.P386L	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	998	34 X 47 AA approximate tandem repeat.|10.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CCAACAGTACCTTCAGGTTCC	0.453													50	120					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73677031	73677031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73677031C>T	uc002sje.1	+	10	3491	c.3380C>T	c.(3379-3381)GCT>GTT	p.A1127V	ALMS1_uc002sjf.1_Missense_Mutation_p.A1083V|ALMS1_uc002sjg.2_Missense_Mutation_p.A513V|ALMS1_uc002sjh.1_Missense_Mutation_p.A513V	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1125	34 X 47 AA approximate tandem repeat.|13.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ATTTCAGTAGCTCCTGGACTA	0.473													50	227					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73678100	73678100	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73678100C>T	uc002sje.1	+	10	4560	c.4449C>T	c.(4447-4449)CCC>CCT	p.P1483P	ALMS1_uc002sjf.1_Silent_p.P1439P|ALMS1_uc002sjg.2_Silent_p.P869P|ALMS1_uc002sjh.1_Silent_p.P869P	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1481	20.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GAGAGAAGCCCATTGTTATCT	0.507													65	131					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73678921	73678921	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73678921C>T	uc002sje.1	+	10	5381	c.5270C>T	c.(5269-5271)TCC>TTC	p.S1757F	ALMS1_uc002sjf.1_Missense_Mutation_p.S1713F|ALMS1_uc002sjg.2_Missense_Mutation_p.S1143F|ALMS1_uc002sjh.1_Missense_Mutation_p.S1143F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1755	34 X 47 AA approximate tandem repeat.|26.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ACTGTAACTTCCTCTTTCTAT	0.433													14	138					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73680076	73680076	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73680076C>T	uc002sje.1	+	10	6536	c.6425C>T	c.(6424-6426)TCC>TTC	p.S2142F	ALMS1_uc002sjf.1_Missense_Mutation_p.S2098F|ALMS1_uc002sjg.2_Missense_Mutation_p.S1528F|ALMS1_uc002sjh.1_Missense_Mutation_p.S1528F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2140	34 X 47 AA approximate tandem repeat.|33.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CTTCCTAGTTCCTTTTCACAT	0.413													16	80					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73682332	73682332	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:73682332C>T	uc002sje.1	+	11	7698	c.7587C>T	c.(7585-7587)TCC>TCT	p.S2529S	ALMS1_uc002sjf.1_Silent_p.S2485S|ALMS1_uc002sjg.2_Silent_p.S1915S|ALMS1_uc002sjh.1_Silent_p.S1915S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2527					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GTGGATACTCCATTTCAGAAT	0.358													16	131					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74041116	74041116	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74041116C>T	uc002sjr.1	+	2	731	c.610C>T	c.(610-612)CCC>TCC	p.P204S		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	204										ovary(2)	2						CCTGTCACTTCCCTGCCAGAT	0.473													23	46					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74042300	74042300	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74042300G>A	uc002sjr.1	+	3	1071	c.950G>A	c.(949-951)AGC>AAC	p.S317N		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	317										ovary(2)	2						TCCTTCAGTAGCAGAAATACC	0.468													17	53					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74042346	74042346	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74042346G>A	uc002sjr.1	+	3	1117	c.996G>A	c.(994-996)GGG>GGA	p.G332G		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	332										ovary(2)	2						CTGAGCTTGGGGACATTTCAA	0.438													16	37					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74042515	74042515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74042515C>T	uc002sjr.1	+	3	1286	c.1165C>T	c.(1165-1167)CCT>TCT	p.P389S		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	389										ovary(2)	2						TCCACTACTTCCTGTAGAAAT	0.423													7	49					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74042709	74042709	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74042709C>T	uc002sjr.1	+	3	1480	c.1359C>T	c.(1357-1359)CTC>CTT	p.L453L		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	453										ovary(2)	2						ATACTTACCTCCCCCCGATCT	0.463													17	22					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74043403	74043403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74043403G>A	uc002sjr.1	+	3	2174	c.2053G>A	c.(2053-2055)GAG>AAG	p.E685K		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	685										ovary(2)	2						TAAAGGCCCGGAGAAAATTCA	0.512													7	70					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74044075	74044075	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74044075G>A	uc002sjr.1	+	3	2846	c.2725G>A	c.(2725-2727)GAA>AAA	p.E909K		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	909										ovary(2)	2						CATTGAAAGGGAAAGAGATAT	0.423													5	16					0	0	1	0	0
ACTG2	72	broad.mit.edu	37	2	74140694	74140694	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74140694C>T	uc002sjw.2	+	6	656	c.534C>T	c.(532-534)CGC>CGT	p.R178R	ACTG2_uc010fey.2_Silent_p.R178R|ACTG2_uc010yrn.1_Silent_p.R135R	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	178					muscle contraction	cytoskeleton|cytosol	ATP binding				0						CCATCATGCGCCTGGACTTGG	0.552													32	105					0	0	1	0	0
ACTG2	72	broad.mit.edu	37	2	74141990	74141990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74141990C>T	uc002sjw.2	+	7	919	c.797C>T	c.(796-798)TCC>TTC	p.S266F	ACTG2_uc010fey.2_Missense_Mutation_p.S266F|ACTG2_uc010yrn.1_Missense_Mutation_p.S223F	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	266					muscle contraction	cytoskeleton|cytosol	ATP binding				0						TTCCAGCCTTCCTTTATTGGT	0.577													20	61					0	0	1	0	0
DGUOK	1716	broad.mit.edu	37	2	74185845	74185845	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74185845C>T	uc002sjx.2	+	7	901	c.816C>T	c.(814-816)ACC>ACT	p.T272T	DGUOK_uc002sjy.2_Silent_p.T184T|DGUOK_uc002sjz.2_RNA	NM_080916	NP_550438	Q16854	DGUOK_HUMAN	deoxyguanosine kinase isoform a precursor	272					guanosine metabolic process|purine base metabolic process|purine deoxyribonucleoside metabolic process|purine-containing compound salvage	mitochondrial matrix	ATP binding|deoxyguanosine kinase activity|phosphotransferase activity, alcohol group as acceptor				0						AGGTAAACACCTTTGTAAAGA	0.413													18	68					0	0	1	0	0
TET3	200424	broad.mit.edu	37	2	74275217	74275217	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74275217C>T	uc002skb.3	+	1	1768	c.1768C>T	c.(1768-1770)CCC>TCC	p.P590S	TET3_uc010fez.1_Missense_Mutation_p.P590S	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	590							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CTTTGGGCTTCCCGGCCCCCC	0.592													18	41					0	0	1	0	0
TET3	200424	broad.mit.edu	37	2	74328067	74328067	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74328067C>T	uc002skb.3	+	9	3747	c.3747C>T	c.(3745-3747)CCC>CCT	p.P1249P		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	1249							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						ACCCCTCCCCCTTTGCCCAGA	0.622													5	9					0	0	1	0	0
TET3	200424	broad.mit.edu	37	2	74328294	74328294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74328294C>T	uc002skb.3	+	9	3974	c.3974C>T	c.(3973-3975)TCG>TTG	p.S1325L		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	1325							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GGTGTGTTCTCGTCTGGGGAG	0.612													9	28					0	0	1	0	0
MTHFD2	10797	broad.mit.edu	37	2	74438352	74438352	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74438352C>T	uc002skk.2	+	6	776	c.697C>T	c.(697-699)CGA>TGA	p.R233*	MTHFD2_uc002skj.2_Nonsense_Mutation_p.R131*|MTHFD2_uc010yro.1_Nonsense_Mutation_p.R131*|MTHFD2_uc010ffb.2_Nonsense_Mutation_p.R192*|MTHFD2_uc010yrp.1_Nonsense_Mutation_p.R69*	NM_006636	NP_006627	P13995	MTDC_HUMAN	methylenetetrahydrofolate dehydrogenase 2	233					folic acid-containing compound biosynthetic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	magnesium ion binding|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NAD+) activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|phosphate binding|protein binding				0					NADH(DB00157)|Tetrahydrofolic acid(DB00116)	AATATCTCATCGATATACTCC	0.398													39	127					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74452007	74452007	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74452007C>T	uc002sko.1	-	24	3256	c.3254G>A	c.(3253-3255)AGG>AAG	p.R1085K	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.R1069K|SLC4A5_uc010ffc.1_Missense_Mutation_p.R988K|SLC4A5_uc002skp.1_Missense_Mutation_p.R967K|SLC4A5_uc002sks.1_Missense_Mutation_p.G977R	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	1085	Extracellular (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TTTTCTCTTCCTCTTCTTGTC	0.502													50	151					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74452068	74452068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74452068C>T	uc002sko.1	-	24	3195	c.3193G>A	c.(3193-3195)GAC>AAC	p.D1065N	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.D1049N|SLC4A5_uc010ffc.1_Missense_Mutation_p.D968N|SLC4A5_uc002skp.1_Missense_Mutation_p.D947N|SLC4A5_uc002sks.1_Silent_p.T956T	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	1065	Extracellular (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						CAGGCCAGGTCGTGCTGGGAA	0.473													28	81					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74460664	74460664	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74460664G>A	uc002sko.1	-	18	2462	c.2460C>T	c.(2458-2460)TTC>TTT	p.F820F	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Silent_p.F820F|SLC4A5_uc010ffc.1_Silent_p.F820F|SLC4A5_uc002skp.1_Silent_p.F718F|SLC4A5_uc002sks.1_Silent_p.F782F	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	820	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						AGGGGGCCACGAACCAGCCTC	0.622													11	28					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74480229	74480229	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74480229G>A	uc002sko.1	-	10	1142	c.1140C>T	c.(1138-1140)GCC>GCT	p.A380A	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Silent_p.A380A|SLC4A5_uc010ffc.1_Silent_p.A380A|SLC4A5_uc002skp.1_Silent_p.A316A|SLC4A5_uc002sks.1_Silent_p.A380A	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	380	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						CCCGATTGCGGGCTTTGTAGG	0.512													19	43					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74489273	74489273	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74489273C>T	uc002sko.1	-	6	804	c.802G>A	c.(802-804)GGA>AGA	p.G268R	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.G268R|SLC4A5_uc010ffc.1_Missense_Mutation_p.G268R|SLC4A5_uc002skp.1_Missense_Mutation_p.G204R|SLC4A5_uc002sks.1_Missense_Mutation_p.G268R	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	268	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						CACAGACGTCCGTAATTTGCA	0.597													7	42					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74489326	74489326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74489326G>A	uc002sko.1	-	6	751	c.749C>T	c.(748-750)CCG>CTG	p.P250L	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.P250L|SLC4A5_uc010ffc.1_Missense_Mutation_p.P250L|SLC4A5_uc002skp.1_Missense_Mutation_p.P186L|SLC4A5_uc002sks.1_Missense_Mutation_p.P250L	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	250	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						GTGTAGACTCGGGCCAGCACC	0.587													12	48					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74542148	74542148	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74542148C>T	uc002sko.1	-	1	5	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.M1I|SLC4A5_uc010ffc.1_Missense_Mutation_p.M1I|SLC4A5_uc002skp.1_Missense_Mutation_p.M1I|SLC4A5_uc002sks.1_Missense_Mutation_p.M1I	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	1	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						CCTTCACCTTCATGACTATAA	0.284													66	156					0	0	1	0	0
DCTN1	1639	broad.mit.edu	37	2	74592677	74592677	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74592677C>T	uc002skx.2	-	25	3305	c.2994G>A	c.(2992-2994)CTG>CTA	p.L998L	SLC4A5_uc002skl.2_5'Flank|DCTN1_uc002skt.1_5'Flank|DCTN1_uc002skv.2_Silent_p.L864L|DCTN1_uc002sku.2_Silent_p.L864L|DCTN1_uc002skw.1_Silent_p.L974L|DCTN1_uc010ffd.2_Silent_p.L978L|DCTN1_uc002sky.2_Silent_p.L961L	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	998	Potential.				cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						GGGTCTCCTCCAGCCGAGTCT	0.577													12	43					0	0	1	0	0
DCTN1	1639	broad.mit.edu	37	2	74595936	74595936	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74595936G>A	uc002skx.2	-	16	2084	c.1773C>T	c.(1771-1773)TTC>TTT	p.F591F	DCTN1_uc002skv.2_Silent_p.F457F|DCTN1_uc002sku.2_Silent_p.F457F|DCTN1_uc002skw.1_Silent_p.F567F|DCTN1_uc010ffd.2_Silent_p.F571F|DCTN1_uc002sky.2_Silent_p.F554F	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	591					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						TGTCAGGCATGAAGGCTGTCA	0.547													26	78					0	0	1	0	0
WBP1	23559	broad.mit.edu	37	2	74687629	74687629	+	Missense_Mutation	SNP	G	A	A	rs143637433	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74687629G>A	uc002slj.1	+	4	784	c.631G>A	c.(631-633)GAC>AAC	p.D211N	WBP1_uc002slh.1_RNA|INO80B_uc002sli.1_RNA|WBP1_uc002slk.1_Missense_Mutation_p.D208N|WBP1_uc002sll.1_RNA	NM_012477	NP_036609	Q96G27	WBP1_HUMAN	WW domain binding protein 1	211							WW domain binding				0						TTTAACTGGCGACTCCGGTAT	0.652													76	150					0	0	1	0	0
LOXL3	84695	broad.mit.edu	37	2	74763927	74763927	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:74763927C>T	uc002smp.1	-	5	893	c.821G>A	c.(820-822)GGG>GAG	p.G274E	LOXL3_uc002smo.1_Intron|LOXL3_uc010ffm.1_Missense_Mutation_p.G274E|LOXL3_uc002smq.1_Intron|LOXL3_uc010ffn.1_Intron	NM_032603	NP_115992	P58215	LOXL3_HUMAN	lysyl oxidase-like 3 precursor	274	SRCR 2.					extracellular space|membrane	copper ion binding|protein-lysine 6-oxidase activity|scavenger receptor activity				0						TGCAGGGCCCCCCCCAGGGCA	0.642													44	95					0	0	1	0	0
HK2	3099	broad.mit.edu	37	2	75107456	75107456	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:75107456C>T	uc002snd.2	+	10	3256	c.1330C>T	c.(1330-1332)CGC>TGC	p.R444C		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	444	Regulatory.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						CCGCTTCCTCCGCTCCGAGGA	0.617													113	228					0	0	1	0	0
HK2	3099	broad.mit.edu	37	2	75115153	75115153	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:75115153C>T	uc002snd.2	+	16	4269	c.2343C>T	c.(2341-2343)ATC>ATT	p.I781I		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	781	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						CAAGGGGCATCTTTGAAACCA	0.512													53	130					0	0	1	0	0
TACR1	6869	broad.mit.edu	37	2	75347872	75347872	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:75347872G>A	uc002sng.2	-	2	997	c.412C>T	c.(412-414)CTC>TTC	p.L138F	TACR1_uc002snh.2_Missense_Mutation_p.L138F	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	138	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	CGGGGCTGGAGGGGATGTATG	0.517													17	45					0	0	1	0	0
C2orf3	6936	broad.mit.edu	37	2	75929446	75929447	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:75929446_75929447GG>AA	uc002sno.2	-	3	627_628	c.497_498CC>TT	c.(496-498)TCC>TTT	p.S166F	C2orf3_uc010ffs.2_5'Flank|C2orf3_uc002snn.2_5'UTR|C2orf3_uc010fft.2_5'UTR|C2orf3_uc002snp.3_Missense_Mutation_p.S166F	NM_003203	NP_003194	P16383	GCF_HUMAN	hypothetical protein LOC6936	166					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						TACCAGAGATGGAGGAGGTATG	0.45													57	119					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746607	77746607	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:77746607G>A	uc002snr.2	-	3	803	c.388C>T	c.(388-390)CAC>TAC	p.H130Y	LRRTM4_uc002snq.2_Missense_Mutation_p.H130Y|LRRTM4_uc002sns.2_Missense_Mutation_p.H130Y|LRRTM4_uc002snt.2_Missense_Mutation_p.H131Y	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	130	LRR 3.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		GGAACTGGGTGAAATGTTTTA	0.388													36	44					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746666	77746666	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:77746666C>T	uc002snr.2	-	3	744	c.329G>A	c.(328-330)AGA>AAA	p.R110K	LRRTM4_uc002snq.2_Missense_Mutation_p.R110K|LRRTM4_uc002sns.2_Missense_Mutation_p.R110K|LRRTM4_uc002snt.2_Missense_Mutation_p.R111K	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	110	LRR 3.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TTCTTTCAGTCTACGGATCCC	0.388													13	54					0	0	1	0	0
REG3G	130120	broad.mit.edu	37	2	79253856	79253856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:79253856G>A	uc002snw.2	+	3	179	c.94G>A	c.(94-96)GAA>AAA	p.E32K	REG3G_uc002snx.2_Missense_Mutation_p.E32K|REG3G_uc010ffu.2_Missense_Mutation_p.E32K	NM_198448	NP_940850	Q6UW15	REG3G_HUMAN	regenerating islet-derived 3 gamma precursor	32					acute-phase response	extracellular region	sugar binding				0						AACCCAGAAGGAACTGCCCTC	0.532													20	49					0	0	1	0	0
REG1B	5968	broad.mit.edu	37	2	79313613	79313613	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:79313613C>T	uc002sny.2	-	4	313	c.201G>A	c.(199-201)ATG>ATA	p.M67I	REG1B_uc010ffv.1_Missense_Mutation_p.M67I|REG1B_uc010ffw.2_3'UTR	NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor	67	C-type lectin.				cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						TGCCTGAATTCATGTTCTGGC	0.498													31	104					0	0	1	0	0
REG1B	5968	broad.mit.edu	37	2	79314691	79314691	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:79314691G>A	uc002sny.2	-	2	160	c.48C>T	c.(46-48)TTC>TTT	p.F16F	REG1B_uc010ffv.1_Silent_p.F16F|REG1B_uc010ffw.2_Silent_p.F16F	NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor	16					cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						TCAGAGACAGGAACATCAGGG	0.473													16	33					0	0	1	0	0
REG1A	5967	broad.mit.edu	37	2	79350286	79350286	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:79350286G>A	uc002snz.2	+	6	549	c.446G>A	c.(445-447)TGG>TAG	p.W149*	REG1A_uc010ysd.1_Nonsense_Mutation_p.W149*	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	149	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						TTCCAGAAATGGAAGGATGTG	0.418													23	39					0	0	1	0	0
REG1P	5969	broad.mit.edu	37	2	79363156	79363156	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:79363156G>A	uc002soa.1	-	4		c.1158C>T			REG1P_uc002sob.1_RNA|REG1P_uc002soc.1_RNA					Homo sapiens mRNA for Reg-related sequence derived peptide-1, complete cds.												0						AATGTCCCAGGATTTGTAGGA	0.517													6	24					0	0	1	0	0
REG1P	5969	broad.mit.edu	37	2	79363967	79363967	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:79363967C>T	uc002soa.1	-	4		c.347G>A			REG1P_uc002sob.1_RNA|REG1P_uc002soc.1_RNA					Homo sapiens mRNA for Reg-related sequence derived peptide-1, complete cds.												0						TGGTGCCACTCTCTTTAATCA	0.522													17	31					0	0	1	0	0
REG3A	5068	broad.mit.edu	37	2	79384754	79384754	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:79384754C>T	uc002sod.1	-	4	659	c.404G>A	c.(403-405)AGA>AAA	p.R135K	REG3A_uc002soe.1_Missense_Mutation_p.R135K|REG3A_uc002sof.1_Missense_Mutation_p.R135K	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	135	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						GGAGGGATTTCTCTCCCATGC	0.537													38	94					0	0	1	0	0
CTNNA2	1496	broad.mit.edu	37	2	79878690	79878690	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:79878690C>T	uc010ysh.1	+	1	13	c.8C>T	c.(7-9)TCG>TTG	p.S3L	CTNNA2_uc010yse.1_Missense_Mutation_p.S3L|CTNNA2_uc010ysf.1_Missense_Mutation_p.S3L|CTNNA2_uc010ysg.1_Missense_Mutation_p.S3L|hsa-mir-4264|MI0015877_5'Flank	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	3					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AGCATGACTTCGGCAACTTCA	0.403													26	69					0	0	1	0	0
CTNNA2	1496	broad.mit.edu	37	2	80772140	80772140	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:80772140G>A	uc010ysh.1	+	9	1329	c.1324G>A	c.(1324-1326)GAA>AAA	p.E442K	CTNNA2_uc010yse.1_Missense_Mutation_p.E442K|CTNNA2_uc010ysf.1_Missense_Mutation_p.E442K|CTNNA2_uc010ysg.1_Missense_Mutation_p.E442K|CTNNA2_uc010ysi.1_Missense_Mutation_p.E74K	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	442					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						CTCCAACAATGAAGAAGGGGT	0.468													11	44					0	0	1	0	0
CTNNA2	1496	broad.mit.edu	37	2	80782861	80782861	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:80782861C>T	uc010ysh.1	+	11	1589	c.1584C>T	c.(1582-1584)CTC>CTT	p.L528L	CTNNA2_uc010yse.1_Silent_p.L528L|CTNNA2_uc010ysf.1_Silent_p.L528L|CTNNA2_uc010ysg.1_Silent_p.L528L|CTNNA2_uc010ysi.1_Silent_p.L160L	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	528					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TGATAGCCCTCCAAGAGGGCG	0.483													29	84					0	0	1	0	0
CTNNA2	1496	broad.mit.edu	37	2	80874910	80874910	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:80874910C>T	uc010ysh.1	+	18	2780	c.2775C>T	c.(2773-2775)TTC>TTT	p.F925F	CTNNA2_uc010yse.1_Silent_p.F877F|CTNNA2_uc010ysf.1_Silent_p.F877F|CTNNA2_uc010ysg.1_Silent_p.F832F|CTNNA2_uc010ysi.1_Silent_p.F509F|CTNNA2_uc010ysj.1_Silent_p.F206F	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	925					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						CTGAAGAATTCCAGACACGAG	0.458													49	189					0	0	1	0	0
DNAH6	1768	broad.mit.edu	37	2	84780088	84780088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:84780088C>T	uc010fgb.2	+	10	1669	c.1532C>T	c.(1531-1533)CCC>CTC	p.P511L	DNAH6_uc002soo.2_Missense_Mutation_p.P90L|DNAH6_uc002sop.2_Missense_Mutation_p.P90L	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	511	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						TCTCTCATCCCCATGTTTCTC	0.398													33	121					0	0	1	0	0
DNAH6	1768	broad.mit.edu	37	2	84784977	84784977	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:84784977G>A	uc010fgb.2	+	11	1858	c.1721G>A	c.(1720-1722)GGA>GAA	p.G574E	DNAH6_uc002soo.2_Missense_Mutation_p.G153E|DNAH6_uc002sop.2_Missense_Mutation_p.G153E	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	574	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						AAACTTGAAGGAAAAACCTGT	0.358													23	148					0	0	1	0	0
DNAH6	1768	broad.mit.edu	37	2	84800711	84800711	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:84800711G>C	uc010fgb.2	+	12	2061	c.1924G>C	c.(1924-1926)GAT>CAT	p.D642H	DNAH6_uc002soo.2_Missense_Mutation_p.D221H|DNAH6_uc002sop.2_Missense_Mutation_p.D221H	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	642	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						TCAGGAACCTGGTAACTTGTC	0.363													40	106					0	0	1	0	0
DNAH6	1768	broad.mit.edu	37	2	84811201	84811201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:84811201C>T	uc010fgb.2	+	15	2445	c.2308C>T	c.(2308-2310)CCT>TCT	p.P770S	DNAH6_uc002soo.2_Missense_Mutation_p.P349S|DNAH6_uc002sop.2_Missense_Mutation_p.P349S	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	770	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						GCCCACACCTCCTGAAGACTT	0.398													36	133					0	0	1	0	0
C2orf89	129293	broad.mit.edu	37	2	85051079	85051079	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:85051079C>T	uc010ysl.1	-	6	1421	c.1332G>A	c.(1330-1332)GAG>GAA	p.E444E	C2orf89_uc002sou.3_Silent_p.E395E	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	444	Extracellular (Potential).					integral to membrane				ovary(1)	1						CGCCTGACCTCTCCTCCAGGC	0.647													9	24					0	0	1	0	0
C2orf89	129293	broad.mit.edu	37	2	85097546	85097546	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:85097546C>T	uc010ysl.1	-	2	561	c.472G>A	c.(472-474)GGA>AGA	p.G158R	C2orf89_uc002sou.3_Missense_Mutation_p.G158R|C2orf89_uc010fgc.1_Missense_Mutation_p.G158R	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	158	Extracellular (Potential).					integral to membrane				ovary(1)	1						TCCCAGTTTCCGGCAATAGCA	0.562													26	98					0	0	1	0	0
RETSAT	54884	broad.mit.edu	37	2	85577343	85577343	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:85577343G>A	uc002spd.2	-	4	810	c.619C>T	c.(619-621)CAT>TAT	p.H207Y	RETSAT_uc010fge.2_RNA|RETSAT_uc010ysm.1_Missense_Mutation_p.H146Y|RETSAT_uc010fgf.2_Intron	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	207					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	AGGATGGCATGAGGGGCTCCA	0.562													14	59					0	0	1	0	0
GNLY	10578	broad.mit.edu	37	2	85921566	85921566	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:85921566C>T	uc002sql.3	+	1	153	c.25C>T	c.(25-27)CTT>TTT	p.L9F	GNLY_uc010fgp.2_5'UTR|GNLY_uc010ysx.1_Missense_Mutation_p.L9F	NM_006433	NP_006424	P22749	GNLY_HUMAN	granulysin isoform NKG5	9					cellular defense response|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0						CCTCCTGCTCCTTGCAGCCAT	0.617													25	56					0	0	1	0	0
GNLY	10578	broad.mit.edu	37	2	85922478	85922478	+	Missense_Mutation	SNP	G	A	A	rs149497301		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:85922478G>A	uc002sql.3	+	2	216	c.88G>A	c.(88-90)GAC>AAC	p.D30N	GNLY_uc010fgp.2_Missense_Mutation_p.D15N|GNLY_uc010ysx.1_Missense_Mutation_p.D57N	NM_006433	NP_006424	P22749	GNLY_HUMAN	granulysin isoform NKG5	30					cellular defense response|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0						TGAGTACTACGACCTGGCAAG	0.622													16	30					0	0	1	0	0
GNLY	10578	broad.mit.edu	37	2	85924772	85924772	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:85924772G>A	uc002sql.3	+	4	527	c.399G>A	c.(397-399)GAG>GAA	p.E133E	GNLY_uc010fgp.2_Silent_p.E118E|GNLY_uc010ysx.1_Silent_p.E160E	NM_006433	NP_006424	P22749	GNLY_HUMAN	granulysin isoform NKG5	133	Saposin B-type.				cellular defense response|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0						AGATCTGTGAGGACCTCAGGT	0.542													4	45					0	0	1	0	0
POLR1A	25885	broad.mit.edu	37	2	86258507	86258507	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:86258507G>A	uc002sqs.2	-	30	4903	c.4524C>T	c.(4522-4524)ATC>ATT	p.I1508I	POLR1A_uc010ytb.1_Silent_p.I874I	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	1508					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						TGAACGGGTGGATCTCACGCA	0.677													62	155					0	0	1	0	0
POLR1A	25885	broad.mit.edu	37	2	86327250	86327250	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:86327250G>A	uc002sqs.2	-	2	502	c.123C>T	c.(121-123)AGC>AGT	p.S41S	POLR1A_uc002sqv.2_Silent_p.S41S	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	41					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						GGTTCCCCAGGCTGTCCAGGT	0.483													25	63					0	0	1	0	0
KDM3A	55818	broad.mit.edu	37	2	86678279	86678279	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:86678279C>T	uc002sri.3	+	4	723	c.396C>T	c.(394-396)CGC>CGT	p.R132R	KDM3A_uc010ytj.1_Silent_p.R132R|KDM3A_uc010ytk.1_Silent_p.R80R	NM_018433	NP_060903	Q9Y4C1	KDM3A_HUMAN	jumonji domain containing 1A	132					androgen receptor signaling pathway|cell differentiation|formaldehyde biosynthetic process|histone H3-K9 demethylation|hormone-mediated signaling pathway|positive regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	5						CTTCTGTTCGCTTTCTGGGAG	0.358													30	72					0	0	1	0	0
RMND5A	64795	broad.mit.edu	37	2	86980590	86980590	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:86980590C>T	uc010ytm.1	+	4	807	c.430C>T	c.(430-432)CTT>TTT	p.L144F	RMND5A_uc002srs.3_Intron|RMND5A_uc002srr.2_Missense_Mutation_p.L144F	NM_022780	NP_073617	Q9H871	RMD5A_HUMAN	required for meiotic nuclear division 5 homolog	144	LisH.									ovary(1)|skin(1)	2						GGAATCTGGTCTTTCTGTAGA	0.373													45	96					0	0	1	0	0
CD8A	925	broad.mit.edu	37	2	87013055	87013055	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:87013055C>T	uc002srt.2	-	6	1585	c.696G>A	c.(694-696)GCG>GCA	p.A232A	RMND5A_uc002srs.3_Intron|CD8A_uc002srv.2_Silent_p.A232A|CD8A_uc010ytn.1_Silent_p.A273A|CD8A_uc002sru.2_Silent_p.A195A	NM_001768	NP_001759	P01732	CD8A_HUMAN	CD8 antigen alpha polypeptide isoform 1	232	Cytoplasmic (Potential).				antigen processing and presentation|regulation of immune response|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane|T cell receptor complex	coreceptor activity|MHC class I protein binding			ovary(1)	1						AGACGTATCTCGCCGAAAGGC	0.507													60	168					0	0	1	0	0
CD8B	926	broad.mit.edu	37	2	87085384	87085384	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:87085384G>A	uc002srz.2	-	2	249	c.199C>T	c.(199-201)CAC>TAC	p.H67Y	RMND5A_uc002srs.3_Intron|CD8B_uc002srw.2_Missense_Mutation_p.H67Y|CD8B_uc002srx.2_Missense_Mutation_p.H67Y|CD8B_uc002sry.2_Missense_Mutation_p.H67Y|CD8B_uc010fgt.2_Missense_Mutation_p.H67Y|CD8B_uc002ssa.2_Missense_Mutation_p.H67Y|CD8B_uc010yto.1_Missense_Mutation_p.H67Y	NM_004931	NP_004922	P10966	CD8B_HUMAN	CD8b antigen isoform 5 precursor	67	Ig-like V-type.|Extracellular (Potential).				immune response|regulation of defense response to virus by virus|regulation of immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway|viral reproduction	early endosome|extracellular region|integral to plasma membrane|T cell receptor complex	coreceptor activity|MHC class I protein binding			upper_aerodigestive_tract(1)|skin(1)	2						AGGAACTCGTGGTGACTGTCA	0.547													7	89					0	0	1	0	0
SMYD1	150572	broad.mit.edu	37	2	88367436	88367436	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:88367436G>A	uc002ssr.2	+	1	55	c.53G>A	c.(52-54)GGA>GAA	p.G18E	SMYD1_uc002ssq.1_Missense_Mutation_p.G13E	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	18					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						GAGGGCAAAGGAAGGGGTCTG	0.522													68	147					0	0	1	0	0
SMYD1	150572	broad.mit.edu	37	2	88387520	88387520	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:88387520G>A	uc002ssr.2	+	3	456	c.454G>A	c.(454-456)GAC>AAC	p.D152N	SMYD1_uc002ssq.1_Intron	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	152	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						GGTGGACGTGGACACATTCTT	0.622													18	61					0	0	1	0	0
SMYD1	150572	broad.mit.edu	37	2	88402646	88402646	+	Missense_Mutation	SNP	C	T	T	rs146646005		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:88402646C>T	uc002ssr.2	+	7	960	c.958C>T	c.(958-960)CGT>TGT	p.R320C	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Missense_Mutation_p.R16C	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	320					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AGACAAGGCTCGTTCCGAGGG	0.463													21	35					0	0	1	0	0
THNSL2	55258	broad.mit.edu	37	2	88474181	88474181	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:88474181A>G	uc002ssz.3	+	3	400	c.247A>G	c.(247-249)AGA>GGA	p.R83G	THNSL2_uc002ssv.2_RNA|THNSL2_uc002ssw.3_Missense_Mutation_p.R83G|THNSL2_uc002ssx.3_Missense_Mutation_p.R51G|THNSL2_uc002sta.3_Intron|THNSL2_uc002ssy.3_Missense_Mutation_p.R83G|THNSL2_uc010fhe.2_5'UTR	NM_018271	NP_060741	Q86YJ6	THNS2_HUMAN	threonine synthase-like 2	83					threonine biosynthetic process		threonine synthase activity			ovary(1)	1						AGCCTTCAGCAGATTCCGTCA	0.517													33	85					0	0	1	0	0
THNSL2	55258	broad.mit.edu	37	2	88482261	88482261	+	Silent	SNP	C	T	T	rs148640386		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:88482261C>T	uc002ssz.3	+	6	999	c.846C>T	c.(844-846)GTC>GTT	p.V282V	THNSL2_uc002ssv.2_RNA|THNSL2_uc002ssw.3_Silent_p.V282V|THNSL2_uc002ssx.3_Intron|THNSL2_uc002sta.3_Silent_p.V124V|THNSL2_uc002ssy.3_Silent_p.V282V|THNSL2_uc010fhe.2_Silent_p.V124V	NM_018271	NP_060741	Q86YJ6	THNS2_HUMAN	threonine synthase-like 2	282					threonine biosynthetic process		threonine synthase activity			ovary(1)	1						TCCGTCTGGTCGTGGCAGTGA	0.423													15	63					0	0	1	0	0
THNSL2	55258	broad.mit.edu	37	2	88485422	88485422	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:88485422C>T	uc002ssz.3	+	9	1388	c.1235C>T	c.(1234-1236)CCC>CTC	p.P412L	THNSL2_uc002ssv.2_Intron|THNSL2_uc002ssw.3_3'UTR|THNSL2_uc002ssx.3_Missense_Mutation_p.P238S|THNSL2_uc002sta.3_Silent_p.S203S|THNSL2_uc002ssy.3_Missense_Mutation_p.P412L|THNSL2_uc010fhe.2_Silent_p.S203S	NM_018271	NP_060741	Q86YJ6	THNS2_HUMAN	threonine synthase-like 2	412					threonine biosynthetic process		threonine synthase activity			ovary(1)	1						CACAGCACTCCCCGGTGCTGC	0.617													4	9					0	0	1	0	0
C2orf51	200523	broad.mit.edu	37	2	88825180	88825180	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:88825180C>T	uc002stb.1	+	2	160	c.18C>T	c.(16-18)TAC>TAT	p.Y6Y		NM_152670	NP_689883	Q96LM6	TSC21_HUMAN	chromosome 2 open reading frame 51	6						nucleus				skin(1)	1						GTGTGAAATACCCGGGACAGG	0.547													59	155					0	0	1	0	0
C2orf51	200523	broad.mit.edu	37	2	88828854	88828854	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:88828854C>T	uc002stb.1	+	4	547	c.405C>T	c.(403-405)CTC>CTT	p.L135L		NM_152670	NP_689883	Q96LM6	TSC21_HUMAN	chromosome 2 open reading frame 51	135						nucleus				skin(1)	1						TTCCGTGCCTCGTGGATCCCA	0.572													29	62					0	0	1	0	0
FLJ40330	645784	broad.mit.edu	37	2	89100768	89100768	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89100768G>A	uc010fhg.2	+	13		c.1208G>A			FLJ40330_uc010fhh.2_RNA|FLJ40330_uc010fhi.1_RNA	NR_015424				Homo sapiens mRNA; cDNA DKFZp434J1630 (from clone DKFZp434J1630).												0						TAAATGAATTGAATCATTTGA	0.333													22	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89156784	89156784	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89156784G>A	uc002sti.1	-	1		c.3491C>T			uc002stj.1_RNA					Homo sapiens cDNA FLJ46682 fis, clone TRACH3011082, moderately similar to Ig kappa chain V-III region HAH precursor.																		ACCGCAATAGGGGTAGGTCCC	0.522													4	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89157152	89157152	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89157152C>T	uc010ytr.1	-	243		c.9773G>A			uc002sti.1_RNA|uc002stj.1_RNA					Parts of antibodies, mostly variable regions.																		TTCAACTGCTCATCAGATGGC	0.488													6	12					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89160099	89160099	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89160099C>T	uc010ytr.1	-	239		c.9691G>A			uc002sti.1_RNA|uc002stj.1_Intron					Parts of antibodies, mostly variable regions.																		CCAGTCGTGTCCCTTGGCCGA	0.383													23	54					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89265922	89265922	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89265922G>A	uc010ytr.1	-	95		c.7644C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ATGCAGCATAGATCAGGAGCT	0.517													104	198					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89265995	89265995	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89265995C>T	uc010ytr.1	-	95		c.7571G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CTGACTTGCCCGGCAAGTGAT	0.502													59	202					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89266222	89266222	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89266222G>A	uc010ytr.1	-	94		c.7470C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGAGCAGCAGGAGCCCCAGGA	0.557													54	179					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89266243	89266243	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89266243G>A	uc010ytr.1	-	94		c.7449C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCTGAGCGGGGACCCTCATGT	0.577													35	183					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89291972	89291972	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89291972C>T	uc010ytr.1	-	82		c.7234G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCAAAATCTTCAGACTGCAGG	0.478													66	189					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89416832	89416832	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89416832G>A	uc010ytr.1	-	42		c.4770C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AACACTGTGGGAGGGTAACTA	0.522													31	110					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89476608	89476608	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89476608G>A	uc010ytr.1	-	27		c.3316C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TGAGCAAGGAGCCTCATTGTG	0.552													4	27					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89495564	89495565	+	Splice_Site	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89495564_89495565GG>AA	uc010ytr.1	-	25		c.3296_splice	c.e25+1		uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TAGCACTGTGGGAGGATCTTGT	0.53													8	56					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89495808	89495808	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:89495808G>A	uc010ytr.1	-	25		c.3053C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCAGGACATGGAGGCCTGCTC	0.483													12	17					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90007990	90007991	+	RNA	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:90007990_90007991GG>AA	uc010fhm.2	+	8		c.1163_1164GG>AA								Parts of antibodies, mostly variable regions.																		CAGAAACCAGGGAAAGTTCCTA	0.525													38	91					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90139096	90139096	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:90139096G>A	uc010fhm.2	+	17		c.2008G>A								Parts of antibodies, mostly variable regions.																		GACCCAGTCAGGACACAGCAT	0.547													46	191					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90139396	90139396	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:90139396C>T	uc010fhm.2	+	18		c.2189C>T								Parts of antibodies, mostly variable regions.																		AGCTGGTTAGCCTGGTATCAG	0.527													55	164					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90139424	90139424	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:90139424C>T	uc010fhm.2	+	18		c.2217C>T								Parts of antibodies, mostly variable regions.																		CAGAGAAAGCCCCTAAGTCCC	0.522													43	231					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90212209	90212209	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:90212209G>A	uc010fhm.2	+	26		c.3633G>A								Parts of antibodies, mostly variable regions.																		CCTAGAGCCTGAAGATTTTGC	0.502													39	72					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90249169	90249169	+	RNA	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:90249169C>A	uc010fhm.2	+	28		c.3712C>A								Parts of antibodies, mostly variable regions.																		GACAGAGTCACCATCACTTGC	0.473													45	188					4.75955e-12	4.77822e-12	1	1	0
Unknown	0	broad.mit.edu	37	2	90249396	90249396	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:90249396C>T	uc010fhm.2	+	28		c.3939C>T								Parts of antibodies, mostly variable regions.																		TAGTACCCCTCCCACAGTGTT	0.522													58	166					0	0	1	0	0
GGT8P	645367	broad.mit.edu	37	2	91968524	91968524	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:91968524C>T	uc010fho.1	+	2		c.855C>T				NR_003503				Homo sapiens cDNA FLJ31276 fis, clone KIDNE2006376, weakly similar to GAMMA-GLUTAMYLTRANSPEPTIDASE 1 PRECURSOR (EC 2.3.2.2).												0						CTCGCCTCTTCCAGCCCAGCA	0.677													17	24					0	0	1	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95480886	95480886	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:95480886C>T	uc010fhq.1	-	2	1494	c.1102G>A	c.(1102-1104)GAA>AAA	p.E368K	ANKRD20B_uc010fhp.2_RNA	NM_001012421	NP_001012421			ankyrin repeat domain 20 family, member A2												0						TGATCACATTCATTCATTAGC	0.323													40	116					0	0	1	0	0
TEKT4	150483	broad.mit.edu	37	2	95540633	95540633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:95540633G>A	uc002stw.1	+	4	919	c.826G>A	c.(826-828)GAC>AAC	p.D276N	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	276					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						CATCCTTCGCGACACCTCCGA	0.687													3	15					0	0	1	0	0
TEKT4	150483	broad.mit.edu	37	2	95540699	95540699	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:95540699G>A	uc002stw.1	+	4	985	c.892G>A	c.(892-894)GAG>AAG	p.E298K	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	298					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						CCGCTGTGAGGAGCTGGAGGA	0.682													7	19					0	0	1	0	0
ZNF2	7549	broad.mit.edu	37	2	95847020	95847020	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:95847020C>T	uc002suf.2	+	5	909	c.447C>T	c.(445-447)TCC>TCT	p.S149S	ZNF2_uc002sug.2_Silent_p.S107S|ZNF2_uc010yue.1_Silent_p.S111S|ZNF2_uc010fhs.2_Silent_p.S69S	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	149					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		GTAAGAAATCCCTCTCCCGGG	0.522													26	78					0	0	1	0	0
ZNF2	7549	broad.mit.edu	37	2	95847143	95847143	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:95847143C>T	uc002suf.2	+	6	1029	c.567C>T	c.(565-567)ACC>ACT	p.T189T	ZNF2_uc002sug.2_Silent_p.T147T|ZNF2_uc010yue.1_Silent_p.T152T|ZNF2_uc010fhs.2_Silent_p.T110T	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	189	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		CATCCCTCACCCGCCATCAGA	0.572													22	94					0	0	1	0	0
ZNF2	7549	broad.mit.edu	37	2	95847290	95847290	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:95847290C>T	uc002suf.2	+	6	1176	c.714C>T	c.(712-714)TTC>TTT	p.F238F	ZNF2_uc002sug.2_Silent_p.F196F|ZNF2_uc010yue.1_Silent_p.F201F|ZNF2_uc010fhs.2_Silent_p.F159F	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	238	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		CAAAAGCCTTCTTTGACCGTT	0.522													16	131					0	0	1	0	0
PROM2	150696	broad.mit.edu	37	2	95941690	95941690	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:95941690G>A	uc002suh.1	+	3	440	c.307G>A	c.(307-309)GAG>AAG	p.E103K	PROM2_uc002sui.2_Missense_Mutation_p.E103K|PROM2_uc002suj.2_5'UTR|PROM2_uc002suk.2_Missense_Mutation_p.E103K|PROM2_uc002sul.2_5'UTR	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	103	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						GGTGCGGTACGAGGCGGGCTA	0.687													4	12					0	0	1	0	0
PROM2	150696	broad.mit.edu	37	2	95947690	95947690	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:95947690G>A	uc002suh.1	+	13	1702	c.1569G>A	c.(1567-1569)GGG>GGA	p.G523G	PROM2_uc002sui.2_Silent_p.G523G|PROM2_uc002suj.2_Silent_p.G177G|PROM2_uc002suk.2_Silent_p.G523G|PROM2_uc002sul.2_Silent_p.G49G|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	523	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						ACACCCCAGGGAACCTGCCCC	0.627													8	113					0	0	1	0	0
PROM2	150696	broad.mit.edu	37	2	95947900	95947900	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:95947900G>A	uc002suh.1	+	14	1787	c.1654G>A	c.(1654-1656)GAA>AAA	p.E552K	PROM2_uc002sui.2_Missense_Mutation_p.E552K|PROM2_uc002suj.2_Missense_Mutation_p.E206K|PROM2_uc002suk.2_Missense_Mutation_p.E552K|PROM2_uc002sul.2_Missense_Mutation_p.E78K|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	552	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						GCAGTGCAAGGAAGGGGCAGC	0.612													9	24					0	0	1	0	0
KCNIP3	30818	broad.mit.edu	37	2	96040113	96040113	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96040113C>T	uc002sup.2	+	3	366	c.251C>T	c.(250-252)GCC>GTC	p.A84V	KCNIP3_uc002suq.2_Missense_Mutation_p.A58V	NM_013434	NP_038462	Q9Y2W7	CSEN_HUMAN	Kv channel interacting protein 3 isoform 1	84	EF-hand 1; degenerate.				apoptosis|signal transduction|transcription, DNA-dependent	endoplasmic reticulum|Golgi apparatus|nucleus|plasma membrane	calcium ion binding|DNA binding|potassium channel activity|transcription corepressor activity|voltage-gated ion channel activity			breast(2)|ovary(1)	3				READ - Rectum adenocarcinoma(193;0.13)		CAGCTGCAGGCCCAGACCAAG	0.602													16	58					0	0	1	0	0
GPAT2	150763	broad.mit.edu	37	2	96691678	96691678	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96691678C>T	uc002svf.2	-	12	1461	c.1238G>A	c.(1237-1239)TGT>TAT	p.C413Y	GPAT2_uc002svd.2_Missense_Mutation_p.C226Y|GPAT2_uc002sve.2_Missense_Mutation_p.C215Y|GPAT2_uc002svg.2_Missense_Mutation_p.C286Y|GPAT2_uc010yuh.1_Missense_Mutation_p.C342Y|GPAT2_uc002svh.2_Missense_Mutation_p.C413Y	NM_207328	NP_997211	Q6NUI2	GPAT2_HUMAN	glycerol-3-phosphate acyltransferase 2,	413					glycerol-3-phosphate metabolic process|phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity				0						GTGCCCCTACCATTGGCCCAG	0.607													20	48					0	0	1	0	0
ADRA2B	151	broad.mit.edu	37	2	96780804	96780804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96780804C>T	uc002svi.2	-	3	1094	c.1094G>A	c.(1093-1095)CGG>CAG	p.R365Q		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	365	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	GCGCTTCTCCCGGGTCAGCTG	0.657													6	32					0	0	1	0	0
ASTL	431705	broad.mit.edu	37	2	96789678	96789678	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96789678C>T	uc010yui.1	-	9	1207	c.1207G>A	c.(1207-1209)GGA>AGA	p.G403R		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	403					proteolysis		metalloendopeptidase activity|zinc ion binding				0						GGCTGGATTCCTGCTTCTGAA	0.592													30	67					0	0	1	0	0
ASTL	431705	broad.mit.edu	37	2	96789971	96789971	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96789971G>A	uc010yui.1	-	9	914	c.914C>T	c.(913-915)GCC>GTC	p.A305V		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	305					proteolysis		metalloendopeptidase activity|zinc ion binding				0						AGATAGGGAGGCCGGAGCGGG	0.637													11	27					0	0	1	0	0
ASTL	431705	broad.mit.edu	37	2	96795611	96795611	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96795611G>A	uc010yui.1	-	8	826	c.826C>T	c.(826-828)CTC>TTC	p.L276F		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	276					proteolysis		metalloendopeptidase activity|zinc ion binding				0						TAGAGTTTGAGGACCCGGGTG	0.647													9	70					0	0	1	0	0
STARD7	56910	broad.mit.edu	37	2	96859059	96859059	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96859059G>A	uc002svm.3	-	4	982	c.581C>T	c.(580-582)GCC>GTC	p.A194V	STARD7_uc002svl.2_5'UTR	NM_020151	NP_064536	Q9NQZ5	STAR7_HUMAN	START domain containing 7 precursor	194	START.					mitochondrion					0						GATTACCAGGGCATCCCATTT	0.423													48	98					0	0	1	0	0
SNRNP200	23020	broad.mit.edu	37	2	96952164	96952165	+	Missense_Mutation	DNP	GG	AA	AA	rs143175658		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96952164_96952165GG>AA	uc002svu.2	-	29	3973_3974	c.3887_3888CC>TT	c.(3886-3888)CCC>CTT	p.P1296L	SNRNP200_uc002svt.2_5'Flank|SNRNP200_uc010yuj.1_5'Flank|SNRNP200_uc002svv.1_5'Flank|SNRNP200_uc002svw.1_Missense_Mutation_p.P368L	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1296						catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CGGTTGGAGGGGGGTACTTCTC	0.5													32	101					0	0	1	0	0
SNRNP200	23020	broad.mit.edu	37	2	96961310	96961310	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96961310G>A	uc002svu.2	-	14	1844	c.1758C>T	c.(1756-1758)ATC>ATT	p.I586I		NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	586	Helicase ATP-binding 1.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						GGGTGCAGACGATGATCTGAG	0.572													18	49					0	0	1	0	0
ITPRIPL1	150771	broad.mit.edu	37	2	96992898	96992898	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:96992898C>T	uc002svx.2	+	3	864	c.529C>T	c.(529-531)CAA>TAA	p.Q177*	ITPRIPL1_uc010yuk.1_Nonsense_Mutation_p.Q169*|ITPRIPL1_uc002svy.2_Nonsense_Mutation_p.Q185*|ITPRIPL1_uc010yul.1_Nonsense_Mutation_p.Q169*	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	177	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(2)|ovary(1)	3						ACACTATGTCCAAAATGCCAT	0.547													49	129					0	0	1	0	0
NCAPH	23397	broad.mit.edu	37	2	97033013	97033013	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97033013C>T	uc002svz.1	+	15	1984	c.1900C>T	c.(1900-1902)CAC>TAC	p.H634Y	NCAPH_uc010yum.1_Missense_Mutation_p.H610Y|NCAPH_uc010fhw.1_Missense_Mutation_p.H623Y|NCAPH_uc010yun.1_Missense_Mutation_p.H498Y|NCAPH_uc002swa.1_Missense_Mutation_p.H229Y	NM_015341	NP_056156	Q15003	CND2_HUMAN	non-SMC condensin I complex, subunit H	634					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|microtubule cytoskeleton|nucleus				urinary_tract(1)|skin(1)	2		Ovarian(717;0.0221)				AATTGAAATTCACTATGCCAA	0.388													35	87					0	0	1	0	0
LMAN2L	81562	broad.mit.edu	37	2	97373078	97373078	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97373078G>A	uc002swu.2	-	8	998	c.962C>T	c.(961-963)TCC>TTC	p.S321F	LMAN2L_uc002swv.2_Missense_Mutation_p.S332F|LMAN2L_uc010yut.1_Missense_Mutation_p.S187F|LMAN2L_uc010yuu.1_Missense_Mutation_p.S185F|LMAN2L_uc010yuv.1_Missense_Mutation_p.S174F|LMAN2L_uc010yuw.1_Missense_Mutation_p.S176F|LMAN2L_uc002sww.2_Missense_Mutation_p.S174F|LMAN2L_uc010yux.1_Missense_Mutation_p.S176F	NM_030805	NP_110432	Q9H0V9	LMA2L_HUMAN	lectin, mannose-binding 2-like isoform 2	321	Helical; (Potential).				ER to Golgi vesicle-mediated transport|protein folding|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle|Golgi membrane|integral to membrane	mannose binding|metal ion binding				0						AAACACCAGGGAGAAAAAGAC	0.522													19	35					0	0	1	0	0
LMAN2L	81562	broad.mit.edu	37	2	97377690	97377690	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97377690G>A	uc002swu.2	-	5	616	c.580C>T	c.(580-582)CCT>TCT	p.P194S	LMAN2L_uc002swv.2_Missense_Mutation_p.P205S|LMAN2L_uc010yut.1_Missense_Mutation_p.P60S|LMAN2L_uc010yuu.1_Missense_Mutation_p.P58S|LMAN2L_uc010yuv.1_Missense_Mutation_p.P47S|LMAN2L_uc010yuw.1_Missense_Mutation_p.P49S|LMAN2L_uc002sww.2_Missense_Mutation_p.P47S|LMAN2L_uc010yux.1_Missense_Mutation_p.P49S	NM_030805	NP_110432	Q9H0V9	LMA2L_HUMAN	lectin, mannose-binding 2-like isoform 2	194	L-type lectin-like.|Lumenal (Potential).				ER to Golgi vesicle-mediated transport|protein folding|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle|Golgi membrane|integral to membrane	mannose binding|metal ion binding				0						AGCTCTGTAGGCCGCCCATCC	0.557													23	49					0	0	1	0	0
CNNM4	26504	broad.mit.edu	37	2	97426937	97426937	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97426937C>T	uc002swx.2	+	1	299	c.201C>T	c.(199-201)TTC>TTT	p.F67F		NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	67					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						GCATCATCTTCGTGTCCGAGG	0.647													16	47					0	0	1	0	0
CNNM4	26504	broad.mit.edu	37	2	97427263	97427263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97427263C>T	uc002swx.2	+	1	625	c.527C>T	c.(526-528)CCT>CTT	p.P176L		NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	176					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						GTGGAGGAGCCTGGGAGGTTC	0.602													110	257					0	0	1	0	0
CNNM4	26504	broad.mit.edu	37	2	97464925	97464925	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97464925C>T	uc002swx.2	+	4	1911	c.1813C>T	c.(1813-1815)CGA>TGA	p.R605*	CNNM4_uc010yuy.1_Nonsense_Mutation_p.R92*	NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	605					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						CCTGTACACCCGAAATAAGCC	0.577													21	79					0	0	1	0	0
CNNM4	26504	broad.mit.edu	37	2	97475240	97475240	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97475240G>A	uc002swx.2	+	7	2412	c.2314G>A	c.(2314-2316)GAG>AAG	p.E772K	CNNM4_uc010yuy.1_3'UTR	NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	772					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						AGCCTCCCACGAGAATGCCAT	0.612													14	28					0	0	1	0	0
CNNM3	26505	broad.mit.edu	37	2	97494389	97494389	+	Nonsense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97494389T>G	uc002swy.2	+	6	1896	c.1872T>G	c.(1870-1872)TAT>TAG	p.Y624*	CNNM3_uc002swz.2_Nonsense_Mutation_p.Y576*	NM_017623	NP_060093	Q8NE01	CNNM3_HUMAN	cyclin M3 isoform 1	624					ion transport	integral to membrane|plasma membrane	protein binding			ovary(1)	1						CATCTGCGTATTGTCCCGACT	0.592													23	35					0	0	1	0	0
SEMA4C	54910	broad.mit.edu	37	2	97527334	97527334	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97527334G>A	uc002sxh.3	-	14	1814	c.1654C>T	c.(1654-1656)CTC>TTC	p.L552F	SEMA4C_uc002sxf.3_Missense_Mutation_p.L52F|SEMA4C_uc002sxe.2_Missense_Mutation_p.L52F|SEMA4C_uc002sxg.3_Missense_Mutation_p.L605F	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	552	Extracellular (Potential).				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						CTGCCACGGAGGTTGCAGATG	0.562													28	130					0	0	1	0	0
SEMA4C	54910	broad.mit.edu	37	2	97527522	97527522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97527522G>A	uc002sxh.3	-	13	1713	c.1553C>T	c.(1552-1554)GCC>GTC	p.A518V	SEMA4C_uc002sxf.3_Missense_Mutation_p.A18V|SEMA4C_uc002sxe.2_Missense_Mutation_p.A18V|SEMA4C_uc002sxg.3_Missense_Mutation_p.A571V	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	518	PSI.|Extracellular (Potential).				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						GACGCTCCAGGCGCAATAGGG	0.647													17	64					0	0	1	0	0
FAHD2B	151313	broad.mit.edu	37	2	97757237	97757237	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97757237G>A	uc002sxm.2	-	2	358	c.207C>T	c.(205-207)TTC>TTT	p.F69F		NM_199336	NP_955368	Q6P2I3	FAH2B_HUMAN	fumarylacetoacetate hydrolase domain containing	69							hydrolase activity|metal ion binding				0						CCTGCTCTAGGAACTGCGTCA	0.607													17	55					0	0	1	0	0
ANKRD36	375248	broad.mit.edu	37	2	97810277	97810277	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97810277C>T	uc010yva.1	+	9	1168	c.924C>T	c.(922-924)GCC>GCT	p.A308A	ANKRD36_uc010yuz.1_RNA|ANKRD36_uc010fic.2_Silent_p.A27A|ANKRD36_uc002sxo.2_Intron|ANKRD36_uc002sxp.3_RNA	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	308											0						AACAACCGGCCTTGAAGGTAT	0.318													9	29					0	0	1	0	0
ANKRD36	375248	broad.mit.edu	37	2	97852938	97852938	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:97852938C>T	uc010yva.1	+	31	2289	c.2045C>T	c.(2044-2046)TCT>TTT	p.S682F	ANKRD36_uc010fic.2_Missense_Mutation_p.S401F|ANKRD36_uc002sxo.2_Intron|ANKRD36_uc002sxp.3_RNA|ANKRD36_uc002sxq.1_Intron	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	682											0						TTTTCAGTGTCTTCTCAGAAA	0.323													12	47					0	0	1	0	0
ZAP70	7535	broad.mit.edu	37	2	98351054	98351054	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98351054G>A	uc002syd.1	+	9	1168	c.961G>A	c.(961-963)GAC>AAC	p.D321N	ZAP70_uc010yvf.1_3'UTR|ZAP70_uc002sye.1_Missense_Mutation_p.D211N|ZAP70_uc002syf.1_Missense_Mutation_p.D14N	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	321	Interdomain B.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						CCCCTACAGCGACCCAGAGGA	0.587													26	76					0	0	1	0	0
ZAP70	7535	broad.mit.edu	37	2	98351872	98351872	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98351872G>A	uc002syd.1	+	10	1449	c.1242G>A	c.(1240-1242)ATG>ATA	p.M414I	ZAP70_uc010yvf.1_3'UTR|ZAP70_uc002sye.1_Missense_Mutation_p.M304I|ZAP70_uc002syf.1_Missense_Mutation_p.M107I	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	414	Protein kinase.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						TGCTGGTCATGGAGATGGCTG	0.677													24	152					0	0	1	0	0
TMEM131	23505	broad.mit.edu	37	2	98378568	98378568	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98378568G>A	uc002syh.3	-	36	5048	c.4819C>T	c.(4819-4821)CCC>TCC	p.P1607S	TMEM131_uc002syg.2_5'Flank	NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1607						integral to membrane				ovary(4)|central_nervous_system(2)	6						GCAGCTGGGGGAGACGGGGAA	0.557													17	36					0	0	1	0	0
TMEM131	23505	broad.mit.edu	37	2	98413354	98413354	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98413354G>A	uc002syh.3	-	27	3195	c.2966C>T	c.(2965-2967)TCC>TTC	p.S989F		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	989						integral to membrane				ovary(4)|central_nervous_system(2)	6						AAAGCGTAAGGAGCTTCCTGG	0.423													23	56					0	0	1	0	0
TMEM131	23505	broad.mit.edu	37	2	98421634	98421634	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98421634C>T	uc002syh.3	-	22	2548	c.2319G>A	c.(2317-2319)CAG>CAA	p.Q773Q		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	773						integral to membrane				ovary(4)|central_nervous_system(2)	6						ACATATCTTCCTGCATGGCTA	0.408													6	30					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98744710	98744710	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98744710C>T	uc002syo.2	+	6	975	c.711C>T	c.(709-711)TCC>TCT	p.S237S	VWA3B_uc010yvh.1_Silent_p.S87S|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Silent_p.S237S|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	237										ovary(3)|large_intestine(2)|skin(1)	6						AGATTGAATCCATTTACTACT	0.478													45	125					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98744738	98744738	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98744738C>T	uc002syo.2	+	6	1003	c.739C>T	c.(739-741)CCT>TCT	p.P247S	VWA3B_uc010yvh.1_Missense_Mutation_p.P97S|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Missense_Mutation_p.P247S|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	247										ovary(3)|large_intestine(2)|skin(1)	6						GGGGGATGTTCCTGAAGAATC	0.498													47	108					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98866842	98866842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98866842G>A	uc002syo.2	+	20	2999	c.2735G>A	c.(2734-2736)GGA>GAA	p.G912E	VWA3B_uc002sym.2_Missense_Mutation_p.G912E|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.G569E|VWA3B_uc002syp.1_Missense_Mutation_p.G304E|VWA3B_uc002syq.1_Missense_Mutation_p.G188E|VWA3B_uc002syr.1_Missense_Mutation_p.G229E|VWA3B_uc010fii.1_RNA|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	912										ovary(3)|large_intestine(2)|skin(1)	6						AACCCCCAAGGAGCCAAACTC	0.408													30	86					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98916675	98916675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98916675G>A	uc002syo.2	+	25	3680	c.3416G>A	c.(3415-3417)CGG>CAG	p.R1139Q	VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.R796Q|VWA3B_uc002syp.1_Missense_Mutation_p.R531Q|VWA3B_uc002syq.1_Missense_Mutation_p.R415Q|VWA3B_uc002syr.1_Missense_Mutation_p.R456Q|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1139										ovary(3)|large_intestine(2)|skin(1)	6						TGTAACAACCGGAGAGTAAGT	0.448													44	105					0	0	1	0	0
CNGA3	1261	broad.mit.edu	37	2	98996696	98996696	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:98996696G>A	uc002syt.2	+	4	691	c.274G>A	c.(274-276)GAC>AAC	p.D92N	CNGA3_uc002syu.2_Missense_Mutation_p.D92N|CNGA3_uc010fij.2_Missense_Mutation_p.D96N	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	92					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GCACCACCAGGACCAGGGACC	0.592													32	96					0	0	1	0	0
CNGA3	1261	broad.mit.edu	37	2	99013055	99013055	+	Silent	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99013055G>C	uc002syt.2	+	8	1839	c.1422G>C	c.(1420-1422)CTG>CTC	p.L474L	CNGA3_uc002syu.2_Silent_p.L456L|CNGA3_uc010fij.2_Silent_p.L478L	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	474					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						ACGTGCACCTGGACACGCTGA	0.577													5	21					0	0	1	0	0
CNGA3	1261	broad.mit.edu	37	2	99013074	99013074	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99013074C>T	uc002syt.2	+	8	1858	c.1441C>T	c.(1441-1443)CGC>TGC	p.R481C	CNGA3_uc002syu.2_Missense_Mutation_p.R463C|CNGA3_uc010fij.2_Missense_Mutation_p.R485C	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	481					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GAAGAAGGTTCGCATCTTCCA	0.567													13	22					0	0	1	0	0
INPP4A	3631	broad.mit.edu	37	2	99170840	99170840	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99170840C>T	uc002syy.2	+	16	1862	c.1469C>T	c.(1468-1470)TCG>TTG	p.S490L	INPP4A_uc010yvj.1_Missense_Mutation_p.S490L|INPP4A_uc010yvk.1_Missense_Mutation_p.S490L|INPP4A_uc002syx.2_Missense_Mutation_p.S485L|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	490					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						TCTCCCACTTCGACTGAGGAG	0.602													9	20					0	0	1	0	0
INPP4A	3631	broad.mit.edu	37	2	99182197	99182197	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99182197C>T	uc002syy.2	+	21	2655	c.2262C>T	c.(2260-2262)TCC>TCT	p.S754S	INPP4A_uc010yvj.1_Silent_p.S715S|INPP4A_uc010yvk.1_Silent_p.S715S|INPP4A_uc002syx.2_Silent_p.S749S|INPP4A_uc010fik.2_Silent_p.S83S	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	754					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						CCAGCGCCTCCGCAGACATGC	0.517													7	85					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99438647	99438647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99438647C>T	uc002szf.1	-	7	2383	c.2089G>A	c.(2089-2091)GAT>AAT	p.D697N		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	697											0						GAGGCGCCATCCCTGTATTTG	0.637													4	21					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99438711	99438711	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99438711C>T	uc002szf.1	-	7	2319	c.2025G>A	c.(2023-2025)CCG>CCA	p.P675P		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	675											0						TGTCCTCACTCGGGGCCGGCT	0.711													8	12					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99438729	99438729	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99438729G>A	uc002szf.1	-	7	2301	c.2007C>T	c.(2005-2007)GCC>GCT	p.A669A		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	669											0						GCTCCTGGGCGGCTGGGCAGG	0.736													3	17					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99439325	99439325	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99439325C>T	uc002szf.1	-	7	1705	c.1411G>A	c.(1411-1413)GGA>AGA	p.G471R		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	471	Pro-rich.										0						GTCCCCGCTCCTCTCTCGGGC	0.557													13	34					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99439351	99439351	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99439351C>T	uc002szf.1	-	7	1679	c.1385G>A	c.(1384-1386)AGA>AAA	p.R462K		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	462	Pro-rich.										0						CTCCGCTTCTCTCTCGGGCTC	0.607													11	45					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99439496	99439496	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99439496G>A	uc002szf.1	-	7	1534	c.1240C>T	c.(1240-1242)CCC>TCC	p.P414S		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	414	Pro-rich.										0						TCAGTCTCGGGGGGAGTCGTG	0.721													6	14					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99448865	99448865	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99448865C>T	uc002szf.1	-	5	780	c.486G>A	c.(484-486)AGG>AGA	p.R162R		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	162											0						CTGGGGGGCTCCTGGGCAGCC	0.617													32	68					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99448892	99448892	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99448892C>T	uc002szf.1	-	5	753	c.459G>A	c.(457-459)ATG>ATA	p.M153I		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	153											0						CCTCAGAGCTCATGCCGGCAT	0.572													30	54					0	0	1	0	0
TSGA10	80705	broad.mit.edu	37	2	99634720	99634720	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99634720G>A	uc002szg.3	-	18	2643	c.2015C>T	c.(2014-2016)TCA>TTA	p.S672L	TSGA10_uc002szh.3_Missense_Mutation_p.S672L|TSGA10_uc002szi.3_Missense_Mutation_p.S672L|TSGA10_uc010fin.1_Missense_Mutation_p.S672L	NM_182911	NP_878915	Q9BZW7	TSG10_HUMAN	testis specific, 10	672	Interaction with HIF1A (By similarity).				spermatogenesis	cytoplasm|nuclear membrane				ovary(1)|central_nervous_system(1)	2						ACGTTCTGGTGAATGACATTT	0.418													18	63					0	0	1	0	0
TSGA10	80705	broad.mit.edu	37	2	99725409	99725409	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:99725409G>A	uc002szg.3	-	5	725	c.97C>T	c.(97-99)CGT>TGT	p.R33C	TSGA10_uc002szh.3_Missense_Mutation_p.R33C|TSGA10_uc002szi.3_Missense_Mutation_p.R33C|TSGA10_uc010fin.1_Missense_Mutation_p.R33C|TSGA10_uc010yvn.1_Missense_Mutation_p.R33C	NM_182911	NP_878915	Q9BZW7	TSG10_HUMAN	testis specific, 10	33					spermatogenesis	cytoplasm|nuclear membrane				ovary(1)|central_nervous_system(1)	2						AGTTCTTCACGATCTCTTGTT	0.343													8	41					0	0	1	0	0
REV1	51455	broad.mit.edu	37	2	100055656	100055656	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:100055656G>A	uc002tad.2	-	6	832	c.620C>T	c.(619-621)TCT>TTT	p.S207F	REV1_uc002tac.2_Missense_Mutation_p.S207F|REV1_uc002tae.1_Missense_Mutation_p.S186F	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	207					DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						CCTTCCCGGAGAGGTCTGCTC	0.418								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					11	49					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100210086	100210086	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:100210086G>A	uc002tag.2	-	14	2273	c.2037C>T	c.(2035-2037)TCC>TCT	p.S679S	AFF3_uc002taf.2_Silent_p.S704S|AFF3_uc010fiq.1_Silent_p.S679S|AFF3_uc010yvr.1_Silent_p.S832S|AFF3_uc002tah.1_Silent_p.S704S	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	679	Poly-Ser.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						ACTCCAGGTCGGAGTCCGAGG	0.612													32	109					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100623260	100623260	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:100623260C>T	uc002tag.2	-	6	943	c.707G>A	c.(706-708)AGG>AAG	p.R236K	AFF3_uc002taf.2_Missense_Mutation_p.R261K|AFF3_uc010fiq.1_Missense_Mutation_p.R236K|AFF3_uc010yvr.1_Missense_Mutation_p.R390K|AFF3_uc002tah.1_Missense_Mutation_p.R261K|AFF3_uc010fir.1_Missense_Mutation_p.R313K|AFF3_uc002tai.2_Missense_Mutation_p.R158K	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	236					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GTCCATTGGCCTCACATACGC	0.577													18	48					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100623364	100623364	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:100623364G>A	uc002tag.2	-	6	839	c.603C>T	c.(601-603)GCC>GCT	p.A201A	AFF3_uc002taf.2_Silent_p.A226A|AFF3_uc010fiq.1_Silent_p.A201A|AFF3_uc010yvr.1_Silent_p.A355A|AFF3_uc002tah.1_Silent_p.A226A|AFF3_uc010fir.1_Silent_p.A278A|AFF3_uc002tai.2_Silent_p.A123A	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	201					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TGGCCGCCATGGCAGGTGGCC	0.587													37	85					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100623449	100623449	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:100623449C>T	uc002tag.2	-	6	754	c.518G>A	c.(517-519)GGA>GAA	p.G173E	AFF3_uc002taf.2_Missense_Mutation_p.G198E|AFF3_uc010fiq.1_Missense_Mutation_p.G173E|AFF3_uc010yvr.1_Missense_Mutation_p.G327E|AFF3_uc002tah.1_Missense_Mutation_p.G198E|AFF3_uc010fir.1_Missense_Mutation_p.G250E|AFF3_uc002tai.2_Missense_Mutation_p.G95E	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	173					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						AACACCATCTCCAAGCAAGGT	0.547													17	45					0	0	1	0	0
CHST10	9486	broad.mit.edu	37	2	101012051	101012051	+	Silent	SNP	G	A	A	rs138672369		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:101012051G>A	uc002tam.2	-	6	812	c.453C>T	c.(451-453)ATC>ATT	p.I151I		NM_004854	NP_004845	O43529	CHSTA_HUMAN	HNK-1 sulfotransferase	151	Lumenal (Potential).				carbohydrate biosynthetic process|cell adhesion	Golgi membrane|integral to membrane|membrane fraction				ovary(1)	1						CGTTTTCGGGGATCTCCTCAA	0.522													28	77					0	0	1	0	0
NPAS2	4862	broad.mit.edu	37	2	101598755	101598755	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:101598755C>T	uc002tap.1	+	16	1831	c.1545C>T	c.(1543-1545)ATC>ATT	p.I515I	NPAS2_uc010yvt.1_Silent_p.I580I|NPAS2_uc010fit.1_Silent_p.I93I	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	515					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						GGACGCGGATCCTGCAGGCCA	0.547													4	53					0	0	1	0	0
TBC1D8	11138	broad.mit.edu	37	2	101656712	101656712	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:101656712G>A	uc010fiv.2	-	6	1094	c.963C>T	c.(961-963)TTC>TTT	p.F321F	TBC1D8_uc010yvw.1_Silent_p.F336F|TBC1D8_uc002tau.3_Silent_p.F78F	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	321	GRAM 2.				blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						TGTCAGAGGCGAACATCCGCC	0.582													22	47					0	0	1	0	0
CREG2	200407	broad.mit.edu	37	2	102000095	102000095	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102000095G>A	uc002tba.2	-	2	557	c.511C>T	c.(511-513)CCT>TCT	p.P171S		NM_153836	NP_722578	Q8IUH2	CREG2_HUMAN	cellular repressor of E1A-stimulated genes 2	171						extracellular region	FMN binding			ovary(1)	1						TAGAAGAAAGGAATCCCAGTG	0.517													23	63					0	0	1	0	0
MAP4K4	9448	broad.mit.edu	37	2	102441875	102441875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102441875C>T	uc002tbg.2	+	5	456	c.401C>T	c.(400-402)TCC>TTC	p.S134F	MAP4K4_uc002tbc.2_Missense_Mutation_p.S134F|MAP4K4_uc002tbd.2_Missense_Mutation_p.S134F|MAP4K4_uc002tbe.2_Missense_Mutation_p.S134F|MAP4K4_uc002tbf.2_Missense_Mutation_p.S134F|MAP4K4_uc010yvy.1_Missense_Mutation_p.S134F|MAP4K4_uc002tbh.2_Missense_Mutation_p.S134F|MAP4K4_uc002tbi.2_Missense_Mutation_p.S134F|MAP4K4_uc010yvz.1_Missense_Mutation_p.S114F|MAP4K4_uc010fiw.1_Intron|MAP4K4_uc002tbj.1_Missense_Mutation_p.S30F	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	134	Protein kinase.				intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GCTTACATCTCCAGAGAAATC	0.478													9	34					0	0	1	0	0
MAP4K4	9448	broad.mit.edu	37	2	102490132	102490132	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102490132C>T	uc002tbg.2	+	22	2596	c.2541C>T	c.(2539-2541)CTC>CTT	p.L847L	MAP4K4_uc002tbc.2_Silent_p.L928L|MAP4K4_uc002tbd.2_Silent_p.L820L|MAP4K4_uc002tbe.2_Silent_p.L766L|MAP4K4_uc002tbf.2_Silent_p.L881L|MAP4K4_uc010yvy.1_Silent_p.L843L|MAP4K4_uc002tbh.2_Silent_p.L765L|MAP4K4_uc002tbi.2_Silent_p.L650L|MAP4K4_uc010yvz.1_Silent_p.L887L|MAP4K4_uc002tbk.2_Silent_p.L302L|MAP4K4_uc002tbl.2_Silent_p.L33L	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	847					intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity	p.S847fs*37(1)		stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GTAGCACACTCCAGAAACACA	0.363													6	24					0	0	1	0	0
IL1R2	7850	broad.mit.edu	37	2	102626047	102626047	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102626047C>T	uc002tbm.2	+	3	320	c.91C>T	c.(91-93)CGT>TGT	p.R31C	IL1R2_uc002tbn.2_Missense_Mutation_p.R31C|IL1R2_uc002tbo.1_Missense_Mutation_p.R31C	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	31	Extracellular (Potential).|Ig-like C2-type 1.				immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	CTGCCGGTTTCGTGGGAGGCA	0.612													53	143					0	0	1	0	0
IL1RL2	8808	broad.mit.edu	37	2	102849529	102849529	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102849529G>A	uc002tbs.2	+	10	1368	c.1242G>A	c.(1240-1242)GAG>GAA	p.E414E	IL1RL2_uc002tbt.2_Silent_p.E296E	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	414	TIR.|Cytoplasmic (Potential).				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						AGGTGTTGGAGAGACAATGTG	0.448													39	73					0	0	1	0	0
IL1RL2	8808	broad.mit.edu	37	2	102851377	102851377	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102851377G>A	uc002tbs.2	+	11	1444	c.1318G>A	c.(1318-1320)GAA>AAA	p.E440K	IL1RL2_uc002tbt.2_Missense_Mutation_p.E322K	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	440	TIR.|Cytoplasmic (Potential).				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						TGTCATCGATGAAAACGTTAA	0.463													29	68					0	0	1	0	0
IL1RL2	8808	broad.mit.edu	37	2	102851526	102851526	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102851526G>A	uc002tbs.2	+	11	1593	c.1467G>A	c.(1465-1467)GAG>GAA	p.E489E	IL1RL2_uc002tbt.2_Silent_p.E371E	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	489	TIR.|Cytoplasmic (Potential).				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						TTGAGCTGGAGAAAATCGAGG	0.512													33	87					0	0	1	0	0
IL1RL1	9173	broad.mit.edu	37	2	102956585	102956585	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102956585G>A	uc002tbu.1	+	4	571	c.300G>A	c.(298-300)GCG>GCA	p.A100A	IL1RL1_uc010ywa.1_5'UTR|IL18R1_uc002tbw.3_Intron|IL1RL1_uc002tbv.2_Silent_p.A100A	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	100	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CTGGATATGCGAATGTCACCA	0.299													7	30					0	0	1	0	0
IL1RL1	9173	broad.mit.edu	37	2	102959618	102959618	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102959618G>A	uc002tbu.1	+	7	1076	c.805G>A	c.(805-807)GAG>AAG	p.E269K	IL1RL1_uc010ywa.1_Missense_Mutation_p.E152K|IL18R1_uc002tbw.3_Intron|IL1RL1_uc002tbv.2_Missense_Mutation_p.E269K	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	269	Extracellular (Potential).|Ig-like C2-type 3.				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						AATTCAACAAGAGGAAGGGCA	0.418													30	132					0	0	1	0	0
IL1RL1	9173	broad.mit.edu	37	2	102964547	102964547	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102964547G>A	uc002tbu.1	+	9	1384	c.1113G>A	c.(1111-1113)AGG>AGA	p.R371R	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	371	Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						ACAAGACTAGGAATGGTAAGT	0.378													30	50					0	0	1	0	0
IL1RL1	9173	broad.mit.edu	37	2	102968013	102968013	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:102968013G>A	uc002tbu.1	+	11	1574	c.1303G>A	c.(1303-1305)GAA>AAA	p.E435K	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	435	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CACTGCAGTGGAAACCAACAT	0.413													21	66					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103040467	103040467	+	Silent	SNP	G	A	A	rs11465694		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103040467G>A	uc002tbx.2	+	4	751	c.267G>A	c.(265-267)TCG>TCA	p.S89S	IL18RAP_uc010fiz.2_Intron	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	89	Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						AACAACCTTCGAATGGAGATC	0.458													22	52					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103063558	103063558	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103063558C>T	uc002tbx.2	+	10	1585	c.1101C>T	c.(1099-1101)ACC>ACT	p.T367T	IL18RAP_uc010fiz.2_Silent_p.T225T	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	367	Helical; (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						TGCTTGGCACCATCGGGACCC	0.592													81	226					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103067330	103067330	+	Silent	SNP	C	T	T	rs140183707	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103067330C>T	uc002tbx.2	+	11	1717	c.1233C>T	c.(1231-1233)TTC>TTT	p.F411F	IL18RAP_uc010fiz.2_Silent_p.F269F	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	411	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						TTGATGCTTTCGTATCCTATG	0.343													36	78					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103068524	103068524	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103068524G>A	uc002tbx.2	+	12	2167	c.1683G>A	c.(1681-1683)GTG>GTA	p.V561V	IL18RAP_uc010fiz.2_Silent_p.V419V	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	561	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						ACATGCCTGTGAAAAACTCTC	0.473													71	144					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103068633	103068633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103068633G>A	uc002tbx.2	+	12	2276	c.1792G>A	c.(1792-1794)GAA>AAA	p.E598K	IL18RAP_uc010fiz.2_Missense_Mutation_p.E456K	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	598	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CCAGCCTAAGGAATGGTGAAA	0.517													40	77					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103120032	103120032	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103120032C>T	uc002tbz.3	+	3	1303	c.846C>T	c.(844-846)ATC>ATT	p.I282I		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	282	Helical; Name=H/M6; (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TGTTTGGCATCGTTTTTGGAT	0.398													21	51					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103124627	103124627	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103124627C>T	uc002tbz.3	+	5	1745	c.1288C>T	c.(1288-1290)CGA>TGA	p.R430*		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	430					regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						CAGTGGTGTTCGAGGAGCTGG	0.413													39	86					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103124631	103124631	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103124631G>A	uc002tbz.3	+	5	1749	c.1292G>A	c.(1291-1293)GGA>GAA	p.G431E		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	431					regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GGTGTTCGAGGAGCTGGAAGT	0.398													30	91					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103124664	103124664	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103124664C>T	uc002tbz.3	+	5	1782	c.1325C>T	c.(1324-1326)CCT>CTT	p.P442L		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	442	Extracellular (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TTTTTGCTTCCTCTGTCTCTT	0.378													31	60					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103142729	103142729	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103142729G>A	uc002tbz.3	+	11	2419	c.1962G>A	c.(1960-1962)AAG>AAA	p.K654K		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	654	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						CTGGCACCAAGAATATCCGCT	0.458													41	114					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103142759	103142759	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103142759G>A	uc002tbz.3	+	11	2449	c.1992G>A	c.(1990-1992)GGG>GGA	p.G664G		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	664	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						ACCCCTACGGGAATCCTCAGT	0.458													38	92					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103149037	103149037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103149037G>A	uc002tbz.3	+	12	2744	c.2287G>A	c.(2287-2289)GAG>AAG	p.E763K		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	763	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GTCTGGAGGGGAGAGTGAGGG	0.552													11	31					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103274171	103274171	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103274171C>T	uc002tca.2	+	2	580	c.438C>T	c.(436-438)CTC>CTT	p.L146L		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	146	Helical; Name=D/M4; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TGTACCTCCTCCCACCCATCG	0.458													63	237					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103299894	103299894	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103299894C>T	uc002tca.2	+	4	1321	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	393	Helical; Name=K/M9; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						ACTGGGCCTTCGTCTGCTTCA	0.507													8	75					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103300777	103300777	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103300777C>T	uc002tca.2	+	5	1549	c.1407C>T	c.(1405-1407)TTC>TTT	p.F469F		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	469	Helical; Name=M13; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TTGTCATATTCTTTACTGTCT	0.403													62	172					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103310945	103310945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103310945G>A	uc002tca.2	+	6	1640	c.1498G>A	c.(1498-1500)GAA>AAA	p.E500K		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	500	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						AGCTGTCAGTGAAGAAATCTA	0.363													15	67					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103311564	103311564	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103311564G>A	uc002tca.2	+	7	1720	c.1578G>A	c.(1576-1578)TGG>TGA	p.W526*		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	526	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						ACAACTTTTGGAGAGACAAGT	0.368													39	156					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103321104	103321104	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103321104G>A	uc002tca.2	+	10	2089	c.1947G>A	c.(1945-1947)AGG>AGA	p.R649R		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	649	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						AAAGCATTAGGAAGGACAGCA	0.512													23	61					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103324856	103324856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103324856G>A	uc002tca.2	+	12	2489	c.2347G>A	c.(2347-2349)GAA>AAA	p.E783K		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	783	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						CAGTTTGACTGAAGGCATCCC	0.577													36	119					0	0	1	0	0
MFSD9	84804	broad.mit.edu	37	2	103335015	103335015	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:103335015G>A	uc002tcb.2	-	6	1357	c.1289C>T	c.(1288-1290)TCG>TTG	p.S430L	MFSD9_uc010fja.2_RNA	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing	430					transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						GGCAACCCCCGAGAGGAGAGG	0.637													13	62					0	0	1	0	0
NCK2	8440	broad.mit.edu	37	2	106509458	106509458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:106509458C>T	uc002tdg.2	+	5	1411	c.969C>T	c.(967-969)TCC>TCT	p.S323S	NCK2_uc002tdh.2_Missense_Mutation_p.P83S|NCK2_uc002tdi.2_Silent_p.S323S	NM_003581	NP_003572	O43639	NCK2_HUMAN	NCK adaptor protein 2 isoform A	323	SH2.				axon guidance|epidermal growth factor receptor signaling pathway|negative regulation of cell proliferation|positive regulation of actin filament polymerization|positive regulation of T cell proliferation|regulation of epidermal growth factor receptor activity|regulation of translation|signal complex assembly|T cell activation	cytosol|endoplasmic reticulum	cytoskeletal adaptor activity|receptor signaling complex scaffold activity			ovary(1)|lung(1)	2						TCTCCGTGTCCCTTAAAGCGT	0.567													20	73					0	0	1	0	0
PLGLA	285189	broad.mit.edu	37	2	107002817	107002817	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107002817G>A	uc002tdp.2	+	1		c.49G>A				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						CTGGGGGCAGGAAGCAGAGAA	0.483													96	231					0	0	1	0	0
PLGLA	285189	broad.mit.edu	37	2	107002828	107002828	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107002828G>A	uc002tdp.2	+	1		c.60G>A				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						AAGCAGAGAAGAATGTGCAGC	0.473													66	276					0	0	1	0	0
PLGLA	285189	broad.mit.edu	37	2	107004058	107004058	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107004058G>A	uc002tdp.2	+	2		c.147G>A				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						TGTGATAATGGCTGAAAACAA	0.279													54	190					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107040194	107040194	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107040194C>T	uc010ywi.1	-	20	4286	c.4229G>A	c.(4228-4230)AGA>AAA	p.R1410K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1410	RanBD1 2.				intracellular transport		binding			ovary(1)	1						TGGAGTTATTCTGTGATTGGC	0.373													113	280					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107041010	107041010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107041010G>A	uc010ywi.1	-	20	3470	c.3413C>T	c.(3412-3414)TCT>TTT	p.S1138F		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1138	RanBD1 1.				intracellular transport		binding			ovary(1)	1						ATCACCATCAGAGAAATCACT	0.448													84	127					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107041545	107041545	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107041545C>T	uc010ywi.1	-	20	2935	c.2878G>A	c.(2878-2880)GGT>AGT	p.G960S		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	960					intracellular transport		binding			ovary(1)	1						AAAATCACACCACGGCCCTTC	0.403													78	284					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107423262	107423262	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107423262C>T	uc002tdq.2	-	6	1581	c.1462G>A	c.(1462-1464)GAG>AAG	p.E488K	ST6GAL2_uc002tdr.2_Missense_Mutation_p.E488K	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	488	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						AGGAGCTTCTCATAGAGTAGT	0.617													24	65					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107450550	107450550	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107450550C>T	uc002tdq.2	-	3	1115	c.996G>A	c.(994-996)GAG>GAA	p.E332E	ST6GAL2_uc002tdr.2_Silent_p.E332E|ST6GAL2_uc002tds.3_Silent_p.E332E	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	332	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CAACATCTTTCTCATAACCAC	0.388													35	105					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459983	107459983	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107459983G>A	uc002tdq.2	-	2	570	c.451C>T	c.(451-453)CCT>TCT	p.P151S	ST6GAL2_uc002tdr.2_Missense_Mutation_p.P151S|ST6GAL2_uc002tds.3_Missense_Mutation_p.P151S	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	151	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CCGGGGGAAGGGAATCCCAAT	0.607													65	174					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460299	107460299	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107460299G>A	uc002tdq.2	-	2	254	c.135C>T	c.(133-135)TTC>TTT	p.F45F	ST6GAL2_uc002tdr.2_Silent_p.F45F|ST6GAL2_uc002tds.3_Silent_p.F45F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	45	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TGGTCTCCAGGAAGGAGAGGG	0.632													4	47					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460392	107460392	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107460392G>A	uc002tdq.2	-	2	161	c.42C>T	c.(40-42)TTC>TTT	p.F14F	ST6GAL2_uc002tdr.2_Silent_p.F14F|ST6GAL2_uc002tds.3_Silent_p.F14F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	14	Helical; Signal-anchor for type II membrane protein; (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CGAATATTCCGAAAAGCATTC	0.512													23	55					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460402	107460402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:107460402C>T	uc002tdq.2	-	2	151	c.32G>A	c.(31-33)CGA>CAA	p.R11Q	ST6GAL2_uc002tdr.2_Missense_Mutation_p.R11Q|ST6GAL2_uc002tds.3_Missense_Mutation_p.R11Q	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	11	Cytoplasmic (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GAAAAGCATTCGTTGTCTCCA	0.507													23	47					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108455370	108455370	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108455370G>A	uc010ywk.1	+	4	437	c.355G>A	c.(355-357)GAA>AAA	p.E119K	RGPD4_uc002tdu.2_5'UTR	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	119					intracellular transport		binding			skin(2)	2						ATACTGGGTGGAAAGAGCAGC	0.343													110	237					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108487953	108487953	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108487953G>A	uc010ywk.1	+	20	3575	c.3493G>A	c.(3493-3495)GAG>AAG	p.E1165K	RGPD4_uc002tdu.2_Missense_Mutation_p.E352K|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1165	RanBD1 1.				intracellular transport		binding			skin(2)	2						GCAGAAATTTGAGGAATGCCA	0.433													22	203					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108488296	108488296	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108488296G>A	uc010ywk.1	+	20	3918	c.3836G>A	c.(3835-3837)AGA>AAA	p.R1279K	RGPD4_uc002tdu.2_Missense_Mutation_p.R466K|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1279					intracellular transport		binding			skin(2)	2						AGCCCTGTGAGAAAAAATCTT	0.393													122	338					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108488490	108488490	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108488490C>T	uc010ywk.1	+	20	4112	c.4030C>T	c.(4030-4032)CTA>TTA	p.L1344L	RGPD4_uc002tdu.2_Silent_p.L531L|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1344	RanBD1 2.				intracellular transport		binding			skin(2)	2						TTTACCTGATCTAGTTGAAGT	0.393													113	278					0	0	1	0	0
SLC5A7	60482	broad.mit.edu	37	2	108622612	108622612	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108622612G>A	uc002tdv.2	+	7	1125	c.849G>A	c.(847-849)GTG>GTA	p.V283V	SLC5A7_uc010ywm.1_Silent_p.V36V|SLC5A7_uc010fjj.2_Silent_p.V283V|SLC5A7_uc010ywn.1_Silent_p.V170V	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	283	Helical; (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	GGTGCCTGGTGATGGCCATCC	0.527													33	76					0	0	1	0	0
SLC5A7	60482	broad.mit.edu	37	2	108626796	108626796	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108626796C>T	uc002tdv.2	+	9	1498	c.1222C>T	c.(1222-1224)CTC>TTC	p.L408F	SLC5A7_uc010ywm.1_Missense_Mutation_p.L161F|SLC5A7_uc010fjj.2_Missense_Mutation_p.L408F|SLC5A7_uc010ywn.1_Missense_Mutation_p.L295F	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	408	Helical; (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	GCTCTGGTACCTCAGTTCTGA	0.473													16	90					0	0	1	0	0
SULT1C3	442038	broad.mit.edu	37	2	108869898	108869898	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108869898G>A	uc010ywo.1	+	3	399	c.399G>A	c.(397-399)AAG>AAA	p.K133K		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	133						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						AAAACTGCAAGGTATAAAGAG	0.338													24	54					0	0	1	0	0
SULT1C3	442038	broad.mit.edu	37	2	108872050	108872051	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108872050_108872051CC>TT	uc010ywo.1	+	4	422_423	c.422_423CC>TT	c.(421-423)CCC>CTT	p.P141L		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	141	PAPS.					cytoplasm	alcohol sulfotransferase activity			skin(1)	1						GCCAGAAATCCCAAGGATTGCC	0.421													50	114					0	0	1	0	0
SULT1C3	442038	broad.mit.edu	37	2	108872124	108872124	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108872124G>A	uc010ywo.1	+	4	496	c.496G>A	c.(496-498)GAA>AAA	p.E166K		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	166						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						GAACTTAGAGGAATTTTATGA	0.428													7	94					0	0	1	0	0
SULT1C4	27233	broad.mit.edu	37	2	108998259	108998259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108998259G>A	uc002tea.1	+	2	584	c.211G>A	c.(211-213)GAA>AAA	p.E71K	SULT1C4_uc002tdz.2_Missense_Mutation_p.E71K|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.E71K	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	71					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						AATACAAAATGAAGGTGATGT	0.378													20	51					0	0	1	0	0
SULT1C4	27233	broad.mit.edu	37	2	108998338	108998338	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108998338G>A	uc002tea.1	+	2	663	c.290G>A	c.(289-291)GGA>GAA	p.G97E	SULT1C4_uc002tdz.2_Missense_Mutation_p.G97E|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.G97E	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	97					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						CCATCCTTAGGATCTGGTGAG	0.373													18	76					0	0	1	0	0
SULT1C4	27233	broad.mit.edu	37	2	108999633	108999633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:108999633G>A	uc002tea.1	+	4	851	c.478G>A	c.(478-480)GGA>AGA	p.G160R	SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Intron	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	160					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						TCCTGCTCCAGGAACATGGGA	0.413													52	93					0	0	1	0	0
GCC2	9648	broad.mit.edu	37	2	109088468	109088468	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:109088468C>T	uc002tec.2	+	6	2837	c.2683C>T	c.(2683-2685)CAT>TAT	p.H895Y	GCC2_uc002ted.2_Missense_Mutation_p.H794Y	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	895	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						AAGTGAAATCCATAATGAAAA	0.294													17	70					0	0	1	0	0
LIMS1	3987	broad.mit.edu	37	2	109276190	109276190	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:109276190C>T	uc002teg.2	+	2	245	c.126C>T	c.(124-126)TTC>TTT	p.F42F	LIMS1_uc002tef.2_Silent_p.F54F|LIMS1_uc002teh.2_Silent_p.F42F|LIMS1_uc002tei.2_Silent_p.F42F|LIMS1_uc002tej.2_Silent_p.F79F|LIMS1_uc002tek.3_Silent_p.F104F	NM_004987	NP_004978	P48059	LIMS1_HUMAN	LIM and senescent cell antigen-like domains 1	42	LIM zinc-binding 1.			F->A: Loss of interaction with ILK and loss of localization to focal adhesion.	cell aging|cell junction assembly|cellular response to transforming growth factor beta stimulus|negative regulation of transcription, DNA-dependent	cytosol|focal adhesion|perinuclear region of cytoplasm	protein binding|zinc ion binding				0						CTCAGTGCTTCCAGCAGTTCC	0.577													19	98					0	0	1	0	0
LIMS1	3987	broad.mit.edu	37	2	109276206	109276206	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:109276206G>T	uc002teg.2	+	2	261	c.142G>T	c.(142-144)GGA>TGA	p.G48*	LIMS1_uc002tef.2_Nonsense_Mutation_p.G60*|LIMS1_uc002teh.2_Nonsense_Mutation_p.G48*|LIMS1_uc002tei.2_Nonsense_Mutation_p.G48*|LIMS1_uc002tej.2_Nonsense_Mutation_p.G85*|LIMS1_uc002tek.3_Nonsense_Mutation_p.G110*	NM_004987	NP_004978	P48059	LIMS1_HUMAN	LIM and senescent cell antigen-like domains 1	48	LIM zinc-binding 1.				cell aging|cell junction assembly|cellular response to transforming growth factor beta stimulus|negative regulation of transcription, DNA-dependent	cytosol|focal adhesion|perinuclear region of cytoplasm	protein binding|zinc ion binding				0						GTTCCCAGAAGGACTCTTCTA	0.577													23	92					5.35356e-11	5.37259e-11	1	1	0
CCDC138	165055	broad.mit.edu	37	2	109411018	109411018	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:109411018C>T	uc002ten.1	+	5	477	c.417C>T	c.(415-417)ACC>ACT	p.T139T	CCDC138_uc002teo.1_Silent_p.T139T|CCDC138_uc002tep.1_5'UTR|CCDC138_uc010fjm.1_5'UTR	NM_144978	NP_659415	Q96M89	CC138_HUMAN	coiled-coil domain containing 138	139											0						CTAATACGACCTCATCGAGAC	0.388													29	75					0	0	1	0	0
CCDC138	165055	broad.mit.edu	37	2	109489954	109489954	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:109489954C>T	uc002ten.1	+	14	1801	c.1741C>T	c.(1741-1743)CGT>TGT	p.R581C	CCDC138_uc002teo.1_Intron|CCDC138_uc002tep.1_Missense_Mutation_p.R265C|CCDC138_uc010fjm.1_Intron	NM_144978	NP_659415	Q96M89	CC138_HUMAN	coiled-coil domain containing 138	581											0						TTTATTTTTTCGTACTTGCTC	0.368													42	87					0	0	1	0	0
EDAR	10913	broad.mit.edu	37	2	109513549	109513549	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:109513549C>T	uc002teq.3	-	12	1592	c.1161G>A	c.(1159-1161)GAG>GAA	p.E387E	EDAR_uc010fjn.2_Silent_p.E419E|EDAR_uc010yws.1_Silent_p.E419E	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	387	Death.|Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						TGCCCCCAATCTCATCCCTCT	0.562													11	44					0	0	1	0	0
SH3RF3	344558	broad.mit.edu	37	2	110053528	110053528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:110053528C>T	uc010ywt.1	+	7	1754	c.1754C>T	c.(1753-1755)TCG>TTG	p.S585L		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	585							zinc ion binding			ovary(1)	1						CCCACAGCCTCGCCCCCAACA	0.682													11	28					0	0	1	0	0
SH3RF3	344558	broad.mit.edu	37	2	110065788	110065788	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:110065788C>T	uc010ywt.1	+	8	1991	c.1991C>T	c.(1990-1992)CCG>CTG	p.P664L		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	664							zinc ion binding			ovary(1)	1						TGCCCACGGCCGGCCATCCCC	0.677													5	17					0	0	1	0	0
NPHP1	4867	broad.mit.edu	37	2	110901148	110901148	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:110901148G>A	uc002tfn.3	-	16	1759	c.1665C>T	c.(1663-1665)TCC>TCT	p.S555S	NPHP1_uc002tfm.3_Silent_p.S500S|NPHP1_uc002tfl.3_Silent_p.S556S|NPHP1_uc002tfo.3_Silent_p.S437S|NPHP1_uc010ywx.1_Silent_p.S499S|NPHP1_uc010fjv.1_Silent_p.S499S	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	555					actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						TTCTGTTCAAGGATCTCAGTT	0.413													7	100					0	0	1	0	0
NPHP1	4867	broad.mit.edu	37	2	110902115	110902115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:110902115G>A	uc002tfn.3	-	15	1643	c.1549C>T	c.(1549-1551)CCT>TCT	p.P517S	NPHP1_uc002tfm.3_Missense_Mutation_p.P462S|NPHP1_uc002tfl.3_Missense_Mutation_p.P518S|NPHP1_uc002tfo.3_Missense_Mutation_p.P399S|NPHP1_uc010ywx.1_Missense_Mutation_p.P461S|NPHP1_uc010fjv.1_Missense_Mutation_p.P461S	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	517					actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						TTTTCATAAGGAGTACCACCA	0.358													33	70					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111551725	111551725	+	Missense_Mutation	SNP	G	A	A	rs150003283	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:111551725G>A	uc002tgr.3	+	5	543	c.319G>A	c.(319-321)GAA>AAA	p.E107K	ACOXL_uc010fkc.2_Missense_Mutation_p.E107K|ACOXL_uc010yxk.1_Missense_Mutation_p.E107K	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	107					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						GATCCAGACCGAAGCCACCTT	0.537													14	62					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111789272	111789272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:111789272C>T	uc002tgr.3	+	16	1664	c.1440C>T	c.(1438-1440)TCC>TCT	p.S480S	ACOXL_uc010fkc.2_Silent_p.S450S|ACOXL_uc010yxk.1_Silent_p.S450S	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	480					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						CTTCTCTGTCCCTGGCACACA	0.502													19	65					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111850537	111850537	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:111850537G>A	uc002tgr.3	+	18	1850	c.1626G>A	c.(1624-1626)AGG>AGA	p.R542R	ACOXL_uc010fkc.2_Silent_p.R512R|ACOXL_uc010yxk.1_Silent_p.R512R	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	542					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						CGAGGATCAGGAATCAGGTAA	0.458													26	54					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112686832	112686832	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:112686832C>T	uc002thk.1	+	2	319	c.197C>T	c.(196-198)TCA>TTA	p.S66L	MERTK_uc002thl.1_5'UTR	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	66	Extracellular (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TTGATGTTTTCACCAACCCAG	0.557													13	40					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112732956	112732956	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:112732956G>A	uc002thk.1	+	7	1173	c.1051G>A	c.(1051-1053)GCC>ACC	p.A351T	MERTK_uc002thl.1_Missense_Mutation_p.A175T	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	351	Fibronectin type-III 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						GCAGCTGCAAGCCCTGGCTAA	0.473													63	142					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112758801	112758801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:112758801C>T	uc002thk.1	+	11	1750	c.1628C>T	c.(1627-1629)TCT>TTT	p.S543F	MERTK_uc002thl.1_Missense_Mutation_p.S367F	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	543	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						GAGGAGGATTCTGAATTAGTG	0.403													33	51					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112777075	112777075	+	Missense_Mutation	SNP	G	A	A	rs147779020	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:112777075G>A	uc002thk.1	+	16	2287	c.2165G>A	c.(2164-2166)CGA>CAA	p.R722Q	MERTK_uc002thl.1_Missense_Mutation_p.R546Q	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	722	Protein kinase.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TTTCTTCATCGAGATTTAGCT	0.463													52	91					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112786202	112786202	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:112786202G>A	uc002thk.1	+	19	2883	c.2761G>A	c.(2761-2763)GAC>AAC	p.D921N	MERTK_uc002thl.1_Missense_Mutation_p.D745N	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	921	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						AGAAGTTCATGACAGCAAACC	0.537													43	113					0	0	1	0	0
FBLN7	129804	broad.mit.edu	37	2	112944888	112944888	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:112944888C>T	uc002tho.1	+	8	1396	c.1125C>T	c.(1123-1125)ATC>ATT	p.I375I	FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Silent_p.I329I|FBLN7_uc010fkj.1_Silent_p.I241I	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	375					cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						GGTTTGGGATCGTGGGTGGGA	0.642													56	101					0	0	1	0	0
ZC3H6	376940	broad.mit.edu	37	2	113089137	113089137	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113089137C>T	uc002thq.1	+	12	3036	c.2642C>T	c.(2641-2643)CCC>CTC	p.P881L		NM_198581	NP_940983	P61129	ZC3H6_HUMAN	zinc finger CCCH-type domain containing 6	881							nucleic acid binding|zinc ion binding			ovary(3)|central_nervous_system(1)	4						GTGTGGGCTCCCGAAGACTTA	0.428													12	33					0	0	1	0	0
CHCHD5	84269	broad.mit.edu	37	2	113343825	113343825	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113343825C>T	uc002thz.1	+	3	381	c.192C>T	c.(190-192)GCC>GCT	p.A64A	CHCHD5_uc002tia.2_Silent_p.A64A	NM_032309	NP_115685	Q9BSY4	CHCH5_HUMAN	coiled-coil-helix-coiled-coil-helix domain	64	CHCH.										0						CTTTTGAGGCCTTCGAGGAGT	0.637													19	54					0	0	1	0	0
SLC20A1	6574	broad.mit.edu	37	2	113416991	113416991	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113416991C>T	uc002tib.2	+	8	1705	c.1259C>T	c.(1258-1260)TCC>TTC	p.S420F	SLC20A1_uc002tic.1_Missense_Mutation_p.S232F	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	420	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						AGCTATACTTCCTATACCATG	0.463													31	80					0	0	1	0	0
IL1B	3553	broad.mit.edu	37	2	113587942	113587942	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113587942G>A	uc002tii.1	-	7	893	c.806C>T	c.(805-807)TCC>TTC	p.S269F	IL1B_uc002tih.1_Missense_Mutation_p.S238F	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	269					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	CTCTCTTTAGGAAGACACAAA	0.502													24	100					0	0	1	0	0
IL1B	3553	broad.mit.edu	37	2	113588899	113588899	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113588899C>T	uc002tii.1	-	6	654	c.567G>A	c.(565-567)TTG>TTA	p.L189L	IL1B_uc002tih.1_Silent_p.L158L	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	189					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	TATCATCTTTCAACACGCAGG	0.468													69	166					0	0	1	0	0
IL1F9	56300	broad.mit.edu	37	2	113736250	113736250	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113736250G>A	uc002tio.1	+	2	104	c.35G>A	c.(34-36)GGA>GAA	p.G12E	IL1F9_uc010fkr.1_Missense_Mutation_p.G12E	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	12					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						GATGGTGGAGGAAGGGCCGTC	0.527													23	52					0	0	1	0	0
IL1F9	56300	broad.mit.edu	37	2	113736846	113736846	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113736846G>A	uc002tio.1	+	3	173	c.104G>A	c.(103-105)TGG>TAG	p.W35*	IL1F9_uc010fkr.1_Intron	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	35					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						CAGCAAGTGTGGACCCTTCAG	0.448													12	59					0	0	1	0	0
IL1F9	56300	broad.mit.edu	37	2	113736882	113736882	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113736882G>A	uc002tio.1	+	3	209	c.140G>A	c.(139-141)CGA>CAA	p.R47Q	IL1F9_uc010fkr.1_Intron	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	47					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						GCAGTTCCACGAAGTGACAGT	0.493													11	45					0	0	1	0	0
IL1F8	27177	broad.mit.edu	37	2	113788732	113788732	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113788732C>T	uc002tiq.1	-	3	118	c.14G>A	c.(13-15)CGG>CAG	p.R5Q	IL1F8_uc002tir.1_Missense_Mutation_p.R5Q	NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	5					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						TGCTGCCTCCCCTGCCAGATG	0.458													16	34					0	0	1	0	0
IL1F5	26525	broad.mit.edu	37	2	113817030	113817030	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113817030G>A	uc002tis.2	+	2	148	c.15G>A	c.(13-15)GGG>GGA	p.G5G	IL1F5_uc002tit.2_Silent_p.G5G	NM_173170	NP_775262	Q9UBH0	I36RA_HUMAN	interleukin 1 family, member 5	5						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						TCCTGAGTGGGGCGCTGTGCT	0.552													16	54					0	0	1	0	0
IL1F5	26525	broad.mit.edu	37	2	113818501	113818501	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113818501G>A	uc002tis.2	+	3	235	c.102G>A	c.(100-102)GGG>GGA	p.G34G	IL1F5_uc002tit.2_Silent_p.G34G	NM_173170	NP_775262	Q9UBH0	I36RA_HUMAN	interleukin 1 family, member 5	34						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						TGCATGCAGGGAAGGTCATTA	0.483													11	43					0	0	1	0	0
IL1F10	84639	broad.mit.edu	37	2	113832841	113832841	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113832841G>A	uc002tiu.2	+	5	434	c.359G>A	c.(358-360)TGG>TAG	p.W120*	IL1F10_uc002tiv.2_Nonsense_Mutation_p.W120*|IL1F10_uc002tiw.2_Nonsense_Mutation_p.W112*	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	120						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						TGGCCTGGCTGGTTCCTGTGT	0.592													37	147					0	0	1	0	0
IL1RN	3557	broad.mit.edu	37	2	113875558	113875558	+	Translation_Start_Site	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113875558A>T	uc002tiz.2	+	1	89	c.-37A>T	c.(-39--35)GAAGA>GATGA		IL1RN_uc002tix.1_Intron|IL1RN_uc002tiy.2_Translation_Start_Site|IL1RN_uc002tja.2_Translation_Start_Site	NM_173841	NP_776213	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 2						immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	AGAGTCTGGAAGACCTCAGAA	0.542									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				31	131					0	0	1	0	0
IL1RN	3557	broad.mit.edu	37	2	113890408	113890408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113890408G>A	uc002tjb.2	+	4	558	c.494G>A	c.(493-495)GGC>GAC	p.G165D	IL1RN_uc002tix.1_RNA|IL1RN_uc002tiy.2_Missense_Mutation_p.G131D|IL1RN_uc002tiz.2_Missense_Mutation_p.G168D|IL1RN_uc002tja.2_Missense_Mutation_p.G147D	NM_173842	NP_776214	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 1	165					immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	CCTGACGAAGGCGTCATGGTC	0.587									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				24	113					0	0	1	0	0
IL1RN	3557	broad.mit.edu	37	2	113890437	113890437	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113890437G>A	uc002tjb.2	+	4	587	c.523G>A	c.(523-525)GAG>AAG	p.E175K	IL1RN_uc002tix.1_RNA|IL1RN_uc002tiy.2_Missense_Mutation_p.E141K|IL1RN_uc002tiz.2_Missense_Mutation_p.E178K|IL1RN_uc002tja.2_Missense_Mutation_p.E157K	NM_173842	NP_776214	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 1	175					immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	CTACTTCCAGGAGGACGAGTA	0.612									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				11	99					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113940519	113940519	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113940519G>A	uc002tjc.2	+	2	669	c.486G>A	c.(484-486)CAG>CAA	p.Q162Q	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Silent_p.Q161Q|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	162					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GCATCCTGCAGGCCCAGATGT	0.617													6	84					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113940669	113940669	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113940669G>A	uc002tjc.2	+	2	819	c.636G>A	c.(634-636)GGG>GGA	p.G212G	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Silent_p.G211G|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	212					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						AAGACTCAGGGGAAGACAGCA	0.637													8	35					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113940807	113940807	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113940807G>A	uc002tjc.2	+	2	957	c.774G>A	c.(772-774)GAG>GAA	p.E258E	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Silent_p.E257E|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	258					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CTTGCTCAGAGAACAGTGCTT	0.607													28	65					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113943595	113943595	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113943595C>T	uc002tjc.2	+	5	1574	c.1391C>T	c.(1390-1392)TCG>TTG	p.S464L	PSD4_uc002tjd.2_Missense_Mutation_p.S85L|PSD4_uc002tje.2_Missense_Mutation_p.S435L|PSD4_uc002tjf.2_Missense_Mutation_p.S85L	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	464					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						AGCCCTGCATCGTCCCAGGAG	0.617													14	38					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113943683	113943683	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113943683G>A	uc002tjc.2	+	5	1662	c.1479G>A	c.(1477-1479)TTG>TTA	p.L493L	PSD4_uc002tjd.2_Silent_p.L114L|PSD4_uc002tje.2_Silent_p.L464L|PSD4_uc002tjf.2_Silent_p.L114L	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	493					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CTTCACTCTTGGAGACGGATG	0.567													26	68					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113950885	113950885	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113950885G>A	uc002tjc.2	+	8	2153	c.1970G>A	c.(1969-1971)CGA>CAA	p.R657Q	PSD4_uc002tjd.2_Missense_Mutation_p.R278Q|PSD4_uc002tje.2_Missense_Mutation_p.R628Q|PSD4_uc002tjf.2_Missense_Mutation_p.R278Q	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	657	SEC7.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GAACGGGAGCGAATCCTCTAC	0.607													27	68					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113953812	113953812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113953812G>A	uc002tjc.2	+	12	2497	c.2314G>A	c.(2314-2316)GAT>AAT	p.D772N	PSD4_uc002tjd.2_Missense_Mutation_p.D393N|PSD4_uc002tje.2_Missense_Mutation_p.D743N|PSD4_uc002tjf.2_Missense_Mutation_p.D393N|PSD4_uc002tjg.2_5'Flank|PSD4_uc010yxs.1_5'Flank|PSD4_uc002tjh.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	772					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GCTGGCTCAGGATCCCACAGT	0.567													16	45					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113955458	113955458	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113955458G>A	uc002tjc.2	+	14	2775	c.2592G>A	c.(2590-2592)ACG>ACA	p.T864T	PSD4_uc002tjd.2_Silent_p.T484T|PSD4_uc002tje.2_Silent_p.T834T|PSD4_uc002tjf.2_Silent_p.T485T|PSD4_uc002tjg.2_Silent_p.T30T|PSD4_uc010yxs.1_Silent_p.T94T|PSD4_uc002tjh.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	864	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						AGCTGCGCACGGCTGACTGGC	0.657													11	23					0	0	1	0	0
PAX8	7849	broad.mit.edu	37	2	113999136	113999136	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113999136C>T	uc010yxt.1	-	7	935	c.769G>A	c.(769-771)GGC>AGC	p.G257S	PAX8_uc010yxu.1_Missense_Mutation_p.G257S|PAX8_uc010yxv.1_Missense_Mutation_p.G257S|PAX8_uc002tjm.2_Missense_Mutation_p.G257S|PAX8_uc002tjn.2_Missense_Mutation_p.G257S|PAX8_uc010fku.1_Missense_Mutation_p.G257S|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	257					branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						ACCTGCTCGCCTTTGGTGTGG	0.617			T	PPARG	follicular thyroid		Thyroid dysgenesis 						6	4					0	0	1	0	0
PAX8	7849	broad.mit.edu	37	2	113999206	113999206	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113999206G>A	uc010yxt.1	-	7	865	c.699C>T	c.(697-699)CTC>CTT	p.L233L	PAX8_uc010yxu.1_Silent_p.L233L|PAX8_uc010yxv.1_Silent_p.L233L|PAX8_uc002tjm.2_Silent_p.L233L|PAX8_uc002tjn.2_Silent_p.L233L|PAX8_uc010fku.1_Silent_p.L233L|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	233					branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						CGAGCGGCTCGAGGTGGTGCT	0.627			T	PPARG	follicular thyroid		Thyroid dysgenesis 						24	24					0	0	1	0	0
PAX8	7849	broad.mit.edu	37	2	113999622	113999622	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113999622G>A	uc010yxt.1	-	6	730	c.564C>T	c.(562-564)ATC>ATT	p.I188I	PAX8_uc010yxu.1_Silent_p.I188I|PAX8_uc010yxv.1_Silent_p.I188I|PAX8_uc002tjm.2_Silent_p.I188I|PAX8_uc002tjn.2_Silent_p.I188I|PAX8_uc010fku.1_Silent_p.I188I|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	188					branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						CAGGCTGAGCGATGCCCAGGA	0.617			T	PPARG	follicular thyroid		Thyroid dysgenesis 						9	19					0	0	1	0	0
PAX8	7849	broad.mit.edu	37	2	113999705	113999705	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:113999705G>A	uc010yxt.1	-	6	647	c.481C>T	c.(481-483)CCC>TCC	p.P161S	PAX8_uc010yxu.1_Missense_Mutation_p.P161S|PAX8_uc010yxv.1_Missense_Mutation_p.P161S|PAX8_uc002tjm.2_Missense_Mutation_p.P161S|PAX8_uc002tjn.2_Missense_Mutation_p.P161S|PAX8_uc010fku.1_Missense_Mutation_p.P161S|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	161					branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						GCTGAGCTGGGGACTGCAGTG	0.642			T	PPARG	follicular thyroid		Thyroid dysgenesis 						13	15					0	0	1	0	0
RABL2A	11159	broad.mit.edu	37	2	114398531	114398531	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:114398531C>T	uc002tkn.3	+	6	572	c.358C>T	c.(358-360)CGG>TGG	p.R120W	RABL2A_uc010flb.2_Missense_Mutation_p.R120W|RABL2A_uc002tkl.3_Intron|RABL2A_uc002tkm.3_Intron|RABL2A_uc002tks.3_Missense_Mutation_p.R120W|RABL2A_uc002tkr.2_Missense_Mutation_p.R120W|RABL2A_uc002tkp.3_Missense_Mutation_p.R120W	NM_007082	NP_009013	Q9UBK7	RBL2A_HUMAN	RAB, member of RAS oncogene family-like 2A	120					small GTPase mediated signal transduction		GTP binding|GTPase activity			skin(1)	1						TACAGAGCTTCGGGAGTTCAG	0.512													22	55					0	0	1	0	0
ACTR3	10096	broad.mit.edu	37	2	114670797	114670797	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:114670797C>T	uc002tkx.1	+	2	413	c.93C>T	c.(91-93)ATC>ATT	p.I31I	ACTR3_uc010yyc.1_Missense_Mutation_p.S11F|ACTR3_uc010yyd.1_5'UTR	NM_005721	NP_005712	P61158	ARP3_HUMAN	ARP3 actin-related protein 3 homolog	31					cellular component movement|cilium morphogenesis	Arp2/3 protein complex	actin binding|ATP binding			skin(1)	1						AGTTTATCATCCCTTCCTGTA	0.294													24	71					0	0	1	0	0
DPP10	57628	broad.mit.edu	37	2	116548684	116548684	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:116548684T>G	uc002tla.1	+	18	2016	c.1559T>G	c.(1558-1560)ATG>AGG	p.M520R	DPP10_uc002tlb.1_Missense_Mutation_p.M470R|DPP10_uc002tlc.1_Missense_Mutation_p.M516R|DPP10_uc002tle.2_Missense_Mutation_p.M524R|DPP10_uc002tlf.1_Missense_Mutation_p.M513R	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	520	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AGCAATTCTATGCTGAAGGAA	0.328													14	48					0	0	1	0	0
DPP10	57628	broad.mit.edu	37	2	116548868	116548868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:116548868C>T	uc002tla.1	+	19	2093	c.1636C>T	c.(1636-1638)CCT>TCT	p.P546S	DPP10_uc002tlb.1_Missense_Mutation_p.P496S|DPP10_uc002tlc.1_Missense_Mutation_p.P542S|DPP10_uc002tle.2_Missense_Mutation_p.P550S|DPP10_uc002tlf.1_Missense_Mutation_p.P539S	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	546	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AAAAGAACTTCCTTTACAGTT	0.313													43	104					0	0	1	0	0
DPP10	57628	broad.mit.edu	37	2	116599799	116599799	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:116599799G>T	uc002tla.1	+	26	2726	c.2269G>T	c.(2269-2271)GAA>TAA	p.E757*	DPP10_uc002tlb.1_Nonsense_Mutation_p.E707*|DPP10_uc002tlc.1_Nonsense_Mutation_p.E753*|DPP10_uc002tle.2_Nonsense_Mutation_p.E761*|DPP10_uc002tlf.1_Nonsense_Mutation_p.E750*	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	757	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CTACCCAGATGAAGGTCATAA	0.383													11	48					1.08611e-07	1.08873e-07	1	1	0
CCDC93	54520	broad.mit.edu	37	2	118753046	118753046	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:118753046G>A	uc002tlj.2	-	6	621	c.495C>T	c.(493-495)GCC>GCT	p.A165A	CCDC93_uc010fld.1_Silent_p.A165A	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	165										large_intestine(1)|ovary(1)	2						CTGTCTTGATGGCCTTTTCTT	0.433													37	99					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119699940	119699940	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:119699940C>T	uc002tln.1	+	1	196	c.64C>T	c.(64-66)CAC>TAC	p.H22Y	MARCO_uc010yyf.1_5'UTR	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	22	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGCTGCTTTTCACCAAATTGC	0.423													22	91					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119727714	119727715	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:119727714_119727715GG>AA	uc002tln.1	+	3	356_357	c.224_225GG>AA	c.(223-225)CGG>CAA	p.R75Q	MARCO_uc010yyf.1_5'UTR	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	75	Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GCGCGGCTCCGGGTCCTGGAGA	0.564													19	75					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119729101	119729101	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:119729101G>A	uc002tln.1	+	4	583	c.451G>A	c.(451-453)GGC>AGC	p.G151S	MARCO_uc010yyf.1_Missense_Mutation_p.G73S	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	151	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity	p.G151G(1)		ovary(3)|skin(2)|central_nervous_system(1)	6						AGGTGAACAAGGCGCCCCAGG	0.582													39	88					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119731983	119731983	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:119731983G>A	uc002tln.1	+	5	667	c.535G>A	c.(535-537)GCC>ACC	p.A179T	MARCO_uc010yyf.1_Missense_Mutation_p.A101T	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	179	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TGAGAAGGGAGCCAAGGGGGC	0.562													5	13					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119738993	119738993	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:119738993G>A	uc002tln.1	+	9	907	c.775G>A	c.(775-777)GGG>AGG	p.G259R	MARCO_uc010yyf.1_Missense_Mutation_p.G181R	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	259	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGGAAGCAAAGGGGACAGGGG	0.562													10	24					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119750052	119750052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:119750052G>A	uc002tln.1	+	15	1384	c.1252G>A	c.(1252-1254)GGT>AGT	p.G418S	MARCO_uc010yyf.1_Missense_Mutation_p.G340S	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	418	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGGTGAAAGAGGTAATCACTA	0.413													10	45					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119750854	119750854	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:119750854G>A	uc002tln.1	+	16	1539	c.1407G>A	c.(1405-1407)AGG>AGA	p.R469R	MARCO_uc010yyf.1_Silent_p.R391R	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	469	SRCR.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						CCAAAGGAAGGGCCCTGTACA	0.542													27	97					0	0	1	0	0
STEAP3	55240	broad.mit.edu	37	2	120005392	120005392	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120005392G>A	uc002tlp.2	+	4	787	c.630G>A	c.(628-630)CCG>CCA	p.P210P	STEAP3_uc002tlq.2_Silent_p.P220P|STEAP3_uc002tlr.2_Silent_p.P210P|STEAP3_uc010fle.2_Silent_p.P210P	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	210	Helical; (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						GCCTCCTCCCGGCCTGGAAGG	0.657													16	53					0	0	1	0	0
C2orf76	130355	broad.mit.edu	37	2	120097505	120097505	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120097505G>A	uc002tls.2	-	3	572	c.31C>T	c.(31-33)CGC>TGC	p.R11C	C2orf76_uc010flf.1_Missense_Mutation_p.R11C|C2orf76_uc010yyg.1_RNA|C2orf76_uc002tlt.2_Missense_Mutation_p.R11C|C2orf76_uc002tlu.2_Missense_Mutation_p.R11C	NM_001017927	NP_001017927	Q3KRA6	CB076_HUMAN	hypothetical protein LOC130355	11											0						CGGATGAGGCGAACTGTGATG	0.433													17	60					0	0	1	0	0
SCTR	6344	broad.mit.edu	37	2	120197765	120197765	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120197765G>A	uc002tma.2	-	13	1477	c.1251C>T	c.(1249-1251)GCC>GCT	p.A417A	SCTR_uc002tlz.2_Silent_p.A239A	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	417	Cytoplasmic (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	TGCTGAAGGAGGCCACGGGGT	0.637													5	25					0	0	1	0	0
PCDP1	200373	broad.mit.edu	37	2	120369247	120369247	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120369247A>T	uc002tmb.2	+	14	1474	c.382A>T	c.(382-384)ATT>TTT	p.I128F	PCDP1_uc010yyq.1_Missense_Mutation_p.I258F	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	414						cilium	calmodulin binding				0	Colorectal(110;0.196)					AGGAGATCCTATTTTGGATGA	0.333													28	72					0	0	1	0	0
PCDP1	200373	broad.mit.edu	37	2	120369297	120369297	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120369297G>A	uc002tmb.2	+	14	1524	c.432G>A	c.(430-432)CGG>CGA	p.R144R	PCDP1_uc010yyq.1_Silent_p.R274R	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	430						cilium	calmodulin binding				0	Colorectal(110;0.196)					GCCATAAACGGGTTGTTCGCA	0.328													13	71					0	0	1	0	0
PCDP1	200373	broad.mit.edu	37	2	120387522	120387522	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120387522C>T	uc002tmb.2	+	18	1956	c.864C>T	c.(862-864)TTC>TTT	p.F288F	PCDP1_uc010yyq.1_Silent_p.F418F	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	574						cilium	calmodulin binding				0	Colorectal(110;0.196)					ATTCCTTCTTCAATCTGCAGG	0.333													25	47					0	0	1	0	0
TMEM177	80775	broad.mit.edu	37	2	120438714	120438714	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120438714C>T	uc010flg.1	+	2	758	c.285C>T	c.(283-285)TTC>TTT	p.F95F	TMEM177_uc002tme.2_Intron|TMEM177_uc002tmc.1_Silent_p.F95F|TMEM177_uc002tmd.2_Silent_p.F95F|TMEM177_uc010flh.2_Intron	NM_001105198	NP_001098668	Q53S58	TM177_HUMAN	transmembrane protein 177	95						integral to membrane				ovary(1)	1	Colorectal(110;0.196)					GTGCAGGCTTCCCAAGACTCC	0.547													111	235					0	0	1	0	0
EPB41L5	57669	broad.mit.edu	37	2	120889255	120889255	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120889255C>T	uc002tmg.2	+	18	1689	c.1563C>T	c.(1561-1563)TCC>TCT	p.S521S	EPB41L5_uc010fll.2_Silent_p.S521S|EPB41L5_uc010flm.2_Silent_p.S325S	NM_020909	NP_065960	Q9HCM4	E41L5_HUMAN	erythrocyte membrane protein band 4.1 like 5	521						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1						CTTTGCTGTCCCCTCGATCCA	0.413													20	71					0	0	1	0	0
EPB41L5	57669	broad.mit.edu	37	2	120903838	120903838	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120903838C>T	uc002tmg.2	+	20	1892	c.1766C>T	c.(1765-1767)GCC>GTC	p.A589V	EPB41L5_uc010fll.2_Missense_Mutation_p.A589V|EPB41L5_uc010flm.2_Missense_Mutation_p.A393V	NM_020909	NP_065960	Q9HCM4	E41L5_HUMAN	erythrocyte membrane protein band 4.1 like 5	589						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1						CATAAAAATGCCAATGTTCAG	0.294													14	28					0	0	1	0	0
EPB41L5	57669	broad.mit.edu	37	2	120903846	120903846	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120903846C>T	uc002tmg.2	+	20	1900	c.1774C>T	c.(1774-1776)CAG>TAG	p.Q592*	EPB41L5_uc010fll.2_Nonsense_Mutation_p.Q592*|EPB41L5_uc010flm.2_Nonsense_Mutation_p.Q396*	NM_020909	NP_065960	Q9HCM4	E41L5_HUMAN	erythrocyte membrane protein band 4.1 like 5	592						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1						TGCCAATGTTCAGGATGCTGC	0.308													12	31					0	0	1	0	0
EPB41L5	57669	broad.mit.edu	37	2	120922487	120922487	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:120922487G>A	uc002tmg.2	+	22	2088	c.1962_splice	c.e22+1	p.Q654_splice	EPB41L5_uc010fll.2_Splice_Site_p.Q654_splice|EPB41L5_uc010flm.2_Splice_Site_p.Q458_splice	NM_020909	NP_065960	Q9HCM4	E41L5_HUMAN	erythrocyte membrane protein band 4.1 like 5							cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1						TGCACCTCAGGTAAATATGCT	0.328													25	67					0	0	1	0	0
INHBB	3625	broad.mit.edu	37	2	121106698	121106698	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:121106698C>T	uc002tmn.2	+	2	518	c.472C>T	c.(472-474)CGC>TGC	p.R158C		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	158					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				CTCCCGGGTCCGCCTATACTT	0.557													31	66					0	0	1	0	0
INHBB	3625	broad.mit.edu	37	2	121107018	121107018	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:121107018C>T	uc002tmn.2	+	2	838	c.792C>T	c.(790-792)TTC>TTT	p.F264F		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	264					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				TGCCGGTGTTCGTGGACCCAG	0.667													37	91					0	0	1	0	0
INHBB	3625	broad.mit.edu	37	2	121107034	121107034	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:121107034G>A	uc002tmn.2	+	2	854	c.808G>A	c.(808-810)GAG>AAG	p.E270K		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	270					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				CCCAGGCGAAGAGTCGCACCG	0.672													36	81					0	0	1	0	0
INHBB	3625	broad.mit.edu	37	2	121107038	121107038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:121107038C>T	uc002tmn.2	+	2	858	c.812C>T	c.(811-813)TCG>TTG	p.S271L		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	271					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				GGCGAAGAGTCGCACCGGCCC	0.662													17	94					0	0	1	0	0
GLI2	2736	broad.mit.edu	37	2	121708823	121708823	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:121708823C>T	uc010flp.2	+	3	289	c.259C>T	c.(259-261)CCT>TCT	p.P87S	GLI2_uc010yyu.1_Missense_Mutation_p.P87S|GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Intron|GLI2_uc010flo.1_5'UTR|GLI2_uc002tmw.1_Missense_Mutation_p.P87S	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	87					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CTGCAGGCCCCCTGCCCTCAG	0.632													36	236					0	0	1	0	0
GLI2	2736	broad.mit.edu	37	2	121745926	121745926	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:121745926G>A	uc010flp.2	+	13	2466	c.2436G>A	c.(2434-2436)ACG>ACA	p.T812T	GLI2_uc002tmq.1_Silent_p.T484T|GLI2_uc002tmr.1_Silent_p.T467T|GLI2_uc002tmt.3_Silent_p.T484T|GLI2_uc002tmu.3_Silent_p.T467T	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	812	Ser-rich.				axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CCACCAGCACGGTCAGCTCGG	0.701													9	17					0	0	1	0	0
GLI2	2736	broad.mit.edu	37	2	121747721	121747721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:121747721G>A	uc010flp.2	+	13	4261	c.4231G>A	c.(4231-4233)GAA>AAA	p.E1411K	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Missense_Mutation_p.E1083K|GLI2_uc002tmu.3_Missense_Mutation_p.E1066K	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1411					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GTCCAGTCAGGAAACAGCAGA	0.697													11	35					0	0	1	0	0
GLI2	2736	broad.mit.edu	37	2	121747930	121747930	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:121747930G>A	uc010flp.2	+	13	4470	c.4440G>A	c.(4438-4440)CAG>CAA	p.Q1480Q	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Silent_p.Q1152Q|GLI2_uc002tmu.3_Silent_p.Q1135Q	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1480					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				AGGCCTGTCAGGACAGCATCC	0.632													34	100					0	0	1	0	0
TFCP2L1	29842	broad.mit.edu	37	2	122007186	122007186	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:122007186C>T	uc002tmx.2	-	3	345	c.252G>A	c.(250-252)AAG>AAA	p.K84K	TFCP2L1_uc010flr.2_Silent_p.K84K	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	84					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					AGTCTCCCAGCTTCCGATTCT	0.458													30	75					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	124979297	124979297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:124979297C>T	uc002tno.2	+	2	462	c.98C>T	c.(97-99)CCA>CTA	p.P33L	CNTNAP5_uc010flu.2_Missense_Mutation_p.P33L	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	33	F5/8 type C.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TGTGATGATCCACTAGCATCC	0.448													4	14					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125175031	125175031	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:125175031A>G	uc002tno.2	+	4	757	c.393A>G	c.(391-393)GGA>GGG	p.G131G	CNTNAP5_uc010flu.2_Silent_p.G131G	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	131	F5/8 type C.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CCTTTGCAGGAAACATGAATG	0.488													8	26					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125192248	125192248	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:125192248C>T	uc002tno.2	+	5	1081	c.717C>T	c.(715-717)GCC>GCT	p.A239A	CNTNAP5_uc010flu.2_Silent_p.A239A	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	239	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GGAGGCTCGCCCTACACCTCA	0.537													4	15					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125284948	125284948	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:125284948C>T	uc002tno.2	+	10	1925	c.1561C>T	c.(1561-1563)CAG>TAG	p.Q521*	CNTNAP5_uc010flu.2_Nonsense_Mutation_p.Q522*	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	521	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TATTGATAACCAGCCCAAGGA	0.443													31	77					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125405466	125405466	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:125405466G>A	uc002tno.2	+	13	2369	c.2005G>A	c.(2005-2007)GAC>AAC	p.D669N	CNTNAP5_uc010flu.2_Missense_Mutation_p.D670N	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	669	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GGCCGTGATCGACGGCTCTGA	0.632													6	19					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125530386	125530386	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:125530386G>A	uc002tno.2	+	17	2905	c.2541G>A	c.(2539-2541)GAG>GAA	p.E847E	CNTNAP5_uc010flu.2_Silent_p.E848E	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	847	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CTCCTTCAGAGATCACCTTTG	0.488													17	68					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125555795	125555795	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:125555795G>A	uc002tno.2	+	19	3476	c.3112G>A	c.(3112-3114)GAA>AAA	p.E1038K	CNTNAP5_uc010flu.2_Missense_Mutation_p.E1039K	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	1038	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TCCATCCAAGGAAAACATTGC	0.438													20	35					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125555862	125555862	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:125555862C>T	uc002tno.2	+	19	3543	c.3179C>T	c.(3178-3180)TCT>TTT	p.S1060F	CNTNAP5_uc010flu.2_Missense_Mutation_p.S1061F	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	1060	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		AATTCTTCTTCTCAGGACTTC	0.498													7	49					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125671718	125671718	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:125671718G>A	uc002tno.2	+	24	4138	c.3774G>A	c.(3772-3774)ATG>ATA	p.M1258I	CNTNAP5_uc010flu.2_Missense_Mutation_p.M1259I	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	1258	Helical; (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TCGGCATCATGACCCGGTTCC	0.453													60	123					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125671766	125671766	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:125671766G>A	uc002tno.2	+	24	4186	c.3822G>A	c.(3820-3822)ATG>ATA	p.M1274I	CNTNAP5_uc010flu.2_Missense_Mutation_p.M1275I	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	1274	Cytoplasmic (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CGAGCCAGATGAAGGAGAAGG	0.443													38	86					0	0	1	0	0
CYP27C1	339761	broad.mit.edu	37	2	127944882	127944882	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:127944882C>T	uc002tod.2	-	8	1215	c.1084G>A	c.(1084-1086)GGG>AGG	p.G362R		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	362						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		TGGATGGGCCCCCCTGGCGTC	0.473													33	60					0	0	1	0	0
CYP27C1	339761	broad.mit.edu	37	2	127944915	127944915	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:127944915G>A	uc002tod.2	-	8	1182	c.1051C>T	c.(1051-1053)CAT>TAT	p.H351Y		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	351						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		GTTTTTGCATGAACAGCATTG	0.453													34	71					0	0	1	0	0
CYP27C1	339761	broad.mit.edu	37	2	127958729	127958729	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:127958729G>A	uc002tod.2	-	3	488	c.357C>T	c.(355-357)TTC>TTT	p.F119F		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	119						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		AGGACCTGCAGAATTCCCGCC	0.522													12	187					0	0	1	0	0
CYP27C1	339761	broad.mit.edu	37	2	127961109	127961109	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:127961109C>T	uc002tod.2	-	2	148	c.17G>A	c.(16-18)AGA>AAA	p.R6K		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	6						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		AATTCTTTGTCTCAATACGCT	0.398													24	187					0	0	1	0	0
ERCC3	2071	broad.mit.edu	37	2	128029016	128029016	+	Missense_Mutation	SNP	G	A	A	rs139049289		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128029016G>A	uc002toh.1	-	12	1936	c.1841C>T	c.(1840-1842)TCG>TTG	p.S614L	ERCC3_uc002toe.1_Missense_Mutation_p.S369L|ERCC3_uc002tof.1_Missense_Mutation_p.S550L|ERCC3_uc002tog.1_Missense_Mutation_p.S550L	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	614	Helicase C-terminal.				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		CAGATCAAACGAAGTGTCACC	0.423			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				55	119					0	0	1	0	0
PROC	5624	broad.mit.edu	37	2	128177561	128177561	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128177561G>A	uc002tok.2	+	2	116	c.43G>A	c.(43-45)GGA>AGA	p.G15R	PROC_uc002tol.2_Missense_Mutation_p.G36R|PROC_uc010yzi.1_Missense_Mutation_p.G36R|PROC_uc010yzj.1_5'UTR|PROC_uc010yzk.1_Missense_Mutation_p.G36R|PROC_uc002tom.2_Missense_Mutation_p.G15R	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	15					blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	GGCCACCTGGGGAATTTCCGG	0.642													18	50					0	0	1	0	0
PROC	5624	broad.mit.edu	37	2	128178990	128178990	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128178990G>A	uc002tok.2	+	3	275	c.202G>A	c.(202-204)GAG>AAG	p.E68K	PROC_uc002tol.2_Missense_Mutation_p.E89K|PROC_uc010yzi.1_Missense_Mutation_p.E89K|PROC_uc010yzj.1_5'UTR|PROC_uc010yzk.1_Missense_Mutation_p.E89K|PROC_uc002tom.2_Missense_Mutation_p.E68K	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	68	Gla.				blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	TGACTTCGAGGAGGCCAAGGA	0.587													17	40					0	0	1	0	0
PROC	5624	broad.mit.edu	37	2	128186115	128186115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128186115G>A	uc002tok.2	+	9	1052	c.979G>A	c.(979-981)GAG>AAG	p.E327K	PROC_uc002tol.2_Missense_Mutation_p.E348K|PROC_uc010yzi.1_Missense_Mutation_p.E383K|PROC_uc010yzj.1_Missense_Mutation_p.E222K|PROC_uc010yzk.1_Missense_Mutation_p.E382K|PROC_uc002tom.2_Missense_Mutation_p.E361K	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	327	Peptidase S1.				blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	CGGCCTTGCAGAGCGCGAGCT	0.657													45	136					0	0	1	0	0
PROC	5624	broad.mit.edu	37	2	128186496	128186496	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128186496G>A	uc002tok.2	+	9	1433	c.1360G>A	c.(1360-1362)GCC>ACC	p.A454T	PROC_uc002tol.2_Missense_Mutation_p.A475T|PROC_uc010yzi.1_Missense_Mutation_p.A510T|PROC_uc010yzj.1_Missense_Mutation_p.A349T|PROC_uc010yzk.1_Missense_Mutation_p.A509T|PROC_uc002tom.2_Missense_Mutation_p.A488T	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	454					blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	AGACAAGGAAGCCCCCCAGAA	0.577													10	115					0	0	1	0	0
MYO7B	4648	broad.mit.edu	37	2	128324308	128324308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128324308C>T	uc002top.2	+	5	429	c.376C>T	c.(376-378)CAT>TAT	p.H126Y		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	126	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CTACAGCCGCCATATGGGCGA	0.582													7	24					0	0	1	0	0
MYO7B	4648	broad.mit.edu	37	2	128335798	128335798	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128335798G>A	uc002top.2	+	9	993	c.940G>A	c.(940-942)GAG>AAG	p.E314K		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	314	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CTCCGACTCCGAGAGCTGGGA	0.607													10	32					0	0	1	0	0
MYO7B	4648	broad.mit.edu	37	2	128341841	128341841	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128341841G>A	uc002top.2	+	13	1541	c.1488G>A	c.(1486-1488)CTG>CTA	p.L496L		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	496	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GGCCCACCCTGGACCTGCTGG	0.587													16	60					0	0	1	0	0
MYO7B	4648	broad.mit.edu	37	2	128342354	128342354	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128342354G>A	uc002top.2	+	14	1609	c.1556G>A	c.(1555-1557)GGG>GAG	p.G519E		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	519	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		TTCTTCCAGGGGACAGATCTC	0.567													31	65					0	0	1	0	0
MYO7B	4648	broad.mit.edu	37	2	128342409	128342409	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128342409C>T	uc002top.2	+	14	1664	c.1611C>T	c.(1609-1611)GCC>GCT	p.A537A		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	537	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		ACAACAAGGCCTTCCTACAGC	0.557													23	110					0	0	1	0	0
WDR33	55339	broad.mit.edu	37	2	128463994	128463994	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128463994C>T	uc002tpg.1	-	22	4097	c.3914G>A	c.(3913-3915)CGA>CAA	p.R1305Q		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	1305					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		CCGGCCCCCTCGAGAAGGGGT	0.617													32	204					0	0	1	0	0
WDR33	55339	broad.mit.edu	37	2	128477162	128477162	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128477162G>A	uc002tpg.1	-	16	2620	c.2437C>T	c.(2437-2439)CCT>TCT	p.P813S		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	813					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		GGAGGGTGAGGTCCTCTCATC	0.617													12	40					0	0	1	0	0
WDR33	55339	broad.mit.edu	37	2	128477498	128477498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128477498G>A	uc002tpg.1	-	16	2284	c.2101C>T	c.(2101-2103)CCT>TCT	p.P701S		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	701	Collagen-like.				postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		TGACCTTGAGGACCAGAACTA	0.642													15	81					0	0	1	0	0
SAP130	79595	broad.mit.edu	37	2	128753978	128753978	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128753978G>A	uc002tpp.2	-	11	1511	c.1379C>T	c.(1378-1380)TCC>TTC	p.S460F	SAP130_uc002tpn.2_Missense_Mutation_p.S221F|SAP130_uc002tpo.2_Missense_Mutation_p.S205F|SAP130_uc010fmd.2_Missense_Mutation_p.S460F|SAP130_uc002tpq.1_Missense_Mutation_p.S433F	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	460					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		CCGATGTCCGGAGATGGGAAT	0.552													9	104					0	0	1	0	0
SAP130	79595	broad.mit.edu	37	2	128775310	128775310	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128775310G>A	uc002tpp.2	-	3	502	c.370C>T	c.(370-372)CCG>TCG	p.P124S	SAP130_uc002tpo.2_5'Flank|SAP130_uc010fmd.2_Missense_Mutation_p.P124S|SAP130_uc002tpq.1_Missense_Mutation_p.P98S	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	124	Pro-rich.				histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		TGTGCTGGCGGGGCTGTCACT	0.537													8	75					0	0	1	0	0
UGGT1	56886	broad.mit.edu	37	2	128865607	128865607	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128865607C>T	uc002tps.2	+	4	551	c.373C>T	c.(373-375)CGT>TGT	p.R125C	UGGT1_uc010fme.1_Intron|UGGT1_uc002tpr.2_Missense_Mutation_p.R101C	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	125					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TCTGTCCCTTCGTTCTTACTC	0.433													51	102					0	0	1	0	0
UGGT1	56886	broad.mit.edu	37	2	128873892	128873892	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128873892C>T	uc002tps.2	+	8	1025	c.847C>T	c.(847-849)CAG>TAG	p.Q283*	UGGT1_uc010fme.1_Nonsense_Mutation_p.Q158*|UGGT1_uc002tpr.2_Nonsense_Mutation_p.Q259*	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	283					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TGATGAGGTTCAGGGGTTCCT	0.353													25	69					0	0	1	0	0
UGGT1	56886	broad.mit.edu	37	2	128928849	128928849	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:128928849C>T	uc002tps.2	+	28	3273	c.3095C>T	c.(3094-3096)CCT>CTT	p.P1032L	UGGT1_uc010fme.1_Missense_Mutation_p.P907L|UGGT1_uc002tpr.2_Missense_Mutation_p.P1008L	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	1032					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TCTGACATGCCTTTAAAAAGG	0.338													13	40					0	0	1	0	0
RAB6C	84084	broad.mit.edu	37	2	130738443	130738443	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130738443C>T	uc002tpx.1	+	1	1209	c.755C>T	c.(754-756)TCG>TTG	p.S252L	uc002tpw.1_5'Flank	NM_032144	NP_115520	Q9H0N0	RAB6C_HUMAN	RAB6C, member RAS oncogene family	252					protein transport|response to drug|small GTPase mediated signal transduction		GTP binding|GTPase activity			lung(1)	1	Colorectal(110;0.1)					CTGCCTGTCTCGTGGAGGTGA	0.373													31	84					0	0	1	0	0
LOC440905	440905	broad.mit.edu	37	2	130792786	130792786	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130792786C>T	uc002tpz.2	-	8		c.2543G>A				NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						AATTAAGTCTCCCACAGCCAT	0.468													19	30					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130832813	130832813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130832813C>T	uc010fmh.2	-	17	2632	c.2232G>A	c.(2230-2232)ATG>ATA	p.M744I		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	744	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						GCATGCCCCCCATCATGCCCT	0.622													39	77					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130833139	130833139	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130833139G>A	uc010fmh.2	-	17	2306	c.1906C>T	c.(1906-1908)CTT>TTT	p.L636F		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	636						cell cortex	ATP binding			skin(3)|ovary(2)	5						TTACAACTAAGAGAAAGCTAA	0.323													7	30					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130865584	130865584	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130865584G>A	uc010fmh.2	-	8	1524	c.1124C>T	c.(1123-1125)CCA>CTA	p.P375L		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	375						cell cortex	ATP binding			skin(3)|ovary(2)	5						AGTCTTACCTGGATTGCTGTT	0.194													10	62					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130877816	130877816	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130877816C>T	uc010fmh.2	-	3	673	c.273G>A	c.(271-273)ATG>ATA	p.M91I		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	91						cell cortex	ATP binding			skin(3)|ovary(2)	5						TGAGTGTCTTCATAGCAGAGT	0.617													38	340					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130877827	130877827	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130877827C>T	uc010fmh.2	-	3	662	c.262G>A	c.(262-264)GAC>AAC	p.D88N		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	88						cell cortex	ATP binding			skin(3)|ovary(2)	5						ATAGCAGAGTCGTCGTGGTCT	0.617													21	371					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130878039	130878039	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130878039G>A	uc010fmh.2	-	3	450	c.50C>T	c.(49-51)CCA>CTA	p.P17L		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	17						cell cortex	ATP binding			skin(3)|ovary(2)	5						GAGACCAAATGGCTTCTTCAC	0.562													18	184					0	0	1	0	0
CCDC74B	91409	broad.mit.edu	37	2	130897787	130897787	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130897787C>T	uc002tqm.1	-	5	903	c.841G>A	c.(841-843)GAG>AAG	p.E281K	CCDC74B_uc010yzw.1_Missense_Mutation_p.E383K|CCDC74B_uc002tqn.1_Missense_Mutation_p.E215K	NM_207310	NP_997193	Q96LY2	CC74B_HUMAN	coiled-coil domain containing 74B	281											0	Colorectal(110;0.1)					TTCCACAGCTCGCGGATGAGC	0.682													19	67					0	0	1	0	0
SMPD4	55627	broad.mit.edu	37	2	130911970	130911970	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130911970G>A	uc002tqq.1	-	16	2176	c.1656C>T	c.(1654-1656)TTC>TTT	p.F552F	SMPD4_uc002tqo.1_Silent_p.F84F|SMPD4_uc002tqp.1_Silent_p.F291F|SMPD4_uc010yzy.1_Silent_p.F301F|SMPD4_uc010yzz.1_Silent_p.F216F|SMPD4_uc002tqr.1_Silent_p.F523F|SMPD4_uc002tqs.1_Silent_p.F420F|SMPD4_uc002tqt.1_Silent_p.F401F|SMPD4_uc010zaa.1_Silent_p.F410F|SMPD4_uc010zab.1_Silent_p.F450F|SMPD4_uc010zac.1_Silent_p.F293F|SMPD4_uc010zad.1_Silent_p.F188F	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	513					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	AGGGTGACAGGAAGCTCCCAG	0.607													6	11					0	0	1	0	0
SMPD4	55627	broad.mit.edu	37	2	130932542	130932542	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130932542G>A	uc002tqq.1	-	3	708	c.188C>T	c.(187-189)CCC>CTC	p.P63L	SMPD4_uc002tqp.1_5'Flank|SMPD4_uc010yzy.1_Missense_Mutation_p.P63L|SMPD4_uc010yzz.1_Intron|SMPD4_uc002tqr.1_Missense_Mutation_p.P63L|SMPD4_uc002tqs.1_5'UTR|SMPD4_uc002tqt.1_5'UTR|SMPD4_uc010zaa.1_5'UTR|SMPD4_uc010zab.1_Missense_Mutation_p.P63L|SMPD4_uc010zac.1_Intron|SMPD4_uc010zad.1_Intron	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	24					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	CTGTGCAAAGGGCTTATTTAT	0.443													41	105					0	0	1	0	0
TUBA3E	112714	broad.mit.edu	37	2	130952776	130952776	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:130952776C>T	uc002tqv.2	-	3	352	c.251G>A	c.(250-252)AGG>AAG	p.R84K		NM_207312	NP_997195	Q6PEY2	TBA3E_HUMAN	tubulin, alpha 3e	84					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1	Colorectal(110;0.1)					GAAGAGCTGCCTGTAGGTCCC	0.507													42	149					0	0	1	0	0
CFC1B	653275	broad.mit.edu	37	2	131356248	131356248	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131356248C>T	uc002tro.1	-	3	605	c.214G>A	c.(214-216)GAG>AAG	p.E72K		NM_001079530	NP_001072998	P0CG36	CFC1B_HUMAN	cripto, FRL-1, cryptic family 1B	72					gastrulation	extracellular region					0	Colorectal(110;0.1)					GGGAGCGGCTCCTCCGGCCCC	0.627													20	135					0	0	1	0	0
GPR148	344561	broad.mit.edu	37	2	131487659	131487659	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131487659C>T	uc002trv.1	+	1	937	c.935C>T	c.(934-936)CCC>CTC	p.P312L		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	312	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					ATGATGCTTCCCCGTGCCATG	0.592													16	54					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131519662	131519662	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131519662G>A	uc002trw.2	+	2	207	c.17G>A	c.(16-18)GGA>GAA	p.G6E	FAM123C_uc010fmv.2_Missense_Mutation_p.G6E|FAM123C_uc010fms.1_Missense_Mutation_p.G6E|FAM123C_uc010fmt.1_Missense_Mutation_p.G6E|FAM123C_uc010fmu.1_Missense_Mutation_p.G6E	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	6										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CTGAAGAGAGGAAAGACCTTC	0.622													3	16					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131519752	131519752	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131519752C>T	uc002trw.2	+	2	297	c.107C>T	c.(106-108)CCC>CTC	p.P36L	FAM123C_uc010fmv.2_Missense_Mutation_p.P36L|FAM123C_uc010fms.1_Missense_Mutation_p.P36L|FAM123C_uc010fmt.1_Missense_Mutation_p.P36L|FAM123C_uc010fmu.1_Missense_Mutation_p.P36L	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	36										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGGACAGGCCCCTGGTCAGTC	0.622													3	10					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131519878	131519878	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131519878C>T	uc002trw.2	+	2	423	c.233C>T	c.(232-234)CCC>CTC	p.P78L	FAM123C_uc010fmv.2_Missense_Mutation_p.P78L|FAM123C_uc010fms.1_Missense_Mutation_p.P78L|FAM123C_uc010fmt.1_Missense_Mutation_p.P78L|FAM123C_uc010fmu.1_Missense_Mutation_p.P78L	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	78										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		AAAGGGGGACCCGCAGCCCTC	0.652													7	10					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131520004	131520004	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131520004C>T	uc002trw.2	+	2	549	c.359C>T	c.(358-360)TCC>TTC	p.S120F	FAM123C_uc010fmv.2_Missense_Mutation_p.S120F|FAM123C_uc010fms.1_Missense_Mutation_p.S120F|FAM123C_uc010fmt.1_Missense_Mutation_p.S120F|FAM123C_uc010fmu.1_Missense_Mutation_p.S120F	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	120										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		TTCCCGGGCTCCCCGGGCAGC	0.642													12	23					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131520248	131520248	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131520248C>T	uc002trw.2	+	2	793	c.603C>T	c.(601-603)TTC>TTT	p.F201F	FAM123C_uc010fmv.2_Silent_p.F201F|FAM123C_uc010fms.1_Silent_p.F201F|FAM123C_uc010fmt.1_Silent_p.F201F|FAM123C_uc010fmu.1_Silent_p.F201F	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	201										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GCAAAGCCTTCCTCCCCCCGG	0.687													20	47					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131520398	131520398	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131520398G>A	uc002trw.2	+	2	943	c.753G>A	c.(751-753)GGG>GGA	p.G251G	FAM123C_uc010fmv.2_Silent_p.G251G|FAM123C_uc010fms.1_Silent_p.G251G|FAM123C_uc010fmt.1_Silent_p.G251G|FAM123C_uc010fmu.1_Silent_p.G251G	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	251										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CGGGTTGTGGGGAGGTGTTCG	0.637													29	79					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131520981	131520981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131520981G>A	uc002trw.2	+	2	1526	c.1336G>A	c.(1336-1338)GAG>AAG	p.E446K	FAM123C_uc010fmv.2_Missense_Mutation_p.E446K|FAM123C_uc010fms.1_Missense_Mutation_p.E446K|FAM123C_uc010fmt.1_Missense_Mutation_p.E446K|FAM123C_uc010fmu.1_Missense_Mutation_p.E446K	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	446										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GTGCGTGTCTGAGAGTCTGTC	0.662													21	48					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131521621	131521621	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131521621G>A	uc002trw.2	+	2	2166	c.1976G>A	c.(1975-1977)AGG>AAG	p.R659K	FAM123C_uc010fmv.2_Missense_Mutation_p.R659K|FAM123C_uc010fms.1_Missense_Mutation_p.R659K|FAM123C_uc010fmt.1_Missense_Mutation_p.R659K|FAM123C_uc010fmu.1_Missense_Mutation_p.R659K	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	659										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGCCCCTGGAGGCCAGGTCAC	0.632													5	13					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131521956	131521956	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131521956G>A	uc002trw.2	+	2	2501	c.2311G>A	c.(2311-2313)GAG>AAG	p.E771K	FAM123C_uc010fmv.2_Missense_Mutation_p.E771K|FAM123C_uc010fms.1_Missense_Mutation_p.E771K|FAM123C_uc010fmt.1_Missense_Mutation_p.E771K|FAM123C_uc010fmu.1_Missense_Mutation_p.E771K	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	771										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGCCTCTGTGGAGGACCAGCC	0.677													8	19					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131522171	131522171	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131522171C>T	uc002trw.2	+	2	2716	c.2526C>T	c.(2524-2526)CTC>CTT	p.L842L	FAM123C_uc010fmv.2_Silent_p.L842L|FAM123C_uc010fms.1_Silent_p.L842L|FAM123C_uc010fmt.1_Silent_p.L842L|FAM123C_uc010fmu.1_Silent_p.L842L	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	842										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GTGAGGGCCTCCTCTGTGGCC	0.627													8	14					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	131976126	131976126	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131976126G>A	uc002tsn.2	+	1	203	c.151G>A	c.(151-153)GAC>AAC	p.D51N	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	51							ATP binding				0						AGACCACGACGACTCTGCTAT	0.597													24	340					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	131976248	131976248	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131976248G>A	uc002tsn.2	+	1	325	c.273G>A	c.(271-273)ATG>ATA	p.M91I	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	91							ATP binding				0						ACTCTGCTATGAAGACACTCA	0.617													18	83					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	131976432	131976432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:131976432C>T	uc002tsn.2	+	1	509	c.457C>T	c.(457-459)CCC>TCC	p.P153S	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	153							ATP binding				0						GGGTAAAGTCCCCAGAAAGGA	0.572													36	194					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	132010506	132010506	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132010506G>A	uc002tsn.2	+	13	1664	c.1612G>A	c.(1612-1614)GCT>ACT	p.A538T	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.A138T|POTEE_uc002tsl.2_Missense_Mutation_p.A120T|POTEE_uc010fmy.1_Missense_Mutation_p.A2T	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	538							ATP binding				0						AAATTTTATGGCTATCGAAGA	0.353													9	145					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	132021043	132021043	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132021043G>A	uc002tsn.2	+	15	2067	c.2015G>A	c.(2014-2016)AGA>AAA	p.R672K	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.R272K|POTEE_uc002tsl.2_Missense_Mutation_p.R254K|POTEE_uc010fmy.1_Missense_Mutation_p.R136K	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	672	Potential.						ATP binding				0						AGCCAGCTAAGAGAAAAGAAA	0.363													6	45					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	132021437	132021437	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132021437C>T	uc002tsn.2	+	15	2461	c.2409C>T	c.(2407-2409)ATC>ATT	p.I803I	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.I403I|POTEE_uc002tsl.2_Silent_p.I385I|POTEE_uc010fmy.1_Silent_p.I267I	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	803	Actin-like.						ATP binding				0						AGCACCCCATCCTGCTGACCG	0.587													66	161					0	0	1	0	0
PLEKHB2	55041	broad.mit.edu	37	2	132110631	132110631	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132110631G>A	uc002tsh.2	+	7	1022	c.462G>A	c.(460-462)ACG>ACA	p.T154T				Q96CS7	PKHB2_HUMAN	SubName: Full=Putative uncharacterized protein PLEKHB2;	Error:Variant_position_missing_in_Q96CS7_after_alignment						membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.0828)		ACACCACCACGAGTGCAAAAA	0.453													9	41					0	0	1	0	0
PLEKHB2	55041	broad.mit.edu	37	2	132110663	132110663	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132110663G>A	uc002tsh.2	+	7	1054	c.494G>A	c.(493-495)CGA>CAA	p.R165Q				Q96CS7	PKHB2_HUMAN	SubName: Full=Putative uncharacterized protein PLEKHB2;	Error:Variant_position_missing_in_Q96CS7_after_alignment						membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.0828)		CTCCCAACGCGATGTTTTTTT	0.448													13	26					0	0	1	0	0
PLEKHB2	55041	broad.mit.edu	37	2	132110674	132110674	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132110674C>T	uc002tsh.2	+	7	1065	c.505C>T	c.(505-507)CCC>TCC	p.P169S				Q96CS7	PKHB2_HUMAN	SubName: Full=Putative uncharacterized protein PLEKHB2;	Error:Variant_position_missing_in_Q96CS7_after_alignment						membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.0828)		ATGTTTTTTTCCCAGCGAATC	0.478													7	27					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132200739	132200739	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132200739C>T	uc002tst.2	-	1	1729	c.1263G>A	c.(1261-1263)GGG>GGA	p.G421G		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						CCTGAACCTTCCCAAGCAGCT	0.642													7	23					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132200786	132200786	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132200786C>T	uc002tst.2	-	1	1682	c.1216G>A	c.(1216-1218)GAG>AAG	p.E406K		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						ACCTTGCACTCCCGGAGGAAC	0.632													5	16					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132200894	132200894	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132200894C>T	uc002tst.2	-	1	1574	c.1108G>A	c.(1108-1110)GAG>AAG	p.E370K		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						TACAGCTGCTCCACCAGGCCG	0.627													5	15					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132200974	132200974	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132200974G>A	uc002tst.2	-	1	1494	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						GATGGGCTTGGAGCTCATGCG	0.612													9	20					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132201188	132201188	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132201188C>T	uc002tst.2	-	1	1280	c.814G>A	c.(814-816)GAA>AAA	p.E272K		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						TGGAGGGCTTCGCTGGGGCCC	0.572													15	24					0	0	1	0	0
TUBA3D	113457	broad.mit.edu	37	2	132237666	132237666	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132237666G>A	uc002tsu.3	+	4	507	c.400G>A	c.(400-402)GGC>AGC	p.G134S		NM_080386	NP_525125	Q13748	TBA3C_HUMAN	tubulin, alpha 3d	134					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(221;0.13)		AGGACTGCAGGGCTTCCTCAT	0.587													18	92					0	0	1	0	0
LOC150776	150776	broad.mit.edu	37	2	132277224	132277224	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132277224C>T	uc002tsz.3	+	2	681	c.234C>T	c.(232-234)CCC>CCT	p.P78P	LOC150776_uc002tsy.3_RNA					Homo sapiens cDNA FLJ41352 fis, clone BRAWH2014645.												0						TCCTTACGCCCCTGGGGCGGT	0.622													6	23					0	0	1	0	0
CCDC74A	90557	broad.mit.edu	37	2	132288272	132288272	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132288272C>T	uc002tta.2	+	3	468	c.416C>T	c.(415-417)TCC>TTC	p.S139F	CCDC74A_uc002ttb.2_Intron	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	139										skin(1)	1						AAGGAGGGCTCCTCACGGACA	0.662													21	92					0	0	1	0	0
CCDC74A	90557	broad.mit.edu	37	2	132290506	132290506	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132290506C>T	uc002tta.2	+	6	998	c.946C>T	c.(946-948)CCC>TCC	p.P316S	CCDC74A_uc002ttb.2_Missense_Mutation_p.P250S	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	316										skin(1)	1						AGCTAGCTTTCCCAGGTGAGT	0.647													26	65					0	0	1	0	0
NCRNA00164	554226	broad.mit.edu	37	2	132912248	132912248	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:132912248C>T	uc002tti.3	-	4		c.848G>A			NCRNA00164_uc002ttj.3_RNA	NR_027019				Homo sapiens non-protein coding RNA 164, mRNA (cDNA clone IMAGE:5169389), with apparent retained intron.												0						TTAAACTTATCAACTGCATTT	0.308													3	17					0	0	1	0	0
GPR39	2863	broad.mit.edu	37	2	133175158	133175158	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133175158G>A	uc002ttl.2	+	1	1012	c.543G>A	c.(541-543)GTG>GTA	p.V181V		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	181	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						ACCCCCTGGTGAACGTGCCCA	0.617													19	62					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133489348	133489348	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133489348C>T	uc002ttp.2	-	17	5779	c.5405G>A	c.(5404-5406)AGG>AAG	p.R1802K	NCKAP5_uc002ttq.2_Missense_Mutation_p.R483K	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1802							protein binding				0						CTGAAGAGGCCTCATCCCTCT	0.517													26	50					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540263	133540263	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133540263G>A	uc002ttp.2	-	14	4495	c.4121C>T	c.(4120-4122)CCA>CTA	p.P1374L	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1374							protein binding				0						CTCAGACTTTGGAGGGATCCT	0.617													24	50					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540322	133540322	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133540322G>A	uc002ttp.2	-	14	4436	c.4062C>T	c.(4060-4062)AGC>AGT	p.S1354S	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1354							protein binding				0						AGCTGCCTGAGCTCCCCAGGG	0.617													14	31					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540419	133540419	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133540419G>A	uc002ttp.2	-	14	4339	c.3965C>T	c.(3964-3966)TCT>TTT	p.S1322F	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1322							protein binding				0						CTTGTTGGGAGAGCTTTCCGT	0.612													6	46					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540465	133540465	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133540465C>T	uc002ttp.2	-	14	4293	c.3919G>A	c.(3919-3921)GAG>AAG	p.E1307K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1307							protein binding				0						TTGCCTCTCTCGGCGGTATTG	0.567													26	63					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541680	133541680	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133541680C>T	uc002ttp.2	-	14	3078	c.2704G>A	c.(2704-2706)GAG>AAG	p.E902K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	902							protein binding				0						TCACTAGACTCAATGGCAGGC	0.647													18	55					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541971	133541971	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133541971G>A	uc002ttp.2	-	14	2787	c.2413C>T	c.(2413-2415)CCC>TCC	p.P805S	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	805							protein binding				0						TTGCCCCTGGGAGGTATTTTT	0.463													21	282					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542206	133542206	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133542206T>A	uc002ttp.2	-	14	2552	c.2178A>T	c.(2176-2178)GCA>GCT	p.A726A	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	726							protein binding				0						TATAGTCTCTTGCAGCAGCTC	0.408													7	89					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542542	133542542	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133542542C>T	uc002ttp.2	-	14	2216	c.1842G>A	c.(1840-1842)GTG>GTA	p.V614V	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	614							protein binding				0						CCAGGTTCTCCACGGACTTAT	0.483													19	44					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133543015	133543015	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133543015G>A	uc002ttp.2	-	14	1743	c.1369C>T	c.(1369-1371)CTG>TTG	p.L457L	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	457							protein binding				0						GGGCTCCCCAGGTCAGCTGTT	0.473													13	45					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133543152	133543152	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:133543152C>T	uc002ttp.2	-	14	1606	c.1232G>A	c.(1231-1233)CGA>CAA	p.R411Q	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	411							protein binding				0						TAACACTTTTCGCTTCTGTAG	0.413													27	55					0	0	1	0	0
TMEM163	81615	broad.mit.edu	37	2	135260556	135260556	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:135260556G>A	uc002ttx.2	-	5	537	c.471C>T	c.(469-471)ATC>ATT	p.I157I	TMEM163_uc002tty.2_Intron	NM_030923	NP_112185	Q8TC26	TM163_HUMAN	transmembrane protein 163	157	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(221;0.154)		TCACCCCCAAGATGACACAGG	0.443													12	18					0	0	1	0	0
ACMSD	130013	broad.mit.edu	37	2	135625210	135625210	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:135625210G>A	uc002ttz.2	+	6	615	c.548G>A	c.(547-549)CGA>CAA	p.R183Q	ACMSD_uc002tua.2_Missense_Mutation_p.R125Q|uc010zbe.1_RNA	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	183					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		ATGGATGGACGAATGGCCAAA	0.498													54	94					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135744367	135744367	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:135744367G>A	uc002tue.1	-	7	2106	c.2075C>T	c.(2074-2076)CCA>CTA	p.P692L	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.P579L|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.P420L|YSK4_uc002tui.3_Missense_Mutation_p.P709L	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	692							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TCTGCCTGATGGAGCCGAACA	0.418													81	173					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135745671	135745671	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:135745671C>A	uc002tue.1	-	7	802	c.771G>T	c.(769-771)GAG>GAT	p.E257D	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.E144D|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_5'UTR|YSK4_uc002tui.3_Missense_Mutation_p.E274D	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	257							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		ATGGGCTGAGCTCATCAGATT	0.453													37	90					4.92203e-23	4.94986e-23	1	1	0
YSK4	80122	broad.mit.edu	37	2	135757541	135757541	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:135757541G>A	uc002tue.1	-	4	311	c.280C>T	c.(280-282)CAA>TAA	p.Q94*	YSK4_uc010fne.1_Nonsense_Mutation_p.Q66*|YSK4_uc002tuf.1_Nonsense_Mutation_p.Q94*|YSK4_uc010fnc.1_Nonsense_Mutation_p.Q94*|YSK4_uc010fnd.1_Intron|YSK4_uc010zbg.1_Nonsense_Mutation_p.Q94*|YSK4_uc002tui.3_Nonsense_Mutation_p.Q111*	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	94							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CTCATTTCTTGGGGAGGACTG	0.363													9	104					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135779312	135779312	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:135779312G>A	uc002tue.1	-	2	142	c.111C>T	c.(109-111)ATC>ATT	p.I37I	YSK4_uc010fne.1_Silent_p.I9I|YSK4_uc002tuf.1_Silent_p.I37I|YSK4_uc010fnc.1_Silent_p.I37I|YSK4_uc010fnd.1_Silent_p.I37I|YSK4_uc010zbg.1_Silent_p.I37I|YSK4_uc002tui.3_Silent_p.I54I	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	37							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TTTGCAAGATGATGTTTTGAT	0.373													18	35					0	0	1	0	0
ZRANB3	84083	broad.mit.edu	37	2	136111119	136111119	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136111119G>A	uc002tum.2	-	4	377	c.260C>T	c.(259-261)CCT>CTT	p.P87L	ZRANB3_uc002tuk.2_5'UTR|ZRANB3_uc002tul.2_Missense_Mutation_p.P87L|ZRANB3_uc002tun.1_Missense_Mutation_p.P27L	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	87	Helicase ATP-binding.					intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		CAGAGACGAAGGGACCACTAT	0.358													17	36					0	0	1	0	0
R3HDM1	23518	broad.mit.edu	37	2	136481641	136481641	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136481641C>T	uc002tuo.2	+	26	3449	c.3079C>T	c.(3079-3081)CGT>TGT	p.R1027C	R3HDM1_uc010fni.2_Missense_Mutation_p.R1026C|R3HDM1_uc002tup.2_Missense_Mutation_p.R972C|R3HDM1_uc010zbh.1_Missense_Mutation_p.R775C	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	1027							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		CCAACCACGTCGTCACCCCCT	0.557													32	85					0	0	1	0	0
UBXN4	23190	broad.mit.edu	37	2	136537829	136537829	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136537829C>T	uc002tur.2	+	12	1573	c.1262C>T	c.(1261-1263)CCA>CTA	p.P421L	UBXN4_uc002tus.2_Missense_Mutation_p.P187L|UBXN4_uc002tut.2_Missense_Mutation_p.P57L	NM_014607	NP_055422	Q92575	UBXN4_HUMAN	UBX domain containing 2	421					response to unfolded protein	endoplasmic reticulum membrane|nuclear envelope	protein binding	p.P421S(1)		skin(2)	2						GTGCTTTATCCATTCCTTGCC	0.438													45	121					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136561642	136561642	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136561642C>T	uc002tuu.1	-	11	4532	c.4521G>A	c.(4519-4521)GAG>GAA	p.E1507E		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1507	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGGTCTCATTCTCCCAGCCTC	0.517													25	72					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136562339	136562339	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136562339G>A	uc002tuu.1	-	10	4473	c.4462C>T	c.(4462-4464)CAG>TAG	p.Q1488*		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1488	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CACCATACCTGGGGCTGGATG	0.547													15	33					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136562369	136562369	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136562369C>T	uc002tuu.1	-	10	4443	c.4432G>A	c.(4432-4434)GAT>AAT	p.D1478N		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1478	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGCAGTGTATCGATGAGCCTC	0.587													13	34					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136562429	136562429	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136562429G>A	uc002tuu.1	-	10	4383	c.4372C>T	c.(4372-4374)CCT>TCT	p.P1458S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1458	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GTTCCATCAGGGAGGATGCGA	0.562													20	37					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136564711	136564711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136564711G>A	uc002tuu.1	-	9	4171	c.4160C>T	c.(4159-4161)TCT>TTT	p.S1387F		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1387	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity	p.S1387F(1)		ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		ATATGCAGCAGAAGCTGCACT	0.373													16	81					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136564845	136564845	+	Silent	SNP	C	T	T	rs150640616		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136564845C>T	uc002tuu.1	-	9	4037	c.4026G>A	c.(4024-4026)ACG>ACA	p.T1342T		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1342	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAGGCCTGTTCGTGTTGTTGA	0.522													47	79					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136566094	136566094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136566094C>T	uc002tuu.1	-	8	3834	c.3823G>A	c.(3823-3825)GGA>AGA	p.G1275R		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1275	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGCCCCACTCCGTTTTCGGTG	0.502													75	169					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136566468	136566468	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136566468G>A	uc002tuu.1	-	8	3460	c.3449C>T	c.(3448-3450)TCC>TTC	p.S1150F		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1150	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CCAGCCCAGGGAGAACTGCAG	0.562													39	60					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136566685	136566685	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136566685C>T	uc002tuu.1	-	8	3243	c.3232G>A	c.(3232-3234)GAA>AAA	p.E1078K		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1078	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GGGGGAAATTCCCCTGAGCCA	0.507													16	28					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136570068	136570068	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136570068G>A	uc002tuu.1	-	7	2177	c.2166C>T	c.(2164-2166)TCC>TCT	p.S722S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	722	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAATCCAAGAGGATGAGGTCT	0.522													36	70					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136575102	136575102	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136575102C>T	uc002tuu.1	-	6	1527	c.1516G>A	c.(1516-1518)GAT>AAT	p.D506N		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	506	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CCACCATGATCCTGCAGGGCC	0.587													23	44					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136575346	136575346	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136575346C>T	uc002tuu.1	-	6	1283	c.1272G>A	c.(1270-1272)GCG>GCA	p.A424A		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	424	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CCTCCAGCGTCGCTTGGCCCT	0.632													30	93					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136575371	136575371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136575371G>A	uc002tuu.1	-	6	1258	c.1247C>T	c.(1246-1248)CCC>CTC	p.P416L		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	416	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GGTGTTCAGGGGCCTGCGTGG	0.652													46	85					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136575497	136575497	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136575497C>T	uc002tuu.1	-	6	1132	c.1121G>A	c.(1120-1122)AGG>AAG	p.R374K		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	374	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAAGGCATCCCTTTCCGCCCT	0.602													47	135					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136575565	136575565	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136575565C>T	uc002tuu.1	-	6	1064	c.1053G>A	c.(1051-1053)ACG>ACA	p.T351T		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	351	Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAGAGGAGTCCGTGGTCTCGT	0.542													30	77					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136587237	136587237	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136587237C>T	uc002tuu.1	-	3	741	c.730G>A	c.(730-732)GAT>AAT	p.D244N		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	244	Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAGAGGAAATCGACCGTGTCC	0.408													33	78					0	0	1	0	0
MCM6	4175	broad.mit.edu	37	2	136610419	136610419	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136610419G>A	uc002tuw.2	-	12	1769	c.1693C>T	c.(1693-1695)CGT>TGT	p.R565C		NM_005915	NP_005906	Q14566	MCM6_HUMAN	minichromosome maintenance complex component 6	565					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|identical protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.166)	Atorvastatin(DB01076)	GAATAGACACGATCAATTGAT	0.368													23	51					0	0	1	0	0
MCM6	4175	broad.mit.edu	37	2	136620245	136620245	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136620245G>A	uc002tuw.2	-	8	1228	c.1152C>T	c.(1150-1152)ACC>ACT	p.T384T		NM_005915	NP_005906	Q14566	MCM6_HUMAN	minichromosome maintenance complex component 6	384	MCM.			PKTTGEGTSLR -> SKDNRRRDLSS (in Ref. 2; AAC50766).	cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|identical protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.166)	Atorvastatin(DB01076)	CTCGAAGAGAGGTCCCTTCTC	0.453													52	116					0	0	1	0	0
CXCR4	7852	broad.mit.edu	37	2	136872763	136872763	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:136872763G>A	uc002tuz.2	-	2	830	c.735C>T	c.(733-735)ATC>ATT	p.I245I	CXCR4_uc002tuy.2_Silent_p.I249I|CXCR4_uc010fnk.2_Silent_p.I230I	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	245	Helical; Name=6.				activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	AGAAAGCCAGGATGAGGATGA	0.502													19	111					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137852557	137852557	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:137852557G>A	uc002tva.1	+	3	972	c.972G>A	c.(970-972)GGG>GGA	p.G324G	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Silent_p.G214G	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GCCGTTCAGGGAGTCTCTTGC	0.537													30	64					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137928403	137928403	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:137928403C>T	uc002tva.1	+	6	1525	c.1525C>T	c.(1525-1527)CCA>TCA	p.P509S	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.P399S	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TTGTGAGGATCCAATGTGCTA	0.512													18	48					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137928454	137928454	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:137928454G>A	uc002tva.1	+	6	1576	c.1576G>A	c.(1576-1578)GGA>AGA	p.G526R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.G416R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCCTGATCATGGAAAATGTGG	0.522													13	31					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138000129	138000129	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:138000129G>A	uc002tva.1	+	9	2160	c.2160G>A	c.(2158-2160)AGG>AGA	p.R720R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.R610R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTGCCCAAGGATGTGCCAAG	0.478													21	42					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138163315	138163315	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:138163315C>T	uc002tva.1	+	12	2540	c.2540C>T	c.(2539-2541)TCC>TTC	p.S847F	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.S737F	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ACTGCTTGGTCCAAGTTTACG	0.502													8	22					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138169253	138169253	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:138169253G>A	uc002tva.1	+	13	2677	c.2677G>A	c.(2677-2679)GAT>AAT	p.D893N	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.D783N	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ATGTCCTTGTGATGAATTTAT	0.453													48	87					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138208520	138208520	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:138208520T>C	uc002tva.1	+	14	2972	c.2972T>C	c.(2971-2973)ATT>ACT	p.I991T	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GGAGTGAGAATTCGATCCAAA	0.403													8	16					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138378212	138378212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:138378212C>T	uc002tva.1	+	19	3628	c.3628C>T	c.(3628-3630)CCC>TCC	p.P1210S	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AATGAGCATTCCCTGCTTGGT	0.468													70	135					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138400170	138400170	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:138400170G>A	uc002tva.1	+	20	3825	c.3825G>A	c.(3823-3825)TGG>TGA	p.W1275*	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GCTACAGCTGGGTCCTTGGCA	0.488													33	76					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138414689	138414689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:138414689G>A	uc002tva.1	+	23	4247	c.4247G>A	c.(4246-4248)CGA>CAA	p.R1416Q	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AATAACGAACGAACTGTATGG	0.413													16	48					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	139045817	139045817	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:139045817C>T	uc010zbk.1	-	1	624	c.481G>A	c.(481-483)GAA>AAA	p.E161K						SubName: Full=cDNA, FLJ79100, highly similar to 14-3-3 protein epsilon (14-3-3E);																		TTAAGAATTTCGTAGTAGAAT	0.423													44	81					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	139046187	139046187	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:139046187G>A	uc010zbk.1	-	1	254	c.111C>T	c.(109-111)TCC>TCT	p.S37S						SubName: Full=cDNA, FLJ79100, highly similar to 14-3-3 protein epsilon (14-3-3E);																		TTATTCTCCAGGAGGTTCTTC	0.418													37	90					0	0	1	0	0
SPOPL	339745	broad.mit.edu	37	2	139326544	139326544	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:139326544C>T	uc002tvh.2	+	11	1473	c.1073C>T	c.(1072-1074)TCC>TTC	p.S358F		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	358						nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		GGGTGGAAGTCCATGATTCAG	0.408													102	267					0	0	1	0	0
NXPH2	11249	broad.mit.edu	37	2	139428696	139428696	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:139428696C>T	uc002tvi.2	-	2	591	c.591G>A	c.(589-591)GCG>GCA	p.A197A		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	197	V (Cys-rich).				neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		CGGTCTTTTTCGCCCGATCTG	0.488													13	25					0	0	1	0	0
NXPH2	11249	broad.mit.edu	37	2	139429023	139429023	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:139429023C>T	uc002tvi.2	-	2	264	c.264G>A	c.(262-264)ACG>ACA	p.T88T		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	88	II.				neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		CCTGAATCTCCGTGATGTTGG	0.483													76	41					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	140990817	140990817	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:140990817C>T	uc002tvj.1	-	91	14710	c.13738G>A	c.(13738-13740)GAT>AAT	p.D4580N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4580	Cytoplasmic (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTCCTTTCATCAACACTTCCT	0.318										TSP Lung(27;0.18)			15	55					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	140990874	140990874	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:140990874C>T	uc002tvj.1	-	91	14653	c.13681G>A	c.(13681-13683)GTA>ATA	p.V4561I		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4561	Endocytosis signal (Potential).|Cytoplasmic (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTGCATATACCGGATTGGAG	0.323										TSP Lung(27;0.18)			18	45					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141079606	141079606	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141079606G>A	uc002tvj.1	-	82	13538	c.12566C>T	c.(12565-12567)CCT>CTT	p.P4189L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4189	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGCCCCAGAAGGATTTAGCAA	0.373										TSP Lung(27;0.18)			15	60					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141081603	141081603	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141081603C>T	uc002tvj.1	-	81	13345	c.12373G>A	c.(12373-12375)GAA>AAA	p.E4125K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4125	Extracellular (Potential).|LDL-receptor class B 36.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATATAATCTTCAAAGATATCG	0.289										TSP Lung(27;0.18)			38	111					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141093193	141093193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141093193G>A	uc002tvj.1	-	78	13079	c.12107C>T	c.(12106-12108)CCT>CTT	p.P4036L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4036	Extracellular (Potential).|LDL-receptor class B 34.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCCTCTTTTAGGATTTACTGC	0.378										TSP Lung(27;0.18)			36	94					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141108493	141108493	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141108493C>T	uc002tvj.1	-	77	12737	c.11765G>A	c.(11764-11766)AGA>AAA	p.R3922K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3922	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCCTGTTATTCTTGAATTATG	0.343										TSP Lung(27;0.18)			15	146					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141116507	141116507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141116507G>A	uc002tvj.1	-	73	12112	c.11140C>T	c.(11140-11142)CTT>TTT	p.L3714F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3714	Extracellular (Potential).|LDL-receptor class A 31.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GATGGACAAAGAAATTTGACT	0.368										TSP Lung(27;0.18)			35	84					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141128297	141128297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141128297C>T	uc002tvj.1	-	71	11962	c.10990G>A	c.(10990-10992)GAA>AAA	p.E3664K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3664	Extracellular (Potential).|LDL-receptor class A 29.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAGTTCTCTTCATCACTGCCA	0.393										TSP Lung(27;0.18)			111	229					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141135801	141135801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141135801G>A	uc002tvj.1	-	68	11558	c.10586C>T	c.(10585-10587)TCT>TTT	p.S3529F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3529	Extracellular (Potential).|LDL-receptor class A 26.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAACCTTGAAGAAACACAGTC	0.408										TSP Lung(27;0.18)			17	40					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141215150	141215150	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141215150C>T	uc002tvj.1	-	61	10668	c.9696G>A	c.(9694-9696)GGG>GGA	p.G3232G		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3232	Extracellular (Potential).|LDL-receptor class B 32.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACTTGGTTTTCCCATCAGTCC	0.428										TSP Lung(27;0.18)			57	144					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141243024	141243024	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141243024C>T	uc002tvj.1	-	59	10285	c.9313G>A	c.(9313-9315)GAC>AAC	p.D3105N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3105	Extracellular (Potential).|LDL-receptor class B 29.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTTCTGTGTCAGACCAATAG	0.393										TSP Lung(27;0.18)			29	56					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141260537	141260537	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141260537C>T	uc002tvj.1	-	54	9629	c.8657G>A	c.(8656-8658)AGT>AAT	p.S2886N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2886	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGTACCTGCACTTTTACACTT	0.368										TSP Lung(27;0.18)			19	80					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141359167	141359167	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141359167C>T	uc002tvj.1	-	42	7813	c.6841G>A	c.(6841-6843)GAT>AAT	p.D2281N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2281	Extracellular (Potential).|LDL-receptor class B 24.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TACAGTGTATCCCAGGCTCTG	0.453										TSP Lung(27;0.18)			11	32					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141457966	141457967	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141457966_141457967GA>AT	uc002tvj.1	-	41	7623_7624	c.6651_6652TC>AT	c.(6649-6654)AATCCA>AAATCA	p.2217_2218NP>KS		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2217_2218	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAATAACGTGGATTCTCATATG	0.337										TSP Lung(27;0.18)			19	132					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141459834	141459834	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141459834G>A	uc002tvj.1	-	39	7150	c.6178C>T	c.(6178-6180)CGC>TGC	p.R2060C		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2060	Extracellular (Potential).|LDL-receptor class B 22.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTGTCTGTGCGAGCATCACAC	0.373										TSP Lung(27;0.18)			13	166					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141473643	141473643	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141473643G>A	uc002tvj.1	-	37	6894	c.5922C>T	c.(5920-5922)TTC>TTT	p.F1974F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1974	Extracellular (Potential).|LDL-receptor class B 20.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAATTAAGTTGAAACCATGAT	0.333										TSP Lung(27;0.18)			36	116					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141526869	141526869	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141526869C>T	uc002tvj.1	-	35	6643	c.5671G>A	c.(5671-5673)GGA>AGA	p.G1891R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1891	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGAGGTATTCCCCTGATTCCT	0.408										TSP Lung(27;0.18)			16	84					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141597566	141597566	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141597566G>A	uc002tvj.1	-	31	6175	c.5203C>T	c.(5203-5205)CCA>TCA	p.P1735S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1735	Extracellular (Potential).|LDL-receptor class B 16.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTACCAACTGGCTCCTTCTGA	0.328										TSP Lung(27;0.18)			6	28					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141607771	141607771	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141607771G>A	uc002tvj.1	-	29	5811	c.4839C>T	c.(4837-4839)TTC>TTT	p.F1613F	LRP1B_uc010fnl.1_Silent_p.F795F	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1613	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAGATGCATCGAAGTCTATCA	0.373										TSP Lung(27;0.18)			31	79					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141609344	141609344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141609344G>A	uc002tvj.1	-	28	5560	c.4588C>T	c.(4588-4590)CCT>TCT	p.P1530S	LRP1B_uc010fnl.1_Missense_Mutation_p.P712S	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1530	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCTGCACAAGGATTGGGAGCT	0.453										TSP Lung(27;0.18)			35	100					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141625347	141625347	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141625347C>T	uc002tvj.1	-	27	5363	c.4391G>A	c.(4390-4392)CGA>CAA	p.R1464Q	LRP1B_uc010fnl.1_Missense_Mutation_p.R646Q	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1464	Extracellular (Potential).|LDL-receptor class B 12.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTCATGACCTCGGATGATTTC	0.403										TSP Lung(27;0.18)			30	96					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141660725	141660725	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141660725G>A	uc002tvj.1	-	23	4502	c.3530C>T	c.(3529-3531)TCG>TTG	p.S1177L	LRP1B_uc010fnl.1_Missense_Mutation_p.S359L	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1177	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATTGTTCAGCGAACACTCATC	0.393										TSP Lung(27;0.18)			28	51					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141709478	141709478	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:141709478G>A	uc002tvj.1	-	19	3891	c.2919C>T	c.(2917-2919)TTC>TTT	p.F973F	LRP1B_uc010fnl.1_Silent_p.F155F	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	973	Extracellular (Potential).|LDL-receptor class A 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTTGCATACGAATTGGGTTA	0.418										TSP Lung(27;0.18)			19	52					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	142237983	142237983	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:142237983C>T	uc002tvj.1	-	3	1297	c.325G>A	c.(325-327)GAA>AAA	p.E109K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	109	Extracellular (Potential).|LDL-receptor class A 2.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGTACTCCTTCGTCATACCCA	0.413										TSP Lung(27;0.18)			12	54					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	142238075	142238075	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:142238075G>A	uc002tvj.1	-	3	1205	c.233C>T	c.(232-234)CCC>CTC	p.P78L	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	78	Extracellular (Potential).|LDL-receptor class A 2.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTGATTCAAGGGGCACTTGAT	0.408										TSP Lung(27;0.18)			14	107					0	0	1	0	0
KYNU	8942	broad.mit.edu	37	2	143712381	143712381	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:143712381G>A	uc002tvl.2	+	5	506	c.376G>A	c.(376-378)GCC>ACC	p.A126T	KYNU_uc002tvk.2_Missense_Mutation_p.A126T|KYNU_uc010fnm.2_Missense_Mutation_p.A126T	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	126					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	TTTTACAGGAGCCAATGAGAA	0.299													27	68					0	0	1	0	0
ARHGAP15	55843	broad.mit.edu	37	2	143986231	143986231	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:143986231C>T	uc002tvm.3	+	5	529	c.378C>T	c.(376-378)TCC>TCT	p.S126S	ARHGAP15_uc010zbl.1_Silent_p.S126S	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	126	PH.				regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		AGGCTCTGTCCAATATGGTAA	0.303													34	58					0	0	1	0	0
ARHGAP15	55843	broad.mit.edu	37	2	144276933	144276933	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:144276933G>A	uc002tvm.3	+	10	1076	c.925G>A	c.(925-927)GGT>AGT	p.G309S	ARHGAP15_uc002tvn.2_Missense_Mutation_p.G75S	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	309	Rho-GAP.				regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		TGAGAAAAGAGGTGGGTGACT	0.453													29	78					0	0	1	0	0
PABPC1P2	728773	broad.mit.edu	37	2	147345549	147345549	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:147345549G>A	uc002twf.3	+	1	925	c.9G>A	c.(7-9)GGG>GGA	p.G3G		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						AAATGGATGGGATGCTCCTGA	0.438													7	10					0	0	1	0	0
PABPC1P2	728773	broad.mit.edu	37	2	147346169	147346169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:147346169G>A	uc002twf.3	+	1	1545	c.629G>A	c.(628-630)CGA>CAA	p.R210Q		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						GCAAGTGTACGAGCTGTGCCC	0.507													13	41					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149227596	149227596	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:149227596C>T	uc002twm.3	+	9	3072	c.2084C>T	c.(2083-2085)TCA>TTA	p.S695L	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.S695L|MBD5_uc002twn.1_Missense_Mutation_p.S136L	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	695						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GGTCAGGGTTCATTTCCCATC	0.468													24	64					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149227972	149227972	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:149227972C>T	uc002twm.3	+	9	3448	c.2460C>T	c.(2458-2460)TCC>TCT	p.S820S	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Silent_p.S820S|MBD5_uc002twn.1_Silent_p.S261S	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	820						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CAACGTCCTCCACTCCAGTGA	0.428													27	90					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149260061	149260061	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:149260061C>T	uc002twm.3	+	13	5308	c.4320C>T	c.(4318-4320)GTC>GTT	p.V1440V	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Silent_p.V1440V|MBD5_uc002two.2_Silent_p.V698V|MBD5_uc002twp.2_Silent_p.V490V	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1440	PWWP.					chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		ACAGCCGTGTCCGGAAAAGGA	0.408													9	41					0	0	1	0	0
KIF5C	3800	broad.mit.edu	37	2	149840229	149840229	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:149840229G>A	uc010zbu.1	+	15	2033	c.1665G>A	c.(1663-1665)TTG>TTA	p.L555L	KIF5C_uc002tws.1_RNA|KIF5C_uc002twt.2_Silent_p.L107L	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	555					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		ATTTGCTGTTGAAAGATCTGG	0.453													15	35					0	0	1	0	0
KIF5C	3800	broad.mit.edu	37	2	149853837	149853837	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:149853837G>A	uc010zbu.1	+	18	2451	c.2083G>A	c.(2083-2085)GAT>AAT	p.D695N	KIF5C_uc002tws.1_RNA|KIF5C_uc002twt.2_Missense_Mutation_p.D247N|KIF5C_uc002twu.1_5'Flank	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	695					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		GCGGTTGCAGGATGCTGAAGA	0.423													10	31					0	0	1	0	0
RND3	390	broad.mit.edu	37	2	151328151	151328151	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:151328151G>A	uc002txe.2	-	4	717	c.473C>T	c.(472-474)TCC>TTC	p.S158F	RND3_uc002txf.2_Missense_Mutation_p.S157F|RND3_uc002txg.2_Missense_Mutation_p.S158F|RND3_uc010zbv.1_Intron|RND3_uc010zbw.1_Missense_Mutation_p.S29F	NM_005168	NP_005159	P61587	RND3_HUMAN	ras homolog gene family, member E precursor	158					actin cytoskeleton organization|cell adhesion|small GTPase mediated signal transduction	Golgi membrane	GTP binding|GTPase activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.106)		CTGGTCATAGGACACTGGCGT	0.408													11	168					0	0	1	0	0
RBM43	375287	broad.mit.edu	37	2	152107524	152107524	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152107524G>A	uc002txh.2	-	4	1118	c.970C>T	c.(970-972)CTG>TTG	p.L324L		NM_198557	NP_940959	Q6ZSC3	RBM43_HUMAN	RNA binding motif protein 43	324							nucleotide binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		AGGTTAATCAGGACTTCAAGG	0.343													32	91					0	0	1	0	0
TNFAIP6	7130	broad.mit.edu	37	2	152235965	152235965	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152235965C>T	uc002txk.2	+	6	828	c.752C>T	c.(751-753)TCC>TTC	p.S251F		NM_007115	NP_009046	P98066	TSG6_HUMAN	tumor necrosis factor, alpha-induced protein 6	251					cell adhesion|cell-cell signaling|inflammatory response|signal transduction		hyaluronic acid binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		GATCCTGTATCCAAATCCAGT	0.353													36	123					0	0	1	0	0
RIF1	55183	broad.mit.edu	37	2	152319619	152319619	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152319619C>T	uc002txm.2	+	30	3715	c.3585C>T	c.(3583-3585)TTC>TTT	p.F1195F	RIF1_uc002txl.2_Silent_p.F1195F|RIF1_uc002txn.2_Silent_p.F1195F|RIF1_uc002txo.2_Silent_p.F1195F|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1195					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AAAATTCTTTCGTTGTCAGCA	0.368													37	75					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152394450	152394450	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152394450C>T	uc010fnx.2	-	112	16126	c.15935G>A	c.(15934-15936)TGG>TAG	p.W5312*	NEB_uc002txr.2_Nonsense_Mutation_p.W1735*	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5312	Nebulin 145.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AATGGACCTCCAGATACCCAA	0.393													12	38					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152402475	152402475	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152402475C>T	uc010fnx.2	-	107	15592	c.15401G>A	c.(15400-15402)CGA>CAA	p.R5134Q	NEB_uc002txr.2_Missense_Mutation_p.R1557Q	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5134					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GTATTTGTCTCGCATCTTCCT	0.343													7	13					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152423746	152423746	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152423746C>T	uc010fnx.2	-	86	13180	c.12989G>A	c.(12988-12990)TGG>TAG	p.W4330*	NEB_uc002txr.2_Nonsense_Mutation_p.W753*	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4330	Nebulin 119.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ATGACACATCCATTGGTGCAA	0.428													36	88					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152468714	152468714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152468714G>A	uc010fnx.2	-	74	11253	c.11062C>T	c.(11062-11064)CTG>TTG	p.L3688L		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3688	Nebulin 101.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTCATTGTCAGGGCATTATTC	0.458													11	53					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152470822	152470822	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152470822G>A	uc010fnx.2	-	73	11031	c.10840C>T	c.(10840-10842)CAG>TAG	p.Q3614*		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3614	Nebulin 99.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTCCGAGCCTGAATGACGTCA	0.428													43	96					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152496920	152496921	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152496920_152496921GG>AA	uc010fnx.2	-	61	8824_8825	c.8633_8634CC>TT	c.(8632-8634)CCC>CTT	p.P2878L	NEB_uc002txu.2_5'Flank	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2878	Nebulin 78.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CGCTCTGGTCGGGCAGGCATGT	0.545													70	220					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152499804	152499804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152499804C>T	uc010fnx.2	-	58	8211	c.8020G>A	c.(8020-8022)GAG>AAG	p.E2674K		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2674	Nebulin 72.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTCTCATCCTCGAGAGAACCA	0.408													24	77					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152507129	152507129	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152507129C>T	uc010fnx.2	-	53	7377	c.7186G>A	c.(7186-7188)GAT>AAT	p.D2396N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2396	Nebulin 64.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGCACAACATCGTTCTGATCA	0.388													67	172					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152515623	152515623	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152515623G>A	uc010fnx.2	-	47	6222	c.6031C>T	c.(6031-6033)CCC>TCC	p.P2011S		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2011	Nebulin 53.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ATAATCTGGGGGATATCAGGC	0.378													73	168					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152518823	152518823	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152518823C>T	uc010fnx.2	-	46	5987	c.5796G>A	c.(5794-5796)ATG>ATA	p.M1932I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1932					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAATGCCCTTCATGAAGTCAG	0.433													16	120					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152520314	152520314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152520314C>T	uc010fnx.2	-	45	5702	c.5511G>A	c.(5509-5511)CTG>CTA	p.L1837L		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1837	Nebulin 48.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGTCATCTTCCAGGCTCCGGA	0.453													22	70					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152521994	152521994	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152521994C>T	uc010fnx.2	-	42	5282	c.5091G>A	c.(5089-5091)GAG>GAA	p.E1697E		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1697	Nebulin 44.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CCTCCAGGGACTCTATGGGCA	0.448													7	14					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152524385	152524385	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152524385C>T	uc010fnx.2	-	40	4843	c.4652G>A	c.(4651-4653)GGC>GAC	p.G1551D		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1551					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAAATCATAGCCCTTGGCAAT	0.333													15	37					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152534253	152534253	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152534253C>T	uc010fnx.2	-	34	3791	c.3600G>A	c.(3598-3600)ATG>ATA	p.M1200I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1200					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAATGCCTTTCATCCAGTTGT	0.463													88	268					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152544005	152544005	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152544005C>T	uc010fnx.2	-	27	2756	c.2565G>A	c.(2563-2565)ATG>ATA	p.M855I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	855					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGGCTCCAATCATTTTCCCTT	0.458													19	173					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152553713	152553713	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152553713C>T	uc010fnx.2	-	16	1610	c.1419G>A	c.(1417-1419)CAG>CAA	p.Q473Q	NEB_uc010fny.1_Silent_p.Q27Q	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	473					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GAGTTATGGTCTGAGGGAAGA	0.383													13	61					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152554067	152554067	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152554067G>A	uc010fnx.2	-	14	1439	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F	NEB_uc010fny.1_5'UTR	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	416	Nebulin 10.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CATCACTACTGAAGTTCTGCA	0.343													9	97					0	0	1	0	0
CACNB4	785	broad.mit.edu	37	2	152695833	152695833	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152695833G>A	uc002tya.2	-	14	1431	c.1363C>T	c.(1363-1365)CTA>TTA	p.L455L	CACNB4_uc002txy.2_Silent_p.L421L|CACNB4_uc002txz.2_Silent_p.L437L|CACNB4_uc010fnz.2_Silent_p.L393L	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	455					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	GAGGTCATTAGACTTCGTCTT	0.418													46	103					0	0	1	0	0
CACNB4	785	broad.mit.edu	37	2	152737379	152737379	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152737379C>T	uc002tya.2	-	4	393	c.325G>A	c.(325-327)GAG>AAG	p.E109K	CACNB4_uc002txy.2_Missense_Mutation_p.E75K|CACNB4_uc002txz.2_Missense_Mutation_p.E91K|CACNB4_uc010fnz.2_Missense_Mutation_p.E109K|CACNB4_uc002tyb.2_Missense_Mutation_p.E75K	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	109					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	GGCACATCCTCGTCCAGGGCG	0.473													13	26					0	0	1	0	0
CACNB4	785	broad.mit.edu	37	2	152737408	152737408	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:152737408G>T	uc002tya.2	-	4	364	c.296C>A	c.(295-297)ACA>AAA	p.T99K	CACNB4_uc002txy.2_Missense_Mutation_p.T65K|CACNB4_uc002txz.2_Missense_Mutation_p.T81K|CACNB4_uc010fnz.2_Missense_Mutation_p.T99K|CACNB4_uc002tyb.2_Missense_Mutation_p.T65K	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	99					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	GCTCACATTTGTCTTCACGGC	0.448													14	31					4.7546e-09	4.76958e-09	1	1	0
FMNL2	114793	broad.mit.edu	37	2	153417432	153417432	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:153417432G>A	uc002tye.2	+	6	846	c.479G>A	c.(478-480)AGC>AAC	p.S160N		NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	160	GBD/FH3.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding	p.S160S(1)		central_nervous_system(2)|ovary(1)	3						ACTGTGGAGAGCTCGGTGGAC	0.473													6	14					0	0	1	0	0
FMNL2	114793	broad.mit.edu	37	2	153476190	153476190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:153476190G>A	uc002tye.2	+	15	2162	c.1795G>A	c.(1795-1797)GGA>AGA	p.G599R	FMNL2_uc010fob.2_Missense_Mutation_p.G48R|FMNL2_uc002tyf.2_Missense_Mutation_p.G48R	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	599	Pro-rich.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						TCCGCTGCCTGGAACATCTTC	0.458													10	22					0	0	1	0	0
FMNL2	114793	broad.mit.edu	37	2	153497395	153497395	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:153497395G>A	uc002tye.2	+	25	3503	c.3136G>A	c.(3136-3138)GGA>AGA	p.G1046R	FMNL2_uc010fob.2_Missense_Mutation_p.G502R|FMNL2_uc002tyf.2_Missense_Mutation_p.G495R	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	1046	DAD.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						TGTATATGAGGGAAAAGATGG	0.413													12	42					0	0	1	0	0
GALNT13	114805	broad.mit.edu	37	2	155098568	155098568	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:155098568G>A	uc002tyr.3	+	5	904	c.337G>A	c.(337-339)GAA>AAA	p.E113K	GALNT13_uc002tyt.3_Missense_Mutation_p.E113K|GALNT13_uc010foc.1_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	113	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CTACCCTGATGAACTTCCAAA	0.333													24	41					0	0	1	0	0
GALNT13	114805	broad.mit.edu	37	2	155295167	155295167	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:155295167C>T	uc002tyr.3	+	12	2026	c.1459C>T	c.(1459-1461)CTC>TTC	p.L487F	GALNT13_uc002tyt.3_Missense_Mutation_p.L487F|GALNT13_uc010fod.2_Missense_Mutation_p.T219I|uc002tyu.1_Intron	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	487	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TGTTTCTAGACTCAATGGACC	0.318													35	90					0	0	1	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555305	155555305	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:155555305G>A	uc002tyv.1	+	1	213	c.18G>A	c.(16-18)AGG>AGA	p.R6R	KCNJ3_uc010zce.1_Silent_p.R6R	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	6	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	CACTCCGAAGGAAATTTGGGG	0.597													11	74					0	0	1	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555713	155555713	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:155555713C>T	uc002tyv.1	+	1	621	c.426C>T	c.(424-426)GCC>GCT	p.A142A	KCNJ3_uc010zce.1_Silent_p.A142A	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	142					synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	AGACGGAGGCCACCATCGGCT	0.572													20	52					0	0	1	0	0
KCNJ3	3760	broad.mit.edu	37	2	155566292	155566292	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:155566292G>A	uc002tyv.1	+	2	1075	c.880G>A	c.(880-882)GAG>AAG	p.E294K	KCNJ3_uc010zce.1_Intron	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	294	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TGAACAGTTCGAGATTGTCGT	0.408													17	67					0	0	1	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711257	155711257	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:155711257G>A	uc002tyv.1	+	3	1133	c.938G>A	c.(937-939)CGA>CAA	p.R313Q	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	313	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TGTCAAGCTCGAACATCATAT	0.358													30	80					0	0	1	0	0
NR4A2	4929	broad.mit.edu	37	2	157186322	157186322	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:157186322G>A	uc002tyz.3	-	3	799	c.377C>T	c.(376-378)TCG>TTG	p.S126L	NR4A2_uc002tyx.3_Missense_Mutation_p.S63L|NR4A2_uc010zcf.1_Missense_Mutation_p.S126L|NR4A2_uc010zcg.1_5'Flank	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	126	Gln-rich.				cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						CGTCGGGGGCGAGGAGGGCTT	0.622													50	85					0	0	1	0	0
GALNT5	11227	broad.mit.edu	37	2	158114750	158114750	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158114750G>A	uc002tzg.2	+	1	411	c.156G>A	c.(154-156)AGG>AGA	p.R52R	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	52	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						TTGTGAGGAGGGAGCGGATAG	0.483													47	147					0	0	1	0	0
GALNT5	11227	broad.mit.edu	37	2	158142628	158142628	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158142628G>A	uc002tzg.2	+	3	1978	c.1723G>A	c.(1723-1725)GGA>AGA	p.G575R	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	575	Catalytic subdomain A.|Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						CAGGCTGGCAGGAGCACAGAA	0.294													20	66					0	0	1	0	0
CYTIP	9595	broad.mit.edu	37	2	158272456	158272456	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158272456C>A	uc002tzj.1	-	8	885	c.813G>T	c.(811-813)AGG>AGT	p.R271S	CYTIP_uc010zcl.1_Missense_Mutation_p.R165S	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	271	Ser-rich.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						TGAAGGCACCCCTGCTGGAGT	0.532													28	57					1.75199e-13	1.75957e-13	1	1	0
CYTIP	9595	broad.mit.edu	37	2	158291210	158291210	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158291210C>T	uc002tzj.1	-	2	296	c.224G>A	c.(223-225)AGA>AAA	p.R75K	CYTIP_uc010zcl.1_5'UTR	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	75					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						ATCTCTTTACCTTTGAGACCA	0.303													8	28					0	0	1	0	0
ACVR1C	130399	broad.mit.edu	37	2	158395161	158395161	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158395161G>A	uc002tzk.3	-	8	1523	c.1280C>T	c.(1279-1281)TCG>TTG	p.S427L	ACVR1C_uc002tzl.3_Missense_Mutation_p.S347L|ACVR1C_uc010fof.2_Missense_Mutation_p.S270L|ACVR1C_uc010foe.2_Missense_Mutation_p.S377L	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	427	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						TTCCTCTATCGAGGGATCTGA	0.363													23	99					0	0	1	0	0
ACVR1C	130399	broad.mit.edu	37	2	158443811	158443811	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158443811G>A	uc002tzk.3	-	2	435	c.192C>T	c.(190-192)GTC>GTT	p.V64V	ACVR1C_uc002tzl.3_Silent_p.V64V|ACVR1C_uc010fof.2_Silent_p.V64V|ACVR1C_uc010foe.2_Silent_p.V14V	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	64	Extracellular (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						CTGGAAGGGAGACACAGGATT	0.423													98	264					0	0	1	0	0
ACVR1	90	broad.mit.edu	37	2	158617438	158617438	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158617438G>T	uc002tzm.3	-	10	1557	c.1218C>A	c.(1216-1218)GCC>GCA	p.A406A	ACVR1_uc002tzn.3_Silent_p.A406A|ACVR1_uc010fog.2_Silent_p.A406A	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	406	Cytoplasmic (Potential).|Protein kinase.				BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	CAAGTCCAAAGGCCCAAATAT	0.458													5	75					1.024e-07	1.02659e-07	1	1	0
ACVR1	90	broad.mit.edu	37	2	158634709	158634709	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158634709G>A	uc002tzm.3	-	6	816	c.477C>T	c.(475-477)CCC>CCT	p.P159P	ACVR1_uc002tzn.3_Silent_p.P159P|ACVR1_uc010fog.2_Silent_p.P159P	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	159	Cytoplasmic (Potential).				BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	CCACGTCTCGGGGATTGAGGC	0.483													16	40					0	0	1	0	0
UPP2	151531	broad.mit.edu	37	2	158974352	158974353	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158974352_158974353CC>TT	uc002tzp.2	+	4	550_551	c.356_357CC>TT	c.(355-357)CCC>CTT	p.P119L	UPP2_uc002tzo.2_Missense_Mutation_p.P176L	NM_173355	NP_775491	O95045	UPP2_HUMAN	uridine phosphorylase 2 isoform a	119					nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|uridine metabolic process	cytosol|type III intermediate filament	uridine phosphorylase activity				0						ATGGGCATCCCCTCCATTTCTA	0.411													12	102					0	0	1	0	0
UPP2	151531	broad.mit.edu	37	2	158974450	158974450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:158974450G>A	uc002tzp.2	+	4	648	c.454G>A	c.(454-456)GGG>AGG	p.G152R	UPP2_uc002tzo.2_Missense_Mutation_p.G209R	NM_173355	NP_775491	O95045	UPP2_HUMAN	uridine phosphorylase 2 isoform a	152					nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|uridine metabolic process	cytosol|type III intermediate filament	uridine phosphorylase activity				0						AGGGGGAATAGGTGAGACGGA	0.433													29	95					0	0	1	0	0
CCDC148	130940	broad.mit.edu	37	2	159028717	159028717	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:159028717G>A	uc002tzq.2	-	14	1947	c.1684C>T	c.(1684-1686)CAT>TAT	p.H562Y	CCDC148_uc002tzr.2_Missense_Mutation_p.H410Y|CCDC148_uc010foh.2_Missense_Mutation_p.H275Y	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	562										ovary(2)	2						AGTGTTCTATGAAGTCCAGCT	0.323													8	88					0	0	1	0	0
CCDC148	130940	broad.mit.edu	37	2	159165961	159165961	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:159165961G>A	uc002tzq.2	-	9	1357	c.1094C>T	c.(1093-1095)GCT>GTT	p.A365V	CCDC148_uc002tzr.2_Missense_Mutation_p.A213V|CCDC148_uc010foh.2_Missense_Mutation_p.A78V|CCDC148_uc010foi.1_Missense_Mutation_p.A312V|CCDC148_uc010foj.1_Missense_Mutation_p.A213V|CCDC148_uc010fok.1_Missense_Mutation_p.A279V	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	365	Potential.									ovary(2)	2						TTTCAGATCAGCACACAATTC	0.403													25	60					0	0	1	0	0
CCDC148	130940	broad.mit.edu	37	2	159166008	159166008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:159166008C>T	uc002tzq.2	-	9	1310	c.1047G>A	c.(1045-1047)ATG>ATA	p.M349I	CCDC148_uc002tzr.2_Missense_Mutation_p.M197I|CCDC148_uc010foh.2_Missense_Mutation_p.M62I|CCDC148_uc010foi.1_Missense_Mutation_p.M296I|CCDC148_uc010foj.1_Missense_Mutation_p.M197I|CCDC148_uc010fok.1_Missense_Mutation_p.M263I	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	349										ovary(2)	2						ACATGCTCTCCATTTCATGTG	0.403													9	77					0	0	1	0	0
PKP4	8502	broad.mit.edu	37	2	159499093	159499093	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:159499093C>T	uc002tzv.2	+	11	2051	c.1791C>T	c.(1789-1791)CTC>CTT	p.L597L	PKP4_uc002tzt.1_Silent_p.L449L|PKP4_uc002tzu.2_Silent_p.L597L|PKP4_uc002tzw.2_Silent_p.L597L|PKP4_uc002tzx.2_Silent_p.L254L|PKP4_uc002tzy.1_Silent_p.L255L|PKP4_uc002tzz.1_Silent_p.L595L|PKP4_uc002uaa.2_Silent_p.L449L	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	597	ARM 3.				cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						TTCGAAACCTCGTTTTTGGCA	0.433										HNSCC(62;0.18)			25	106					0	0	1	0	0
TANC1	85461	broad.mit.edu	37	2	160035504	160035504	+	Silent	SNP	C	T	T	rs148016866	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160035504C>T	uc002uag.2	+	14	2614	c.2340C>T	c.(2338-2340)GGC>GGT	p.G780G	TANC1_uc010fol.1_Silent_p.G674G|TANC1_uc010zcm.1_Silent_p.G772G|TANC1_uc010fom.1_Silent_p.G586G|TANC1_uc002uai.1_RNA	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	780						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						TTAATGCTGGCCACATCCAGG	0.572													46	205					0	0	1	0	0
TANC1	85461	broad.mit.edu	37	2	160050863	160050863	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160050863C>T	uc002uag.2	+	17	3112	c.2838C>T	c.(2836-2838)GGC>GGT	p.G946G	TANC1_uc010zcm.1_Silent_p.G938G|TANC1_uc010fom.1_Silent_p.G752G	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	946	ANK 2.					cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						CTCACCTTGGCCACGAGGAAG	0.557													27	65					0	0	1	0	0
MARCH7	64844	broad.mit.edu	37	2	160604751	160604751	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160604751C>T	uc002uax.2	+	5	1072	c.950C>T	c.(949-951)TCT>TTT	p.S317F	MARCH7_uc010foq.2_Missense_Mutation_p.S317F|MARCH7_uc010zcn.1_Missense_Mutation_p.S261F|MARCH7_uc010for.2_Missense_Mutation_p.S279F|MARCH7_uc002uay.2_RNA	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	317	Ser-rich.						ligase activity|zinc ion binding				0						TCTTACGTTTCTCCAAGAATC	0.393													29	45					0	0	1	0	0
LY75	4065	broad.mit.edu	37	2	160708785	160708785	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160708785G>A	uc002ubc.3	-	21	2879	c.2810C>T	c.(2809-2811)TCG>TTG	p.S937L	LY75_uc002ubb.3_Missense_Mutation_p.S937L|LY75_uc010fos.2_Missense_Mutation_p.S937L	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	937	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTTCTCTAACGAAGAAACATT	0.373													23	84					0	0	1	0	0
LY75	4065	broad.mit.edu	37	2	160710199	160710199	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160710199C>T	uc002ubc.3	-	19	2674	c.2605G>A	c.(2605-2607)GAT>AAT	p.D869N	LY75_uc002ubb.3_Missense_Mutation_p.D869N|LY75_uc010fos.2_Missense_Mutation_p.D869N	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	869	Extracellular (Potential).|C-type lectin 5.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTCTGTCCATCACCAGATATC	0.363													48	118					0	0	1	0	0
LY75	4065	broad.mit.edu	37	2	160732029	160732029	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160732029C>T	uc002ubc.3	-	12	1969	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	LY75_uc002ubb.3_Missense_Mutation_p.E634K|LY75_uc010fos.2_Missense_Mutation_p.E634K|LY75_uc010fot.1_Missense_Mutation_p.E634K	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	634	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		GGGGATGCTTCTTCAGGCCCA	0.473													49	160					0	0	1	0	0
LY75	4065	broad.mit.edu	37	2	160755484	160755484	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160755484C>T	uc002ubc.3	-	2	250	c.181G>A	c.(181-183)GAA>AAA	p.E61K	LY75_uc002ubb.3_Missense_Mutation_p.E61K|LY75_uc010fos.2_Missense_Mutation_p.E61K|LY75_uc010fot.1_Missense_Mutation_p.E61K	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	61	Extracellular (Potential).|Ricin B-type lectin.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TCCTCAGTTTCATCACAGTCG	0.478													17	117					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160826660	160826660	+	Missense_Mutation	SNP	G	A	A	rs113304621	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160826660G>A	uc002ube.1	-	18	2866	c.2659C>T	c.(2659-2661)CGC>TGC	p.R887C	PLA2R1_uc010zcp.1_Missense_Mutation_p.R887C|PLA2R1_uc002ubf.2_Missense_Mutation_p.R887C	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	887	Extracellular (Potential).|C-type lectin 5.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GGTTCATACCGAAATTCATCA	0.318													27	66					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160843796	160843796	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160843796G>A	uc002ube.1	-	12	2115	c.1908C>T	c.(1906-1908)CAC>CAT	p.H636H	PLA2R1_uc010zcp.1_Silent_p.H636H|PLA2R1_uc002ubf.2_Silent_p.H636H	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	636	Extracellular (Potential).|C-type lectin 3.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TTGCCTTAAAGTGCCGACAGT	0.483													7	40					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160862250	160862250	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160862250G>A	uc002ube.1	-	11	1954	c.1747C>T	c.(1747-1749)CAA>TAA	p.Q583*	PLA2R1_uc010zcp.1_Nonsense_Mutation_p.Q583*|PLA2R1_uc002ubf.2_Nonsense_Mutation_p.Q583*	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	583	Extracellular (Potential).|C-type lectin 3.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GTATCATTTTGGTCCTGAAGA	0.448													9	130					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160873224	160873224	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160873224C>T	uc002ube.1	-	9	1660	c.1453_splice	c.e9-1	p.E485_splice	PLA2R1_uc010zcp.1_Splice_Site_p.E485_splice|PLA2R1_uc002ubf.2_Splice_Site_p.E485_splice	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor						endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						AGTGTCCCTCCTACGGAGAAA	0.378													17	57					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160901448	160901448	+	Silent	SNP	G	A	A	rs147284017	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160901448G>A	uc002ube.1	-	2	537	c.330C>T	c.(328-330)CTC>CTT	p.L110L	PLA2R1_uc010zcp.1_Silent_p.L110L|PLA2R1_uc002ubf.2_Silent_p.L110L	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	110	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GTAAGGAAACGAGGGTGGAGT	0.542													28	77					0	0	1	0	0
ITGB6	3694	broad.mit.edu	37	2	160994281	160994281	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:160994281C>T	uc002ubh.2	-	10	1340	c.1324G>A	c.(1324-1326)GAT>AAT	p.D442N	ITGB6_uc010fou.2_Missense_Mutation_p.D442N|ITGB6_uc010zcq.1_Missense_Mutation_p.D400N|ITGB6_uc010fov.1_Missense_Mutation_p.D442N	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	442	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						TCCAGGGCATCCCCCAGCCCC	0.493													7	75					0	0	1	0	0
ITGB6	3694	broad.mit.edu	37	2	161025734	161025734	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:161025734G>A	uc002ubh.2	-	7	1022	c.1006C>T	c.(1006-1008)CAT>TAT	p.H336Y	ITGB6_uc010fow.1_RNA|ITGB6_uc010fou.2_Missense_Mutation_p.H336Y|ITGB6_uc010zcq.1_Missense_Mutation_p.H294Y|ITGB6_uc010fov.1_Missense_Mutation_p.H336Y	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	336	Extracellular (Potential).|VWFA.				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						TCATATAAATGAACTTGTTCT	0.323													32	83					0	0	1	0	0
TBR1	10716	broad.mit.edu	37	2	162280207	162280207	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:162280207C>T	uc002ubw.1	+	6	1820	c.1518C>T	c.(1516-1518)TTC>TTT	p.F506F	TBR1_uc010foy.2_Silent_p.F219F	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	506						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CCACGGACTTCGCGGGCAACG	0.731													3	7					0	0	1	0	0
TBR1	10716	broad.mit.edu	37	2	162280578	162280578	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:162280578G>A	uc002ubw.1	+	6	2191	c.1889G>A	c.(1888-1890)GGG>GAG	p.G630E	TBR1_uc010foy.2_Missense_Mutation_p.G343E	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	630						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						AGCGACTCGGGGATTTACGAG	0.687													3	15					0	0	1	0	0
SLC4A10	57282	broad.mit.edu	37	2	162696315	162696315	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:162696315G>A	uc002ubx.3	+	4	478	c.294G>A	c.(292-294)AGG>AGA	p.R98R	SLC4A10_uc010fpa.1_Silent_p.R110R|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Silent_p.R98R|SLC4A10_uc010zcs.1_Silent_p.R109R	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	98	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						CATCACAGAGGGTACAGTTTA	0.453													15	43					0	0	1	0	0
SLC4A10	57282	broad.mit.edu	37	2	162762229	162762229	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:162762229C>T	uc002ubx.3	+	15	2013	c.1829C>T	c.(1828-1830)GCC>GTC	p.A610V	SLC4A10_uc002uby.3_Missense_Mutation_p.A580V|SLC4A10_uc010zcs.1_Missense_Mutation_p.A591V	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	610	Helical; (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						ATACTTGTGGCCACAGATGCT	0.433													37	87					0	0	1	0	0
DPP4	1803	broad.mit.edu	37	2	162851822	162851822	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:162851822C>T	uc002ubz.2	-	24	2674	c.2113G>A	c.(2113-2115)GGA>AGA	p.G705R	DPP4_uc010fpb.2_Missense_Mutation_p.G381R	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	705	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	TCTGCTGTTCCATGAATAAGG	0.363													38	115					0	0	1	0	0
DPP4	1803	broad.mit.edu	37	2	162875326	162875326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:162875326G>A	uc002ubz.2	-	16	1894	c.1333C>T	c.(1333-1335)CTC>TTC	p.L445F	DPP4_uc010fpb.2_Missense_Mutation_p.L121F	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	445	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	TCACAACTGAGGCATGTCACT	0.403													32	83					0	0	1	0	0
GCG	2641	broad.mit.edu	37	2	163003880	163003880	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163003880C>T	uc002ucc.2	-	3	336	c.237G>A	c.(235-237)ATG>ATA	p.M79I		NM_002054	NP_002045	P01275	GLUC_HUMAN	glucagon preproprotein	79					cell proliferation|cellular response to glucagon stimulus|energy reserve metabolic process|feeding behavior|regulation of insulin secretion	plasma membrane|soluble fraction	hormone activity				0					Exenatide(DB01276)|Phentolamine(DB00692)	TCTTGGTATTCATCAACCACT	0.413													68	181					0	0	1	0	0
FAP	2191	broad.mit.edu	37	2	163027502	163027502	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163027502G>A	uc002ucd.2	-	26	2478	c.2270C>T	c.(2269-2271)TCT>TTT	p.S757F	FAP_uc010fpc.2_Missense_Mutation_p.S306F|FAP_uc010zct.1_Missense_Mutation_p.S732F|FAP_uc010fpd.2_Missense_Mutation_p.S236F	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	757	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						GTCTGACAAAGAGAAACACTG	0.413													15	149					0	0	1	0	0
FAP	2191	broad.mit.edu	37	2	163031436	163031436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163031436C>T	uc002ucd.2	-	22	2118	c.1910G>A	c.(1909-1911)GGA>GAA	p.G637E	FAP_uc010fpc.2_Missense_Mutation_p.G186E|FAP_uc010zct.1_Missense_Mutation_p.G612E|FAP_uc010fpd.2_Missense_Mutation_p.G116E	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	637	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						AAGACCAGTTCCAGATGCAAG	0.408													21	39					0	0	1	0	0
IFIH1	64135	broad.mit.edu	37	2	163138964	163138964	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163138964G>A	uc002uce.2	-	6	1440	c.1218C>T	c.(1216-1218)TCC>TCT	p.S406S		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	406	Helicase ATP-binding.				detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						TAATATCACAGGACTTGACAA	0.373													33	71					0	0	1	0	0
GCA	25801	broad.mit.edu	37	2	163213409	163213409	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163213409C>T	uc002ucg.2	+	5	624	c.448C>T	c.(448-450)CTT>TTT	p.L150F	GCA_uc010zcu.1_Missense_Mutation_p.L131F	NM_012198	NP_036330	P28676	GRAN_HUMAN	grancalcin, EF-hand calcium binding protein	150	EF-hand 3.				cellular membrane fusion	cytoplasm|plasma membrane	calcium ion binding|protein homodimerization activity				0						AGCCATTGGTCTTATGGGTAA	0.363													6	96					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163241435	163241435	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163241435C>T	uc002uch.1	-	13	2937	c.2725G>A	c.(2725-2727)GAT>AAT	p.D909N		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	909	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TCTTCAGGATCATTTGTACTG	0.338													36	70					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163250956	163250956	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163250956C>T	uc002uch.1	-	12	2865	c.2653G>A	c.(2653-2655)GGA>AGA	p.G885R		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	885	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CAGTTGTCTCCTTCTGAATCA	0.333													25	68					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163279938	163279938	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163279938G>A	uc002uch.1	-	9	2274	c.2062C>T	c.(2062-2064)CGC>TGC	p.R688C	KCNH7_uc002uci.2_Missense_Mutation_p.R681C	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	688	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TGGTGAAAGCGAATGAACTCT	0.438													26	189					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163302789	163302789	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163302789G>A	uc002uch.1	-	7	1505	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	KCNH7_uc002uci.2_Silent_p.F424F	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	431	Helical; Name=Segment S1; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CATTGAGGAGGAAGGCTGCAG	0.423													24	64					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163393520	163393520	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163393520G>A	uc002uch.1	-	3	590	c.378C>T	c.(376-378)ATC>ATT	p.I126I	KCNH7_uc002uci.2_Silent_p.I126I	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	126	Cytoplasmic (Potential).|PAC.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CAAAATTAATGATGAACATCA	0.363													61	139					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163693182	163693182	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:163693182C>T	uc002uch.1	-	2	384	c.172G>A	c.(172-174)GAT>AAT	p.D58N	KCNH7_uc002uci.2_Missense_Mutation_p.D58N	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	58	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TGCATGACATCTGGCCTGGAG	0.468													34	51					0	0	1	0	0
FIGN	55137	broad.mit.edu	37	2	164467888	164467888	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:164467888G>A	uc002uck.1	-	3	765	c.454C>T	c.(454-456)CCT>TCT	p.P152S		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	152						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						GCTACCCCAGGAGAGCTTCCT	0.512													14	104					0	0	1	0	0
GRB14	2888	broad.mit.edu	37	2	165349587	165349587	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:165349587G>A	uc002ucl.2	-	14	2123	c.1582C>T	c.(1582-1584)CCT>TCT	p.P528S	GRB14_uc010zcv.1_Missense_Mutation_p.P441S|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	528	SH2.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						AACTTGCAAGGAAGAACGCCC	0.383													16	62					0	0	1	0	0
GRB14	2888	broad.mit.edu	37	2	165383593	165383593	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:165383593C>T	uc002ucl.2	-	4	1075	c.534G>A	c.(532-534)GGG>GGA	p.G178G	GRB14_uc010zcv.1_Silent_p.G91G|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	178	Ras-associating.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						CTTCTTCTATCCCCCAGTTGG	0.328													28	74					0	0	1	0	0
GRB14	2888	broad.mit.edu	37	2	165383628	165383628	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:165383628G>A	uc002ucl.2	-	4	1040	c.499C>T	c.(499-501)CAC>TAC	p.H167Y	GRB14_uc010zcv.1_Missense_Mutation_p.H80Y|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	167	Ras-associating.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						ACCAGTTCGTGGTCTTCTATT	0.264													24	79					0	0	1	0	0
COBLL1	22837	broad.mit.edu	37	2	165559709	165559709	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:165559709G>A	uc010zcw.1	-	12	1569	c.1445C>T	c.(1444-1446)TCC>TTC	p.S482F	COBLL1_uc002ucp.2_Missense_Mutation_p.S416F|COBLL1_uc002ucq.2_Intron|COBLL1_uc010zcx.1_Intron|COBLL1_uc002ucs.1_RNA|COBLL1_uc002uco.2_Intron	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	454										ovary(2)|pancreas(1)	3						CTCCTGACTGGAAAGCCCAGG	0.488													13	121					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165947774	165947774	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:165947774C>T	uc002ucx.2	-	28	5381	c.4889G>A	c.(4888-4890)CGA>CAA	p.R1630Q	SCN3A_uc010zcy.1_Missense_Mutation_p.R113Q|SCN3A_uc002ucy.2_Missense_Mutation_p.R1581Q|SCN3A_uc002ucz.2_Missense_Mutation_p.R1581Q	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1630	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	ACGTAGGATTCGGCCAATCCT	0.478													52	113					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165948992	165948992	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:165948992C>T	uc002ucx.2	-	27	5071	c.4579G>A	c.(4579-4581)GTC>ATC	p.V1527I	SCN3A_uc010zcy.1_Missense_Mutation_p.V10I|SCN3A_uc002ucy.2_Missense_Mutation_p.V1478I|SCN3A_uc002ucz.2_Missense_Mutation_p.V1478I	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1527	Helical; Name=S1 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	ATATCAAAGACTTGTCTGGTT	0.383													20	46					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165956930	165956930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:165956930G>A	uc002ucx.2	-	22	4340	c.3848C>T	c.(3847-3849)TCT>TTT	p.S1283F	SCN3A_uc002ucy.2_Missense_Mutation_p.S1234F|SCN3A_uc002ucz.2_Missense_Mutation_p.S1234F|SCN3A_uc002uda.1_Missense_Mutation_p.S1103F|SCN3A_uc002udb.1_Missense_Mutation_p.S1103F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1283	Helical; Name=S3 of repeat III; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GCTAACCAAAGAAACCTACAA	0.373													7	34					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165984197	165984197	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:165984197C>T	uc002ucx.2	-	18	3829	c.3337G>A	c.(3337-3339)GAA>AAA	p.E1113K	SCN3A_uc002ucy.2_Missense_Mutation_p.E1064K|SCN3A_uc002ucz.2_Missense_Mutation_p.E1064K|SCN3A_uc002uda.1_Missense_Mutation_p.E933K|SCN3A_uc002udb.1_Missense_Mutation_p.E933K	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1113						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTTAAGTTTTCAAAGTCAGAC	0.358													38	78					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165984293	165984293	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:165984293C>T	uc002ucx.2	-	18	3733	c.3241G>A	c.(3241-3243)GAA>AAA	p.E1081K	SCN3A_uc002ucy.2_Missense_Mutation_p.E1032K|SCN3A_uc002ucz.2_Missense_Mutation_p.E1032K|SCN3A_uc002uda.1_Missense_Mutation_p.E901K|SCN3A_uc002udb.1_Missense_Mutation_p.E901K	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1081						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	ACGTATTTTTCAACACTGCTT	0.393													24	62					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	166012313	166012313	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166012313G>A	uc002ucx.2	-	10	1624	c.1132C>T	c.(1132-1134)CGA>TGA	p.R378*	SCN3A_uc002ucy.2_Nonsense_Mutation_p.R378*|SCN3A_uc002ucz.2_Nonsense_Mutation_p.R378*|SCN3A_uc002uda.1_Nonsense_Mutation_p.R247*|SCN3A_uc002udb.1_Nonsense_Mutation_p.R247*	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	378						voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.R378*(1)		ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GTCATGAGTCGAAATAGAGAC	0.413													27	76					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	166032863	166032863	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166032863G>A	uc002ucx.2	-	3	534	c.42C>T	c.(40-42)TTC>TTT	p.F14F	SCN3A_uc002ucy.2_Silent_p.F14F|SCN3A_uc002ucz.2_Silent_p.F14F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	14						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TAAAAAGGCGGAAGCTTTCAG	0.428													24	124					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166152463	166152463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166152463G>A	uc002udc.2	+	2	420	c.130G>A	c.(130-132)GAG>AAG	p.E44K	SCN2A_uc002udd.2_Missense_Mutation_p.E44K|SCN2A_uc002ude.2_Missense_Mutation_p.E44K	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	44					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ACGCAAGGATGAGGATGATGA	0.463													7	47					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166152571	166152571	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166152571G>A	uc002udc.2	+	2	528	c.238G>A	c.(238-240)GAT>AAT	p.D80N	SCN2A_uc002udd.2_Missense_Mutation_p.D80N|SCN2A_uc002ude.2_Missense_Mutation_p.D80N	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	80					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GCCCCTGGAGGATCTGGACCC	0.448													14	64					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166167070	166167071	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166167070_166167071GC>TT	uc002udc.2	+	7	1225_1226	c.935_936GC>TT	c.(934-936)AGC>ATT	p.S312I	SCN2A_uc002udd.2_Missense_Mutation_p.S312I|SCN2A_uc002ude.2_Missense_Mutation_p.S312I	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	312	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AGGACAGTGAGCATATTTAACT	0.287													17	47					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166170230	166170230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166170230C>T	uc002udc.2	+	9	1425	c.1135C>T	c.(1135-1137)CGT>TGT	p.R379C	SCN2A_uc002udd.2_Missense_Mutation_p.R379C|SCN2A_uc002ude.2_Missense_Mutation_p.R379C	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	379	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GTCCTTATTTCGTCTCATGAC	0.413													27	99					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166172174	166172174	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166172174C>T	uc002udc.2	+	11	1867	c.1577C>T	c.(1576-1578)TCG>TTG	p.S526L	SCN2A_uc002udd.2_Missense_Mutation_p.S526L|SCN2A_uc002ude.2_Missense_Mutation_p.S526L	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	526					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GTCCGAAAATCGGAATCTGAA	0.289													32	89					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166179783	166179783	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166179783G>A	uc002udc.2	+	12	2079	c.1789G>A	c.(1789-1791)GAG>AAG	p.E597K	SCN2A_uc002udd.2_Missense_Mutation_p.E597K|SCN2A_uc002ude.2_Missense_Mutation_p.E597K	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	597					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TGCTGATGATGAGCACAGCAC	0.547													16	59					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166183422	166183422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166183422G>A	uc002udc.2	+	13	2367	c.2077G>A	c.(2077-2079)GAT>AAT	p.D693N	SCN2A_uc002udd.2_Missense_Mutation_p.D693N|SCN2A_uc002ude.2_Missense_Mutation_p.D693N	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	693					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TGTTTCCATGGATTTATTGGA	0.373													13	136					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166221716	166221716	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166221716G>A	uc002udc.2	+	18	3753	c.3463G>A	c.(3463-3465)GAA>AAA	p.E1155K	SCN2A_uc002udd.2_Missense_Mutation_p.E1155K|SCN2A_uc002ude.2_Missense_Mutation_p.E1155K	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1155					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CGCCGAGGGAGAACAGCCTGA	0.413													23	77					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166229797	166229797	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166229797C>T	uc002udc.2	+	21	4202	c.3912C>T	c.(3910-3912)TCC>TCT	p.S1304S	SCN2A_uc002udd.2_Silent_p.S1304S|SCN2A_uc002ude.2_Silent_p.S1304S	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1304	III.|Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CCATCAAATCCCTCAGAACAC	0.408													29	125					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166234156	166234156	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166234156G>A	uc002udc.2	+	23	4594	c.4304G>A	c.(4303-4305)CGA>CAA	p.R1435Q	SCN2A_uc002udd.2_Missense_Mutation_p.R1435Q|SCN2A_uc002ude.2_Missense_Mutation_p.R1435Q	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1435	III.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GTTGATTCACGAAATGTAAGT	0.269													34	94					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166246007	166246007	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166246007G>A	uc002udc.2	+	27	5981	c.5691G>A	c.(5689-5691)ACG>ACA	p.T1897T	SCN2A_uc002udd.2_Silent_p.T1897T|SCN2A_uc002ude.2_Silent_p.T1897T	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1897					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AGCCCATTACGACCACGTTGA	0.448													28	53					0	0	1	0	0
CSRNP3	80034	broad.mit.edu	37	2	166536025	166536025	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166536025C>T	uc002udf.2	+	7	1896	c.1520C>T	c.(1519-1521)TCC>TTC	p.S507F	CSRNP3_uc002udg.2_Missense_Mutation_p.S507F	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	507					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						TGCTCCTCTTCCGAAAATGAT	0.512													19	49					0	0	1	0	0
TTC21B	79809	broad.mit.edu	37	2	166785697	166785697	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166785697G>A	uc002udk.2	-	11	1467	c.1334C>T	c.(1333-1335)CCT>CTT	p.P445L	TTC21B_uc002udl.2_Missense_Mutation_p.P445L	NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	445						cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						CAAGAAATCAGGATTTAGCTT	0.343													18	49					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166847761	166847761	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166847761C>T	uc010zcz.1	-	26	6009	c.5991G>A	c.(5989-5991)GGG>GGA	p.G1997G		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	2008						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	tcatttatttCCCTTTGGCTT	0.388													12	19					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166848510	166848510	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166848510G>A	uc010zcz.1	-	26	5260	c.5242C>T	c.(5242-5244)CCA>TCA	p.P1748S		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1759	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCAACAGATGGGTTCCCACAG	0.463													87	223					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166850864	166850864	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166850864C>T	uc010zcz.1	-	25	4629	c.4611G>A	c.(4609-4611)ATG>ATA	p.M1537I		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1548	Helical; Name=S1 of repeat IV; (By similarity).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AGATGAGAATCATGATGCTTA	0.368													15	41					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166870271	166870271	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166870271G>A	uc010zcz.1	-	18	3673	c.3655C>T	c.(3655-3657)CTT>TTT	p.L1219F	SCN1A_uc002udo.3_Missense_Mutation_p.L1099F|SCN1A_uc010fpk.2_Missense_Mutation_p.L1071F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1230	III.|Helical; Name=S1 of repeat III; (By similarity).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCACTACTAAGGAGAATCATG	0.378													25	66					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166892569	166892569	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166892569C>T	uc010zcz.1	-	16	3403	c.3385G>A	c.(3385-3387)GAA>AAA	p.E1129K	SCN1A_uc002udo.3_Missense_Mutation_p.E1009K|SCN1A_uc010fpk.2_Missense_Mutation_p.E981K	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1140						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TCTTTGCTTTCTTCCAGATCC	0.279													33	116					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166892662	166892662	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166892662G>A	uc010zcz.1	-	16	3310	c.3292C>T	c.(3292-3294)CCC>TCC	p.P1098S	SCN1A_uc002udo.3_Missense_Mutation_p.P978S|SCN1A_uc010fpk.2_Missense_Mutation_p.P950S	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1109						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GTAAGACTGGGGTTGTTTATG	0.358													56	114					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166893029	166893029	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166893029G>A	uc010zcz.1	-	16	2943	c.2925C>T	c.(2923-2925)CTC>CTT	p.L975L	SCN1A_uc002udo.3_Silent_p.L855L|SCN1A_uc010fpk.2_Silent_p.L827L	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	986	Helical; Name=S6 of repeat II; (By similarity).|II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AGGCCAGAAAGAGATTCAGGA	0.363													13	37					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166897921	166897921	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166897921G>A	uc010zcz.1	-	13	2220	c.2202C>T	c.(2200-2202)TTC>TTT	p.F734F	SCN1A_uc002udo.3_Silent_p.F614F|SCN1A_uc010fpk.2_Silent_p.F586F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	745						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCCAGATTAAGAATATGTTGG	0.373													38	126					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166900351	166900351	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166900351T>A	uc010zcz.1	-	11	1889	c.1871A>T	c.(1870-1872)CAG>CTG	p.Q624L	SCN1A_uc002udo.3_Missense_Mutation_p.Q493L|SCN1A_uc010fpk.2_Missense_Mutation_p.Q493L	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	624						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCTACTGGTCTGACTCAGGTT	0.537													19	70					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166900519	166900519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166900519C>T	uc010zcz.1	-	11	1721	c.1703G>A	c.(1702-1704)CGA>CAA	p.R568Q	SCN1A_uc002udo.3_Missense_Mutation_p.R437Q|SCN1A_uc010fpk.2_Missense_Mutation_p.R437Q	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	568						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TCTGCTATTTCGCCTTGGTGA	0.418													30	63					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166911222	166911222	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:166911222C>T	uc010zcz.1	-	4	546	c.528G>A	c.(526-528)AGG>AGA	p.R176R	SCN1A_uc002udo.3_Silent_p.R45R|SCN1A_uc010fpk.2_Silent_p.R45R	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	176	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AACAGAATCCCCTTGCAATAA	0.323													4	44					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167056312	167056312	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167056312G>A	uc010fpl.2	-	27	5145	c.4804C>T	c.(4804-4806)CGT>TGT	p.R1602C	uc002udp.2_RNA	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1613	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CTGGCAAGACGGATCACTCGG	0.428													47	133					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167056366	167056366	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167056366G>A	uc010fpl.2	-	27	5091	c.4750C>T	c.(4750-4752)CTA>TTA	p.L1584L	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1595	Helical; Name=S3 of repeat IV; (Potential).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AAATCAGCTAGAAACATACCT	0.378													34	87					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167060583	167060583	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167060583C>T	uc010fpl.2	-	26	4964	c.4623G>A	c.(4621-4623)GTG>GTA	p.V1541V	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1552	IV.|Helical; Name=S2 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TTATAAAAACCACATTTATCC	0.353													5	57					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167060643	167060643	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167060643C>T	uc010fpl.2	-	26	4904	c.4563G>A	c.(4561-4563)ATG>ATA	p.M1521I	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1532	IV.|Helical; Name=S1 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TTTCTACCATCATGGTTACCA	0.343													12	53					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167060669	167060669	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167060669G>A	uc010fpl.2	-	26	4878	c.4537C>T	c.(4537-4539)CTT>TTT	p.L1513F	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1524	IV.|Helical; Name=S1 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AGACAGATAAGAACCATGATA	0.328													24	48					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167085308	167085308	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167085308G>A	uc010fpl.2	-	22	4407	c.4066C>T	c.(4066-4068)CGT>TGT	p.R1356C	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1367	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CATTCGGAACGATTTGGAACT	0.403													54	205					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167129313	167129313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167129313G>A	uc010fpl.2	-	17	3255	c.2914C>T	c.(2914-2916)CCT>TCT	p.P972S	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	983						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TTTGCATCAGGGTCTTCTTCA	0.373													13	30					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167141089	167141089	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167141089C>T	uc010fpl.2	-	12	2189	c.1848G>A	c.(1846-1848)GGG>GGA	p.G616G	uc002udp.2_Intron|SCN9A_uc002udr.1_Silent_p.G487G|SCN9A_uc002uds.1_Silent_p.G487G|SCN9A_uc002udt.1_Silent_p.G487G	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	616						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TGTGCATTTTCCCGTTCACCG	0.587													20	51					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167142880	167142880	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167142880C>T	uc010fpl.2	-	11	1909	c.1568G>A	c.(1567-1569)CGA>CAA	p.R523Q	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.R394Q|SCN9A_uc002uds.1_Missense_Mutation_p.R394Q|SCN9A_uc002udt.1_Missense_Mutation_p.R394Q	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	523						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TTCATGTGCTCGCCTATGCCC	0.438													71	262					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167162335	167162335	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167162335C>T	uc010fpl.2	-	5	904	c.563G>A	c.(562-564)TGG>TAG	p.W188*	SCN9A_uc002udr.1_Nonsense_Mutation_p.W59*|SCN9A_uc002uds.1_Nonsense_Mutation_p.W59*|SCN9A_uc002udt.1_Nonsense_Mutation_p.W59*	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	188	Helical; Name=S3 of repeat I; (Potential).|I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CAGCCAGTTCCACGGGTCACG	0.373													20	62					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167279836	167279836	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167279836C>T	uc002udu.1	-	18	3087	c.2960G>A	c.(2959-2961)TGG>TAG	p.W987*	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	987	Helical; Name=S2 of repeat III; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ATATGCCATCCATTTTAGAAG	0.318													23	51					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167284402	167284402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167284402C>T	uc002udu.1	-	17	2876	c.2749G>A	c.(2749-2751)GGA>AGA	p.G917R	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	917					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						CAGATTTTTCCTTTCTTGGAT	0.408													11	47					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167298029	167298029	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167298029G>A	uc002udu.1	-	14	2161	c.2034C>T	c.(2032-2034)TTC>TTT	p.F678F	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	678					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACACATTCAGGAAGGAGTGGA	0.463													20	51					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167301376	167301376	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:167301376C>T	uc002udu.1	-	12	1649	c.1522G>A	c.(1522-1524)GAT>AAT	p.D508N	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	508	Helical; Name=S1 of repeat II; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						AGGAAAAGATCAGTAAATGGT	0.328													12	31					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168096465	168096465	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168096465G>A	uc002udx.2	+	5	977	c.959G>A	c.(958-960)GGA>GAA	p.G320E	XIRP2_uc010fpn.2_Missense_Mutation_p.G353E|XIRP2_uc010fpo.2_Missense_Mutation_p.G320E|XIRP2_uc010fpp.2_Missense_Mutation_p.G320E|XIRP2_uc002udy.2_Missense_Mutation_p.G145E|XIRP2_uc010fpq.2_Missense_Mutation_p.G98E|XIRP2_uc010fpr.2_Missense_Mutation_p.G98E	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	145					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATGTTCATGGAACAGAAATG	0.388													22	35					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168099318	168099318	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168099318C>T	uc002udx.2	+	8	1434	c.1416C>T	c.(1414-1416)TCC>TCT	p.S472S	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.S297S|XIRP2_uc010fpq.2_Silent_p.S250S|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	297					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TTTCCCAGTCCCCTGAACTGC	0.413													43	75					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168099642	168099642	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168099642C>T	uc002udx.2	+	8	1758	c.1740C>T	c.(1738-1740)ATC>ATT	p.I580I	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.I405I|XIRP2_uc010fpq.2_Silent_p.I358I|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	405	Xin 2.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TTAGATGGATCTTTGAGAATC	0.408													20	65					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168099726	168099726	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168099726C>T	uc002udx.2	+	8	1842	c.1824C>T	c.(1822-1824)ATC>ATT	p.I608I	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.I433I|XIRP2_uc010fpq.2_Silent_p.I386I|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	433					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATCAAGAAATCATTGCTGGTG	0.423													26	82					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168100700	168100700	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168100700G>A	uc002udx.2	+	8	2816	c.2798G>A	c.(2797-2799)CGA>CAA	p.R933Q	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R758Q|XIRP2_uc010fpq.2_Missense_Mutation_p.R711Q|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	758					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GAGTACACACGAACAGTGAAA	0.333													25	51					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168101389	168101389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168101389C>T	uc002udx.2	+	8	3505	c.3487C>T	c.(3487-3489)CGT>TGT	p.R1163C	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R988C|XIRP2_uc010fpq.2_Missense_Mutation_p.R941C|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	988	Xin 18.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGGGGATGTTCGTACAGCATG	0.403													17	81					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168102212	168102212	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168102212G>A	uc002udx.2	+	8	4328	c.4310G>A	c.(4309-4311)CGA>CAA	p.R1437Q	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R1262Q|XIRP2_uc010fpq.2_Missense_Mutation_p.R1215Q|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1262					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AACTATATACGAACAGTAAGT	0.338													13	53					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168102316	168102316	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168102316G>A	uc002udx.2	+	8	4432	c.4414G>A	c.(4414-4416)GAA>AAA	p.E1472K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E1297K|XIRP2_uc010fpq.2_Missense_Mutation_p.E1250K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1297					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTTAGAATATGAAAATATCAA	0.378													31	85					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168102445	168102445	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168102445G>A	uc002udx.2	+	8	4561	c.4543G>A	c.(4543-4545)GAA>AAA	p.E1515K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E1340K|XIRP2_uc010fpq.2_Missense_Mutation_p.E1293K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1340					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AATGACCAAGGAAGAAATCCC	0.358													50	100					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168103420	168103420	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168103420G>A	uc002udx.2	+	8	5536	c.5518G>A	c.(5518-5520)GAT>AAT	p.D1840N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D1665N|XIRP2_uc010fpq.2_Missense_Mutation_p.D1618N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1665					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TATAAAAGGTGATTTGACATC	0.388													37	107					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168103648	168103648	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168103648G>A	uc002udx.2	+	8	5764	c.5746G>A	c.(5746-5748)GAG>AAG	p.E1916K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E1741K|XIRP2_uc010fpq.2_Missense_Mutation_p.E1694K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1741	Potential.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCTGAAAAAGGAGCTTCTCAA	0.353													16	51					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168104111	168104111	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168104111G>A	uc002udx.2	+	8	6227	c.6209G>A	c.(6208-6210)GGA>GAA	p.G2070E	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.G1895E|XIRP2_uc010fpq.2_Missense_Mutation_p.G1848E|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1895					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATACTACAGGAGAACAGCAT	0.378													13	76					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168105525	168105525	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168105525G>A	uc002udx.2	+	8	7641	c.7623G>A	c.(7621-7623)AAG>AAA	p.K2541K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.K2366K|XIRP2_uc010fpq.2_Silent_p.K2319K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2366					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GAAAATTTAAGACACCTTTAA	0.318													43	125					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168107590	168107590	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168107590C>T	uc002udx.2	+	8	9706	c.9688C>T	c.(9688-9690)CGT>TGT	p.R3230C	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R3055C|XIRP2_uc010fpq.2_Missense_Mutation_p.R3008C|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3055					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATAGAAACTCGTGGTAGGGA	0.448													30	74					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168108280	168108280	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168108280G>A	uc002udx.2	+	8	10396	c.10378G>A	c.(10378-10380)GAT>AAT	p.D3460N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D3285N|XIRP2_uc010fpq.2_Missense_Mutation_p.D3238N|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3285					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AACCTATGAGGATGTCATTGC	0.398													16	44					0	0	1	0	0
B3GALT1	8708	broad.mit.edu	37	2	168725844	168725844	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168725844G>A	uc002udz.1	+	2	646	c.295G>A	c.(295-297)GAG>AAG	p.E99K		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	99	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						GGCAATCAGAGAGACGTGGGG	0.463													24	79					0	0	1	0	0
B3GALT1	8708	broad.mit.edu	37	2	168726366	168726366	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:168726366C>T	uc002udz.1	+	2	1168	c.817C>T	c.(817-819)CGA>TGA	p.R273*		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	273	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						ACTGTGTCTTCGAAAGCTGGG	0.463													26	64					0	0	1	0	0
LASS6	253782	broad.mit.edu	37	2	169417815	169417815	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169417815G>A	uc002ueb.1	+	3	514	c.390G>A	c.(388-390)ACG>ACA	p.T130T	LASS6_uc002uec.1_Silent_p.T130T	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	130	Cytoplasmic (Potential).|TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						GCACGCTGACGAGGTTCTGTG	0.463													39	112					0	0	1	0	0
LASS6	253782	broad.mit.edu	37	2	169487532	169487532	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169487532G>A	uc002ueb.1	+	4	569	c.445G>A	c.(445-447)GGA>AGA	p.G149R	LASS6_uc002uec.1_Missense_Mutation_p.G149R	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	149	Cytoplasmic (Potential).|TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						ATTTACCTACGGAGTCAGATT	0.299													21	92					0	0	1	0	0
LASS6	253782	broad.mit.edu	37	2	169622102	169622102	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169622102G>A	uc002ueb.1	+	9	970	c.846G>A	c.(844-846)TGG>TGA	p.W282*	LASS6_uc002uec.1_Nonsense_Mutation_p.W282*	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	282	TLC.|Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						TTTTCCTTAGGGTGTTAAATA	0.418													23	76					0	0	1	0	0
NOSTRIN	115677	broad.mit.edu	37	2	169690823	169690824	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169690823_169690824GG>AT	uc002ueg.2	+	7	496_497	c.492_493GG>AT	c.(490-495)AAGGAG>AAATAG	p.E165*	NOSTRIN_uc002uef.2_Nonsense_Mutation_p.E165*|NOSTRIN_uc002uei.2_Nonsense_Mutation_p.E48*|NOSTRIN_uc010fpu.2_Nonsense_Mutation_p.E137*|NOSTRIN_uc002ueh.2_Nonsense_Mutation_p.E87*|NOSTRIN_uc002uej.2_Nonsense_Mutation_p.E48*	NM_001039724	NP_001034813	Q8IVI9	NOSTN_HUMAN	nitric oxide synthase trafficker isoform 2	165	Potential.				endocytosis|nitric oxide metabolic process|regulation of nitric-oxide synthase activity	cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	protein binding				0						TGACTGAGAAGGAGAAGCGGAA	0.46													14	56					0	0	1	0	0
NOSTRIN	115677	broad.mit.edu	37	2	169711903	169711903	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169711903G>A	uc002ueg.2	+	11	901	c.897G>A	c.(895-897)AAG>AAA	p.K299K	NOSTRIN_uc002uef.2_Silent_p.K356K|NOSTRIN_uc002uei.2_Silent_p.K182K|NOSTRIN_uc010fpu.2_Silent_p.K271K|NOSTRIN_uc002ueh.2_Silent_p.K221K|NOSTRIN_uc002uej.2_Silent_p.K182K|NOSTRIN_uc002uek.2_5'Flank	NM_001039724	NP_001034813	Q8IVI9	NOSTN_HUMAN	nitric oxide synthase trafficker isoform 2	299					endocytosis|nitric oxide metabolic process|regulation of nitric-oxide synthase activity	cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	protein binding				0						AGAGACGAAAGTCTTTACTAA	0.388													10	66					0	0	1	0	0
G6PC2	57818	broad.mit.edu	37	2	169759040	169759040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169759040C>T	uc002uem.2	+	2	396	c.304C>T	c.(304-306)CCT>TCT	p.P102S	G6PC2_uc002uen.2_Missense_Mutation_p.P102S|G6PC2_uc010fpv.2_Intron	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	102	Lumenal (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						TGAACAGTTCCCTACTACATG	0.403													40	74					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169780186	169780186	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169780186C>T	uc002ueo.1	-	28	4038	c.3912G>A	c.(3910-3912)ATG>ATA	p.M1304I	ABCB11_uc010zda.1_Missense_Mutation_p.M722I|ABCB11_uc010zdb.1_Missense_Mutation_p.M780I	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1304	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTTTTTGGGCCATCAGTTCTT	0.512													15	39					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169780299	169780299	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169780299C>T	uc002ueo.1	-	28	3925	c.3799G>A	c.(3799-3801)GGT>AGT	p.G1267S	ABCB11_uc010zda.1_Missense_Mutation_p.G685S|ABCB11_uc010zdb.1_Missense_Mutation_p.G743S	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1267	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CAGGTCCGACCCTCTCTGGCT	0.527													10	37					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169783678	169783678	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169783678C>G	uc002ueo.1	-	26	3732	c.3606G>C	c.(3604-3606)ATG>ATC	p.M1202I	ABCB11_uc010zda.1_Missense_Mutation_p.M620I|ABCB11_uc010zdb.1_Missense_Mutation_p.M678I	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1202	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTGGGAGTGACATGACAAAAT	0.408													18	181					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169787178	169787178	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169787178C>G	uc002ueo.1	-	25	3534	c.3408G>C	c.(3406-3408)AAG>AAC	p.K1136N	ABCB11_uc010zda.1_Missense_Mutation_p.K578N|ABCB11_uc010zdb.1_Missense_Mutation_p.K612N	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1136	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GGCTTACCACCTTCCCTTGAT	0.463													7	25					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169791926	169791926	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169791926C>T	uc002ueo.1	-	23	2950	c.2824G>A	c.(2824-2826)GAA>AAA	p.E942K	ABCB11_uc010zda.1_Missense_Mutation_p.E384K|ABCB11_uc010zdb.1_Missense_Mutation_p.E418K	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	942	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTGAGGGCTTCATTTGTAATC	0.448													61	187					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169801120	169801120	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169801120G>A	uc002ueo.1	-	21	2731	c.2605C>T	c.(2605-2607)CAA>TAA	p.Q869*	ABCB11_uc010zda.1_Nonsense_Mutation_p.Q311*|ABCB11_uc010zdb.1_Nonsense_Mutation_p.Q345*	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	869	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTCACCCCTTGAACTTGGGAA	0.433													23	226					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169825875	169825875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169825875C>T	uc002ueo.1	-	16	2122	c.1996G>A	c.(1996-1998)GAA>AAA	p.E666K	ABCB11_uc010zda.1_Missense_Mutation_p.E108K|ABCB11_uc010zdb.1_Missense_Mutation_p.E142K	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	666	Cytoplasmic (Potential).|Interaction with HAX1 (By similarity).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	ATGTCCTCTTCATTAAGAGCT	0.318													11	26					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169826714	169826714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169826714G>A	uc002ueo.1	-	15	1776	c.1650C>T	c.(1648-1650)ACC>ACT	p.T550T	ABCB11_uc010zda.1_5'UTR|ABCB11_uc010zdb.1_Silent_p.T26T	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	550	Cytoplasmic (Potential).|ABC transporter 1.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTCCAACAAGGGTGTCAAATT	0.463													6	24					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169842719	169842719	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169842719G>A	uc002ueo.1	-	10	1110	c.984C>T	c.(982-984)TTC>TTT	p.F328F		NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	328	ABC transmembrane type-1 1.|Helical; (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GACACCACACGAATCCAGTAA	0.453													34	76					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169842736	169842736	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169842736C>T	uc002ueo.1	-	10	1093	c.967G>A	c.(967-969)GGA>AGA	p.G323R		NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	323	ABC transmembrane type-1 1.|Helical; (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GTAAAGAATCCCATCACTATT	0.443													12	112					0	0	1	0	0
DHRS9	10170	broad.mit.edu	37	2	169939973	169939973	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169939973C>T	uc002uep.2	+	6	1952	c.448C>T	c.(448-450)CCT>TCT	p.P150S	DHRS9_uc002ueq.2_Missense_Mutation_p.P150S|DHRS9_uc010zdc.1_Missense_Mutation_p.P210S|DHRS9_uc010zdd.1_Missense_Mutation_p.P150S|DHRS9_uc010zde.1_Missense_Mutation_p.P150S	NM_005771	NP_005762	Q9BPW9	DHRS9_HUMAN	NADP-dependent retinol dehydrogenase/reductase	150					9-cis-retinoic acid biosynthetic process|androgen metabolic process|epithelial cell differentiation|progesterone metabolic process|retinol metabolic process	integral to endoplasmic reticulum membrane|microsome	alcohol dehydrogenase (NAD) activity|binding|racemase and epimerase activity|retinol dehydrogenase activity|testosterone dehydrogenase (NAD+) activity				0						AAATATGCTTCCTTTGGTCAA	0.483													39	115					0	0	1	0	0
DHRS9	10170	broad.mit.edu	37	2	169940013	169940013	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169940013C>T	uc002uep.2	+	6	1992	c.488C>T	c.(487-489)TCC>TTC	p.S163F	DHRS9_uc002ueq.2_Missense_Mutation_p.S163F|DHRS9_uc010zdc.1_Missense_Mutation_p.S223F|DHRS9_uc010zdd.1_Missense_Mutation_p.S163F|DHRS9_uc010zde.1_Missense_Mutation_p.S163F	NM_005771	NP_005762	Q9BPW9	DHRS9_HUMAN	NADP-dependent retinol dehydrogenase/reductase	163					9-cis-retinoic acid biosynthetic process|androgen metabolic process|epithelial cell differentiation|progesterone metabolic process|retinol metabolic process	integral to endoplasmic reticulum membrane|microsome	alcohol dehydrogenase (NAD) activity|binding|racemase and epimerase activity|retinol dehydrogenase activity|testosterone dehydrogenase (NAD+) activity				0						ATTAATGTCTCCAGTGTTGGA	0.418													31	90					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	169985283	169985283	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169985283G>A	uc002ues.2	-	79	14071	c.13858C>T	c.(13858-13860)CCT>TCT	p.P4620S		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4620	SH3-binding (Potential).|Cytoplasmic (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GGCTTAGCAGGGAGCGAAGGT	0.453													46	129					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	169995191	169995191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169995191C>T	uc002ues.2	-	75	13627	c.13414G>A	c.(13414-13416)GAA>AAA	p.E4472K		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4472	Cytoplasmic (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TTCCCATTTTCAGAGGGCTTG	0.418													12	68					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	169997050	169997050	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:169997050C>T	uc002ues.2	-	72	13327	c.13114G>A	c.(13114-13116)GAA>AAA	p.E4372K		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4372	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ATAGGCAGTTCGATGGCTGCA	0.547													12	29					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170003441	170003441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170003441C>T	uc002ues.2	-	69	12832	c.12619G>A	c.(12619-12621)GAA>AAA	p.E4207K		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4207	LDL-receptor class B 36.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ATTTTAGGTTCCTTTCCCCAG	0.473													12	33					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170011071	170011071	+	Missense_Mutation	SNP	C	T	T	rs147817392		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170011071C>T	uc002ues.2	-	66	12407	c.12194G>A	c.(12193-12195)CGA>CAA	p.R4065Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4065	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ATTATATTTTCGAATTCGGAC	0.378													16	93					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170030438	170030438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170030438C>T	uc002ues.2	-	56	11218	c.11005G>A	c.(11005-11007)GAA>AAA	p.E3669K		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3669	LDL-receptor class A 29.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CTGCATTCTTCAATGGGCTCA	0.557													37	87					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170030620	170030620	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170030620G>A	uc002ues.2	-	56	11036	c.10823C>T	c.(10822-10824)CCA>CTA	p.P3608L		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3608	LDL-receptor class A 28.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCAGGATTCTGGGATGCAACG	0.517													20	43					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170037998	170037998	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170037998C>T	uc002ues.2	-	52	10342	c.10129G>A	c.(10129-10131)GAT>AAT	p.D3377N		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3377	LDL-receptor class B 33.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TAGAGTAGATCATTGGTGTAA	0.418													22	78					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170044495	170044495	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170044495C>T	uc002ues.2	-	49	9526	c.9313G>A	c.(9313-9315)GAT>AAT	p.D3105N		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3105	Extracellular (Potential).|LDL-receptor class A 25.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCTTTCTCATCGCTGTTGTCC	0.483													23	95					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170062006	170062006	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170062006G>A	uc002ues.2	-	41	7911	c.7698C>T	c.(7696-7698)TAC>TAT	p.Y2566Y		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2566	LDL-receptor class B 28.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CATCCACCCAGTAGAGAAGGT	0.483													20	95					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170062088	170062088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170062088C>T	uc002ues.2	-	41	7829	c.7616G>A	c.(7615-7617)GGA>GAA	p.G2539E		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2539	LDL-receptor class B 27.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GCGGAAGTTTCCTCCCAATGT	0.493													32	95					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170063345	170063345	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170063345C>T	uc002ues.2	-	39	7098	c.6885G>A	c.(6883-6885)AGG>AGA	p.R2295R		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2295	LDL-receptor class B 24.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TTTTCAAATTCCTATCTACCC	0.413													37	74					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170066148	170066148	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170066148C>T	uc002ues.2	-	38	6497	c.6284G>A	c.(6283-6285)CGA>CAA	p.R2095Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2095	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CAGTGCGTTTCGTCCTGGAAG	0.413													13	48					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170076982	170076982	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170076982G>C	uc002ues.2	-	34	5843	c.5630C>G	c.(5629-5631)ACT>AGT	p.T1877S		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1877	Extracellular (Potential).|LDL-receptor class B 16.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AGGATCAACAGTTATGCCAAT	0.418													20	47					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170092404	170092404	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170092404C>T	uc002ues.2	-	29	5079	c.4866G>A	c.(4864-4866)ATG>ATA	p.M1622I		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1622	LDL-receptor class B 13.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CACAAAAGTCCATGTAATCAA	0.443													34	77					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170096247	170096247	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170096247G>A	uc002ues.2	-	26	4297	c.4084C>T	c.(4084-4086)CAC>TAC	p.H1362Y		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1362	Extracellular (Potential).|EGF-like 5.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ACACACTCGTGAGTACAACCA	0.383													26	69					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170103479	170103479	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170103479G>A	uc002ues.2	-	21	3139	c.2926C>T	c.(2926-2928)CAA>TAA	p.Q976*	LRP2_uc010zdf.1_Nonsense_Mutation_p.Q839*	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	976	EGF-like 4.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TGCGTGGGTTGATTACAGGCG	0.502													8	34					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170115597	170115597	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170115597C>T	uc002ues.2	-	17	2664	c.2451G>A	c.(2449-2451)ACG>ACA	p.T817T	LRP2_uc010zdf.1_Silent_p.T680T	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	817	LDL-receptor class B 7.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CTGTGCGTCTCGTTTTATCAG	0.393													64	138					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170139474	170139474	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170139474C>T	uc002ues.2	-	10	1293	c.1080G>A	c.(1078-1080)CAG>CAA	p.Q360Q	LRP2_uc010zdf.1_Silent_p.Q360Q	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	360	EGF-like 2.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TTTCACACTTCTGGTCACAAA	0.433													64	152					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170148796	170148796	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170148796C>T	uc002ues.2	-	7	949	c.736G>A	c.(736-738)GAC>AAC	p.D246N	LRP2_uc010zdf.1_Missense_Mutation_p.D246N	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	246	LDL-receptor class A 6.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCTTTACAGTCATCTTCTCCA	0.438													27	85					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170177374	170177374	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170177374G>A	uc002ues.2	-	2	313	c.100C>T	c.(100-102)CGC>TGC	p.R34C	LRP2_uc010zdf.1_Missense_Mutation_p.R34C	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	34	LDL-receptor class A 1.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CTTCCACAGCGAAAATGCGCA	0.393													36	56					0	0	1	0	0
UBR3	130507	broad.mit.edu	37	2	170863617	170863617	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170863617C>T	uc010zdi.1	+	28	4147	c.4147C>T	c.(4147-4149)CCT>TCT	p.P1383S	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Missense_Mutation_p.P204S|UBR3_uc002uft.3_Missense_Mutation_p.P236S|UBR3_uc010zdj.1_Missense_Mutation_p.P45S	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1383					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						GGAAAATAACCCTTGGCAACG	0.483													11	40					0	0	1	0	0
UBR3	130507	broad.mit.edu	37	2	170897468	170897468	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170897468T>C	uc010zdi.1	+	32	4633	c.4633T>C	c.(4633-4635)TTA>CTA	p.L1545L	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Silent_p.L366L|UBR3_uc002uft.3_Silent_p.L402L|UBR3_uc010zdj.1_Silent_p.L236L|UBR3_uc002ufu.3_Silent_p.L51L	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1545					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						CATCCAGATCTTAATGATGCC	0.328													8	75					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171055856	171055856	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:171055856G>A	uc002ufy.2	+	2	284	c.141G>A	c.(139-141)AAG>AAA	p.K47K	MYO3B_uc002ufv.2_Silent_p.K34K|MYO3B_uc010fqb.1_Silent_p.K34K|MYO3B_uc002ufz.2_Silent_p.K47K|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Silent_p.K34K	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	47	Protein kinase.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity	p.K47fs*16(1)		lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						TAACTAACAAGAGAGATGGGA	0.418													9	48					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171071264	171071264	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:171071264G>A	uc002ufy.2	+	5	595	c.452G>A	c.(451-453)CGA>CAA	p.R151Q	MYO3B_uc002ufv.2_Missense_Mutation_p.R138Q|MYO3B_uc010fqb.1_Missense_Mutation_p.R138Q|MYO3B_uc002ufz.2_Missense_Mutation_p.R151Q|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Missense_Mutation_p.R138Q	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	151	Protein kinase.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CACAACAACCGAATCATCCAC	0.428													19	51					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171092543	171092543	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:171092543C>T	uc002ufy.2	+	7	789	c.646C>T	c.(646-648)CGC>TGC	p.R216C	MYO3B_uc002ufv.2_Missense_Mutation_p.R203C|MYO3B_uc010fqb.1_Missense_Mutation_p.R203C|MYO3B_uc002ufz.2_Missense_Mutation_p.R216C|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Missense_Mutation_p.R203C	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	216	Protein kinase.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CTATGACGCTCGCTGTGACGT	0.493											OREG0014376	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	110					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171258191	171258191	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:171258191G>A	uc002ufy.2	+	18	2262	c.2119G>A	c.(2119-2121)GAA>AAA	p.E707K	MYO3B_uc002ufv.2_Missense_Mutation_p.E694K|MYO3B_uc010fqb.1_Missense_Mutation_p.E694K|MYO3B_uc002ufz.2_Missense_Mutation_p.E707K|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	707	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCAGCCAGACGAAAACATATG	0.527													13	34					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171264339	171264339	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:171264339C>T	uc002ufy.2	+	22	2778	c.2635C>T	c.(2635-2637)CCT>TCT	p.P879S	MYO3B_uc002ufv.2_Missense_Mutation_p.P866S|MYO3B_uc010fqb.1_Missense_Mutation_p.P866S|MYO3B_uc002ufz.2_Missense_Mutation_p.P879S|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	879	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CTTCTCAATCCCTCTGACCAA	0.463													57	148					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171323129	171323129	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:171323129G>A	uc002ufy.2	+	25	3065	c.2922G>A	c.(2920-2922)CTG>CTA	p.L974L	MYO3B_uc002ufv.2_Silent_p.L961L|MYO3B_uc010fqb.1_Silent_p.L961L|MYO3B_uc002ufz.2_Silent_p.L974L|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_Intron	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	974	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						AGAGGGTGCTGGCCCAGCTCC	0.557													35	121					0	0	1	0	0
GAD1	2571	broad.mit.edu	37	2	171686121	171686121	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:171686121C>T	uc002ugi.2	+	4	704	c.282C>T	c.(280-282)GAC>GAT	p.D94D	GAD1_uc002ugh.2_Silent_p.D94D	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	94					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CAGAGACTGACTTCTCTAATC	0.517													33	103					0	0	1	0	0
GAD1	2571	broad.mit.edu	37	2	171700565	171700565	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:171700565G>A	uc002ugi.2	+	7	1071	c.649G>A	c.(649-651)GAA>AAA	p.E217K		NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	217					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GTTTACATATGAAATTGCACC	0.358													18	59					0	0	1	0	0
TLK1	9874	broad.mit.edu	37	2	171871371	171871371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:171871371C>T	uc002ugn.2	-	13	1796	c.1324G>A	c.(1324-1326)GAT>AAT	p.D442N	TLK1_uc002ugo.2_Missense_Mutation_p.D463N|TLK1_uc002ugp.2_Missense_Mutation_p.D394N|TLK1_uc002ugq.2_RNA|TLK1_uc010zdn.1_Missense_Mutation_p.D346N	NM_012290	NP_036422	Q9UKI8	TLK1_HUMAN	tousled-like kinase 1 isoform 1	442	Potential.				cell cycle|chromatin modification|intracellular protein transport|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(1)	1						TGTGAATTATCTTCATTGTTT	0.338													29	89					0	0	1	0	0
METTL8	79828	broad.mit.edu	37	2	172195966	172195966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:172195966G>A	uc010zdo.1	-	4	475	c.334C>T	c.(334-336)CCT>TCT	p.P112S	METTL8_uc002ugu.3_Missense_Mutation_p.P112S|METTL8_uc002ugv.3_Missense_Mutation_p.P112S|METTL8_uc002ugt.3_Missense_Mutation_p.P112S|METTL8_uc002ugs.3_Missense_Mutation_p.P62S|METTL8_uc010zdp.1_Missense_Mutation_p.P67S	NM_024770	NP_079046	B3KW44	B3KW44_HUMAN	methyltransferase like 8	112							methyltransferase activity			ovary(1)	1						AGAATTTCAGGAAATTCCCTC	0.358													47	101					0	0	1	0	0
CYBRD1	79901	broad.mit.edu	37	2	172409859	172409859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:172409859C>T	uc002ugy.3	+	3	596	c.406C>T	c.(406-408)CTT>TTT	p.L136F	CYBRD1_uc002ugz.3_Missense_Mutation_p.S66F	NM_024843	NP_079119	Q53TN4	CYBR1_HUMAN	cytochrome b reductase 1 isoform 1	136	Helical; Name=4; (Potential).|Cytochrome b561.				cellular iron ion homeostasis|electron transport chain|transmembrane transport	integral to membrane	ferric-chelate reductase activity|metal ion binding				0						TGTTTAGCTTCTTTCAGGTTT	0.328													22	70					0	0	1	0	0
SLC25A12	8604	broad.mit.edu	37	2	172644360	172644360	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:172644360G>A	uc002uhh.2	-	16	1772	c.1683C>T	c.(1681-1683)ATC>ATT	p.I561I	SLC25A12_uc010fqh.2_Silent_p.I454I	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12	561	Solcar 3.				gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	TGAAACAGTCGATGACACCAC	0.577													25	58					0	0	1	0	0
HAT1	8520	broad.mit.edu	37	2	172803273	172803273	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:172803273C>T	uc002uhi.2	+	3	234	c.158C>T	c.(157-159)CCT>CTT	p.P53L	HAT1_uc010fqi.2_5'UTR|HAT1_uc002uhj.2_Intron	NM_003642	NP_003633	O14929	HAT1_HUMAN	histone acetyltransferase 1	53					chromatin silencing at telomere|DNA packaging	cytoplasm|nuclear matrix|nucleoplasm	histone acetyltransferase activity|protein binding			large_intestine(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.216)			ACTTTCTTTCCTGAGTATACC	0.279													29	99					0	0	1	0	0
ITGA6	3655	broad.mit.edu	37	2	173351826	173351826	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:173351826A>T	uc002uhp.1	+	14	2133	c.1930A>T	c.(1930-1932)ACC>TCC	p.T644S	ITGA6_uc010zdy.1_Missense_Mutation_p.T525S|ITGA6_uc002uho.1_Missense_Mutation_p.T644S|ITGA6_uc010fqm.1_Missense_Mutation_p.T290S	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	683	Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			TAAATTTTGCACCCGAGAAGG	0.358													11	45					0	0	1	0	0
ITGA6	3655	broad.mit.edu	37	2	173352339	173352339	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:173352339C>T	uc002uhp.1	+	16	2428	c.2225C>T	c.(2224-2226)CCT>CTT	p.P742L	ITGA6_uc010zdy.1_Missense_Mutation_p.P623L|ITGA6_uc002uho.1_Missense_Mutation_p.P742L|ITGA6_uc010fqm.1_Missense_Mutation_p.P388L	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	781	Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			CTCGGAAATCCTTTTAAAAGA	0.408													17	57					0	0	1	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173679074	173679074	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:173679074C>T	uc002uhv.3	+	4	552	c.365C>T	c.(364-366)CCC>CTC	p.P122L	RAPGEF4_uc002uhu.2_Missense_Mutation_p.P122L|RAPGEF4_uc010fqn.2_Missense_Mutation_p.P105L	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	122	cAMP 1.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			GACAACACACCCCGCCATGCA	0.517													38	94					0	0	1	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173787010	173787010	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:173787010G>A	uc002uhv.3	+	6	706	c.519G>A	c.(517-519)AGG>AGA	p.R173R	RAPGEF4_uc002uhu.2_Silent_p.R173R|RAPGEF4_uc002uhw.3_Silent_p.R29R|RAPGEF4_uc010zec.1_Silent_p.R20R|RAPGEF4_uc010zed.1_Silent_p.R20R|RAPGEF4_uc010zee.1_Silent_p.R20R|RAPGEF4_uc010fqo.2_Silent_p.R20R|RAPGEF4_uc010zef.1_5'UTR	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	173					blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			CTCCTTTAGGGATTCCTGACA	0.368													82	207					0	0	1	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173883494	173883494	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:173883494G>A	uc002uhv.3	+	22	2306	c.2119G>A	c.(2119-2121)GAG>AAG	p.E707K	RAPGEF4_uc002uhw.3_Missense_Mutation_p.E563K	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	707					blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			GGGCTCCGGGGAGGGCCTGAT	0.502													19	100					0	0	1	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173916423	173916423	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:173916423G>A	uc002uhv.3	+	31	3151	c.2964G>A	c.(2962-2964)CGG>CGA	p.R988R	RAPGEF4_uc002uhw.3_Silent_p.R844R	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	988	Ras-GEF.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			GTTATGTACGGCAATTAAATG	0.408													24	60					0	0	1	0	0
SP3	6670	broad.mit.edu	37	2	174783444	174783444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:174783444G>A	uc002uig.2	-	5	1873	c.1709C>T	c.(1708-1710)ACC>ATC	p.T570I	SP3_uc002uie.2_Missense_Mutation_p.T502I|SP3_uc002uif.2_Missense_Mutation_p.T517I|SP3_uc010zel.1_Missense_Mutation_p.T567I	NM_003111	NP_003102	Q02447	SP3_HUMAN	Sp3 transcription factor isoform 1	570	Repressor domain.				negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	protein binding|zinc ion binding		EWSR1/SP3(3)	soft_tissue(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.185)			TAGGTCATTGGTATTCAAGGT	0.428													44	113					0	0	1	0	0
CIR1	9541	broad.mit.edu	37	2	175213483	175213483	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:175213483G>A	uc002uim.2	-	10	1188	c.1095C>T	c.(1093-1095)AGC>AGT	p.S365S	CIR1_uc002uin.2_Silent_p.S239S|CIR1_uc002uio.2_Silent_p.S192S|CIR1_uc002uip.2_Silent_p.S254S	NM_004882	NP_004873	Q86X95	CIR1_HUMAN	CBF1 interacting corepressor	365	Lys/Ser-rich.				mRNA processing|negative regulation of transcription, DNA-dependent|RNA splicing	nuclear speck	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			large_intestine(1)	1						TCTTCTCTGGGCTATGTTTAT	0.512													46	127					0	0	1	0	0
GPR155	151556	broad.mit.edu	37	2	175304647	175304647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:175304647C>T	uc002uit.2	-	16	2682	c.2291G>A	c.(2290-2292)CGA>CAA	p.R764Q	GPR155_uc002uiu.2_Missense_Mutation_p.R764Q|GPR155_uc002uiv.2_Missense_Mutation_p.R764Q|GPR155_uc010fqs.2_Missense_Mutation_p.R736Q	NM_001033045	NP_001028217	Q7Z3F1	GP155_HUMAN	G protein-coupled receptor 155 isoform 9	764	DEP.				intracellular signal transduction|transmembrane transport	integral to membrane				ovary(1)	1						GACAATGTTTCGGATACAGAG	0.333													28	88					0	0	1	0	0
WIPF1	7456	broad.mit.edu	37	2	175436545	175436545	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:175436545C>T	uc002uiy.2	-	6	1320	c.988G>A	c.(988-990)GAA>AAA	p.E330K	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Missense_Mutation_p.E330K|WIPF1_uc010fqt.1_Missense_Mutation_p.E330K|WIPF1_uc002ujc.1_Missense_Mutation_p.E330K|WIPF1_uc002uiz.2_Missense_Mutation_p.E330K|WIPF1_uc002ujb.1_Missense_Mutation_p.E330K|WIPF1_uc010zep.1_Missense_Mutation_p.E330K	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	330	Pro-rich.				actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						CTTGGGGTTTCGTCATTGCCG	0.677													5	58					0	0	1	0	0
ATF2	1386	broad.mit.edu	37	2	175939542	175939542	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:175939542G>A	uc002ujl.2	-	14	1575	c.1313C>T	c.(1312-1314)TCA>TTA	p.S438L	ATF2_uc010fqv.2_Missense_Mutation_p.S389L|ATF2_uc002ujv.2_Missense_Mutation_p.S185L|ATF2_uc002ujm.2_Missense_Mutation_p.S380L|ATF2_uc002ujn.2_RNA|ATF2_uc002ujo.2_Missense_Mutation_p.S77L|ATF2_uc002ujp.2_RNA|ATF2_uc002ujq.2_Missense_Mutation_p.S438L|ATF2_uc002ujr.2_RNA|ATF2_uc010fqu.2_Missense_Mutation_p.S420L|ATF2_uc002ujs.2_Missense_Mutation_p.S380L|ATF2_uc002ujt.2_RNA|ATF2_uc002uju.2_RNA|ATF2_uc002ujw.1_3'UTR|ATF2_uc002ujx.1_RNA|uc002ujk.2_5'Flank	NM_001880	NP_001871	P15336	ATF2_HUMAN	activating transcription factor 2	438					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	protein dimerization activity|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(1)|breast(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.125)			AATGTCTTCTGAACTATCATC	0.418													17	52					0	0	1	0	0
EVX2	344191	broad.mit.edu	37	2	176946947	176946947	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:176946947C>T	uc010zeu.1	-	2	844	c.658G>A	c.(658-660)GAG>AAG	p.E220K		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	220	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		GCGGCCAGCTCGCACCGGCGG	0.632													8	25					0	0	1	0	0
EVX2	344191	broad.mit.edu	37	2	176946975	176946975	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:176946975C>T	uc010zeu.1	-	2	816	c.630G>A	c.(628-630)GAG>GAA	p.E210E		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	210	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		ACACATAGTTCTCCCGGTAGA	0.662													9	19					0	0	1	0	0
EVX2	344191	broad.mit.edu	37	2	176947013	176947013	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:176947013C>T	uc010zeu.1	-	2	778	c.592G>A	c.(592-594)GAG>AAG	p.E198K		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	198	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		GCGATCTGCTCGCGGGTGAAC	0.711													4	19					0	0	1	0	0
EVX2	344191	broad.mit.edu	37	2	176948363	176948363	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:176948363G>A	uc010zeu.1	-	1	328	c.142C>T	c.(142-144)CGC>TGC	p.R48C		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	48						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		GGGCTTAGGCGAGCCGGGTGC	0.607													12	53					0	0	1	0	0
HOXD10	3236	broad.mit.edu	37	2	176982006	176982006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:176982006C>T	uc002ukj.2	+	1	515	c.445C>T	c.(445-447)CCT>TCT	p.P149S		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	149						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		GGTTCCCGTCCCTGGATATTT	0.537													62	167					0	0	1	0	0
HOXD10	3236	broad.mit.edu	37	2	176982108	176982108	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:176982108C>T	uc002ukj.2	+	1	617	c.547C>T	c.(547-549)CGT>TGT	p.R183C		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	183						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		GCTCAACCCTCGTGGCGCGGC	0.582													27	86					0	0	1	0	0
HOXD9	3235	broad.mit.edu	37	2	176988257	176988257	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:176988257C>T	uc010zex.1	+	1	845	c.761C>T	c.(760-762)TCG>TTG	p.S254L		NM_014213	NP_055028	P28356	HXD9_HUMAN	homeobox D9	254						nucleus	sequence-specific DNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.195)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		CCAGGCTGTTCGCTGAAGGAG	0.627													13	14					0	0	1	0	0
HOXD3	3232	broad.mit.edu	37	2	177034349	177034349	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:177034349G>A	uc002ukt.1	+	2	683	c.507G>A	c.(505-507)CAG>CAA	p.Q169Q		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	169					anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		AGTCTCGACAGAACTCCAAGC	0.567													52	111					0	0	1	0	0
HOXD3	3232	broad.mit.edu	37	2	177036456	177036456	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:177036456G>A	uc002ukt.1	+	3	929	c.753G>A	c.(751-753)AAG>AAA	p.K251K		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	251	Homeobox.				anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		AGTACAAGAAGGACCAGAAGG	0.662													37	89					0	0	1	0	0
TTC30A	92104	broad.mit.edu	37	2	178482356	178482356	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:178482356G>A	uc002ulo.2	-	1	1339	c.1074C>T	c.(1072-1074)CTC>CTT	p.L358L		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	358					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			AGAAGTCATAGAGATAGGGTG	0.473													38	110					0	0	1	0	0
PDE11A	50940	broad.mit.edu	37	2	178562106	178562106	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:178562106G>A	uc002ulq.2	-	15	2617	c.2299C>T	c.(2299-2301)CTT>TTT	p.L767F	PDE11A_uc002ulp.2_Missense_Mutation_p.L323F|PDE11A_uc002ulr.2_Missense_Mutation_p.L517F|PDE11A_uc002uls.1_Missense_Mutation_p.L409F|PDE11A_uc002ult.1_Missense_Mutation_p.L517F|PDE11A_uc002ulu.1_Missense_Mutation_p.L409F	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	767	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			TGCTTCAAAAGCTGCATAAGG	0.383									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				15	90					0	0	1	0	0
PDE11A	50940	broad.mit.edu	37	2	178565851	178565851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:178565851C>T	uc002ulq.2	-	14	2560	c.2242G>A	c.(2242-2244)GAG>AAG	p.E748K	PDE11A_uc002ulp.2_Missense_Mutation_p.E304K|PDE11A_uc002ulr.2_Missense_Mutation_p.E498K|PDE11A_uc002uls.1_Missense_Mutation_p.E390K|PDE11A_uc002ult.1_Missense_Mutation_p.E498K|PDE11A_uc002ulu.1_Missense_Mutation_p.E390K	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	748	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			GCCTGTACCTCACTTTGAAGG	0.502									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				7	27					0	0	1	0	0
PDE11A	50940	broad.mit.edu	37	2	178769882	178769882	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:178769882G>A	uc002ulq.2	-	3	1422	c.1104C>T	c.(1102-1104)ATC>ATT	p.I368I	PDE11A_uc002ulr.2_Silent_p.I118I|PDE11A_uc002uls.1_Silent_p.I10I|PDE11A_uc002ult.1_Silent_p.I118I|PDE11A_uc002ulu.1_Silent_p.I10I	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	368	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			TAGATATGGCGATTCCACAAA	0.363									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				12	40					0	0	1	0	0
PDE11A	50940	broad.mit.edu	37	2	178879114	178879114	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:178879114C>T	uc002ulq.2	-	2	1304	c.986G>A	c.(985-987)CGA>CAA	p.R329Q	PDE11A_uc002ulr.2_Missense_Mutation_p.R79Q|PDE11A_uc002ult.1_Missense_Mutation_p.R79Q	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	329	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			ATCACTGCTTCGGATAGGCAT	0.373									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				26	103					0	0	1	0	0
PDE11A	50940	broad.mit.edu	37	2	178936259	178936259	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:178936259G>A	uc002ulq.2	-	1	1224	c.906C>T	c.(904-906)GCC>GCT	p.A302A	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	302	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			CTACCTGGTAGGCATCAGGAA	0.512									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				10	141					0	0	1	0	0
OSBPL6	114880	broad.mit.edu	37	2	179214050	179214050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179214050G>A	uc002ulx.2	+	12	1465	c.1087G>A	c.(1087-1089)GAC>AAC	p.D363N	OSBPL6_uc002ulw.2_Missense_Mutation_p.D332N|OSBPL6_uc002uly.2_Missense_Mutation_p.D388N|OSBPL6_uc010zfe.1_Missense_Mutation_p.D332N|OSBPL6_uc002ulz.2_Missense_Mutation_p.D363N|OSBPL6_uc002uma.2_Missense_Mutation_p.D367N	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	363					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			CCACCTCACTGACCCTCTGGA	0.438													70	171					0	0	1	0	0
OSBPL6	114880	broad.mit.edu	37	2	179255882	179255882	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179255882G>A	uc002ulx.2	+	22	2762	c.2384G>A	c.(2383-2385)GGA>GAA	p.G795E	OSBPL6_uc002uly.2_Missense_Mutation_p.G820E|OSBPL6_uc010zfe.1_Missense_Mutation_p.G764E|OSBPL6_uc002ulz.2_Missense_Mutation_p.G759E|OSBPL6_uc002uma.2_Missense_Mutation_p.G799E	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	795					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			CGGCTGTTTGGAAAGTGGCAT	0.527													41	117					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179393620	179393620	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179393620C>T	uc010zfg.1	-	309	99378	c.99154G>A	c.(99154-99156)GAA>AAA	p.E33052K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E26747K|TTN_uc010zfi.1_Missense_Mutation_p.E26680K|TTN_uc010zfj.1_Missense_Mutation_p.E26555K|TTN_uc002umq.2_Missense_Mutation_p.E69K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33979							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTGACCTTCGTTTATGCTC	0.418													22	47					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179395723	179395723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179395723C>T	uc010zfg.1	-	307	98139	c.97915G>A	c.(97915-97917)GAA>AAA	p.E32639K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E26334K|TTN_uc010zfi.1_Missense_Mutation_p.E26267K|TTN_uc010zfj.1_Missense_Mutation_p.E26142K|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33566							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTTCCCTTCACTGTTTTCT	0.488													131	291					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179399221	179399221	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179399221C>T	uc010zfg.1	-	307	94641	c.94417G>A	c.(94417-94419)GAG>AAG	p.E31473K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25168K|TTN_uc010zfi.1_Missense_Mutation_p.E25101K|TTN_uc010zfj.1_Missense_Mutation_p.E24976K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32400							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGCTAATCTCTTTGAATGCT	0.428													36	79					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179407830	179407830	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179407830C>T	uc010zfg.1	-	296	89390	c.89166G>A	c.(89164-89166)GAG>GAA	p.E29722E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.E23417E|TTN_uc010zfi.1_Silent_p.E23350E|TTN_uc010zfj.1_Silent_p.E23225E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30649							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTGACAGTCTCTCTTGGTT	0.368													95	207					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179408964	179408964	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179408964C>T	uc010zfg.1	-	294	88512	c.88288G>A	c.(88288-88290)GAA>AAA	p.E29430K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E23125K|TTN_uc010zfi.1_Missense_Mutation_p.E23058K|TTN_uc010zfj.1_Missense_Mutation_p.E22933K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30357							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAATTGATTCGCTGTATTCG	0.383													21	52					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179408973	179408973	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179408973C>T	uc010zfg.1	-	294	88503	c.88279G>A	c.(88279-88281)GAA>AAA	p.E29427K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E23122K|TTN_uc010zfi.1_Missense_Mutation_p.E23055K|TTN_uc010zfj.1_Missense_Mutation_p.E22930K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30354							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCGCTGTATTCGCTCATACCC	0.408													27	52					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179413153	179413153	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179413153C>T	uc010zfg.1	-	288	85720	c.85496G>A	c.(85495-85497)AGT>AAT	p.S28499N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S22194N|TTN_uc010zfi.1_Missense_Mutation_p.S22127N|TTN_uc010zfj.1_Missense_Mutation_p.S22002N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29426							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCATTTTTCACTGATAACCTG	0.483													56	215					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179414035	179414035	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179414035C>T	uc010zfg.1	-	288	84838	c.84614G>A	c.(84613-84615)CGA>CAA	p.R28205Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R21900Q|TTN_uc010zfi.1_Missense_Mutation_p.R21833Q|TTN_uc010zfj.1_Missense_Mutation_p.R21708Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29132							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGAGATTGGTCGTTTGCTGAT	0.428													30	84					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179414324	179414324	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179414324C>T	uc010zfg.1	-	287	84645	c.84421G>A	c.(84421-84423)GAT>AAT	p.D28141N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D21836N|TTN_uc010zfi.1_Missense_Mutation_p.D21769N|TTN_uc010zfj.1_Missense_Mutation_p.D21644N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29068							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCACTGGATCAGAATCAAGT	0.373													25	99					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179417421	179417421	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179417421C>T	uc010zfg.1	-	284	82726	c.82502G>A	c.(82501-82503)AGG>AAG	p.R27501K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R21196K|TTN_uc010zfi.1_Missense_Mutation_p.R21129K|TTN_uc010zfj.1_Missense_Mutation_p.R21004K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28428							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTACCTTTCCTTTCTACAAC	0.448													24	83					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179418650	179418650	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179418650C>T	uc010zfg.1	-	282	81708	c.81484G>A	c.(81484-81486)GAT>AAT	p.D27162N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D20857N|TTN_uc010zfi.1_Missense_Mutation_p.D20790N|TTN_uc010zfj.1_Missense_Mutation_p.D20665N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28089							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAATAGGATCAGCAGCTTTG	0.393													11	35					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179428916	179428916	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179428916C>T	uc010zfg.1	-	275	74463	c.74239G>A	c.(74239-74241)GAA>AAA	p.E24747K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E18442K|TTN_uc010zfi.1_Missense_Mutation_p.E18375K|TTN_uc010zfj.1_Missense_Mutation_p.E18250K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25674							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.T24747N(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTCAAGTTCTTTTCCATCT	0.378													60	177					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179429682	179429682	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179429682C>T	uc010zfg.1	-	275	73697	c.73473G>A	c.(73471-73473)CTG>CTA	p.L24491L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L18186L|TTN_uc010zfi.1_Silent_p.L18119L|TTN_uc010zfj.1_Silent_p.L17994L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25418							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTTAGAATCCAGTGGGGCAC	0.383													40	129					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179430142	179430142	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179430142C>T	uc010zfg.1	-	275	73237	c.73013G>A	c.(73012-73014)CGA>CAA	p.R24338Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R18033Q|TTN_uc010zfi.1_Missense_Mutation_p.R17966Q|TTN_uc010zfj.1_Missense_Mutation_p.R17841Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25265							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGTCTTGGTCGGCCTATAAC	0.383													27	80					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179431928	179431928	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179431928G>A	uc010zfg.1	-	275	71451	c.71227C>T	c.(71227-71229)CCA>TCA	p.P23743S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P17438S|TTN_uc010zfi.1_Missense_Mutation_p.P17371S|TTN_uc010zfj.1_Missense_Mutation_p.P17246S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24670							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTGAAGTGGTGGAGACCAT	0.448													47	158					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179432393	179432393	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179432393C>T	uc010zfg.1	-	275	70986	c.70762G>A	c.(70762-70764)GAT>AAT	p.D23588N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D17283N|TTN_uc010zfi.1_Missense_Mutation_p.D17216N|TTN_uc010zfj.1_Missense_Mutation_p.D17091N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24515							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATCTTTGATCTTCAGTAAGA	0.398													20	50					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179436900	179436900	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179436900C>T	uc010zfg.1	-	275	66479	c.66255G>A	c.(66253-66255)GTG>GTA	p.V22085V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V15780V|TTN_uc010zfi.1_Silent_p.V15713V|TTN_uc010zfj.1_Silent_p.V15588V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23012							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGCATCTCCACAATGTAGC	0.458													14	21					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179438476	179438476	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179438476C>T	uc010zfg.1	-	275	64903	c.64679G>A	c.(64678-64680)GGA>GAA	p.G21560E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G15255E|TTN_uc010zfi.1_Missense_Mutation_p.G15188E|TTN_uc010zfj.1_Missense_Mutation_p.G15063E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22487							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCCAAAGGTCCTTCAGGTGG	0.448													29	94					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179438751	179438751	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179438751C>T	uc010zfg.1	-	275	64628	c.64404G>A	c.(64402-64404)AAG>AAA	p.K21468K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K15163K|TTN_uc010zfi.1_Silent_p.K15096K|TTN_uc010zfj.1_Silent_p.K14971K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22395							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAACCGTGTCCTTAAATTTAA	0.463													19	29					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179438833	179438833	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179438833C>T	uc010zfg.1	-	275	64546	c.64322G>A	c.(64321-64323)AGT>AAT	p.S21441N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S15136N|TTN_uc010zfi.1_Missense_Mutation_p.S15069N|TTN_uc010zfj.1_Missense_Mutation_p.S14944N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22368							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGATGGTGGACTGATGGCACC	0.418													31	61					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179441006	179441006	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179441006C>T	uc010zfg.1	-	275	62373	c.62149G>A	c.(62149-62151)GAG>AAG	p.E20717K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E14412K|TTN_uc010zfi.1_Missense_Mutation_p.E14345K|TTN_uc010zfj.1_Missense_Mutation_p.E14220K|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21644							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCCAGGCCTCGTCTCCTACT	0.443													25	42					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179441363	179441363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179441363C>T	uc010zfg.1	-	274	62128	c.61904G>A	c.(61903-61905)GGA>GAA	p.G20635E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G14330E|TTN_uc010zfi.1_Missense_Mutation_p.G14263E|TTN_uc010zfj.1_Missense_Mutation_p.G14138E|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21562							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTTGCAGTCCTGTTACTTT	0.443													87	217					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179443794	179443794	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179443794C>T	uc010zfg.1	-	269	60483	c.60259G>A	c.(60259-60261)GAA>AAA	p.E20087K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E13782K|TTN_uc010zfi.1_Missense_Mutation_p.E13715K|TTN_uc010zfj.1_Missense_Mutation_p.E13590K|uc002umv.1_Missense_Mutation_p.S7L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21014							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTGTGACTTCATCAAATTTG	0.453													25	36					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179447116	179447116	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179447116C>T	uc010zfg.1	-	263	58587	c.58363G>A	c.(58363-58365)GGC>AGC	p.G19455S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G13150S|TTN_uc010zfi.1_Missense_Mutation_p.G13083S|TTN_uc010zfj.1_Missense_Mutation_p.G12958S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20382							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACTCATGGCCCTCTATAAGT	0.453													19	44					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179449180	179449180	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179449180C>T	uc010zfg.1	-	260	57618	c.57394G>A	c.(57394-57396)GAA>AAA	p.E19132K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E12827K|TTN_uc010zfi.1_Missense_Mutation_p.E12760K|TTN_uc010zfj.1_Missense_Mutation_p.E12635K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20059							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTTTCTTTCCTTGCGTTCA	0.443													28	65					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179449278	179449278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179449278C>T	uc010zfg.1	-	260	57520	c.57296G>A	c.(57295-57297)CGA>CAA	p.R19099Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R12794Q|TTN_uc010zfi.1_Missense_Mutation_p.R12727Q|TTN_uc010zfj.1_Missense_Mutation_p.R12602Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20026							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGGTGACTCGTGCATTCTT	0.398													27	48					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179452434	179452434	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179452434C>T	uc010zfg.1	-	255	56122	c.55898G>A	c.(55897-55899)CGA>CAA	p.R18633Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R12328Q|TTN_uc010zfi.1_Missense_Mutation_p.R12261Q|TTN_uc010zfj.1_Missense_Mutation_p.R12136Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19560							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGGGCTGGTCGTCCTCTCAC	0.478													15	33					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179452474	179452474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179452474C>T	uc010zfg.1	-	255	56082	c.55858G>A	c.(55858-55860)GCA>ACA	p.A18620T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A12315T|TTN_uc010zfi.1_Missense_Mutation_p.A12248T|TTN_uc010zfj.1_Missense_Mutation_p.A12123T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19547							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGCATCCTGCTCTCACTATG	0.443													12	36					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179453325	179453325	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179453325C>T	uc010zfg.1	-	253	55647	c.55423G>A	c.(55423-55425)GAA>AAA	p.E18475K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E12170K|TTN_uc010zfi.1_Missense_Mutation_p.E12103K|TTN_uc010zfj.1_Missense_Mutation_p.E11978K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19402							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTCCAATTTCATTTTCTGCC	0.448													98	228					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179456479	179456479	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179456479C>T	uc010zfg.1	-	252	52587	c.52363G>A	c.(52363-52365)GAC>AAC	p.D17455N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D11150N|TTN_uc010zfi.1_Missense_Mutation_p.D11083N|TTN_uc010zfj.1_Missense_Mutation_p.D10958N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18382							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAATCCAGTCCTGGGTGCCT	0.413													39	99					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179457165	179457165	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179457165G>A	uc010zfg.1	-	250	52087	c.51863C>T	c.(51862-51864)TCT>TTT	p.S17288F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S10983F|TTN_uc010zfi.1_Missense_Mutation_p.S10916F|TTN_uc010zfj.1_Missense_Mutation_p.S10791F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18215							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTGTTAAAGAATAAATTCC	0.358													47	207					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179466465	179466465	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179466465C>T	uc010zfg.1	-	235	47872	c.47648G>A	c.(47647-47649)CGA>CAA	p.R15883Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R9578Q|TTN_uc010zfi.1_Missense_Mutation_p.R9511Q|TTN_uc010zfj.1_Missense_Mutation_p.R9386Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16810							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTATGAGATCGTTTACACTC	0.363													23	80					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179469545	179469545	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179469545C>T	uc010zfg.1	-	230	46791	c.46567G>A	c.(46567-46569)GAT>AAT	p.D15523N	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D9218N|TTN_uc010zfi.1_Missense_Mutation_p.D9151N|TTN_uc010zfj.1_Missense_Mutation_p.D9026N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16450							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACCATTATCAAGAGGGGCA	0.448													26	56					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179474049	179474049	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179474049C>T	uc010zfg.1	-	222	44508	c.44284G>A	c.(44284-44286)GGA>AGA	p.G14762R	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G8457R|TTN_uc010zfi.1_Missense_Mutation_p.G8390R|TTN_uc010zfj.1_Missense_Mutation_p.G8265R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15689							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAGATTCTCCCTTTTTGCTG	0.463													10	51					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179474571	179474571	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179474571C>T	uc010zfg.1	-	221	44099	c.43875G>A	c.(43873-43875)AGG>AGA	p.R14625R	uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R8320R|TTN_uc010zfi.1_Silent_p.R8253R|TTN_uc010zfj.1_Silent_p.R8128R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15552							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTCTTCCACCTTTCTTCAC	0.468													157	416					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179475048	179475048	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179475048C>T	uc010zfg.1	-	220	43725	c.43501G>A	c.(43501-43503)GAA>AAA	p.E14501K	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E8196K|TTN_uc010zfi.1_Missense_Mutation_p.E8129K|TTN_uc010zfj.1_Missense_Mutation_p.E8004K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15428							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGGAGGTTCCCAAGTTAAC	0.398													53	114					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179476172	179476172	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179476172C>T	uc010zfg.1	-	218	43304	c.43080G>A	c.(43078-43080)GTG>GTA	p.V14360V	uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V8055V|TTN_uc010zfi.1_Silent_p.V7988V|TTN_uc010zfj.1_Silent_p.V7863V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15287							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGACTGCTCTCACTCTCAGGA	0.418													18	88					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179486330	179486330	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179486330C>T	uc010zfg.1	-	194	37741	c.37517G>A	c.(37516-37518)GGA>GAA	p.G12506E	TTN_uc010zfh.1_Missense_Mutation_p.G6201E|TTN_uc010zfi.1_Missense_Mutation_p.G6134E|TTN_uc010zfj.1_Missense_Mutation_p.G6009E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13433							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCATATCTTCCTGTTTCAAT	0.443													33	72					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179486595	179486595	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179486595C>T	uc010zfg.1	-	193	37574	c.37350G>A	c.(37348-37350)GCG>GCA	p.A12450A	TTN_uc010zfh.1_Silent_p.A6145A|TTN_uc010zfi.1_Silent_p.A6078A|TTN_uc010zfj.1_Silent_p.A5953A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13377							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGAAGTTCTCGCTGTCCTTA	0.378													19	35					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179489358	179489358	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179489358C>T	uc010zfg.1	-	191	37169	c.36945G>A	c.(36943-36945)GTG>GTA	p.V12315V	TTN_uc010zfh.1_Silent_p.V6010V|TTN_uc010zfi.1_Silent_p.V5943V|TTN_uc010zfj.1_Silent_p.V5818V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13242							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAACCATTTCACCTTAGCAT	0.458													24	58					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179497087	179497087	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179497087C>T	uc010zfg.1	-	185	36054	c.35830G>A	c.(35830-35832)GAA>AAA	p.E11944K	TTN_uc010zfh.1_Missense_Mutation_p.E5639K|TTN_uc010zfi.1_Missense_Mutation_p.E5572K|TTN_uc010zfj.1_Missense_Mutation_p.E5447K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12871							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAGCACTTTCCTTCTCTTTG	0.403													9	12					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179497405	179497405	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179497405C>T	uc010zfg.1	-	184	35848	c.35624G>A	c.(35623-35625)GGA>GAA	p.G11875E	TTN_uc010zfh.1_Missense_Mutation_p.G5570E|TTN_uc010zfi.1_Missense_Mutation_p.G5503E|TTN_uc010zfj.1_Missense_Mutation_p.G5378E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12802							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCTGGGTTCCTTTTAGCCA	0.418													55	144					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179497989	179497989	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179497989G>A	uc010zfg.1	-	182	35531	c.35307C>T	c.(35305-35307)CAC>CAT	p.H11769H	TTN_uc010zfh.1_Silent_p.H5464H|TTN_uc010zfi.1_Silent_p.H5397H|TTN_uc010zfj.1_Silent_p.H5272H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12696							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAATTTCAAAGTGGGCTGTTT	0.413													49	79					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179498290	179498290	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179498290C>T	uc010zfg.1	-	181	35316	c.35092G>A	c.(35092-35094)GGT>AGT	p.G11698S	TTN_uc010zfh.1_Missense_Mutation_p.G5393S|TTN_uc010zfi.1_Missense_Mutation_p.G5326S|TTN_uc010zfj.1_Missense_Mutation_p.G5201S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12625							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTCTTCACCATCTTTGAAC	0.408													20	45					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179499268	179499268	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179499268C>T	uc010zfg.1	-	179	34760	c.34536G>A	c.(34534-34536)GAG>GAA	p.E11512E	TTN_uc010zfh.1_Silent_p.E5207E|TTN_uc010zfi.1_Silent_p.E5140E|TTN_uc010zfj.1_Silent_p.E5015E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12439							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAACATTTGCCTCTCGGGTGA	0.398													50	131					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179501469	179501469	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179501469C>T	uc010zfg.1	-	174	33505	c.33281G>A	c.(33280-33282)GGA>GAA	p.G11094E	TTN_uc010zfh.1_Missense_Mutation_p.G4789E|TTN_uc010zfi.1_Missense_Mutation_p.G4722E|TTN_uc010zfj.1_Missense_Mutation_p.G4597E|TTN_uc010fre.1_Missense_Mutation_p.G955E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12021							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCACCACTTCCTGGCCTTAA	0.423													24	57					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179501491	179501491	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179501491C>T	uc010zfg.1	-	174	33483	c.33259G>A	c.(33259-33261)GAA>AAA	p.E11087K	TTN_uc010zfh.1_Missense_Mutation_p.E4782K|TTN_uc010zfi.1_Missense_Mutation_p.E4715K|TTN_uc010zfj.1_Missense_Mutation_p.E4590K|TTN_uc010fre.1_Missense_Mutation_p.E948K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12014							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCTCCTTTCGGCTTCTATT	0.433													17	54					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179505290	179505290	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179505290C>T	uc010zfg.1	-	170	33221	c.32997G>A	c.(32995-32997)AGG>AGA	p.R10999R	TTN_uc010zfh.1_Silent_p.R4694R|TTN_uc010zfi.1_Silent_p.R4627R|TTN_uc010zfj.1_Silent_p.R4502R|TTN_uc010fre.1_Silent_p.R877R|TTN_uc002umw.1_RNA|TTN_uc002umx.1_Silent_p.R214R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11926							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGAATCTTCCTTTCCCTTT	0.323													26	126					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179516823	179516823	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179516823C>T	uc010zfg.1	-	158	32217	c.31993G>A	c.(31993-31995)GTG>ATG	p.V10665M	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_5'Flank|TTN_uc002umx.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11592							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCATTATTACCTTCAGGGGGA	0.353													34	87					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179528772	179528772	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179528772G>A	uc010zfk.1	-	14	1320	c.772C>T	c.(772-774)CCT>TCT	p.P258S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11470							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R256_K260>K(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCTTTTTAGGAGGCACCACC	0.388													45	96					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179529435	179529435	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179529435C>T	uc010zfk.1	-	12	1134	c.586G>A	c.(586-588)GAA>AAA	p.E196K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11406							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTTCTTTTCAGGGACAATT	0.383													12	46					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179535872	179535872	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179535872G>A	uc010zfg.1	-	151	31574	c.31350C>T	c.(31348-31350)ATC>ATT	p.I10450I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I7111I|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11377							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTTGGAGGGATGATTTTCT	0.353													14	37					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179539769	179539769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179539769C>T	uc010zfg.1	-	145	30930	c.30706G>A	c.(30706-30708)GAA>AAA	p.E10236K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6897K|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'Flank|TTN_uc002una.1_RNA|TTN_uc010frf.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11163							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATCTACCTTCAACTGGTAGA	0.333													12	27					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179542591	179542591	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179542591C>T	uc010zfg.1	-	143	30540	c.30316G>A	c.(30316-30318)GAA>AAA	p.E10106K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6767K|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11033							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATAGAACTTCCTCTTCCTGA	0.393													49	88					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179552902	179552902	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179552902G>A	uc010zfg.1	-	124	28739	c.28515C>T	c.(28513-28515)TCC>TCT	p.S9505S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S6166S|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10432							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAACTGAAATGGACACACCTT	0.393													54	139					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179553422	179553422	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179553422C>T	uc010zfg.1	-	123	28671	c.28447G>A	c.(28447-28449)GAA>AAA	p.E9483K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6144K|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10410							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGCGTGACTTCCACTCTTTGA	0.388													34	53					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179554594	179554594	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179554594C>T	uc010zfg.1	-	119	28284	c.28060G>A	c.(28060-28062)GAA>AAA	p.E9354K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6015K|TTN_uc010fre.1_Missense_Mutation_p.E465K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10281							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTTTTCTTCAGGGACAGGT	0.403													75	218					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179567368	179567368	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179567368C>T	uc010zfg.1	-	104	26738	c.26514G>A	c.(26512-26514)AAG>AAA	p.K8838K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.K5499K|TTN_uc010fre.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9765							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGTATGCGCTTTGTAAACT	0.393													16	51					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179569269	179569269	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179569269G>A	uc010zfg.1	-	102	26422	c.26198C>T	c.(26197-26199)CCA>CTA	p.P8733L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P5394L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9660							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCGATGTGTGGACCACAAAC	0.373													12	37					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179569441	179569441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179569441C>T	uc010zfg.1	-	102	26250	c.26026G>A	c.(26026-26028)GAA>AAA	p.E8676K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5337K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9603							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTCAATTTCAAAGACAGCA	0.328													10	15					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179569663	179569663	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179569663C>T	uc010zfg.1	-	101	26127	c.25903G>A	c.(25903-25905)GAC>AAC	p.D8635N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D5296N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9562							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTTTCGTCCCTCTCTGAC	0.323													44	139					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179569978	179569978	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179569978C>T	uc010zfg.1	-	100	26019	c.25795G>A	c.(25795-25797)GGA>AGA	p.G8599R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G5260R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9526							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGTGATTCCATACATGCGG	0.378													18	60					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179571363	179571363	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179571363G>A	uc010zfg.1	-	99	25730	c.25506C>T	c.(25504-25506)TTC>TTT	p.F8502F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F5163F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9429							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGGTGGATGAAAACACGAC	0.453													36	185					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179571376	179571376	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179571376C>T	uc010zfg.1	-	99	25717	c.25493G>A	c.(25492-25494)GGA>GAA	p.G8498E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G5159E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9425							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACACGACCTCCTTGGTTCAG	0.443													64	131					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179575439	179575439	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179575439C>T	uc010zfg.1	-	95	24877	c.24653G>A	c.(24652-24654)GGA>GAA	p.G8218E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4879E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9145							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCAGAATCTCCTTTGTCTAC	0.438													57	78					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179575520	179575520	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179575520C>T	uc010zfg.1	-	95	24796	c.24572G>A	c.(24571-24573)AGA>AAA	p.R8191K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R4852K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9118							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCGTATTTCTCTGCTGTCTTT	0.507													20	70					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179575593	179575593	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179575593C>T	uc010zfg.1	-	95	24723	c.24499G>A	c.(24499-24501)GGA>AGA	p.G8167R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4828R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9094							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACTTTCTCCCACCACAGCA	0.512													16	63					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179575645	179575645	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179575645C>T	uc010zfg.1	-	95	24671	c.24447G>A	c.(24445-24447)GGG>GGA	p.G8149G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G4810G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9076							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGGTTCTTCCCCTCTAATA	0.453													24	58					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179576907	179576907	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179576907G>A	uc010zfg.1	-	93	24142	c.23918C>T	c.(23917-23919)TCT>TTT	p.S7973F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S4634F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8900							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTCCAACAGACACCTTAAC	0.463													24	54					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179577424	179577424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179577424C>T	uc010zfg.1	-	91	23820	c.23596G>A	c.(23596-23598)GCC>ACC	p.A7866T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.A4527T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8793							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGACAAACCTTTTATGTAG	0.338													32	82					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179579281	179579281	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179579281C>T	uc010zfg.1	-	88	22712	c.22488G>A	c.(22486-22488)AAG>AAA	p.K7496K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.K4157K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8423							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTGAGCTTCTTCACAAATC	0.438													11	29					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179579835	179579835	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179579835G>A	uc010zfg.1	-	87	22570	c.22346C>T	c.(22345-22347)TCT>TTT	p.S7449F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S4110F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8376							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAGTTCTCAGACATTATCTT	0.453													88	239					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179580269	179580269	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179580269G>A	uc010zfg.1	-	86	22364	c.22140C>T	c.(22138-22140)GCC>GCT	p.A7380A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.A4041A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8307							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCATTGTGGGCCTCACAGG	0.478													5	78					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179582436	179582436	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179582436G>A	uc010zfg.1	-	84	21657	c.21433C>T	c.(21433-21435)CTT>TTT	p.L7145F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L3806F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8072							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACACTTGAAGAGGTTCTGAG	0.408													4	27					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179582503	179582503	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179582503C>T	uc010zfg.1	-	84	21590	c.21366G>A	c.(21364-21366)CTG>CTA	p.L7122L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L3783L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8049							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAACGTCTTTCAGTTTTCTTG	0.418													7	26					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179583227	179583227	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179583227C>T	uc010zfg.1	-	82	21098	c.20874G>A	c.(20872-20874)GTG>GTA	p.V6958V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V3619V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7885							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTATCCAGCTCACTGAGATTG	0.428													8	58					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179584010	179584010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179584010G>A	uc010zfg.1	-	80	20599	c.20375C>T	c.(20374-20376)TCG>TTG	p.S6792L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S3453L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7719							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACGTTTTCCGAAAAGCTGGA	0.507													28	139					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179584053	179584053	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179584053C>T	uc010zfg.1	-	80	20556	c.20332G>A	c.(20332-20334)GGA>AGA	p.G6778R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G3439R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7705							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTCATTTCCATCCTGAAAC	0.512													61	123					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179584156	179584156	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179584156G>A	uc010zfg.1	-	80	20453	c.20229C>T	c.(20227-20229)TTC>TTT	p.F6743F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F3404F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7670							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTGCGGATGAAGGAAGGAG	0.502													24	85					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179584835	179584835	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179584835G>A	uc010zfg.1	-	78	20026	c.19802C>T	c.(19801-19803)TCA>TTA	p.S6601L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S3262L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7528							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCAATGAATGAAATCCTGGT	0.428													10	86					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179585180	179585180	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179585180C>T	uc010zfg.1	-	77	19801	c.19577G>A	c.(19576-19578)GGG>GAG	p.G6526E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G3187E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7453							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGATATTCCCCGACATCGGA	0.378													38	105					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179585738	179585738	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179585738C>T	uc010zfg.1	-	76	19500	c.19276G>A	c.(19276-19278)GAA>AAA	p.E6426K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E3087K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7353							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACTAGCTTCATTGATCGTA	0.433													32	78					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179585815	179585815	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179585815C>T	uc010zfg.1	-	76	19423	c.19199G>A	c.(19198-19200)CGA>CAA	p.R6400Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R3061Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7327							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTGTCATTTCGGAACCATGA	0.393													22	92					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179585896	179585896	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179585896G>A	uc010zfg.1	-	76	19342	c.19118C>T	c.(19117-19119)TCA>TTA	p.S6373L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S3034L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7300							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCAACTTTTGAAGCTTCTAA	0.348													15	35					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179587530	179587530	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179587530T>C	uc010zfg.1	-	73	18588	c.18364A>G	c.(18364-18366)ACT>GCT	p.T6122A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.T2783A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7049							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTCAGGAGTTGGCCGTAAT	0.418													10	30					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179588821	179588821	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179588821C>T	uc010zfg.1	-	70	17657	c.17433G>A	c.(17431-17433)GGG>GGA	p.G5811G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G2472G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6738							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACCTAACACCCCACCAGTAT	0.433													7	30					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179590249	179590249	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179590249C>T	uc010zfg.1	-	68	17174	c.16950G>A	c.(16948-16950)GTG>GTA	p.V5650V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V2311V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6577							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCTCTAATCACTTCTTCCT	0.438													24	59					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179590257	179590257	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179590257C>T	uc010zfg.1	-	68	17166	c.16942G>A	c.(16942-16944)GAA>AAA	p.E5648K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E2309K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6575							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCACTTCTTCCTTCTCTTTA	0.433													18	62					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179591878	179591878	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179591878G>A	uc010zfg.1	-	66	16706	c.16482C>T	c.(16480-16482)TTC>TTT	p.F5494F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F2155F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6421							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCACAAATGAAATCTCCAC	0.418													27	99					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179592510	179592510	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179592510C>T	uc010zfg.1	-	65	16287	c.16063G>A	c.(16063-16065)GGA>AGA	p.G5355R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G2016R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6282							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTGGTGTTCCTTTTAGTATT	0.393													48	112					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179593660	179593660	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179593660C>T	uc010zfg.1	-	62	15597	c.15373G>A	c.(15373-15375)GAG>AAG	p.E5125K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1786K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6052							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTCCTGACTCATTCTTGGCT	0.388													13	21					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179593736	179593736	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179593736C>T	uc010zfg.1	-	62	15521	c.15297G>A	c.(15295-15297)GTG>GTA	p.V5099V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V1760V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6026							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACACTGTCCACAAATGAAA	0.423													5	25					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179593759	179593759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179593759C>T	uc010zfg.1	-	62	15498	c.15274G>A	c.(15274-15276)GAT>AAT	p.D5092N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1753N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6019							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGACATTATCATCTTCATCA	0.408													6	21					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594181	179594181	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179594181C>T	uc010zfg.1	-	61	15194	c.14970G>A	c.(14968-14970)AAG>AAA	p.K4990K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.K1651K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5917							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCCTGTTATTCTTCAGCCAAG	0.453													50	85					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594212	179594212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179594212C>T	uc010zfg.1	-	61	15163	c.14939G>A	c.(14938-14940)GGA>GAA	p.G4980E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G1641E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5907							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGGAGGTGTTCCCGTAACTTC	0.443													27	104					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594268	179594268	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179594268C>T	uc010zfg.1	-	61	15107	c.14883G>A	c.(14881-14883)CTG>CTA	p.L4961L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L1622L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5888							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACAGGCTTCAGCTCTCTGA	0.463													15	98					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594547	179594547	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179594547C>T	uc010zfg.1	-	60	14925	c.14701G>A	c.(14701-14703)GAA>AAA	p.E4901K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1562K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5828							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTGTTATTTCATTCCCGTCT	0.428													35	53					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594659	179594659	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179594659G>A	uc010zfg.1	-	60	14813	c.14589C>T	c.(14587-14589)TTC>TTT	p.F4863F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F1524F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5790							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTCTTAATGAATTGAGGAG	0.428													10	25					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594905	179594905	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179594905G>A	uc010zfg.1	-	59	14714	c.14490C>T	c.(14488-14490)GCC>GCT	p.A4830A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.A1491A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5757							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGGTAGCTTTGGCTGCAAAGA	0.448													5	41					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594940	179594940	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179594940C>T	uc010zfg.1	-	59	14679	c.14455G>A	c.(14455-14457)GAT>AAT	p.D4819N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1480N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5746							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGGTGTCATCCTTCCAAACT	0.468													18	25					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179595094	179595095	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179595094_179595095GG>AA	uc010zfg.1	-	59	14524_14525	c.14300_14301CC>TT	c.(14299-14301)CCC>CTT	p.P4767L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P1428L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5694							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAAAGTAAGGGGGTTCTGAGGT	0.351													6	16					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179595335	179595335	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179595335G>A	uc010zfg.1	-	58	14417	c.14193C>T	c.(14191-14193)TTC>TTT	p.F4731F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F1392F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5658							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGATTTCCAAGAAGGCAGTAT	0.453													24	114					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179596633	179596633	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179596633G>A	uc010zfg.1	-	55	13461	c.13237C>T	c.(13237-13239)CTG>TTG	p.L4413L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L1074L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5340							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCTCAGCCAGCAACATGACA	0.403													28	103					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179596678	179596678	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179596678C>T	uc010zfg.1	-	55	13416	c.13192G>A	c.(13192-13194)GAA>AAA	p.E4398K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1059K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5325							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCTTAAATTCCTTGGTAAAA	0.443													10	74					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179596949	179596949	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179596949C>T	uc010zfg.1	-	54	13239	c.13015G>A	c.(13015-13017)GAA>AAA	p.E4339K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1000K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5266							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTAATTTCTCTATCATTT	0.428													48	154					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179599149	179599149	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179599149G>A	uc010zfg.1	-	49	11894	c.11670C>T	c.(11668-11670)ATC>ATT	p.I3890I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I551I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4817							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAAACGAAAAGATCTCCAGAC	0.383													52	162					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179599285	179599285	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179599285C>T	uc010zfg.1	-	49	11758	c.11534G>A	c.(11533-11535)GGA>GAA	p.G3845E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G506E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4772							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCATTTGTTCCTCTCACTAT	0.363													30	134					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179599310	179599310	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179599310G>A	uc010zfg.1	-	49	11733	c.11509C>T	c.(11509-11511)CTT>TTT	p.L3837F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L498F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4764							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAGGCTCAAGAGTTTTGATG	0.368													28	150					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179599464	179599464	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179599464C>T	uc010zfg.1	-	48	11679	c.11455G>A	c.(11455-11457)GAT>AAT	p.D3819N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D480N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4746							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCAGCTATCACTGCCGACG	0.353													40	146					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179600700	179600700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179600700C>T	uc010zfg.1	-	47	10965	c.10741G>A	c.(10741-10743)GAA>AAA	p.E3581K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E242K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4508							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAAATGGTTTCTATCACAGGA	0.463													31	65					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179603955	179603955	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179603955C>T	uc010zfh.1	-	46	13716	c.13492G>A	c.(13492-13494)GAA>AAA	p.E4498K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E4431K|TTN_uc010zfj.1_Missense_Mutation_p.E4306K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGATGGTCTTCGGTATTTACT	0.378													10	28					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604061	179604061	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179604061T>A	uc010zfh.1	-	46	13610	c.13386A>T	c.(13384-13386)AAA>AAT	p.K4462N	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.K4395N|TTN_uc010zfj.1_Missense_Mutation_p.K4270N|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATTCACCTCTTTAGCATTTG	0.368													14	35					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604076	179604077	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179604076_179604077GG>AA	uc010zfh.1	-	46	13594_13595	c.13370_13371CC>TT	c.(13369-13371)TCC>TTT	p.S4457F	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.S4390F|TTN_uc010zfj.1_Missense_Mutation_p.S4265F|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATTTGTTATGGATGTTGTGAG	0.391													7	51					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604199	179604199	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179604199C>T	uc010zfh.1	-	46	13472	c.13248G>A	c.(13246-13248)GAG>GAA	p.E4416E	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.E4349E|TTN_uc010zfj.1_Silent_p.E4224E|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTAGCAACCTCCTCAGTAC	0.458													18	72					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604474	179604474	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179604474G>A	uc010zfh.1	-	46	13197	c.12973C>T	c.(12973-12975)CAG>TAG	p.Q4325*	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Nonsense_Mutation_p.Q4258*|TTN_uc010zfj.1_Nonsense_Mutation_p.Q4133*|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTCCTTGCTGAATTCTAGGA	0.383													86	191					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604650	179604650	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179604650C>T	uc010zfh.1	-	46	13021	c.12797G>A	c.(12796-12798)AGA>AAA	p.R4266K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.R4199K|TTN_uc010zfj.1_Missense_Mutation_p.R4074K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATGATGTGTCTGGGCTCTTG	0.458													33	112					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604980	179604980	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179604980G>A	uc010zfh.1	-	46	12691	c.12467C>T	c.(12466-12468)TCC>TTC	p.S4156F	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.S4089F|TTN_uc010zfj.1_Missense_Mutation_p.S3964F|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAATCTTAAGGACTTGCCTTC	0.433													36	88					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179605338	179605338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179605338C>T	uc010zfh.1	-	46	12333	c.12109G>A	c.(12109-12111)GAA>AAA	p.E4037K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E3970K|TTN_uc010zfj.1_Missense_Mutation_p.E3845K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTTCAGGTTCAGCTAATAAA	0.388													30	76					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179605677	179605677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179605677C>T	uc010zfh.1	-	46	11994	c.11770G>A	c.(11770-11772)GAG>AAG	p.E3924K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E3857K|TTN_uc010zfj.1_Missense_Mutation_p.E3732K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3856							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAATATGCTCATAAGATAGT	0.408													35	76					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179611058	179611058	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179611058G>A	uc002unb.2	-	46	16293	c.16069C>T	c.(16069-16071)CCA>TCA	p.P5357S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCATATTTGGATCTACAAAA	0.333													26	49					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179611474	179611474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179611474C>T	uc002unb.2	-	46	15877	c.15653G>A	c.(15652-15654)CGA>CAA	p.R5218Q	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R5218C(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGATTTATTTCGATACCATTT	0.373													42	103					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179611552	179611552	+	Missense_Mutation	SNP	C	T	T	rs62179016	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179611552C>T	uc002unb.2	-	46	15799	c.15575G>A	c.(15574-15576)AGG>AAG	p.R5192K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATACCTTCCTTTTGGTCAG	0.388													52	100					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179611619	179611619	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179611619G>A	uc002unb.2	-	46	15732	c.15508C>T	c.(15508-15510)CCC>TCC	p.P5170S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTCATTGGGTGTACCAAAT	0.408													55	111					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179612645	179612645	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179612645G>A	uc002unb.2	-	46	14706	c.14482C>T	c.(14482-14484)CTG>TTG	p.L4828L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTGACTCAGGGAGAGCTGT	0.448													21	51					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179613628	179613628	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179613628C>T	uc002unb.2	-	46	13723	c.13499G>A	c.(13498-13500)AGA>AAA	p.R4500K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	630							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTGATTCTCTTTGCTTTAA	0.318													37	52					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179613737	179613737	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179613737C>T	uc002unb.2	-	46	13614	c.13390G>A	c.(13390-13392)GAA>AAA	p.E4464K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTAATTTTTCAAATTCGATA	0.338													22	69					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179613867	179613867	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179613867T>A	uc002unb.2	-	46	13484	c.13260A>T	c.(13258-13260)CCA>CCT	p.P4420P	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTGAATATTTGGTAAATAGT	0.343													23	62					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179614236	179614236	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179614236C>T	uc002unb.2	-	46	13115	c.12891G>A	c.(12889-12891)TGG>TGA	p.W4297*	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTACATTTGTCCAGGGAGTAA	0.398													23	50					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179614317	179614317	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179614317G>A	uc002unb.2	-	46	13034	c.12810C>T	c.(12808-12810)TCC>TCT	p.S4270S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTGATCTCTGGAATATTTTC	0.383													32	62					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179615651	179615651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179615651C>T	uc002unb.2	-	46	11700	c.11476G>A	c.(11476-11478)GAA>AAA	p.E3826K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTAGAATTTCACCATATAAA	0.348													53	137					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179615810	179615810	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179615810G>A	uc002unb.2	-	46	11541	c.11317C>T	c.(11317-11319)CCA>TCA	p.P3773S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGGCATGTGGATTTTGCACA	0.348													12	184					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179616242	179616242	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179616242C>T	uc002unb.2	-	46	11109	c.10885G>A	c.(10885-10887)GAT>AAT	p.D3629N	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTATCCTATCTTCTCCCCTT	0.368													91	173					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179621171	179621171	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179621171G>A	uc010zfh.1	-	44	10743	c.10519C>T	c.(10519-10521)CAA>TAA	p.Q3507*	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGAGGAATTGAGCCGTGTCA	0.448													13	38					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179621303	179621303	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179621303G>A	uc010zfh.1	-	44	10611	c.10387C>T	c.(10387-10389)CAT>TAT	p.H3463Y	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGCAGTATGGCACAACTGT	0.423													9	61					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179621389	179621389	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179621389G>A	uc010zfh.1	-	44	10525	c.10301C>T	c.(10300-10302)TCA>TTA	p.S3434L	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATTCATATGATGATCCTTG	0.418													21	55					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179622401	179622401	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179622401C>T	uc010zfi.1	-	44	10632	c.10408G>A	c.(10408-10410)GAG>AAG	p.E3470K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133432	NP_597676	Q8WZ42	TITIN_HUMAN	titin isoform novex-1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGACTCCTCAAAATGGAAA	0.453													35	96					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179629027	179629027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179629027G>A	uc010zfg.1	-	43	10215	c.9991C>T	c.(9991-9993)CCA>TCA	p.P3331S	TTN_uc010zfh.1_Missense_Mutation_p.P3285S|TTN_uc010zfi.1_Missense_Mutation_p.P3285S|TTN_uc010zfj.1_Missense_Mutation_p.P3285S|TTN_uc002umz.1_5'UTR|TTN_uc002unb.2_Missense_Mutation_p.P3331S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3331							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAACTTCTGGAACTAAAGAA	0.448													14	31					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179631337	179631337	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179631337G>A	uc010zfg.1	-	41	9698	c.9474C>T	c.(9472-9474)GTC>GTT	p.V3158V	TTN_uc010zfh.1_Silent_p.V3112V|TTN_uc010zfi.1_Silent_p.V3112V|TTN_uc010zfj.1_Silent_p.V3112V|TTN_uc002umz.1_5'Flank|TTN_uc002unb.2_Silent_p.V3158V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3158							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTCTCAATGACCTGTTGAT	0.368													14	43					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179632515	179632515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179632515G>A	uc010zfg.1	-	40	9666	c.9442C>T	c.(9442-9444)CGC>TGC	p.R3148C	TTN_uc010zfh.1_Missense_Mutation_p.R3102C|TTN_uc010zfi.1_Missense_Mutation_p.R3102C|TTN_uc010zfj.1_Missense_Mutation_p.R3102C|TTN_uc002unb.2_Missense_Mutation_p.R3148C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3148							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCGGATGCGAACATCTCTG	0.398													52	177					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179633472	179633472	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179633472G>A	uc010zfg.1	-	38	9315	c.9091C>T	c.(9091-9093)CAC>TAC	p.H3031Y	TTN_uc010zfh.1_Missense_Mutation_p.H2985Y|TTN_uc010zfi.1_Missense_Mutation_p.H2985Y|TTN_uc010zfj.1_Missense_Mutation_p.H2985Y|TTN_uc002unb.2_Missense_Mutation_p.H3031Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3031							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCCCAAAGTGAACATTCCTG	0.408													17	62					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179633587	179633587	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179633587C>T	uc010zfg.1	-	38	9200	c.8976G>A	c.(8974-8976)GTG>GTA	p.V2992V	TTN_uc010zfh.1_Silent_p.V2946V|TTN_uc010zfi.1_Silent_p.V2946V|TTN_uc010zfj.1_Silent_p.V2946V|TTN_uc002unb.2_Silent_p.V2992V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2992							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCATAGTTCACTGTCACCT	0.388													14	54					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179635143	179635143	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179635143C>T	uc010zfg.1	-	35	8600	c.8376G>A	c.(8374-8376)GTG>GTA	p.V2792V	TTN_uc010zfh.1_Silent_p.V2746V|TTN_uc010zfi.1_Silent_p.V2746V|TTN_uc010zfj.1_Silent_p.V2746V|TTN_uc002unb.2_Silent_p.V2792V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2792							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTACTCTCCACGTGCAGTC	0.438													23	77					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179638073	179638073	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179638073G>A	uc010zfg.1	-	33	7842	c.7618C>T	c.(7618-7620)CGT>TGT	p.R2540C	TTN_uc010zfh.1_Missense_Mutation_p.R2494C|TTN_uc010zfi.1_Missense_Mutation_p.R2494C|TTN_uc010zfj.1_Missense_Mutation_p.R2494C|TTN_uc002unb.2_Missense_Mutation_p.R2540C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2540							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAAGGTCACGAAGACCTCTG	0.353													22	68					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179638652	179638652	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179638652C>T	uc010zfg.1	-	31	7467	c.7243G>A	c.(7243-7245)GAA>AAA	p.E2415K	TTN_uc010zfh.1_Missense_Mutation_p.E2369K|TTN_uc010zfi.1_Missense_Mutation_p.E2369K|TTN_uc010zfj.1_Missense_Mutation_p.E2369K|TTN_uc002unb.2_Missense_Mutation_p.E2415K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2415							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCATGTCTTCAATGAGCAGC	0.478													34	109					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179639748	179639748	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179639748G>A	uc010zfg.1	-	29	6914	c.6690C>T	c.(6688-6690)TTC>TTT	p.F2230F	TTN_uc010zfh.1_Silent_p.F2184F|TTN_uc010zfi.1_Silent_p.F2184F|TTN_uc010zfj.1_Silent_p.F2184F|TTN_uc002unb.2_Silent_p.F2230F|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2230							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTATGGAGAGGAAGTGAACCT	0.388													23	74					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179640122	179640122	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179640122C>T	uc010zfg.1	-	28	6693	c.6469G>A	c.(6469-6471)GCT>ACT	p.A2157T	TTN_uc010zfh.1_Missense_Mutation_p.A2111T|TTN_uc010zfi.1_Missense_Mutation_p.A2111T|TTN_uc010zfj.1_Missense_Mutation_p.A2111T|TTN_uc002unb.2_Missense_Mutation_p.A2157T|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2157							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTCTCCAGCTATGTTGATG	0.433													18	73					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179640263	179640263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179640263C>T	uc010zfg.1	-	28	6552	c.6328G>A	c.(6328-6330)GAA>AAA	p.E2110K	TTN_uc010zfh.1_Missense_Mutation_p.E2064K|TTN_uc010zfi.1_Missense_Mutation_p.E2064K|TTN_uc010zfj.1_Missense_Mutation_p.E2064K|TTN_uc002unb.2_Missense_Mutation_p.E2110K|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2110							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTACCATTCACATTCGGGG	0.483													6	58					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179640348	179640348	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179640348G>A	uc010zfg.1	-	28	6467	c.6243C>T	c.(6241-6243)TTC>TTT	p.F2081F	TTN_uc010zfh.1_Silent_p.F2035F|TTN_uc010zfi.1_Silent_p.F2035F|TTN_uc010zfj.1_Silent_p.F2035F|TTN_uc002unb.2_Silent_p.F2081F|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2081							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGATTCTTTCGAAGATTTTTG	0.453													29	73					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179641355	179641355	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179641355C>T	uc010zfg.1	-	28	5460	c.5236G>A	c.(5236-5238)GAA>AAA	p.E1746K	TTN_uc010zfh.1_Missense_Mutation_p.E1700K|TTN_uc010zfi.1_Missense_Mutation_p.E1700K|TTN_uc010zfj.1_Missense_Mutation_p.E1700K|TTN_uc002unb.2_Missense_Mutation_p.E1746K|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1746							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGCTGCTTCAAGTGGCTTT	0.493													15	50					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179642167	179642167	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179642167G>A	uc010zfg.1	-	26	4849	c.4625C>T	c.(4624-4626)TCA>TTA	p.S1542L	TTN_uc010zfh.1_Missense_Mutation_p.S1496L|TTN_uc010zfi.1_Missense_Mutation_p.S1496L|TTN_uc010zfj.1_Missense_Mutation_p.S1496L|TTN_uc002unb.2_Missense_Mutation_p.S1542L|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1542							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAAAATCACTGAAATTGAAGA	0.383													8	32					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179643770	179643770	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179643770C>T	uc010zfg.1	-	24	4263	c.4039G>A	c.(4039-4041)GCT>ACT	p.A1347T	TTN_uc010zfh.1_Missense_Mutation_p.A1301T|TTN_uc010zfi.1_Missense_Mutation_p.A1301T|TTN_uc010zfj.1_Missense_Mutation_p.A1301T|TTN_uc002unb.2_Missense_Mutation_p.A1347T|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1347							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.A1301T(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGCAGACTAGCTCTGCCATCT	0.403													14	57					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179643967	179643967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179643967G>A	uc010zfg.1	-	23	4176	c.3952C>T	c.(3952-3954)CCA>TCA	p.P1318S	TTN_uc010zfh.1_Missense_Mutation_p.P1272S|TTN_uc010zfi.1_Missense_Mutation_p.P1272S|TTN_uc010zfj.1_Missense_Mutation_p.P1272S|TTN_uc002unb.2_Missense_Mutation_p.P1318S|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1318							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGGTAATGGATATCCAGAC	0.303													20	48					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179644044	179644044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179644044C>T	uc010zfg.1	-	23	4099	c.3875G>A	c.(3874-3876)GGA>GAA	p.G1292E	TTN_uc010zfh.1_Missense_Mutation_p.G1246E|TTN_uc010zfi.1_Missense_Mutation_p.G1246E|TTN_uc010zfj.1_Missense_Mutation_p.G1246E|TTN_uc002unb.2_Missense_Mutation_p.G1292E|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1292							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAATCAAATCCTGATTCAAC	0.328													12	54					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179644778	179644778	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179644778C>T	uc010zfg.1	-	22	3902	c.3678G>A	c.(3676-3678)AGG>AGA	p.R1226R	TTN_uc010zfh.1_Silent_p.R1180R|TTN_uc010zfi.1_Silent_p.R1180R|TTN_uc010zfj.1_Silent_p.R1180R|TTN_uc002unb.2_Silent_p.R1226R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1226							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATTTTCTTCCTAATTAAGG	0.299													36	64					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179648883	179648883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179648883C>T	uc010zfg.1	-	16	2913	c.2689G>A	c.(2689-2691)GAG>AAG	p.E897K	TTN_uc010zfh.1_Missense_Mutation_p.E851K|TTN_uc010zfi.1_Missense_Mutation_p.E851K|TTN_uc010zfj.1_Missense_Mutation_p.E851K|TTN_uc002unb.2_Missense_Mutation_p.E897K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	897							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTTCACCTCAACGCCAGCT	0.547													37	91					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179648970	179648970	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179648970C>T	uc010zfg.1	-	16	2826	c.2602G>A	c.(2602-2604)GAG>AAG	p.E868K	TTN_uc010zfh.1_Missense_Mutation_p.E822K|TTN_uc010zfi.1_Missense_Mutation_p.E822K|TTN_uc010zfj.1_Missense_Mutation_p.E822K|TTN_uc002unb.2_Missense_Mutation_p.E868K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	868							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTCTAGTCTCACTGGGCTTC	0.502													30	59					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179650431	179650431	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179650431G>A	uc010zfg.1	-	15	2633	c.2409C>T	c.(2407-2409)GTC>GTT	p.V803V	TTN_uc010zfh.1_Silent_p.V757V|TTN_uc010zfi.1_Silent_p.V757V|TTN_uc010zfj.1_Silent_p.V757V|TTN_uc002unb.2_Silent_p.V803V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	803							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATCCACATGGACTAATCTTT	0.418													34	98					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179650730	179650730	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179650730C>T	uc010zfg.1	-	14	2439	c.2215G>A	c.(2215-2217)GAA>AAA	p.E739K	TTN_uc010zfh.1_Missense_Mutation_p.E693K|TTN_uc010zfi.1_Missense_Mutation_p.E693K|TTN_uc010zfj.1_Missense_Mutation_p.E693K|TTN_uc002unb.2_Missense_Mutation_p.E739K|TTN_uc010frg.1_Missense_Mutation_p.E321K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	739							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAATGCGTTCCTTATATCCG	0.552													29	69					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179654826	179654826	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179654826C>T	uc010zfg.1	-	12	2041	c.1817G>A	c.(1816-1818)AGG>AAG	p.R606K	TTN_uc010zfh.1_Missense_Mutation_p.R560K|TTN_uc010zfi.1_Missense_Mutation_p.R560K|TTN_uc010zfj.1_Missense_Mutation_p.R560K|TTN_uc002unb.2_Missense_Mutation_p.R606K|TTN_uc010frg.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	606							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACTGTTTTCCTAGTTTCCTT	0.313													19	49					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179659733	179659733	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179659733G>A	uc010zfg.1	-	7	1385	c.1161C>T	c.(1159-1161)ACC>ACT	p.T387T	TTN_uc010zfh.1_Silent_p.T387T|TTN_uc010zfi.1_Silent_p.T387T|TTN_uc010zfj.1_Silent_p.T387T|TTN_uc002unb.2_Silent_p.T387T|TTN_uc010frg.1_Silent_p.T61T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	387							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACCACTGATGGTCACTTGCT	0.557													24	73					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179664562	179664562	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179664562C>T	uc002und.2	-	5	884	c.659G>A	c.(658-660)CGA>CAA	p.R220Q	TTN_uc010zfg.1_Missense_Mutation_p.R220Q|TTN_uc010zfh.1_Missense_Mutation_p.R220Q|TTN_uc010zfi.1_Missense_Mutation_p.R220Q|TTN_uc010zfj.1_Missense_Mutation_p.R220Q|TTN_uc002unb.2_Missense_Mutation_p.R220Q			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	220							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTTCAATTCGGGTTTGTCT	0.403													22	47					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179665278	179665278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179665278C>T	uc002und.2	-	4	652	c.427G>A	c.(427-429)GAA>AAA	p.E143K	TTN_uc010zfg.1_Missense_Mutation_p.E143K|TTN_uc010zfh.1_Missense_Mutation_p.E143K|TTN_uc010zfi.1_Missense_Mutation_p.E143K|TTN_uc010zfj.1_Missense_Mutation_p.E143K|TTN_uc002unb.2_Missense_Mutation_p.E143K			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	143							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTGGATTTCGGCTCCATCC	0.502													44	109					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179666962	179666962	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179666962C>T	uc002und.2	-	3	423	c.198G>A	c.(196-198)ACG>ACA	p.T66T	TTN_uc010zfg.1_Silent_p.T66T|TTN_uc010zfh.1_Silent_p.T66T|TTN_uc010zfi.1_Silent_p.T66T|TTN_uc010zfj.1_Silent_p.T66T|TTN_uc002unb.2_Silent_p.T66T			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	66							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGGCGGGGATCGTCAGTTTAG	0.542													31	84					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179666989	179666989	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179666989G>A	uc002und.2	-	3	396	c.171C>T	c.(169-171)TCC>TCT	p.S57S	TTN_uc010zfg.1_Silent_p.S57S|TTN_uc010zfh.1_Silent_p.S57S|TTN_uc010zfi.1_Silent_p.S57S|TTN_uc010zfj.1_Silent_p.S57S|TTN_uc002unb.2_Silent_p.S57S			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	57							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATCGCTAAAGGAGATCTGCA	0.527													23	61					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179718276	179718276	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179718276C>T	uc002unf.1	-	10	1468	c.1411G>A	c.(1411-1413)GAA>AAA	p.E471K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	471							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TTCACAGCTTCCTTTGTCTTG	0.423													33	80					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179720208	179720208	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179720208G>A	uc002unf.1	-	9	1258	c.1201C>T	c.(1201-1203)CCA>TCA	p.P401S		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	401							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TTATCACTTGGATAATTTAAG	0.294													21	47					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179720250	179720250	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179720250C>T	uc002unf.1	-	9	1216	c.1159G>A	c.(1159-1161)GAA>AAA	p.E387K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	387	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CTAACTTTTTCCATTTTCCTT	0.284													10	33					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179732796	179732796	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179732796G>A	uc002unf.1	-	6	863	c.806C>T	c.(805-807)GCC>GTC	p.A269V		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	269							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TAAGGAAAGGGCCAGTCTGTG	0.522													16	72					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179732833	179732833	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179732833C>T	uc002unf.1	-	6	826	c.769G>A	c.(769-771)GAA>AAA	p.E257K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	257							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GCTTGCTTTTCCTGAGAGCAC	0.517													26	64					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179733990	179733990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179733990C>T	uc002unf.1	-	5	580	c.523G>A	c.(523-525)GAG>AAG	p.E175K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	175							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CCAGTTAACTCCTCTGATTCT	0.338													9	64					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179736188	179736188	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179736188C>T	uc002unf.1	-	4	503	c.446G>A	c.(445-447)CGA>CAA	p.R149Q		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	149							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CCATTTTTGTCGTAGATCTAA	0.393													74	157					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179737040	179737040	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:179737040C>T	uc002unf.1	-	3	232	c.175_splice	c.e3-1	p.A59_splice		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141								protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCTCTTTTGCCTGTTAAATTA	0.338													18	50					0	0	1	0	0
ZNF385B	151126	broad.mit.edu	37	2	180348073	180348073	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:180348073G>A	uc002unn.3	-	6	1200	c.596C>T	c.(595-597)CCT>CTT	p.P199L	ZNF385B_uc002unj.2_Missense_Mutation_p.P97L|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Missense_Mutation_p.P96L|ZNF385B_uc002unm.2_Missense_Mutation_p.P123L	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	199						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			GTCCTTGGAAGGAACCATTTT	0.458													5	77					0	0	1	0	0
ZNF385B	151126	broad.mit.edu	37	2	180383269	180383269	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:180383269G>A	uc002unn.3	-	5	1097	c.493C>T	c.(493-495)CGC>TGC	p.R165C	ZNF385B_uc002unj.2_Missense_Mutation_p.R63C|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Missense_Mutation_p.R62C|ZNF385B_uc002unm.2_Missense_Mutation_p.R89C	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	165	Matrin-type 2.					nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			GAGTTAAAGCGAAGCTGACAG	0.353													41	100					0	0	1	0	0
ZNF385B	151126	broad.mit.edu	37	2	180634297	180634297	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:180634297C>T	uc002unn.3	-	3	790	c.186G>A	c.(184-186)GTG>GTA	p.V62V		NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	62	Matrin-type 1.					nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			TCAGCTGCTTCACTCGTTTGC	0.597													22	43					0	0	1	0	0
ZNF385B	151126	broad.mit.edu	37	2	180634324	180634324	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:180634324G>A	uc002unn.3	-	3	763	c.159C>T	c.(157-159)TCC>TCT	p.S53S		NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	53	Matrin-type 1.					nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			ATTTGCCGTTGGAATGCACCT	0.562													19	65					0	0	1	0	0
CWC22	57703	broad.mit.edu	37	2	180846610	180846611	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:180846610_180846611GG>AA	uc010frh.1	-	5	620_621	c.320_321CC>TT	c.(319-321)TCC>TTT	p.S107F	CWC22_uc002unp.2_Missense_Mutation_p.S107F	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	107						catalytic step 2 spliceosome	protein binding|RNA binding				0						CCTGAGCAGAGGAACTCTGAGT	0.421													8	18					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182347137	182347137	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182347137G>A	uc002unu.2	+	8	1654	c.891G>A	c.(889-891)ATG>ATA	p.M297I	ITGA4_uc010zfl.1_Missense_Mutation_p.M297I	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	297	FG-GAP 5.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TACATGAAATGAAAGGTAAAA	0.313													26	74					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182358140	182358140	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182358140C>T	uc002unu.2	+	11	2005	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F		NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	414	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	CGTCAACCTTCTCACAGGTAA	0.368													33	83					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182359477	182359477	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182359477C>T	uc002unu.2	+	12	2040	c.1277C>T	c.(1276-1278)TCG>TTG	p.S426L		NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	426	FG-GAP 7.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	ATCAGCAAATCGTTAAGTATG	0.308													41	93					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182363398	182363398	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182363398C>T	uc002unu.2	+	15	2352	c.1589C>T	c.(1588-1590)CCA>CTA	p.P530L	ITGA4_uc010frj.1_Missense_Mutation_p.P12L	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	530	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GCAGAGTCTCCACCAAGATTC	0.348													18	60					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182392093	182392093	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182392093G>A	uc002unu.2	+	22	3172	c.2409G>A	c.(2407-2409)GAG>GAA	p.E803E	ITGA4_uc010frj.1_Silent_p.E285E|ITGA4_uc002unv.2_Silent_p.E48E	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	803	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GCATGGTGGAGAAAATGAACT	0.328													23	62					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182392099	182392099	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182392099G>A	uc002unu.2	+	22	3178	c.2415G>A	c.(2413-2415)ATG>ATA	p.M805I	ITGA4_uc010frj.1_Missense_Mutation_p.M287I|ITGA4_uc002unv.2_Missense_Mutation_p.M50I	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	805	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TGGAGAAAATGAACTTAACTT	0.333													19	62					0	0	1	0	0
CERKL	375298	broad.mit.edu	37	2	182412572	182412572	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182412572C>T	uc002unx.2	-	10	1315	c.1214G>A	c.(1213-1215)AGG>AAG	p.R405K	CERKL_uc002uny.2_Missense_Mutation_p.R379K|CERKL_uc010zfm.1_Missense_Mutation_p.R361K|CERKL_uc002unz.2_Missense_Mutation_p.R127K|CERKL_uc002uoa.2_Missense_Mutation_p.R310K|CERKL_uc002uob.2_Missense_Mutation_p.R127K|CERKL_uc002uoc.2_Missense_Mutation_p.R266K|CERKL_uc010frk.2_Intron|CERKL_uc002uod.1_Missense_Mutation_p.R174K|CERKL_uc002unw.2_5'UTR	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	405					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TCCCTGTGCCCTCCTAAAAGA	0.393													62	129					0	0	1	0	0
NEUROD1	4760	broad.mit.edu	37	2	182543331	182543331	+	Missense_Mutation	SNP	G	A	A	rs147793698	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182543331G>A	uc002uof.2	-	2	493	c.257C>T	c.(256-258)CCC>CTC	p.P86L	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	86					amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			CTTCTTTTTGGGGCCGCGTCT	0.408													7	35					0	0	1	0	0
SSFA2	6744	broad.mit.edu	37	2	182780880	182780880	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182780880C>T	uc002uoi.2	+	11	2835	c.2513C>T	c.(2512-2514)CCA>CTA	p.P838L	SSFA2_uc002uoh.2_Missense_Mutation_p.P838L|SSFA2_uc002uoj.2_Missense_Mutation_p.P838L|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.P685L|SSFA2_uc002uol.2_Missense_Mutation_p.P685L|SSFA2_uc002uom.2_Missense_Mutation_p.P306L	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	838						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			GCTCCACCACCAATGTCTCAG	0.547													32	98					0	0	1	0	0
SSFA2	6744	broad.mit.edu	37	2	182781010	182781010	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:182781010C>T	uc002uoi.2	+	11	2965	c.2643C>T	c.(2641-2643)TTC>TTT	p.F881F	SSFA2_uc002uoh.2_Silent_p.F881F|SSFA2_uc002uoj.2_Silent_p.F881F|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Silent_p.F728F|SSFA2_uc002uol.2_Silent_p.F728F|SSFA2_uc002uom.2_Silent_p.F349F	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	881						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			GTAGTGCCTTCGCTTCCCCTT	0.517													11	103					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183053786	183053786	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:183053786C>T	uc002uos.2	-	12	1259	c.1175G>A	c.(1174-1176)GGA>GAA	p.G392E	PDE1A_uc010zfp.1_Missense_Mutation_p.G288E|PDE1A_uc002uoq.1_Missense_Mutation_p.G392E|PDE1A_uc010zfq.1_Missense_Mutation_p.G392E|PDE1A_uc002uor.2_Missense_Mutation_p.G376E|PDE1A_uc002uou.2_Missense_Mutation_p.G358E	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	392	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TTCTTTATCTCCCTGGAGAAA	0.393													41	101					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183104878	183104878	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:183104878C>T	uc002uos.2	-	4	441	c.357G>A	c.(355-357)CGG>CGA	p.R119R	PDE1A_uc010zfp.1_Silent_p.R15R|PDE1A_uc002uoq.1_Silent_p.R119R|PDE1A_uc010zfq.1_Silent_p.R119R|PDE1A_uc002uor.2_Silent_p.R103R|PDE1A_uc002uou.2_Silent_p.R85R	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	119					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			GCACAATGCTCCGAAATTTTG	0.418													31	113					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183104895	183104896	+	Missense_Mutation	DNP	CC	TT	TT	rs145482728		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:183104895_183104896CC>TT	uc002uos.2	-	4	423_424	c.339_340GG>AA	c.(337-342)GAGGAA>GAAAAA	p.E114K	PDE1A_uc010zfp.1_Missense_Mutation_p.E10K|PDE1A_uc002uoq.1_Missense_Mutation_p.E114K|PDE1A_uc010zfq.1_Missense_Mutation_p.E114K|PDE1A_uc002uor.2_Missense_Mutation_p.E98K|PDE1A_uc002uou.2_Missense_Mutation_p.E80K	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	114					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding	p.E114K(1)		skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TTTGGTTTTTCCTCAGGTTTCT	0.416													31	111					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183104955	183104955	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:183104955G>T	uc002uos.2	-	4	364	c.280C>A	c.(280-282)CGG>AGG	p.R94R	PDE1A_uc010zfp.1_5'UTR|PDE1A_uc002uoq.1_Silent_p.R94R|PDE1A_uc010zfq.1_Silent_p.R94R|PDE1A_uc002uor.2_Silent_p.R78R|PDE1A_uc002uou.2_Silent_p.R60R	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	94					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			AACCAGTCCCGGACTTCAGAT	0.393													30	68					8.88839e-20	8.93603e-20	1	1	0
DNAJC10	54431	broad.mit.edu	37	2	183586769	183586769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:183586769C>T	uc002uow.1	+	5	800	c.385C>T	c.(385-387)CCT>TCT	p.P129S	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Missense_Mutation_p.P129S|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	129					apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TGATGATGATCCTGAAATCAT	0.209													43	98					0	0	1	0	0
DNAJC10	54431	broad.mit.edu	37	2	183605973	183605973	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:183605973C>T	uc002uow.1	+	13	1496	c.1081C>T	c.(1081-1083)CGT>TGT	p.R361C	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Missense_Mutation_p.R315C|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	361					apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TTTTAAGGATCGTTTGGCTCA	0.318													6	46					0	0	1	0	0
FRZB	2487	broad.mit.edu	37	2	183731065	183731065	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:183731065G>A	uc002upa.1	-	1	434	c.216C>T	c.(214-216)TTC>TTT	p.F72F		NM_001463	NP_001454	Q92765	SFRP3_HUMAN	frizzled-related protein precursor	72	FZ.				brain development|cochlea morphogenesis|gonad development|mammary gland involution|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of hepatocyte differentiation|positive regulation of apoptosis|positive regulation of fat cell differentiation|skeletal system development|vasculature development|Wnt receptor signaling pathway	cytoplasm|extracellular space|membrane	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.109)|Epithelial(96;0.231)			GCAGACCTTCGAACTGCTCGA	0.602													26	46					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185798354	185798354	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185798354G>A	uc002uph.2	+	3	874	c.280G>A	c.(280-282)GAA>AAA	p.E94K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	94						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GAAACAAAGGGAATTTGCTCG	0.358													24	66					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800866	185800866	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185800866G>A	uc002uph.2	+	4	1337	c.743G>A	c.(742-744)AGA>AAA	p.R248K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	248						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GGATTTAGCAGAAAAAGTAGA	0.428													45	138					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800940	185800940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185800940G>A	uc002uph.2	+	4	1411	c.817G>A	c.(817-819)GAG>AAG	p.E273K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	273						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GAGTTCTGAGGAGAAAACTAA	0.393													26	103					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800953	185800953	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185800953C>T	uc002uph.2	+	4	1424	c.830C>T	c.(829-831)TCT>TTT	p.S277F		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	277						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAAACTAACTCTTTTCATCCA	0.368													20	93					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801106	185801106	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185801106C>T	uc002uph.2	+	4	1577	c.983C>T	c.(982-984)TCA>TTA	p.S328L		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	328						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGTCAAAATTCAGTCCCATTA	0.323													17	45					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801491	185801491	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185801491C>T	uc002uph.2	+	4	1962	c.1368C>T	c.(1366-1368)AGC>AGT	p.S456S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	456						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TTTCCTATAGCTGTAATCCTC	0.353													40	108					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801863	185801863	+	Silent	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185801863A>C	uc002uph.2	+	4	2334	c.1740A>C	c.(1738-1740)ATA>ATC	p.I580I		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	580						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ACAACAAAATAAGGTTGAAAG	0.289													24	65					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802134	185802134	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185802134G>A	uc002uph.2	+	4	2605	c.2011G>A	c.(2011-2013)GAA>AAA	p.E671K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	671						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAGTGACAATGAAGAAATGTG	0.313													28	94					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802259	185802259	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185802259G>A	uc002uph.2	+	4	2730	c.2136G>A	c.(2134-2136)GGG>GGA	p.G712G		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	712						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TACATTCTGGGAAACATAATT	0.308													26	71					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802809	185802809	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185802809G>A	uc002uph.2	+	4	3280	c.2686G>A	c.(2686-2688)GAG>AAG	p.E896K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	896						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGGTGAAACTGAGCATTTAGA	0.403													28	95					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802863	185802863	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185802863C>T	uc002uph.2	+	4	3334	c.2740C>T	c.(2740-2742)CCC>TCC	p.P914S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	914						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TTCCAATGATCCCACCACATC	0.398													22	75					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803521	185803521	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185803521C>T	uc002uph.2	+	4	3992	c.3398C>T	c.(3397-3399)TCC>TTC	p.S1133F		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1133						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CAGTTTCTTTCCCAAATCCCA	0.368													37	79					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803596	185803597	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:185803596_185803597GG>AA	uc002uph.2	+	4	4067_4068	c.3473_3474GG>AA	c.(3472-3474)GGG>GAA	p.G1158E		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1158						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CTTTGTCCTGGGAACCAGCCAA	0.51													60	131					0	0	1	0	0
ZC3H15	55854	broad.mit.edu	37	2	187370268	187370268	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:187370268C>T	uc002upo.2	+	7	1033	c.808C>T	c.(808-810)CTT>TTT	p.L270F		NM_018471	NP_060941	Q8WU90	ZC3HF_HUMAN	erythropoietin 4 immediate early response	270	Potential.					cytoplasm|nucleolus|plasma membrane	nucleic acid binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Epithelial(96;0.0922)|all cancers(119;0.233)			GATTGATAAACTTGAACAAGA	0.393													11	60					0	0	1	0	0
FAM171B	165215	broad.mit.edu	37	2	187627274	187627274	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:187627274C>T	uc002ups.2	+	8	2317	c.2205C>T	c.(2203-2205)ATC>ATT	p.I735I	FAM171B_uc002upr.1_Silent_p.I702I|FAM171B_uc002upt.2_Silent_p.I204I	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	735	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						AGCCCAAGATCCTTTACTTAG	0.488													33	97					0	0	1	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187692815	187692815	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:187692815C>T	uc002upu.1	-	9	1838	c.1798G>A	c.(1798-1800)GAA>AAA	p.E600K		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	600					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CGTGTAATTTCCCCCATACAG	0.343													22	46					0	0	1	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187694567	187694567	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:187694567G>A	uc002upu.1	-	8	1022	c.982C>T	c.(982-984)CTC>TTC	p.L328F		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	328					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			ATCAGTTGGAGAGGCAGTGAT	0.393													34	133					0	0	1	0	0
CALCRL	10203	broad.mit.edu	37	2	188228210	188228210	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:188228210T>A	uc002upv.3	-	9	1068	c.520A>T	c.(520-522)ATT>TTT	p.I174F	CALCRL_uc010frt.2_Missense_Mutation_p.I174F	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	174	Helical; Name=2; (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			TGTAAGGTAATCCTTTGGCAA	0.353													20	81					0	0	1	0	0
CALCRL	10203	broad.mit.edu	37	2	188243719	188243719	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:188243719C>T	uc002upv.3	-	8	996	c.448G>A	c.(448-450)GGA>AGA	p.G150R	CALCRL_uc010frt.2_Missense_Mutation_p.G150R	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	150	Helical; Name=1; (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			ATAGACAATCCGTGTCCAATT	0.294													18	167					0	0	1	0	0
TFPI	7035	broad.mit.edu	37	2	188332533	188332533	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:188332533C>T	uc002upx.2	-	7	788	c.755G>A	c.(754-756)GGA>GAA	p.G252E	TFPI_uc002upy.2_Missense_Mutation_p.G252E|TFPI_uc002upz.2_Missense_Mutation_p.G248E	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	252	BPTI/Kunitz inhibitor 3.				blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	GTTTTCATTTCCCCCACATCC	0.393													41	118					0	0	1	0	0
TFPI	7035	broad.mit.edu	37	2	188349653	188349653	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:188349653C>T	uc002upx.2	-	5	453	c.420G>A	c.(418-420)AGG>AGA	p.R140R	TFPI_uc002upy.2_Silent_p.R140R|TFPI_uc002upz.2_Silent_p.R136R|TFPI_uc002uqa.2_Silent_p.R140R|TFPI_uc002uqb.2_Silent_p.R140R	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	140	BPTI/Kunitz inhibitor 2.				blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	TATAAAAATACCTGGTAATAT	0.343													7	63					0	0	1	0	0
DIRC1	116093	broad.mit.edu	37	2	189599363	189599363	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189599363C>T	uc002uqi.1	-	2	556	c.285G>A	c.(283-285)TGG>TGA	p.W95*		NM_052952	NP_443184	Q969H9	DIRC1_HUMAN	disrupted in renal carcinoma 1	95											0			OV - Ovarian serous cystadenocarcinoma(117;0.00842)|Epithelial(96;0.102)			TTAATATTTTCCACCCCCTCA	0.373													57	153					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189849638	189849638	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189849638G>A	uc002uqj.1	+	2	349	c.232G>A	c.(232-234)GAA>AAA	p.E78K		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	78	VWFC.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CCCCAACCCAGAAATTCCATT	0.418													16	65					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189850395	189850395	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189850395C>T	uc002uqj.1	+	4	455	c.338C>T	c.(337-339)CCT>CTT	p.P113L		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	113					axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TTTTAGGGCCCTCCTGGTATT	0.413													7	13					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189852856	189852856	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189852856C>T	uc002uqj.1	+	6	695	c.578C>T	c.(577-579)TCC>TTC	p.S193F		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	193	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CATCCTGGTTCCCCTGTAAGT	0.398													39	96					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189855065	189855065	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189855065C>T	uc002uqj.1	+	10	894	c.777C>T	c.(775-777)TTC>TTT	p.F259F	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	259	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TACCTGGATTCCCTGGTATGA	0.348													15	30					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189856244	189856244	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189856244C>T	uc002uqj.1	+	12	1001	c.884C>T	c.(883-885)GCT>GTT	p.A295V	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	295	Triple-helical region.			NGA -> DGS (in Ref. 9; AA sequence).	axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GAAAATGGAGCTCCTGGACCC	0.318													21	49					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189863437	189863437	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189863437G>A	uc002uqj.1	+	29	2132	c.2015G>A	c.(2014-2016)GGA>GAA	p.G672E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	672	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGAGCTCCAGGAGGCAAGGTA	0.373													21	41					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189868140	189868140	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189868140C>T	uc002uqj.1	+	37	2674	c.2557C>T	c.(2557-2559)CCT>TCT	p.P853S		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	853	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CATATAGGGTCCTCCTGGTCC	0.383													14	43					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189868721	189868721	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189868721C>T	uc002uqj.1	+	39	2792	c.2675C>T	c.(2674-2676)CCC>CTC	p.P892L		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	892	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	AACCCAGGACCCCCAGGTCCC	0.428													4	25					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189872637	189872637	+	Silent	SNP	C	T	T	rs148918486		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189872637C>T	uc002uqj.1	+	46	3507	c.3390C>T	c.(3388-3390)ATC>ATT	p.I1130I		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1130	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	AGGGTGCAATCGGCAGTCCAG	0.468													32	85					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189873680	189873680	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189873680C>T	uc002uqj.1	+	48	3673	c.3556C>T	c.(3556-3558)CCT>TCT	p.P1186S		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1186	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GCAACCAGGCCCTCCTGGACC	0.557													25	90					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189875434	189875434	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189875434C>T	uc002uqj.1	+	50	4189	c.4072C>T	c.(4072-4074)CGA>TGA	p.R1358*		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1358	Fibrillar collagen NC1.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGCATTCCTTCGACTTCTCTC	0.428													26	115					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189898822	189898822	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189898822C>T	uc002uqk.2	-	54	4749	c.4474G>A	c.(4474-4476)GAA>AAA	p.E1492K	COL5A2_uc010frx.2_Missense_Mutation_p.E1068K	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1492	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GGCCCAATTTCAACGCCGAAT	0.463													30	53					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189910578	189910578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189910578C>T	uc002uqk.2	-	46	3532	c.3257G>A	c.(3256-3258)GGA>GAA	p.G1086E	COL5A2_uc010frx.2_Missense_Mutation_p.G662E	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1086					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GCCAGGAGTTCCAGGGGCACC	0.498													34	84					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189912956	189912957	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189912956_189912957CC>TT	uc002uqk.2	-	45	3454_3455	c.3179_3180GG>AA	c.(3178-3180)CGG>CAA	p.R1060Q	COL5A2_uc010frx.2_Missense_Mutation_p.R636Q	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1060					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CAGCACCATCCCGTCCTGGGGT	0.347													22	55					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189923576	189923576	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189923576C>T	uc002uqk.2	-	32	2404	c.2129G>A	c.(2128-2130)AGA>AAA	p.R710K	COL5A2_uc010frx.2_Missense_Mutation_p.R286K	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	710					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			AATACTTACTCTAGGTCCTAA	0.343													10	35					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189931480	189931480	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189931480C>T	uc002uqk.2	-	22	1705	c.1430G>A	c.(1429-1431)GGA>GAA	p.G477E	COL5A2_uc010frx.2_Intron	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	477					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GCCAGCTTCTCCTTTGAAACC	0.378													45	113					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189964865	189964865	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:189964865C>T	uc002uqk.2	-	4	612	c.337G>A	c.(337-339)GGA>AGA	p.G113R		NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	113					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCCTTTTGTCCCTGTGACATT	0.328													23	75					0	0	1	0	0
WDR75	84128	broad.mit.edu	37	2	190327291	190327291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:190327291C>T	uc002uql.1	+	9	920	c.860C>T	c.(859-861)CCG>CTG	p.P287L	WDR75_uc002uqm.1_Missense_Mutation_p.P223L|WDR75_uc002uqn.1_Missense_Mutation_p.P65L|WDR75_uc002uqo.1_Missense_Mutation_p.P65L	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	287						nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			GAGTTTCTCCCGCGTTTAGGA	0.428													50	115					0	0	1	0	0
WDR75	84128	broad.mit.edu	37	2	190328438	190328438	+	Missense_Mutation	SNP	G	A	A	rs144965982		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:190328438G>A	uc002uql.1	+	10	1016	c.956G>A	c.(955-957)CGA>CAA	p.R319Q	WDR75_uc002uqm.1_Missense_Mutation_p.R255Q|WDR75_uc002uqn.1_Missense_Mutation_p.R97Q|WDR75_uc002uqo.1_Missense_Mutation_p.R97Q	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	319	WD 5.					nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			ATTATTCACCGAAACCTTGAA	0.279													38	81					0	0	1	0	0
WDR75	84128	broad.mit.edu	37	2	190340087	190340087	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:190340087G>A	uc002uql.1	+	21	2497	c.2437G>A	c.(2437-2439)GAA>AAA	p.E813K	WDR75_uc002uqm.1_Missense_Mutation_p.E749K|WDR75_uc002uqn.1_Missense_Mutation_p.E591K|WDR75_uc002uqo.1_Missense_Mutation_p.E591K	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	813						nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			AAAATCTGAAGAAAAAGAACT	0.368													9	50					0	0	1	0	0
SLC40A1	30061	broad.mit.edu	37	2	190437675	190437675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:190437675G>A	uc002uqp.3	-	4	635	c.284C>T	c.(283-285)TCG>TTG	p.S95L	SLC40A1_uc002uqq.2_Missense_Mutation_p.S95L	NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	95	Helical; (Potential).				anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			TACCACCAGCGAGGTCTGGGC	0.413													15	67					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	190788122	190788122	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:190788122G>A	uc002uro.2	+	1	204	c.61G>A	c.(61-63)GGG>AGG	p.G21R						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		TGTATTCATTGGGAATCTCAA	0.443													49	96					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	190788671	190788671	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:190788671A>T	uc002uro.2	+	1	753	c.610A>T	c.(610-612)ATT>TTT	p.I204F						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		CCTGGAAAAAATTGAAAAGGA	0.418													74	180					0	0	1	0	0
MSTN	2660	broad.mit.edu	37	2	190925110	190925110	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:190925110A>C	uc002urp.2	-	2	558	c.425T>G	c.(424-426)TTT>TGT	p.F142C		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	142					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TTTAGAGCTAAATTTAAAGAA	0.333													18	59					0	0	1	0	0
HIBCH	26275	broad.mit.edu	37	2	191117026	191117026	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:191117026G>A	uc002uru.2	-	8	608	c.525C>T	c.(523-525)TTC>TTT	p.F175F	HIBCH_uc002urv.2_Silent_p.F175F	NM_014362	NP_055177	Q6NVY1	HIBCH_HUMAN	3-hydroxyisobutyryl-Coenzyme A hydrolase isoform	175					branched chain family amino acid catabolic process	mitochondrial matrix	3-hydroxyisobutyryl-CoA hydrolase activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000586)|Epithelial(96;0.0286)|all cancers(119;0.0814)			CCACATCAGGGAACAGTCCTG	0.363													15	38					0	0	1	0	0
MFSD6	54842	broad.mit.edu	37	2	191300967	191300967	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:191300967C>T	uc002urz.2	+	3	536	c.212C>T	c.(211-213)TCC>TTC	p.S71F		NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	71					transmembrane transport	integral to membrane				ovary(2)	2						CTTCTAATTTCCAAGGTCTTT	0.398													39	98					0	0	1	0	0
GLS	2744	broad.mit.edu	37	2	191795172	191795172	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:191795172C>T	uc002usf.2	+	13	1699	c.1435C>T	c.(1435-1437)CCT>TCT	p.P479S	GLS_uc002use.2_Missense_Mutation_p.P479S|GLS_uc002usg.1_Missense_Mutation_p.P140S|GLS_uc002ush.2_Missense_Mutation_p.P140S|GLS_uc010zgi.1_Missense_Mutation_p.P50S|GLS_uc010zgj.1_5'UTR	NM_014905	NP_055720	O94925	GLSK_HUMAN	glutaminase precursor	479					cellular amino acid biosynthetic process|glutamate secretion|glutamine catabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity			ovary(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00625)|Epithelial(96;0.0744)|all cancers(119;0.181)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GGTTGGTCTTCCTGCAAAATC	0.363													15	67					0	0	1	0	0
STAT1	6772	broad.mit.edu	37	2	191874651	191874651	+	Missense_Mutation	SNP	G	A	A	rs11549696		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:191874651G>A	uc002usj.2	-	3	467	c.79C>T	c.(79-81)CCC>TCC	p.P27S	STAT1_uc010fse.1_Missense_Mutation_p.P27S|STAT1_uc002usk.2_Missense_Mutation_p.P27S|STAT1_uc002usl.2_Missense_Mutation_p.P29S|STAT1_uc010fsf.1_5'UTR	NM_007315	NP_009330	P42224	STAT1_HUMAN	signal transducer and activator of transcription	27					activation of caspase activity|I-kappaB kinase/NF-kappaB cascade|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway|tyrosine phosphorylation of STAT protein	cytosol|nucleolus|nucleoplasm	calcium ion binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|signal transducer activity			lung(3)|breast(3)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00434)|Epithelial(96;0.0555)|all cancers(119;0.141)		Fludarabine(DB01073)	ATTTCCATGGGAAAACTGTCA	0.408													10	186					0	0	1	0	0
STAT4	6775	broad.mit.edu	37	2	191941038	191941038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:191941038C>T	uc002usm.1	-	4	541	c.287G>A	c.(286-288)GGA>GAA	p.G96E	STAT4_uc002usn.1_Missense_Mutation_p.G96E|STAT4_uc002uso.2_Missense_Mutation_p.G96E|STAT4_uc002usp.3_Missense_Mutation_p.G96E	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	96					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			CATTGGATTTCCATGAAATTT	0.333													25	93					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192700856	192700856	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:192700856C>T	uc002utb.2	-	2	1401	c.1071G>A	c.(1069-1071)GAG>GAA	p.E357E		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	357						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	AGGTCGCCTTCTCAGCAGCCT	0.572													13	165					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192700901	192700901	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:192700901G>A	uc002utb.2	-	2	1356	c.1026C>T	c.(1024-1026)CTC>CTT	p.L342L		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	342						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GAGCGCTGGCGAGGGACGCTT	0.557													42	121					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192701045	192701045	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:192701045G>A	uc002utb.2	-	2	1212	c.882C>T	c.(880-882)CCC>CCT	p.P294P		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	294						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	CGAAAGTGAGGGGAGAAACCT	0.473													61	180					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192701300	192701300	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:192701300G>A	uc002utb.2	-	2	957	c.627C>T	c.(625-627)CCC>CCT	p.P209P		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	209						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	CCTCATCGTGGGGCAAATCAT	0.522													32	101					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192701434	192701434	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:192701434C>T	uc002utb.2	-	2	823	c.493G>A	c.(493-495)GAG>AAG	p.E165K		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	165						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GCAGGGATCTCATTTTCCTCC	0.468													16	19					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192711529	192711529	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:192711529C>T	uc002utb.2	-	1	453	c.123G>A	c.(121-123)GGG>GGA	p.G41G		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	41						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	CCTCTGTGTTCCCTAGGTTCA	0.607													33	62					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192711531	192711531	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:192711531C>T	uc002utb.2	-	1	451	c.121G>A	c.(121-123)GGG>AGG	p.G41R		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	41						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TCTGTGTTCCCTAGGTTCAGG	0.612													19	76					0	0	1	0	0
TMEFF2	23671	broad.mit.edu	37	2	193059173	193059173	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:193059173G>A	uc002utc.2	-	1	472	c.78C>T	c.(76-78)CCC>CCT	p.P26P	TMEFF2_uc002utd.1_Silent_p.P26P	NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	26						extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			GTAGCATGACGGGCAGCAGCA	0.597													27	72					0	0	1	0	0
SLC39A10	57181	broad.mit.edu	37	2	196581607	196581607	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196581607C>T	uc002utg.3	+	7	2157	c.1943C>T	c.(1942-1944)TCT>TTT	p.S648F	SLC39A10_uc002uth.3_Missense_Mutation_p.S648F|SLC39A10_uc010zgp.1_Missense_Mutation_p.S198F	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	648	His-rich.				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			CACAAGCATTCTCATCATTCC	0.488													21	108					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196619103	196619103	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196619103C>T	uc002utj.3	-	63	11823	c.11722G>A	c.(11722-11724)GAA>AAA	p.E3908K	DNAH7_uc002uti.3_Missense_Mutation_p.E391K	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3908					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCCATCACTTCATAGTCAAAC	0.463													11	80					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196636412	196636412	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196636412G>A	uc002utj.3	-	61	11506	c.11405C>T	c.(11404-11406)TCG>TTG	p.S3802L	DNAH7_uc002uti.3_Missense_Mutation_p.S285L	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3802					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTTACGCACGAATCTCTTAT	0.333													40	156					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196642613	196642613	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196642613G>A	uc002utj.3	-	59	11076	c.10975C>T	c.(10975-10977)CTA>TTA	p.L3659L	DNAH7_uc002uti.3_Silent_p.L142L	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3659					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AATTTGTTTAGAATGCTGCGC	0.473													23	60					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196642646	196642646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196642646C>T	uc002utj.3	-	59	11043	c.10942G>A	c.(10942-10944)GAT>AAT	p.D3648N	DNAH7_uc002uti.3_Missense_Mutation_p.D131N	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3648					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCCCAGTCATCGGTCACTCTG	0.473													17	54					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196651856	196651856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196651856G>A	uc002utj.3	-	58	10857	c.10756C>T	c.(10756-10758)CAT>TAT	p.H3586Y	DNAH7_uc002uti.3_Missense_Mutation_p.H69Y	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3586	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACCAAAGCATGAAAGAAACAC	0.388													21	92					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196659107	196659107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196659107C>T	uc002utj.3	-	57	10772	c.10671G>A	c.(10669-10671)ATG>ATA	p.M3557I	DNAH7_uc002uti.3_Missense_Mutation_p.M40I	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3557	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGATCGGGTCCATGAGGTATG	0.458													45	109					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196659121	196659121	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196659121G>A	uc002utj.3	-	57	10758	c.10657C>T	c.(10657-10659)CGA>TGA	p.R3553*	DNAH7_uc002uti.3_Nonsense_Mutation_p.R36*	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3553	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGGTATGATCGAATGATATTA	0.453													50	103					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196659194	196659194	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196659194G>A	uc002utj.3	-	57	10685	c.10584C>T	c.(10582-10584)TTC>TTT	p.F3528F	DNAH7_uc002uti.3_Silent_p.F11F	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3528	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTGACACAGGGAAATTTGGAG	0.418													41	98					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196659215	196659215	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196659215C>T	uc002utj.3	-	57	10664	c.10563G>A	c.(10561-10563)ACG>ACA	p.T3521T	DNAH7_uc002uti.3_Silent_p.T4T	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3521	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATGGGTAACTCGTTAGCCACA	0.383													35	86					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196671484	196671484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196671484G>A	uc002utj.3	-	54	10257	c.10156C>T	c.(10156-10158)CGT>TGT	p.R3386C		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3386					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTCAAGCAACGAATAATAAGC	0.393													12	46					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196682553	196682553	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196682553C>T	uc002utj.3	-	50	9393	c.9292G>A	c.(9292-9294)GTA>ATA	p.V3098I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3098	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AATAATGTTACCTATAAATGA	0.338													4	22					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196689128	196689128	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196689128C>T	uc002utj.3	-	49	9243	c.9142G>A	c.(9142-9144)GAA>AAA	p.E3048K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3048	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGAAGAGGTTCCAAAATAGGA	0.343													30	119					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196709789	196709789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196709789C>T	uc002utj.3	-	47	8983	c.8882G>A	c.(8881-8883)CGA>CAA	p.R2961Q		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2961	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTCCAAGTTCGAATTGTCAC	0.363													8	43					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196718101	196718101	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196718101G>A	uc002utj.3	-	46	8848	c.8747C>T	c.(8746-8748)GCT>GTT	p.A2916V		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2916					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCCGAGGTAAGCAACCACTCC	0.507													6	59					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196722403	196722403	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196722403G>T	uc002utj.3	-	44	8213	c.8112C>A	c.(8110-8112)GTC>GTA	p.V2704V		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2704	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TAACAAGCTTGACACCAGCAG	0.368													12	53					1.49906e-05	1.50136e-05	1	1	0
DNAH7	56171	broad.mit.edu	37	2	196723513	196723513	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196723513C>T	uc002utj.3	-	43	7853	c.7752G>A	c.(7750-7752)ATG>ATA	p.M2584I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2584	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATCTCTTTTTCATTTTCATTA	0.368													38	118					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196729430	196729430	+	Nonsense_Mutation	SNP	G	A	A	rs115474479	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196729430G>A	uc002utj.3	-	41	7050	c.6949C>T	c.(6949-6951)CGA>TGA	p.R2317*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2317	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATGGCAAATCGAAACAAGACA	0.443													51	148					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196737056	196737056	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196737056G>A	uc002utj.3	-	40	6652	c.6551C>T	c.(6550-6552)TCC>TTC	p.S2184F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2184	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AATGACACGGGAGAAATCACG	0.388													13	165					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196749452	196749452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196749452G>A	uc002utj.3	-	35	5721	c.5620C>T	c.(5620-5622)CGA>TGA	p.R1874*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1874					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTAGTTCTCGAAGAATCTTA	0.383													28	51					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196759830	196759830	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196759830G>A	uc002utj.3	-	30	4867	c.4766C>T	c.(4765-4767)TCC>TTC	p.S1589F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1589	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AATCTTCTCGGAAAAGAATGC	0.368													24	61					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196771386	196771386	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196771386C>T	uc002utj.3	-	27	4433	c.4332G>A	c.(4330-4332)CTG>CTA	p.L1444L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1444	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCCATACCTTCAGGTTATCTG	0.299													41	96					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196774900	196774900	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196774900G>A	uc002utj.3	-	25	4056	c.3955C>T	c.(3955-3957)CAT>TAT	p.H1319Y		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1319	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGGTGCAAATGAAGGGCTCCA	0.398													9	25					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196786849	196786849	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196786849T>C	uc002utj.3	-	24	3999	c.3898A>G	c.(3898-3900)AGG>GGG	p.R1300G		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1300	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATAACCAGCCTAGGGGAATTA	0.343													20	44					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196799399	196799399	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196799399C>T	uc002utj.3	-	21	3488	c.3387G>A	c.(3385-3387)GAG>GAA	p.E1129E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1129	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTGAAATAATCTCTATGAGTT	0.393													68	159					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196801382	196801382	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196801382G>A	uc002utj.3	-	20	3314	c.3213C>T	c.(3211-3213)TTC>TTT	p.F1071F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1071	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACAAAAAAAAGAATCTGGGGA	0.328													26	53					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196801453	196801453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196801453C>T	uc002utj.3	-	20	3243	c.3142G>A	c.(3142-3144)GAA>AAA	p.E1048K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1048	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCCAAAAGTTCATTAGATTTT	0.303													6	66					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196852768	196852768	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196852768G>A	uc002utj.3	-	13	1640	c.1539C>T	c.(1537-1539)CTC>CTT	p.L513L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	513	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GATTTTCTGCGAGGAAGTTAT	0.348													25	41					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196865582	196865582	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196865582G>A	uc002utj.3	-	12	1300	c.1199C>T	c.(1198-1200)CCA>CTA	p.P400L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	400	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GATGAAACCTGGATGTTCAAA	0.323													36	95					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196913028	196913028	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:196913028T>C	uc002utj.3	-	4	343	c.242A>G	c.(241-243)CAG>CGG	p.Q81R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	81	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACCATGGGACTGTTCATTTTT	0.363													24	75					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197066061	197066061	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:197066061G>A	uc002utm.1	-	29	4842	c.4659C>T	c.(4657-4659)TCC>TCT	p.S1553S	HECW2_uc002utl.1_Silent_p.S1197S	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1553	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CATAAAGCATGGAAAAGGATG	0.453													34	83					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197183412	197183412	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:197183412C>T	uc002utm.1	-	9	2385	c.2202G>A	c.(2200-2202)GGG>GGA	p.G734G	HECW2_uc002utl.1_Silent_p.G378G	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	734					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GCCAGACCTCCCCCAGCTCCT	0.652													14	32					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197184344	197184344	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:197184344C>T	uc002utm.1	-	9	1453	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K	HECW2_uc002utl.1_Missense_Mutation_p.E68K	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	424					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CCATTGTGTTCGATAGCATCT	0.512													22	45					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197189708	197189708	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:197189708C>T	uc002utm.1	-	6	920	c.737G>A	c.(736-738)CGA>CAA	p.R246Q	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	246	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TCTTACCTCTCGGTGCCAAAT	0.512													48	102					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197189858	197189858	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:197189858C>T	uc002utm.1	-	6	770	c.587G>A	c.(586-588)GGG>GAG	p.G196E	HECW2_uc002utl.1_Intron	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	196	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TTTCTTTAGCCCAACTGCCCT	0.294													41	91					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197208454	197208454	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:197208454C>T	uc002utm.1	-	3	510	c.327G>A	c.(325-327)AAG>AAA	p.K109K	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	109					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CACCCCTGTTCTTAGAATCCC	0.383													70	191					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197298127	197298127	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:197298127C>T	uc002utm.1	-	2	204	c.21G>A	c.(19-21)GAG>GAA	p.E7E		NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	7					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						AAAGCAGGTGCTCCCGGGCTG	0.522													21	53					0	0	1	0	0
CCDC150	284992	broad.mit.edu	37	2	197596851	197596851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:197596851C>T	uc002utp.1	+	27	3299	c.3164C>T	c.(3163-3165)TCT>TTT	p.S1055F	CCDC150_uc010zgs.1_Missense_Mutation_p.S702F	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	1055											0						CAGAGGCCTTCTGGGGAAGAC	0.423													22	73					0	0	1	0	0
ANKRD44	91526	broad.mit.edu	37	2	198051774	198051774	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:198051774G>A	uc002uuc.2	-	2	251	c.84C>T	c.(82-84)ATC>ATT	p.I28I	ANKRD44_uc002uua.1_Silent_p.I3I|ANKRD44_uc002uub.2_Silent_p.I28I|ANKRD44_uc010zgw.1_5'UTR|ANKRD44_uc002uud.1_Silent_p.I28I	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	28	ANK 1.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			CAGTTTTATGGATGAGCATCC	0.398													74	162					0	0	1	0	0
MARS2	92935	broad.mit.edu	37	2	198570227	198570227	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:198570227C>T	uc002uuq.2	+	1	141	c.98C>T	c.(97-99)TCC>TTC	p.S33F	uc002uup.2_Intron	NM_138395	NP_612404	Q96GW9	SYMM_HUMAN	methionine-tRNA synthetase 2 precursor	33					methionyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|methionine-tRNA ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					L-Methionine(DB00134)	AGTTCGGGCTCCCTCAGTGCC	0.622													17	60					0	0	1	0	0
PLCL1	5334	broad.mit.edu	37	2	198948911	198948911	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:198948911C>T	uc010fsp.2	+	2	961	c.670C>T	c.(670-672)CGA>TGA	p.R224*	PLCL1_uc002uuv.3_Nonsense_Mutation_p.R145*	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	224					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	CCTGGTTTCTCGAAGTAAGCA	0.478													33	85					0	0	1	0	0
PLCL1	5334	broad.mit.edu	37	2	198949941	198949941	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:198949941G>A	uc010fsp.2	+	2	1991	c.1700G>A	c.(1699-1701)AGG>AAG	p.R567K	PLCL1_uc002uuv.3_Missense_Mutation_p.R488K	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	567	Interaction with GABA A beta subunit (By similarity).				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	ATGTCTCGAAGGATGTCGGTA	0.393													28	92					0	0	1	0	0
PLCL1	5334	broad.mit.edu	37	2	198950188	198950188	+	Silent	SNP	C	T	T	rs151231252		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:198950188C>T	uc010fsp.2	+	2	2238	c.1947C>T	c.(1945-1947)ATC>ATT	p.I649I	PLCL1_uc002uuv.3_Silent_p.I570I	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	649	PI-PLC Y-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	CCATGAGGATCGATTCCAGTA	0.423													21	54					0	0	1	0	0
PLCL1	5334	broad.mit.edu	37	2	198950722	198950722	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:198950722C>T	uc010fsp.2	+	2	2772	c.2481C>T	c.(2479-2481)CCC>CCT	p.P827P	PLCL1_uc002uuv.3_Silent_p.P748P	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	827					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	GGCATGTTCCCCTGCGTTCTT	0.453													29	74					0	0	1	0	0
SATB2	23314	broad.mit.edu	37	2	200213792	200213792	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:200213792C>T	uc002uuy.1	-	7	1622	c.805G>A	c.(805-807)GAA>AAA	p.E269K	SATB2_uc010fsq.1_Missense_Mutation_p.E151K|SATB2_uc002uuz.1_Missense_Mutation_p.E269K|SATB2_uc002uva.1_Missense_Mutation_p.E269K|SATB2_uc002uvb.1_Missense_Mutation_p.E12K	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	269						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGAGACTGTTCGTTGGTTTTC	0.498													30	63					0	0	1	0	0
KCTD18	130535	broad.mit.edu	37	2	201371607	201371607	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:201371607G>A	uc002uvs.2	-	2	650	c.133C>T	c.(133-135)CGC>TGC	p.R45C	KCTD18_uc002uvt.2_Missense_Mutation_p.R45C|KCTD18_uc002uvu.1_Missense_Mutation_p.R45C	NM_152387	NP_689600	Q6PI47	KCD18_HUMAN	potassium channel tetramerization domain	45	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1						AGAGGAAAGCGACCACTGAAC	0.433													27	58					0	0	1	0	0
SGOL2	151246	broad.mit.edu	37	2	201438338	201438338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:201438338C>T	uc002uvw.2	+	7	3382	c.3269C>T	c.(3268-3270)CCA>CTA	p.P1090L	SGOL2_uc010zhd.1_Missense_Mutation_p.P1090L|SGOL2_uc010zhe.1_Missense_Mutation_p.P1090L	NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2 isoform 1	1090					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)|skin(2)	4						GATCCTTCTCCAGAGAGCCAT	0.368													55	109					0	0	1	0	0
SGOL2	151246	broad.mit.edu	37	2	201438535	201438535	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:201438535C>T	uc002uvw.2	+	7	3579	c.3466C>T	c.(3466-3468)CGT>TGT	p.R1156C	SGOL2_uc010zhd.1_Missense_Mutation_p.R1156C|SGOL2_uc010zhe.1_Missense_Mutation_p.R1156C	NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2 isoform 1	1156					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)|skin(2)	4						TGACAGTGTTCGTGAAGGTTT	0.363													31	91					0	0	1	0	0
AOX1	316	broad.mit.edu	37	2	201460056	201460056	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:201460056G>A	uc002uvx.2	+	3	266	c.165G>A	c.(163-165)ATG>ATA	p.M55I		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	55	2Fe-2S ferredoxin-type.				inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	GTACAGTGATGATATCACGAT	0.383													14	31					0	0	1	0	0
AOX1	316	broad.mit.edu	37	2	201485454	201485454	+	Missense_Mutation	SNP	G	A	A	rs148848561		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:201485454G>A	uc002uvx.2	+	17	1887	c.1786G>A	c.(1786-1788)GAG>AAG	p.E596K	AOX1_uc010zhf.1_Missense_Mutation_p.E152K|AOX1_uc010fsu.2_Intron	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	596					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	TGCCACGGGGGAGGCCATCTA	0.458													17	45					0	0	1	0	0
AOX1	316	broad.mit.edu	37	2	201507489	201507489	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:201507489G>A	uc002uvx.2	+	25	2913	c.2812G>A	c.(2812-2814)GAA>AAA	p.E938K	AOX1_uc010zhf.1_Missense_Mutation_p.E494K|AOX1_uc010fsu.2_Missense_Mutation_p.E304K	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	938					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	TTGTATCACGGAAGTTGCAGC	0.418													7	98					0	0	1	0	0
PPIL3	53938	broad.mit.edu	37	2	201746149	201746149	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:201746149G>A	uc002uwh.2	-	5	476	c.235C>T	c.(235-237)CTT>TTT	p.L79F	PPIL3_uc002uwi.2_Missense_Mutation_p.L83F|PPIL3_uc002uwj.2_Silent_p.I47I|PPIL3_uc002uwk.2_Missense_Mutation_p.L79F	NM_130906	NP_570981	Q9H2H8	PPIL3_HUMAN	peptidylprolyl isomerase-like 3 isoform PPIL3b	79	PPIase cyclophilin-type.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity|protein binding				0						TTTACCTTAAGATATTCACTG	0.338													20	37					0	0	1	0	0
CASP10	843	broad.mit.edu	37	2	202052442	202052442	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202052442G>A	uc002uxl.1	+	3	779	c.361G>A	c.(361-363)GAA>AAA	p.E121K	CASP10_uc002uxi.1_Missense_Mutation_p.E121K|CASP10_uc010zhn.1_Intron|CASP10_uc002uxj.1_Missense_Mutation_p.E121K|CASP10_uc002uxk.1_Missense_Mutation_p.E121K|CASP10_uc010fta.1_Missense_Mutation_p.E121K|CASP10_uc002uxm.1_Missense_Mutation_p.E121K|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	121	DED 2.				apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						CCTGCTCTACGAACTGTCAGA	0.294													34	95					0	0	1	0	0
CASP10	843	broad.mit.edu	37	2	202060586	202060586	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202060586C>T	uc002uxl.1	+	5	1017	c.599C>T	c.(598-600)CCT>CTT	p.P200L	CASP10_uc002uxi.1_Missense_Mutation_p.P200L|CASP10_uc010zhn.1_RNA|CASP10_uc002uxj.1_Missense_Mutation_p.P200L|CASP10_uc002uxk.1_Missense_Mutation_p.P200L|CASP10_uc010fta.1_Missense_Mutation_p.P200L|CASP10_uc002uxm.1_Missense_Mutation_p.P200L|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	200					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						GTGACACCTCCTGTAGACAAG	0.333													72	166					0	0	1	0	0
CASP10	843	broad.mit.edu	37	2	202072836	202072836	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202072836C>T	uc002uxl.1	+	8	1270	c.852C>T	c.(850-852)GGC>GGT	p.G284G	CASP10_uc010zhn.1_RNA|CASP10_uc002uxj.1_Silent_p.G284G|CASP10_uc002uxk.1_Silent_p.G241G|CASP10_uc010fta.1_Intron|CASP10_uc002uxm.1_Silent_p.G241G|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	284					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						ACCACAGAGGCCTCTGTGTCA	0.433													26	56					0	0	1	0	0
TRAK2	66008	broad.mit.edu	37	2	202245709	202245709	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202245709G>A	uc002uyb.3	-	16	2748	c.2302C>T	c.(2302-2304)CCT>TCT	p.P768S		NM_015049	NP_055864	O60296	TRAK2_HUMAN	trafficking protein, kinesin binding 2	768				Missing (in Ref. 2).		early endosome|plasma membrane	GABA receptor binding				0						AGGGATTTAGGGAGAGGCTGG	0.512													16	169					0	0	1	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202400940	202400940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202400940G>A	uc002uye.2	-	13	1358	c.1310C>T	c.(1309-1311)CCT>CTT	p.P437L	ALS2CR11_uc002uyf.2_Missense_Mutation_p.P437L|ALS2CR11_uc010fti.2_Intron	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	437										large_intestine(1)|ovary(1)|skin(1)	3						TGTGGGTGAAGGTGTTGATTC	0.403													58	114					0	0	1	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202446915	202446915	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202446915C>T	uc002uye.2	-	5	590	c.542G>A	c.(541-543)CGG>CAG	p.R181Q	ALS2CR11_uc002uyf.2_Missense_Mutation_p.R181Q|ALS2CR11_uc010fti.2_Missense_Mutation_p.R181Q	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	181										large_intestine(1)|ovary(1)|skin(1)	3						AATATTATTCCGCTTATCATC	0.303													21	89					0	0	1	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202446936	202446936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202446936G>A	uc002uye.2	-	5	569	c.521C>T	c.(520-522)CCC>CTC	p.P174L	ALS2CR11_uc002uyf.2_Missense_Mutation_p.P174L|ALS2CR11_uc010fti.2_Missense_Mutation_p.P174L	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	174										large_intestine(1)|ovary(1)|skin(1)	3						ATAACGTCTGGGAACCTCAAT	0.289													24	78					0	0	1	0	0
MPP4	58538	broad.mit.edu	37	2	202549867	202549867	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202549867C>T	uc002uyk.3	-	7	702	c.494G>A	c.(493-495)GGA>GAA	p.G165E	MPP4_uc010ftj.2_Missense_Mutation_p.G165E|MPP4_uc010zhq.1_Missense_Mutation_p.G165E|MPP4_uc010zhr.1_Missense_Mutation_p.G165E|MPP4_uc010zhs.1_Missense_Mutation_p.G121E|MPP4_uc002uyj.3_Missense_Mutation_p.G121E|MPP4_uc010zht.1_Missense_Mutation_p.G138E|MPP4_uc002uyl.3_RNA|MPP4_uc010ftk.2_Missense_Mutation_p.G165E|MPP4_uc002uym.1_Missense_Mutation_p.G134E|MPP4_uc002uyn.2_Missense_Mutation_p.G121E	NM_033066	NP_149055	Q96JB8	MPP4_HUMAN	membrane protein, palmitoylated 4	165	PDZ.					cytoplasm	protein binding				0						GATGGTGGCTCCCTGAAGAGA	0.542													3	16					0	0	1	0	0
MPP4	58538	broad.mit.edu	37	2	202552063	202552063	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202552063G>A	uc002uyk.3	-	5	519	c.311C>T	c.(310-312)TCC>TTC	p.S104F	MPP4_uc010ftj.2_Missense_Mutation_p.S104F|MPP4_uc010zhq.1_Missense_Mutation_p.S104F|MPP4_uc010zhr.1_Missense_Mutation_p.S104F|MPP4_uc010zhs.1_Missense_Mutation_p.S104F|MPP4_uc002uyj.3_Missense_Mutation_p.S104F|MPP4_uc010zht.1_Intron|MPP4_uc002uyl.3_RNA|MPP4_uc010ftk.2_Missense_Mutation_p.S104F|MPP4_uc002uym.1_Missense_Mutation_p.S117F|MPP4_uc002uyn.2_Missense_Mutation_p.S104F	NM_033066	NP_149055	Q96JB8	MPP4_HUMAN	membrane protein, palmitoylated 4	104	L27 2.					cytoplasm	protein binding				0						GATCTCAGGGGAAGTAGGGGT	0.413													3	9					0	0	1	0	0
ALS2	57679	broad.mit.edu	37	2	202593359	202593359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202593359G>A	uc002uyo.2	-	15	3073	c.2717C>T	c.(2716-2718)TCC>TTC	p.S906F	ALS2_uc002uyp.3_Missense_Mutation_p.S906F|ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	906	PH.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						CTTCCTCAAGGAATCCTGGAA	0.383													24	54					0	0	1	0	0
ALS2	57679	broad.mit.edu	37	2	202617958	202617958	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202617958G>A	uc002uyo.2	-	7	2004	c.1648C>T	c.(1648-1650)CCG>TCG	p.P550S	ALS2_uc002uyp.3_Missense_Mutation_p.P550S|ALS2_uc002uyq.2_Missense_Mutation_p.P550S	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	550	RCC1 4.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						ACACACAACGGTTGAAGCCTT	0.413													34	70					0	0	1	0	0
FZD7	8324	broad.mit.edu	37	2	202900660	202900660	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:202900660C>T	uc002uyw.1	+	1	1351	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F		NM_003507	NP_003498	O75084	FZD7_HUMAN	frizzled 7 precursor	430	Helical; Name=5; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(2)|ovary(1)|breast(1)	4						CGCCTCTGTTCGTCTACCTCT	0.627											OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	99					0	0	1	0	0
BMPR2	659	broad.mit.edu	37	2	203420344	203420344	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:203420344C>T	uc002uzf.3	+	12	3104	c.1956C>T	c.(1954-1956)ACC>ACT	p.T652T	BMPR2_uc010ftr.2_Intron	NM_001204	NP_001195	Q13873	BMPR2_HUMAN	bone morphogenetic protein receptor type II	652	Cytoplasmic (Potential).				anterior/posterior pattern formation|BMP signaling pathway|cellular response to starvation|lung alveolus development|mesoderm formation|negative regulation of cell growth|negative regulation of systemic arterial blood pressure|negative regulation of vasoconstriction|positive regulation of BMP signaling pathway|positive regulation of bone mineralization|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of epithelial cell migration|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|regulation of lung blood pressure|transcription from RNA polymerase II promoter|vascular endothelial growth factor receptor signaling pathway	integral to plasma membrane	ATP binding|metal ion binding|transforming growth factor beta receptor activity			ovary(4)|breast(2)|large_intestine(1)|stomach(1)|pancreas(1)	9						TTGGGCCAACCCCTGTCTGCT	0.443													18	64					0	0	1	0	0
BMPR2	659	broad.mit.edu	37	2	203420441	203420441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:203420441C>T	uc002uzf.3	+	12	3201	c.2053C>T	c.(2053-2055)CTC>TTC	p.L685F	BMPR2_uc010ftr.2_Intron	NM_001204	NP_001195	Q13873	BMPR2_HUMAN	bone morphogenetic protein receptor type II	685	Cytoplasmic (Potential).				anterior/posterior pattern formation|BMP signaling pathway|cellular response to starvation|lung alveolus development|mesoderm formation|negative regulation of cell growth|negative regulation of systemic arterial blood pressure|negative regulation of vasoconstriction|positive regulation of BMP signaling pathway|positive regulation of bone mineralization|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of epithelial cell migration|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|regulation of lung blood pressure|transcription from RNA polymerase II promoter|vascular endothelial growth factor receptor signaling pathway	integral to plasma membrane	ATP binding|metal ion binding|transforming growth factor beta receptor activity			ovary(4)|breast(2)|large_intestine(1)|stomach(1)|pancreas(1)	9						TGATGAGAATCTCATGGAGCA	0.448													18	81					0	0	1	0	0
FAM117B	150864	broad.mit.edu	37	2	203621974	203621974	+	Silent	SNP	C	T	T	rs140222767		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:203621974C>T	uc010zhx.1	+	6	1153	c.1143C>T	c.(1141-1143)CCC>CCT	p.P381P		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	381										ovary(1)	1						CTCCACCCCCCCTTGTACAGA	0.493													18	45					0	0	1	0	0
FAM117B	150864	broad.mit.edu	37	2	203630246	203630246	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:203630246C>T	uc010zhx.1	+	8	1539	c.1529C>T	c.(1528-1530)TCT>TTT	p.S510F		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	510										ovary(1)	1						AAAAGTGGATCTGCTTTCTGC	0.483													37	159					0	0	1	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203834641	203834641	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:203834641G>A	uc002uzo.2	+	10	1234	c.954_splice	c.e10-1	p.R318_splice	ALS2CR8_uc010zhz.1_Splice_Site|ALS2CR8_uc010ftu.1_Splice_Site|ALS2CR8_uc010zia.1_Splice_Site_p.R242_splice|ALS2CR8_uc010zib.1_Splice_Site_p.R242_splice|ALS2CR8_uc010zic.1_Splice_Site_p.R230_splice|ALS2CR8_uc002uzp.2_Splice_Site_p.R318_splice	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)											large_intestine(1)|ovary(1)	2						CTTGTATAAAGGATTTACATT	0.294													13	40					0	0	1	0	0
NBEAL1	65065	broad.mit.edu	37	2	204002981	204002981	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:204002981C>T	uc002uzt.3	+	29	4908	c.4575C>T	c.(4573-4575)ATC>ATT	p.I1525I	NBEAL1_uc002uzs.3_Silent_p.I235I	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	1525							binding			ovary(1)|skin(1)	2						TAGTGCTGATCATACAGGACT	0.373													27	74					0	0	1	0	0
CD28	940	broad.mit.edu	37	2	204591684	204591684	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:204591684G>A	uc002vah.3	+	2	603	c.381G>A	c.(379-381)AAG>AAA	p.K127K	CD28_uc002vag.1_RNA|CD28_uc010zio.1_Intron|CD28_uc010ftx.2_Intron|CD28_uc002vaj.3_RNA	NM_006139	NP_006130	P10747	CD28_HUMAN	CD28 antigen precursor	127	Extracellular (Potential).|Ig-like V-type.				cell surface receptor linked signaling pathway|cytokine biosynthetic process|humoral immune response|positive regulation of anti-apoptosis|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation of translation|positive regulation of viral genome replication|regulation of defense response to virus by virus|regulatory T cell differentiation|T cell costimulation|viral reproduction	cytosol|external side of plasma membrane|integral to plasma membrane	coreceptor activity|protease binding|SH3/SH2 adaptor activity				0						ACAATGAGAAGAGCAATGGAA	0.373													15	72					0	0	1	0	0
PARD3B	117583	broad.mit.edu	37	2	206050515	206050515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206050515C>T	uc002var.1	+	14	2159	c.1952C>T	c.(1951-1953)GCC>GTC	p.A651V	PARD3B_uc010fub.1_Missense_Mutation_p.A651V|PARD3B_uc002vao.1_Missense_Mutation_p.A651V|PARD3B_uc002vap.1_Missense_Mutation_p.A589V|PARD3B_uc002vaq.1_Missense_Mutation_p.A651V	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	651					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		GACGGATGGGCCGAGAGTGAA	0.438													40	94					0	0	1	0	0
PARD3B	117583	broad.mit.edu	37	2	206166306	206166306	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206166306G>A	uc002var.1	+	18	2718	c.2511G>A	c.(2509-2511)ACG>ACA	p.T837T	PARD3B_uc010fub.1_Silent_p.T837T|PARD3B_uc002vao.1_Silent_p.T837T|PARD3B_uc002vap.1_Silent_p.T775T|PARD3B_uc002vaq.1_Silent_p.T768T	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	837	Lys-rich.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		TCAAAAAAACgaaagagaagg	0.244													26	42					0	0	1	0	0
PARD3B	117583	broad.mit.edu	37	2	206166389	206166389	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206166389G>A	uc002var.1	+	18	2801	c.2594G>A	c.(2593-2595)AGG>AAG	p.R865K	PARD3B_uc010fub.1_Missense_Mutation_p.R865K|PARD3B_uc002vao.1_Missense_Mutation_p.R865K|PARD3B_uc002vap.1_Missense_Mutation_p.R803K|PARD3B_uc002vaq.1_Missense_Mutation_p.R796K	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	865	Lys-rich.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		gatccagaaaggaaaataaag	0.229													12	29					0	0	1	0	0
PARD3B	117583	broad.mit.edu	37	2	206305266	206305266	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206305266C>T	uc002var.1	+	20	3121	c.2914C>T	c.(2914-2916)CCA>TCA	p.P972S	PARD3B_uc002vao.1_Intron|PARD3B_uc002vap.1_Missense_Mutation_p.P910S|PARD3B_uc002vaq.1_Missense_Mutation_p.P903S	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	972					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		CTTTAGATCTCCATCTCCCCC	0.483													60	97					0	0	1	0	0
PARD3B	117583	broad.mit.edu	37	2	206480313	206480313	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206480313C>T	uc002var.1	+	23	3601	c.3394C>T	c.(3394-3396)CTC>TTC	p.L1132F	PARD3B_uc002vao.1_Missense_Mutation_p.L1031F|PARD3B_uc002vap.1_Missense_Mutation_p.L1070F|PARD3B_uc002vaq.1_Missense_Mutation_p.L1063F|uc010fuc.1_5'Flank	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	1132					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		CCCCACAGAGCTCAGGGTGGC	0.617													30	106					0	0	1	0	0
NRP2	8828	broad.mit.edu	37	2	206580936	206580936	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206580936C>T	uc002vaw.2	+	3	1062	c.271C>T	c.(271-273)CGG>TGG	p.R91W	NRP2_uc002vat.2_Missense_Mutation_p.R91W|NRP2_uc002vau.2_Missense_Mutation_p.R91W|NRP2_uc002vav.2_Missense_Mutation_p.R91W|NRP2_uc002vax.2_Missense_Mutation_p.R91W|NRP2_uc002vay.2_Missense_Mutation_p.R91W|NRP2_uc010fud.2_Missense_Mutation_p.R91W	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	91	Extracellular (Potential).|CUB 1.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TATCGAGATTCGGGATGGGGA	0.542													49	112					0	0	1	0	0
NRP2	8828	broad.mit.edu	37	2	206610475	206610476	+	Missense_Mutation	DNP	CG	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206610475_206610476CG>TA	uc002vaw.2	+	10	2438_2439	c.1647_1648CG>TA	c.(1645-1650)TTCGAA>TTTAAA	p.E550K	NRP2_uc002vau.2_Missense_Mutation_p.E550K|NRP2_uc002vav.2_Missense_Mutation_p.E550K|NRP2_uc002vax.2_Missense_Mutation_p.E550K|NRP2_uc002vay.2_Missense_Mutation_p.E550K	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	550	Extracellular (Potential).|F5/8 type C 2.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TGCAGCTGTTCGAAGGGAACAT	0.609													12	28					0	0	1	0	0
NRP2	8828	broad.mit.edu	37	2	206610599	206610599	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206610599G>A	uc002vaw.2	+	10	2562	c.1771G>A	c.(1771-1773)GGC>AGC	p.G591S	NRP2_uc002vau.2_Missense_Mutation_p.G591S|NRP2_uc002vav.2_Missense_Mutation_p.G591S|NRP2_uc002vax.2_Missense_Mutation_p.G591S|NRP2_uc002vay.2_Missense_Mutation_p.G591S	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	591	Extracellular (Potential).|F5/8 type C 2.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GGAGGTGCTGGGCTGTGACTG	0.612													15	48					0	0	1	0	0
NRP2	8828	broad.mit.edu	37	2	206628459	206628459	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206628459C>T	uc002vaw.2	+	13	2897	c.2106C>T	c.(2104-2106)CTC>CTT	p.L702L	NRP2_uc002vau.2_Silent_p.L702L|NRP2_uc002vav.2_Silent_p.L702L|NRP2_uc002vax.2_Silent_p.L702L|NRP2_uc002vay.2_Silent_p.L702L	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	702	Extracellular (Potential).|MAM.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						ATGCCCGGCTCATCAGCCCCC	0.622											OREG0015155	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	111					0	0	1	0	0
INO80D	54891	broad.mit.edu	37	2	206869639	206869639	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206869639G>A	uc002vaz.3	-	11	2942	c.2537C>T	c.(2536-2538)CCC>CTC	p.P846L		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	846					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						TGTTGTGTGGGGAGAGGTGAT	0.517													13	128					0	0	1	0	0
INO80D	54891	broad.mit.edu	37	2	206869967	206869967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:206869967G>A	uc002vaz.3	-	11	2614	c.2209C>T	c.(2209-2211)CGT>TGT	p.R737C		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	737					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						GTAGCAGAACGGAGCAGGTTC	0.522													15	48					0	0	1	0	0
GPR1	2825	broad.mit.edu	37	2	207041526	207041526	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207041526C>T	uc002vbl.3	-	3	832	c.446G>A	c.(445-447)CGA>CAA	p.R149Q	GPR1_uc010fue.2_Missense_Mutation_p.R149Q|GPR1_uc010fuf.2_Missense_Mutation_p.R149Q	NM_005279	NP_005270	P46091	GPR1_HUMAN	G protein-coupled receptor 1	149	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Lung NSC(271;7.93e-06)|Renal(323;0.000147)|Hepatocellular(293;0.000888)		UCEC - Uterine corpus endometrioid carcinoma (47;0.000241)|Epithelial(149;1.91e-37)|STAD - Stomach adenocarcinoma(1183;0.00178)|Lung(261;0.111)|LUSC - Lung squamous cell carcinoma(261;0.184)		CTTGAGGGTTCGATGCCGATG	0.463													35	86					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207169523	207169523	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207169523G>A	uc002vbp.2	+	5	521	c.271G>A	c.(271-273)GAA>AAA	p.E91K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	91	Poly-Glu.						nucleic acid binding|zinc ion binding			ovary(3)	3						TGAAGAAGAGGAAGAGGATGA	0.438													9	41					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207169910	207169910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207169910G>A	uc002vbp.2	+	5	908	c.658G>A	c.(658-660)GAC>AAC	p.D220N		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	220							nucleic acid binding|zinc ion binding			ovary(3)	3						TAGCAAATGTGACCCAAACAA	0.408													6	37					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170549	207170549	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207170549G>A	uc002vbp.2	+	5	1547	c.1297G>A	c.(1297-1299)GAA>AAA	p.E433K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	433							nucleic acid binding|zinc ion binding			ovary(3)	3						CCTTTCCAAGGAAGTACGTAC	0.353													29	66					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170663	207170663	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207170663G>A	uc002vbp.2	+	5	1661	c.1411G>A	c.(1411-1413)GAA>AAA	p.E471K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	471							nucleic acid binding|zinc ion binding			ovary(3)	3						GATTGTTAAAGAAATAAGTCT	0.333													12	28					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170729	207170729	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207170729G>A	uc002vbp.2	+	5	1727	c.1477G>A	c.(1477-1479)GAA>AAA	p.E493K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	493							nucleic acid binding|zinc ion binding			ovary(3)	3						TAGTAGTTCTGAAACGAATTT	0.393													12	51					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207173411	207173411	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207173411G>A	uc002vbp.2	+	5	4409	c.4159G>A	c.(4159-4161)GAA>AAA	p.E1387K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1387							nucleic acid binding|zinc ion binding			ovary(3)	3						ACCTGTCAAAGAAATAAATCT	0.353													21	35					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174649	207174649	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207174649G>A	uc002vbp.2	+	5	5647	c.5397G>A	c.(5395-5397)AGG>AGA	p.R1799R		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1799							nucleic acid binding|zinc ion binding			ovary(3)	3						ATTCTGTAAGGAACCTGAAAA	0.408													7	53					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174673	207174673	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207174673C>A	uc002vbp.2	+	5	5671	c.5421C>A	c.(5419-5421)GTC>GTA	p.V1807V		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1807							nucleic acid binding|zinc ion binding			ovary(3)	3						CAAAGGATGTCATAGAGGATA	0.408													29	48					3.57733e-08	3.58676e-08	1	1	0
ZDBF2	57683	broad.mit.edu	37	2	207174689	207174689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207174689G>A	uc002vbp.2	+	5	5687	c.5437G>A	c.(5437-5439)GAT>AAT	p.D1813N		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1813							nucleic acid binding|zinc ion binding			ovary(3)	3						GGATAATCCTGATGAACCAGT	0.393													28	55					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175678	207175678	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207175678G>A	uc002vbp.2	+	5	6676	c.6426G>A	c.(6424-6426)AAG>AAA	p.K2142K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2142							nucleic acid binding|zinc ion binding			ovary(3)	3						AGCTTCCAAAGAAAAGAAATT	0.358													20	71					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207176205	207176205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207176205G>A	uc002vbp.2	+	5	7203	c.6953G>A	c.(6952-6954)GGT>GAT	p.G2318D		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2318							nucleic acid binding|zinc ion binding			ovary(3)	3						CGACAGAAAGGTCCTTCTACA	0.483													17	16					0	0	1	0	0
ADAM23	8745	broad.mit.edu	37	2	207429762	207429762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207429762C>T	uc002vbq.2	+	14	1587	c.1364C>T	c.(1363-1365)TCC>TTC	p.S455F	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	455	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		TGCACAGAATCCTGGGGTGGC	0.363													34	101					0	0	1	0	0
LOC200726	200726	broad.mit.edu	37	2	207509150	207509150	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207509150C>T	uc010fuh.1	+	2	365	c.190C>T	c.(190-192)CGC>TGC	p.R64C		NM_001102659	NP_001096129			hypothetical protein LOC200726												0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.115)|Lung(261;0.133)		GTGGAAACCTCGCGTTTCCAA	0.488													5	35					0	0	1	0	0
DYTN	391475	broad.mit.edu	37	2	207528044	207528044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207528044C>T	uc002vbr.1	-	11	1333	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	406						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		GGAACCTTTTCAGTTGAAGAA	0.448													22	60					0	0	1	0	0
DYTN	391475	broad.mit.edu	37	2	207564458	207564458	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207564458C>T	uc002vbr.1	-	7	829	c.712G>A	c.(712-714)GGA>AGA	p.G238R		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	238	ZZ-type.					plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		TACCTGAGTCCCGTGATTGGG	0.527													4	42					0	0	1	0	0
DYTN	391475	broad.mit.edu	37	2	207564903	207564903	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207564903G>A	uc002vbr.1	-	6	638	c.521C>T	c.(520-522)CCT>CTT	p.P174L		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	174						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		ACTTTCCACAGGGCACAGAGC	0.527													35	79					0	0	1	0	0
MDH1B	130752	broad.mit.edu	37	2	207620226	207620226	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207620226G>A	uc002vbs.2	-	5	472	c.417C>T	c.(415-417)GCC>GCT	p.A139A	MDH1B_uc010ziw.1_Intron|MDH1B_uc010fui.2_Silent_p.A139A|MDH1B_uc010fuj.2_Silent_p.A41A|MDH1B_uc002vbt.2_Intron	NM_001039845	NP_001034934	Q5I0G3	MDH1B_HUMAN	malate dehydrogenase 1B, NAD (soluble)	139					carbohydrate metabolic process|malate metabolic process|tricarboxylic acid cycle		binding|malate dehydrogenase activity			ovary(3)|kidney(1)	4				LUSC - Lung squamous cell carcinoma(261;0.0763)|Epithelial(149;0.131)|Lung(261;0.145)		CAGGAGCAGAGGCACTGATAA	0.398													22	70					0	0	1	0	0
FASTKD2	22868	broad.mit.edu	37	2	207636626	207636626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:207636626C>T	uc002vbu.2	+	5	1409	c.999C>T	c.(997-999)GCC>GCT	p.A333A	FASTKD2_uc002vbv.2_Silent_p.A333A|FASTKD2_uc002vbx.2_Silent_p.A333A|FASTKD2_uc002vbw.1_Silent_p.A333A	NM_001136193	NP_001129665	Q9NYY8	FAKD2_HUMAN	FAST kinase domains 2	333					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(2)|skin(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0718)|Epithelial(149;0.119)|Lung(261;0.138)		AGATGAAAGCCTTGAGGGAAT	0.259													13	58					0	0	1	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208773295	208773295	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:208773295G>A	uc002vcl.2	-	6	2383	c.1893C>T	c.(1891-1893)TTC>TTT	p.F631F	PLEKHM3_uc002vcm.2_Missense_Mutation_p.S646F	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	631					intracellular signal transduction		metal ion binding			ovary(1)	1						ATTCTCTGGGGAAAATTCTGA	0.438													24	62					0	0	1	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208842195	208842195	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:208842195G>T	uc002vcl.2	-	3	1216	c.726C>A	c.(724-726)TTC>TTA	p.F242L	PLEKHM3_uc002vcm.2_Missense_Mutation_p.F242L	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	242	PH 1.				intracellular signal transduction		metal ion binding			ovary(1)	1						CGAGGCTGTAGAAGTATAAGT	0.448													41	135					2.37825e-27	2.39249e-27	1	1	0
CRYGC	1420	broad.mit.edu	37	2	208993030	208993031	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:208993030_208993031CC>TT	uc002vco.3	-	3	459_460	c.421_422GG>AA	c.(421-423)GGG>AAG	p.G141K		NM_020989	NP_066269	P07315	CRGC_HUMAN	crystallin, gamma C	141	Beta/gamma crystallin 'Greek key' 4.				visual perception	cytoplasm|nucleus	protein binding|structural constituent of eye lens				0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		GTATTGCCGCCCCCGGTAGTTG	0.629													37	87					0	0	1	0	0
CRYGA	1418	broad.mit.edu	37	2	209025752	209025752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:209025752G>A	uc002vcq.3	-	3	318	c.301C>T	c.(301-303)CTT>TTT	p.L101F		NM_014617	NP_055432	P11844	CRGA_HUMAN	crystallin, gamma A	101	Beta/gamma crystallin 'Greek key' 3.				visual perception		structural constituent of eye lens				0				Epithelial(149;0.067)|LUSC - Lung squamous cell carcinoma(261;0.0708)|Lung(261;0.135)		TCAGACATAAGGCCTCGGTAG	0.498													30	55					0	0	1	0	0
C2orf80	389073	broad.mit.edu	37	2	209045522	209045522	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:209045522C>T	uc002vcr.2	-	6	485	c.313G>A	c.(313-315)GAA>AAA	p.E105K		NM_001099334	NP_001092804	Q0P641	CB080_HUMAN	hypothetical protein LOC389073	105										skin(1)	1						TTAAAGACTTCCTCAATCGGG	0.358													29	84					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209165796	209165796	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:209165796C>T	uc002vcz.2	+	9	1344	c.1186C>T	c.(1186-1188)CGA>TGA	p.R396*	PIKFYVE_uc010fun.1_Nonsense_Mutation_p.R77*|PIKFYVE_uc002vcy.1_Nonsense_Mutation_p.R396*|PIKFYVE_uc002vcv.2_Nonsense_Mutation_p.R299*|PIKFYVE_uc002vcw.2_Nonsense_Mutation_p.R396*|PIKFYVE_uc002vcx.2_Nonsense_Mutation_p.R310*	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	396	DEP.				cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						CTGGCTAATCCGAAATGGGCA	0.388													15	63					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209179022	209179022	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:209179022C>T	uc002vcz.2	+	14	1859	c.1701C>T	c.(1699-1701)TCC>TCT	p.S567S	PIKFYVE_uc010fun.1_Silent_p.S248S|PIKFYVE_uc002vcy.1_Silent_p.S511S	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	567					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						ACTTAGAATCCTTATTTAATC	0.373													30	85					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209190194	209190194	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:209190194C>T	uc002vcz.2	+	20	2817	c.2659C>T	c.(2659-2661)CCT>TCT	p.P887S	PIKFYVE_uc010fun.1_Missense_Mutation_p.P568S|PIKFYVE_uc002vcy.1_Missense_Mutation_p.P831S	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	887					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						AATGCAAAACCCTTCATTCCA	0.468													34	90					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209190805	209190805	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:209190805C>T	uc002vcz.2	+	20	3428	c.3270C>T	c.(3268-3270)CTC>CTT	p.L1090L	PIKFYVE_uc010fun.1_Silent_p.L771L|PIKFYVE_uc002vcy.1_Silent_p.L1034L	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1090					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						GGTCTCCTCTCCTCAATAAAG	0.448													27	84					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209200558	209200558	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:209200558C>T	uc002vcz.2	+	26	4456	c.4298C>T	c.(4297-4299)TCT>TTT	p.S1433F	PIKFYVE_uc002vcy.1_Missense_Mutation_p.S1377F	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1433					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						AGACTTGCATCTTTGAAAACT	0.308													7	86					0	0	1	0	0
PTH2R	5746	broad.mit.edu	37	2	209358274	209358274	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:209358274G>A	uc002vdb.2	+	13	1756	c.1543G>A	c.(1543-1545)GAA>AAA	p.E515K	PTH2R_uc010zjb.1_Missense_Mutation_p.E526K|PTH2R_uc010fuo.1_Intron	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	515	Cytoplasmic (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GGAGACCAAGGAAGATAGTGG	0.522													19	50					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210557911	210557911	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:210557911C>T	uc002vde.1	+	7	1265	c.1017C>T	c.(1015-1017)CCC>CCT	p.P339P	MAP2_uc002vdc.1_Silent_p.P339P|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Silent_p.P335P	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	339					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	AAACATCGCCCTTTGCCCCTG	0.438													30	81					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210560616	210560616	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:210560616C>T	uc002vde.1	+	7	3970	c.3722C>T	c.(3721-3723)GCC>GTC	p.A1241V	MAP2_uc002vdc.1_Missense_Mutation_p.A1241V|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.A1237V	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1241					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	GAGATAGAAGCCCAGGGAGAA	0.493													8	56					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210574720	210574720	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:210574720C>T	uc002vde.1	+	12	5063	c.4815C>T	c.(4813-4815)ACC>ACT	p.T1605T	MAP2_uc002vdd.1_Silent_p.T306T|MAP2_uc002vdf.1_Silent_p.T249T|MAP2_uc002vdg.1_Silent_p.T249T|MAP2_uc002vdh.1_Silent_p.T306T|MAP2_uc002vdi.1_Silent_p.T1601T	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1605					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	CTCCTGGCACCCCACCAAGTT	0.562													46	98					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210595030	210595031	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:210595030_210595031CC>AT	uc002vde.1	+	15	5641_5642	c.5393_5394CC>AT	c.(5392-5394)TCC>TAT	p.S1798Y	MAP2_uc002vdd.1_Missense_Mutation_p.S530Y|MAP2_uc002vdf.1_Missense_Mutation_p.S473Y|MAP2_uc002vdg.1_Missense_Mutation_p.S442Y|MAP2_uc002vdh.1_Missense_Mutation_p.S499Y|MAP2_uc002vdi.1_Missense_Mutation_p.S1794Y	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1798					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	AGCAATGTCTCCTCGTCTGGAA	0.545													11	49					0	0	1	0	0
C2orf67	151050	broad.mit.edu	37	2	211018911	211018911	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211018911G>A	uc002vds.2	-	2	604	c.396C>T	c.(394-396)TTC>TTT	p.F132F	C2orf67_uc002vdt.2_Silent_p.F132F|C2orf67_uc002vdw.2_Silent_p.F132F|C2orf67_uc002vdy.1_Silent_p.F132F|C2orf67_uc002vdv.2_Silent_p.F132F|C2orf67_uc002vdx.1_Silent_p.F132F	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	132										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		CCTTTTTGATGAACTCTTCAG	0.368													35	85					0	0	1	0	0
MYL1	4632	broad.mit.edu	37	2	211158482	211158482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211158482C>T	uc002vec.2	-	5	650	c.521G>A	c.(520-522)GGT>GAT	p.G174D	MYL1_uc002veb.2_Missense_Mutation_p.G130D	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	174	EF-hand 3.				muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		GTCTTCTTGACCTGCCATCAG	0.428													51	216					0	0	1	0	0
MYL1	4632	broad.mit.edu	37	2	211163161	211163161	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211163161C>T	uc002vec.2	-	3	416	c.287G>A	c.(286-288)GGA>GAA	p.G96E	MYL1_uc002veb.2_Missense_Mutation_p.G52E	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	96					muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		GCTGGGGTTTCCCAGAACTTT	0.408													39	129					0	0	1	0	0
MYL1	4632	broad.mit.edu	37	2	211163245	211163245	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211163245G>A	uc002vec.2	-	3	332	c.203C>T	c.(202-204)TCC>TTC	p.S68F	MYL1_uc002veb.2_Missense_Mutation_p.S24F	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	68	EF-hand 1.				muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		GGTGATCTTGGAATCACCTGT	0.448													35	59					0	0	1	0	0
MYL1	4632	broad.mit.edu	37	2	211179661	211179661	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211179661C>T	uc002vec.2	-	1	235	c.106G>A	c.(106-108)GAA>AAA	p.E36K		NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	36					muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		TCAATTTTTTCTTCTTTGGGT	0.328													86	219					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211438116	211438116	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211438116A>T	uc002vee.3	+	2	353	c.221A>T	c.(220-222)AAT>ATT	p.N74I	CPS1_uc010fur.2_Missense_Mutation_p.N80I	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	74	Anthranilate phosphoribosyltransferase homolog.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GTGGTTTTTAATACTGGCCTG	0.433													21	93					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211456679	211456679	+	Missense_Mutation	SNP	G	A	A	rs149930500		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211456679G>A	uc002vee.3	+	10	1204	c.1072G>A	c.(1072-1074)GAT>AAT	p.D358N	CPS1_uc010fur.2_Missense_Mutation_p.D364N|CPS1_uc010fus.2_5'Flank	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	358	Glutamine amidotransferase type-1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GAATGTCAACGATCAAACAAA	0.353													8	40					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211521331	211521331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211521331C>T	uc002vee.3	+	30	3773	c.3641C>T	c.(3640-3642)ACC>ATC	p.T1214I	CPS1_uc010fur.2_Missense_Mutation_p.T1220I|CPS1_uc010fus.2_Missense_Mutation_p.T763I	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1214	ATP-grasp 2.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		CCCACACAAACCATCAGCCAA	0.403													18	69					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211523399	211523399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211523399G>A	uc002vee.3	+	31	3875	c.3743G>A	c.(3742-3744)GGA>GAA	p.G1248E	CPS1_uc010fur.2_Missense_Mutation_p.G1254E|CPS1_uc010fus.2_Missense_Mutation_p.G797E	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1248	ATP-grasp 2.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		CTTGTCAAAGGAAATGATGTC	0.433													7	62					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211541795	211541795	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:211541795C>T	uc002vee.3	+	37	4471	c.4339C>T	c.(4339-4341)CAT>TAT	p.H1447Y	CPS1_uc010fur.2_Missense_Mutation_p.H1453Y|CPS1_uc010fus.2_Missense_Mutation_p.H996Y	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1447					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TAAATTTGTCCATGATAATTA	0.378													37	148					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212295675	212295675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:212295675C>T	uc002veg.1	-	21	2736	c.2638G>A	c.(2638-2640)GGA>AGA	p.G880R	ERBB4_uc002veh.1_Missense_Mutation_p.G880R|ERBB4_uc010zji.1_Missense_Mutation_p.G870R|ERBB4_uc010zjj.1_Missense_Mutation_p.G870R	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	880	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CCCACCTTTCCTCCATCAGCA	0.363										TSP Lung(8;0.080)			48	115					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212537927	212537927	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:212537927C>T	uc002veg.1	-	14	1776	c.1678G>A	c.(1678-1680)GAG>AAG	p.E560K	ERBB4_uc002veh.1_Missense_Mutation_p.E560K|ERBB4_uc010zji.1_Missense_Mutation_p.E560K|ERBB4_uc010zjj.1_Missense_Mutation_p.E560K|ERBB4_uc010fut.1_Missense_Mutation_p.E560K	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	560	Extracellular (Potential).|Cys-rich.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TCCATCTTCTCACACTGGGGG	0.463										TSP Lung(8;0.080)			21	52					0	0	1	0	0
IKZF2	22807	broad.mit.edu	37	2	213872121	213872121	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:213872121G>A	uc002vem.2	-	8	1713	c.1544C>T	c.(1543-1545)TCA>TTA	p.S515L	IKZF2_uc010fuu.2_Missense_Mutation_p.S370L|IKZF2_uc002vej.2_Missense_Mutation_p.S462L|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Missense_Mutation_p.S441L|IKZF2_uc002vel.2_Missense_Mutation_p.S436L|IKZF2_uc010fuw.2_Missense_Mutation_p.S289L|IKZF2_uc010fux.2_Missense_Mutation_p.S289L|IKZF2_uc010fuy.2_Missense_Mutation_p.S443L|IKZF2_uc002ven.2_Missense_Mutation_p.S489L|IKZF2_uc002vei.2_Missense_Mutation_p.S293L	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	515	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		AATGTGTGATGAAAACTCATA	0.483													25	105					0	0	1	0	0
IKZF2	22807	broad.mit.edu	37	2	213872705	213872705	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:213872705G>A	uc002vem.2	-	8	1129	c.960C>T	c.(958-960)GCC>GCT	p.A320A	IKZF2_uc010fuu.2_Silent_p.A175A|IKZF2_uc002vej.2_Silent_p.A267A|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Silent_p.A246A|IKZF2_uc002vel.2_Silent_p.A241A|IKZF2_uc010fuw.2_Silent_p.A94A|IKZF2_uc010fux.2_Silent_p.A94A|IKZF2_uc010fuy.2_Silent_p.A248A|IKZF2_uc002ven.2_Silent_p.A294A|IKZF2_uc002vei.2_Silent_p.A98A	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	320					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		CATTGTTGATGGCTTGGTCCA	0.483													18	67					0	0	1	0	0
SPAG16	79582	broad.mit.edu	37	2	214727255	214727255	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:214727255G>A	uc002veq.2	+	11	1209	c.1117G>A	c.(1117-1119)GAC>AAC	p.D373N	SPAG16_uc010fuz.1_Missense_Mutation_p.D224N|SPAG16_uc002ver.2_Missense_Mutation_p.D319N|SPAG16_uc010zjk.1_Missense_Mutation_p.D279N	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	373	WD 1.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		CTGTGGCGAGGACCGACTCTG	0.502													31	79					0	0	1	0	0
SPAG16	79582	broad.mit.edu	37	2	214794828	214794828	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:214794828C>T	uc002veq.2	+	12	1451	c.1359C>T	c.(1357-1359)TCC>TCT	p.S453S	SPAG16_uc010fuz.1_Silent_p.S304S|SPAG16_uc002ver.2_Silent_p.S399S|SPAG16_uc010zjk.1_Silent_p.S359S	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	453	WD 3.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TTGTGGCTTCCTCCTCACTGG	0.428													53	84					0	0	1	0	0
VWC2L	402117	broad.mit.edu	37	2	215301392	215301392	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215301392G>A	uc002vet.2	+	3	560	c.430G>A	c.(430-432)GAA>AAA	p.E144K	VWC2L_uc010zjl.1_Intron	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	144	VWFC 2.					extracellular region					0						GCCCAGCAATGAAGTTCACTG	0.443													12	47					0	0	1	0	0
VWC2L	402117	broad.mit.edu	37	2	215301468	215301468	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215301468C>T	uc002vet.2	+	3	636	c.506C>T	c.(505-507)CCT>CTT	p.P169L	VWC2L_uc010zjl.1_Intron	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	169	VWFC 2.					extracellular region					0						CAATGTTGTCCTGTCTGCAAA	0.453													14	31					0	0	1	0	0
VWC2L	402117	broad.mit.edu	37	2	215440421	215440421	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215440421G>A	uc002vet.2	+	4	676	c.546G>A	c.(544-546)ACG>ACA	p.T182T	VWC2L_uc010zjl.1_Missense_Mutation_p.R139Q	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	182						extracellular region					0						CAGGAACGACGATAATTCCAG	0.463													33	146					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215802311	215802311	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215802311G>A	uc002vew.2	-	51	7685	c.7465C>T	c.(7465-7467)CAC>TAC	p.H2489Y	ABCA12_uc002vev.2_Missense_Mutation_p.H2171Y|ABCA12_uc010zjn.1_Missense_Mutation_p.H1416Y	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2489	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTCTTCAAGTGAACTTTGACA	0.328													21	64					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215807692	215807692	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215807692C>T	uc002vew.2	-	50	7613	c.7393G>A	c.(7393-7395)GGA>AGA	p.G2465R	ABCA12_uc002vev.2_Missense_Mutation_p.G2147R|ABCA12_uc010zjn.1_Missense_Mutation_p.G1392R	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2465	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TGAAACTTTCCATTCACCATA	0.398													24	50					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215831647	215831647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215831647G>A	uc002vew.2	-	39	6029	c.5809C>T	c.(5809-5811)CTT>TTT	p.L1937F	ABCA12_uc002vev.2_Missense_Mutation_p.L1619F|ABCA12_uc010zjn.1_Missense_Mutation_p.L864F	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1937					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TAAGCTGGAAGGGAGTGATAG	0.383													32	62					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215833488	215833488	+	Missense_Mutation	SNP	G	A	A	rs144770649	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215833488G>A	uc002vew.2	-	38	5954	c.5734C>T	c.(5734-5736)CGT>TGT	p.R1912C	ABCA12_uc002vev.2_Missense_Mutation_p.R1594C|ABCA12_uc010zjn.1_Missense_Mutation_p.R839C	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1912					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		ATATCAAAACGAAGGTCTTTT	0.338													41	152					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215848384	215848384	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215848384C>T	uc002vew.2	-	29	4589	c.4369G>A	c.(4369-4371)GAG>AAG	p.E1457K	ABCA12_uc002vev.2_Missense_Mutation_p.E1139K|ABCA12_uc010zjn.1_Missense_Mutation_p.E384K	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1457	ABC transporter 1.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTTACTTCCTCGTGGAGCTGC	0.433													16	77					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215852476	215852476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215852476G>A	uc002vew.2	-	27	4091	c.3871C>T	c.(3871-3873)CCT>TCT	p.P1291S	ABCA12_uc002vev.2_Missense_Mutation_p.P973S|ABCA12_uc010zjn.1_Missense_Mutation_p.P218S	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1291					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CAATAGGAAGGAAGAATTGGA	0.423													6	33					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215866333	215866333	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215866333C>T	uc002vew.2	-	21	3032	c.2812G>A	c.(2812-2814)GAA>AAA	p.E938K	ABCA12_uc002vev.2_Missense_Mutation_p.E620K|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	938					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity	p.E938K(1)		ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTCTCCATTTCATCTATGGTT	0.388													58	159					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215876180	215876180	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215876180C>T	uc002vew.2	-	17	2535	c.2315G>A	c.(2314-2316)GGA>GAA	p.G772E	ABCA12_uc002vev.2_Missense_Mutation_p.G454E|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	772					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TATGGGAATTCCATATTTTGA	0.343													17	39					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215896555	215896555	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215896555G>A	uc002vew.2	-	9	1271	c.1051C>T	c.(1051-1053)CTG>TTG	p.L351L	ABCA12_uc002vev.2_Silent_p.L33L|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	351					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TGTGCAGCCAGACTGCTTGGA	0.328													49	122					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215910690	215910690	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215910690C>T	uc002vew.2	-	7	963	c.743G>A	c.(742-744)AGA>AAA	p.R248K	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	248					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AGACAGCATTCTGACTATTTC	0.373													22	64					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215928826	215928826	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:215928826G>A	uc002vew.2	-	3	500	c.280C>T	c.(280-282)CGT>TGT	p.R94C	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	94					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CCTTTCCTACGAAGCAGATCT	0.433													45	139					0	0	1	0	0
FN1	2335	broad.mit.edu	37	2	216288081	216288081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:216288081G>A	uc002vfa.2	-	9	1651	c.1385C>T	c.(1384-1386)CCC>CTC	p.P462L	FN1_uc002vfb.2_Missense_Mutation_p.P462L|FN1_uc002vfc.2_Missense_Mutation_p.P462L|FN1_uc002vfd.2_Missense_Mutation_p.P462L|FN1_uc002vfe.2_Missense_Mutation_p.P462L|FN1_uc002vff.2_Missense_Mutation_p.P462L|FN1_uc002vfg.2_Missense_Mutation_p.P462L|FN1_uc002vfh.2_Missense_Mutation_p.P462L|FN1_uc002vfi.2_Missense_Mutation_p.P462L|FN1_uc002vfj.2_Missense_Mutation_p.P462L|FN1_uc002vfl.2_Missense_Mutation_p.P462L	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	462	Fibronectin type-II 2.|Collagen-binding.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACCAGCCATGGGGCAGAACCC	0.458													34	54					0	0	1	0	0
FN1	2335	broad.mit.edu	37	2	216296644	216296644	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:216296644G>A	uc002vfa.2	-	4	725	c.459C>T	c.(457-459)ACC>ACT	p.T153T	FN1_uc002vfb.2_Silent_p.T153T|FN1_uc002vfc.2_Silent_p.T153T|FN1_uc002vfd.2_Silent_p.T153T|FN1_uc002vfe.2_Silent_p.T153T|FN1_uc002vff.2_Silent_p.T153T|FN1_uc002vfg.2_Silent_p.T153T|FN1_uc002vfh.2_Silent_p.T153T|FN1_uc002vfi.2_Silent_p.T153T|FN1_uc002vfj.2_Silent_p.T153T|FN1_uc002vfl.2_Silent_p.T153T	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	153	Fibrin- and heparin-binding 1.|Fibronectin type-I 3.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTCTCCTCCAGGTGTCACCAA	0.463													11	179					0	0	1	0	0
MARCH4	57574	broad.mit.edu	37	2	217124258	217124258	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:217124258G>A	uc002vgb.2	-	4	2777	c.1010C>T	c.(1009-1011)TCC>TTC	p.S337F		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	337						Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		GGTGGATGAGGAGGTCCGGGG	0.637													11	29					0	0	1	0	0
MARCH4	57574	broad.mit.edu	37	2	217124264	217124264	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:217124264C>T	uc002vgb.2	-	4	2771	c.1004G>A	c.(1003-1005)CGG>CAG	p.R335Q		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	335						Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		TGAGGAGGTCCGGGGGTTGGT	0.617													10	30					0	0	1	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217279704	217279704	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:217279704C>T	uc002vgc.3	+	3	607	c.277C>T	c.(277-279)CAG>TAG	p.Q93*	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Nonsense_Mutation_p.Q93*|SMARCAL1_uc010fvg.2_Nonsense_Mutation_p.Q93*	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	93					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		CCACAGTTTTCAGGCAAAGGG	0.483									Schimke_Immuno-Osseous_Dysplasia				20	46					0	0	1	0	0
IGFBP2	3485	broad.mit.edu	37	2	217525496	217525496	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:217525496C>T	uc010zjt.1	+	4	788	c.638C>T	c.(637-639)CCA>CTA	p.P213L	IGFBP2_uc010zju.1_Missense_Mutation_p.P148L	NM_000597	NP_000588	P18065	IBP2_HUMAN	insulin-like growth factor binding protein 2,	220					positive regulation of activated T cell proliferation|regulation of cell growth|regulation of insulin-like growth factor receptor signaling pathway	extracellular space	insulin-like growth factor I binding|insulin-like growth factor II binding				0		Renal(323;0.0458)		Epithelial(149;2.9e-06)|all cancers(144;0.000223)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00968)		AAGCTGCGACCACCCCCTGCC	0.627													5	10					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218683158	218683158	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:218683158G>A	uc002vgt.2	-	24	3983	c.3585C>T	c.(3583-3585)TTC>TTT	p.F1195F	TNS1_uc002vgr.2_Silent_p.F1182F|TNS1_uc002vgs.2_Silent_p.F1174F|TNS1_uc010zjv.1_Silent_p.F1174F	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1195						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CCCGCCAGCCGAAGCCAGGAC	0.637													37	66					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218683210	218683210	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:218683210G>A	uc002vgt.2	-	24	3931	c.3533C>T	c.(3532-3534)CCT>CTT	p.P1178L	TNS1_uc002vgr.2_Missense_Mutation_p.P1165L|TNS1_uc002vgs.2_Missense_Mutation_p.P1157L|TNS1_uc010zjv.1_Missense_Mutation_p.P1157L	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1178						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		GCGCGCCTGAGGGCTCCCAGG	0.642													31	53					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218700808	218700808	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:218700808G>A	uc002vgt.2	-	18	3157	c.2759C>T	c.(2758-2760)TCC>TTC	p.S920F	TNS1_uc002vgr.2_Missense_Mutation_p.S920F|TNS1_uc002vgs.2_Missense_Mutation_p.S920F|TNS1_uc010zjv.1_Missense_Mutation_p.S920F	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	920						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CTGGACAGGGGAGCGAACCCC	0.622													37	66					0	0	1	0	0
CXCR2P1	3580	broad.mit.edu	37	2	218925373	218925373	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:218925373G>A	uc002vgx.2	-	1	641	c.348C>T	c.(346-348)TCC>TCT	p.S116S	RUFY4_uc002vgw.2_Intron	NR_002712				Homo sapiens interleukin 8 receptor, beta pseudogene, mRNA (cDNA clone IMAGE:5450999), with apparent retained intron.												0						AGGAAAATGAGGACAACAGCA	0.547													8	75					0	0	1	0	0
RUFY4	285180	broad.mit.edu	37	2	218940025	218940025	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:218940025G>A	uc002vgw.2	+	10	2135	c.291G>A	c.(289-291)GGG>GGA	p.G97G	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Silent_p.G97G	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	270							metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		AGCCAGAAGGGAAGGAGCTTC	0.547													4	12					0	0	1	0	0
RUFY4	285180	broad.mit.edu	37	2	218940147	218940147	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:218940147G>A	uc002vgw.2	+	10	2257	c.413G>A	c.(412-414)GGG>GAG	p.G138E	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Missense_Mutation_p.G138E	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	311							metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GAGGTGATAGGGATGGAGGCT	0.572													6	19					0	0	1	0	0
RUFY4	285180	broad.mit.edu	37	2	218940349	218940349	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:218940349G>A	uc002vgw.2	+	10	2459	c.615G>A	c.(613-615)CAG>CAA	p.Q205Q	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Silent_p.Q205Q	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	378							metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GGGTCCTTCAGGGACACGCAA	0.617													23	38					0	0	1	0	0
CXCR2	3579	broad.mit.edu	37	2	219000422	219000422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219000422G>A	uc002vgz.1	+	4	1123	c.898G>A	c.(898-900)GAG>AAG	p.E300K	CXCR2_uc002vha.1_Missense_Mutation_p.E300K|CXCR2_uc002vhb.1_Missense_Mutation_p.E300K	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	300	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						GGATGCCACCGAGATTCTGGG	0.567													31	104					0	0	1	0	0
C2orf62	375307	broad.mit.edu	37	2	219232205	219232205	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219232205G>A	uc002vhr.2	+	9	914	c.885G>A	c.(883-885)GAG>GAA	p.E295E	C2orf62_uc002vhs.2_RNA|uc002vht.2_Intron	NM_198559	NP_940961	Q7Z7H3	CB062_HUMAN	hypothetical protein LOC375307	295											0		Renal(207;0.0915)		Epithelial(149;8.08e-07)|all cancers(144;0.000146)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TATGGGAGGAGGATATGGAGC	0.567													39	93					0	0	1	0	0
SLC11A1	6556	broad.mit.edu	37	2	219249050	219249050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219249050G>A	uc002vhv.2	+	3	575	c.235G>A	c.(235-237)GAG>AAG	p.E79K	SLC11A1_uc010zkb.1_Missense_Mutation_p.E79K|SLC11A1_uc010fvp.1_Missense_Mutation_p.E79K|SLC11A1_uc010fvq.1_Missense_Mutation_p.E12K|SLC11A1_uc010zkc.1_Missense_Mutation_p.E12K|SLC11A1_uc002vhu.1_Intron|SLC11A1_uc002vhw.2_5'UTR|SLC11A1_uc010fvr.2_5'Flank	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	79	Pro/Ser-rich.|Extracellular (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGAAACATCGAGTCAGATCT	0.587													48	140					0	0	1	0	0
SLC11A1	6556	broad.mit.edu	37	2	219249889	219249890	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219249889_219249890GG>AA	uc002vhv.2	+	4	633_634	c.293_294GG>AA	c.(292-294)TGG>TAA	p.W98*	SLC11A1_uc010zkb.1_Nonsense_Mutation_p.W98*|SLC11A1_uc010fvp.1_Nonsense_Mutation_p.W98*|SLC11A1_uc010fvq.1_Nonsense_Mutation_p.W31*|SLC11A1_uc010zkc.1_Nonsense_Mutation_p.W31*|SLC11A1_uc002vhu.1_5'UTR|SLC11A1_uc002vhw.2_5'UTR|SLC11A1_uc010fvr.2_5'Flank	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	98	Helical; (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTGCTGCTCTGGGCCACCGTGT	0.624													9	91					0	0	1	0	0
SLC11A1	6556	broad.mit.edu	37	2	219254613	219254613	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219254613C>T	uc002vhv.2	+	9	1156	c.816C>T	c.(814-816)GCC>GCT	p.A272A	SLC11A1_uc010fvp.1_Silent_p.A272A|SLC11A1_uc010fvq.1_Silent_p.A205A|SLC11A1_uc010zkc.1_Silent_p.A205A|SLC11A1_uc002vhu.1_Silent_p.A67A|SLC11A1_uc002vhw.2_Silent_p.A154A|SLC11A1_uc010fvr.2_Silent_p.A67A	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	272	Cytoplasmic (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TAGACCGGGCCCGCCGAGCAG	0.537													15	26					0	0	1	0	0
VIL1	7429	broad.mit.edu	37	2	219294035	219294035	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219294035G>A	uc002via.2	+	7	660	c.595G>A	c.(595-597)GAC>AAC	p.D199N	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Missense_Mutation_p.D199N|VIL1_uc002vic.1_Missense_Mutation_p.D199N	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	199	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGAGATCCGAGACCAGGAGCG	0.617													34	76					0	0	1	0	0
VIL1	7429	broad.mit.edu	37	2	219299355	219299356	+	Missense_Mutation	DNP	GG	AA	AA	rs143261714	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219299355_219299356GG>AA	uc002via.2	+	14	1672_1673	c.1607_1608GG>AA	c.(1606-1608)CGG>CAA	p.R536Q	VIL1_uc010zke.1_Missense_Mutation_p.R225Q|VIL1_uc002vib.2_Missense_Mutation_p.R536Q	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	536	Gelsolin-like 5.|Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTCCCAGCGCGGGCCAATTTCC	0.564													31	90					0	0	1	0	0
USP37	57695	broad.mit.edu	37	2	219411757	219411757	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219411757G>A	uc002vie.2	-	7	940	c.487C>T	c.(487-489)CTT>TTT	p.L163F	USP37_uc010fvs.1_Missense_Mutation_p.L163F|USP37_uc010zkf.1_Missense_Mutation_p.L163F|USP37_uc002vif.2_Missense_Mutation_p.L163F|USP37_uc002vig.2_Missense_Mutation_p.L91F|USP37_uc010zkg.1_Missense_Mutation_p.L163F	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	163	D-box 3.			RKVL->AKVA: No effect.	ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		GGATTACCAAGAACTTTTCGA	0.368													30	104					0	0	1	0	0
USP37	57695	broad.mit.edu	37	2	219423367	219423367	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219423367G>A	uc002vie.2	-	4	463	c.10C>T	c.(10-12)CTG>TTG	p.L4L	USP37_uc010fvs.1_Silent_p.L4L|USP37_uc010zkf.1_Silent_p.L4L|USP37_uc002vif.2_Silent_p.L4L|USP37_uc002vig.2_Intron|USP37_uc010zkg.1_Silent_p.L4L	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	4					ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		TGTATCTTCAGAGGAGACATA	0.323													50	113					0	0	1	0	0
PLCD4	84812	broad.mit.edu	37	2	219483369	219483369	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219483369G>A	uc002vij.1	+	4	444	c.249G>A	c.(247-249)GAG>GAA	p.E83E	PLCD4_uc010zkj.1_Silent_p.E30E|PLCD4_uc002vik.1_5'Flank|PLCD4_uc010zkk.1_5'Flank	NM_032726	NP_116115	Q9BRC7	PLCD4_HUMAN	phospholipase C, delta 4	83	PH.				intracellular signal transduction|lipid catabolic process	endoplasmic reticulum|membrane|nucleus	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)	3		Renal(207;0.0915)		Epithelial(149;5.11e-07)|all cancers(144;0.000104)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GCCTGGCAGAGGAGCTCCCCC	0.557													18	38					0	0	1	0	0
PLCD4	84812	broad.mit.edu	37	2	219492822	219492822	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219492822C>T	uc002vij.1	+	7	1038	c.843C>T	c.(841-843)TTC>TTT	p.F281F	PLCD4_uc002vik.1_Silent_p.F128F|PLCD4_uc010zkk.1_Intron	NM_032726	NP_116115	Q9BRC7	PLCD4_HUMAN	phospholipase C, delta 4	281					intracellular signal transduction|lipid catabolic process	endoplasmic reticulum|membrane|nucleus	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)	3		Renal(207;0.0915)		Epithelial(149;5.11e-07)|all cancers(144;0.000104)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GAGACATCTTCAACCCAGCCT	0.522													25	78					0	0	1	0	0
PLCD4	84812	broad.mit.edu	37	2	219499293	219499293	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219499293G>A	uc002vij.1	+	13	2031	c.1836G>A	c.(1834-1836)CAG>CAA	p.Q612Q		NM_032726	NP_116115	Q9BRC7	PLCD4_HUMAN	phospholipase C, delta 4	612					intracellular signal transduction|lipid catabolic process	endoplasmic reticulum|membrane|nucleus	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)	3		Renal(207;0.0915)		Epithelial(149;5.11e-07)|all cancers(144;0.000104)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GTGATATCCAGAGTTCTTTCC	0.498													72	190					0	0	1	0	0
ZNF142	7701	broad.mit.edu	37	2	219521016	219521016	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219521016G>A	uc002vin.2	-	4	573	c.137C>T	c.(136-138)TCC>TTC	p.S46F	ZNF142_uc002vil.2_5'UTR|ZNF142_uc010fvt.2_5'UTR|ZNF142_uc002vim.2_5'UTR|BCS1L_uc002vio.2_5'Flank	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	46					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		AGGGTCCCGGGAAGGACAGGG	0.602													35	60					0	0	1	0	0
STK36	27148	broad.mit.edu	37	2	219538350	219538350	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219538350C>T	uc002viu.2	+	3	353	c.87C>T	c.(85-87)GTC>GTT	p.V29V	STK36_uc002viv.2_Silent_p.V29V|RNF25_uc002vit.2_5'Flank|RNF25_uc010fvw.2_5'Flank	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	29	Protein kinase.				cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		ACTGACAGGTCGTGGCCCTGA	0.458													9	45					0	0	1	0	0
STK36	27148	broad.mit.edu	37	2	219553448	219553448	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219553448C>T	uc002viu.2	+	12	1675	c.1409C>T	c.(1408-1410)TCC>TTC	p.S470F	STK36_uc002viv.2_Missense_Mutation_p.S470F	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	470					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		GAGGGTGCTTCCCACATCCTG	0.517													88	204					0	0	1	0	0
CYP27A1	1593	broad.mit.edu	37	2	219679167	219679167	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219679167C>T	uc002viz.3	+	7	1683	c.1249C>T	c.(1249-1251)CTC>TTC	p.L417F		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	417					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	TGATGGCTTCCTCTTCCCCAA	0.522													40	94					0	0	1	0	0
WNT6	7475	broad.mit.edu	37	2	219736279	219736279	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219736279C>T	uc002vjc.1	+	3	589	c.374C>T	c.(373-375)TCT>TTT	p.S125F		NM_006522	NP_006513	Q9Y6F9	WNT6_HUMAN	wingless-type MMTV integration site family,	125					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|cornea development in camera-type eye|neuron differentiation|odontogenesis of dentine-containing tooth|positive regulation of gene expression|positive regulation of tooth mineralization|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(2)|skin(1)	3		Renal(207;0.0474)		Epithelial(149;4.53e-07)|all cancers(144;9.3e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CAGGCCTGTTCTATGGGCGAG	0.423													9	21					0	0	1	0	0
WNT6	7475	broad.mit.edu	37	2	219738374	219738374	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219738374C>T	uc002vjc.1	+	4	1120	c.905C>T	c.(904-906)TCC>TTC	p.S302F		NM_006522	NP_006513	Q9Y6F9	WNT6_HUMAN	wingless-type MMTV integration site family,	302					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|cornea development in camera-type eye|neuron differentiation|odontogenesis of dentine-containing tooth|positive regulation of gene expression|positive regulation of tooth mineralization|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(2)|skin(1)	3		Renal(207;0.0474)		Epithelial(149;4.53e-07)|all cancers(144;9.3e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGCACCGGCTCCCCCGGCACG	0.761													9	18					0	0	1	0	0
WNT10A	80326	broad.mit.edu	37	2	219754737	219754737	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219754737C>T	uc002vjd.1	+	3	871	c.408C>T	c.(406-408)ATC>ATT	p.I136I		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	136					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTACGCCATCGCAGCAGCTG	0.498													12	88					0	0	1	0	0
CRYBA2	1412	broad.mit.edu	37	2	219856910	219856910	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219856910C>T	uc002vjj.1	-	3	252	c.217G>A	c.(217-219)GGA>AGA	p.G73R	CRYBA2_uc002vjk.1_Missense_Mutation_p.G73R	NM_057094	NP_476435	P53672	CRBA2_HUMAN	crystallin, beta A2	73	Beta/gamma crystallin 'Greek key' 2.						structural constituent of eye lens				0		Renal(207;0.0474)		Epithelial(149;9.77e-07)|all cancers(144;0.000167)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGATAGTCTCCCTTCTCCAGA	0.617													18	38					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219868840	219868840	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219868840C>T	uc002vjl.1	-	33	5473	c.5389G>A	c.(5389-5391)GAG>AAG	p.E1797K	uc010fvz.1_5'Flank|MIR375_hsa-mir-375|MI0000783_5'Flank	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1797	Glu-rich.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		tcctccttctcctctatctcc	0.214													11	100					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219874711	219874711	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219874711C>T	uc002vjl.1	-	27	4489	c.4405G>A	c.(4405-4407)GAG>AAG	p.E1469K		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1469						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCAATTTCCTCGTTCTTGGAG	0.532													11	48					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219875364	219875364	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219875364G>A	uc002vjl.1	-	26	4296	c.4212C>T	c.(4210-4212)GGC>GGT	p.G1404G		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1404						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGGGTTGTAGCCCACTCCCT	0.592													7	14					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219883777	219883777	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219883777C>T	uc002vjl.1	-	21	3682	c.3598G>A	c.(3598-3600)GAC>AAC	p.D1200N	CCDC108_uc002vjm.3_Missense_Mutation_p.D85N	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1200						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCATACCAGTCCAGGGACACC	0.602													15	188					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219884425	219884425	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219884425C>T	uc002vjl.1	-	20	3360	c.3276G>A	c.(3274-3276)GAG>GAA	p.E1092E	CCDC108_uc002vjm.3_5'UTR	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1092						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCTCCTGCTTCTCCCCAGCCT	0.622													6	27					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219888004	219888004	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219888004C>T	uc002vjl.1	-	16	2829	c.2745G>A	c.(2743-2745)TGG>TGA	p.W915*		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	915	MSP.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CAGAGACCCTCCACTCGAACT	0.632													5	20					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219894230	219894230	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219894230G>A	uc002vjl.1	-	11	1629	c.1545C>T	c.(1543-1545)GCC>GCT	p.A515A	CCDC108_uc010fwa.1_5'UTR|CCDC108_uc010zkp.1_Silent_p.A504A|CCDC108_uc010zkq.1_Silent_p.A450A	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	515						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCGTCCCAAAGGCAGGCCTGA	0.602											OREG0015211	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	32					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219896315	219896315	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219896315G>A	uc002vjl.1	-	7	795	c.711C>T	c.(709-711)GCC>GCT	p.A237A	CCDC108_uc010fwa.1_5'Flank|CCDC108_uc010zkp.1_Silent_p.A226A|CCDC108_uc010zkq.1_Silent_p.A172A	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	237						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGGCAGGGTGGCCCGTAGGC	0.607													33	121					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219903697	219903697	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219903697G>A	uc002vjl.1	-	3	158	c.74C>T	c.(73-75)TCT>TTT	p.S25F	CCDC108_uc010zkp.1_Intron|CCDC108_uc010zkq.1_Intron|CCDC108_uc002vjn.2_Intron	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	25						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGGAAAGAAGAGGCAAATGA	0.408													35	77					0	0	1	0	0
IHH	3549	broad.mit.edu	37	2	219920427	219920427	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:219920427G>A	uc002vjo.1	-	3	738	c.738C>T	c.(736-738)TTC>TTT	p.F246F		NM_002181	NP_002172	Q14623	IHH_HUMAN	Indian hedgehog homolog precursor	246				F -> L (in Ref. 1; BAA33523).	cell-cell signaling|intein-mediated protein splicing|proteolysis	extracellular space|plasma membrane	cholesterol binding|patched binding|peptidase activity			breast(1)	1		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000188)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGCGGTCCAGGAAAATGAGCA	0.657													23	57					0	0	1	0	0
C2orf24	27013	broad.mit.edu	37	2	220037701	220037701	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220037701G>A	uc002vju.3	-	8	992	c.840C>T	c.(838-840)CCC>CCT	p.P280P	NHEJ1_uc002vjq.3_5'Flank|SLC23A3_uc010zkr.1_5'Flank|SLC23A3_uc010zks.1_5'Flank|SLC23A3_uc010fwb.2_5'Flank|C2orf24_uc002vjv.2_Silent_p.P280P	NM_015680	NP_056495	Q9BV87	CNPD1_HUMAN	hypothetical protein LOC27013	280					regulation of cyclin-dependent protein kinase activity	integral to membrane	protein kinase binding				0		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AAGGTATGCAGGGCTCCAGGA	0.612													11	136					0	0	1	0	0
FAM134A	79137	broad.mit.edu	37	2	220047103	220047103	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220047103C>T	uc002vjw.3	+	9	1520	c.1384C>T	c.(1384-1386)CCC>TCC	p.P462S	FAM134A_uc010fwc.2_Missense_Mutation_p.P255S|FAM134A_uc002vjx.2_Intron	NM_024293	NP_077269	Q8NC44	F134A_HUMAN	hypothetical protein LOC79137	462						endoplasmic reticulum|integral to membrane				ovary(1)|central_nervous_system(1)	2		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGACCCAGCCCCCTCCCCTTC	0.617													69	145					0	0	1	0	0
ANKZF1	55139	broad.mit.edu	37	2	220097337	220097337	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220097337C>T	uc002vkg.2	+	5	664	c.490C>T	c.(490-492)CGA>TGA	p.R164*	ATG9A_uc002vke.1_5'Flank|ATG9A_uc002vkf.1_5'Flank|ANKZF1_uc010zkv.1_Nonsense_Mutation_p.R108*|ANKZF1_uc010zkw.1_5'UTR|ANKZF1_uc002vkh.2_5'UTR|ANKZF1_uc002vki.2_Nonsense_Mutation_p.R164*|ANKZF1_uc002vkj.1_Nonsense_Mutation_p.R152*	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	164						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TTACCCTCATCGAGTTCTTTT	0.537													35	90					0	0	1	0	0
ANKZF1	55139	broad.mit.edu	37	2	220099597	220099597	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220099597G>A	uc002vkg.2	+	10	1428	c.1254G>A	c.(1252-1254)GTG>GTA	p.V418V	ANKZF1_uc010zkv.1_3'UTR|ANKZF1_uc010zkw.1_3'UTR|ANKZF1_uc002vkh.2_Silent_p.V208V|ANKZF1_uc002vki.2_Silent_p.V418V|ANKZF1_uc002vkj.1_3'UTR	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	418						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGAGCTAGTGGAGTTGACTG	0.498													17	64					0	0	1	0	0
GLB1L	79411	broad.mit.edu	37	2	220104315	220104315	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220104315C>T	uc002vkm.2	-	9	1109	c.870G>A	c.(868-870)GAG>GAA	p.E290E	GLB1L_uc002vkk.2_Silent_p.E47E|GLB1L_uc010zkx.1_Silent_p.E200E|GLB1L_uc002vkn.2_Silent_p.E290E	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	290					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGAGCATGTTCTCTAGTCCTT	0.478													73	168					0	0	1	0	0
GLB1L	79411	broad.mit.edu	37	2	220107272	220107272	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220107272G>A	uc002vkm.2	-	5	654	c.415C>T	c.(415-417)CGA>TGA	p.R139*	GLB1L_uc002vkk.2_5'Flank|GLB1L_uc010zkx.1_Nonsense_Mutation_p.R139*|GLB1L_uc002vkn.2_Nonsense_Mutation_p.R139*|STK16_uc002vko.2_5'Flank|STK16_uc002vks.2_5'Flank|STK16_uc010zky.1_5'Flank|STK16_uc010fwf.2_5'Flank|STK16_uc002vkp.2_5'Flank	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	139					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCAGGTTTTCGAAGCAACCAG	0.443													48	105					0	0	1	0	0
GLB1L	79411	broad.mit.edu	37	2	220108019	220108019	+	Silent	SNP	G	A	A	rs13388808		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220108019G>A	uc002vkm.2	-	3	329	c.90C>T	c.(88-90)TTC>TTT	p.F30F	GLB1L_uc010zkx.1_Silent_p.F30F|GLB1L_uc002vkn.2_Silent_p.F30F|STK16_uc002vko.2_5'Flank|STK16_uc002vks.2_5'Flank|STK16_uc010zky.1_5'Flank|STK16_uc010fwf.2_5'Flank|STK16_uc002vkp.2_5'Flank|STK16_uc002vkr.2_5'Flank|STK16_uc002vkq.2_5'Flank	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	30					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TATCCACTACGAACGACCGAG	0.602													32	75					0	0	1	0	0
TUBA4A	7277	broad.mit.edu	37	2	220116411	220116411	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220116411C>T	uc002vkt.1	-	3	309	c.251G>A	c.(250-252)CGA>CAA	p.R84Q	TUBA4A_uc010zkz.1_Missense_Mutation_p.R69Q|TUBA4B_uc002vku.2_5'Flank|TUBA4B_uc002vkv.1_5'Flank	NM_006000	NP_005991	P68366	TBA4A_HUMAN	tubulin, alpha 4a	84					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|platelet activation|platelet degranulation|protein polymerization	cytosol|extracellular region|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)	3		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAAGAGCTGTCGGTATGGGCC	0.542													27	39					0	0	1	0	0
TUBA4B	80086	broad.mit.edu	37	2	220136346	220136346	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220136346G>A	uc002vkv.1	+	4	816	c.651G>A	c.(649-651)CAG>CAA	p.Q217Q	TUBA4B_uc002vku.2_RNA	NR_003063				RecName: Full=Putative tubulin-like protein alpha-4B; AltName: Full=Alpha-tubulin 4B;												0						CATCTCTGCAGAAAAGGTATA	0.557													15	83					0	0	1	0	0
PTPRN	5798	broad.mit.edu	37	2	220156210	220156210	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220156210G>A	uc002vkz.2	-	20	2800	c.2711C>T	c.(2710-2712)CCC>CTC	p.P904L	PTPRN_uc010zlc.1_Missense_Mutation_p.P814L|PTPRN_uc002vla.2_Missense_Mutation_p.P875L	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	904	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		CACGATGATGGGGCAGGAGCG	0.592													14	39					0	0	1	0	0
PTPRN	5798	broad.mit.edu	37	2	220161176	220161176	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220161176G>A	uc002vkz.2	-	17	2462	c.2373C>T	c.(2371-2373)ATC>ATT	p.I791I	PTPRN_uc010zlc.1_Silent_p.I701I|PTPRN_uc002vla.2_Silent_p.I762I|uc010zld.1_5'Flank|MIR153-1_hsa-mir-153-1|MI0000463_5'Flank	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	791	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		AGAAGTCTGCGATGGTATGGG	0.602													31	78					0	0	1	0	0
PTPRN	5798	broad.mit.edu	37	2	220166353	220166353	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220166353C>T	uc002vkz.2	-	7	1172	c.1083G>A	c.(1081-1083)CTG>CTA	p.L361L	PTPRN_uc010zlc.1_Silent_p.L271L|PTPRN_uc002vla.2_Silent_p.L361L	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	361	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GCAGCAGGGTCAGGAGTGTGG	0.637													36	78					0	0	1	0	0
PTPRN	5798	broad.mit.edu	37	2	220167069	220167069	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220167069C>T	uc002vkz.2	-	6	873	c.784G>A	c.(784-786)GGG>AGG	p.G262R	PTPRN_uc010zlc.1_Missense_Mutation_p.G172R|PTPRN_uc002vla.2_Missense_Mutation_p.G262R	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	262	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GGAAGGTCCCCGTAGGAGTGG	0.632													9	18					0	0	1	0	0
PTPRN	5798	broad.mit.edu	37	2	220168485	220168485	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220168485G>A	uc002vkz.2	-	4	438	c.349C>T	c.(349-351)CGC>TGC	p.R117C	PTPRN_uc010zlc.1_Missense_Mutation_p.R27C|PTPRN_uc002vla.2_Missense_Mutation_p.R117C	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	117	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		TCTGGGGGGCGAAGCCTGGGG	0.542													12	36					0	0	1	0	0
DNPEP	23549	broad.mit.edu	37	2	220239650	220239650	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220239650G>A	uc010zlg.1	-	14	1440	c.1358C>T	c.(1357-1359)CCC>CTC	p.P453L	DNPEP_uc010zlf.1_RNA|DNPEP_uc002vle.2_Missense_Mutation_p.P445L|DNPEP_uc002vlf.1_Missense_Mutation_p.P431L|DNPEP_uc002vlh.2_Missense_Mutation_p.P392L|DNPEP_uc002vli.1_Missense_Mutation_p.P392L	NM_012100	NP_036232	Q9ULA0	DNPEP_HUMAN	aspartyl aminopeptidase	435					peptide metabolic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;1.09e-06)|all cancers(144;0.000179)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)	L-Glutamic Acid(DB00142)	GGCCAGTTGGGGGCTGCCTAA	0.607													20	54					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220312757	220312757	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220312757G>A	uc010fwg.2	+	4	877	c.877G>A	c.(877-879)GAA>AAA	p.E293K	SPEG_uc002vlm.2_RNA|SPEG_uc010fwh.1_5'UTR|SPEG_uc002vln.1_5'UTR|SPEG_uc002vlp.1_5'Flank	NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	293	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		ACTGGCCAGCGAAGCCCCACG	0.706													8	27					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220326713	220326713	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220326713G>A	uc010fwg.2	+	7	2550	c.2550G>A	c.(2548-2550)ATG>ATA	p.M850I	SPEG_uc002vlm.2_RNA|SPEG_uc010fwh.1_Missense_Mutation_p.M58I|SPEG_uc002vln.1_Missense_Mutation_p.M58I|SPEG_uc002vlp.1_Missense_Mutation_p.M58I|SPEG_uc002vlq.2_Missense_Mutation_p.M1I	NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	850					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CCCCCACCATGAAGCCCAGTC	0.647													40	100					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220333389	220333389	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220333389G>A	uc010fwg.2	+	11	3232	c.3232G>A	c.(3232-3234)GGC>AGC	p.G1078S		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1078	Ig-like 5.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GGTGTTGGAGGGCCGAGCTGC	0.637													31	53					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220337666	220337666	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220337666G>A	uc010fwg.2	+	16	3995	c.3995G>A	c.(3994-3996)TGG>TAG	p.W1332*		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1332	Fibronectin type-III 1.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TCGGACCAGTGGACGGCACTG	0.647													20	49					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220348138	220348138	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220348138G>A	uc010fwg.2	+	30	5953	c.5953G>A	c.(5953-5955)GAG>AAG	p.E1985K		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1985					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TCAGGACCAGGAGGCTCCCAG	0.711													4	8					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220348866	220348866	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220348866G>A	uc010fwg.2	+	30	6681	c.6681G>A	c.(6679-6681)AAG>AAA	p.K2227K		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2227	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GAGCCTCCAAGCCTGCACCAC	0.667													13	54					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220348929	220348929	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220348929C>T	uc010fwg.2	+	30	6744	c.6744C>T	c.(6742-6744)ATC>ATT	p.I2248I		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2248	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		ATGCTCAGATCATTCAGTCCC	0.687													32	47					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220353814	220353814	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220353814G>A	uc010fwg.2	+	35	8188	c.8188G>A	c.(8188-8190)GAC>AAC	p.D2730N		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2730	Fibronectin type-III 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		AGGCATCCCCGACTGTTACTA	0.632													43	71					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220355492	220355492	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220355492G>A	uc010fwg.2	+	38	9199	c.9199G>A	c.(9199-9201)GTG>ATG	p.V3067M		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	3067	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CACTTACATGGTGCAGCTGCT	0.602													26	79					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220356557	220356557	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220356557G>A	uc010fwg.2	+	39	9427	c.9427G>A	c.(9427-9429)GAC>AAC	p.D3143N		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	3143	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CTCTGCCACGGACATCTGGGG	0.622													10	27					0	0	1	0	0
ACCN4	55515	broad.mit.edu	37	2	220396532	220396532	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220396532C>T	uc002vma.2	+	2	1030	c.1016C>T	c.(1015-1017)TCG>TTG	p.S339L	ACCN4_uc010fwi.1_Missense_Mutation_p.S339L|ACCN4_uc010fwj.1_Missense_Mutation_p.S339L|ACCN4_uc002vly.1_Missense_Mutation_p.S339L|ACCN4_uc002vlz.2_Missense_Mutation_p.S339L|ACCN4_uc002vmb.2_5'UTR	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	339	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		CCGCGGAGCTCGCTGCCCAGC	0.622													24	125					0	0	1	0	0
TMEM198	130612	broad.mit.edu	37	2	220412343	220412343	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220412343G>A	uc002vme.2	+	4	867	c.282G>A	c.(280-282)GCG>GCA	p.A94A	TMEM198_uc002vmf.2_Silent_p.A94A	NM_001005209	NP_001005209	Q66K66	TM198_HUMAN	transmembrane protein 198	94	Helical; (Potential).|Leu-rich.					integral to membrane				ovary(1)	1		Renal(207;0.0376)		Epithelial(149;6.49e-08)|all cancers(144;6.45e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		GTGCTGGGGCGAGCGCGGGCA	0.657													93	165					0	0	1	0	0
TMEM198	130612	broad.mit.edu	37	2	220413939	220413939	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220413939G>A	uc002vme.2	+	5	1393	c.808G>A	c.(808-810)GAG>AAG	p.E270K	TMEM198_uc002vmf.2_Missense_Mutation_p.E270K|hsa-mir-3132|MI0014152_5'Flank	NM_001005209	NP_001005209	Q66K66	TM198_HUMAN	transmembrane protein 198	270	Arg-rich.					integral to membrane				ovary(1)	1		Renal(207;0.0376)		Epithelial(149;6.49e-08)|all cancers(144;6.45e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		AGATCGCAAGGAGAAAAGGCG	0.637													14	177					0	0	1	0	0
STK11IP	114790	broad.mit.edu	37	2	220466101	220466102	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220466101_220466102CC>TT	uc002vml.2	+	3	282_283	c.239_240CC>TT	c.(238-240)TCC>TTT	p.S80F	STK11IP_uc010zlj.1_Missense_Mutation_p.S69F|STK11IP_uc010zlk.1_Missense_Mutation_p.S69F|STK11IP_uc010zll.1_Missense_Mutation_p.S69F|STK11IP_uc002vmm.1_Missense_Mutation_p.S69F	NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	80					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTGCCGACTCCCCTGTTATTC	0.569													16	50					0	0	1	0	0
STK11IP	114790	broad.mit.edu	37	2	220472776	220472776	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220472776C>T	uc002vml.2	+	14	1303	c.1260C>T	c.(1258-1260)TTC>TTT	p.F420F	STK11IP_uc010zll.1_Silent_p.F377F|STK11IP_uc002vmm.1_Silent_p.F409F	NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	420					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TAGGATGGTTCGTGCAGCAGC	0.627													24	30					0	0	1	0	0
STK11IP	114790	broad.mit.edu	37	2	220479908	220479908	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220479908C>T	uc002vml.2	+	24	3038	c.2995C>T	c.(2995-2997)CCT>TCT	p.P999S		NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	999					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGAGCCCTCTCCTCCAGCAGC	0.657													8	16					0	0	1	0	0
STK11IP	114790	broad.mit.edu	37	2	220480833	220480833	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220480833C>T	uc002vml.2	+	25	3261	c.3218C>T	c.(3217-3219)GCC>GTC	p.A1073V		NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	1073					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCCCTGCTTGCCTGGATCCGG	0.622													5	24					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220494887	220494887	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220494887C>T	uc002vmp.3	+	6	893	c.624C>T	c.(622-624)CCC>CCT	p.P208P	SLC4A3_uc002vmn.2_Silent_p.P235P|SLC4A3_uc002vmo.3_Silent_p.P235P|SLC4A3_uc010fwm.2_5'UTR|SLC4A3_uc010fwn.1_5'Flank	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	208	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCCCAGCCCCCGGGCCCGGG	0.692													3	15					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220496784	220496784	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220496784C>T	uc002vmp.3	+	7	1175	c.906C>T	c.(904-906)GCC>GCT	p.A302A	SLC4A3_uc002vmn.2_Silent_p.A329A|SLC4A3_uc002vmo.3_Silent_p.A329A|SLC4A3_uc010fwm.2_5'UTR|SLC4A3_uc010fwn.1_5'UTR	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	302	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCGGCCTGGCCCCCATCCTTC	0.637													18	52					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220500079	220500079	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220500079C>T	uc002vmp.3	+	13	2102	c.1833C>T	c.(1831-1833)ATC>ATT	p.I611I	SLC4A3_uc002vmo.3_Silent_p.I638I|SLC4A3_uc010fwm.2_Silent_p.I161I|SLC4A3_uc010fwn.1_Silent_p.I120I	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	611	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCATTGTGATCCCCCCGTCCG	0.612													25	60					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220501453	220501453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220501453C>T	uc002vmp.3	+	16	2661	c.2392C>T	c.(2392-2394)CTC>TTC	p.L798F	SLC4A3_uc002vmo.3_Missense_Mutation_p.L825F|SLC4A3_uc010fwm.2_Missense_Mutation_p.L348F|SLC4A3_uc010fwn.1_Missense_Mutation_p.L307F	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	798	Helical; (Potential).|Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTGGGTTGGTCTCTGGCTGGT	0.622													38	87					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220503474	220503474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220503474C>T	uc002vmp.3	+	19	3175	c.2906C>T	c.(2905-2907)TCG>TTG	p.S969L	SLC4A3_uc002vmo.3_Missense_Mutation_p.S996L|SLC4A3_uc010fwm.2_Missense_Mutation_p.S519L	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	969	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GATAAGCGCTCGTGGTTCATC	0.602													18	53					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220504278	220504278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:220504278C>T	uc002vmp.3	+	20	3367	c.3098C>T	c.(3097-3099)TCC>TTC	p.S1033F	SLC4A3_uc002vmo.3_Missense_Mutation_p.S1060F|SLC4A3_uc010fwm.2_Missense_Mutation_p.S583F	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	1033	Helical; (Potential).|Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTCATTGGCTCCCTGGGGGGG	0.652													31	81					0	0	1	0	0
EPHA4	2043	broad.mit.edu	37	2	222294837	222294837	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:222294837G>A	uc002vmq.2	-	15	2573	c.2531C>T	c.(2530-2532)CCC>CTC	p.P844L	EPHA4_uc002vmr.2_Missense_Mutation_p.P844L|EPHA4_uc010zlm.1_Missense_Mutation_p.P785L|EPHA4_uc010zln.1_Missense_Mutation_p.P844L	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	844	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CATTGGAGGGGGTAACCGATA	0.522													28	81					0	0	1	0	0
EPHA4	2043	broad.mit.edu	37	2	222307703	222307703	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:222307703G>A	uc002vmq.2	-	11	1962	c.1920C>T	c.(1918-1920)CTC>CTT	p.L640L	EPHA4_uc002vmr.2_Silent_p.L640L|EPHA4_uc010zlm.1_Silent_p.L581L|EPHA4_uc010zln.1_Silent_p.L640L	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	640	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CAGGCACTTTGAGACGCCCAC	0.423													42	104					0	0	1	0	0
EPHA4	2043	broad.mit.edu	37	2	222429004	222429004	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:222429004G>A	uc002vmq.2	-	3	312	c.270C>T	c.(268-270)ACC>ACT	p.T90T	EPHA4_uc002vmr.2_Silent_p.T90T|EPHA4_uc010zlm.1_Silent_p.T31T|EPHA4_uc010zln.1_Silent_p.T90T	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	90	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CCCCTTCTCGGGTGATCCAAT	0.468													14	171					0	0	1	0	0
SGPP2	130367	broad.mit.edu	37	2	223386575	223386575	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:223386575G>A	uc010zlo.1	+	3	468	c.468G>A	c.(466-468)CTG>CTA	p.L156L	SGPP2_uc010zlp.1_Silent_p.L28L	NM_152386	NP_689599	Q8IWX5	SGPP2_HUMAN	sphingosine-1-phosphate phosphotase 2	156					sphingosine metabolic process	endoplasmic reticulum membrane|integral to membrane	dihydrosphingosine-1-phosphate phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)|skin(1)	2		Renal(207;0.0376)		Epithelial(121;2.08e-09)|all cancers(144;9.25e-07)|LUSC - Lung squamous cell carcinoma(224;0.011)|Lung(261;0.0143)		AAAAGAGACTGATCGCTGAAT	0.522													29	84					0	0	1	0	0
SGPP2	130367	broad.mit.edu	37	2	223423135	223423135	+	Missense_Mutation	SNP	G	A	A	rs141548793	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:223423135G>A	uc010zlo.1	+	5	718	c.718G>A	c.(718-720)GAC>AAC	p.D240N	SGPP2_uc010zlp.1_Missense_Mutation_p.D112N	NM_152386	NP_689599	Q8IWX5	SGPP2_HUMAN	sphingosine-1-phosphate phosphotase 2	240					sphingosine metabolic process	endoplasmic reticulum membrane|integral to membrane	dihydrosphingosine-1-phosphate phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)|skin(1)	2		Renal(207;0.0376)		Epithelial(121;2.08e-09)|all cancers(144;9.25e-07)|LUSC - Lung squamous cell carcinoma(224;0.011)|Lung(261;0.0143)		GACCTTCATCGACTGCCTGGA	0.537													48	131					0	0	1	0	0
MOGAT1	116255	broad.mit.edu	37	2	223559950	223559950	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:223559950G>A	uc010fws.1	+	5	844	c.796G>A	c.(796-798)GGA>AGA	p.G266R	MOGAT1_uc010fwt.1_Missense_Mutation_p.G226R	NM_058165	NP_477513	Q96PD6	MOGT1_HUMAN	monoacylglycerol O-acyltransferase 1	266					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			breast(1)	1		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;2.06e-07)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0105)		TCATGCCAGGGGAGTTTTTCA	0.388													5	27					0	0	1	0	0
ACSL3	2181	broad.mit.edu	37	2	223795394	223795394	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:223795394C>T	uc002vni.2	+	14	2047	c.1596C>T	c.(1594-1596)GGC>GGT	p.G532G	ACSL3_uc002vnj.2_Silent_p.G532G	NM_004457	NP_004448	O95573	ACSL3_HUMAN	acyl-CoA synthetase long-chain family member 3	532	Cytoplasmic (Potential).				long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|fatty-acyl-CoA synthase activity|long-chain fatty acid-CoA ligase activity|protein binding			ovary(2)	2		Renal(207;0.0183)		Epithelial(121;1.28e-10)|all cancers(144;8.06e-08)|Lung(261;0.00834)|LUSC - Lung squamous cell carcinoma(224;0.00864)	Icosapent(DB00159)	TTATTGGGGGCCAAAGTGTGA	0.363			T	ETV1	prostate								18	31					0	0	1	0	0
ACSL3	2181	broad.mit.edu	37	2	223806250	223806250	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:223806250C>T	uc002vni.2	+	17	2492	c.2041C>T	c.(2041-2043)CGT>TGT	p.R681C	ACSL3_uc002vnj.2_Missense_Mutation_p.R681C|ACSL3_uc002vnk.2_5'Flank	NM_004457	NP_004448	O95573	ACSL3_HUMAN	acyl-CoA synthetase long-chain family member 3	681	Cytoplasmic (Potential).				long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|fatty-acyl-CoA synthase activity|long-chain fatty acid-CoA ligase activity|protein binding			ovary(2)	2		Renal(207;0.0183)		Epithelial(121;1.28e-10)|all cancers(144;8.06e-08)|Lung(261;0.00834)|LUSC - Lung squamous cell carcinoma(224;0.00864)	Icosapent(DB00159)	AGTAAAAATTCGTTTGAGTCC	0.378			T	ETV1	prostate								32	55					0	0	1	0	0
MRPL44	65080	broad.mit.edu	37	2	224824592	224824592	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:224824592C>T	uc002vnr.3	+	2	590	c.521C>T	c.(520-522)GCT>GTT	p.A174V		NM_022915	NP_075066	Q9H9J2	RM44_HUMAN	mitochondrial ribosomal protein L44 precursor	174	RNase III.				RNA processing	mitochondrion|ribosome	double-stranded RNA binding|protein binding|ribonuclease III activity			central_nervous_system(1)	1		all_lung(227;0.00679)|Lung NSC(271;0.00855)|Renal(207;0.0112)|all_hematologic(139;0.189)		Epithelial(121;2.51e-10)|all cancers(144;7.89e-08)|Lung(261;0.00705)|LUSC - Lung squamous cell carcinoma(224;0.008)		AGAAACTTGGCTGTGGAGCAG	0.483													28	112					0	0	1	0	0
MRPL44	65080	broad.mit.edu	37	2	224824624	224824624	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:224824624C>T	uc002vnr.3	+	2	622	c.553C>T	c.(553-555)CCA>TCA	p.P185S		NM_022915	NP_075066	Q9H9J2	RM44_HUMAN	mitochondrial ribosomal protein L44 precursor	185	RNase III.				RNA processing	mitochondrion|ribosome	double-stranded RNA binding|protein binding|ribonuclease III activity			central_nervous_system(1)	1		all_lung(227;0.00679)|Lung NSC(271;0.00855)|Renal(207;0.0112)|all_hematologic(139;0.189)		Epithelial(121;2.51e-10)|all cancers(144;7.89e-08)|Lung(261;0.00705)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGAAGAATTCCCAGTGCCCCC	0.483													45	101					0	0	1	0	0
FAM124B	79843	broad.mit.edu	37	2	225265794	225265794	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:225265794C>T	uc002vnx.2	-	1	918	c.692G>A	c.(691-693)TGG>TAG	p.W231*	FAM124B_uc002vnw.2_Nonsense_Mutation_p.W231*	NM_001122779	NP_001116251	Q9H5Z6	F124B_HUMAN	hypothetical protein LOC79843 isoform a	231							protein binding			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0126)|Lung NSC(271;0.0161)|all_hematologic(139;0.138)		Epithelial(121;4.4e-10)|all cancers(144;2.02e-07)|Lung(261;0.00766)|LUSC - Lung squamous cell carcinoma(224;0.00825)		CTGAGTCTGCCACCTGGTGCT	0.488													23	75					0	0	1	0	0
CUL3	8452	broad.mit.edu	37	2	225365136	225365136	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:225365136G>A	uc002vny.2	-	11	1938	c.1554C>T	c.(1552-1554)GCC>GCT	p.A518A	CUL3_uc010zls.1_Silent_p.A452A|CUL3_uc010fwy.1_Silent_p.A524A|CUL3_uc002vnz.1_5'UTR	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	518					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		ACTTTGGTGTGGCTGACTGAG	0.428													52	121					0	0	1	0	0
DOCK10	55619	broad.mit.edu	37	2	225639752	225639752	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:225639752G>A	uc010fwz.1	-	52	6122	c.5883C>T	c.(5881-5883)ATC>ATT	p.I1961I	DOCK10_uc002vob.2_Silent_p.I1955I|DOCK10_uc002voa.2_Silent_p.I617I	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1961	DHR-2.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TCCGGTCTTCGATTTCCTTTT	0.507													16	44					0	0	1	0	0
DOCK10	55619	broad.mit.edu	37	2	225688361	225688361	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:225688361G>A	uc010fwz.1	-	28	3279	c.3040C>T	c.(3040-3042)CCC>TCC	p.P1014S	DOCK10_uc002vob.2_Missense_Mutation_p.P1008S	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1014							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TGAGGCCGGGGAAGCTAAGGA	0.368													26	76					0	0	1	0	0
DOCK10	55619	broad.mit.edu	37	2	225750837	225750837	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:225750837G>A	uc010fwz.1	-	6	794	c.555C>T	c.(553-555)TCC>TCT	p.S185S	DOCK10_uc002vob.2_Silent_p.S179S|DOCK10_uc002vod.1_Silent_p.S185S	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	185	PH.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		AGAGCCAGCCGGACTTGAAAA	0.498													12	119					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446683	226446683	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:226446683G>A	uc002voe.2	+	4	725	c.550G>A	c.(550-552)GAT>AAT	p.D184N	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	184										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		ACCCCACAGCGATGAATATTC	0.413													17	213					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446723	226446723	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:226446723G>A	uc002voe.2	+	4	765	c.590G>A	c.(589-591)CGA>CAA	p.R197Q	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	197										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		AAACCGAAGCGAAATCCGAAC	0.502													71	196					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447223	226447223	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:226447223C>T	uc002voe.2	+	4	1265	c.1090C>T	c.(1090-1092)CCC>TCC	p.P364S	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.P134S	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	364	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		CACGAAGCTTCCCGTGCTGGA	0.637													18	31					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447371	226447371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:226447371C>T	uc002voe.2	+	4	1413	c.1238C>T	c.(1237-1239)TCG>TTG	p.S413L	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.S183L	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	413	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		CTCTCCTCGTCGCCCCCACCC	0.682													5	15					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447461	226447461	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:226447461G>A	uc002voe.2	+	4	1503	c.1328G>A	c.(1327-1329)GGG>GAG	p.G443E	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.G213E	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	443	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GTCAGCATGGGGAGGTCCCTG	0.632													25	44					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447684	226447684	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:226447684C>T	uc002voe.2	+	4	1726	c.1551C>T	c.(1549-1551)CTC>CTT	p.L517L	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.L287L	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	517										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TGACCAGCCTCTTCTCCTCCG	0.697													9	19					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226491723	226491723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:226491723C>T	uc002voe.2	+	5	1884	c.1709C>T	c.(1708-1710)TCC>TTC	p.S570F	KIAA1486_uc010fxa.1_Silent_p.F99F|KIAA1486_uc002vof.1_Missense_Mutation_p.S340F	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	570										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GGGGCGTCTTCCTCCAGAGAG	0.527													5	12					0	0	1	0	0
RHBDD1	84236	broad.mit.edu	37	2	227731973	227731973	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227731973C>T	uc002voi.2	+	3	626	c.505C>T	c.(505-507)CCT>TCT	p.P169S	RHBDD1_uc010fxc.2_Missense_Mutation_p.P169S	NM_032276	NP_115652	Q8TEB9	RHBD1_HUMAN	rhomboid domain containing 1	169						integral to membrane	serine-type endopeptidase activity			ovary(1)	1		Renal(207;0.023)|all_lung(227;0.13)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;1.47e-11)|all cancers(144;1.52e-08)|Lung(261;0.0128)|LUSC - Lung squamous cell carcinoma(224;0.0175)		TTTGGGCTTTCCTGTACCGAA	0.393													65	203					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227886796	227886797	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227886796_227886797CC>TT	uc010zlt.1	-	43	4837_4838	c.4183_4184GG>AA	c.(4183-4185)GGG>AAG	p.G1395K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1395	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCCAGGGAGCCCCATGGCTCCT	0.52													56	172					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227895176	227895176	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227895176C>T	uc010zlt.1	-	41	4610	c.3956G>A	c.(3955-3957)GGA>GAA	p.G1319E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1319	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GCCATCTTTTCCATCACATCC	0.522													35	118					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227895207	227895207	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227895207G>A	uc010zlt.1	-	41	4579	c.3925C>T	c.(3925-3927)CCA>TCA	p.P1309S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1309	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TTGTATCCTGGAGGGCCTGGT	0.537													33	109					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227898144	227898144	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227898144C>T	uc010zlt.1	-	38	4213	c.3559G>A	c.(3559-3561)GGA>AGA	p.G1187R		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1187	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCTTTAGTTCCTTTCTGACCT	0.512											OREG0015250	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	38					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227907816	227907816	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227907816G>A	uc010zlt.1	-	36	4028	c.3374C>T	c.(3373-3375)TCC>TTC	p.S1125F		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1125	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TGGTCCAGAGGAGCCAGGTGG	0.473													22	44					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227915826	227915826	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227915826C>T	uc010zlt.1	-	33	3671	c.3017G>A	c.(3016-3018)AGA>AAA	p.R1006K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1006	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TGGTCCGTATCTTCCCGGCTC	0.547													36	132					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227919409	227919409	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227919409C>T	uc010zlt.1	-	31	3415	c.2761G>A	c.(2761-2763)GGA>AGA	p.G921R		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	921	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCAGGCTTTCCTCTTTCTCCG	0.507													20	60					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227919421	227919421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227919421G>A	uc010zlt.1	-	31	3403	c.2749C>T	c.(2749-2751)CCC>TCC	p.P917S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	917	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CTTTCTCCGGGAAAACCTGGG	0.507													16	51					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227922301	227922301	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227922301G>A	uc010zlt.1	-	29	3053	c.2399C>T	c.(2398-2400)CCT>CTT	p.P800L		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	800	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TAGGAATCCAGGAATGCCAGC	0.478													11	31					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227924928	227924928	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227924928G>A	uc010zlt.1	-	27	2742	c.2088C>T	c.(2086-2088)GCC>GCT	p.A696A		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	696	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCAGCCCAGGGGCACCTTGGG	0.428													50	107					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227942792	227942792	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227942792C>T	uc010zlt.1	-	25	2459	c.1805G>A	c.(1804-1806)GGG>GAG	p.G602E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	602	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TTCATGATCCCCCTGGGAATG	0.507													14	22					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227946862	227946862	+	Silent	SNP	C	T	T	rs137880920	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227946862C>T	uc010zlt.1	-	23	2319	c.1665G>A	c.(1663-1665)GCG>GCA	p.A555A		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	555	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TGTCACCCTTCGCCCCTTTGT	0.418													98	102					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227983423	227983423	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227983423C>T	uc010zlt.1	-	7	1081	c.427G>A	c.(427-429)GGC>AGC	p.G143S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	143	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCTCTTGAGCCATTGTGGCCA	0.483													27	78					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227983445	227983445	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227983445T>C	uc010zlt.1	-	7	1059	c.405A>G	c.(403-405)AAA>AAG	p.K135K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	135	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCATACCAGGTTTGCCTCTGG	0.493													29	67					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227985818	227985818	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:227985818C>T	uc010zlt.1	-	5	893	c.239G>A	c.(238-240)GGA>GAA	p.G80E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	80	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCCTGGGGCTCCCAGGGGTCC	0.547													11	45					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228137704	228137704	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228137704G>A	uc002vom.1	+	26	1960	c.1798G>A	c.(1798-1800)GAT>AAT	p.D600N	COL4A3_uc002von.1_Missense_Mutation_p.D600N|COL4A3_uc002voo.1_Missense_Mutation_p.D600N|COL4A3_uc002vop.1_Missense_Mutation_p.D600N|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	600	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		TCCTCCAGGGGATCCTGGCTC	0.567													22	58					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228153893	228153893	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228153893G>A	uc002vom.1	+	35	3071	c.2909G>A	c.(2908-2910)GGA>GAA	p.G970E	COL4A3_uc002von.1_Missense_Mutation_p.G970E|COL4A3_uc002voo.1_Missense_Mutation_p.G970E|COL4A3_uc002vop.1_Missense_Mutation_p.G970E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	970	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGTGAGAAAGGAAACAGAGGC	0.363													11	35					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228155603	228155603	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228155603G>A	uc002vom.1	+	37	3372	c.3210_splice	c.e37+1	p.T1070_splice	COL4A3_uc002von.1_Splice_Site_p.T1070_splice|COL4A3_uc002voo.1_Splice_Site_p.T1070_splice|COL4A3_uc002vop.1_Splice_Site_p.T1070_splice|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor						activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGGACCAACGGTATATAGGCC	0.478													5	21					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228175562	228175562	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228175562G>A	uc002vom.1	+	51	4988	c.4826G>A	c.(4825-4827)CGA>CAA	p.R1609Q	COL4A3_uc002von.1_Intron|COL4A3_uc002voo.1_Intron|COL4A3_uc002vop.1_Intron|uc002voq.1_Intron|uc002vor.1_Intron|COL4A3_uc010fxf.1_Missense_Mutation_p.R25Q	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1609	Collagen IV NC1.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GAAGAATTCCGAGCCAGCCCA	0.463													19	83					0	0	1	0	0
TM4SF20	79853	broad.mit.edu	37	2	228235632	228235632	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228235632C>T	uc002vpb.2	-	2	286	c.248G>A	c.(247-249)GGA>GAA	p.G83E		NM_024795	NP_079071	Q53R12	T4S20_HUMAN	transmembrane 4 L six family member 20	83	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Renal(207;0.025)|all_lung(227;0.123)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;3.8e-11)|all cancers(144;2.57e-08)|Lung(261;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0115)		CATACTTACTCCAGTTCTGTT	0.448													151	369					0	0	1	0	0
TM4SF20	79853	broad.mit.edu	37	2	228243815	228243815	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228243815C>T	uc002vpb.2	-	1	208	c.170G>A	c.(169-171)GGA>GAA	p.G57E		NM_024795	NP_079071	Q53R12	T4S20_HUMAN	transmembrane 4 L six family member 20	57	Helical; (Potential).					integral to membrane|plasma membrane					0		Renal(207;0.025)|all_lung(227;0.123)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;3.8e-11)|all cancers(144;2.57e-08)|Lung(261;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0115)		CAGACCTGCTCCTATAATTCC	0.418													26	82					0	0	1	0	0
AGFG1	3267	broad.mit.edu	37	2	228399602	228399602	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228399602C>T	uc002vpc.2	+	8	1316	c.1066C>T	c.(1066-1068)CCT>TCT	p.P356S	AGFG1_uc002vpd.2_Missense_Mutation_p.P380S|AGFG1_uc002vpe.2_Missense_Mutation_p.P356S|AGFG1_uc002vpf.2_Missense_Mutation_p.P316S	NM_004504	NP_004495	P52594	AGFG1_HUMAN	HIV-1 Rev binding protein isoform 2	356					cell differentiation|mRNA export from nucleus|multicellular organismal development|regulation of ARF GTPase activity|spermatogenesis	cytoplasmic membrane-bounded vesicle|Golgi apparatus|nuclear pore	ARF GTPase activator activity|DNA binding|protein binding|RNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AGGTAAAGCTCCTGTTGGTTC	0.448													30	90					0	0	1	0	0
WDR69	164781	broad.mit.edu	37	2	228754612	228754612	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228754612G>A	uc002vpn.1	+	3	233	c.154G>A	c.(154-156)GAA>AAA	p.E52K	WDR69_uc010zlw.1_Missense_Mutation_p.E37K|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	52										breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		CCAGAAGGCAGAACCTCTACT	0.383													27	65					0	0	1	0	0
WDR69	164781	broad.mit.edu	37	2	228786229	228786229	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228786229G>A	uc002vpn.1	+	12	1244	c.1165G>A	c.(1165-1167)GAA>AAA	p.E389K	WDR69_uc010zlw.1_Missense_Mutation_p.E374K|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	389	WD 8.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		GCACACTGATGAAATCTTTTC	0.438													30	88					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228860316	228860316	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228860316C>T	uc002vpq.2	-	8	4590	c.4543G>A	c.(4543-4545)GAG>AAG	p.E1515K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1515K|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1515						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CCTGTGCTCTCCTCGCTGCTG	0.572													52	92					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881311	228881311	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228881311G>A	uc002vpq.2	-	7	4306	c.4259C>T	c.(4258-4260)TCA>TTA	p.S1420L	SPHKAP_uc002vpp.2_Missense_Mutation_p.S1420L|SPHKAP_uc010zlx.1_Missense_Mutation_p.S1420L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1420						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CGAGCAAAGTGATCGCCTTTT	0.458													52	106					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881789	228881789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228881789C>T	uc002vpq.2	-	7	3828	c.3781G>A	c.(3781-3783)GAT>AAT	p.D1261N	SPHKAP_uc002vpp.2_Missense_Mutation_p.D1261N|SPHKAP_uc010zlx.1_Missense_Mutation_p.D1261N	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1261						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GCAAAGCCATCTAAAGAGTTG	0.542													18	64					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882050	228882050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228882050G>A	uc002vpq.2	-	7	3567	c.3520C>T	c.(3520-3522)CTC>TTC	p.L1174F	SPHKAP_uc002vpp.2_Missense_Mutation_p.L1174F|SPHKAP_uc010zlx.1_Missense_Mutation_p.L1174F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1174						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTCACACTGAGGTGGTCACTT	0.527													8	72					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882168	228882168	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228882168C>T	uc002vpq.2	-	7	3449	c.3402G>A	c.(3400-3402)GTG>GTA	p.V1134V	SPHKAP_uc002vpp.2_Silent_p.V1134V|SPHKAP_uc010zlx.1_Silent_p.V1134V	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1134						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CCATCTGGTTCACCATGAACC	0.527													17	36					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882500	228882500	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228882500C>T	uc002vpq.2	-	7	3117	c.3070G>A	c.(3070-3072)GAG>AAG	p.E1024K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1024K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E1024K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1024						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTCATGGACTCATCCACAACC	0.498													30	120					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882732	228882732	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228882732C>T	uc002vpq.2	-	7	2885	c.2838G>A	c.(2836-2838)GCG>GCA	p.A946A	SPHKAP_uc002vpp.2_Silent_p.A946A|SPHKAP_uc010zlx.1_Silent_p.A946A	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	946	PKA-RII subunit binding domain (By similarity).					cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CAAGGCAAATCGCTGCAATTT	0.473													18	129					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883024	228883024	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228883024C>T	uc002vpq.2	-	7	2593	c.2546G>A	c.(2545-2547)AGT>AAT	p.S849N	SPHKAP_uc002vpp.2_Missense_Mutation_p.S849N|SPHKAP_uc010zlx.1_Missense_Mutation_p.S849N	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	849						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTCATTCTCACTGTGATGAGG	0.498													42	88					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883252	228883252	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228883252G>A	uc002vpq.2	-	7	2365	c.2318C>T	c.(2317-2319)CCA>CTA	p.P773L	SPHKAP_uc002vpp.2_Missense_Mutation_p.P773L|SPHKAP_uc010zlx.1_Missense_Mutation_p.P773L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	773						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ATTGCTAAGTGGAGAGCTGCT	0.502													53	130					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883384	228883384	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228883384C>T	uc002vpq.2	-	7	2233	c.2186G>A	c.(2185-2187)CGG>CAG	p.R729Q	SPHKAP_uc002vpp.2_Missense_Mutation_p.R729Q|SPHKAP_uc010zlx.1_Missense_Mutation_p.R729Q	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	729						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTCACCAAGCCGTACAATATG	0.453													39	123					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884217	228884217	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228884217G>A	uc002vpq.2	-	7	1400	c.1353C>T	c.(1351-1353)GTC>GTT	p.V451V	SPHKAP_uc002vpp.2_Silent_p.V451V|SPHKAP_uc010zlx.1_Silent_p.V451V	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	451						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCTGAACAACGACGATTTTGG	0.507													27	78					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884347	228884347	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228884347G>A	uc002vpq.2	-	7	1270	c.1223C>T	c.(1222-1224)TCT>TTT	p.S408F	SPHKAP_uc002vpp.2_Missense_Mutation_p.S408F|SPHKAP_uc010zlx.1_Missense_Mutation_p.S408F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	408						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTGAGATTGAGATAATCTAAT	0.438													26	91					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884482	228884482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228884482C>T	uc002vpq.2	-	7	1135	c.1088G>A	c.(1087-1089)AGA>AAA	p.R363K	SPHKAP_uc002vpp.2_Missense_Mutation_p.R363K|SPHKAP_uc010zlx.1_Missense_Mutation_p.R363K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	363						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TAGGTTGCTTCTCTGCTCTGC	0.438													34	101					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884549	228884549	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228884549G>A	uc002vpq.2	-	7	1068	c.1021C>T	c.(1021-1023)CCA>TCA	p.P341S	SPHKAP_uc002vpp.2_Missense_Mutation_p.P341S|SPHKAP_uc010zlx.1_Missense_Mutation_p.P341S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	341						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GCATCTTTTGGAATATACAGT	0.423													58	130					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228886491	228886491	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:228886491C>T	uc002vpq.2	-	6	680	c.633G>A	c.(631-633)GAG>GAA	p.E211E	SPHKAP_uc002vpp.2_Silent_p.E211E|SPHKAP_uc010zlx.1_Silent_p.E211E	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	211						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GAAAGTCTTCCTCGATTGAAG	0.473													24	82					0	0	1	0	0
PID1	55022	broad.mit.edu	37	2	229890592	229890592	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:229890592G>A	uc002vpr.3	-	3	547	c.509C>T	c.(508-510)ACC>ATC	p.T170I	PID1_uc002vps.3_Missense_Mutation_p.T168I|PID1_uc002vpt.3_Missense_Mutation_p.T137I|PID1_uc002vpu.3_Missense_Mutation_p.T88I	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	170	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		GTGGTCGGCGGTGCAGTAGGC	0.587													39	84					0	0	1	0	0
PID1	55022	broad.mit.edu	37	2	229890618	229890618	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:229890618G>A	uc002vpr.3	-	3	521	c.483C>T	c.(481-483)TTC>TTT	p.F161F	PID1_uc002vps.3_Silent_p.F159F|PID1_uc002vpt.3_Silent_p.F128F|PID1_uc002vpu.3_Silent_p.F79F	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	161	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		GGGCCACCTGGAAGGTATCCA	0.572													29	75					0	0	1	0	0
DNER	92737	broad.mit.edu	37	2	230231657	230231657	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230231657C>T	uc002vpv.2	-	12	2181	c.2034G>A	c.(2032-2034)GAG>GAA	p.E678E		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	678	Cytoplasmic (Potential).|Interaction with AP1G1 and somatodendritic targeting (By similarity).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		TGTAGAACTCCTCATAGGCTG	0.582													22	47					0	0	1	0	0
DNER	92737	broad.mit.edu	37	2	230252982	230252982	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230252982G>A	uc002vpv.2	-	11	2001	c.1854C>T	c.(1852-1854)ATC>ATT	p.I618I		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	618	Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		AATACTTACGGATCTCACAGT	0.493													41	117					0	0	1	0	0
DNER	92737	broad.mit.edu	37	2	230272018	230272018	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230272018G>A	uc002vpv.2	-	10	1800	c.1653C>T	c.(1651-1653)AGC>AGT	p.S551S		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	551	Extracellular (Potential).|Follistatin-like.|EGF-like 9.				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		CGTTCAGACAGCTGACGTTAG	0.532													43	104					0	0	1	0	0
DNER	92737	broad.mit.edu	37	2	230456299	230456299	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230456299C>T	uc002vpv.2	-	2	729	c.582G>A	c.(580-582)GTG>GTA	p.V194V		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	194	Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		TTCTCACCTCCACTTGATCCC	0.428													14	38					0	0	1	0	0
DNER	92737	broad.mit.edu	37	2	230456417	230456417	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230456417G>A	uc002vpv.2	-	2	611	c.464C>T	c.(463-465)CCT>CTT	p.P155L		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	155	Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		AGCAGGAACAGGCTGAAGCTG	0.552													5	69					0	0	1	0	0
SLC16A14	151473	broad.mit.edu	37	2	230902178	230902178	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230902178C>T	uc002vqd.1	-	5	1814	c.1451G>A	c.(1450-1452)GGA>GAA	p.G484E	FBXO36_uc010fxi.1_Intron	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	484	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		AAAGAGTATTCCTATCATGTA	0.333													18	49					0	0	1	0	0
SLC16A14	151473	broad.mit.edu	37	2	230902211	230902211	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230902211G>A	uc002vqd.1	-	5	1781	c.1418C>T	c.(1417-1419)TCC>TTC	p.S473F	FBXO36_uc010fxi.1_Intron	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	473	Cytoplasmic (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		TATGTAGAAGGAAAAATCATA	0.323													20	47					0	0	1	0	0
SLC16A14	151473	broad.mit.edu	37	2	230911020	230911020	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230911020C>T	uc002vqd.1	-	4	1185	c.822G>A	c.(820-822)AGG>AGA	p.R274R	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.R274R|SLC16A14_uc002vqf.2_Silent_p.R274R	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	274	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		ACATGTTCTTCCTGTGCCCGG	0.592													42	92					0	0	1	0	0
SLC16A14	151473	broad.mit.edu	37	2	230911199	230911199	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230911199C>T	uc002vqd.1	-	4	1006	c.643G>A	c.(643-645)GGT>AGT	p.G215S	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.G215S|SLC16A14_uc002vqf.2_Missense_Mutation_p.G215S	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	215	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		GGGTTTTTACCAGGAGAGAGG	0.552													43	81					0	0	1	0	0
SLC16A14	151473	broad.mit.edu	37	2	230924019	230924019	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:230924019T>C	uc002vqd.1	-	2	413	c.50A>G	c.(49-51)AAA>AGA	p.K17R	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.K17R|SLC16A14_uc002vqf.2_Missense_Mutation_p.K17R	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	17	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		CTTTTTGTCTTTGGGGCCATC	0.408													5	69					0	0	1	0	0
SP110	3431	broad.mit.edu	37	2	231035380	231035380	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231035380C>T	uc002vqh.3	-	17	2153	c.1913G>A	c.(1912-1914)CGA>CAA	p.R638Q	SP110_uc002vqg.3_Missense_Mutation_p.R662Q	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	638	Bromo.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		GCGCATGTCTCGCACAAACCA	0.443													43	62					0	0	1	0	0
SP110	3431	broad.mit.edu	37	2	231077635	231077635	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231077635G>A	uc002vqh.3	-	4	664	c.424C>T	c.(424-426)CCA>TCA	p.P142S	SP110_uc002vqg.3_Missense_Mutation_p.P142S|SP110_uc002vqi.3_Missense_Mutation_p.P142S|SP110_uc010fxk.2_Missense_Mutation_p.P142S	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	142					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		GGGGGTTGTGGTGGGGGCAGC	0.577													35	120					0	0	1	0	0
SP140	11262	broad.mit.edu	37	2	231109737	231109737	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231109737C>T	uc002vql.2	+	6	721	c.606C>T	c.(604-606)CTC>CTT	p.L202L	SP140_uc010zma.1_RNA|SP140_uc002vqk.2_Silent_p.L202L|SP140_uc002vqn.2_Silent_p.L202L|SP140_uc002vqm.2_Silent_p.L202L|SP140_uc010fxl.2_Silent_p.L202L	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	202					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		AGTTAGCTCTCCCAAAGGCTG	0.458													21	66					0	0	1	0	0
SP140	11262	broad.mit.edu	37	2	231112699	231112699	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231112699G>A	uc002vql.2	+	8	926	c.811G>A	c.(811-813)GAG>AAG	p.E271K	SP140_uc010zma.1_Intron|SP140_uc002vqk.2_Missense_Mutation_p.E271K|SP140_uc002vqn.2_Intron|SP140_uc002vqm.2_Missense_Mutation_p.E245K|SP140_uc010fxl.2_Missense_Mutation_p.E271K	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	271					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GAAACAGGGAGAGGAGGAAGG	0.488													23	121					0	0	1	0	0
SP140	11262	broad.mit.edu	37	2	231115757	231115757	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231115757C>T	uc002vql.2	+	10	1153	c.1038C>T	c.(1036-1038)TCC>TCT	p.S346S	SP140_uc010zma.1_RNA|SP140_uc002vqk.2_Silent_p.S346S|SP140_uc002vqn.2_Intron|SP140_uc002vqm.2_Silent_p.S320S|SP140_uc010fxl.2_Silent_p.S346S	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	346					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CCTCTAGCTCCCTAGCAAGAT	0.478													19	43					0	0	1	0	0
SP140	11262	broad.mit.edu	37	2	231120199	231120199	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231120199G>A	uc002vql.2	+	12	1307	c.1192G>A	c.(1192-1194)GGA>AGA	p.G398R	SP140_uc010zma.1_RNA|SP140_uc002vqk.2_Missense_Mutation_p.G364R|SP140_uc002vqn.2_Missense_Mutation_p.G284R|SP140_uc002vqm.2_Missense_Mutation_p.G338R|SP140_uc010fxl.2_Intron	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	398					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		AATGTGTGATGGAGAAGAGCG	0.527													22	72					0	0	1	0	0
SP140	11262	broad.mit.edu	37	2	231150513	231150513	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231150513G>A	uc002vql.2	+	17	1726	c.1611G>A	c.(1609-1611)GCG>GCA	p.A537A	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Silent_p.A423A|SP140_uc002vqm.2_Silent_p.A477A|SP140_uc010fxl.2_Silent_p.A510A	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	537					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		AAAAGAAGGCGAACGTGAATC	0.443													17	179					0	0	1	0	0
SP140L	93349	broad.mit.edu	37	2	231222521	231222521	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231222521C>T	uc010fxm.1	+	3	200	c.109C>T	c.(109-111)CTG>TTG	p.L37L	SP140_uc010zma.1_RNA|SP140L_uc010fxn.1_5'UTR	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	37	HSR.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						TTTCCTTAGGCTGTTCACGGA	0.353													53	182					0	0	1	0	0
SP140L	93349	broad.mit.edu	37	2	231249970	231249970	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231249970G>A	uc010fxm.1	+	9	826	c.735G>A	c.(733-735)TCG>TCA	p.S245S	SP140L_uc010fxo.1_Silent_p.S52S	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	245						nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						AGCTGGTCTCGAGTGAAAAGA	0.458													12	84					0	0	1	0	0
SP140L	93349	broad.mit.edu	37	2	231264925	231264925	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231264925G>A	uc010fxm.1	+	15	1372	c.1281G>A	c.(1279-1281)GAG>GAA	p.E427E	SP140L_uc010fxo.1_Silent_p.E199E	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	427	PHD-type; degenerate.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						TCTTCCATGAGGACTGCCACA	0.512													25	66					0	0	1	0	0
SP100	6672	broad.mit.edu	37	2	231314955	231314955	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231314955C>T	uc002vqt.2	+	8	946	c.805C>T	c.(805-807)CCC>TCC	p.P269S	SP100_uc002vqs.2_Missense_Mutation_p.P269S|SP100_uc002vqu.1_Missense_Mutation_p.P269S|SP100_uc010zmb.1_Missense_Mutation_p.P269S|SP100_uc002vqq.1_Missense_Mutation_p.P269S|SP100_uc002vqr.1_Missense_Mutation_p.P244S|SP100_uc010zmc.1_Missense_Mutation_p.P244S|SP100_uc002vqv.1_Missense_Mutation_p.P233S	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	269					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CTGCCCGTTGCCCTGTGATGA	0.378													27	81					0	0	1	0	0
GPR55	9290	broad.mit.edu	37	2	231775112	231775112	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231775112C>T	uc002vrg.2	-	2	759	c.566G>A	c.(565-567)GGC>GAC	p.G189D	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Missense_Mutation_p.G189D	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	189	Helical; Name=5; (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		AAGGAGGAAGCCAAACACCTC	0.547													31	121					0	0	1	0	0
GPR55	9290	broad.mit.edu	37	2	231775413	231775414	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:231775413_231775414GG>AA	uc002vrg.2	-	2	457_458	c.264_265CC>TT	c.(262-267)TCCCCC>TCTTCC	p.P89S	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Missense_Mutation_p.P89S	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	89	Extracellular (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		GACGGGAAGGGGGACTGTACCT	0.554													24	56					0	0	1	0	0
ARMC9	80210	broad.mit.edu	37	2	232127033	232127033	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:232127033C>T	uc002vrq.3	+	12	1153	c.1041C>T	c.(1039-1041)TCC>TCT	p.S347S	ARMC9_uc002vrp.3_Silent_p.S347S|ARMC9_uc002vrr.1_RNA	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	347							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		TGACCACATCCCATCCTGGAG	0.478													32	115					0	0	1	0	0
B3GNT7	93010	broad.mit.edu	37	2	232263400	232263400	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:232263400C>T	uc002vrs.2	+	2	1150	c.970C>T	c.(970-972)CCG>TCG	p.P324S		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	324	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		GGAGCTCTACCCGATCGACGA	0.672													9	53					0	0	1	0	0
NCL	4691	broad.mit.edu	37	2	232320840	232320840	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:232320840G>A	uc002vru.2	-	12	1854	c.1713C>T	c.(1711-1713)TCC>TCT	p.S571S	SNORA75_uc002vrv.1_5'Flank	NM_005381	NP_005372	P19338	NUCL_HUMAN	nucleolin	571					angiogenesis	cell cortex|nucleolus|ribonucleoprotein complex	nucleotide binding|protein C-terminus binding|RNA binding|telomeric DNA binding			ovary(2)|pancreas(1)	3		Ovarian(221;1.34e-05)|Renal(207;0.0112)|Lung NSC(271;0.0339)|all_lung(227;0.0616)|all_hematologic(139;0.0748)|Hepatocellular(293;0.137)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.65e-111)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)|COAD - Colon adenocarcinoma(134;0.141)|STAD - Stomach adenocarcinoma(1183;0.18)		ACAGAGTTTTGGATGGCTCTG	0.438													15	50					0	0	1	0	0
NMUR1	10316	broad.mit.edu	37	2	232393203	232393203	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:232393203G>A	uc002vry.3	-	2	639	c.529C>T	c.(529-531)CAT>TAT	p.H177Y		NM_006056	NP_006047	Q9HB89	NMUR1_HUMAN	neuromedin U receptor 1	177	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|calcium ion transport|calcium-mediated signaling|chloride transport|smooth muscle contraction	integral to plasma membrane|membrane fraction	neuromedin U receptor activity			lung(3)|central_nervous_system(1)|pancreas(1)	5		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;8.37e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		CGGCGCACATGGGCCCGCGTC	0.682													21	45					0	0	1	0	0
COPS7B	64708	broad.mit.edu	37	2	232672238	232672238	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:232672238C>T	uc002vsg.1	+	7	781	c.678C>T	c.(676-678)TCC>TCT	p.S226S	COPS7B_uc010fxy.1_Silent_p.S192S|COPS7B_uc002vsh.1_Missense_Mutation_p.P244L|COPS7B_uc002vsi.1_Silent_p.S119S|COPS7B_uc002vsj.1_RNA|COPS7B_uc002vsk.1_Silent_p.S119S	NM_022730	NP_073567	Q9H9Q2	CSN7B_HUMAN	COP9 constitutive photomorphogenic homolog	226	Potential.				cullin deneddylation	cytoplasm|signalosome				ovary(1)|liver(1)|skin(1)	3		all_hematologic(139;0.0123)|Acute lymphoblastic leukemia(138;0.0182)|Renal(207;0.025)		Epithelial(121;1.36e-12)|BRCA - Breast invasive adenocarcinoma(100;0.00136)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		CCGCATCCTCCTCGGCTCAGG	0.547													13	37					0	0	1	0	0
ALPP	250	broad.mit.edu	37	2	233244485	233244485	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233244485G>A	uc002vsq.2	+	5	661	c.496G>A	c.(496-498)GGA>AGA	p.G166R	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	166						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		GAAGTCAGTGGGAGTGGTAAC	0.632													15	42					0	0	1	0	0
ALPP	250	broad.mit.edu	37	2	233245010	233245010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233245010G>A	uc002vsq.2	+	6	937	c.772G>A	c.(772-774)GAA>AAA	p.E258K	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	258						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		TCTGGTGCAGGAATGGCTGGC	0.647													31	97					0	0	1	0	0
ALPPL2	251	broad.mit.edu	37	2	233272030	233272030	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233272030C>T	uc002vss.3	+	3	272	c.219C>T	c.(217-219)ATC>ATT	p.I73I		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	73					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	CTGCCAGGATCCTAAAAGGGC	0.602													26	51					0	0	1	0	0
ALPPL2	251	broad.mit.edu	37	2	233273254	233273254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233273254C>T	uc002vss.3	+	7	880	c.827C>T	c.(826-828)TCC>TTC	p.S276F		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	276					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	CTGCAGGCTTCCCTGGACCCG	0.652													35	98					0	0	1	0	0
ALPPL2	251	broad.mit.edu	37	2	233274432	233274432	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233274432C>T	uc002vss.3	+	11	1502	c.1449C>T	c.(1447-1449)TTC>TTT	p.F483F		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	483					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	TCATGGCCTTCGCCGCCTGCC	0.751													14	25					0	0	1	0	0
ALPI	248	broad.mit.edu	37	2	233322985	233322985	+	Silent	SNP	G	A	A	rs143128875		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233322985G>A	uc002vst.3	+	9	1127	c.1050G>A	c.(1048-1050)GCG>GCA	p.A350A	ALPI_uc002vsu.3_Silent_p.A261A	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	350					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding	p.A350V(1)		central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		TCACTGAGGCGGTCATGTTCG	0.627													23	51					0	0	1	0	0
ALPI	248	broad.mit.edu	37	2	233323688	233323688	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233323688G>A	uc002vst.3	+	11	1496	c.1419G>A	c.(1417-1419)GAG>GAA	p.E473E	ALPI_uc002vsu.3_Silent_p.E384E	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	473					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GTGTGCAGGAGCAGAGCTTCG	0.711													6	14					0	0	1	0	0
ECEL1	9427	broad.mit.edu	37	2	233346338	233346338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233346338C>T	uc002vsv.2	-	14	2072	c.1867G>A	c.(1867-1869)GGC>AGC	p.G623S	ECEL1_uc010fya.1_Missense_Mutation_p.G621S|ECEL1_uc010fyb.1_Missense_Mutation_p.G330S	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	623	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity	p.G623D(1)		central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		TCATACTGGCCCCCTGTGGGC	0.652													11	27					0	0	1	0	0
ECEL1	9427	broad.mit.edu	37	2	233348889	233348889	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233348889C>T	uc002vsv.2	-	7	1434	c.1229G>A	c.(1228-1230)AGT>AAT	p.S410N	ECEL1_uc010fya.1_Missense_Mutation_p.S410N|ECEL1_uc010fyb.1_Missense_Mutation_p.S117N	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	410	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CAGGTGTTCACTCAGGACCAC	0.647													7	33					0	0	1	0	0
CHRND	1144	broad.mit.edu	37	2	233393629	233393629	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233393629G>T	uc002vsw.2	+	6	571	c.567G>T	c.(565-567)GAG>GAT	p.E189D	CHRND_uc010zmg.1_Missense_Mutation_p.E174D|CHRND_uc010fyc.2_Intron|CHRND_uc010zmh.1_Intron	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	189	Extracellular (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		ATGCCAAGGAGAACCGCACCT	0.557													15	94					0.00316338	0.00316523	1	1	0
CHRND	1144	broad.mit.edu	37	2	233394685	233394686	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233394685_233394686GG>AA	uc002vsw.2	+	7	660_661	c.656_657GG>AA	c.(655-657)AGG>AAA	p.R219K	CHRND_uc010zmg.1_Missense_Mutation_p.R204K|CHRND_uc010fyc.2_Missense_Mutation_p.R92K|CHRND_uc010zmh.1_Intron	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	219	Extracellular (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		CGGCCGGCCAGGGTCAACGTGG	0.644													18	99					0	0	1	0	0
CHRNG	1146	broad.mit.edu	37	2	233410375	233410375	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233410375G>A	uc002vsx.1	+	12	1524	c.1503G>A	c.(1501-1503)CCG>CCA	p.P501P	CHRNG_uc010fye.1_Silent_p.P449P	NM_005199	NP_005190	P07510	ACHG_HUMAN	cholinergic receptor, nicotinic, gamma	501					muscle contraction	cell junction|postsynaptic membrane	acetylcholine receptor activity				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;6.39e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00079)|LUSC - Lung squamous cell carcinoma(224;0.00757)|Lung(119;0.0086)		ACCGGGTGCCGGCCCTGCCAT	0.632													8	75					0	0	1	0	0
CHRNG	1146	broad.mit.edu	37	2	233410387	233410387	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233410387C>A	uc002vsx.1	+	12	1536	c.1515C>A	c.(1513-1515)TTC>TTA	p.F505L	CHRNG_uc010fye.1_Missense_Mutation_p.F453L	NM_005199	NP_005190	P07510	ACHG_HUMAN	cholinergic receptor, nicotinic, gamma	505					muscle contraction	cell junction|postsynaptic membrane	acetylcholine receptor activity				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;6.39e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00079)|LUSC - Lung squamous cell carcinoma(224;0.00757)|Lung(119;0.0086)		CCCTGCCATTCCCTGGAGATC	0.607													8	80					0.00829132	0.00829495	1	1	0
EFHD1	80303	broad.mit.edu	37	2	233546349	233546349	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233546349G>A	uc002vtc.2	+	4	848	c.640G>A	c.(640-642)GAT>AAT	p.D214N	EFHD1_uc010fyf.2_Missense_Mutation_p.D118N|EFHD1_uc002vtd.2_Missense_Mutation_p.D102N	NM_025202	NP_079478	Q9BUP0	EFHD1_HUMAN	EF-hand domain family, member D1	214							calcium ion binding|protein binding				0		all_hematologic(139;0.0123)|Acute lymphoblastic leukemia(138;0.0182)|Breast(86;0.0199)|Renal(207;0.025)		Epithelial(121;2.08e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00825)|Lung(119;0.0101)		AGCTGAGCAAGATGAGCGGAA	0.542													58	101					0	0	1	0	0
GIGYF2	26058	broad.mit.edu	37	2	233655986	233655986	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233655986C>T	uc002vti.3	+	14	1449	c.1112C>T	c.(1111-1113)CCC>CTC	p.P371L	GIGYF2_uc010zmj.1_Missense_Mutation_p.P371L|GIGYF2_uc002vtg.2_Missense_Mutation_p.P365L|GIGYF2_uc002vtj.3_Missense_Mutation_p.P392L|GIGYF2_uc002vtk.3_Missense_Mutation_p.P371L|GIGYF2_uc002vth.3_Missense_Mutation_p.P365L|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.P202L	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	371					cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		GAGGAAACTCCCCAGACCTCA	0.438													36	78					0	0	1	0	0
GIGYF2	26058	broad.mit.edu	37	2	233704569	233704569	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233704569C>T	uc002vti.3	+	25	3114	c.2777C>T	c.(2776-2778)TCT>TTT	p.S926F	GIGYF2_uc002vtj.3_Missense_Mutation_p.S947F|GIGYF2_uc002vtk.3_Missense_Mutation_p.S926F|GIGYF2_uc002vth.3_Missense_Mutation_p.S920F|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.S757F|GIGYF2_uc002vtq.3_Missense_Mutation_p.S259F	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	926	Gln-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		CTTCCTTCTTCTTCAACGTGG	0.453													12	55					0	0	1	0	0
NGEF	25791	broad.mit.edu	37	2	233752796	233752796	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233752796C>T	uc002vts.2	-	9	1542	c.1294G>A	c.(1294-1296)GAG>AAG	p.E432K	NGEF_uc010zmm.1_Missense_Mutation_p.E155K|NGEF_uc010fyg.1_Missense_Mutation_p.E340K	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	432	DH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		TCAGACCTCTCTTCTACCCTC	0.488													29	62					0	0	1	0	0
NEU2	4759	broad.mit.edu	37	2	233898898	233898898	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233898898G>A	uc010zmn.1	+	2	274	c.274G>A	c.(274-276)GAC>AAC	p.D92N		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	92							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		CCCCTTGTATGACGCGCAGAC	0.617													56	95					0	0	1	0	0
NEU2	4759	broad.mit.edu	37	2	233899198	233899198	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233899198C>T	uc010zmn.1	+	2	574	c.574C>T	c.(574-576)CCC>TCC	p.P192S		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	192							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		AAGGCCGATCCCCTCTGCCTT	0.657													38	70					0	0	1	0	0
NEU2	4759	broad.mit.edu	37	2	233899665	233899666	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233899665_233899666CC>TT	uc010zmn.1	+	2	1041_1042	c.1041_1042CC>TT	c.(1039-1044)TCCCCC>TCTTCC	p.P348S		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	348							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		CTGATGGGTCCCCCTTGTTTGG	0.589													78	177					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	233925273	233925273	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233925273C>T	uc010zmo.1	+	1	238	c.85C>T	c.(85-87)CTC>TTC	p.L29F	INPP5D_uc010zmp.1_Missense_Mutation_p.L29F	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	29	SH2.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CGGGAGCTTCCTCGTGCGTGC	0.642													12	32					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	233986949	233986949	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:233986949G>A	uc010zmo.1	+	3	484	c.331G>A	c.(331-333)GAC>AAC	p.D111N	INPP5D_uc010zmp.1_Missense_Mutation_p.D111N	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	111					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CACAGGCGACGACCCTGAGGA	0.567													13	29					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234072440	234072440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234072440C>T	uc010zmo.1	+	11	1481	c.1328C>T	c.(1327-1329)CCC>CTC	p.P443L	INPP5D_uc010zmp.1_Missense_Mutation_p.P442L	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	443					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GACTACATCCCCCATGACATT	0.557													31	138					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234106900	234106900	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234106900C>T	uc010zmo.1	+	24	3006	c.2853C>T	c.(2851-2853)TCC>TCT	p.S951S	INPP5D_uc010zmp.1_Silent_p.S950S	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	951	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CCAAGGACTCCCCGCTGGGGC	0.647													19	59					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234112908	234112908	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234112908G>A	uc010zmo.1	+	25	3265	c.3112G>A	c.(3112-3114)GAA>AAA	p.E1038K	INPP5D_uc010zmp.1_Missense_Mutation_p.E1037K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	1038	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GAAGGACCAGGAATCCCCCAA	0.637													16	52					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234112995	234112995	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234112995G>A	uc010zmo.1	+	25	3352	c.3199G>A	c.(3199-3201)GAG>AAG	p.E1067K	INPP5D_uc010zmp.1_Missense_Mutation_p.E1066K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	1067	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CAAAGCCCAGGAGGCTGATCG	0.711													17	38					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234113017	234113017	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234113017C>T	uc010zmo.1	+	25	3374	c.3221C>T	c.(3220-3222)CCC>CTC	p.P1074L	INPP5D_uc010zmp.1_Missense_Mutation_p.P1073L	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	1074	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GGCGAGGGGCCCGGCAAGCAG	0.706													10	37					0	0	1	0	0
ATG16L1	55054	broad.mit.edu	37	2	234200864	234200865	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234200864_234200865CC>TT	uc002vty.2	+	15	1778_1779	c.1521_1522CC>TT	c.(1519-1524)TCCCGT>TCTTGT	p.R508C	ATG16L1_uc002vtx.1_Missense_Mutation_p.R345C|ATG16L1_uc002vua.2_Missense_Mutation_p.R489C|ATG16L1_uc002vub.2_Missense_Mutation_p.R366C|ATG16L1_uc002vtz.2_Missense_Mutation_p.R329C|ATG16L1_uc002vud.3_Missense_Mutation_p.R424C	NM_030803	NP_110430	Q676U5	A16L1_HUMAN	APG16 autophagy 16-like isoform 1	508	WD 5.				autophagic vacuole assembly|protein homooligomerization|protein transport	autophagic vacuole|pre-autophagosomal structure membrane	protein binding				0		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0539)		Epithelial(121;1.53e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000379)|LUSC - Lung squamous cell carcinoma(224;0.00619)|Lung(119;0.00732)|GBM - Glioblastoma multiforme(43;0.11)		TGAGCTGCTCCCGTGATGACTT	0.475													17	60					0	0	1	0	0
DGKD	8527	broad.mit.edu	37	2	234357778	234357778	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234357778C>T	uc002vui.1	+	15	1656	c.1644C>T	c.(1642-1644)TCC>TCT	p.S548S	DGKD_uc002vuj.1_Silent_p.S504S|DGKD_uc010fyh.1_Silent_p.S415S|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	548					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	AGCTGGATTCCCTTCTCAAGA	0.463													57	144					0	0	1	0	0
DGKD	8527	broad.mit.edu	37	2	234368445	234368445	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234368445C>T	uc002vui.1	+	23	2749	c.2737C>T	c.(2737-2739)CCT>TCT	p.P913S	DGKD_uc002vuj.1_Missense_Mutation_p.P869S|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	913					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	TGAGGGCGTGCCTGTGCAGGT	0.572													19	33					0	0	1	0	0
USP40	55230	broad.mit.edu	37	2	234442224	234442224	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234442224G>A	uc010zmr.1	-	10	1405	c.1405C>T	c.(1405-1407)CAG>TAG	p.Q469*	USP40_uc010zmt.1_Nonsense_Mutation_p.Q113*	NM_018218	NP_060688	Q9NVE5	UBP40_HUMAN	ubiquitin thioesterase 40	457					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		CTGATTGGCTGGACTTTAGAA	0.423													31	74					0	0	1	0	0
UGT1A8	54576	broad.mit.edu	37	2	234526842	234526842	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234526842C>T	uc002vup.2	+	1	552	c.489C>T	c.(487-489)CTC>CTT	p.L163L	UGT1A8_uc010zmv.1_Silent_p.L163L	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	163					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		ATTTCTCCCTCCCCTCTGTGG	0.453													63	270					0	0	1	0	0
UGT1A8	54576	broad.mit.edu	37	2	234527192	234527192	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234527192G>A	uc002vup.2	+	1	902	c.839G>A	c.(838-840)GGA>GAA	p.G280E	UGT1A8_uc010zmv.1_Missense_Mutation_p.G280E	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	280					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGCCATCAGGGAAAGCCATTG	0.398													107	312					0	0	1	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545613	234545613	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234545613C>T	uc002vur.2	+	1	491	c.445C>T	c.(445-447)CCT>TCT	p.P149S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.P149S	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	149					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		GTTTCTGGATCCTTTTGATAC	0.383													72	144					0	0	1	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545895	234545895	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234545895G>A	uc002vur.2	+	1	773	c.727G>A	c.(727-729)GAT>AAT	p.D243N	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.D243N	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	243					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		CACGGCATATGATCTCTACAG	0.433													50	566					0	0	1	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581070	234581070	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234581070C>T	uc002vus.2	+	1	527	c.490C>T	c.(490-492)CCC>TCC	p.P164S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.P164S	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	164					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	TTTCTCCCTCCCCTCCGTGGT	0.433													69	195					0	0	1	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581261	234581261	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234581261C>T	uc002vus.2	+	1	718	c.681C>T	c.(679-681)GCC>GCT	p.A227A	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Silent_p.A227A	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	227					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	TCAAAAATGCCCTAGAAATAG	0.423													89	440					0	0	1	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581300	234581300	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234581300G>A	uc002vus.2	+	1	757	c.720G>A	c.(718-720)ACG>ACA	p.T240T	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Silent_p.T240T	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	240					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	CACCTGTTACGGAGTATGATC	0.428													171	445					0	0	1	0	0
UGT1A7	54577	broad.mit.edu	37	2	234590739	234590739	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234590739G>A	uc002vut.2	+	1	156	c.156G>A	c.(154-156)GGG>GGA	p.G52G	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Silent_p.G52G	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	52					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		TCCTCAGGGGGCATGAGGTGG	0.547													10	174					0	0	1	0	0
UGT1A7	54577	broad.mit.edu	37	2	234590866	234590866	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234590866G>A	uc002vut.2	+	1	283	c.283G>A	c.(283-285)GAT>AAT	p.D95N	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.D95N	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	95					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GGTTTTTGCCGATGCTCGCTG	0.433													61	142					0	0	1	0	0
UGT1A6	54578	broad.mit.edu	37	2	234601708	234601708	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234601708C>T	uc002vuv.3	+	1	197	c.58C>T	c.(58-60)CTT>TTT	p.L20F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Missense_Mutation_p.L20F	NM_001072	NP_001063	P19224	UD16_HUMAN	UDP glycosyltransferase 1 family, polypeptide A6	20					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity				0		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;5.86e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000384)|Lung(119;0.00306)|LUSC - Lung squamous cell carcinoma(224;0.00702)		CTTCTTAGCACTTTGGGGCAT	0.483													24	87					0	0	1	0	0
UGT1A5	54579	broad.mit.edu	37	2	234621899	234621899	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234621899G>A	uc002vuw.2	+	1	262	c.262G>A	c.(262-264)GAA>AAA	p.E88K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Missense_Mutation_p.E88K	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	88					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		GACCCAGGACGAATTTGATCG	0.428													53	113					0	0	1	0	0
UGT1A5	54579	broad.mit.edu	37	2	234622025	234622025	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234622025G>A	uc002vuw.2	+	1	388	c.388G>A	c.(388-390)GAG>AAG	p.E130K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Missense_Mutation_p.E130K	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	130					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		GTCTTGTGTGGAGCTACTGCA	0.438													58	221					0	0	1	0	0
UGT1A3	54659	broad.mit.edu	37	2	234638207	234638207	+	Silent	SNP	C	T	T	rs61764029		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234638207C>T	uc002vuy.2	+	1	435	c.435C>T	c.(433-435)TCC>TCT	p.S145S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Silent_p.S145S	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	145					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		ATGCTACTTCCTTTGATGTGG	0.448													90	232					0	0	1	0	0
UGT1A3	54659	broad.mit.edu	37	2	234638545	234638545	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234638545G>A	uc002vuy.2	+	1	773	c.773G>A	c.(772-774)CGA>CAA	p.R258Q	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Missense_Mutation_p.R258Q	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	258					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TGGCTGTTCCGAGGGGACTTT	0.507													99	231					0	0	1	0	0
DNAJB3	414061	broad.mit.edu	37	2	234652443	234652443	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234652443C>T	uc002vuz.2	-	1	219	c.120G>A	c.(118-120)GAG>GAA	p.E40E	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	40	J.				protein folding		heat shock protein binding|unfolded protein binding				0						TCTCCGCTTCCTCCTTGTTCT	0.622													82	175					0	0	1	0	0
UGT1A1	54658	broad.mit.edu	37	2	234669197	234669197	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234669197G>A	uc002vvb.2	+	1	279	c.264G>A	c.(262-264)GTG>GTA	p.V88V	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron|UGT1A9_uc002vva.2_Intron|UGT1A1_uc010znc.1_Silent_p.V88V	NM_000463	NP_000454	P22309	UD11_HUMAN	UDP glycosyltransferase 1 family, polypeptide A1	88					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			central_nervous_system(1)|skin(1)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	GGGAGGATGTGAAAGAGTCTT	0.418													59	160					0	0	1	0	0
UGT1A1	54658	broad.mit.edu	37	2	234669549	234669549	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234669549T>A	uc002vvb.2	+	1	631	c.616T>A	c.(616-618)TTC>ATC	p.F206I	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron|UGT1A9_uc002vva.2_Intron|UGT1A1_uc010znc.1_Missense_Mutation_p.F206I	NM_000463	NP_000454	P22309	UD11_HUMAN	UDP glycosyltransferase 1 family, polypeptide A1	206					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			central_nervous_system(1)|skin(1)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	TCACATGACCTTCCTGCAGCG	0.527													54	192					0	0	1	0	0
HJURP	55355	broad.mit.edu	37	2	234749363	234749364	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234749363_234749364GG>AA	uc002vvg.2	-	8	2128_2129	c.2062_2063CC>TT	c.(2062-2064)CCC>TTC	p.P688F	HJURP_uc010znd.1_Missense_Mutation_p.P627F|HJURP_uc010zne.1_Missense_Mutation_p.P596F	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	688					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		GGAGCCCTGGGGTTCTGATAGC	0.589													29	100					0	0	1	0	0
HJURP	55355	broad.mit.edu	37	2	234750088	234750088	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234750088G>A	uc002vvg.2	-	8	1404	c.1338C>T	c.(1336-1338)TGC>TGT	p.C446C	HJURP_uc010znd.1_Silent_p.C385C|HJURP_uc010zne.1_Silent_p.C354C	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	446					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		TGGGACTCAGGCAATATTCCC	0.547													33	112					0	0	1	0	0
MSL3L2	151507	broad.mit.edu	37	2	234775285	234775285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234775285G>A	uc010znf.1	-	2	795	c.557C>T	c.(556-558)TCG>TTG	p.S186L		NR_024322				SubName: Full=cDNA FLJ52683, highly similar to Male-specific lethal 3-like 1; SubName: Full=cDNA, FLJ79271, highly similar to Male-specific lethal 3-like 1; SubName: Full=HCG1642047;												0						GGTGTGGGGCGAGGACCGCCT	0.617													9	52					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234855777	234855777	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234855777G>A	uc002vvh.2	+	8	960	c.920G>A	c.(919-921)GGA>GAA	p.G307E	TRPM8_uc010fyj.2_5'UTR	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	307	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	TTTGCCCAAGGAGGTGGAAAA	0.368													20	50					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234858655	234858655	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234858655C>T	uc002vvh.2	+	9	1045	c.1005C>T	c.(1003-1005)ATC>ATT	p.I335I	TRPM8_uc010fyj.2_Silent_p.I23I	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	335	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CGGGCCAGATCGCTGATGTGA	0.552													18	42					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234862561	234862561	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234862561C>T	uc002vvh.2	+	10	1181	c.1141C>T	c.(1141-1143)CTC>TTC	p.L381F	TRPM8_uc010fyj.2_Missense_Mutation_p.L69F	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	381	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	ATTTCGCCAGCTCAAAGAAAT	0.373													12	29					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234873392	234873392	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234873392C>T	uc002vvh.2	+	14	1910	c.1870C>T	c.(1870-1872)CGG>TGG	p.R624W	TRPM8_uc010fyj.2_Missense_Mutation_p.R312W	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	624	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	GTACGAGACCCGGGCTGTTGG	0.582													20	72					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234878915	234878916	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234878915_234878916CC>TT	uc002vvh.2	+	17	2240_2241	c.2200_2201CC>TT	c.(2200-2202)CCC>TTC	p.P734F	TRPM8_uc010fyj.2_Intron	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	734	Extracellular (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CTTCACCTCCCCCTTCGTGGTC	0.54													91	250					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234878920	234878920	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234878920C>T	uc002vvh.2	+	17	2245	c.2205C>T	c.(2203-2205)TTC>TTT	p.F735F	TRPM8_uc010fyj.2_Intron	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	735	Helical; Name=2; (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CCTCCCCCTTCGTGGTCTTCT	0.547													111	232					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234915531	234915531	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234915531G>A	uc002vvh.2	+	23	3205	c.3165G>A	c.(3163-3165)TGG>TGA	p.W1055*	TRPM8_uc010fyj.2_Nonsense_Mutation_p.W633*|TRPM8_uc010fyk.2_RNA	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	1055	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CTCTGGCATGGGAGGGTGTCA	0.398													13	30					0	0	1	0	0
SPP2	6694	broad.mit.edu	37	2	234975199	234975199	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:234975199G>A	uc002vvk.1	+	5	552	c.467G>A	c.(466-468)GGA>GAA	p.G156E	SPP2_uc010fyl.1_Missense_Mutation_p.G76E	NM_006944	NP_008875	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa precursor	156					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity				0		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		GACATGTTGGGATCTCATAAA	0.308													42	105					0	0	1	0	0
SH3BP4	23677	broad.mit.edu	37	2	235949554	235949554	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:235949554C>T	uc002vvp.2	+	4	534	c.141C>T	c.(139-141)CTC>CTT	p.L47L	SH3BP4_uc010fym.2_Silent_p.L47L|SH3BP4_uc002vvq.2_Silent_p.L47L	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	47					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		GTGCCTTGCTCGTAGACAACC	0.542													41	97					0	0	1	0	0
AGAP1	116987	broad.mit.edu	37	2	236653459	236653459	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:236653459C>T	uc002vvs.2	+	5	1109	c.514C>T	c.(514-516)CCT>TCT	p.P172S	AGAP1_uc002vvt.2_Missense_Mutation_p.P172S	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	172	Small GTPase-like.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						GAGCGAGATTCCTCTGGTTCT	0.433													19	52					0	0	1	0	0
AGAP1	116987	broad.mit.edu	37	2	236949460	236949460	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:236949460C>T	uc002vvs.2	+	15	2461	c.1866C>T	c.(1864-1866)TCC>TCT	p.S622S	AGAP1_uc002vvt.2_Silent_p.S569S	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	622	Arf-GAP.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						GCGGGAACTCCCACTGTGTGG	0.627													24	56					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237246931	237246931	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:237246931G>A	uc002vvz.1	-	17	2233	c.2051C>T	c.(2050-2052)CCC>CTC	p.P684L	IQCA1_uc002vwb.2_Missense_Mutation_p.P692L|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.P643L	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	684							ATP binding			ovary(1)	1						AGCATCGAAGGGACGCCGTGT	0.488													22	48					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237374332	237374332	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:237374332C>T	uc002vvz.1	-	6	924	c.742G>A	c.(742-744)GAA>AAA	p.E248K	IQCA1_uc002vwb.2_Missense_Mutation_p.E255K|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.E248K	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	248							ATP binding			ovary(1)	1						GCACTGACTTCATTAAAGAGA	0.418													4	18					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237405806	237405806	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:237405806G>A	uc002vvz.1	-	2	518	c.336C>T	c.(334-336)CCC>CCT	p.P112P	IQCA1_uc002vwb.2_Silent_p.P119P|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Silent_p.P112P	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	112							ATP binding			ovary(1)	1						GAGTGCTTACGGGGGCCAGCT	0.448													10	7					0	0	1	0	0
CXCR7	57007	broad.mit.edu	37	2	237489255	237489255	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:237489255C>T	uc010fyq.2	+	3	377	c.147C>T	c.(145-147)TTC>TTT	p.F49F	CXCR7_uc002vwd.2_Silent_p.F49F	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	49	Helical; Name=1; (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		CGCTCTCCTTCATTTACATTT	0.527													8	20					0	0	1	0	0
CXCR7	57007	broad.mit.edu	37	2	237489273	237489273	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:237489273C>T	uc010fyq.2	+	3	395	c.165C>T	c.(163-165)TTC>TTT	p.F55F	CXCR7_uc002vwd.2_Silent_p.F55F	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	55	Helical; Name=1; (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		TTTTCATCTTCGTCATCGGCA	0.522													4	22					0	0	1	0	0
CXCR7	57007	broad.mit.edu	37	2	237489440	237489440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:237489440C>T	uc010fyq.2	+	3	562	c.332C>T	c.(331-333)CCC>CTC	p.P111L	CXCR7_uc002vwd.2_Missense_Mutation_p.P111L	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	111	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		AACCAGTGGCCCATGGGCGAG	0.572													29	107					0	0	1	0	0
CXCR7	57007	broad.mit.edu	37	2	237489685	237489685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:237489685G>A	uc010fyq.2	+	3	807	c.577G>A	c.(577-579)GAG>AAG	p.E193K	CXCR7_uc002vwd.2_Missense_Mutation_p.E193K	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	193	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		GTCCAACAATGAGACCTACTG	0.592													33	116					0	0	1	0	0
CXCR7	57007	broad.mit.edu	37	2	237489689	237489689	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:237489689C>T	uc010fyq.2	+	3	811	c.581C>T	c.(580-582)ACC>ATC	p.T194I	CXCR7_uc002vwd.2_Missense_Mutation_p.T194I	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	194	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		AACAATGAGACCTACTGCCGG	0.587													33	112					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238249231	238249231	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238249231C>T	uc002vwl.2	-	38	8613	c.8328G>A	c.(8326-8328)AGG>AGA	p.R2776R	COL6A3_uc002vwo.2_Silent_p.R2570R|COL6A3_uc010znj.1_Silent_p.R2169R|COL6A3_uc002vwj.2_Silent_p.R157R	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2776	VWFA 12.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TGTTCACCTTCCTGCCAATGC	0.562													34	77					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238256999	238256999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238256999C>T	uc002vwl.2	-	30	7244	c.6959G>A	c.(6958-6960)GGA>GAA	p.G2320E	COL6A3_uc002vwo.2_Missense_Mutation_p.G2114E|COL6A3_uc010znj.1_Missense_Mutation_p.G1713E|COL6A3_uc002vwp.1_Missense_Mutation_p.G141E	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2320	Collagen-like 5.|Triple-helical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TACCTTTGGTCCTGGGTATCC	0.299													36	98					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238270463	238270463	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238270463G>A	uc002vwl.2	-	15	6360	c.6075C>T	c.(6073-6075)GCC>GCT	p.A2025A	COL6A3_uc002vwo.2_Silent_p.A1819A|COL6A3_uc010znj.1_Silent_p.A1418A	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2025	Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AAGCTTTCTCGGCAATGTTGT	0.522													23	84					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238272008	238272008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238272008C>T	uc002vwl.2	-	14	6236	c.5951G>A	c.(5950-5952)CGA>CAA	p.R1984Q	COL6A3_uc002vwo.2_Missense_Mutation_p.R1778Q|COL6A3_uc010znj.1_Missense_Mutation_p.R1377Q	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1984	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GTTGACCACTCGTTCAAGGCC	0.478													16	69					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238277483	238277484	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238277483_238277484GG>AA	uc002vwl.2	-	10	4907_4908	c.4622_4623CC>TT	c.(4621-4623)CCC>CTT	p.P1541L	COL6A3_uc002vwo.2_Missense_Mutation_p.P1335L|COL6A3_uc010znj.1_Missense_Mutation_p.P934L	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1541	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCAGGTGTTGGGGCACCCCGTC	0.574													40	88					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238277716	238277716	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238277716G>A	uc002vwl.2	-	10	4675	c.4390C>T	c.(4390-4392)CGA>TGA	p.R1464*	COL6A3_uc002vwo.2_Nonsense_Mutation_p.R1258*|COL6A3_uc010znj.1_Nonsense_Mutation_p.R857*	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1464	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TTGAGTCTTCGAACAATCCTG	0.473													20	36					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238287447	238287447	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238287447C>T	uc002vwl.2	-	6	2614	c.2329G>A	c.(2329-2331)GGA>AGA	p.G777R	COL6A3_uc002vwo.2_Missense_Mutation_p.G571R|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.G571R|COL6A3_uc002vwr.2_Missense_Mutation_p.G370R|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	777	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TGGCTAGCTCCCACACAAAAA	0.552													8	28					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238296801	238296801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238296801G>A	uc002vwl.2	-	4	1021	c.736C>T	c.(736-738)CTT>TTT	p.L246F	COL6A3_uc002vwo.2_Missense_Mutation_p.L40F|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.L40F|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.L246F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	246	VWFA 2.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCATCAATAAGGAAAATAATG	0.378													21	73					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238303556	238303556	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238303556C>T	uc002vwl.2	-	3	668	c.383G>A	c.(382-384)AGC>AAC	p.S128N	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.S128N	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	128	VWFA 1.|Nonhelical region.			QS -> AK (in Ref. 4; AAB24261).	axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGTGAGGTGGCTTTGCATTAT	0.478													43	81					0	0	1	0	0
RAB17	64284	broad.mit.edu	37	2	238494746	238494746	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238494746G>A	uc002vwz.1	-	2	696	c.52C>T	c.(52-54)CGT>TGT	p.R18C	RAB17_uc002vxa.1_RNA|RAB17_uc002vxb.1_RNA	NM_022449	NP_071894	Q9H0T7	RAB17_HUMAN	RAB17, member RAS oncogene family	18					protein transport|small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|protein binding				0		Renal(207;0.00272)|Breast(86;0.00297)|all_hematologic(139;0.182)|Ovarian(221;0.221)		Epithelial(121;9.36e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.26e-10)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000354)|Lung(119;0.011)|LUSC - Lung squamous cell carcinoma(224;0.026)		TTGAACACACGGGGCTGGCTG	0.592													33	61					0	0	1	0	0
RBM44	375316	broad.mit.edu	37	2	238722307	238722307	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238722307G>A	uc002vxi.3	+	2	190	c.58G>A	c.(58-60)GGA>AGA	p.G20R		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	19							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		CCACAGTAATGGAGGCAACCT	0.423													16	47					0	0	1	0	0
RBM44	375316	broad.mit.edu	37	2	238725807	238725807	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238725807C>T	uc002vxi.3	+	3	380	c.248C>T	c.(247-249)TCA>TTA	p.S83L		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	82							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		CCATTTTTTTCAGTGAGTCAA	0.333													28	61					0	0	1	0	0
RBM44	375316	broad.mit.edu	37	2	238726810	238726810	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238726810C>T	uc002vxi.3	+	3	1383	c.1251C>T	c.(1249-1251)ATC>ATT	p.I417I		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	416							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		TACCAAAGATCGCAGTCAGAG	0.373													17	38					0	0	1	0	0
RAMP1	10267	broad.mit.edu	37	2	238820283	238820283	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238820283G>A	uc002vxj.2	+	3	437	c.305G>A	c.(304-306)AGG>AAG	p.R102K		NM_005855	NP_005846	O60894	RAMP1_HUMAN	receptor activity-modifying protein 1 precursor	102	Extracellular (Potential).				intracellular protein transport|regulation of G-protein coupled receptor protein signaling pathway	integral to plasma membrane	protein transporter activity				0		Breast(86;0.000596)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;9.56e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.49e-11)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;8.49e-08)|BRCA - Breast invasive adenocarcinoma(100;0.00013)|Lung(119;0.0119)|LUSC - Lung squamous cell carcinoma(224;0.0288)	Pramlintide(DB01278)	CGCTACTTCAGGAGCTGCCCC	0.657													18	40					0	0	1	0	0
UBE2F	140739	broad.mit.edu	37	2	238944540	238944540	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:238944540C>T	uc002vxk.2	+	9	557	c.466C>T	c.(466-468)CCA>TCA	p.P156S	UBE2F_uc010znn.1_Missense_Mutation_p.P124S|UBE2F_uc002vxl.2_RNA|UBE2F_uc010zno.1_RNA|UBE2F_uc010znp.1_3'UTR|SCLY_uc002vxm.3_5'UTR	NM_080678	NP_542409	Q969M7	UBE2F_HUMAN	NEDD8-conjugating enzyme	156					protein neddylation		ATP binding|NEDD8 ligase activity|protein binding				0		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;6.7e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|Kidney(56;3.53e-09)|KIRC - Kidney renal clear cell carcinoma(57;9.79e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000136)|Lung(119;0.0126)|LUSC - Lung squamous cell carcinoma(224;0.0301)		TTTTGATGATCCACTGAATAT	0.373													15	44					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239010604	239010604	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239010604C>T	uc002vxq.3	+	2	427	c.317C>T	c.(316-318)TCC>TTC	p.S106F		NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	106	ANK 4.									pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		TCGGGCGTCTCCCCGCTGCAC	0.706													7	13					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239010666	239010666	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239010666G>A	uc002vxq.3	+	2	489	c.379G>A	c.(379-381)GGC>AGC	p.G127S		NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	127	ANK 4.									pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GCTCCACGAGGGCCACTCGGC	0.701													3	17					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239016599	239016599	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239016599G>A	uc002vxq.3	+	4	950	c.840G>A	c.(838-840)GAG>GAA	p.E280E	ESPNL_uc010fyw.2_Silent_p.E20E	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	280	ANK 9.									pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		ACGCAGCAGAGAACGGGCAGA	0.468													9	32					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239025621	239025621	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239025621G>A	uc002vxq.3	+	5	1043	c.933G>A	c.(931-933)GCG>GCA	p.A311A	ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	311										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		CAGACCTGGCGGAGTACCATG	0.677													10	17					0	0	1	0	0
PER2	8864	broad.mit.edu	37	2	239161976	239161976	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239161976G>A	uc002vyc.2	-	19	2925	c.2688C>T	c.(2686-2688)TTC>TTT	p.F896F	PER2_uc010znv.1_Silent_p.F896F	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	896	Pro-rich.				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		AAGGGGCAGGGAAAGGTGGGG	0.652													22	37					0	0	1	0	0
PER2	8864	broad.mit.edu	37	2	239162337	239162337	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239162337G>A	uc002vyc.2	-	19	2564	c.2327C>T	c.(2326-2328)CCT>CTT	p.P776L	PER2_uc010znv.1_Missense_Mutation_p.P776L	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	776					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		TCTTAGTCCAGGGGCAGCTAA	0.368													10	12					0	0	1	0	0
PER2	8864	broad.mit.edu	37	2	239169470	239169470	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239169470G>A	uc002vyc.2	-	13	1778	c.1541C>T	c.(1540-1542)GCC>GTC	p.A514V	PER2_uc010znv.1_Missense_Mutation_p.A514V	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	514					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GAGACGTACGGCTCTCCTCCG	0.567													128	342					0	0	1	0	0
PER2	8864	broad.mit.edu	37	2	239181733	239181733	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239181733G>A	uc002vyc.2	-	5	785	c.548C>T	c.(547-549)TCT>TTT	p.S183F	PER2_uc010znv.1_Missense_Mutation_p.S183F|PER2_uc010znw.1_Missense_Mutation_p.S183F|PER2_uc010fyx.1_Missense_Mutation_p.S183F	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	183	PAS 1.				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		AATGTGCTCAGAGGTAACGCT	0.552													22	58					0	0	1	0	0
TRAF3IP1	26146	broad.mit.edu	37	2	239242627	239242627	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239242627G>A	uc002vye.2	+	7	1133	c.1014G>A	c.(1012-1014)AAG>AAA	p.K338K	TRAF3IP1_uc002vyf.2_Silent_p.K338K	NM_015650	NP_056465	Q8TDR0	MIPT3_HUMAN	TNF receptor-associated factor 3 interacting	338	DISC1-interaction domain.					cytoplasm|cytoskeleton	protein binding			ovary(1)	1		all_epithelial(40;3.22e-10)|Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.156)|all_hematologic(139;0.182)		Epithelial(121;9.92e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.85e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.01e-07)|BRCA - Breast invasive adenocarcinoma(100;7.72e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0184)		GAGCTTCCAAGTCATTGACAA	0.299													6	29					0	0	1	0	0
HDAC4	9759	broad.mit.edu	37	2	239990214	239990214	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239990214G>A	uc002vyk.3	-	23	3617	c.2825C>T	c.(2824-2826)CCT>CTT	p.P942L	HDAC4_uc010fyy.2_Missense_Mutation_p.P899L	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	942	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		GCCCCCAAGAGGGGTGGGGTG	0.597													16	46					0	0	1	0	0
HDAC4	9759	broad.mit.edu	37	2	239990240	239990240	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:239990240G>A	uc002vyk.3	-	23	3591	c.2799C>T	c.(2797-2799)TTC>TTT	p.F933F	HDAC4_uc010fyy.2_Silent_p.F890F	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	933	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		CCACGGCATCGAAGCCTGATG	0.597													8	67					0	0	1	0	0
HDAC4	9759	broad.mit.edu	37	2	240016749	240016749	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:240016749G>A	uc002vyk.3	-	17	3014	c.2222C>T	c.(2221-2223)TCG>TTG	p.S741L	HDAC4_uc010fyz.1_Missense_Mutation_p.S736L|HDAC4_uc010zoa.1_Missense_Mutation_p.S741L|HDAC4_uc010fza.2_Missense_Mutation_p.S746L|HDAC4_uc010fyy.2_Missense_Mutation_p.S698L|HDAC4_uc010znz.1_Missense_Mutation_p.S624L	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	741	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		GGAGGCGAGCGAGCCTGTGGG	0.617													42	111					0	0	1	0	0
OR6B2	389090	broad.mit.edu	37	2	240969787	240969788	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:240969787_240969788GG>AA	uc002vyr.2	-	2	105_106	c.59_60CC>TT	c.(58-60)GCC>GTT	p.A20V	OR6B2_uc010zoc.1_Missense_Mutation_p.A20V	NM_001005853	NP_001005853	Q6IFH4	OR6B2_HUMAN	olfactory receptor, family 6, subfamily B,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.4e-29)|all cancers(36;2.08e-27)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)		GCAGCCCTGGGGCCGTGGGGAG	0.579													6	58					0	0	1	0	0
MYEOV2	150678	broad.mit.edu	37	2	241069402	241069402	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241069402G>A	uc002vyu.1	-	4	307	c.307C>T	c.(307-309)CCC>TCC	p.P103S		NM_138336	NP_612209	Q8WXC6	MYOV2_HUMAN	hypothetical protein LOC150678 isoform 1	Error:Variant_position_missing_in_Q8WXC6_after_alignment											0		all_epithelial(40;1.56e-11)|Breast(86;0.0002)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.81e-30)|all cancers(36;1.1e-27)|OV - Ovarian serous cystadenocarcinoma(60;2.74e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.54e-06)|Lung(119;0.00361)|LUSC - Lung squamous cell carcinoma(224;0.0153)|Colorectal(34;0.0202)|COAD - Colon adenocarcinoma(134;0.143)		TGCAGTGCGGGAACCATGGAG	0.602													20	47					0	0	1	0	0
OTOS	150677	broad.mit.edu	37	2	241078664	241078664	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241078664C>T	uc002vyv.2	-	4	348	c.193G>A	c.(193-195)GAC>AAC	p.D65N	MYEOV2_uc002vyu.1_5'Flank|MYEOV2_uc010zof.1_5'Flank	NM_148961	NP_683764	Q8NHW6	OTOSP_HUMAN	otospiralin precursor	65						extracellular region					0		all_epithelial(40;2.79e-15)|Breast(86;3.04e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0396)|Lung NSC(271;0.128)|Hepatocellular(293;0.148)|all_hematologic(139;0.158)|Melanoma(123;0.16)		Epithelial(32;2.56e-30)|all cancers(36;7.18e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.37e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.07e-06)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		CGGGCCATGTCCTCGATCTGG	0.637													29	77					0	0	1	0	0
GPC1	2817	broad.mit.edu	37	2	241401948	241401948	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241401948C>T	uc002vyw.3	+	3	887	c.666C>T	c.(664-666)TCC>TCT	p.S222S		NM_002081	NP_002072	P35052	GPC1_HUMAN	glypican 1 precursor	222					axon guidance	anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;4.51e-33)|all cancers(36;1.74e-30)|OV - Ovarian serous cystadenocarcinoma(60;4.73e-15)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;9.1e-06)|Colorectal(34;0.000487)|Lung(119;0.0013)|LUSC - Lung squamous cell carcinoma(224;0.0154)|COAD - Colon adenocarcinoma(134;0.0194)|READ - Rectum adenocarcinoma(96;0.0949)		CTGCTCGCTCCTTTGTGCAGG	0.711													14	36					0	0	1	0	0
GPC1	2817	broad.mit.edu	37	2	241405670	241405670	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241405670T>A	uc002vyw.3	+	9	1861	c.1640T>A	c.(1639-1641)TTC>TAC	p.F547Y		NM_002081	NP_002072	P35052	GPC1_HUMAN	glypican 1 precursor	547					axon guidance	anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;4.51e-33)|all cancers(36;1.74e-30)|OV - Ovarian serous cystadenocarcinoma(60;4.73e-15)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;9.1e-06)|Colorectal(34;0.000487)|Lung(119;0.0013)|LUSC - Lung squamous cell carcinoma(224;0.0154)|COAD - Colon adenocarcinoma(134;0.0194)|READ - Rectum adenocarcinoma(96;0.0949)		CTCCTCCTCTTCCTGGCCCTT	0.632													5	59					0	0	1	0	0
ANKMY1	51281	broad.mit.edu	37	2	241468740	241468740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241468740G>A	uc002vyz.1	-	4	629	c.400C>T	c.(400-402)CTC>TTC	p.L134F	ANKMY1_uc002vza.1_Intron|ANKMY1_uc010fzd.1_Missense_Mutation_p.L223F|ANKMY1_uc002vzb.1_Intron|ANKMY1_uc002vzc.1_Intron|ANKMY1_uc002vzd.1_Intron|ANKMY1_uc010fze.1_Intron|ANKMY1_uc002vze.2_Intron	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	134							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		TCTTCTGAGAGGCTGATCCTG	0.542													16	46					0	0	1	0	0
CAPN10	11132	broad.mit.edu	37	2	241528843	241528843	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241528843C>T	uc002vzk.1	+	2	409	c.225C>T	c.(223-225)TTC>TTT	p.F75F	CAPN10_uc010zoh.1_Silent_p.F75F|CAPN10_uc002vzl.1_Silent_p.F75F|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_5'UTR|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Silent_p.F75F	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	75	Calpain catalytic.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		ATTGCTGGTTCCTGTGTGCCT	0.602													51	120					0	0	1	0	0
CAPN10	11132	broad.mit.edu	37	2	241534449	241534449	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241534449C>T	uc002vzk.1	+	7	1190	c.1006C>T	c.(1006-1008)CTC>TTC	p.L336F	CAPN10_uc010zoh.1_Missense_Mutation_p.L336F|CAPN10_uc002vzl.1_Missense_Mutation_p.L336F|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Missense_Mutation_p.L208F|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	336	Domain III 1.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		AGAGAGGCTGCTCTGCCATAC	0.637													18	42					0	0	1	0	0
CAPN10	11132	broad.mit.edu	37	2	241535813	241535813	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241535813C>T	uc002vzk.1	+	8	1540	c.1356C>T	c.(1354-1356)GAC>GAT	p.D452D	CAPN10_uc002vzl.1_Intron|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Silent_p.D324D|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	452	Domain III 1.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		ATGCATACGACCGGGAGGTCC	0.652													13	86					0	0	1	0	0
CAPN10	11132	broad.mit.edu	37	2	241555917	241555917	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241555917C>T	uc002vzq.1	+	3	563	c.386C>T	c.(385-387)TCA>TTA	p.S129L	GPR35_uc010fzh.1_5'UTR|GPR35_uc010fzi.1_5'UTR	NM_023089	NP_075577	Q9HC96	CAN10_HUMAN	calpain 10 isoform g	Error:Variant_position_missing_in_Q9HC96_after_alignment					actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		tccgatacttcaccagattca	0													141	266					0	0	1	0	0
GPR35	2859	broad.mit.edu	37	2	241569435	241569435	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241569435C>T	uc002vzs.1	+	1	641	c.66C>T	c.(64-66)GGC>GGT	p.G22G	GPR35_uc010fzh.1_Silent_p.G53G|GPR35_uc010fzi.1_Silent_p.G53G	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	22	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		TCAAGCTGGGCTTCTACGCCT	0.647													31	65					0	0	1	0	0
GPR35	2859	broad.mit.edu	37	2	241569451	241569451	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241569451G>A	uc002vzs.1	+	1	657	c.82G>A	c.(82-84)GGC>AGC	p.G28S	GPR35_uc010fzh.1_Missense_Mutation_p.G59S|GPR35_uc010fzi.1_Missense_Mutation_p.G59S	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	28	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		CGCCTACTTGGGCGTCCTGCT	0.627													19	64					0	0	1	0	0
GPR35	2859	broad.mit.edu	37	2	241569725	241569726	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241569725_241569726GG>AA	uc002vzs.1	+	1	931_932	c.356_357GG>AA	c.(355-357)CGG>CAA	p.R119Q	GPR35_uc010fzh.1_Missense_Mutation_p.R150Q|GPR35_uc010fzi.1_Missense_Mutation_p.R150Q	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	119	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		GTGGCCGTGCGGCACCCGCTGC	0.708													9	25					0	0	1	0	0
GPR35	2859	broad.mit.edu	37	2	241569894	241569894	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241569894C>T	uc002vzs.1	+	1	1100	c.525C>T	c.(523-525)TTC>TTT	p.F175F	GPR35_uc010fzh.1_Silent_p.F206F|GPR35_uc010fzi.1_Silent_p.F206F	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	175	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		CCATGGCGTTCCCGCTGCTGG	0.657													16	72					0	0	1	0	0
AQP12B	653437	broad.mit.edu	37	2	241622226	241622226	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241622226A>T	uc010fzj.2	-	1	92	c.29T>A	c.(28-30)TTC>TAC	p.F10Y	AQP12B_uc002vzt.2_Intron	NM_001102467	NP_001095937	A6NM10	AQ12B_HUMAN	aquaporin 12B	10	Helical; Name=1; (Potential).					integral to membrane	transporter activity				0		all_epithelial(40;1.71e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		GGCAAAGAAGAAGGAGAGGGA	0.667													29	75					0	0	1	0	0
AQP12A	375318	broad.mit.edu	37	2	241631526	241631526	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241631526G>A	uc002vzu.2	+	2	228	c.159G>A	c.(157-159)GGG>GGA	p.G53G	AQP12A_uc002vzv.2_Intron	NM_198998	NP_945349	Q8IXF9	AQ12A_HUMAN	aquaporin 12A	53						integral to membrane	transporter activity				0		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		CCTGGGCTGGGGACTTTGGGC	0.697													6	27					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241659339	241659339	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241659339G>A	uc002vzy.2	-	44	4716	c.4570C>T	c.(4570-4572)CCG>TCG	p.P1524S	KIF1A_uc010fzk.2_Missense_Mutation_p.P1625S|KIF1A_uc002vzw.2_Missense_Mutation_p.P185S|KIF1A_uc002vzx.2_Missense_Mutation_p.P251S	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1524					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CAGGGCTGCGGGGTCCTGGGA	0.682													7	24					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241689931	241689931	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241689931G>A	uc002vzy.2	-	26	2735	c.2589C>T	c.(2587-2589)CCC>CCT	p.P863P	KIF1A_uc010fzk.2_Silent_p.P964P|KIF1A_uc002vzz.1_Silent_p.P964P	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	863					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CCAGGGGAACGGGGTACAGCA	0.657													7	36					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241700753	241700753	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241700753A>C	uc002vzy.2	-	23	2277	c.2131T>G	c.(2131-2133)TTC>GTC	p.F711V	KIF1A_uc010fzk.2_Missense_Mutation_p.F720V|KIF1A_uc002vzz.1_Missense_Mutation_p.F720V	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	711					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CACTTCCGGAAGGCCCAGAGC	0.622													23	46					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241710444	241710444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241710444G>A	uc002vzy.2	-	14	1404	c.1258C>T	c.(1258-1260)CTC>TTC	p.L420F	KIF1A_uc010fzk.2_Missense_Mutation_p.L429F|KIF1A_uc002vzz.1_Missense_Mutation_p.L429F	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	420					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CGCTCGTGGAGGCTGGACACG	0.642													30	54					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241727533	241727533	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241727533C>T	uc002vzy.2	-	4	444	c.298G>A	c.(298-300)GGT>AGT	p.G100S	KIF1A_uc010fzk.2_Missense_Mutation_p.G100S|KIF1A_uc002vzz.1_Missense_Mutation_p.G100S	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	100	Kinesin-motor.|ATP (By similarity).				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		TTGCCGGCACCCGTCTGCCCA	0.642													4	10					0	0	1	0	0
AGXT	189	broad.mit.edu	37	2	241808421	241808421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241808421G>A	uc002waa.3	+	1	260	c.139G>A	c.(139-141)GGG>AGG	p.G47R	AGXT_uc010zoi.1_Missense_Mutation_p.G47R	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	47					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	GCAGATGATCGGGTCCATGAG	0.642													36	73					0	0	1	0	0
AGXT	189	broad.mit.edu	37	2	241812411	241812411	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241812411C>T	uc002waa.3	+	5	661	c.540C>T	c.(538-540)CTC>CTT	p.L180L	AGXT_uc010zoi.1_Silent_p.L180L	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	180					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	AGTGCCTGCTCCTGGTGGATT	0.657													29	124					0	0	1	0	0
AGXT	189	broad.mit.edu	37	2	241812439	241812439	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241812439G>A	uc002waa.3	+	5	689	c.568G>A	c.(568-570)GGG>AGG	p.G190R	AGXT_uc010zoi.1_Missense_Mutation_p.G190R	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	190			G -> R (in HP1).		glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	ATCCCTGGGCGGGACCCCCCT	0.662													13	120					0	0	1	0	0
AGXT	189	broad.mit.edu	37	2	241815373	241815373	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241815373C>T	uc002waa.3	+	8	919	c.798C>T	c.(796-798)GTC>GTT	p.V266V	AGXT_uc002wab.3_5'Flank	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	266					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	CAATCCCCGTCATCAGCCTGT	0.617													4	43					0	0	1	0	0
C2orf54	79919	broad.mit.edu	37	2	241831098	241831098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241831098G>A	uc002wae.3	-	2	756	c.597C>T	c.(595-597)TTC>TTT	p.F199F	C2orf54_uc002wac.2_Silent_p.F31F|C2orf54_uc002wad.2_Silent_p.F50F	NM_001085437	NP_001078906	Q08AI8	CB054_HUMAN	hypothetical protein LOC79919 isoform 1	199											0		all_epithelial(40;3.99e-16)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)		GCACCACGTGGAAGCTGATTG	0.627													39	73					0	0	1	0	0
SNED1	25992	broad.mit.edu	37	2	241976665	241976665	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241976665G>A	uc002wah.1	+	6	940	c.940G>A	c.(940-942)GAA>AAA	p.E314K		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	314	EGF-like 2.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		AGACGTGAACGAATGTGCCTC	0.627													6	12					0	0	1	0	0
SNED1	25992	broad.mit.edu	37	2	241987827	241987827	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:241987827G>A	uc002wah.1	+	9	1369	c.1369G>A	c.(1369-1371)GAA>AAA	p.E457K		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	457	EGF-like 5.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		CGAGTGCCCCGAAGGCTTCAT	0.667													4	20					0	0	1	0	0
SNED1	25992	broad.mit.edu	37	2	242003063	242003063	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242003063G>A	uc002wah.1	+	18	2431	c.2431G>A	c.(2431-2433)GGG>AGG	p.G811R	SNED1_uc002wai.1_Missense_Mutation_p.G46R|SNED1_uc002waj.1_5'Flank|SNED1_uc002wak.2_5'Flank	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	811	EGF-like 12; calcium-binding (Potential).				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		GAACCTCCCAGGGGCCTATGT	0.627													3	14					0	0	1	0	0
MTERFD2	130916	broad.mit.edu	37	2	242039285	242039285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242039285G>A	uc002wan.1	-	1	626	c.133C>T	c.(133-135)CCC>TCC	p.P45S	MTERFD2_uc010zoj.1_Intron|MTERFD2_uc010zok.1_Missense_Mutation_p.P16S	NM_182501	NP_872307	Q7Z6M4	MTER2_HUMAN	MTERF domain containing 2	16										ovary(1)	1		all_cancers(19;4.67e-31)|all_epithelial(40;8.67e-13)|Breast(86;0.000141)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;2.47e-32)|all cancers(36;1.79e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-14)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;2.81e-06)|Lung(119;0.000509)|LUSC - Lung squamous cell carcinoma(224;0.00442)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0886)		CAGGTGAGGGGGATCAGGCGG	0.498													14	33					0	0	1	0	0
MTERFD2	130916	broad.mit.edu	37	2	242039363	242039363	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242039363G>A	uc002wan.1	-	1	548	c.55C>T	c.(55-57)CCA>TCA	p.P19S	MTERFD2_uc010zoj.1_Intron|MTERFD2_uc010zok.1_Intron	NM_182501	NP_872307	Q7Z6M4	MTER2_HUMAN	MTERF domain containing 2	Error:Variant_position_missing_in_Q7Z6M4_after_alignment										ovary(1)	1		all_cancers(19;4.67e-31)|all_epithelial(40;8.67e-13)|Breast(86;0.000141)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;2.47e-32)|all cancers(36;1.79e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-14)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;2.81e-06)|Lung(119;0.000509)|LUSC - Lung squamous cell carcinoma(224;0.00442)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0886)		CAGTGTAATGGACACCATAAG	0.443													6	20					0	0	1	0	0
PASK	23178	broad.mit.edu	37	2	242054730	242054730	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242054730G>A	uc002wao.1	-	13	3263	c.3171C>T	c.(3169-3171)TCC>TCT	p.S1057S	PASK_uc010zol.1_Silent_p.S871S|PASK_uc010zom.1_Silent_p.S1022S|PASK_uc010fzl.1_Silent_p.S1057S|PASK_uc010zon.1_Silent_p.S838S|PASK_uc002wap.2_Silent_p.S600S|PASK_uc002waq.2_Silent_p.S1057S	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	1057	Protein kinase.				regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		GCTCCACCCTGGATAGAATTG	0.423													42	69					0	0	1	0	0
PASK	23178	broad.mit.edu	37	2	242082349	242082349	+	Silent	SNP	G	A	A	rs145347607		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242082349G>A	uc002wao.1	-	2	191	c.99C>T	c.(97-99)ACC>ACT	p.T33T	PASK_uc010zol.1_5'UTR|PASK_uc010zom.1_Silent_p.T33T|PASK_uc010fzl.1_Silent_p.T33T|PASK_uc010zon.1_Intron|PASK_uc002waq.2_Silent_p.T33T	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	33					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		GCTCAGCAGTGGTCTGTGCAG	0.597													7	52					0	0	1	0	0
ANO7	50636	broad.mit.edu	37	2	242129552	242129552	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242129552G>A	uc002wax.2	+	2	339	c.236G>A	c.(235-237)AGG>AAG	p.R79K	ANO7_uc002waw.2_Missense_Mutation_p.R79K	NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	79	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						GCAGAGAAGAGGGGCTCTTAC	0.662													4	5					0	0	1	0	0
ANO7	50636	broad.mit.edu	37	2	242151573	242151573	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242151573C>T	uc002wax.2	+	16	1891	c.1788C>T	c.(1786-1788)TTC>TTT	p.F596F		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	596	Helical; (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						TCTTCCAGTTCGTCAACTTCT	0.582													41	77					0	0	1	0	0
ANO7	50636	broad.mit.edu	37	2	242151616	242151616	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242151616G>A	uc002wax.2	+	16	1934	c.1831G>A	c.(1831-1833)GGC>AGC	p.G611S		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	611	Extracellular (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						CTTCTTCAAGGGCAGGTTGGT	0.582													20	60					0	0	1	0	0
SEPT2	4735	broad.mit.edu	37	2	242285635	242285635	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242285635C>T	uc002wbc.2	+	11	1318	c.897C>T	c.(895-897)TTC>TTT	p.F299F	SEPT2_uc002wbd.2_Silent_p.F299F|SEPT2_uc002wbf.2_Silent_p.F299F|SEPT2_uc002wbg.2_Silent_p.F299F|SEPT2_uc002wbh.2_Silent_p.F309F|SEPT2_uc010zop.1_Silent_p.F334F	NM_001008491	NP_001008491	Q15019	SEPT2_HUMAN	septin 2	299					cell division|mitosis	actin cytoskeleton|cleavage furrow|condensed chromosome kinetochore|midbody|nucleolus|septin complex|spindle	GTP binding			central_nervous_system(1)	1		all_cancers(19;7.62e-41)|all_epithelial(40;1.71e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.24e-34)|all cancers(36;7.15e-32)|OV - Ovarian serous cystadenocarcinoma(60;1.21e-15)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;3.16e-06)|Lung(119;7.81e-05)|LUSC - Lung squamous cell carcinoma(224;0.000742)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0889)		ATGAAAACTTCCGTTCTGAGA	0.507													11	62					0	0	1	0	0
THAP4	51078	broad.mit.edu	37	2	242573389	242573389	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242573389G>A	uc002wbt.2	-	2	406	c.183C>T	c.(181-183)ACC>ACT	p.T61T		NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	61	THAP-type.						DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		AGCTGTCTTTGGTGAAATGCT	0.512													65	133					0	0	1	0	0
ATG4B	23192	broad.mit.edu	37	2	242598552	242598552	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242598552C>T	uc002wbv.2	+	7	591	c.488C>T	c.(487-489)TCC>TTC	p.S163F	ATG4B_uc002wbu.2_Missense_Mutation_p.S89F|ATG4B_uc002wbw.2_Missense_Mutation_p.S163F|ATG4B_uc010zox.1_Missense_Mutation_p.S149F|ATG4B_uc010zoy.1_Missense_Mutation_p.S89F|ATG4B_uc010fzp.2_Missense_Mutation_p.S163F|ATG4B_uc010zoz.1_Missense_Mutation_p.S89F	NM_013325	NP_037457	Q9Y4P1	ATG4B_HUMAN	APG4 autophagy 4 homolog B isoform a	163					autophagic vacuole assembly|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.44e-33)|all cancers(36;5.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.75e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0848)		ACGTGGAGCTCCTTGGCGGTC	0.453													12	24					0	0	1	0	0
GAL3ST2	64090	broad.mit.edu	37	2	242741358	242741358	+	Silent	SNP	C	T	T	rs140456342		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242741358C>T	uc002wcj.1	+	3	413	c.282C>T	c.(280-282)TAC>TAT	p.Y94Y		NM_022134	NP_071417	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	94	Lumenal (Potential).				biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		ACCTGGGCTACCCCTGGCTCT	0.657													23	49					0	0	1	0	0
GAL3ST2	64090	broad.mit.edu	37	2	242742894	242742894	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242742894C>T	uc002wcj.1	+	4	641	c.510C>T	c.(508-510)TTC>TTT	p.F170F		NM_022134	NP_071417	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	170	Lumenal (Potential).				biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TGGACGCGTTCCTGGCCTCGC	0.627													7	15					0	0	1	0	0
NEU4	129807	broad.mit.edu	37	2	242755720	242755720	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242755720C>T	uc010fzr.2	+	2	125	c.39C>T	c.(37-39)TTC>TTT	p.F13F	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Silent_p.F13F|NEU4_uc002wcn.1_Silent_p.F25F|NEU4_uc002wco.1_Silent_p.F13F|NEU4_uc002wcp.1_Silent_p.F25F	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	13						lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		CAGTGCTCTTCGAGCGGGAGA	0.697													9	41					0	0	1	0	0
NEU4	129807	broad.mit.edu	37	2	242757862	242757862	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242757862G>A	uc010fzr.2	+	4	1029	c.943G>A	c.(943-945)GAA>AAA	p.E315K	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Missense_Mutation_p.E315K|NEU4_uc002wcn.1_Missense_Mutation_p.E327K|NEU4_uc002wco.1_Missense_Mutation_p.E315K|NEU4_uc002wcp.1_Missense_Mutation_p.E327K	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	315	Pro-rich.					lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		TGGAGTCCACGAACCCCCAGA	0.716													3	21					0	0	1	0	0
PDCD1	5133	broad.mit.edu	37	2	242794827	242794827	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242794827G>A	uc002wcq.3	-	2	450	c.382C>T	c.(382-384)CTG>TTG	p.L128L	PDCD1_uc010fzs.2_Silent_p.L59L|PDCD1_uc010fzt.2_Intron	NM_005018	NP_005009	Q15116	PDCD1_HUMAN	programmed cell death 1 precursor	128	Ig-like V-type.|Extracellular (Potential).				apoptosis|humoral immune response|multicellular organismal development|T cell costimulation	integral to membrane	protein tyrosine phosphatase activity|signal transducer activity			ovary(1)	1		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0219)		TTGGGGGCCAGGGAGATGGCC	0.677													15	41					0	0	1	0	0
C2orf85	285093	broad.mit.edu	37	2	242812010	242812010	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242812010G>A	uc010fzu.1	+	1	125	c.102G>A	c.(100-102)CTG>CTA	p.L34L		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	34						integral to membrane				ovary(1)	1						AGCACAGCCTGGTCCCGGGAT	0.682													7	9					0	0	1	0	0
C2orf85	285093	broad.mit.edu	37	2	242814347	242814347	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242814347G>A	uc010fzu.1	+	2	663	c.640G>A	c.(640-642)GAC>AAC	p.D214N		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	214						integral to membrane				ovary(1)	1						TACCAGCAATGACCAGGTGCC	0.667													19	31					0	0	1	0	0
C2orf85	285093	broad.mit.edu	37	2	242814477	242814477	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242814477G>A	uc010fzu.1	+	2	793	c.770G>A	c.(769-771)GGG>GAG	p.G257E		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	257						integral to membrane				ovary(1)	1						GCCATGCCTGGGGGCAAAGGC	0.667													19	39					0	0	1	0	0
C2orf85	285093	broad.mit.edu	37	2	242814637	242814637	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242814637C>T	uc010fzu.1	+	2	953	c.930C>T	c.(928-930)TCC>TCT	p.S310S		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	310						integral to membrane				ovary(1)	1						GCCCCATCTCCCTCAACAATG	0.662													25	61					0	0	1	0	0
C2orf85	285093	broad.mit.edu	37	2	242815135	242815135	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:242815135C>T	uc010fzu.1	+	2	1451	c.1428C>T	c.(1426-1428)TTC>TTT	p.F476F		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	476						integral to membrane				ovary(1)	1						CCATCCCCTTCGCAGTCTTCG	0.627													19	99					0	0	1	0	0
C20orf96	140680	broad.mit.edu	37	20	257964	257964	+	Missense_Mutation	SNP	T	C	C	rs144025240		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:257964T>C	uc002wde.1	-	7	765	c.626A>G	c.(625-627)AAC>AGC	p.N209S	C20orf96_uc002wdc.2_Missense_Mutation_p.N156S|C20orf96_uc002wdd.2_Missense_Mutation_p.N174S|C20orf96_uc010zpi.1_Missense_Mutation_p.N156S|C20orf96_uc010zpj.1_Missense_Mutation_p.N174S|C20orf96_uc010zpk.1_Missense_Mutation_p.N147S	NM_153269	NP_695001	Q9NUD7	CT096_HUMAN	hypothetical protein LOC140680	209	Potential.										0		all_cancers(10;0.00959)|Lung NSC(37;0.227)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			GCTCAGGAAGTTCACTTCCTC	0.537													90	209					0	0	1	0	0
TRIB3	57761	broad.mit.edu	37	20	377122	377122	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:377122C>T	uc002wdm.2	+	4	1371	c.865C>T	c.(865-867)CGC>TGC	p.R289C	TRIB3_uc002wdn.2_Missense_Mutation_p.R316C	NM_021158	NP_066981	Q96RU7	TRIB3_HUMAN	tribbles 3	289	Protein kinase.				apoptosis|cellular lipid metabolic process|insulin receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fatty acid biosynthetic process|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of protein binding|positive regulation of ubiquitin-protein ligase activity|regulation of glucose transport|regulation of MAP kinase activity|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	ATP binding|protein kinase activity|protein kinase binding|protein kinase inhibitor activity|transcription corepressor activity|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			central_nervous_system(2)	2		all_epithelial(17;0.165)|Lung NSC(37;0.191)|Breast(17;0.231)		Colorectal(46;0.101)|COAD - Colon adenocarcinoma(99;0.112)		GGCCCCTGCCCGCTGTCTGGT	0.692													36	85					0	0	1	0	0
TBC1D20	128637	broad.mit.edu	37	20	428611	428611	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:428611G>A	uc002wds.2	-	2	316	c.178C>T	c.(178-180)CTC>TTC	p.L60F	TBC1D20_uc002wdv.2_5'UTR|TBC1D20_uc002wdt.2_RNA|TBC1D20_uc002wdu.2_RNA	NM_144628	NP_653229	Q96BZ9	TBC20_HUMAN	TBC1 domain family, member 20	60	Rab-GAP TBC.				interspecies interaction between organisms	integral to membrane|intracellular	Rab GTPase activator activity			central_nervous_system(1)	1		all_epithelial(17;0.228)|Breast(17;0.231)				TCAGTCAGGAGCCCTCCTTCA	0.527													18	55					0	0	1	0	0
C20orf46	55321	broad.mit.edu	37	20	1161580	1161580	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1161580C>T	uc010gaa.1	-	3	902	c.683G>A	c.(682-684)AGA>AAA	p.R228K	C20orf46_uc002weq.1_Missense_Mutation_p.R228K	NM_018354	NP_060824	Q9NUR3	CT046_HUMAN	hypothetical protein LOC55321	228						integral to membrane	protein binding			ovary(1)	1						ATTGAGCTGTCTCATGCGCAG	0.602													37	74					0	0	1	0	0
C20orf46	55321	broad.mit.edu	37	20	1162148	1162148	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1162148C>T	uc010gaa.1	-	3	334	c.115G>A	c.(115-117)GGT>AGT	p.G39S	C20orf46_uc002weq.1_Missense_Mutation_p.G39S	NM_018354	NP_060824	Q9NUR3	CT046_HUMAN	hypothetical protein LOC55321	39						integral to membrane	protein binding			ovary(1)	1						GCTTGGGGACCATTGCTCAGT	0.602													4	53					0	0	1	0	0
C20orf46	55321	broad.mit.edu	37	20	1162161	1162161	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1162161C>A	uc010gaa.1	-	3	321	c.102G>T	c.(100-102)AAG>AAT	p.K34N	C20orf46_uc002weq.1_Missense_Mutation_p.K34N	NM_018354	NP_060824	Q9NUR3	CT046_HUMAN	hypothetical protein LOC55321	34						integral to membrane	protein binding			ovary(1)	1						TGCTCAGTGTCTTCAGTTCCA	0.587													4	52					0.00024832	0.000248601	1	1	0
SIRPB2	284759	broad.mit.edu	37	20	1456817	1456817	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1456817C>T	uc002wfg.2	-	5	1252	c.1024G>A	c.(1024-1026)GAG>AAG	p.E342K	SIRPB2_uc002wfh.3_Missense_Mutation_p.E244K	NM_001122962	NP_001116434	Q5JXA9	SIRB2_HUMAN	signal-regulatory protein beta 2 isoform 1	342	Cytoplasmic (Potential).					integral to membrane					0						ACCCCTCACTCTTGACCCTTG	0.612													30	94					0	0	1	0	0
SIRPB2	284759	broad.mit.edu	37	20	1459186	1459186	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1459186C>T	uc002wfg.2	-	3	746	c.518G>A	c.(517-519)GGA>GAA	p.G173E	SIRPB2_uc002wfh.3_Missense_Mutation_p.G75E|SIRPB2_uc010zpr.1_Missense_Mutation_p.G35E	NM_001122962	NP_001116434	Q5JXA9	SIRB2_HUMAN	signal-regulatory protein beta 2 isoform 1	173	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane					0						GACAGTGTCTCCAGTGGTCCC	0.562													19	50					0	0	1	0	0
SIRPB1	10326	broad.mit.edu	37	20	1551584	1551584	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1551584C>T	uc010gai.2	-	4	1050	c.951G>A	c.(949-951)GTG>GTA	p.V317V	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	317	Ig-like C1-type 2.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						CACAGGTGTTCACCAGGAGCC	0.552													17	135					0	0	1	0	0
SIRPB1	10326	broad.mit.edu	37	20	1552399	1552399	+	Missense_Mutation	SNP	G	A	A	rs142083473	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1552399G>A	uc010gai.2	-	3	817	c.718C>T	c.(718-720)CGT>TGT	p.R240C	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	240	Ig-like C1-type 1.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GCAGTCCCACGAAGAGGGTCC	0.627													31	76					0	0	1	0	0
SIRPB1	10326	broad.mit.edu	37	20	1552609	1552609	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1552609C>T	uc010gai.2	-	3	607	c.508G>A	c.(508-510)GAG>AAG	p.E170K	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	170	Ig-like C1-type 1.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						CCATGGGACTCGCAGGTGAAG	0.567													34	112					0	0	1	0	0
SIRPG	55423	broad.mit.edu	37	20	1616936	1616936	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1616936C>T	uc002wfm.1	-	3	711	c.646G>A	c.(646-648)GAC>AAC	p.D216N	SIRPG_uc002wfn.1_Missense_Mutation_p.D216N|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	216	Extracellular (Potential).|Ig-like C1-type 1.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						TCCCAGGGGTCCAGTACCACC	0.597													34	86					0	0	1	0	0
SIRPA	140885	broad.mit.edu	37	20	1903152	1903152	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1903152C>T	uc002wfq.2	+	5	1308	c.948C>T	c.(946-948)CTC>CTT	p.L316L	SIRPA_uc010zps.1_Silent_p.L296L|SIRPA_uc002wfr.2_Silent_p.L316L|SIRPA_uc002wfs.2_Silent_p.L316L|SIRPA_uc002wft.2_Silent_p.L316L	NM_001040022	NP_001035111	P78324	SHPS1_HUMAN	signal-regulatory protein alpha precursor	316	Ig-like C1-type 2.|Extracellular (Potential).				blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding			ovary(1)	1				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		TGAGCTGGCTCCTGGTGAATG	0.547													45	73					0	0	1	0	0
PDYN	5173	broad.mit.edu	37	20	1961116	1961116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1961116G>A	uc010gaj.2	-	3	860	c.618C>T	c.(616-618)CGC>CGT	p.R206R	uc002wfu.1_Intron|PDYN_uc002wfv.2_Silent_p.R206R|PDYN_uc010zpt.1_Silent_p.R51R	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	206					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						AGCCCCCATAGCGTTTGTACA	0.592													53	138					0	0	1	0	0
PDYN	5173	broad.mit.edu	37	20	1961398	1961398	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1961398G>A	uc010gaj.2	-	3	578	c.336C>T	c.(334-336)CTC>CTT	p.L112L	uc002wfu.1_Intron|PDYN_uc002wfv.2_Silent_p.L112L|PDYN_uc010zpt.1_Intron	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	112					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						AGATACTTGGGAGAAACTTGC	0.552													38	72					0	0	1	0	0
PDYN	5173	broad.mit.edu	37	20	1963716	1963716	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:1963716C>T	uc010gaj.2	-	2	257	c.15G>A	c.(13-15)GGG>GGA	p.G5G	uc002wfu.1_Intron|PDYN_uc002wfv.2_Silent_p.G5G|PDYN_uc010zpt.1_Intron	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	5					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						CCAGGACCAGCCCCTGCCAGG	0.567													8	42					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2290852	2290852	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2290852G>A	uc002wfx.3	+	3	307	c.210G>A	c.(208-210)ACG>ACA	p.T70T		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	70					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	CGGCCATGACGAAGGCTGTGT	0.532													32	149					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2297749	2297749	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2297749G>A	uc002wfx.3	+	6	802	c.705G>A	c.(703-705)GGG>GGA	p.G235G		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	235					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TGCTTGCTGGGAATTGGAGCG	0.532													31	110					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2297770	2297770	+	Silent	SNP	C	T	T	rs139192773		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2297770C>T	uc002wfx.3	+	6	823	c.726C>T	c.(724-726)ACC>ACT	p.T242T		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	242					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	GCACTTACACCGGTGGCCGGG	0.537													35	112					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2298005	2298005	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2298005C>T	uc002wfx.3	+	7	954	c.857C>T	c.(856-858)TCT>TTT	p.S286F		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	286					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	GCGCTGCGGTCTTTGGGGATT	0.582													46	74					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2298088	2298088	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2298088G>A	uc002wfx.3	+	7	1037	c.940G>A	c.(940-942)GAC>AAC	p.D314N		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	314					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TGTGTACTACGACCCCATGGG	0.517													54	151					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2321209	2321209	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2321209C>T	uc002wfx.3	+	13	2161	c.2064C>T	c.(2062-2064)TCC>TCT	p.S688S		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	688					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	CCATGTTGTCCATCGATGTAG	0.587													24	75					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2375858	2375859	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2375858_2375859CC>TT	uc002wfy.1	+	3	261_262	c.200_201CC>TT	c.(199-201)GCC>GTT	p.A67V	TGM6_uc010gal.1_Missense_Mutation_p.A67V	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	67					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GCTTCTGAGGCCCTCCACACCA	0.584													9	27					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2377216	2377216	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2377216C>T	uc002wfy.1	+	4	550	c.489C>T	c.(487-489)ATC>ATT	p.I163I	TGM6_uc010gal.1_Silent_p.I163I	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	163					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	ACAGCGGCATCATCTTCCGAG	0.617													17	51					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2411133	2411133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2411133G>A	uc002wfy.1	+	11	1781	c.1720G>A	c.(1720-1722)GAA>AAA	p.E574K	TGM6_uc010gal.1_Missense_Mutation_p.E574K	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	574					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	TAAGTATAAAGAAGACCTGAC	0.458													42	96					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2413244	2413244	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2413244G>A	uc002wfy.1	+	13	2137	c.2076G>A	c.(2074-2076)CCG>CCA	p.P692P	TGM6_uc010gal.1_3'UTR	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	692					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	CTCACTTCCCGGACATCAAGG	0.592													38	117					0	0	1	0	0
SNRPB	6628	broad.mit.edu	37	20	2442431	2442431	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2442431G>T	uc002wfz.1	-	7	857	c.694C>A	c.(694-696)CCC>ACC	p.P232T	SNRPB_uc002wga.1_3'UTR|SNRPB_uc010zpv.1_3'UTR|SNRPB_uc002wgb.2_3'UTR	NM_198216	NP_937859	P14678	RSMB_HUMAN	small nuclear ribonucleoprotein polypeptide B/B'	232	Repeat-rich region.|				histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|protein binding|RNA binding			ovary(1)	1						ATTCCCGGGGGAGGGGGCCCT	0.547													25	69					3.73148e-12	3.74653e-12	1	1	0
SNRPB	6628	broad.mit.edu	37	20	2443865	2443865	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2443865G>A	uc002wfz.1	-	5	592	c.429C>T	c.(427-429)ACC>ACT	p.T143T	SNRPB_uc002wga.1_Silent_p.T143T|SNRPB_uc010zpv.1_Silent_p.T64T|SNRPB_uc002wgb.2_Silent_p.T143T|SNORD119_uc010gam.1_5'Flank	NM_198216	NP_937859	P14678	RSMB_HUMAN	small nuclear ribonucleoprotein polypeptide B/B'	143					histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|protein binding|RNA binding			ovary(1)	1						TTCCTTGTGGGGTCATCACCT	0.562													15	41					0	0	1	0	0
ZNF343	79175	broad.mit.edu	37	20	2464818	2464818	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2464818G>A	uc002wge.1	-	6	1277	c.789C>T	c.(787-789)CTC>CTT	p.L263L	ZNF343_uc010gao.1_Silent_p.L263L|ZNF343_uc002wgd.1_Silent_p.L173L	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343	263					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCTTCCCTAAGAGGGTCCTCG	0.433													18	99					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2539368	2539368	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2539368G>A	uc002wgf.1	+	3	364	c.349G>A	c.(349-351)GAA>AAA	p.E117K	TMC2_uc002wgg.1_Missense_Mutation_p.E101K|TMC2_uc010zpw.1_5'UTR|TMC2_uc010zpx.1_5'UTR	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	117	Arg/Asp/Glu/Lys-rich (highly charged).|Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CCCAAAGAGGGAAAAGGAGAT	0.652													4	25					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2542537	2542537	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2542537G>A	uc002wgf.1	+	4	450	c.435G>A	c.(433-435)GGG>GGA	p.G145G	TMC2_uc002wgg.1_Silent_p.G129G|TMC2_uc010zpw.1_5'UTR|TMC2_uc010zpx.1_5'UTR	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	145	Arg/Asp/Glu/Lys-rich (highly charged).|Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CCTCTGGTGGGGAGTCCCTGT	0.617													24	64					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2542543	2542544	+	Silent	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2542543_2542544CC>TT	uc002wgf.1	+	4	456_457	c.441_442CC>TT	c.(439-444)TCCCTG>TCTTTG	p.147_148SL>SL	TMC2_uc002wgg.1_Silent_p.131_132SL>SL|TMC2_uc010zpw.1_5'UTR|TMC2_uc010zpx.1_5'UTR	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	147_148	Arg/Asp/Glu/Lys-rich (highly charged).|Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						GTGGGGAGTCCCTGTCCGAGGA	0.609													24	65					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2573002	2573002	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2573002C>T	uc002wgf.1	+	8	896	c.881C>T	c.(880-882)CCT>CTT	p.P294L	TMC2_uc002wgg.1_Missense_Mutation_p.P278L|TMC2_uc010zpw.1_Missense_Mutation_p.P126L|TMC2_uc010zpx.1_Missense_Mutation_p.P125L	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	294	Extracellular (Potential).					integral to membrane				ovary(3)	3						AAGACAGTGCCTCGGGCTGAG	0.438													17	142					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2604948	2604948	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2604948G>A	uc002wgf.1	+	17	2227	c.2212G>A	c.(2212-2214)GAG>AAG	p.E738K	TMC2_uc002wgg.1_Missense_Mutation_p.E722K	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	738	Extracellular (Potential).					integral to membrane				ovary(3)	3						TGTCCTCCAAGAGACCATTGA	0.483													35	99					0	0	1	0	0
VPS16	64601	broad.mit.edu	37	20	2842728	2842728	+	Silent	SNP	C	T	T	rs141872607		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:2842728C>T	uc002whe.2	+	11	1071	c.1023C>T	c.(1021-1023)GCC>GCT	p.A341A	VPS16_uc002whh.2_5'Flank|PTPRA_uc002whj.2_5'Flank|VPS16_uc002whf.2_Intron|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_5'Flank|VPS16_uc002whi.2_5'Flank	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	341					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome		p.A341A(1)		ovary(2)|pancreas(1)|skin(1)	4						TCAAAATTGCCTCAATGGCCC	0.597													13	18					0	0	1	0	0
PTPRA	5786	broad.mit.edu	37	20	3002768	3002768	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3002768C>T	uc010zqd.1	+	14	1580	c.1263C>T	c.(1261-1263)GAC>GAT	p.D421D	PTPRA_uc002whj.2_Silent_p.D410D|PTPRA_uc002whk.2_Silent_p.D401D|PTPRA_uc002whl.2_Silent_p.D401D|PTPRA_uc002whm.2_Silent_p.D177D|PTPRA_uc002whn.2_Silent_p.D401D|PTPRA_uc002who.2_Silent_p.D73D	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	410	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).	Substrate (By similarity).			axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						GCTGGCCAGACTTTGGGGTGC	0.562													32	94					0	0	1	0	0
PTPRA	5786	broad.mit.edu	37	20	3016271	3016271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3016271C>T	uc010zqd.1	+	20	2311	c.1994C>T	c.(1993-1995)TCC>TTC	p.S665F	PTPRA_uc002whj.2_Missense_Mutation_p.S654F|PTPRA_uc002whk.2_Missense_Mutation_p.S645F|PTPRA_uc002whl.2_Missense_Mutation_p.S645F|PTPRA_uc002whm.2_Missense_Mutation_p.S421F|PTPRA_uc002whn.2_Missense_Mutation_p.S645F|PTPRA_uc002who.2_Missense_Mutation_p.S317F	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	654	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						GGACTGGTGTCCTATGGAGAT	0.532													11	28					0	0	1	0	0
FASTKD5	60493	broad.mit.edu	37	20	3128799	3128799	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3128799G>A	uc002whz.2	-	2	1229	c.918C>T	c.(916-918)ATC>ATT	p.I306I	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	306					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						TATATTTAAGGATCAATGATT	0.358													34	88					0	0	1	0	0
FASTKD5	60493	broad.mit.edu	37	20	3129117	3129117	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3129117G>A	uc002whz.2	-	2	911	c.600C>T	c.(598-600)CTC>CTT	p.L200L	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	200					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						GGGTATCAAAGAGCTGTATCT	0.463													27	109					0	0	1	0	0
ProSAPiP1	9762	broad.mit.edu	37	20	3147736	3147736	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3147736G>A	uc002wia.1	-	1	1472	c.74C>T	c.(73-75)CCC>CTC	p.P25L	ProSAPiP1_uc002wib.1_Missense_Mutation_p.P25L	NM_014731	NP_055546	O60299	PRIP1_HUMAN	ProSAPiP1 protein	25						cell junction|cytoplasm|postsynaptic density|postsynaptic membrane				pancreas(1)	1						AAGCTCGGAGGGCCGTGGGGC	0.701													3	2					0	0	1	0	0
ITPA	3704	broad.mit.edu	37	20	3202495	3202495	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3202495C>T	uc002wid.2	+	7	562	c.420C>T	c.(418-420)ATC>ATT	p.I140I	ITPA_uc002wie.2_Silent_p.I123I|ITPA_uc002wif.2_RNA	NM_033453	NP_258412	Q9BY32	ITPA_HUMAN	inosine triphosphatase isoform a	140					nucleotide metabolic process	cytoplasm	metal ion binding|nucleoside-triphosphate diphosphatase activity|nucleotide binding			ovary(1)	1						AGGGCCGGATCGTGGCACCCA	0.592													16	23					0	0	1	0	0
SLC4A11	83959	broad.mit.edu	37	20	3211823	3211823	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3211823G>A	uc002wig.2	-	8	1110	c.1062C>T	c.(1060-1062)TTC>TTT	p.F354F	SLC4A11_uc010zqe.1_Silent_p.F381F|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.F338F	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	354	Cytoplasmic (Potential).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						GGTACAAGGGGAACCTGCGTG	0.602													41	145					0	0	1	0	0
SLC4A11	83959	broad.mit.edu	37	20	3212029	3212029	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3212029G>A	uc002wig.2	-	7	991	c.943C>T	c.(943-945)CCG>TCG	p.P315S	SLC4A11_uc010zqe.1_Missense_Mutation_p.P342S|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Missense_Mutation_p.P299S	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	315	Cytoplasmic (Potential).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						TTCGTTCTCGGCGCCACTGGA	0.662													25	53					0	0	1	0	0
C20orf194	25943	broad.mit.edu	37	20	3312936	3312936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3312936G>A	uc002wii.2	-	11	1105	c.1054C>T	c.(1054-1056)CCT>TCT	p.P352S	C20orf194_uc002wij.3_Missense_Mutation_p.P91S|C20orf194_uc002wik.2_Missense_Mutation_p.P26S|C20orf194_uc010gay.1_RNA	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	352											0						CCCAAGTAAGGAACATGAGTA	0.383													9	17					0	0	1	0	0
ATRN	8455	broad.mit.edu	37	20	3520891	3520891	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3520891C>T	uc002wim.2	+	3	607	c.517C>T	c.(517-519)CGT>TGT	p.R173C	ATRN_uc002wil.2_Missense_Mutation_p.R173C	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	173	Extracellular (Potential).|CUB.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						AATGAGACTTCGTTTCAATCA	0.308													52	234					0	0	1	0	0
ADAM33	80332	broad.mit.edu	37	20	3654066	3654066	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3654066G>A	uc002wit.2	-	11	1155	c.1068C>T	c.(1066-1068)GAC>GAT	p.D356D	ADAM33_uc002wir.1_Silent_p.D356D|ADAM33_uc002wis.2_5'UTR|ADAM33_uc002wiu.2_Silent_p.D356D|uc002wiv.1_5'Flank|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Intron|ADAM33_uc010zqg.1_Silent_p.D368D|ADAM33_uc010zqh.1_Missense_Mutation_p.T382I	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	356	Extracellular (Potential).|Peptidase M12B.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						AGCCGTCGGGGTCGTGGCTGA	0.766													5	5					0	0	1	0	0
ADAM33	80332	broad.mit.edu	37	20	3655674	3655674	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3655674C>T	uc002wit.2	-	4	420	c.333G>A	c.(331-333)ACG>ACA	p.T111T	ADAM33_uc002wir.1_Silent_p.T111T|ADAM33_uc002wis.2_5'Flank|ADAM33_uc002wiu.2_Silent_p.T111T|ADAM33_uc002wiw.1_RNA|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Silent_p.T110T|ADAM33_uc010zqg.1_Silent_p.T110T|ADAM33_uc010zqh.1_Silent_p.T111T	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	111	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						AGCATCTCACCGTGTGGTTGG	0.622													6	34					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3670728	3670728	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3670728G>A	uc002wja.2	-	18	4775	c.4775C>T	c.(4774-4776)TCC>TTC	p.S1592F	SIGLEC1_uc002wjb.1_Missense_Mutation_p.S231F|SIGLEC1_uc002wiz.3_Missense_Mutation_p.S1592F	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	1592	Ig-like C2-type 16.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GGCATTGGGGGAAGCCAGGAC	0.632													5	15					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3673312	3673312	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3673312G>A	uc002wja.2	-	15	3886	c.3886C>T	c.(3886-3888)CAC>TAC	p.H1296Y	SIGLEC1_uc002wjb.1_5'UTR|SIGLEC1_uc002wiz.3_Missense_Mutation_p.H1296Y	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	1296	Ig-like C2-type 13.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CGACCGTTGTGGTACCAAGTA	0.647													14	36					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3674315	3674315	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3674315G>A	uc002wja.2	-	13	3287	c.3287C>T	c.(3286-3288)ACC>ATC	p.T1096I	SIGLEC1_uc002wjb.1_5'Flank|SIGLEC1_uc002wiz.3_Missense_Mutation_p.T1096I	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	1096	Ig-like C2-type 11.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CTCCCGCACGGTAGCCCCGGG	0.647													10	30					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3675093	3675093	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3675093G>A	uc002wja.2	-	12	3031	c.3031C>T	c.(3031-3033)CCT>TCT	p.P1011S	SIGLEC1_uc002wjb.1_5'Flank|SIGLEC1_uc002wiz.3_Missense_Mutation_p.P1011S	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	1011	Ig-like C2-type 10.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						TGGGCCGGAGGGTCACTGTCC	0.672													6	18					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3675457	3675458	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3675457_3675458CC>TT	uc002wja.2	-	11	2796_2797	c.2796_2797GG>AA	c.(2794-2799)CGGGAT>CGAAAT	p.D933N	SIGLEC1_uc002wjb.1_5'Flank|SIGLEC1_uc002wiz.3_Missense_Mutation_p.D933N	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	933	Ig-like C2-type 9.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GGCTGGCCATCCCGATACCAAC	0.614													26	56					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3677394	3677394	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3677394C>T	uc002wja.2	-	10	2522	c.2522G>A	c.(2521-2523)GGT>GAT	p.G841D	SIGLEC1_uc002wiz.3_Missense_Mutation_p.G841D	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	841	Ig-like C2-type 8.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GACCTGGGGACCCAGGCTGGT	0.637													13	64					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3677847	3677847	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3677847G>A	uc002wja.2	-	9	2265	c.2265C>T	c.(2263-2265)CCC>CCT	p.P755P	SIGLEC1_uc002wiz.3_Silent_p.P755P	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	755	Ig-like C2-type 7.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CGGTCTCCAGGGGACCCTGGG	0.632													24	58					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3678588	3678588	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3678588G>A	uc002wja.2	-	8	1979	c.1979C>T	c.(1978-1980)TCC>TTC	p.S660F	SIGLEC1_uc002wiz.3_Missense_Mutation_p.S660F	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	660	Ig-like C2-type 6.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CATGCGTGGGGAACAGCCCCC	0.622													32	74					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3679990	3679990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3679990C>T	uc002wja.2	-	7	1645	c.1645G>A	c.(1645-1647)GGA>AGA	p.G549R	SIGLEC1_uc002wiz.3_Missense_Mutation_p.G549R	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	549	Ig-like C2-type 5.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						AGCAGGGCTCCATTCAGGTAC	0.687													5	16					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3686422	3686423	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3686422_3686423CC>TT	uc002wja.2	-	3	674_675	c.674_675GG>AA	c.(673-675)AGG>AAA	p.R225K	SIGLEC1_uc002wiz.3_Missense_Mutation_p.R225K|SIGLEC1_uc002wjc.2_Missense_Mutation_p.R136K	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	225	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CGCTCTGAGCCCTGTGATTGGC	0.629													29	72					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3687253	3687253	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:3687253C>T	uc002wja.2	-	2	150	c.150G>A	c.(148-150)GAG>GAA	p.E50E	SIGLEC1_uc002wiz.3_Silent_p.E50E|SIGLEC1_uc002wjc.2_5'UTR	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	50	Ig-like V-type.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CGTCGGGCACCTCCACGTCGG	0.667													3	12					0	0	1	0	0
SMOX	54498	broad.mit.edu	37	20	4162831	4162831	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:4162831C>T	uc002wkm.1	+	5	906	c.705C>T	c.(703-705)ATC>ATT	p.I235I	SMOX_uc002wkk.1_Silent_p.I235I|SMOX_uc002wkl.1_Silent_p.I235I|SMOX_uc002wkn.1_Intron|SMOX_uc002wkp.2_Silent_p.I235I|SMOX_uc010zqo.1_Silent_p.I212I|SMOX_uc002wko.1_Silent_p.I235I	NM_175839	NP_787033	Q9NWM0	SMOX_HUMAN	spermine oxidase isoform 1	235					polyamine biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	polyamine oxidase activity			breast(1)	1					Spermine(DB00127)	ACCACATCATCCCCTCGGGCT	0.647													28	42					0	0	1	0	0
ADRA1D	146	broad.mit.edu	37	20	4228965	4228966	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:4228965_4228966CC>TT	uc002wkr.2	-	1	694_695	c.639_640GG>AA	c.(637-642)GCGGCC>GCAACC	p.A214T		NM_000678	NP_000669	P25100	ADA1D_HUMAN	alpha-1D-adrenergic receptor	214	Helical; Name=4; (By similarity).				cell proliferation|cell-cell signaling|DNA metabolic process|G-protein signaling, coupled to cAMP nucleotide second messenger|multicellular organismal development|positive regulation of cell proliferation	integral to plasma membrane	alpha1-adrenergic receptor activity				0					Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Methotrimeprazine(DB01403)|Norepinephrine(DB00368)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)	AGGATGGCGGCCGCCTTGCGCT	0.688													4	6					0	0	1	0	0
ADRA1D	146	broad.mit.edu	37	20	4229251	4229251	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:4229251G>A	uc002wkr.2	-	1	409	c.354C>T	c.(352-354)ATC>ATT	p.I118I		NM_000678	NP_000669	P25100	ADA1D_HUMAN	alpha-1D-adrenergic receptor	118	Helical; Name=1; (By similarity).				cell proliferation|cell-cell signaling|DNA metabolic process|G-protein signaling, coupled to cAMP nucleotide second messenger|multicellular organismal development|positive regulation of cell proliferation	integral to plasma membrane	alpha1-adrenergic receptor activity				0					Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Methotrimeprazine(DB01403)|Norepinephrine(DB00368)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)	CCACTGAGAGGATGACAAGCA	0.458													7	32					0	0	1	0	0
PRNT	149830	broad.mit.edu	37	20	4713310	4713310	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:4713310G>A	uc002wlb.2	-	2		c.714C>T			PRNT_uc010zqp.1_RNA|PRNT_uc010zqq.1_RNA	NR_024268				Homo sapiens mRNA for putative M8 protein, isoform 2.												0						aagaaaacaagactatgctgc	0													6	12					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5282896	5282896	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5282896G>A	uc010zqw.1	-	2	945	c.945C>T	c.(943-945)TTC>TTT	p.F315F	PROKR2_uc010zqx.1_Silent_p.F315F|PROKR2_uc010zqy.1_Silent_p.F315F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	315	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CGACCACGTAGAAGGCAGTGA	0.517										HNSCC(71;0.22)			15	132					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5282933	5282933	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5282933G>A	uc010zqw.1	-	2	908	c.908C>T	c.(907-909)ACT>ATT	p.T303I	PROKR2_uc010zqx.1_Missense_Mutation_p.T303I|PROKR2_uc010zqy.1_Missense_Mutation_p.T303I	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	303	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CACGAACACAGTGGGGAAGAA	0.552										HNSCC(71;0.22)			44	65					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5283061	5283061	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5283061C>T	uc010zqw.1	-	2	780	c.780G>A	c.(778-780)ACG>ACA	p.T260T	PROKR2_uc010zqx.1_Silent_p.T260T|PROKR2_uc010zqy.1_Silent_p.T260T	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	260	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GAATCTGCTCCGTCTGGAACC	0.607										HNSCC(71;0.22)			22	55					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5283101	5283101	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5283101G>A	uc010zqw.1	-	2	740	c.740C>T	c.(739-741)TCC>TTC	p.S247F	PROKR2_uc010zqx.1_Missense_Mutation_p.S247F|PROKR2_uc010zqy.1_Missense_Mutation_p.S247F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	247	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GAGCTCCCGGGAGATCCTGGC	0.582										HNSCC(71;0.22)			25	60					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5294911	5294911	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5294911G>A	uc010zqw.1	-	1	105	c.105C>T	c.(103-105)CTC>CTT	p.L35L	PROKR2_uc010zqx.1_Silent_p.L35L|PROKR2_uc010zqy.1_Silent_p.L35L|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	35	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CATCCATAGGGAGGTCATAAT	0.517										HNSCC(71;0.22)			16	91					0	0	1	0	0
GPCPD1	56261	broad.mit.edu	37	20	5528378	5528378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5528378G>A	uc002wme.3	-	20	2161	c.1948C>T	c.(1948-1950)CCC>TCC	p.P650S	GPCPD1_uc002wmd.3_Missense_Mutation_p.P469S	NM_019593	NP_062539	Q9NPB8	GPCP1_HUMAN	hypothetical protein LOC56261	650					glycerol metabolic process|lipid metabolic process		carbohydrate binding|glycerophosphodiester phosphodiesterase activity				0						AAAGATGAGGGAACAAAGCGG	0.458													65	132					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5903019	5903019	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5903019G>A	uc002wmg.2	+	4	535	c.229G>A	c.(229-231)GAA>AAA	p.E77K	CHGB_uc010zqz.1_Intron	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	77						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						AACTGAAAATGAAAACACAAA	0.458													29	68					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5903153	5903153	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5903153G>A	uc002wmg.2	+	4	669	c.363G>A	c.(361-363)GAG>GAA	p.E121E	CHGB_uc010zqz.1_Intron	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	121						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CAGACACAGAGAAATGGGCAG	0.627													21	22					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5903942	5903942	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5903942G>A	uc002wmg.2	+	4	1458	c.1152G>A	c.(1150-1152)GAG>GAA	p.E384E	CHGB_uc010zqz.1_Silent_p.E67E	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	384						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GGGATGAGGAGGACAAGAGAA	0.552													27	125					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5904282	5904282	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:5904282G>A	uc002wmg.2	+	4	1798	c.1492G>A	c.(1492-1494)GAA>AAA	p.E498K	CHGB_uc010zqz.1_Missense_Mutation_p.E181K	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	498						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						AAACAGGGAGGAAGCTAGGTT	0.488													28	62					0	0	1	0	0
LRRN4	164312	broad.mit.edu	37	20	6022130	6022130	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6022130C>T	uc002wmo.2	-	5	1985	c.1761G>A	c.(1759-1761)GGG>GGA	p.G587G		NM_152611	NP_689824	Q8WUT4	LRRN4_HUMAN	leucine rich repeat neuronal 4 precursor	587	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				skin(3)	3						TCTCCGTCACCCCCTGCAGCC	0.711													28	60					0	0	1	0	0
LRRN4	164312	broad.mit.edu	37	20	6022607	6022607	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6022607C>T	uc002wmo.2	-	5	1508	c.1284G>A	c.(1282-1284)GGG>GGA	p.G428G		NM_152611	NP_689824	Q8WUT4	LRRN4_HUMAN	leucine rich repeat neuronal 4 precursor	428	Extracellular (Potential).					integral to membrane				skin(3)	3						AGGGGGCAGTCCCCTCCCGTG	0.657													20	41					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6065875	6065875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6065875C>T	uc002wmr.2	-	12	2220	c.1431G>A	c.(1429-1431)ATG>ATA	p.M477I	FERMT1_uc002wmq.2_Missense_Mutation_p.M30I|FERMT1_uc010gbt.2_Missense_Mutation_p.M220I	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	477	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						AGCTGTCTGCCATGGTTTTGC	0.493													17	64					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6091063	6091063	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6091063G>A	uc002wmr.2	-	5	1417	c.628C>T	c.(628-630)CCT>TCT	p.P210S	FERMT1_uc010gbt.2_Intron|FERMT1_uc002wms.2_Missense_Mutation_p.P210S|FERMT1_uc002wmt.2_5'Flank	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	210	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						TCCGTCAAAGGGCTGTCACTG	0.498													43	81					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6091073	6091073	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6091073G>A	uc002wmr.2	-	5	1407	c.618C>T	c.(616-618)TTC>TTT	p.F206F	FERMT1_uc010gbt.2_Intron|FERMT1_uc002wms.2_Silent_p.F206F|FERMT1_uc002wmt.2_5'Flank	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	206	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						GGCTGTCACTGAACCAAGTCA	0.522													27	105					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6093215	6093215	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6093215C>T	uc002wmr.2	-	4	1230	c.441G>A	c.(439-441)AAG>AAA	p.K147K	FERMT1_uc010gbt.2_5'UTR|FERMT1_uc002wms.2_Silent_p.K147K	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	147	Poly-Lys.|FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						TCTTCTTCTTCTTAAAATAGT	0.299													28	102					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6096537	6096537	+	Silent	SNP	C	T	T	rs141850118	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6096537C>T	uc002wmr.2	-	3	1095	c.306G>A	c.(304-306)CCG>CCA	p.P102P	FERMT1_uc010gbt.2_5'UTR|FERMT1_uc002wms.2_Silent_p.P102P	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	102	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						TCTTCAAATTCGGCAGACGAA	0.498													40	90					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6096664	6096664	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6096664G>A	uc002wmr.2	-	3	968	c.179C>T	c.(178-180)GCT>GTT	p.A60V	FERMT1_uc010gbt.2_5'UTR|FERMT1_uc002wms.2_Missense_Mutation_p.A60V	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	60					cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						CCACCAAAGAGCAAAGTCTGA	0.493													15	37					0	0	1	0	0
BMP2	650	broad.mit.edu	37	20	6750866	6750866	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6750866G>A	uc002wmu.1	+	2	878	c.93G>A	c.(91-93)AGG>AGA	p.R31R		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	31					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	TGGGCCGCAGGAAGTTCGCGG	0.692													6	8					0	0	1	0	0
BMP2	650	broad.mit.edu	37	20	6750959	6750959	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6750959C>T	uc002wmu.1	+	2	971	c.186C>T	c.(184-186)GGC>GGT	p.G62G		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	62					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	GCATGTTCGGCCTGAAACAGA	0.682													7	27					0	0	1	0	0
BMP2	650	broad.mit.edu	37	20	6759299	6759299	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6759299C>T	uc002wmu.1	+	3	1539	c.754C>T	c.(754-756)CAA>TAA	p.Q252*		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	252					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	GTCTTTGCACCAAGATGAACA	0.483													10	31					0	0	1	0	0
BMP2	650	broad.mit.edu	37	20	6759655	6759655	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6759655G>A	uc002wmu.1	+	3	1895	c.1110G>A	c.(1108-1110)TCG>TCA	p.S370S		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	370					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	GTGCTATCTCGATGCTGTACC	0.423													15	50					0	0	1	0	0
BMP2	650	broad.mit.edu	37	20	6759682	6759682	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:6759682G>A	uc002wmu.1	+	3	1922	c.1137G>A	c.(1135-1137)AAG>AAA	p.K379K		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	379					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	AGAATGAAAAGGTTGTATTAA	0.368													19	44					0	0	1	0	0
HAO1	54363	broad.mit.edu	37	20	7866409	7866409	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:7866409G>A	uc002wmw.1	-	6	940	c.916C>T	c.(916-918)CTT>TTT	p.L306F	HAO1_uc010gbu.2_Missense_Mutation_p.L306F	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	306	FMN hydroxy acid dehydrogenase.|FMN (By similarity).				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						TTGGCGCCAAGAGCCAGAGCT	0.488													63	185					0	0	1	0	0
HAO1	54363	broad.mit.edu	37	20	7875820	7875820	+	Missense_Mutation	SNP	G	A	A	rs139675589		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:7875820G>A	uc002wmw.1	-	5	797	c.773C>T	c.(772-774)TCG>TTG	p.S258L	HAO1_uc010gbu.2_Missense_Mutation_p.S258L	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	258	FMN hydroxy acid dehydrogenase.	FMN.			cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						CCCATGATTCGACACCAAGAT	0.483													33	71					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8637897	8637897	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:8637897C>T	uc002wnb.2	+	8	664	c.661C>T	c.(661-663)CCT>TCT	p.P221S	PLCB1_uc010zrb.1_Missense_Mutation_p.P120S|PLCB1_uc002wna.2_Missense_Mutation_p.P221S|PLCB1_uc002wnc.1_Missense_Mutation_p.P120S	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	221				P -> L (in Ref. 2; AAF86613).	activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CAACCTTTGCCCTCGACCTGA	0.388													15	131					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8665652	8665652	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:8665652G>A	uc002wnb.2	+	10	939	c.936G>A	c.(934-936)CTG>CTA	p.L312L	PLCB1_uc010zrb.1_Silent_p.L211L|PLCB1_uc002wna.2_Silent_p.L312L|PLCB1_uc002wnc.1_Silent_p.L211L	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	312					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CTGAGAAACTGGATTTGAATG	0.413													72	153					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8689378	8689378	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:8689378C>T	uc002wnb.2	+	12	1232	c.1229C>T	c.(1228-1230)TCG>TTG	p.S410L	PLCB1_uc010zrb.1_Missense_Mutation_p.S309L|PLCB1_uc002wna.2_Missense_Mutation_p.S410L|PLCB1_uc002wnc.1_Missense_Mutation_p.S309L	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	410	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						ATTCTCCTTTCGTTTGAGAAC	0.358													21	36					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8698473	8698473	+	Silent	SNP	C	T	T	rs145869401	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:8698473C>T	uc002wnb.2	+	14	1494	c.1491C>T	c.(1489-1491)TTC>TTT	p.F497F	PLCB1_uc010zrb.1_Silent_p.F396F|PLCB1_uc002wna.2_Silent_p.F497F|PLCB1_uc002wnc.1_Silent_p.F396F|PLCB1_uc002wnd.1_Silent_p.F74F	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	497					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CCAGCATGTTCGAGCCCTCAT	0.458													13	43					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8755350	8755350	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:8755350G>A	uc002wnb.2	+	27	3098	c.3095G>A	c.(3094-3096)CGA>CAA	p.R1032Q	PLCB1_uc010zrb.1_Missense_Mutation_p.R931Q|PLCB1_uc002wna.2_Missense_Mutation_p.R1032Q|PLCB1_uc002wnc.1_Missense_Mutation_p.R931Q|PLCB1_uc002wnd.1_Missense_Mutation_p.R609Q	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1032					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TACCAGAAGCGAGAACATATT	0.373													25	74					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9352995	9352995	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9352995G>A	uc002wnf.2	+	10	767	c.631G>A	c.(631-633)GAA>AAA	p.E211K	PLCB4_uc010gbw.1_Missense_Mutation_p.E211K|PLCB4_uc010gbx.2_Missense_Mutation_p.E211K|PLCB4_uc002wne.2_Missense_Mutation_p.E211K|PLCB4_uc002wnh.2_Missense_Mutation_p.E58K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	211					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AAAGTTCTATGAACTGACACA	0.338													13	83					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9364963	9364963	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9364963C>T	uc002wnf.2	+	13	1105	c.969C>T	c.(967-969)TTC>TTT	p.F323F	PLCB4_uc010gbw.1_Silent_p.F323F|PLCB4_uc010gbx.2_Silent_p.F323F|PLCB4_uc002wne.2_Silent_p.F323F|PLCB4_uc002wnh.2_Silent_p.F170F	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	323	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CTCACTACTTCATCAGTTCTT	0.468													36	94					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9370586	9370586	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9370586T>C	uc002wnf.2	+	15	1355	c.1219T>C	c.(1219-1221)TCC>CCC	p.S407P	PLCB4_uc010gbw.1_Missense_Mutation_p.S407P|PLCB4_uc010gbx.2_Missense_Mutation_p.S407P|PLCB4_uc002wne.2_Missense_Mutation_p.S407P|PLCB4_uc002wnh.2_Missense_Mutation_p.S254P	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	407	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TGTAATTCTCTCCTTTGAAAA	0.368													27	93					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9371224	9371224	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9371224G>A	uc002wnf.2	+	16	1421	c.1285G>A	c.(1285-1287)GGG>AGG	p.G429R	PLCB4_uc010gbw.1_Missense_Mutation_p.G429R|PLCB4_uc010gbx.2_Missense_Mutation_p.G429R|PLCB4_uc002wne.2_Missense_Mutation_p.G429R|PLCB4_uc002wnh.2_Missense_Mutation_p.G276R	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	429	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AGATCTATTTGGGGATCTCCT	0.343													15	31					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9374249	9374249	+	Silent	SNP	G	A	A	rs1129249		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9374249G>A	uc002wnf.2	+	17	1474	c.1338G>A	c.(1336-1338)AGG>AGA	p.R446R	PLCB4_uc010gbw.1_Silent_p.R446R|PLCB4_uc010gbx.2_Silent_p.R446R|PLCB4_uc002wne.2_Silent_p.R446R|PLCB4_uc002wnh.2_Silent_p.R293R	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	446	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AACCAGGCAGGGCTTTGCCAT	0.453											OREG0025771	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	61					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9382181	9382181	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9382181G>A	uc002wnf.2	+	19	1691	c.1555G>A	c.(1555-1557)GAA>AAA	p.E519K	PLCB4_uc010gbw.1_Missense_Mutation_p.E519K|PLCB4_uc010gbx.2_Missense_Mutation_p.E519K|PLCB4_uc002wne.2_Missense_Mutation_p.E519K|PLCB4_uc002wnh.2_Missense_Mutation_p.E366K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	519					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ATTTGGAAATGAACTTTCTGC	0.458													18	30					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9389291	9389291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9389291C>T	uc002wnf.2	+	21	1901	c.1765C>T	c.(1765-1767)CAT>TAT	p.H589Y	PLCB4_uc010gbw.1_Missense_Mutation_p.H589Y|PLCB4_uc010gbx.2_Missense_Mutation_p.H601Y|PLCB4_uc002wne.2_Missense_Mutation_p.H589Y|PLCB4_uc002wnh.2_Missense_Mutation_p.H436Y	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	589	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ACGCAATATTCATTATAACAT	0.358													7	24					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9389741	9389741	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9389741G>A	uc002wnf.2	+	22	2012	c.1876G>A	c.(1876-1878)GGA>AGA	p.G626R	PLCB4_uc010gbw.1_Missense_Mutation_p.G626R|PLCB4_uc010gbx.2_Missense_Mutation_p.G638R|PLCB4_uc002wne.2_Missense_Mutation_p.G626R|PLCB4_uc002wnh.2_Missense_Mutation_p.G473R	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	626	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTACCCCAAGGGAGGCCGAGT	0.423													11	31					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9391729	9391729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9391729C>T	uc002wnf.2	+	23	2145	c.2009C>T	c.(2008-2010)TCG>TTG	p.S670L	PLCB4_uc010gbw.1_Missense_Mutation_p.S670L|PLCB4_uc010gbx.2_Missense_Mutation_p.S682L|PLCB4_uc002wne.2_Missense_Mutation_p.S670L|PLCB4_uc002wnh.2_Missense_Mutation_p.S517L	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	670	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TATAATGGATCGTGCGGGTGA	0.363													33	58					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9402046	9402046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9402046C>T	uc002wnf.2	+	25	2357	c.2221C>T	c.(2221-2223)CGC>TGC	p.R741C	PLCB4_uc010gbw.1_Missense_Mutation_p.R741C|PLCB4_uc010gbx.2_Missense_Mutation_p.R753C|PLCB4_uc002wne.2_Missense_Mutation_p.R741C|PLCB4_uc002wnh.2_Missense_Mutation_p.R588C	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	741	C2.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ATTCCGAACTCGCATGGTTAT	0.388													28	72					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9434089	9434089	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9434089G>A	uc002wnf.2	+	31	3076	c.2940G>A	c.(2938-2940)GAG>GAA	p.E980E	PLCB4_uc010gbw.1_Silent_p.E980E|PLCB4_uc010gbx.2_Silent_p.E992E|PLCB4_uc002wne.2_Silent_p.E980E|PLCB4_uc002wnh.2_Silent_p.E827E	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	980					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AAATCCTAGAGAAGGCAATGA	0.388													8	76					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9449315	9449315	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9449315G>A	uc002wnf.2	+	34	3446	c.3310G>A	c.(3310-3312)GAA>AAA	p.E1104K	PLCB4_uc010gbx.2_Missense_Mutation_p.E1116K|PLCB4_uc002wne.2_Missense_Mutation_p.E1104K|PLCB4_uc002wnh.2_Missense_Mutation_p.E951K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1104					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AGCAGAACGGGAAAGGTAAGT	0.418													32	68					0	0	1	0	0
C20orf103	24141	broad.mit.edu	37	20	9498830	9498830	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9498830C>T	uc002wni.1	+	5	848	c.619C>T	c.(619-621)CAC>TAC	p.H207Y	C20orf103_uc010zrc.1_Missense_Mutation_p.H163Y	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	207	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			GTCTGCGGTCCACATCCAACC	0.483													5	78					0	0	1	0	0
C20orf103	24141	broad.mit.edu	37	20	9510422	9510422	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9510422G>A	uc002wni.1	+	6	1027	c.798G>A	c.(796-798)CAG>CAA	p.Q266Q	C20orf103_uc010zrc.1_Silent_p.Q222Q	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	266	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			CTGCCAACCAGGTGCAGATCC	0.547													13	71					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9523353	9523354	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9523353_9523354GG>AA	uc002wnl.2	-	10	2428_2429	c.1883_1884CC>TT	c.(1882-1884)TCC>TTT	p.S628F	PAK7_uc002wnk.2_Missense_Mutation_p.S628F|PAK7_uc002wnj.2_Missense_Mutation_p.S628F|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	628	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TGATCCCGAGGGACCAGATGTC	0.515													19	76					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9560897	9560897	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9560897C>T	uc002wnl.2	-	5	1430	c.885G>A	c.(883-885)CCG>CCA	p.P295P	PAK7_uc002wnk.2_Silent_p.P295P|PAK7_uc002wnj.2_Silent_p.P295P|PAK7_uc010gby.1_Silent_p.P295P	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	295	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ATGGCATCATCGGTTCCTGGA	0.542													52	139					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9560965	9560965	+	Silent	SNP	G	A	A	rs142086015		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9560965G>A	uc002wnl.2	-	5	1362	c.817C>T	c.(817-819)CTG>TTG	p.L273L	PAK7_uc002wnk.2_Silent_p.L273L|PAK7_uc002wnj.2_Silent_p.L273L|PAK7_uc010gby.1_Silent_p.L273L	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	273	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GTCTGATTCAGGTACGAAGAC	0.567													35	90					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9561151	9561151	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9561151C>T	uc002wnl.2	-	5	1176	c.631G>A	c.(631-633)GAA>AAA	p.E211K	PAK7_uc002wnk.2_Missense_Mutation_p.E211K|PAK7_uc002wnj.2_Missense_Mutation_p.E211K|PAK7_uc010gby.1_Missense_Mutation_p.E211K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	211	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TCACTGTATTCACTTGGTTTG	0.483													39	75					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9561313	9561313	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9561313C>T	uc002wnl.2	-	5	1014	c.469G>A	c.(469-471)GAT>AAT	p.D157N	PAK7_uc002wnk.2_Missense_Mutation_p.D157N|PAK7_uc002wnj.2_Missense_Mutation_p.D157N|PAK7_uc010gby.1_Missense_Mutation_p.D157N	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	157	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TAATACGGATCCAGATCATCT	0.483													60	166					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9561350	9561350	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9561350T>A	uc002wnl.2	-	5	977	c.432A>T	c.(430-432)GAA>GAT	p.E144D	PAK7_uc002wnk.2_Missense_Mutation_p.E144D|PAK7_uc002wnj.2_Missense_Mutation_p.E144D|PAK7_uc010gby.1_Missense_Mutation_p.E144D	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	144	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CCCTGTACTTTTCGGTCGTGT	0.512													80	153					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9561352	9561352	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9561352C>T	uc002wnl.2	-	5	975	c.430G>A	c.(430-432)GAA>AAA	p.E144K	PAK7_uc002wnk.2_Missense_Mutation_p.E144K|PAK7_uc002wnj.2_Missense_Mutation_p.E144K|PAK7_uc010gby.1_Missense_Mutation_p.E144K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	144	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CTGTACTTTTCGGTCGTGTAG	0.512													41	190					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9624925	9624925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:9624925C>T	uc002wnl.2	-	4	597	c.52G>A	c.(52-54)GAA>AAA	p.E18K	PAK7_uc002wnk.2_Missense_Mutation_p.E18K|PAK7_uc002wnj.2_Missense_Mutation_p.E18K|PAK7_uc010gby.1_Missense_Mutation_p.E18K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	18	CRIB.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ACCCTGTGTTCAAAGTTGGAC	0.448													31	87					0	0	1	0	0
ANKRD5	63926	broad.mit.edu	37	20	10032366	10032366	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:10032366C>T	uc002wno.2	+	8	2092	c.1699C>T	c.(1699-1701)CAT>TAT	p.H567Y	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.H567Y|ANKRD5_uc010gbz.2_Missense_Mutation_p.H378Y	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	567	ANK 6.						calcium ion binding			ovary(1)|breast(1)	2						TTTTGCATGCCATGCAGGCCA	0.368													18	68					0	0	1	0	0
ANKRD5	63926	broad.mit.edu	37	20	10033879	10033879	+	Missense_Mutation	SNP	C	T	T	rs150596900		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:10033879C>T	uc002wno.2	+	9	2383	c.1990C>T	c.(1990-1992)CCT>TCT	p.P664S	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.P664S|ANKRD5_uc010gbz.2_Missense_Mutation_p.P475S	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	664							calcium ion binding			ovary(1)|breast(1)	2						AGGCAAGACACCTCCTATACT	0.348													21	113					0	0	1	0	0
SNAP25	6616	broad.mit.edu	37	20	10279981	10279981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:10279981G>A	uc002wnq.1	+	7	685	c.473G>A	c.(472-474)GGG>GAG	p.G158E	SNAP25_uc002wnr.1_Missense_Mutation_p.G158E|SNAP25_uc002wns.1_Missense_Mutation_p.G95E|SNAP25_uc010gca.1_Missense_Mutation_p.G158E|SNAP25_uc010gcb.1_Missense_Mutation_p.G95E|SNAP25_uc010gcc.1_Missense_Mutation_p.G52E	NM_130811	NP_570824	P60880	SNP25_HUMAN	synaptosomal-associated protein 25 isoform	158	t-SNARE coiled-coil homology 2.				energy reserve metabolic process|glutamate secretion|neurotransmitter uptake|synaptic vesicle docking involved in exocytosis	cell junction|growth cone|perinuclear region of cytoplasm|synapse|synaptosome				skin(2)	2					Botulinum Toxin Type A(DB00083)	GGCATCATCGGGAACCTCCGT	0.502													38	141					0	0	1	0	0
MKKS	8195	broad.mit.edu	37	20	10393290	10393290	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:10393290G>A	uc002wnt.1	-	3	1760	c.873C>T	c.(871-873)GTC>GTT	p.V291V	MKKS_uc002wnu.1_Silent_p.V291V|MKKS_uc010zrd.1_Intron	NM_018848	NP_061336	Q9NPJ1	MKKS_HUMAN	McKusick-Kaufman syndrome protein	291	Substrate-binding apical domain.				brain morphogenesis|cerebral cortex development|convergent extension involved in gastrulation|detection of mechanical stimulus involved in sensory perception of sound|fat cell differentiation|flagellum assembly|gonad development|heart looping|hippocampus development|intracellular transport|melanosome transport|photoreceptor cell maintenance|pigment granule aggregation in cell center|protein folding|regulation of cilium beat frequency involved in ciliary motility|sensory perception of smell|social behavior|spermatid development|striatum development	cytosol|microtubule organizing center|motile cilium	ATP binding|unfolded protein binding				0						TTTGGCACAGGACAAGATCTA	0.438									Bardet-Biedl_syndrome				30	80					0	0	1	0	0
MKKS	8195	broad.mit.edu	37	20	10393713	10393713	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:10393713G>A	uc002wnt.1	-	3	1337	c.450C>T	c.(448-450)CTC>CTT	p.L150L	MKKS_uc002wnu.1_Silent_p.L150L|MKKS_uc010zrd.1_Intron	NM_018848	NP_061336	Q9NPJ1	MKKS_HUMAN	McKusick-Kaufman syndrome protein	150					brain morphogenesis|cerebral cortex development|convergent extension involved in gastrulation|detection of mechanical stimulus involved in sensory perception of sound|fat cell differentiation|flagellum assembly|gonad development|heart looping|hippocampus development|intracellular transport|melanosome transport|photoreceptor cell maintenance|pigment granule aggregation in cell center|protein folding|regulation of cilium beat frequency involved in ciliary motility|sensory perception of smell|social behavior|spermatid development|striatum development	cytosol|microtubule organizing center|motile cilium	ATP binding|unfolded protein binding				0						CCAAACAAAGGAGGATCTGAG	0.408									Bardet-Biedl_syndrome				34	83					0	0	1	0	0
C20orf94	128710	broad.mit.edu	37	20	10579331	10579331	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:10579331T>A	uc010zre.1	+	5	427	c.247T>A	c.(247-249)TTT>ATT	p.F83I		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	83							protein binding				0						AGGTTATGGCTTTCAAATCAC	0.318													8	58					0	0	1	0	0
C20orf94	128710	broad.mit.edu	37	20	10603749	10603749	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:10603749C>T	uc010zre.1	+	8	1129	c.949C>T	c.(949-951)CGA>TGA	p.R317*		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	317							protein binding				0						TGGAAGTGATCGATTAGTCCC	0.458													33	125					0	0	1	0	0
BTBD3	22903	broad.mit.edu	37	20	11903963	11903963	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:11903963C>T	uc002wnz.2	+	4	1577	c.1218C>T	c.(1216-1218)TTC>TTT	p.F406F	BTBD3_uc002wny.2_Silent_p.F345F|BTBD3_uc002woa.2_Silent_p.F345F|BTBD3_uc010zrf.1_Silent_p.F255F|BTBD3_uc010zrg.1_Silent_p.F255F|BTBD3_uc010zrh.1_Silent_p.F255F	NM_014962	NP_055777	Q9Y2F9	BTBD3_HUMAN	BTB/POZ domain containing protein 3 isoform a	406										ovary(2)|central_nervous_system(1)	3						AAAGAGTGTTCATTGCTGGCT	0.522													23	55					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	12989982	12989982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:12989982G>A	uc002wod.1	+	1	356	c.67G>A	c.(67-69)GGC>AGC	p.G23S	SPTLC3_uc002wob.1_RNA|SPTLC3_uc002woc.2_Missense_Mutation_p.G23S	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	23					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	ACAGAGCAATGGCTCACAAAG	0.483													17	85					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029625	13029625	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:13029625C>T	uc002wod.1	+	2	439	c.150C>T	c.(148-150)CTC>CTT	p.L50L	SPTLC3_uc002woc.2_Silent_p.L50L	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	50					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	ATGATAAGCTCATTGTTGAAT	0.358													62	182					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029765	13029765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:13029765G>A	uc002wod.1	+	2	579	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	SPTLC3_uc002woc.2_Missense_Mutation_p.R97K	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	97					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GCTGTGGAAAGAAAAGAACAA	0.428													22	79					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13052931	13052931	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:13052931G>A	uc002wod.1	+	3	620	c.331G>A	c.(331-333)GAA>AAA	p.E111K		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	111					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	TCAAGACTTTGAAAATTTTTA	0.428													66	154					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13071780	13071780	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:13071780G>A	uc002wod.1	+	5	946	c.657G>A	c.(655-657)CTG>CTA	p.L219L		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	219					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	CTAAGTTCCTGAATGTGGAAG	0.428													15	137					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13098373	13098373	+	Splice_Site	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:13098373G>T	uc002wod.1	+	8	1441	c.1152_splice	c.e8+1	p.K384_splice		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base						sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	TGGAAGGAAGGTAAGAGAGGG	0.483													13	71					9.31168e-06	9.32666e-06	1	1	0
ISM1	140862	broad.mit.edu	37	20	13279769	13279769	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:13279769G>A	uc010gce.1	+	6	1064	c.1058G>A	c.(1057-1059)GGG>GAG	p.G353E	TASP1_uc010zri.1_Intron	NM_080826	NP_543016	B1AKI9	ISM1_HUMAN	isthmin 1 homolog precursor	353	AMOP.					extracellular region					0						GACGCCAGCGGGCCCAAGGAG	0.652													4	27					0	0	1	0	0
ESF1	51575	broad.mit.edu	37	20	13695737	13695737	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:13695737G>A	uc002woj.2	-	14	2448	c.2340C>T	c.(2338-2340)TTC>TTT	p.F780F		NM_016649	NP_057733	Q9H501	ESF1_HUMAN	ABT1-associated protein	780	Lys-rich.|Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				ovary(1)	1						TTGTTTTCTTGAAATTGGGAT	0.388													42	106					0	0	1	0	0
MACROD2	140733	broad.mit.edu	37	20	14066290	14066290	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:14066290C>T	uc002wou.2	+	3	451	c.187C>T	c.(187-189)CAG>TAG	p.Q63*	MACROD2_uc002wot.2_Nonsense_Mutation_p.Q63*	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	63	Macro.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				GGAAACATCCCAGGTGAAGAA	0.299													19	61					0	0	1	0	0
FLRT3	23767	broad.mit.edu	37	20	14306614	14306614	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:14306614G>A	uc002wov.1	-	3	2006	c.1539C>T	c.(1537-1539)CTC>CTT	p.L513L	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Silent_p.L513L	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	513	Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		GCTCTCGATTGAGGGTGGTTG	0.468													23	120					0	0	1	0	0
FLRT3	23767	broad.mit.edu	37	20	14306775	14306775	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:14306775C>T	uc002wov.1	-	3	1845	c.1378G>A	c.(1378-1380)GAA>AAA	p.E460K	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.E460K	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	460	Extracellular (Potential).|Fibronectin type-III.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		TCACTGCGTTCCCCTGTTACA	0.463													33	84					0	0	1	0	0
FLRT3	23767	broad.mit.edu	37	20	14307236	14307236	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:14307236G>A	uc002wov.1	-	3	1384	c.917C>T	c.(916-918)CCC>CTC	p.P306L	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.P306L	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	306	Extracellular (Potential).|LRRCT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		GCAATACCAGGGATTGTTGCG	0.438													37	77					0	0	1	0	0
FLRT3	23767	broad.mit.edu	37	20	14307789	14307789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:14307789C>T	uc002wov.1	-	3	831	c.364G>A	c.(364-366)GAT>AAT	p.D122N	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.D122N	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	122	Extracellular (Potential).|LRR 3.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		GAAAGTGAATCATAAGTGATA	0.358													49	118					0	0	1	0	0
MACROD2	140733	broad.mit.edu	37	20	15480430	15480430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:15480430G>A	uc002wou.2	+	8	847	c.583G>A	c.(583-585)GAG>AAG	p.E195K	MACROD2_uc002wot.2_Missense_Mutation_p.E195K|MACROD2_uc002woz.2_5'UTR	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	195	Macro.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				CTTTCCCAACGAGCCTGCTGC	0.443													22	54					0	0	1	0	0
MACROD2	140733	broad.mit.edu	37	20	16021923	16021923	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:16021923G>A	uc002wou.2	+	16	1495	c.1231G>A	c.(1231-1233)GTT>ATT	p.V411I	MACROD2_uc002wot.2_Missense_Mutation_p.A411T|MACROD2_uc002woz.2_Missense_Mutation_p.V176I|MACROD2_uc002wpb.2_Missense_Mutation_p.A176T|MACROD2_uc002wpd.2_Missense_Mutation_p.V62I	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	411											0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				AGGTCCTGATGGTAAGGTTCT	0.443													18	26					0	0	1	0	0
KIF16B	55614	broad.mit.edu	37	20	16385458	16385458	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:16385458C>T	uc002wpg.1	-	17	1942	c.1784G>A	c.(1783-1785)GGA>GAA	p.G595E	KIF16B_uc010gch.1_Missense_Mutation_p.G595E|KIF16B_uc010gci.1_Missense_Mutation_p.G595E|KIF16B_uc010gcj.1_Missense_Mutation_p.G595D	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	595	Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						GTTCACTCACCCGGGGTTATA	0.478													10	29					0	0	1	0	0
OTOR	56914	broad.mit.edu	37	20	16730641	16730641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:16730641G>A	uc002wpj.2	+	3	393	c.349G>A	c.(349-351)GAA>AAA	p.E117K	OTOR_uc002wpk.2_RNA	NM_020157	NP_064542	Q9NRC9	OTOR_HUMAN	otoraplin precursor	117					sensory perception of sound	extracellular region				ovary(1)|central_nervous_system(1)	2						AGCTACCAAGGAAGTTCCCAC	0.488													12	31					0	0	1	0	0
PCSK2	5126	broad.mit.edu	37	20	17434544	17434544	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:17434544C>T	uc002wpm.2	+	9	1363	c.1043C>T	c.(1042-1044)TCT>TTT	p.S348F	PCSK2_uc002wpl.2_Missense_Mutation_p.S329F|PCSK2_uc010zrm.1_Missense_Mutation_p.S313F	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	348	Catalytic.				enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GAGAGCTGCTCTTCCACCTTG	0.597													25	70					0	0	1	0	0
PCSK2	5126	broad.mit.edu	37	20	17446091	17446091	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:17446091C>T	uc002wpm.2	+	11	1643	c.1323C>T	c.(1321-1323)CTC>CTT	p.L441L	PCSK2_uc002wpl.2_Silent_p.L422L|PCSK2_uc010zrm.1_Silent_p.L406L|PCSK2_uc002wpn.2_Silent_p.L95L	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	441					enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTAATCACCTCTTTGGCTACG	0.557													16	40					0	0	1	0	0
PCSK2	5126	broad.mit.edu	37	20	17462284	17462284	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:17462284G>A	uc002wpm.2	+	12	1806	c.1486G>A	c.(1486-1488)GGG>AGG	p.G496R	PCSK2_uc002wpl.2_Missense_Mutation_p.G477R|PCSK2_uc010zrm.1_Missense_Mutation_p.G461R|PCSK2_uc002wpn.2_Missense_Mutation_p.G150R	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	496					enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CGCCTGTGAGGGGAAGGAAAA	0.522													24	86					0	0	1	0	0
PCSK2	5126	broad.mit.edu	37	20	17462538	17462538	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:17462538G>A	uc002wpm.2	+	12	2060	c.1740G>A	c.(1738-1740)CAG>CAA	p.Q580Q	PCSK2_uc002wpl.2_Silent_p.Q561Q|PCSK2_uc010zrm.1_Silent_p.Q545Q|PCSK2_uc002wpn.2_Silent_p.Q234Q	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	580					enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GCGCCCCGCAGAAGGGGGTGC	0.617													9	28					0	0	1	0	0
RRBP1	6238	broad.mit.edu	37	20	17614116	17614117	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:17614116_17614117GG>AA	uc010gcm.1	-	3	414_415	c.56_57CC>TT	c.(55-57)TCC>TTT	p.S19F	RRBP1_uc002wpu.2_Silent_p.207_208VL>VL|RRBP1_uc002wpv.1_Silent_p.433_434VL>VL|RRBP1_uc002wpw.1_Silent_p.433_434VL>VL|RRBP1_uc010gcl.1_Silent_p.207_208VL>VL			Q9P2E9	RRBP1_HUMAN	Homo sapiens mRNA for KIAA1398 protein, partial cds.	Error:Variant_position_missing_in_Q9P2E9_after_alignment					protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						TGCAGCTGCAGGACCTGCTTCT	0.639													8	70					0	0	1	0	0
BANF2	140836	broad.mit.edu	37	20	17705763	17705763	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:17705763C>T	uc002wpz.2	+	3	367	c.93C>T	c.(91-93)CTC>CTT	p.L31L	BANF2_uc010zrs.1_Silent_p.L38L|BANF2_uc002wqa.2_Silent_p.L31L	NM_178477	NP_848572	Q9H503	BAFL_HUMAN	barrier to autointegration factor 2 isoform 1	31						cytoplasm|nucleus	DNA binding			skin(1)	1						GCCATGAGCTCGCGATCAATT	0.493													19	88					0	0	1	0	0
SNX5	27131	broad.mit.edu	37	20	17934726	17934726	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:17934726A>G	uc002wqc.2	-	4	389	c.303T>C	c.(301-303)GGT>GGC	p.G101G	SNX5_uc002wqb.2_RNA|SNX5_uc002wqd.2_Silent_p.G101G|SNX5_uc002wqe.2_5'UTR|SNX5_uc010zrt.1_Silent_p.G101G	NM_014426	NP_055241	Q9Y5X3	SNX5_HUMAN	sorting nexin 5	101	Phosphatidylinositol bisphosphate binding (By similarity).|PX.				cell communication|pinocytosis|protein transport	cytoplasmic vesicle membrane|early endosome membrane|extrinsic to endosome membrane|extrinsic to internal side of plasma membrane|macropinocytic cup|phagocytic cup|ruffle	phosphatidylinositol binding			large_intestine(1)	1						TCTCTCGAGGACCATCAAAGT	0.493													62	174					0	0	1	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18123478	18123478	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:18123478C>T	uc002wqj.2	+	2	796	c.174C>T	c.(172-174)TCC>TCT	p.S58S	CSRP2BP_uc002wqk.2_5'Flank	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	58					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						GTGGGGATTCCCTCAACAGTG	0.527													24	65					0	0	1	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18165325	18165325	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:18165325C>T	uc002wqj.2	+	10	2686	c.2064C>T	c.(2062-2064)GGC>GGT	p.G688G	CSRP2BP_uc002wqk.2_Silent_p.G560G|CSRP2BP_uc010zru.1_Silent_p.G559G	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	688	N-acetyltransferase.				histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						TTGCCTTTGGCTTCATGGTTC	0.408													42	86					0	0	1	0	0
ZNF133	7692	broad.mit.edu	37	20	18295752	18295752	+	Missense_Mutation	SNP	C	T	T	rs140722849		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:18295752C>T	uc010gcq.2	+	5	562	c.257C>T	c.(256-258)CCT>CTT	p.P86L	ZNF133_uc010zrv.1_Missense_Mutation_p.P89L|ZNF133_uc010zrw.1_Missense_Mutation_p.P23L|ZNF133_uc010gcr.2_Missense_Mutation_p.P86L|ZNF133_uc010zrx.1_5'UTR|ZNF133_uc002wql.3_Missense_Mutation_p.P85L|ZNF133_uc010gcs.2_Missense_Mutation_p.P85L|ZNF133_uc010zry.1_5'UTR|ZNF133_uc002wqm.2_Missense_Mutation_p.P86L	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	86						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						CCTTTCTGCCCTCCGGGTTTC	0.527													28	115					0	0	1	0	0
SEC23B	10483	broad.mit.edu	37	20	18529400	18529400	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:18529400C>T	uc002wqz.1	+	16	2334	c.1891C>T	c.(1891-1893)CAT>TAT	p.H631Y	SEC23B_uc002wra.1_Missense_Mutation_p.H631Y|SEC23B_uc002wrb.1_Missense_Mutation_p.H631Y|SEC23B_uc010zsb.1_Missense_Mutation_p.H613Y|SEC23B_uc002wrc.1_Missense_Mutation_p.H631Y	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	631					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						TTACTCCTTTCATGGGCCACC	0.448													8	72					0	0	1	0	0
C20orf79	140856	broad.mit.edu	37	20	18794508	18794508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:18794508C>T	uc002wrk.2	+	1	139	c.49C>T	c.(49-51)CCT>TCT	p.P17S	uc002wrj.1_Intron	NM_178483	NP_848578	Q9UJQ7	CT079_HUMAN	hypothetical protein LOC140856	17							sterol binding			skin(3)	3						AGAGGATGGACCTCTGGTGGG	0.522													11	49					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19560691	19560691	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:19560691C>T	uc002wrl.2	+	4	593	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	132	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						ATGACTTCTTCGTCCCTTCCT	0.502													48	77					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19566125	19566125	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:19566125C>T	uc002wrl.2	+	6	746	c.549C>T	c.(547-549)ATC>ATT	p.I183I		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	183	Alpha-1.|Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						TTGGCACCATCGTGGGCTCAG	0.542													22	183					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19634720	19634720	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:19634720C>T	uc002wrl.2	+	7	824	c.627C>T	c.(625-627)TCC>TCT	p.S209S		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	209	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						TGGCTCTTTCCTCCTGGTGCC	0.507													11	78					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19654261	19654261	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:19654261C>T	uc002wrl.2	+	9	927	c.730C>T	c.(730-732)CTT>TTT	p.L244F		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	244	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						GTCTTTAGTCCTTGTGCTGAT	0.353													23	59					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665909	19665909	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:19665909G>A	uc002wrl.2	+	12	1425	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	410	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						GGCTGGCAACGAAACAgagaa	0.398													20	44					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665948	19665948	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:19665948G>A	uc002wrl.2	+	12	1464	c.1267G>A	c.(1267-1269)GAG>AAG	p.E423K		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	423	Cytoplasmic (Potential).|Poly-Glu.					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						gaatgatgaggaggaagagga	0.388													14	54					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665966	19665966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:19665966G>A	uc002wrl.2	+	12	1482	c.1285G>A	c.(1285-1287)GAT>AAT	p.D429N		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	429	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						ggaggacgaggatgatgatga	0.378													22	68					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665972	19665972	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:19665972G>A	uc002wrl.2	+	12	1488	c.1291G>A	c.(1291-1293)GAT>AAT	p.D431N		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	431	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						cgaggatgatgatgaagGACC	0.373													31	62					0	0	1	0	0
RIN2	54453	broad.mit.edu	37	20	19981479	19981479	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:19981479C>T	uc002wro.1	+	11	2623	c.2587C>T	c.(2587-2589)CGA>TGA	p.R863*	RIN2_uc010gcu.1_Nonsense_Mutation_p.R430*|RIN2_uc010gcv.1_Nonsense_Mutation_p.R657*	NM_018993	NP_061866	Q8WYP3	RIN2_HUMAN	Ras and Rab interactor 2	863	Ras-associating.				endocytosis|small GTPase mediated signal transduction	cytoplasm	GTPase activator activity|Rab guanyl-nucleotide exchange factor activity			lung(4)|ovary(1)	5						GCTGCACAGCCGACCACAGCC	0.522													13	64					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20054963	20054963	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20054963C>T	uc002wru.2	+	4	388	c.312C>T	c.(310-312)TTC>TTT	p.F104F	C20orf26_uc010gcw.1_Silent_p.F58F|C20orf26_uc010zse.1_Silent_p.F104F|C20orf26_uc010zsf.1_Silent_p.F104F	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	104										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		ATACGTTGTTCATGCACCTCT	0.507													40	109					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20071504	20071504	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20071504G>A	uc002wru.2	+	7	659	c.583G>A	c.(583-585)GAT>AAT	p.D195N	C20orf26_uc010gcw.1_Missense_Mutation_p.D149N|C20orf26_uc010zse.1_Missense_Mutation_p.D195N|C20orf26_uc010zsf.1_Missense_Mutation_p.D195N	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	195										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		AGACCATGACGATCTCATGCC	0.333													36	197					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20144725	20144725	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20144725G>A	uc002wru.2	+	11	1134	c.1058G>A	c.(1057-1059)GGA>GAA	p.G353E	C20orf26_uc010gcw.1_Missense_Mutation_p.G307E|C20orf26_uc010zse.1_Missense_Mutation_p.G353E|C20orf26_uc010zsf.1_Missense_Mutation_p.G353E	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	353										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		ATCTCCACTGGATATGCACAG	0.532													17	72					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20150048	20150048	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20150048C>T	uc002wru.2	+	13	1405	c.1329C>T	c.(1327-1329)TTC>TTT	p.F443F	C20orf26_uc010zse.1_Silent_p.F423F|C20orf26_uc010zsf.1_Silent_p.F443F	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	443										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		TGGTCCCTTTCAACACCTGCA	0.473													31	92					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20150060	20150060	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20150060C>T	uc002wru.2	+	13	1417	c.1341C>T	c.(1339-1341)ACC>ACT	p.T447T	C20orf26_uc010zse.1_Silent_p.T427T|C20orf26_uc010zsf.1_Silent_p.T447T	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	447										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		ACACCTGCACCCTCGAGCAGG	0.488													27	81					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20168604	20168604	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20168604G>A	uc002wru.2	+	14	1492	c.1416G>A	c.(1414-1416)TTG>TTA	p.L472L	C20orf26_uc010zse.1_Silent_p.L452L	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	472										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CCACTCTCTTGGATACTCCTG	0.393													17	91					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20258009	20258009	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20258009G>A	uc002wru.2	+	22	2779	c.2703G>A	c.(2701-2703)GCG>GCA	p.A901A	C20orf26_uc010zse.1_Silent_p.A881A|C20orf26_uc002wrw.2_RNA	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	901										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		ACCGGGATGCGATCCTGGCCC	0.632													35	106					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20269523	20269523	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20269523G>A	uc002wru.2	+	23	3143	c.3067G>A	c.(3067-3069)GAG>AAG	p.E1023K	C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	1023										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		GCCTGTGACCGAGCCACCAGC	0.483													15	44					0	0	1	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20582410	20582410	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20582410C>T	uc002wrz.2	-	16	2262	c.2119G>A	c.(2119-2121)GAA>AAA	p.E707K	RALGAPA2_uc010gcx.2_Missense_Mutation_p.E411K|RALGAPA2_uc010zsg.1_Missense_Mutation_p.E108K	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	707					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						CGCATCGGTTCGGTCACATCT	0.478													17	47					0	0	1	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20585969	20585969	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:20585969G>A	uc002wrz.2	-	15	2031	c.1888C>T	c.(1888-1890)CTC>TTC	p.L630F	RALGAPA2_uc010gcx.2_Missense_Mutation_p.L334F|RALGAPA2_uc010zsg.1_Missense_Mutation_p.L31F	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	630					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						CATTCCGTGAGGGAGGACAGC	0.483													12	42					0	0	1	0	0
PLK1S1	55857	broad.mit.edu	37	20	21143493	21143493	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:21143493C>T	uc002wsb.2	+	6	1178	c.1045C>T	c.(1045-1047)CAT>TAT	p.H349Y	PLK1S1_uc010zsh.1_Missense_Mutation_p.H246Y|PLK1S1_uc010zsi.1_Missense_Mutation_p.H216Y|PLK1S1_uc010zsj.1_RNA|uc002wsc.2_RNA|PLK1S1_uc002wsd.2_RNA	NM_018474	NP_060944	Q2M2Z5	KIZ_HUMAN	polo-like kinase 1 substrate 1 isoform 1	349					spindle organization	centrosome	protein kinase binding				0						ACTTGCAGATCATCTTGCTCA	0.443													10	24					0	0	1	0	0
XRN2	22803	broad.mit.edu	37	20	21314251	21314251	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:21314251C>T	uc002wsf.1	+	10	1023	c.928C>T	c.(928-930)CGT>TGT	p.R310C	XRN2_uc002wsg.1_Missense_Mutation_p.R234C|XRN2_uc010zsk.1_Missense_Mutation_p.R256C	NM_012255	NP_036387	Q9H0D6	XRN2_HUMAN	5'-3' exoribonuclease 2	310					cell growth|DNA catabolic process, exonucleolytic|mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|spermatogenesis|transcription termination, DNA-dependent	nucleolus	5'-3' exoribonuclease activity|nucleic acid binding|protein binding|zinc ion binding			skin(1)	1						TAATGTTCTTCGTGAGGTATG	0.403													66	165					0	0	1	0	0
NKX2-2	4821	broad.mit.edu	37	20	21492823	21492823	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:21492823C>T	uc002wsi.2	-	2	917	c.560G>A	c.(559-561)CGG>CAG	p.R187Q		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	187	Homeobox.				brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						TTTCTCGGCCCGGGCGCGCTT	0.677													15	38					0	0	1	0	0
NKX2-2	4821	broad.mit.edu	37	20	21492959	21492959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:21492959C>T	uc002wsi.2	-	2	781	c.424G>A	c.(424-426)GAG>AAG	p.E142K		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	142	Homeobox.				brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						CGCTCCAGCTCGTAGGTCTGC	0.677													8	22					0	0	1	0	0
PAX1	5075	broad.mit.edu	37	20	21687424	21687424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:21687424C>T	uc002wsj.2	+	2	689	c.635C>T	c.(634-636)CCT>CTT	p.P212L	PAX1_uc010zsl.1_Missense_Mutation_p.P212L|PAX1_uc010zsm.1_Missense_Mutation_p.P188L	NM_006192	NP_006183	P15863	PAX1_HUMAN	paired box 1	212	Paired.				regulation of transcription, DNA-dependent|skeletal system development|transcription from RNA polymerase II promoter	nucleus	DNA binding			upper_aerodigestive_tract(1)|kidney(1)	2						TACAATGTGCCTTCGGTGAGC	0.632													45	72					0	0	1	0	0
PAX1	5075	broad.mit.edu	37	20	21689975	21689975	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:21689975C>T	uc002wsj.2	+	4	1229	c.1175C>T	c.(1174-1176)CCG>CTG	p.P392L	PAX1_uc010zsl.1_Missense_Mutation_p.P392L|PAX1_uc010zsm.1_Missense_Mutation_p.P368L	NM_006192	NP_006183	P15863	PAX1_HUMAN	paired box 1	392					regulation of transcription, DNA-dependent|skeletal system development|transcription from RNA polymerase II promoter	nucleus	DNA binding			upper_aerodigestive_tract(1)|kidney(1)	2						CCGGGCCCGCCGTGGCCGCCT	0.746													31	10					0	0	1	0	0
THBD	7056	broad.mit.edu	37	20	23029230	23029230	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23029230G>A	uc002wss.2	-	1	1072	c.912C>T	c.(910-912)GGC>GGT	p.G304G	THBD_uc002wst.1_5'Flank|THBD_uc002wsu.1_Silent_p.G245G	NM_000361	NP_000352	P07204	TRBM_HUMAN	thrombomodulin precursor	304	EGF-like 2.|Extracellular (Potential).				blood coagulation|leukocyte migration|negative regulation of fibrinolysis|negative regulation of platelet activation	cell surface|integral to plasma membrane	calcium ion binding|protein binding|transmembrane receptor activity				0	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)				Drotrecogin alfa(DB00055)	ACGAGTAGGAGCCCGGCTGGT	0.687													8	15					0	0	1	0	0
CD93	22918	broad.mit.edu	37	20	23065152	23065152	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23065152C>T	uc002wsv.2	-	1	1826	c.1678G>A	c.(1678-1680)GAG>AAG	p.E560K		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	560	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CCTGCAGGCTCCTGGGGGCCA	0.617													34	69					0	0	1	0	0
CD93	22918	broad.mit.edu	37	20	23065576	23065577	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23065576_23065577GG>AA	uc002wsv.2	-	1	1401_1402	c.1253_1254CC>TT	c.(1252-1254)GCC>GTT	p.A418V		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	418	Extracellular (Potential).|EGF-like 4; calcium-binding (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CGTCCTCCCCGGCCAGGACGTA	0.634													35	64					0	0	1	0	0
CD93	22918	broad.mit.edu	37	20	23066017	23066017	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23066017G>T	uc002wsv.2	-	1	961	c.813C>A	c.(811-813)TGC>TGA	p.C271*		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	271	EGF-like 1.|Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					AGTCCTGGTGGCAGCCCCCAT	0.627													39	114					5.43694e-19	5.46548e-19	1	1	0
CD93	22918	broad.mit.edu	37	20	23066116	23066116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23066116G>A	uc002wsv.2	-	1	862	c.714C>T	c.(712-714)TTC>TTT	p.F238F		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	238	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CCTTGCACAGGAAATAATGAC	0.592													41	131					0	0	1	0	0
CD93	22918	broad.mit.edu	37	20	23066136	23066136	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23066136C>T	uc002wsv.2	-	1	842	c.694G>A	c.(694-696)GAG>AAG	p.E232K		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	232	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CTCTGAGTCTCGTCCTTGTCA	0.597													47	129					0	0	1	0	0
NXT1	29107	broad.mit.edu	37	20	23334836	23334836	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23334836C>T	uc002wsx.1	+	2	545	c.158C>T	c.(157-159)TCA>TTA	p.S53L		NM_013248	NP_037380	Q9UKK6	NXT1_HUMAN	NTF2-like export factor 1	53	NTF2.					cytoplasm|nuclear pore				ovary(1)	1	Lung NSC(19;0.0605)|Colorectal(13;0.0993)|all_lung(19;0.135)					AATGCTGTTTCAGGACAAGAA	0.507													29	55					0	0	1	0	0
CST8	10047	broad.mit.edu	37	20	23476501	23476501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23476501C>T	uc002wth.1	+	4	736	c.379C>T	c.(379-381)CCC>TCC	p.P127S		NM_005492	NP_005483	O60676	CST8_HUMAN	cystatin 8 precursor	127						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					AGGAGCACTTCCCTGGAATGG	0.348													14	150					0	0	1	0	0
CST9	128822	broad.mit.edu	37	20	23584308	23584308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23584308C>T	uc002wtl.2	-	2	428	c.319G>A	c.(319-321)GAA>AAA	p.E107K		NM_001008693	NP_001008693	Q5W186	CST9_HUMAN	cystatin 9 precursor	107						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Colorectal(13;0.0993)					ATGTCATCTTCAAATTTCCTA	0.473													15	221					0	0	1	0	0
CST4	1472	broad.mit.edu	37	20	23667824	23667824	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23667824C>T	uc002wto.1	-	2	299	c.243G>A	c.(241-243)GTG>GTA	p.V81V		NM_001899	NP_001890	P01036	CYTS_HUMAN	cystatin S precursor	81						extracellular region	cysteine-type endopeptidase inhibitor activity			breast(1)	1	Lung NSC(19;0.0789)|Colorectal(13;0.0993)|all_lung(19;0.169)					AGAAGTAATTCACCCCCCCAA	0.557													49	184					0	0	1	0	0
CST4	1472	broad.mit.edu	37	20	23667831	23667831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23667831C>T	uc002wto.1	-	2	292	c.236G>A	c.(235-237)GGG>GAG	p.G79E		NM_001899	NP_001890	P01036	CYTS_HUMAN	cystatin S precursor	79	Secondary area of contact.					extracellular region	cysteine-type endopeptidase inhibitor activity			breast(1)	1	Lung NSC(19;0.0789)|Colorectal(13;0.0993)|all_lung(19;0.169)					ATTCACCCCCCCAAAGGTCTG	0.552													45	186					0	0	1	0	0
CST1	1469	broad.mit.edu	37	20	23728509	23728509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23728509C>T	uc002wtp.2	-	3	441	c.370G>A	c.(370-372)GAA>AAA	p.E124K		NM_001898	NP_001889	P01037	CYTN_HUMAN	cystatin SN precursor	124						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Lung NSC(19;0.0676)|all_lung(19;0.148)					CAGGGAACTTCGTAGATCTCG	0.527													31	34					0	0	1	0	0
CST1	1469	broad.mit.edu	37	20	23729755	23729755	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23729755C>T	uc002wtp.2	-	2	311	c.240G>A	c.(238-240)GGG>GGA	p.G80G		NM_001898	NP_001889	P01037	CYTN_HUMAN	cystatin SN precursor	80	Secondary area of contact.					extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Lung NSC(19;0.0676)|all_lung(19;0.148)					AGTAATTCACCCCCCCAACGG	0.557													34	185					0	0	1	0	0
CST1	1469	broad.mit.edu	37	20	23731354	23731354	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23731354G>A	uc002wtp.2	-	1	221	c.150C>T	c.(148-150)TTC>TTT	p.F50F		NM_001898	NP_001889	P01037	CYTN_HUMAN	cystatin SN precursor	50						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Lung NSC(19;0.0676)|all_lung(19;0.148)					CGCTGATGGCGAAGTGAAGGG	0.572													11	76					0	0	1	0	0
CST1	1469	broad.mit.edu	37	20	23731413	23731413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23731413G>A	uc002wtp.2	-	1	162	c.91C>T	c.(91-93)CCG>TCG	p.P31S		NM_001898	NP_001889	P01037	CYTN_HUMAN	cystatin SN precursor	31						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Lung NSC(19;0.0676)|all_lung(19;0.148)					ATGCCACCCGGGATTATCCTA	0.562													5	51					0	0	1	0	0
CST5	1473	broad.mit.edu	37	20	23860381	23860381	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23860381G>A	uc002wtr.1	-	1	1	c.-66_splice	c.e1-1			NM_001900	NP_001891	P28325	CYTD_HUMAN	cystatin D precursor							extracellular region	cysteine-type endopeptidase inhibitor activity|protein binding				0						GCTGAGGCAGGAAGCCCAGGC	0.498													4	15					0	0	1	0	0
GGTLC1	92086	broad.mit.edu	37	20	23965900	23965900	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23965900C>T	uc002wts.2	-	6	764	c.631G>A	c.(631-633)GCA>ACA	p.A211T	GGTLC1_uc002wtu.2_Missense_Mutation_p.A211T	NM_178312	NP_842564	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	211							gamma-glutamyltransferase activity			ovary(1)	1						GAGGCAGCTGCCCAGCCACCA	0.592													27	76					0	0	1	0	0
GGTLC1	92086	broad.mit.edu	37	20	23966723	23966723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:23966723G>A	uc002wts.2	-	3	427	c.294C>T	c.(292-294)TTC>TTT	p.F98F	GGTLC1_uc002wtu.2_Silent_p.F98F	NM_178312	NP_842564	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	98							gamma-glutamyltransferase activity			ovary(1)	1						CTGGCTGGATGAAATTGGCAG	0.612													32	116					0	0	1	0	0
TMEM90B	79953	broad.mit.edu	37	20	24523781	24523781	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:24523781C>T	uc002wtw.1	+	2	681	c.48C>T	c.(46-48)ATC>ATT	p.I16I		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	16	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						ACAGTAAAATCAGTGATGCTG	0.517													31	66					0	0	1	0	0
TMEM90B	79953	broad.mit.edu	37	20	24523833	24523833	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:24523833G>A	uc002wtw.1	+	2	733	c.100G>A	c.(100-102)GAG>AAG	p.E34K		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	34	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CTTGATGGCCGAGAGCAGAGA	0.552													28	88					0	0	1	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524132	24524132	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:24524132C>T	uc002wtw.1	+	2	1032	c.399C>T	c.(397-399)TTC>TTT	p.F133F		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	133	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						ATGGGAAGTTCATTGACCTCT	0.587													51	117					0	0	1	0	0
C20orf3	57136	broad.mit.edu	37	20	24959427	24959427	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:24959427G>A	uc002wty.2	-	3	405	c.304C>T	c.(304-306)CCG>TCG	p.P102S	C20orf3_uc002wtz.2_Missense_Mutation_p.P102S|C20orf3_uc010zsw.1_Missense_Mutation_p.P102S	NM_020531	NP_065392	Q9HDC9	APMAP_HUMAN	chromosome 20 open reading frame 3	102	Extracellular (Potential).				biosynthetic process	cell surface|integral to membrane	arylesterase activity|strictosidine synthase activity			ovary(1)	1						ATGGACTCCGGTCCAACAAGT	0.537													25	59					0	0	1	0	0
ACSS1	84532	broad.mit.edu	37	20	25003624	25003624	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:25003624G>A	uc002wub.2	-	5	1790	c.912C>T	c.(910-912)ATC>ATT	p.I304I	ACSS1_uc002wuc.2_Silent_p.I304I|ACSS1_uc010gdc.2_Intron|ACSS1_uc002wud.1_RNA|ACSS1_uc002wua.2_Silent_p.I221I	NM_032501	NP_115890	Q9NUB1	ACS2L_HUMAN	acyl-CoA synthetase short-chain family member 1	304					acetyl-CoA biosynthetic process|ethanol oxidation|xenobiotic metabolic process	mitochondrial matrix	acetate-CoA ligase activity|AMP binding|ATP binding|protein binding			ovary(1)|skin(1)	2					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GGGTATGGACGATGCCCTTGG	0.637													9	26					0	0	1	0	0
ENTPD6	955	broad.mit.edu	37	20	25201908	25201908	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:25201908C>T	uc002wuj.2	+	11	1164	c.984C>T	c.(982-984)CCC>CCT	p.P328P	ENTPD6_uc010zsy.1_Silent_p.P328P|ENTPD6_uc010gdj.1_Silent_p.P300P|ENTPD6_uc010zsz.1_Silent_p.P110P|ENTPD6_uc002wum.2_Silent_p.P311P|ENTPD6_uc010zta.1_Silent_p.P328P|ENTPD6_uc002wun.2_Intron|ENTPD6_uc002wuk.2_Silent_p.P327P|ENTPD6_uc002wul.2_Silent_p.P327P|ENTPD6_uc010ztb.1_Silent_p.P300P|ENTPD6_uc010ztc.1_Silent_p.P300P|ENTPD6_uc002wuo.2_Silent_p.P80P|ENTPD6_uc010ztd.1_Intron|ENTPD6_uc010gdk.1_5'Flank|ENTPD6_uc010gdl.1_5'Flank	NM_001247	NP_001238	O75354	ENTP6_HUMAN	ectonucleoside triphosphate diphosphohydrolase 6	328	Lumenal (Potential).					Golgi membrane|integral to membrane	nucleoside-diphosphatase activity				0						GCTTGTCTCCCAGTTTCAAAG	0.512													11	60					0	0	1	0	0
PYGB	5834	broad.mit.edu	37	20	25264767	25264767	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:25264767C>T	uc002wup.2	+	14	1757	c.1648C>T	c.(1648-1650)CTG>TTG	p.L550L		NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	550					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	CTCGGCCTTCCTGGAGAAGGA	0.552													36	78					0	0	1	0	0
ABHD12	26090	broad.mit.edu	37	20	25287509	25287509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:25287509G>A	uc002wus.1	-	10	1048	c.910C>T	c.(910-912)CCT>TCT	p.P304S	ABHD12_uc002wuq.2_Missense_Mutation_p.P304S|ABHD12_uc002wur.2_Missense_Mutation_p.P303S|ABHD12_uc002wut.1_Missense_Mutation_p.P303S|ABHD12_uc002wuu.1_Missense_Mutation_p.P84S	NM_001042472	NP_001035937	Q8N2K0	ABD12_HUMAN	abhydrolase domain containing 12 isoform a	304	Extracellular (Potential).					integral to membrane	acylglycerol lipase activity			skin(1)	1						CTTGTAATAGGATCAAGGAAG	0.378													8	52					0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25439060	25439060	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:25439060G>A	uc002wux.1	-	22	3876	c.3802C>T	c.(3802-3804)CTT>TTT	p.L1268F	NINL_uc010gdn.1_Missense_Mutation_p.L919F|NINL_uc002wuw.1_Missense_Mutation_p.L59F	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	1268	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TCTCCCTGAAGGCTGAGCAGG	0.687													11	58					0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25457027	25457027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:25457027G>A	uc002wux.1	-	17	2974	c.2900C>T	c.(2899-2901)TCG>TTG	p.S967L	NINL_uc010gdn.1_Intron	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	967					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TCCCCTGCACGAAGCGGCCGG	0.687													10	56					0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25470566	25470566	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:25470566G>A	uc002wux.1	-	12	1615	c.1541C>T	c.(1540-1542)TCG>TTG	p.S514L	NINL_uc010gdn.1_Missense_Mutation_p.S514L|NINL_uc010gdo.1_Missense_Mutation_p.S297L	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	514	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						CAGCCTCTCCGAATCCGAAAG	0.577													53	114					0	0	1	0	0
C20orf191	149934	broad.mit.edu	37	20	26084111	26084111	+	Missense_Mutation	SNP	A	G	G	rs75722320	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:26084111A>G	uc002wvj.3	-	2	360	c.305T>C	c.(304-306)GTC>GCC	p.V102A		NR_003678				SubName: Full=Putative uncharacterized protein ENSP00000323172;												0						AATATATTAGACGAAGACTTT	0.194													3	26					0	0	1	0	0
C20orf191	149934	broad.mit.edu	37	20	26084113	26084113	+	Silent	SNP	G	A	A	rs79634027		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:26084113G>A	uc002wvj.3	-	2	358	c.303C>T	c.(301-303)TTC>TTT	p.F101F		NR_003678				SubName: Full=Putative uncharacterized protein ENSP00000323172;												0						TATATTAGACGAAGACTTTTA	0.199													9	20					0	0	1	0	0
DEFB115	245929	broad.mit.edu	37	20	29847325	29847325	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:29847325G>A	uc002wvp.1	+	2	157	c.157G>A	c.(157-159)GAG>AAG	p.E53K		NM_001037730	NP_001032819	Q30KQ5	DB115_HUMAN	beta-defensin 115 precursor	53					defense response to bacterium	extracellular region				ovary(1)	1			Colorectal(19;0.00445)|COAD - Colon adenocarcinoma(19;0.0347)			CAAAGAAATTGAGAGGAAGAA	0.353													17	39					0	0	1	0	0
DEFB118	117285	broad.mit.edu	37	20	29960755	29960755	+	Nonsense_Mutation	SNP	C	T	T	rs34328728		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:29960755C>T	uc002wvr.2	+	2	180	c.154C>T	c.(154-156)CGA>TGA	p.R52*		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	52					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			CAAAAATCTTCGAGCTTGCTG	0.438													40	80					0	0	1	0	0
REM1	28954	broad.mit.edu	37	20	30072045	30072045	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30072045G>A	uc002wwa.2	+	5	993	c.709G>A	c.(709-711)GAG>AAG	p.E237K	NCRNA00028_uc010ztn.1_5'Flank	NM_014012	NP_054731	O75628	REM1_HUMAN	RAS-like GTP-binding protein REM	237					small GTPase mediated signal transduction	membrane	calmodulin binding|GTP binding|GTPase activity			lung(2)|pancreas(2)	4	all_cancers(5;0.000119)|Lung NSC(7;1.32e-05)|all_lung(7;2.14e-05)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			CGAGCTCTTCGAGGGCGTGGT	0.701													6	13					0	0	1	0	0
TPX2	22974	broad.mit.edu	37	20	30365431	30365431	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30365431C>T	uc002wwp.1	+	9	1570	c.872C>T	c.(871-873)CCT>CTT	p.P291L	TPX2_uc010gdv.1_Missense_Mutation_p.P291L	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	291					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			CGAAAGCATCCTTCATCTCCT	0.363													36	67					0	0	1	0	0
TPX2	22974	broad.mit.edu	37	20	30366743	30366743	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30366743G>A	uc002wwp.1	+	10	1708	c.1010G>A	c.(1009-1011)CGA>CAA	p.R337Q	TPX2_uc010gdv.1_Missense_Mutation_p.R337Q	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	337					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			TTCCATAAACGAACCCCTAAC	0.413													44	94					0	0	1	0	0
TPX2	22974	broad.mit.edu	37	20	30371579	30371579	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30371579C>A	uc002wwp.1	+	12	1966	c.1268C>A	c.(1267-1269)CCT>CAT	p.P423H	TPX2_uc010gdv.1_Missense_Mutation_p.P459H	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	423					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			AAGAAACCACCTGTGAAACCA	0.408													41	106					7.63091e-17	7.66815e-17	1	1	0
TPX2	22974	broad.mit.edu	37	20	30381660	30381660	+	Missense_Mutation	SNP	G	A	A	rs61754553	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30381660G>A	uc002wwp.1	+	14	2217	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	TPX2_uc010gdv.1_Missense_Mutation_p.E543K	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	507					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			GGAAGAGGACGAACCGGTAGT	0.433													87	214					0	0	1	0	0
MYLK2	85366	broad.mit.edu	37	20	30418653	30418653	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30418653G>A	uc002wwq.2	+	9	1358	c.1256G>A	c.(1255-1257)GGG>GAG	p.G419E	MYLK2_uc002wws.2_Missense_Mutation_p.G36E|MYLK2_uc010gdw.1_5'Flank	NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	419	Protein kinase.				cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			AACACCACCGGGCATTTGGTG	0.627													83	215					0	0	1	0	0
FOXS1	2307	broad.mit.edu	37	20	30432372	30432372	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30432372C>T	uc002wwt.1	-	1	1049	c.974G>A	c.(973-975)GGA>GAA	p.G325E		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	325					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						GAAGAACATTCCTGGCGTCCG	0.617													28	79					0	0	1	0	0
FOXS1	2307	broad.mit.edu	37	20	30432457	30432457	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30432457C>T	uc002wwt.1	-	1	964	c.889G>A	c.(889-891)GAA>AAA	p.E297K		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	297					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						ACCCAGGGTTCCTTGTGGTCA	0.652													13	31					0	0	1	0	0
FOXS1	2307	broad.mit.edu	37	20	30432527	30432527	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30432527G>A	uc002wwt.1	-	1	894	c.819C>T	c.(817-819)GCC>GCT	p.A273A		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	273					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						CAGGGGAGGGGGCTGCTGAGG	0.652													9	16					0	0	1	0	0
FOXS1	2307	broad.mit.edu	37	20	30433000	30433001	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30433000_30433001GG>AA	uc002wwt.1	-	1	420_421	c.345_346CC>TT	c.(343-348)ACCCGG>ACTTGG	p.R116W		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	116					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						CCTGTCTGCCGGGTGAAGCGGC	0.703													10	32					0	0	1	0	0
FOXS1	2307	broad.mit.edu	37	20	30433256	30433256	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30433256G>A	uc002wwt.1	-	1	165	c.90C>T	c.(88-90)GCC>GCT	p.A30A		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	30	Fork-head.				anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						AGCTCTGGATGGCCATAGCAA	0.662													24	91					0	0	1	0	0
TTLL9	164395	broad.mit.edu	37	20	30507699	30507699	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30507699C>T	uc010gdx.1	+	7	790	c.537C>T	c.(535-537)CTC>CTT	p.L179L	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_Intron|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Intron|TTLL9_uc010ztp.1_Intron|TTLL9_uc010ztq.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	179	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GCATCTTCCTCTTCCGTAGGC	0.622													35	62					0	0	1	0	0
TTLL9	164395	broad.mit.edu	37	20	30510853	30510853	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30510853G>A	uc010gdx.1	+	8	914	c.661G>A	c.(661-663)GGA>AGA	p.G221R	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_RNA|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Missense_Mutation_p.G108R|TTLL9_uc010ztp.1_RNA|TTLL9_uc010ztq.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	221	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			TTACCTGATAGGAGGTGAGAT	0.483													27	73					0	0	1	0	0
XKR7	343702	broad.mit.edu	37	20	30584330	30584330	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30584330C>T	uc002wxe.2	+	3	984	c.810C>T	c.(808-810)CTC>CTT	p.L270L		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	270	Helical; (Potential).					integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CCGCCTCCCTCGTGTCTCTGG	0.711													7	16					0	0	1	0	0
XKR7	343702	broad.mit.edu	37	20	30584886	30584886	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30584886C>T	uc002wxe.2	+	3	1540	c.1366C>T	c.(1366-1368)CGT>TGT	p.R456C		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	456						integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			TTGCATCTTCCGTAAGGCCTC	0.632													42	84					0	0	1	0	0
XKR7	343702	broad.mit.edu	37	20	30585176	30585176	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30585176G>A	uc002wxe.2	+	3	1830	c.1656G>A	c.(1654-1656)GAG>GAA	p.E552E		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	552						integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			TGGCACTGGAGTACTCCTCAC	0.602													22	98					0	0	1	0	0
HCK	3055	broad.mit.edu	37	20	30674574	30674574	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30674574G>A	uc002wxh.2	+	9	1150	c.979G>A	c.(979-981)GAG>AAG	p.E327K	HCK_uc010gdy.2_Missense_Mutation_p.E306K|HCK_uc002wxi.2_Missense_Mutation_p.E305K	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	327	Protein kinase.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGTCACCAAGGAGCCCATCTA	0.592													20	54					0	0	1	0	0
HCK	3055	broad.mit.edu	37	20	30686936	30686936	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30686936C>T	uc002wxh.2	+	12	1547	c.1376C>T	c.(1375-1377)CCA>CTA	p.P459L	HCK_uc010gdy.2_Missense_Mutation_p.P438L|HCK_uc002wxi.2_Missense_Mutation_p.P437L	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	459	Protein kinase.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			ATCCCTTACCCAGGTAGGGAA	0.438													37	112					0	0	1	0	0
TM9SF4	9777	broad.mit.edu	37	20	30732918	30732918	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30732918C>T	uc002wxj.2	+	7	912	c.677C>T	c.(676-678)TCG>TTG	p.S226L	TM9SF4_uc010ztr.1_Missense_Mutation_p.S152L|TM9SF4_uc010zts.1_Missense_Mutation_p.S133L|TM9SF4_uc002wxk.2_Missense_Mutation_p.S209L|TM9SF4_uc010gdz.2_Missense_Mutation_p.S133L	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	226						integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GAGAAGAGTTCGTGCACTCTG	0.562													23	52					0	0	1	0	0
PLAGL2	5326	broad.mit.edu	37	20	30784745	30784745	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30784745G>A	uc002wxn.2	-	3	1218	c.1001C>T	c.(1000-1002)TCC>TTC	p.S334F		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	pleiomorphic adenoma gene-like 2	334						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CTGAGCTGGGGAAGAGATAGG	0.557													14	143					0	0	1	0	0
PLAGL2	5326	broad.mit.edu	37	20	30784909	30784909	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30784909G>A	uc002wxn.2	-	3	1054	c.837C>T	c.(835-837)GCC>GCT	p.A279A		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	pleiomorphic adenoma gene-like 2	279						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CGTCCCGAGAGGCCATGCACA	0.592													19	51					0	0	1	0	0
POFUT1	23509	broad.mit.edu	37	20	30797941	30797941	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30797941C>T	uc002wxp.2	+	2	241	c.192C>T	c.(190-192)ACC>ACT	p.T64T	POFUT1_uc002wxo.2_Silent_p.T64T|POFUT1_uc010ztt.1_Intron|POFUT1_uc010ztu.1_Intron|PLAGL2_uc002wxn.2_5'Flank	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	64					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TAAACCGTACCTTGGCTGTCC	0.547													27	195					0	0	1	0	0
KIF3B	9371	broad.mit.edu	37	20	30898307	30898307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30898307C>T	uc002wxq.2	+	2	894	c.727C>T	c.(727-729)CTT>TTT	p.L243F	KIF3B_uc010ztv.1_Missense_Mutation_p.L243F|KIF3B_uc010ztw.1_Missense_Mutation_p.L243F	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	243	Kinesin-motor.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			AAAATTGAACCTTGTAGATCT	0.512													23	42					0	0	1	0	0
KIF3B	9371	broad.mit.edu	37	20	30898673	30898673	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:30898673C>T	uc002wxq.2	+	2	1260	c.1093C>T	c.(1093-1095)CTC>TTC	p.L365F	KIF3B_uc010ztv.1_Missense_Mutation_p.L365F|KIF3B_uc010ztw.1_Missense_Mutation_p.L365F	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	365	Potential.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GATTGCTCGGCTCAAGGCCCA	0.512													9	76					0	0	1	0	0
DNMT3B	1789	broad.mit.edu	37	20	31374318	31374319	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31374318_31374319GA>TT	uc002wyc.2	+	5	638_639	c.317_318GA>TT	c.(316-318)CGA>CTT	p.R106L	DNMT3B_uc010ztx.1_Intron|DNMT3B_uc010zty.1_Intron|DNMT3B_uc002wyd.2_Missense_Mutation_p.R106L|DNMT3B_uc002wye.2_Missense_Mutation_p.R106L|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Intron|DNMT3B_uc010zua.1_Intron|DNMT3B_uc002wyf.2_Missense_Mutation_p.R118L	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	106	Interaction with DNMT1 and DNMT3A.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						GTCCGAACTCGAAATAACAACA	0.629													18	54					0	0	1	0	0
DNMT3B	1789	broad.mit.edu	37	20	31386389	31386389	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31386389C>T	uc002wyc.2	+	15	1935	c.1614C>T	c.(1612-1614)CGC>CGT	p.R538R	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Silent_p.R518R|DNMT3B_uc002wye.2_Silent_p.R518R|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Silent_p.R476R|DNMT3B_uc010zua.1_Silent_p.R442R|DNMT3B_uc002wyf.2_Silent_p.R530R|DNMT3B_uc002wyg.2_Silent_p.R237R|DNMT3B_uc010geg.2_5'Flank|DNMT3B_uc010geh.2_5'Flank	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	538	ADD.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						TCCTGCGGCGCCGGAAGGACT	0.637													26	43					0	0	1	0	0
SUN5	140732	broad.mit.edu	37	20	31577457	31577457	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31577457G>A	uc002wyi.2	-	9	675	c.582C>T	c.(580-582)ATC>ATT	p.I194I		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	194					spermatogenesis					skin(1)	1						CTGGCTTTTCGATGTAATCTC	0.483													15	55					0	0	1	0	0
SUN5	140732	broad.mit.edu	37	20	31577468	31577468	+	Missense_Mutation	SNP	C	T	T	rs142997193		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31577468C>T	uc002wyi.2	-	9	664	c.571G>A	c.(571-573)GGA>AGA	p.G191R		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	191					spermatogenesis					skin(1)	1						ATGTAATCTCCGTGTATCATC	0.488													13	57					0	0	1	0	0
SUN5	140732	broad.mit.edu	37	20	31585462	31585462	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31585462C>T	uc002wyi.2	-	6	465	c.372G>A	c.(370-372)TCG>TCA	p.S124S		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	124					spermatogenesis					skin(1)	1						CTTTCATTTTCGATGGTAAGT	0.403													22	39					0	0	1	0	0
BPIL1	80341	broad.mit.edu	37	20	31606074	31606075	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31606074_31606075CC>TT	uc002wyj.2	+	8	781_782	c.587_588CC>TT	c.(586-588)CCC>CTT	p.P196L		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	196						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						GGCCTCAACCCCGTGGGTCCTG	0.48													18	73					0	0	1	0	0
BPIL1	80341	broad.mit.edu	37	20	31606601	31606601	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31606601C>T	uc002wyj.2	+	9	1022	c.828C>T	c.(826-828)GCC>GCT	p.A276A		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	276						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						AGGCCGGTGCCCTCAACCTGG	0.667													16	61					0	0	1	0	0
BPIL1	80341	broad.mit.edu	37	20	31608171	31608171	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31608171T>G	uc002wyj.2	+	12	1312	c.1118T>G	c.(1117-1119)GTG>GGG	p.V373G		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	373						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						GTGTCCAAGGTGAAGCTTCAG	0.612													17	61					0	0	1	0	0
BPIL1	80341	broad.mit.edu	37	20	31611188	31611188	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31611188G>A	uc002wyj.2	+	16	1570	c.1376G>A	c.(1375-1377)TGA>TAA	p.*459*		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	459						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						TACCAGAGCTGAGGCAAGACC	0.567													9	58					0	0	1	0	0
C20orf185	359710	broad.mit.edu	37	20	31652321	31652321	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31652321C>T	uc002wym.1	+	7	711	c.711C>T	c.(709-711)CTC>CTT	p.L237L		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	237	Leu-rich.				innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						CATTGCCTCTCATCTCCAACC	0.587													11	44					0	0	1	0	0
C20orf185	359710	broad.mit.edu	37	20	31656616	31656616	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31656616G>A	uc002wym.1	+	10	986	c.986G>A	c.(985-987)GGG>GAG	p.G329E		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	329					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						CAGGCCCTGGGGAAGCTGCCC	0.463													15	47					0	0	1	0	0
C20orf186	149954	broad.mit.edu	37	20	31671187	31671187	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31671187C>T	uc010zue.1	+	3	199	c.184C>T	c.(184-186)CCC>TCC	p.P62S		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	62						cytoplasm|extracellular region	lipid binding				0						TGGTGATATTCCCTACAATGA	0.408													39	122					0	0	1	0	0
C20orf186	149954	broad.mit.edu	37	20	31671680	31671680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31671680G>A	uc010zue.1	+	3	692	c.677G>A	c.(676-678)GGG>GAG	p.G226E		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	226	Gly-rich.					cytoplasm|extracellular region	lipid binding				0						GGCATCACGGGGTAAGGAGGG	0.622													5	33					0	0	1	0	0
C20orf186	149954	broad.mit.edu	37	20	31672723	31672723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31672723C>T	uc010zue.1	+	4	718	c.703C>T	c.(703-705)CCT>TCT	p.P235S		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	235						cytoplasm|extracellular region	lipid binding				0						GCTGACCCTCCCTCGGGTGTC	0.667													15	16					0	0	1	0	0
C20orf186	149954	broad.mit.edu	37	20	31682918	31682918	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31682918C>T	uc010zue.1	+	10	1372	c.1357C>T	c.(1357-1359)CCT>TCT	p.P453S		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	453						cytoplasm|extracellular region	lipid binding				0						TGAAGAGCTTCCTCCACTTAC	0.488													60	143					0	0	1	0	0
C20orf70	140683	broad.mit.edu	37	20	31761975	31761975	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31761975G>A	uc002wyo.1	+	4	464	c.393G>A	c.(391-393)GCG>GCA	p.A131A		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	131						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						CTGTCACCGCGAATGTCACTG	0.532													28	81					0	0	1	0	0
C20orf70	140683	broad.mit.edu	37	20	31763243	31763243	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31763243A>G	uc002wyo.1	+	5	512	c.441A>G	c.(439-441)AAA>AAG	p.K147K		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	147						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						TCAACCTGAAAGCCTCCTTGG	0.537													50	126					0	0	1	0	0
PLUNC	51297	broad.mit.edu	37	20	31825928	31825928	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31825928C>T	uc002wyv.2	+	3	298	c.228C>T	c.(226-228)ATC>ATT	p.I76I	PLUNC_uc002wyt.3_Silent_p.I76I|PLUNC_uc002wyu.3_Silent_p.I76I	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	76					innate immune response	extracellular region	lipid binding				0						TCCTGGACATCCTGAAGCCTG	0.562													28	75					0	0	1	0	0
C20orf114	92747	broad.mit.edu	37	20	31878790	31878790	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31878790C>T	uc002wyw.1	+	5	554	c.393C>T	c.(391-393)TTC>TTT	p.F131F	C20orf114_uc010gej.1_Silent_p.F131F	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	131						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						TCGTGGAGTTCCACATGACGA	0.637													7	33					0	0	1	0	0
CDK5RAP1	51654	broad.mit.edu	37	20	31967359	31967359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:31967359G>A	uc010gek.2	-	9	1181	c.1057C>T	c.(1057-1059)CGT>TGT	p.R353C	CDK5RAP1_uc002wyy.2_Missense_Mutation_p.R249C|CDK5RAP1_uc002wyz.2_Missense_Mutation_p.R339C|CDK5RAP1_uc002wza.2_Missense_Mutation_p.R339C|CDK5RAP1_uc010gel.2_Missense_Mutation_p.R248C|CDK5RAP1_uc010gem.2_Intron|CDK5RAP1_uc002wzc.1_Missense_Mutation_p.R339C	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	353					brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						TGAGCAAAACGAAGTCCTCCT	0.483													23	39					0	0	1	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32232418	32232418	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:32232418C>T	uc002wzg.1	+	12	2318	c.1781C>T	c.(1780-1782)GCT>GTT	p.A594V	CBFA2T2_uc010zug.1_Missense_Mutation_p.A368V|CBFA2T2_uc002wze.1_Missense_Mutation_p.A585V|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Missense_Mutation_p.A565V|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA|CBFA2T2_uc002wzk.1_Missense_Mutation_p.A142V	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	594						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						TCAACACCTGCTTCTGTGACA	0.627													28	139					0	0	1	0	0
NECAB3	63941	broad.mit.edu	37	20	32258570	32258570	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:32258570G>A	uc002wzn.3	-	3	289	c.183C>T	c.(181-183)TTC>TTT	p.F61F	NECAB3_uc002wzm.3_Silent_p.F61F|NECAB3_uc002wzo.3_RNA|NECAB3_uc002wzp.3_Silent_p.F12F|NECAB3_uc002wzq.3_Silent_p.F61F|NECAB3_uc002wzr.3_RNA|NECAB3_uc010geo.2_Silent_p.F61F	NM_031232	NP_112509	Q96P71	NECA3_HUMAN	N-terminal EF-hand calcium binding protein 3	61	EF-hand.				antibiotic biosynthetic process|protein metabolic process|protein secretion|regulation of amyloid precursor protein biosynthetic process	endoplasmic reticulum membrane|Golgi cis cisterna|nucleus	calcium ion binding|oxidoreductase activity|protein binding			lung(1)	1						AGTAATTCTGGAATTCCTCAA	0.592													13	40					0	0	1	0	0
E2F1	1869	broad.mit.edu	37	20	32264549	32264549	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:32264549G>A	uc002wzu.3	-	7	1443	c.1303C>T	c.(1303-1305)CTG>TTG	p.L435L	NECAB3_uc002wzm.3_5'Flank|NECAB3_uc002wzn.3_5'Flank|NECAB3_uc002wzo.3_5'Flank|NECAB3_uc002wzp.3_5'Flank|NECAB3_uc002wzq.3_5'Flank|NECAB3_uc002wzr.3_5'Flank|NECAB3_uc010geo.2_5'Flank	NM_005225	NP_005216	Q01094	E2F1_HUMAN	E2F transcription factor 1	435	Transactivation.				apoptosis|cell proliferation|G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|mRNA stabilization|negative regulation of transcription involved in G1/S phase of mitotic cell cycle|positive regulation of fibroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle	mitochondrion|Rb-E2F complex	sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding				0						CAGAAATCCAGGGGGGTGAGG	0.642													3	14					0	0	1	0	0
E2F1	1869	broad.mit.edu	37	20	32264687	32264687	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:32264687C>T	uc002wzu.3	-	7	1305	c.1165G>A	c.(1165-1167)GAG>AAG	p.E389K	NECAB3_uc002wzm.3_5'Flank|NECAB3_uc002wzn.3_5'Flank|NECAB3_uc002wzo.3_5'Flank|NECAB3_uc002wzp.3_5'Flank|NECAB3_uc002wzq.3_5'Flank|NECAB3_uc002wzr.3_5'Flank|NECAB3_uc010geo.2_5'Flank	NM_005225	NP_005216	Q01094	E2F1_HUMAN	E2F transcription factor 1	389	Transactivation.				apoptosis|cell proliferation|G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|mRNA stabilization|negative regulation of transcription involved in G1/S phase of mitotic cell cycle|positive regulation of fibroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle	mitochondrion|Rb-E2F complex	sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding				0						GAGAAGTCCTCCCGCACATGC	0.687													3	6					0	0	1	0	0
ZNF341	84905	broad.mit.edu	37	20	32341039	32341039	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:32341039C>T	uc002wzy.2	+	5	571	c.551C>T	c.(550-552)CCT>CTT	p.P184L	ZNF341_uc002wzx.2_Missense_Mutation_p.P184L|ZNF341_uc010geq.2_Missense_Mutation_p.P94L|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	184	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						cctcctccacctcctccacca	0.363													31	57					0	0	1	0	0
ZNF341	84905	broad.mit.edu	37	20	32371624	32371624	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:32371624C>T	uc002wzy.2	+	12	1826	c.1806C>T	c.(1804-1806)TTC>TTT	p.F602F	ZNF341_uc002wzx.2_Silent_p.F595F|ZNF341_uc010geq.2_Silent_p.F512F|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	602	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GCAAGAAGTTCTTCCGGCGGG	0.532													12	65					0	0	1	0	0
ZNF341	84905	broad.mit.edu	37	20	32378891	32378891	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:32378891C>T	uc002wzy.2	+	15	2153	c.2133C>T	c.(2131-2133)TTC>TTT	p.F711F	ZNF341_uc002wzx.2_Silent_p.F704F|ZNF341_uc010geq.2_Silent_p.F621F|ZNF341_uc010ger.2_RNA|ZNF341_uc002wzz.2_Silent_p.F138F	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	711					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ACTACAAGTTCCGCTGTGCTG	0.622													23	45					0	0	1	0	0
ZNF341	84905	broad.mit.edu	37	20	32379054	32379054	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:32379054C>T	uc002wzy.2	+	15	2316	c.2296C>T	c.(2296-2298)CCC>TCC	p.P766S	ZNF341_uc002wzx.2_Missense_Mutation_p.P759S|ZNF341_uc010geq.2_Missense_Mutation_p.P676S|ZNF341_uc010ger.2_RNA|ZNF341_uc002wzz.2_Missense_Mutation_p.P193S	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	766					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGTGCTGACCCCCTTGCCTGA	0.721													15	29					0	0	1	0	0
AHCY	191	broad.mit.edu	37	20	32879235	32879235	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:32879235G>A	uc002xai.2	-	5	687	c.548C>T	c.(547-549)TCC>TTC	p.S183F	AHCY_uc002xaj.2_Missense_Mutation_p.S155F	NM_000687	NP_000678	P23526	SAHH_HUMAN	adenosylhomocysteinase isoform 1	183					methylation|xenobiotic metabolic process	cytosol|melanosome	adenosylhomocysteinase activity|protein binding				0						CTTGGTGACGGAGTCATTGAC	0.572													44	96					0	0	1	0	0
ITCH	83737	broad.mit.edu	37	20	33027990	33027990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33027990C>T	uc010geu.1	+	10	1025	c.833C>T	c.(832-834)TCT>TTT	p.S278F	ITCH_uc002xak.2_Missense_Mutation_p.S237F|ITCH_uc010zuj.1_Missense_Mutation_p.S127F	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	278					apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						TCTGCCACTTCTGAAAGTGAT	0.358													10	60					0	0	1	0	0
PIGU	128869	broad.mit.edu	37	20	33162998	33162998	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33162998G>A	uc002xas.2	-	11	1304	c.1104C>T	c.(1102-1104)CTC>CTT	p.L368L	PIGU_uc010zul.1_Silent_p.L368L|PIGU_uc002xat.2_Silent_p.L348L	NM_080476	NP_536724	Q9H490	PIGU_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	368	Helical; (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|regulation of JAK-STAT cascade	GPI-anchor transamidase complex|plasma membrane					0						GGACAGGGAAGAGCAGGGAAC	0.493													8	66					0	0	1	0	0
NCOA6	23054	broad.mit.edu	37	20	33342596	33342596	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33342596G>A	uc002xav.2	-	9	4175	c.1604C>T	c.(1603-1605)TCG>TTG	p.S535L	NCOA6_uc002xaw.2_Missense_Mutation_p.S535L	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	535	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						TGCTGTGGTCGAAGGCACCTG	0.468													10	85					0	0	1	0	0
NCOA6	23054	broad.mit.edu	37	20	33345226	33345226	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33345226G>A	uc002xav.2	-	8	3896	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F	NCOA6_uc002xaw.2_Missense_Mutation_p.S442F|NCOA6_uc010gew.1_Missense_Mutation_p.S399F	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	442	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						CGTTGGGGAGGATGCAGGGGA	0.602													31	79					0	0	1	0	0
NCOA6	23054	broad.mit.edu	37	20	33345431	33345431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33345431G>A	uc002xav.2	-	8	3691	c.1120C>T	c.(1120-1122)CCT>TCT	p.P374S	NCOA6_uc002xaw.2_Missense_Mutation_p.P374S|NCOA6_uc010gew.1_Missense_Mutation_p.P331S	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	374	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.|Poly-Pro.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						GGATATGGAGGGGGAGGGTGG	0.562													54	90					0	0	1	0	0
GGT7	2686	broad.mit.edu	37	20	33433180	33433180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33433180G>A	uc002xay.2	-	15	1983	c.1940C>T	c.(1939-1941)GCT>GTT	p.A647V	GGT7_uc010gex.2_RNA	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	647	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						GTCCTTAACAGCGATGATGAA	0.577													21	43					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33572868	33572868	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33572868G>A	uc002xbi.1	+	11	960	c.868_splice	c.e11-1	p.G290_splice		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,							membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			TCTGCCCACAGGGCAAGTTCA	0.662													27	92					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33577900	33577900	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33577900G>A	uc002xbi.1	+	19	2069	c.1977G>A	c.(1975-1977)CAG>CAA	p.Q659Q	MIR499_hsa-mir-499|MI0003183_5'Flank	NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	617	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			AGAAGTCACAGAATAGGCTCC	0.547													55	103					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33578885	33578885	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33578885G>A	uc002xbi.1	+	22	2362	c.2270G>A	c.(2269-2271)GGG>GAG	p.G757E		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	715	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			TGCCGCCAAGGGTTCCCCAAC	0.652													17	46					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33584242	33584242	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33584242G>A	uc002xbi.1	+	27	3255	c.3163G>A	c.(3163-3165)GCC>ACC	p.A1055T		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1013	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CCACCAACAGGCCCTGGGTGA	0.657													18	17					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33586667	33586667	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33586667G>A	uc002xbi.1	+	33	4357	c.4265G>A	c.(4264-4266)AGC>AAC	p.S1422N		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1380	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CAGTGGAGGAGCAAGTACGAA	0.627													12	46					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33586675	33586675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33586675G>A	uc002xbi.1	+	33	4365	c.4273G>A	c.(4273-4275)GAA>AAA	p.E1425K		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1383	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			GAGCAAGTACGAAGCAGATGC	0.637													17	42					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33588192	33588192	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33588192G>A	uc002xbi.1	+	37	5096	c.5004G>A	c.(5002-5004)GAG>GAA	p.E1668E		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1626	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			AGAAGATGGAGGGTGACCTCA	0.657													43	95					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33589863	33589863	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33589863G>A	uc002xbi.1	+	42	6007	c.5915G>A	c.(5914-5916)CGG>CAG	p.R1972Q		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1930	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CTGCGGGCACGGACCCGGGAC	0.647											OREG0025884	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	41					0	0	1	0	0
PROCR	10544	broad.mit.edu	37	20	33764245	33764245	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33764245G>A	uc002xbt.2	+	3	781	c.597G>A	c.(595-597)ACG>ACA	p.T199T	EDEM2_uc010zuv.1_Intron|PROCR_uc010zuw.1_Silent_p.T236T	NM_006404	NP_006395	Q9UNN8	EPCR_HUMAN	endothelial protein C receptor precursor	199	Extracellular (Potential).				antigen processing and presentation|blood coagulation|immune response	integral to plasma membrane|MHC class I protein complex	receptor activity				0			BRCA - Breast invasive adenocarcinoma(18;0.0152)		Drotrecogin alfa(DB00055)	CGGAAAACACGAAAGGTATGA	0.547													28	70					0	0	1	0	0
MMP24	10893	broad.mit.edu	37	20	33842389	33842389	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33842389G>A	uc002xbu.2	+	4	652	c.649G>A	c.(649-651)GAG>AAG	p.E217K	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	217	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			TGACCGGAAGGAGGCAGACAT	0.537													63	230					0	0	1	0	0
MMP24	10893	broad.mit.edu	37	20	33851599	33851599	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33851599G>A	uc002xbu.2	+	5	826	c.823G>A	c.(823-825)GAC>AAC	p.D275N	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	275	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CACAGGGAACGACCTCTTCCT	0.522													8	9					0	0	1	0	0
FAM83C	128876	broad.mit.edu	37	20	33875446	33875446	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33875446G>A	uc010zux.1	-	4	1254	c.1136C>T	c.(1135-1137)TCG>TTG	p.S379L	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Intron	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	379										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			ACCCAGGGACGAGGACACCAC	0.632													11	25					0	0	1	0	0
FAM83C	128876	broad.mit.edu	37	20	33879667	33879667	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:33879667C>T	uc010zux.1	-	1	559	c.441G>A	c.(439-441)GTG>GTA	p.V147V	FAM83C_uc002xcb.1_5'UTR	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	147										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GGAAGTGGACCACAGCCTGGG	0.572													43	99					0	0	1	0	0
GDF5	8200	broad.mit.edu	37	20	34021740	34021740	+	Silent	SNP	C	T	T	rs146951838		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34021740C>T	uc010gfc.1	-	2	1714	c.1473G>A	c.(1471-1473)GAG>GAA	p.E491E	uc002xcj.2_Missense_Mutation_p.L51F|GDF5_uc002xck.1_Silent_p.E491E|GDF5_uc010zvc.1_Silent_p.E491E	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	491			E -> K (in SYM1).		cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CGACCATGTCCTCATACTGCT	0.587													35	69					0	0	1	0	0
GDF5	8200	broad.mit.edu	37	20	34022007	34022007	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34022007C>T	uc010gfc.1	-	2	1447	c.1206G>A	c.(1204-1206)CGG>CGA	p.R402R	uc002xcj.2_Missense_Mutation_p.P140S|GDF5_uc002xck.1_Silent_p.R402R|GDF5_uc010zvc.1_Silent_p.R402R	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	402					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			GCAGTGCCTTCCGACTGCAGC	0.607													39	124					0	0	1	0	0
GDF5	8200	broad.mit.edu	37	20	34025231	34025231	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34025231C>T	uc002xck.1	-	1	797	c.478G>A	c.(478-480)GAG>AAG	p.E160K	GDF5_uc010gfc.1_Missense_Mutation_p.E160K|GDF5_uc010zvc.1_Missense_Mutation_p.E160K	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	160					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CGAAACGGCTCCTTGGGCTCT	0.632													24	89					0	0	1	0	0
GDF5	8200	broad.mit.edu	37	20	34025289	34025289	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34025289G>A	uc002xck.1	-	1	739	c.420C>T	c.(418-420)GTC>GTT	p.V140V	GDF5_uc010gfc.1_Silent_p.V140V|GDF5_uc010zvc.1_Silent_p.V140V	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	140					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			AGGAGCTGGGGACAGATCCTG	0.647													36	84					0	0	1	0	0
CEP250	11190	broad.mit.edu	37	20	34061368	34061368	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34061368C>T	uc002xcm.2	+	14	2050	c.1379C>T	c.(1378-1380)TCT>TTT	p.S460F	CEP250_uc010zve.1_5'UTR|CEP250_uc010zvd.1_RNA	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	460	Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			GAGGTGGACTCTCTCAGCAAG	0.597													5	17					0	0	1	0	0
CEP250	11190	broad.mit.edu	37	20	34092618	34092618	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34092618C>T	uc002xcm.2	+	31	7092	c.6421C>T	c.(6421-6423)CTT>TTT	p.L2141F	CEP250_uc010zve.1_Missense_Mutation_p.L1509F	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	2141	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			ATCTCTAAAACTTGATTCTTT	0.557													7	95					0	0	1	0	0
CEP250	11190	broad.mit.edu	37	20	34096010	34096010	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34096010C>T	uc002xcm.2	+	33	7568	c.6897C>T	c.(6895-6897)ACC>ACT	p.T2299T	CEP250_uc010zve.1_Silent_p.T1667T	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	2299	Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding	p.T2299T(1)		ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			TGCGGAGTACCTTGGAGCAGG	0.493													49	100					0	0	1	0	0
SPAG4	6676	broad.mit.edu	37	20	34206880	34206880	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34206880G>A	uc002xdb.1	+	8	870	c.753G>A	c.(751-753)GAG>GAA	p.E251E	SPAG4_uc010zvi.1_Silent_p.E174E	NM_003116	NP_003107	Q9NPE6	SPAG4_HUMAN	sperm associated antigen 4	251					spermatogenesis	cilium|flagellar axoneme|integral to membrane	structural molecule activity				0	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			GGCTGAATGAGGATTTTGTGC	0.488													18	50					0	0	1	0	0
CPNE1	8904	broad.mit.edu	37	20	34215285	34215285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34215285G>A	uc002xdf.2	-	16	1516	c.1153C>T	c.(1153-1155)CTC>TTC	p.L385F	CPNE1_uc002xdc.2_Missense_Mutation_p.L47F|CPNE1_uc010zvj.1_Missense_Mutation_p.L390F|CPNE1_uc002xde.2_Missense_Mutation_p.L361F|CPNE1_uc002xdg.2_Missense_Mutation_p.L385F|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Missense_Mutation_p.L385F|CPNE1_uc002xdi.2_Missense_Mutation_p.L385F|CPNE1_uc002xdj.2_Missense_Mutation_p.L385F|CPNE1_uc002xdk.2_Missense_Mutation_p.L385F|CPNE1_uc002xdl.2_Missense_Mutation_p.L385F|CPNE1_uc002xdm.2_Missense_Mutation_p.L385F	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	385	VWFA.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			GGGCCATAGAGGCGAACTTGG	0.577													25	64					0	0	1	0	0
RBM12	10137	broad.mit.edu	37	20	34241243	34241243	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34241243G>A	uc002xdq.2	-	3	2234	c.2002C>T	c.(2002-2004)CCC>TCC	p.P668S	CPNE1_uc010zvj.1_Intron|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Missense_Mutation_p.P668S|RBM12_uc002xds.2_Missense_Mutation_p.P668S	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	668	Gly-rich.|Pro-rich.					nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CCTGCACCGGGAAGTCCTGCA	0.587													21	39					0	0	1	0	0
RBM12	10137	broad.mit.edu	37	20	34241738	34241738	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34241738G>A	uc002xdq.2	-	3	1739	c.1507C>T	c.(1507-1509)CAT>TAT	p.H503Y	CPNE1_uc010zvj.1_5'UTR|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Missense_Mutation_p.H503Y|RBM12_uc002xds.2_Missense_Mutation_p.H503Y	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	503	RRM 2.					nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			GTAATTGGATGAACTTGAATA	0.398													60	180					0	0	1	0	0
NFS1	9054	broad.mit.edu	37	20	34257603	34257603	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34257603G>A	uc002xdw.1	-	13	1379	c.1315C>T	c.(1315-1317)CTC>TTC	p.L439F	CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|NFS1_uc002xdt.1_Missense_Mutation_p.L379F|NFS1_uc002xdu.1_Missense_Mutation_p.L379F|NFS1_uc002xdv.1_RNA|NFS1_uc010zvk.1_Missense_Mutation_p.L237F|NFS1_uc010zvl.1_Missense_Mutation_p.L388F	NM_021100	NP_066923	Q9Y697	NFS1_HUMAN	NFS1 nitrogen fixation 1 precursor	439					cysteine metabolic process|iron incorporation into metallo-sulfur cluster|Mo-molybdopterin cofactor biosynthetic process|protein complex assembly|water-soluble vitamin metabolic process	cytosol|mitochondrial matrix|nucleus	cysteine desulfurase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.0886)		L-Alanine(DB00160)|L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	ATCTCCCAGAGAGGGCTGCCA	0.527													35	72					0	0	1	0	0
NFS1	9054	broad.mit.edu	37	20	34278402	34278402	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34278402G>A	uc002xdw.1	-	5	558	c.494C>T	c.(493-495)TCA>TTA	p.S165L	NFS1_uc002xdt.1_Missense_Mutation_p.S105L|NFS1_uc002xdu.1_Missense_Mutation_p.S105L|NFS1_uc002xdv.1_RNA|NFS1_uc010zvk.1_5'UTR|NFS1_uc010zvl.1_Intron	NM_021100	NP_066923	Q9Y697	NFS1_HUMAN	NFS1 nitrogen fixation 1 precursor	165					cysteine metabolic process|iron incorporation into metallo-sulfur cluster|Mo-molybdopterin cofactor biosynthetic process|protein complex assembly|water-soluble vitamin metabolic process	cytosol|mitochondrial matrix|nucleus	cysteine desulfurase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.0886)		L-Alanine(DB00160)|L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	AGCTTCCAGTGAACGGCAGGA	0.512													96	201					0	0	1	0	0
RBM39	9584	broad.mit.edu	37	20	34312576	34312576	+	Silent	SNP	G	A	A	rs151187023		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34312576G>A	uc002xeb.2	-	8	947	c.603C>T	c.(601-603)TTC>TTT	p.F201F	RBM39_uc002xdz.2_Silent_p.F177F|RBM39_uc002xea.2_Silent_p.F44F|RBM39_uc010gfn.2_Silent_p.F44F|RBM39_uc010zvm.1_Silent_p.F179F|RBM39_uc002xeg.2_Silent_p.F179F|RBM39_uc002xec.2_Silent_p.F201F|RBM39_uc002xed.2_5'UTR|RBM39_uc002xee.2_Silent_p.F44F|RBM39_uc002xef.2_Silent_p.F44F|RBM39_uc010zvn.1_Silent_p.F44F	NM_184234	NP_909122	Q14498	RBM39_HUMAN	RNA binding motif protein 39 isoform a	201	RRM 1.				mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	centrosome|nuclear speck	nucleotide binding|protein binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_epithelial(2;0.00295)|Lung NSC(9;0.00453)|Breast(12;0.00544)|all_lung(11;0.00676)					TAACATCGACGAACTCCACAT	0.413													42	83					0	0	1	0	0
PHF20	51230	broad.mit.edu	37	20	34487474	34487474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34487474C>T	uc002xek.1	+	10	1576	c.1465C>T	c.(1465-1467)CCG>TCG	p.P489S	PHF20_uc002xei.1_Missense_Mutation_p.P489S|PHF20_uc010gfo.1_Missense_Mutation_p.P489S|PHF20_uc002xej.1_Missense_Mutation_p.P373S	NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	489					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					AGAAGAGAGCCCGGGAAAGAG	0.512													19	56					0	0	1	0	0
PHF20	51230	broad.mit.edu	37	20	34502056	34502056	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34502056C>T	uc002xek.1	+	12	1873	c.1762C>T	c.(1762-1764)CAT>TAT	p.H588Y		NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	588					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GCCAGGGGTCCATATGAGCCC	0.537													30	61					0	0	1	0	0
PHF20	51230	broad.mit.edu	37	20	34526853	34526853	+	Silent	SNP	C	T	T	rs17347322	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34526853C>T	uc002xek.1	+	16	2646	c.2535C>T	c.(2533-2535)CGC>CGT	p.R845R		NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	845					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					AGAAGCCCCGCGCCTATTACC	0.632													4	51					0	0	1	0	0
PHF20	51230	broad.mit.edu	37	20	34528852	34528852	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34528852G>A	uc002xek.1	+	17	2890	c.2779G>A	c.(2779-2781)GGT>AGT	p.G927S		NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	927					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GCTGGACAGAGGTGGAGAGGG	0.532													41	89					0	0	1	0	0
C20orf152	140894	broad.mit.edu	37	20	34571961	34571961	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34571961C>T	uc002xes.1	+	5	621	c.465C>T	c.(463-465)TTC>TTT	p.F155F	C20orf152_uc002xer.1_Silent_p.F155F|C20orf152_uc010gfp.1_Intron			Q96M20	CT152_HUMAN	SubName: Full=C20orf152 protein;	155	cNMP.										0	Breast(12;0.00631)					GCTTTTATTTCATCTACCTGG	0.522													22	65					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34770216	34770216	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34770216C>T	uc002xfb.2	+	6	684	c.513C>T	c.(511-513)TTC>TTT	p.F171F	EPB41L1_uc002xeu.2_Silent_p.F109F|EPB41L1_uc010zvo.1_Silent_p.F171F|EPB41L1_uc002xev.2_Silent_p.F171F|EPB41L1_uc002xew.2_Silent_p.F74F|EPB41L1_uc002xex.2_Silent_p.F140F|EPB41L1_uc002xey.2_Silent_p.F171F|EPB41L1_uc002xez.2_Silent_p.F109F	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	171	FERM.				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					ATTTTGCCTTCACAGTCAAGT	0.577													27	61					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34773187	34773187	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34773187G>A	uc002xfb.2	+	7	886	c.715G>A	c.(715-717)GAG>AAG	p.E239K	EPB41L1_uc002xeu.2_Missense_Mutation_p.E177K|EPB41L1_uc010zvo.1_Missense_Mutation_p.E239K|EPB41L1_uc002xev.2_Missense_Mutation_p.E239K|EPB41L1_uc002xew.2_Missense_Mutation_p.E142K|EPB41L1_uc002xex.2_Missense_Mutation_p.E208K|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Missense_Mutation_p.E177K	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	239	FERM.				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					CTATGTCAGCGAGCTCCGCTT	0.587													17	46					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34775646	34775646	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34775646G>A	uc002xfb.2	+	8	1005	c.834G>A	c.(832-834)AAG>AAA	p.K278K	EPB41L1_uc002xeu.2_Silent_p.K216K|EPB41L1_uc010zvo.1_Silent_p.K278K|EPB41L1_uc002xev.2_Silent_p.K278K|EPB41L1_uc002xew.2_Silent_p.K181K|EPB41L1_uc002xex.2_Silent_p.K247K|EPB41L1_uc002xey.2_Silent_p.K205K|EPB41L1_uc002xez.2_Silent_p.K216K	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	278	FERM.				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					AGAATGCCAAGAAGCTTTCCA	0.537													12	35					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34778553	34778553	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34778553C>T	uc002xfb.2	+	11	1305	c.1134C>T	c.(1132-1134)TCC>TCT	p.S378S	EPB41L1_uc002xeu.2_Silent_p.S316S|EPB41L1_uc010zvo.1_Silent_p.S378S|EPB41L1_uc002xev.2_Silent_p.S378S|EPB41L1_uc002xew.2_Silent_p.S281S|EPB41L1_uc002xex.2_Silent_p.S347S|EPB41L1_uc002xey.2_Silent_p.S305S|EPB41L1_uc002xez.2_Silent_p.S316S	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	378	FERM.				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					GGCTGGTGTCCCCTGAGCCCC	0.632													18	44					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34782179	34782179	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34782179G>A	uc002xfb.2	+	12	1517	c.1346G>A	c.(1345-1347)GGG>GAG	p.G449E	EPB41L1_uc002xeu.2_Missense_Mutation_p.G387E|EPB41L1_uc010zvo.1_Missense_Mutation_p.G449E|EPB41L1_uc002xev.2_Missense_Mutation_p.G449E|EPB41L1_uc002xew.2_Missense_Mutation_p.G352E|EPB41L1_uc002xex.2_Missense_Mutation_p.G418E|EPB41L1_uc002xey.2_Missense_Mutation_p.G376E|EPB41L1_uc002xez.2_Missense_Mutation_p.G387E	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	449					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					CATGATGCAGGGCCTGACGGT	0.602													9	28					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34810239	34810239	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:34810239C>T	uc002xfb.2	+	21	2731	c.2560C>T	c.(2560-2562)CCT>TCT	p.P854S	EPB41L1_uc002xeu.2_Missense_Mutation_p.P752S|EPB41L1_uc002xev.2_Missense_Mutation_p.P853S|EPB41L1_uc002xew.2_Missense_Mutation_p.P745S|EPB41L1_uc002xex.2_Missense_Mutation_p.P674S|EPB41L1_uc002xey.2_Missense_Mutation_p.P604S|EPB41L1_uc002xez.2_Missense_Mutation_p.P752S|EPB41L1_uc010gfq.2_Missense_Mutation_p.P952S	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	854	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					ACTGCAGCATCCTGATATGCT	0.443													15	178					0	0	1	0	0
MYL9	10398	broad.mit.edu	37	20	35177519	35177519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35177519C>T	uc002xfl.1	+	4	480	c.386C>T	c.(385-387)ACC>ATC	p.T129I	uc002xfk.3_Intron|MYL9_uc002xfm.1_Missense_Mutation_p.T75I	NM_006097	NP_006088	P24844	MYL9_HUMAN	myosin regulatory light chain 9 isoform a	129	EF-hand 2.				axon guidance|muscle contraction|regulation of muscle contraction	cytosol|muscle myosin complex	calcium ion binding|structural constituent of muscle				0	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CTGCTCACCACCATGGGTGAC	0.582													23	60					0	0	1	0	0
TGIF2	60436	broad.mit.edu	37	20	35219337	35219337	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35219337C>T	uc002xfn.2	+	3	390	c.217C>T	c.(217-219)CGG>TGG	p.R73W	C20orf24_uc002xfo.2_Intron	NM_021809	NP_068581	Q9GZN2	TGIF2_HUMAN	TGFB-induced factor homeobox 2	73	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)|skin(1)	2	Breast(12;0.114)	Myeloproliferative disorder(115;0.00878)				CATCAATGCCCGGCGGCGGCT	0.438													41	348					0	0	1	0	0
DSN1	79980	broad.mit.edu	37	20	35390870	35390870	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35390870G>A	uc010gfr.2	-	6	957	c.584C>T	c.(583-585)TCA>TTA	p.S195L	DSN1_uc002xfz.2_Missense_Mutation_p.S195L|DSN1_uc002xfy.3_5'UTR|DSN1_uc002xga.2_Missense_Mutation_p.S195L|DSN1_uc010zvs.1_Missense_Mutation_p.S88L|DSN1_uc002xgc.2_Missense_Mutation_p.S179L|DSN1_uc002xgb.2_Missense_Mutation_p.S179L	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	195					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				TTACCCATTTGAATCTTCAAA	0.279													13	41					0	0	1	0	0
C20orf118	140711	broad.mit.edu	37	20	35504607	35504607	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35504607G>A	uc002xgg.1	+	1	38	c.30G>A	c.(28-30)CGG>CGA	p.R10R		NM_080628	NP_542195	A0PJX2	CT118_HUMAN	hypothetical protein LOC140711	10											0		Myeloproliferative disorder(115;0.00874)				GTTACACTCGGCTGGTAAGGG	0.637													13	132					0	0	1	0	0
C20orf118	140711	broad.mit.edu	37	20	35506332	35506332	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35506332G>A	uc002xgg.1	+	2	72	c.64G>A	c.(64-66)GAG>AAG	p.E22K		NM_080628	NP_542195	A0PJX2	CT118_HUMAN	hypothetical protein LOC140711	22											0		Myeloproliferative disorder(115;0.00874)				CCTGTCTggggaggagggtaa	0.507													10	76					0	0	1	0	0
C20orf118	140711	broad.mit.edu	37	20	35506399	35506399	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35506399C>T	uc002xgg.1	+	2	139	c.131C>T	c.(130-132)CCC>CTC	p.P44L		NM_080628	NP_542195	A0PJX2	CT118_HUMAN	hypothetical protein LOC140711	44											0		Myeloproliferative disorder(115;0.00874)				CCTGAGGATCCCACGGTGCCC	0.493													21	73					0	0	1	0	0
C20orf118	140711	broad.mit.edu	37	20	35507460	35507460	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35507460C>T	uc002xgg.1	+	3	214	c.206C>T	c.(205-207)CCA>CTA	p.P69L		NM_080628	NP_542195	A0PJX2	CT118_HUMAN	hypothetical protein LOC140711	69											0		Myeloproliferative disorder(115;0.00874)				TTTCACTTCCCACCAAGAGTC	0.622													61	177					0	0	1	0	0
SAMHD1	25939	broad.mit.edu	37	20	35563557	35563557	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35563557G>A	uc002xgh.1	-	4	514	c.384C>T	c.(382-384)CTC>CTT	p.L128L		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	128					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				GGAGAGGGTGGAGCTCAATGT	0.398													37	77					0	0	1	0	0
C20orf132	140699	broad.mit.edu	37	20	35752159	35752159	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35752159C>T	uc010zvu.1	-	17	1950	c.1859G>A	c.(1858-1860)CGA>CAA	p.R620Q	C20orf132_uc002xgk.2_Missense_Mutation_p.R242Q	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				CGTAGCTGCTCGAAGCCTGTT	0.483													6	33					0	0	1	0	0
C20orf132	140699	broad.mit.edu	37	20	35802490	35802491	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35802490_35802491GG>AA	uc010zvu.1	-	5	407_408	c.316_317CC>TT	c.(316-318)CCC>TTC	p.P106F	C20orf132_uc002xgm.2_Missense_Mutation_p.P106F|C20orf132_uc002xgn.2_Missense_Mutation_p.P106F	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	16											0		Myeloproliferative disorder(115;0.00878)				ATAGGCACAGGGGATCACTACT	0.391													8	27					0	0	1	0	0
RPN2	6185	broad.mit.edu	37	20	35860728	35860728	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35860728C>T	uc002xgp.2	+	14	1915	c.1611C>T	c.(1609-1611)CCC>CCT	p.P537P	RPN2_uc002xgq.2_Silent_p.P505P	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	537	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AGAAGAGGCCCCCCACCGTGG	0.572													39	179					0	0	1	0	0
GHRH	2691	broad.mit.edu	37	20	35885233	35885233	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:35885233G>A	uc002xgr.2	-	1	60	c.60C>T	c.(58-60)TCC>TCT	p.S20S	GHRH_uc002xgs.2_Silent_p.S20S|GHRH_uc002xgt.2_Silent_p.S20S	NM_021081	NP_066567	P01286	SLIB_HUMAN	growth hormone releasing hormone preproprotein	20					activation of adenylate cyclase activity by G-protein signaling pathway|adenohypophysis development|growth hormone secretion|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of circadian sleep/wake cycle, REM sleep|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to food	extracellular space|terminal button	growth hormone-releasing hormone activity|growth hormone-releasing hormone receptor binding			ovary(1)	1		Myeloproliferative disorder(115;0.00878)				GGGGAGGTGGGGAGCAGTGGG	0.597													8	13					0	0	1	0	0
SRC	6714	broad.mit.edu	37	20	36030030	36030030	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36030030G>A	uc002xgx.2	+	11	1514	c.1065G>A	c.(1063-1065)GGG>GGA	p.G355G	SRC_uc002xgy.2_Silent_p.G355G	NM_005417	NP_005408	P12931	SRC_HUMAN	proto-oncogene tyrosine-protein kinase SRC	355	Protein kinase.				axon guidance|bone resorption|cell junction assembly|cellular membrane organization|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular protein kinase cascade|leukocyte migration|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of integrin activation|Ras protein signal transduction|regulation of bone resorption|regulation of vascular permeability|response to interleukin-1|signal complex assembly|T cell costimulation	caveola|cytosol|mitochondrial inner membrane	ATP binding|heme binding|integrin binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|SH3/SH2 adaptor activity			large_intestine(10)|lung(1)|central_nervous_system(1)|endometrium(1)	13		Myeloproliferative disorder(115;0.00878)			Dasatinib(DB01254)	TTCTCAAGGGGGAGACAGGCA	0.622													21	79					0	0	1	0	0
CTNNBL1	56259	broad.mit.edu	37	20	36361338	36361338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36361338C>T	uc010zvw.1	+	2	179	c.88C>T	c.(88-90)CGG>TGG	p.R30W	CTNNBL1_uc010zvv.1_Missense_Mutation_p.R3W	NM_030877	NP_110517	Q8WYA6	CTBL1_HUMAN	beta catenin-like 1	30					apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)				GAAGATGCGTCGGAAACAAAC	0.478													20	62					0	0	1	0	0
CTNNBL1	56259	broad.mit.edu	37	20	36468525	36468525	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36468525C>T	uc010zvw.1	+	13	1326	c.1235C>T	c.(1234-1236)GCT>GTT	p.A412V	CTNNBL1_uc002xhh.2_Missense_Mutation_p.A225V|CTNNBL1_uc002xhi.2_RNA|CTNNBL1_uc002xhj.2_Missense_Mutation_p.A160V	NM_030877	NP_110517	Q8WYA6	CTBL1_HUMAN	beta catenin-like 1	412					apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)				TCGATCCTGGCTTCCCTCCTG	0.493													18	47					0	0	1	0	0
CTNNBL1	56259	broad.mit.edu	37	20	36488689	36488689	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36488689C>T	uc010zvw.1	+	16	1637	c.1546C>T	c.(1546-1548)CAC>TAC	p.H516Y	CTNNBL1_uc002xhh.2_Missense_Mutation_p.H329Y|CTNNBL1_uc002xhi.2_RNA|CTNNBL1_uc002xhj.2_Missense_Mutation_p.H264Y	NM_030877	NP_110517	Q8WYA6	CTBL1_HUMAN	beta catenin-like 1	516					apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)				CCAGAGGGTTCACCAGATCCT	0.428													62	129					0	0	1	0	0
CTNNBL1	56259	broad.mit.edu	37	20	36500359	36500359	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36500359C>T	uc010zvw.1	+	17	1727	c.1636C>T	c.(1636-1638)CCG>TCG	p.P546S	CTNNBL1_uc002xhh.2_Missense_Mutation_p.P359S|CTNNBL1_uc002xhi.2_RNA|CTNNBL1_uc002xhj.2_Missense_Mutation_p.P294S	NM_030877	NP_110517	Q8WYA6	CTBL1_HUMAN	beta catenin-like 1	546					apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)				CGGCCGGAGCCCGGAGTTCCG	0.597													17	69					0	0	1	0	0
VSTM2L	128434	broad.mit.edu	37	20	36572431	36572431	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36572431C>T	uc002xhk.3	+	4	645	c.391C>T	c.(391-393)CGG>TGG	p.R131W		NM_080607	NP_542174	Q96N03	VTM2L_HUMAN	V-set and transmembrane domain containing 2 like	131	Ig-like.									ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				GCGCCTGTCCCGGGTGAAGCC	0.642													3	25					0	0	1	0	0
KIAA0406	9675	broad.mit.edu	37	20	36641014	36641014	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36641014G>A	uc002xhl.2	-	3	1414	c.1205C>T	c.(1204-1206)TCC>TTC	p.S402F	KIAA0406_uc002xhm.2_Missense_Mutation_p.S402F	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	402							binding				0		Myeloproliferative disorder(115;0.00874)				AAGTAACAAGGAAAGAGTAGA	0.478													45	84					0	0	1	0	0
KIAA0406	9675	broad.mit.edu	37	20	36641484	36641484	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36641484G>A	uc002xhl.2	-	3	944	c.735C>T	c.(733-735)TTC>TTT	p.F245F	KIAA0406_uc002xhm.2_Silent_p.F245F	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	245							binding				0		Myeloproliferative disorder(115;0.00874)				CAGCCATAATGAAGCTCACTG	0.433													72	168					0	0	1	0	0
KIAA0406	9675	broad.mit.edu	37	20	36642158	36642158	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36642158G>A	uc002xhl.2	-	3	270	c.61C>T	c.(61-63)CTC>TTC	p.L21F	KIAA0406_uc002xhm.2_Missense_Mutation_p.L21F	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	21							binding				0		Myeloproliferative disorder(115;0.00874)				GTCTTTGTGAGCTGAACACAG	0.507													24	161					0	0	1	0	0
RPRD1B	58490	broad.mit.edu	37	20	36676878	36676878	+	Missense_Mutation	SNP	C	T	T	rs140300358		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36676878C>T	uc002xho.3	+	3	812	c.410C>T	c.(409-411)CCC>CTC	p.P137L		NM_021215	NP_067038	Q9NQG5	RPR1B_HUMAN	Regulation of nuclear pre-mRNA domain containing	137										pancreas(1)	1						AGCCCTCCCCCCAAAGGTAGA	0.478													16	64					0	0	1	0	0
TGM2	7052	broad.mit.edu	37	20	36784456	36784456	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36784456G>A	uc002xhr.2	-	3	326	c.226C>T	c.(226-228)CGT>TGT	p.R76C	TGM2_uc010zvx.1_Intron|TGM2_uc010zvy.1_Missense_Mutation_p.R16C|TGM2_uc002xhs.1_Intron|TGM2_uc002xht.2_Missense_Mutation_p.R76C|TGM2_uc002xhu.3_Missense_Mutation_p.R76C	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	76					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	AGTGGAAAACGGGCCTTGGTC	0.532													5	21					0	0	1	0	0
TGM2	7052	broad.mit.edu	37	20	36789956	36789956	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36789956C>T	uc002xhr.2	-	2	156	c.56G>A	c.(55-57)CGA>CAA	p.R19Q	TGM2_uc010zvx.1_Missense_Mutation_p.R19Q|TGM2_uc010zvy.1_Intron|TGM2_uc002xhs.1_Missense_Mutation_p.R19Q|TGM2_uc002xht.2_Missense_Mutation_p.R19Q|TGM2_uc002xhu.3_Missense_Mutation_p.R19Q	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	19					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	GTGGTGGTCTCGGCCATTGGT	0.622													38	94					0	0	1	0	0
KIAA1755	85449	broad.mit.edu	37	20	36845839	36845839	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36845839G>A	uc002xhy.1	-	13	2989	c.2717C>T	c.(2716-2718)GCC>GTC	p.A906V	KIAA1755_uc002xhv.1_5'UTR|KIAA1755_uc002xhw.1_5'UTR|KIAA1755_uc002xhx.1_Missense_Mutation_p.A184V	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	906										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				CAGCTGAGCGGCCTGCTTGGA	0.692													8	19					0	0	1	0	0
KIAA1755	85449	broad.mit.edu	37	20	36848065	36848065	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36848065G>A	uc002xhy.1	-	11	2795	c.2523C>T	c.(2521-2523)GTC>GTT	p.V841V	KIAA1755_uc002xhv.1_5'Flank|KIAA1755_uc002xhw.1_5'Flank|KIAA1755_uc002xhx.1_Silent_p.V119V	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	841										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				GGCCCAGGCGGACACGGAGCT	0.622													27	95					0	0	1	0	0
KIAA1755	85449	broad.mit.edu	37	20	36859727	36859727	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36859727C>T	uc002xhy.1	-	5	2020	c.1748G>A	c.(1747-1749)GGT>GAT	p.G583D	KIAA1755_uc002xhz.1_Missense_Mutation_p.G583D	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	583										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				GTCCCGGCCACCTGGAGGACA	0.507													3	4					0	0	1	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869693	36869693	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36869693G>A	uc002xhy.1	-	3	1112	c.840C>T	c.(838-840)GGC>GGT	p.G280G	KIAA1755_uc002xhz.1_Silent_p.G280G	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	280										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				CTTGGGAAAAGCCTAGGAGAG	0.567													44	97					0	0	1	0	0
KIAA1755	85449	broad.mit.edu	37	20	36870251	36870251	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36870251G>A	uc002xhy.1	-	3	554	c.282C>T	c.(280-282)CCC>CCT	p.P94P	KIAA1755_uc002xhz.1_Silent_p.P94P	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	94										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				GAGGGTTGAGGGGTGCCAAGT	0.572													25	74					0	0	1	0	0
BPI	671	broad.mit.edu	37	20	36940319	36940319	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36940319C>T	uc002xib.2	+	5	654	c.592C>T	c.(592-594)CGA>TGA	p.R198*		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	198					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				GTCTGCGCTTCGAAACAAGAT	0.507													10	83					0	0	1	0	0
BPI	671	broad.mit.edu	37	20	36952410	36952410	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36952410G>A	uc002xib.2	+	8	969	c.907G>A	c.(907-909)GAG>AAG	p.E303K		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	303					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				TGTATACCAAGAGGCTGGGGT	0.562													11	43					0	0	1	0	0
BPI	671	broad.mit.edu	37	20	36954816	36954816	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36954816C>T	uc002xib.2	+	10	1217	c.1155C>T	c.(1153-1155)TCC>TCT	p.S385S		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	385					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				CCCTGGCTTCCCTCTTCCTGA	0.433													11	29					0	0	1	0	0
LBP	3929	broad.mit.edu	37	20	36979297	36979297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36979297C>T	uc002xic.1	+	3	358	c.323C>T	c.(322-324)TCC>TTC	p.S108F		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	108					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				ATCTCCGACTCCTCCATCCGG	0.612													29	69					0	0	1	0	0
LBP	3929	broad.mit.edu	37	20	36993269	36993269	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:36993269C>T	uc002xic.1	+	8	819	c.784C>T	c.(784-786)CTC>TTC	p.L262F		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	262					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				TCCAGTTACCCTCCTTGCTGC	0.493													61	145					0	0	1	0	0
RALGAPB	57148	broad.mit.edu	37	20	37146532	37146532	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:37146532C>T	uc002xiw.2	+	9	1563	c.1306C>T	c.(1306-1308)CGG>TGG	p.R436W	RALGAPB_uc010zvz.1_Missense_Mutation_p.R436W|RALGAPB_uc002xix.2_Missense_Mutation_p.R436W|RALGAPB_uc002xiy.1_Missense_Mutation_p.R436W|RALGAPB_uc002xiz.2_Missense_Mutation_p.R214W|RALGAPB_uc002xja.1_Missense_Mutation_p.R163W	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	436					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						GCCTGCCCCTCGGAGACCAAA	0.468													41	75					0	0	1	0	0
SLC32A1	140679	broad.mit.edu	37	20	37353567	37353567	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:37353567G>A	uc002xjc.2	+	1	463	c.200G>A	c.(199-201)GGA>GAA	p.G67E		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	67	Cytoplasmic (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	AAAGCCGAGGGAGAGCCCTGC	0.677													5	42					0	0	1	0	0
SLC32A1	140679	broad.mit.edu	37	20	37356289	37356289	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:37356289C>T	uc002xjc.2	+	2	848	c.585C>T	c.(583-585)GCC>GCT	p.A195A		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	195	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	CCTGCTGCGCCCCGCGCTTCC	0.637													15	36					0	0	1	0	0
SLC32A1	140679	broad.mit.edu	37	20	37356729	37356729	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:37356729G>A	uc002xjc.2	+	2	1288	c.1025G>A	c.(1024-1026)TGG>TAG	p.W342*		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	342	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	ATGATGAACTGGACGCACATC	0.592													15	47					0	0	1	0	0
ACTR5	79913	broad.mit.edu	37	20	37400247	37400247	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:37400247C>T	uc002xjd.2	+	9	1637	c.1612C>T	c.(1612-1614)CGT>TGT	p.R538C		NM_024855	NP_079131	Q9H9F9	ARP5_HUMAN	ARP5 actin-related protein 5 homolog	538					DNA recombination|double-strand break repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent|UV-damage excision repair	cytoplasm|Ino80 complex	ATP binding|protein binding				0		Myeloproliferative disorder(115;0.00878)				GTACGGTGCTCGTGACTGGGC	0.507													30	73					0	0	1	0	0
PPP1R16B	26051	broad.mit.edu	37	20	37536457	37536457	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:37536457G>A	uc002xje.2	+	9	1096	c.907G>A	c.(907-909)GAG>AAG	p.E303K	PPP1R16B_uc010ggc.2_Missense_Mutation_p.E261K	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	303					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AGACCTGTGCGAGGAGGAAGA	0.592													32	58					0	0	1	0	0
PPP1R16B	26051	broad.mit.edu	37	20	37546855	37546855	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:37546855G>A	uc002xje.2	+	11	1439	c.1250G>A	c.(1249-1251)CGA>CAA	p.R417Q	PPP1R16B_uc010ggc.2_Missense_Mutation_p.R375Q	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	417					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AAGATCCCACGAGGTGAACTG	0.572													46	184					0	0	1	0	0
TOP1	7150	broad.mit.edu	37	20	39729862	39729862	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:39729862C>T	uc002xjl.2	+	13	1423	c.1177C>T	c.(1177-1179)CCT>TCT	p.P393S	uc002xjn.1_RNA	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	393					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	TGCCAAGGTTCCTTCTCCTCC	0.443			T	NUP98	AML*								50	72					0	0	1	0	0
PLCG1	5335	broad.mit.edu	37	20	39792036	39792036	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:39792036C>T	uc002xjp.1	+	9	929	c.808C>T	c.(808-810)CGC>TGC	p.R270C	PLCG1_uc002xjo.1_Missense_Mutation_p.R270C|PLCG1_uc010zwe.1_5'Flank|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	270					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				GGCTGTTGATCGCCTCCAGGT	0.602													22	56					0	0	1	0	0
PLCG1	5335	broad.mit.edu	37	20	39793585	39793585	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:39793585C>T	uc002xjp.1	+	13	1351	c.1230C>T	c.(1228-1230)ATC>ATT	p.I410I	PLCG1_uc002xjo.1_Silent_p.I410I|PLCG1_uc010zwe.1_Silent_p.I36I|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	410	PI-PLC X-box.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				ACCCAGTCATCCTGTCCATTG	0.547													27	48					0	0	1	0	0
LPIN3	64900	broad.mit.edu	37	20	39978721	39978721	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:39978721C>T	uc002xjx.2	+	7	877	c.786C>T	c.(784-786)TCC>TCT	p.S262S	LPIN3_uc010ggh.2_Silent_p.S263S|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	262					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				GGCCCGAGTCCTCAGTGGTCC	0.627													3	11					0	0	1	0	0
LPIN3	64900	broad.mit.edu	37	20	39986644	39986644	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:39986644C>T	uc002xjx.2	+	17	2253	c.2162C>T	c.(2161-2163)TCT>TTT	p.S721F	LPIN3_uc010ggh.2_Missense_Mutation_p.S722F|LPIN3_uc010zwf.1_Intron	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	721	C-LIP.				fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				ATCCTTCTGTCTCCCAGCAGC	0.672													21	84					0	0	1	0	0
LPIN3	64900	broad.mit.edu	37	20	39987429	39987429	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:39987429C>T	uc002xjx.2	+	20	2570	c.2479C>T	c.(2479-2481)CTG>TTG	p.L827L	LPIN3_uc010ggh.2_Silent_p.L828L|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	827					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				CAGCACAGACCTGGCCAACCC	0.617													12	135					0	0	1	0	0
EMILIN3	90187	broad.mit.edu	37	20	39990859	39990859	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:39990859C>T	uc002xjy.1	-	4	1574	c.1350G>A	c.(1348-1350)AGG>AGA	p.R450R		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	450						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GACAGCATCCCCTTGCTCCAC	0.632													66	111					0	0	1	0	0
EMILIN3	90187	broad.mit.edu	37	20	39990959	39990959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:39990959C>T	uc002xjy.1	-	4	1474	c.1250G>A	c.(1249-1251)GGG>GAG	p.G417E		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	417						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				AAGCTCATCCCCGGCCGGGGC	0.642													7	106					0	0	1	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991461	39991461	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:39991461C>T	uc002xjy.1	-	4	972	c.748G>A	c.(748-750)GAG>AAG	p.E250K		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	250						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				CTTAGGATCTCGTCTAAGGGA	0.602													18	55					0	0	1	0	0
CHD6	84181	broad.mit.edu	37	20	40033909	40033909	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40033909G>A	uc002xka.1	-	37	7650	c.7472C>T	c.(7471-7473)CCC>CTC	p.P2491L	CHD6_uc002xjz.1_Missense_Mutation_p.P28L	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2491					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CCCGGTGAGGGGGATGCCTGG	0.562													8	91					0	0	1	0	0
CHD6	84181	broad.mit.edu	37	20	40044087	40044087	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40044087G>A	uc002xka.1	-	34	6856	c.6678C>T	c.(6676-6678)TCC>TCT	p.S2226S	CHD6_uc002xjz.1_5'Flank	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2226					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TGGCTCCTGGGGACCCCTCTG	0.597													8	12					0	0	1	0	0
CHD6	84181	broad.mit.edu	37	20	40113039	40113039	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40113039G>A	uc002xka.1	-	15	2388	c.2210C>T	c.(2209-2211)ACC>ATC	p.T737I	CHD6_uc002xkd.2_Missense_Mutation_p.T715I	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	737					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CTCCATCATGGTGTTGATGAG	0.493													58	163					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40710658	40710658	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40710658C>T	uc002xkg.2	-	30	4321	c.4137_splice	c.e30-1	p.L1379_splice	PTPRT_uc010ggj.2_Splice_Site_p.L1398_splice|PTPRT_uc010ggi.2_Splice_Site_p.L582_splice	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T						homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TCCCCCATTTCTAAACACAGA	0.498													20	75					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40713344	40713344	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40713344C>T	uc002xkg.2	-	29	4298	c.4114G>A	c.(4114-4116)GGA>AGA	p.G1372R	PTPRT_uc010ggj.2_Missense_Mutation_p.G1391R|PTPRT_uc010ggi.2_Missense_Mutation_p.G575R	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1372	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACAGTACGTCCCTCCCTCCCG	0.607													8	31					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40714389	40714389	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40714389G>A	uc002xkg.2	-	28	4135	c.3951C>T	c.(3949-3951)TTC>TTT	p.F1317F	PTPRT_uc010ggj.2_Silent_p.F1336F|PTPRT_uc010ggi.2_Silent_p.F520F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1317	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TACAGATGCGGAATATTCTGT	0.587													6	91					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40739002	40739002	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40739002C>T	uc002xkg.2	-	23	3409	c.3225G>A	c.(3223-3225)CCG>CCA	p.P1075P	PTPRT_uc010ggj.2_Silent_p.P1094P|PTPRT_uc010ggi.2_Silent_p.P278P	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1075	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCCCAGCTTCCGGGGGGTTGA	0.448													13	50					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40743889	40743889	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40743889C>T	uc002xkg.2	-	22	3233	c.3049G>A	c.(3049-3051)GAA>AAA	p.E1017K	PTPRT_uc010ggj.2_Missense_Mutation_p.E1036K|PTPRT_uc010ggi.2_Missense_Mutation_p.E220K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1017	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGCTCTGTTTCAATCAGGGTG	0.483													33	84					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40790001	40790001	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40790001C>T	uc002xkg.2	-	17	2857	c.2673G>A	c.(2671-2673)GAG>GAA	p.E891E	PTPRT_uc010ggj.2_Silent_p.E910E|PTPRT_uc010ggi.2_Silent_p.E94E	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	891	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CCTCGTATTCCTCCTTGAACC	0.478													30	61					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40790031	40790031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40790031C>T	uc002xkg.2	-	17	2827	c.2643G>A	c.(2641-2643)ATG>ATA	p.M881I	PTPRT_uc010ggj.2_Missense_Mutation_p.M900I|PTPRT_uc010ggi.2_Missense_Mutation_p.M84I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	881	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGCCTCTCTTCATCTGCGTGA	0.562													28	73					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40944474	40944474	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40944474G>A	uc002xkg.2	-	12	2212	c.2028C>T	c.(2026-2028)ACC>ACT	p.T676T	PTPRT_uc010ggj.2_Silent_p.T676T	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	676	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TAAATGGCTGGGTGACAGGCA	0.517													52	90					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40979312	40979312	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40979312G>A	uc002xkg.2	-	11	2005	c.1821C>T	c.(1819-1821)ATC>ATT	p.I607I	PTPRT_uc010ggj.2_Silent_p.I607I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	607	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCATCACTGTGATGGTCGTGT	0.532													44	105					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40980844	40980844	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40980844C>T	uc002xkg.2	-	10	1826	c.1642G>A	c.(1642-1644)GAA>AAA	p.E548K	PTPRT_uc010ggj.2_Missense_Mutation_p.E548K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	548	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGGTGGGTTTCATTCCGGAGC	0.572													10	104					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40980866	40980866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40980866C>T	uc002xkg.2	-	10	1804	c.1620G>A	c.(1618-1620)GGG>GGA	p.G540G	PTPRT_uc010ggj.2_Silent_p.G540G	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	540	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGAACACTTTCCCCCTCTGGC	0.527													29	90					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40980903	40980903	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:40980903G>A	uc002xkg.2	-	10	1767	c.1583C>T	c.(1582-1584)TCG>TTG	p.S528L	PTPRT_uc010ggj.2_Missense_Mutation_p.S528L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	528	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGGGTCCAGCGAGCCGACAGC	0.532													34	56					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41100936	41100936	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:41100936C>T	uc002xkg.2	-	8	1604	c.1420G>A	c.(1420-1422)GAG>AAG	p.E474K	PTPRT_uc010ggj.2_Missense_Mutation_p.E474K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	474	Extracellular (Potential).|Fibronectin type-III 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACCAGCTCCTCGCTCTCCATT	0.587													14	96					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41306651	41306651	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:41306651C>T	uc002xkg.2	-	7	1192	c.1008G>A	c.(1006-1008)GAG>GAA	p.E336E	PTPRT_uc010ggj.2_Silent_p.E336E	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	336	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CTATGTGGGTCTCTGCCCACG	0.552													41	92					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41306689	41306689	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:41306689C>T	uc002xkg.2	-	7	1154	c.970G>A	c.(970-972)GAA>AAA	p.E324K	PTPRT_uc010ggj.2_Missense_Mutation_p.E324K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	324	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TATTCCACTTCCTTCAGGATG	0.567													30	68					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41306738	41306738	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:41306738G>A	uc002xkg.2	-	7	1105	c.921C>T	c.(919-921)ATC>ATT	p.I307I	PTPRT_uc010ggj.2_Silent_p.I307I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	307	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CATTTGGCTTGATCCACAGGT	0.552													11	36					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41400142	41400142	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:41400142C>T	uc002xkg.2	-	5	801	c.617G>A	c.(616-618)GGG>GAG	p.G206E	PTPRT_uc010ggj.2_Missense_Mutation_p.G206E	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	206	Extracellular (Potential).|Ig-like C2-type.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGCATTCTGCCCCACATTCAC	0.493													56	164					0	0	1	0	0
SFRS6	6431	broad.mit.edu	37	20	42088473	42088473	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42088473C>T	uc010zwg.1	+	3	489	c.319C>T	c.(319-321)CGT>TGT	p.R107C	SFRS6_uc002xki.2_5'UTR|SFRS6_uc002xkk.2_Missense_Mutation_p.R107C	NM_006275	NP_006266	Q13247	SRSF6_HUMAN	arginine/serine-rich splicing factor 6	107					mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			ACCACCTGTTCGTACAGAATA	0.393													37	111					0	0	1	0	0
L3MBTL	26013	broad.mit.edu	37	20	42161469	42161469	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42161469G>A	uc010zwh.1	+	12	1321	c.1275G>A	c.(1273-1275)ATG>ATA	p.M425I	L3MBTL_uc002xkl.2_Missense_Mutation_p.M357I|L3MBTL_uc002xkm.2_Missense_Mutation_p.M357I|L3MBTL_uc010ggl.2_Missense_Mutation_p.M357I|L3MBTL_uc002xkn.1_Missense_Mutation_p.M116I|L3MBTL_uc002xko.2_Missense_Mutation_p.M9I	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	357	MBT 2.				chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TTGACCGCATGAACCCGTCCC	0.587													17	212					0	0	1	0	0
L3MBTL	26013	broad.mit.edu	37	20	42162048	42162048	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42162048C>T	uc010zwh.1	+	13	1483	c.1437C>T	c.(1435-1437)ACC>ACT	p.T479T	L3MBTL_uc002xkl.2_Silent_p.T411T|L3MBTL_uc002xkm.2_Silent_p.T411T|L3MBTL_uc010ggl.2_Silent_p.T411T|L3MBTL_uc002xkn.1_Silent_p.T170T|L3MBTL_uc002xko.2_Silent_p.T63T	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	411	MBT 2.				chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			AGCCCCTCACCCCTCCACAAG	0.592													14	62					0	0	1	0	0
L3MBTL	26013	broad.mit.edu	37	20	42168793	42168793	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42168793C>T	uc010zwh.1	+	20	2156	c.2110C>T	c.(2110-2112)CTC>TTC	p.L704F	L3MBTL_uc002xkl.2_Missense_Mutation_p.L636F|L3MBTL_uc002xkm.2_Missense_Mutation_p.L636F|L3MBTL_uc010ggl.2_Missense_Mutation_p.L641F|L3MBTL_uc002xkn.1_Missense_Mutation_p.L395F|L3MBTL_uc002xko.2_Missense_Mutation_p.L288F|L3MBTL_uc002xkp.2_Missense_Mutation_p.L24F|SGK2_uc002xkq.1_5'UTR	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	636					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CTTTCCAGCCCTCACGCCCGA	0.612													12	49					0	0	1	0	0
SGK2	10110	broad.mit.edu	37	20	42195138	42195138	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42195138G>A	uc002xkv.2	+	1	402	c.183G>A	c.(181-183)ATG>ATA	p.M61I	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Missense_Mutation_p.M1I|SGK2_uc010ggm.2_Missense_Mutation_p.M1I|SGK2_uc002xks.2_Missense_Mutation_p.M1I|SGK2_uc002xku.2_Missense_Mutation_p.M1I|SGK2_uc002xkq.1_Missense_Mutation_p.M1I	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	61					intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			GCTACAGAATGAACTCTAGCC	0.597													23	82					0	0	1	0	0
MYBL2	4605	broad.mit.edu	37	20	42331169	42331169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42331169C>T	uc002xlb.1	+	8	1206	c.991C>T	c.(991-993)CCT>TCT	p.P331S	MYBL2_uc010zwj.1_Missense_Mutation_p.P307S|MYBL2_uc002xla.1_Missense_Mutation_p.P331S	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	331						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			ATTTGACCTCCCTGAGGAACC	0.522													20	215					0	0	1	0	0
MYBL2	4605	broad.mit.edu	37	20	42341730	42341730	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42341730C>T	uc002xlb.1	+	12	2023	c.1808C>T	c.(1807-1809)CCC>CTC	p.P603L	MYBL2_uc010zwj.1_Missense_Mutation_p.P579L	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	603						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TCCACACTGCCCAAGTCTCTA	0.527													11	16					0	0	1	0	0
MYBL2	4605	broad.mit.edu	37	20	42344686	42344686	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42344686C>T	uc002xlb.1	+	14	2277	c.2062C>T	c.(2062-2064)CTG>TTG	p.L688L	MYBL2_uc010zwj.1_Silent_p.L664L	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	688						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CCTGGGCCGCCTGAAGCCCAG	0.627													13	273					0	0	1	0	0
MYBL2	4605	broad.mit.edu	37	20	42344708	42344708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42344708G>A	uc002xlb.1	+	14	2299	c.2084G>A	c.(2083-2085)CGG>CAG	p.R695Q	MYBL2_uc010zwj.1_Missense_Mutation_p.R671Q	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	695						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CACACATCTCGGACCCTCATC	0.607													54	210					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42635205	42635205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42635205G>A	uc002xlf.3	+	3	228	c.211G>A	c.(211-213)GAG>AAG	p.E71K	TOX2_uc010ggo.2_Missense_Mutation_p.E62K|TOX2_uc002xle.3_Missense_Mutation_p.E20K|TOX2_uc010ggp.2_Missense_Mutation_p.E20K|TOX2_uc002xlg.2_Missense_Mutation_p.E20K	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	71					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CGGCCAGAGCGAGAACAACGA	0.498													39	102					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42680109	42680109	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42680109C>T	uc002xlf.3	+	4	619	c.602C>T	c.(601-603)TCA>TTA	p.S201L	TOX2_uc010ggo.2_Missense_Mutation_p.S192L|TOX2_uc002xle.3_Missense_Mutation_p.S150L|TOX2_uc010ggp.2_Missense_Mutation_p.S150L|TOX2_uc002xlg.2_Missense_Mutation_p.S150L|TOX2_uc010zwk.1_Missense_Mutation_p.S70L	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	201					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			AGCTCCCCATCACCGCCGGGG	0.637													7	24					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42683086	42683086	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42683086C>T	uc002xlf.3	+	5	843	c.826C>T	c.(826-828)CAG>TAG	p.Q276*	TOX2_uc010ggo.2_Nonsense_Mutation_p.Q267*|TOX2_uc002xle.3_Nonsense_Mutation_p.Q225*|TOX2_uc010ggp.2_Nonsense_Mutation_p.Q225*|TOX2_uc002xlg.2_Nonsense_Mutation_p.Q225*|TOX2_uc010zwk.1_Nonsense_Mutation_p.Q145*	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	276	HMG box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding	p.V276I(1)		ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CATCAAGGGTCAGAACCCCAG	0.562													8	57					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42683154	42683154	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42683154G>A	uc002xlf.3	+	5	911	c.894G>A	c.(892-894)GAG>GAA	p.E298E	TOX2_uc010ggo.2_Silent_p.E289E|TOX2_uc002xle.3_Silent_p.E247E|TOX2_uc010ggp.2_Silent_p.E247E|TOX2_uc002xlg.2_Silent_p.E247E|TOX2_uc010zwk.1_Silent_p.E167E	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	298	HMG box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GCCTGGGAGAGGAACAGAAGC	0.572													12	31					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42695407	42695407	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42695407G>A	uc002xlf.3	+	7	1357	c.1340G>A	c.(1339-1341)GGA>GAA	p.G447E	TOX2_uc010ggo.2_Missense_Mutation_p.G465E|TOX2_uc002xle.3_Missense_Mutation_p.G423E|TOX2_uc010ggp.2_Missense_Mutation_p.G423E|TOX2_uc002xlg.2_Missense_Mutation_p.G264E|TOX2_uc010zwk.1_Missense_Mutation_p.G343E	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	447	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			AGCAGCTCGGGATCCTGCTCA	0.632													43	107					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42695454	42695454	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42695454G>A	uc002xlf.3	+	7	1404	c.1387G>A	c.(1387-1389)GAC>AAC	p.D463N	TOX2_uc010ggo.2_Missense_Mutation_p.D481N|TOX2_uc002xle.3_Missense_Mutation_p.D439N|TOX2_uc010ggp.2_Missense_Mutation_p.D439N|TOX2_uc002xlg.2_Missense_Mutation_p.D280N|TOX2_uc010zwk.1_Missense_Mutation_p.D359N	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	463					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CGGGGACTGGGACAGCAGCTA	0.637													43	121					0	0	1	0	0
JPH2	57158	broad.mit.edu	37	20	42747230	42747230	+	Silent	SNP	C	T	T	rs138017620		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42747230C>T	uc002xli.1	-	3	2076	c.1203G>A	c.(1201-1203)GCG>GCA	p.A401A		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	401	Ala-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CGGCCTGTTCCGCTGCCTCAG	0.617													33	149					0	0	1	0	0
JPH2	57158	broad.mit.edu	37	20	42747236	42747236	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42747236C>T	uc002xli.1	-	3	2070	c.1197G>A	c.(1195-1197)GAG>GAA	p.E399E		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	399	Ala-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GTTCCGCTGCCTCAGCTTTGG	0.607													56	126					0	0	1	0	0
JPH2	57158	broad.mit.edu	37	20	42788463	42788463	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42788463G>A	uc002xli.1	-	2	1837	c.964C>T	c.(964-966)CTG>TTG	p.L322L		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	322	MORN 8.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CCGTGGCGCAGGTTGTCCAGC	0.662													17	36					0	0	1	0	0
JPH2	57158	broad.mit.edu	37	20	42788484	42788484	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42788484C>T	uc002xli.1	-	2	1816	c.943G>A	c.(943-945)GAG>AAG	p.E315K		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	315	MORN 8.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CACTCGCCCTCGTAGCGGAGG	0.657													20	33					0	0	1	0	0
JPH2	57158	broad.mit.edu	37	20	42788508	42788508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42788508C>T	uc002xli.1	-	2	1792	c.919G>A	c.(919-921)GAA>AAA	p.E307K		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	307	MORN 7.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CTGGAGCGTTCGCTCACGCCG	0.677													7	49					0	0	1	0	0
C20orf111	51526	broad.mit.edu	37	20	42825913	42825913	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42825913G>A	uc002xlk.2	-	4	795	c.658C>T	c.(658-660)CTG>TTG	p.L220L		NM_016470	NP_057554	Q9NX31	CT111_HUMAN	oxidative stress responsive 1	220											0		Myeloproliferative disorder(115;0.028)	COAD - Colon adenocarcinoma(18;0.00189)			ACACTCTGCAGGCCTGAAAAG	0.522													11	80					0	0	1	0	0
R3HDML	140902	broad.mit.edu	37	20	42969866	42969866	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:42969866G>A	uc002xls.1	+	2	464	c.292G>A	c.(292-294)GAA>AAA	p.E98K		NM_178491	NP_848586	Q9H3Y0	CRSPL_HUMAN	R3H domain containing-like precursor	98						extracellular region	peptidase inhibitor activity				0		Myeloproliferative disorder(115;0.028)	COAD - Colon adenocarcinoma(18;0.00189)			CAGGGCTGCCGAAGCCTGGGC	0.587													21	49					0	0	1	0	0
HNF4A	3172	broad.mit.edu	37	20	43048468	43048468	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43048468G>A	uc002xma.2	+	7	933	c.844G>A	c.(844-846)GAT>AAT	p.D282N	HNF4A_uc002xlt.2_Missense_Mutation_p.D260N|HNF4A_uc002xlu.2_Missense_Mutation_p.D260N|HNF4A_uc002xlv.2_Missense_Mutation_p.D260N|HNF4A_uc002xly.2_Missense_Mutation_p.D282N|HNF4A_uc002xlz.2_Missense_Mutation_p.D282N|HNF4A_uc010ggq.2_Missense_Mutation_p.D275N	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	282					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GCTGCAGATCGATGACAATGA	0.567													28	84					0	0	1	0	0
HNF4A	3172	broad.mit.edu	37	20	43052675	43052675	+	Missense_Mutation	SNP	G	A	A	rs145902391		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43052675G>A	uc002xma.2	+	8	999	c.910G>A	c.(910-912)GAT>AAT	p.D304N	HNF4A_uc002xlt.2_Missense_Mutation_p.D282N|HNF4A_uc002xlu.2_Missense_Mutation_p.D282N|HNF4A_uc002xlv.2_Missense_Mutation_p.D282N|HNF4A_uc002xly.2_Missense_Mutation_p.D304N|HNF4A_uc002xlz.2_Missense_Mutation_p.D304N|HNF4A_uc010ggq.2_Missense_Mutation_p.D297N	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	304					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GGGGCTGAGCGATCCAGGGAA	0.607													9	22					0	0	1	0	0
HNF4A	3172	broad.mit.edu	37	20	43056984	43056984	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43056984G>A	uc002xma.2	+	9	1228	c.1139G>A	c.(1138-1140)AGC>AAC	p.S380N	HNF4A_uc002xlu.2_Missense_Mutation_p.S358N|HNF4A_uc002xlv.2_Missense_Mutation_p.S358N|HNF4A_uc002xlz.2_Missense_Mutation_p.S380N|HNF4A_uc010ggq.2_Missense_Mutation_p.S373N	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	380					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GGGTCCCCCAGCGATGCACCC	0.597													23	74					0	0	1	0	0
SERINC3	10955	broad.mit.edu	37	20	43142617	43142617	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43142617G>A	uc002xme.2	-	2	238	c.104C>T	c.(103-105)TCC>TTC	p.S35F	SERINC3_uc002xmf.1_Missense_Mutation_p.S35F|SERINC3_uc010ggs.1_Missense_Mutation_p.S28F|SERINC3_uc010zwp.1_5'UTR	NM_198941	NP_945179	Q13530	SERC3_HUMAN	tumor differentially expressed protein 1	35	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			skin(3)	3		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.000291)|COAD - Colon adenocarcinoma(18;0.00189)			AGTCACCGTGGAATTCTTACT	0.478													34	91					0	0	1	0	0
ADA	100	broad.mit.edu	37	20	43257798	43257798	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43257798G>A	uc002xmj.2	-	3	236	c.108C>T	c.(106-108)ATC>ATT	p.I36I	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	36					adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	CTGGGAGGGCGATCCCTCTCC	0.597									Adenosine_Deaminase_Deficiency				21	42					0	0	1	0	0
WISP2	8839	broad.mit.edu	37	20	43355771	43355771	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43355771C>T	uc002xmn.2	+	5	929	c.576C>T	c.(574-576)GTC>GTT	p.V192V	uc002xml.1_Intron|uc002xmm.1_Intron|WISP2_uc002xmp.2_Silent_p.V192V|WISP2_uc002xmq.2_Missense_Mutation_p.S110F	NM_003881	NP_003872	O76076	WISP2_HUMAN	WNT1 inducible signaling pathway protein 2	192					cell adhesion|cell-cell signaling|signal transduction	extracellular region|soluble fraction	insulin-like growth factor binding			skin(1)	1		Myeloproliferative disorder(115;0.0122)				CCCCTGGTGTCCCCTGCCCAG	0.502													57	107					0	0	1	0	0
WISP2	8839	broad.mit.edu	37	20	43355922	43355922	+	Missense_Mutation	SNP	C	T	T	rs144332553	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43355922C>T	uc002xmn.2	+	5	1080	c.727C>T	c.(727-729)CGC>TGC	p.R243C	uc002xml.1_Intron|uc002xmm.1_Intron|WISP2_uc002xmp.2_Missense_Mutation_p.R243C|WISP2_uc002xmq.2_Silent_p.V160V	NM_003881	NP_003872	O76076	WISP2_HUMAN	WNT1 inducible signaling pathway protein 2	243					cell adhesion|cell-cell signaling|signal transduction	extracellular region|soluble fraction	insulin-like growth factor binding			skin(1)	1		Myeloproliferative disorder(115;0.0122)				CTCCAGGGGTCGCAGTCCACA	0.682													9	32					0	0	1	0	0
KCNK15	60598	broad.mit.edu	37	20	43378995	43378995	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43378995C>T	uc002xmr.2	+	2	573	c.509C>T	c.(508-510)ACC>ATC	p.T170I		NM_022358	NP_071753	Q9H427	KCNKF_HUMAN	potassium family, subfamily K, member 15	170	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity				0		Myeloproliferative disorder(115;0.0122)				TGTGCCGCCACCCTGGCCCTC	0.687													12	18					0	0	1	0	0
KCNK15	60598	broad.mit.edu	37	20	43379197	43379197	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43379197C>T	uc002xmr.2	+	2	775	c.711C>T	c.(709-711)GCC>GCT	p.A237A		NM_022358	NP_071753	Q9H427	KCNKF_HUMAN	potassium family, subfamily K, member 15	237	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity				0		Myeloproliferative disorder(115;0.0122)				TCATTGGCGCCTTCCTCAACC	0.587													15	83					0	0	1	0	0
RIMS4	140730	broad.mit.edu	37	20	43384806	43384806	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43384806C>T	uc002xms.2	-	6	779	c.779G>A	c.(778-780)AGC>AAC	p.S260N	RIMS4_uc010ggu.2_Missense_Mutation_p.S261N	NM_182970	NP_892015	Q9H426	RIMS4_HUMAN	regulating synaptic membrane exocytosis 4	260					exocytosis|neurotransmitter transport	cell junction|synapse				ovary(4)|central_nervous_system(1)	5		Myeloproliferative disorder(115;0.0122)				CCCCACGGTGCTCTCGAGGGA	0.677													52	105					0	0	1	0	0
RIMS4	140730	broad.mit.edu	37	20	43385610	43385610	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43385610G>A	uc002xms.2	-	5	520	c.520C>T	c.(520-522)CGC>TGC	p.R174C	RIMS4_uc010ggu.2_Missense_Mutation_p.R175C	NM_182970	NP_892015	Q9H426	RIMS4_HUMAN	regulating synaptic membrane exocytosis 4	174	C2.				exocytosis|neurotransmitter transport	cell junction|synapse				ovary(4)|central_nervous_system(1)	5		Myeloproliferative disorder(115;0.0122)				AGCGACTTGCGAGCGACTTTG	0.567													122	282					0	0	1	0	0
YWHAB	7529	broad.mit.edu	37	20	43530342	43530342	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43530342C>T	uc002xmt.2	+	3	450	c.168C>T	c.(166-168)GCC>GCT	p.A56A	YWHAB_uc002xmu.2_Silent_p.A56A	NM_003404	NP_003395	P31946	1433B_HUMAN	tyrosine 3-monooxygenase/tryptophan	56					activation of MAPKK activity|activation of pro-apoptotic gene products|axon guidance|cytoplasmic sequestering of protein|epidermal growth factor receptor signaling pathway|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|mRNA metabolic process|negative regulation of protein dephosphorylation|nerve growth factor receptor signaling pathway|Ras protein signal transduction	centrosome|cytosol|melanosome|perinuclear region of cytoplasm	histone deacetylase binding|phosphoserine binding|protein domain specific binding			kidney(2)|ovary(1)|breast(1)	4		Myeloproliferative disorder(115;0.0122)				TGGTAGGCGCCCGCCGCTCTT	0.517													30	53					0	0	1	0	0
PABPC1L	80336	broad.mit.edu	37	20	43541387	43541387	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43541387C>T	uc010ggv.1	+	2	362	c.280C>T	c.(280-282)CGC>TGC	p.R94C	PABPC1L_uc010zwq.1_RNA	NM_001124756	NP_001118228	Q4VXU2	PAP1L_HUMAN	poly(A)-binding protein, cytoplasmic 1-like	94							nucleotide binding|RNA binding			ovary(1)	1						CCCAGGACTTCGCAAGTCAGG	0.512													16	77					0	0	1	0	0
PABPC1L	80336	broad.mit.edu	37	20	43559289	43559289	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43559289C>T	uc010ggv.1	+	8	1243	c.1161C>T	c.(1159-1161)TCC>TCT	p.S387S	PABPC1L_uc010zwq.1_RNA|PABPC1L_uc002xmv.2_RNA|PABPC1L_uc002xmw.2_5'Flank|PABPC1L_uc002xmx.2_5'Flank	NM_001124756	NP_001118228	Q4VXU2	PAP1L_HUMAN	poly(A)-binding protein, cytoplasmic 1-like	387							nucleotide binding|RNA binding			ovary(1)	1						AGCGCCTCTCCACCATGCGGA	0.652													42	231					0	0	1	0	0
STK4	6789	broad.mit.edu	37	20	43610472	43610472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43610472C>T	uc002xnb.2	+	4	338	c.248C>T	c.(247-249)CCT>CTT	p.P83L	STK4_uc010ggx.2_Missense_Mutation_p.P83L|STK4_uc010ggy.2_Missense_Mutation_p.P83L|STK4_uc010ggw.1_Missense_Mutation_p.P83L	NM_006282	NP_006273	Q13043	STK4_HUMAN	serine/threonine kinase 4	83	Protein kinase.				apoptosis|cell morphogenesis|hippo signaling cascade|intracellular protein kinase cascade|negative regulation of canonical Wnt receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of apoptosis|protein autophosphorylation	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein homodimerization activity|protein serine/threonine kinase activator activity|protein serine/threonine kinase activity|transcription factor binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				CTCTCTAGCCCTCATGTAGTC	0.343													16	53					0	0	1	0	0
STK4	6789	broad.mit.edu	37	20	43610524	43610524	+	Silent	SNP	C	T	T	rs138052948		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43610524C>T	uc002xnb.2	+	4	390	c.300C>T	c.(298-300)ATC>ATT	p.I100I	STK4_uc010ggx.2_Silent_p.I100I|STK4_uc010ggy.2_Silent_p.I100I|STK4_uc010ggw.1_Silent_p.I100I	NM_006282	NP_006273	Q13043	STK4_HUMAN	serine/threonine kinase 4	100	Protein kinase.				apoptosis|cell morphogenesis|hippo signaling cascade|intracellular protein kinase cascade|negative regulation of canonical Wnt receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of apoptosis|protein autophosphorylation	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein homodimerization activity|protein serine/threonine kinase activator activity|protein serine/threonine kinase activity|transcription factor binding	p.I100I(1)		ovary(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				ACTTATGGATCGTTATGGAGT	0.363													32	54					0	0	1	0	0
STK4	6789	broad.mit.edu	37	20	43623872	43623872	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43623872C>T	uc002xnb.2	+	6	757	c.667C>T	c.(667-669)CCT>TCT	p.P223S	STK4_uc010ggx.2_Missense_Mutation_p.P223S|STK4_uc010ggy.2_Missense_Mutation_p.P168S|STK4_uc010ggw.1_Missense_Mutation_p.P223S	NM_006282	NP_006273	Q13043	STK4_HUMAN	serine/threonine kinase 4	223	Protein kinase.				apoptosis|cell morphogenesis|hippo signaling cascade|intracellular protein kinase cascade|negative regulation of canonical Wnt receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of apoptosis|protein autophosphorylation	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein homodimerization activity|protein serine/threonine kinase activator activity|protein serine/threonine kinase activity|transcription factor binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				AGGAAAGCCCCCTTATGCTGA	0.423													22	68					0	0	1	0	0
KCNS1	3787	broad.mit.edu	37	20	43723679	43723679	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43723679C>T	uc002xnc.2	-	5	1810	c.1413G>A	c.(1411-1413)GAG>GAA	p.E471E	KCNS1_uc002xnd.2_Silent_p.E471E	NM_002251	NP_002242	Q96KK3	KCNS1_HUMAN	potassium voltage-gated channel	471	Cytoplasmic (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity|protein binding				0		Myeloproliferative disorder(115;0.0122)				GCACGGCTGCCTCCAGAGCCT	0.577													64	124					0	0	1	0	0
PI3	5266	broad.mit.edu	37	20	43803611	43803611	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43803611G>A	uc002xng.2	+	1	72	c.48G>A	c.(46-48)GGG>GGA	p.G16G		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	16					copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TCATCGCTGGGACGCTGGTTC	0.577													20	57					0	0	1	0	0
SEMG1	6406	broad.mit.edu	37	20	43836363	43836363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43836363C>T	uc002xni.2	+	2	482	c.425C>T	c.(424-426)CCT>CTT	p.P142L	SEMG1_uc002xnj.2_Missense_Mutation_p.P142L|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.P142L	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	142					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				ACACAAAATCCTTCTCAAGAT	0.403													37	103					0	0	1	0	0
SLPI	6590	broad.mit.edu	37	20	43881651	43881651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43881651G>A	uc002xnm.1	-	3	408	c.386C>T	c.(385-387)CCT>CTT	p.P129L		NM_003064	NP_003055	P03973	SLPI_HUMAN	secretory leukocyte peptidase inhibitor	129	Elastase inhibitory domain.|WAP 2.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				ACCTTTCACAGGGGAAACGCA	0.567													29	88					0	0	1	0	0
MATN4	8785	broad.mit.edu	37	20	43926898	43926898	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43926898G>A	uc002xnn.2	-	7	1525	c.1338C>T	c.(1336-1338)GCC>GCT	p.A446A	MATN4_uc002xno.2_Silent_p.A405A|MATN4_uc002xnp.2_Silent_p.A364A|MATN4_uc010zwr.1_Silent_p.A394A|MATN4_uc002xnr.1_Silent_p.A446A	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	487	VWFA 2.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				GCACGTTAAGGGCACGGGGCC	0.662													38	68					0	0	1	0	0
MATN4	8785	broad.mit.edu	37	20	43933018	43933018	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43933018C>T	uc002xnn.2	-	3	680	c.493G>A	c.(493-495)GGC>AGC	p.G165S	MATN4_uc002xno.2_Missense_Mutation_p.G165S|MATN4_uc002xnp.2_Missense_Mutation_p.G165S|MATN4_uc010zwr.1_Missense_Mutation_p.G113S|MATN4_uc002xnr.1_Missense_Mutation_p.G165S|RBPJL_uc002xns.2_5'Flank|RBPJL_uc002xnt.2_5'Flank	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	165	VWFA 1.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				ATTTCAATGCCGCGGGCGCGC	0.721													5	22					0	0	1	0	0
MATN4	8785	broad.mit.edu	37	20	43933065	43933065	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43933065C>T	uc002xnn.2	-	3	633	c.446G>A	c.(445-447)CGG>CAG	p.R149Q	MATN4_uc002xno.2_Missense_Mutation_p.R149Q|MATN4_uc002xnp.2_Missense_Mutation_p.R149Q|MATN4_uc010zwr.1_Missense_Mutation_p.R97Q|MATN4_uc002xnr.1_Missense_Mutation_p.R149Q|RBPJL_uc002xns.2_5'Flank|RBPJL_uc002xnt.2_5'Flank	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	149	VWFA 1.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				GTCCTGGGGCCGCCCGTCTGT	0.721													3	12					0	0	1	0	0
SDC4	6385	broad.mit.edu	37	20	43956011	43956011	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43956011G>A	uc002xnu.2	-	5	530	c.490C>T	c.(490-492)CTG>TTG	p.L164L	SDC4_uc010zws.1_Silent_p.L92L	NM_002999	NP_002990	P31431	SDC4_HUMAN	syndecan 4 precursor	164	Helical; (Potential).					extracellular region|integral to plasma membrane	cytoskeletal protein binding|thrombospondin receptor activity				0		Myeloproliferative disorder(115;0.0122)				AGTAGGATCAGGAAGACGGCA	0.532													14	58					0	0	1	0	0
SDC4	6385	broad.mit.edu	37	20	43959189	43959189	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43959189G>A	uc002xnu.2	-	4	302	c.262C>T	c.(262-264)CAT>TAT	p.H88Y	SDC4_uc010zws.1_Missense_Mutation_p.H16Y	NM_002999	NP_002990	P31431	SDC4_HUMAN	syndecan 4 precursor	88	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytoskeletal protein binding|thrombospondin receptor activity				0		Myeloproliferative disorder(115;0.0122)				TCAGGGATATGGTTATCTAGA	0.542													15	30					0	0	1	0	0
SYS1	90196	broad.mit.edu	37	20	43995655	43995655	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:43995655C>T	uc002xnv.2	+	4	629	c.371C>T	c.(370-372)GCC>GTC	p.A124V	SYS1_uc010gha.2_RNA|SYS1_uc002xnw.1_Intron|SYS1-DBNDD2_uc002xnx.2_Intron	NM_033542	NP_291020	Q8N2H4	SYS1_HUMAN	SYS1 Golgi-localized integral membrane protein	124	Helical; (Potential).				protein transport	Golgi membrane|integral to membrane				skin(1)	1		Myeloproliferative disorder(115;0.0122)				CTGGTCCAAGCCGTGTGCATT	0.562													20	103					0	0	1	0	0
TP53TG5	27296	broad.mit.edu	37	20	44004191	44004191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44004191C>T	uc002xny.2	-	4	337	c.256G>A	c.(256-258)GAA>AAA	p.E86K	SYS1_uc002xnw.1_3'UTR|SYS1-DBNDD2_uc002xnx.2_Intron	NM_014477	NP_055292	Q9Y2B4	T53G5_HUMAN	TP53-target gene 5 protein	86					intracellular signal transduction|negative regulation of cell growth	cytoplasm|nucleus				central_nervous_system(1)	1						GCACTGTTTTCCCTGGCAGGG	0.512													52	144					0	0	1	0	0
PIGT	51604	broad.mit.edu	37	20	44050117	44050117	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44050117C>T	uc002xoh.1	+	9	1201	c.1128C>T	c.(1126-1128)CAC>CAT	p.H376H	PIGT_uc010ghd.1_Silent_p.H283H|PIGT_uc010ghc.1_RNA|PIGT_uc010ghe.1_Silent_p.H339H|PIGT_uc010ghf.1_Silent_p.H329H|PIGT_uc002xoj.1_Intron|PIGT_uc002xok.1_Silent_p.H341H|PIGT_uc010zwu.1_Silent_p.H114H|PIGT_uc002xoi.1_RNA|PIGT_uc010zwv.1_Silent_p.H114H|PIGT_uc010zww.1_Silent_p.H320H|PIGT_uc010zwx.1_Silent_p.H211H|PIGT_uc010zwy.1_Silent_p.H274H|PIGT_uc010zwz.1_Silent_p.H114H|PIGT_uc010zxa.1_Silent_p.H214H|PIGT_uc002xol.1_Intron|PIGT_uc010zxb.1_Silent_p.H52H|PIGT_uc002xom.1_5'Flank	NM_015937	NP_057021	Q969N2	PIGT_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	376	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				ACAACACCCACCCATACCGGG	0.622													13	79					0	0	1	0	0
WFDC2	10406	broad.mit.edu	37	20	44108722	44108722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44108722C>T	uc002xoo.2	+	3	392	c.364C>T	c.(364-366)CCC>TCC	p.P122S	WFDC2_uc002xoq.2_RNA|WFDC2_uc002xop.2_Missense_Mutation_p.P74S|WFDC2_uc002xor.2_Missense_Mutation_p.P71S	NM_006103	NP_006094	Q14508	WFDC2_HUMAN	WAP four-disulfide core domain 2 precursor	122	WAP 2.				proteolysis|spermatogenesis	extracellular space	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CTGTGTCACTCCCAATTTCTG	0.572													31	110					0	0	1	0	0
SPINLW1	57119	broad.mit.edu	37	20	44174367	44174367	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44174367C>T	uc002xou.2	-	2	166	c.134G>A	c.(133-135)AGG>AAG	p.R45K	SPINLW1_uc010zxc.1_Missense_Mutation_p.R45K|SPINLW1_uc002xot.2_Missense_Mutation_p.R29K|SPINLW1_uc002xov.1_Missense_Mutation_p.R45K	NM_020398	NP_065131	O95925	EPPI_HUMAN	serine peptidase inhibitor-like, with Kunitz and	45	WAP.					extracellular region	serine-type endopeptidase inhibitor activity			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				ACACACATCCCTTTCTTGGAA	0.433													71	133					0	0	1	0	0
WFDC8	90199	broad.mit.edu	37	20	44184463	44184463	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44184463C>T	uc002xow.2	-	4	401	c.322G>A	c.(322-324)GCA>ACA	p.A108T	WFDC8_uc002xox.2_Missense_Mutation_p.A108T	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	108	BPTI/Kunitz inhibitor.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CAGCGCTGTGCCTCATGATTA	0.463													26	76					0	0	1	0	0
WFDC11	259239	broad.mit.edu	37	20	44278037	44278037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44278037C>T	uc002xpa.2	-	4	297	c.102G>A	c.(100-102)AGG>AGA	p.R34R		NM_147197	NP_671730	Q8NEX6	WFD11_HUMAN	WAP four-disulfide core domain 11 precursor	34						extracellular region					0		Myeloproliferative disorder(115;0.0122)				ACAATTCCTTCCCTGAAATTG	0.388													41	139					0	0	1	0	0
SPINT4	391253	broad.mit.edu	37	20	44352646	44352646	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44352646C>T	uc002xpe.1	+	2	262	c.243C>T	c.(241-243)TTC>TTT	p.F81F		NM_178455	NP_848550	Q6UDR6	SPIT4_HUMAN	serine peptidase inhibitor, Kunitz type 4	81	BPTI/Kunitz inhibitor.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2		Myeloproliferative disorder(115;0.028)				TTAACAACTTCAAGCTTAAAA	0.403													24	118					0	0	1	0	0
WFDC3	140686	broad.mit.edu	37	20	44405749	44405749	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44405749C>T	uc002xpf.1	-	5	542	c.458G>A	c.(457-459)GGC>GAC	p.G153D	WFDC3_uc002xpj.1_RNA|WFDC3_uc002xph.1_Intron|WFDC3_uc010ghh.1_Intron	NM_080614	NP_542181	Q8IUB2	WFDC3_HUMAN	WAP four-disulfide core domain 3 precursor	153	WAP 3.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GCGGCCACAGCCGGTGCTGCA	0.557													19	33					0	0	1	0	0
WFDC3	140686	broad.mit.edu	37	20	44416581	44416581	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44416581G>A	uc002xpf.1	-	4	336	c.252C>T	c.(250-252)TCC>TCT	p.S84S	WFDC3_uc002xpj.1_RNA|WFDC3_uc002xph.1_RNA|WFDC3_uc010ghh.1_RNA	NM_080614	NP_542181	Q8IUB2	WFDC3_HUMAN	WAP four-disulfide core domain 3 precursor	84	WAP 2.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TTTTCAAACAGGATTGTTTCC	0.388													26	64					0	0	1	0	0
DNTTIP1	116092	broad.mit.edu	37	20	44420687	44420688	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44420687_44420688GG>AA	uc002xpk.2	+	1	112_113	c.44_45GG>AA	c.(43-45)GGG>GAA	p.G15E	WFDC3_uc002xpf.1_5'Flank|WFDC3_uc002xpj.1_5'Flank|WFDC3_uc002xph.1_5'Flank|WFDC3_uc010ghh.1_5'Flank	NM_052951	NP_443183	Q9H147	TDIF1_HUMAN	terminal deoxynucleotidyltransferase interacting	15						nucleus				ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.0122)				GGACCTAGCGGGGCCGAGAGGG	0.752													4	11					0	0	1	0	0
PCIF1	63935	broad.mit.edu	37	20	44569769	44569769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44569769C>T	uc002xqs.2	+	7	910	c.596C>T	c.(595-597)CCC>CTC	p.P199L		NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	199						nucleus				skin(1)	1						CCCCCGCATCCCGAAGTGGAA	0.622													18	45					0	0	1	0	0
ZNF335	63925	broad.mit.edu	37	20	44587924	44587924	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44587924G>A	uc002xqw.2	-	15	2292	c.2169C>T	c.(2167-2169)TTC>TTT	p.F723F	ZNF335_uc010zxk.1_Silent_p.F568F	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	723					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				GCAGAGAGAAGAAGGGGCGAC	0.657													5	79					0	0	1	0	0
ZNF335	63925	broad.mit.edu	37	20	44589351	44589351	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44589351G>A	uc002xqw.2	-	12	1809	c.1686C>T	c.(1684-1686)TTC>TTT	p.F562F	ZNF335_uc010zxk.1_Silent_p.F407F	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	562	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				CAGGGCAGGGGAAAGAGCTCA	0.557													30	92					0	0	1	0	0
ZNF335	63925	broad.mit.edu	37	20	44598104	44598104	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44598104G>A	uc002xqw.2	-	3	551	c.428C>T	c.(427-429)CCC>CTC	p.P143L	ZNF335_uc010zxk.1_Intron|ZNF335_uc002xqx.1_Missense_Mutation_p.P111L|ZNF335_uc002xqy.2_5'Flank	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	143					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				GATGAGGTCGGGCCCGATGGT	0.567													4	31					0	0	1	0	0
MMP9	4318	broad.mit.edu	37	20	44639169	44639169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44639169C>T	uc002xqz.2	+	3	438	c.419C>T	c.(418-420)GCC>GTC	p.A140V		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	140					collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	ATTGACGACGCCTTTGCCCGC	0.617													17	40					0	0	1	0	0
MMP9	4318	broad.mit.edu	37	20	44639787	44639787	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44639787C>T	uc002xqz.2	+	5	674	c.655C>T	c.(655-657)CCA>TCA	p.P219S		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	219					collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	TGCAGTGGTTCCAACTCGGTT	0.632													115	281					0	0	1	0	0
MMP9	4318	broad.mit.edu	37	20	44640909	44640909	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44640909G>A	uc002xqz.2	+	7	1150	c.1131G>A	c.(1129-1131)TCG>TCA	p.S377S		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	377	Fibronectin type-II 3.				collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	CTACCACCTCGAACTTTGACA	0.657													39	94					0	0	1	0	0
MMP9	4318	broad.mit.edu	37	20	44640922	44640922	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44640922G>A	uc002xqz.2	+	7	1163	c.1144G>A	c.(1144-1146)GAC>AAC	p.D382N		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	382	Fibronectin type-II 3.				collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	CTTTGACAGCGACAAGAAGTG	0.667													36	83					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44664043	44664043	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44664043G>A	uc010zxl.1	+	3	293	c.217G>A	c.(217-219)GAG>AAG	p.E73K	SLC12A5_uc002xra.2_Missense_Mutation_p.E50K|SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.E50K	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	73	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CCCTCCATAGGAGGAGATGGA	0.592													29	262					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44664162	44664162	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44664162G>A	uc010zxl.1	+	3	412	c.336G>A	c.(334-336)AAG>AAA	p.K112K	SLC12A5_uc002xra.2_Silent_p.K89K|SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Silent_p.K89K	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	112	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GTGGAAAAAAGAAGCCGGTGC	0.353													18	42					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44669131	44669131	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44669131G>A	uc010zxl.1	+	7	877	c.801G>A	c.(799-801)GTG>GTA	p.V267V	SLC12A5_uc002xra.2_Silent_p.V244V|SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Silent_p.V244V	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	267	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TGGCCACTGTGGTGTTTGTGG	0.537													23	44					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44671797	44671797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44671797C>T	uc010zxl.1	+	9	1217	c.1141C>T	c.(1141-1143)CTC>TTC	p.L381F	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.L358F	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	381	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CACAGAGAACCTCTGGAGCTC	0.607													76	162					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44673604	44673604	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44673604G>A	uc010zxl.1	+	12	1540	c.1464_splice	c.e12-1	p.K488_splice	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Splice_Site_p.K465_splice	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride						potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CATCATTCCAGGTTTGGCGAA	0.562													70	130					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44673674	44673674	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44673674C>T	uc010zxl.1	+	12	1609	c.1533C>T	c.(1531-1533)GTC>GTT	p.V511V	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Silent_p.V488V	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	511	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GGGTAATTGTCATCGGATCCT	0.612													48	176					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44676097	44676097	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44676097C>T	uc010zxl.1	+	15	1937	c.1861C>T	c.(1861-1863)CTC>TTC	p.L621F	SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.L598F	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	621	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GTCTAGGACCCTCTCCTTCCT	0.572													38	108					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44684879	44684879	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44684879G>A	uc010zxl.1	+	22	3023	c.2947G>A	c.(2947-2949)GCT>ACT	p.A983T	SLC12A5_uc002xrb.2_Missense_Mutation_p.A960T	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	983	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	AGAAGAGACGGCTGGTGACAG	0.577													26	54					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44685808	44685809	+	Splice_Site	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44685808_44685809GG>AA	uc010zxl.1	+	25	3271	c.3195_splice	c.e25-1	p.L1065_splice	SLC12A5_uc002xrb.2_Splice_Site_p.L1042_splice	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride						potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TCCTGCCGCAGGAACCAGTCCA	0.629													10	61					0	0	1	0	0
NCOA5	57727	broad.mit.edu	37	20	44691437	44691437	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44691437G>A	uc002xrd.2	-	7	1770	c.1242C>T	c.(1240-1242)CTC>CTT	p.L414L	NCOA5_uc002xrc.2_3'UTR|NCOA5_uc002xre.2_Silent_p.L414L	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	414					regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				TAGCAGAGGGGAGCACTTGGC	0.617													44	110					0	0	1	0	0
CDH22	64405	broad.mit.edu	37	20	44803639	44803639	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44803639C>T	uc002xrm.2	-	11	2394	c.1993G>A	c.(1993-1995)GAC>AAC	p.D665N	CDH22_uc010ghk.1_Missense_Mutation_p.D665N	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	665	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				ATGACGTTGTCCCGCATGTCT	0.627													15	46					0	0	1	0	0
CDH22	64405	broad.mit.edu	37	20	44815231	44815231	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44815231G>A	uc002xrm.2	-	9	2060	c.1659C>T	c.(1657-1659)ATC>ATT	p.I553I	CDH22_uc010ghk.1_Silent_p.I553I	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	553	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				GCTCACCTTGGATGTCAAGCA	0.597													21	63					0	0	1	0	0
CDH22	64405	broad.mit.edu	37	20	44845619	44845619	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44845619C>T	uc002xrm.2	-	4	1085	c.684G>A	c.(682-684)ACG>ACA	p.T228T	CDH22_uc010ghk.1_Silent_p.T228T|CDH22_uc002xrn.1_5'UTR	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	228	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				CAGGCACAGCCGTCCGGATTA	0.652													23	76					0	0	1	0	0
SLC35C2	51006	broad.mit.edu	37	20	44983754	44983754	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44983754G>A	uc002xro.2	-	6	1076	c.535C>T	c.(535-537)CGC>TGC	p.R179C	SLC35C2_uc002xrp.2_Missense_Mutation_p.R158C|SLC35C2_uc002xrq.2_Missense_Mutation_p.R179C|SLC35C2_uc002xrr.2_Missense_Mutation_p.R179C|SLC35C2_uc010zxn.1_Missense_Mutation_p.R44C|SLC35C2_uc010zxo.1_Missense_Mutation_p.R65C|SLC35C2_uc010zxp.1_Missense_Mutation_p.R208C	NM_173179	NP_775271	Q9NQQ7	S35C2_HUMAN	solute carrier family 35, member C2 isoform a	179					transport	integral to membrane				ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGGGTCCAGCGAATGCCACCG	0.622													33	94					0	0	1	0	0
SLC35C2	51006	broad.mit.edu	37	20	44986361	44986361	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:44986361G>A	uc002xro.2	-	3	713	c.172C>T	c.(172-174)CTC>TTC	p.L58F	SLC35C2_uc002xrp.2_Missense_Mutation_p.L58F|SLC35C2_uc002xrq.2_Missense_Mutation_p.L58F|SLC35C2_uc002xrr.2_Missense_Mutation_p.L58F|SLC35C2_uc010zxn.1_Intron|SLC35C2_uc010zxo.1_Intron|SLC35C2_uc010zxp.1_Missense_Mutation_p.L87F	NM_173179	NP_775271	Q9NQQ7	S35C2_HUMAN	solute carrier family 35, member C2 isoform a	58	Helical; (Potential).				transport	integral to membrane				ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GCGGAGAAGAGGAAGATCACG	0.617													18	58					0	0	1	0	0
ZNF334	55713	broad.mit.edu	37	20	45130287	45130287	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45130287C>T	uc002xsc.2	-	5	1875	c.1691G>A	c.(1690-1692)AGA>AAA	p.R564K	ZNF334_uc002xsa.2_Missense_Mutation_p.R587K|ZNF334_uc002xsb.2_Missense_Mutation_p.R526K|ZNF334_uc002xsd.2_Missense_Mutation_p.R526K|ZNF334_uc010ghl.2_Missense_Mutation_p.R563K	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	564	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				TGTGTGTGTTCTCTGATGGTG	0.463													59	156					0	0	1	0	0
ZNF334	55713	broad.mit.edu	37	20	45130736	45130736	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45130736G>A	uc002xsc.2	-	5	1426	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	ZNF334_uc002xsa.2_Silent_p.F437F|ZNF334_uc002xsb.2_Silent_p.F376F|ZNF334_uc002xsd.2_Silent_p.F376F|ZNF334_uc010ghl.2_Silent_p.F413F	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	414	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				ATTGACAAAAGAAGGTTTTCT	0.423													18	168					0	0	1	0	0
SLC13A3	64849	broad.mit.edu	37	20	45224880	45224880	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45224880G>A	uc002xsf.1	-	5	748	c.710C>T	c.(709-711)TCC>TTC	p.S237F	SLC13A3_uc010ghn.1_Missense_Mutation_p.S206F|SLC13A3_uc010zxw.1_Missense_Mutation_p.P215S|SLC13A3_uc002xsg.1_Missense_Mutation_p.S190F|SLC13A3_uc010gho.1_Missense_Mutation_p.S190F|SLC13A3_uc010zxx.1_Missense_Mutation_p.S139F	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	237	Helical; (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	GTAGGGGATGGAGATGAGGAA	0.577													35	93					0	0	1	0	0
SLC13A3	64849	broad.mit.edu	37	20	45242109	45242109	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45242109G>A	uc002xsf.1	-	2	405	c.367C>T	c.(367-369)CAG>TAG	p.Q123*	SLC13A3_uc010ghn.1_Nonsense_Mutation_p.Q92*|SLC13A3_uc010zxw.1_Nonsense_Mutation_p.Q123*|SLC13A3_uc002xsg.1_Nonsense_Mutation_p.Q76*|SLC13A3_uc010gho.1_Nonsense_Mutation_p.Q76*|SLC13A3_uc010zxx.1_Nonsense_Mutation_p.Q25*|SLC13A3_uc002xsi.3_Nonsense_Mutation_p.Q76*	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	123	Extracellular (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	CTGGCCGGCTGGACTCCAACA	0.562													19	49					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45353847	45353847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45353847G>A	uc002xsl.2	+	2	269	c.172G>A	c.(172-174)GCT>ACT	p.A58T		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	58	Helical; Name=2; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GCTCCTGGGGGCTCTCCTCGC	0.607													15	43					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354341	45354341	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45354341C>T	uc002xsl.2	+	2	763	c.666C>T	c.(664-666)TTC>TTT	p.F222F		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	222	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TGGACCTCTTCAGGGCACGCG	0.627													31	86					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354698	45354698	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45354698C>T	uc002xsl.2	+	2	1120	c.1023C>T	c.(1021-1023)CTC>CTT	p.L341L		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	341	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGACAGGCCTCCCTGGAGACT	0.597													20	63					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45355503	45355503	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45355503T>G	uc002xsl.2	+	3	1386	c.1289T>G	c.(1288-1290)GTG>GGG	p.V430G		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	430	Helical; Name=10; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CCCACCCTAGTGACCTGGCTT	0.577													28	131					0	0	1	0	0
EYA2	2139	broad.mit.edu	37	20	45633599	45633599	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45633599C>T	uc002xsm.2	+	4	548	c.174C>T	c.(172-174)CTC>CTT	p.L58L	EYA2_uc010ghp.2_Silent_p.L58L|EYA2_uc002xsn.2_Silent_p.L63L|EYA2_uc002xso.2_Silent_p.L58L|EYA2_uc002xsp.2_Silent_p.L58L|EYA2_uc002xsq.2_Silent_p.L58L	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	58					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				CACGTGTCCTCCCCCGCCAGC	0.572													18	119					0	0	1	0	0
EYA2	2139	broad.mit.edu	37	20	45725748	45725748	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45725748G>A	uc002xsm.2	+	9	1203	c.829G>A	c.(829-831)GAG>AAG	p.E277K	EYA2_uc010ghp.2_Missense_Mutation_p.E277K|EYA2_uc002xsn.2_Missense_Mutation_p.E282K|EYA2_uc002xso.2_Missense_Mutation_p.E277K|EYA2_uc002xsp.2_Missense_Mutation_p.E277K|EYA2_uc002xsq.2_Missense_Mutation_p.E277K	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	277					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				GGACTTGGATGAGACAATAAT	0.403													60	183					0	0	1	0	0
ZMYND8	23613	broad.mit.edu	37	20	45839446	45839446	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:45839446A>C	uc002xta.1	-	22	3775	c.3521T>G	c.(3520-3522)CTC>CGC	p.L1174R	ZMYND8_uc010ghq.1_Missense_Mutation_p.S811A|ZMYND8_uc010ghr.1_Missense_Mutation_p.L1104R|ZMYND8_uc002xst.1_Missense_Mutation_p.L1056R|ZMYND8_uc002xsu.1_Missense_Mutation_p.L1075R|ZMYND8_uc002xsv.1_Missense_Mutation_p.L1102R|ZMYND8_uc002xsw.1_Missense_Mutation_p.L908R|ZMYND8_uc002xsx.1_Missense_Mutation_p.L880R|ZMYND8_uc002xsy.1_Missense_Mutation_p.L1131R|ZMYND8_uc002xsz.1_Missense_Mutation_p.L1093R|ZMYND8_uc010zxy.1_Missense_Mutation_p.L1229R|ZMYND8_uc002xtb.1_Missense_Mutation_p.L1176R|ZMYND8_uc002xss.2_Missense_Mutation_p.L1174R|ZMYND8_uc010zxz.1_Missense_Mutation_p.L1042R|ZMYND8_uc002xtc.1_Missense_Mutation_p.L1148R|ZMYND8_uc002xtd.1_Missense_Mutation_p.L1123R|ZMYND8_uc002xte.1_Missense_Mutation_p.L1156R|ZMYND8_uc010zya.1_Missense_Mutation_p.L1202R|ZMYND8_uc002xtf.1_Missense_Mutation_p.L1222R|ZMYND8_uc002xsr.1_Missense_Mutation_p.L273R	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	1174	Interacts with PRKCB1.						protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			TTTCGGGAGGAGGCTCTTCGT	0.537													21	108					0	0	1	0	0
NCOA3	8202	broad.mit.edu	37	20	46267784	46267784	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:46267784C>T	uc002xtk.2	+	14	2750	c.2545C>T	c.(2545-2547)CGT>TGT	p.R849C	NCOA3_uc010ght.1_Missense_Mutation_p.R859C|NCOA3_uc002xtl.2_Missense_Mutation_p.R849C|NCOA3_uc002xtm.2_Missense_Mutation_p.R849C|NCOA3_uc002xtn.2_Missense_Mutation_p.R849C|NCOA3_uc010zyc.1_Missense_Mutation_p.R644C	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	849					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						GCAGTCTATTCGTCCTCCATA	0.373													53	103					0	0	1	0	0
NCOA3	8202	broad.mit.edu	37	20	46267841	46267842	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:46267841_46267842CC>TT	uc002xtk.2	+	14	2807_2808	c.2602_2603CC>TT	c.(2602-2604)CCT>TTT	p.P868F	NCOA3_uc010ght.1_Missense_Mutation_p.P878F|NCOA3_uc002xtl.2_Missense_Mutation_p.P868F|NCOA3_uc002xtm.2_Missense_Mutation_p.P868F|NCOA3_uc002xtn.2_Missense_Mutation_p.P868F|NCOA3_uc010zyc.1_Missense_Mutation_p.P663F	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	868					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						TGGCTCAAGTCCTCCAGTAAAA	0.436													35	84					0	0	1	0	0
SULF2	55959	broad.mit.edu	37	20	46365631	46365631	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:46365631G>A	uc002xto.2	-	3	561	c.231C>T	c.(229-231)CAC>CAT	p.H77H	SULF2_uc002xtr.2_Silent_p.H77H|SULF2_uc002xtq.2_Silent_p.H77H|SULF2_uc010ghv.1_Silent_p.H77H	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	77					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						CGTTGATGAAGTGCGCCCCGC	0.597													7	75					0	0	1	0	0
PREX1	57580	broad.mit.edu	37	20	47274755	47274755	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47274755C>T	uc002xtw.1	-	17	1916	c.1893G>A	c.(1891-1893)CAG>CAA	p.Q631Q	PREX1_uc002xtv.1_5'Flank	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	631	PDZ.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			AGTCCTCCTCCTGGGGCAGGA	0.672											OREG0026010	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	276					0	0	1	0	0
PREX1	57580	broad.mit.edu	37	20	47274758	47274758	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47274758G>A	uc002xtw.1	-	17	1913	c.1890C>T	c.(1888-1890)CCC>CCT	p.P630P	PREX1_uc002xtv.1_5'Flank	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	630	PDZ.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			CCTCCTCCTGGGGCAGGATCT	0.672											OREG0026010	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	268					0	0	1	0	0
PREX1	57580	broad.mit.edu	37	20	47361637	47361637	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47361637G>A	uc002xtw.1	-	3	362	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	113	DH.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			AGGCGGCCAAGAAATCCTTAT	0.502													21	268					0	0	1	0	0
CSE1L	1434	broad.mit.edu	37	20	47700684	47700684	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47700684C>T	uc002xty.2	+	15	1738	c.1604C>T	c.(1603-1605)CCT>CTT	p.P535L	CSE1L_uc010zyg.1_Missense_Mutation_p.P318L|CSE1L_uc010ghx.2_Missense_Mutation_p.P479L|CSE1L_uc010ghy.2_Intron|CSE1L_uc010zyh.1_Missense_Mutation_p.P184L	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	535					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			ATGCGAGGGCCTAACAATGCC	0.403													18	109					0	0	1	0	0
STAU1	6780	broad.mit.edu	37	20	47752396	47752396	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47752396T>C	uc002xud.2	-	6	994	c.583A>G	c.(583-585)AAA>GAA	p.K195E	STAU1_uc002xua.2_Missense_Mutation_p.K114E|STAU1_uc002xub.2_Missense_Mutation_p.K114E|STAU1_uc002xuc.2_Missense_Mutation_p.K114E|STAU1_uc002xue.2_Missense_Mutation_p.K114E|STAU1_uc002xuf.2_Missense_Mutation_p.K114E|STAU1_uc002xug.2_Missense_Mutation_p.K195E	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	195	DRBM 2.					microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			AAGTTCCGTTTAAGTGCAATC	0.328													20	50					0	0	1	0	0
DDX27	55661	broad.mit.edu	37	20	47841689	47841689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47841689G>A	uc002xuh.2	+	6	707	c.646G>A	c.(646-648)GAA>AAA	p.E216K		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	216						nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TCAGTACGATGAAAACCTCTC	0.363													37	120					0	0	1	0	0
DDX27	55661	broad.mit.edu	37	20	47841699	47841699	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47841699C>T	uc002xuh.2	+	6	717	c.656C>T	c.(655-657)TCG>TTG	p.S219L		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	219	Q motif.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GAAAACCTCTCGTTCCAGGAC	0.338													36	118					0	0	1	0	0
ZNFX1	57169	broad.mit.edu	37	20	47887209	47887209	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47887209G>A	uc002xui.2	-	3	1387	c.1140C>T	c.(1138-1140)TTC>TTT	p.F380F		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	380							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			AAGGTCTGACGAAATCTTCTC	0.468													40	83					0	0	1	0	0
ZNFX1	57169	broad.mit.edu	37	20	47887759	47887759	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47887759G>A	uc002xui.2	-	3	837	c.590C>T	c.(589-591)TCC>TTC	p.S197F		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	197							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ATCCATTTTGGAGCTACAAGC	0.448													39	118					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47990425	47990425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47990425C>T	uc002xur.1	-	2	1836	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	KCNB1_uc002xus.1_Missense_Mutation_p.E558K	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	558	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TCAAGTTCTTCCTTTGGTTTG	0.493													45	154					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47990456	47990456	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:47990456G>A	uc002xur.1	-	2	1805	c.1641C>T	c.(1639-1641)ACC>ACT	p.T547T	KCNB1_uc002xus.1_Silent_p.T547T	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	547	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CTGACTCCTTGGTATTGAGGA	0.517													75	195					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	48098736	48098736	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:48098736G>A	uc002xur.1	-	1	446	c.282C>T	c.(280-282)TCC>TCT	p.S94S	KCNB1_uc002xus.1_Silent_p.S94S	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	94	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			AGTTGAGGATGGAGGTGAAGG	0.597													12	52					0	0	1	0	0
PTGIS	5740	broad.mit.edu	37	20	48124509	48124510	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:48124509_48124510CC>TT	uc002xut.2	-	10	1504_1505	c.1450_1451GG>AA	c.(1450-1452)GGT>AAT	p.G484N	PTGIS_uc010zyi.1_Missense_Mutation_p.G345N	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	484					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	CTGCATCAGACCGAAGCCGTAC	0.545													13	38					0	0	1	0	0
PTGIS	5740	broad.mit.edu	37	20	48160882	48160882	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:48160882C>T	uc002xut.2	-	4	535	c.481G>A	c.(481-483)GAG>AAG	p.E161K	PTGIS_uc010zyi.1_Missense_Mutation_p.E22K	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	161					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	AGACCCATCTCGTGCCAGCCA	0.597													25	89					0	0	1	0	0
SLC9A8	23315	broad.mit.edu	37	20	48471989	48471989	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:48471989C>T	uc002xuv.1	+	8	794	c.584C>T	c.(583-585)TCC>TTC	p.S195F	SLC9A8_uc010zym.1_5'UTR|SLC9A8_uc010zyj.1_Missense_Mutation_p.S211F|SLC9A8_uc010zyk.1_Silent_p.L183L|SLC9A8_uc010zyl.1_Silent_p.L155L|SLC9A8_uc010gib.1_Silent_p.L149L	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	195	Helical; (Potential).					Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			GCGTTTGGCTCCCTAATATCT	0.438													47	138					0	0	1	0	0
SLC9A8	23315	broad.mit.edu	37	20	48472032	48472032	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:48472032C>T	uc002xuv.1	+	8	837	c.627C>T	c.(625-627)TTC>TTT	p.F209F	SLC9A8_uc010zym.1_5'UTR|SLC9A8_uc010zyj.1_Silent_p.F225F|SLC9A8_uc010zyk.1_Nonsense_Mutation_p.Q198*|SLC9A8_uc010zyl.1_Nonsense_Mutation_p.Q170*|SLC9A8_uc010gib.1_Nonsense_Mutation_p.Q164*	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	209	Helical; (Potential).					Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			TTGCCATTTTCAATGCACTTC	0.478													42	101					0	0	1	0	0
SNAI1	6615	broad.mit.edu	37	20	48600619	48600619	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:48600619C>T	uc002xuz.2	+	2	411	c.341C>T	c.(340-342)TCC>TTC	p.S114F		NM_005985	NP_005976	O95863	SNAI1_HUMAN	snail 1 homolog	114					epithelial to mesenchymal transition|mesoderm formation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	kinase binding|zinc ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			TCGTCCTTCTCCTCTACTTCA	0.632													13	154					0	0	1	0	0
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48760118	48760118	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:48760118G>A	uc002xvf.2	-	2	323	c.162C>T	c.(160-162)TTC>TTT	p.F54F	TMEM189_uc010zyq.1_RNA|TMEM189_uc002xvg.2_Silent_p.F54F|TMEM189_uc010gif.2_Silent_p.F54F	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	Error:Variant_position_missing_in_Q13404_after_alignment					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			CGATGAGGCTGAAGCACAGGA	0.632													11	14					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49211924	49211924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:49211924C>T	uc002xvm.2	-	16	2338	c.2020G>A	c.(2020-2022)GCA>ACA	p.A674T	FAM65C_uc010zyt.1_Missense_Mutation_p.A678T|FAM65C_uc010zyu.1_RNA	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	674										ovary(2)	2						ATGGATGTTGCCTTGCCGACC	0.552													43	103					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49218978	49218978	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:49218978G>A	uc002xvm.2	-	13	1596	c.1278C>T	c.(1276-1278)GGC>GGT	p.G426G	FAM65C_uc010zyt.1_Silent_p.G430G|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Silent_p.G426G	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	426										ovary(2)	2						AGGGCAGGAAGCCCACATCTG	0.637													25	66					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49219042	49219042	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:49219042G>A	uc002xvm.2	-	13	1532	c.1214C>T	c.(1213-1215)TCC>TTC	p.S405F	FAM65C_uc010zyt.1_Missense_Mutation_p.S409F|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.S405F	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	405										ovary(2)	2						AGAGCTGAAGGAGTCCATCTC	0.637													20	67					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49219119	49219119	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:49219119G>A	uc002xvm.2	-	13	1455	c.1137C>T	c.(1135-1137)ATC>ATT	p.I379I	FAM65C_uc010zyt.1_Silent_p.I383I|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Silent_p.I379I	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	379										ovary(2)	2						GGTAGCTGAGGATGGAGGTGG	0.647													6	78					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49227424	49227424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:49227424C>T	uc002xvm.2	-	6	698	c.380G>A	c.(379-381)AGG>AAG	p.R127K	FAM65C_uc010zyt.1_Missense_Mutation_p.R131K|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.R127K	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	127										ovary(2)	2						CCGAATGTGCCTTTCCACACA	0.597													33	86					0	0	1	0	0
ADNP	23394	broad.mit.edu	37	20	49511034	49511034	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:49511034G>A	uc002xvt.1	-	5	562	c.217C>T	c.(217-219)CCT>TCT	p.P73S	ADNP_uc002xvu.1_Missense_Mutation_p.P73S	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	73						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						CAGCAGAAAGGTTTTGTCCGA	0.393													22	70					0	0	1	0	0
KCNG1	3755	broad.mit.edu	37	20	49626345	49626345	+	Silent	SNP	C	T	T	rs140916173		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:49626345C>T	uc002xwa.3	-	2	826	c.531G>A	c.(529-531)GCG>GCA	p.A177A	KCNG1_uc002xwb.2_Silent_p.A177A	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	177	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						CCACCATCTCCGCGAACTCCT	0.701													22	94					0	0	1	0	0
KCNG1	3755	broad.mit.edu	37	20	49626490	49626490	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:49626490G>A	uc002xwa.3	-	2	681	c.386C>T	c.(385-387)ACC>ATC	p.T129I	KCNG1_uc002xwb.2_Missense_Mutation_p.T129I	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	129	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GCGCAGGAAGGTCAGGATAGT	0.632													23	61					0	0	1	0	0
KCNG1	3755	broad.mit.edu	37	20	49626504	49626504	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:49626504G>A	uc002xwa.3	-	2	667	c.372C>T	c.(370-372)TTC>TTT	p.F124F	KCNG1_uc002xwb.2_Silent_p.F124F	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	124	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GGATAGTGCCGAAGGCCCCCG	0.632													13	66					0	0	1	0	0
NFATC2	4773	broad.mit.edu	37	20	50048801	50048801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50048801G>A	uc002xwd.2	-	9	2745	c.2525C>T	c.(2524-2526)ACC>ATC	p.T842I	NFATC2_uc002xwc.2_Missense_Mutation_p.T842I|NFATC2_uc010zyv.1_Missense_Mutation_p.T623I|NFATC2_uc010zyw.1_Missense_Mutation_p.T623I|NFATC2_uc010zyx.1_Missense_Mutation_p.T822I|NFATC2_uc010zyy.1_Missense_Mutation_p.T623I|NFATC2_uc010zyz.1_Missense_Mutation_p.T623I|NFATC2_uc002xwe.2_Missense_Mutation_p.T822I	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	842					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					GCCAGGTCTGGTGGTGCCTGG	0.617													10	74					0	0	1	0	0
NFATC2	4773	broad.mit.edu	37	20	50139825	50139825	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50139825G>A	uc002xwd.2	-	2	1175	c.955C>T	c.(955-957)CCC>TCC	p.P319S	NFATC2_uc002xwc.2_Missense_Mutation_p.P319S|NFATC2_uc010zyv.1_Missense_Mutation_p.P100S|NFATC2_uc010zyw.1_Missense_Mutation_p.P100S|NFATC2_uc010zyx.1_Missense_Mutation_p.P299S|NFATC2_uc010zyy.1_Missense_Mutation_p.P100S|NFATC2_uc010zyz.1_Missense_Mutation_p.P100S|NFATC2_uc002xwe.2_Missense_Mutation_p.P299S	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	319					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					ATCTTGGGGGGGATCCCACAA	0.687													16	30					0	0	1	0	0
NFATC2	4773	broad.mit.edu	37	20	50159027	50159027	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50159027G>A	uc002xwd.2	-	1	232	c.12C>T	c.(10-12)CCC>CCT	p.P4P	NFATC2_uc002xwc.2_Silent_p.P4P|NFATC2_uc010zyv.1_5'UTR|NFATC2_uc010zyw.1_5'UTR|NFATC2_uc010zyx.1_Intron|NFATC2_uc010zyy.1_Intron|NFATC2_uc010zyz.1_Intron|NFATC2_uc002xwe.2_Intron	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	4					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					GCTGCCGCTCGGGGGCGTTCA	0.612													3	11					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50217819	50217819	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50217819G>A	uc002xwg.1	-	28	3075	c.3075C>T	c.(3073-3075)CTC>CTT	p.L1025L	ATP9A_uc010gih.1_Silent_p.L889L|ATP9A_uc002xwf.1_Silent_p.L197L	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	1025	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						CATAGAGGGGGAGGCAGCTGA	0.567													18	35					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50217868	50217868	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50217868G>A	uc002xwg.1	-	28	3026	c.3026C>T	c.(3025-3027)ACC>ATC	p.T1009I	ATP9A_uc010gih.1_Missense_Mutation_p.T873I|ATP9A_uc002xwf.1_Missense_Mutation_p.T181I	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	1009	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						GAATGACAAGGTGGCGATGAA	0.547													13	31					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50235567	50235567	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50235567C>T	uc002xwg.1	-	20	2131	c.2131G>A	c.(2131-2133)GAG>AAG	p.E711K	ATP9A_uc010gih.1_Missense_Mutation_p.E575K|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	711	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						AGGTGAGCCTCCCCGCGGTTG	0.592													13	36					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50290710	50290710	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50290710G>A	uc002xwg.1	-	11	1019	c.1019C>T	c.(1018-1020)TCC>TTC	p.S340F	ATP9A_uc010gih.1_Missense_Mutation_p.S204F|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	340	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						GATGATGTTGGAAAACAAGAG	0.512													15	60					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50329519	50329519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50329519C>T	uc002xwg.1	-	4	422	c.422G>A	c.(421-423)CGG>CAG	p.R141Q	ATP9A_uc010gih.1_Missense_Mutation_p.R126Q	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	141	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						TGCTGTGAGCCGGCTGTAGAC	0.637											OREG0026044	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	12					0	0	1	0	0
SALL4	57167	broad.mit.edu	37	20	50401220	50401220	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50401220G>A	uc002xwh.3	-	4	2847	c.2746C>T	c.(2746-2748)CAC>TAC	p.H916Y	SALL4_uc010gii.2_Missense_Mutation_p.H479Y|SALL4_uc002xwi.3_Missense_Mutation_p.H139Y	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	916	C2H2-type 7.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GTCATGTAGTGAACCTATGGG	0.468													19	64					0	0	1	0	0
ZFP64	55734	broad.mit.edu	37	20	50776819	50776819	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:50776819G>A	uc002xwl.2	-	5	955	c.606C>T	c.(604-606)CCC>CCT	p.P202P	ZFP64_uc002xwk.2_Silent_p.P202P|ZFP64_uc002xwm.2_Silent_p.P200P|ZFP64_uc002xwn.2_Silent_p.P148P	NM_018197	NP_060667	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform a	202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TACACTTGTAGGGCTTCACGC	0.547													51	104					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870386	51870386	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:51870386C>T	uc002xwo.2	+	2	1345	c.389C>T	c.(388-390)GCC>GTC	p.A130V		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	130					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GCTGTCTACGCCAACATCCTG	0.527													19	50					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870938	51870938	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:51870938C>T	uc002xwo.2	+	2	1897	c.941C>T	c.(940-942)TCG>TTG	p.S314L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	314					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			ACCATTTCCTCGAAAATGGTC	0.458													10	100					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871098	51871098	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:51871098C>T	uc002xwo.2	+	2	2057	c.1101C>T	c.(1099-1101)AGC>AGT	p.S367S		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	367					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			ATGGAGCCAGCTACACCTGGC	0.502													30	73					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871400	51871400	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:51871400G>A	uc002xwo.2	+	2	2359	c.1403G>A	c.(1402-1404)AGG>AAG	p.R468K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	468					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AAAAAAGAAAGGCCAGAGGAA	0.423													32	130					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871842	51871842	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:51871842G>A	uc002xwo.2	+	2	2801	c.1845G>A	c.(1843-1845)GGG>GGA	p.G615G		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	615					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AGGAGTGTGGGAAAGAAAGTC	0.507													9	114					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871891	51871891	+	Missense_Mutation	SNP	G	A	A	rs141129077		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:51871891G>A	uc002xwo.2	+	2	2850	c.1894G>A	c.(1894-1896)GAT>AAT	p.D632N		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	632					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CAGTGAGGGCGATTCTTTCCG	0.512													21	75					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871921	51871921	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:51871921G>A	uc002xwo.2	+	2	2880	c.1924G>A	c.(1924-1926)GAA>AAA	p.E642K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	642					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AACACCTCCAGAAGCCAAAAA	0.557													31	68					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872281	51872281	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:51872281G>A	uc002xwo.2	+	2	3240	c.2284G>A	c.(2284-2286)GAT>AAT	p.D762N		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	762					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TGAGAACAGCGATCAGCCCAT	0.532													12	95					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872446	51872446	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:51872446C>T	uc002xwo.2	+	2	3405	c.2449C>T	c.(2449-2451)CCC>TCC	p.P817S		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	817					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CTCCAGGGTCCCCCCCATGAA	0.552													34	82					0	0	1	0	0
BCAS1	8537	broad.mit.edu	37	20	52591936	52591937	+	Missense_Mutation	DNP	CC	TT	TT	rs139421363		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:52591936_52591937CC>TT	uc002xws.2	-	8	1511_1512	c.1173_1174GG>AA	c.(1171-1176)GCGGAG>GCAAAG	p.E392K	BCAS1_uc010zza.1_Intron|BCAS1_uc010zzb.1_Missense_Mutation_p.E340K|BCAS1_uc010gim.2_Intron|BCAS1_uc002xwt.2_Intron|BCAS1_uc010gil.1_Missense_Mutation_p.E392K	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	392						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			ACATTCTCCTCCGCACCTGTGG	0.411													11	33					0	0	1	0	0
BCAS1	8537	broad.mit.edu	37	20	52601976	52601976	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:52601976G>A	uc002xws.2	-	7	1328	c.990C>T	c.(988-990)TCC>TCT	p.S330S	BCAS1_uc010zza.1_Silent_p.S88S|BCAS1_uc010zzb.1_Silent_p.S278S|BCAS1_uc010gim.2_Silent_p.S278S|BCAS1_uc002xwt.2_Silent_p.S330S|BCAS1_uc010gil.1_Silent_p.S330S	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	330						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			GGGTCTCCTGGGATGTAAAGT	0.493													75	173					0	0	1	0	0
BCAS1	8537	broad.mit.edu	37	20	52645218	52645218	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:52645218G>A	uc002xws.2	-	4	774	c.436C>T	c.(436-438)CCG>TCG	p.P146S	BCAS1_uc010zzb.1_Missense_Mutation_p.P49S|BCAS1_uc010gim.2_Missense_Mutation_p.P49S|BCAS1_uc002xwt.2_Missense_Mutation_p.P146S|BCAS1_uc010gil.1_Missense_Mutation_p.P146S|BCAS1_uc010zzc.1_Missense_Mutation_p.P49S	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	146						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			TCCTGCCCCGGTCCAGCTGCC	0.592													27	62					0	0	1	0	0
BCAS1	8537	broad.mit.edu	37	20	52645297	52645297	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:52645297C>T	uc002xws.2	-	4	695	c.357G>A	c.(355-357)GTG>GTA	p.V119V	BCAS1_uc010zzb.1_Silent_p.V22V|BCAS1_uc010gim.2_Silent_p.V22V|BCAS1_uc002xwt.2_Silent_p.V119V|BCAS1_uc010gil.1_Silent_p.V119V|BCAS1_uc010zzc.1_Silent_p.V22V	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	119						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			CATCAAGCTTCACTGATCCAA	0.537													21	64					0	0	1	0	0
BCAS1	8537	broad.mit.edu	37	20	52645340	52645340	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:52645340C>T	uc002xws.2	-	4	652	c.314G>A	c.(313-315)GGA>GAA	p.G105E	BCAS1_uc010zzb.1_Missense_Mutation_p.G8E|BCAS1_uc010gim.2_Missense_Mutation_p.G8E|BCAS1_uc002xwt.2_Missense_Mutation_p.G105E|BCAS1_uc010gil.1_Missense_Mutation_p.G105E|BCAS1_uc010zzc.1_Missense_Mutation_p.G8E	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	105						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			TCCGGTACGTCCTGGTACAGG	0.522													10	53					0	0	1	0	0
CYP24A1	1591	broad.mit.edu	37	20	52789509	52789509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:52789509C>T	uc002xwv.2	-	2	786	c.388G>A	c.(388-390)GAG>AAG	p.E130K	CYP24A1_uc002xwu.1_5'Flank|CYP24A1_uc002xww.2_Missense_Mutation_p.E130K	NM_000782	NP_000773	Q07973	CP24A_HUMAN	cytochrome P450 family 24 subfamily A	130					hormone biosynthetic process|osteoblast differentiation|vitamin D catabolic process|vitamin D receptor signaling pathway|xenobiotic metabolic process	mitochondrial inner membrane	1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity|electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		STAD - Stomach adenocarcinoma(23;0.206)		Calcidiol(DB00146)|Calcitriol(DB00136)|Cholecalciferol(DB00169)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	GGTTTGATCTCCAGCCGCTGC	0.622													39	69					0	0	1	0	0
CYP24A1	1591	broad.mit.edu	37	20	52790077	52790077	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:52790077G>A	uc002xwv.2	-	1	440	c.42C>T	c.(40-42)TTC>TTT	p.F14F	CYP24A1_uc002xwu.1_5'Flank|CYP24A1_uc002xww.2_Silent_p.F14F	NM_000782	NP_000773	Q07973	CP24A_HUMAN	cytochrome P450 family 24 subfamily A	14					hormone biosynthetic process|osteoblast differentiation|vitamin D catabolic process|vitamin D receptor signaling pathway|xenobiotic metabolic process	mitochondrial inner membrane	1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity|electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		STAD - Stomach adenocarcinoma(23;0.206)		Calcidiol(DB00146)|Calcitriol(DB00136)|Cholecalciferol(DB00169)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	GCTGCTGCAGGAAGGCGGCAA	0.687													3	6					0	0	1	0	0
DOK5	55816	broad.mit.edu	37	20	53205028	53205028	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:53205028G>A	uc002xwy.2	+	3	401	c.181G>A	c.(181-183)GAA>AAA	p.E61K	DOK5_uc010gin.2_5'UTR|DOK5_uc002xwz.2_5'UTR	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	61	PH.						insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			TCAGGTTACAGAACTCAATAA	0.408													41	99					0	0	1	0	0
DOK5	55816	broad.mit.edu	37	20	53205055	53205055	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:53205055C>T	uc002xwy.2	+	3	428	c.208C>T	c.(208-210)CGA>TGA	p.R70*	DOK5_uc010gin.2_5'UTR|DOK5_uc002xwz.2_5'UTR	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	70	PH.						insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			GAACGTAGCTCGATTGCCAAA	0.408													59	133					0	0	1	0	0
DOK5	55816	broad.mit.edu	37	20	53266970	53266970	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:53266970G>A	uc002xwy.2	+	8	1093	c.873G>A	c.(871-873)CTG>CTA	p.L291L	DOK5_uc010gin.2_Silent_p.L183L|DOK5_uc002xwz.2_Silent_p.L153L	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	291							insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			CCAGCCCTCTGAAGCTTCATC	0.393													22	44					0	0	1	0	0
CBLN4	140689	broad.mit.edu	37	20	54573724	54573724	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:54573724G>A	uc002xxa.2	-	3	1280	c.495C>T	c.(493-495)GTC>GTT	p.V165V		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	165	C1q.					cell junction|extracellular region|synapse				ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			GGTAGAGCAGGACACCATTCG	0.423													44	78					0	0	1	0	0
CBLN4	140689	broad.mit.edu	37	20	54579090	54579090	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:54579090C>T	uc002xxa.2	-	1	923	c.138G>A	c.(136-138)TCG>TCA	p.S46S		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	46						cell junction|extracellular region|synapse				ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			TGGCCGGGTTCGAGTCGCACA	0.687													10	46					0	0	1	0	0
MC3R	4159	broad.mit.edu	37	20	54824044	54824044	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:54824044G>A	uc002xxb.2	+	1	257	c.145G>A	c.(145-147)GGC>AGC	p.G49S		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	86	Helical; Name=1; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding	p.G86R(1)		ovary(2)|breast(2)	4			Colorectal(105;0.202)			CCTGTCTCTGGGCATCGTCAG	0.567													23	137					0	0	1	0	0
MC3R	4159	broad.mit.edu	37	20	54824694	54824694	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:54824694C>T	uc002xxb.2	+	1	907	c.795C>T	c.(793-795)ATC>ATT	p.I265I		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	302	Helical; Name=6; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			TGGTCCTCATCATCACCTGCC	0.562													57	89					0	0	1	0	0
CSTF1	1477	broad.mit.edu	37	20	54978716	54978716	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:54978716C>T	uc002xxl.1	+	6	1429	c.1229C>T	c.(1228-1230)CCC>CTC	p.P410L	CSTF1_uc002xxm.1_Missense_Mutation_p.P410L|CSTF1_uc002xxn.1_Missense_Mutation_p.P410L|CSTF1_uc002xxo.1_Missense_Mutation_p.P353L	NM_001033521	NP_001028693	Q05048	CSTF1_HUMAN	cleavage stimulation factor subunit 1	410	WD 6.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding			central_nervous_system(1)	1			Colorectal(105;0.202)			CCCACCAACCCCGGGTTCATG	0.577													30	98					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55012584	55012584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:55012584C>T	uc002xxp.2	+	3	626	c.401C>T	c.(400-402)CCC>CTC	p.P134L	CASS4_uc002xxq.3_Missense_Mutation_p.P134L|CASS4_uc002xxr.2_Missense_Mutation_p.P134L|CASS4_uc010zze.1_Intron|CASS4_uc010gio.2_Missense_Mutation_p.P134L	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	134					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						TATGAATTCCCCGACCCTCCC	0.572													53	115					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55012616	55012616	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:55012616G>A	uc002xxp.2	+	3	658	c.433G>A	c.(433-435)GAA>AAA	p.E145K	CASS4_uc002xxq.3_Missense_Mutation_p.E145K|CASS4_uc002xxr.2_Missense_Mutation_p.E145K|CASS4_uc010zze.1_Intron|CASS4_uc010gio.2_Missense_Mutation_p.E145K	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	145					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AATCATCTGTGAAAAGACTCT	0.537													59	85					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55027387	55027387	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:55027387C>T	uc002xxp.2	+	6	1380	c.1155C>T	c.(1153-1155)TCC>TCT	p.S385S	CASS4_uc002xxq.3_Silent_p.S385S|CASS4_uc002xxr.2_Silent_p.S385S|CASS4_uc010zze.1_Silent_p.S331S|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	385	Ser-rich.				cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CATGGTTCTCCAGACGGACAA	0.537													11	31					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55027464	55027464	+	Missense_Mutation	SNP	C	T	T	rs112730552	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:55027464C>T	uc002xxp.2	+	6	1457	c.1232C>T	c.(1231-1233)TCC>TTC	p.S411F	CASS4_uc002xxq.3_Missense_Mutation_p.S411F|CASS4_uc002xxr.2_Missense_Mutation_p.S411F|CASS4_uc010zze.1_Missense_Mutation_p.S357F|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	411	Ser-rich.				cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AGCATCGTTTCCTCGTGCTCC	0.552													15	26					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55027865	55027865	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:55027865G>A	uc002xxp.2	+	6	1858	c.1633G>A	c.(1633-1635)GAA>AAA	p.E545K	CASS4_uc002xxq.3_Missense_Mutation_p.E545K|CASS4_uc002xxr.2_Missense_Mutation_p.E545K|CASS4_uc010zze.1_Missense_Mutation_p.E491K|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	545					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						TTGGCCTCTGGAAGTTCTTGT	0.498													23	54					0	0	1	0	0
BMP7	655	broad.mit.edu	37	20	55803379	55803379	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:55803379C>T	uc010gip.1	-	2	1046	c.517G>A	c.(517-519)GAA>AAA	p.E173K	BMP7_uc010giq.1_Missense_Mutation_p.E173K|BMP7_uc002xyc.2_Missense_Mutation_p.E173K	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	173					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			ATCCGGAATTCGGCTGCCGTG	0.537													70	136					0	0	1	0	0
SPO11	23626	broad.mit.edu	37	20	55908293	55908293	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:55908293A>C	uc002xye.2	+	3	388	c.295A>C	c.(295-297)AAG>CAG	p.K99Q	SPO11_uc002xyf.2_Missense_Mutation_p.K61Q	NM_012444	NP_036576	Q9Y5K1	SPO11_HUMAN	meiotic recombination protein SPO11 isoform a	99					female gamete generation|reciprocal meiotic recombination	chromosome|nucleus	ATP binding|DNA binding|hydrolase activity			breast(2)|skin(1)	3	Lung NSC(12;0.0066)|all_lung(29;0.0188)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.73e-14)|Epithelial(14;9.02e-10)|all cancers(14;9.31e-09)			CACCACCAGAAAGATCAAAAG	0.308								Editing_and_processing_nucleases					8	68					0	0	1	0	0
RBM38	55544	broad.mit.edu	37	20	55982841	55982841	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:55982841C>T	uc010zzj.1	+	4	834	c.659C>T	c.(658-660)CCC>CTC	p.P220L	RBM38_uc010zzk.1_3'UTR	NM_017495	NP_059965	Q9H0Z9	RBM38_HUMAN	RNA-binding region containing protein 1 isoform	220					3'-UTR-mediated mRNA stabilization|cell cycle|cell cycle arrest|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mRNA processing|negative regulation of cell proliferation|regulation of RNA splicing|RNA splicing	cytosol|cytosol|nucleus|nucleus	mRNA 3'-UTR binding|mRNA binding|nucleotide binding|RNA binding				0	Lung NSC(12;0.00242)|all_lung(29;0.00767)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.55e-12)|Epithelial(14;9.49e-09)|all cancers(14;5.01e-08)			GCCGCAGCACCCGCGGGCACC	0.672													3	3					0	0	1	0	0
Unknown	0	broad.mit.edu	37	20	56063627	56063627	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56063627C>T	uc010zzl.1	-	1	457	c.457G>A	c.(457-459)GAA>AAA	p.E153K		NM_001008735	NP_001008735			high-mobility group box 1-like 1																		TCGTATTTTTCCTTCAGCTTC	0.418													24	52					0	0	1	0	0
Unknown	0	broad.mit.edu	37	20	56063706	56063706	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56063706C>T	uc010zzl.1	-	1	378	c.378G>A	c.(376-378)GCG>GCA	p.A126A		NM_001008735	NP_001008735			high-mobility group box 1-like 1																		CCAGTTTCTTCGCAACATCAC	0.478													36	99					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56078540	56078540	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56078540C>T	uc010gix.1	-	9	2454	c.1792G>A	c.(1792-1794)GGT>AGT	p.G598S	CTCFL_uc010giw.1_Missense_Mutation_p.G598S|CTCFL_uc002xym.2_Missense_Mutation_p.G598S|CTCFL_uc010giz.1_Missense_Mutation_p.G186S|CTCFL_uc010giy.1_Missense_Mutation_p.G268S|CTCFL_uc010gja.1_Missense_Mutation_p.G548S|CTCFL_uc010gjb.1_Missense_Mutation_p.G598S|CTCFL_uc010gjc.1_Missense_Mutation_p.G598S|CTCFL_uc010gjd.1_Missense_Mutation_p.G598S|CTCFL_uc010gje.2_Missense_Mutation_p.G598S|CTCFL_uc010gjf.2_Missense_Mutation_p.G393S|CTCFL_uc010gjg.2_Missense_Mutation_p.G330S|CTCFL_uc010giu.2_RNA|CTCFL_uc010giv.2_RNA	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	598					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			TCCTTCTGACCCTTTGTGGCT	0.498													52	103					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56083794	56083794	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56083794G>A	uc010gix.1	-	8	2204	c.1542C>T	c.(1540-1542)TTC>TTT	p.F514F	CTCFL_uc010giw.1_Silent_p.F514F|CTCFL_uc002xym.2_Silent_p.F514F|CTCFL_uc010giz.1_Silent_p.F102F|CTCFL_uc010giy.1_Silent_p.F184F|CTCFL_uc010gja.1_Silent_p.F464F|CTCFL_uc010gjb.1_Silent_p.F514F|CTCFL_uc010gjc.1_Silent_p.F514F|CTCFL_uc010gjd.1_Silent_p.F514F|CTCFL_uc010gje.2_Silent_p.F514F|CTCFL_uc010gjf.2_Silent_p.F309F|CTCFL_uc010gjg.2_Silent_p.F246F|CTCFL_uc010gjh.1_Silent_p.F370F|CTCFL_uc010gji.1_Silent_p.F309F|CTCFL_uc010gjj.1_Silent_p.F514F|CTCFL_uc010giu.2_5'Flank|CTCFL_uc010giv.2_5'Flank	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	514	C2H2-type 10.				cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			AAAGGCAGGTGAATGGTTTCT	0.438													34	98					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56087734	56087734	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56087734C>T	uc010gix.1	-	7	2067	c.1405G>A	c.(1405-1407)GAA>AAA	p.E469K	CTCFL_uc010giw.1_Missense_Mutation_p.E469K|CTCFL_uc002xym.2_Missense_Mutation_p.E469K|CTCFL_uc010giz.1_Missense_Mutation_p.E57K|CTCFL_uc010giy.1_Missense_Mutation_p.E139K|CTCFL_uc010gja.1_Missense_Mutation_p.E419K|CTCFL_uc010gjb.1_Missense_Mutation_p.E469K|CTCFL_uc010gjc.1_Missense_Mutation_p.E469K|CTCFL_uc010gjd.1_Missense_Mutation_p.E469K|CTCFL_uc010gje.2_Missense_Mutation_p.E469K|CTCFL_uc010gjf.2_Missense_Mutation_p.E264K|CTCFL_uc010gjg.2_Missense_Mutation_p.E201K|CTCFL_uc010gjh.1_Intron|CTCFL_uc010gji.1_Missense_Mutation_p.E264K|CTCFL_uc010gjj.1_Missense_Mutation_p.E469K	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	469	C2H2-type 8.				cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			GCATAGCGTTCATGGAAGACA	0.443													22	48					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56094424	56094424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56094424C>T	uc010gix.1	-	3	1426	c.764G>A	c.(763-765)GGA>GAA	p.G255E	CTCFL_uc010giw.1_Missense_Mutation_p.G255E|CTCFL_uc002xym.2_Missense_Mutation_p.G255E|CTCFL_uc010giz.1_5'UTR|CTCFL_uc010giy.1_5'UTR|CTCFL_uc010gja.1_Missense_Mutation_p.G255E|CTCFL_uc010gjb.1_Missense_Mutation_p.G255E|CTCFL_uc010gjc.1_Missense_Mutation_p.G255E|CTCFL_uc010gjd.1_Missense_Mutation_p.G255E|CTCFL_uc010gje.2_Missense_Mutation_p.G255E|CTCFL_uc010gjf.2_Missense_Mutation_p.G50E|CTCFL_uc010gjg.2_5'UTR|CTCFL_uc010gjh.1_Missense_Mutation_p.G255E|CTCFL_uc010gji.1_Missense_Mutation_p.G50E|CTCFL_uc010gjj.1_Missense_Mutation_p.G255E|CTCFL_uc010gjk.1_Missense_Mutation_p.G255E|CTCFL_uc010gjl.1_Missense_Mutation_p.G255E	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	255					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			GTGGAAGGTTCCTTTTGCTCC	0.378													63	137					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56136651	56136651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56136651G>A	uc002xyn.3	+	2	347	c.184G>A	c.(184-186)GAA>AAA	p.E62K	PCK1_uc010zzm.1_5'UTR	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	62					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CCAGATGGAGGAAGAGGGCAT	0.607													41	81					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56137167	56137167	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56137167G>A	uc002xyn.3	+	3	428	c.265G>A	c.(265-267)GAA>AAA	p.E89K	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	89					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GGCCAGGATCGAAAGCAAGAC	0.557													15	40					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56137941	56137941	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56137941C>T	uc002xyn.3	+	4	759	c.596C>T	c.(595-597)CCT>CTT	p.P199L	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	199					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GTGGGGTGCCCTCTGCCTTTA	0.527													5	50					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56138249	56138249	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56138249G>A	uc002xyn.3	+	5	939	c.776G>A	c.(775-777)GGG>GAG	p.G259E	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	259					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			AAGGAGGAAGGGTGGCTGGCA	0.597													32	64					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56138689	56138689	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56138689G>A	uc002xyn.3	+	6	1030	c.867G>A	c.(865-867)GGG>GGA	p.G289G	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	289	GTP.				gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GCGCCTGCGGGAAGACCAACC	0.547													47	84					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56139282	56139282	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56139282C>T	uc002xyn.3	+	7	1182	c.1019C>T	c.(1018-1020)TCA>TTA	p.S340L	PCK1_uc010zzm.1_Missense_Mutation_p.S23L	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	340					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CCTGGGACTTCAGTGAAGACC	0.507													31	61					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56139555	56139555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56139555C>T	uc002xyn.3	+	8	1367	c.1204C>T	c.(1204-1206)CCC>TCC	p.P402S	PCK1_uc010zzm.1_Missense_Mutation_p.P85S	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	402					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			TTGTGCCCACCCCAACTCGAG	0.592													34	95					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56140423	56140423	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56140423G>A	uc002xyn.3	+	10	1595	c.1432G>A	c.(1432-1434)GAC>AAC	p.D478N	PCK1_uc010zzm.1_Missense_Mutation_p.D161N	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	478					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CATCATGCATGACCCCTTTGC	0.502													35	80					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56140524	56140524	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56140524C>T	uc002xyn.3	+	10	1696	c.1533C>T	c.(1531-1533)ATC>ATT	p.I511I	PCK1_uc010zzm.1_Silent_p.I194I	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	511					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			TGCCCAAGATCTTCCATGTCA	0.562													19	58					0	0	1	0	0
ZBP1	81030	broad.mit.edu	37	20	56189956	56189956	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56189956C>T	uc002xyo.2	-	4	770	c.489G>A	c.(487-489)ACG>ACA	p.T163T	ZBP1_uc010gjm.2_Silent_p.T163T|ZBP1_uc002xyp.2_Silent_p.T88T|ZBP1_uc010zzn.1_Silent_p.T163T	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	163	DRADA 2.					cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			GGCGGTAAATCGTCCATGCTT	0.552													50	128					0	0	1	0	0
PMEPA1	56937	broad.mit.edu	37	20	56234689	56234689	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56234689G>A	uc002xyq.2	-	2	567	c.174C>T	c.(172-174)ATC>ATT	p.I58I	PMEPA1_uc002xyr.2_Silent_p.I8I|PMEPA1_uc002xys.2_Silent_p.I23I|PMEPA1_uc002xyt.2_Silent_p.I8I	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	58	Helical; (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						GCAGGCACGTGatcaccacca	0.498													3	12					0	0	1	0	0
C20orf85	128602	broad.mit.edu	37	20	56735761	56735761	+	Silent	SNP	C	T	T	rs61749694	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:56735761C>T	uc002xyv.2	+	4	335	c.297C>T	c.(295-297)ATC>ATT	p.I99I		NM_178456	NP_848551	Q9H1P6	CT085_HUMAN	hypothetical protein LOC128602	99										ovary(1)	1	all_epithelial(3;5.99e-14)|Lung NSC(12;0.000152)|all_lung(29;0.000518)|Melanoma(10;0.118)		BRCA - Breast invasive adenocarcinoma(13;5.53e-12)|Epithelial(14;7.42e-08)|all cancers(14;7.19e-07)			AGGGCTTCATCGGCTGGAGAT	0.577													7	43					0	0	1	0	0
APCDD1L	164284	broad.mit.edu	37	20	57035978	57035978	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57035978C>T	uc002xze.1	-	4	1560	c.1374G>A	c.(1372-1374)GAG>GAA	p.E458E	APCDD1L_uc010zzp.1_Silent_p.E469E	NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	458						integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)		BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)			AGTCGGGGGCCTCCCCATGAC	0.627													28	74					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57415743	57415743	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57415743C>T	uc002xzt.2	+	1	949	c.582C>T	c.(580-582)CTC>CTT	p.L194L	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GGGAGGAGCTCAAGCCCGAGG	0.667			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			5	17					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57428860	57428860	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57428860G>A	uc002xzw.2	+	1	825	c.540G>A	c.(538-540)CAG>CAA	p.Q180Q	GNASAS_uc002xzs.1_5'Flank|GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			TTCTCTTACAGGTCCCAGACC	0.632			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			8	13					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57429363	57429363	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57429363G>A	uc002xzw.2	+	1	1328	c.1043G>A	c.(1042-1044)CGA>CAA	p.R348Q	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			AAGAGAGAGCGAGCAGAGAGA	0.642			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			6	13					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57478841	57478841	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57478841C>T	uc002xzw.2	+	5	2641	c.2356C>T	c.(2356-2358)CCT>TCT	p.P786S	GNAS_uc002xzt.2_3'UTR|GNAS_uc010gjq.2_Missense_Mutation_p.P84S|GNAS_uc002xzx.2_Missense_Mutation_p.P84S|GNAS_uc010gjr.2_Missense_Mutation_p.P34S|GNAS_uc002xzy.2_Missense_Mutation_p.P69S|GNAS_uc002yaa.2_Missense_Mutation_p.P129S|GNAS_uc010zzt.1_Missense_Mutation_p.P144S|GNAS_uc002yab.2_Intron|GNAS_uc002yad.2_Missense_Mutation_p.P34S|GNAS_uc002yae.2_Missense_Mutation_p.P68S	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	143					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CTTTGACTTCCCTCCCGTAAG	0.582			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			53	216					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57767539	57767539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57767539C>T	uc002yan.2	+	1	1465	c.1465C>T	c.(1465-1467)CCC>TCC	p.P489S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	489						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCACTCCGTCCCCACTCAGCT	0.701													19	58					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57767669	57767669	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57767669C>T	uc002yan.2	+	1	1595	c.1595C>T	c.(1594-1596)CCT>CTT	p.P532L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	532						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ACGCAGAAGCCTCTGAGCCCC	0.721													4	4					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57767876	57767876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57767876G>A	uc002yan.2	+	1	1802	c.1802G>A	c.(1801-1803)AGA>AAA	p.R601K		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	601						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGCAAGGGCAGAGCGGGCGGC	0.622													18	67					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57767944	57767944	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57767944G>A	uc002yan.2	+	1	1870	c.1870G>A	c.(1870-1872)GGG>AGG	p.G624R		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	624						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GCAGGTGTACGGGGATGAGAC	0.607													33	79					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57768049	57768050	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57768049_57768050CC>TT	uc002yan.2	+	1	1975_1976	c.1975_1976CC>TT	c.(1975-1977)CCT>TTT	p.P659F		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	659						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ACTGGGCTTTCCTCTGCAGAAA	0.579													20	62					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57768823	57768823	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57768823C>T	uc002yan.2	+	1	2749	c.2749C>T	c.(2749-2751)CCC>TCC	p.P917S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	917						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CGCAGAGCACCCCTCGCTGGC	0.632													22	46					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57768863	57768863	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57768863C>T	uc002yan.2	+	1	2789	c.2789C>T	c.(2788-2790)TCT>TTT	p.S930F		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	930						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGAGTGCTCTCTGCCCTGGCA	0.642													27	58					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57769146	57769146	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57769146G>A	uc002yan.2	+	1	3072	c.3072G>A	c.(3070-3072)GGG>GGA	p.G1024G		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1024						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGTTGGGGGGGGACAAGGGGG	0.682													10	17					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57769732	57769732	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57769732G>A	uc002yan.2	+	1	3658	c.3658G>A	c.(3658-3660)GGT>AGT	p.G1220S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1220						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCGAGATGAGGGTCCCAATGG	0.627													11	19					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57771017	57771017	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:57771017C>T	uc002yan.2	+	2	3832	c.3832C>T	c.(3832-3834)CGT>TGT	p.R1278C		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1278						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AAAGATGTCTCGTGGGAACAG	0.498													36	147					0	0	1	0	0
PHACTR3	116154	broad.mit.edu	37	20	58330267	58330267	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:58330267G>A	uc002yau.2	+	4	856	c.389G>A	c.(388-390)GGA>GAA	p.G130E	PHACTR3_uc002yat.2_Missense_Mutation_p.G127E|PHACTR3_uc010zzw.1_Missense_Mutation_p.G89E|PHACTR3_uc002yav.2_Missense_Mutation_p.G89E|PHACTR3_uc002yaw.2_Missense_Mutation_p.G89E|PHACTR3_uc002yax.2_Missense_Mutation_p.G89E	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	130						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			AACCCCGATGGAGGACCCCGA	0.577													16	49					0	0	1	0	0
PHACTR3	116154	broad.mit.edu	37	20	58342389	58342389	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:58342389C>T	uc002yau.2	+	5	1157	c.690C>T	c.(688-690)AGC>AGT	p.S230S	PHACTR3_uc002yat.2_Silent_p.S227S|PHACTR3_uc010zzw.1_Silent_p.S189S|PHACTR3_uc002yav.2_Silent_p.S189S|PHACTR3_uc002yaw.2_Silent_p.S189S|PHACTR3_uc002yax.2_Intron	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	230	Pro-rich.					nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			AGCTCCCCAGCCCCCCACTGC	0.592													19	38					0	0	1	0	0
PHACTR3	116154	broad.mit.edu	37	20	58342391	58342391	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:58342391C>T	uc002yau.2	+	5	1159	c.692C>T	c.(691-693)CCC>CTC	p.P231L	PHACTR3_uc002yat.2_Missense_Mutation_p.P228L|PHACTR3_uc010zzw.1_Missense_Mutation_p.P190L|PHACTR3_uc002yav.2_Missense_Mutation_p.P190L|PHACTR3_uc002yaw.2_Missense_Mutation_p.P190L|PHACTR3_uc002yax.2_Intron	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	231	Pro-rich.					nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			CTCCCCAGCCCCCCACTGCTG	0.592													18	38					0	0	1	0	0
SYCP2	10388	broad.mit.edu	37	20	58491601	58491601	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:58491601G>A	uc002yaz.2	-	7	592	c.453C>T	c.(451-453)TTC>TTT	p.F151F	SYCP2_uc010gju.1_Silent_p.F52F	NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	151					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			TGCGAGGTACGAAACTTTCCA	0.294													7	77					0	0	1	0	0
PPP1R3D	5509	broad.mit.edu	37	20	58514657	58514657	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:58514657G>A	uc002ybb.2	-	1	696	c.330C>T	c.(328-330)GGC>GGT	p.G110G	C20orf177_uc002yba.2_Intron|C20orf177_uc010zzx.1_5'Flank|C20orf177_uc002ybc.2_5'Flank	NM_006242	NP_006233	O95685	PPR3D_HUMAN	protein phosphatase 1, regulatory subunit 3D	110					glycogen metabolic process		protein binding|protein serine/threonine phosphatase activity				0	all_lung(29;0.00391)		BRCA - Breast invasive adenocarcinoma(7;5.12e-09)			CCAGCTCCAAGCCCAGGGCGT	0.622													10	25					0	0	1	0	0
C20orf177	63939	broad.mit.edu	37	20	58519433	58519433	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:58519433C>T	uc002yba.2	+	5	850	c.435C>T	c.(433-435)TTC>TTT	p.F145F	C20orf177_uc010zzx.1_Intron|C20orf177_uc002ybc.2_Silent_p.F145F	NM_022106	NP_071389	Q9NTX9	CT177_HUMAN	hypothetical protein LOC63939	145										ovary(2)|breast(1)	3	all_lung(29;0.00693)		BRCA - Breast invasive adenocarcinoma(7;1.22e-08)			ATCCTAATTTCCTTCCATCCC	0.483													8	101					0	0	1	0	0
CDH26	60437	broad.mit.edu	37	20	58533821	58533821	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:58533821C>A	uc002ybe.2	+	1	340	c.40C>A	c.(40-42)CTT>ATT	p.L14I	CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	14					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			gctgctgctgcttctagtgct	0.478													7	29					2.7689e-08	2.7766e-08	1	1	0
CDH26	60437	broad.mit.edu	37	20	58567466	58567466	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:58567466C>T	uc002ybe.2	+	10	1617	c.1317C>T	c.(1315-1317)GTC>GTT	p.V439V	CDH26_uc002ybf.1_Silent_p.V19V|CDH26_uc010zzy.1_RNA|CDH26_uc002ybg.2_5'Flank	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	439	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			CAAATTGGGTCAGCGTCGACA	0.383													11	40					0	0	1	0	0
CDH4	1002	broad.mit.edu	37	20	60348221	60348221	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60348221C>T	uc002ybn.1	+	4	573	c.559C>T	c.(559-561)CCG>TCG	p.P187S	CDH4_uc002ybp.1_Missense_Mutation_p.P113S	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	187	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CGGGCCCTTCCCGCAGCAGCT	0.701													5	4					0	0	1	0	0
HRH3	11255	broad.mit.edu	37	20	60791572	60791572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60791572C>T	uc002ycf.2	-	3	1125	c.828G>A	c.(826-828)GGG>GGA	p.G276G	HRH3_uc002ycg.2_Intron|HRH3_uc002ych.2_Intron|HRH3_uc002yci.2_Silent_p.G276G	NM_007232	NP_009163	Q9Y5N1	HRH3_HUMAN	histamine receptor H3	276	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|neurotransmitter secretion	integral to plasma membrane	histamine receptor activity				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;7.08e-07)		Histamine Phosphate(DB00667)	CCTCACCCACCCCATACCTGT	0.756													5	7					0	0	1	0	0
HRH3	11255	broad.mit.edu	37	20	60791598	60791598	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60791598C>T	uc002ycf.2	-	3	1099	c.802G>A	c.(802-804)GAG>AAG	p.E268K	HRH3_uc002ycg.2_Missense_Mutation_p.E268K|HRH3_uc002ych.2_Missense_Mutation_p.E268K|HRH3_uc002yci.2_Missense_Mutation_p.E268K	NM_007232	NP_009163	Q9Y5N1	HRH3_HUMAN	histamine receptor H3	268	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|neurotransmitter secretion	integral to plasma membrane	histamine receptor activity				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;7.08e-07)		Histamine Phosphate(DB00667)	GGCATGGCCTCCCCGTGCCCC	0.776													5	7					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60886272	60886272	+	Missense_Mutation	SNP	C	T	T	rs112963711	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60886272C>T	uc002ycq.2	-	73	10101	c.10034G>A	c.(10033-10035)GGT>GAT	p.G3345D		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3345	Laminin G-like 4.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGACAGGGAACCCCCAAACTG	0.701													14	52					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60887760	60887760	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60887760T>C	uc002ycq.2	-	67	9222	c.9155A>G	c.(9154-9156)GAG>GGG	p.E3052G		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3052	Laminin G-like 2.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATTGTCCTGCTCCACGCTGTA	0.687													3	12					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60899610	60899610	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60899610C>T	uc002ycq.2	-	42	5597	c.5530G>A	c.(5530-5532)GAA>AAA	p.E1844K		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1844	Laminin EGF-like 16; second part.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGGGCACATTCCTGAGGGTGT	0.627													9	11					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60902947	60902947	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60902947G>A	uc002ycq.2	-	36	4839	c.4772C>T	c.(4771-4773)CCC>CTC	p.P1591L		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1591	Laminin EGF-like 15.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCCTGTGAGGGGGTCACACAC	0.662													27	45					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60904229	60904229	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60904229G>A	uc002ycq.2	-	33	4267	c.4200C>T	c.(4198-4200)TTC>TTT	p.F1400F		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1400	Domain IV 1 (domain IV B).				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGTGGCTGATGAAGTCATAGG	0.632													26	71					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60908263	60908263	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60908263G>A	uc002ycq.2	-	26	3232	c.3165C>T	c.(3163-3165)TTC>TTT	p.F1055F		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1055	Domain IV 1 (domain IV B).				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CGGCCGAGGGGAAGCCATCCA	0.711													12	31					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60911420	60911420	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60911420G>A	uc002ycq.2	-	18	2366	c.2299C>T	c.(2299-2301)CCC>TCC	p.P767S		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	767	Laminin EGF-like 9.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGGTTGCTGGGGCTCAGTCCC	0.622													23	62					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60912783	60912783	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60912783G>A	uc002ycq.2	-	16	2094	c.2027C>T	c.(2026-2028)CCC>CTC	p.P676L		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	676	Laminin EGF-like 7.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCAGTGGCAGGCTGCAGACAA	0.662													12	38					0	0	1	0	0
C20orf151	140893	broad.mit.edu	37	20	60987918	60987918	+	Missense_Mutation	SNP	C	T	T	rs145375194	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60987918C>T	uc002ycw.1	-	12	1871	c.1714G>A	c.(1714-1716)GAA>AAA	p.E572K		NM_080833	NP_543023	Q8NC74	CT151_HUMAN	hypothetical protein LOC140893	572											0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;6.43e-06)			TCATCCAGTTCGTCGGACTCT	0.652													29	74					0	0	1	0	0
C20orf151	140893	broad.mit.edu	37	20	60991260	60991260	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:60991260C>T	uc002ycw.1	-	6	503	c.346G>A	c.(346-348)GAG>AAG	p.E116K		NM_080833	NP_543023	Q8NC74	CT151_HUMAN	hypothetical protein LOC140893	116											0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;6.43e-06)			TTCAAGGTCTCGTTCTCTTCC	0.637													7	34					0	0	1	0	0
GATA5	140628	broad.mit.edu	37	20	61040427	61040427	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61040427G>A	uc002ycx.1	-	6	1069	c.1007C>T	c.(1006-1008)CCA>CTA	p.P336L		NM_080473	NP_536721	Q9BWX5	GATA5_HUMAN	GATA binding protein 5	336					blood coagulation|intestinal epithelial cell differentiation|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding				0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;3.08e-06)			AGGGCACACTGGGGACGCCAG	0.672													7	19					0	0	1	0	0
NTSR1	4923	broad.mit.edu	37	20	61386197	61386197	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61386197C>T	uc002ydf.2	+	2	1246	c.875C>T	c.(874-876)CCT>CTT	p.P292L		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	292	Cytoplasmic (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			GCCATCGAGCCTGGCAGGGTC	0.687													12	29					0	0	1	0	0
COL9A3	1299	broad.mit.edu	37	20	61459284	61459284	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61459284G>A	uc002ydm.2	+	17	859	c.856G>A	c.(856-858)GGT>AGT	p.G286S		NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	286	Triple-helical region 3 (COL3).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					GGGCAGACCTGGTCCCAAGGG	0.642													33	49					0	0	1	0	0
COL9A3	1299	broad.mit.edu	37	20	61468560	61468560	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61468560C>T	uc002ydm.2	+	30	1732	c.1729C>T	c.(1729-1731)CGA>TGA	p.R577*	COL9A3_uc002ydn.2_Nonsense_Mutation_p.R71*	NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	577	Triple-helical region 2 (COL2).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					CCCTGGCGCTCGAGGACCCCC	0.672													44	90					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61511288	61511288	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61511288G>A	uc002ydr.1	-	16	6284	c.6020C>T	c.(6019-6021)TCG>TTG	p.S2007L	DIDO1_uc002yds.1_Missense_Mutation_p.S2007L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	2007	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GTGAAATCGCGAAGGGGTCTG	0.632													14	191					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61511765	61511765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61511765G>A	uc002ydr.1	-	16	5807	c.5543C>T	c.(5542-5544)CCC>CTC	p.P1848L	DIDO1_uc002yds.1_Missense_Mutation_p.P1848L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1848	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTCCCCATGGGGATCCTTGCG	0.607													13	117					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61513219	61513219	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61513219G>A	uc002ydr.1	-	16	4353	c.4089C>T	c.(4087-4089)ATC>ATT	p.I1363I	DIDO1_uc002yds.1_Silent_p.I1363I	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1363					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					ACTGCTGGACGATCGGATCTA	0.622													57	128					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61525396	61525396	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61525396G>A	uc002ydr.1	-	12	2987	c.2723C>T	c.(2722-2724)CCT>CTT	p.P908L	DIDO1_uc002yds.1_Missense_Mutation_p.P908L|DIDO1_uc002ydt.1_Missense_Mutation_p.P908L|DIDO1_uc002ydu.1_Missense_Mutation_p.P908L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	908					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GGCAACTTCAGGCACAGCCTC	0.532													47	89					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61542375	61542375	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61542375G>A	uc002ydr.1	-	3	854	c.590C>T	c.(589-591)CCC>CTC	p.P197L	DIDO1_uc002yds.1_Missense_Mutation_p.P197L|DIDO1_uc002ydt.1_Missense_Mutation_p.P197L|DIDO1_uc002ydu.1_Missense_Mutation_p.P197L|DIDO1_uc002ydv.1_Missense_Mutation_p.P197L|DIDO1_uc002ydw.1_Missense_Mutation_p.P197L|DIDO1_uc002ydx.1_Missense_Mutation_p.P197L|DIDO1_uc011aao.1_Missense_Mutation_p.P197L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	197					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					AGTCTCGGCGGGACCCTCCTC	0.657													28	35					0	0	1	0	0
SLC17A9	63910	broad.mit.edu	37	20	61588800	61588800	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61588800G>A	uc002yea.3	+	3	449	c.265G>A	c.(265-267)GGT>AGT	p.G89S	SLC17A9_uc002ydz.3_Missense_Mutation_p.G83S|SLC17A9_uc011aap.1_Missense_Mutation_p.G109S	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	89					exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						CAGGATTGGGGGTGAGAAGGT	0.642													25	55					0	0	1	0	0
SLC17A9	63910	broad.mit.edu	37	20	61596512	61596512	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61596512C>T	uc002yea.3	+	9	1123	c.939C>T	c.(937-939)CTC>CTT	p.L313L	SLC17A9_uc002ydz.3_Silent_p.L307L|SLC17A9_uc011aap.1_Silent_p.L333L	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	313					exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						TGCGGAAGCTCATGCAGGTAG	0.577													21	42					0	0	1	0	0
YTHDF1	54915	broad.mit.edu	37	20	61834443	61834443	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61834443G>A	uc002yeh.2	-	4	1143	c.849C>T	c.(847-849)GCC>GCT	p.A283A	YTHDF1_uc011aaq.1_Silent_p.A233A	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	283	Gln/Pro-rich.			AP -> PH (in Ref. 5; CAD39029).						ovary(2)	2						GGGGGACTGGGGCCTTCGGCA	0.652													36	100					0	0	1	0	0
YTHDF1	54915	broad.mit.edu	37	20	61834932	61834932	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61834932G>A	uc002yeh.2	-	4	654	c.360C>T	c.(358-360)TTC>TTT	p.F120F	YTHDF1_uc011aaq.1_Silent_p.F70F	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	120										ovary(2)	2						GGAAAAAATTGAACCTGTGCT	0.542													23	64					0	0	1	0	0
ARFGAP1	55738	broad.mit.edu	37	20	61908562	61908562	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61908562C>T	uc002yem.2	+	5	460	c.348C>T	c.(346-348)GTC>GTT	p.V116V	ARFGAP1_uc011aas.1_Silent_p.V63V|ARFGAP1_uc011aat.1_Intron|ARFGAP1_uc002yel.2_Silent_p.V116V|ARFGAP1_uc002yen.2_Silent_p.V116V	NM_018209	NP_060679	Q8N6T3	ARFG1_HUMAN	ADP-ribosylation factor GTPase activating	116	Arf-GAP.				COPI coating of Golgi vesicle|protein transport|regulation of ARF GTPase activity|retrograde vesicle-mediated transport, Golgi to ER	cytosol|Golgi-associated vesicle membrane	ARF GTPase activator activity|zinc ion binding			pancreas(1)	1	all_cancers(38;1.59e-09)					GTCAGGTGGTCGCTCTGGCCG	0.667													10	21					0	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61939428	61939428	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61939428G>A	uc011aau.1	+	7	861	c.761G>A	c.(760-762)GGG>GAG	p.G254E	COL20A1_uc011aav.1_Missense_Mutation_p.G75E	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	254	VWFA.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					TACAAGGGGGGGAACACGTTC	0.627													12	28					0	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61940042	61940042	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61940042G>A	uc011aau.1	+	8	1024	c.924G>A	c.(922-924)GTG>GTA	p.V308V	COL20A1_uc011aav.1_Silent_p.V129V	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	308	VWFA.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					ACCTGGGCGTGAACGTCTTCG	0.657													8	8					0	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61945235	61945235	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61945235G>A	uc011aau.1	+	18	2450	c.2350G>A	c.(2350-2352)GAG>AAG	p.E784K	COL20A1_uc011aav.1_Missense_Mutation_p.E605K	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	784	Fibronectin type-III 6.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CTTGGGACCCGAGAAATCCGT	0.672													4	32					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61978179	61978179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61978179C>T	uc002yes.2	-	6	1973	c.1795G>A	c.(1795-1797)GAC>AAC	p.D599N	CHRNA4_uc002yet.1_Missense_Mutation_p.D423N|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Missense_Mutation_p.D528N|CHRNA4_uc002yev.1_Missense_Mutation_p.D423N|CHRNA4_uc010gkf.1_Missense_Mutation_p.D423N	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	599	Cytoplasmic (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	AAGATGCGGTCGATGACCATG	0.657													30	59					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981797	61981797	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61981797G>A	uc002yes.2	-	5	1144	c.966C>T	c.(964-966)GTC>GTT	p.V322V	CHRNA4_uc002yet.1_Silent_p.V146V|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.V251V|CHRNA4_uc002yev.1_Silent_p.V146V|CHRNA4_uc010gkf.1_Silent_p.V146V	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	322	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	AGACCGTGATGACGATGGACA	0.607													35	82					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981878	61981878	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61981878G>A	uc002yes.2	-	5	1063	c.885C>T	c.(883-885)ATC>ATT	p.I295I	CHRNA4_uc002yet.1_Silent_p.I119I|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.I224I|CHRNA4_uc002yev.1_Silent_p.I119I|CHRNA4_uc010gkf.1_Silent_p.I119I	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	295					B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	TGGACGGGATGATCTCGGTGA	0.577													27	62					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61982370	61982370	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61982370C>T	uc002yes.2	-	5	571	c.393G>A	c.(391-393)GGG>GGA	p.G131G	CHRNA4_uc002yet.1_5'UTR|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.G60G|CHRNA4_uc002yev.1_5'UTR|CHRNA4_uc010gkf.1_5'UTR	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	131	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	CCGCGAAGTCCCCGTCAGCAC	0.443													6	35					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61990996	61990996	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:61990996G>A	uc002yes.2	-	2	310	c.132C>T	c.(130-132)CTC>CTT	p.L44L	CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_5'UTR|CHRNA4_uc002yev.1_5'UTR|CHRNA4_uc010gkf.1_5'UTR	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	44	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	AACCGGAGAAGAGTTTCTTCA	0.652													7	77					0	0	1	0	0
KCNQ2	3785	broad.mit.edu	37	20	62039787	62039787	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62039787C>T	uc002yey.1	-	16	2043	c.1866G>A	c.(1864-1866)CGG>CGA	p.R622R	KCNQ2_uc002yez.1_Silent_p.R591R|KCNQ2_uc002yfa.1_Silent_p.R604R|KCNQ2_uc002yfb.1_Silent_p.R594R	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	622	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CCTTCCCGAGCCGTCCCATCA	0.706													6	19					0	0	1	0	0
KCNQ2	3785	broad.mit.edu	37	20	62070963	62070963	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62070963G>A	uc002yey.1	-	6	1092	c.915C>T	c.(913-915)TTC>TTT	p.F305F	KCNQ2_uc002yez.1_Silent_p.F305F|KCNQ2_uc002yfa.1_Silent_p.F305F|KCNQ2_uc002yfb.1_Silent_p.F305F|KCNQ2_uc011aax.1_Silent_p.F305F|KCNQ2_uc002yfc.1_Silent_p.F305F	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	305	Helical; Name=Segment S6; (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CAGGCAGCGCGAAGAAGGAGA	0.632													26	96					0	0	1	0	0
EEF1A2	1917	broad.mit.edu	37	20	62126323	62126323	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62126323C>T	uc002yfd.1	-	3	557	c.456G>A	c.(454-456)GTG>GTA	p.V152V	EEF1A2_uc002yfe.1_Silent_p.V152V|EEF1A2_uc010gkg.1_Silent_p.V152V	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	152						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			CCATTTTGTTCACGCCCACGA	0.607													13	96					0	0	1	0	0
EEF1A2	1917	broad.mit.edu	37	20	62126344	62126344	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62126344C>T	uc002yfd.1	-	3	536	c.435G>A	c.(433-435)GTG>GTA	p.V145V	EEF1A2_uc002yfe.1_Silent_p.V145V|EEF1A2_uc010gkg.1_Silent_p.V145V	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	145						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			TGAGCTGCTTCACACCCAGCG	0.622													31	93					0	0	1	0	0
PTK6	5753	broad.mit.edu	37	20	62165016	62165016	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62165016C>T	uc002yfg.2	-	4	598	c.558G>A	c.(556-558)AGG>AGA	p.R186R	PTK6_uc011aay.1_Silent_p.R85R|PTK6_uc011aaz.1_5'Flank	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	186						cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			CCTCCCTCGGCCTCTCCCAGT	0.632													42	85					0	0	1	0	0
SRMS	6725	broad.mit.edu	37	20	62178550	62178550	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62178550G>A	uc002yfi.1	-	1	308	c.267C>T	c.(265-267)TTC>TTT	p.F89F		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	89	SH3.						ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|lung(1)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			GCCTGCGTGCGAAGATGTAGC	0.672													14	41					0	0	1	0	0
SRMS	6725	broad.mit.edu	37	20	62178649	62178649	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62178649G>A	uc002yfi.1	-	1	209	c.168C>T	c.(166-168)TTC>TTT	p.F56F		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	56	SH3.						ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|lung(1)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			AGAGCGCAAGGAAGAGCTGAG	0.701													6	20					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62192276	62192276	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62192276G>A	uc002yfm.2	-	16	8045	c.7153C>T	c.(7153-7155)CTT>TTT	p.L2385F	PRIC285_uc002yfl.1_Missense_Mutation_p.L1816F	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2385					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			TCTCCGAGAAGAACCACCTGG	0.642													17	99					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62195402	62195402	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62195402G>A	uc002yfm.2	-	9	5665	c.4773C>T	c.(4771-4773)CCC>CCT	p.P1591P	PRIC285_uc002yfl.1_Silent_p.P1022P	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1591					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GCGTGTCGGGGGGACTGCCCC	0.687													4	10					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62203493	62203493	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62203493G>A	uc002yfm.2	-	2	1138	c.246C>T	c.(244-246)CCC>CCT	p.P82P	PRIC285_uc002yfn.2_Silent_p.P82P	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	82					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			AGAGTCCCGGGGGTGGGGAAC	0.632													5	15					0	0	1	0	0
GMEB2	26205	broad.mit.edu	37	20	62221711	62221711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62221711G>A	uc002yfp.1	-	9	1803	c.1324C>T	c.(1324-1326)CCC>TCC	p.P442S	GMEB2_uc002yfo.1_Missense_Mutation_p.P364S|GMEB2_uc002yfq.1_Missense_Mutation_p.P442S	NM_012384	NP_036516	Q9UKD1	GMEB2_HUMAN	glucocorticoid modulatory element binding	442					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|metal ion binding				0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;4.79e-09)|all cancers(9;2.76e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.0114)			ACTGTGCTGGGGTAGGTGGAG	0.697													9	25					0	0	1	0	0
STMN3	50861	broad.mit.edu	37	20	62275220	62275220	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62275220G>A	uc002yfr.1	-	3	262	c.180C>T	c.(178-180)TCC>TCT	p.S60S	STMN3_uc011abb.1_Silent_p.S60S	NM_015894	NP_056978	Q9NZ72	STMN3_HUMAN	SCG10-like-protein	60					cytoplasmic microtubule organization|intracellular signal transduction|negative regulation of Rac protein signal transduction|neuron projection development|regulation of cytoskeleton organization|regulation of Rac GTPase activity	cytoplasm	protein domain specific binding				0	all_cancers(38;2.31e-11)|all_epithelial(29;7.76e-13)		Epithelial(9;1.9e-09)|all cancers(9;1.22e-08)|BRCA - Breast invasive adenocarcinoma(10;8.86e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.00559)			GGTCAGAAGGGGACTTGAGGA	0.617													41	100					0	0	1	0	0
ZBTB46	140685	broad.mit.edu	37	20	62407280	62407280	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62407280C>T	uc002ygv.1	-	3	1174	c.973G>A	c.(973-975)GAC>AAC	p.D325N	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	325					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					CCTCGGCTGTCGGAGCTGCTG	0.637													29	54					0	0	1	0	0
ZNF512B	57473	broad.mit.edu	37	20	62598022	62598022	+	Missense_Mutation	SNP	G	A	A	rs140764494	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62598022G>A	uc002yhl.1	-	5	560	c.506C>T	c.(505-507)CCT>CTT	p.P169L		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	169					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					CTTGGAGGCAGGCAGGGGTCG	0.622													22	79					0	0	1	0	0
PRPF6	24148	broad.mit.edu	37	20	62632583	62632583	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62632583C>T	uc002yho.2	+	9	1345	c.1177C>T	c.(1177-1179)CTT>TTT	p.L393F	PRPF6_uc002yhp.2_Missense_Mutation_p.L393F	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	393	HAT 1.				assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					GAAGCGGGTTCTTCGGAAAGG	0.587													23	39					0	0	1	0	0
PRPF6	24148	broad.mit.edu	37	20	62658387	62658388	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62658387_62658388CC>TT	uc002yho.2	+	16	2249_2250	c.2081_2082CC>TT	c.(2080-2082)GCC>GTT	p.A694V	PRPF6_uc002yhp.2_Missense_Mutation_p.A654V	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	694	HAT 7.				assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					ATCAGGGCAGCCCAAGATCTGT	0.574													27	50					0	0	1	0	0
PRPF6	24148	broad.mit.edu	37	20	62659058	62659058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62659058C>T	uc002yho.2	+	17	2476	c.2308C>T	c.(2308-2310)CGT>TGT	p.R770C	PRPF6_uc002yhp.2_Missense_Mutation_p.R730C	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	770					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					GGAAAAGTCTCGTCTGAAGAA	0.607													58	145					0	0	1	0	0
OPRL1	4987	broad.mit.edu	37	20	62729258	62729258	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62729258C>T	uc002yic.2	+	4	739	c.337C>T	c.(337-339)CTG>TTG	p.L113L	OPRL1_uc002yid.2_Silent_p.L113L|OPRL1_uc002yif.3_Silent_p.L108L	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	113	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					GGACATCCTCCTGGGCTTCTG	0.532													60	103					0	0	1	0	0
OPRL1	4987	broad.mit.edu	37	20	62729720	62729720	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62729720C>T	uc002yic.2	+	5	1083	c.681C>T	c.(679-681)CCC>CCT	p.P227P	OPRL1_uc002yid.2_Silent_p.P227P|OPRL1_uc002yif.3_Silent_p.P222P	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	227	Helical; Name=5; (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					TCATCGTCCCCGTGCTCGTCA	0.622													58	116					0	0	1	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737853	62737853	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62737853G>A	uc011abt.1	-	1	332	c.332C>T	c.(331-333)CCC>CTC	p.P111L		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	111	Extracellular (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					CTCCCCGAAGGGCCAGTACTG	0.607													16	33					0	0	1	0	0
MYT1	4661	broad.mit.edu	37	20	62839224	62839224	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62839224C>T	uc002yii.2	+	7	1039	c.675C>T	c.(673-675)GTC>GTT	p.V225V	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	225	Glu-rich.				cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					AGGAGGTCGTCGAAGTCACCA	0.607													13	31					0	0	1	0	0
MYT1	4661	broad.mit.edu	37	20	62839329	62839329	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62839329G>A	uc002yii.2	+	7	1144	c.780G>A	c.(778-780)GAG>GAA	p.E260E	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	260	Glu-rich.				cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					ACgaagaggaggacgaggagg	0.284													5	9					0	0	1	0	0
MYT1	4661	broad.mit.edu	37	20	62844957	62844957	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62844957G>A	uc002yii.2	+	10	1952	c.1588G>A	c.(1588-1590)GGA>AGA	p.G530R	MYT1_uc002yih.2_Missense_Mutation_p.G232R|MYT1_uc002yij.2_Missense_Mutation_p.G162R	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	530					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GCCGCAGACAGGAGATCCTTC	0.542													27	45					0	0	1	0	0
MYT1	4661	broad.mit.edu	37	20	62871152	62871152	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62871152G>A	uc002yii.2	+	22	3497	c.3133G>A	c.(3133-3135)GAG>AAG	p.E1045K	MYT1_uc002yij.2_Missense_Mutation_p.E704K|MYT1_uc002yik.2_Missense_Mutation_p.E11K	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	1045					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CATCGAGGAGGAGAACAAGCT	0.577													28	76					0	0	1	0	0
PCMTD2	55251	broad.mit.edu	37	20	62904588	62904588	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:62904588C>T	uc002yil.3	+	6	921	c.721C>T	c.(721-723)CGC>TGC	p.R241C	PCMTD2_uc002yim.3_Missense_Mutation_p.R214C	NM_018257	NP_060727	Q9NV79	PCMD2_HUMAN	protein-L-isoaspartate (D-aspartate)	241						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					AGTGGCAGTTCGCAGCCTCCA	0.507													18	69					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10906962	10906962	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10906962C>T	uc002yip.1	-	24	1967	c.1599G>A	c.(1597-1599)GTG>GTA	p.V533V	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.V515V|TPTE_uc002yir.1_Silent_p.V495V|TPTE_uc010gkv.1_Silent_p.V395V	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	533	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AAAGTATCTCCACGGCAAAAT	0.353													7	82					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10910355	10910355	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10910355G>A	uc002yip.1	-	22	1769	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.F449F|TPTE_uc002yir.1_Silent_p.F429F|TPTE_uc010gkv.1_Silent_p.F329F	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	467	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTAGACCGTCGAATACATCAA	0.338													19	132					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10914373	10914373	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10914373C>T	uc002yip.1	-	21	1714	c.1346G>A	c.(1345-1347)GGA>GAA	p.G449E	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G431E|TPTE_uc002yir.1_Missense_Mutation_p.G411E|TPTE_uc010gkv.1_Missense_Mutation_p.G311E	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	449	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CGAACATTTTCCTAATGAAAT	0.318													6	55					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10933857	10933857	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10933857C>T	uc002yip.1	-	17	1390	c.1022G>A	c.(1021-1023)GGC>GAC	p.G341D	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G323D|TPTE_uc002yir.1_Missense_Mutation_p.G303D|TPTE_uc010gkv.1_Missense_Mutation_p.G203D	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	341	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATTACCTGTGCCTCCTTTACA	0.328													23	281					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10941926	10941926	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10941926G>A	uc002yip.1	-	14	1145	c.777C>T	c.(775-777)TTC>TTT	p.F259F	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.F241F|TPTE_uc002yir.1_Silent_p.F221F|TPTE_uc010gkv.1_Silent_p.F121F	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	259	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GATTTCTATAGAAAGACTGCC	0.313													34	258					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10942755	10942755	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10942755C>T	uc002yip.1	-	13	1054	c.686G>A	c.(685-687)CGA>CAA	p.R229Q	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.R211Q|TPTE_uc002yir.1_Missense_Mutation_p.R191Q|TPTE_uc010gkv.1_Missense_Mutation_p.R91Q	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	229	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CCTTGTGTATCGCCTTTTGTT	0.323													65	441					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10942968	10942968	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10942968G>A	uc002yip.1	-	12	987	c.619C>T	c.(619-621)CAT>TAT	p.H207Y	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.H189Y|TPTE_uc002yir.1_Missense_Mutation_p.H169Y|TPTE_uc010gkv.1_Missense_Mutation_p.H69Y	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	207					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGAAACAGATGAAAAATTCTT	0.308													7	74					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10971322	10971322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10971322C>T	uc002yip.1	-	5	403	c.35G>A	c.(34-36)GGA>GAA	p.G12E	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G12E|TPTE_uc002yir.1_Missense_Mutation_p.G12E|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	12					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AATGATGACTCCCGCCAGGTC	0.333													10	62					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10996112	10996112	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10996112C>T	uc002yis.1	-	12		c.2074G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGTTCGACTTCTTTGCCGCAC	0.398													22	132					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10998243	10998243	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10998243C>T	uc002yis.1	-	11		c.2010G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTTTGACACCATCTGTTCCT	0.378													13	191					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10998270	10998270	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:10998270C>T	uc002yis.1	-	11		c.1983G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CCCTTAGTTTCATCATTCACA	0.388													34	190					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11058235	11058235	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:11058235C>T	uc002yit.1	-	3	413	c.205G>A	c.(205-207)GAG>AAG	p.E69K	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GGTGTCGGCTCCTGCAGCACA	0.428													12	134					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14424275	14424275	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:14424275G>A	uc002yiy.3	+	5		c.3090G>A			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						ATTCAAGAGGGGGGAAGAtta	0.224													3	14					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14437579	14437579	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:14437579G>A	uc002yja.3	+	9		c.2249G>A				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						CTGTGggccaggcgccatggc	0.184													8	39					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299													6	55					0	0	1	0	0
POTED	317754	broad.mit.edu	37	21	14982958	14982958	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:14982958C>T	uc002yjb.1	+	1	461	c.409C>T	c.(409-411)CGA>TGA	p.R137*		NM_174981	NP_778146	Q86YR6	POTED_HUMAN	pote protein	137						plasma membrane				ovary(3)|skin(3)	6						CCACATCCGTCGAGAAGATCT	0.587													7	56					0	0	1	0	0
POTED	317754	broad.mit.edu	37	21	15013746	15013746	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:15013746G>A	uc002yjb.1	+	11	1666	c.1614G>A	c.(1612-1614)CTG>CTA	p.L538L		NM_174981	NP_778146	Q86YR6	POTED_HUMAN	pote protein	538	Potential.					plasma membrane				ovary(3)|skin(3)	6						TGCTAAGACTGGAACTAGATG	0.363													25	26					0	0	1	0	0
C21orf81	391267	broad.mit.edu	37	21	15352085	15352085	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:15352085C>T	uc002yji.2	-	1		c.681G>A			C21orf81_uc002yjj.3_RNA	NR_027270				Homo sapiens C21orf81 protein (C21orf81) mRNA, complete cds.												0						GCTCCATCTCCGCGGCGTCGC	0.667													5	29					0	0	1	0	0
LIPI	149998	broad.mit.edu	37	21	15561637	15561637	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:15561637C>T	uc002yjm.2	-	2	223	c.213G>A	c.(211-213)AGG>AGA	p.R71R	LIPI_uc010gkw.1_Silent_p.R4R	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	50					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		TTAGGTTGTTCCTTGTATACA	0.353													29	101					0	0	1	0	0
RBM11	54033	broad.mit.edu	37	21	15599286	15599286	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:15599286C>T	uc002yjo.3	+	5	560	c.518C>T	c.(517-519)TCA>TTA	p.S173L	RBM11_uc002yjn.3_Missense_Mutation_p.S59L|RBM11_uc002yjp.3_Missense_Mutation_p.S59L	NM_144770	NP_658983	P57052	RBM11_HUMAN	RNA binding motif protein 11	173							nucleotide binding|RNA binding				0				Epithelial(23;0.000314)|COAD - Colon adenocarcinoma(22;0.00242)|Colorectal(24;0.0129)|Lung(58;0.141)		GTGTCTTCCTCACTGAATCAT	0.453													33	269					0	0	1	0	0
HSPA13	6782	broad.mit.edu	37	21	15753742	15753742	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:15753742G>A	uc002yjt.2	-	2	217	c.148C>T	c.(148-150)CCT>TCT	p.P50S	HSPA13_uc011abx.1_5'UTR	NM_006948	NP_008879	P48723	HSP13_HUMAN	heat shock protein 70kDa family member 13	50						endoplasmic reticulum|microsome	ATP binding			kidney(1)	1						CCTGTGCCAGGAAAAAACACC	0.423													25	58					0	0	1	0	0
SAMSN1	64092	broad.mit.edu	37	21	15858288	15858288	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:15858288G>A	uc002yju.1	-	8	1149	c.1067C>T	c.(1066-1068)TCT>TTT	p.S356F	SAMSN1_uc010gky.1_Missense_Mutation_p.S188F|SAMSN1_uc002yjv.1_Missense_Mutation_p.S424F	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	356					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		CAGATTTTCAGACTCCAGATC	0.393													30	140					0	0	1	0	0
NRIP1	8204	broad.mit.edu	37	21	16339673	16339673	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:16339673G>A	uc002yjx.2	-	4	1439	c.841C>T	c.(841-843)CGA>TGA	p.R281*		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	281	Repression domain 1.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		GCGTGTTCTCGAGAATACTGC	0.458													33	101					0	0	1	0	0
NRIP1	8204	broad.mit.edu	37	21	16339859	16339859	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:16339859G>A	uc002yjx.2	-	4	1253	c.655C>T	c.(655-657)CCT>TCT	p.P219S		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	219	Repression domain 1.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		ACATGATGAGGAGACTCTGCA	0.403													32	111					0	0	1	0	0
USP25	29761	broad.mit.edu	37	21	17138385	17138385	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:17138385G>A	uc002yjy.1	+	3	410	c.193G>A	c.(193-195)GAG>AAG	p.E65K	USP25_uc011aby.1_Missense_Mutation_p.E65K|USP25_uc002yjz.1_Missense_Mutation_p.E65K|USP25_uc010gla.1_Missense_Mutation_p.E65K	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	65					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		CCCTCAGCAGGAGGAGACAAC	0.398													7	92					0	0	1	0	0
USP25	29761	broad.mit.edu	37	21	17197380	17197380	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:17197380G>A	uc002yjy.1	+	12	1521	c.1304G>A	c.(1303-1305)AGA>AAA	p.R435K	USP25_uc011aby.1_Missense_Mutation_p.R435K|USP25_uc002yjz.1_Missense_Mutation_p.R435K|USP25_uc010gla.1_Intron	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	435					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		AGGCTAGAAAGGTATTTTAAC	0.294													7	51					0	0	1	0	0
USP25	29761	broad.mit.edu	37	21	17246733	17246733	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:17246733C>T	uc002yjy.1	+	22	2904	c.2687C>T	c.(2686-2688)TCC>TTC	p.S896F	USP25_uc011aby.1_Missense_Mutation_p.S966F|USP25_uc002yjz.1_Missense_Mutation_p.S928F|USP25_uc010gla.1_Missense_Mutation_p.S291F	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	896					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		TATATAGATTCCTTGCTGTTC	0.284													26	51					0	0	1	0	0
USP25	29761	broad.mit.edu	37	21	17250265	17250265	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:17250265G>A	uc002yjy.1	+	23	3167	c.2950G>A	c.(2950-2952)GAT>AAT	p.D984N	USP25_uc011aby.1_Missense_Mutation_p.D1054N|USP25_uc002yjz.1_Missense_Mutation_p.D1016N|USP25_uc010gla.1_Missense_Mutation_p.D379N	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	984					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		AGCTGTAGAAGATATGAGAAA	0.363													13	59					0	0	1	0	0
MIRLET7C	406885	broad.mit.edu	37	21	17912223	17912223	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:17912223C>T	hsa-let-7c|MI0000064	+			c.76C>T			C21orf34_uc002ykb.2_Intron|C21orf34_uc010glc.2_Intron|C21orf34_uc002ykc.2_Intron|uc002yke.2_RNA																	0						TTCTAGCTTTCCTTGGAGCAC	0.438													15	70					0	0	1	0	0
CHODL	140578	broad.mit.edu	37	21	19638318	19638318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:19638318C>T	uc002ykv.2	+	6	1176	c.785C>T	c.(784-786)TCA>TTA	p.S262L	CHODL_uc002ykr.2_Missense_Mutation_p.S221L|CHODL_uc002yks.2_Missense_Mutation_p.S221L|CHODL_uc002ykt.2_Nonsense_Mutation_p.Q187*|CHODL_uc002yku.2_Nonsense_Mutation_p.Q187*	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	262	Cytoplasmic (Potential).				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		CTGTGGATTTCAAAGAGTACC	0.323													27	62					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19701585	19701585	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:19701585C>T	uc002ykw.2	-	15	1712	c.1681G>A	c.(1681-1683)GGA>AGA	p.G561R		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	561	Extracellular (Potential).|CUB 2.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						ATATTCTTTCCTTTTTGTGCA	0.308													13	39					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19713778	19713778	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:19713778G>A	uc002ykw.2	-	13	1547	c.1516C>T	c.(1516-1518)CTT>TTT	p.L506F		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	506	Extracellular (Potential).				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						TCTGGATAAAGACTCCCATTG	0.358													37	101					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19725294	19725294	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:19725294C>T	uc002ykw.2	-	10	1128	c.1097G>A	c.(1096-1098)TGG>TAG	p.W366*		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	366	Extracellular (Potential).|MAM.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						AATCCTTTCCCATTCATTATC	0.348													40	152					0	0	1	0	0
NCAM2	4685	broad.mit.edu	37	21	22790820	22790820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:22790820G>A	uc002yld.1	+	11	1660	c.1411G>A	c.(1411-1413)GGA>AGA	p.G471R	NCAM2_uc011acb.1_Missense_Mutation_p.G329R	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	471	Ig-like C2-type 5.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		CAATGACTTTGGACGCTATAA	0.318													19	162					0	0	1	0	0
MIR155HG	114614	broad.mit.edu	37	21	26946395	26946395	+	RNA	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:26946395T>C	uc002ylm.3	+	3		c.389T>C				NR_001458				Homo sapiens BIC noncoding mRNA, complete sequence.												0						TGGAACAAATTGCTGCCGTGG	0.398													3	16					0	0	1	0	0
APP	351	broad.mit.edu	37	21	27284094	27284094	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:27284094G>A	uc002ylz.2	-	14	2068	c.1868C>T	c.(1867-1869)TCT>TTT	p.S623F	APP_uc011acg.1_Missense_Mutation_p.S131F|APP_uc010glk.2_Missense_Mutation_p.S599F|APP_uc002yma.2_Missense_Mutation_p.S604F|APP_uc011ach.1_Missense_Mutation_p.S567F|APP_uc002ymb.2_Missense_Mutation_p.S548F|APP_uc010glj.2_Missense_Mutation_p.S492F|APP_uc011aci.1_Missense_Mutation_p.S513F	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	623	Extracellular (Potential).				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				AGCCCCAAAAGAATGCCACGG	0.522													6	45					0	0	1	0	0
CYYR1	116159	broad.mit.edu	37	21	27938585	27938585	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:27938585G>A	uc002ymd.2	-	2	498	c.176C>T	c.(175-177)TCG>TTG	p.S59L	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Missense_Mutation_p.S59L	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	59	Extracellular (Potential).					integral to membrane					0						GAATACTCACGAGAGGATATT	0.433													10	32					0	0	1	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28304412	28304412	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:28304412G>A	uc002ymg.2	-	6	2689	c.1960C>T	c.(1960-1962)CCC>TCC	p.P654S		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	654	Cys-rich.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						GCATATTTGGGAACCCATTCC	0.448													46	24					0	0	1	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28305321	28305321	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:28305321G>A	uc002ymg.2	-	5	2461	c.1732C>T	c.(1732-1734)CAG>TAG	p.Q578*		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	578	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						CGAGAACACTGGCCCCAGGAT	0.483													9	30					0	0	1	0	0
RNF160	26046	broad.mit.edu	37	21	30307468	30307468	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:30307468G>A	uc002ymr.2	-	27	4989	c.4976C>T	c.(4975-4977)TCT>TTT	p.S1659F		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	1613							ligase activity|zinc ion binding				0						TGTTTGTACAGAAGATATTTC	0.343													26	62					0	0	1	0	0
RNF160	26046	broad.mit.edu	37	21	30316198	30316198	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:30316198G>A	uc002ymr.2	-	23	4162	c.4149C>T	c.(4147-4149)TCC>TCT	p.S1383S		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	1337							ligase activity|zinc ion binding				0						CATTCTGAAAGGATGTTTCAG	0.358													43	112					0	0	1	0	0
RNF160	26046	broad.mit.edu	37	21	30365209	30365209	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:30365209G>A	uc002ymr.2	-	1	69	c.56C>T	c.(55-57)TCT>TTT	p.S19F		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	Error:Variant_position_missing_in_O94822_after_alignment							ligase activity|zinc ion binding				0						GGCGGCGGAAGAGGACACCCT	0.632													6	9					0	0	1	0	0
GRIK1	2897	broad.mit.edu	37	21	30971164	30971164	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:30971164C>T	uc002yno.1	-	8	1656	c.1192G>A	c.(1192-1194)GAA>AAA	p.E398K	GRIK1_uc002ynn.2_Missense_Mutation_p.E398K|GRIK1_uc011acs.1_Missense_Mutation_p.E398K|GRIK1_uc011act.1_Missense_Mutation_p.E342K|GRIK1_uc010glq.1_Missense_Mutation_p.E256K|GRIK1_uc002ynr.2_Missense_Mutation_p.E398K|uc002ynp.1_Intron	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	398	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TCAGTTCCTTCCTCTTTGAGA	0.368													32	84					0	0	1	0	0
GRIK1	2897	broad.mit.edu	37	21	31062105	31062105	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31062105C>T	uc002yno.1	-	3	951	c.487G>A	c.(487-489)GAT>AAT	p.D163N	GRIK1_uc002ynn.2_Missense_Mutation_p.D163N|GRIK1_uc011acs.1_Missense_Mutation_p.D163N|GRIK1_uc011act.1_Missense_Mutation_p.D107N|GRIK1_uc010glq.1_Intron|GRIK1_uc002ynr.2_Missense_Mutation_p.D163N	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	163	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	AGGACCAGATCCAGGATCGCC	0.488													29	221					0	0	1	0	0
GRIK1	2897	broad.mit.edu	37	21	31066223	31066223	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31066223G>A	uc002yno.1	-	2	742	c.278C>T	c.(277-279)TCG>TTG	p.S93L	GRIK1_uc002ynn.2_Missense_Mutation_p.S93L|GRIK1_uc011acs.1_Missense_Mutation_p.S93L|GRIK1_uc011act.1_Intron|GRIK1_uc010glq.1_Intron|GRIK1_uc002ynr.2_Missense_Mutation_p.S93L	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	93	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	ACCTCTCCGCGAGGCTTCAAA	0.423													46	100					0	0	1	0	0
CLDN17	26285	broad.mit.edu	37	21	31538872	31538872	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31538872G>A	uc011acv.1	-	1	64	c.64C>T	c.(64-66)CTT>TTT	p.L22F		NM_012131	NP_036263	P56750	CLD17_HUMAN	claudin 17	22	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	Golgi apparatus|integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(2)	2						GTTGTGGCAAGAGTCCCCACC	0.483													24	66					0	0	1	0	0
CLDN8	9073	broad.mit.edu	37	21	31587956	31587956	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31587956C>T	uc002ynu.1	-	1	363	c.288G>A	c.(286-288)ATG>ATA	p.M96I		NM_199328	NP_955360	P56748	CLD8_HUMAN	claudin 8	96	Helical; (Potential).				calcium-independent cell-cell adhesion	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GGATGGCCATCATGAAAGCCA	0.522													17	49					0	0	1	0	0
CLDN8	9073	broad.mit.edu	37	21	31588018	31588019	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31588018_31588019CC>TT	uc002ynu.1	-	1	300_301	c.225_226GG>AA	c.(223-228)CCGGAC>CCAAAC	p.D76N		NM_199328	NP_955360	P56748	CLD8_HUMAN	claudin 8	76	Extracellular (Potential).				calcium-independent cell-cell adhesion	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GCCTGTAGGTCCGGAGAAAGAG	0.51													33	72					0	0	1	0	0
KRTAP24-1	643803	broad.mit.edu	37	21	31654819	31654819	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31654819G>A	uc002ynv.2	-	1	458	c.432C>T	c.(430-432)ACC>ACT	p.T144T		NM_001085455	NP_001078924	Q3LI83	KR241_HUMAN	keratin associated protein 24-1	144						keratin filament	structural molecule activity				0						CGTTGCGGAGGGTTTGGCAGG	0.353													36	122					0	0	1	0	0
KRTAP26-1	388818	broad.mit.edu	37	21	31692252	31692252	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31692252C>T	uc002ynw.2	-	1	356	c.102G>A	c.(100-102)GTG>GTA	p.V34V		NM_203405	NP_981950	Q6PEX3	KR261_HUMAN	keratin associated protein 26-1	34						intermediate filament				ovary(1)	1						CTCCACAGCTCACGCTGGTAG	0.557													38	91					0	0	1	0	0
KRTAP15-1	254950	broad.mit.edu	37	21	31813035	31813035	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31813035G>A	uc002yod.2	+	1	390	c.390G>A	c.(388-390)AGG>AGA	p.R130R		NM_181623	NP_853654	Q3LI76	KR151_HUMAN	keratin associated protein 15-1	130						intermediate filament					0						TTTCATCCAGGAATTTCCAGG	0.453													44	119					0	0	1	0	0
KRTAP19-3	337970	broad.mit.edu	37	21	31864206	31864206	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31864206C>T	uc002yog.1	-	1	70	c.70G>A	c.(70-72)GGC>AGC	p.G24S		NM_181609	NP_853640	Q7Z4W3	KR193_HUMAN	keratin associated protein 19-3	24						intermediate filament					0						CAGCCATAGCCATAGCCCAGG	0.572													81	225					0	0	1	0	0
KRTAP19-5	337972	broad.mit.edu	37	21	31874201	31874201	+	Missense_Mutation	SNP	C	T	T	rs73186218	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31874201C>T	uc011ada.1	-	1	208	c.208G>A	c.(208-210)GGA>AGA	p.G70R		NM_181611	NP_853642	Q3LI72	KR195_HUMAN	keratin associated protein 19-5	70						intermediate filament	protein binding				0						CAATAAAATCCAGAGAATCCA	0.502													41	124					0	0	1	0	0
KRTAP6-2	337967	broad.mit.edu	37	21	31971122	31971122	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:31971122G>A	uc011adc.1	-	1	72	c.72C>T	c.(70-72)GGC>GGT	p.G24G	KRTAP22-1_uc011add.1_5'Flank	NM_181604	NP_853635	Q3LI66	KRA62_HUMAN	keratin associated protein 6-2	24						intermediate filament					0						CATAGCCATAGCCTAGGCCTT	0.572													32	70					0	0	1	0	0
KRTAP11-1	337880	broad.mit.edu	37	21	32253688	32253688	+	Silent	SNP	G	A	A	rs143748718		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32253688G>A	uc002yov.2	-	1	187	c.156C>T	c.(154-156)CTC>CTT	p.L52L		NM_175858	NP_787054	Q8IUC1	KR111_HUMAN	keratin associated protein 11-1	52						keratin filament	structural molecule activity			pancreas(1)	1						AGTGGTCCAGGAGCCAAGAGC	0.572													16	53					0	0	1	0	0
KRTAP19-8	728299	broad.mit.edu	37	21	32410599	32410599	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32410599C>T	uc010glt.2	-	1	197	c.164G>A	c.(163-165)GGA>GAA	p.G55E		NM_001099219	NP_001092689	Q3LI54	KR198_HUMAN	keratin associated protein 19-8	55						intermediate filament				upper_aerodigestive_tract(1)	1						TCCATATCCTCCGTAGTATAA	0.478													48	151					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32525063	32525063	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32525063C>T	uc002yow.1	-	20	3729	c.3257G>A	c.(3256-3258)GGA>GAA	p.G1086E	TIAM1_uc011adk.1_Missense_Mutation_p.G1086E|TIAM1_uc011adl.1_Missense_Mutation_p.G1026E	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1086	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						CGTTAAATTTCCAAAAAGCAC	0.333													15	46					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32526597	32526597	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32526597C>T	uc002yow.1	-	18	3611	c.3139G>A	c.(3139-3141)GAG>AAG	p.E1047K	TIAM1_uc011adk.1_Missense_Mutation_p.E1047K|TIAM1_uc011adl.1_Missense_Mutation_p.E987K	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1047	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TCCAGGAGCTCGCAGATCACC	0.582													30	18					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32526727	32526728	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32526727_32526728GG>AA	uc002yow.1	-	18	3480_3481	c.3008_3009CC>TT	c.(3007-3009)GCC>GTT	p.A1003V	TIAM1_uc011adk.1_Missense_Mutation_p.A1003V|TIAM1_uc011adl.1_Missense_Mutation_p.A943V	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1003					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GGCAAAATGCGGCCACCTGTTC	0.584													27	69					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32554771	32554771	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32554771C>T	uc002yow.1	-	16	3326	c.2854G>A	c.(2854-2856)GAG>AAG	p.E952K	TIAM1_uc011adk.1_Missense_Mutation_p.E952K|TIAM1_uc011adl.1_Missense_Mutation_p.E892K	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	952					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						AGGGGGCTCTCGCCAAGGTCG	0.662													8	15					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32567576	32567576	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32567576G>A	uc002yow.1	-	14	3011	c.2539C>T	c.(2539-2541)CAC>TAC	p.H847Y	TIAM1_uc011adk.1_Missense_Mutation_p.H847Y|TIAM1_uc011adl.1_Missense_Mutation_p.H787Y	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	847	PDZ.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity	p.H847Y(1)		lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TTCTCAATGTGGATGCTCTGA	0.303													14	53					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32595760	32595760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32595760G>A	uc002yow.1	-	9	2429	c.1957C>T	c.(1957-1959)CGC>TGC	p.R653C	TIAM1_uc011adk.1_Missense_Mutation_p.R653C|TIAM1_uc011adl.1_Missense_Mutation_p.R653C|TIAM1_uc002yox.1_Missense_Mutation_p.R261C	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	653					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ATTCCAAGGCGGCCCATGGCC	0.483													35	76					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32595859	32595859	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32595859G>A	uc002yow.1	-	9	2330	c.1858C>T	c.(1858-1860)CGT>TGT	p.R620C	TIAM1_uc011adk.1_Missense_Mutation_p.R620C|TIAM1_uc011adl.1_Missense_Mutation_p.R620C|TIAM1_uc002yox.1_Missense_Mutation_p.R228C	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	620					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						CAGCGGAAACGAAACAGGTCC	0.478													27	76					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32624481	32624481	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:32624481C>T	uc002yow.1	-	6	1460	c.988G>A	c.(988-990)GAG>AAG	p.E330K	TIAM1_uc011adk.1_Missense_Mutation_p.E330K|TIAM1_uc011adl.1_Missense_Mutation_p.E330K|TIAM1_uc002yox.1_5'UTR	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	330					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TCTGCAAACTCACTGCCCTCG	0.572													74	233					0	0	1	0	0
HUNK	30811	broad.mit.edu	37	21	33318442	33318442	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:33318442C>T	uc002yph.2	+	4	1065	c.705C>T	c.(703-705)CTC>CTT	p.L235L		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase	235	Protein kinase.				multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						CTGAACTGCTCGCCAGGAAGA	0.542													7	84					0	0	1	0	0
MRAP	56246	broad.mit.edu	37	21	33684082	33684082	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:33684082G>A	uc002ypj.2	+	5	481	c.294G>A	c.(292-294)AGG>AGA	p.R98R	MRAP_uc002ypk.2_Intron|URB1_uc002ypn.2_3'UTR|MRAP_uc011ado.1_Silent_p.R39R|MRAP_uc002ypl.2_Silent_p.R98R	NM_178817	NP_848932	Q8TCY5	MRAP_HUMAN	melanocortin 2 receptor accessory protein	98	Extracellular (Potential).				positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|integral to membrane|perinuclear region of cytoplasm|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding				0						CGTGCCACAGGGAACCCCTGG	0.632													41	63					0	0	1	0	0
MRAP	56246	broad.mit.edu	37	21	33684189	33684189	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:33684189G>A	uc002ypj.2	+	5	588	c.401G>A	c.(400-402)GGG>GAG	p.G134E	MRAP_uc002ypk.2_Intron|URB1_uc002ypn.2_3'UTR|MRAP_uc011ado.1_Missense_Mutation_p.G75E|MRAP_uc002ypl.2_Missense_Mutation_p.G134E	NM_178817	NP_848932	Q8TCY5	MRAP_HUMAN	melanocortin 2 receptor accessory protein	134	Extracellular (Potential).				positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|integral to membrane|perinuclear region of cytoplasm|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding				0						TTGCCCCTCGGGGGTTTCCAG	0.662													21	44					0	0	1	0	0
TCP10L	140290	broad.mit.edu	37	21	33956525	33956525	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:33956525C>T	uc002ypw.3	-	2	206	c.90G>A	c.(88-90)AAG>AAA	p.K30K	C21orf59_uc002ypx.1_Intron|C21orf59_uc002ypy.1_Intron|C21orf59_uc002ypz.1_Intron	NM_144659	NP_653260	Q9NV44	CU077_HUMAN	T-complex 10A-2	Error:Variant_position_missing_in_Q9NV44_after_alignment											0						CCACAGCTGTCTTCTCCATGA	0.632													29	65					0	0	1	0	0
SYNJ1	8867	broad.mit.edu	37	21	34018827	34018827	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:34018827G>A	uc002yqh.2	-	24	3240	c.3240C>T	c.(3238-3240)TCC>TCT	p.S1080S	SYNJ1_uc011ads.1_Silent_p.S1036S|SYNJ1_uc002yqf.2_Silent_p.S1041S|SYNJ1_uc002yqg.2_Silent_p.S1036S|SYNJ1_uc002yqi.2_Silent_p.S1080S	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	1041	Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						AAGAGCTGGGGGAAGTACCAA	0.522													6	106					0	0	1	0	0
SYNJ1	8867	broad.mit.edu	37	21	34038258	34038258	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:34038258G>A	uc002yqh.2	-	17	2257	c.2257C>T	c.(2257-2259)CCT>TCT	p.P753S	SYNJ1_uc011ads.1_Missense_Mutation_p.P709S|SYNJ1_uc002yqf.2_Missense_Mutation_p.P714S|SYNJ1_uc002yqg.2_Missense_Mutation_p.P709S|SYNJ1_uc002yqi.2_Missense_Mutation_p.P753S	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	714	Catalytic (Potential).						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						CTTACCATAGGAAAACTCAAT	0.348													14	44					0	0	1	0	0
SYNJ1	8867	broad.mit.edu	37	21	34051053	34051053	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:34051053G>A	uc002yqh.2	-	12	1529	c.1529C>T	c.(1528-1530)TCC>TTC	p.S510F	SYNJ1_uc011ads.1_Missense_Mutation_p.S474F|SYNJ1_uc002yqf.2_Missense_Mutation_p.S471F|SYNJ1_uc002yqg.2_Missense_Mutation_p.S474F|SYNJ1_uc002yqi.2_Missense_Mutation_p.S510F	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	471							inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						CTCTTGCTTGGAGCTGTCAAA	0.408													21	94					0	0	1	0	0
GCFC1	94104	broad.mit.edu	37	21	34123226	34123226	+	Splice_Site	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:34123226A>G	uc002yqn.2	-	10	1913	c.1723_splice	c.e10+1	p.D575_splice	GCFC1_uc002yql.2_Splice_Site_p.D84_splice|GCFC1_uc002yqm.2_Splice_Site_p.D69_splice|GCFC1_uc002yqo.2_Splice_Site|GCFC1_uc002yqp.2_Splice_Site_p.D575_splice	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate							cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TAAATGTCTAACCTTTTTCCA	0.358													31	58					0	0	1	0	0
ITSN1	6453	broad.mit.edu	37	21	35183432	35183432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:35183432C>T	uc002yta.1	+	21	2741	c.2473C>T	c.(2473-2475)CCC>TCC	p.P825S	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Missense_Mutation_p.P820S|ITSN1_uc010gmg.2_Missense_Mutation_p.P783S|ITSN1_uc010gmh.2_RNA|ITSN1_uc002ysw.2_Missense_Mutation_p.P825S|ITSN1_uc010gmi.2_Missense_Mutation_p.P788S|ITSN1_uc010gmj.2_Missense_Mutation_p.P704S|ITSN1_uc002ysy.2_Missense_Mutation_p.P820S|ITSN1_uc002ysx.2_Missense_Mutation_p.P783S|ITSN1_uc002ytb.1_Missense_Mutation_p.P820S|ITSN1_uc002ytc.1_Missense_Mutation_p.P820S|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Missense_Mutation_p.P788S|ITSN1_uc010gml.2_RNA|ITSN1_uc002ytj.2_Missense_Mutation_p.P820S|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Missense_Mutation_p.P759S|ITSN1_uc002ytf.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	825					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						TGCCCCTGCCCCCAAACTGGC	0.552													23	105					0	0	1	0	0
ITSN1	6453	broad.mit.edu	37	21	35247748	35247748	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:35247748G>A	uc002yta.1	+	34	4532	c.4264G>A	c.(4264-4266)GAA>AAA	p.E1422K	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Missense_Mutation_p.E1417K|ITSN1_uc002ytj.2_Intron|ITSN1_uc010gmm.1_RNA|ITSN1_uc010gmn.1_RNA|ITSN1_uc002ytk.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1422	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						CCAGGTGAACGAAGGGGTGCG	0.607													37	93					0	0	1	0	0
SLC5A3	6526	broad.mit.edu	37	21	35467931	35467931	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:35467931C>T	uc002yto.2	+	2	946	c.434C>T	c.(433-435)TCG>TTG	p.S145L	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	145	Cytoplasmic (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						GATCTGTATTCGGGTGCCCTT	0.468													49	238					0	0	1	0	0
SLC5A3	6526	broad.mit.edu	37	21	35469468	35469468	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:35469468C>T	uc002yto.2	+	2	2483	c.1971C>T	c.(1969-1971)TTC>TTT	p.F657F	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	657	Extracellular (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						ACTGGAAGTTCATAGACTGGT	0.463													11	135					0	0	1	0	0
KCNE1	3753	broad.mit.edu	37	21	35821901	35821901	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:35821901G>A	uc010gmp.2	-	2	462	c.32C>T	c.(31-33)CCC>CTC	p.P11L	KCNE1_uc002ytz.2_Missense_Mutation_p.P11L|KCNE1_uc010gmq.2_Missense_Mutation_p.P11L|KCNE1_uc010gmr.2_Missense_Mutation_p.P11L|KCNE1_uc010gms.2_Missense_Mutation_p.P11L|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	11					blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	GGTCAGAAAGGGCGTCACCGC	0.587													13	39					0	0	1	0	0
CLIC6	54102	broad.mit.edu	37	21	36081686	36081686	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:36081686G>A	uc010gmt.1	+	6	1803	c.1803G>A	c.(1801-1803)AGG>AGA	p.R601R	CLIC6_uc002yuf.1_Silent_p.R583R	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	601	GST C-terminal.					chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						AGGCCCTGAGGAAGCTGGATA	0.453													28	75					0	0	1	0	0
SETD4	54093	broad.mit.edu	37	21	37412927	37412927	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37412927G>A	uc002yuw.1	-	8	2383	c.1010C>T	c.(1009-1011)CCA>CTA	p.P337L	SETD4_uc002yux.1_Missense_Mutation_p.P313L|SETD4_uc002yuu.2_RNA|SETD4_uc002yuv.2_Missense_Mutation_p.P337L	NM_017438	NP_059134	Q9NVD3	SETD4_HUMAN	SET domain containing 4 isoform a	337				EILVKYLPSTDKQMDKKISILKDHGYIENLTFGWDGPSWRL LTALKLLCLEAEKFTCWKKVLLGEVISDTNEKTSLDIAQKI CYYFIEETNAVLQKVSHMKDEKEALINQLTLVESLWTEELK ILRASAETLHSLQTAFT -> GWNQLCS (in Ref. 5; AAH02898).						large_intestine(1)|ovary(1)	2						CCTCCAAGATGGTCCATCCCA	0.383													64	181					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37584296	37584296	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37584296C>T	uc002yvg.2	+	7	884	c.805C>T	c.(805-807)CTC>TTC	p.L269F	DOPEY2_uc011aeb.1_Missense_Mutation_p.L269F	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	269					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						AGCCATCCCCCTCCTCAGATC	0.502													25	85					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37603235	37603235	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37603235C>T	uc002yvg.2	+	14	2232	c.2153C>T	c.(2152-2154)TCG>TTG	p.S718L	DOPEY2_uc011aeb.1_Missense_Mutation_p.S718L	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	718					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CCATCGTCTTCGCCCAGCAGC	0.552													20	44					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37617990	37617990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37617990C>T	uc002yvg.2	+	19	3791	c.3712C>T	c.(3712-3714)CGG>TGG	p.R1238W	DOPEY2_uc011aeb.1_Missense_Mutation_p.R1187W|DOPEY2_uc002yvh.2_Missense_Mutation_p.R89W	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1238					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CTACGACTCTCGGCGGGTCCT	0.582													19	38					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37650510	37650510	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37650510C>T	uc002yvg.2	+	30	5905	c.5826C>T	c.(5824-5826)GCC>GCT	p.A1942A	DOPEY2_uc011aeb.1_Silent_p.A1891A	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1942					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CACTCAGTGCCTACAATGCTC	0.522													23	120					0	0	1	0	0
MORC3	23515	broad.mit.edu	37	21	37710234	37710234	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37710234C>T	uc002yvi.2	+	4	526	c.450C>T	c.(448-450)TTC>TTT	p.F150F		NM_015358	NP_056173	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	150					cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			ovary(2)	2						TAGTGGCATTCAACAAGCACC	0.378													53	116					0	0	1	0	0
MORC3	23515	broad.mit.edu	37	21	37741779	37741779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37741779C>T	uc002yvi.2	+	15	2189	c.2113C>T	c.(2113-2115)CTT>TTT	p.L705F		NM_015358	NP_056173	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	705	Potential.				cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			ovary(2)	2						CCAGCTACTCCTTGTCACTGA	0.378													25	76					0	0	1	0	0
CHAF1B	8208	broad.mit.edu	37	21	37788600	37788600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37788600C>T	uc002yvj.2	+	14	1754	c.1616C>T	c.(1615-1617)CCC>CTC	p.P539L		NM_005441	NP_005432	Q13112	CAF1B_HUMAN	chromatin assembly factor 1 subunit B	539					cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|cytoplasm	chromatin binding|histone binding|unfolded protein binding			ovary(1)|skin(1)	2						CAGGGCAGTCCCCCAGAGCTA	0.517													10	30					0	0	1	0	0
CLDN14	23562	broad.mit.edu	37	21	37833526	37833526	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37833526C>T	uc002yvk.1	-	2	610	c.468G>A	c.(466-468)ATG>ATA	p.M156I	CLDN14_uc002yvn.1_Missense_Mutation_p.M156I|CLDN14_uc002yvo.1_Missense_Mutation_p.M156I|CLDN14_uc002yvl.1_Missense_Mutation_p.M156I|CLDN14_uc002yvm.1_Missense_Mutation_p.M156I	NM_012130	NP_036262	O95500	CLD14_HUMAN	claudin 14	156	Extracellular (Potential).				calcium-independent cell-cell adhesion|protein complex assembly|tight junction assembly	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TCTCAAACTTCATGCCGCTGG	0.622													28	64					0	0	1	0	0
CLDN14	23562	broad.mit.edu	37	21	37833570	37833570	+	Missense_Mutation	SNP	C	T	T	rs146755542	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:37833570C>T	uc002yvk.1	-	2	566	c.424G>A	c.(424-426)GAC>AAC	p.D142N	CLDN14_uc002yvn.1_Missense_Mutation_p.D142N|CLDN14_uc002yvo.1_Missense_Mutation_p.D142N|CLDN14_uc002yvl.1_Missense_Mutation_p.D142N|CLDN14_uc002yvm.1_Missense_Mutation_p.D142N	NM_012130	NP_036262	O95500	CLD14_HUMAN	claudin 14	142	Extracellular (Potential).				calcium-independent cell-cell adhesion|protein complex assembly|tight junction assembly	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGCACCACGTCGTTGGTGGTC	0.627													27	83					0	0	1	0	0
SIM2	6493	broad.mit.edu	37	21	38098611	38098611	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38098611G>A	uc002yvr.2	+	6	791	c.735G>A	c.(733-735)CTG>CTA	p.L245L	SIM2_uc002yvq.2_Silent_p.L245L	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	245	PAS 2.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						TGATATTCCTGGATTCCAGGT	0.562													9	21					0	0	1	0	0
DSCR6	53820	broad.mit.edu	37	21	38380522	38380522	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38380522C>T	uc002yvv.2	+	2	380	c.170C>T	c.(169-171)CCG>CTG	p.P57L	DSCR6_uc011aec.1_5'UTR|DSCR6_uc010gnd.2_5'UTR	NM_018962	NP_061835	P57055	DSCR6_HUMAN	Down syndrome critical region protein 6	57						nucleus				breast(1)	1		Myeloproliferative disorder(46;0.0632)				ACTGGAAGGCCGGTAAGGTTC	0.597													17	37					0	0	1	0	0
TTC3	7267	broad.mit.edu	37	21	38516844	38516844	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38516844C>T	uc002yvz.2	+	21	1897	c.1792C>T	c.(1792-1794)CAC>TAC	p.H598Y	TTC3_uc011aee.1_Missense_Mutation_p.H288Y|TTC3_uc002ywa.2_Missense_Mutation_p.H598Y|TTC3_uc002ywb.2_Missense_Mutation_p.H598Y|TTC3_uc010gnf.2_Missense_Mutation_p.H363Y|TTC3_uc002ywc.2_Missense_Mutation_p.H288Y|TTC3_uc011aed.1_Missense_Mutation_p.H288Y|TTC3_uc010gne.1_Missense_Mutation_p.H598Y	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	598	TPR 4.				protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				AGCTCTCAATCACTTTGAGAA	0.348													11	143					0	0	1	0	0
TTC3	7267	broad.mit.edu	37	21	38537884	38537884	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38537884C>T	uc002yvz.2	+	33	3473	c.3368C>T	c.(3367-3369)CCC>CTC	p.P1123L	TTC3_uc011aee.1_Missense_Mutation_p.P813L|TTC3_uc002ywa.2_Missense_Mutation_p.P1123L|TTC3_uc002ywb.2_Missense_Mutation_p.P1123L|TTC3_uc010gnf.2_Missense_Mutation_p.P888L|TTC3_uc002ywc.2_Missense_Mutation_p.P813L|TTC3_uc002ywd.1_Missense_Mutation_p.P187L	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1123					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GAACATGGTCCCTTGGACATG	0.338													79	170					0	0	1	0	0
TTC3	7267	broad.mit.edu	37	21	38538831	38538831	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38538831G>A	uc002yvz.2	+	33	4420	c.4315G>A	c.(4315-4317)GGA>AGA	p.G1439R	TTC3_uc011aee.1_Missense_Mutation_p.G1129R|TTC3_uc002ywa.2_Missense_Mutation_p.G1439R|TTC3_uc002ywb.2_Missense_Mutation_p.G1439R|TTC3_uc010gnf.2_Missense_Mutation_p.G1204R|TTC3_uc002ywc.2_Missense_Mutation_p.G1129R|TTC3_uc002ywd.1_Missense_Mutation_p.G503R	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1439					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				TGAGCACTGTGGAAATTCTAA	0.423													22	68					0	0	1	0	0
TTC3	7267	broad.mit.edu	37	21	38568232	38568232	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38568232A>T	uc002yvz.2	+	42	5579	c.5474A>T	c.(5473-5475)AAG>ATG	p.K1825M	TTC3_uc002ywa.2_Missense_Mutation_p.K1825M|TTC3_uc002ywb.2_Missense_Mutation_p.K1825M|TTC3_uc010gnf.2_Missense_Mutation_p.K1590M|TTC3_uc002ywc.2_Missense_Mutation_p.K1515M	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1825					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GCTGATCGGAAGCAGCCTGTT	0.572													19	30					0	0	1	0	0
DYRK1A	1859	broad.mit.edu	37	21	38877616	38877616	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38877616C>T	uc002ywk.2	+	9	1345	c.1270C>T	c.(1270-1272)CAT>TAT	p.H424Y	DYRK1A_uc002ywi.2_Missense_Mutation_p.H424Y|DYRK1A_uc002ywj.2_Missense_Mutation_p.H415Y|DYRK1A_uc002ywl.2_Missense_Mutation_p.H424Y|DYRK1A_uc002ywm.2_Missense_Mutation_p.H424Y|DYRK1A_uc011aei.1_Missense_Mutation_p.H185Y	NM_001396	NP_001387	Q13627	DYR1A_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	424	Protein kinase.				nervous system development|peptidyl-tyrosine phosphorylation|protein autophosphorylation	nuclear speck	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein self-association|protein serine/threonine kinase activity			ovary(2)|lung(1)|breast(1)	4						CCGTAAACTTCATAACATTCT	0.438													36	55					0	0	1	0	0
DYRK1A	1859	broad.mit.edu	37	21	38884476	38884476	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38884476C>T	uc002ywk.2	+	11	2009	c.1934C>T	c.(1933-1935)TCT>TTT	p.S645F	DYRK1A_uc002ywi.2_3'UTR|DYRK1A_uc002ywj.2_Missense_Mutation_p.S636F|DYRK1A_uc002ywl.2_3'UTR|DYRK1A_uc002ywm.2_3'UTR|DYRK1A_uc011aei.1_Missense_Mutation_p.S406F	NM_001396	NP_001387	Q13627	DYR1A_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	645					nervous system development|peptidyl-tyrosine phosphorylation|protein autophosphorylation	nuclear speck	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein self-association|protein serine/threonine kinase activity			ovary(2)|lung(1)|breast(1)	4						ACCCAAGATTCTATGGAGGTT	0.453													27	63					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	38997504	38997504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38997504C>T	uc011aej.1	-	4	1282	c.1229G>A	c.(1228-1230)AGA>AAA	p.R410K	KCNJ6_uc002ywo.2_Missense_Mutation_p.R410K	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	410	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	ATCACCATTTCTTTCTGTTTG	0.448													54	207					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	38997691	38997691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38997691C>T	uc011aej.1	-	4	1095	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	KCNJ6_uc002ywo.2_Missense_Mutation_p.E348K	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	348	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TAGTCAACTTCGTAGAACCCG	0.567													20	77					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	38997699	38997699	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:38997699C>T	uc011aej.1	-	4	1087	c.1034G>A	c.(1033-1035)GGG>GAG	p.G345E	KCNJ6_uc002ywo.2_Missense_Mutation_p.G345E	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	345	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TTCGTAGAACCCGTCCTCCAG	0.557													7	88					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	39086661	39086661	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39086661C>T	uc011aej.1	-	3	852	c.799G>A	c.(799-801)GGG>AGG	p.G267R	KCNJ6_uc002ywo.2_Missense_Mutation_p.G267R	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	267	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	CGGTCATCCCCCGTGTAATAC	0.507													46	98					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	39087296	39087296	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39087296C>T	uc011aej.1	-	3	217	c.164G>A	c.(163-165)AGG>AAG	p.R55K	KCNJ6_uc002ywo.2_Missense_Mutation_p.R55K	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	55	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	CCTCACGTACCTCTGGATTTT	0.522													35	121					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	39087397	39087397	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39087397G>A	uc011aej.1	-	3	116	c.63C>T	c.(61-63)GTC>GTT	p.V21V	KCNJ6_uc002ywo.2_Silent_p.V21V	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	21	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	CTGGGCTTTCGACGTCCTGAT	0.517													22	29					0	0	1	0	0
DSCR4	10281	broad.mit.edu	37	21	39427006	39427006	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39427006G>A	uc002ywp.2	-	3	405	c.300C>T	c.(298-300)CTC>CTT	p.L100L		NM_005867	NP_005858	P56555	DSCR4_HUMAN	Down syndrome critical region protein 4	100										ovary(1)	1						ATTTCTTGTGGAGCCCATGGA	0.368													36	88					0	0	1	0	0
DSCR4	10281	broad.mit.edu	37	21	39492501	39492501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39492501C>T	uc002ywp.2	-	2	235	c.130G>A	c.(130-132)GAA>AAA	p.E44K	DSCR8_uc002ywt.3_5'Flank|DSCR8_uc010gnp.2_5'Flank|DSCR8_uc010gnq.2_5'Flank|DSCR8_uc010gnr.2_5'Flank|DSCR8_uc010gns.2_5'Flank	NM_005867	NP_005858	P56555	DSCR4_HUMAN	Down syndrome critical region protein 4	44										ovary(1)	1						attttttcttctctaggaaaa	0													24	44					0	0	1	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671263	39671263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39671263C>T	uc002ywv.2	+	4	382	c.80C>T	c.(79-81)CCC>CTC	p.P27L	KCNJ15_uc002yww.2_Missense_Mutation_p.P27L|KCNJ15_uc002ywx.2_Missense_Mutation_p.P27L	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	27	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						GCCAACAGACCCCGCGTCATG	0.552													26	50					0	0	1	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671462	39671462	+	Silent	SNP	G	A	A	rs145343844		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39671462G>A	uc002ywv.2	+	4	581	c.279G>A	c.(277-279)GGG>GGA	p.G93G	KCNJ15_uc002yww.2_Silent_p.G93G|KCNJ15_uc002ywx.2_Silent_p.G93G	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	93	Extracellular (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						TTATTCATGGGGACTTAGAAC	0.478													49	106					0	0	1	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671554	39671554	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39671554C>T	uc002ywv.2	+	4	673	c.371C>T	c.(370-372)TCC>TTC	p.S124F	KCNJ15_uc002yww.2_Missense_Mutation_p.S124F|KCNJ15_uc002ywx.2_Missense_Mutation_p.S124F	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	124					synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						TCCCTGGAATCCCAGACAACC	0.498													31	101					0	0	1	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671604	39671604	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39671604C>T	uc002ywv.2	+	4	723	c.421C>T	c.(421-423)CAT>TAT	p.H141Y	KCNJ15_uc002yww.2_Missense_Mutation_p.H141Y|KCNJ15_uc002ywx.2_Missense_Mutation_p.H141Y	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	141	Extracellular (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						GGAATGTCCTCATGCCATCTT	0.502													30	86					0	0	1	0	0
KCNJ15	3772	broad.mit.edu	37	21	39672164	39672164	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39672164C>T	uc002ywv.2	+	4	1283	c.981C>T	c.(979-981)TTC>TTT	p.F327F	KCNJ15_uc002yww.2_Silent_p.F327F|KCNJ15_uc002ywx.2_Silent_p.F327F	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	327	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						TGGCTGATTTCAGTCAGTTTG	0.443													25	69					0	0	1	0	0
ERG	2078	broad.mit.edu	37	21	39755530	39755530	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39755530G>A	uc010gnw.2	-	12	1551	c.1256C>T	c.(1255-1257)CCC>CTC	p.P419L	ERG_uc002yxa.2_Missense_Mutation_p.P412L|ERG_uc011aek.1_Missense_Mutation_p.P320L|ERG_uc010gnv.2_Missense_Mutation_p.P296L|ERG_uc010gnx.2_Missense_Mutation_p.P395L|ERG_uc011ael.1_Missense_Mutation_p.P419L|ERG_uc002yxb.2_Missense_Mutation_p.P395L	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	419					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				GAGGTCTGAGGGGTACTTGTA	0.607													24	80					0	0	1	0	0
ERG	2078	broad.mit.edu	37	21	39755817	39755817	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39755817G>A	uc010gnw.2	-	12	1264	c.969C>T	c.(967-969)TTC>TTT	p.F323F	ERG_uc002yxa.2_Silent_p.F316F|ERG_uc011aek.1_Silent_p.F224F|ERG_uc010gnv.2_Silent_p.F200F|ERG_uc010gnx.2_Silent_p.F299F|ERG_uc011ael.1_Silent_p.F323F|ERG_uc002yxb.2_Silent_p.F299F	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	323	ETS.				cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				GCTCCAGGAGGAACTGCCAAA	0.587													16	61					0	0	1	0	0
ERG	2078	broad.mit.edu	37	21	39817345	39817345	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:39817345C>T	uc010gnw.2	-	4	534	c.239G>A	c.(238-240)AGC>AAC	p.S80N	ERG_uc002yxa.2_Missense_Mutation_p.S73N|ERG_uc011aek.1_Intron|ERG_uc010gnv.2_Intron|ERG_uc010gnx.2_Missense_Mutation_p.S80N|ERG_uc011ael.1_Missense_Mutation_p.S80N|ERG_uc002yxb.2_Missense_Mutation_p.S80N|ERG_uc011aem.1_Missense_Mutation_p.S73N|ERG_uc002yxc.3_Missense_Mutation_p.S80N	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	80					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				ATTCACCTGGCTAGGGTTACA	0.527													13	35					0	0	1	0	0
ETS2	2114	broad.mit.edu	37	21	40191557	40191557	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:40191557C>T	uc002yxg.2	+	8	1138	c.942C>T	c.(940-942)TTC>TTT	p.F314F	ETS2_uc002yxf.2_Silent_p.F454F	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	314					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				TCGAGAGCTTCGAAGATGACT	0.547													14	34					0	0	1	0	0
ETS2	2114	broad.mit.edu	37	21	40193564	40193564	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:40193564C>T	uc002yxg.2	+	9	1326	c.1130C>T	c.(1129-1131)TCC>TTC	p.S377F	ETS2_uc002yxf.2_Missense_Mutation_p.S517F	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	377	ETS.				positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				TCAGACAAATCCTGCCAGTCA	0.547													62	110					0	0	1	0	0
BRWD1	54014	broad.mit.edu	37	21	40572226	40572226	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:40572226G>A	uc002yxk.1	-	39	4811	c.4672C>T	c.(4672-4674)CGT>TGT	p.R1558C	BRWD1_uc010goc.1_Missense_Mutation_p.R201C|BRWD1_uc002yxl.2_Missense_Mutation_p.R1558C	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1558					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				GAGGATTCACGAGCTCTGGAA	0.443													23	88					0	0	1	0	0
BRWD1	54014	broad.mit.edu	37	21	40590106	40590106	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:40590106G>A	uc002yxk.1	-	31	3770	c.3631C>T	c.(3631-3633)CGA>TGA	p.R1211*	BRWD1_uc010goc.1_Intron|BRWD1_uc002yxl.2_Nonsense_Mutation_p.R1211*|BRWD1_uc010god.1_Nonsense_Mutation_p.R177*	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1211	Bromo 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				AGTCTCATTCGAATTGTGTAA	0.363													17	58					0	0	1	0	0
BRWD1	54014	broad.mit.edu	37	21	40648100	40648100	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:40648100G>A	uc002yxk.1	-	12	1283	c.1144C>T	c.(1144-1146)CGG>TGG	p.R382W	BRWD1_uc002yxl.2_Missense_Mutation_p.R382W|BRWD1_uc010goe.1_RNA|BRWD1_uc010gof.1_5'UTR|BRWD1_uc010gog.1_RNA|BRWD1_uc010goh.1_RNA|BRWD1_uc010goi.1_Missense_Mutation_p.R102W	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	382	WD 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				CACACTTACCGATCACCATTG	0.328													39	97					0	0	1	0	0
BRWD1	54014	broad.mit.edu	37	21	40652086	40652086	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:40652086G>A	uc002yxk.1	-	9	1059	c.920C>T	c.(919-921)TCC>TTC	p.S307F	BRWD1_uc002yxl.2_Missense_Mutation_p.S307F|BRWD1_uc010goe.1_RNA|BRWD1_uc010gof.1_5'UTR|BRWD1_uc010gog.1_RNA|BRWD1_uc010goh.1_RNA|BRWD1_uc010goi.1_Missense_Mutation_p.S27F	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	307	WD 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				AAATTTTAAGGATTCTAAATC	0.328													16	54					0	0	1	0	0
WRB	7485	broad.mit.edu	37	21	40765134	40765134	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:40765134C>T	uc002yxs.2	+	4	477	c.379C>T	c.(379-381)CCT>TCT	p.P127S	WRB_uc002yxt.3_Missense_Mutation_p.P93S|WRB_uc010goj.2_RNA	NM_004627	NP_004618	O00258	WRB_HUMAN	tryptophan rich basic protein isoform 1	127						integral to membrane|nucleolus					0		Prostate(19;1.2e-06)				TTATTCTGTCCCTGTGGCTGT	0.498													22	64					0	0	1	0	0
SH3BGR	6450	broad.mit.edu	37	21	40834415	40834415	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:40834415C>T	uc002yya.2	+	2	403	c.349C>T	c.(349-351)CCT>TCT	p.P117S	SH3BGR_uc002yxz.2_Missense_Mutation_p.P6S	NM_007341	NP_031367	P55822	SH3BG_HUMAN	SH3-binding domain and glutamic acid-rich	117					protein complex assembly	cytosol	SH3 domain binding|SH3/SH2 adaptor activity				0		all_cancers(19;1.16e-23)|all_epithelial(19;1.22e-20)|Prostate(19;2.55e-06)|Breast(209;0.0133)		STAD - Stomach adenocarcinoma(101;0.00151)		AGAGAATGTTCCTGGAGAGAA	0.418													23	50					0	0	1	0	0
B3GALT5	10317	broad.mit.edu	37	21	41032495	41032495	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41032495C>T	uc002yyb.1	+	5	601	c.9C>T	c.(7-9)TTC>TTT	p.F3F	B3GALT5_uc002yye.2_Silent_p.F3F|B3GALT5_uc002yyi.1_Silent_p.F3F|B3GALT5_uc002yyj.1_Silent_p.F3F|B3GALT5_uc002yyk.1_Silent_p.F3F|B3GALT5_uc002yyl.1_Silent_p.F3F|B3GALT5_uc002yym.1_Silent_p.F3F	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	3	Cytoplasmic (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				AGATGGCTTTCCCGAAGATGA	0.423													34	154					0	0	1	0	0
B3GALT5	10317	broad.mit.edu	37	21	41033272	41033272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41033272C>T	uc002yyb.1	+	5	1378	c.786C>T	c.(784-786)TCC>TCT	p.S262S	B3GALT5_uc002yye.2_Silent_p.S262S|B3GALT5_uc002yyi.1_Silent_p.S262S|B3GALT5_uc002yyj.1_Silent_p.S262S|B3GALT5_uc002yyk.1_Silent_p.S262S|B3GALT5_uc002yyl.1_Silent_p.S262S|B3GALT5_uc002yym.1_Silent_p.S262S	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	262	Lumenal (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				AGCTCCACTCCCAGCCGACCT	0.532													58	96					0	0	1	0	0
B3GALT5	10317	broad.mit.edu	37	21	41033329	41033329	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41033329C>T	uc002yyb.1	+	5	1435	c.843C>T	c.(841-843)ATC>ATT	p.I281I	B3GALT5_uc002yye.2_Silent_p.I281I|B3GALT5_uc002yyi.1_Silent_p.I281I|B3GALT5_uc002yyj.1_Silent_p.I281I|B3GALT5_uc002yyk.1_Silent_p.I281I|B3GALT5_uc002yyl.1_Silent_p.I281I|B3GALT5_uc002yym.1_Silent_p.I281I	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	281	Lumenal (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				TCAGGAGGATCGTGGCCTGCC	0.577													27	65					0	0	1	0	0
IGSF5	150084	broad.mit.edu	37	21	41137716	41137716	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41137716G>A	uc002yyo.2	+	3	458	c.355G>A	c.(355-357)GGG>AGG	p.G119R		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	119	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				CAGTGATTCGGGGAACATCAG	0.542													15	21					0	0	1	0	0
IGSF5	150084	broad.mit.edu	37	21	41151040	41151040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41151040C>T	uc002yyo.2	+	5	845	c.742C>T	c.(742-744)CCA>TCA	p.P248S		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	248	Extracellular (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				TATTAATATTCCAGGTGTATT	0.408													25	112					0	0	1	0	0
IGSF5	150084	broad.mit.edu	37	21	41165464	41165464	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41165464C>T	uc002yyo.2	+	8	1155	c.1052C>T	c.(1051-1053)ACC>ATC	p.T351I		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	351	Cytoplasmic (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				GTTGCAGACACCGCTTCTCTC	0.418													35	114					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41385135	41385135	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41385135G>A	uc002yyq.1	-	33	6317	c.5865C>T	c.(5863-5865)TCC>TCT	p.S1955S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1955	Cytoplasmic (Potential).			HRPGDLIHLPPYLRMDFLLNRGGPGTSRDLSLGQACLEPQK SRTLKRPTVLEPIPMEAASSASSTREGQSWQPGAVATLPQR EGAELGQAAKMSSSQESLLDSRGHLKGNNPYAKSYTLV -> IGQVTSYICLHTLEWTFC (in Ref. 1; AAC17966).	cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CTCTCGTGGAGGAGGCGGAGG	0.637													23	13					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41385254	41385254	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41385254G>A	uc002yyq.1	-	33	6198	c.5746C>T	c.(5746-5748)CCA>TCA	p.P1916S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1916	Cytoplasmic (Potential).			HRPGDLIHLPPYLRMDFLLNRGGPGTSRDLSLGQACLEPQK SRTLKRPTVLEPIPMEAASSASSTREGQSWQPGAVATLPQR EGAELGQAAKMSSSQESLLDSRGHLKGNNPYAKSYTLV -> IGQVTSYICLHTLEWTFC (in Ref. 1; AAC17966).	cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CTGGTGCCTGGACCACCTCGG	0.522													23	43					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41416085	41416085	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41416085C>T	uc002yyq.1	-	31	5755	c.5303G>A	c.(5302-5304)TGG>TAG	p.W1768*	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1768	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGGCAGCCTCCAGTCTGTGGT	0.617													36	92					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41423891	41423891	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41423891C>T	uc002yyq.1	-	30	5631	c.5179G>A	c.(5179-5181)GGA>AGA	p.G1727R	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1727	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCACTCGTTCCCGGCCGAGCG	0.478													32	178					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41450713	41450713	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41450713G>A	uc002yyq.1	-	26	5064	c.4612C>T	c.(4612-4614)CTG>TTG	p.L1538L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1538	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCTTCCTGCAGGTCATACAGG	0.577													14	37					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41450887	41450887	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41450887C>T	uc002yyq.1	-	26	4890	c.4438G>A	c.(4438-4440)GAG>AAG	p.E1480K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1480	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGCTCCTGCTCCTTTGAGAAC	0.572													6	29					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41452225	41452225	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41452225C>T	uc002yyq.1	-	25	4726	c.4274G>A	c.(4273-4275)GGG>GAG	p.G1425E	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1425	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGGAAAACTCCCCCACTGCTC	0.473													12	56					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41459131	41459131	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41459131C>T	uc002yyq.1	-	22	4386	c.3934G>A	c.(3934-3936)GAC>AAC	p.D1312N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1312	Extracellular (Potential).|Ig-like C2-type 10.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGAGAAGGGTCCCCAACAGCC	0.463													27	68					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41465770	41465770	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41465770G>A	uc002yyq.1	-	21	4180	c.3728C>T	c.(3727-3729)TCG>TTG	p.S1243L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1243	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GTAGGAAAACGAGTCGGGAGA	0.478													19	49					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41496173	41496173	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41496173C>T	uc002yyq.1	-	20	4097	c.3645G>A	c.(3643-3645)CTG>CTA	p.L1215L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1215	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGATGCCGTTCAGCTTGAGAG	0.567													23	156					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41516650	41516650	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41516650C>T	uc002yyq.1	-	17	3479	c.3027G>A	c.(3025-3027)AAG>AAA	p.K1009K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1009	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCAAATGTTTCTTGGGAGCCT	0.443													14	56					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41550893	41550893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41550893C>T	uc002yyq.1	-	15	3360	c.2908G>A	c.(2908-2910)GAG>AAG	p.E970K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	970	Extracellular (Potential).|Fibronectin type-III 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTGCTGGGCTCGCTCTTGCCA	0.602													16	47					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41559882	41559882	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41559882G>A	uc002yyq.1	-	13	3038	c.2586C>T	c.(2584-2586)TTC>TTT	p.F862F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	862	Ig-like C2-type 9.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGCAGGAAAAGAAACCAGAAT	0.403													20	55					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41648155	41648155	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41648155C>T	uc002yyq.1	-	11	2677	c.2225G>A	c.(2224-2226)CGA>CAA	p.R742Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	742	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AACTTGGATTCGGCCATTTAG	0.512													27	39					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41710035	41710035	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41710035G>A	uc002yyq.1	-	8	2228	c.1776C>T	c.(1774-1776)ACC>ACT	p.T592T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	592	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TACCTTTCACGGTCACGTGGA	0.507													46	101					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41710281	41710281	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41710281C>T	uc002yyq.1	-	8	1982	c.1530G>A	c.(1528-1530)ATG>ATA	p.M510I	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	510	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGATGTTTTTCATTGGTCGAA	0.418													13	52					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41711060	41711060	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41711060C>T	uc002yyq.1	-	7	1945	c.1493G>A	c.(1492-1494)CGA>CAA	p.R498Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	498	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TACGTTTATTCGAGCCTGGTA	0.522													17	60					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41711165	41711165	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41711165C>T	uc002yyq.1	-	7	1840	c.1388G>A	c.(1387-1389)GGG>GAG	p.G463E	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	463	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GACCACGTTCCCCTCCGACGT	0.612													27	54					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41711233	41711233	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41711233C>T	uc002yyq.1	-	7	1772	c.1320G>A	c.(1318-1320)TGG>TGA	p.W440*	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	440	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CGTCCAGGGTCCACGTGATCG	0.537													15	36					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41725472	41725472	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41725472G>A	uc002yyq.1	-	5	1306	c.854C>T	c.(853-855)CCC>CTC	p.P285L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	285	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGAGTCCGAGGGGCGAATGTT	0.537													29	94					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41725476	41725476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41725476G>A	uc002yyq.1	-	5	1302	c.850C>T	c.(850-852)CGC>TGC	p.R284C	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	284	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCCGAGGGGCGAATGTTCTCA	0.542													26	84					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41725620	41725620	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41725620C>T	uc002yyq.1	-	5	1158	c.706G>A	c.(706-708)GCC>ACC	p.A236T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	236	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCAGCCATGGCTTTGCGATGG	0.547													14	22					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	42080468	42080468	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:42080468G>A	uc002yyq.1	-	2	725	c.273C>T	c.(271-273)TTC>TTT	p.F91F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	91	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTAAGGTACTGAAGCTTGAAG	0.498													41	109					0	0	1	0	0
BACE2	25825	broad.mit.edu	37	21	42647492	42647492	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:42647492C>T	uc002yyw.2	+	9	1961	c.1498C>T	c.(1498-1500)CCC>TCC	p.P500S	BACE2_uc002yyx.2_Missense_Mutation_p.P450S|BACE2_uc002yyy.2_3'UTR|BACE2_uc010goo.2_RNA	NM_012105	NP_036237	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2 isoform A	500	Cytoplasmic (Potential).				membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				TCAGCGTCGCCCCCGTGACCC	0.542													9	47					0	0	1	0	0
MX2	4600	broad.mit.edu	37	21	42778721	42778721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:42778721G>A	uc002yzf.1	+	13	1805	c.1701G>A	c.(1699-1701)ATG>ATA	p.M567I	MX2_uc002yzg.1_Missense_Mutation_p.M290I|MX2_uc010gop.1_Missense_Mutation_p.M49I	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	567					response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				CAGAAAACATGATCCAACTTC	0.368													26	74					0	0	1	0	0
MX2	4600	broad.mit.edu	37	21	42780032	42780032	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:42780032C>T	uc002yzf.1	+	14	2124	c.2020C>T	c.(2020-2022)CGC>TGC	p.R674C	MX2_uc002yzg.1_Missense_Mutation_p.R397C|MX2_uc010gop.1_Missense_Mutation_p.R156C	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	674	GED.				response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				GGAAAAAAATCGCTATTCCTG	0.468													54	45					0	0	1	0	0
MX1	4599	broad.mit.edu	37	21	42815746	42815746	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:42815746C>T	uc002yzh.2	+	13	1908	c.961C>T	c.(961-963)CCC>TCC	p.P321S	MX1_uc002yzi.2_Missense_Mutation_p.P321S|MX1_uc010goq.2_Missense_Mutation_p.P321S	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	321					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				GGCCACGGTTCCCTGCCTGGC	0.507													40	135					0	0	1	0	0
MX1	4599	broad.mit.edu	37	21	42830653	42830653	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:42830653G>A	uc002yzh.2	+	19	2904	c.1957G>A	c.(1957-1959)GCT>ACT	p.A653T	MX1_uc002yzi.2_Missense_Mutation_p.A653T|MX1_uc010goq.2_Missense_Mutation_p.A653T	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	653	GED.				induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				GCTGACGCAGGCTCGGCGCCG	0.652													8	54					0	0	1	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42866339	42866339	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:42866339G>A	uc002yzj.2	-	3	316	c.182C>T	c.(181-183)TCC>TTC	p.S61F	TMPRSS2_uc010gor.2_Missense_Mutation_p.S98F|TMPRSS2_uc010gos.1_Missense_Mutation_p.S61F	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	61	Cytoplasmic (Potential).				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				GACGGGGTTGGAAGCCTGCGT	0.602			T	ERG|ETV1|ETV4|ETV5	prostate 								12	40					0	0	1	0	0
PRDM15	63977	broad.mit.edu	37	21	43259928	43259928	+	Silent	SNP	G	A	A	rs140077118		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43259928G>A	uc002yzq.1	-	14	1884	c.1773C>T	c.(1771-1773)AGC>AGT	p.S591S	PRDM15_uc002yzo.2_Silent_p.S262S|PRDM15_uc002yzp.2_Silent_p.S262S|PRDM15_uc002yzr.1_Silent_p.S262S	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	591					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTGGAGGAAGGCTTTTGGCTT	0.602													42	134					0	0	1	0	0
PRDM15	63977	broad.mit.edu	37	21	43274922	43274922	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43274922G>A	uc002yzq.1	-	12	1500	c.1389C>T	c.(1387-1389)TTC>TTT	p.F463F	PRDM15_uc002yzo.2_Silent_p.F134F|PRDM15_uc002yzp.2_Silent_p.F134F|PRDM15_uc002yzr.1_Silent_p.F134F	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	463	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGTCCTTCTGGAACACCTGAA	0.612													9	29					0	0	1	0	0
C2CD2	25966	broad.mit.edu	37	21	43321774	43321774	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43321774G>A	uc002yzw.2	-	12	1759	c.1517C>T	c.(1516-1518)TCG>TTG	p.S506L	C2CD2_uc002yzs.2_5'UTR|C2CD2_uc002yzt.2_Missense_Mutation_p.S122L|C2CD2_uc002yzu.2_Missense_Mutation_p.S338L|C2CD2_uc002yzv.2_Missense_Mutation_p.S351L|C2CD2_uc002yzx.1_Missense_Mutation_p.S351L	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	506						cytosol|extracellular region|nucleus				ovary(1)	1						CTTCCGTGGCGACTTGAGTTT	0.498													21	75					0	0	1	0	0
C2CD2	25966	broad.mit.edu	37	21	43327114	43327114	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43327114G>A	uc002yzw.2	-	10	1547	c.1305C>T	c.(1303-1305)TCC>TCT	p.S435S	C2CD2_uc002yzt.2_Silent_p.S51S|C2CD2_uc002yzu.2_Silent_p.S267S|C2CD2_uc002yzv.2_Silent_p.S280S|C2CD2_uc002yzx.1_Silent_p.S280S	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	435						cytosol|extracellular region|nucleus				ovary(1)	1						AGCTCAGCGGGGACGCCCTCC	0.582													10	59					0	0	1	0	0
C2CD2	25966	broad.mit.edu	37	21	43332497	43332497	+	Silent	SNP	G	A	A	rs139545553	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43332497G>A	uc002yzw.2	-	7	1139	c.897C>T	c.(895-897)TTC>TTT	p.F299F	C2CD2_uc002yzu.2_Silent_p.F131F|C2CD2_uc002yzv.2_Silent_p.F144F|C2CD2_uc002yzx.1_Silent_p.F144F	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	299	C2.					cytosol|extracellular region|nucleus				ovary(1)	1						GGGTGCTGGAGAACCTCTGAA	0.498													11	12					0	0	1	0	0
ZNF295	49854	broad.mit.edu	37	21	43411770	43411770	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43411770G>A	uc002zab.3	-	3	2649	c.2435C>T	c.(2434-2436)CCC>CTC	p.P812L	ZNF295_uc002yzz.3_Missense_Mutation_p.P611L|ZNF295_uc002yzy.3_Missense_Mutation_p.P812L|ZNF295_uc002zaa.3_Missense_Mutation_p.P812L	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	812					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GTCCAAAACGGGCAAAGAAAA	0.502													42	93					0	0	1	0	0
ZNF295	49854	broad.mit.edu	37	21	43413171	43413171	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43413171G>A	uc002zab.3	-	3	1248	c.1034C>T	c.(1033-1035)TCG>TTG	p.S345L	ZNF295_uc002yzz.3_Missense_Mutation_p.S345L|ZNF295_uc002yzy.3_Missense_Mutation_p.S345L|ZNF295_uc002zaa.3_Missense_Mutation_p.S345L|ZNF295_uc010gov.1_Missense_Mutation_p.S345L|ZNF295_uc002zac.2_Missense_Mutation_p.S345L	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	345					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTATCCATCGACAATGACCG	0.478													25	52					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43496117	43496117	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43496117A>T	uc002zaf.1	+	2	80	c.80A>T	c.(79-81)AAA>ATA	p.K27I	UMODL1_uc002zad.1_5'UTR|UMODL1_uc002zae.1_5'UTR|UMODL1_uc002zag.1_Missense_Mutation_p.K27I|uc002zah.1_RNA	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	27	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						CTTTCAGAAAAAGGCCTCTCC	0.567													74	155					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43505518	43505518	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43505518C>T	uc002zaf.1	+	4	599	c.599C>T	c.(598-600)TCC>TTC	p.S200F	UMODL1_uc002zad.1_Missense_Mutation_p.S128F|UMODL1_uc002zae.1_Missense_Mutation_p.S128F|UMODL1_uc002zag.1_Missense_Mutation_p.S200F|UMODL1_uc010gow.1_5'UTR|UMODL1_uc002zai.1_5'UTR|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_5'UTR|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_5'UTR	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	200	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						CTTCTGCATTCCTTGGTAGGT	0.607													33	177					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43522383	43522383	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43522383C>T	uc002zaf.1	+	8	1294	c.1294C>T	c.(1294-1296)CAC>TAC	p.H432Y	UMODL1_uc002zad.1_Missense_Mutation_p.H360Y|UMODL1_uc002zae.1_Missense_Mutation_p.H360Y|UMODL1_uc002zag.1_Missense_Mutation_p.H432Y|UMODL1_uc010gow.1_Missense_Mutation_p.H224Y|UMODL1_uc002zai.1_Missense_Mutation_p.H83Y|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_Missense_Mutation_p.H83Y|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_Missense_Mutation_p.H177Y|C21orf128_uc002zak.2_3'UTR	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	432	Extracellular (Potential).|SEA 1.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						ACAACTGCTTCACGAGGTAAA	0.458													19	58					0	0	1	0	0
C21orf128	150147	broad.mit.edu	37	21	43524025	43524025	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43524025G>A	uc002zak.2	-	2	360	c.208C>T	c.(208-210)CCC>TCC	p.P70S	UMODL1_uc002zad.1_Silent_p.G377G|UMODL1_uc002zae.1_Silent_p.G377G|UMODL1_uc002zaf.1_Silent_p.G449G|UMODL1_uc002zag.1_Silent_p.G449G|UMODL1_uc010gow.1_Silent_p.G241G|UMODL1_uc002zai.1_Silent_p.G100G|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_Silent_p.G100G|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_Silent_p.G194G	NR_027243				RecName: Full=Uncharacterized protein C21orf128;												0						ACCGAAGTGGGAAGCTGAGAA	0.567													40	100					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43547288	43547288	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43547288G>A	uc002zaf.1	+	19	3466	c.3466G>A	c.(3466-3468)GAG>AAG	p.E1156K	UMODL1_uc002zad.1_Missense_Mutation_p.E1084K|UMODL1_uc002zae.1_Missense_Mutation_p.E1212K|UMODL1_uc002zag.1_Missense_Mutation_p.E1284K|UMODL1_uc002zal.1_Missense_Mutation_p.E106K|UMODL1_uc010gpa.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1156	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GGTCCTGACGGAGTGCTGGGC	0.567													31	64					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43547321	43547321	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43547321G>A	uc002zaf.1	+	19	3499	c.3499G>A	c.(3499-3501)GAC>AAC	p.D1167N	UMODL1_uc002zad.1_Missense_Mutation_p.D1095N|UMODL1_uc002zae.1_Missense_Mutation_p.D1223N|UMODL1_uc002zag.1_Missense_Mutation_p.D1295N|UMODL1_uc002zal.1_Missense_Mutation_p.D117N|UMODL1_uc010gpa.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1167	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						CAACGCCCGGGACCCCATCAC	0.567													16	65					0	0	1	0	0
ABCG1	9619	broad.mit.edu	37	21	43621793	43621793	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43621793G>A	uc002zan.2	+	2	268	c.8G>A	c.(7-9)GGA>GAA	p.G3E	ABCG1_uc002zam.2_5'UTR	NM_207627	NP_997510	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	Error:Variant_position_missing_in_P45844_after_alignment					amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	ttgatgctgggaacgcagggg	0.279													4	37					0	0	1	0	0
ABCG1	9619	broad.mit.edu	37	21	43708058	43708058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43708058C>T	uc002zaq.2	+	9	1139	c.1033C>T	c.(1033-1035)CGG>TGG	p.R345W	ABCG1_uc002zan.2_Missense_Mutation_p.R347W|ABCG1_uc002zam.2_Missense_Mutation_p.R323W|ABCG1_uc002zao.2_Missense_Mutation_p.R342W|ABCG1_uc002zap.2_Missense_Mutation_p.R345W|ABCG1_uc002zar.2_Missense_Mutation_p.R356W|ABCG1_uc011aev.1_Missense_Mutation_p.R356W|ABCG1_uc010gpb.1_5'UTR	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	345	Cytoplasmic (Potential).				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	GAGAGCGGTTCGGGAGGGCAT	0.602													46	218					0	0	1	0	0
ABCG1	9619	broad.mit.edu	37	21	43716295	43716295	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43716295C>T	uc002zaq.2	+	15	1936	c.1830C>T	c.(1828-1830)ATC>ATT	p.I610I	ABCG1_uc002zan.2_Silent_p.I600I|ABCG1_uc002zam.2_Silent_p.I576I|ABCG1_uc002zao.2_Silent_p.I595I|ABCG1_uc002zap.2_Silent_p.I598I|ABCG1_uc002zar.2_Silent_p.I609I|ABCG1_uc011aev.1_Silent_p.I621I|uc002zau.2_5'Flank	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	610	ABC transmembrane type-2.|Extracellular (Potential).				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	AAGGGGTCATCCTCTCCATCT	0.592													24	55					0	0	1	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43802323	43802323	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43802323C>T	uc002zbb.2	-	9	1004	c.803G>A	c.(802-804)TGG>TAG	p.W268*	TMPRSS3_uc002zay.2_Nonsense_Mutation_p.W26*|TMPRSS3_uc002zaz.2_Nonsense_Mutation_p.W141*|TMPRSS3_uc002zba.2_Nonsense_Mutation_p.W141*|TMPRSS3_uc002zbc.2_Nonsense_Mutation_p.W268*|TMPRSS3_uc002zbd.2_Nonsense_Mutation_p.W268*	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	268	Peptidase S1.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						CTGGATGGTCCATGACTTGGG	0.498													14	39					0	0	1	0	0
UBASH3A	53347	broad.mit.edu	37	21	43833575	43833575	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43833575C>T	uc002zbe.2	+	5	646	c.610C>T	c.(610-612)CTG>TTG	p.L204L	UBASH3A_uc002zbf.2_Intron|UBASH3A_uc010gpc.2_Intron|UBASH3A_uc010gpd.2_Intron|UBASH3A_uc010gpe.2_Intron	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	204						cytosol|nucleus				ovary(3)	3						TGGCCCTAACCTGAGGCTGAG	0.527													16	42					0	0	1	0	0
RSPH1	89765	broad.mit.edu	37	21	43913099	43913099	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43913099C>T	uc002zbg.2	-	2	250	c.145G>A	c.(145-147)GAA>AAA	p.E49K		NM_080860	NP_543136	Q8WYR4	RSPH1_HUMAN	testis-specific gene A2	49	MORN 2.				meiosis	cytosol|nucleus				ovary(1)	1						TTACCGAATTCGTAGCTCCCT	0.502													58	252					0	0	1	0	0
SLC37A1	54020	broad.mit.edu	37	21	43959657	43959657	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43959657A>T	uc002zbi.2	+	7	798	c.386A>T	c.(385-387)TAC>TTC	p.Y129F	SLC37A1_uc002zbj.2_Missense_Mutation_p.Y129F	NM_018964	NP_061837	P57057	GLPT_HUMAN	solute carrier family 37 member 1	129	Helical; (Potential).				carbohydrate transport|transmembrane transport	integral to membrane					0						ATTAGGTATTACCTAACTTTC	0.507													23	75					0	0	1	0	0
SLC37A1	54020	broad.mit.edu	37	21	43982259	43982259	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:43982259C>T	uc002zbi.2	+	13	1465	c.1053C>T	c.(1051-1053)CCC>CCT	p.P351P	SLC37A1_uc002zbj.2_Silent_p.P351P	NM_018964	NP_061837	P57057	GLPT_HUMAN	solute carrier family 37 member 1	351	Helical; (Potential).				carbohydrate transport|transmembrane transport	integral to membrane					0						TCTGGCTGCCCCTGTACATCA	0.507													30	106					0	0	1	0	0
PDE9A	5152	broad.mit.edu	37	21	44189219	44189219	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:44189219G>A	uc002zbm.2	+	17	1607	c.1544G>A	c.(1543-1545)GGG>GAG	p.G515E	PDE9A_uc002zbn.2_Missense_Mutation_p.G388E|PDE9A_uc002zbo.2_Missense_Mutation_p.G462E|PDE9A_uc002zbp.2_Missense_Mutation_p.G308E|PDE9A_uc002zbq.2_Missense_Mutation_p.G413E|PDE9A_uc002zbs.2_Missense_Mutation_p.G308E|PDE9A_uc002zbr.2_Missense_Mutation_p.G308E|PDE9A_uc002zbt.2_Missense_Mutation_p.G387E|PDE9A_uc002zbu.2_Missense_Mutation_p.G381E|PDE9A_uc002zbv.2_Missense_Mutation_p.G355E|PDE9A_uc002zbw.2_Missense_Mutation_p.G298E|PDE9A_uc002zbx.2_Missense_Mutation_p.G455E|PDE9A_uc002zby.2_Missense_Mutation_p.G298E|PDE9A_uc002zbz.2_Missense_Mutation_p.G407E|PDE9A_uc002zca.2_Missense_Mutation_p.G474E|PDE9A_uc002zcb.2_Missense_Mutation_p.G489E|PDE9A_uc002zcc.2_Missense_Mutation_p.G414E|PDE9A_uc002zcd.2_Missense_Mutation_p.G429E|PDE9A_uc002zce.2_Missense_Mutation_p.G448E|PDE9A_uc002zcf.2_Missense_Mutation_p.G308E|PDE9A_uc002zcg.2_Missense_Mutation_p.G308E|PDE9A_uc002zch.2_Missense_Mutation_p.G298E	NM_002606	NP_002597	O76083	PDE9A_HUMAN	phosphodiesterase 9A isoform a	515	Catalytic (By similarity).				platelet activation|signal transduction	cytosol|endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm|ruffle membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|skin(1)	2						GCCCAGATTGGGTTCATCAAG	0.502													28	51					0	0	1	0	0
CRYAA	1409	broad.mit.edu	37	21	44590729	44590729	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:44590729G>A	uc002zdd.1	+	2	361	c.292G>A	c.(292-294)GGA>AGA	p.G98R		NM_000394	NP_000385	P02489	CRYAA_HUMAN	crystallin, alpha A	98					anti-apoptosis|negative regulation of intracellular transport|protein homooligomerization|response to heat|visual perception	cytoplasm|nucleus	structural constituent of eye lens|unfolded protein binding			breast(1)|central_nervous_system(1)	2						GGAGATCCACGGAAAGCACAA	0.642													13	53					0	0	1	0	0
HSF2BP	11077	broad.mit.edu	37	21	44949807	44949807	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:44949807G>A	uc002zdi.2	-	9	1164	c.832C>T	c.(832-834)CTT>TTT	p.L278F	HSF2BP_uc011aey.1_Missense_Mutation_p.L203F	NM_007031	NP_008962	O75031	HSF2B_HUMAN	heat shock transcription factor 2 binding	278					spermatogenesis|transcription from RNA polymerase II promoter	cytosol	binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.18)		GACTGGACAAGCCTCAGTACA	0.443													24	49					0	0	1	0	0
HSF2BP	11077	broad.mit.edu	37	21	45012194	45012194	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45012194G>A	uc002zdi.2	-	8	1040	c.708C>T	c.(706-708)TCC>TCT	p.S236S	HSF2BP_uc011aey.1_Silent_p.S161S	NM_007031	NP_008962	O75031	HSF2B_HUMAN	heat shock transcription factor 2 binding	236					spermatogenesis|transcription from RNA polymerase II promoter	cytosol	binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.18)		CATTGTATAGGGACATCAGCA	0.418													21	56					0	0	1	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45472166	45472166	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45472166C>T	uc002zea.2	+	4	460	c.291C>T	c.(289-291)ACC>ACT	p.T97T	TRAPPC10_uc010gpo.2_5'UTR|TRAPPC10_uc002zdz.2_Silent_p.T97T	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	97					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						TTTAGGATACCGAAGTGTATA	0.398													8	117					0	0	1	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45472270	45472270	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45472270C>T	uc002zea.2	+	4	564	c.395C>T	c.(394-396)GCC>GTC	p.A132V	TRAPPC10_uc010gpo.2_5'UTR|TRAPPC10_uc002zdz.2_Missense_Mutation_p.A132V	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	132					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						GAAAATGATGCCAAGAAAAAA	0.368													29	119					0	0	1	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45518302	45518302	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45518302C>T	uc002zea.2	+	21	3402	c.3233C>T	c.(3232-3234)TCC>TTC	p.S1078F	TRAPPC10_uc010gpo.2_Missense_Mutation_p.S789F|TRAPPC10_uc011afa.1_Missense_Mutation_p.S456F|TRAPPC10_uc011afb.1_Missense_Mutation_p.S183F	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	1078					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						AGAACAGGCTCCCTCTGCTCC	0.473													56	159					0	0	1	0	0
ICOSLG	23308	broad.mit.edu	37	21	45656834	45656834	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45656834C>T	uc002zee.2	-	3	456	c.322G>A	c.(322-324)GAG>AAG	p.E108K	ICOSLG_uc011afc.1_Missense_Mutation_p.E18K|ICOSLG_uc002zef.2_Intron|ICOSLG_uc010gpp.1_Missense_Mutation_p.E108K	NM_015259	NP_056074	O75144	ICOSL_HUMAN	inducible T-cell co-stimulator ligand precursor	108	Ig-like V-type.|Extracellular (Potential).				B cell activation|defense response|hyperosmotic response|positive regulation of activated T cell proliferation|signal transduction|T cell activation|T cell costimulation		receptor binding				0				Colorectal(79;0.0163)|READ - Rectum adenocarcinoma(84;0.0772)		AACTTCTGCTCGTCCTGGGGG	0.602													7	98					0	0	1	0	0
DNMT3L	29947	broad.mit.edu	37	21	45670699	45670699	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45670699G>A	uc002zeg.1	-	10	1387	c.903C>T	c.(901-903)TTC>TTT	p.F301F	DNMT3L_uc002zeh.1_Silent_p.F301F	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	301					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		GCACCTCCAGGAAGCGAGATG	0.647													30	92					0	0	1	0	0
DNMT3L	29947	broad.mit.edu	37	21	45670725	45670725	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45670725C>T	uc002zeg.1	-	10	1361	c.877G>A	c.(877-879)GAA>AAA	p.E293K	DNMT3L_uc002zeh.1_Missense_Mutation_p.E293K	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	293					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		TCCAGGTCTTCCTTGTTCAGC	0.642													19	69					0	0	1	0	0
DNMT3L	29947	broad.mit.edu	37	21	45671561	45671561	+	Silent	SNP	G	A	A	rs148926071		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45671561G>A	uc002zeg.1	-	9	1198	c.714C>T	c.(712-714)TTC>TTT	p.F238F	DNMT3L_uc002zeh.1_Silent_p.F238F	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	238					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding	p.F238F(1)		skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		ACACAAGATCGAAGGGTCCCC	0.652													9	36					0	0	1	0	0
DNMT3L	29947	broad.mit.edu	37	21	45678478	45678478	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45678478G>A	uc002zeg.1	-	6	928	c.444C>T	c.(442-444)TCC>TCT	p.S148S	DNMT3L_uc002zeh.1_Silent_p.S148S	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	148	PHD-type; atypical.|ADD.				DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		CGCTTCGGGAGGACGGCAGGC	0.662													6	26					0	0	1	0	0
DNMT3L	29947	broad.mit.edu	37	21	45679538	45679538	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45679538C>T	uc002zeg.1	-	4	692	c.208G>A	c.(208-210)GGA>AGA	p.G70R	DNMT3L_uc002zeh.1_Missense_Mutation_p.G70R	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	70	GATA-type; atypical.|ADD.				DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		CAGATCCCTCCCTCAAACAGA	0.478													7	25					0	0	1	0	0
DNMT3L	29947	broad.mit.edu	37	21	45681059	45681059	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45681059G>A	uc002zeg.1	-	2	568	c.84C>T	c.(82-84)TCC>TCT	p.S28S	DNMT3L_uc002zeh.1_Silent_p.S28S	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	28					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		CGGGTGAAACGGAGCTTGAGA	0.602													36	83					0	0	1	0	0
AIRE	326	broad.mit.edu	37	21	45706614	45706614	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45706614G>A	uc002zei.2	+	2	434	c.307G>A	c.(307-309)GAT>AAT	p.D103N		NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	103	HSR.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		CTTCCCCAAAGGTGGGTCCTG	0.637									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				23	68					0	0	1	0	0
AIRE	326	broad.mit.edu	37	21	45706897	45706897	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45706897C>T	uc002zei.2	+	3	471	c.344C>T	c.(343-345)CCC>CTC	p.P115L		NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	115					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		GGGAGGAAGCCCCCGGCCGTC	0.677									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				23	63					0	0	1	0	0
AIRE	326	broad.mit.edu	37	21	45708297	45708297	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45708297G>A	uc002zei.2	+	5	735	c.608G>A	c.(607-609)CGA>CAA	p.R203Q	AIRE_uc010gpq.2_5'Flank|AIRE_uc002zej.2_5'Flank|AIRE_uc010gpr.2_5'Flank	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	203	SAND.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		CCGGGAGCCCGAGGGGCCGTG	0.632									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				33	59					0	0	1	0	0
AIRE	326	broad.mit.edu	37	21	45709910	45709910	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45709910C>T	uc002zei.2	+	7	965	c.838C>T	c.(838-840)CCC>TCC	p.P280S	AIRE_uc010gpq.2_5'Flank|AIRE_uc002zej.2_5'Flank|AIRE_uc010gpr.2_5'Flank	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	280	SAND.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		GGGCAGCGTTCCCGCCCCTCT	0.687									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				7	19					0	0	1	0	0
AIRE	326	broad.mit.edu	37	21	45711070	45711070	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45711070C>T	uc002zei.2	+	8	1099	c.972C>T	c.(970-972)TCC>TCT	p.S324S	AIRE_uc010gpq.2_RNA|AIRE_uc002zej.2_Silent_p.S127S|AIRE_uc010gpr.2_Silent_p.S127S	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	324	PHD-type 1.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		CCTGCCTGTCCCCTCCGCTCC	0.682									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				10	30					0	0	1	0	0
AIRE	326	broad.mit.edu	37	21	45711088	45711088	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45711088C>T	uc002zei.2	+	8	1117	c.990C>T	c.(988-990)ATC>ATT	p.I330I	AIRE_uc010gpq.2_RNA|AIRE_uc002zej.2_Silent_p.I133I|AIRE_uc010gpr.2_Silent_p.I133I	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	330	PHD-type 1.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		TCCGGGAGATCCCCAGGTGAG	0.701									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				8	24					0	0	1	0	0
AIRE	326	broad.mit.edu	37	21	45712900	45712900	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45712900G>A	uc002zei.2	+	10	1247	c.1120G>A	c.(1120-1122)GGA>AGA	p.G374R	AIRE_uc010gpq.2_RNA|AIRE_uc002zej.2_Missense_Mutation_p.G177R|AIRE_uc010gpr.2_Missense_Mutation_p.G177R	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	374					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		TAGGTCGGCGGGAGAGGAGGT	0.682									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				10	65					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45798932	45798932	+	Missense_Mutation	SNP	C	T	T	rs138507862		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45798932C>T	uc002zet.1	+	9	1280	c.1067C>T	c.(1066-1068)TCG>TTG	p.S356L	TRPM2_uc002zeu.1_Missense_Mutation_p.S356L|TRPM2_uc002zew.1_Missense_Mutation_p.S356L|TRPM2_uc010gpt.1_Missense_Mutation_p.S356L|TRPM2_uc002zex.1_Missense_Mutation_p.S142L	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	356	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GTGGAGGGCTCGGGCCGCGTG	0.642													40	77					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45799080	45799080	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45799080G>A	uc002zet.1	+	9	1428	c.1215G>A	c.(1213-1215)AAG>AAA	p.K405K	TRPM2_uc002zeu.1_Silent_p.K405K|TRPM2_uc002zew.1_Silent_p.K405K|TRPM2_uc010gpt.1_Silent_p.K405K|TRPM2_uc002zex.1_Silent_p.K191K	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	405	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGACCAAAAAGGTGAGGCTGA	0.557													23	51					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45802612	45802612	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45802612C>T	uc002zet.1	+	10	1440	c.1227C>T	c.(1225-1227)ATC>ATT	p.I409I	TRPM2_uc002zeu.1_Silent_p.I409I|TRPM2_uc002zew.1_Silent_p.I409I|TRPM2_uc010gpt.1_Silent_p.I409I|TRPM2_uc002zex.1_Silent_p.I195I	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	409	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCCAAGATATCGTCCGGAGGC	0.562													7	24					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45810908	45810908	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45810908G>A	uc002zet.1	+	11	1653	c.1440G>A	c.(1438-1440)AAG>AAA	p.K480K	TRPM2_uc002zeu.1_Silent_p.K480K|TRPM2_uc002zew.1_Silent_p.K480K|TRPM2_uc010gpt.1_Silent_p.K480K|TRPM2_uc002zex.1_Silent_p.K266K|TRPM2_uc002zey.1_5'Flank	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	480	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGCAGTGGAAGGTAAGTCTTC	0.577													21	64					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45821601	45821601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45821601C>T	uc002zet.1	+	17	2572	c.2359C>T	c.(2359-2361)CGC>TGC	p.R787C	TRPM2_uc002zeu.1_Missense_Mutation_p.R787C|TRPM2_uc002zew.1_Missense_Mutation_p.R787C|TRPM2_uc010gpt.1_Missense_Mutation_p.R787C|TRPM2_uc002zex.1_Missense_Mutation_p.R573C|TRPM2_uc002zey.1_Missense_Mutation_p.R300C	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	787	Extracellular (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCCCGCGGCCCGCGCCCGTGC	0.652													39	95					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45821719	45821719	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45821719C>T	uc002zet.1	+	17	2690	c.2477C>T	c.(2476-2478)TCC>TTC	p.S826F	TRPM2_uc002zeu.1_Missense_Mutation_p.S826F|TRPM2_uc002zew.1_Missense_Mutation_p.S826F|TRPM2_uc010gpt.1_Missense_Mutation_p.S826F|TRPM2_uc002zex.1_Missense_Mutation_p.S612F|TRPM2_uc002zey.1_Missense_Mutation_p.S339F	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	826	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCTGTGCCCTCCTGGTGCGAG	0.632													113	255					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45837921	45837921	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45837921C>T	uc002zet.1	+	22	3471	c.3258C>T	c.(3256-3258)CTC>CTT	p.L1086L	TRPM2_uc002zeu.1_Silent_p.L1086L|TRPM2_uc002zew.1_Silent_p.L1086L|TRPM2_uc010gpt.1_Silent_p.L1086L|TRPM2_uc002zex.1_Silent_p.L872L|TRPM2_uc002zey.1_Silent_p.L599L|uc011afe.1_Intron	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1086	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ccTTCATCCTCCTCAGCCACC	0.502													43	68					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45860744	45860744	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45860744C>T	uc002zet.1	+	32	4555	c.4342C>T	c.(4342-4344)CAC>TAC	p.H1448Y	TRPM2_uc002zeu.1_Missense_Mutation_p.H1448Y|TRPM2_uc002zew.1_Missense_Mutation_p.H1448Y|TRPM2_uc010gpt.1_Missense_Mutation_p.H1498Y|TRPM2_uc002zex.1_Missense_Mutation_p.H1234Y|TRPM2_uc002zey.1_Missense_Mutation_p.H927Y|TRPM2_uc011aff.1_Missense_Mutation_p.H129Y	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1448	Nudix hydrolase.|Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CGTCAGCGTCCACTTCCAGGA	0.622													46	95					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45861601	45861601	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45861601C>T	uc002zet.1	+	33	4626	c.4413C>T	c.(4411-4413)GCC>GCT	p.A1471A	TRPM2_uc002zeu.1_Silent_p.A1471A|TRPM2_uc002zew.1_Silent_p.A1471A|TRPM2_uc010gpt.1_Silent_p.A1521A|TRPM2_uc002zex.1_Silent_p.A1257A|TRPM2_uc002zey.1_Silent_p.A950A|TRPM2_uc011aff.1_Silent_p.A152A	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1471	Nudix hydrolase.|Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ACTCGGGGGCCTCCATCCGAT	0.652													7	36					0	0	1	0	0
LRRC3	81543	broad.mit.edu	37	21	45877172	45877172	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45877172C>T	uc002zfa.2	+	2	938	c.645C>T	c.(643-645)TTC>TTT	p.F215F		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	215	Helical; (Potential).					integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		TCGGCTGGTTCGCCATGGTGA	0.642													8	82					0	0	1	0	0
LRRC3	81543	broad.mit.edu	37	21	45877193	45877193	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45877193C>T	uc002zfa.2	+	2	959	c.666C>T	c.(664-666)GTC>GTT	p.V222V		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	222	Helical; (Potential).					integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		TCGCCTACGTCGTGTACTATG	0.657													32	80					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45929264	45929264	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45929264G>A	uc002zfe.1	-	10	1638	c.1572C>T	c.(1570-1572)TTC>TTT	p.F524F	C21orf29_uc010gpv.1_Silent_p.F456F	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	524	EAR 5.				cell adhesion	extracellular region	structural molecule activity				0						CTGCAGCACCGAACGTCTAGG	0.383													8	30					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45941801	45941801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45941801G>A	uc002zfe.1	-	9	1597	c.1531C>T	c.(1531-1533)CTC>TTC	p.L511F	C21orf29_uc010gpv.1_Missense_Mutation_p.L443F	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	511	EAR 4.				cell adhesion	extracellular region	structural molecule activity				0						GAGCCCAGGAGTCGGATGTAG	0.632													23	65					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45945563	45945563	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45945563A>G	uc002zfe.1	-	8	1375	c.1309T>C	c.(1309-1311)TTC>CTC	p.F437L	C21orf29_uc010gpv.1_Missense_Mutation_p.F369L	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	437	EAR 3.				cell adhesion	extracellular region	structural molecule activity				0						ACCGCCAGGAAGTGCTCCCCA	0.602													47	119					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45945569	45945569	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45945569C>T	uc002zfe.1	-	8	1369	c.1303G>A	c.(1303-1305)GAG>AAG	p.E435K	C21orf29_uc010gpv.1_Missense_Mutation_p.E367K	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	435	EAR 3.				cell adhesion	extracellular region	structural molecule activity				0						AGGAAGTGCTCCCCATCCACC	0.592													53	128					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45947202	45947202	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45947202G>A	uc002zfe.1	-	7	1188	c.1122C>T	c.(1120-1122)GCC>GCT	p.A374A	C21orf29_uc010gpv.1_Silent_p.A306A	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	374	EAR 2.				cell adhesion	extracellular region	structural molecule activity				0						AATGCCTCCAGGCCTGTGCTT	0.562													16	96					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45949718	45949718	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45949718C>T	uc002zfe.1	-	5	819	c.753G>A	c.(751-753)GGG>GGA	p.G251G	C21orf29_uc010gpv.1_Silent_p.G183G	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	251					cell adhesion	extracellular region	structural molecule activity				0						CTTCTGGCTTCCCCGTGAGAG	0.642													30	54					0	0	1	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959264	45959264	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45959264G>A	uc002zfh.1	-	1	815	c.770C>T	c.(769-771)TCC>TTC	p.S257F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	257	24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						GGCCTGGCAGGAGGAGGCAGG	0.726													18	50					0	0	1	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959603	45959603	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45959603G>A	uc002zfh.1	-	1	476	c.431C>T	c.(430-432)CCT>CTT	p.P144L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	144	12.|24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						GCAGCAAACAGGCACACAGCA	0.537													40	144					0	0	1	0	0
KRTAP10-2	386679	broad.mit.edu	37	21	45971094	45971094	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45971094G>A	uc002zfi.1	-	1	295	c.248C>T	c.(247-249)TCT>TTT	p.S83F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198693	NP_941966	P60368	KR102_HUMAN	keratin associated protein 10-2	83	22 X 5 AA repeats of C-C-X(3).|4.					keratin filament				large_intestine(1)	1						CTGGCAGCTAGACTGCTGGCA	0.692													15	149					0	0	1	0	0
KRTAP10-3	386682	broad.mit.edu	37	21	45978416	45978416	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45978416G>A	uc002zfj.1	-	1	228	c.183C>T	c.(181-183)GCC>GCT	p.A61A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198696	NP_941969	P60369	KR103_HUMAN	keratin associated protein 10-3	61	4.|18 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						TGGGCTCACAGGCCGCCTGGC	0.592													33	75					0	0	1	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45993752	45993752	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:45993752C>T	uc002zfk.1	+	1	147	c.117C>T	c.(115-117)CCC>CCT	p.P39P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	39	36 X 5 AA repeats of C-C-X(3).|1.					keratin filament					0						GCTGCGAGCCCCCCTGCTGCG	0.701													7	66					0	0	1	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021459	46021459	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46021459C>T	uc002zfn.3	+	2	948	c.923C>T	c.(922-924)TCC>TTC	p.S308F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	313	30 X 5 AA repeats of C-C-X(3).					keratin filament					0						CCCTCCTCCTCCGTGTCCCTC	0.692													10	118					0	0	1	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021535	46021535	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46021535C>T	uc002zfn.3	+	2	1024	c.999C>T	c.(997-999)TCC>TCT	p.S333S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	338	30 X 5 AA repeats of C-C-X(3).					keratin filament					0						CCCCCACCTCCTCCTGCCAGG	0.716													22	69					0	0	1	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032136	46032136	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46032136C>T	uc002zfo.1	+	1	141	c.119C>T	c.(118-120)TCC>TTC	p.S40F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	40	19 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|breast(1)	2						ACTGGCTCCTCCTGGCAGGTG	0.642													15	109					0	0	1	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032182	46032182	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46032182C>T	uc002zfo.1	+	1	187	c.165C>T	c.(163-165)TCC>TCT	p.S55S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	55	19 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|breast(1)	2						AGCCCCGCTCCTGTGCCTCCA	0.672													8	86					0	0	1	0	0
KRTAP10-9	386676	broad.mit.edu	37	21	46047149	46047149	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46047149G>A	uc002zfp.3	+	1	110	c.61G>A	c.(61-63)GAC>AAC	p.D21N	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	21						keratin filament					0						GCAGGTGGACGACTGCCCAGA	0.672													39	75					0	0	1	0	0
KRTAP10-9	386676	broad.mit.edu	37	21	46047502	46047502	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46047502G>A	uc002zfp.3	+	1	463	c.414G>A	c.(412-414)CCG>CCA	p.P138P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	138	25 X 5 AA repeats of C-C-X(3).					keratin filament					0						cctgccagccggcctgctgtg	0.219													35	251					0	0	1	0	0
KRTAP10-9	386676	broad.mit.edu	37	21	46047788	46047788	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46047788C>T	uc002zfp.3	+	1	749	c.700C>T	c.(700-702)CTC>TTC	p.L234F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	234	25 X 5 AA repeats of C-C-X(3).					keratin filament					0						TGTGTCCCTCCTCTGCCGCCC	0.687													32	209					0	0	1	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46066852	46066852	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46066852C>T	uc002zfr.3	+	1	522	c.477C>T	c.(475-477)TCC>TCT	p.S159S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	159	25 X 5 AA repeats of C-C-X(3).|15.					keratin filament				ovary(1)	1						GCTGTGTGTCCACCTGCTCTG	0.373													57	225					0	0	1	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46066875	46066875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46066875C>T	uc002zfr.3	+	1	545	c.500C>T	c.(499-501)TCA>TTA	p.S167L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	167	25 X 5 AA repeats of C-C-X(3).					keratin filament				ovary(1)	1						GATTCCTCTTCATGCTGCCAG	0.433													63	253					0	0	1	0	0
KRTAP12-4	386684	broad.mit.edu	37	21	46074281	46074281	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46074281G>A	uc002zfs.1	-	1	296	c.251C>T	c.(250-252)TCC>TTC	p.S84F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198698	NP_941971	P60329	KR124_HUMAN	keratin associated protein 12-4	84	15 X 5 AA approximate repeats.|12.					keratin filament				ovary(1)	1						TGGGCAGAAGGAAGCCACACA	0.647													21	43					0	0	1	0	0
KRTAP12-2	353323	broad.mit.edu	37	21	46086676	46086676	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46086676G>A	uc002zfu.2	-	1	169	c.128C>T	c.(127-129)TCC>TTC	p.S43F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181684	NP_859012	P59991	KR122_HUMAN	keratin associated protein 12-2	43	23 X 5 AA approximate repeats.|6.					keratin filament					0						CACACACACGGAGGACTGGCA	0.657													15	45					0	0	1	0	0
KRTAP12-2	353323	broad.mit.edu	37	21	46086747	46086747	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46086747G>A	uc002zfu.2	-	1	98	c.57C>T	c.(55-57)CCC>CCT	p.P19P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181684	NP_859012	P59991	KR122_HUMAN	keratin associated protein 12-2	19	23 X 5 AA approximate repeats.|2.					keratin filament					0						CTGGCTGGCAGGGGCTGGGCG	0.657													8	25					0	0	1	0	0
KRTAP12-2	353323	broad.mit.edu	37	21	46086784	46086784	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46086784G>A	uc002zfu.2	-	1	61	c.20C>T	c.(19-21)TCC>TTC	p.S7F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181684	NP_859012	P59991	KR122_HUMAN	keratin associated protein 12-2	7						keratin filament					0						GCAGCCCGAGGAGCAGCTGGT	0.667													9	16					0	0	1	0	0
KRTAP12-1	353332	broad.mit.edu	37	21	46101961	46101961	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46101961G>A	uc002zfv.2	-	1	118	c.78C>T	c.(76-78)ATC>ATT	p.I26I	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181686	NP_859014	P59990	KR121_HUMAN	keratin associated protein 12-1	26	3.|14 X 5 AA approximate repeats.					keratin filament				skin(2)	2						AGCCCACGGGGATGTAACAGG	0.667													8	95					0	0	1	0	0
KRTAP12-1	353332	broad.mit.edu	37	21	46102014	46102014	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46102014C>T	uc002zfv.2	-	1	65	c.25G>A	c.(25-27)GGC>AGC	p.G9S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181686	NP_859014	P59990	KR121_HUMAN	keratin associated protein 12-1	9						keratin filament				skin(2)	2						GGCTGGCAGCCCGAGGAGCAG	0.657													19	46					0	0	1	0	0
KRTAP10-12	386685	broad.mit.edu	37	21	46117623	46117623	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46117623C>T	uc002zfw.1	+	1	537	c.507C>T	c.(505-507)GCC>GCT	p.A169A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198699	NP_941972	P60413	KR10C_HUMAN	keratin associated protein 10-12	169	19 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCTCTGGGGCCTCCTCTCTGT	0.647													63	275					0	0	1	0	0
KRTAP10-12	386685	broad.mit.edu	37	21	46117708	46117708	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46117708C>T	uc002zfw.1	+	1	622	c.592C>T	c.(592-594)CTC>TTC	p.L198F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198699	NP_941972	P60413	KR10C_HUMAN	keratin associated protein 10-12	198	19 X 5 AA repeats of C-C-X(3).					keratin filament					0						CGTGTCCCTCCTCTGCCGCCC	0.701													50	179					0	0	1	0	0
ITGB2	3689	broad.mit.edu	37	21	46310067	46310067	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46310067C>T	uc002zgd.2	-	11	1527	c.1483G>A	c.(1483-1485)GGA>AGA	p.G495R	ITGB2_uc002zge.2_Missense_Mutation_p.G495R|ITGB2_uc002zgf.3_Missense_Mutation_p.G495R|ITGB2_uc011afl.1_Missense_Mutation_p.G417R|ITGB2_uc010gpw.2_Missense_Mutation_p.G438R|ITGB2_uc002zgg.2_Missense_Mutation_p.G495R	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	495	I.|Extracellular (Potential).|Cysteine-rich tandem repeats.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	CGGCAGCTTCCTTCCAGCTCC	0.632													12	25					0	0	1	0	0
ITGB2	3689	broad.mit.edu	37	21	46326873	46326873	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46326873C>T	uc002zgd.2	-	3	329	c.285G>A	c.(283-285)CAG>CAA	p.Q95Q	ITGB2_uc002zge.2_Silent_p.Q95Q|ITGB2_uc002zgf.3_Silent_p.Q95Q|ITGB2_uc011afl.1_Silent_p.Q17Q|ITGB2_uc010gpw.2_Silent_p.Q95Q|ITGB2_uc002zgg.2_Silent_p.Q95Q	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	95	Extracellular (Potential).				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	ACAGCTGCTTCTGGCCCCCAT	0.617													28	69					0	0	1	0	0
ITGB2	3689	broad.mit.edu	37	21	46326989	46326989	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46326989G>A	uc002zgd.2	-	3	213	c.169C>T	c.(169-171)CCT>TCT	p.P57S	ITGB2_uc002zge.2_Missense_Mutation_p.P57S|ITGB2_uc002zgf.3_Missense_Mutation_p.P57S|ITGB2_uc011afl.1_5'UTR|ITGB2_uc010gpw.2_Missense_Mutation_p.P57S|ITGB2_uc002zgg.2_Missense_Mutation_p.P57S	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	57	Extracellular (Potential).				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	ATGGAGTCAGGATCCCCCGGC	0.652													15	42					0	0	1	0	0
COL18A1	80781	broad.mit.edu	37	21	46888190	46888191	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46888190_46888191CC>TT	uc011afs.1	+	2	1407_1408	c.1386_1387CC>TT	c.(1384-1389)CTCCTT>CTTTTT	p.L463F	COL18A1_uc002zhg.2_Missense_Mutation_p.L48F|COL18A1_uc002zhi.2_Missense_Mutation_p.L228F	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	463	TSP N-terminal.				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		TGCTGCAGCTCCTTGGGGACCC	0.673													29	71					0	0	1	0	0
SLC19A1	6573	broad.mit.edu	37	21	46950876	46950876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:46950876G>A	uc002zhl.1	-	4	1078	c.959C>T	c.(958-960)ACG>ATG	p.T320M	SLC19A1_uc010gpy.1_Missense_Mutation_p.T320M|SLC19A1_uc011aft.1_Missense_Mutation_p.T280M|SLC19A1_uc002zhm.1_Missense_Mutation_p.T320M|SLC19A1_uc010gpz.1_Missense_Mutation_p.T199M	NM_194255	NP_919231	P41440	S19A1_HUMAN	solute carrier family 19 member 1	320	Helical; (Probable).				folic acid metabolic process	integral to plasma membrane|membrane fraction	folic acid binding|folic acid transporter activity|methotrexate transporter activity|reduced folate carrier activity				0				Colorectal(79;0.0569)|READ - Rectum adenocarcinoma(84;0.172)		GGCGAAGGACGTGATGGCGCC	0.692													5	14					0	0	1	0	0
PCBP3	54039	broad.mit.edu	37	21	47337533	47337533	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47337533C>T	uc002zhq.1	+	9	832	c.707C>T	c.(706-708)CCT>CTT	p.P236L	PCBP3_uc010gqb.2_Missense_Mutation_p.P236L|PCBP3_uc002zhp.1_Missense_Mutation_p.P236L|PCBP3_uc010gqc.1_Silent_p.P302P|PCBP3_uc002zhs.1_Missense_Mutation_p.P211L|PCBP3_uc002zhr.1_Missense_Mutation_p.P236L|PCBP3_uc002zht.1_Missense_Mutation_p.P227L	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	236					mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		TATGCCATCCCTCACCCGGAT	0.527													36	77					0	0	1	0	0
PCBP3	54039	broad.mit.edu	37	21	47350726	47350726	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47350726G>A	uc002zhq.1	+	11	948	c.823G>A	c.(823-825)GAA>AAA	p.E275K	PCBP3_uc010gqb.2_Missense_Mutation_p.E275K|PCBP3_uc002zhp.1_Intron|PCBP3_uc002zhs.1_Missense_Mutation_p.E249K|PCBP3_uc002zhr.1_Missense_Mutation_p.E274K|PCBP3_uc002zht.1_Missense_Mutation_p.E265K	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	275					mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		acactcctccgaagaagctca	0.199													14	42					0	0	1	0	0
COL6A1	1291	broad.mit.edu	37	21	47406492	47406492	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47406492C>T	uc002zhu.1	+	4	583	c.481C>T	c.(481-483)CCC>TCC	p.P161S		NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	161	VWFA 1.|N-terminal globular domain.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	CGACGGGCACCCCCTGGAGGG	0.617													3	6					0	0	1	0	0
COL6A1	1291	broad.mit.edu	37	21	47422304	47422305	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47422304_47422305CC>TT	uc002zhu.1	+	32	2341_2342	c.2239_2240CC>TT	c.(2239-2241)CCC>TTC	p.P747F	COL6A1_uc010gqd.1_Missense_Mutation_p.P78F|COL6A1_uc002zhv.1_Missense_Mutation_p.P78F|COL6A1_uc002zhw.1_5'Flank	NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	747	VWFA 2.|C-terminal globular domain.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	GCTCTGCAGCCCCGGCATCCAG	0.703													4	7					0	0	1	0	0
COL6A1	1291	broad.mit.edu	37	21	47423320	47423320	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47423320C>T	uc002zhu.1	+	35	2582	c.2480C>T	c.(2479-2481)CCG>CTG	p.P827L	COL6A1_uc010gqd.1_Missense_Mutation_p.P158L|COL6A1_uc002zhv.1_Missense_Mutation_p.P158L|COL6A1_uc002zhw.1_5'UTR	NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	827	C-terminal globular domain.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	TTCTCCTCCCCGGCTGACATC	0.677													7	62					0	0	1	0	0
COL6A2	1292	broad.mit.edu	37	21	47532341	47532341	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47532341C>T	uc002zia.1	+	3	646	c.564C>T	c.(562-564)TTC>TTT	p.F188F	COL6A2_uc002zhy.1_Silent_p.F188F|COL6A2_uc002zhz.1_Silent_p.F188F|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	188	VWFA 1.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		TCCGGCTCTTCGCCGTGGCCC	0.706													5	20					0	0	1	0	0
COL6A2	1292	broad.mit.edu	37	21	47532724	47532724	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47532724G>A	uc002zia.1	+	4	803	c.721G>A	c.(721-723)GAA>AAA	p.E241K	COL6A2_uc002zhy.1_Missense_Mutation_p.E241K|COL6A2_uc002zhz.1_Missense_Mutation_p.E241K|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	241	Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GCAGAAACACGAAGCCTACGG	0.642													13	71					0	0	1	0	0
COL6A2	1292	broad.mit.edu	37	21	47538583	47538583	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47538583G>A	uc002zia.1	+	13	1254	c.1172G>A	c.(1171-1173)GGA>GAA	p.G391E	COL6A2_uc002zhy.1_Missense_Mutation_p.G391E|COL6A2_uc002zhz.1_Missense_Mutation_p.G391E|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	391	Triple-helical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GGGGCCAAGGGAAGCAAGGTG	0.642													6	14					0	0	1	0	0
COL6A2	1292	broad.mit.edu	37	21	47545985	47545985	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47545985C>A	uc002zia.1	+	26	2338	c.2256C>A	c.(2254-2256)GTC>GTA	p.V752V	COL6A2_uc002zhy.1_Silent_p.V752V|COL6A2_uc002zhz.1_Silent_p.V752V|COL6A2_uc002zib.1_Silent_p.V158V|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	752	VWFA 2.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		ACCGCGACGTCACAGTGACGG	0.627													57	153					9.59449e-18	9.64344e-18	1	1	0
LSS	4047	broad.mit.edu	37	21	47636337	47636337	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47636337G>A	uc002zij.2	-	7	828	c.749C>T	c.(748-750)GCC>GTC	p.A250V	LSS_uc011afv.1_Missense_Mutation_p.A239V|LSS_uc002zil.2_Missense_Mutation_p.A250V|LSS_uc002zik.2_Missense_Mutation_p.A170V	NM_001001438	NP_001001438	P48449	ERG7_HUMAN	lanosterol synthase isoform 1	250					cholesterol biosynthetic process	endoplasmic reticulum membrane	lanosterol synthase activity				0	Breast(49;0.214)					GTCTTCCGCGGCACTCAGCCG	0.652													14	57					0	0	1	0	0
MCM3AP	8888	broad.mit.edu	37	21	47692738	47692738	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47692738G>A	uc002zir.1	-	8	2238	c.2202C>T	c.(2200-2202)ATC>ATT	p.I734I		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	734					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					GCTGCTGCGTGATATCCTGGC	0.547													27	56					0	0	1	0	0
PCNT	5116	broad.mit.edu	37	21	47786986	47786986	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47786986C>T	uc002zji.3	+	15	3204	c.3097C>T	c.(3097-3099)CAC>TAC	p.H1033Y	PCNT_uc002zjj.2_Missense_Mutation_p.H915Y	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1033	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TGTGCGGGACCACCTGCGAAC	0.587													28	81					0	0	1	0	0
DIP2A	23181	broad.mit.edu	37	21	47981665	47981665	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:47981665C>T	uc002zjo.2	+	34	4219	c.4036C>T	c.(4036-4038)CGT>TGT	p.R1346C	DIP2A_uc011afz.1_Missense_Mutation_p.R1342C|DIP2A_uc002zjs.2_Missense_Mutation_p.R26C|DIP2A_uc002zjt.2_5'Flank	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	1346					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		TTTTAGGGTTCGTTTGGTAGA	0.458													33	130					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16279296	16279296	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:16279296G>A	uc010gqp.2	-	4	979	c.927C>T	c.(925-927)GGC>GGT	p.G309G	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.G28G|POTEH_uc002zlj.1_Silent_p.G144G	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	309	ANK 5.									skin(1)	1						GTGGTGTGAGGCCATGCTGTA	0.323													22	341					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16287329	16287329	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:16287329C>T	uc010gqp.2	-	1	609	c.557G>A	c.(556-558)TGG>TAG	p.W186*	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_5'UTR|POTEH_uc002zlj.1_Nonsense_Mutation_p.W21*	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	186	ANK 1.									skin(1)	1						GACTTTACCCCACCAGGCAGC	0.557													26	107					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16287591	16287591	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:16287591C>T	uc010gqp.2	-	1	347	c.295G>A	c.(295-297)GGC>AGC	p.G99S	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	99										skin(1)	1						CACCACTTGCCCATCTTGCTC	0.602													88	396					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16287627	16287627	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:16287627C>T	uc010gqp.2	-	1	311	c.259G>A	c.(259-261)GAC>AAC	p.D87N	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	87										skin(1)	1						GCAGAATCGTCGTGGTCTCCA	0.597													54	374					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16287712	16287712	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:16287712C>T	uc010gqp.2	-	1	226	c.174G>A	c.(172-174)AGG>AGA	p.R58R	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	58										skin(1)	1						CCATCTTGCTCCTGAGTGTCT	0.607													65	368					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16287790	16287790	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:16287790G>A	uc010gqp.2	-	1	148	c.96C>T	c.(94-96)TTC>TTT	p.F32F	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	32										skin(1)	1						TGCACCAGGCGAAGCAGTGGC	0.582													93	264					0	0	1	0	0
OR11H1	81061	broad.mit.edu	37	22	16449127	16449127	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:16449127G>A	uc011agd.1	-	1	678	c.678C>T	c.(676-678)TTC>TTT	p.F226F		NM_001005239	NP_001005239	Q8NG94	O11H1_HUMAN	olfactory receptor, family 11, subfamily H,	226	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.208)		Kidney(3;0.00216)|KIRC - Kidney renal clear cell carcinoma(3;0.00244)|Lung(27;0.0724)|COAD - Colon adenocarcinoma(3;0.211)		TAATAAAGAGGAAGTTACCAA	0.433													56	119					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17071818	17071818	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17071818C>T	uc002zlp.1	-	1	1883	c.1623G>A	c.(1621-1623)AAG>AAA	p.K541K		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	541					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GTGGGTGTTTCTTTGTCTTCT	0.443													36	145					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072095	17072095	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17072095G>A	uc002zlp.1	-	1	1606	c.1346C>T	c.(1345-1347)CCT>CTT	p.P449L		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	449					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CAAAGTTTTAGGAAGATACTT	0.498													35	116					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072199	17072199	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17072199G>A	uc002zlp.1	-	1	1502	c.1242C>T	c.(1240-1242)GCC>GCT	p.A414A		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	414					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CCATTTCTGTGGCCCCAGCTC	0.547													25	60					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072209	17072209	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17072209C>T	uc002zlp.1	-	1	1492	c.1232G>A	c.(1231-1233)GGA>GAA	p.G411E		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	411					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GGCCCCAGCTCCTGGAATCAG	0.562													28	54					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072451	17072451	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17072451C>T	uc002zlp.1	-	1	1250	c.990G>A	c.(988-990)TTG>TTA	p.L330L		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	330					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GAGGTGTGTCCAACACCTCAC	0.567													48	146					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072540	17072540	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17072540C>T	uc002zlp.1	-	1	1161	c.901G>A	c.(901-903)GAG>AAG	p.E301K		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	301					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AGGGTCTCCTCGTCGACCTCC	0.493													81	168					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072667	17072667	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17072667C>T	uc002zlp.1	-	1	1034	c.774G>A	c.(772-774)ACG>ACA	p.T258T		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	258					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AAAGACGGGCCGTTGCTGGTG	0.507													40	96					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072763	17072763	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17072763C>T	uc002zlp.1	-	1	938	c.678G>A	c.(676-678)GGG>GGA	p.G226G		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	226					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CACAGAGCTTCCCAGATATTG	0.607													12	97					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072864	17072864	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17072864C>T	uc002zlp.1	-	1	837	c.577G>A	c.(577-579)GAA>AAA	p.E193K		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	193					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CCGTCTAGTTCCTTGATAGCC	0.612													27	72					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073116	17073116	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17073116C>T	uc002zlp.1	-	1	585	c.325G>A	c.(325-327)GTT>ATT	p.V109I		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	109					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GTCAGCAGAACCACGAAGGCT	0.657													19	64					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073120	17073120	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17073120G>A	uc002zlp.1	-	1	581	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	107					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GCAGAACCACGAAGGCTGTGC	0.662													20	64					0	0	1	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17119552	17119552	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17119552C>T	uc002zls.1	+	2		c.389C>T			psiTPTE22_uc002zlr.2_RNA|psiTPTE22_uc002zlt.2_RNA					Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						CTTTATATTCCTTCGGAGTAT	0.333													24	80					0	0	1	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17119611	17119611	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17119611C>T	uc002zls.1	+	2		c.448C>T			psiTPTE22_uc002zlr.2_RNA|psiTPTE22_uc002zlt.2_RNA					Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						GGATGTTCTTCTTCGAGTATT	0.274													21	48					0	0	1	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17178407	17178407	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17178407G>A	uc002zls.1	+	3		c.489G>A								Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						CGCTCAGCACGAAGGCCTTGT	0.597													25	21					0	0	1	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17178622	17178622	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17178622G>A	uc002zls.1	+	3		c.704G>A								Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						CTGATGATTTGGAACAGTGTG	0.622													12	27					0	0	1	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17178965	17178965	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17178965C>T	uc002zls.1	+	3		c.1047C>T								Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						TGGTGGGGCTCACCGGGGCAT	0.587													7	24					0	0	1	0	0
GAB4	128954	broad.mit.edu	37	22	17444715	17444716	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17444715_17444716GG>AA	uc002zlw.2	-	9	1588_1589	c.1480_1481CC>TT	c.(1480-1482)CCG>TTG	p.P494L		NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	494										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				TGCAGATGCCGGGTTCTGCTGT	0.594													15	44					0	0	1	0	0
GAB4	128954	broad.mit.edu	37	22	17446114	17446114	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17446114C>T	uc002zlw.2	-	7	1441	c.1333G>A	c.(1333-1335)GAG>AAG	p.E445K		NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	445										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				AAGGAGAGCTCATTGATGACC	0.567													8	40					0	0	1	0	0
GAB4	128954	broad.mit.edu	37	22	17446124	17446125	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17446124_17446125CC>AT	uc002zlw.2	-	7	1430_1431	c.1322_1323GG>AT	c.(1321-1323)AGG>AAT	p.R441N		NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	441										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				CATTGATGACCCTGTTGTTTCT	0.554													10	37					0	0	1	0	0
GAB4	128954	broad.mit.edu	37	22	17468993	17468993	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17468993G>A	uc002zlw.2	-	3	651	c.543C>T	c.(541-543)TGC>TGT	p.C181C	GAB4_uc010gqs.1_Silent_p.C164C	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	181										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				GCTGATGGGAGCAGCTGGGCT	0.607													13	21					0	0	1	0	0
GAB4	128954	broad.mit.edu	37	22	17488851	17488851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17488851C>T	uc002zlw.2	-	1	262	c.154G>A	c.(154-156)GAG>AAG	p.E52K	GAB4_uc010gqs.1_Missense_Mutation_p.E52K	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	52	PH.									large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				AGCTTCTTCTCGGGGGGCGAC	0.687													6	14					0	0	1	0	0
IL17RA	23765	broad.mit.edu	37	22	17578719	17578719	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17578719C>T	uc002zly.2	+	3	329	c.196C>T	c.(196-198)CGA>TGA	p.R66*	IL17RA_uc010gqt.2_Nonsense_Mutation_p.R66*	NM_014339	NP_055154	Q96F46	I17RA_HUMAN	interleukin 17A receptor precursor	66	Extracellular (Potential).				fibroblast activation|positive regulation of interleukin-23 production	integral to plasma membrane	interleukin-17 receptor activity			skin(2)	2		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.241)		GATTCACCCTCGAAACCTGAC	0.577													21	48					0	0	1	0	0
CECR5	27440	broad.mit.edu	37	22	17624020	17624020	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17624020G>A	uc002zmf.2	-	5	567	c.539C>T	c.(538-540)CCC>CTC	p.P180L	CECR5_uc002zmd.2_5'Flank|CECR5_uc002zme.2_Intron|CECR5_uc002zmg.2_Missense_Mutation_p.P43L|CECR5_uc002zmh.2_Missense_Mutation_p.P150L	NM_033070	NP_149061	Q9BXW7	CECR5_HUMAN	cat eye syndrome chromosome region, candidate 5	180							hydrolase activity				0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)				CCTCGGGAGGGGCTGCAGAGA	0.577													10	45					0	0	1	0	0
CECR5	27440	broad.mit.edu	37	22	17630511	17630511	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17630511G>A	uc002zmf.2	-	2	279	c.251C>T	c.(250-252)CCC>CTC	p.P84L	CECR5_uc002zme.2_5'Flank|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Missense_Mutation_p.P54L	NM_033070	NP_149061	Q9BXW7	CECR5_HUMAN	cat eye syndrome chromosome region, candidate 5	84							hydrolase activity				0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)				AAAAACCACGGGCACCCGCAG	0.587													63	121					0	0	1	0	0
CECR2	27443	broad.mit.edu	37	22	17990868	17990868	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:17990868G>A	uc010gqw.1	+	7	894	c.768G>A	c.(766-768)AAG>AAA	p.K256K	CECR2_uc010gqv.1_Silent_p.K135K|CECR2_uc002zml.2_Silent_p.K135K|CECR2_uc002zmm.1_Intron	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	298					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		AGCGCACAAAGGCAGAGTTGC	0.493													14	174					0	0	1	0	0
CECR2	27443	broad.mit.edu	37	22	18021541	18021541	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:18021541C>T	uc010gqw.1	+	14	1958	c.1832C>T	c.(1831-1833)CCA>CTA	p.P611L	CECR2_uc010gqv.1_Missense_Mutation_p.P470L|CECR2_uc002zml.2_Missense_Mutation_p.P470L	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	653					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CCAGCAGTACCAGGAACATTT	0.542													24	38					0	0	1	0	0
SLC25A18	83733	broad.mit.edu	37	22	18070755	18070755	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:18070755G>A	uc002zmp.1	+	9	1134	c.640G>A	c.(640-642)GAG>AAG	p.E214K	SLC25A18_uc010gqx.2_Missense_Mutation_p.E214K|SLC25A18_uc002zmq.1_Missense_Mutation_p.E214K	NM_031481	NP_113669	Q9H1K4	GHC2_HUMAN	solute carrier	214						integral to membrane|mitochondrial inner membrane	binding|symporter activity				0				Lung(27;0.124)	L-Glutamic Acid(DB00142)	GGGGTTCAACGAGCTCGCCGG	0.532													47	101					0	0	1	0	0
MICAL3	57553	broad.mit.edu	37	22	18300136	18300136	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:18300136G>A	uc002zng.3	-	26	5644	c.5291C>T	c.(5290-5292)CCC>CTC	p.P1764L	MICAL3_uc011agl.1_Missense_Mutation_p.P1680L|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1764						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		CCCGCTGGAGGGGGTGCTGGG	0.652													7	21					0	0	1	0	0
MICAL3	57553	broad.mit.edu	37	22	18300147	18300147	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:18300147G>A	uc002zng.3	-	26	5633	c.5280C>T	c.(5278-5280)TGC>TGT	p.C1760C	MICAL3_uc011agl.1_Silent_p.C1676C|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1760						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GGGTGCTGGGGCAGGACTTGT	0.637													15	17					0	0	1	0	0
MICAL3	57553	broad.mit.edu	37	22	18384706	18384706	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:18384706G>A	uc002zng.3	-	5	982	c.629C>T	c.(628-630)CCT>CTT	p.P210L	MICAL3_uc011agl.1_Missense_Mutation_p.P210L|MICAL3_uc002znh.2_Missense_Mutation_p.P210L|MICAL3_uc002znj.1_5'UTR|MICAL3_uc002znk.1_Missense_Mutation_p.P210L|MICAL3_uc002znl.1_5'UTR|MICAL3_uc010grf.2_Missense_Mutation_p.P210L|MICAL3_uc011agm.1_Missense_Mutation_p.P210L	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	210						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		CTCTGACACAGGATGAGTCTT	0.537													13	26					0	0	1	0	0
PEX26	55670	broad.mit.edu	37	22	18562684	18562684	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:18562684C>T	uc002znp.3	+	3	484	c.275C>T	c.(274-276)GCC>GTC	p.A92V	TUBA8_uc002znr.2_5'UTR|PEX26_uc002znq.3_Missense_Mutation_p.A92V|uc002zns.2_5'Flank|PEX26_uc002znt.2_Missense_Mutation_p.A92V	NM_017929	NP_060399	Q7Z412	PEX26_HUMAN	peroxisome biogenesis factor 26	92	Cytoplasmic (Potential).				protein import into peroxisome matrix|protein import into peroxisome membrane	integral to peroxisomal membrane	protein C-terminus binding|protein complex binding			skin(1)	1						GGGATCCAGGCCCTGGCAGAA	0.522													34	107					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	18844988	18844988	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:18844988C>T	uc002zoe.2	+	4		c.2242C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GCAGCGGCCTCCTTGAAGATC	0.572													9	38					0	0	1	0	0
DGCR6	8214	broad.mit.edu	37	22	18897764	18897764	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:18897764G>A	uc002zoh.3	+	3	503	c.351G>A	c.(349-351)GCG>GCA	p.A117A	DGCR6_uc002zog.2_RNA|DGCR6_uc002zoi.3_RNA	NM_005675	NP_005666	Q14129	DGCR6_HUMAN	DiGeorge syndrome critical region protein 6	117	Potential.				cell adhesion|organ morphogenesis	nucleus|proteinaceous extracellular matrix				upper_aerodigestive_tract(1)|central_nervous_system(1)	2						TGCTTCAGGCGGCTCAGCAGC	0.672													4	15					0	0	1	0	0
PRODH	5625	broad.mit.edu	37	22	18909852	18909852	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:18909852G>A	uc010grl.2	-	7	929	c.915C>T	c.(913-915)ACC>ACT	p.T305T	PRODH_uc002zoj.3_Silent_p.T195T|PRODH_uc002zol.3_Silent_p.T195T|PRODH_uc002zok.3_Silent_p.T305T	NM_016335	NP_057419	O43272	PROD_HUMAN	proline dehydrogenase 1	305					glutamate biosynthetic process|induction of apoptosis by oxidative stress|proline catabolic process	mitochondrial inner membrane|mitochondrial matrix	proline dehydrogenase activity			breast(1)	1					L-Proline(DB00172)	ACACTCCCAGGGTCTCTGCCG	0.602													7	31					0	0	1	0	0
DGCR14	8220	broad.mit.edu	37	22	19125809	19125809	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19125809G>A	uc002zou.2	-	7	881	c.844C>T	c.(844-846)CCC>TCC	p.P282S	DGCR14_uc002zot.2_Missense_Mutation_p.P203S|DGCR14_uc002zov.2_Intron	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	282					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					TTGCCATCGGGGCCCACCTTG	0.627													10	28					0	0	1	0	0
CLTCL1	8218	broad.mit.edu	37	22	19178917	19178917	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19178917G>A	uc002zpb.2	-	28	4297	c.4222C>T	c.(4222-4224)CTG>TTG	p.L1408L	CLTCL1_uc011agv.1_Silent_p.L1408L|CLTCL1_uc011agw.1_Silent_p.L1387L|CLTCL1_uc011agt.1_Silent_p.L199L|CLTCL1_uc011agu.1_Silent_p.L199L	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1408	Involved in binding clathrin light chain (By similarity).|Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					TAGAACTGCAGGGCTCTGTAA	0.502			T	?	ALCL								40	74					0	0	1	0	0
HIRA	7290	broad.mit.edu	37	22	19375254	19375254	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19375254G>A	uc002zpf.1	-	11	1313	c.1093C>T	c.(1093-1095)CCC>TCC	p.P365S	HIRA_uc011agx.1_Missense_Mutation_p.P231S|HIRA_uc010grn.1_Missense_Mutation_p.P365S|HIRA_uc010gro.1_Missense_Mutation_p.P321S|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	365	WD 7.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					TCGCTCAGGGGATCGCCAAGC	0.572													9	23					0	0	1	0	0
CDC45	8318	broad.mit.edu	37	22	19506390	19506390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19506390C>T	uc002zpr.2	+	18	1736	c.1660C>T	c.(1660-1662)CGG>TGG	p.R554W	CDC45_uc011aha.1_Missense_Mutation_p.R586W|CDC45_uc002zps.2_Missense_Mutation_p.R555W|CDC45_uc002zpt.2_Missense_Mutation_p.R508W	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	554					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						AGCTGAGGATCGGAGCAAGTT	0.552													43	138					0	0	1	0	0
SEPT5	5413	broad.mit.edu	37	22	19707966	19707966	+	Silent	SNP	C	T	T	rs148378941		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19707966C>T	uc002zpv.1	+	6	611	c.486C>T	c.(484-486)CCC>CCT	p.P162P	SEPT5_uc002zpw.1_RNA|SEPT5_uc002zpx.1_RNA|SEPT5_uc002zpy.1_5'Flank	NM_002688	NP_002679	Q99719	SEPT5_HUMAN	septin 5	162					cell cycle|cytokinesis|regulation of exocytosis|synaptic vesicle targeting	plasma membrane|septin complex|synaptic vesicle	GTP binding|GTPase activity|protein binding|structural molecule activity			lung(1)	1	Colorectal(54;0.0993)					TCATCTCCCCCTTCGGGCATG	0.597													22	59					0	0	1	0	0
SEPT5	5413	broad.mit.edu	37	22	19709226	19709226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19709226C>T	uc002zpv.1	+	9	906	c.781C>T	c.(781-783)CGG>TGG	p.R261W	SEPT5_uc002zpw.1_RNA|SEPT5_uc002zpx.1_RNA|SEPT5_uc002zpy.1_5'UTR|SEPT5_uc002zpz.1_5'Flank	NM_002688	NP_002679	Q99719	SEPT5_HUMAN	septin 5	261					cell cycle|cytokinesis|regulation of exocytosis|synaptic vesicle targeting	plasma membrane|septin complex|synaptic vesicle	GTP binding|GTPase activity|protein binding|structural molecule activity			lung(1)	1	Colorectal(54;0.0993)					GCAGCGGGTCCGGGGCCGACT	0.677													42	65					0	0	1	0	0
TBX1	6899	broad.mit.edu	37	22	19752564	19752564	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19752564C>T	uc002zqb.2	+	6	897	c.768C>T	c.(766-768)GCC>GCT	p.A256A	TBX1_uc002zqa.1_Silent_p.A256A|TBX1_uc002zqc.2_Silent_p.A256A	NM_080646	NP_542377	O43435	TBX1_HUMAN	T-box 1 isoform A	256	T-box.				embryonic viscerocranium morphogenesis|heart development|parathyroid gland development|pharyngeal system development|regulation of transcription from RNA polymerase II promoter|soft palate development|thymus development	nucleus	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)	2	Colorectal(54;0.0993)	all_lung(157;3.05e-06)				AGAAATATGCCGAGGAGAACT	0.542													39	102					0	0	1	0	0
C22orf29	79680	broad.mit.edu	37	22	19838896	19838896	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19838896G>A	uc002zqg.2	-	2	1488	c.889C>T	c.(889-891)CCC>TCC	p.P297S	GNB1L_uc002zqd.1_Intron|GNB1L_uc002zqe.1_Intron|GNB1L_uc002zqf.1_Intron|C22orf29_uc002zqh.2_Missense_Mutation_p.P297S|C22orf29_uc002zqi.2_Missense_Mutation_p.P297S|C22orf29_uc010grt.1_Intron	NM_024627	NP_078903	Q7L3V2	CV029_HUMAN	hypothetical protein LOC79680	297	Pro-rich.										0	Colorectal(54;0.0993)					ACAGGTGTGGGGGCTGCCTCC	0.612													22	37					0	0	1	0	0
C22orf29	79680	broad.mit.edu	37	22	19839242	19839242	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19839242G>A	uc002zqg.2	-	2	1142	c.543C>T	c.(541-543)GAC>GAT	p.D181D	GNB1L_uc002zqd.1_Intron|GNB1L_uc002zqe.1_Intron|GNB1L_uc002zqf.1_Intron|C22orf29_uc002zqh.2_Silent_p.D181D|C22orf29_uc002zqi.2_Silent_p.D181D|C22orf29_uc010grt.1_Intron	NM_024627	NP_078903	Q7L3V2	CV029_HUMAN	hypothetical protein LOC79680	181											0	Colorectal(54;0.0993)					AACTGTTCGGGTCTTGAACAA	0.617													8	95					0	0	1	0	0
TXNRD2	10587	broad.mit.edu	37	22	19865928	19865928	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:19865928G>A	uc011ahc.1	-	15	1341	c.1308C>T	c.(1306-1308)TTC>TTT	p.F436F	TXNRD2_uc002zql.1_Silent_p.F190F|TXNRD2_uc002zqm.1_RNA|TXNRD2_uc002zqn.1_RNA|TXNRD2_uc002zqo.1_RNA|TXNRD2_uc002zqp.1_RNA|TXNRD2_uc002zqr.1_Silent_p.F435F|TXNRD2_uc002zqj.1_RNA|TXNRD2_uc002zqq.1_Silent_p.F86F	NM_006440	NP_006431	Q9NNW7	TRXR2_HUMAN	thioredoxin reductase 2 precursor	436					cell redox homeostasis|response to oxygen radical	mitochondrion	flavin adenine dinucleotide binding|NADP binding|thioredoxin-disulfide reductase activity			ovary(2)	2	Colorectal(54;0.0993)					CAGCCACCGTGAACTCCAGTG	0.562													78	170					0	0	1	0	0
C22orf25	128989	broad.mit.edu	37	22	20043519	20043519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20043519C>T	uc010grw.1	+	7	771	c.434C>T	c.(433-435)CCT>CTT	p.P145L	C22orf25_uc002zrb.1_Intron|C22orf25_uc002zrc.1_Missense_Mutation_p.P145L|C22orf25_uc002zrd.1_Missense_Mutation_p.P111L|C22orf25_uc002zre.2_3'UTR|C22orf25_uc010grx.2_5'UTR|C22orf25_uc011ahe.1_RNA|C22orf25_uc011ahf.1_Intron|C22orf25_uc011ahg.1_Missense_Mutation_p.P186L|C22orf25_uc002zrg.2_Missense_Mutation_p.P186L|C22orf25_uc011ahh.1_Missense_Mutation_p.P145L|C22orf25_uc002zrf.2_Intron|C22orf25_uc011ahi.1_Missense_Mutation_p.P47L|C22orf25_uc010gry.1_RNA|C22orf25_uc002zrh.1_Missense_Mutation_p.P47L	NM_152906	NP_690870	Q6ICL3	CV025_HUMAN	hypothetical protein LOC128989	145											0	Colorectal(54;0.0533)					GAGCCTGATCCTATCGTTTTG	0.567													20	36					0	0	1	0	0
DGCR8	54487	broad.mit.edu	37	22	20073517	20073517	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20073517C>T	uc002zri.2	+	2	381	c.31C>T	c.(31-33)CCG>TCG	p.P11S	DGCR8_uc010grz.2_Missense_Mutation_p.P11S|MIR1306_hsa-mir-1306|MI0006443_5'Flank|DGCR8_uc002zrj.2_5'Flank	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	11	Necessary for nuclear localization and retention.|Necessary for interaction with NCL.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					CTCTCCGCTCCCGTGTGGGCC	0.557													60	112					0	0	1	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20129011	20129011	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20129011C>T	uc002zrq.2	+	9	1189	c.1083C>T	c.(1081-1083)TTC>TTT	p.F361F	ZDHHC8_uc002zrr.1_Silent_p.F361F|ZDHHC8_uc010gsa.2_Silent_p.F167F	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	361	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					GGCCGGCTTTCCCCACGGGTC	0.657													9	31					0	0	1	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20130613	20130613	+	Missense_Mutation	SNP	C	T	T	rs140830467		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20130613C>T	uc002zrq.2	+	10	1566	c.1460C>T	c.(1459-1461)TCG>TTG	p.S487L	ZDHHC8_uc002zrr.1_Missense_Mutation_p.S487L|ZDHHC8_uc010gsa.2_Missense_Mutation_p.S293L	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	487	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					AATCCTGGCTCGCCTGGTGGC	0.697													21	51					0	0	1	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20130761	20130761	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20130761C>T	uc002zrq.2	+	10	1714	c.1608C>T	c.(1606-1608)CCC>CCT	p.P536P	ZDHHC8_uc002zrr.1_Silent_p.P536P|ZDHHC8_uc010gsa.2_Silent_p.P342P	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	536	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					CCCGGGAGCCCTCGCCTGTGC	0.706													15	26					0	0	1	0	0
ZNF74	7625	broad.mit.edu	37	22	20760277	20760277	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20760277C>T	uc010gsm.2	+	6	1166	c.954C>T	c.(952-954)TCC>TCT	p.S318S	ZNF74_uc002zsg.2_Silent_p.S247S|ZNF74_uc002zsh.2_Silent_p.S318S|ZNF74_uc002zsi.2_Silent_p.S247S|ZNF74_uc010gsn.2_Silent_p.S247S	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	318	C2H2-type 3.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GCCACTCGTCCCTCAACGTGC	0.657													35	79					0	0	1	0	0
ZNF74	7625	broad.mit.edu	37	22	20760771	20760771	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20760771C>T	uc010gsm.2	+	6	1660	c.1448C>T	c.(1447-1449)TCC>TTC	p.S483F	ZNF74_uc002zsg.2_Missense_Mutation_p.S412F|ZNF74_uc002zsh.2_Missense_Mutation_p.S483F|ZNF74_uc002zsi.2_Missense_Mutation_p.S412F|ZNF74_uc010gsn.2_Missense_Mutation_p.S412F	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	483	C2H2-type 9.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GCCTTCAGCTCCCACGCCTAC	0.637													28	90					0	0	1	0	0
ZNF74	7625	broad.mit.edu	37	22	20760871	20760871	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20760871C>T	uc010gsm.2	+	6	1760	c.1548C>T	c.(1546-1548)ATC>ATT	p.I516I	ZNF74_uc002zsg.2_Silent_p.I445I|ZNF74_uc002zsh.2_Silent_p.I516I|ZNF74_uc002zsi.2_Silent_p.I445I|ZNF74_uc010gsn.2_Silent_p.I445I	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	516	C2H2-type 10.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			CGTCCCTCATCGTGCACCAGC	0.592													32	98					0	0	1	0	0
ZNF74	7625	broad.mit.edu	37	22	20761100	20761100	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20761100C>T	uc010gsm.2	+	6	1989	c.1777C>T	c.(1777-1779)CTC>TTC	p.L593F	ZNF74_uc002zsg.2_Missense_Mutation_p.L522F|ZNF74_uc002zsh.2_Missense_Mutation_p.L593F|ZNF74_uc002zsi.2_Missense_Mutation_p.L522F|ZNF74_uc010gsn.2_Missense_Mutation_p.L522F	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	593					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			caaacacctgctcagcacata	0.373													7	60					0	0	1	0	0
SCARF2	91179	broad.mit.edu	37	22	20779730	20779730	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20779730G>A	uc002zsj.1	-	11	2653	c.2548C>T	c.(2548-2550)CCG>TCG	p.P850S	SCARF2_uc002zsk.1_Missense_Mutation_p.P845S	NM_153334	NP_699165	Q96GP6	SREC2_HUMAN	scavenger receptor class F, member 2 isoform 1	846	Pro-rich.|Cytoplasmic (Potential).				cell adhesion	integral to membrane	protein binding|receptor activity			breast(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			TTGCGCGGCGGCTTCTGGATG	0.756													5	16					0	0	1	0	0
SCARF2	91179	broad.mit.edu	37	22	20780149	20780149	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20780149G>A	uc002zsj.1	-	11	2234	c.2129C>T	c.(2128-2130)TCG>TTG	p.S710L	SCARF2_uc002zsk.1_Missense_Mutation_p.S705L	NM_153334	NP_699165	Q96GP6	SREC2_HUMAN	scavenger receptor class F, member 2 isoform 1	705	Pro-rich.|Cytoplasmic (Potential).				cell adhesion	integral to membrane	protein binding|receptor activity			breast(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			CGTATGCGCCGATTTGTCGCT	0.741													9	13					0	0	1	0	0
KLHL22	84861	broad.mit.edu	37	22	20819666	20819666	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20819666G>A	uc002zsl.1	-	4	700	c.591C>T	c.(589-591)TAC>TAT	p.Y197Y	KLHL22_uc011ahr.1_Silent_p.Y54Y|KLHL22_uc002zsm.1_Silent_p.Y197Y	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	197					cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			TGAGGAGGGAGTAGACCTTCT	0.557													25	44					0	0	1	0	0
KLHL22	84861	broad.mit.edu	37	22	20825709	20825709	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20825709G>A	uc002zsl.1	-	3	430	c.321C>T	c.(319-321)TTC>TTT	p.F107F	KLHL22_uc011ahr.1_Intron|KLHL22_uc002zsm.1_Silent_p.F107F	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	107	BTB.				cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			AGGTGTATATGAAATGTAGGA	0.512													45	84					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	20977088	20977088	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:20977088C>T	uc002zsv.2	-	5		c.1447G>A								Homo sapiens, clone IMAGE:5171202, mRNA.																		ACAAGGACACCATCCAGGCTG	0.582													7	9					0	0	1	0	0
SERPIND1	3053	broad.mit.edu	37	22	21141196	21141196	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21141196G>A	uc002ztb.1	+	5	1409	c.1342G>A	c.(1342-1344)GAA>AAA	p.E448K	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Missense_Mutation_p.E476K	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	448					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	AGTGAACGAGGAAGGCACCCA	0.527													41	115					0	0	1	0	0
PI4KA	5297	broad.mit.edu	37	22	21157582	21157582	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21157582G>A	uc002zsz.3	-	13	1545	c.1314C>T	c.(1312-1314)TTC>TTT	p.F438F	PI4KA_uc010gsq.1_Silent_p.F496F	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	438					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			CCACCACCGGGAACCTCTCGC	0.587													27	67					0	0	1	0	0
PI4KA	5297	broad.mit.edu	37	22	21165309	21165309	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21165309G>A	uc002zsz.3	-	9	1074	c.843C>T	c.(841-843)ATC>ATT	p.I281I	PI4KA_uc010gsq.1_Silent_p.I339I	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	281					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			CCTCCTCAACGATCTTCTTCA	0.458													35	85					0	0	1	0	0
AIFM3	150209	broad.mit.edu	37	22	21328398	21328398	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21328398C>T	uc002ztj.2	+	5	620	c.402C>T	c.(400-402)TGC>TGT	p.C134C	AIFM3_uc002ztk.2_Silent_p.C134C|AIFM3_uc002ztl.2_Silent_p.C140C|AIFM3_uc011ahx.1_Silent_p.C122C|AIFM3_uc002ztm.1_5'Flank	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,	134	Rieske.				activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			ACGGCGCCTGCTTCAACATCA	0.662													10	21					0	0	1	0	0
AIFM3	150209	broad.mit.edu	37	22	21333929	21333929	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21333929C>T	uc002ztj.2	+	18	1808	c.1590C>T	c.(1588-1590)GGC>GGT	p.G530G	AIFM3_uc002ztk.2_Silent_p.G530G|AIFM3_uc002ztl.2_Silent_p.G536G|AIFM3_uc011ahx.1_Silent_p.G518G|AIFM3_uc002ztm.1_Silent_p.G342G|LZTR1_uc002ztn.2_5'UTR|LZTR1_uc002zto.2_5'Flank|LZTR1_uc011ahy.1_5'Flank	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,	530					activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			ACGGAGAAGGCTTCGACGACG	0.642													55	162					0	0	1	0	0
LZTR1	8216	broad.mit.edu	37	22	21348460	21348460	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21348460C>T	uc002zto.2	+	14	1620	c.1517C>T	c.(1516-1518)CCG>CTG	p.P506L	LZTR1_uc002ztn.2_Missense_Mutation_p.P465L|LZTR1_uc011ahy.1_Missense_Mutation_p.P487L|LZTR1_uc010gsr.1_Missense_Mutation_p.P377L|LZTR1_uc002ztp.2_5'Flank	NM_006767	NP_006758	Q8N653	LZTR1_HUMAN	leucine-zipper-like transcription regulator 1	506	BTB 1.				anatomical structure morphogenesis		sequence-specific DNA binding transcription factor activity			ovary(2)|lung(2)	4	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			GGGGCCCGGCCGCCCCTGCTG	0.682													6	14					0	0	1	0	0
SLC7A4	6545	broad.mit.edu	37	22	21385560	21385560	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21385560G>A	uc002zud.2	-	2	610	c.542C>T	c.(541-543)TCT>TTT	p.S181F	SLC7A4_uc002zue.2_Missense_Mutation_p.S181F	NM_004173	NP_004164	O43246	CTR4_HUMAN	solute carrier family 7 (cationic amino acid	181				THVGSWQVPLLGHYPDFLAAGIILLASAFVSCGARVSS -> DPRGFLAGAPPGPLPGLPGCWHHPPWPLPLSPVEPACPP (in Ref. 1; CAA04263).	cellular amino acid metabolic process	integral to membrane	basic amino acid transmembrane transporter activity			ovary(1)|lung(1)	2	all_cancers(11;2.85e-22)|Lung NSC(8;4.21e-14)|all_lung(8;6.08e-13)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0968)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)		L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GACAAAGGCAGAGGCCAGGAG	0.597													18	28					0	0	1	0	0
HIC2	23119	broad.mit.edu	37	22	21800537	21800537	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21800537C>T	uc002zur.3	+	3	1583	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F	HIC2_uc002zus.3_Silent_p.F451F	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	451	C2H2-type 1.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				CCAAGGGCTTCCCCAGCTCTG	0.622													47	96					0	0	1	0	0
HIC2	23119	broad.mit.edu	37	22	21800647	21800647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21800647C>T	uc002zur.3	+	3	1693	c.1463C>T	c.(1462-1464)GCC>GTC	p.A488V	HIC2_uc002zus.3_Missense_Mutation_p.A488V	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	488					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				GAGGAGGAGGCCGAGGACCTG	0.642													11	43					0	0	1	0	0
HIC2	23119	broad.mit.edu	37	22	21800898	21800898	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21800898C>T	uc002zur.3	+	3	1944	c.1714C>T	c.(1714-1716)CGT>TGT	p.R572C	HIC2_uc002zus.3_Missense_Mutation_p.R572C	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	572	C2H2-type 4.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				GCGCTTCACCCGTCAGTACCG	0.627													13	56					0	0	1	0	0
PI4KAP2	375133	broad.mit.edu	37	22	21841891	21841891	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21841891G>A	uc002zuv.3	-	3	2611	c.352C>T	c.(352-354)CGC>TGC	p.R118C	PI4KAP2_uc002zuw.2_RNA|PI4KAP2_uc011aid.1_RNA|PI4KAP2_uc011aie.1_Missense_Mutation_p.R118C|PI4KAP2_uc011aif.1_Intron|PI4KAP2_uc002zux.2_Missense_Mutation_p.R118C					SubName: Full=Putative uncharacterized protein PI4KA;												0						ATCTTCTCGCGAAGCACATTG	0.607													9	28					0	0	1	0	0
CCDC116	164592	broad.mit.edu	37	22	21989023	21989023	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21989023C>T	uc002zve.2	+	4	764	c.671C>T	c.(670-672)TCG>TTG	p.S224L	CCDC116_uc011aih.1_Missense_Mutation_p.S224L	NM_152612	NP_689825	Q8IYX3	CC116_HUMAN	coiled-coil domain containing 116	224										ovary(1)|skin(1)	2	Colorectal(54;0.105)					CTGTGGGATTCGCTGGGTAGC	0.597													93	227					0	0	1	0	0
SDF2L1	23753	broad.mit.edu	37	22	21998344	21998345	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:21998344_21998345CC>TT	uc002zvf.2	+	3	630_631	c.546_547CC>TT	c.(544-549)ATCCGT>ATTTGT	p.R183C		NM_022044	NP_071327	Q9HCN8	SDF2L_HUMAN	stromal cell-derived factor 2-like 1 precursor	183	MIR 3.					endoplasmic reticulum lumen|membrane					0	Colorectal(54;0.105)					GAAGCCCCATCCGTGGGCAGCA	0.604											OREG0026342	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	31					0	0	1	0	0
PPIL2	23759	broad.mit.edu	37	22	22039149	22039149	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22039149C>T	uc010gtj.1	+	10	777	c.661C>T	c.(661-663)CTG>TTG	p.L221L	PPIL2_uc002zvh.3_Silent_p.L221L|PPIL2_uc002zvi.3_Silent_p.L221L|PPIL2_uc002zvg.3_Silent_p.L221L|PPIL2_uc011aij.1_Silent_p.L200L|PPIL2_uc002zvk.3_5'Flank	NM_148175	NP_680480	Q13356	PPIL2_HUMAN	peptidylprolyl isomerase-like 2 isoform a	221					blood coagulation|leukocyte migration|protein folding|protein polyubiquitination	Golgi lumen|nucleus|ubiquitin ligase complex	peptidyl-prolyl cis-trans isomerase activity|ubiquitin-ubiquitin ligase activity			ovary(2)	2	Colorectal(54;0.105)					GGACGAGATTCTGGCAGCCAC	0.562													24	39					0	0	1	0	0
MAPK1	5594	broad.mit.edu	37	22	22123583	22123583	+	Silent	SNP	G	A	A	rs62235129		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22123583G>A	uc002zvn.2	-	8	1233	c.993C>T	c.(991-993)TTC>TTT	p.F331F	MAPK1_uc002zvo.2_Silent_p.F331F|MAPK1_uc010gtk.1_Silent_p.F287F	NM_002745	NP_002736	P28482	MK01_HUMAN	mitogen-activated protein kinase 1	331					activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|induction of apoptosis|innate immune response|insulin receptor signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleoplasm	ATP binding|DNA binding|MAP kinase activity|phosphatase binding|RNA polymerase II carboxy-terminal domain kinase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	Colorectal(54;0.105)	all_lung(157;3.89e-05)		READ - Rectum adenocarcinoma(21;0.0689)	Arsenic trioxide(DB01169)	ATTCCATGTCGAACTTGAATG	0.368													32	60					0	0	1	0	0
TOP3B	8940	broad.mit.edu	37	22	22311705	22311705	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22311705G>A	uc002zvs.2	-	18	2805	c.2370C>T	c.(2368-2370)CTC>CTT	p.L790L	TOP3B_uc010gtm.1_3'UTR|TOP3B_uc002zvr.2_3'UTR|TOP3B_uc010gtl.2_Silent_p.L790L|TOP3B_uc002zvt.3_Silent_p.L790L	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	790					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		CATCGCCCGGGAGTGGGGACT	0.642													4	21					0	0	1	0	0
TOP3B	8940	broad.mit.edu	37	22	22312906	22312906	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22312906G>A	uc002zvs.2	-	17	2500	c.2065C>T	c.(2065-2067)CCC>TCC	p.P689S	TOP3B_uc010gtm.1_Missense_Mutation_p.P234S|TOP3B_uc002zvr.2_Missense_Mutation_p.P414S|TOP3B_uc010gtl.2_Missense_Mutation_p.P689S|TOP3B_uc002zvt.3_Missense_Mutation_p.P689S	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	689					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		TAGCAGTAGGGGCACAGCGGG	0.587													25	98					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22385778	22385778	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22385778C>T	uc011aim.1	+	2		c.258C>T			uc002zvu.2_Intron					Parts of antibodies, mostly variable regions.												0						TCTCAGGCTCCAGCTCTGGGG	0.577													27	65					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22453567	22453567	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22453567C>T	uc011aim.1	+	7		c.700C>T								Parts of antibodies, mostly variable regions.												0						CACGGGGGCCCAGGCAGATGA	0.488													32	103					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22663071	22663071	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22663071C>T	uc011aim.1	+	29		c.1844C>T			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						GCCTGATTTTCGGATAGCTGC	0.303													5	22					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22697996	22697996	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22697996G>A	uc011aim.1	+	39		c.3956G>A								Parts of antibodies, mostly variable regions.												0						GGCCTGAATCGGTACCTGACC	0.567											OREG0026357	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	18					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22712610	22712610	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22712610C>T	uc011aim.1	+	41		c.4398C>T								Parts of antibodies, mostly variable regions.												0						CTGAGTGGTCCCACAGTGCTC	0.637													19	176					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22735275	22735275	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22735275C>T	uc011aim.1	+	45		c.5182C>T								Parts of antibodies, mostly variable regions.												0						TCCTCCTCACCCTCCTCACTC	0.577													5	11					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22749636	22749636	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22749636C>T	uc011aim.1	+	49		c.5633C>T								Parts of antibodies, mostly variable regions.												0						TGGTTACTATCCAAACTGGTT	0.557													13	51					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22749721	22749721	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22749721G>A	uc011aim.1	+	49		c.5718G>A								Parts of antibodies, mostly variable regions.												0						ACCCCTGCCCGGTTCTCAGGC	0.547													31	40					0	0	1	0	0
ZNF280A	129025	broad.mit.edu	37	22	22868820	22868820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22868820G>A	uc002zwe.2	-	2	1388	c.1135C>T	c.(1135-1137)CTC>TTC	p.L379F	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	379	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		TGTTGTAAGAGGACCTGATCT	0.473													9	144					0	0	1	0	0
ZNF280A	129025	broad.mit.edu	37	22	22869096	22869096	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22869096C>T	uc002zwe.2	-	2	1112	c.859G>A	c.(859-861)GAT>AAT	p.D287N	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	287					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		GGCTGCCCATCTCCTTTATGC	0.383													18	191					0	0	1	0	0
PRAME	23532	broad.mit.edu	37	22	22890763	22890763	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22890763G>A	uc002zwf.2	-	5	1412	c.1256C>T	c.(1255-1257)TCC>TTC	p.S419F	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.S403F|PRAME_uc010gtr.2_Missense_Mutation_p.S419F|PRAME_uc002zwg.2_Missense_Mutation_p.S419F|PRAME_uc002zwh.2_Missense_Mutation_p.S419F|PRAME_uc002zwi.2_Missense_Mutation_p.S419F|PRAME_uc002zwj.2_Missense_Mutation_p.S419F|PRAME_uc002zwk.2_Missense_Mutation_p.S419F	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	419	LRR 4.|Mediates interaction with RARA.				apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		GGCAGATATGGAGATGGAATT	0.547													17	49					0	0	1	0	0
PRAME	23532	broad.mit.edu	37	22	22890774	22890774	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22890774C>T	uc002zwf.2	-	5	1401	c.1245G>A	c.(1243-1245)GGG>GGA	p.G415G	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Silent_p.G399G|PRAME_uc010gtr.2_Silent_p.G415G|PRAME_uc002zwg.2_Silent_p.G415G|PRAME_uc002zwh.2_Silent_p.G415G|PRAME_uc002zwi.2_Silent_p.G415G|PRAME_uc002zwj.2_Silent_p.G415G|PRAME_uc002zwk.2_Silent_p.G415G	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	415	LRR 4.				apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		AGATGGAATTCCCGTAGAAGC	0.547													16	50					0	0	1	0	0
PRAME	23532	broad.mit.edu	37	22	22892237	22892237	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22892237G>A	uc002zwf.2	-	4	1020	c.864C>T	c.(862-864)TTC>TTT	p.F288F	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Silent_p.F272F|PRAME_uc010gtr.2_Silent_p.F288F|PRAME_uc002zwg.2_Silent_p.F288F|PRAME_uc002zwh.2_Silent_p.F288F|PRAME_uc002zwi.2_Silent_p.F288F|PRAME_uc002zwj.2_Silent_p.F288F|PRAME_uc002zwk.2_Silent_p.F288F	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	288					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		ACTGAGAGGTGAACTGGGCGA	0.522													27	66					0	0	1	0	0
PRAME	23532	broad.mit.edu	37	22	22892266	22892266	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22892266C>T	uc002zwf.2	-	4	991	c.835G>A	c.(835-837)GAG>AAG	p.E279K	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.E263K|PRAME_uc010gtr.2_Missense_Mutation_p.E279K|PRAME_uc002zwg.2_Missense_Mutation_p.E279K|PRAME_uc002zwh.2_Missense_Mutation_p.E279K|PRAME_uc002zwi.2_Missense_Mutation_p.E279K|PRAME_uc002zwj.2_Missense_Mutation_p.E279K|PRAME_uc002zwk.2_Missense_Mutation_p.E279K	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	279					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		TCTTCCTTCTCCGGGGAAATG	0.507													34	81					0	0	1	0	0
PRAME	23532	broad.mit.edu	37	22	22893441	22893441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22893441C>T	uc002zwf.2	-	3	248	c.92G>A	c.(91-93)GGG>GAG	p.G31E	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.G15E|PRAME_uc010gtr.2_Missense_Mutation_p.G31E|PRAME_uc002zwg.2_Missense_Mutation_p.G31E|PRAME_uc002zwh.2_Missense_Mutation_p.G31E|PRAME_uc002zwi.2_Missense_Mutation_p.G31E|PRAME_uc002zwj.2_Missense_Mutation_p.G31E|PRAME_uc002zwk.2_Missense_Mutation_p.G31E	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	31					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		CAGGCTCTGCCCTGCCAGCTC	0.592													33	198					0	0	1	0	0
GGTLC2	91227	broad.mit.edu	37	22	22989341	22989341	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:22989341C>T	uc010gtt.2	+	2	328	c.294C>T	c.(292-294)TTC>TTT	p.F98F	LOC96610_uc011aim.1_Intron|POM121L1P_uc011ait.1_5'Flank|GGTLC2_uc010gts.2_Silent_p.F98F	NM_199127	NP_954578	Q14390	GGTL2_HUMAN	gamma-glutamyltransferase-like 4 isoform 1	98					glutathione biosynthetic process		gamma-glutamyltransferase activity			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.3e-31)|Acute lymphoblastic leukemia(6;5.54e-23)		READ - Rectum adenocarcinoma(21;0.145)		CTGCCAATTTCATCCAGCCAG	0.612													72	168					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23011177	23011177	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23011177C>T	uc011aim.1	+	121		c.7863C>T								Parts of antibodies, mostly variable regions.												0						CTGAGCGATTCTCCGGCTCCA	0.557													17	37					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23029766	23029766	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23029766G>A	uc011aim.1	+	129		c.8388G>A								Parts of antibodies, mostly variable regions.												0						CAAGCAGACAGGGAAGTGAGA	0.517													8	55					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23063518	23063518	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23063518G>A	uc011aim.1	+	167		c.9717G>A								Parts of antibodies, mostly variable regions.												0						GGCCCTCAGGGATCCCAGACC	0.532													23	53					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23077472	23077472	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23077472C>T	uc011aim.1	+	187		c.10163C>T								Parts of antibodies, mostly variable regions.												0						CTGATCGCTTCTCTGGGTCCA	0.557													114	237					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23090244	23090244	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23090244C>T	uc011aim.1	+	203		c.10538C>T								Parts of antibodies, mostly variable regions.												0						CAGGCCAGTTCCCTGTGCTGG	0.522													8	83					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23114868	23114868	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23114868G>A	uc011aim.1	+	237		c.11485G>A								Parts of antibodies, mostly variable regions.												0						AACAACATTGGAAGTAAAGCT	0.562													9	41					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23135302	23135302	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23135302C>T	uc011aim.1	+	251		c.11944C>T								Parts of antibodies, mostly variable regions.												0						AACTATGTCTCCTGGTACCAA	0.552													168	397					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23135515	23135515	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23135515G>A	uc011aim.1	+	252		c.12139G>A								Parts of antibodies, mostly variable regions.												0						AGTTCCTGGGGAACTGAGACC	0.557													25	89					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23162132	23162132	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23162132G>A	uc011aim.1	+	283		c.12908G>A								Parts of antibodies, mostly variable regions.												0						GGCCCTCTGGGATCCCTGAGC	0.572													28	56					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23162204	23162204	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23162204G>A	uc011aim.1	+	283		c.12980G>A								Parts of antibodies, mostly variable regions.												0						CCCAAGCCGGGGATGAGGCTG	0.557													21	56					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23165508	23165508	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23165508C>T	uc011aim.1	+	287		c.13070C>T								Parts of antibodies, mostly variable regions.												0						GACTCAGCCTCCCTCCGCGTC	0.592													113	286					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23223458	23223458	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23223458C>T	uc011aim.1	+	334		c.14593C>T								Parts of antibodies, mostly variable regions.												0						CCTCAGGGATCCCTGAGCGAT	0.547													28	59					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23264783	23264783	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23264783C>T	uc011aim.1	+	379		c.16604C>T								Parts of antibodies, mostly variable regions.												0						CAAGGCTGCCCCCTCGGTCAC	0.622													17	60					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23265006	23265006	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23265006C>T	uc011aim.1	+	379		c.16827C>T								Parts of antibodies, mostly variable regions.												0						CAGTGGAAGTCCCACAGAAGC	0.612													12	66					0	0	1	0	0
RTDR1	27156	broad.mit.edu	37	22	23406208	23406208	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23406208C>T	uc002zwt.2	-	5	683	c.525G>A	c.(523-525)CTG>CTA	p.L175L		NM_014433	NP_055248	Q9UHP6	RTDR1_HUMAN	rhabdoid tumor deletion region protein 1	175							binding			ovary(1)	1	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.175)		GGCAGAGGACCAGTGTGTCCA	0.577													10	49					0	0	1	0	0
GNAZ	2781	broad.mit.edu	37	22	23438219	23438219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23438219C>T	uc002zwu.1	+	2	874	c.337C>T	c.(337-339)CCC>TCC	p.P113S	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	113						endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		GCTGACGGGCCCCGCTGAGAG	0.692													38	122					0	0	1	0	0
ZDHHC8P1	150244	broad.mit.edu	37	22	23742318	23742318	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23742318G>A	uc002zxa.3	-	3		c.818C>T			ZDHHC8P1_uc002zxb.3_RNA|ZDHHC8P1_uc002zwz.3_RNA	NR_003950				Homo sapiens cDNA FLJ31568 fis, clone NT2RI2001595.												0						CCCAGCACGGGACTGAAGCTG	0.677													8	31					0	0	1	0	0
ZDHHC8P1	150244	broad.mit.edu	37	22	23742538	23742538	+	RNA	SNP	C	T	T	rs743353	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23742538C>T	uc002zxa.3	-	3		c.598G>A			ZDHHC8P1_uc002zxb.3_RNA|ZDHHC8P1_uc002zwz.3_RNA	NR_003950				Homo sapiens cDNA FLJ31568 fis, clone NT2RI2001595.												0						GGCCCACCCTCGGAGCACAGG	0.627													4	18					0	0	1	0	0
ZDHHC8P1	150244	broad.mit.edu	37	22	23742556	23742556	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23742556G>A	uc002zxa.3	-	3		c.580C>T			ZDHHC8P1_uc002zxb.3_RNA|ZDHHC8P1_uc002zwz.3_RNA	NR_003950				Homo sapiens cDNA FLJ31568 fis, clone NT2RI2001595.												0						AGGGGCTGCAGGGCCACGTAG	0.642													7	15					0	0	1	0	0
C22orf43	51233	broad.mit.edu	37	22	23956368	23956368	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23956368G>A	uc002zxf.2	-	9	852	c.575C>T	c.(574-576)TCA>TTA	p.S192L		NM_016449	NP_057533	Q6PGQ1	CV043_HUMAN	hypothetical protein LOC51233	192	Asp-rich.									skin(1)	1						GTGTCTCAGTGAGCATCTTAA	0.443													17	110					0	0	1	0	0
C22orf43	51233	broad.mit.edu	37	22	23974157	23974157	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:23974157C>T	uc002zxf.2	-	1	331	c.54G>A	c.(52-54)GGG>GGA	p.G18G		NM_016449	NP_057533	Q6PGQ1	CV043_HUMAN	hypothetical protein LOC51233	18										skin(1)	1						GTGCGTCCTTCCCCCTGGGCC	0.527													18	81					0	0	1	0	0
RGL4	266747	broad.mit.edu	37	22	24036125	24036125	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24036125G>A	uc002zxn.2	+	4	2046	c.876G>A	c.(874-876)AGG>AGA	p.R292R	LOC91316_uc002zxh.3_5'Flank|LOC91316_uc002zxi.3_5'Flank|LOC91316_uc002zxk.3_Intron|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_Intron|LOC91316_uc002zxm.3_Intron|RGL4_uc002zxo.2_Silent_p.R292R|RGL4_uc002zxp.1_Silent_p.R156R|RGL4_uc002zxq.2_Silent_p.R156R	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	292	Ras-GEF.				small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						CCCGGGACAGGGCCAGGGTGG	0.592													27	61					0	0	1	0	0
MMP11	4320	broad.mit.edu	37	22	24121450	24121450	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24121450C>T	uc002zxx.2	+	2	207	c.185C>T	c.(184-186)GCC>GTC	p.A62V	MMP11_uc002zxy.2_RNA|MMP11_uc002zxz.2_5'Flank	NM_005940	NP_005931	P24347	MMP11_HUMAN	matrix metalloproteinase 11 preproprotein	62					collagen catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|large_intestine(1)	3		Medulloblastoma(6;9.86e-08)|all_neural(6;0.000318)				CCGGCACCTGCCCCTGCCACG	0.711													11	15					0	0	1	0	0
MMP11	4320	broad.mit.edu	37	22	24125674	24125674	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24125674C>T	uc002zxx.2	+	8	1432	c.1410C>T	c.(1408-1410)CCC>CCT	p.P470P	MMP11_uc002zxy.2_RNA|MMP11_uc002zxz.2_RNA	NM_005940	NP_005931	P24347	MMP11_HUMAN	matrix metalloproteinase 11 preproprotein	470	Hemopexin-like 4.				collagen catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|large_intestine(1)	3		Medulloblastoma(6;9.86e-08)|all_neural(6;0.000318)				AAGGCTTCCCCCGTCTCGTGG	0.607													31	76					0	0	1	0	0
SLC2A11	66035	broad.mit.edu	37	22	24210737	24210737	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24210737C>T	uc002zyn.3	+	3	289	c.190C>T	c.(190-192)CTG>TTG	p.L64L	SLC2A11_uc002zyl.1_Silent_p.L71L|SLC2A11_uc002zym.3_Silent_p.L71L|SLC2A11_uc002zyo.3_RNA|SLC2A11_uc011ajc.1_Silent_p.L71L|SLC2A11_uc011ajd.1_Silent_p.L58L|SLC2A11_uc002zyp.3_Silent_p.L67L	NM_001024938	NP_001020109	Q9BYW1	GTR11_HUMAN	glucose transporter protein 10 isoform c	64	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity			ovary(1)	1						TCACCTAGTCCTGCTTATGTG	0.562													16	94					0	0	1	0	0
SLC2A11	66035	broad.mit.edu	37	22	24226910	24226910	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24226910C>T	uc002zyn.3	+	12	1464	c.1365C>T	c.(1363-1365)TTC>TTT	p.F455F	SLC2A11_uc002zym.3_Silent_p.F462F|SLC2A11_uc002zyo.3_RNA|SLC2A11_uc011ajc.1_Missense_Mutation_p.S462F|SLC2A11_uc002zyp.3_Silent_p.F458F	NM_001024938	NP_001020109	Q9BYW1	GTR11_HUMAN	glucose transporter protein 10 isoform c	455	Helical; Name=12; (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity			ovary(1)	1						CTGGCCTGTTCCTTCCTGAGA	0.562													51	144					0	0	1	0	0
SUSD2	56241	broad.mit.edu	37	22	24579067	24579067	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24579067G>A	uc002zzn.1	+	2	163	c.119G>A	c.(118-120)GGG>GAG	p.G40E		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	40	Extracellular (Potential).|SMB.				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GCCCTGGACGGGCCATGTTCC	0.632													18	182					0	0	1	0	0
SUSD2	56241	broad.mit.edu	37	22	24581994	24581994	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24581994C>T	uc002zzn.1	+	9	1394	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	450	VWFD.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCTCCGCCTTCGGAGACCCAC	0.652													12	24					0	0	1	0	0
SUSD2	56241	broad.mit.edu	37	22	24583561	24583561	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24583561C>T	uc002zzn.1	+	12	1958	c.1914C>T	c.(1912-1914)TCC>TCT	p.S638S		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	638	VWFD.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ATGCGTCCTCCCTGCTCACCT	0.612													20	67					0	0	1	0	0
GGT5	2687	broad.mit.edu	37	22	24621549	24621549	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24621549C>T	uc002zzo.3	-	9	1718	c.1301G>A	c.(1300-1302)CGA>CAA	p.R434Q	GGT5_uc002zzp.3_Missense_Mutation_p.R434Q|GGT5_uc002zzr.3_Missense_Mutation_p.R402Q|GGT5_uc002zzq.3_Missense_Mutation_p.R402Q|GGT5_uc011ajm.1_Missense_Mutation_p.R357Q	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	434	Extracellular (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						CCGGGGGCATCGCTCGCATAA	0.647													8	33					0	0	1	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659603	24659603	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24659603C>T	uc002zzs.3	+	7		c.3335C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						CGAAGGCTGCCTTCAGTGCCT	0.652													3	10					0	0	1	0	0
UPB1	51733	broad.mit.edu	37	22	24896103	24896103	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:24896103G>A	uc003aaf.2	+	2	254	c.133G>A	c.(133-135)GAA>AAA	p.E45K	UPB1_uc003aae.2_Intron|UPB1_uc011ajt.1_Missense_Mutation_p.E45K	NM_016327	NP_057411	Q9UBR1	BUP1_HUMAN	beta-ureidopropionase	45					pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	beta-ureidopropionase activity|metal ion binding			ovary(2)	2	Colorectal(2;0.0339)					GGAAGCTTTCGAAGCTGCCTC	0.522													41	86					0	0	1	0	0
GGT1	2678	broad.mit.edu	37	22	25023478	25023478	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25023478C>T	uc003aan.1	+	12	1587	c.1100C>T	c.(1099-1101)TCC>TTC	p.S367F	GGT1_uc003aas.1_Missense_Mutation_p.S367F|GGT1_uc003aat.1_Missense_Mutation_p.S367F|GGT1_uc003aau.1_Missense_Mutation_p.S367F|GGT1_uc003aav.1_Missense_Mutation_p.S367F|GGT1_uc003aaw.1_Missense_Mutation_p.S367F|GGT1_uc003aax.1_Missense_Mutation_p.S367F|GGT1_uc003aay.1_Missense_Mutation_p.S23F	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	367	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	CACCCGATCTCCTACTACAAG	0.637													5	46					0	0	1	0	0
GGT1	2678	broad.mit.edu	37	22	25023490	25023491	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25023490_25023491CC>TT	uc003aan.1	+	12	1599_1600	c.1112_1113CC>TT	c.(1111-1113)CCC>CTT	p.P371L	GGT1_uc003aas.1_Missense_Mutation_p.P371L|GGT1_uc003aat.1_Missense_Mutation_p.P371L|GGT1_uc003aau.1_Missense_Mutation_p.P371L|GGT1_uc003aav.1_Missense_Mutation_p.P371L|GGT1_uc003aaw.1_Missense_Mutation_p.P371L|GGT1_uc003aax.1_Missense_Mutation_p.P371L|GGT1_uc003aay.1_Missense_Mutation_p.P27L	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	371	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	TACTACAAGCCCGAGTTCTACA	0.619													17	25					0	0	1	0	0
PIWIL3	440822	broad.mit.edu	37	22	25121451	25121451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25121451C>T	uc003abd.1	-	17	2485	c.2068G>A	c.(2068-2070)GGA>AGA	p.G690R	PIWIL3_uc011ajx.1_Missense_Mutation_p.G572R|PIWIL3_uc011ajy.1_Missense_Mutation_p.G572R|PIWIL3_uc010gut.1_Missense_Mutation_p.G681R	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	690	Piwi.				cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						AGCTCTTCTCCTGTTTTCTGG	0.383													9	137					0	0	1	0	0
PIWIL3	440822	broad.mit.edu	37	22	25145731	25145731	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25145731C>T	uc003abd.1	-	10	1562	c.1145G>A	c.(1144-1146)AGA>AAA	p.R382K	PIWIL3_uc011ajx.1_Missense_Mutation_p.R273K|PIWIL3_uc011ajy.1_Missense_Mutation_p.R273K|PIWIL3_uc010gut.1_Missense_Mutation_p.R382K	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	382	PAZ.				cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						CTTTTTCCATCTGCCCTGGCT	0.463													20	58					0	0	1	0	0
PIWIL3	440822	broad.mit.edu	37	22	25150165	25150165	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25150165G>A	uc003abd.1	-	8	1210	c.793C>T	c.(793-795)CTT>TTT	p.L265F	PIWIL3_uc011ajx.1_Missense_Mutation_p.L156F|PIWIL3_uc011ajy.1_Missense_Mutation_p.L156F|PIWIL3_uc010gut.1_Missense_Mutation_p.L265F	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	265					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						ACATAACCAAGCCAGATTTCC	0.403													15	65					0	0	1	0	0
PIWIL3	440822	broad.mit.edu	37	22	25150797	25150797	+	Missense_Mutation	SNP	G	A	A	rs142590557		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25150797G>A	uc003abd.1	-	7	1144	c.727C>T	c.(727-729)CGC>TGC	p.R243C	PIWIL3_uc011ajx.1_Missense_Mutation_p.R134C|PIWIL3_uc011ajy.1_Missense_Mutation_p.R134C|PIWIL3_uc010gut.1_Missense_Mutation_p.R243C	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	243					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						TAATAGTTGCGACCAACTTGT	0.348													32	98					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25255686	25255686	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25255686G>A	uc003abg.2	+	9	962	c.805G>A	c.(805-807)GAC>AAC	p.D269N	SGSM1_uc003abh.2_Missense_Mutation_p.D269N|SGSM1_uc010guu.1_Missense_Mutation_p.D269N|SGSM1_uc003abj.2_Missense_Mutation_p.D269N|SGSM1_uc003abi.1_Missense_Mutation_p.D244N|SGSM1_uc003abf.2_Missense_Mutation_p.D269N	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	269						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TCTGCAGAGGGACGACATGGA	0.557													27	42					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25255689	25255689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25255689G>A	uc003abg.2	+	9	965	c.808G>A	c.(808-810)GAC>AAC	p.D270N	SGSM1_uc003abh.2_Missense_Mutation_p.D270N|SGSM1_uc010guu.1_Missense_Mutation_p.D270N|SGSM1_uc003abj.2_Missense_Mutation_p.D270N|SGSM1_uc003abi.1_Missense_Mutation_p.D245N|SGSM1_uc003abf.2_Missense_Mutation_p.D270N	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	270						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GCAGAGGGACGACATGGAGGC	0.562													20	57					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25264389	25264389	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25264389G>A	uc003abg.2	+	11	1198	c.1041G>A	c.(1039-1041)CAG>CAA	p.Q347Q	SGSM1_uc003abh.2_Silent_p.Q347Q|SGSM1_uc010guu.1_Silent_p.Q347Q|SGSM1_uc003abj.2_Silent_p.Q347Q|SGSM1_uc003abi.1_Silent_p.Q322Q	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	347	Required for interaction with RAP family members.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						ACGGGATCCAGAGGCCGCCCT	0.642													24	53					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25294042	25294042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25294042C>T	uc003abg.2	+	20	2448	c.2291C>T	c.(2290-2292)TCC>TTC	p.S764F	SGSM1_uc003abh.2_Missense_Mutation_p.S703F|SGSM1_uc010guu.1_Missense_Mutation_p.S709F|SGSM1_uc003abj.2_Missense_Mutation_p.S648F|SGSM1_uc003abi.1_Missense_Mutation_p.S684F	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	764	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GGCACTTGTTCCCCAGACTCG	0.562													6	50					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25294157	25294158	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25294157_25294158GG>AA	uc003abg.2	+	20	2563_2564	c.2406_2407GG>AA	c.(2404-2409)ACGGTG>ACAATG	p.V803M	SGSM1_uc003abh.2_Missense_Mutation_p.V742M|SGSM1_uc010guu.1_Missense_Mutation_p.V748M|SGSM1_uc003abj.2_Missense_Mutation_p.V687M|SGSM1_uc003abi.1_Missense_Mutation_p.V723M	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	803	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						ACACCCCCACGGTGCTGCGACC	0.629													13	66					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25294370	25294370	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25294370G>A	uc003abg.2	+	20	2776	c.2619G>A	c.(2617-2619)AGG>AGA	p.R873R	SGSM1_uc003abh.2_Silent_p.R812R|SGSM1_uc010guu.1_Silent_p.R818R|SGSM1_uc003abj.2_Silent_p.R757R|SGSM1_uc003abi.1_Silent_p.R793R	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	873	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						AGGGCTGGAGGAGCAGCGAGA	0.592													31	73					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25294372	25294372	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25294372G>A	uc003abg.2	+	20	2778	c.2621G>A	c.(2620-2622)AGC>AAC	p.S874N	SGSM1_uc003abh.2_Missense_Mutation_p.S813N|SGSM1_uc010guu.1_Missense_Mutation_p.S819N|SGSM1_uc003abj.2_Missense_Mutation_p.S758N|SGSM1_uc003abi.1_Missense_Mutation_p.S794N	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	874	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GGCTGGAGGAGCAGCGAGACA	0.592													11	92					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25308672	25308673	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25308672_25308673GG>AA	uc003abg.2	+	23	3203_3204	c.3046_3047GG>AA	c.(3046-3048)GGA>AAA	p.G1016K	SGSM1_uc003abh.2_Missense_Mutation_p.G955K|SGSM1_uc010guu.1_Missense_Mutation_p.G961K|SGSM1_uc003abj.2_Missense_Mutation_p.G900K|SGSM1_uc003abi.1_Missense_Mutation_p.G936K	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	1016	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CTTCCCCCACGGAGGCGCCATG	0.505													4	39					0	0	1	0	0
TMEM211	255349	broad.mit.edu	37	22	25331309	25331309	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25331309C>T	uc003abk.1	-	3	406	c.381G>A	c.(379-381)ATG>ATA	p.M127I		NM_001001663	NP_001001663	Q6ICI0	TM211_HUMAN	transmembrane protein 211	198						integral to membrane					0						TTTATTTGTTCATTTCTGGCA	0.423													40	101					0	0	1	0	0
TMEM211	255349	broad.mit.edu	37	22	25334143	25334143	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25334143G>A	uc003abk.1	-	2	125	c.100C>T	c.(100-102)CCA>TCA	p.P34S		NM_001001663	NP_001001663	Q6ICI0	TM211_HUMAN	transmembrane protein 211	105						integral to membrane					0						CCTGGCATTGGAACACTGCTT	0.478													14	77					0	0	1	0	0
CRYBB2	1415	broad.mit.edu	37	22	25620922	25620922	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25620922C>T	uc003abp.1	+	3	140	c.92C>T	c.(91-93)TCG>TTG	p.S31L		NM_000496	NP_000487	P43320	CRBB2_HUMAN	crystallin, beta B2	31	Beta/gamma crystallin 'Greek key' 1.				response to stimulus|visual perception		structural constituent of eye lens				0						CAAGGCCACTCGCATGAGCTC	0.547													24	43					0	0	1	0	0
CRYBB2	1415	broad.mit.edu	37	22	25627729	25627729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25627729C>T	uc003abp.1	+	6	656	c.608C>T	c.(607-609)CCC>CTC	p.P203L		NM_000496	NP_000487	P43320	CRBB2_HUMAN	crystallin, beta B2	203	C-terminal arm.				response to stimulus|visual perception		structural constituent of eye lens				0						GCCTTCCACCCCTCCAACTAG	0.622													24	66					0	0	1	0	0
IGLL3	91353	broad.mit.edu	37	22	25715948	25715948	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:25715948G>A	uc003abr.2	+	2	670	c.570G>A	c.(568-570)CTG>CTA	p.L190L		NM_001013618	NP_001013640			immunoglobulin lambda-like polypeptide 3												0						GCAGCTACCTGAGCCTGACGC	0.607													13	104					0	0	1	0	0
ADRBK2	157	broad.mit.edu	37	22	26118352	26118352	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26118352C>T	uc003abx.3	+	21	2149	c.2002C>T	c.(2002-2004)CCT>TCT	p.P668S	ADRBK2_uc003aby.3_RNA	NM_005160	NP_005151	P35626	ARBK2_HUMAN	beta-adrenergic receptor kinase 2	668							ATP binding|beta-adrenergic receptor kinase activity|signal transducer activity			lung(3)|ovary(2)|stomach(1)|central_nervous_system(1)	7					Adenosine triphosphate(DB00171)	CCTCAACAAACCTCGGTCAGG	0.552													29	70					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26157080	26157080	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26157080C>T	uc003abz.1	+	2	271	c.21C>T	c.(19-21)CTC>CTT	p.L7L	MYO18B_uc003aca.1_5'Flank|MYO18B_uc010guy.1_5'Flank|MYO18B_uc010guz.1_5'Flank|MYO18B_uc011aka.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	7						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CATCACGCCTCGCCCTGTGGG	0.592													25	99					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26164095	26164095	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26164095C>T	uc003abz.1	+	4	462	c.212C>T	c.(211-213)TCC>TTC	p.S71F	MYO18B_uc003aca.1_5'UTR|MYO18B_uc010guy.1_5'UTR|MYO18B_uc010guz.1_5'UTR|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	71	Ser-rich.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCAGAAATTTCCATCAGCCAA	0.498													42	139					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26164589	26164589	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26164589G>A	uc003abz.1	+	4	956	c.706G>A	c.(706-708)GAG>AAG	p.E236K	MYO18B_uc003aca.1_Missense_Mutation_p.E117K|MYO18B_uc010guy.1_Missense_Mutation_p.E117K|MYO18B_uc010guz.1_Missense_Mutation_p.E117K|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	236						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AAAAGGCGAGGAGGGTCAAAG	0.627													7	11					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26164846	26164846	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26164846C>T	uc003abz.1	+	4	1213	c.963C>T	c.(961-963)TTC>TTT	p.F321F	MYO18B_uc003aca.1_Silent_p.F202F|MYO18B_uc010guy.1_Silent_p.F202F|MYO18B_uc010guz.1_Silent_p.F202F|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	321						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGGGAGGTTTCCTGGGAAGAA	0.532													4	17					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26165032	26165032	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26165032G>A	uc003abz.1	+	4	1399	c.1149G>A	c.(1147-1149)GGG>GGA	p.G383G	MYO18B_uc003aca.1_Silent_p.G264G|MYO18B_uc010guy.1_Silent_p.G264G|MYO18B_uc010guz.1_Silent_p.G264G|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	383						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCACGACTGGGAAGGCAGGTG	0.582													11	20					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26165144	26165144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26165144G>A	uc003abz.1	+	4	1511	c.1261G>A	c.(1261-1263)GAG>AAG	p.E421K	MYO18B_uc003aca.1_Missense_Mutation_p.E302K|MYO18B_uc010guy.1_Missense_Mutation_p.E302K|MYO18B_uc010guz.1_Missense_Mutation_p.E302K|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	421						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGCCCCAAAGGAGGTGAGCAC	0.607													6	18					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26176114	26176114	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26176114G>A	uc003abz.1	+	9	2410	c.2160G>A	c.(2158-2160)GTG>GTA	p.V720V	MYO18B_uc003aca.1_Silent_p.V601V|MYO18B_uc010guy.1_Silent_p.V601V|MYO18B_uc010guz.1_Silent_p.V601V|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_Silent_p.V233V	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	720	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TCTCCATGGTGATGTCGCTGG	0.642													6	17					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26219491	26219491	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26219491G>A	uc003abz.1	+	13	2791	c.2541G>A	c.(2539-2541)ATG>ATA	p.M847I	MYO18B_uc003aca.1_Missense_Mutation_p.M728I|MYO18B_uc010guy.1_Missense_Mutation_p.M728I|MYO18B_uc010guz.1_Missense_Mutation_p.M728I|MYO18B_uc011aka.1_Missense_Mutation_p.M1I|MYO18B_uc011akb.1_Missense_Mutation_p.M360I	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	847	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGCAGTTCATGAGGTTTGAGT	0.577													22	52					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26222391	26222391	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26222391G>A	uc003abz.1	+	14	2961	c.2711G>A	c.(2710-2712)GGA>GAA	p.G904E	MYO18B_uc003aca.1_Missense_Mutation_p.G785E|MYO18B_uc010guy.1_Missense_Mutation_p.G785E|MYO18B_uc010guz.1_Missense_Mutation_p.G785E|MYO18B_uc011aka.1_Missense_Mutation_p.G58E|MYO18B_uc011akb.1_Missense_Mutation_p.G417E	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	904	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AAGATGACAGGAGTGGACTGT	0.562													29	83					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26228908	26228908	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26228908C>T	uc003abz.1	+	16	3254	c.3004C>T	c.(3004-3006)CTC>TTC	p.L1002F	MYO18B_uc003aca.1_Missense_Mutation_p.L883F|MYO18B_uc010guy.1_Missense_Mutation_p.L883F|MYO18B_uc010guz.1_Missense_Mutation_p.L883F|MYO18B_uc011aka.1_Missense_Mutation_p.L156F|MYO18B_uc011akb.1_Missense_Mutation_p.L515F	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1002	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCAGTTTGACCTCCCGGACCC	0.507													11	88					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26228957	26228957	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26228957C>T	uc003abz.1	+	16	3303	c.3053C>T	c.(3052-3054)CCC>CTC	p.P1018L	MYO18B_uc003aca.1_Missense_Mutation_p.P899L|MYO18B_uc010guy.1_Missense_Mutation_p.P899L|MYO18B_uc010guz.1_Missense_Mutation_p.P899L|MYO18B_uc011aka.1_Missense_Mutation_p.P172L|MYO18B_uc011akb.1_Missense_Mutation_p.P531L	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1018	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GATCAAAATCCCTCTCAGGTA	0.483													27	69					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26242107	26242107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26242107C>T	uc003abz.1	+	19	3659	c.3409C>T	c.(3409-3411)CCT>TCT	p.P1137S	MYO18B_uc003aca.1_Missense_Mutation_p.P1018S|MYO18B_uc010guy.1_Missense_Mutation_p.P1019S|MYO18B_uc010guz.1_Missense_Mutation_p.P1018S|MYO18B_uc011aka.1_Missense_Mutation_p.P291S|MYO18B_uc011akb.1_Missense_Mutation_p.P650S	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1137	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGCCAAGCTGCCTCCTGTGTG	0.652													5	18					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26242165	26242165	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26242165G>A	uc003abz.1	+	19	3717	c.3467G>A	c.(3466-3468)AGG>AAG	p.R1156K	MYO18B_uc003aca.1_Missense_Mutation_p.R1037K|MYO18B_uc010guy.1_Missense_Mutation_p.R1038K|MYO18B_uc010guz.1_Missense_Mutation_p.R1037K|MYO18B_uc011aka.1_Missense_Mutation_p.R310K|MYO18B_uc011akb.1_Missense_Mutation_p.R669K	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1156	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCCCTGCAGAGGAGCCGCATG	0.667													15	26					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26242168	26242168	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26242168G>A	uc003abz.1	+	19	3720	c.3470G>A	c.(3469-3471)AGC>AAC	p.S1157N	MYO18B_uc003aca.1_Missense_Mutation_p.S1038N|MYO18B_uc010guy.1_Missense_Mutation_p.S1039N|MYO18B_uc010guz.1_Missense_Mutation_p.S1038N|MYO18B_uc011aka.1_Missense_Mutation_p.S311N|MYO18B_uc011akb.1_Missense_Mutation_p.S670N	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1157	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CTGCAGAGGAGCCGCATGGTG	0.672													12	32					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26294333	26294333	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26294333G>A	uc003abz.1	+	29	4978	c.4728G>A	c.(4726-4728)AGG>AGA	p.R1576R	MYO18B_uc003aca.1_Silent_p.R1457R|MYO18B_uc010guy.1_Silent_p.R1458R|MYO18B_uc010guz.1_Silent_p.R1456R|MYO18B_uc011aka.1_Silent_p.R730R|MYO18B_uc011akb.1_Silent_p.R1089R	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1576	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AACTGAAGAGGAAGTGCCACC	0.493													28	72					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26343785	26343785	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26343785C>T	uc003abz.1	+	36	5989	c.5739C>T	c.(5737-5739)CTC>CTT	p.L1913L	MYO18B_uc003aca.1_Silent_p.L1794L|MYO18B_uc010guy.1_Silent_p.L1795L|MYO18B_uc010guz.1_Silent_p.L1793L|MYO18B_uc011aka.1_Silent_p.L1067L|MYO18B_uc011akb.1_Silent_p.L1426L	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1913	Tail.|Potential.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ACAAGGACCTCATTGCTCAGG	0.537													10	30					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26346380	26346380	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26346380G>A	uc003abz.1	+	37	6046	c.5796G>A	c.(5794-5796)GAG>GAA	p.E1932E	MYO18B_uc003aca.1_Silent_p.E1813E|MYO18B_uc010guy.1_Silent_p.E1814E|MYO18B_uc010guz.1_Silent_p.E1812E|MYO18B_uc011aka.1_Silent_p.E1086E|MYO18B_uc011akb.1_Silent_p.E1445E	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1932	Tail.|Potential.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TGCAGCTGGAGGAAGCCAAGA	0.368													6	24					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422620	26422620	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26422620C>T	uc003abz.1	+	43	6930	c.6680C>T	c.(6679-6681)CCC>CTC	p.P2227L	MYO18B_uc003aca.1_Missense_Mutation_p.P2108L|MYO18B_uc010guy.1_Missense_Mutation_p.P2109L|MYO18B_uc010guz.1_Missense_Mutation_p.P2107L|MYO18B_uc011aka.1_Missense_Mutation_p.P1381L|MYO18B_uc011akb.1_Missense_Mutation_p.P1740L|MYO18B_uc010gva.1_Missense_Mutation_p.P210L|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2227						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCTTCCTCTCCCCTGGCTTCT	0.577													12	45					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422713	26422713	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26422713G>A	uc003abz.1	+	43	7023	c.6773G>A	c.(6772-6774)CGG>CAG	p.R2258Q	MYO18B_uc003aca.1_Missense_Mutation_p.R2139Q|MYO18B_uc010guy.1_Missense_Mutation_p.R2140Q|MYO18B_uc010guz.1_Missense_Mutation_p.R2138Q|MYO18B_uc011aka.1_Missense_Mutation_p.R1412Q|MYO18B_uc011akb.1_Missense_Mutation_p.R1771Q|MYO18B_uc010gva.1_Missense_Mutation_p.R241Q|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2258						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GAAGGGCTCCGGAGGAAGAGA	0.627													12	17					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422810	26422810	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26422810G>A	uc003abz.1	+	43	7120	c.6870G>A	c.(6868-6870)AGG>AGA	p.R2290R	MYO18B_uc003aca.1_Silent_p.R2171R|MYO18B_uc010guy.1_Silent_p.R2172R|MYO18B_uc010guz.1_Silent_p.R2170R|MYO18B_uc011aka.1_Silent_p.R1444R|MYO18B_uc011akb.1_Silent_p.R1803R|MYO18B_uc010gva.1_Silent_p.R273R|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2290						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCACACTAAGGAGGGGCAGGG	0.637													4	20					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422852	26422852	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26422852G>A	uc003abz.1	+	43	7162	c.6912G>A	c.(6910-6912)AGG>AGA	p.R2304R	MYO18B_uc003aca.1_Silent_p.R2185R|MYO18B_uc010guy.1_Silent_p.R2186R|MYO18B_uc010guz.1_Silent_p.R2184R|MYO18B_uc011aka.1_Silent_p.R1458R|MYO18B_uc011akb.1_Silent_p.R1817R|MYO18B_uc010gva.1_Silent_p.R287R|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2304						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TCTCGCTGAGGGTTGGGGCAA	0.607													13	26					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422971	26422971	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26422971C>T	uc003abz.1	+	43	7281	c.7031C>T	c.(7030-7032)TCG>TTG	p.S2344L	MYO18B_uc003aca.1_Missense_Mutation_p.S2225L|MYO18B_uc010guy.1_Missense_Mutation_p.S2226L|MYO18B_uc010guz.1_Missense_Mutation_p.S2224L|MYO18B_uc011aka.1_Missense_Mutation_p.S1498L|MYO18B_uc011akb.1_Missense_Mutation_p.S1857L|MYO18B_uc010gva.1_Missense_Mutation_p.S327L|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2344				KS -> LT (in Ref. 5).		nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCCGAAAAGTCGAAAACCCAA	0.557													22	91					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688486	26688487	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26688486_26688487CC>TT	uc003acb.2	+	2	365_366	c.209_210CC>TT	c.(208-210)CCC>CTT	p.P70L	SEZ6L_uc003acc.2_Missense_Mutation_p.P70L|SEZ6L_uc011akc.1_Missense_Mutation_p.P70L|SEZ6L_uc003acd.2_Missense_Mutation_p.P70L|SEZ6L_uc011akd.1_Missense_Mutation_p.P70L|SEZ6L_uc003ace.2_Missense_Mutation_p.P70L|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	70	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GTAACAGCGCCCCCCAGTTCCT	0.634													8	42					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688639	26688639	+	Missense_Mutation	SNP	C	T	T	rs151261975		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26688639C>T	uc003acb.2	+	2	518	c.362C>T	c.(361-363)TCG>TTG	p.S121L	SEZ6L_uc003acc.2_Missense_Mutation_p.S121L|SEZ6L_uc011akc.1_Missense_Mutation_p.S121L|SEZ6L_uc003acd.2_Missense_Mutation_p.S121L|SEZ6L_uc011akd.1_Missense_Mutation_p.S121L|SEZ6L_uc003ace.2_Missense_Mutation_p.S121L|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	121	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						AAACTGCCTTCGCTCAAGCAG	0.652													9	33					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688703	26688703	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26688703C>T	uc003acb.2	+	2	582	c.426C>T	c.(424-426)GTC>GTT	p.V142V	SEZ6L_uc003acc.2_Silent_p.V142V|SEZ6L_uc011akc.1_Silent_p.V142V|SEZ6L_uc003acd.2_Silent_p.V142V|SEZ6L_uc011akd.1_Silent_p.V142V|SEZ6L_uc003ace.2_Silent_p.V142V|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	142	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CAGCCACTGTCCAAAGGGCAG	0.662													12	35					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26690364	26690364	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26690364C>T	uc003acb.2	+	3	1098	c.942C>T	c.(940-942)GTC>GTT	p.V314V	SEZ6L_uc003acc.2_Silent_p.V314V|SEZ6L_uc011akc.1_Silent_p.V314V|SEZ6L_uc003acd.2_Silent_p.V314V|SEZ6L_uc011akd.1_Silent_p.V314V|SEZ6L_uc003ace.2_Silent_p.V314V|SEZ6L_uc003acf.1_Silent_p.V87V|SEZ6L_uc010gvc.1_Silent_p.V87V	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	314	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						ACGTGACAGTCTACACTGGCT	0.552													47	70					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26692881	26692881	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26692881G>A	uc003acb.2	+	4	1153	c.997G>A	c.(997-999)GAA>AAA	p.E333K	SEZ6L_uc003acc.2_Missense_Mutation_p.E333K|SEZ6L_uc011akc.1_Missense_Mutation_p.E333K|SEZ6L_uc003acd.2_Missense_Mutation_p.E333K|SEZ6L_uc011akd.1_Missense_Mutation_p.E333K|SEZ6L_uc003ace.2_Missense_Mutation_p.E333K|SEZ6L_uc003acf.1_Missense_Mutation_p.E106K|SEZ6L_uc010gvc.1_Missense_Mutation_p.E106K	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	333	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GTCCGATGGGGAACTGCTCTC	0.582													11	24					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26694975	26694976	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26694975_26694976CC>TT	uc003acb.2	+	5	1344_1345	c.1188_1189CC>TT	c.(1186-1191)CCCCGC>CCTTGC	p.R397C	SEZ6L_uc003acc.2_Missense_Mutation_p.R397C|SEZ6L_uc011akc.1_Missense_Mutation_p.R397C|SEZ6L_uc003acd.2_Missense_Mutation_p.R397C|SEZ6L_uc011akd.1_Missense_Mutation_p.R397C|SEZ6L_uc003ace.2_Missense_Mutation_p.R397C|SEZ6L_uc003acf.1_Missense_Mutation_p.R170C|SEZ6L_uc010gvc.1_Missense_Mutation_p.R170C	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	397	Sushi 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GCAACTTTCCCCGCCGGCCTGA	0.584													20	49					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26702046	26702046	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26702046G>A	uc003acb.2	+	6	1606	c.1450G>A	c.(1450-1452)GAA>AAA	p.E484K	SEZ6L_uc003acc.2_Missense_Mutation_p.E484K|SEZ6L_uc011akc.1_Missense_Mutation_p.E484K|SEZ6L_uc003acd.2_Missense_Mutation_p.E484K|SEZ6L_uc011akd.1_Missense_Mutation_p.E484K|SEZ6L_uc003ace.2_Missense_Mutation_p.E484K|SEZ6L_uc003acf.1_Missense_Mutation_p.E257K|SEZ6L_uc010gvc.1_Missense_Mutation_p.E257K	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	484	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CTGGACGATTGAAGCTCCAGA	0.552													26	57					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26736598	26736598	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26736598G>A	uc003acb.2	+	10	2368	c.2212G>A	c.(2212-2214)GAG>AAG	p.E738K	SEZ6L_uc003acc.2_Missense_Mutation_p.E738K|SEZ6L_uc011akc.1_Missense_Mutation_p.E738K|SEZ6L_uc003acd.2_Missense_Mutation_p.E738K|SEZ6L_uc011akd.1_Missense_Mutation_p.E738K|SEZ6L_uc003ace.2_Missense_Mutation_p.E738K|SEZ6L_uc003acf.1_Missense_Mutation_p.E511K|SEZ6L_uc010gvc.1_Missense_Mutation_p.E511K	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	738	CUB 3.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GAACTACATAGGTAGGTGTCT	0.428													7	49					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26743814	26743814	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26743814G>A	uc003acb.2	+	11	2498	c.2342G>A	c.(2341-2343)GGG>GAG	p.G781E	SEZ6L_uc003acc.2_Missense_Mutation_p.G781E|SEZ6L_uc011akc.1_Missense_Mutation_p.G781E|SEZ6L_uc003acd.2_Missense_Mutation_p.G781E|SEZ6L_uc011akd.1_Missense_Mutation_p.G781E|SEZ6L_uc003ace.2_Missense_Mutation_p.G781E|SEZ6L_uc003acf.1_Missense_Mutation_p.G554E|SEZ6L_uc010gvc.1_Missense_Mutation_p.G554E|SEZ6L_uc011ake.1_RNA	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	781	Sushi 3.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GACATCGTGGGGAGTGACACC	0.557													35	91					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26747146	26747146	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26747146C>T	uc003acb.2	+	12	2692	c.2536C>T	c.(2536-2538)CTG>TTG	p.L846L	SEZ6L_uc003acc.2_Silent_p.L846L|SEZ6L_uc011akc.1_Silent_p.L846L|SEZ6L_uc003acd.2_Intron|SEZ6L_uc011akd.1_Silent_p.L846L|SEZ6L_uc003ace.2_Silent_p.L846L|SEZ6L_uc003acf.1_Silent_p.L619L|SEZ6L_uc010gvc.1_Silent_p.L619L|SEZ6L_uc011ake.1_RNA	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	846	Sushi 4.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GAGTTCTCTTCTGACCTGCTA	0.552													39	77					0	0	1	0	0
ASPHD2	57168	broad.mit.edu	37	22	26830241	26830241	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26830241G>A	uc003acg.2	+	2	1057	c.660G>A	c.(658-660)ATG>ATA	p.M220I		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	220	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						GATGGAAAATGAACAGCACCC	0.532													20	61					0	0	1	0	0
HPS4	89781	broad.mit.edu	37	22	26860664	26860664	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26860664G>A	uc003acl.2	-	11	1591	c.932C>T	c.(931-933)CCC>CTC	p.P311L	HPS4_uc003aci.2_Missense_Mutation_p.P306L|HPS4_uc003acj.2_Missense_Mutation_p.P175L|HPS4_uc003ack.2_Missense_Mutation_p.P102L|HPS4_uc003acn.2_Missense_Mutation_p.P157L|HPS4_uc010gvd.1_Missense_Mutation_p.P329L|HPS4_uc003ach.2_Missense_Mutation_p.P46L	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a	311					lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						AGGGGATGTGGGATCTGGGGT	0.577									Hermansky-Pudlak_syndrome				24	78					0	0	1	0	0
TPST2	8459	broad.mit.edu	37	22	26936880	26936880	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26936880C>T	uc003acv.2	-	2	885	c.717G>A	c.(715-717)GAG>GAA	p.E239E	TPST2_uc003acw.2_Silent_p.E239E|TPST2_uc003acx.2_Silent_p.E239E|TPST2_uc011akf.1_Silent_p.E239E	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	239	Lumenal (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						GCACCAGCTGCTCGTAGTACA	0.597													18	51					0	0	1	0	0
TPST2	8459	broad.mit.edu	37	22	26937530	26937530	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:26937530G>A	uc003acv.2	-	2	235	c.67C>T	c.(67-69)CAG>TAG	p.Q23*	TPST2_uc003acw.2_Nonsense_Mutation_p.Q23*|TPST2_uc003acx.2_Nonsense_Mutation_p.Q23*|TPST2_uc011akf.1_Nonsense_Mutation_p.Q23*	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	23	Helical; Signal-anchor for type II membrane protein; (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						TGTCCCAGCTGAACCGCCAGC	0.741													3	18					0	0	1	0	0
CRYBA4	1413	broad.mit.edu	37	22	27018589	27018589	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:27018589G>A	uc003acz.3	+	2	64	c.29G>A	c.(28-30)GGA>GAA	p.G10E		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	10	N-terminal arm.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						AAGTCAGCGGGACCCTGGAAG	0.473													7	62					0	0	1	0	0
MN1	4330	broad.mit.edu	37	22	28193390	28193390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:28193390C>T	uc003adj.2	-	1	4097	c.3142G>A	c.(3142-3144)GAG>AAG	p.E1048K		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	1048							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						GTGCTCACCTCGTCCGAGGCG	0.627			T	ETV6	AML|meningioma								7	98					0	0	1	0	0
MN1	4330	broad.mit.edu	37	22	28193847	28193847	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:28193847C>T	uc003adj.2	-	1	3640	c.2685G>A	c.(2683-2685)GGG>GGA	p.G895G		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	895							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						TGCTACTGGTCCCGGACGGGC	0.711			T	ETV6	AML|meningioma								9	20					0	0	1	0	0
MN1	4330	broad.mit.edu	37	22	28194205	28194205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:28194205G>A	uc003adj.2	-	1	3282	c.2327C>T	c.(2326-2328)TCT>TTT	p.S776F		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	776							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						GCCGCCACCAGAGCTGCCACC	0.736			T	ETV6	AML|meningioma								5	8					0	0	1	0	0
ZNRF3	84133	broad.mit.edu	37	22	29446228	29446228	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29446228C>T	uc003aeg.2	+	8	1924	c.1759C>T	c.(1759-1761)CTC>TTC	p.L587F	ZNRF3_uc003aeh.1_Missense_Mutation_p.L587F	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	687	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						AGAAGTGGGGCTCGAGGCTTC	0.667													8	73					0	0	1	0	0
EWSR1	2130	broad.mit.edu	37	22	29695762	29695762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29695762C>T	uc003aet.2	+	16	2180	c.1852C>T	c.(1852-1854)CCT>TCT	p.P618S	EWSR1_uc003aev.2_Missense_Mutation_p.P623S|EWSR1_uc003aew.2_Missense_Mutation_p.P562S|EWSR1_uc003aex.2_Missense_Mutation_p.P617S|EWSR1_uc003aey.2_Missense_Mutation_p.P413S|EWSR1_uc003aez.2_Missense_Mutation_p.P279S	NM_005243	NP_005234	Q01844	EWS_HUMAN	Ewing sarcoma breakpoint region 1 isoform 2	618	Arg/Gly/Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	calmodulin binding|nucleotide binding|RNA binding|zinc ion binding		EWSR1/FLI1(2266)|EWSR1/ATF1(323)|EWSR1/WT1(231)|EWSR1/ERG(162)|EWSR1/NR4A3(140)|EWSR1/DDIT3(43)|EWSR1/CREB1(42)|EWSR1/FEV(10)|EWSR1/POU5F1(10)|EWSR1/ETV1(7)|EWSR1/ETV4(6)|EWSR1/ZNF384(4)|EWSR1/PBX1(3)|EWSR1/SP3(3)|EWSR1/PATZ1(2)	bone(2526)|soft_tissue(702)|skin(8)|autonomic_ganglia(4)|haematopoietic_and_lymphoid_tissue(4)|salivary_gland(2)|central_nervous_system(2)|NS(2)|pancreas(2)|lung(1)|ovary(1)	3254						ACGAGGTGGCCCTGGGGGGCC	0.597			T	FLI1|ERG|ZNF278|NR4A3|FEV|ATF1|ETV1|ETV4|WT1|ZNF384|CREB1|POU5F1| PBX1	Ewing sarcoma| desmoplastic small round cell tumor |ALL|clear cell sarcoma|sarcoma|myoepithelioma								7	8					0	0	1	0	0
AP1B1	162	broad.mit.edu	37	22	29735010	29735010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29735010G>A	uc003afj.2	-	16	2316	c.2132C>T	c.(2131-2133)ACC>ATC	p.T711I	AP1B1_uc003afi.2_Missense_Mutation_p.T704I|AP1B1_uc003afk.2_Missense_Mutation_p.T704I|AP1B1_uc003afl.2_Missense_Mutation_p.T704I|AP1B1_uc011ako.1_Missense_Mutation_p.T264I	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	711	Pro-rich (stalk region).				endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						TCCTGACAGGGTGCCCACGCC	0.557													64	145					0	0	1	0	0
AP1B1	162	broad.mit.edu	37	22	29752501	29752501	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29752501G>A	uc003afj.2	-	6	814	c.630C>T	c.(628-630)GCC>GCT	p.A210A	AP1B1_uc003afi.2_Silent_p.A210A|AP1B1_uc003afk.2_Silent_p.A210A|AP1B1_uc003afl.2_Silent_p.A210A	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	210					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						ACTCATTGAGGGCTGTCAGCA	0.602													20	35					0	0	1	0	0
RFPL1	5988	broad.mit.edu	37	22	29837733	29837733	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29837733G>A	uc003afn.2	+	2	785	c.576G>A	c.(574-576)TGG>TGA	p.W192*	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	192	B30.2/SPRY.						zinc ion binding				0						GCACAGAATGGGACCTGGGAG	0.567													44	129					0	0	1	0	0
RFPL1	5988	broad.mit.edu	37	22	29837927	29837927	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29837927C>T	uc003afn.2	+	2	979	c.770C>T	c.(769-771)TCC>TTC	p.S257F	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	257	B30.2/SPRY.						zinc ion binding				0						CAGAACGTTTCCTTTTTTGAT	0.507													35	97					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29879498	29879498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29879498G>A	uc003afo.2	+	2	1089	c.1018G>A	c.(1018-1020)GAC>AAC	p.D340N		NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	340	Coil 2B.|Rod.				cell death|nervous system development	neurofilament					0						AAGCACCAAGGACTCACTGGA	0.612													26	102					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29885004	29885004	+	Missense_Mutation	SNP	G	A	A	rs59297913		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29885004G>A	uc003afo.2	+	4	1446	c.1375G>A	c.(1375-1377)GAA>AAA	p.E459K	NEFH_uc003afp.2_5'Flank	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	459	Tail.				cell death|nervous system development	neurofilament					0						GATTGTGGAGGAACAGACAGA	0.274													17	48					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29885060	29885060	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29885060G>A	uc003afo.2	+	4	1502	c.1431G>A	c.(1429-1431)GAG>GAA	p.E477E	NEFH_uc003afp.2_5'Flank	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	477	Tail.				cell death|nervous system development	neurofilament					0						aggagaaagaggccaaagagg	0.234													13	20					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29885727	29885727	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29885727G>A	uc003afo.2	+	4	2169	c.2098G>A	c.(2098-2100)GAA>AAA	p.E700K	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	706	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.|20.				cell death|nervous system development	neurofilament					0						CCCAGTGAAGGAAGAAGCAAA	0.557													53	145					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29886152	29886152	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29886152G>A	uc003afo.2	+	4	2594	c.2523G>A	c.(2521-2523)AAG>AAA	p.K841K	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	847	Tail.				cell death|nervous system development	neurofilament					0						CCCCAAAGAAGGCAGAGGAAG	0.547													4	28					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29886201	29886201	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29886201G>A	uc003afo.2	+	4	2643	c.2572G>A	c.(2572-2574)GAC>AAC	p.D858N	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	864	Tail.				cell death|nervous system development	neurofilament					0						GGAGAAGAAGGACAGCAAGAA	0.527													8	23					0	0	1	0	0
NIPSNAP1	8508	broad.mit.edu	37	22	29956781	29956781	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29956781C>T	uc003afx.3	-	8	721	c.648G>A	c.(646-648)GAG>GAA	p.E216E	NIPSNAP1_uc011akp.1_Silent_p.E196E	NM_003634	NP_003625	Q9BPW8	NIPS1_HUMAN	nipsnap homolog 1	216								p.?(1)		skin(1)	1						CGCCCACTGCCTCCTGGTTCT	0.557													51	128					0	0	1	0	0
NIPSNAP1	8508	broad.mit.edu	37	22	29957530	29957530	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:29957530G>A	uc003afx.3	-	6	617	c.544C>T	c.(544-546)CCC>TCC	p.P182S	NIPSNAP1_uc011akp.1_Missense_Mutation_p.P162S	NM_003634	NP_003625	Q9BPW8	NIPS1_HUMAN	nipsnap homolog 1	182								p.?(1)		skin(1)	1						TAGATGTTGGGACCCATTCTG	0.582													33	78					0	0	1	0	0
ASCC2	84164	broad.mit.edu	37	22	30202214	30202214	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30202214G>A	uc003agr.2	-	12	1256	c.1151C>T	c.(1150-1152)TCA>TTA	p.S384L	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Missense_Mutation_p.S384L|ASCC2_uc011akr.1_Missense_Mutation_p.S308L	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	384					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			CAAGACTGATGAGGCCTGCTG	0.567													26	60					0	0	1	0	0
ASCC2	84164	broad.mit.edu	37	22	30202521	30202521	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30202521G>A	uc003agr.2	-	11	1143	c.1038C>T	c.(1036-1038)TTC>TTT	p.F346F	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Silent_p.F346F|ASCC2_uc011akr.1_Silent_p.F270F	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	346					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			ACTCTTCGATGAAGCCCTGAA	0.552													12	30					0	0	1	0	0
MTMR3	8897	broad.mit.edu	37	22	30398934	30398934	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30398934G>A	uc003agv.3	+	9	951	c.623G>A	c.(622-624)AGT>AAT	p.S208N	MTMR3_uc003agu.3_Missense_Mutation_p.S208N|MTMR3_uc003agw.3_Missense_Mutation_p.S208N	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	208	Myotubularin phosphatase.				phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			GAACTGGAAAGTGTATCAAGT	0.507													37	77					0	0	1	0	0
LIF	3976	broad.mit.edu	37	22	30639682	30639682	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30639682C>T	uc003agz.2	-	3	679	c.567G>A	c.(565-567)GGG>GGA	p.G189G	LIF_uc011aks.1_3'UTR|uc003aha.2_5'Flank	NM_002309	NP_002300	P15018	LIF_HUMAN	leukemia inhibitory factor (cholinergic	189					immune response|leukemia inhibitory factor signaling pathway|negative regulation of hormone secretion|positive regulation of cell proliferation|positive regulation of macrophage differentiation|positive regulation of MAPKKK cascade|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of metanephric nephron tubule epithelial cell differentiation		cytokine activity|growth factor activity|leukemia inhibitory factor receptor binding				0			Epithelial(10;0.171)			GCTTATACTTCCCCAGGAGTT	0.567													47	105					0	0	1	0	0
GATSL3	652968	broad.mit.edu	37	22	30682303	30682303	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30682303G>A	uc003ahd.2	-	6	822	c.692C>T	c.(691-693)TCC>TTC	p.S231F	GATSL3_uc003ahc.2_Intron|GATSL3_uc003ahe.2_Intron|GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_Intron|GATSL3_uc010gvq.2_Intron|GATSL3_uc003ahi.2_Intron|GATSL3_uc010gvr.2_3'UTR	NM_001037666	NP_001032755	Q8WTX7	GATL3_HUMAN	GATS protein-like 3	231										breast(1)	1						CTCGATGAGGGAGAAGGCAAA	0.592													10	49					0	0	1	0	0
SF3A1	10291	broad.mit.edu	37	22	30742459	30742459	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30742459G>A	uc003ahl.2	-	3	367	c.235C>T	c.(235-237)CCC>TCC	p.P79S		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	79	SURP motif 1.				nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						TTGAACTTGGGGTTGTTGATC	0.517													38	115					0	0	1	0	0
SF3A1	10291	broad.mit.edu	37	22	30742481	30742481	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30742481G>A	uc003ahl.2	-	3	345	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	71	SURP motif 1.				nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						CGTTCTGTCGGATCCTAGCTT	0.483													44	92					0	0	1	0	0
SEC14L3	266629	broad.mit.edu	37	22	30867933	30867933	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30867933C>T	uc003ahy.2	-	1	102	c.13G>A	c.(13-15)GTT>ATT	p.V5I	SEC14L3_uc003ahz.2_5'UTR|SEC14L3_uc003aia.2_5'UTR|SEC14L3_uc003aib.2_5'UTR	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	5						integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	AGGTCTCCAACTCGGCCGCTC	0.632													39	82					0	0	1	0	0
SEC14L4	284904	broad.mit.edu	37	22	30887889	30887889	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30887889C>T	uc003aid.2	-	10	943	c.843G>A	c.(841-843)ACG>ACA	p.T281T	SEC14L4_uc011akz.1_Silent_p.T281T|SEC14L4_uc003aie.2_Silent_p.T266T|SEC14L4_uc003aif.2_Silent_p.T227T	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	281	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	CCACGGACCTCGTGTGCTCAT	0.622													17	36					0	0	1	0	0
SEC14L4	284904	broad.mit.edu	37	22	30891358	30891358	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30891358G>A	uc003aid.2	-	5	406	c.306C>T	c.(304-306)ATC>ATT	p.I102I	SEC14L4_uc011akz.1_Silent_p.I102I|SEC14L4_uc003aie.2_Silent_p.I87I|SEC14L4_uc003aif.2_Silent_p.I48I	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	102	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	GGGACCCAATGATGTTGAAGT	0.547													25	67					0	0	1	0	0
SEC14L4	284904	broad.mit.edu	37	22	30891955	30891955	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30891955C>T	uc003aid.2	-	3	234	c.134G>A	c.(133-135)CGA>CAA	p.R45Q	SEC14L4_uc011akz.1_Missense_Mutation_p.R45Q|SEC14L4_uc003aie.2_Missense_Mutation_p.E14K|SEC14L4_uc003aif.2_5'UTR	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	45						integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	GTCAAAGTTTCGAGCTGCAAG	0.502													5	21					0	0	1	0	0
SEC14L4	284904	broad.mit.edu	37	22	30899683	30899683	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30899683G>C	uc003aid.2	-	2	211	c.111C>G	c.(109-111)TTC>TTG	p.F37L	SEC14L4_uc011akz.1_Missense_Mutation_p.F37L|SEC14L4_uc003aie.2_Missense_Mutation_p.S6C|SEC14L4_uc003aif.2_5'UTR	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	37						integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	AGCGCAGGAGGAAGTAGTCAT	0.612													14	42					0	0	1	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30951447	30951447	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:30951447G>A	uc003aig.1	-	4	905	c.765C>T	c.(763-765)TTC>TTT	p.F255F	GAL3ST1_uc003aih.1_Silent_p.F255F|GAL3ST1_uc003aii.1_Silent_p.F255F|GAL3ST1_uc010gvz.1_Silent_p.F255F	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	255	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						GCGACTCGTCGAAGTACTCTT	0.647													30	112					0	0	1	0	0
SLC35E4	339665	broad.mit.edu	37	22	31032727	31032727	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31032727G>A	uc003ais.1	+	1	935	c.290G>A	c.(289-291)GGG>GAG	p.G97E	SLC35E4_uc003ait.2_Missense_Mutation_p.G85E	NM_001001479	NP_001001479	Q6ICL7	S35E4_HUMAN	solute carrier family 35, member E4	97						integral to membrane					0						TGCCACCGGGGGGCACGGCGC	0.667													8	20					0	0	1	0	0
SLC35E4	339665	broad.mit.edu	37	22	31042716	31042716	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31042716G>A	uc003ais.1	+	2	1396	c.751G>A	c.(751-753)GAC>AAC	p.D251N	SLC35E4_uc003ait.2_Intron	NM_001001479	NP_001001479	Q6ICL7	S35E4_HUMAN	solute carrier family 35, member E4	251	Leu-rich.					integral to membrane					0						CACTGCTGGCGACTCTCGCCT	0.667													8	30					0	0	1	0	0
OSBP2	23762	broad.mit.edu	37	22	31091248	31091248	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31091248C>T	uc003aiy.1	+	1	456	c.352C>T	c.(352-354)CCC>TCC	p.P118S	OSBP2_uc011ala.1_Intron|OSBP2_uc010gwc.1_Intron|OSBP2_uc003aix.1_Missense_Mutation_p.P118S|OSBP2_uc011alb.1_Missense_Mutation_p.P118S|OSBP2_uc003aiz.1_Missense_Mutation_p.P118S	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	118					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						AGGGGCTGGGCCCTTCACTAA	0.687													27	49					0	0	1	0	0
OSBP2	23762	broad.mit.edu	37	22	31286729	31286729	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31286729G>A	uc003aiy.1	+	8	1742	c.1638G>A	c.(1636-1638)GAG>GAA	p.E546E	OSBP2_uc011ala.1_Silent_p.E380E|OSBP2_uc010gwc.1_Silent_p.E373E|OSBP2_uc011alb.1_Silent_p.E497E|OSBP2_uc003aiz.1_Silent_p.E545E|OSBP2_uc003aja.1_Silent_p.E179E|OSBP2_uc011alc.1_Silent_p.E288E|OSBP2_uc003ajb.2_Silent_p.E91E|OSBP2_uc011ald.1_Silent_p.E90E|OSBP2_uc010gwd.1_Silent_p.E91E	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	546					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						ACTTCAATGAGCCCCTGTCCA	0.512											OREG0026467	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	37					0	0	1	0	0
OSBP2	23762	broad.mit.edu	37	22	31286903	31286903	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31286903G>A	uc003aiy.1	+	8	1916	c.1812G>A	c.(1810-1812)GGG>GGA	p.G604G	OSBP2_uc011ala.1_Silent_p.G438G|OSBP2_uc010gwc.1_Silent_p.G431G|OSBP2_uc011alb.1_Silent_p.G555G|OSBP2_uc003aiz.1_Silent_p.G603G|OSBP2_uc003aja.1_Silent_p.G237G|OSBP2_uc011alc.1_Silent_p.G346G|OSBP2_uc003ajb.2_Silent_p.G149G|OSBP2_uc011ald.1_Silent_p.G148G|OSBP2_uc010gwd.1_Silent_p.G149G	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	604					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						CCATGCTGGGGGAGACCTTCG	0.662											OREG0026467	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	50					0	0	1	0	0
MORC2	22880	broad.mit.edu	37	22	31337958	31337958	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31337958G>A	uc003aje.1	-	9	1796	c.432C>T	c.(430-432)CTC>CTT	p.L144L		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	206							ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						CATTATCCATGAGTTTGAGAT	0.498													61	125					0	0	1	0	0
SMTN	6525	broad.mit.edu	37	22	31487759	31487759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31487759C>T	uc003ajl.1	+	11	1776	c.1558C>T	c.(1558-1560)CGG>TGG	p.R520W	SMTN_uc003ajk.1_Missense_Mutation_p.R520W|SMTN_uc003ajm.1_Missense_Mutation_p.R520W|SMTN_uc011ale.1_Missense_Mutation_p.R574W|SMTN_uc011alf.1_Missense_Mutation_p.R576W|SMTN_uc003ajn.1_Missense_Mutation_p.R512W|SMTN_uc011alg.1_Intron|SMTN_uc003ajo.1_5'Flank|SMTN_uc011alh.1_5'Flank|SMTN_uc010gwe.1_5'Flank	NM_006932	NP_008863	P53814	SMTN_HUMAN	smoothelin isoform c	520					muscle organ development|smooth muscle contraction	actin cytoskeleton|cytoplasm	actin binding|structural constituent of muscle			large_intestine(2)|pancreas(1)	3						GACCCTGGCTCGGCTGGGCAG	0.662													14	17					0	0	1	0	0
INPP5J	27124	broad.mit.edu	37	22	31521797	31521797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31521797C>T	uc003aju.3	+	2	1164	c.1072C>T	c.(1072-1074)CGC>TGC	p.R358C	INPP5J_uc010gwf.2_Missense_Mutation_p.R358C|INPP5J_uc003ajv.3_Intron|INPP5J_uc003ajs.3_Intron|INPP5J_uc011alk.1_Missense_Mutation_p.R291C|INPP5J_uc010gwg.2_Intron|INPP5J_uc003ajw.2_Intron|INPP5J_uc003ajt.3_Intron|INPP5J_uc003ajx.2_5'Flank|INPP5J_uc003ajy.2_5'Flank|INPP5J_uc003ajz.2_5'Flank	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	358	Pro-rich.					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						CTCCCCGAATCGCTCTCCCTG	0.687													4	10					0	0	1	0	0
INPP5J	27124	broad.mit.edu	37	22	31524554	31524554	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31524554C>T	uc003aju.3	+	9	2199	c.2107C>T	c.(2107-2109)CTC>TTC	p.L703F	INPP5J_uc003ajv.3_Missense_Mutation_p.L336F|INPP5J_uc003ajs.3_Missense_Mutation_p.L336F|INPP5J_uc011alk.1_Missense_Mutation_p.L636F|INPP5J_uc010gwg.2_Missense_Mutation_p.L268F|INPP5J_uc003ajw.2_Missense_Mutation_p.L139F|INPP5J_uc003ajt.3_Missense_Mutation_p.L335F|INPP5J_uc003ajx.2_Missense_Mutation_p.L68F|INPP5J_uc003ajy.2_Missense_Mutation_p.L68F|INPP5J_uc003ajz.2_Missense_Mutation_p.L143F	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	703	Catalytic (Potential).					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						GAGCCACCGACTCCAGGTGAC	0.607													27	53					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31532917	31532917	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31532917G>A	uc003aka.2	-	5	1305	c.1176C>T	c.(1174-1176)CTC>CTT	p.L392L		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	392					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						TGCAGTGGAAGAGGGGCTCTT	0.687													6	19					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31533801	31533801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31533801G>A	uc003aka.2	-	4	1090	c.961C>T	c.(961-963)CCC>TCC	p.P321S		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	321					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						GCTTTGCTGGGGCGCTTGGAC	0.652													69	162					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31533829	31533829	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31533829C>T	uc003aka.2	-	4	1062	c.933G>A	c.(931-933)GGG>GGA	p.G311G		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	311					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						GATGTGGTGGCCCCTTCCGAA	0.652													61	139					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31533831	31533831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31533831C>T	uc003aka.2	-	4	1060	c.931G>A	c.(931-933)GGG>AGG	p.G311R		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	311					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						TGTGGTGGCCCCTTCCGAAGG	0.647													59	138					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31533948	31533948	+	Missense_Mutation	SNP	G	A	A	rs145614024		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31533948G>A	uc003aka.2	-	4	943	c.814C>T	c.(814-816)CGC>TGC	p.R272C		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	272	Phospholipase A2-like.				cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						GGCTGCAGGCGAGCGAGGGGC	0.647													19	59					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31535929	31535929	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31535929C>T	uc003aka.2	-	1	541	c.412G>A	c.(412-414)GGA>AGA	p.G138R		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	138					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						CCAGGGACTCCACTCTGCCCT	0.592													10	47					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31536324	31536324	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31536324C>T	uc003aka.2	-	1	146	c.17G>A	c.(16-18)GGG>GAG	p.G6E		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	6					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						CCCAAACAGCCCTGCCTGAAC	0.677													28	68					0	0	1	0	0
LIMK2	3985	broad.mit.edu	37	22	31608409	31608409	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31608409G>A	uc003akh.2	+	1	160	c.15G>A	c.(13-15)GCG>GCA	p.A5A	LIMK2_uc003akg.2_5'UTR|LIMK2_uc003aki.2_Silent_p.A5A	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	5						mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						CCGCGCTGGCGGGTAAGGAAG	0.672													14	22					0	0	1	0	0
LIMK2	3985	broad.mit.edu	37	22	31654358	31654358	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31654358G>A	uc003akh.2	+	3	343	c.198G>A	c.(196-198)GGG>GGA	p.G66G	LIMK2_uc003akg.2_5'UTR|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Silent_p.G45G|LIMK2_uc003akk.2_Silent_p.G45G|LIMK2_uc011aln.1_5'UTR	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	66						mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						ACTACTGGGGGAAGTTTGGGG	0.512													41	56					0	0	1	0	0
PATZ1	23598	broad.mit.edu	37	22	31740842	31740842	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31740842G>A	uc003akq.2	-	1	1408	c.747C>T	c.(745-747)TCC>TCT	p.S249S	PATZ1_uc003akp.2_Silent_p.S249S|PATZ1_uc003akr.2_Silent_p.S249S|PATZ1_uc003aks.2_Silent_p.S249S|uc003akt.2_5'Flank	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	249					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						TGGGGAATGGGGAAGTCAGCA	0.642													4	35					0	0	1	0	0
DRG1	4733	broad.mit.edu	37	22	31807018	31807018	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31807018C>T	uc003aku.2	+	4	494	c.363C>T	c.(361-363)ATC>ATT	p.I121I		NM_004147	NP_004138	Q9Y295	DRG1_HUMAN	developmentally regulated GTP binding protein 1	121	GTP (By similarity).|G.				multicellular organismal development|transcription, DNA-dependent	cytoplasm|intermediate filament cytoskeleton|nucleus	GTP binding|transcription factor binding			central_nervous_system(1)	1						TCCCAGGTATCATTGAAGGTG	0.413													23	58					0	0	1	0	0
SFI1	9814	broad.mit.edu	37	22	31952984	31952984	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:31952984C>T	uc003ale.2	+	7	994	c.601C>T	c.(601-603)CGT>TGT	p.R201C	SFI1_uc003ald.1_Missense_Mutation_p.R177C|SFI1_uc003alf.2_Missense_Mutation_p.R201C|SFI1_uc003alg.2_Missense_Mutation_p.R119C|SFI1_uc011alp.1_Missense_Mutation_p.R119C|SFI1_uc011alq.1_Missense_Mutation_p.R177C|SFI1_uc003alh.2_Intron	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	201	HAT 2.				G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						CGTGGTTGTTCGTAGGACCAA	0.468													20	57					0	0	1	0	0
PISD	23761	broad.mit.edu	37	22	32017780	32017780	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32017780G>A	uc003alm.3	-	4	420	c.413C>T	c.(412-414)CCC>CTC	p.P138L	PISD_uc003alk.2_Missense_Mutation_p.P104L|PISD_uc003all.2_Missense_Mutation_p.P103L|PISD_uc011alr.1_Missense_Mutation_p.P103L|PISD_uc003aln.3_Missense_Mutation_p.P138L	NM_014338	NP_055153	Q9UG56	PISD_HUMAN	phosphatidylserine decarboxylase	138					phospholipid biosynthetic process	mitochondrion	phosphatidylserine decarboxylase activity			central_nervous_system(2)|ovary(1)	3					Phosphatidylserine(DB00144)	GCTGTAGACGGGCCTGCGCAG	0.617													39	53					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32200883	32200883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32200883C>T	uc003als.2	+	17	1341	c.1199C>T	c.(1198-1200)CCT>CTT	p.P400L	DEPDC5_uc011als.1_Missense_Mutation_p.P400L|DEPDC5_uc011alu.1_Missense_Mutation_p.P400L|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.P400L|DEPDC5_uc003alr.1_Missense_Mutation_p.P400L|DEPDC5_uc011alt.1_Missense_Mutation_p.P372L	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	400					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TATAATATCCCTCACTGGATA	0.433													21	230					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32233121	32233121	+	Silent	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32233121T>G	uc003als.2	+	26	2449	c.2307T>G	c.(2305-2307)CTT>CTG	p.L769L	DEPDC5_uc011als.1_Silent_p.L700L|DEPDC5_uc011alu.1_Silent_p.L778L|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.L769L|DEPDC5_uc003alu.2_Silent_p.L218L|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alw.1_Silent_p.L99L|DEPDC5_uc003alw.2_Silent_p.L67L|DEPDC5_uc011alx.1_5'UTR	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	769					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						ATGATCTCCTTCCAGAAGCAG	0.532													8	88					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32239700	32239700	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32239700C>T	uc003als.2	+	29	2818	c.2676C>T	c.(2674-2676)TTC>TTT	p.F892F	DEPDC5_uc011als.1_Silent_p.F823F|DEPDC5_uc011alu.1_Silent_p.F901F|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.F892F|DEPDC5_uc003alu.2_Silent_p.F341F|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alw.1_Silent_p.F222F|DEPDC5_uc003alw.2_Silent_p.F190F|DEPDC5_uc011alx.1_Intron|DEPDC5_uc010gwk.2_5'Flank	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	892					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						ACTCAGAGTTCGTCTCCTGCT	0.493													46	100					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32272248	32272248	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32272248C>T	uc003als.2	+	36	3851	c.3709C>T	c.(3709-3711)CGA>TGA	p.R1237*	DEPDC5_uc011als.1_Nonsense_Mutation_p.R1168*|DEPDC5_uc011alu.1_Nonsense_Mutation_p.R1268*|DEPDC5_uc011alv.1_Intron|DEPDC5_uc003alt.2_Nonsense_Mutation_p.R1259*|DEPDC5_uc003alu.2_Nonsense_Mutation_p.R686*|DEPDC5_uc003alv.2_Intron|DEPDC5_uc003alw.2_Nonsense_Mutation_p.R535*|DEPDC5_uc011alx.1_Nonsense_Mutation_p.R85*|DEPDC5_uc010gwk.2_Nonsense_Mutation_p.R263*|DEPDC5_uc011aly.1_Nonsense_Mutation_p.R85*	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1237					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						AGAGCCCGACCGAGGTTAGAG	0.532													45	90					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32289578	32289578	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32289578C>T	uc003als.2	+	38	4093	c.3951C>T	c.(3949-3951)GTC>GTT	p.V1317V	DEPDC5_uc011als.1_Silent_p.V1248V|DEPDC5_uc011alu.1_Silent_p.V1348V|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.V1339V|DEPDC5_uc003alu.2_Silent_p.V766V|DEPDC5_uc003alv.2_RNA|DEPDC5_uc003alw.2_Silent_p.V615V|DEPDC5_uc011alx.1_Silent_p.V165V|DEPDC5_uc010gwk.2_Silent_p.V343V|DEPDC5_uc011aly.1_Silent_p.V165V	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1317					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CTGCCACTGTCCCAGAGCAGA	0.493													26	55					0	0	1	0	0
SLC5A1	6523	broad.mit.edu	37	22	32445998	32445998	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32445998G>A	uc003amc.2	+	2	436	c.204G>A	c.(202-204)TGG>TGA	p.W68*		NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	68	Helical; (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						TGGTGTGGTGGCCGGTAAGTT	0.453													106	165					0	0	1	0	0
SLC5A1	6523	broad.mit.edu	37	22	32498033	32498033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32498033G>A	uc003amc.2	+	13	1706	c.1474G>A	c.(1474-1476)GGA>AGA	p.G492R	SLC5A1_uc011alz.1_Missense_Mutation_p.G365R	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	492	Helical; (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						ACTGATCCTAGGACTTCTGAT	0.483													26	58					0	0	1	0	0
SLC5A1	6523	broad.mit.edu	37	22	32500794	32500794	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32500794C>T	uc003amc.2	+	14	1919	c.1687C>T	c.(1687-1689)CTG>TTG	p.L563L	SLC5A1_uc011alz.1_Silent_p.L436L	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	563	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						GTGTTGGAGCCTGCGCAACAG	0.498													11	57					0	0	1	0	0
SLC5A4	6527	broad.mit.edu	37	22	32650159	32650159	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32650159G>A	uc003ami.2	-	2	179	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	59	Extracellular (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						GACCAGCGAGGAAGAAGCCTC	0.498													25	47					0	0	1	0	0
SYN3	8224	broad.mit.edu	37	22	32914070	32914070	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:32914070C>T	uc003amx.2	-	12	1729	c.1570G>A	c.(1570-1572)GAA>AAA	p.E524K	SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Missense_Mutation_p.E523K|SYN3_uc011amc.1_Missense_Mutation_p.E158K	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	524	J; Pro-rich linker.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						TTGGACTCTTCACCCTGCTGG	0.602													32	71					0	0	1	0	0
SYN3	8224	broad.mit.edu	37	22	33260980	33260980	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:33260980G>A	uc003amx.2	-	5	792	c.633C>T	c.(631-633)CTC>CTT	p.L211L	SYN3_uc003amy.2_Silent_p.L211L|SYN3_uc003amz.2_Silent_p.L210L	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	211	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						AGATCTTAATGAGCTGAGAGA	0.453													66	147					0	0	1	0	0
LARGE	9215	broad.mit.edu	37	22	34000534	34000534	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:34000534G>A	uc003and.3	-	6	1081	c.502C>T	c.(502-504)CTG>TTG	p.L168L	LARGE_uc003ane.3_Silent_p.L168L|LARGE_uc010gwp.2_Silent_p.L168L|LARGE_uc011ame.1_Silent_p.L100L|LARGE_uc011amf.1_Silent_p.L168L	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	168	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				TGGAAGTGCAGAGGGTTCCGT	0.547													18	62					0	0	1	0	0
ISX	91464	broad.mit.edu	37	22	35478537	35478537	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:35478537C>T	uc003anj.2	+	2	1207	c.256C>T	c.(256-258)CGT>TGT	p.R86C	ISX_uc011amg.1_Missense_Mutation_p.R74C	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	86	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GCGGAGGGTTCGTACCACCTT	0.557													35	101					0	0	1	0	0
ISX	91464	broad.mit.edu	37	22	35478634	35478634	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:35478634G>A	uc003anj.2	+	2	1304	c.353G>A	c.(352-354)AGG>AAG	p.R118K	ISX_uc011amg.1_Missense_Mutation_p.R106K	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	118	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						CTGGCAGCCAGGATCAACCTC	0.572													17	59					0	0	1	0	0
MCM5	4174	broad.mit.edu	37	22	35813759	35813759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:35813759C>T	uc003anu.3	+	13	1707	c.1613C>T	c.(1612-1614)ACT>ATT	p.T538I	MCM5_uc010gwr.2_Missense_Mutation_p.T347I|MCM5_uc003anv.3_Missense_Mutation_p.T495I|MCM5_uc003anw.1_Missense_Mutation_p.T322I	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	538					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						CATGTCATCACTCTGCACGTG	0.577													51	106					0	0	1	0	0
RASD2	23551	broad.mit.edu	37	22	35947969	35947969	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:35947969G>A	uc003anx.2	+	3	896	c.691G>A	c.(691-693)GTC>ATC	p.V231I	RASD2_uc003any.2_Missense_Mutation_p.V231I	NM_014310	NP_055125	Q96D21	RHES_HUMAN	RASD family, member 2 precursor	231	Interaction with GNB1, GNB2 and GNB3.				locomotory behavior|positive regulation of protein kinase B signaling cascade|positive regulation of protein sumoylation|regulation of cAMP-mediated signaling	intracellular|plasma membrane	G-protein beta-subunit binding|GTP binding|GTPase activity			lung(2)|skin(1)	3						CTATGGCATGGTCTCGCCCTT	0.647													18	53					0	0	1	0	0
MB	4151	broad.mit.edu	37	22	36007060	36007060	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36007060C>T	uc003anz.2	-	2	269	c.189G>A	c.(187-189)AAG>AAA	p.K63K	MB_uc003aoa.2_Silent_p.K63K|MB_uc003aob.2_Silent_p.K63K	NM_005368	NP_005359	P02144	MYG_HUMAN	myoglobin	63							heme binding|oxygen transporter activity				0						CACCATGCTTCTTTAAGTCCT	0.547													18	91					0	0	1	0	0
APOL6	80830	broad.mit.edu	37	22	36055574	36055574	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36055574G>A	uc003aoe.2	+	3	1257	c.963G>A	c.(961-963)AGG>AGA	p.R321R	APOL6_uc003aod.2_RNA	NM_030641	NP_085144	Q9BWW8	APOL6_HUMAN	apolipoprotein L6	321					lipoprotein metabolic process	cytoplasm|extracellular region	lipid binding|lipid transporter activity				0						AGGAGTTAAGGGAGCATGTGT	0.438													10	58					0	0	1	0	0
RBM9	23543	broad.mit.edu	37	22	36142017	36142017	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36142017G>A	uc003aon.3	-	13	1376	c.1264C>T	c.(1264-1266)CCC>TCC	p.P422S	RBM9_uc003aog.3_Missense_Mutation_p.P328S|RBM9_uc003aol.3_Missense_Mutation_p.P347S|RBM9_uc003aoj.3_Missense_Mutation_p.P351S|RBM9_uc003aok.3_Silent_p.T334T|RBM9_uc003aoh.3_Silent_p.T337T|RBM9_uc003aom.3_Missense_Mutation_p.P329S|RBM9_uc010gwu.2_Silent_p.T337T|RBM9_uc003aoo.3_Missense_Mutation_p.P421S	NM_001082578	NP_001076047	O43251	RFOX2_HUMAN	RNA binding motif protein 9 isoform 5	361	Ala-rich.				estrogen receptor signaling pathway|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of cell proliferation|RNA splicing	cytoplasm|nucleus	nucleotide binding|RNA binding|transcription corepressor activity|transcription factor binding				0						GCATGGTAGGGGTCGGCTGTG	0.403													122	376					0	0	1	0	0
APOL3	80833	broad.mit.edu	37	22	36538042	36538042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36538042C>T	uc003aot.2	-	3	453	c.415G>A	c.(415-417)GAA>AAA	p.E139K	APOL3_uc003aoq.2_Missense_Mutation_p.E68K|APOL3_uc003aor.2_Missense_Mutation_p.E68K|APOL3_uc003aos.2_Missense_Mutation_p.E68K|APOL3_uc003aou.2_5'UTR|APOL3_uc003aov.2_5'UTR	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	139					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						TGCACATATTCGTCCTCAATA	0.428													30	62					0	0	1	0	0
APOL3	80833	broad.mit.edu	37	22	36556853	36556853	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36556853G>A	uc003aot.2	-	1	125	c.87C>T	c.(85-87)TTC>TTT	p.F29F	APOL3_uc003aoq.2_5'UTR|APOL3_uc003aor.2_5'UTR|APOL3_uc003aos.2_5'UTR|APOL3_uc003aou.2_Intron|APOL3_uc003aov.2_Intron	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	29					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						ACCCAAAAGGGAAAGTGAAAG	0.537													24	49					0	0	1	0	0
APOL4	80832	broad.mit.edu	37	22	36587196	36587196	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36587196C>T	uc003aox.2	-	6	1208	c.983G>A	c.(982-984)AGG>AAG	p.R328K	APOL4_uc003aow.2_Missense_Mutation_p.R325K|APOL4_uc010gww.2_Missense_Mutation_p.R170K	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	328					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						AGCCCACTGCCTCAGCGACTC	0.478													6	19					0	0	1	0	0
APOL4	80832	broad.mit.edu	37	22	36587388	36587388	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36587388C>T	uc003aox.2	-	6	1016	c.791G>A	c.(790-792)TGG>TAG	p.W264*	APOL4_uc003aow.2_Nonsense_Mutation_p.W261*|APOL4_uc010gww.2_Nonsense_Mutation_p.W106*	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	264					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						TACATATCGCCAAGCAATCAA	0.478													19	43					0	0	1	0	0
APOL4	80832	broad.mit.edu	37	22	36587447	36587447	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36587447C>T	uc003aox.2	-	6	957	c.732G>A	c.(730-732)GCG>GCA	p.A244A	APOL4_uc003aow.2_Silent_p.A241A|APOL4_uc010gww.2_Silent_p.A86A	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	244					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						GGACATCATTCGCAATCATTT	0.438													23	37					0	0	1	0	0
APOL4	80832	broad.mit.edu	37	22	36587770	36587770	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36587770G>A	uc003aox.2	-	6	634	c.409C>T	c.(409-411)CAC>TAC	p.H137Y	APOL4_uc003aow.2_Missense_Mutation_p.H134Y|APOL4_uc010gww.2_5'UTR	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	137					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						CAGCCTCTGTGGACCTTTTCA	0.483													12	74					0	0	1	0	0
APOL1	8542	broad.mit.edu	37	22	36653169	36653169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36653169G>A	uc003apf.2	+	3	253	c.85G>A	c.(85-87)GAA>AAA	p.E29K	APOL1_uc011amn.1_5'UTR|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Missense_Mutation_p.E45K|APOL1_uc011amo.1_Intron|APOL1_uc011amp.1_Missense_Mutation_p.E29K|APOL1_uc011amq.1_Intron|APOL1_uc010gwx.2_5'UTR	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	29					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						GAGGGCAGAGGAAGCTGGAGC	0.502													12	37					0	0	1	0	0
APOL1	8542	broad.mit.edu	37	22	36661548	36661548	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36661548G>A	uc003apf.2	+	6	834	c.666G>A	c.(664-666)GGG>GGA	p.G222G	APOL1_uc011amn.1_Silent_p.G99G|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Silent_p.G238G|APOL1_uc011amo.1_Silent_p.G99G|APOL1_uc011amp.1_Silent_p.G222G|APOL1_uc011amq.1_Silent_p.G204G|APOL1_uc010gwx.2_Silent_p.G99G	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	222					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						CTTTGACCGGGATTACCAGCA	0.557													24	99					0	0	1	0	0
APOL1	8542	broad.mit.edu	37	22	36661745	36661745	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36661745G>A	uc003apf.2	+	6	1031	c.863G>A	c.(862-864)CGA>CAA	p.R288Q	APOL1_uc011amn.1_Missense_Mutation_p.R165Q|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Missense_Mutation_p.R304Q|APOL1_uc011amo.1_Missense_Mutation_p.R165Q|APOL1_uc011amp.1_Missense_Mutation_p.R288Q|APOL1_uc011amq.1_Missense_Mutation_p.R270Q|APOL1_uc010gwx.2_Missense_Mutation_p.R165Q	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	288					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						GCCCTCAGACGAGCCAGAGCC	0.537													29	83					0	0	1	0	0
MYH9	4627	broad.mit.edu	37	22	36714350	36714350	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36714350G>A	uc003apg.2	-	11	1360	c.1129C>T	c.(1129-1131)CTC>TTC	p.L377F	MYH9_uc003aph.1_Missense_Mutation_p.L241F	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	377	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						ATACCCAAGAGATGGGACACC	0.473			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				100	228					0	0	1	0	0
FOXRED2	80020	broad.mit.edu	37	22	36900680	36900680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36900680G>A	uc003apn.3	-	2	769	c.661C>T	c.(661-663)CGT>TGT	p.R221C	FOXRED2_uc003apo.3_Missense_Mutation_p.R221C|FOXRED2_uc003app.3_Missense_Mutation_p.R221C	NM_024955	NP_079231	Q8IWF2	FXRD2_HUMAN	FAD-dependent oxidoreductase domain containing 2	221					ER-associated protein catabolic process	endoplasmic reticulum lumen	flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			lung(1)|kidney(1)	2						GAGTTCCCACGACCCAGGATC	0.567													18	45					0	0	1	0	0
CACNG2	10369	broad.mit.edu	37	22	36983516	36983516	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:36983516G>A	uc003aps.1	-	2	573	c.291C>T	c.(289-291)TTC>TTT	p.F97F		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	97					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						ACTCACGGAGGAAATATTCTG	0.512													41	94					0	0	1	0	0
CSF2RB	1439	broad.mit.edu	37	22	37319368	37319369	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37319368_37319369CC>TT	uc003aqa.3	+	3	376_377	c.159_160CC>TT	c.(157-162)GCCCAG>GCTTAG	p.Q54*	CSF2RB_uc003aqc.3_Nonsense_Mutation_p.Q54*	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	54	Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	CCCAGGATGCCCAGCGGCTCGT	0.634													11	41					0	0	1	0	0
CSF2RB	1439	broad.mit.edu	37	22	37325463	37325463	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37325463G>A	uc003aqa.3	+	5	628	c.411G>A	c.(409-411)AGG>AGA	p.R137R	CSF2RB_uc003aqc.3_Silent_p.R137R	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	137	Fibronectin type-III 1.|Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	CTGAGCCCAGGGACCTGCAGA	0.587													52	143					0	0	1	0	0
CSF2RB	1439	broad.mit.edu	37	22	37328890	37328890	+	Missense_Mutation	SNP	G	A	A	rs146404001	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37328890G>A	uc003aqa.3	+	9	1313	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	CSF2RB_uc003aqc.3_Missense_Mutation_p.E372K	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	366	Extracellular (Potential).|Fibronectin type-III 2.				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	AATGCGATACGAACACATAGA	0.567													9	32					0	0	1	0	0
CSF2RB	1439	broad.mit.edu	37	22	37333917	37333917	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37333917G>A	uc003aqa.3	+	14	2284	c.2067G>A	c.(2065-2067)AAG>AAA	p.K689K	CSF2RB_uc003aqc.3_Silent_p.K695K	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	689	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	AGGACCAAAAGGACAGCCCTG	0.637													5	40					0	0	1	0	0
CSF2RB	1439	broad.mit.edu	37	22	37334447	37334448	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37334447_37334448CC>TT	uc003aqa.3	+	14	2814_2815	c.2597_2598CC>TT	c.(2596-2598)CCC>CTT	p.P866L	CSF2RB_uc003aqc.3_Missense_Mutation_p.P872L	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	866	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	CAGGCTGTGCCCCAGGTGCCCG	0.594													43	162					0	0	1	0	0
C22orf33	339669	broad.mit.edu	37	22	37397962	37397962	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37397962C>T	uc003aqf.2	-	3	551	c.405G>A	c.(403-405)ACG>ACA	p.T135T	C22orf33_uc003aqe.2_Silent_p.T50T	NM_001163857	NP_001157329	O43247	EAN57_HUMAN	hypothetical protein LOC339669 isoform 1	135											0						CCTTCTGGTTCGTGGGCGTGC	0.622													4	25					0	0	1	0	0
TST	7263	broad.mit.edu	37	22	37407092	37407092	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37407092G>A	uc003aqg.2	-	2	1570	c.870C>T	c.(868-870)TCC>TCT	p.S290S	TST_uc003aqh.2_Silent_p.S290S	NM_003312	NP_003303	Q16762	THTR_HUMAN	thiosulfate sulfurtransferase	290					cyanate catabolic process|rRNA transport	mitochondrial matrix|plasma membrane	5S rRNA binding|thiosulfate sulfurtransferase activity				0						ACTTTCCCTGGGACACACGGC	0.602													32	103					0	0	1	0	0
TST	7263	broad.mit.edu	37	22	37407121	37407121	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37407121G>A	uc003aqg.2	-	2	1541	c.841C>T	c.(841-843)CGC>TGC	p.R281C	TST_uc003aqh.2_Missense_Mutation_p.R281C	NM_003312	NP_003303	Q16762	THTR_HUMAN	thiosulfate sulfurtransferase	281	Rhodanese 2.				cyanate catabolic process|rRNA transport	mitochondrial matrix|plasma membrane	5S rRNA binding|thiosulfate sulfurtransferase activity				0						GGGGCCCGGCGAAACCACTCG	0.642													46	93					0	0	1	0	0
KCTD17	79734	broad.mit.edu	37	22	37457582	37457582	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37457582C>T	uc010gxb.2	+	8	810	c.788C>T	c.(787-789)TCC>TTC	p.S263F	KCTD17_uc011amv.1_Missense_Mutation_p.S246F|KCTD17_uc010gxc.2_Missense_Mutation_p.P206S	NM_024681	NP_078957	Q8N5Z5	KCD17_HUMAN	potassium channel tetramerisation domain	270	Pro-rich.					voltage-gated potassium channel complex	identical protein binding|voltage-gated potassium channel activity				0						CTTGCAGGTTCCCGTCCGCAC	0.677													6	21					0	0	1	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37462938	37462938	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37462938C>T	uc003aqs.1	-	17	2319	c.2205G>A	c.(2203-2205)GAG>GAA	p.E735E	TMPRSS6_uc003aqt.1_Silent_p.E748E	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	735	Peptidase S1.|Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						AGCGATAGACCTCGCTGCACA	0.607													16	29					0	0	1	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37467050	37467050	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37467050G>A	uc003aqs.1	-	14	1719	c.1605C>T	c.(1603-1605)ACC>ACT	p.T535T	TMPRSS6_uc003aqt.1_Silent_p.T526T	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	535	LDL-receptor class A 3.|Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						CACACTGGAAGGTGAATGTCC	0.637													15	35					0	0	1	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37494459	37494459	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37494459C>A	uc003aqs.1	-	3	474	c.360G>T	c.(358-360)AAG>AAT	p.K120N	TMPRSS6_uc003aqt.1_Missense_Mutation_p.K111N|TMPRSS6_uc003aqu.2_Missense_Mutation_p.K111N	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	120	Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						TTCCTACCATCTTCTGGGCTT	0.557													121	283					4.38229e-66	4.41063e-66	1	1	0
IL2RB	3560	broad.mit.edu	37	22	37524322	37524322	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37524322C>T	uc003aqv.1	-	10	1601	c.1470G>A	c.(1468-1470)GAG>GAA	p.E490E		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	490	Cytoplasmic (Potential).				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	GCAGCACCAGCTCAGGGGGTG	0.667													12	37					0	0	1	0	0
C1QTNF6	114904	broad.mit.edu	37	22	37578762	37578762	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37578762G>A	uc003aqw.1	-	2	751	c.246C>T	c.(244-246)GAC>GAT	p.D82D	C1QTNF6_uc003aqx.1_Silent_p.D101D|C1QTNF6_uc003aqy.1_Silent_p.D101D|C1QTNF6_uc003aqz.1_Intron	NM_182486	NP_872292	Q9BXI9	C1QT6_HUMAN	C1q and tumor necrosis factor related protein 6	82	Collagen-like.					collagen					0						TTGGGCCTGGGTCCCCTTTGT	0.642													14	20					0	0	1	0	0
SSTR3	6753	broad.mit.edu	37	22	37602795	37602795	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37602795C>T	uc003ara.2	-	2	1110	c.1048G>A	c.(1048-1050)GAG>AAG	p.E350K	SSTR3_uc003arb.2_Missense_Mutation_p.E350K	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	350	Cytoplasmic (Potential).|Glu-rich (acidic).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						tcatcctcctcctcAGTCTTC	0.572													26	51					0	0	1	0	0
SSTR3	6753	broad.mit.edu	37	22	37602816	37602816	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37602816C>T	uc003ara.2	-	2	1089	c.1027G>A	c.(1027-1029)GGG>AGG	p.G343R	SSTR3_uc003arb.2_Missense_Mutation_p.G343R	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	343	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						TCCGGGGGCCCCACAGTGGGC	0.557													18	66					0	0	1	0	0
SSTR3	6753	broad.mit.edu	37	22	37602897	37602897	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37602897G>A	uc003ara.2	-	2	1008	c.946C>T	c.(946-948)CTC>TTC	p.L316F	SSTR3_uc003arb.2_Missense_Mutation_p.L316F	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	316	Helical; Name=7; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						CGGTAGGAGAGGAAGCCATAA	0.652													29	75					0	0	1	0	0
SSTR3	6753	broad.mit.edu	37	22	37603671	37603671	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37603671C>T	uc003ara.2	-	2	234	c.172G>A	c.(172-174)GGC>AGC	p.G58S	SSTR3_uc003arb.2_Missense_Mutation_p.G58S	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	58	Helical; Name=1; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						CCCAGCAGGCCCACCACGCAC	0.657													40	105					0	0	1	0	0
RAC2	5880	broad.mit.edu	37	22	37627425	37627425	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37627425G>A	uc003arc.2	-	5	411	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_002872	NP_002863	P15153	RAC2_HUMAN	ras-related C3 botulinum toxin substrate 2	98					axon guidance|platelet activation|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|protein binding			breast(2)|central_nervous_system(1)|skin(1)	4						GCACTTCTGGGAACCACTGGG	0.627													21	51					0	0	1	0	0
CYTH4	27128	broad.mit.edu	37	22	37690748	37690748	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37690748C>T	uc003arf.2	+	3	266	c.150C>T	c.(148-150)TTC>TTT	p.F50F	CYTH4_uc003ard.3_Silent_p.F50F|CYTH4_uc003are.2_Silent_p.F50F|CYTH4_uc011amw.1_5'UTR|CYTH4_uc010gxe.2_Intron	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	50	Potential.				regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						TCGACTGCTTCGAGAGTGCGG	0.592													35	73					0	0	1	0	0
CYTH4	27128	broad.mit.edu	37	22	37707063	37707063	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37707063C>T	uc003arf.2	+	10	959	c.843C>T	c.(841-843)TTC>TTT	p.F281F	CYTH4_uc011amw.1_Silent_p.F224F|CYTH4_uc010gxe.2_Intron	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	281	PH.				regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GGCGCTGGTTCATCCTGACCG	0.627													58	126					0	0	1	0	0
CYTH4	27128	broad.mit.edu	37	22	37707082	37707082	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37707082C>T	uc003arf.2	+	10	978	c.862C>T	c.(862-864)CTC>TTC	p.L288F	CYTH4_uc011amw.1_Missense_Mutation_p.L231F|CYTH4_uc010gxe.2_Intron	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	288	PH.				regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CGACAACTGCCTCTACTACTT	0.627													48	128					0	0	1	0	0
CYTH4	27128	broad.mit.edu	37	22	37709492	37709492	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37709492C>T	uc003arf.2	+	13	1241	c.1125C>T	c.(1123-1125)ACC>ACT	p.T375T	CYTH4_uc011amw.1_Silent_p.T318T|CYTH4_uc010gxe.2_RNA	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	375	PH.				regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CCAGCATCACCCGTGTCCCCT	0.577													24	76					0	0	1	0	0
CYTH4	27128	broad.mit.edu	37	22	37709508	37709508	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37709508G>A	uc003arf.2	+	13	1257	c.1141G>A	c.(1141-1143)GAC>AAC	p.D381N	CYTH4_uc011amw.1_Missense_Mutation_p.D324N|CYTH4_uc010gxe.2_RNA	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	381					regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CCCCTTCTACGACCTGGTCTC	0.587													13	91					0	0	1	0	0
ELFN2	114794	broad.mit.edu	37	22	37769835	37769836	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37769835_37769836GG>AA	uc003asq.3	-	3	2525_2526	c.1739_1740CC>TT	c.(1738-1740)TCC>TTT	p.S580F		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	580	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					CTGCAGGGAGGGACTGGCACTC	0.653													11	24					0	0	1	0	0
ELFN2	114794	broad.mit.edu	37	22	37770944	37770944	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37770944C>T	uc003asq.3	-	3	1417	c.631G>A	c.(631-633)GAC>AAC	p.D211N		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	211	LRRCT.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TGCAGGCGGTCGTAGTTCTTG	0.632													11	21					0	0	1	0	0
MFNG	4242	broad.mit.edu	37	22	37882141	37882141	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37882141C>T	uc003ass.1	-	1	245	c.75G>A	c.(73-75)CGG>CGA	p.R25R	MFNG_uc011ani.1_5'UTR|MFNG_uc011anj.1_Silent_p.R25R|CARD10_uc003ast.1_Intron	NM_002405	NP_002396	O00587	MFNG_HUMAN	O-fucosylpeptide	25	Helical; Signal-anchor for type II membrane protein; (Potential).				pattern specification process	extracellular space|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity			lung(1)	1	Melanoma(58;0.0574)					TCAAGTGGTACCGCAGACACA	0.667													18	44					0	0	1	0	0
CARD10	29775	broad.mit.edu	37	22	37891882	37891882	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37891882C>T	uc003asx.1	-	14	2191	c.2188G>A	c.(2188-2190)GAG>AAG	p.E730K	CARD10_uc003ast.1_RNA|CARD10_uc003asv.1_5'Flank|CARD10_uc011ank.1_Missense_Mutation_p.E48K|CARD10_uc003asw.1_Missense_Mutation_p.E444K|CARD10_uc003asy.1_Missense_Mutation_p.E730K	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	730					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					CGAAGGATCTCTTGGGCTTTC	0.622													18	53					0	0	1	0	0
CARD10	29775	broad.mit.edu	37	22	37892456	37892456	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37892456C>T	uc003asx.1	-	13	2062	c.2059G>A	c.(2059-2061)GCC>ACC	p.A687T	CARD10_uc003ast.1_RNA|CARD10_uc003asv.1_5'Flank|CARD10_uc011ank.1_Missense_Mutation_p.A5T|CARD10_uc003asw.1_Missense_Mutation_p.A401T|CARD10_uc003asy.1_Missense_Mutation_p.A687T	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	687					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					CCAGACTTACCCTTCGAGTCC	0.642													12	38					0	0	1	0	0
CARD10	29775	broad.mit.edu	37	22	37903940	37903940	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37903940G>A	uc003asx.1	-	6	1090	c.1087C>T	c.(1087-1089)CTG>TTG	p.L363L	CARD10_uc003ast.1_RNA|CARD10_uc003asw.1_Silent_p.L77L|CARD10_uc003asy.1_Silent_p.L363L	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	363	Potential.				activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					TTGAGCCGCAGGTCTTCCATC	0.627													23	88					0	0	1	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37962533	37962533	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37962533G>A	uc003asz.3	+	2	580	c.177G>A	c.(175-177)GGG>GGA	p.G59G		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	59					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					ATGTCTTCGGGGACACGTCCT	0.652													8	19					0	0	1	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37962694	37962694	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37962694C>T	uc003asz.3	+	2	741	c.338C>T	c.(337-339)TCC>TTC	p.S113F		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	113					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					CCGGCCATCTCCCCCATCATC	0.682													40	109					0	0	1	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37964342	37964343	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:37964342_37964343CC>TT	uc003asz.3	+	3	1094_1095	c.691_692CC>TT	c.(691-693)CCC>TTC	p.P231F		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	231	2.|8 X 7 AA tandem repeats of [PT]-[AT]-A- [ENT]-[PT]-[PTS]-[AG].				positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					CGCTGCAAACCCCCCAGCCCCT	0.668													12	33					0	0	1	0	0
SH3BP1	23616	broad.mit.edu	37	22	38040710	38040710	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38040710C>T	uc003ati.2	+	8	796	c.685C>T	c.(685-687)CGT>TGT	p.R229C	SH3BP1_uc003atg.1_RNA|SH3BP1_uc011anl.1_Missense_Mutation_p.R229C|SH3BP1_uc003ath.1_Missense_Mutation_p.R229C|SH3BP1_uc003atj.1_Missense_Mutation_p.R165C|SH3BP1_uc003atk.1_Missense_Mutation_p.R143C|uc003atl.1_Intron	NM_018957	NP_061830	Q9Y3L3	3BP1_HUMAN	SH3-domain binding protein 1	229	BAR.				signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CTACTTCATTCGTGTGAGTCC	0.582													49	214					0	0	1	0	0
SH3BP1	23616	broad.mit.edu	37	22	38051317	38051317	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38051317C>T	uc003ati.2	+	18	1843	c.1732C>T	c.(1732-1734)CCC>TCC	p.P578S	SH3BP1_uc003atg.1_RNA|SH3BP1_uc003ath.1_Intron|SH3BP1_uc003atj.1_Intron|SH3BP1_uc003atk.1_Intron|uc003atl.1_Intron	NM_018957	NP_061830	Q9Y3L3	3BP1_HUMAN	SH3-domain binding protein 1	578					signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CATGCCGCCCCCCCAGGTCTC	0.697													8	14					0	0	1	0	0
SH3BP1	23616	broad.mit.edu	37	22	38051357	38051357	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38051357C>T	uc003ati.2	+	18	1883	c.1772C>T	c.(1771-1773)CCC>CTC	p.P591L	SH3BP1_uc003atg.1_Intron|SH3BP1_uc003ath.1_Intron|SH3BP1_uc003atj.1_Intron|SH3BP1_uc003atk.1_Intron|uc003atl.1_Intron	NM_018957	NP_061830	Q9Y3L3	3BP1_HUMAN	SH3-domain binding protein 1	591					signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCAGCCCCGCCCTTGCCCCCT	0.741													6	8					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38106446	38106446	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38106446C>T	uc003atr.2	+	4	398	c.127C>T	c.(127-129)CCT>TCT	p.P43S	TRIOBP_uc003atu.2_5'UTR|TRIOBP_uc003atq.1_Missense_Mutation_p.P43S|TRIOBP_uc003ats.1_5'UTR	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	43					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GCTCAGGAGCCCTTCAGGTGC	0.687													14	26					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120288	38120288	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38120288C>T	uc003atr.2	+	7	1996	c.1725C>T	c.(1723-1725)CCC>CCT	p.P575P	TRIOBP_uc003atu.2_Silent_p.P403P|TRIOBP_uc003atq.1_Silent_p.P575P|TRIOBP_uc003ats.1_Silent_p.P403P	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	575					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAGACAACCCCAGAACATCCT	0.582													31	179					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120332	38120332	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38120332C>T	uc003atr.2	+	7	2040	c.1769C>T	c.(1768-1770)CCC>CTC	p.P590L	TRIOBP_uc003atu.2_Missense_Mutation_p.P418L|TRIOBP_uc003atq.1_Missense_Mutation_p.P590L|TRIOBP_uc003ats.1_Missense_Mutation_p.P418L	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	590					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GCCTCCTCTCCCAATAGAGCT	0.572													45	223					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120834	38120834	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38120834C>T	uc003atr.2	+	7	2542	c.2271C>T	c.(2269-2271)TCC>TCT	p.S757S	TRIOBP_uc003atu.2_Silent_p.S585S|TRIOBP_uc003atq.1_Silent_p.S757S|TRIOBP_uc003ats.1_Silent_p.S585S	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	757					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCAGAGCCTCCTCTCCTAACA	0.572													38	76					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121503	38121503	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38121503C>T	uc003atr.2	+	7	3211	c.2940C>T	c.(2938-2940)TCC>TCT	p.S980S	TRIOBP_uc003atu.2_Silent_p.S808S|TRIOBP_uc003atq.1_Silent_p.S980S|TRIOBP_uc003ats.1_Silent_p.S808S	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	980					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCTCTTCCTCCCATAACCCAG	0.642													82	232					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121863	38121863	+	Silent	SNP	C	T	T	rs140427804		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38121863C>T	uc003atr.2	+	7	3571	c.3300C>T	c.(3298-3300)TCC>TCT	p.S1100S	TRIOBP_uc003atu.2_Silent_p.S928S|TRIOBP_uc003atq.1_Silent_p.S1100S|TRIOBP_uc003ats.1_Silent_p.S928S	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1100					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding	p.S1100S(1)		central_nervous_system(1)	1	Melanoma(58;0.0574)					AGTGTCAGTCCCCCCAACACG	0.667													69	177					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121996	38121996	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38121996G>A	uc003atr.2	+	7	3704	c.3433G>A	c.(3433-3435)GAG>AAG	p.E1145K	TRIOBP_uc003atu.2_Missense_Mutation_p.E973K|TRIOBP_uc003atq.1_Missense_Mutation_p.E1145K|TRIOBP_uc003ats.1_Missense_Mutation_p.E973K	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1145					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GGCCAGCACAGAGAGCCTTGT	0.642													45	128					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38131207	38131207	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38131207C>T	uc003atr.2	+	9	5135	c.4864C>T	c.(4864-4866)CCT>TCT	p.P1622S	TRIOBP_uc003atu.2_Missense_Mutation_p.P1450S	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1622					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AAACGATGTCCCTGAGCAGGA	0.677											OREG0026548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	67					0	0	1	0	0
GCAT	23464	broad.mit.edu	37	22	38211196	38211196	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38211196C>T	uc003atz.2	+	5	660	c.640C>T	c.(640-642)CTG>TTG	p.L214L	GCAT_uc003aua.1_Silent_p.L240L	NM_014291	NP_055106	O75600	KBL_HUMAN	glycine C-acetyltransferase precursor	214					biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups				0	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CATCGCACCCCTGCAGGAGAT	0.602													4	42					0	0	1	0	0
ANKRD54	129138	broad.mit.edu	37	22	38234576	38234576	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38234576G>A	uc003auc.2	-	3	464	c.406C>T	c.(406-408)CCC>TCC	p.P136S	ANKRD54_uc003aud.2_Missense_Mutation_p.P13S	NM_138797	NP_620152	Q6NXT1	ANR54_HUMAN	ankyrin repeat domain 54	136	ANK 1.										0	Melanoma(58;0.045)					GCTGCACAGGGATCCGCGCCA	0.592													3	19					0	0	1	0	0
PLA2G6	8398	broad.mit.edu	37	22	38530995	38530995	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38530995C>T	uc003auy.1	-	6	1030	c.894G>A	c.(892-894)GAG>GAA	p.E298E	PLA2G6_uc003auz.1_Silent_p.E298E|PLA2G6_uc003ava.1_Silent_p.E298E|PLA2G6_uc003avb.2_Silent_p.E298E|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Silent_p.E263E	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	298	ANK 5.				cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	ATCCACTCACCTCTGCGTTCT	0.662													11	40					0	0	1	0	0
PLA2G6	8398	broad.mit.edu	37	22	38531036	38531037	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38531036_38531037GG>AA	uc003auy.1	-	6	988_989	c.852_853CC>TT	c.(850-855)CCCCGT>CCTTGT	p.R285C	PLA2G6_uc003auz.1_Missense_Mutation_p.R285C|PLA2G6_uc003ava.1_Missense_Mutation_p.R285C|PLA2G6_uc003avb.2_Missense_Mutation_p.R285C|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Missense_Mutation_p.R250C	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	285					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	GCTCCGTAACGGGGGTCTTTGC	0.658													20	59					0	0	1	0	0
CSNK1E	1454	broad.mit.edu	37	22	38690525	38690525	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38690525G>A	uc003avj.2	-	8	1162	c.901C>T	c.(901-903)CCC>TCC	p.P301S	CSNK1E_uc003avk.2_Missense_Mutation_p.P301S|CSNK1E_uc003avl.1_RNA|CSNK1E_uc003avm.1_Missense_Mutation_p.P301S|CSNK1E_uc003avn.1_5'UTR|CSNK1E_uc003avo.2_Missense_Mutation_p.P301S	NM_152221	NP_689407	P49674	KC1E_HUMAN	casein kinase 1 epsilon	301					DNA repair|G2/M transition of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|signal transduction	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Melanoma(58;0.045)					ACATCCTCGGGATTCCGGGCT	0.692													5	8					0	0	1	0	0
CSNK1E	1454	broad.mit.edu	37	22	38699191	38699191	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38699191G>A	uc003avj.2	-	3	400	c.139C>T	c.(139-141)CCC>TCC	p.P47S	CSNK1E_uc003avk.2_Missense_Mutation_p.P47S|CSNK1E_uc003avl.1_RNA|CSNK1E_uc003avm.1_Missense_Mutation_p.P47S|CSNK1E_uc003avo.2_Missense_Mutation_p.P47S|CSNK1E_uc003avp.1_Missense_Mutation_p.P47S|CSNK1E_uc003avq.1_Missense_Mutation_p.P47S|LOC400927_uc010gxm.2_RNA	NM_152221	NP_689407	P49674	KC1E_HUMAN	casein kinase 1 epsilon	47	Protein kinase.				DNA repair|G2/M transition of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|signal transduction	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Melanoma(58;0.045)					TGCAGCTGGGGGTGCTTTGTC	0.667													7	13					0	0	1	0	0
KCNJ4	3761	broad.mit.edu	37	22	38822908	38822908	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38822908C>T	uc003avs.1	-	2	1327	c.1230G>A	c.(1228-1230)GAG>GAA	p.E410E	KCNJ4_uc003avt.1_Silent_p.E410E	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	410	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					TGATGCCCGCCTCCTCCTTGG	0.677													46	116					0	0	1	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823648	38823648	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38823648C>T	uc003avs.1	-	2	587	c.490G>A	c.(490-492)GAC>AAC	p.D164N	KCNJ4_uc003avt.1_Missense_Mutation_p.D164N	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	164	Helical; Name=M2; (By similarity).	Role in the control of polyamine-mediated channel gating and in the blocking by intracellular magnesium (By similarity).			synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					ATGAAGGAGTCGATGACGCAG	0.627													6	75					0	0	1	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823763	38823763	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38823763G>A	uc003avs.1	-	2	472	c.375C>T	c.(373-375)TTC>TTT	p.F125F	KCNJ4_uc003avt.1_Silent_p.F125F	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	125					synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					CCGAGAACAGGAAGGCACCCA	0.582													30	99					0	0	1	0	0
DDX17	10521	broad.mit.edu	37	22	38884037	38884037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38884037G>A	uc003avy.3	-	12	1634	c.1531C>T	c.(1531-1533)CGT>TGT	p.R511C	DDX17_uc003avw.3_5'UTR|DDX17_uc010gxp.2_5'UTR|DDX17_uc003avx.3_Missense_Mutation_p.R511C	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	432	Helicase C-terminal.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					TTGGTGCTACGGGCTGTTCGG	0.483													48	129					0	0	1	0	0
DMC1	11144	broad.mit.edu	37	22	38962607	38962607	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:38962607C>T	uc003avz.1	-	4	406	c.231G>A	c.(229-231)GCG>GCA	p.A77A	DMC1_uc011anv.1_Silent_p.A77A|DMC1_uc003awa.1_Silent_p.A77A	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	77					reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					TTAGTTTGTTCGCTGCCTCTT	0.378								Homologous_recombination					17	51					0	0	1	0	0
GTPBP1	9567	broad.mit.edu	37	22	39125543	39125543	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39125543C>T	uc003awg.2	+	11	1947	c.1793C>T	c.(1792-1794)CCC>CTC	p.P598L		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	598					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					AAAAAGGGCCCCCTGACGAAA	0.607													7	22					0	0	1	0	0
NPTXR	23467	broad.mit.edu	37	22	39224351	39224351	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39224351C>T	uc003awk.2	-	2	945	c.791G>A	c.(790-792)AGG>AAG	p.R264K		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	264	Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					CACTTCCTGCCTCTGCCGGCG	0.652													22	42					0	0	1	0	0
NPTXR	23467	broad.mit.edu	37	22	39224440	39224440	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39224440C>T	uc003awk.2	-	2	856	c.702G>A	c.(700-702)AAG>AAA	p.K234K		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	234	Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					GCTGGTCCATCTTGGAGTGTA	0.657													8	19					0	0	1	0	0
APOBEC3B	9582	broad.mit.edu	37	22	39388084	39388084	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39388084C>T	uc003awo.1	+	7	1118	c.1064C>T	c.(1063-1065)CCC>CTC	p.P355L	APOBEC3A_uc011aoc.1_Intron|APOBEC3B_uc003awp.1_Missense_Mutation_p.P330L|APOBEC3B_uc003awq.1_RNA|APOBEC3D_uc011aod.1_Intron|APOBEC3D_uc011aoe.1_Intron|APOBEC3D_uc011aof.1_Intron	NM_004900	NP_004891	Q9UH17	ABC3B_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	355					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					CAGGGATGTCCCTTCCAGCCC	0.617													17	41					0	0	1	0	0
APOBEC3F	200316	broad.mit.edu	37	22	39448345	39448345	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39448345C>T	uc003aww.2	+	6	1283	c.990C>T	c.(988-990)ATC>ATT	p.I330I		NM_145298	NP_660341	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	337					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding				0	Melanoma(58;0.04)					CCGTGGAGATCATGGGCTACA	0.617													36	81					0	0	1	0	0
APOBEC3G	60489	broad.mit.edu	37	22	39477000	39477000	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39477000G>A	uc003awx.2	+	3	576	c.234G>A	c.(232-234)AGG>AGA	p.R78R	APOBEC3G_uc003awy.2_Silent_p.R11R	NM_021822	NP_068594	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	78					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2	Melanoma(58;0.04)					GCAAGTGGAGGAAGCTGCATC	0.433													23	40					0	0	1	0	0
PDGFB	5155	broad.mit.edu	37	22	39629528	39629528	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39629528C>T	uc003axf.2	-	3	1151	c.162G>A	c.(160-162)GAG>GAA	p.E54E	PDGFB_uc003axe.2_Silent_p.E39E	NM_002608	NP_002599	P01127	PDGFB_HUMAN	platelet-derived growth factor beta isoform 1	54					activation of protein kinase B activity|cellular response to mycophenolic acid|embryonic placenta development|heart development|hemopoiesis|metanephric glomerular mesangial cell development|monocyte chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|negative regulation of transcription, DNA-dependent|paracrine signaling|peptidyl-serine phosphorylation|peptidyl-tyrosine phosphorylation|platelet activation|platelet degranulation|positive regulation of blood vessel endothelial cell migration|positive regulation of calcium ion import|positive regulation of cell division|positive regulation of chemotaxis|positive regulation of cyclin-dependent protein kinase activity|positive regulation of DNA biosynthetic process|positive regulation of DNA replication|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of glomerular filtration|positive regulation of glomerular mesangial cell proliferation|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent|reactive oxygen species metabolic process|transforming growth factor beta receptor signaling pathway	basolateral plasma membrane|cell surface|endoplasmic reticulum lumen|extracellular region|Golgi membrane|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|superoxide-generating NADPH oxidase activator activity		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(1)	373	Melanoma(58;0.04)				Becaplermin(DB00102)	CCCCATCTTCCTCTGCAGGAG	0.652			T	COL1A1	DFSP								23	62					0	0	1	0	0
PDGFB	5155	broad.mit.edu	37	22	39631795	39631795	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39631795C>T	uc003axf.2	-	2	1137	c.148G>A	c.(148-150)GGA>AGA	p.G50R	PDGFB_uc003axe.2_Missense_Mutation_p.G35R	NM_002608	NP_002599	P01127	PDGFB_HUMAN	platelet-derived growth factor beta isoform 1	50					activation of protein kinase B activity|cellular response to mycophenolic acid|embryonic placenta development|heart development|hemopoiesis|metanephric glomerular mesangial cell development|monocyte chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|negative regulation of transcription, DNA-dependent|paracrine signaling|peptidyl-serine phosphorylation|peptidyl-tyrosine phosphorylation|platelet activation|platelet degranulation|positive regulation of blood vessel endothelial cell migration|positive regulation of calcium ion import|positive regulation of cell division|positive regulation of chemotaxis|positive regulation of cyclin-dependent protein kinase activity|positive regulation of DNA biosynthetic process|positive regulation of DNA replication|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of glomerular filtration|positive regulation of glomerular mesangial cell proliferation|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent|reactive oxygen species metabolic process|transforming growth factor beta receptor signaling pathway	basolateral plasma membrane|cell surface|endoplasmic reticulum lumen|extracellular region|Golgi membrane|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|superoxide-generating NADPH oxidase activator activity		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(1)	373	Melanoma(58;0.04)				Becaplermin(DB00102)	CCGGGGTCTCCGTGCAGCAGG	0.617			T	COL1A1	DFSP								8	23					0	0	1	0	0
TAB1	10454	broad.mit.edu	37	22	39824183	39824183	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39824183C>T	uc003axt.2	+	10	1351	c.1302C>T	c.(1300-1302)CTC>CTT	p.L434L	TAB1_uc003axr.2_Silent_p.L510L|TAB1_uc011aok.1_Silent_p.L268L|TAB1_uc003axu.1_Silent_p.L434L	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	434					activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						CCCCCACCCTCACCAAGTAAG	0.637													14	50					0	0	1	0	0
MGAT3	4248	broad.mit.edu	37	22	39883676	39883676	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39883676C>T	uc003axv.3	+	2	563	c.324C>T	c.(322-324)TTC>TTT	p.F108F	MGAT3_uc010gxy.2_Silent_p.F108F	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	108	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					CCGAGTATTTCGTGCGCACCA	0.706													7	21					0	0	1	0	0
MGAT3	4248	broad.mit.edu	37	22	39883959	39883959	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39883959G>A	uc003axv.3	+	2	846	c.607G>A	c.(607-609)GAG>AAG	p.E203K	MGAT3_uc010gxy.2_Missense_Mutation_p.E203K	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	203	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					GGTGCCCAGGGAGGTGCCGCG	0.677													7	18					0	0	1	0	0
MGAT3	4248	broad.mit.edu	37	22	39884112	39884112	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39884112C>T	uc003axv.3	+	2	999	c.760C>T	c.(760-762)CGG>TGG	p.R254W	MGAT3_uc010gxy.2_Missense_Mutation_p.R254W	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	254	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					GCTCAAGTTCCGGGAGATGCT	0.642													27	72					0	0	1	0	0
MGAT3	4248	broad.mit.edu	37	22	39884747	39884747	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39884747C>T	uc003axv.3	+	2	1634	c.1395C>T	c.(1393-1395)TTC>TTT	p.F465F	MGAT3_uc010gxy.2_Silent_p.F465F	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	465	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					GGGGCTGGTTCGACGGCACGC	0.637													7	25					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966858	39966859	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39966858_39966859CC>TT	uc003ayc.2	+	1	101_102	c.101_102CC>TT	c.(100-102)TCC>TTT	p.S34F	CACNA1I_uc003ayd.2_Missense_Mutation_p.S34F	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	34	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CCCCCATCCTCCCCGCCAGGCC	0.683													17	27					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966963	39966963	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:39966963G>A	uc003ayc.2	+	1	206	c.206G>A	c.(205-207)CGG>CAG	p.R69Q	CACNA1I_uc003ayd.2_Missense_Mutation_p.R69Q	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	69	Cytoplasmic (Potential).|I.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACCAGCCCCCGGAACTGGTGC	0.637													8	127					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40030593	40030593	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40030593C>T	uc003ayc.2	+	5	604	c.604C>T	c.(604-606)CTC>TTC	p.L202F	CACNA1I_uc003ayd.2_Missense_Mutation_p.L202F|CACNA1I_uc003aye.2_Missense_Mutation_p.L117F|CACNA1I_uc003ayf.2_Missense_Mutation_p.L117F	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	202	I.|Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GGTGAACCTGCTCCTGGACAC	0.567													61	209					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40037088	40037088	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40037088G>A	uc003ayc.2	+	6	957	c.957G>A	c.(955-957)TGG>TGA	p.W319*	CACNA1I_uc003ayd.2_Nonsense_Mutation_p.W319*|CACNA1I_uc003aye.2_Nonsense_Mutation_p.W234*|CACNA1I_uc003ayf.2_Nonsense_Mutation_p.W234*	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	319	I.|Extracellular (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GTGTCAACTGGAACCGTTACT	0.587													21	64					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40045876	40045876	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40045876C>T	uc003ayc.2	+	10	1938	c.1938C>T	c.(1936-1938)ATC>ATT	p.I646I	CACNA1I_uc003ayd.2_Silent_p.I611I|CACNA1I_uc003aye.2_Silent_p.I561I|CACNA1I_uc003ayf.2_Silent_p.I526I	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	646	Helical; Name=S1 of repeat II; (Potential).|II.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACCGGGGCATCATGATGGCCA	0.642													9	33					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40061891	40061891	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40061891C>T	uc003ayc.2	+	23	3984	c.3984C>T	c.(3982-3984)TTC>TTT	p.F1328F	CACNA1I_uc003ayd.2_Silent_p.F1293F|CACNA1I_uc003aye.2_Silent_p.F1243F|CACNA1I_uc003ayf.2_Silent_p.F1208F	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1328	Extracellular (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CCCAGCTCTTCAAGGGCAAGT	0.567													43	104					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40078519	40078519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40078519G>A	uc003ayc.2	+	35	5683	c.5683G>A	c.(5683-5685)GAG>AAG	p.E1895K	CACNA1I_uc003ayd.2_Missense_Mutation_p.E1860K|CACNA1I_uc003aye.2_Missense_Mutation_p.E1810K|CACNA1I_uc003ayf.2_Missense_Mutation_p.E1775K	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1895	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GGACCCACCTGAGCCCATGCG	0.607													47	96					0	0	1	0	0
ENTHD1	150350	broad.mit.edu	37	22	40139745	40139745	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40139745G>A	uc003ayg.2	-	7	2014	c.1763C>T	c.(1762-1764)TCA>TTA	p.S588L		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	588										ovary(2)|skin(1)	3	Melanoma(58;0.0749)					GCTTATTTGTGAACTATTCAG	0.413													26	67					0	0	1	0	0
ENTHD1	150350	broad.mit.edu	37	22	40283671	40283671	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40283671C>T	uc003ayg.2	-	2	333	c.82G>A	c.(82-84)GAC>AAC	p.D28N		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	28	ENTH.									ovary(2)|skin(1)	3	Melanoma(58;0.0749)					CCCCAAGGGTCGTTAGAAGTT	0.393													51	100					0	0	1	0	0
GRAP2	9402	broad.mit.edu	37	22	40351840	40351840	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40351840G>A	uc003ayh.1	+	3	359	c.96G>A	c.(94-96)GAG>GAA	p.E32E	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Intron|GRAP2_uc011aon.1_Intron|GRAP2_uc010gya.1_Silent_p.E32E|GRAP2_uc011aoo.1_Intron|GRAP2_uc011aop.1_Silent_p.E32E|GRAP2_uc011aoq.1_Intron|GRAP2_uc003ayj.1_Silent_p.E32E	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	32	SH3 1.				cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GTAACCAAGAGGAGTGGTTTA	0.458													6	60					0	0	1	0	0
TNRC6B	23112	broad.mit.edu	37	22	40669560	40669560	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40669560C>T	uc011aor.1	+	7	3308	c.3097C>T	c.(3097-3099)CAC>TAC	p.H1033Y	TNRC6B_uc003aym.2_Missense_Mutation_p.H286Y|TNRC6B_uc003ayn.3_Missense_Mutation_p.H980Y|TNRC6B_uc003ayo.2_Missense_Mutation_p.H837Y	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1033					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						TGCTTCCTCCCACAACTCAGC	0.552													4	4					0	0	1	0	0
TNRC6B	23112	broad.mit.edu	37	22	40719134	40719134	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40719134C>T	uc011aor.1	+	23	5602	c.5391C>T	c.(5389-5391)AAC>AAT	p.N1797N	TNRC6B_uc003aym.2_Silent_p.N993N|TNRC6B_uc003ayn.3_Silent_p.N1687N	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1797					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						GGCCCCCAAACTATTCTTCTA	0.607													9	23					0	0	1	0	0
ADSL	158	broad.mit.edu	37	22	40746003	40746004	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40746003_40746004CC>TT	uc003ayp.3	+	2	380_381	c.321_322CC>TT	c.(319-324)CACCTT>CATTTT	p.L108F	ADSL_uc003ays.3_Missense_Mutation_p.L108F|ADSL_uc003ayq.3_Missense_Mutation_p.L108F|ADSL_uc003ayr.3_5'UTR|ADSL_uc003ayt.3_Missense_Mutation_p.L108F	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	108					AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						GCATTATTCACCTTGGTGCTAC	0.421													21	88					0	0	1	0	0
ADSL	158	broad.mit.edu	37	22	40760984	40760984	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40760984C>T	uc003ayp.3	+	12	1351	c.1292C>T	c.(1291-1293)GCC>GTC	p.A431V	ADSL_uc003ays.3_Intron|ADSL_uc003ayq.3_Missense_Mutation_p.A445V|ADSL_uc003ayr.3_Missense_Mutation_p.A207V|ADSL_uc003ayt.3_Missense_Mutation_p.A416V	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	431					AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						CAGGTTGATGCCTACTTCAGT	0.488													10	186					0	0	1	0	0
ADSL	158	broad.mit.edu	37	22	40762483	40762483	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40762483C>T	uc003ayp.3	+	13	1471	c.1412C>T	c.(1411-1413)CCA>CTA	p.P471L	ADSL_uc003ays.3_Missense_Mutation_p.P412L|ADSL_uc003ayq.3_Missense_Mutation_p.P485L|ADSL_uc003ayr.3_Missense_Mutation_p.P247L|ADSL_uc003ayt.3_Missense_Mutation_p.P456L	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	471					AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						CTGTTAAAACCATATGAAAGC	0.358													22	49					0	0	1	0	0
MKL1	57591	broad.mit.edu	37	22	40814611	40814611	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40814611G>A	uc003ayv.1	-	9	2038	c.1831C>T	c.(1831-1833)CCT>TCT	p.P611S	MKL1_uc003ayw.1_Missense_Mutation_p.P611S|MKL1_uc010gye.1_Missense_Mutation_p.P611S|MKL1_uc010gyf.1_Missense_Mutation_p.P561S	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	611	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						ACAGCACAAGGGTCTATGTGG	0.701			T	RBM15	acute megakaryocytic leukemia								8	24					0	0	1	0	0
MKL1	57591	broad.mit.edu	37	22	40815211	40815211	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40815211G>A	uc003ayv.1	-	9	1438	c.1231C>T	c.(1231-1233)CCA>TCA	p.P411S	MKL1_uc003ayw.1_Missense_Mutation_p.P411S|MKL1_uc010gye.1_Missense_Mutation_p.P411S|MKL1_uc010gyf.1_Missense_Mutation_p.P361S	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	411					positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CGGGCCGCTGGGAAGGCTACC	0.677			T	RBM15	acute megakaryocytic leukemia								3	9					0	0	1	0	0
MKL1	57591	broad.mit.edu	37	22	40827457	40827457	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:40827457G>A	uc003ayv.1	-	3	298	c.91C>T	c.(91-93)CGT>TGT	p.R31C	MKL1_uc003ayw.1_Missense_Mutation_p.R31C|MKL1_uc010gye.1_Missense_Mutation_p.R31C|MKL1_uc010gyf.1_Missense_Mutation_p.R31C	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	31	RPEL 1.|Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GGCCGGGAACGAATCTTCCGT	0.473			T	RBM15	acute megakaryocytic leukemia								94	177					0	0	1	0	0
MCHR1	2847	broad.mit.edu	37	22	41075531	41075531	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41075531G>A	uc003ayz.2	+	1	350	c.82G>A	c.(82-84)GAC>AAC	p.D28N	MCHR1_uc003aza.2_Intron	NM_005297	NP_005288	Q99705	MCHR1_HUMAN	G protein-coupled receptor 24	28	Extracellular (Potential).		D -> V.		elevation of cytosolic calcium ion concentration|feeding behavior|generation of precursor metabolites and energy|inhibition of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane|nonmotile primary cilium	neuropeptide receptor activity				0						TACGGAGGAAGACCCCCTTCC	0.652													16	35					0	0	1	0	0
MCHR1	2847	broad.mit.edu	37	22	41077897	41077897	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41077897G>A	uc003ayz.2	+	2	1502	c.1234G>A	c.(1234-1236)GCT>ACT	p.A412T	MCHR1_uc003aza.2_Missense_Mutation_p.A301T|uc003azb.1_RNA	NM_005297	NP_005288	Q99705	MCHR1_HUMAN	G protein-coupled receptor 24	412	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|feeding behavior|generation of precursor metabolites and energy|inhibition of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane|nonmotile primary cilium	neuropeptide receptor activity				0						CGCTCAGACGGCTGACGAGGA	0.607													11	86					0	0	1	0	0
XPNPEP3	63929	broad.mit.edu	37	22	41265035	41265035	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41265035C>T	uc003azh.2	+	2	189	c.97C>T	c.(97-99)CTT>TTT	p.L33F	XPNPEP3_uc011aox.1_Missense_Mutation_p.L33F|XPNPEP3_uc003azi.2_5'UTR|XPNPEP3_uc011aoy.1_RNA|XPNPEP3_uc010gyh.1_RNA	NM_022098	NP_071381	Q9NQH7	XPP3_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 3,	33					cellular process	mitochondrion	aminopeptidase activity|manganese ion binding|metallopeptidase activity				0						AAGGTACTCCCTTCAGCCTGT	0.438													56	111					0	0	1	0	0
XPNPEP3	63929	broad.mit.edu	37	22	41277899	41277899	+	Missense_Mutation	SNP	C	T	T	rs73885709		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41277899C>T	uc003azh.2	+	3	399	c.307C>T	c.(307-309)CCT>TCT	p.P103S	XPNPEP3_uc011aox.1_Missense_Mutation_p.P103S|XPNPEP3_uc003azi.2_Missense_Mutation_p.P24S|XPNPEP3_uc011aoy.1_RNA|XPNPEP3_uc010gyh.1_RNA	NM_022098	NP_071381	Q9NQH7	XPP3_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 3,	103					cellular process	mitochondrion	aminopeptidase activity|manganese ion binding|metallopeptidase activity				0						GCTCTCCAACCCTACATACTA	0.463													45	96					0	0	1	0	0
EP300	2033	broad.mit.edu	37	22	41564759	41564759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41564759C>T	uc003azl.3	+	25	4455	c.4060C>T	c.(4060-4062)CCA>TCA	p.P1354S		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1354					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						AGAATCCTTTCCATACCGAAC	0.458			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				21	87					0	0	1	0	0
L3MBTL2	83746	broad.mit.edu	37	22	41621801	41621801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41621801C>T	uc003azo.2	+	12	1414	c.1360C>T	c.(1360-1362)CTC>TTC	p.L454F	L3MBTL2_uc010gyi.1_Missense_Mutation_p.L363F|L3MBTL2_uc003azn.2_RNA	NM_031488	NP_113676	Q969R5	LMBL2_HUMAN	l(3)mbt-like 2	454	MBT 3.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	methylated histone residue binding|transcription corepressor activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3						CCCCCAGGTTCTCCTGGATGG	0.592													16	44					0	0	1	0	0
L3MBTL2	83746	broad.mit.edu	37	22	41621803	41621803	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41621803C>T	uc003azo.2	+	12	1416	c.1362C>T	c.(1360-1362)CTC>CTT	p.L454L	L3MBTL2_uc010gyi.1_Silent_p.L363L|L3MBTL2_uc003azn.2_RNA	NM_031488	NP_113676	Q969R5	LMBL2_HUMAN	l(3)mbt-like 2	454	MBT 3.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	methylated histone residue binding|transcription corepressor activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3						CCCAGGTTCTCCTGGATGGAT	0.597													17	44					0	0	1	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41735093	41735093	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41735093C>T	uc003azw.2	+	9	930	c.714C>T	c.(712-714)GCC>GCT	p.A238A	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	254					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						ACCTGCTGGCCCCCCTGGACA	0.667													46	126					0	0	1	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41735888	41735888	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41735888C>T	uc003azw.2	+	10	1101	c.885C>T	c.(883-885)TTC>TTT	p.F295F	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	311					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						TACCCGTGTTCCCCGGCGGGA	0.667													29	101					0	0	1	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41735935	41735935	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41735935C>T	uc003azw.2	+	10	1148	c.932C>T	c.(931-933)CCT>CTT	p.P311L	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	327					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						GGCTCCATCCCTGTCTCCAGC	0.692													37	57					0	0	1	0	0
TOB2	10766	broad.mit.edu	37	22	41833288	41833288	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:41833288G>A	uc003azz.1	-	2	769	c.62C>T	c.(61-63)CCC>CTC	p.P21L		NM_016272	NP_057356	Q14106	TOB2_HUMAN	transducer of ERBB2, 2	21					female gamete generation|negative regulation of cell proliferation	cytoplasm|nucleus				ovary(1)	1						CCGGCGCCGGGGCAGCTTGTT	0.537													34	53					0	0	1	0	0
MEI1	150365	broad.mit.edu	37	22	42128555	42128555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42128555C>T	uc003baz.1	+	11	1304	c.1279C>T	c.(1279-1281)CCT>TCT	p.P427S	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc003bay.3_Missense_Mutation_p.P427S|MEI1_uc011apd.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	427							binding			central_nervous_system(1)|skin(1)	2						AGTTAGCAGCCCTGTGCTGGA	0.547													27	37					0	0	1	0	0
MEI1	150365	broad.mit.edu	37	22	42128605	42128605	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42128605G>A	uc003baz.1	+	11	1354	c.1329G>A	c.(1327-1329)CTG>CTA	p.L443L	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc003bay.3_Silent_p.L443L|MEI1_uc011apd.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	443							binding			central_nervous_system(1)|skin(1)	2						CTGCTTTTCTGAGGTGAGAGA	0.498													16	46					0	0	1	0	0
MEI1	150365	broad.mit.edu	37	22	42149979	42149979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42149979C>T	uc003baz.1	+	17	1905	c.1880C>T	c.(1879-1881)TCC>TTC	p.S627F	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_5'UTR|MEI1_uc003bbc.1_5'UTR|MEI1_uc010gym.1_5'UTR	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	627							binding			central_nervous_system(1)|skin(1)	2						CAGGTGTGTTCCAATTTCCTC	0.448													41	61					0	0	1	0	0
CCDC134	79879	broad.mit.edu	37	22	42204930	42204930	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42204930C>T	uc003bbh.1	+	2	145	c.36C>T	c.(34-36)GTC>GTT	p.V12V	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|CCDC134_uc011apg.1_Silent_p.V12V	NM_024821	NP_079097	Q9H6E4	CC134_HUMAN	coiled-coil domain containing 134 precursor	12						extracellular region				ovary(2)	2						TCCTCTTTGTCCTGCTTTTGT	0.493													19	92					0	0	1	0	0
CCDC134	79879	broad.mit.edu	37	22	42209433	42209433	+	Missense_Mutation	SNP	C	T	T	rs148694139		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42209433C>T	uc003bbh.1	+	5	585	c.476C>T	c.(475-477)TCG>TTG	p.S159L	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|CCDC134_uc011apg.1_Intron	NM_024821	NP_079097	Q9H6E4	CC134_HUMAN	coiled-coil domain containing 134 precursor	159						extracellular region				ovary(2)	2						GGGCCCCACTCGCCCATCCTC	0.587													18	43					0	0	1	0	0
SREBF2	6721	broad.mit.edu	37	22	42263150	42263150	+	Missense_Mutation	SNP	C	T	T	rs150623766		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42263150C>T	uc003bbi.2	+	2	573	c.404C>T	c.(403-405)CCC>CTC	p.P135L	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	135	Cytoplasmic (Potential).|Gln-rich.				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						cagccccgcccccagccccag	0.443													38	71					0	0	1	0	0
SREBF2	6721	broad.mit.edu	37	22	42289183	42289183	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42289183C>T	uc003bbi.2	+	12	2440	c.2271C>T	c.(2269-2271)TCC>TCT	p.S757S	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|SREBF2_uc003bbj.2_RNA	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	757	Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						TTCCTGACTCCCTGCGCTGGC	0.602													27	100					0	0	1	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42538870	42538870	+	Missense_Mutation	SNP	A	C	C	rs2982057	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42538870A>C	uc003bci.2	-	3	475	c.94T>G	c.(94-96)TCG>GCG	p.S32A	CYP2D7P1_uc003bcg.2_5'Flank|CYP2D7P1_uc003bch.2_5'Flank|CYP2D7P1_uc010gyv.2_Intron|CYP2D7P1_uc010gyw.2_RNA|CYP2D7P1_uc010gyx.1_Missense_Mutation_p.S32A	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						CCATAGCGCGACAGGAACACC	0.687													4	37					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42607138	42607138	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42607138G>A	uc003bcj.1	-	1	4308	c.4174C>T	c.(4174-4176)CCT>TCT	p.P1392S	TCF20_uc003bck.1_Missense_Mutation_p.P1392S|TCF20_uc003bnt.2_Missense_Mutation_p.P1392S	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1392					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CCTTCAGGAGGACCACTCTTC	0.507													19	110					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42607562	42607562	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42607562G>A	uc003bcj.1	-	1	3884	c.3750C>T	c.(3748-3750)CCC>CCT	p.P1250P	TCF20_uc003bck.1_Silent_p.P1250P|TCF20_uc003bnt.2_Silent_p.P1250P	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1250					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						TCATGATTAAGGGGTTTTGAG	0.463													6	96					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42608869	42608869	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42608869G>A	uc003bcj.1	-	1	2577	c.2443C>T	c.(2443-2445)CCC>TCC	p.P815S	TCF20_uc003bck.1_Missense_Mutation_p.P815S|TCF20_uc003bnt.2_Missense_Mutation_p.P815S	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	815					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CCCCAGTGGGGATTTTCTAAT	0.443													30	70					0	0	1	0	0
NFAM1	150372	broad.mit.edu	37	22	42807450	42807450	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42807450G>A	uc003bcn.3	-	2	452	c.414C>T	c.(412-414)TCC>TCT	p.S138S		NM_145912	NP_666017	Q8NET5	NFAM1_HUMAN	NFAT activation molecule 1 precursor	138	Extracellular (Potential).|Ig-like V-type.				B cell differentiation|inflammatory response|intracellular signal transduction|positive regulation of B cell receptor signaling pathway|positive regulation of cytokine production|positive regulation of sequence-specific DNA binding transcription factor activity	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity				0						CTCTCACCGTGGAGTGTGGCC	0.597													17	20					0	0	1	0	0
NFAM1	150372	broad.mit.edu	37	22	42807591	42807591	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42807591C>T	uc003bcn.3	-	2	311	c.273G>A	c.(271-273)AGG>AGA	p.R91R		NM_145912	NP_666017	Q8NET5	NFAM1_HUMAN	NFAT activation molecule 1 precursor	91	Extracellular (Potential).|Ig-like V-type.				B cell differentiation|inflammatory response|intracellular signal transduction|positive regulation of B cell receptor signaling pathway|positive regulation of cytokine production|positive regulation of sequence-specific DNA binding transcription factor activity	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity				0						TCTTAGGGCTCCTCTGTCCCT	0.547													34	86					0	0	1	0	0
NFAM1	150372	broad.mit.edu	37	22	42807656	42807656	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42807656G>A	uc003bcn.3	-	2	246	c.208C>T	c.(208-210)CCA>TCA	p.P70S		NM_145912	NP_666017	Q8NET5	NFAM1_HUMAN	NFAT activation molecule 1 precursor	70	Extracellular (Potential).|Ig-like V-type.				B cell differentiation|inflammatory response|intracellular signal transduction|positive regulation of B cell receptor signaling pathway|positive regulation of cytokine production|positive regulation of sequence-specific DNA binding transcription factor activity	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity				0						GGAGTGTATGGATAGGTGATC	0.547													38	65					0	0	1	0	0
POLDIP3	84271	broad.mit.edu	37	22	42981873	42981873	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:42981873G>A	uc003bcu.2	-	9	1289	c.1190C>T	c.(1189-1191)ACC>ATC	p.T397I	POLDIP3_uc011app.1_3'UTR|POLDIP3_uc003bcv.2_Missense_Mutation_p.T368I|POLDIP3_uc011apq.1_Missense_Mutation_p.T414I|POLDIP3_uc010gza.2_RNA|POLDIP3_uc011apr.1_RNA|POLDIP3_uc010gzb.1_Intron	NM_032311	NP_115687	Q9BY77	PDIP3_HUMAN	DNA polymerase delta interacting protein 3	397					positive regulation of translation	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding				0						CTTCAGGATGGTGTCAGGGTC	0.582													44	91					0	0	1	0	0
A4GALT	53947	broad.mit.edu	37	22	43089247	43089247	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43089247G>A	uc003bdb.2	-	3	972	c.711C>T	c.(709-711)TTC>TTT	p.F237F	A4GALT_uc010gzd.2_Silent_p.F237F	NM_017436	NP_059132	Q9NPC4	A4GAT_HUMAN	alpha 1,4-galactosyltransferase	237	Lumenal (Potential).				glycosphingolipid biosynthetic process|plasma membrane organization	Golgi stack|integral to Golgi membrane|membrane fraction	lactosylceramide 4-alpha-galactosyltransferase activity			central_nervous_system(2)	2						AGTGGTCCACGAAGTCCCGCA	0.657													7	23					0	0	1	0	0
A4GALT	53947	broad.mit.edu	37	22	43089886	43089886	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43089886G>A	uc003bdb.2	-	3	333	c.72C>T	c.(70-72)TTC>TTT	p.F24F	A4GALT_uc010gzd.2_Silent_p.F24F	NM_017436	NP_059132	Q9NPC4	A4GAT_HUMAN	alpha 1,4-galactosyltransferase	24	Helical; Signal-anchor for type II membrane protein; (Potential).				glycosphingolipid biosynthetic process|plasma membrane organization	Golgi stack|integral to Golgi membrane|membrane fraction	lactosylceramide 4-alpha-galactosyltransferase activity			central_nervous_system(2)	2						AGCCGATGATGAACAGGGTGC	0.597													10	18					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43606197	43606198	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43606197_43606198GG>AA	uc003bdt.1	-	19	2520_2521	c.2432_2433CC>TT	c.(2431-2433)TCC>TTT	p.S811F		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	811	CUB.				adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GGTAGTTGGGGGACTCGATGTA	0.653													15	34					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43610138	43610138	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43610138C>T	uc003bdt.1	-	16	2099	c.2011G>A	c.(2011-2013)GGG>AGG	p.G671R		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	671					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				AGACCAAGCCCGTCGCTGCTG	0.647													14	30					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43614358	43614358	+	Silent	SNP	G	A	A	rs142184960		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43614358G>A	uc003bdt.1	-	15	1882	c.1794C>T	c.(1792-1794)GTC>GTT	p.V598V		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	598					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				CAGTGCCTGAGACCTGGACAT	0.647													75	102					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43634857	43634857	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43634857C>T	uc003bdt.1	-	7	919	c.831G>A	c.(829-831)GGG>GGA	p.G277G	SCUBE1_uc003bdu.1_Silent_p.G307G	NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	277	EGF-like 5 (Potential).				adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				TGCATGTCTTCCCGTCCGGCT	0.637													8	48					0	0	1	0	0
MPPED1	758	broad.mit.edu	37	22	43821046	43821046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43821046C>T	uc011apv.1	+	2	278	c.55C>T	c.(55-57)CTC>TTC	p.L19F	MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Missense_Mutation_p.L19F|MPPED1_uc011apz.1_Missense_Mutation_p.L52F	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	19							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				CCTGGCCCTCCTCCCCTGCGG	0.711													5	27					0	0	1	0	0
MPPED1	758	broad.mit.edu	37	22	43821061	43821061	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43821061G>A	uc011apv.1	+	2	293	c.70G>A	c.(70-72)GGC>AGC	p.G24S	MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Missense_Mutation_p.G24S|MPPED1_uc011apz.1_Missense_Mutation_p.G57S	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	24							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				CTGCGGCCTGGGCATGGCATT	0.701													18	19					0	0	1	0	0
MPPED1	758	broad.mit.edu	37	22	43821097	43821097	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43821097C>T	uc011apv.1	+	2	329	c.106C>T	c.(106-108)CGG>TGG	p.R36W	MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Missense_Mutation_p.R36W|MPPED1_uc011apz.1_Missense_Mutation_p.R69W	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	36							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				GATGGCCGCTCGGCGGCACCA	0.662													23	36					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43936011	43936011	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43936011G>A	uc003bdy.1	-	28	4090	c.3875C>T	c.(3874-3876)CCC>CTC	p.P1292L	EFCAB6_uc003bdz.1_Missense_Mutation_p.P1140L|EFCAB6_uc010gzi.1_Missense_Mutation_p.P1140L	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1292					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				ACTCACACAGGGGTGGCTCTG	0.612													12	57					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43936053	43936053	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43936053G>A	uc003bdy.1	-	28	4048	c.3833C>T	c.(3832-3834)CCC>CTC	p.P1278L	EFCAB6_uc003bdz.1_Missense_Mutation_p.P1126L|EFCAB6_uc010gzi.1_Missense_Mutation_p.P1126L	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1278					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTCCTGAGTGGGCAATGAGAG	0.612													6	72					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43972278	43972278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43972278C>T	uc003bdy.1	-	26	3534	c.3319G>A	c.(3319-3321)GAC>AAC	p.D1107N	EFCAB6_uc003bdz.1_Missense_Mutation_p.D955N|EFCAB6_uc010gzi.1_Missense_Mutation_p.D955N|EFCAB6_uc010gzj.1_Missense_Mutation_p.D333N	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1107					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TACTGATTGTCCGTTAGTTTG	0.333													28	70					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43976494	43976494	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43976494G>A	uc003bdy.1	-	25	3293	c.3078C>T	c.(3076-3078)TTC>TTT	p.F1026F	EFCAB6_uc003bdz.1_Silent_p.F874F|EFCAB6_uc010gzi.1_Silent_p.F874F|EFCAB6_uc010gzj.1_Silent_p.F252F	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1026					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTGCTCTCAGGAAGTCGAGGT	0.458													107	267					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43986097	43986097	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:43986097C>T	uc003bdy.1	-	24	3104	c.2889G>A	c.(2887-2889)ATG>ATA	p.M963I	EFCAB6_uc003bdz.1_Missense_Mutation_p.M811I|EFCAB6_uc010gzi.1_Missense_Mutation_p.M811I|EFCAB6_uc010gzj.1_Missense_Mutation_p.M189I	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	963					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				GATGGCGGTCCATAAGCTTAT	0.383													32	82					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44004474	44004474	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:44004474G>A	uc003bdy.1	-	22	2784	c.2569C>T	c.(2569-2571)CTA>TTA	p.L857L	EFCAB6_uc003bdz.1_Silent_p.L705L|EFCAB6_uc010gzi.1_Silent_p.L705L|EFCAB6_uc010gzj.1_Intron	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	857	EF-hand 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TCGGTTTCTAGAAAATTCTAC	0.398													36	57					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44064780	44064780	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:44064780C>T	uc003bdy.1	-	16	2001	c.1786G>A	c.(1786-1788)GAA>AAA	p.E596K	EFCAB6_uc003bdz.1_Missense_Mutation_p.E444K|EFCAB6_uc010gzi.1_Missense_Mutation_p.E444K|EFCAB6_uc010gzj.1_5'Flank|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	596					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TGCTGCTGTTCATCTTTTTGT	0.323													13	134					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44131741	44131741	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:44131741C>T	uc003bdy.1	-	7	855	c.640G>A	c.(640-642)GAA>AAA	p.E214K	EFCAB6_uc003bdz.1_Missense_Mutation_p.E62K|EFCAB6_uc010gzi.1_Missense_Mutation_p.E62K|EFCAB6_uc011aqa.1_Missense_Mutation_p.E108K|EFCAB6_uc003bea.1_Missense_Mutation_p.E211K|EFCAB6_uc003beb.3_Missense_Mutation_p.E108K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	214					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				GCTTACTTTTCGTATTCCTCG	0.443													41	107					0	0	1	0	0
SULT4A1	25830	broad.mit.edu	37	22	44234833	44234833	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:44234833G>A	uc003bee.1	-	4	538	c.422C>T	c.(421-423)TCT>TTT	p.S141F	SULT4A1_uc003bed.1_Missense_Mutation_p.S62F|SULT4A1_uc003bef.1_RNA|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166	Q9BR01	ST4A1_HUMAN	sulfotransferase family 4A, member 1	141					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	sulfotransferase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)		Colorectal(1;0.00242)|READ - Rectum adenocarcinoma(1;0.0419)		CTGATAATAAGACACCACCAG	0.552													21	59					0	0	1	0	0
SULT4A1	25830	broad.mit.edu	37	22	44234858	44234858	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:44234858G>A	uc003bee.1	-	4	513	c.397C>T	c.(397-399)CGC>TGC	p.R133C	SULT4A1_uc003bed.1_Missense_Mutation_p.R54C|SULT4A1_uc003bef.1_RNA|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166	Q9BR01	ST4A1_HUMAN	sulfotransferase family 4A, member 1	133					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	sulfotransferase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)		Colorectal(1;0.00242)|READ - Rectum adenocarcinoma(1;0.0419)		TTGGGGTTGCGAGCCATATAG	0.572													21	57					0	0	1	0	0
PNPLA5	150379	broad.mit.edu	37	22	44277460	44277460	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:44277460C>T	uc003beg.2	-	8	1274	c.1177G>A	c.(1177-1179)GCC>ACC	p.A393T	PNPLA5_uc011aqc.1_Missense_Mutation_p.A253T|PNPLA5_uc003beh.2_Missense_Mutation_p.A279T	NM_138814	NP_620169	Q7Z6Z6	PLPL5_HUMAN	patatin-like phospholipase domain containing 5	393					lipid catabolic process		hydrolase activity				0		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				AGGAGCTGGGCCTTGGTCCTG	0.662													3	8					0	0	1	0	0
PNPLA5	150379	broad.mit.edu	37	22	44280179	44280179	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:44280179G>A	uc003beg.2	-	7	1093	c.996C>T	c.(994-996)TTC>TTT	p.F332F	PNPLA5_uc011aqc.1_Silent_p.F192F|PNPLA5_uc003beh.2_Silent_p.F218F	NM_138814	NP_620169	Q7Z6Z6	PLPL5_HUMAN	patatin-like phospholipase domain containing 5	332					lipid catabolic process		hydrolase activity				0		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				CCGAGTGCCAGAAGCGGGCCC	0.617											OREG0026622	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	113					0	0	1	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45128160	45128160	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45128160C>T	uc003bfd.2	+	6	716	c.444C>T	c.(442-444)GCC>GCT	p.A148A	PRR5_uc003bew.1_Silent_p.A139A|PRR5_uc003bex.1_Silent_p.A53A|PRR5_uc010gzt.1_Silent_p.A171A|PRR5_uc010gzu.1_Silent_p.A112A|PRR5_uc003bey.1_Silent_p.A139A|PRR5_uc003bez.1_Silent_p.A53A|PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|PRR5_uc003bfa.1_Silent_p.A41A|PRR5_uc003bfb.1_Silent_p.A148A|PRR5_uc003bfe.1_RNA|PRR5-ARHGAP8_uc003bfg.1_Intron|PRR5_uc003bfh.1_Silent_p.A47A	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						GCCAGCTGGCCCTGCTGCACT	0.672													13	43					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45279062	45279062	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45279062C>T	uc003bfn.2	-	13	1651	c.1500G>A	c.(1498-1500)ACG>ACA	p.T500T	PHF21B_uc003bfm.2_Silent_p.T296T|PHF21B_uc011aqk.1_Silent_p.T446T|PHF21B_uc011aql.1_Silent_p.T458T	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	500							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		GGCTAGTGGTCGTCATGGTGA	0.701													27	94					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45309885	45309885	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45309885G>A	uc003bfn.2	-	5	799	c.648C>T	c.(646-648)CCC>CCT	p.P216P	PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron|PHF21B_uc011aqm.1_Intron	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	216							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		gtgatggggagggaggggtga	0.214													20	40					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45312480	45312480	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45312480G>A	uc003bfn.2	-	4	395	c.244C>T	c.(244-246)CTC>TTC	p.L82F	PHF21B_uc003bfm.2_5'UTR|PHF21B_uc011aqk.1_Missense_Mutation_p.L70F|PHF21B_uc011aql.1_Missense_Mutation_p.L82F|PHF21B_uc011aqm.1_Missense_Mutation_p.L70F	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	82							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		GCAACGGGGAGGCTGTCTGGA	0.657													32	53					0	0	1	0	0
UPK3A	7380	broad.mit.edu	37	22	45683229	45683229	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45683229C>T	uc003bfy.2	+	3	391	c.385C>T	c.(385-387)CTG>TTG	p.L129L	UPK3A_uc010gzy.2_Intron	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	129	Lumenal (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		CTCACAGATCCTGAATGCCTA	0.612													9	25					0	0	1	0	0
UPK3A	7380	broad.mit.edu	37	22	45689189	45689189	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45689189C>T	uc003bfy.2	+	5	705	c.699C>T	c.(697-699)AGC>AGT	p.S233S	UPK3A_uc010gzy.2_Silent_p.S112S	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	233	Helical; (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TTGCCCTCAGCCTCGTGTAAG	0.632													25	74					0	0	1	0	0
FAM118A	55007	broad.mit.edu	37	22	45719239	45719239	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45719239C>T	uc003bfz.3	+	4	847	c.231C>T	c.(229-231)TTC>TTT	p.F77F	FAM118A_uc003bga.3_Silent_p.F77F	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	77						integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TCGCCGAGTTCCGGAGGAAAG	0.592													11	89					0	0	1	0	0
FAM118A	55007	broad.mit.edu	37	22	45723824	45723824	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45723824C>T	uc003bfz.3	+	5	1018	c.402C>T	c.(400-402)ATC>ATT	p.I134I	FAM118A_uc003bga.3_Silent_p.I134I|uc011aqp.1_5'Flank|uc011aqq.1_5'Flank|FAM118A_uc011aqr.1_5'Flank	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	134						integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TGCAGTCGATCCTCAGCCTGA	0.617													11	41					0	0	1	0	0
SMC1B	27127	broad.mit.edu	37	22	45782899	45782899	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45782899C>T	uc003bgc.2	-	11	1811	c.1759G>A	c.(1759-1761)GAG>AAG	p.E587K	SMC1B_uc003bgd.2_Missense_Mutation_p.E587K|SMC1B_uc003bge.1_Missense_Mutation_p.E370K	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	587	Flexible hinge.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		CCTTTAAGCTCCCTTAGTCTT	0.328													26	100					0	0	1	0	0
SMC1B	27127	broad.mit.edu	37	22	45795022	45795022	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45795022C>T	uc003bgc.2	-	6	1118	c.1066G>A	c.(1066-1068)GAA>AAA	p.E356K	SMC1B_uc003bgd.2_Missense_Mutation_p.E356K|SMC1B_uc003bge.1_Missense_Mutation_p.E139K	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	356	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		AAAATTTCTTCCTCAATCTGC	0.378													23	192					0	0	1	0	0
SMC1B	27127	broad.mit.edu	37	22	45798380	45798380	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45798380G>A	uc003bgc.2	-	5	739	c.687C>T	c.(685-687)TAC>TAT	p.Y229Y	SMC1B_uc003bgd.2_Silent_p.Y229Y|SMC1B_uc003bge.1_Silent_p.Y12Y	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	229	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TCTCATTATGGTATAGTTGAA	0.358													49	111					0	0	1	0	0
RIBC2	26150	broad.mit.edu	37	22	45813553	45813553	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45813553C>T	uc011aqs.1	+	4	477	c.268C>T	c.(268-270)CTC>TTC	p.L90F		NM_015653	NP_056468	Q9H4K1	RIBC2_HUMAN	RIB43A domain with coiled-coils 2	22											0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TAGGAAAAATCTCTGTAGGGC	0.433													18	60					0	0	1	0	0
FBLN1	2192	broad.mit.edu	37	22	45914634	45914634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45914634C>T	uc003bgj.1	+	2	299	c.152C>T	c.(151-153)TCG>TTG	p.S51L	FBLN1_uc003bgg.1_Missense_Mutation_p.S51L|FBLN1_uc003bgh.2_Missense_Mutation_p.S51L|FBLN1_uc010gzz.2_Missense_Mutation_p.S51L|FBLN1_uc003bgi.1_Missense_Mutation_p.S51L	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	51	Anaphylatoxin-like 1.				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		AAGGACTGCTCGCTGCCATAT	0.552													5	10					0	0	1	0	0
FBLN1	2192	broad.mit.edu	37	22	45923763	45923763	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45923763C>T	uc003bgj.1	+	4	505	c.358C>T	c.(358-360)CAG>TAG	p.Q120*	FBLN1_uc003bgg.1_Nonsense_Mutation_p.Q120*|FBLN1_uc003bgh.2_Nonsense_Mutation_p.Q120*|FBLN1_uc010gzz.2_Nonsense_Mutation_p.Q158*|FBLN1_uc003bgi.1_Nonsense_Mutation_p.Q120*	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	120	Anaphylatoxin-like 3.				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		GAGGGCGGCCCAGGCCCAGGG	0.627													20	116					0	0	1	0	0
FBLN1	2192	broad.mit.edu	37	22	45923856	45923856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45923856G>A	uc003bgj.1	+	4	598	c.451G>A	c.(451-453)GGA>AGA	p.G151R	FBLN1_uc003bgg.1_Missense_Mutation_p.G151R|FBLN1_uc003bgh.2_Missense_Mutation_p.G151R|FBLN1_uc010gzz.2_Missense_Mutation_p.G189R|FBLN1_uc003bgi.1_Missense_Mutation_p.G151R	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	151					interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		CCAGGAGACCGGAGATTTGGA	0.498													22	87					0	0	1	0	0
FBLN1	2192	broad.mit.edu	37	22	45946460	45946460	+	Silent	SNP	C	T	T	rs138534271	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:45946460C>T	uc003bgj.1	+	14	1809	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	FBLN1_uc003bgg.1_Silent_p.F554F|FBLN1_uc003bgh.2_Silent_p.F554F|FBLN1_uc010gzz.2_Silent_p.F592F|FBLN1_uc003bgi.1_Silent_p.F554F	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	554	EGF-like 9; calcium-binding.				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		GCCTGGCCTTCGAGTGCCCTG	0.592													12	80					0	0	1	0	0
ATXN10	25814	broad.mit.edu	37	22	46096167	46096167	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46096167C>T	uc003bgm.1	+	4	654	c.397C>T	c.(397-399)CGC>TGC	p.R133C	ATXN10_uc011aqt.1_Missense_Mutation_p.R69C|ATXN10_uc003bgn.1_5'UTR	NM_013236	NP_037368	Q9UBB4	ATX10_HUMAN	ataxin 10	133					cell death|neuron projection development	dendrite|neuronal cell body|perinuclear region of cytoplasm				ovary(1)|kidney(1)	2		Ovarian(80;0.00973)|all_neural(38;0.0417)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0223)		CTTAGCTTTTCGCTGTGGCCT	0.299													15	32					0	0	1	0	0
ATXN10	25814	broad.mit.edu	37	22	46202900	46202900	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46202900C>T	uc003bgm.1	+	10	1492	c.1235C>T	c.(1234-1236)CCC>CTC	p.P412L	ATXN10_uc011aqt.1_Missense_Mutation_p.P348L|ATXN10_uc003bgn.1_Missense_Mutation_p.P223L	NM_013236	NP_037368	Q9UBB4	ATX10_HUMAN	ataxin 10	412					cell death|neuron projection development	dendrite|neuronal cell body|perinuclear region of cytoplasm				ovary(1)|kidney(1)	2		Ovarian(80;0.00973)|all_neural(38;0.0417)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0223)		GACAGTAACCCCTGTATCCTT	0.453													31	86					0	0	1	0	0
WNT7B	7477	broad.mit.edu	37	22	46318801	46318801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46318801G>A	uc003bgo.2	-	4	1359	c.985C>T	c.(985-987)CAC>TAC	p.H329Y	WNT7B_uc010haa.2_Missense_Mutation_p.H333Y	NM_058238	NP_478679	P56706	WNT7B_HUMAN	wingless-type MMTV integration site family,	329					activation of JUN kinase activity|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|central nervous system vasculogenesis|chorio-allantoic fusion|developmental growth involved in morphogenesis|embryonic placenta morphogenesis|establishment or maintenance of polarity of embryonic epithelium|fibroblast proliferation|forebrain regionalization|inner medullary collecting duct development|lens fiber cell development|lobar bronchus development|lung epithelium development|lung morphogenesis|lung-associated mesenchyme development|mammary gland epithelium development|metanephric collecting duct development|metanephric loop of Henle development|metanephros morphogenesis|negative regulation of smoothened signaling pathway|outer medullary collecting duct development|oxygen homeostasis|positive regulation of JNK cascade|positive regulation of osteoblast differentiation|renal inner medulla development|renal outer medulla development|stem cell proliferation|synapse organization|trachea cartilage morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled binding|signal transducer activity			lung(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|LUAD - Lung adenocarcinoma(64;0.247)		CAGCACCAGTGGAATTTGCAG	0.657													27	73					0	0	1	0	0
WNT7B	7477	broad.mit.edu	37	22	46318965	46318965	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46318965G>A	uc003bgo.2	-	4	1195	c.821C>T	c.(820-822)TCG>TTG	p.S274L	WNT7B_uc010haa.2_Missense_Mutation_p.S278L	NM_058238	NP_478679	P56706	WNT7B_HUMAN	wingless-type MMTV integration site family,	274					activation of JUN kinase activity|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|central nervous system vasculogenesis|chorio-allantoic fusion|developmental growth involved in morphogenesis|embryonic placenta morphogenesis|establishment or maintenance of polarity of embryonic epithelium|fibroblast proliferation|forebrain regionalization|inner medullary collecting duct development|lens fiber cell development|lobar bronchus development|lung epithelium development|lung morphogenesis|lung-associated mesenchyme development|mammary gland epithelium development|metanephric collecting duct development|metanephric loop of Henle development|metanephros morphogenesis|negative regulation of smoothened signaling pathway|outer medullary collecting duct development|oxygen homeostasis|positive regulation of JNK cascade|positive regulation of osteoblast differentiation|renal inner medulla development|renal outer medulla development|stem cell proliferation|synapse organization|trachea cartilage morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled binding|signal transducer activity			lung(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|LUAD - Lung adenocarcinoma(64;0.247)		GTAGTTGGGCGACTTCTCAAT	0.667													39	67					0	0	1	0	0
WNT7B	7477	broad.mit.edu	37	22	46327170	46327170	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46327170C>T	uc003bgo.2	-	3	752	c.378G>A	c.(376-378)GGG>GGA	p.G126G	WNT7B_uc010haa.2_Silent_p.G130G	NM_058238	NP_478679	P56706	WNT7B_HUMAN	wingless-type MMTV integration site family,	126					activation of JUN kinase activity|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|central nervous system vasculogenesis|chorio-allantoic fusion|developmental growth involved in morphogenesis|embryonic placenta morphogenesis|establishment or maintenance of polarity of embryonic epithelium|fibroblast proliferation|forebrain regionalization|inner medullary collecting duct development|lens fiber cell development|lobar bronchus development|lung epithelium development|lung morphogenesis|lung-associated mesenchyme development|mammary gland epithelium development|metanephric collecting duct development|metanephric loop of Henle development|metanephros morphogenesis|negative regulation of smoothened signaling pathway|outer medullary collecting duct development|oxygen homeostasis|positive regulation of JNK cascade|positive regulation of osteoblast differentiation|renal inner medulla development|renal outer medulla development|stem cell proliferation|synapse organization|trachea cartilage morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled binding|signal transducer activity			lung(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|LUAD - Lung adenocarcinoma(64;0.247)		TGCTCAGGTTCCCTTGGCTGC	0.687													25	47					0	0	1	0	0
PPARA	5465	broad.mit.edu	37	22	46615854	46615854	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46615854C>T	uc003bgw.1	+	7	920	c.654C>T	c.(652-654)TTC>TTT	p.F218F	PPARA_uc003bgx.1_Silent_p.F218F|PPARA_uc010hab.1_Silent_p.F218F|PPARA_uc003bha.2_Silent_p.F218F|PPARA_uc003bhb.1_Silent_p.F218F|PPARA_uc010hac.1_Intron	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	218					fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	TGAAGAACTTCAACATGAACA	0.453													4	40					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653509	46653509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46653509C>T	uc003bhh.2	-	1	5711	c.5711G>A	c.(5710-5712)AGC>AAC	p.S1904N		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1904	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CAGCCAATTGCTTTCTTGAAG	0.398													34	89					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46655306	46655306	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46655306C>T	uc003bhh.2	-	1	3914	c.3914G>A	c.(3913-3915)CGA>CAA	p.R1305Q		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1305	Cytoplasmic (Potential).|PLAT.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GCTAGGCGATCGACCCTCGTT	0.453													16	105					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46655520	46655520	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46655520C>T	uc003bhh.2	-	1	3700	c.3700G>A	c.(3700-3702)GTG>ATG	p.V1234M		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1234	Cytoplasmic (Potential).|PLAT.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AAAATAGTCACCAAGTAGCAT	0.443													52	104					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46656462	46656462	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46656462C>T	uc003bhh.2	-	1	2758	c.2758G>A	c.(2758-2760)GAT>AAT	p.D920N		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	920	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TTTTCCTGATCATTTAACCAA	0.438													69	159					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657680	46657680	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46657680C>T	uc003bhh.2	-	1	1540	c.1540G>A	c.(1540-1542)GGA>AGA	p.G514R		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	514	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CCATTCCTTCCTGTTACAGTT	0.388													89	217					0	0	1	0	0
TTC38	55020	broad.mit.edu	37	22	46669961	46669961	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46669961C>T	uc003bhi.2	+	4	436	c.360C>T	c.(358-360)GCC>GCT	p.A120A	TTC38_uc011aqx.1_Silent_p.A120A	NM_017931	NP_060401	Q5R3I4	TTC38_HUMAN	tetratricopeptide repeat domain 38	120	TPR 1.						binding			ovary(1)	1						AGACATTTGCCAATGGGTGAG	0.622													18	37					0	0	1	0	0
TTC38	55020	broad.mit.edu	37	22	46685431	46685431	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46685431C>T	uc003bhi.2	+	12	1291	c.1215C>T	c.(1213-1215)ATC>ATT	p.I405I	TTC38_uc011aqx.1_Silent_p.I347I	NM_017931	NP_060401	Q5R3I4	TTC38_HUMAN	tetratricopeptide repeat domain 38	405							binding			ovary(1)	1						GCTACCGGATCGTCCAGCTCG	0.721													8	25					0	0	1	0	0
GTSE1	51512	broad.mit.edu	37	22	46704372	46704372	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46704372C>T	uc011aqy.1	+	4	506	c.294C>T	c.(292-294)TTC>TTT	p.F98F	GTSE1_uc011aqz.1_5'UTR	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	79					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		GGGAGAAGTTCGTGGAGGTGT	0.567													55	151					0	0	1	0	0
GTSE1	51512	broad.mit.edu	37	22	46712010	46712010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46712010C>T	uc011aqy.1	+	7	1345	c.1133C>T	c.(1132-1134)CCC>CTC	p.P378L	GTSE1_uc011aqz.1_Missense_Mutation_p.P225L|GTSE1_uc003bhl.1_Missense_Mutation_p.P3L|GTSE1_uc003bhm.1_Missense_Mutation_p.P3L	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	359					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		AGAATGGGACCCGCCATGCTG	0.567													38	48					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46782321	46782321	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46782321G>A	uc003bhw.1	-	19	6717	c.6717C>T	c.(6715-6717)TTC>TTT	p.F2239F	CELSR1_uc011arc.1_Silent_p.F560F	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2239	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TGACGATGACGAAGGGCCGCA	0.677													6	10					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46787167	46787167	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46787167G>A	uc003bhw.1	-	16	6166	c.6166C>T	c.(6166-6168)CCC>TCC	p.P2056S	CELSR1_uc011arc.1_Missense_Mutation_p.P377S	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2056	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		AATGCTTTGGGACAGCCATTG	0.617											OREG0026656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	27					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46835200	46835200	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46835200G>A	uc003bhw.1	-	3	4292	c.4292C>T	c.(4291-4293)CCT>CTT	p.P1431L		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1431	Extracellular (Potential).|EGF-like 3; calcium-binding.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CTCGCCAGGAGGACACACGCA	0.647													7	68					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46930133	46930133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:46930133G>A	uc003bhw.1	-	1	2935	c.2935C>T	c.(2935-2937)CTT>TTT	p.L979F		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	979	Extracellular (Potential).|Cadherin 7.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GAGGCGCTAAGGGGAGTGGGA	0.567													17	100					0	0	1	0	0
GRAMD4	23151	broad.mit.edu	37	22	47022730	47022730	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:47022730G>A	uc003bhx.2	+	1	73	c.34G>A	c.(34-36)GGT>AGT	p.G12S		NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	12					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		CAGGTTCAGAGGTCACAAGAG	0.562													14	65					0	0	1	0	0
GRAMD4	23151	broad.mit.edu	37	22	47062746	47062746	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:47062746C>T	uc003bhx.2	+	9	873	c.834C>T	c.(832-834)ATC>ATT	p.I278I	GRAMD4_uc010had.2_Silent_p.I217I	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	278					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		AGTGGAGCATCGTGCCCGAAG	0.617													45	104					0	0	1	0	0
CERK	64781	broad.mit.edu	37	22	47116007	47116007	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:47116007G>A	uc003bia.2	-	3	462	c.355C>T	c.(355-357)CTG>TTG	p.L119L		NM_022766	NP_073603	Q8TCT0	CERK1_HUMAN	ceramide kinase	119	Required for binding to sulfatide and phosphoinositides.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|ceramide metabolic process	integral to membrane of membrane fraction|membrane|nucleus	ATP binding|ceramide kinase activity|diacylglycerol kinase activity|magnesium ion binding			skin(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ATCTCCCGCAGGGTCTGCAGC	0.572													26	73					0	0	1	0	0
TBC1D22A	25771	broad.mit.edu	37	22	47193357	47193357	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:47193357C>T	uc003bib.2	+	4	612	c.477C>T	c.(475-477)GCC>GCT	p.A159A	TBC1D22A_uc010haf.2_Silent_p.A129A|TBC1D22A_uc003bic.2_Intron|TBC1D22A_uc003bie.2_Intron|TBC1D22A_uc003bid.2_RNA|TBC1D22A_uc010hag.2_RNA|TBC1D22A_uc003bif.2_Silent_p.A112A	NM_014346	NP_055161	Q8WUA7	TB22A_HUMAN	TBC1 domain family, member 22A	159						intracellular	protein homodimerization activity|Rab GTPase activator activity			ovary(1)	1		all_cancers(38;4.44e-05)|all_epithelial(38;0.000507)|Breast(42;0.0488)|all_lung(38;0.0682)|Ovarian(80;0.0731)|all_neural(38;0.0966)|Glioma(61;0.222)|Lung SC(80;0.236)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0347)|BRCA - Breast invasive adenocarcinoma(115;0.231)		CCAGCGATGCCGCCCCTCTGC	0.632											OREG0026659	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	128					0	0	1	0	0
BRD1	23774	broad.mit.edu	37	22	50169713	50169713	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50169713G>A	uc003biv.2	-	10	3310	c.2823C>T	c.(2821-2823)CCC>CCT	p.P941P	BRD1_uc011arf.1_Silent_p.P667P|BRD1_uc011arg.1_Silent_p.P990P|BRD1_uc011arh.1_Silent_p.P941P|BRD1_uc003biu.3_Silent_p.P1072P	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	941	PWWP.				histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CCGGGTAGGAGGGGTAGCCGC	0.692													21	34					0	0	1	0	0
IL17REL	400935	broad.mit.edu	37	22	50436142	50436142	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50436142C>T	uc003bje.1	-	12	1081	c.849G>A	c.(847-849)CGG>CGA	p.R283R		NM_001001694	NP_001001694	Q6ZVW7	I17EL_HUMAN	interleukin 17 receptor E-like	283										pancreas(1)	1		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		CGAAAGGGCACCGCACCCAGG	0.478													15	58					0	0	1	0	0
TTLL8	164714	broad.mit.edu	37	22	50472793	50472794	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50472793_50472794CC>TA	uc011ark.1	-	9	1019_1020	c.1019_1020GG>TA	c.(1018-1020)CGG>CTA	p.R340L		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		CACCTCGGCCCCGGGACTTGGC	0.599													5	41					0	0	1	0	0
TTLL8	164714	broad.mit.edu	37	22	50480161	50480161	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50480161G>A	uc011ark.1	-	7	719	c.719C>T	c.(718-720)GCC>GTC	p.A240V		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		CCCCAGGTAGGCCTGGCACAC	0.612													7	15					0	0	1	0	0
TTLL8	164714	broad.mit.edu	37	22	50488621	50488621	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50488621C>T	uc011ark.1	-	2	107	c.107G>A	c.(106-108)CGA>CAA	p.R36Q		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		GCCCTTCCTTCGCAGAGCGGC	0.473													6	14					0	0	1	0	0
MLC1	23209	broad.mit.edu	37	22	50521574	50521574	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50521574G>A	uc003bjg.1	-	3	479	c.206C>T	c.(205-207)TCG>TTG	p.S69L	MLC1_uc011arl.1_Missense_Mutation_p.S69L|MLC1_uc003bjh.1_Missense_Mutation_p.S69L|MLC1_uc011arm.1_Intron|MLC1_uc011arn.1_5'UTR|MLC1_uc011aro.1_Missense_Mutation_p.S69L	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	69	Helical; (Potential).					basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		CAGGTACAGCGAAAACCCCGA	0.607													26	72					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50546582	50546582	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50546582G>A	uc003bjj.2	+	4	543	c.460G>A	c.(460-462)GGA>AGA	p.G154R	MOV10L1_uc003bjk.3_Missense_Mutation_p.G154R|MOV10L1_uc011arp.1_Missense_Mutation_p.G134R|MOV10L1_uc010han.2_Missense_Mutation_p.G134R	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	154					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		GCCCTGCAAGGGAGACTGGGT	0.532													11	28					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50552915	50552915	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50552915C>T	uc003bjj.2	+	7	1073	c.990C>T	c.(988-990)CCC>CCT	p.P330P	MOV10L1_uc003bjk.3_Silent_p.P330P|MOV10L1_uc011arp.1_Silent_p.P310P|MOV10L1_uc011arq.1_Silent_p.P91P|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	330					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		AGATGTGCCCCGTGGTATCTT	0.383													20	78					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50553013	50553013	+	Missense_Mutation	SNP	C	T	T	rs149927638	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50553013C>T	uc003bjj.2	+	7	1171	c.1088C>T	c.(1087-1089)TCG>TTG	p.S363L	MOV10L1_uc003bjk.3_Missense_Mutation_p.S363L|MOV10L1_uc011arp.1_Missense_Mutation_p.S343L|MOV10L1_uc011arq.1_Missense_Mutation_p.S124L|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	363					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		TCTCAGATGTCGGAGAGCAGT	0.473													16	65					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50596572	50596572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50596572C>T	uc003bjj.2	+	23	3236	c.3153C>T	c.(3151-3153)GCC>GCT	p.A1051A	MOV10L1_uc003bjk.3_Silent_p.A1051A|MOV10L1_uc011arp.1_Silent_p.A1031A|MOV10L1_uc003bjl.2_Silent_p.A178A|MOV10L1_uc003bjm.1_Silent_p.A94A	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	1051					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		GCCTCCTGGCCCACAGCATCT	0.652													13	55					0	0	1	0	0
PANX2	56666	broad.mit.edu	37	22	50615655	50615655	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50615655C>T	uc003bjn.3	+	2	514	c.514C>T	c.(514-516)CGC>TGC	p.R172C	PANX2_uc003bjp.3_Missense_Mutation_p.R38C|PANX2_uc003bjo.3_Missense_Mutation_p.R172C	NM_052839	NP_443071	Q96RD6	PANX2_HUMAN	pannexin 2 isoform 1	172	Cytoplasmic (Potential).				protein hexamerization|synaptic transmission	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity			breast(1)	1		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		GGCCGAGGGCCGCGCGCCCAA	0.662													7	17					0	0	1	0	0
PANX2	56666	broad.mit.edu	37	22	50615914	50615914	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50615914C>T	uc003bjn.3	+	2	773	c.773C>T	c.(772-774)ACC>ATC	p.T258I	PANX2_uc003bjp.3_Missense_Mutation_p.T124I|PANX2_uc003bjo.3_Missense_Mutation_p.T258I	NM_052839	NP_443071	Q96RD6	PANX2_HUMAN	pannexin 2 isoform 1	258	Extracellular (Potential).				protein hexamerization|synaptic transmission	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity			breast(1)	1		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		AACGAGTTCACCTGCGCGCTG	0.692													4	9					0	0	1	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50658827	50658827	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50658827G>A	uc003bkb.1	-	16	4473	c.3961C>T	c.(3961-3963)CTG>TTG	p.L1321L	TUBGCP6_uc003bka.1_Silent_p.L408L|TUBGCP6_uc010har.1_Silent_p.L1313L|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1321					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TCTACAGGCAGCCGTGGCCCA	0.682													11	33					0	0	1	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50660972	50660972	+	Missense_Mutation	SNP	G	A	A	rs144692967	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50660972G>A	uc003bkb.1	-	14	2832	c.2320C>T	c.(2320-2322)CGG>TGG	p.R774W	TUBGCP6_uc003bka.1_5'Flank|TUBGCP6_uc010har.1_Missense_Mutation_p.R766W|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'UTR	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	774					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TTCTGCTCCCGACGAGCTGCC	0.567													23	49					0	0	1	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50662634	50662634	+	Missense_Mutation	SNP	G	A	A	rs139968102		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50662634G>A	uc003bkb.1	-	13	2718	c.2206C>T	c.(2206-2208)CGT>TGT	p.R736C	TUBGCP6_uc003bka.1_5'Flank|TUBGCP6_uc010har.1_Missense_Mutation_p.R736C|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'UTR|TUBGCP6_uc003bkd.1_Missense_Mutation_p.R90C	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	736					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CGGAGTTCACGGGCGTAGCTG	0.617													14	51					0	0	1	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50671870	50671870	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50671870G>A	uc003bkb.1	-	3	1503	c.991C>T	c.(991-993)CTC>TTC	p.L331F	TUBGCP6_uc010har.1_Missense_Mutation_p.L331F|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	331					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		AGCAGCTGGAGCTCCCCTTGG	0.647													8	19					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50719833	50719833	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50719833G>A	uc003bkv.3	-	22	3724	c.3618C>T	c.(3616-3618)ATC>ATT	p.I1206I	PLXNB2_uc003bkt.1_5'UTR|PLXNB2_uc003bku.1_Silent_p.I191I	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1206	Helical; (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCATGGGCACGATGACCAGCG	0.677													6	19					0	0	1	0	0
FAM116B	414918	broad.mit.edu	37	22	50757412	50757412	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50757412G>A	uc011aru.1	-	3	270	c.198C>T	c.(196-198)TTC>TTT	p.F66F	FAM116B_uc011arv.1_Silent_p.F66F	NM_001001794	NP_001001794	Q8NEG7	F116B_HUMAN	family with sequence similarity 116, member B	66											0		all_cancers(38;4.34e-09)|all_epithelial(38;3.03e-08)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CTGTGAGCCGGAAGTCGTTCG	0.577													10	7					0	0	1	0	0
SBF1	6305	broad.mit.edu	37	22	50895042	50895042	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50895042G>A	uc003blh.2	-	30	4160	c.3965C>T	c.(3964-3966)TCC>TTC	p.S1322F	SBF1_uc003ble.2_5'Flank|SBF1_uc003blf.2_5'Flank|SBF1_uc011arx.1_Missense_Mutation_p.S960F	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1296	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		AGCTAGCCGGGAGCCCACATC	0.677													6	16					0	0	1	0	0
SBF1	6305	broad.mit.edu	37	22	50903491	50903491	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50903491G>A	uc003blh.2	-	12	1466	c.1271C>T	c.(1270-1272)GCC>GTC	p.A424V	SBF1_uc011arx.1_Missense_Mutation_p.A88V|SBF1_uc003bli.2_Missense_Mutation_p.A425V	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	424	dDENN.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GCCAGCAAAGGCCATGCCCTC	0.647													15	27					0	0	1	0	0
MIOX	55586	broad.mit.edu	37	22	50927994	50927995	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50927994_50927995CC>TT	uc003bll.1	+	9	784_785	c.670_671CC>TT	c.(670-672)CCC>TTC	p.P224F	MIOX_uc003blm.1_Missense_Mutation_p.P224F|MIOX_uc003bln.1_Intron	NM_017584	NP_060054	Q9UGB7	MIOX_HUMAN	myo-inositol oxygenase	224					inositol catabolic process	cytoplasm|inclusion body	aldo-keto reductase (NADP) activity|ferric iron binding|inositol oxygenase activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CTCCTTCTACCCCTGGCACACG	0.678													16	29					0	0	1	0	0
LMF2	91289	broad.mit.edu	37	22	50941853	50941853	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50941853G>A	uc003blp.2	-	14	2122	c.2091C>T	c.(2089-2091)TCC>TCT	p.S697S	LMF2_uc010hba.2_Silent_p.S519S|LMF2_uc003blo.2_Silent_p.S672S	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	697						endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TCGAACTACTGGAGCAGGGGT	0.677													15	28					0	0	1	0	0
LMF2	91289	broad.mit.edu	37	22	50944496	50944496	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50944496G>A	uc003blp.2	-	5	773	c.742C>T	c.(742-744)CGA>TGA	p.R248*	LMF2_uc010hba.2_Nonsense_Mutation_p.R70*|LMF2_uc003blo.2_Nonsense_Mutation_p.R223*|NCAPH2_uc003blq.3_5'Flank|NCAPH2_uc003blv.2_5'Flank|NCAPH2_uc003blr.3_5'Flank|NCAPH2_uc010hbb.2_5'Flank|NCAPH2_uc003blu.3_5'Flank|NCAPH2_uc003bls.3_5'Flank|NCAPH2_uc003blt.3_5'Flank|NCAPH2_uc003blw.3_5'Flank|NCAPH2_uc003blx.3_5'Flank|NCAPH2_uc003bly.3_5'Flank	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	248						endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CGCAGGCGTCGAATGGGGGCG	0.647													5	3					0	0	1	0	0
NCAPH2	29781	broad.mit.edu	37	22	50956060	50956060	+	Silent	SNP	C	T	T	rs150150677		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50956060C>T	uc003blr.3	+	4	443	c.321C>T	c.(319-321)AGC>AGT	p.S107S	NCAPH2_uc003blq.3_Silent_p.S107S|NCAPH2_uc003blv.2_Silent_p.S107S|NCAPH2_uc010hbb.2_5'UTR|NCAPH2_uc003blu.3_RNA|NCAPH2_uc003bls.3_RNA|NCAPH2_uc003blt.3_RNA|NCAPH2_uc003blw.3_RNA|NCAPH2_uc003blx.3_Silent_p.S107S|NCAPH2_uc003bly.3_RNA	NM_152299	NP_689512	Q6IBW4	CNDH2_HUMAN	kleisin beta isoform 2	107					chromosome condensation	chromosome|nucleus				ovary(1)|skin(1)	2		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.212)		GGGTTGCCAGCTCCGGGGTCC	0.652													26	74					0	0	1	0	0
KLHDC7B	113730	broad.mit.edu	37	22	50987862	50987862	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50987862C>T	uc003bmi.2	+	1	1401	c.1267C>T	c.(1267-1269)CCG>TCG	p.P423S		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	423	Kelch 3.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GTGCTACGACCCGCGAACAGA	0.687													24	109					0	0	1	0	0
KLHDC7B	113730	broad.mit.edu	37	22	50987912	50987912	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50987912C>T	uc003bmi.2	+	1	1451	c.1317C>T	c.(1315-1317)TTC>TTT	p.F439F		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	439	Kelch 3.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CAGGCACCTTCCCTGTGGCCC	0.652													28	85					0	0	1	0	0
KLHDC7B	113730	broad.mit.edu	37	22	50987943	50987944	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:50987943_50987944GG>AA	uc003bmi.2	+	1	1482_1483	c.1348_1349GG>AA	c.(1348-1350)GGG>AAG	p.G450K		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	450										central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GGCCTGCCGTGGGGACATCTAC	0.673													32	77					0	0	1	0	0
CHKB	1120	broad.mit.edu	37	22	51017915	51017915	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:51017915G>A	uc003bms.2	-	10	1271	c.1053C>T	c.(1051-1053)TTC>TTT	p.F351F	CPT1B_uc003bmk.3_5'Flank|CPT1B_uc003bml.2_5'Flank|CPT1B_uc003bmm.2_5'Flank|CPT1B_uc003bmo.2_5'Flank|CPT1B_uc011asa.1_5'Flank|CPT1B_uc003bmn.2_5'Flank|CPT1B_uc011asb.1_5'Flank|CHKB-CPT1B_uc003bmp.2_5'UTR|CHKB-CPT1B_uc003bmt.1_Silent_p.F142F|CHKB-CPT1B_uc003bmu.2_Silent_p.F230F|CHKB_uc003bmv.2_Silent_p.F351F	NM_005198	NP_005189	Q9Y259	CHKB_HUMAN	choline kinase beta	351					phosphatidylethanolamine biosynthetic process		ATP binding|choline kinase activity|ethanolamine kinase activity				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;4.04e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.79e-74)|Epithelial(4;6.17e-70)|GBM - Glioblastoma multiforme(4;5.68e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.205)	Choline(DB00122)	GACCCCAGAAGAAATGGGATG	0.562													6	35					0	0	1	0	0
CHKB	1120	broad.mit.edu	37	22	51018247	51018247	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:51018247G>A	uc003bms.2	-	9	1158	c.940C>T	c.(940-942)CGT>TGT	p.R314C	CPT1B_uc003bmk.3_5'Flank|CPT1B_uc003bml.2_5'Flank|CPT1B_uc003bmm.2_5'Flank|CPT1B_uc003bmo.2_5'Flank|CPT1B_uc011asa.1_5'Flank|CPT1B_uc003bmn.2_5'Flank|CPT1B_uc011asb.1_5'Flank|CHKB-CPT1B_uc003bmp.2_5'Flank|CHKB-CPT1B_uc003bmt.1_Missense_Mutation_p.R105C|CHKB-CPT1B_uc003bmu.2_Missense_Mutation_p.R193C|CHKB_uc003bmv.2_Missense_Mutation_p.R314C	NM_005198	NP_005189	Q9Y259	CHKB_HUMAN	choline kinase beta	314					phosphatidylethanolamine biosynthetic process		ATP binding|choline kinase activity|ethanolamine kinase activity				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;4.04e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.79e-74)|Epithelial(4;6.17e-70)|GBM - Glioblastoma multiforme(4;5.68e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.205)	Choline(DB00122)	AGGTAATGACGAATAAAATGC	0.488													58	119					0	0	1	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51041867	51041867	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:51041867C>T	uc003bmx.2	+	3	504	c.387C>T	c.(385-387)TCC>TCT	p.S129S	MAPK8IP2_uc003bmy.2_Silent_p.S102S|MAPK8IP2_uc011asc.1_5'Flank	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	129	JNK-binding domain (JBD).				behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCTCCCCTTCCGTGGAGGAGC	0.622													6	9					0	0	1	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51043813	51043813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:51043813C>T	uc003bmx.2	+	7	1900	c.1783C>T	c.(1783-1785)CTT>TTT	p.L595F	MAPK8IP2_uc003bmy.2_Missense_Mutation_p.L568F|MAPK8IP2_uc011asc.1_5'UTR	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	595					behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GTCCTTTGGCCTTTTCTCCTG	0.647													6	38					0	0	1	0	0
SHANK3	85358	broad.mit.edu	37	22	51143224	51143224	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:51143224C>T	uc003bne.1	+	16	1878	c.1878C>T	c.(1876-1878)CTC>CTT	p.L626L	SHANK3_uc003bnf.1_Silent_p.L81L	NM_001080420	NP_001073889	F2Z3L0	F2Z3L0_HUMAN	SH3 and multiple ankyrin repeat domains 3	626										central_nervous_system(1)	1		all_cancers(38;3.75e-11)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.22)		TGCAGTATCTCGAGTCGGTGG	0.667													5	22					0	0	1	0	0
SHANK3	85358	broad.mit.edu	37	22	51160458	51160458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:51160458C>T	uc003bne.1	+	22	4245	c.4245C>T	c.(4243-4245)TTC>TTT	p.F1415F	SHANK3_uc003bnf.1_Silent_p.F862F|SHANK3_uc010hbg.1_Silent_p.F597F	NM_001080420	NP_001073889	F2Z3L0	F2Z3L0_HUMAN	SH3 and multiple ankyrin repeat domains 3	1415										central_nervous_system(1)	1		all_cancers(38;3.75e-11)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.22)		ACACCTCCTTCGCTGACGGAC	0.632													13	11					0	0	1	0	0
ACR	49	broad.mit.edu	37	22	51177731	51177731	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr22:51177731C>T	uc003bnh.3	+	2	122	c.110C>T	c.(109-111)CCA>CTA	p.P37L	uc003bng.2_5'Flank|ACR_uc010hbh.1_Missense_Mutation_p.P37L	NM_001097	NP_001088	P10323	ACRO_HUMAN	acrosin precursor	37					acrosome matrix dispersal|activation of adenylate cyclase activity	acrosomal matrix|protein complex	amidase activity|copper ion binding|DNA binding|drug binding|fucose binding|mannose binding|protein binding|serine-type endopeptidase activity|zinc ion binding				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;1.1e-06)|LUAD - Lung adenocarcinoma(64;0.247)		AGGCAAAACCCACAGGGTGGT	0.597													4	17					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	402001	402001	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:402001G>A	uc003bou.2	+	11	1423	c.1152G>A	c.(1150-1152)AGG>AGA	p.R384R	CHL1_uc003bot.2_Silent_p.R400R|CHL1_uc003bow.1_Silent_p.R384R|CHL1_uc011asi.1_Silent_p.R400R	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	384	Ig-like C2-type 4.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TCTTCCCCAGGGAAATCAGTT	0.378													29	109					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	424297	424297	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:424297G>A	uc003bou.2	+	17	2342	c.2071G>A	c.(2071-2073)GAA>AAA	p.E691K	CHL1_uc003bot.2_Missense_Mutation_p.E707K|CHL1_uc003bow.1_Missense_Mutation_p.E691K|CHL1_uc011asi.1_Missense_Mutation_p.E707K|uc003box.1_RNA	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	691	Fibronectin type-III 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		AGCCGTGAACGAAGTAGGGAG	0.463													28	45					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	425526	425526	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:425526G>A	uc003bou.2	+	18	2427	c.2156G>A	c.(2155-2157)AGG>AAG	p.R719K	CHL1_uc003bot.2_Missense_Mutation_p.R735K|CHL1_uc003bow.1_Missense_Mutation_p.R719K|CHL1_uc011asi.1_Missense_Mutation_p.R735K|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	719	Fibronectin type-III 2.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CAAAACATAAGGGTTCAAGCC	0.353													28	72					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	432479	432479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:432479G>A	uc003bou.2	+	20	2789	c.2518G>A	c.(2518-2520)GGA>AGA	p.G840R	CHL1_uc003bot.2_Missense_Mutation_p.G856R|CHL1_uc003bow.1_Missense_Mutation_p.G840R|CHL1_uc011asi.1_Missense_Mutation_p.G856R	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	840	Fibronectin type-III 3.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CAGAGTACATGGACGTCTGAA	0.383													9	70					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	432714	432714	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:432714G>A	uc003bou.2	+	21	2886	c.2615G>A	c.(2614-2616)GGA>GAA	p.G872E	CHL1_uc003bot.2_Missense_Mutation_p.G888E|CHL1_uc003bow.1_Missense_Mutation_p.G872E|CHL1_uc011asi.1_Missense_Mutation_p.G888E	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	872	Fibronectin type-III 3.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		AGATTTTCAGGACAAAGAAAC	0.363													31	69					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1189698	1189698	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:1189698G>A	uc003boz.2	+	2	273	c.6G>A	c.(4-6)AGG>AGA	p.R2R	CNTN6_uc010hbo.2_5'UTR|CNTN6_uc011asj.1_Intron|CNTN6_uc003bpa.2_Silent_p.R2R	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	2					axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TGGAAATGAGGTTGCTATGGA	0.348													16	134					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1367606	1367606	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:1367606T>G	uc003boz.2	+	9	1321	c.1054T>G	c.(1054-1056)TTA>GTA	p.L352V	CNTN6_uc011asj.1_Missense_Mutation_p.L280V|CNTN6_uc003bpa.2_Missense_Mutation_p.L352V	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	352	Ig-like C2-type 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		GTATACATGGTTAAAAAATGG	0.363													34	58					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1415401	1415401	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:1415401C>T	uc003boz.2	+	15	2167	c.1900C>T	c.(1900-1902)CAG>TAG	p.Q634*	CNTN6_uc011asj.1_Nonsense_Mutation_p.Q562*|CNTN6_uc003bpa.2_Nonsense_Mutation_p.Q634*	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	634	Fibronectin type-III 1.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		ATTTACTATTCAGACTCGGAC	0.383													39	86					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1418759	1418759	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:1418759G>A	uc003boz.2	+	17	2433	c.2166G>A	c.(2164-2166)GAG>GAA	p.E722E	CNTN6_uc011asj.1_Silent_p.E650E|CNTN6_uc003bpa.2_Silent_p.E722E	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	722	Fibronectin type-III 2.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TTACGTGGGAGGTAATTTTCT	0.398													43	99					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1427378	1427378	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:1427378G>A	uc003boz.2	+	20	2868	c.2601G>A	c.(2599-2601)ACG>ACA	p.T867T	CNTN6_uc011asj.1_Silent_p.T795T|CNTN6_uc003bpa.2_Silent_p.T867T	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	867	Fibronectin type-III 3.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		AAAACATCACGGGGCTGAAAG	0.428													50	128					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1443182	1443182	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:1443182G>A	uc003boz.2	+	21	3037	c.2770G>A	c.(2770-2772)GAG>AAG	p.E924K	CNTN6_uc011asj.1_Missense_Mutation_p.E852K|CNTN6_uc003bpa.2_Missense_Mutation_p.E924K	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	924	Fibronectin type-III 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		CTTGAACTGGGAGCATGTAAA	0.353													14	58					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1444083	1444083	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:1444083G>A	uc003boz.2	+	22	3166	c.2899G>A	c.(2899-2901)GAA>AAA	p.E967K	CNTN6_uc011asj.1_Missense_Mutation_p.E895K|CNTN6_uc003bpa.2_Missense_Mutation_p.E967K	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	967	Fibronectin type-III 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		GGTTCCATTTGAAGAAGACTA	0.368													16	73					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2942488	2942488	+	Missense_Mutation	SNP	G	A	A	rs145270510	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:2942488G>A	uc003bpc.2	+	10	1281	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	CNTN4_uc003bpb.1_Missense_Mutation_p.E26K|CNTN4_uc003bpd.1_Missense_Mutation_p.E354K|CNTN4_uc003bpe.2_Missense_Mutation_p.E26K|CNTN4_uc003bpf.2_Missense_Mutation_p.E26K	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	354	Ig-like C2-type 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AAAAAATGGCGAACCTCTGCT	0.398													29	79					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2967321	2967321	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:2967321C>T	uc003bpc.2	+	12	1437	c.1216C>T	c.(1216-1218)CCA>TCA	p.P406S	CNTN4_uc003bpb.1_Missense_Mutation_p.P78S|CNTN4_uc003bpd.1_Missense_Mutation_p.P406S|CNTN4_uc003bpe.2_Missense_Mutation_p.P78S|CNTN4_uc003bpf.2_Missense_Mutation_p.P78S	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	406	Ig-like C2-type 5.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AGCTGTAGGTCCAGATTTTTC	0.323													33	125					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2967436	2967436	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:2967436G>A	uc003bpc.2	+	12	1552	c.1331G>A	c.(1330-1332)GGA>GAA	p.G444E	CNTN4_uc003bpb.1_Missense_Mutation_p.G116E|CNTN4_uc003bpd.1_Missense_Mutation_p.G444E|CNTN4_uc003bpe.2_Missense_Mutation_p.G116E|CNTN4_uc003bpf.2_Missense_Mutation_p.G116E	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	444	Ig-like C2-type 5.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TGGAAGAAAGGAAGGGATATA	0.338													27	114					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	3076327	3076327	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3076327C>T	uc003bpc.2	+	16	2016	c.1795C>T	c.(1795-1797)CCC>TCC	p.P599S	CNTN4_uc003bpb.1_Missense_Mutation_p.P270S|CNTN4_uc003bpd.1_Missense_Mutation_p.P599S|CNTN4_uc003bpe.2_Missense_Mutation_p.P271S|CNTN4_uc003bpf.2_Missense_Mutation_p.P270S	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	599	Fibronectin type-III 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TCCTCCAGGTCCCCCAGAGGC	0.527													13	41					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	3076448	3076448	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3076448C>T	uc003bpc.2	+	16	2137	c.1916C>T	c.(1915-1917)TCC>TTC	p.S639F	CNTN4_uc003bpb.1_Missense_Mutation_p.S310F|CNTN4_uc003bpd.1_Missense_Mutation_p.S639F|CNTN4_uc003bpe.2_Missense_Mutation_p.S311F|CNTN4_uc003bpf.2_Missense_Mutation_p.S310F	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	639	Fibronectin type-III 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ACTCCATTCTCCGTGGGCTGG	0.537													26	78					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	3084090	3084090	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3084090G>A	uc003bpc.2	+	20	2716	c.2495G>A	c.(2494-2496)CGA>CAA	p.R832Q	CNTN4_uc003bpb.1_Missense_Mutation_p.R503Q|CNTN4_uc003bpe.2_Missense_Mutation_p.R504Q|CNTN4_uc003bpf.2_Missense_Mutation_p.R503Q|CNTN4_uc003bpg.2_Missense_Mutation_p.R88Q	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	832	Fibronectin type-III 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AATAGAGGACGAATACAAGGT	0.463													19	36					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	3084710	3084710	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3084710G>A	uc003bpc.2	+	21	2782	c.2561G>A	c.(2560-2562)CGA>CAA	p.R854Q	CNTN4_uc003bpb.1_Missense_Mutation_p.R525Q|CNTN4_uc003bpe.2_Missense_Mutation_p.R526Q|CNTN4_uc003bpf.2_Missense_Mutation_p.R525Q|CNTN4_uc003bpg.2_Missense_Mutation_p.R110Q	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	854	Fibronectin type-III 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AGAAAAATACGAACAGTTGGA	0.383													11	39					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	3085322	3085322	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3085322C>T	uc003bpc.2	+	22	2966	c.2745C>T	c.(2743-2745)TCC>TCT	p.S915S	CNTN4_uc003bpe.2_Silent_p.S587S|CNTN4_uc003bpf.2_Silent_p.S586S|CNTN4_uc003bpg.2_Silent_p.S171S	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	915	Fibronectin type-III 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		CATCAGACTCCAAAATTATCC	0.368													23	67					0	0	1	0	0
IL5RA	3568	broad.mit.edu	37	3	3118303	3118303	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3118303C>T	uc011ask.1	-	11	1647	c.1003G>A	c.(1003-1005)GAA>AAA	p.E335K	IL5RA_uc010hbq.2_Missense_Mutation_p.E240K|IL5RA_uc010hbr.2_Missense_Mutation_p.E126K|IL5RA_uc010hbs.2_Missense_Mutation_p.E335K|IL5RA_uc011asl.1_Missense_Mutation_p.E335K|IL5RA_uc010hbp.2_Missense_Mutation_p.E46K	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	335	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		GGCTTGTGTTCATCATTTCCT	0.313													8	51					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3886395	3886395	+	Missense_Mutation	SNP	G	A	A	rs140162397		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3886395G>A	uc003bpt.3	+	2	831	c.70G>A	c.(70-72)GAG>AAG	p.E24K	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	24						integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		TTCATTAACCGAGTCTTCCAT	0.473													6	77					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3886707	3886707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3886707G>A	uc003bpt.3	+	2	1143	c.382G>A	c.(382-384)GAA>AAA	p.E128K	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	128	LRR 3.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		GCATTTGGAGGAAAATCAGAT	0.418													26	67					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3886862	3886862	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3886862G>A	uc003bpt.3	+	2	1298	c.537G>A	c.(535-537)TTG>TTA	p.L179L	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	179	LRR 5.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CCAACAAATTGAAAGTTATTG	0.383													56	167					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3887076	3887076	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3887076C>T	uc003bpt.3	+	2	1512	c.751C>T	c.(751-753)CTG>TTG	p.L251L	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	251	LRR 8.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		TGATAACAAACTGGTTAAAGT	0.403													53	142					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3887440	3887440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3887440C>T	uc003bpt.3	+	2	1876	c.1115C>T	c.(1114-1116)CCC>CTC	p.P372L	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	372	LRRCT.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CATAGCAATCCCCTCAGGTGT	0.488													21	71					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3888393	3888393	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:3888393G>A	uc003bpt.3	+	2	2829	c.2068G>A	c.(2068-2070)GGT>AGT	p.G690S	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	690	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CCTCTGGGAAGGTGACAGCGA	0.423													25	38					0	0	1	0	0
SETMAR	6419	broad.mit.edu	37	3	4354988	4354988	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4354988C>T	uc011asp.1	+	2	630	c.563C>T	c.(562-564)TCC>TTC	p.S188F	SUMF1_uc003bps.1_Intron|SETMAR_uc003bpw.3_Missense_Mutation_p.S175F|SETMAR_uc003bpy.3_Intron|SETMAR_uc011asq.1_Intron|SETMAR_uc011asr.1_Intron|SETMAR_uc010hbx.2_5'UTR	NM_006515	NP_006506	Q53H47	SETMR_HUMAN	SET domain and mariner transposase fusion	175	SET.|Histone-lysine N-methyltransferase.				DNA integration|DNA repair|transposition, DNA-mediated	chromosome|nucleus	DNA binding|endonuclease activity|histone-lysine N-methyltransferase activity|transposase activity|zinc ion binding			ovary(1)	1		Melanoma(143;0.0657)		Epithelial(13;0.0025)|OV - Ovarian serous cystadenocarcinoma(96;0.011)|all cancers(10;0.0114)		CAAACAAAATCCGACTCCAAT	0.363								Chromatin_Structure|Direct_reversal_of_damage					26	71					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4693861	4693861	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4693861C>T	uc003bqa.2	+	11	1258	c.910C>T	c.(910-912)CGT>TGT	p.R304C	ITPR1_uc010hca.1_Missense_Mutation_p.R304C|ITPR1_uc011asu.1_Missense_Mutation_p.R304C|ITPR1_uc010hcb.1_Missense_Mutation_p.R304C	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	304	Cytoplasmic (Potential).|MIR 4.				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		CAGCCTTTTCCGTTTCAAGCA	0.522													5	19					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4702675	4702675	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4702675C>T	uc003bqa.2	+	14	1503	c.1155C>T	c.(1153-1155)AAC>AAT	p.N385N	ITPR1_uc010hca.1_Silent_p.N370N|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Silent_p.N370N	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	385	MIR 5.|Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		CTGTTAGGAACTCTTATGTTC	0.368													10	32					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4703806	4703806	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4703806C>T	uc003bqa.2	+	15	1640	c.1292C>T	c.(1291-1293)GCC>GTC	p.A431V	ITPR1_uc010hca.1_Missense_Mutation_p.A416V|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Missense_Mutation_p.A416V	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	431	MIR 5.|Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GAAGCATTTGCCATAGTTCCG	0.493													30	70					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4718406	4718406	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4718406G>A	uc003bqa.2	+	24	3209	c.2861G>A	c.(2860-2862)GGC>GAC	p.G954D	ITPR1_uc010hca.1_Missense_Mutation_p.G939D|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Missense_Mutation_p.G948D	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	963	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GCCCCTGAAGGCAATGTGAAG	0.552													12	23					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4730287	4730287	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4730287C>T	uc003bqa.2	+	31	4132	c.3784C>T	c.(3784-3786)CTG>TTG	p.L1262L	ITPR1_uc010hca.1_Silent_p.L1247L|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.L193L	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1271	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		ACACATAAACCTGTTTCTCAA	0.458													5	59					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4732836	4732836	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4732836G>A	uc003bqa.2	+	32	4158	c.3810G>A	c.(3808-3810)GAG>GAA	p.E1270E	ITPR1_uc010hca.1_Silent_p.E1255E|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.E201E	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1279	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGATCCTGGAGGCAGTAACCA	0.443													3	22					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4808358	4808358	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4808358G>A	uc003bqa.2	+	42	5893	c.5545G>A	c.(5545-5547)GAT>AAT	p.D1849N	ITPR1_uc010hca.1_Missense_Mutation_p.D1834N|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.D819N	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1897	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AAAGAAAGACGATGAGGTAGA	0.438													21	37					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4829647	4829647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4829647G>A	uc003bqa.2	+	49	6836	c.6488G>A	c.(6487-6489)CGA>CAA	p.R2163Q	ITPR1_uc010hca.1_Missense_Mutation_p.R2148Q|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.R1133Q	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2211	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGATTAGACCGAACAATGGAA	0.383													5	18					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4829654	4829654	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4829654G>A	uc003bqa.2	+	49	6843	c.6495G>A	c.(6493-6495)ATG>ATA	p.M2165I	ITPR1_uc010hca.1_Missense_Mutation_p.M2150I|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.M1135I	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2213	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		ACCGAACAATGGAACAGATAG	0.383													6	20					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4836859	4836859	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4836859G>A	uc003bqa.2	+	50	7123	c.6775G>A	c.(6775-6777)GGA>AGA	p.G2259R	ITPR1_uc010hca.1_Missense_Mutation_p.G2244R|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.G1229R|ITPR1_uc010hcc.1_Missense_Mutation_p.G27R	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2307	Lumenal (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		CCCGTTTAAGGGAGTCCGAGG	0.483													10	28					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4853129	4853129	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:4853129G>A	uc003bqa.2	+	53	7657	c.7309G>A	c.(7309-7311)GAA>AAA	p.E2437K	ITPR1_uc010hca.1_Missense_Mutation_p.E2422K|ITPR1_uc011asu.1_Missense_Mutation_p.E448K|ITPR1_uc003bqc.2_Missense_Mutation_p.E1407K|ITPR1_uc010hcc.1_Missense_Mutation_p.E205K|ITPR1_uc011asv.1_Missense_Mutation_p.E161K	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2485	Lumenal (Potential).|Interaction with ERP44 (By similarity).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GCTGCCCAATGAAACAGCTGT	0.383													27	81					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	6903240	6903240	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:6903240C>T	uc003bqm.2	+	1	439	c.165C>T	c.(163-165)TTC>TTT	p.F55F	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.F55F|GRM7_uc003bql.2_Silent_p.F55F	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	55	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GGGGGCTGTTCCCCGTGCACG	0.692													3	9					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	6903304	6903304	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:6903304C>T	uc003bqm.2	+	1	503	c.229C>T	c.(229-231)CAC>TAC	p.H77Y	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.H77Y|GRM7_uc003bql.2_Missense_Mutation_p.H77Y	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	77	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AAACGGGATCCACAGGCTGGA	0.647													5	25					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7340402	7340403	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:7340402_7340403CC>TT	uc003bqm.2	+	3	1042_1043	c.768_769CC>TT	c.(766-771)ATCCCC>ATTTCC	p.P257S	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.P257S|GRM7_uc003bql.2_Missense_Mutation_p.P257S|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	257	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CCGTGAGAATCCCCCAGGAACG	0.47													33	63					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7620138	7620138	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:7620138C>T	uc003bqm.2	+	8	1819	c.1545C>T	c.(1543-1545)GTC>GTT	p.V515V	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.V515V|GRM7_uc003bql.2_Silent_p.V515V|GRM7_uc003bqn.1_Silent_p.V98V|GRM7_uc010hch.1_Silent_p.V26V	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	515	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GTAAAGGAGTCCGAGAGATAC	0.463													18	55					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7620296	7620296	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:7620296G>A	uc003bqm.2	+	8	1977	c.1703G>A	c.(1702-1704)AGG>AAG	p.R568K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.R568K|GRM7_uc003bql.2_Missense_Mutation_p.R568K|GRM7_uc003bqn.1_Missense_Mutation_p.R151K|GRM7_uc010hch.1_Missense_Mutation_p.R79K	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	568	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TATGACCAGAGGCCCAATGAA	0.522													53	97					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7620855	7620855	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:7620855C>T	uc003bqm.2	+	8	2536	c.2262C>T	c.(2260-2262)CTC>CTT	p.L754L	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.L754L|GRM7_uc003bql.2_Silent_p.L754L|GRM7_uc003bqn.1_Silent_p.L337L|GRM7_uc010hch.1_Silent_p.L265L	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	754	Helical; Name=5; (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TTACAGATCTCCAAATCATTT	0.443													39	79					0	0	1	0	0
C3orf32	51066	broad.mit.edu	37	3	8673774	8673774	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:8673774C>T	uc003bqu.2	-	5	541	c.295G>A	c.(295-297)GAA>AAA	p.E99K	C3orf32_uc003bqz.2_Missense_Mutation_p.E99K|C3orf32_uc003bqt.2_Missense_Mutation_p.E48K|C3orf32_uc011atg.1_Missense_Mutation_p.E121K|C3orf32_uc003bqv.2_Missense_Mutation_p.E48K|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_RNA|C3orf32_uc003bqy.2_Missense_Mutation_p.E99K	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	99										skin(1)	1						ATCCTGGATTCACTAAAGGTC	0.413													27	74					0	0	1	0	0
C3orf32	51066	broad.mit.edu	37	3	8675490	8675490	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:8675490G>A	uc003bqu.2	-	4	381	c.135C>T	c.(133-135)GTC>GTT	p.V45V	C3orf32_uc003bqz.2_Silent_p.V45V|C3orf32_uc003bqt.2_Intron|C3orf32_uc011atg.1_Intron|C3orf32_uc003bqv.2_Intron|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_Intron|C3orf32_uc003bqy.2_Silent_p.V45V	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	45										skin(1)	1						CTCTGCAGGGGACCGAACAGA	0.652													9	22					0	0	1	0	0
C3orf32	51066	broad.mit.edu	37	3	8675522	8675522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:8675522G>A	uc003bqu.2	-	4	349	c.103C>T	c.(103-105)CCT>TCT	p.P35S	C3orf32_uc003bqz.2_Missense_Mutation_p.P35S|C3orf32_uc003bqt.2_Intron|C3orf32_uc011atg.1_Intron|C3orf32_uc003bqv.2_Intron|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_Intron|C3orf32_uc003bqy.2_Missense_Mutation_p.P35S	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	35										skin(1)	1						TTCTGGGAAGGGCCTGTGGAC	0.647													8	14					0	0	1	0	0
OXTR	5021	broad.mit.edu	37	3	8794753	8794753	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:8794753C>T	uc003brc.2	-	4	1702	c.1080G>A	c.(1078-1080)ACG>ACA	p.T360T		NM_000916	NP_000907	P30559	OXYR_HUMAN	oxytocin receptor	360	Cytoplasmic (Potential).				female pregnancy|lactation|muscle contraction	integral to plasma membrane	oxytocin receptor activity|vasopressin receptor activity				0				OV - Ovarian serous cystadenocarcinoma(96;0.15)	Carbetocin(DB01282)	TGCTGGCACTCGTCTCTCCCA	0.622													29	50					0	0	1	0	0
SRGAP3	9901	broad.mit.edu	37	3	9027420	9027420	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9027420C>T	uc003brf.1	-	22	3759	c.3083G>A	c.(3082-3084)AGC>AAC	p.S1028N	SRGAP3_uc003brg.1_Missense_Mutation_p.S1004N	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	1028					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GGAGCTGCTGCTGCGGCGCAT	0.726			T	RAF1	pilocytic astrocytoma								28	41					0	0	1	0	0
SRGAP3	9901	broad.mit.edu	37	3	9034648	9034648	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9034648C>T	uc003brf.1	-	20	3176	c.2500G>A	c.(2500-2502)GAC>AAC	p.D834N	SRGAP3_uc003brg.1_Missense_Mutation_p.D810N	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	834					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GACTGGAGGTCGTTTTTGGAA	0.582			T	RAF1	pilocytic astrocytoma								20	64					0	0	1	0	0
SRGAP3	9901	broad.mit.edu	37	3	9036102	9036102	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9036102G>A	uc003brf.1	-	19	3009	c.2333C>T	c.(2332-2334)TCG>TTG	p.S778L	SRGAP3_uc003brg.1_Missense_Mutation_p.S754L	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	778	SH3.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CCAGTCCTCCGAGGCGCGGTG	0.587			T	RAF1	pilocytic astrocytoma								29	80					0	0	1	0	0
SRGAP3	9901	broad.mit.edu	37	3	9100069	9100069	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9100069C>T	uc003brf.1	-	7	1565	c.889G>A	c.(889-891)GAA>AAA	p.E297K	SRGAP3_uc003brg.1_Missense_Mutation_p.E297K|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brj.1_Missense_Mutation_p.E157K	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	297					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		TCCAGCCCTTCGTGGCGAGAG	0.552			T	RAF1	pilocytic astrocytoma								54	116					0	0	1	0	0
SRGAP3	9901	broad.mit.edu	37	3	9106080	9106080	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9106080C>T	uc003brf.1	-	5	1348	c.672G>A	c.(670-672)AAG>AAA	p.K224K	SRGAP3_uc003brg.1_Silent_p.K224K|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brk.2_Silent_p.K224K|SRGAP3_uc003brj.1_Silent_p.K84K	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	224					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CCCCACTCACCTTCTCCTTCA	0.607			T	RAF1	pilocytic astrocytoma								26	69					0	0	1	0	0
SETD5	55209	broad.mit.edu	37	3	9483820	9483820	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9483820C>T	uc003brt.2	+	10	1403	c.968C>T	c.(967-969)CCC>CTC	p.P323L	SETD5_uc003brs.1_Missense_Mutation_p.P304L|SETD5_uc003bru.2_Missense_Mutation_p.P225L|SETD5_uc003brv.2_Missense_Mutation_p.P212L|SETD5_uc010hck.2_5'UTR|SETD5_uc003brw.1_5'Flank|SETD5_uc003brx.2_5'Flank	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	323	SET.									ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		AGACCATACCCCTTTGTGCTC	0.418													7	20					0	0	1	0	0
SETD5	55209	broad.mit.edu	37	3	9488924	9488924	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9488924C>T	uc003brt.2	+	14	2150	c.1715C>T	c.(1714-1716)TCA>TTA	p.S572L	SETD5_uc003brs.1_Missense_Mutation_p.S553L|SETD5_uc003bru.2_Missense_Mutation_p.S474L|SETD5_uc003brv.2_Missense_Mutation_p.S461L|SETD5_uc010hck.2_Missense_Mutation_p.S54L|SETD5_uc003brx.2_Missense_Mutation_p.S241L	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	572										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		AACTCTGTTTCAAATGTTACC	0.458													61	139					0	0	1	0	0
SETD5	55209	broad.mit.edu	37	3	9489635	9489635	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9489635C>T	uc003brt.2	+	15	2483	c.2048C>T	c.(2047-2049)TCA>TTA	p.S683L	SETD5_uc003brs.1_Missense_Mutation_p.S664L|SETD5_uc003bru.2_Missense_Mutation_p.S585L|SETD5_uc003brv.2_Missense_Mutation_p.S572L|SETD5_uc010hck.2_Missense_Mutation_p.S165L|SETD5_uc003brx.2_Missense_Mutation_p.S352L	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	683										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		ACTGTGGTGTCAATTACTGGA	0.453													10	20					0	0	1	0	0
LHFPL4	375323	broad.mit.edu	37	3	9547825	9547825	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9547825C>T	uc003bry.2	-	3	755	c.469G>A	c.(469-471)GAC>AAC	p.D157N		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	157						integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					CCACACATGTCCCGGATGGTC	0.632													10	84					0	0	1	0	0
MTMR14	64419	broad.mit.edu	37	3	9730691	9730691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9730691C>T	uc003brz.2	+	16	1482	c.1358C>T	c.(1357-1359)TCC>TTC	p.S453F	MTMR14_uc003bsa.2_Missense_Mutation_p.S453F|MTMR14_uc003bsb.2_Missense_Mutation_p.S453F|MTMR14_uc011ath.1_RNA|MTMR14_uc010hcl.2_Missense_Mutation_p.S207F|MTMR14_uc003bsc.2_RNA	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	jumpy isoform 2	453						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(99;0.227)					ATGGAGAGTTCCCCAGGAGCC	0.602													31	72					0	0	1	0	0
CPNE9	151835	broad.mit.edu	37	3	9756994	9756994	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9756994C>T	uc003bsd.2	+	11	885	c.714C>T	c.(712-714)TTC>TTT	p.F238F		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	238	C2 2.									ovary(2)	2	Medulloblastoma(99;0.227)					TTGGTGAGTTCACCACCAGCT	0.567													14	71					0	0	1	0	0
OGG1	4968	broad.mit.edu	37	3	9798279	9798279	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9798279C>A	uc003bsi.2	+	5	1215	c.872C>A	c.(871-873)CCG>CAG	p.P291Q	OGG1_uc003bsh.2_Missense_Mutation_p.P291Q|OGG1_uc003bsj.2_Missense_Mutation_p.P291Q|OGG1_uc003bsk.2_Missense_Mutation_p.P291Q|OGG1_uc003bsl.2_Missense_Mutation_p.P291Q|OGG1_uc003bsm.2_Missense_Mutation_p.P291Q|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|OGG1_uc003bsp.1_Missense_Mutation_p.P56Q|OGG1_uc010hcm.1_Intron|OGG1_uc003bsq.1_Intron|OGG1_uc003bsr.1_Missense_Mutation_p.P56Q	NM_002542	NP_002533	O15527	OGG1_HUMAN	8-oxoguanine DNA-glycosylase 1 isoform 1a	291					depurination|nucleotide-excision repair|regulation of protein import into nucleus, translocation|regulation of transcription, DNA-dependent|response to oxidative stress|response to radiation	mitochondrion|nuclear matrix|nuclear speck	damaged DNA binding|endonuclease activity|oxidized purine base lesion DNA N-glycosylase activity|protein binding				0	Medulloblastoma(99;0.227)					GCGAAGGGACCGAGCCCCCAG	0.602								BER_DNA_glycosylases					18	47					1.00905e-13	1.01353e-13	1	1	0
CAMK1	8536	broad.mit.edu	37	3	9799447	9799447	+	Silent	SNP	C	T	T	rs141116659		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9799447C>T	uc003bst.2	-	11	1174	c.996G>A	c.(994-996)GCG>GCA	p.A332A	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_RNA|CAMK1_uc003bss.2_Silent_p.A106A|uc003bsv.1_5'Flank	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	332					cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		CCCCATGGCTCGCCGTCTGCC	0.652													25	72					0	0	1	0	0
CAMK1	8536	broad.mit.edu	37	3	9801402	9801402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9801402C>T	uc003bst.2	-	9	956	c.778G>A	c.(778-780)GAC>AAC	p.D260N	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_RNA|CAMK1_uc003bss.2_Missense_Mutation_p.D34N|uc003bsv.1_5'Flank	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	260	Protein kinase.				cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		TTCTCTGGGTCCTTCTCCATC	0.517													78	159					0	0	1	0	0
CAMK1	8536	broad.mit.edu	37	3	9804648	9804648	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9804648C>T	uc003bst.2	-	5	557	c.379G>A	c.(379-381)GAT>AAT	p.D127N	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_RNA|CAMK1_uc003bss.2_5'Flank|uc003bsv.1_RNA	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	127	Protein kinase.				cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		TTCACAGCATCCAGCACCTGG	0.607													15	42					0	0	1	0	0
RPUSD3	285367	broad.mit.edu	37	3	9882454	9882454	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9882454G>A	uc011atk.1	-	5	447	c.443C>T	c.(442-444)CCC>CTC	p.P148L	ARPC4_uc003btc.1_Intron|RPUSD3_uc011atl.1_Missense_Mutation_p.P133L|RPUSD3_uc011atm.1_Missense_Mutation_p.P140L|RPUSD3_uc003btn.2_3'UTR	NM_173659	NP_775930	Q6P087	RUSD3_HUMAN	RNA pseudouridylate synthase domain containing 3	148					pseudouridine synthesis		pseudouridine synthase activity|RNA binding			central_nervous_system(1)	1	Medulloblastoma(99;0.227)					AGCTGTCTGGGGACAGCTGGA	0.527													8	30					0	0	1	0	0
IL17RE	132014	broad.mit.edu	37	3	9944701	9944701	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9944701C>T	uc003btu.2	+	2	202	c.85C>T	c.(85-87)CGC>TGC	p.R29C	CIDEC_uc003bto.2_Intron|IL17RE_uc003btv.2_Missense_Mutation_p.R29C|IL17RE_uc011atn.1_RNA|IL17RE_uc003btw.2_Missense_Mutation_p.R29C|IL17RE_uc003btx.2_5'UTR|IL17RE_uc010hcq.2_Missense_Mutation_p.R29C|IL17RE_uc003bty.2_RNA	NM_153483	NP_705616	Q8NFR9	I17RE_HUMAN	interleukin 17 receptor E isoform 1	29	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane	receptor activity			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(96;5.34e-64)		GATTGGCTTTCGCCACCTGCC	0.612													36	75					0	0	1	0	0
IL17RC	84818	broad.mit.edu	37	3	9959119	9959119	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:9959119C>T	uc003bua.2	+	1	356	c.120C>T	c.(118-120)CCC>CCT	p.P40P	CIDEC_uc003bto.2_Intron|IL17RC_uc010hcr.2_Intron|IL17RC_uc011ato.1_Intron|IL17RC_uc010hcs.2_Intron|IL17RC_uc003btz.2_Intron|IL17RC_uc011atp.1_Intron|IL17RC_uc003bud.2_Intron|IL17RC_uc003bub.2_Intron|IL17RC_uc010hct.2_Intron|IL17RC_uc010hcu.2_Intron|IL17RC_uc010hcv.2_Intron|IL17RC_uc011atq.1_Intron|IL17RC_uc003buc.2_Intron	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	40	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						GTCTGGAACCCTGGGGAGACG	0.607													17	55					0	0	1	0	0
FANCD2	2177	broad.mit.edu	37	3	10081488	10081488	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10081488C>T	uc003buw.2	+	9	732	c.654C>T	c.(652-654)ATC>ATT	p.I218I	FANCD2_uc003bux.1_Silent_p.I218I|FANCD2_uc003buy.1_Silent_p.I218I|FANCD2_uc003buv.2_Silent_p.I218I	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	218	Interaction with FANCE.				DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		TACCTGAGATCCTAGGGGATT	0.512			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				18	81					0	0	1	0	0
FANCD2	2177	broad.mit.edu	37	3	10088351	10088351	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10088351C>T	uc003buw.2	+	15	1300	c.1222C>T	c.(1222-1224)CGA>TGA	p.R408*	FANCD2_uc003bux.1_Nonsense_Mutation_p.R408*|FANCD2_uc003buy.1_Nonsense_Mutation_p.R408*|FANCD2_uc010hcw.1_5'Flank	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	408					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		AAATAAGATTCGATCAGGCTG	0.338			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				25	116					0	0	1	0	0
FANCD2	2177	broad.mit.edu	37	3	10089688	10089688	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10089688C>T	uc003buw.2	+	16	1444	c.1366C>T	c.(1366-1368)CTC>TTC	p.L456F	FANCD2_uc003bux.1_Missense_Mutation_p.L456F|FANCD2_uc003buy.1_Missense_Mutation_p.L456F|FANCD2_uc010hcw.1_5'Flank	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	456					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		ATTTGGCAGTCTCCTATACAA	0.393			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				14	225					0	0	1	0	0
FANCD2	2177	broad.mit.edu	37	3	10140504	10140504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10140504C>T	uc003buw.2	+	43	4364	c.4286C>T	c.(4285-4287)TCT>TTT	p.S1429F	FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron|C3orf24_uc003buz.2_Intron	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	1429					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		ACTGAGGTATCTCTACAAAAC	0.448			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				32	68					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10242054	10242054	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10242054G>A	uc003bve.1	+	3	355	c.279G>A	c.(277-279)TGG>TGA	p.W93*		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	93	Death.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						TGTTTTCAGGGAAACCGGCTC	0.328													42	145					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10251308	10251308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10251308C>T	uc003bve.1	+	4	536	c.460C>T	c.(460-462)CTC>TTC	p.L154F		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	154					activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						GCCGGCCTTTCTCCAGCCTCC	0.602													116	232					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10255195	10255195	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10255195G>A	uc003bve.1	+	6	827	c.751G>A	c.(751-753)GAA>AAA	p.E251K		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	251	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						AGGATCAATCGAAAGATTCTT	0.393													9	102					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10261405	10261405	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10261405C>T	uc003bve.1	+	8	1021	c.945C>T	c.(943-945)ATC>ATT	p.I315I		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	315	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						GTGTCAGCATCTGCTCAGGGC	0.567													17	30					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10280488	10280488	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10280488C>T	uc003bve.1	+	12	1606	c.1530C>T	c.(1528-1530)CTC>CTT	p.L510L		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	510					activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						AGACGTTGCTCCCTTGGAGTG	0.557													33	133					0	0	1	0	0
TATDN2	9797	broad.mit.edu	37	3	10290984	10290984	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10290984C>T	uc003bvg.2	+	2	681	c.100C>T	c.(100-102)CCC>TCC	p.P34S	TATDN2_uc003bvf.2_Missense_Mutation_p.P34S|TATDN2_uc011atr.1_Missense_Mutation_p.P34S|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	34						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						TGATGTGGCCCCCTCCAGCCG	0.682													36	69					0	0	1	0	0
TATDN2	9797	broad.mit.edu	37	3	10291178	10291178	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10291178C>T	uc003bvg.2	+	2	875	c.294C>T	c.(292-294)TCC>TCT	p.S98S	TATDN2_uc003bvf.2_Silent_p.S98S|TATDN2_uc011atr.1_Silent_p.S98S|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	98						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						GGGCCGCCTCCAAAGGCTGCC	0.612													60	174					0	0	1	0	0
TATDN2	9797	broad.mit.edu	37	3	10291286	10291286	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10291286C>T	uc003bvg.2	+	2	983	c.402C>T	c.(400-402)GCC>GCT	p.A134A	TATDN2_uc003bvf.2_Silent_p.A134A|TATDN2_uc011atr.1_Silent_p.A134A|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	134						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						AGGAGGAAGCCTGCAGCCTTA	0.562													13	52					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10379965	10379965	+	Silent	SNP	C	T	T	rs141820572		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10379965C>T	uc003bvt.2	-	22	3754	c.3315G>A	c.(3313-3315)CCG>CCA	p.P1105P	ATP2B2_uc003bvv.2_Silent_p.P1060P|ATP2B2_uc003bvw.2_Silent_p.P1060P|ATP2B2_uc003bvs.2_5'Flank|ATP2B2_uc010hdo.2_Silent_p.P810P	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	1105	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GCTCCTCCTCCGGGATCTCCT	0.632													18	98					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10384494	10384494	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10384494C>T	uc003bvt.2	-	19	3298	c.2859G>A	c.(2857-2859)AAG>AAA	p.K953K	ATP2B2_uc003bvv.2_Silent_p.K908K|ATP2B2_uc003bvw.2_Silent_p.K908K|ATP2B2_uc010hdo.2_Silent_p.K658K	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	953	Helical; (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CCAGGATGTTCTTCATCATGG	0.632													6	53					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10387188	10387188	+	Silent	SNP	G	A	A	rs111706887		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10387188G>A	uc003bvt.2	-	18	3022	c.2583C>T	c.(2581-2583)ATC>ATT	p.I861I	ATP2B2_uc003bvv.2_Silent_p.I816I|ATP2B2_uc003bvw.2_Silent_p.I816I|ATP2B2_uc010hdo.2_Silent_p.I566I	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	861	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CTGCCTTGACGATGCTGCTGA	0.577													27	60					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10392112	10392112	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10392112G>A	uc003bvt.2	-	15	2725	c.2286C>T	c.(2284-2286)TTC>TTT	p.F762F	ATP2B2_uc003bvv.2_Silent_p.F717F|ATP2B2_uc003bvw.2_Silent_p.F717F|ATP2B2_uc010hdo.2_Silent_p.F467F	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	762	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TCCTCCTGTTGAACTCCTTGC	0.592													32	55					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10420095	10420095	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10420095C>T	uc003bvt.2	-	10	1482	c.1043_splice	c.e10-1	p.A348_splice	ATP2B2_uc003bvv.2_Splice_Site_p.A303_splice|ATP2B2_uc003bvw.2_Splice_Site_p.A303_splice|ATP2B2_uc010hdo.2_Splice_Site_p.A53_splice	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1						ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TGTTGTTTGGCTGCAGGGGGC	0.632													25	65					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10420946	10420946	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10420946C>T	uc003bvt.2	-	9	1462	c.1023G>A	c.(1021-1023)GTG>GTA	p.V341V	ATP2B2_uc003bvv.2_Intron|ATP2B2_uc003bvw.2_Intron|ATP2B2_uc010hdo.2_Silent_p.V46V	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	341	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GGCTGGCGTCCACATTGCCAT	0.517													13	31					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10429970	10429970	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10429970C>T	uc003bvt.2	-	6	1337	c.898G>A	c.(898-900)GAC>AAC	p.D300N	ATP2B2_uc003bvv.2_Missense_Mutation_p.D300N|ATP2B2_uc003bvw.2_Missense_Mutation_p.D300N|ATP2B2_uc010hdp.2_Missense_Mutation_p.D300N|ATP2B2_uc010hdo.2_Missense_Mutation_p.D36N	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	300	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CCTTTTTTGTCTTTCTTCTCT	0.423													31	232					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10452333	10452333	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10452333G>A	uc003bvt.2	-	3	805	c.366C>T	c.(364-366)TCC>TCT	p.S122S	ATP2B2_uc003bvv.2_Silent_p.S122S|ATP2B2_uc003bvw.2_Silent_p.S122S|ATP2B2_uc010hdp.2_Silent_p.S122S|ATP2B2_uc010hdo.2_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	122	Extracellular (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GGTGGTAGAAGGACAGCCCCA	0.642													74	215					0	0	1	0	0
SLC6A11	6538	broad.mit.edu	37	3	10885926	10885926	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10885926G>A	uc003bvz.2	+	5	685	c.651G>A	c.(649-651)GGG>GGA	p.G217G		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	217	Extracellular (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		TCTCTGACGGGATCGAGCACA	0.587													19	41					0	0	1	0	0
SLC6A11	6538	broad.mit.edu	37	3	10916776	10916776	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:10916776C>T	uc003bvz.2	+	6	921	c.887C>T	c.(886-888)CCC>CTC	p.P296L		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	296					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		CTCTCCGACCCCCAGGTAAGA	0.592													9	73					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11058943	11058943	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11058943G>A	uc010hdq.2	+	3	457	c.46G>A	c.(46-48)GAG>AAG	p.E16K		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	16	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GATCTCCACCGAGGTCAGCGA	0.642													16	55					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11059542	11059542	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11059542C>T	uc010hdq.2	+	4	663	c.252C>T	c.(250-252)ATC>ATT	p.I84I		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	84	Helical; Name=2; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	CCTTCCTGATCCCCTATTTCC	0.602													19	77					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11059584	11059584	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11059584C>T	uc010hdq.2	+	4	705	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	98	Helical; Name=2; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	TCCCACTCTTCCTGCTGGAGT	0.567													43	106					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11060364	11060364	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11060364C>T	uc010hdq.2	+	5	862	c.451C>T	c.(451-453)CTG>TTG	p.L151L		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	151	Extracellular (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	CATTTACTACCTGTACAACTC	0.582													13	36					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11067176	11067176	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11067176C>T	uc010hdq.2	+	8	1167	c.756C>T	c.(754-756)ATC>ATT	p.I252I		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	252	Helical; Name=5; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	TCATGCTGATCATCCTGTTCT	0.572													22	35					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11067975	11067975	+	Silent	SNP	C	T	T	rs144261418		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11067975C>T	uc010hdq.2	+	10	1419	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	336	Helical; Name=7; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	TCGCAGGATTCGTCATCTTCT	0.592													35	103					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11070974	11070974	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11070974G>A	uc010hdq.2	+	12	1670	c.1259G>A	c.(1258-1260)AGA>AAA	p.R420K		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	420					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	CGCAACCGCAGAGAGCTCTTC	0.567													9	28					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11071021	11071021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11071021C>T	uc010hdq.2	+	12	1717	c.1306C>T	c.(1306-1308)CTC>TTC	p.L436F		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	436	Helical; Name=9; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	CCTGATCGGTCTCTCTAACAT	0.592													9	43					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11078583	11078583	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11078583C>T	uc010hdq.2	+	16	2142	c.1731C>T	c.(1729-1731)ATC>ATT	p.I577I		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	577	Cytoplasmic (Potential).			I -> T (in Ref. 1; CAA38484).	neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GCGAAGACATCGTTCGCCCAG	0.632													30	71					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11078587	11078587	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11078587C>T	uc010hdq.2	+	16	2146	c.1735C>T	c.(1735-1737)CGC>TGC	p.R579C		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	579	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	AGACATCGTTCGCCCAGAGAA	0.637													29	72					0	0	1	0	0
HRH1	3269	broad.mit.edu	37	3	11300809	11300809	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11300809C>T	uc010hdr.2	+	2	428	c.86C>T	c.(85-87)CCC>CTC	p.P29L	HRH1_uc010hds.2_Missense_Mutation_p.P29L|HRH1_uc010hdt.2_Missense_Mutation_p.P29L|HRH1_uc003bwb.3_Missense_Mutation_p.P29L	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	29	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	CAGCTGATGCCCCTGGTGGTG	0.587													13	31					0	0	1	0	0
HRH1	3269	broad.mit.edu	37	3	11301398	11301398	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11301398G>A	uc010hdr.2	+	2	1017	c.675G>A	c.(673-675)GAG>GAA	p.E225E	HRH1_uc010hds.2_Silent_p.E225E|HRH1_uc010hdt.2_Silent_p.E225E|HRH1_uc003bwb.3_Silent_p.E225E	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	225	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	AGCACCGGGAGCTCATCAATA	0.542													32	71					0	0	1	0	0
HRH1	3269	broad.mit.edu	37	3	11301413	11301413	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11301413C>T	uc010hdr.2	+	2	1032	c.690C>T	c.(688-690)TCC>TCT	p.S230S	HRH1_uc010hds.2_Silent_p.S230S|HRH1_uc010hdt.2_Silent_p.S230S|HRH1_uc003bwb.3_Silent_p.S230S	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	230	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	TCAATAGGTCCCTCCCTTCCT	0.537													32	61					0	0	1	0	0
HRH1	3269	broad.mit.edu	37	3	11301421	11301421	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11301421C>T	uc010hdr.2	+	2	1040	c.698C>T	c.(697-699)TCC>TTC	p.S233F	HRH1_uc010hds.2_Missense_Mutation_p.S233F|HRH1_uc010hdt.2_Missense_Mutation_p.S233F|HRH1_uc003bwb.3_Missense_Mutation_p.S233F	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	233	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	TCCCTCCCTTCCTTCTCAGAA	0.532													10	62					0	0	1	0	0
HRH1	3269	broad.mit.edu	37	3	11301489	11301489	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11301489C>T	uc010hdr.2	+	2	1108	c.766C>T	c.(766-768)CCC>TCC	p.P256S	HRH1_uc010hds.2_Missense_Mutation_p.P256S|HRH1_uc010hdt.2_Missense_Mutation_p.P256S|HRH1_uc003bwb.3_Missense_Mutation_p.P256S	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	256	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	GAAGGAGTCTCCCTGGGAGGT	0.527													20	34					0	0	1	0	0
HRH1	3269	broad.mit.edu	37	3	11302032	11302032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11302032G>A	uc010hdr.2	+	2	1651	c.1309G>A	c.(1309-1311)GTC>ATC	p.V437I	HRH1_uc010hds.2_Missense_Mutation_p.V437I|HRH1_uc010hdt.2_Missense_Mutation_p.V437I|HRH1_uc003bwb.3_Missense_Mutation_p.V437I	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	437	Helical; Name=6; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	CTTCTTCATGGTCATTGCCTT	0.488													79	240					0	0	1	0	0
HRH1	3269	broad.mit.edu	37	3	11302087	11302087	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:11302087G>A	uc010hdr.2	+	2	1706	c.1364G>A	c.(1363-1365)TGG>TAG	p.W455*	HRH1_uc010hds.2_Nonsense_Mutation_p.W455*|HRH1_uc010hdt.2_Nonsense_Mutation_p.W455*|HRH1_uc003bwb.3_Nonsense_Mutation_p.W455*	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	455	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	TTCACCATCTGGCTGGGCTAC	0.453													41	208					0	0	1	0	0
SYN2	6854	broad.mit.edu	37	3	12192799	12192799	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12192799G>A	uc003bwm.2	+	9	911	c.747G>A	c.(745-747)CAG>CAA	p.Q249Q	SYN2_uc003bwl.1_Silent_p.Q249Q|SYN2_uc003bwn.2_5'UTR	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	249					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						TCATTGAACAGACATACTACC	0.438													7	29					0	0	1	0	0
SYN2	6854	broad.mit.edu	37	3	12203533	12203533	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12203533G>A	uc003bwm.2	+	11	1023	c.859G>A	c.(859-861)GAC>AAC	p.D287N	SYN2_uc003bwl.1_Missense_Mutation_p.D287N|SYN2_uc003bwn.2_5'UTR|TIMP4_uc003bwo.2_5'Flank	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	287					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AAACCACTACGACTTCCAGGA	0.527													21	29					0	0	1	0	0
SYN2	6854	broad.mit.edu	37	3	12211262	12211262	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12211262G>A	uc003bwm.2	+	14	1328	c.1164G>A	c.(1162-1164)ATG>ATA	p.M388I	SYN2_uc003bwl.1_Missense_Mutation_p.M388I|SYN2_uc003bwn.2_Missense_Mutation_p.M62I	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	388					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						ACCAGGTCATGGACTGTAGCA	0.512													14	38					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	12299326	12299326	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12299326C>T	uc003bwp.1	-	1		c.627G>A				NR_003112				NR_003112																		GCTGACTTCCCAAACAAAGGA	0.537													36	45					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	12299456	12299456	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12299456C>T	uc003bwp.1	-	1		c.497G>A				NR_003112				NR_003112																		ATATACAGTTCAGGTCAAGGA	0.468													23	44					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	12299510	12299510	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12299510G>A	uc003bwp.1	-	1		c.443C>T				NR_003112				NR_003112																		TGTCTCATGCGAACCATGGCC	0.483													15	65					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	12299525	12299525	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12299525C>T	uc003bwp.1	-	1		c.428G>A				NR_003112				NR_003112																		ATGGCCACTTCCCCAGAAACT	0.483													22	64					0	0	1	0	0
RAF1	5894	broad.mit.edu	37	3	12660110	12660110	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12660110G>A	uc003bxf.3	-	2	526	c.111C>T	c.(109-111)GGC>GGT	p.G37G	RAF1_uc011auu.1_5'UTR	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	37					activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	GGCGCTGATAGCCAAACTGCT	0.468			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				34	78					0	0	1	0	0
TMEM40	55287	broad.mit.edu	37	3	12780058	12780058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12780058C>T	uc003bxg.1	-	6	512	c.385G>A	c.(385-387)GAA>AAA	p.E129K	TMEM40_uc003bxh.1_Missense_Mutation_p.E99K|TMEM40_uc003bxi.1_Missense_Mutation_p.E53K|TMEM40_uc011auv.1_Missense_Mutation_p.E145K	NM_018306	NP_060776	Q8WWA1	TMM40_HUMAN	transmembrane protein 40	129						integral to membrane					0						TCACCTGATTCCCCAGAGGGT	0.547													36	102					0	0	1	0	0
CAND2	23066	broad.mit.edu	37	3	12845054	12845054	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12845054G>A	uc003bxk.2	+	2	185	c.136G>A	c.(136-138)GAG>AAG	p.E46K	CAND2_uc003bxj.2_Missense_Mutation_p.E46K	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	46	HEAT 2.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						CGAGGACAGCGAGCGCAAGGT	0.602													10	52					0	0	1	0	0
CAND2	23066	broad.mit.edu	37	3	12856867	12856867	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12856867G>A	uc003bxk.2	+	8	1283	c.1234G>A	c.(1234-1236)GGA>AGA	p.G412R	CAND2_uc003bxj.2_Missense_Mutation_p.G319R	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	412					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						GCCCCCGAAGGGATGGCTGGA	0.612													23	62					0	0	1	0	0
IQSEC1	9922	broad.mit.edu	37	3	12983267	12983267	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:12983267G>A	uc003bxt.2	-	2	173	c.164C>T	c.(163-165)CCG>CTG	p.P55L	IQSEC1_uc003bxu.3_5'UTR|IQSEC1_uc011auw.1_Missense_Mutation_p.P41L	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	55					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						GTAGTGATCCGGGCTCAGGCT	0.697													9	24					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13361447	13361447	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13361447G>A	uc003bxv.1	-	37	5282	c.5199C>T	c.(5197-5199)TTC>TTT	p.F1733F		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1733	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TCTCCTTTGCGAATGCCAGCA	0.627													17	58					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13363279	13363279	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13363279G>A	uc003bxv.1	-	36	5055	c.4972C>T	c.(4972-4974)CTG>TTG	p.L1658L		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1658	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TTCATGCTCAGGTGCTTCCGC	0.592													41	298					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13363724	13363724	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13363724G>A	uc003bxv.1	-	35	4967	c.4884C>T	c.(4882-4884)TTC>TTT	p.F1628F		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1628	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GCTCCACGGTGAACACATCTT	0.537													44	100					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13363829	13363829	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13363829G>A	uc003bxv.1	-	35	4862	c.4779C>T	c.(4777-4779)ACC>ACT	p.T1593T		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1593	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TCTGGGTGGGGGTGCACTCGC	0.622													31	74					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13381426	13381426	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13381426G>A	uc003bxv.1	-	25	3482	c.3399C>T	c.(3397-3399)ATC>ATT	p.I1133I		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1133	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TGCCGTTCCCGATGGCGAGGC	0.478													44	157					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13381784	13381784	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13381784G>A	uc003bxv.1	-	24	3326	c.3243C>T	c.(3241-3243)TTC>TTT	p.F1081F		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1081	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GCATCAGCCTGAACGGGGGAA	0.577													8	42					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13399748	13399748	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13399748G>A	uc003bxv.1	-	16	2385	c.2302C>T	c.(2302-2304)CCG>TCG	p.P768S	NUP210_uc003bxx.2_Missense_Mutation_p.P440S	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	768	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TGCAGCAGCGGACAGGACATG	0.667													20	88					0	0	1	0	0
FBLN2	2199	broad.mit.edu	37	3	13613147	13613147	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13613147G>A	uc011avb.1	+	2	1417	c.1292G>A	c.(1291-1293)AGA>AAA	p.R431K	FBLN2_uc011auz.1_Missense_Mutation_p.R457K|FBLN2_uc011ava.1_Missense_Mutation_p.R431K|FBLN2_uc011avc.1_Missense_Mutation_p.R431K	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	431	Subdomain NB (Cys-free).|N.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			TCTATCCCCAGAAGTAGCCCT	0.612													7	15					0	0	1	0	0
FBLN2	2199	broad.mit.edu	37	3	13659684	13659684	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13659684G>A	uc011avb.1	+	6	1963	c.1838G>A	c.(1837-1839)GGA>GAA	p.G613E	FBLN2_uc011auz.1_Missense_Mutation_p.G639E|FBLN2_uc011ava.1_Missense_Mutation_p.G613E|FBLN2_uc011avc.1_Missense_Mutation_p.G613E	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	613	EGF-like 1; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CTCCTCCCGGGAGAGCTGTGC	0.632													20	103					0	0	1	0	0
FBLN2	2199	broad.mit.edu	37	3	13660436	13660436	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13660436G>A	uc011avb.1	+	7	2097	c.1972G>A	c.(1972-1974)GAG>AAG	p.E658K	FBLN2_uc011auz.1_Missense_Mutation_p.E684K|FBLN2_uc011ava.1_Missense_Mutation_p.E658K|FBLN2_uc011avc.1_Missense_Mutation_p.E658K	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	658						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			AGCCCCACAGGAGCCTGCACT	0.602													6	25					0	0	1	0	0
WNT7A	7476	broad.mit.edu	37	3	13896295	13896295	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:13896295G>A	uc003bye.1	-	3	609	c.304C>T	c.(304-306)CGG>TGG	p.R102W		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	102					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						GCAGCCTCCCGGCTCCCTGCG	0.627													11	53					0	0	1	0	0
SLC6A6	6533	broad.mit.edu	37	3	14489121	14489121	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14489121C>T	uc010heg.2	+	12	687	c.396C>T	c.(394-396)TCC>TCT	p.S132S	SLC6A6_uc003byp.2_Silent_p.S132S|SLC6A6_uc010hef.1_RNA|SLC6A6_uc003byq.2_Silent_p.S132S|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	132	Helical; Name=3; (Potential).				cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						TAATTGTGTCCCTCCTGAATG	0.542													47	577					0	0	1	0	0
GRIP2	80852	broad.mit.edu	37	3	14548453	14548453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14548453C>T	uc011avi.1	-	20	2548	c.2548G>A	c.(2548-2550)GAG>AAG	p.E850K	GRIP2_uc010heh.2_RNA|GRIP2_uc011avh.1_Missense_Mutation_p.E381K	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	752					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						TCACTGGTCTCACTGAGGCTG	0.607													4	14					0	0	1	0	0
GRIP2	80852	broad.mit.edu	37	3	14561721	14561721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14561721G>A	uc011avi.1	-	10	1217	c.1217C>T	c.(1216-1218)TCG>TTG	p.S406L	GRIP2_uc011avh.1_5'UTR	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	309	PDZ 3.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						CTCAAGCAGCGAGCAGTGTTC	0.647													6	34					0	0	1	0	0
GRIP2	80852	broad.mit.edu	37	3	14567016	14567016	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14567016G>A	uc011avi.1	-	4	476	c.476C>T	c.(475-477)ACT>ATT	p.T159I	GRIP2_uc011avh.1_5'UTR|GRIP2_uc003byu.1_Silent_p.D64D|GRIP2_uc003byv.1_Missense_Mutation_p.T62I	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	62	PDZ 1.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						ACCTGAGATAGTCAGGCCCAG	0.617													27	59					0	0	1	0	0
GRIP2	80852	broad.mit.edu	37	3	14583423	14583423	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14583423C>T	uc011avi.1	-	1	166	c.166G>A	c.(166-168)GAG>AAG	p.E56K	GRIP2_uc011avh.1_5'Flank|GRIP2_uc003byv.1_5'Flank	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	Error:Variant_position_missing_in_Q9C0E4_after_alignment					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GGGAGAGGCTCGCCATGAAGA	0.557													3	12					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14724464	14724464	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14724464G>A	uc003byy.2	+	3	648	c.244G>A	c.(244-246)GAA>AAA	p.E82K	C3orf20_uc003byz.2_Intron|C3orf20_uc003bza.2_Intron|C3orf20_uc003byx.1_Missense_Mutation_p.E82K	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	82						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GGTGCTCATGGAACCCACCTT	0.507													14	43					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14724560	14724560	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14724560G>A	uc003byy.2	+	3	744	c.340G>A	c.(340-342)GCC>ACC	p.A114T	C3orf20_uc003byz.2_5'UTR|C3orf20_uc003bza.2_5'UTR|C3orf20_uc003byx.1_Missense_Mutation_p.A114T	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	114						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						CACTGGGGCAGCCAAGCGCTC	0.527													3	19					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14799050	14799050	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14799050C>T	uc003byy.2	+	13	2517	c.2113C>T	c.(2113-2115)CGA>TGA	p.R705*	C3orf20_uc003byz.2_Nonsense_Mutation_p.R583*|C3orf20_uc003bza.2_Nonsense_Mutation_p.R583*|C3orf20_uc003bzb.1_Nonsense_Mutation_p.R206*|C3orf20_uc011avj.1_Nonsense_Mutation_p.R32*	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	705						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GTTGGCGCCCCGAGACCCCAG	0.602													16	40					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14862327	14862327	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14862327C>T	uc003bzc.2	+	1	1859	c.1749C>T	c.(1747-1749)CTC>CTT	p.L583L	FGD5_uc011avk.1_Silent_p.L583L	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	583					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						AGGACAATCTCTCTCTGTCGT	0.562													17	59					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14862573	14862573	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14862573G>A	uc003bzc.2	+	1	2105	c.1995G>A	c.(1993-1995)ACG>ACA	p.T665T	FGD5_uc011avk.1_Silent_p.T665T	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	665					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						AGAAGAAGACGGAGAACAAAT	0.512													9	57					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14862740	14862740	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14862740C>T	uc003bzc.2	+	1	2272	c.2162C>T	c.(2161-2163)TCC>TTC	p.S721F	FGD5_uc011avk.1_Missense_Mutation_p.S721F	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	721					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						TCCCCCTCCTCCCTCATCTTT	0.582													25	61					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14905687	14905687	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14905687G>A	uc003bzc.2	+	2	2688	c.2578G>A	c.(2578-2580)GAG>AAG	p.E860K	FGD5_uc011avk.1_Missense_Mutation_p.E860K	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	860					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						AGCCCCCAAAGAGGACCTTAC	0.547													21	57					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14939133	14939133	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14939133C>T	uc003bzc.2	+	5	2976	c.2866C>T	c.(2866-2868)CAT>TAT	p.H956Y	FGD5_uc011avk.1_Missense_Mutation_p.H956Y|FGD5_uc003bzd.2_Missense_Mutation_p.H34Y	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	956	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CCACGACCTTCATCAAGGCAT	0.587													3	12					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14960278	14960278	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:14960278G>A	uc003bzc.2	+	13	3617	c.3507G>A	c.(3505-3507)ATG>ATA	p.M1169I	FGD5_uc011avk.1_Missense_Mutation_p.M1169I|FGD5_uc003bzd.2_Missense_Mutation_p.M247I	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	1169	PH 1.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GCCCTGTGATGGAGAAAGTGC	0.597													20	54					0	0	1	0	0
CAPN7	23473	broad.mit.edu	37	3	15265021	15265021	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:15265021C>T	uc003bzn.2	+	6	948	c.678C>T	c.(676-678)TTC>TTT	p.F226F		NM_014296	NP_055111	Q9Y6W3	CAN7_HUMAN	calpain 7	226					proteolysis	nucleus	calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1						ATGTTCCTTTCATGAATGTTG	0.318													29	105					0	0	1	0	0
SH3BP5	9467	broad.mit.edu	37	3	15303785	15303785	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:15303785C>T	uc003bzp.1	-	5	696	c.507G>A	c.(505-507)GCG>GCA	p.A169A	SH3BP5_uc010hem.1_Intron|SH3BP5_uc003bzq.1_Silent_p.A12A|SH3BP5_uc003bzr.1_Silent_p.A12A|uc003bzo.1_Intron	NM_004844	NP_004835	O60239	3BP5_HUMAN	SH3-domain binding protein 5 (BTK-associated)	169					intracellular signal transduction	mitochondrion	protein kinase inhibitor activity|SH3 domain binding				0						TGGTCTGCTCCGCCTCCATGA	0.378													18	57					0	0	1	0	0
MIR563	693148	broad.mit.edu	37	3	15915346	15915346	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:15915346C>T	hsa-mir-563|MI0003569	+			c.69C>T																				0						CATACGTTTCCCTGGTAGCCA	0.383													36	73					0	0	1	0	0
GALNTL2	117248	broad.mit.edu	37	3	16217068	16217068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:16217068C>T	uc003car.3	+	1	885	c.410C>T	c.(409-411)GCT>GTT	p.A137V	GALNTL2_uc003caq.3_Intron	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	137	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						GACTGGGGGGCTGATGAGGAC	0.637													16	22					0	0	1	0	0
GALNTL2	117248	broad.mit.edu	37	3	16242248	16242248	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:16242248G>A	uc003car.3	+	3	1304	c.829G>A	c.(829-831)GAT>AAT	p.D277N	GALNTL2_uc003caq.3_Missense_Mutation_p.D10N	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	277	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						AGCCACCGGGGATGTGCTCGT	0.622													17	30					0	0	1	0	0
RFTN1	23180	broad.mit.edu	37	3	16411595	16411595	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:16411595C>T	uc003cay.2	-	6	1300	c.1018G>A	c.(1018-1020)GGA>AGA	p.G340R	RFTN1_uc010hes.2_Missense_Mutation_p.G304R	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	340						plasma membrane				ovary(3)|central_nervous_system(1)	4						TTCACTATTCCAAGGTAGAAG	0.493													24	111					0	0	1	0	0
RFTN1	23180	broad.mit.edu	37	3	16411782	16411782	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:16411782C>T	uc003cay.2	-	6	1113	c.831G>A	c.(829-831)ATG>ATA	p.M277I	RFTN1_uc010hes.2_Missense_Mutation_p.M241I	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	277						plasma membrane				ovary(3)|central_nervous_system(1)	4						TGAAGATCTCCATTTCTGTTG	0.458													79	193					0	0	1	0	0
RFTN1	23180	broad.mit.edu	37	3	16475435	16475435	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:16475435G>A	uc003cay.2	-	3	537	c.255C>T	c.(253-255)TTC>TTT	p.F85F	RFTN1_uc010hes.2_Silent_p.F49F	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	85						plasma membrane				ovary(3)|central_nervous_system(1)	4						TGGGCTGCACGAAGGGGTGCA	0.642													36	164					0	0	1	0	0
RFTN1	23180	broad.mit.edu	37	3	16535241	16535241	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:16535241G>A	uc003cay.2	-	2	418	c.136C>T	c.(136-138)CTG>TTG	p.L46L		NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	46						plasma membrane				ovary(3)|central_nervous_system(1)	4						CCAGCACTCAGAGTCGTGAAC	0.547													70	207					0	0	1	0	0
DAZL	1618	broad.mit.edu	37	3	16636058	16636058	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:16636058C>T	uc003cbb.2	-	8	897	c.603G>A	c.(601-603)AGG>AGA	p.R201R	DAZL_uc003cba.2_Silent_p.R221R	NM_001351	NP_001342	Q92904	DAZL_HUMAN	deleted in azoospermia-like	201					germ cell development|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding|translation activator activity				0						CAACATAGCTCCTTTGCTCCC	0.308													18	31					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17051295	17051295	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:17051295C>T	uc011awc.1	+	5	538	c.433C>T	c.(433-435)CGC>TGC	p.R145C	PLCL2_uc010het.1_Missense_Mutation_p.R27C|PLCL2_uc011awd.1_Missense_Mutation_p.R27C	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	153	PH.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						CAAAAAGGTTCGCTCCAACTC	0.418													21	66					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17051521	17051521	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:17051521C>T	uc011awc.1	+	5	764	c.659C>T	c.(658-660)TCA>TTA	p.S220L	PLCL2_uc010het.1_Missense_Mutation_p.S102L|PLCL2_uc011awd.1_Missense_Mutation_p.S102L	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	228	PH.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						AATTATGAGTCACTGGATTTG	0.403													58	147					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17052326	17052326	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:17052326C>T	uc011awc.1	+	5	1569	c.1464C>T	c.(1462-1464)TTC>TTT	p.F488F	PLCL2_uc010het.1_Intron|PLCL2_uc011awd.1_Silent_p.F370F	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	496	PI-PLC X-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						AGATAGTTTTCCGCAGTGTCA	0.398													31	63					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17053020	17053020	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:17053020C>T	uc011awc.1	+	5	2263	c.2158C>T	c.(2158-2160)CTC>TTC	p.L720F	PLCL2_uc011awd.1_Missense_Mutation_p.L602F	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	728	PI-PLC Y-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TGGCTATGTCCTCCGGCCAGC	0.483													23	66					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17053361	17053361	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:17053361C>T	uc011awc.1	+	5	2604	c.2499C>T	c.(2497-2499)TTC>TTT	p.F833F	PLCL2_uc011awd.1_Silent_p.F715F	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	841	C2.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GGGATGAATTCATCGGCCAGT	0.468													41	102					0	0	1	0	0
TBC1D5	9779	broad.mit.edu	37	3	17208398	17208398	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:17208398G>A	uc003cbf.2	-	21	3620	c.1955C>T	c.(1954-1956)TCC>TTC	p.S652F	TBC1D5_uc010heu.2_Missense_Mutation_p.S239F|TBC1D5_uc010hev.2_Missense_Mutation_p.S674F|TBC1D5_uc003cbe.2_Missense_Mutation_p.S652F	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	652						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						AAAACGCAGGGAACCTTTTAG	0.448													18	37					0	0	1	0	0
TBC1D5	9779	broad.mit.edu	37	3	17279774	17279774	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:17279774G>A	uc003cbf.2	-	17	3134	c.1469C>T	c.(1468-1470)TCC>TTC	p.S490F	TBC1D5_uc010heu.2_Missense_Mutation_p.S77F|TBC1D5_uc010hev.2_Missense_Mutation_p.S490F|TBC1D5_uc003cbe.2_Missense_Mutation_p.S490F|TBC1D5_uc010hew.1_Missense_Mutation_p.S442F	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	490						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						AACAGAGGAGGAGCTACTGCT	0.512													14	55					0	0	1	0	0
TBC1D5	9779	broad.mit.edu	37	3	17418070	17418070	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:17418070G>A	uc003cbf.2	-	10	2313	c.648C>T	c.(646-648)GTC>GTT	p.V216V	TBC1D5_uc010hev.2_Silent_p.V216V|TBC1D5_uc003cbe.2_Silent_p.V216V|TBC1D5_uc010hew.1_Silent_p.V168V	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	216	Rab-GAP TBC.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						CACAGTGAAGGACAAAGACTA	0.418													19	67					0	0	1	0	0
SATB1	6304	broad.mit.edu	37	3	18391011	18391011	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:18391011C>T	uc003cbh.2	-	11	3678	c.1943G>A	c.(1942-1944)CGA>CAA	p.R648Q	SATB1_uc003cbi.2_Missense_Mutation_p.R680Q|SATB1_uc003cbj.2_Missense_Mutation_p.R648Q	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	648	Homeobox.			R->A: Reduced interaction with matrix attachment region (MAR) DNA; when associated with A-646.	cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						AATTTTTGTTCGTGGCCGGGT	0.587													35	87					0	0	1	0	0
SATB1	6304	broad.mit.edu	37	3	18391067	18391067	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:18391067G>A	uc003cbh.2	-	11	3622	c.1887C>T	c.(1885-1887)CCC>CCT	p.P629P	SATB1_uc003cbi.2_Silent_p.P661P|SATB1_uc003cbj.2_Silent_p.P629P	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	629					cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						AGGCCACCGTGGGTTGCCGTG	0.502													20	44					0	0	1	0	0
SATB1	6304	broad.mit.edu	37	3	18436239	18436239	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:18436239G>A	uc003cbh.2	-	7	2656	c.921C>T	c.(919-921)CTC>CTT	p.L307L	SATB1_uc003cbi.2_Silent_p.L307L|SATB1_uc003cbj.2_Silent_p.L307L	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	307					cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						GTGTTGATACGAGCCCAGGGT	0.572													22	99					0	0	1	0	0
SATB1	6304	broad.mit.edu	37	3	18456703	18456703	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:18456703G>A	uc003cbh.2	-	5	2274	c.539C>T	c.(538-540)CCT>CTT	p.P180L	SATB1_uc003cbi.2_Missense_Mutation_p.P180L|SATB1_uc003cbj.2_Missense_Mutation_p.P180L	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	180	PDZ-like dimerization domain.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						TTGTTCGGGAGGCAAGTCTTC	0.453													27	54					0	0	1	0	0
SATB1	6304	broad.mit.edu	37	3	18458484	18458484	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:18458484G>A	uc003cbh.2	-	3	2033	c.298C>T	c.(298-300)CTG>TTG	p.L100L	SATB1_uc003cbi.2_Silent_p.L100L|SATB1_uc003cbj.2_Silent_p.L100L	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	100	PDZ-like dimerization domain.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						TTTCTCACCAGCACAAATTCT	0.428													49	127					0	0	1	0	0
SATB1	6304	broad.mit.edu	37	3	18462396	18462396	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:18462396C>T	uc003cbh.2	-	2	1799	c.64G>A	c.(64-66)GAT>AAT	p.D22N	SATB1_uc003cbi.2_Missense_Mutation_p.D22N|SATB1_uc003cbj.2_Missense_Mutation_p.D22N	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	22	Nuclear localization signal.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						CCCTTCGGATCACTCACATTG	0.498													64	122					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19295170	19295170	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:19295170C>T	uc003cbk.1	+	2	296	c.101C>T	c.(100-102)GCC>GTC	p.A34V	KCNH8_uc011awe.1_Missense_Mutation_p.A34V|KCNH8_uc010hex.1_5'UTR	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	34	Cytoplasmic (Potential).|PAS.					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						CTTGCCAATGCCCAGGTGGCT	0.428													69	157					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19492780	19492780	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:19492780C>T	uc003cbk.1	+	10	1904	c.1709C>T	c.(1708-1710)TCT>TTT	p.S570F	KCNH8_uc011awe.1_3'UTR|KCNH8_uc010hex.1_Missense_Mutation_p.S31F|KCNH8_uc011awf.1_3'UTR	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	570	cNMP.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						ATCAAAACCTCTTTCTGTGCT	0.502													39	83					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19575479	19575479	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:19575479C>T	uc003cbk.1	+	16	3407	c.3212C>T	c.(3211-3213)TCT>TTT	p.S1071F	KCNH8_uc010hex.1_Missense_Mutation_p.S532F	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	1071	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TTACCAGGATCTTGGAACCAG	0.473													19	50					0	0	1	0	0
EFHB	151651	broad.mit.edu	37	3	19947154	19947154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:19947154C>T	uc003cbl.3	-	6	1572	c.1376G>A	c.(1375-1377)CGA>CAA	p.R459Q	EFHB_uc003cbm.2_Missense_Mutation_p.R329Q	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	459					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						TGCCATGGCTCGTCCATCATT	0.383													33	87					0	0	1	0	0
EFHB	151651	broad.mit.edu	37	3	19974856	19974856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:19974856G>A	uc003cbl.3	-	1	851	c.655C>T	c.(655-657)CCC>TCC	p.P219S	EFHB_uc003cbm.2_Missense_Mutation_p.P89S	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	219					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						TGGCATTGGGGAGGTTCTATC	0.502													33	86					0	0	1	0	0
KAT2B	8850	broad.mit.edu	37	3	20161138	20161138	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:20161138C>T	uc003cbq.2	+	8	1645	c.1199C>T	c.(1198-1200)TCA>TTA	p.S400L		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	400					cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AATTCAACCTCATCTTCCCTT	0.502													35	68					0	0	1	0	0
SGOL1	151648	broad.mit.edu	37	3	20216529	20216529	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:20216529G>A	uc003cbs.2	-	6	681	c.494C>T	c.(493-495)CCT>CTT	p.P165L	SGOL1_uc003cbr.2_Intron|SGOL1_uc010hfa.2_Missense_Mutation_p.P165L|SGOL1_uc003cbt.2_Missense_Mutation_p.P165L|SGOL1_uc003cbu.2_Missense_Mutation_p.P165L|SGOL1_uc003cbv.2_Missense_Mutation_p.P165L|SGOL1_uc003cbw.2_Intron|SGOL1_uc003cbx.2_Missense_Mutation_p.P165L|SGOL1_uc003cby.2_Intron|SGOL1_uc003cbz.2_Missense_Mutation_p.P165L|SGOL1_uc003cca.2_Missense_Mutation_p.P165L|SGOL1_uc003ccb.2_Missense_Mutation_p.P165L|SGOL1_uc003ccc.2_Intron	NM_001012410	NP_001012410	Q5FBB7	SGOL1_HUMAN	shugoshin-like 1 isoform A2	165	Necessary for interaction with PPP2CA and PPP2R1A.				attachment of spindle microtubules to kinetochore|cell division|centriole-centriole cohesion|meiotic chromosome segregation|mitotic prometaphase	centrosome|condensed chromosome kinetochore|cytosol|mitotic cohesin complex|spindle pole	protein binding				0						TGTGTCTTGAGGAATAGTAGG	0.308													22	43					0	0	1	0	0
VENTXP7	391518	broad.mit.edu	37	3	21447657	21447657	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:21447657G>A	uc003ccd.2	+	1		c.440G>A				NR_002311				Homo sapiens VENT homeobox (Xenopus laevis) pseudogene 7 (VENTXP7), non-coding RNA.												0						ATCGCCGGATGAAACACAAAC	0.577													6	9					0	0	1	0	0
ZNF385D	79750	broad.mit.edu	37	3	21478515	21478515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:21478515G>A	uc003cce.2	-	5	1028	c.620C>T	c.(619-621)TCG>TTG	p.S207L	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	207	Matrin-type 2.					nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						CTTGCATAGCGAACAGTAAAG	0.478													17	125					0	0	1	0	0
ZNF385D	79750	broad.mit.edu	37	3	21552453	21552454	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:21552453_21552454GG>AA	uc003cce.2	-	4	746_747	c.338_339CC>TT	c.(337-339)GCC>GTT	p.A113V	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	113						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						TATTTTTCATGGCTTCCAGTGC	0.465													29	77					0	0	1	0	0
ZNF385D	79750	broad.mit.edu	37	3	21606135	21606135	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:21606135C>T	uc003cce.2	-	3	615	c.207G>A	c.(205-207)GGG>GGA	p.G69G	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	69						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						GAAGAGGAACCCCGAATGTAT	0.343													24	84					0	0	1	0	0
ZNF385D	79750	broad.mit.edu	37	3	21606158	21606158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:21606158C>T	uc003cce.2	-	3	592	c.184G>A	c.(184-186)GCT>ACT	p.A62T	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	62						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						TTTATTACAGCTTTCTGAATC	0.348													26	66					0	0	1	0	0
ZNF385D	79750	broad.mit.edu	37	3	21606170	21606170	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:21606170G>A	uc003cce.2	-	3	580	c.172C>T	c.(172-174)CCG>TCG	p.P58S	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	58						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						TTCTGAATCGGGTCCATCTGT	0.358													18	69					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	22424080	22424080	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:22424080C>T	uc003ccf.2	+	1		c.35C>T								Homo sapiens HMG1 mRNA, 3' untranslated region.																		TGTACAGTGTCTTTTTTTGTA	0.363													10	22					0	0	1	0	0
UBE2E2	7325	broad.mit.edu	37	3	23250314	23250314	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:23250314G>A	uc003ccg.2	+	2	304	c.124G>A	c.(124-126)GAG>AAG	p.E42K	UBE2E2_uc010hfc.2_RNA	NM_152653	NP_689866	Q96LR5	UB2E2_HUMAN	ubiquitin-conjugating enzyme E2E 2	42					ISG15-protein conjugation|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination	nucleolus	ATP binding|ISG15 ligase activity|ubiquitin-protein ligase activity				0						CAAGAAAAAGGAGGGAAAAAT	0.388													16	50					0	0	1	0	0
UBE2E2	7325	broad.mit.edu	37	3	23541152	23541152	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:23541152C>T	uc003ccg.2	+	4	461	c.281C>T	c.(280-282)CCC>CTC	p.P94L	UBE2E2_uc010hfc.2_Intron	NM_152653	NP_689866	Q96LR5	UB2E2_HUMAN	ubiquitin-conjugating enzyme E2E 2	94					ISG15-protein conjugation|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination	nucleolus	ATP binding|ISG15 ligase activity|ubiquitin-protein ligase activity				0						ATATTGGGACCCCCAGGATCT	0.398													16	73					0	0	1	0	0
NR1D2	9975	broad.mit.edu	37	3	24003559	24003559	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:24003559C>T	uc003ccs.2	+	5	928	c.609C>T	c.(607-609)TTC>TTT	p.F203F	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Silent_p.F128F	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	203					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						ACAGCCAGTTCAGTGGTCACT	0.458													16	33					0	0	1	0	0
THRB	7068	broad.mit.edu	37	3	24164462	24164462	+	Silent	SNP	G	A	A	rs144206187	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:24164462G>A	uc003ccx.3	-	11	1648	c.1299C>T	c.(1297-1299)GCC>GCT	p.A433A	THRB_uc010hfe.2_Silent_p.A433A|THRB_uc003ccy.3_Silent_p.A433A|THRB_uc003ccz.3_Silent_p.A428A	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	433	Ligand-binding.|Interaction with NR2F6.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	TGGCATGGCAGGCTCCTATCA	0.498													63	133					0	0	1	0	0
THRB	7068	broad.mit.edu	37	3	24185163	24185163	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:24185163C>T	uc003ccx.3	-	8	916	c.567G>A	c.(565-567)AGG>AGA	p.R189R	THRB_uc010hfe.2_Silent_p.R189R|THRB_uc003ccy.3_Silent_p.R189R|THRB_uc003ccz.3_Silent_p.R184R	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	189					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	CTATCAGCTTCCTCTTGGCCA	0.562													25	66					0	0	1	0	0
THRB	7068	broad.mit.edu	37	3	24185170	24185170	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:24185170G>A	uc003ccx.3	-	8	909	c.560C>T	c.(559-561)GCC>GTC	p.A187V	THRB_uc010hfe.2_Missense_Mutation_p.A187V|THRB_uc003ccy.3_Missense_Mutation_p.A187V|THRB_uc003ccz.3_Missense_Mutation_p.A182V	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	187					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	CTTCCTCTTGGCCAGCCTCTT	0.572													6	83					0	0	1	0	0
THRB	7068	broad.mit.edu	37	3	24188277	24188277	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:24188277G>A	uc003ccx.3	-	7	770	c.421C>T	c.(421-423)CCA>TCA	p.P141S	THRB_uc010hfe.2_Missense_Mutation_p.P141S|THRB_uc003ccy.3_Missense_Mutation_p.P141S|THRB_uc003ccz.3_Missense_Mutation_p.P136S	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	141	Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	GAATAGGATGGATGGAGATTT	0.358													23	91					0	0	1	0	0
RARB	5915	broad.mit.edu	37	3	25216031	25216031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:25216031C>T	uc011awl.1	+	1	209	c.143C>T	c.(142-144)CCG>CTG	p.P48L		NM_016152	NP_057236	P10826	RARB_HUMAN	retinoic acid receptor, beta isoform 2	48	Modulating.				embryonic digestive tract development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	protein binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|large_intestine(1)|pancreas(1)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tamibarotene(DB04942)|Tazarotene(DB00799)	CATGGACATCCGCCTCCGAGT	0.557													23	68					0	0	1	0	0
TOP2B	7155	broad.mit.edu	37	3	25665215	25665215	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:25665215G>A	uc011awn.1	-	21	2561	c.2518C>T	c.(2518-2520)CCT>TCT	p.P840S	TOP2B_uc003cdj.2_Missense_Mutation_p.P835S	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	840					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TCCACAGCAGGAAAAAGTAGC	0.333													9	25					0	0	1	0	0
TOP2B	7155	broad.mit.edu	37	3	25674066	25674066	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:25674066G>A	uc011awn.1	-	10	1180	c.1137C>T	c.(1135-1137)AAC>AAT	p.N379N	TOP2B_uc003cdj.2_Silent_p.N374N	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	379					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						CCCATATATGGTTTTTTACCT	0.299													7	21					0	0	1	0	0
NGLY1	55768	broad.mit.edu	37	3	25775392	25775392	+	Nonsense_Mutation	SNP	G	A	A	rs146140738	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:25775392G>A	uc003cdl.2	-	8	1339	c.1231C>T	c.(1231-1233)CGA>TGA	p.R411*	NGLY1_uc010hfg.2_Nonsense_Mutation_p.R393*|NGLY1_uc003cdm.2_Nonsense_Mutation_p.R411*|NGLY1_uc011awo.1_Nonsense_Mutation_p.R369*|NGLY1_uc003cdk.2_RNA	NM_018297	NP_060767	Q96IV0	NGLY1_HUMAN	N-glycanase 1 isoform 1	411					glycoprotein catabolic process	cytoplasm	metal ion binding|peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|protein binding			breast(1)	1						ATAGTGTCTCGAAGTAATGCT	0.358													21	88					0	0	1	0	0
OXSM	54995	broad.mit.edu	37	3	25832704	25832704	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:25832704C>T	uc003cdn.2	+	2	300	c.193C>T	c.(193-195)CGT>TGT	p.R65C	NGLY1_uc011awo.1_5'Flank|OXSM_uc011awp.1_5'UTR|OXSM_uc010hfh.2_Missense_Mutation_p.R65C	NM_017897	NP_060367	Q9NWU1	OXSM_HUMAN	3-oxoacyl-ACP synthase, mitochondrial isoform 1	65					acyl-CoA metabolic process|medium-chain fatty acid biosynthetic process|short-chain fatty acid biosynthetic process	mitochondrion	3-oxoacyl-[acyl-carrier-protein] synthase activity			ovary(1)|breast(1)	2						GGTTTGGGATCGTCTTATCGG	0.463													57	134					0	0	1	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751374	26751374	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:26751374C>T	uc003cdp.2	+	2	800	c.211C>T	c.(211-213)CTG>TTG	p.L71L	LRRC3B_uc003cdq.2_Silent_p.L71L	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	71	LRR 1.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						CTTACTGTATCTGGACTCCAA	0.403													16	49					0	0	1	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751819	26751819	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:26751819C>T	uc003cdp.2	+	2	1245	c.656C>T	c.(655-657)TCA>TTA	p.S219L	LRRC3B_uc003cdq.2_Missense_Mutation_p.S219L	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	219	Helical; (Potential).					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						ATGGTGATCTCATATGTGGTA	0.468													11	30					0	0	1	0	0
NEK10	152110	broad.mit.edu	37	3	27204092	27204092	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:27204092G>A	uc010hfk.2	-	10	1035	c.806C>T	c.(805-807)GCT>GTT	p.A269V	NEK10_uc003cds.1_Missense_Mutation_p.A354V|NEK10_uc010hfj.2_Intron			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	957							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						AGGCAGCAAAGCTGAAGAAAT	0.418													17	58					0	0	1	0	0
NEK10	152110	broad.mit.edu	37	3	27333047	27333047	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:27333047G>A	uc003cdt.1	-	18	1678	c.1404C>T	c.(1402-1404)TTC>TTT	p.F468F	NEK10_uc003cds.1_5'UTR	NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	468							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						CTATGTCAATGAAGATCTCAA	0.348													11	21					0	0	1	0	0
ZCWPW2	152098	broad.mit.edu	37	3	28476733	28476733	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:28476733C>T	uc003ceh.2	+	4	633	c.465C>T	c.(463-465)TTC>TTT	p.F155F	ZCWPW2_uc003cei.2_Silent_p.F155F|ZCWPW2_uc010hfo.2_5'UTR	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	155	PWWP.						zinc ion binding			ovary(2)	2						AGGCAACATTCGTTGGACATT	0.333													14	84					0	0	1	0	0
RBMS3	27303	broad.mit.edu	37	3	29628666	29628666	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:29628666G>A	uc003cel.2	+	4	599	c.369G>A	c.(367-369)AAG>AAA	p.K123K	RBMS3_uc003cek.2_Silent_p.K123K|RBMS3_uc010hfq.2_Silent_p.K123K|RBMS3_uc003cem.2_Silent_p.K122K|RBMS3_uc010hfr.2_Silent_p.K123K	NM_001003793	NP_001003793	Q6XE24	RBMS3_HUMAN	RNA binding motif, single stranded interacting	123	RRM 1.					cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)	1		Ovarian(412;0.0956)				CATCTCTCAAGGCAAATGGCG	0.333													5	81					0	0	1	0	0
GADL1	339896	broad.mit.edu	37	3	30827849	30827849	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:30827849C>T	uc003cep.2	-	13	1347	c.1300G>A	c.(1300-1302)GAA>AAA	p.E434K		NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	434					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	TCACTTACTTCCATCAGTAAC	0.299													25	47					0	0	1	0	0
GADL1	339896	broad.mit.edu	37	3	30885930	30885930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:30885930G>A	uc003cep.2	-	7	727	c.680C>T	c.(679-681)TCT>TTT	p.S227F	GADL1_uc003ceq.1_Missense_Mutation_p.S227F	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	227					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	CCCAAGAAAAGAGGCTGCCTT	0.433													52	152					0	0	1	0	0
OSBPL10	114884	broad.mit.edu	37	3	31710235	31710235	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:31710235G>A	uc003cev.2	-	11	2376	c.1995C>T	c.(1993-1995)TTC>TTT	p.F665F	OSBPL10_uc003ceu.1_Silent_p.F422F|OSBPL10_uc011axf.1_Silent_p.F601F	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	665					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		TGTTGTAGGTGAACTCTAAAG	0.458													50	101					0	0	1	0	0
OSBPL10	114884	broad.mit.edu	37	3	31712336	31712336	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:31712336C>T	uc003cev.2	-	10	2247	c.1866G>A	c.(1864-1866)GCG>GCA	p.A622A	OSBPL10_uc003ceu.1_Silent_p.A379A|OSBPL10_uc011axf.1_Silent_p.A558A	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	622					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		ATATCACTGTCGCTGAGTACC	0.547													44	98					0	0	1	0	0
OSBPL10	114884	broad.mit.edu	37	3	31712394	31712394	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:31712394G>A	uc003cev.2	-	10	2189	c.1808C>T	c.(1807-1809)CCG>CTG	p.P603L	OSBPL10_uc003ceu.1_Missense_Mutation_p.P360L|OSBPL10_uc011axf.1_Missense_Mutation_p.P539L	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	603					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		CTCCACCCACGGGATGGTGAG	0.567													7	86					0	0	1	0	0
OSBPL10	114884	broad.mit.edu	37	3	31743882	31743882	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:31743882G>A	uc003cev.2	-	8	1595	c.1214C>T	c.(1213-1215)TCA>TTA	p.S405L	OSBPL10_uc003ceu.1_Missense_Mutation_p.S162L|OSBPL10_uc011axf.1_Missense_Mutation_p.S341L	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	405					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		TTTGAGTTGTGAAATGAGATG	0.428													13	58					0	0	1	0	0
OSBPL10	114884	broad.mit.edu	37	3	31774775	31774775	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:31774775C>T	uc003cev.2	-	7	1450	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	OSBPL10_uc003ceu.1_Missense_Mutation_p.E114K|OSBPL10_uc011axf.1_Missense_Mutation_p.E293K	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	357					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		GAGGTTTGTTCGTCTTCAGCA	0.453													26	118					0	0	1	0	0
OSBPL10	114884	broad.mit.edu	37	3	31917963	31917963	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:31917963G>A	uc003cev.2	-	4	880	c.499C>T	c.(499-501)CGA>TGA	p.R167*	OSBPL10_uc011axf.1_Nonsense_Mutation_p.R167*	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	167	PH.				lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		GCACAAGCTCGAAGCTGAGTC	0.418													21	45					0	0	1	0	0
ZNF860	344787	broad.mit.edu	37	3	32030581	32030581	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:32030581G>A	uc011axg.1	+	2	559	c.10G>A	c.(10-12)GAG>AAG	p.E4K		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CATGTTACGTGAGGAAGCAGC	0.408													29	88					0	0	1	0	0
ZNF860	344787	broad.mit.edu	37	3	32031756	32031756	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:32031756G>A	uc011axg.1	+	2	1734	c.1185G>A	c.(1183-1185)GGG>GGA	p.G395G		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	395					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATGGTATAGGGAAACTTTATA	0.373													18	78					0	0	1	0	0
ZNF860	344787	broad.mit.edu	37	3	32031883	32031883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:32031883C>T	uc011axg.1	+	2	1861	c.1312C>T	c.(1312-1314)CGT>TGT	p.R438C		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	438	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTTTAGACGTCGTTCATATCT	0.378													18	68					0	0	1	0	0
ZNF860	344787	broad.mit.edu	37	3	32031894	32031894	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:32031894C>T	uc011axg.1	+	2	1872	c.1323C>T	c.(1321-1323)CTC>CTT	p.L441L		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	441	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GTTCATATCTCGTAGTTCATT	0.378													28	57					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32927476	32927476	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:32927476G>A	uc003cff.2	+	3	1134	c.1071G>A	c.(1069-1071)GCG>GCA	p.A357A		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	357					multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						AGATGAAGGCGAAGGTTGTGC	0.552													31	57					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32932943	32932943	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:32932943C>T	uc003cff.2	+	4	2310	c.2247C>T	c.(2245-2247)TCC>TCT	p.S749S		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	749	NHL 4.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						ACTTTGACTCCCCACGGGGTG	0.577													8	54					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32933287	32933287	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:32933287G>A	uc003cff.2	+	4	2654	c.2591G>A	c.(2590-2592)CGA>CAA	p.R864Q		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	864	NHL 6.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						GGCAACAATCGAATCCTCGTC	0.433													17	161					0	0	1	0	0
GLB1	2720	broad.mit.edu	37	3	33093395	33093395	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:33093395G>A	uc003cfi.1	-	8	1011	c.894C>T	c.(892-894)GCC>GCT	p.A298A	GLB1_uc003cfh.1_Silent_p.A268A|GLB1_uc003cfj.1_Silent_p.A167A|GLB1_uc011axk.1_Silent_p.A346A	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	298					carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				TCGCCCCACGGGCAAGTATAT	0.512													21	65					0	0	1	0	0
GLB1	2720	broad.mit.edu	37	3	33114106	33114106	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:33114106G>A	uc003cfi.1	-	2	292	c.175C>T	c.(175-177)CGT>TGT	p.R59C	GLB1_uc003cfh.1_Missense_Mutation_p.R29C|GLB1_uc003cfj.1_Missense_Mutation_p.R59C|GLB1_uc011axk.1_Missense_Mutation_p.R107C	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	59			R -> H (in GM1G1; with cardiac involvement in some patients; protein enzymatically inactive; severe mutation).|R -> C (in GM1G1; protein enzymatically inactive; severe mutation).		carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				CGGGGCACACGGGAGTAGTGA	0.542													19	69					0	0	1	0	0
TMPPE	643853	broad.mit.edu	37	3	33134649	33134649	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:33134649G>A	uc003cfk.2	-	2	1230	c.1039C>T	c.(1039-1041)CAT>TAT	p.H347Y	GLB1_uc003cfh.1_Intron|GLB1_uc003cfi.1_Intron|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Intron|TMPPE_uc011axl.1_Missense_Mutation_p.H210Y	NM_001039770	NP_001034859	Q6ZT21	TMPPE_HUMAN	transmembrane protein with	347				H -> R (in Ref. 1; BAC87349).		integral to membrane	metal ion binding				0						TCCATGCCATGGCCAGAGTAG	0.592													39	131					0	0	1	0	0
TMPPE	643853	broad.mit.edu	37	3	33134930	33134930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:33134930G>A	uc003cfk.2	-	2	949	c.758C>T	c.(757-759)TCG>TTG	p.S253L	GLB1_uc003cfh.1_Intron|GLB1_uc003cfi.1_Intron|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Intron|TMPPE_uc011axl.1_Missense_Mutation_p.S116L	NM_001039770	NP_001034859	Q6ZT21	TMPPE_HUMAN	transmembrane protein with	253						integral to membrane	metal ion binding				0						CCGCAGGACCGAGGCTTCTGA	0.547													24	97					0	0	1	0	0
SUSD5	26032	broad.mit.edu	37	3	33249379	33249379	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:33249379G>A	uc003cfo.1	-	3	748	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_015551	NP_056366	O60279	SUSD5_HUMAN	sushi domain containing 5 precursor	110	Extracellular (Potential).|Link.				cell adhesion	integral to membrane	hyaluronic acid binding			ovary(1)|central_nervous_system(1)	2						CAGCTCTCATGATTTGCTGTT	0.418													30	71					0	0	1	0	0
CLASP2	23122	broad.mit.edu	37	3	33644589	33644589	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:33644589G>A	uc003cfu.2	-	18	2133	c.1779C>T	c.(1777-1779)TCC>TCT	p.S593S	CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc003cfv.2_Silent_p.S366S|CLASP2_uc011axu.1_Silent_p.S370S|CLASP2_uc003cfw.2_Silent_p.S366S|CLASP2_uc011axt.1_Silent_p.S168S	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	594										ovary(3)|central_nervous_system(1)	4						TTCCTGGAAGGGAACTGGCTT	0.453													5	7					0	0	1	0	0
PDCD6IP	10015	broad.mit.edu	37	3	33877622	33877622	+	Silent	SNP	C	G	G	rs143026467		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:33877622C>G	uc003cfx.2	+	8	1076	c.921C>G	c.(919-921)GCC>GCG	p.A307A	PDCD6IP_uc003cfy.2_Silent_p.A312A|PDCD6IP_uc011axw.1_Silent_p.A88A	NM_013374	NP_037506	Q8WUM4	PDC6I_HUMAN	programmed cell death 6 interacting protein	307	Interaction with EIAV p9.|Interaction with CHMP4A, CHMP4B and CHMP4C.|BRO1.				apoptosis|cell cycle|cell division|interspecies interaction between organisms|protein transport	cytosol|melanosome|microtubule organizing center	calcium-dependent protein binding			ovary(1)|skin(1)	2						TCAATCGTGCCCTTGCTGCAG	0.373													63	145					0	0	1	0	0
PDCD6IP	10015	broad.mit.edu	37	3	33894000	33894000	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:33894000C>T	uc003cfx.2	+	13	1817	c.1662C>T	c.(1660-1662)TCC>TCT	p.S554S	PDCD6IP_uc003cfy.2_Silent_p.S559S|PDCD6IP_uc011axw.1_Silent_p.S335S	NM_013374	NP_037506	Q8WUM4	PDC6I_HUMAN	programmed cell death 6 interacting protein	554	Interaction with EIAV p9.|Self-association.				apoptosis|cell cycle|cell division|interspecies interaction between organisms|protein transport	cytosol|melanosome|microtubule organizing center	calcium-dependent protein binding			ovary(1)|skin(1)	2						TCTTAAAATCCTTATTGTCAA	0.303													5	45					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35763096	35763096	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:35763096G>A	uc003cgb.2	+	14	1260	c.996_splice	c.e14-1	p.R332_splice	ARPP21_uc003cga.2_Splice_Site_p.R278_splice|ARPP21_uc011axy.1_Splice_Site_p.R298_splice|ARPP21_uc003cgf.2_Splice_Site_p.R133_splice|ARPP21_uc003cgg.2_5'Flank	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD							cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TCGTACTCCAGGGGCAACAGA	0.527													5	22					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35778739	35778739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:35778739G>A	uc003cgb.2	+	16	1793	c.1529G>A	c.(1528-1530)CGA>CAA	p.R510Q	ARPP21_uc003cga.2_Missense_Mutation_p.R456Q|ARPP21_uc011axy.1_Missense_Mutation_p.R476Q|ARPP21_uc003cgf.2_Missense_Mutation_p.R311Q|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	510	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						CAGCCCCTGCGAAGCGCCATG	0.612													68	70					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35781030	35781030	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:35781030C>T	uc003cgb.2	+	17	2130	c.1866C>T	c.(1864-1866)CCC>CCT	p.P622P	ARPP21_uc003cga.2_Silent_p.P603P|ARPP21_uc011axy.1_Silent_p.P623P|ARPP21_uc003cgf.2_Silent_p.P458P|ARPP21_uc003cgg.2_Silent_p.P145P	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	622	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AGCCCCCTCCCTCACCACAGG	0.562													23	49					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35833903	35833903	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:35833903G>A	uc003cgb.2	+	19	2326	c.2062G>A	c.(2062-2064)GGA>AGA	p.G688R	ARPP21_uc003cga.2_Missense_Mutation_p.G669R|ARPP21_uc011axy.1_Missense_Mutation_p.G689R|ARPP21_uc003cgf.2_Missense_Mutation_p.G524R|ARPP21_uc003cgg.2_Missense_Mutation_p.G211R	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	688	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TGGTCAACAGGGATTCCAAGG	0.468													72	184					0	0	1	0	0
STAC	6769	broad.mit.edu	37	3	36524562	36524562	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36524562C>T	uc003cgh.1	+	3	506	c.467C>T	c.(466-468)CCC>CTC	p.P156L	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Intron	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	156	Phorbol-ester/DAG-type.				intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						GGCCTGGCACCCCAGCGGTGC	0.572													9	57					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36759506	36759506	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36759506G>A	uc003cgi.2	-	4	2239	c.1748C>T	c.(1747-1749)TCT>TTT	p.S583F		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	583	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CTCACCATCAGAGATATTGTC	0.552													64	134					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36759570	36759570	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36759570C>T	uc003cgi.2	-	4	2175	c.1684G>A	c.(1684-1686)GAG>AAG	p.E562K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	562	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TTAAAGAGCTCGTCCTGGTCC	0.552													32	225					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36778713	36778713	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36778713G>A	uc003cgi.2	-	2	1929	c.1438C>T	c.(1438-1440)CCG>TCG	p.P480S		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	480	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						AGGTTTTCCGGCTTGAGGTCC	0.453													12	41					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36778896	36778896	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36778896C>T	uc003cgi.2	-	2	1746	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	419	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TCGTAGACTTCATGCAATTTC	0.493													15	59					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36779911	36779912	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36779911_36779912GG>AA	uc003cgi.2	-	2	730_731	c.239_240CC>TT	c.(238-240)CCC>CTT	p.P80L		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	80						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						AAAGCTCCTCGGGGATCTTCCC	0.614													73	174					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36780080	36780080	+	Missense_Mutation	SNP	C	T	T	rs56070233	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36780080C>T	uc003cgi.2	-	2	562	c.71G>A	c.(70-72)CGG>CAG	p.R24Q		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	24						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TGTCAGGGCCCGGGCTTTGTT	0.567													48	132					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36869813	36869813	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36869813G>A	uc003cgj.2	-	14	7383	c.7081C>T	c.(7081-7083)CGG>TGG	p.R2361W		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2911					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTTCTAGGCCGAAGCTCACCA	0.343													10	20					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36872640	36872640	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36872640C>T	uc003cgj.2	-	12	6954	c.6652G>A	c.(6652-6654)GAG>AAG	p.E2218K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2768					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTGTTCCTCTCCTGACACTCC	0.537													44	84					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36872942	36872942	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36872942G>A	uc003cgj.2	-	12	6652	c.6350C>T	c.(6349-6351)TCC>TTC	p.S2117F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2667					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTGCTTTTGGGAAAGAATGGT	0.542													4	14					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36873041	36873041	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36873041G>A	uc003cgj.2	-	12	6553	c.6251C>T	c.(6250-6252)CCT>CTT	p.P2084L		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2634					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GTAGTCCACAGGGTCCAAACA	0.542													5	11					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36873264	36873265	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36873264_36873265GG>AA	uc003cgj.2	-	12	6329_6330	c.6027_6028CC>TT	c.(6025-6030)TGCCCT>TGTTCT	p.P2010S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2560					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ACCTGGCCAGGGCAGTCCATGC	0.569													26	71					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36873661	36873661	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36873661C>T	uc003cgj.2	-	12	5933	c.5631G>A	c.(5629-5631)TGG>TGA	p.W1877*		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2427					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TGACATTCTTCCAGAGGCGGG	0.522													36	100					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36873950	36873950	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36873950C>T	uc003cgj.2	-	12	5644	c.5342G>A	c.(5341-5343)GGG>GAG	p.G1781E		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2331					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GCTGCCTCTCCCCCTGCCCCT	0.502													52	111					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36874038	36874038	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36874038C>T	uc003cgj.2	-	12	5556	c.5254G>A	c.(5254-5256)GAG>AAG	p.E1752K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2302	Potential.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTTTCAAACTCCTCCGGGTAG	0.527													27	59					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36874097	36874097	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36874097G>A	uc003cgj.2	-	12	5497	c.5195C>T	c.(5194-5196)TCC>TTC	p.S1732F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2282					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CAGGTCTGTGGATTCCCGGCG	0.483													19	42					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36874347	36874348	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36874347_36874348GG>AA	uc003cgj.2	-	12	5246_5247	c.4944_4945CC>TT	c.(4942-4947)TTCCCT>TTTTCT	p.P1649S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2199					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AAGATTTTAGGGAATACTTTTT	0.401													18	43					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36875124	36875124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36875124C>T	uc003cgj.2	-	12	4470	c.4168G>A	c.(4168-4170)GAC>AAC	p.D1390N		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1940					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AAGTCCTTGTCGGCAGTGAGC	0.587													10	27					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36884182	36884182	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36884182G>A	uc003cgj.2	-	8	3731	c.3429C>T	c.(3427-3429)TTC>TTT	p.F1143F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1693					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AGGTCTTAACGAACATGCTAT	0.408													28	12					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36888828	36888828	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36888828C>T	uc003cgj.2	-	6	3417	c.3115G>A	c.(3115-3117)GAA>AAA	p.E1039K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1589					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ATCTTCCATTCCTTATAAGCC	0.443													6	28					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36893237	36893237	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36893237G>A	uc003cgj.2	-	5	3380	c.3078C>T	c.(3076-3078)CTC>CTT	p.L1026L		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1576					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AGTTGTAAAGGAGGACATCAT	0.383													6	24					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36893670	36893670	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36893670C>T	uc003cgj.2	-	4	3236	c.2934G>A	c.(2932-2934)AGG>AGA	p.R978R		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1528					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GCTGAGTTTTCCTTTTATTCC	0.428													21	48					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36897018	36897018	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36897018G>A	uc003cgj.2	-	3	2715	c.2413C>T	c.(2413-2415)CAG>TAG	p.Q805*		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1355					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTGATTTGCTGATACAGACTG	0.473													36	122					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36897082	36897082	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36897082C>T	uc003cgj.2	-	3	2651	c.2349G>A	c.(2347-2349)GGG>GGA	p.G783G		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1333					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ACCGTTTCCTCCCTAATTTCT	0.428													43	110					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36897586	36897586	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36897586G>A	uc003cgj.2	-	3	2147	c.1845C>T	c.(1843-1845)TTC>TTT	p.F615F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1165					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AAAGCTCAATGAAATTCCTTT	0.483													54	117					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36898704	36898704	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36898704C>T	uc003cgj.2	-	3	1029	c.727G>A	c.(727-729)GAG>AAG	p.E243K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	793					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GAAGTGCACTCGATCTCCCAG	0.493													105	268					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36898763	36898763	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36898763C>T	uc003cgj.2	-	3	970	c.668G>A	c.(667-669)TGG>TAG	p.W223*		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	773					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTGCGTGCTCCAGTCATCCTG	0.542													76	297					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36898953	36898953	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36898953G>A	uc003cgj.2	-	3	780	c.478C>T	c.(478-480)CTT>TTT	p.L160F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	710					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GAGCTCTGAAGACAGTCCTCT	0.557													18	50					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36899114	36899114	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:36899114C>T	uc003cgj.2	-	3	619	c.317G>A	c.(316-318)GGA>GAA	p.G106E		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	656					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GACTGCACTTCCTTCAGGCAG	0.582													17	67					0	0	1	0	0
MLH1	4292	broad.mit.edu	37	3	37067192	37067192	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37067192C>T	uc003cgl.2	+	12	1163	c.1103C>T	c.(1102-1104)TCG>TTG	p.S368L	MLH1_uc011aye.1_Missense_Mutation_p.S127L|MLH1_uc011ayb.1_Missense_Mutation_p.S127L|MLH1_uc010hge.2_Missense_Mutation_p.S368L|MLH1_uc003cgn.3_Missense_Mutation_p.S127L|MLH1_uc011ayc.1_Missense_Mutation_p.S270L|MLH1_uc011ayd.1_Missense_Mutation_p.S127L|MLH1_uc003cgo.2_Missense_Mutation_p.S127L|MLH1_uc010hgg.1_Missense_Mutation_p.S27L|MLH1_uc010hgh.1_Missense_Mutation_p.S27L|MLH1_uc010hgi.1_Missense_Mutation_p.S10L|MLH1_uc010hgj.1_Missense_Mutation_p.S10L|MLH1_uc010hgk.2_Missense_Mutation_p.S10L|MLH1_uc010hgl.1_Intron|MLH1_uc010hgn.2_Missense_Mutation_p.S10L|MLH1_uc010hgm.2_RNA|MLH1_uc010hgo.2_Missense_Mutation_p.S10L	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	368					mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						AGTCTGACCTCGTCTTCTACT	0.423		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				43	68					0	0	1	0	0
GOLGA4	2803	broad.mit.edu	37	3	37323488	37323488	+	Missense_Mutation	SNP	C	T	T	rs140013994		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37323488C>T	uc003cgv.2	+	3	506	c.202C>T	c.(202-204)CGG>TGG	p.R68W	GOLGA4_uc010hgr.1_Intron|GOLGA4_uc003cgw.2_Missense_Mutation_p.R90W|GOLGA4_uc010hgs.2_Missense_Mutation_p.R68W|GOLGA4_uc003cgx.2_5'Flank|GOLGA4_uc003cgu.1_Missense_Mutation_p.R90W	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	68					Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						GCTCCAGCTCCGGGTGCCCTC	0.443													14	117					0	0	1	0	0
GOLGA4	2803	broad.mit.edu	37	3	37363342	37363342	+	Missense_Mutation	SNP	C	T	T	rs113898889		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37363342C>T	uc003cgv.2	+	13	1970	c.1666C>T	c.(1666-1668)CGG>TGG	p.R556W	GOLGA4_uc010hgr.1_Missense_Mutation_p.R117W|GOLGA4_uc003cgw.2_Missense_Mutation_p.R578W|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Missense_Mutation_p.R437W	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	556	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						AAATAAACTTCGGGACCTTCA	0.348													33	60					0	0	1	0	0
GOLGA4	2803	broad.mit.edu	37	3	37388776	37388776	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37388776C>T	uc003cgv.2	+	21	6869	c.6565C>T	c.(6565-6567)CGT>TGT	p.R2189C	GOLGA4_uc003cgw.2_Missense_Mutation_p.R2204C|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Missense_Mutation_p.R2070C	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	2189	GRIP.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						TATGATGGGTCGTGAGACTAA	0.368													11	96					0	0	1	0	0
ITGA9	3680	broad.mit.edu	37	3	37514853	37514853	+	Missense_Mutation	SNP	C	T	T	rs143674262		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37514853C>T	uc003chd.2	+	3	375	c.322C>T	c.(322-324)CGG>TGG	p.R108W	ITGA9_uc003chc.2_Missense_Mutation_p.R108W	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	108	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		AGGGAAGAATCGGGGCACGTC	0.567													8	45					0	0	1	0	0
ITGA9	3680	broad.mit.edu	37	3	37514875	37514875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37514875C>T	uc003chd.2	+	3	397	c.344C>T	c.(343-345)ACC>ATC	p.T115I	ITGA9_uc003chc.2_Missense_Mutation_p.T115I	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	115	Extracellular (Potential).|FG-GAP 2.				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		TGCGGAAAGACCTGCCGGGAA	0.602													11	48					0	0	1	0	0
ITGA9	3680	broad.mit.edu	37	3	37670762	37670762	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37670762G>A	uc003chd.2	+	16	1827	c.1774G>A	c.(1774-1776)GAA>AAA	p.E592K	ITGA9_uc003chc.2_Missense_Mutation_p.E592K	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	592	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		GGAGGAGAGGGAACTGCCGCC	0.517													11	31					0	0	1	0	0
ITGA9	3680	broad.mit.edu	37	3	37670821	37670821	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37670821G>A	uc003chd.2	+	16	1886	c.1833G>A	c.(1831-1833)AAG>AAA	p.K611K	ITGA9_uc003chc.2_Silent_p.K611K	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	611	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		TTGCCCAAAAGAATCAGGTCA	0.532													8	24					0	0	1	0	0
ITGA9	3680	broad.mit.edu	37	3	37725431	37725431	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37725431C>T	uc003chd.2	+	18	2045	c.1992C>T	c.(1990-1992)CTC>CTT	p.L664L		NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	664	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		TCTCCAACCTCGGAGATGATG	0.458													20	31					0	0	1	0	0
ITGA9	3680	broad.mit.edu	37	3	37725472	37725472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37725472C>T	uc003chd.2	+	18	2086	c.2033C>T	c.(2032-2034)TCC>TTC	p.S678F		NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	678	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		TTCAATGTTTCCCGGGAGCTC	0.473													16	38					0	0	1	0	0
ITGA9	3680	broad.mit.edu	37	3	37774261	37774261	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:37774261G>A	uc003chd.2	+	19	2179	c.2126G>A	c.(2125-2127)GGA>GAA	p.G709E		NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	709	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		TGCAGCGTGGGATTTCCTTTC	0.562													3	17					0	0	1	0	0
VILL	50853	broad.mit.edu	37	3	38045833	38045833	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38045833C>T	uc003chj.2	+	16	2179	c.1893C>T	c.(1891-1893)TTC>TTT	p.F631F	VILL_uc003chl.2_Silent_p.F631F	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	631	Gelsolin-like 6.				actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		AAGTGGGGTTCTTCAGCCAGG	0.622											OREG0015475	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	44					0	0	1	0	0
DLEC1	9940	broad.mit.edu	37	3	38103775	38103775	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38103775C>T	uc003cho.1	+	4	810	c.789C>T	c.(787-789)TTC>TTT	p.F263F	DLEC1_uc003chp.1_Silent_p.F263F|DLEC1_uc010hgv.1_Silent_p.F263F|DLEC1_uc010hgw.1_5'Flank|DLEC1_uc003chq.1_5'Flank	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	263					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		TTGCTGAGTTCGAAGATGAGT	0.453													26	67					0	0	1	0	0
DLEC1	9940	broad.mit.edu	37	3	38139114	38139114	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38139114G>A	uc003cho.1	+	17	2572	c.2551G>A	c.(2551-2553)GAG>AAG	p.E851K	DLEC1_uc003chp.1_Missense_Mutation_p.E851K|DLEC1_uc010hgv.1_Missense_Mutation_p.E851K|DLEC1_uc003chr.1_5'UTR|DLEC1_uc010hgx.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	851					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		GTTACACATTGAGGCTGTCTT	0.602													23	31					0	0	1	0	0
DLEC1	9940	broad.mit.edu	37	3	38141867	38141867	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38141867C>T	uc003cho.1	+	19	2836	c.2815C>T	c.(2815-2817)CAG>TAG	p.Q939*	DLEC1_uc003chp.1_Nonsense_Mutation_p.Q939*|DLEC1_uc010hgv.1_Nonsense_Mutation_p.Q939*|DLEC1_uc003chr.1_Nonsense_Mutation_p.Q45*|DLEC1_uc010hgx.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	939					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		CCTGCACTGCCAGCATCTGGA	0.582													36	85					0	0	1	0	0
OXSR1	9943	broad.mit.edu	37	3	38266165	38266165	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38266165C>T	uc003chy.2	+	8	1148	c.806C>T	c.(805-807)TCA>TTA	p.S269L	OXSR1_uc010hhb.2_Missense_Mutation_p.S203L|OXSR1_uc010hha.1_Missense_Mutation_p.S201L	NM_005109	NP_005100	O95747	OXSR1_HUMAN	oxidative-stress responsive 1	269	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		AAAATGATTTCATTGTGCCTT	0.313													13	40					0	0	1	0	0
SLC22A13	9390	broad.mit.edu	37	3	38307601	38307601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38307601C>T	uc003chz.3	+	1	304	c.250C>T	c.(250-252)CTC>TTC	p.L84F	SLC22A13_uc011aym.1_RNA|SLC22A13_uc011ayn.1_Missense_Mutation_p.L84F	NM_004256	NP_004247	Q9Y226	S22AD_HUMAN	solute carrier family 22 (organic anion	84	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0533)|Kidney(284;0.067)		AGAGCCCTGCCTCATGTTCCG	0.592													5	36					0	0	1	0	0
SLC22A13	9390	broad.mit.edu	37	3	38317409	38317410	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38317409_38317410CC>TT	uc003chz.3	+	7	1113_1114	c.1059_1060CC>TT	c.(1057-1062)CTCCAA>CTTTAA	p.Q354*	SLC22A13_uc011aym.1_RNA|SLC22A13_uc011ayn.1_Nonsense_Mutation_p.Q354*	NM_004256	NP_004247	Q9Y226	S22AD_HUMAN	solute carrier family 22 (organic anion	354	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0533)|Kidney(284;0.067)		GCCTGAGCCTCCAAGTGGGGGA	0.569													19	49					0	0	1	0	0
SLC22A14	9389	broad.mit.edu	37	3	38357818	38357818	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38357818G>A	uc010hhc.1	+	10	1578	c.1536G>A	c.(1534-1536)GCG>GCA	p.A512A	SLC22A14_uc003cib.2_Silent_p.A512A|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	512	Cytoplasmic (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		CTTTCAGGGCGACAGGTCTGG	0.612													17	59					0	0	1	0	0
SLC22A14	9389	broad.mit.edu	37	3	38357943	38357943	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38357943C>T	uc010hhc.1	+	10	1703	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F	SLC22A14_uc003cib.2_Missense_Mutation_p.S554F|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	554	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		GTGGCCTTTTCCCTCTCCTCC	0.612													17	37					0	0	1	0	0
ACVR2B	93	broad.mit.edu	37	3	38520723	38520723	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38520723C>T	uc003cif.2	+	6	795	c.771C>T	c.(769-771)CTC>CTT	p.L257L	ACVR2B_uc003cig.2_Silent_p.L48L	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	257	Cytoplasmic (Potential).|Protein kinase.				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		GCTCCAACCTCGAAGTAGAGC	0.557													62	144					0	0	1	0	0
EXOG	9941	broad.mit.edu	37	3	38539158	38539158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38539158C>T	uc003cih.2	+	2	298	c.202C>T	c.(202-204)CCT>TCT	p.P68S	EXOG_uc010hhg.2_RNA|EXOG_uc011ayq.1_Intron|EXOG_uc003cij.2_5'UTR|EXOG_uc010hhd.2_5'UTR|EXOG_uc010hhe.2_5'UTR|EXOG_uc003cik.2_5'UTR|EXOG_uc010hhf.2_5'UTR|EXOG_uc003cii.2_5'UTR	NM_005107	NP_005098	Q9Y2C4	EXOG_HUMAN	endo/exonuclease (5'-3'), endonuclease G-like	68						mitochondrial inner membrane	endonuclease activity|metal ion binding|nucleic acid binding				0						ATTTGGATTCCCTTTAACTGG	0.393													31	61					0	0	1	0	0
EXOG	9941	broad.mit.edu	37	3	38565541	38565541	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38565541C>T	uc003cih.2	+	6	891	c.795C>T	c.(793-795)TTC>TTT	p.F265F	EXOG_uc010hhg.2_RNA|EXOG_uc011ayq.1_Silent_p.F215F|EXOG_uc003cij.2_Silent_p.F125F|EXOG_uc010hhd.2_Silent_p.F125F|EXOG_uc010hhe.2_Silent_p.F125F|EXOG_uc003cik.2_Silent_p.F125F|EXOG_uc010hhf.2_Silent_p.F125F|EXOG_uc003cii.2_Silent_p.F125F	NM_005107	NP_005098	Q9Y2C4	EXOG_HUMAN	endo/exonuclease (5'-3'), endonuclease G-like	265						mitochondrial inner membrane	endonuclease activity|metal ion binding|nucleic acid binding				0						TAACTGAATTCCAAGTGAGCC	0.512													24	111					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38591833	38591833	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38591833C>T	uc003cio.2	-	28	6224	c.6030G>A	c.(6028-6030)AGG>AGA	p.R2010R	SCN5A_uc003cin.2_Silent_p.R2009R|SCN5A_uc003cil.3_Silent_p.R2010R|SCN5A_uc010hhi.2_Silent_p.R1992R|SCN5A_uc010hhk.2_Silent_p.R1977R|SCN5A_uc011ayr.1_Silent_p.R1956R	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	2010					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ACTCACGGTCCCTGTCCGGAG	0.567													39	88					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38592720	38592720	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38592720C>T	uc003cio.2	-	28	5337	c.5143G>A	c.(5143-5145)GGC>AGC	p.G1715S	SCN5A_uc003cin.2_Missense_Mutation_p.G1714S|SCN5A_uc003cil.3_Missense_Mutation_p.G1715S|SCN5A_uc010hhi.2_Missense_Mutation_p.G1697S|SCN5A_uc010hhk.2_Missense_Mutation_p.G1682S|SCN5A_uc011ayr.1_Missense_Mutation_p.G1661S	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1715					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CTGAGGAGGCCATCCCAGCCG	0.642													38	108					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38592977	38592977	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38592977C>T	uc003cio.2	-	28	5080	c.4886G>A	c.(4885-4887)CGA>CAA	p.R1629Q	SCN5A_uc003cin.2_Missense_Mutation_p.R1628Q|SCN5A_uc003cil.3_Missense_Mutation_p.R1629Q|SCN5A_uc010hhi.2_Missense_Mutation_p.R1611Q|SCN5A_uc010hhk.2_Missense_Mutation_p.R1596Q|SCN5A_uc011ayr.1_Missense_Mutation_p.R1575Q	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1629	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GCGGCCTATTCGGGCCAGGCG	0.592													42	94					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38593037	38593037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38593037G>A	uc003cio.2	-	28	5020	c.4826C>T	c.(4825-4827)TCG>TTG	p.S1609L	SCN5A_uc003cin.2_Missense_Mutation_p.S1608L|SCN5A_uc003cil.3_Missense_Mutation_p.S1609L|SCN5A_uc010hhi.2_Missense_Mutation_p.S1591L|SCN5A_uc010hhk.2_Missense_Mutation_p.S1576L|SCN5A_uc011ayr.1_Missense_Mutation_p.S1555L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1609	Helical; Name=S3 of repeat IV; (Potential).		S -> W (in LQT3).		blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GATGATGTCCGAGAGCACAGT	0.617													24	76					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38596017	38596017	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38596017G>A	uc003cio.2	-	27	4760	c.4566C>T	c.(4564-4566)TTC>TTT	p.F1522F	SCN5A_uc003cin.2_Silent_p.F1521F|SCN5A_uc003cil.3_Silent_p.F1522F|SCN5A_uc010hhi.2_Silent_p.F1504F|SCN5A_uc010hhk.2_Silent_p.F1521F|SCN5A_uc011ayr.1_Silent_p.F1468F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1522					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TCACAATGTCGAATATGAAGC	0.502													44	85					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38607954	38607954	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38607954G>A	uc003cio.2	-	21	3980	c.3786C>T	c.(3784-3786)GGC>GGT	p.G1262G	SCN5A_uc003cin.2_Silent_p.G1261G|SCN5A_uc003cil.3_Silent_p.G1262G|SCN5A_uc010hhi.2_Silent_p.G1262G|SCN5A_uc010hhk.2_Silent_p.G1261G|SCN5A_uc011ayr.1_Silent_p.G1208G|SCN5A_uc010hhj.1_Silent_p.G872G	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1262	Helical; Name=S2 of repeat III; (Potential).		G -> S (in BRS1).		blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ACTTCTTGAAGCCGTAGGCCA	0.532													14	138					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38616851	38616851	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38616851G>A	uc003cio.2	-	20	3797	c.3603C>T	c.(3601-3603)ATC>ATT	p.I1201I	SCN5A_uc003cin.2_Silent_p.I1200I|SCN5A_uc003cil.3_Silent_p.I1201I|SCN5A_uc010hhi.2_Silent_p.I1201I|SCN5A_uc010hhk.2_Silent_p.I1200I|SCN5A_uc011ayr.1_Silent_p.I1147I|SCN5A_uc010hhj.1_Silent_p.I811I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1201	Helical; Name=S1 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGTGCTCCACGATGTGGTAGC	0.617													9	16					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38620858	38620858	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38620858C>T	uc003cio.2	-	18	3551	c.3357G>A	c.(3355-3357)TGG>TGA	p.W1119*	SCN5A_uc003cin.2_Nonsense_Mutation_p.W1118*|SCN5A_uc003cil.3_Nonsense_Mutation_p.W1119*|SCN5A_uc010hhi.2_Nonsense_Mutation_p.W1119*|SCN5A_uc010hhk.2_Nonsense_Mutation_p.W1118*|SCN5A_uc011ayr.1_Intron|SCN5A_uc010hhj.1_Nonsense_Mutation_p.W729*	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1119					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GTTCCGCTTTCCACTGCTGCC	0.662													3	12					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38622674	38622675	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38622674_38622675GG>AA	uc003cio.2	-	17	3169_3170	c.2975_2976CC>TT	c.(2974-2976)CCC>CTT	p.P992L	SCN5A_uc003cin.2_Missense_Mutation_p.P992L|SCN5A_uc003cil.3_Missense_Mutation_p.P992L|SCN5A_uc010hhi.2_Missense_Mutation_p.P992L|SCN5A_uc010hhk.2_Missense_Mutation_p.P992L|SCN5A_uc011ayr.1_Missense_Mutation_p.P992L|SCN5A_uc010hhj.1_Missense_Mutation_p.P603L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	992					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CAAGGGCTGCGGGCTTCTGAGG	0.688													6	14					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38627445	38627445	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38627445G>A	uc003cio.2	-	16	2718	c.2524C>T	c.(2524-2526)CTG>TTG	p.L842L	SCN5A_uc003cin.2_Silent_p.L842L|SCN5A_uc003cil.3_Silent_p.L842L|SCN5A_uc010hhi.2_Silent_p.L842L|SCN5A_uc010hhk.2_Silent_p.L842L|SCN5A_uc011ayr.1_Silent_p.L842L|SCN5A_uc010hhj.1_Silent_p.L453L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	842	Helical; Name=S5 of repeat II; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ACCAGTGTCAGGTTCCCCAGT	0.572													30	63					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38639232	38639232	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38639232C>T	uc003cio.2	-	14	2444	c.2250G>A	c.(2248-2250)CAG>CAA	p.Q750Q	SCN5A_uc003cin.2_Silent_p.Q750Q|SCN5A_uc003cil.3_Silent_p.Q750Q|SCN5A_uc010hhi.2_Silent_p.Q750Q|SCN5A_uc010hhk.2_Silent_p.Q750Q|SCN5A_uc011ayr.1_Silent_p.Q750Q|SCN5A_uc010hhj.1_Silent_p.Q361Q	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	750	Helical; Name=S2 of repeat II; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGTTTCCGACCTGCAGCATCT	0.552													13	46					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38646255	38646255	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38646255G>A	uc003cio.2	-	11	1677	c.1483C>T	c.(1483-1485)CCC>TCC	p.P495S	SCN5A_uc003cin.2_Missense_Mutation_p.P495S|SCN5A_uc003cil.3_Missense_Mutation_p.P495S|SCN5A_uc010hhi.2_Missense_Mutation_p.P495S|SCN5A_uc010hhk.2_Missense_Mutation_p.P495S|SCN5A_uc011ayr.1_Missense_Mutation_p.P495S|SCN5A_uc010hhj.1_Missense_Mutation_p.P106S	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	495					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TCAGACTTGGGGAGCCTGTCC	0.527													15	30					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38646287	38646287	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38646287G>A	uc003cio.2	-	11	1645	c.1451C>T	c.(1450-1452)TCA>TTA	p.S484L	SCN5A_uc003cin.2_Missense_Mutation_p.S484L|SCN5A_uc003cil.3_Missense_Mutation_p.S484L|SCN5A_uc010hhi.2_Missense_Mutation_p.S484L|SCN5A_uc010hhk.2_Missense_Mutation_p.S484L|SCN5A_uc011ayr.1_Missense_Mutation_p.S484L|SCN5A_uc010hhj.1_Missense_Mutation_p.S95L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	484					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CTCAGTTCCTGAAGACATCCG	0.542													8	42					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38646359	38646359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38646359G>A	uc003cio.2	-	11	1573	c.1379C>T	c.(1378-1380)TCC>TTC	p.S460F	SCN5A_uc003cin.2_Missense_Mutation_p.S460F|SCN5A_uc003cil.3_Missense_Mutation_p.S460F|SCN5A_uc010hhi.2_Missense_Mutation_p.S460F|SCN5A_uc010hhk.2_Missense_Mutation_p.S460F|SCN5A_uc011ayr.1_Missense_Mutation_p.S460F|SCN5A_uc010hhj.1_Missense_Mutation_p.S71F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	460					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CATCTCCAAGGAGCTACGGGA	0.547													9	22					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38647586	38647586	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38647586G>A	uc003cio.2	-	10	1388	c.1194C>T	c.(1192-1194)TTC>TTT	p.F398F	SCN5A_uc003cin.2_Silent_p.F398F|SCN5A_uc003cil.3_Silent_p.F398F|SCN5A_uc010hhi.2_Silent_p.F398F|SCN5A_uc010hhk.2_Silent_p.F398F|SCN5A_uc011ayr.1_Silent_p.F398F|SCN5A_uc010hhj.1_Silent_p.F9F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	398	Helical; Name=S6 of repeat I; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	AGGACCCCAGGAAGATGACAA	0.577													15	64					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38655274	38655274	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38655274G>A	uc003cio.2	-	6	857	c.663C>T	c.(661-663)TTC>TTT	p.F221F	SCN5A_uc003cin.2_Silent_p.F221F|SCN5A_uc003cil.3_Intron|SCN5A_uc010hhi.2_Intron|SCN5A_uc010hhk.2_Intron|SCN5A_uc011ayr.1_Intron|SCN5A_uc010hhl.1_Intron	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	221	Helical; Voltage-sensor; Name=S4 of repeat I; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGAGGACTCGGAAGGTGCGTA	0.483													7	18					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739037	38739037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38739037C>T	uc003ciq.2	-	27	5674	c.5674G>A	c.(5674-5676)GAA>AAA	p.E1892K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1892					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACAAAACCTTCATCTGGGAGT	0.502													53	94					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739233	38739233	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38739233C>T	uc003ciq.2	-	27	5478	c.5478G>A	c.(5476-5478)GAG>GAA	p.E1826E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1826					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TAAACTTCTCCTCCATATTTG	0.428													19	91					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739797	38739797	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38739797G>A	uc003ciq.2	-	27	4914	c.4914C>T	c.(4912-4914)ATC>ATT	p.I1638I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1638	IV.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACATGTCGTCGATGCCAGCCT	0.552													48	125					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38743485	38743485	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38743485C>T	uc003ciq.2	-	26	4502	c.4502G>A	c.(4501-4503)AGT>AAT	p.S1501N		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1501	IV.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CTTTTCTTCACTTTGGTCATC	0.448													30	70					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38748773	38748773	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38748773G>A	uc003ciq.2	-	25	4383	c.4383C>T	c.(4381-4383)CCC>CCT	p.P1461P		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1461					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGCTCACCAGGGGCCGTGGGA	0.547													27	72					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38753715	38753715	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38753715G>A	uc003ciq.2	-	22	4026	c.4026C>T	c.(4024-4026)TTC>TTT	p.F1342F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1342	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CATTGACCCAGAAGAAGCTGC	0.428													44	109					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38753835	38753835	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38753835G>A	uc003ciq.2	-	22	3906	c.3906C>T	c.(3904-3906)CTC>CTT	p.L1302L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1302	III.|Helical; Name=S5 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TCCCTGCGAAGAGGTTCACAC	0.493													30	154					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38753876	38753876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38753876G>A	uc003ciq.2	-	22	3865	c.3865C>T	c.(3865-3867)CTC>TTC	p.L1289F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1289	III.|Helical; Name=S5 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CAGAAGATGAGGCAGACGAGG	0.537													32	122					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38760200	38760200	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38760200C>T	uc003ciq.2	-	20	3625	c.3625G>A	c.(3625-3627)GGC>AGC	p.G1209S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1209	Helical; Name=S2 of repeat III; (Potential).|III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TTTTTGAAGCCATAGGCCACC	0.527													30	96					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38764987	38764987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38764987C>T	uc003ciq.2	-	18	3286	c.3286G>A	c.(3286-3288)GAA>AAA	p.E1096K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1096					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ctcaggatttcctcaggatct	0.507													11	31					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38765020	38765020	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38765020C>T	uc003ciq.2	-	18	3253	c.3253G>A	c.(3253-3255)GAG>AAG	p.E1085K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1085					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GTGCTGCCCTCAGAGGAGCTT	0.512													4	13					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38766682	38766682	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38766682G>A	uc003ciq.2	-	17	3211	c.3211C>T	c.(3211-3213)CCT>TCT	p.P1071S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1071					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGGACCTGAGGAACAGACTCA	0.607													21	42					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38768370	38768370	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38768370G>A	uc003ciq.2	-	16	2814	c.2814C>T	c.(2812-2814)TTC>TTT	p.F938F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	938					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGGGCTGGGGGAATGGGCAGG	0.602													27	83					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38770069	38770069	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38770069G>A	uc003ciq.2	-	15	2604	c.2604C>T	c.(2602-2604)ATC>ATT	p.I868I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	868	II.|Helical; Name=S6 of repeat II; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TCAAGAAAAGGATGAGGCATA	0.517													19	46					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38793802	38793802	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38793802G>A	uc003ciq.2	-	11	1663	c.1663C>T	c.(1663-1665)CCT>TCT	p.P555S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	555					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CTGGGTTGAGGAAGAGGGCTT	0.602													30	76					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38793807	38793807	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38793807G>A	uc003ciq.2	-	11	1658	c.1658C>T	c.(1657-1659)CCT>CTT	p.P553L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	553					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TTGAGGAAGAGGGCTTCTAGG	0.612													37	71					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38798333	38798333	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38798333C>T	uc003ciq.2	-	9	1122	c.1122G>A	c.(1120-1122)ATG>ATA	p.M374I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	374	Helical; Name=S6 of repeat I; (Potential).|I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CAAAAAAGATCATATAGATTT	0.473													36	89					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38802870	38802870	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38802870C>T	uc003ciq.2	-	6	696	c.696G>A	c.(694-696)CTG>CTA	p.L232L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	232	I.|Helical; Voltage-sensor; Name=S4 of repeat I; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CAATGACCTTCAGGCCTGCGG	0.512													11	37					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38830525	38830525	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38830525C>T	uc003ciq.2	-	3	392	c.392G>A	c.(391-393)TGG>TAG	p.W131*		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	131	Helical; Name=S1 of repeat I; (Potential).|I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TAAACTGAACCACCTGAAAGG	0.383													13	28					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38835304	38835304	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38835304G>A	uc003ciq.2	-	1	198	c.198C>T	c.(196-198)TTC>TTT	p.F66F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	66					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTCACCATAGAACTTGGGCA	0.542													52	120					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38835344	38835344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38835344G>A	uc003ciq.2	-	1	158	c.158C>T	c.(157-159)CCC>CTC	p.P53L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	53					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GTCCAGCTGGGGCCGAGGCTT	0.542													61	119					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38835376	38835376	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38835376C>T	uc003ciq.2	-	1	126	c.126G>A	c.(124-126)AGG>AGA	p.R42R		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	42					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCTTCTGCTCCCTATGCTTCT	0.522													57	143					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38888235	38888235	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38888235C>T	uc011ays.1	-	26	5525	c.5326G>A	c.(5326-5328)GGA>AGA	p.G1776R		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1776					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GACAAGTCTCCATTGCAAAGA	0.453													34	77					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38888670	38888670	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38888670C>T	uc011ays.1	-	26	5090	c.4891G>A	c.(4891-4893)GAA>AAA	p.E1631K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1631					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCAAACTTTTCCCACACTTCA	0.408													42	139					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38889214	38889214	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38889214C>T	uc011ays.1	-	26	4546	c.4347G>A	c.(4345-4347)TTG>TTA	p.L1449L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1449	IV.|Helical; Name=S3 of repeat IV; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CCTGATTTTCCAAGGTAGAAA	0.502													4	36					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38904723	38904723	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38904723C>A	uc011ays.1	-	24	4218	c.4019G>T	c.(4018-4020)GGA>GTA	p.G1340V	SCN11A_uc003cis.1_Missense_Mutation_p.G5V	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1340					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TTTTTTGGATCCTAATTTTTT	0.348													18	47					1.67942e-08	1.68421e-08	1	1	0
SCN11A	11280	broad.mit.edu	37	3	38913777	38913777	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38913777C>T	uc011ays.1	-	20	3601	c.3402G>A	c.(3400-3402)GTG>GTA	p.V1134V		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1134	III.|Helical; Name=S3 of repeat III; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGAGGGTGGTCACAGAGACCT	0.473													27	87					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38921528	38921528	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38921528G>A	uc011ays.1	-	19	3505	c.3306C>T	c.(3304-3306)ATC>ATT	p.I1102I	SCN11A_uc010hhn.1_Silent_p.I180I	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1102	Helical; Name=S2 of repeat III; (By similarity).|III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CCATCTCCAGGATAAAAATAT	0.348													17	34					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38927686	38927686	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38927686C>T	uc011ays.1	-	16	3078	c.2879G>A	c.(2878-2880)AGA>AAA	p.R960K	SCN11A_uc010hhn.1_Intron	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	960					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ACTTTGAACTCTCTGGCTCGT	0.448													21	61					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38936375	38936375	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38936375C>T	uc011ays.1	-	15	2683	c.2484G>A	c.(2482-2484)AGG>AGA	p.R828R	SCN11A_uc010hhn.1_5'UTR	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	828					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTTTAGTTTTCCTGGCCTCTC	0.468													20	58					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38938645	38938645	+	Silent	SNP	G	A	A	rs145915658		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38938645G>A	uc011ays.1	-	14	2293	c.2094C>T	c.(2092-2094)GTC>GTT	p.V698V	SCN11A_uc010hhn.1_5'Flank	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	698	II.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CAAGGGCTCCGACAGAGTTGC	0.433													16	54					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38941495	38941495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38941495G>A	uc011ays.1	-	13	2111	c.1912C>T	c.(1912-1914)CGC>TGC	p.R638C		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	638	II.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CAGCCTCGGCGAAAGTAGTGG	0.423													14	51					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38941514	38941514	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38941514G>A	uc011ays.1	-	13	2092	c.1893C>T	c.(1891-1893)CTC>CTT	p.L631L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	631	II.|Helical; Name=S2 of repeat II; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GGTAGGGATCGAGCGCAATGA	0.413													16	37					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38949552	38949552	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38949552G>A	uc011ays.1	-	10	1560	c.1361C>T	c.(1360-1362)ACC>ATC	p.T454I		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	454					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTTTTTTGGGGTAAAATATGA	0.388													36	94					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38950520	38950520	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38950520C>T	uc011ays.1	-	9	1466	c.1267G>A	c.(1267-1269)GAA>AAA	p.E423K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	423					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGCTGGGCTTCCTGAAACATC	0.512													60	174					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38968413	38968413	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38968413G>A	uc011ays.1	-	4	697	c.498C>T	c.(496-498)TTC>TTT	p.F166F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	166	Helical; Name=S2 of repeat I; (By similarity).|I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AAATCCCAGTGAAGACACACC	0.353													11	127					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38988326	38988326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38988326G>A	uc011ays.1	-	2	539	c.340C>T	c.(340-342)CCT>TCT	p.P114S		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	114					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GAATTGAAAGGCCCAAAAATG	0.373													36	84					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38991718	38991718	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:38991718C>T	uc011ays.1	-	1	335	c.136G>A	c.(136-138)GAA>AAA	p.E46K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	46					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGGGGTACTTCTCCTGTCTGG	0.527													85	143					0	0	1	0	0
TTC21A	199223	broad.mit.edu	37	3	39156146	39156146	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39156146C>T	uc003cjc.2	+	6	806	c.629C>T	c.(628-630)TCA>TTA	p.S210L	TTC21A_uc003cja.2_Missense_Mutation_p.S210L|TTC21A_uc010hho.1_Missense_Mutation_p.S132L|TTC21A_uc003cjb.2_Silent_p.F76F|TTC21A_uc003cje.2_Missense_Mutation_p.S210L|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Missense_Mutation_p.S169L	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	210	TPR 4.						binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		ACTGTGACTTCAGGGAGCTTC	0.552													47	105					0	0	1	0	0
TTC21A	199223	broad.mit.edu	37	3	39170381	39170381	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39170381C>T	uc003cjc.2	+	14	2052	c.1875C>T	c.(1873-1875)ATC>ATT	p.I625I	TTC21A_uc003cje.2_Silent_p.I626I|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Silent_p.I577I	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	625							binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		GGGCATCCATCTTATTGGAAC	0.552													31	68					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39226093	39226093	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39226093A>G	uc003cjk.1	-	2	5065	c.4844T>C	c.(4843-4845)GTT>GCT	p.V1615A	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.V298A	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1615							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GTGGCATTCAACCTTGGCTTG	0.572													48	134					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39226715	39226715	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39226715G>A	uc003cjk.1	-	2	4443	c.4222C>T	c.(4222-4224)CCC>TCC	p.P1408S	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.P91S	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1408							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GTGGGCCTGGGGGCCGTGGTG	0.602													22	54					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39227429	39227430	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39227429_39227430CC>TT	uc003cjk.1	-	2	3728_3729	c.3507_3508GG>AA	c.(3505-3510)AGGGAG>AGAAAG	p.E1170K	XIRP1_uc003cji.2_Intron|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1170							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		AGGGCAGTCTCCCTGTGCCTTG	0.639													12	29					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39228062	39228062	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39228062C>T	uc003cjk.1	-	2	3096	c.2875G>A	c.(2875-2877)GAG>AAG	p.E959K	XIRP1_uc003cji.2_Missense_Mutation_p.E959K|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	959							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TGGGCCCCCTCGCTGGCTGGC	0.657													21	58					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39228121	39228121	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39228121C>T	uc003cjk.1	-	2	3037	c.2816G>A	c.(2815-2817)AGT>AAT	p.S939N	XIRP1_uc003cji.2_Missense_Mutation_p.S939N|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	939							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GTGCAGGCCACTCAGGTCTCC	0.632													19	61					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39229826	39229826	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39229826C>T	uc003cjk.1	-	2	1332	c.1111G>A	c.(1111-1113)GAG>AAG	p.E371K	XIRP1_uc003cji.2_Missense_Mutation_p.E371K|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	371							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		ACCACTTCCTCCTTGGGTGGG	0.582													72	177					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39230162	39230162	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39230162C>T	uc003cjk.1	-	2	996	c.775G>A	c.(775-777)GAG>AAG	p.E259K	XIRP1_uc003cji.2_Missense_Mutation_p.E259K|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	259							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TGGATCTCCTCCCGGCATGCG	0.622													37	91					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39230877	39230877	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39230877C>T	uc003cjk.1	-	2	281	c.60G>A	c.(58-60)GAG>GAA	p.E20E	XIRP1_uc003cji.2_Silent_p.E20E|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	20	Interaction with VASP.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GGGGCAGGTCCTCTGCAGTTG	0.617													20	35					0	0	1	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307027	39307027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39307027G>A	uc003cjl.2	-	2	1066	c.974C>T	c.(973-975)TCC>TTC	p.S325F		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	325	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		TTCAGATGAGGAGAAATCAAC	0.478													59	110					0	0	1	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307132	39307132	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39307132G>A	uc003cjl.2	-	2	961	c.869C>T	c.(868-870)CCT>CTT	p.P290L		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	290	Helical; Name=7; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		ATAGATGAGAGGATTCAGGCA	0.498													41	87					0	0	1	0	0
CCR8	1237	broad.mit.edu	37	3	39374734	39374734	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39374734G>A	uc010hhr.2	+	2	1050	c.912G>A	c.(910-912)GGG>GGA	p.G304G	CCR8_uc003cjm.2_Silent_p.G221G	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	304	Helical; Name=7; (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		CTTTTGTTGGGGAGAAGTTCA	0.418													38	83					0	0	1	0	0
SLC25A38	54977	broad.mit.edu	37	3	39433010	39433010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:39433010C>T	uc003cjo.2	+	4	756	c.355C>T	c.(355-357)CAT>TAT	p.H119Y		NM_017875	NP_060345	Q96DW6	S2538_HUMAN	solute carrier family 25, member 38	119					erythrocyte differentiation|heme biosynthetic process|transport	integral to membrane|mitochondrial inner membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		CTTGCGAGGCCATCCCCCAAC	0.532													28	341					0	0	1	0	0
MYRIP	25924	broad.mit.edu	37	3	40208396	40208396	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:40208396G>A	uc003cka.2	+	6	745	c.610G>A	c.(610-612)GAA>AAA	p.E204K	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Missense_Mutation_p.E204K|MYRIP_uc010hhw.2_Missense_Mutation_p.E115K|MYRIP_uc011ayz.1_Missense_Mutation_p.E17K	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	204	Myosin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		GGCCATTGAGGAAGCAATTTC	0.552													27	70					0	0	1	0	0
MYRIP	25924	broad.mit.edu	37	3	40231732	40231732	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:40231732G>A	uc003cka.2	+	10	1578	c.1443G>A	c.(1441-1443)AGG>AGA	p.R481R	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Silent_p.R481R|MYRIP_uc010hhw.2_Silent_p.R392R|MYRIP_uc011ayz.1_Silent_p.R294R|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	481	Myosin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		AGGCCCCCAGGAACCCTGCAG	0.632													27	87					0	0	1	0	0
MYRIP	25924	broad.mit.edu	37	3	40231823	40231823	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:40231823G>A	uc003cka.2	+	10	1669	c.1534G>A	c.(1534-1536)GAG>AAG	p.E512K	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Missense_Mutation_p.E512K|MYRIP_uc010hhw.2_Missense_Mutation_p.E423K|MYRIP_uc011ayz.1_Missense_Mutation_p.E325K|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	512	Myosin-binding.|Actin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		GGACAGCAGCGAGCCGGAGGA	0.647													34	73					0	0	1	0	0
MYRIP	25924	broad.mit.edu	37	3	40251444	40251444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:40251444G>A	uc003cka.2	+	11	1900	c.1765G>A	c.(1765-1767)GAG>AAG	p.E589K	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Missense_Mutation_p.E589K|MYRIP_uc010hhw.2_Missense_Mutation_p.E500K|MYRIP_uc011ayz.1_Missense_Mutation_p.E402K|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	589	Actin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		CAGGCTGTACGAGTTAGCAAT	0.493													32	72					0	0	1	0	0
ENTPD3	956	broad.mit.edu	37	3	40433618	40433618	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:40433618G>A	uc003ckd.3	+	3	237	c.145G>A	c.(145-147)GAG>AAG	p.E49K	ENTPD3_uc010hhy.2_Missense_Mutation_p.E49K|uc003cke.3_RNA	NM_001248	NP_001239	O75355	ENTP3_HUMAN	ectonucleoside triphosphate diphosphohydrolase	49	Extracellular (Potential).					integral to membrane	ATP binding|hydrolase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0605)|Kidney(284;0.0758)		CCACAAGCAAGAGGTCCTCCC	0.468													24	84					0	0	1	0	0
ZNF619	285267	broad.mit.edu	37	3	40529675	40529675	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:40529675C>T	uc011azb.1	+	6	2072	c.1794C>T	c.(1792-1794)CTC>CTT	p.L598L	ZNF619_uc010hhz.2_Silent_p.L549L|ZNF619_uc003ckj.2_Silent_p.L542L|ZNF619_uc011azc.1_Silent_p.L558L|ZNF619_uc011azd.1_Silent_p.L514L|ZNF619_uc011aza.1_Silent_p.L500L	NM_001145082	NP_001138554	E9PCD9	E9PCD9_HUMAN	zinc finger protein 619 isoform 1	598					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		TTCAGGATCTCGCTTTTCCTG	0.498													98	78					0	0	1	0	0
ULK4	54986	broad.mit.edu	37	3	41439581	41439581	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:41439581G>A	uc003ckv.3	-	35	3868	c.3667C>T	c.(3667-3669)CTC>TTC	p.L1223F		NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	1223	HEAT 5.						ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		ATTCTTCTGAGAATCCTTAAC	0.473													35	100					0	0	1	0	0
ULK4	54986	broad.mit.edu	37	3	41759219	41759219	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:41759219C>T	uc003ckv.3	-	23	2656	c.2455_splice	c.e23+1	p.G819_splice		NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4								ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CTCCAATTTACCCAGGATTCG	0.453													19	68					0	0	1	0	0
ULK4	54986	broad.mit.edu	37	3	41795943	41795943	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:41795943G>A	uc003ckv.3	-	22	2432	c.2231C>T	c.(2230-2232)CCC>CTC	p.P744L		NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	744							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GCATGTTGAGGGGCTGTCAAG	0.368													16	83					0	0	1	0	0
ULK4	54986	broad.mit.edu	37	3	41957532	41957532	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:41957532G>A	uc003ckv.3	-	8	941	c.740C>T	c.(739-741)CCT>CTT	p.P247L	ULK4_uc003ckw.2_Missense_Mutation_p.P247L|ULK4_uc003ckx.1_Missense_Mutation_p.P247L	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	247	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		AGAAGCTTTAGGACGAGAAGA	0.274													29	76					0	0	1	0	0
CCK	885	broad.mit.edu	37	3	42299704	42299704	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42299704G>A	uc003clc.1	-	3	443	c.234C>T	c.(232-234)TCC>TCT	p.S78S	CCK_uc003cld.1_Silent_p.S78S	NM_000729	NP_000720	P06307	CCKN_HUMAN	cholecystokinin preproprotein	78					axonogenesis|eating behavior|neuron migration		neuropeptide hormone activity			central_nervous_system(1)	1		Ovarian(412;0.0728)		KIRC - Kidney renal clear cell carcinoma(284;0.219)		TCTTAACGATGGACATTCGTC	0.488													26	60					0	0	1	0	0
LYZL4	131375	broad.mit.edu	37	3	42445550	42445550	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42445550C>T	uc003cle.2	-	4	608	c.359G>A	c.(358-360)GGG>GAG	p.G120E		NM_144634	NP_653235	Q96KX0	LYZL4_HUMAN	lysozyme-like 4 precursor	120					cell wall macromolecule catabolic process	extracellular region	lysozyme activity			central_nervous_system(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.222)		TGCTCCCATCCCTTCTTTTCC	0.383													17	47					0	0	1	0	0
VIPR1	7433	broad.mit.edu	37	3	42567411	42567411	+	Missense_Mutation	SNP	G	A	A	rs35925925		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42567411G>A	uc003clf.2	+	4	449	c.325G>A	c.(325-327)GGC>AGC	p.G109S	VIPR1_uc011azl.1_Missense_Mutation_p.G62S|VIPR1_uc011azm.1_5'UTR|VIPR1_uc011azn.1_Missense_Mutation_p.G82S	NM_004624	NP_004615	P32241	VIPR1_HUMAN	vasoactive intestinal peptide receptor 1	109	Extracellular (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|muscle contraction|positive regulation of cell proliferation|synaptic transmission	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.241)		CACCGACGAAGGCTGGACGCA	0.642													4	11					0	0	1	0	0
VIPR1	7433	broad.mit.edu	37	3	42577678	42577678	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42577678G>A	uc003clf.2	+	13	1403	c.1279G>A	c.(1279-1281)GGC>AGC	p.G427S	VIPR1_uc011azl.1_Missense_Mutation_p.G379S|VIPR1_uc011azm.1_Missense_Mutation_p.G217S|VIPR1_uc011azn.1_Missense_Mutation_p.G400S|VIPR1_uc003clg.2_Missense_Mutation_p.G72S	NM_004624	NP_004615	P32241	VIPR1_HUMAN	vasoactive intestinal peptide receptor 1	427	Cytoplasmic (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|muscle contraction|positive regulation of cell proliferation|synaptic transmission	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.241)		AGGCAGCAACGGCGCCACGTG	0.692													3	13					0	0	1	0	0
KBTBD5	131377	broad.mit.edu	37	3	42728211	42728211	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42728211C>T	uc003clv.1	+	1	1201	c.1101C>T	c.(1099-1101)CTC>CTT	p.L367L		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	367	Kelch 1.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CTGGAGGCCTCTTCTACAACG	0.582													7	47					0	0	1	0	0
KBTBD5	131377	broad.mit.edu	37	3	42729691	42729691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42729691C>T	uc003clv.1	+	2	1310	c.1210C>T	c.(1210-1212)CTC>TTC	p.L404F		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	404	Kelch 1.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GCCCCGCTGCCTCTTTGGCCT	0.642													21	55					0	0	1	0	0
KBTBD5	131377	broad.mit.edu	37	3	42732372	42732372	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42732372C>T	uc003clv.1	+	5	1729	c.1629C>T	c.(1627-1629)TTC>TTT	p.F543F		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	543	Kelch 4.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		TCGAGGCCTTCCCACAGGAGC	0.622													15	45					0	0	1	0	0
HHATL	57467	broad.mit.edu	37	3	42739045	42739045	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42739045G>A	uc003clw.2	-	8	967	c.820C>T	c.(820-822)CCC>TCC	p.P274S	HHATL_uc003clx.2_Missense_Mutation_p.P274S	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	274					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		AGGTCGCTGGGGATAGTGAGG	0.612													43	89					0	0	1	0	0
HHATL	57467	broad.mit.edu	37	3	42739655	42739655	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42739655G>A	uc003clw.2	-	7	819	c.672C>T	c.(670-672)ACC>ACT	p.T224T	HHATL_uc003clx.2_Silent_p.T224T	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	224					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		AGCGATCAAAGGTCATGATGG	0.527													33	62					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42754799	42754799	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42754799C>T	uc003cly.3	-	14	1812	c.1728G>A	c.(1726-1728)GAG>GAA	p.E576E		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	576	Potential.									ovary(1)	1						TGCTGTTGCTCTCCTCCACCC	0.612													12	117					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42754805	42754805	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42754805C>T	uc003cly.3	-	14	1806	c.1722G>A	c.(1720-1722)GTG>GTA	p.V574V		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	574	Potential.									ovary(1)	1						TGCTCTCCTCCACCCTGGTGA	0.602													11	116					0	0	1	0	0
CCBP2	1238	broad.mit.edu	37	3	42906678	42906678	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42906678C>T	uc003cme.2	+	3	863	c.684C>T	c.(682-684)TTC>TTT	p.F228F	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmf.2_Silent_p.F228F|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	228	Helical; Name=5; (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity			lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		CCATGATCTTCTTCTACTCCC	0.572													84	164					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42915959	42915959	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42915959C>T	uc003cmh.2	-	1	1675	c.1350G>A	c.(1348-1350)GTG>GTA	p.V450V	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	450					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		TAAAGAGCTTCACCTCACTGA	0.537													25	48					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916090	42916090	+	Missense_Mutation	SNP	G	A	A	rs150584658		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42916090G>A	uc003cmh.2	-	1	1544	c.1219C>T	c.(1219-1221)CGC>TGC	p.R407C	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.R407C	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	407					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		TTGAGGAAGCGATCGTACTTG	0.557													66	186					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916456	42916457	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42916456_42916457CC>TT	uc003cmh.2	-	1	1177_1178	c.852_853GG>AA	c.(850-855)CAGGGG>CAAAGG	p.G285R	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.G285R	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	285					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		CCCGTGTTCCCCTGGGAGGCCC	0.579													8	17					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916519	42916520	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42916519_42916520CC>TT	uc003cmh.2	-	1	1114_1115	c.789_790GG>AA	c.(787-792)AGGGAG>AGAAAG	p.E264K	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.E264K	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	264					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		ACCCCCTGCTCCCTCAGAAACT	0.579													8	19					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916742	42916742	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42916742C>T	uc003cmh.2	-	1	892	c.567G>A	c.(565-567)ACG>ACA	p.T189T	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Silent_p.T189T	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	189					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		CCTTGTCCTTCGTGTAGCCGA	0.522													17	80					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42917072	42917072	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42917072G>A	uc003cmh.2	-	1	562	c.237C>T	c.(235-237)TTC>TTT	p.F79F	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Silent_p.F79F	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	79					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		GGTCCATGACGAAGGTGAAGT	0.483													19	47					0	0	1	0	0
ZNF662	389114	broad.mit.edu	37	3	42956099	42956100	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:42956099_42956100CC>TT	uc003cmi.2	+	5	886_887	c.534_535CC>TT	c.(532-537)CTCCTT>CTTTTT	p.L179F	ZNF662_uc003cmk.2_Missense_Mutation_p.L205F|ZNF662_uc003cmj.2_Missense_Mutation_p.L71F	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		TCAATAACCTCCTTGGTATACA	0.351													29	71					0	0	1	0	0
ANO10	55129	broad.mit.edu	37	3	43596891	43596891	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:43596891G>A	uc003cmv.2	-	10	1718	c.1547C>T	c.(1546-1548)CCA>CTA	p.P516L	ANO10_uc011azs.1_Missense_Mutation_p.P516L|ANO10_uc003cmw.2_Missense_Mutation_p.P450L|ANO10_uc010hil.2_Missense_Mutation_p.P326L|ANO10_uc011azt.1_Missense_Mutation_p.P405L	NM_018075	NP_060545	Q9NW15	ANO10_HUMAN	transmembrane protein 16K	516	Helical; (Potential).				cell death	chloride channel complex	chloride channel activity			ovary(2)	2						AGCTGCTAATGGGTAAACACA	0.383													24	83					0	0	1	0	0
ABHD5	51099	broad.mit.edu	37	3	43753252	43753252	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:43753252C>T	uc003cmx.2	+	4	668	c.558C>T	c.(556-558)GAC>GAT	p.D186D		NM_016006	NP_057090	Q8WTS1	ABHD5_HUMAN	abhydrolase domain containing 5	186					cell differentiation|fatty acid metabolic process|negative regulation of sequestering of triglyceride|phosphatidic acid biosynthetic process|positive regulation of triglyceride catabolic process|triglyceride catabolic process	cytosol|lipid particle	1-acylglycerol-3-phosphate O-acyltransferase activity|lysophosphatidic acid acyltransferase activity			ovary(1)	1		Renal(3;0.0134)		KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0687)		AACGACCAGACCTTGCTGATC	0.453													46	103					0	0	1	0	0
ABHD5	51099	broad.mit.edu	37	3	43753352	43753352	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:43753352T>G	uc003cmx.2	+	4	768	c.658T>G	c.(658-660)TTT>GTT	p.F220V		NM_016006	NP_057090	Q8WTS1	ABHD5_HUMAN	abhydrolase domain containing 5	220					cell differentiation|fatty acid metabolic process|negative regulation of sequestering of triglyceride|phosphatidic acid biosynthetic process|positive regulation of triglyceride catabolic process|triglyceride catabolic process	cytosol|lipid particle	1-acylglycerol-3-phosphate O-acyltransferase activity|lysophosphatidic acid acyltransferase activity			ovary(1)	1		Renal(3;0.0134)		KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0687)		TGCAGGACCCTTTGGTGAGTG	0.403													52	113					0	0	1	0	0
ABHD5	51099	broad.mit.edu	37	3	43756497	43756497	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:43756497C>T	uc003cmx.2	+	5	830	c.720C>T	c.(718-720)TTC>TTT	p.F240F		NM_016006	NP_057090	Q8WTS1	ABHD5_HUMAN	abhydrolase domain containing 5	240					cell differentiation|fatty acid metabolic process|negative regulation of sequestering of triglyceride|phosphatidic acid biosynthetic process|positive regulation of triglyceride catabolic process|triglyceride catabolic process	cytosol|lipid particle	1-acylglycerol-3-phosphate O-acyltransferase activity|lysophosphatidic acid acyltransferase activity			ovary(1)	1		Renal(3;0.0134)		KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0687)		CTTCAATGTTCGAAGACGATA	0.318													17	192					0	0	1	0	0
C3orf23	285343	broad.mit.edu	37	3	44402978	44402978	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:44402978C>T	uc010him.2	+	4	532	c.287C>T	c.(286-288)TCC>TTC	p.S96F	C3orf23_uc003cnd.3_Missense_Mutation_p.S96F|C3orf23_uc003cne.3_5'UTR	NM_173826	NP_776187	Q8N3R3	CC023_HUMAN	hypothetical protein LOC285343 isoform 1	96						mitochondrion				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(197;0.0468)|Kidney(197;0.0585)		GACCAGAGTTCCTCCGATGGC	0.383													11	76					0	0	1	0	0
ZNF445	353274	broad.mit.edu	37	3	44488448	44488448	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:44488448G>A	uc003cnf.2	-	8	3063	c.2715C>T	c.(2713-2715)TTC>TTT	p.F905F	ZNF445_uc011azv.1_Silent_p.F893F|ZNF445_uc011azw.1_Silent_p.F905F	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	905	C2H2-type 12.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		GTCTCCCAATGAACTCTTTCC	0.483													40	92					0	0	1	0	0
ZNF445	353274	broad.mit.edu	37	3	44489665	44489665	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:44489665G>A	uc003cnf.2	-	8	1846	c.1498C>T	c.(1498-1500)CTT>TTT	p.L500F	ZNF445_uc011azv.1_Missense_Mutation_p.L488F|ZNF445_uc011azw.1_Missense_Mutation_p.L500F	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	500	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		TGATACGCAAGATGGGAGCTA	0.493													42	72					0	0	1	0	0
ZNF167	55888	broad.mit.edu	37	3	44612310	44612310	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:44612310C>T	uc010hin.2	+	6	2096	c.1708C>T	c.(1708-1710)CAG>TAG	p.Q570*	ZNF167_uc003cni.2_Intron|ZNF167_uc010hio.2_Intron|ZNF167_uc003cnj.2_Nonsense_Mutation_p.Q570*|ZNF167_uc003cnk.2_Intron	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	570	C2H2-type 7.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		TATTCGACATCAGAGCCTCCA	0.438													32	101					0	0	1	0	0
ZNF660	285349	broad.mit.edu	37	3	44635928	44635928	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:44635928G>A	uc003cnl.1	+	3	576	c.243G>A	c.(241-243)AAG>AAA	p.K81K		NM_173658	NP_775929	Q6AZW8	ZN660_HUMAN	zinc finger protein 660	81	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(197;0.0468)|Kidney(197;0.0585)		ATAAGTGTAAGGAGTGTGGAA	0.448													24	80					0	0	1	0	0
ZNF197	10168	broad.mit.edu	37	3	44684449	44684449	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:44684449C>T	uc003cnm.2	+	6	2033	c.1827C>T	c.(1825-1827)TTC>TTT	p.F609F	ZNF197_uc003cnn.2_Intron|ZNF197_uc003cno.2_Intron|ZNF197_uc003cnp.2_Intron	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	609	C2H2-type 9.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		AGTCAAACTTCATTGACCATA	0.408													30	53					0	0	1	0	0
KIF15	56992	broad.mit.edu	37	3	44843419	44843419	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:44843419C>T	uc003cnx.3	+	13	1611	c.1462C>T	c.(1462-1464)CGT>TGT	p.R488C	KIF15_uc010hiq.2_Missense_Mutation_p.R391C|KIF15_uc003cny.1_Missense_Mutation_p.R123C	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	488	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		GGAGCAGGATCGTTTGCTCTC	0.378													13	34					0	0	1	0	0
TGM4	7047	broad.mit.edu	37	3	44951664	44951664	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:44951664G>A	uc003coc.3	+	11	1483	c.1410G>A	c.(1408-1410)GAG>GAA	p.E470E		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	470					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	CTGTAAAAGAGAACTTTCTTC	0.478													34	68					0	0	1	0	0
ZDHHC3	51304	broad.mit.edu	37	3	44974644	44974644	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:44974644G>A	uc003cod.2	-	5	850	c.576C>T	c.(574-576)TTC>TTT	p.F192F	ZDHHC3_uc003cog.2_Silent_p.F192F|ZDHHC3_uc011bad.1_Silent_p.F192F	NM_016598	NP_057682	Q9NYG2	ZDHC3_HUMAN	zinc finger, DHHC-type containing 3 isoform 2	192	Helical; (Potential).					Golgi membrane|integral to membrane	zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00943)|KIRC - Kidney renal clear cell carcinoma(197;0.053)|Kidney(197;0.0665)		GCAGGAAGTGGAATCCCACCA	0.522													19	71					0	0	1	0	0
EXOSC7	23016	broad.mit.edu	37	3	45030635	45030635	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45030635G>A	uc003coi.2	+	2	90	c.61G>A	c.(61-63)GAC>AAC	p.D21N	EXOSC7_uc003coh.1_5'UTR|EXOSC7_uc011bae.1_Missense_Mutation_p.D21N|EXOSC7_uc010his.1_Intron|EXOSC7_uc003coj.2_Missense_Mutation_p.D21N	NM_015004	NP_055819	Q15024	EXOS7_HUMAN	exosome component 7	21					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00911)|KIRC - Kidney renal clear cell carcinoma(197;0.0509)|Kidney(197;0.064)		CACCTAGGAAGACCTCCGTGT	0.507													11	35					0	0	1	0	0
CLEC3B	7123	broad.mit.edu	37	3	45077054	45077054	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45077054C>T	uc003cok.3	+	3	343	c.247C>T	c.(247-249)CTG>TTG	p.L83L	CLEC3B_uc003col.2_Silent_p.L41L	NM_003278	NP_003269	P05452	TETN_HUMAN	C-type lectin domain family 3, member B	83	C-type lectin.				skeletal system development	extracellular space	protein binding|sugar binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00863)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAAATGCTTTCTGGCCTTCAC	0.627													25	36					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45127468	45127468	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45127468C>T	uc003com.2	-	9	2308	c.2173G>A	c.(2173-2175)GGG>AGG	p.G725R		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	725	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		TCCTTTCGCCCTTTCTGAAAC	0.488													26	290					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45132974	45132974	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45132974G>A	uc003com.2	-	7	1819	c.1684C>T	c.(1684-1686)CCC>TCC	p.P562S		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	562	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		TCCCAGTTGGGGGTCCTCAGG	0.572													6	15					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45134815	45134815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45134815C>T	uc003com.2	-	6	1716	c.1581G>A	c.(1579-1581)GAG>GAA	p.E527E		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	527	CUB.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		GCCTGGAGGCCTCTTGTTGGA	0.527													32	73					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45134824	45134824	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45134824G>A	uc003com.2	-	6	1707	c.1572C>T	c.(1570-1572)TTC>TTT	p.F524F		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	524	CUB.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CCTCTTGTTGGAAGCTGGGGG	0.547													32	74					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45152068	45152068	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45152068C>T	uc003com.2	-	4	1056	c.921G>A	c.(919-921)GGG>GGA	p.G307G	CDCP1_uc003con.2_Silent_p.G307G	NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	307	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		GGTTGAAGTTCCCCGCCATGT	0.552													41	109					0	0	1	0	0
LARS2	23395	broad.mit.edu	37	3	45554637	45554637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45554637C>T	uc003cop.1	+	16	1956	c.1771C>T	c.(1771-1773)CAT>TAT	p.H591Y	LARS2_uc010hit.1_Missense_Mutation_p.H548Y	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	591					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	GGAGCCTTTTCATAAGCTGCT	0.512													15	154					0	0	1	0	0
LARS2	23395	broad.mit.edu	37	3	45557701	45557701	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45557701C>T	uc003cop.1	+	17	2162	c.1977C>T	c.(1975-1977)ATC>ATT	p.I659I	LARS2_uc010hit.1_Silent_p.I616I	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	659					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	AGTATGGGATCGACACGATTC	0.483													42	99					0	0	1	0	0
LARS2	23395	broad.mit.edu	37	3	45561771	45561771	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45561771C>T	uc003cop.1	+	19	2460	c.2275C>T	c.(2275-2277)CTC>TTC	p.L759F	LARS2_uc010hit.1_Missense_Mutation_p.L716F	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	759					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	GCTGATGGGACTCAGCAATGC	0.493													13	98					0	0	1	0	0
LIMD1	8994	broad.mit.edu	37	3	45637408	45637408	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45637408C>T	uc003coq.2	+	1	1086	c.1037C>T	c.(1036-1038)TCC>TTC	p.S346F		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	346					cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		TCTTACCTTTCCAGTTCTGCC	0.612													16	73					0	0	1	0	0
SACM1L	22908	broad.mit.edu	37	3	45773594	45773594	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45773594C>T	uc003cos.2	+	13	1255	c.1051C>T	c.(1051-1053)CGA>TGA	p.R351*	SACM1L_uc011bag.1_Nonsense_Mutation_p.R248*|SACM1L_uc011bah.1_Nonsense_Mutation_p.R285*|SACM1L_uc003cot.2_5'Flank	NM_014016	NP_054735	Q9NTJ5	SAC1_HUMAN	suppressor of actin 1	351	SAC.					Golgi apparatus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0102)|KIRC - Kidney renal clear cell carcinoma(197;0.0234)|Kidney(197;0.0277)		GAGATGGGATCGACTAAGTAT	0.338													47	133					0	0	1	0	0
SLC6A20	54716	broad.mit.edu	37	3	45807055	45807055	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45807055C>T	uc011bai.1	-	8	1401	c.1277G>A	c.(1276-1278)AGC>AAC	p.S426N	SLC6A20_uc003cow.2_Missense_Mutation_p.S76N|SLC6A20_uc011baj.1_Missense_Mutation_p.S389N	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	426	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		GGGCAGGTGGCTGGAGATGAT	0.632													9	17					0	0	1	0	0
SLC6A20	54716	broad.mit.edu	37	3	45817280	45817280	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45817280G>A	uc011bai.1	-	4	679	c.555C>T	c.(553-555)ATC>ATT	p.I185I	SLC6A20_uc011baj.1_Silent_p.I185I	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	185	Helical; Name=4; (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		TGCCACGCAGGATGCACAGGT	0.657													31	73					0	0	1	0	0
SLC6A20	54716	broad.mit.edu	37	3	45817352	45817352	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45817352C>T	uc011bai.1	-	4	607	c.483G>A	c.(481-483)CAG>CAA	p.Q161Q	SLC6A20_uc011baj.1_Silent_p.Q161Q	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	161	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		CCCCGTTCTCCTGGAGGGACG	0.607													40	143					0	0	1	0	0
SLC6A20	54716	broad.mit.edu	37	3	45817476	45817476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45817476G>A	uc011bai.1	-	4	483	c.359C>T	c.(358-360)CCC>CTC	p.P120L	SLC6A20_uc011baj.1_Missense_Mutation_p.P120L	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	120	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		CCACGGCAGGGGATCCTGTGG	0.582													33	60					0	0	1	0	0
FYCO1	79443	broad.mit.edu	37	3	45972760	45972760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45972760G>A	uc003cpb.3	-	16	4260	c.4054C>T	c.(4054-4056)CTC>TTC	p.L1352F	FYCO1_uc011bal.1_Missense_Mutation_p.L1372F	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	1352	GOLD.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		TCCACTGTGAGGGGTACTTTG	0.547													10	32					0	0	1	0	0
CXCR6	10663	broad.mit.edu	37	3	45988648	45988648	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:45988648G>A	uc003cpc.1	+	2	756	c.675G>A	c.(673-675)CAG>CAA	p.Q225Q	FYCO1_uc003cpb.3_Intron|FYCO1_uc011bal.1_Intron|CXCR6_uc010hix.1_Silent_p.Q225Q	NM_006564	NP_006555	O00574	CXCR6_HUMAN	G protein-coupled receptor TYMSTR	225	Cytoplasmic (Potential).				viral genome replication	integral to plasma membrane	coreceptor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GAGGCTTCCAGAAGCACAGAT	0.498													25	85					0	0	1	0	0
FYCO1	79443	broad.mit.edu	37	3	46023068	46023068	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46023068G>A	uc003cpb.3	-	3	362	c.156C>T	c.(154-156)CTC>CTT	p.L52L	FYCO1_uc011bal.1_Silent_p.L52L	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	52	RUN.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		TTACTTGCAGGAGATACTCAA	0.418													11	46					0	0	1	0	0
XCR1	2829	broad.mit.edu	37	3	46062465	46062465	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46062465G>A	uc003cpe.2	-	3	1199	c.975C>T	c.(973-975)TTC>TTT	p.F325F	uc003cpd.1_5'Flank|XCR1_uc003cpf.2_Silent_p.F325F	NM_005283	NP_005274	P46094	XCR1_HUMAN	XC chemokine receptor 1	325	Cytoplasmic (Potential).				chemotaxis|G-protein signaling, coupled to cyclic nucleotide second messenger|inflammatory response	integral to plasma membrane	chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		CCTCATAGGCGAAGGCACCAG	0.647													5	10					0	0	1	0	0
XCR1	2829	broad.mit.edu	37	3	46062951	46062951	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46062951G>A	uc003cpe.2	-	3	713	c.489C>T	c.(487-489)CTC>CTT	p.L163L	uc003cpd.1_5'Flank|XCR1_uc003cpf.2_Silent_p.L163L	NM_005283	NP_005274	P46094	XCR1_HUMAN	XC chemokine receptor 1	163	Helical; Name=4; (Potential).				chemotaxis|G-protein signaling, coupled to cyclic nucleotide second messenger|inflammatory response	integral to plasma membrane	chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		AGATGGTGTCGAGGATGGAGG	0.602													10	19					0	0	1	0	0
CCR1	1230	broad.mit.edu	37	3	46244856	46244856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46244856G>A	uc003cph.1	-	2	1020	c.949C>T	c.(949-951)CAC>TAC	p.H317Y	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	317	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		ACACGCCTGTGGAACAACTGC	0.592													18	33					0	0	1	0	0
CCR1	1230	broad.mit.edu	37	3	46244896	46244896	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46244896G>A	uc003cph.1	-	2	980	c.909C>T	c.(907-909)TTC>TTT	p.F303F	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	303	Helical; Name=7; (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		TCTCACCAACGAAGGCGTAGA	0.582													17	30					0	0	1	0	0
CCR1	1230	broad.mit.edu	37	3	46245220	46245220	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46245220C>T	uc003cph.1	-	2	656	c.585G>A	c.(583-585)TGG>TGA	p.W195*	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	195	Extracellular (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GAAACAGCTTCCACTCTCGTA	0.468													36	73					0	0	1	0	0
CCR3	1232	broad.mit.edu	37	3	46306722	46306722	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46306722G>A	uc003cpg.1	+	4	616	c.73G>A	c.(73-75)GAA>AAA	p.E25K	CCR3_uc003cpi.1_Missense_Mutation_p.E25K|CCR3_uc003cpj.1_Missense_Mutation_p.E25K|CCR3_uc003cpk.1_Missense_Mutation_p.E46K|CCR3_uc010hjb.1_Missense_Mutation_p.E43K|CCR3_uc003cpl.1_Missense_Mutation_p.E58K	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	25	Extracellular (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		CCTGCTCTGTGAAAAAGCTGA	0.502													17	41					0	0	1	0	0
CCR3	1232	broad.mit.edu	37	3	46306935	46306935	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46306935G>A	uc003cpg.1	+	4	829	c.286G>A	c.(286-288)GGG>AGG	p.G96R	CCR3_uc003cpi.1_Missense_Mutation_p.G96R|CCR3_uc003cpj.1_Missense_Mutation_p.G96R|CCR3_uc003cpk.1_Missense_Mutation_p.G117R|CCR3_uc010hjb.1_Missense_Mutation_p.G114R|CCR3_uc003cpl.1_Missense_Mutation_p.G129R	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	96	Extracellular (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		CTATGTCAGGGGGCATAACTG	0.493													87	217					0	0	1	0	0
CCR3	1232	broad.mit.edu	37	3	46307639	46307639	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46307639C>T	uc003cpg.1	+	4	1533	c.990C>T	c.(988-990)TTC>TTT	p.F330F	CCR3_uc003cpi.1_Silent_p.F330F|CCR3_uc003cpj.1_Silent_p.F330F|CCR3_uc003cpk.1_Silent_p.F351F|CCR3_uc010hjb.1_Silent_p.F348F|CCR3_uc003cpl.1_Silent_p.F363F	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	330	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		ACATCCCATTCCTTCCTAGTG	0.512													7	60					0	0	1	0	0
CCR2	729230	broad.mit.edu	37	3	46399344	46399344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46399344G>A	uc003cpn.3	+	2	811	c.326G>A	c.(325-327)GGG>GAG	p.G109E	CCR2_uc003cpm.3_Missense_Mutation_p.G109E	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	109	Extracellular (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		TGGGTCTTTGGGAATGCAATG	0.438													102	245					0	0	1	0	0
CCR5	1234	broad.mit.edu	37	3	46414494	46414494	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46414494C>T	uc003cpo.3	+	3	223	c.101C>T	c.(100-102)CCT>CTT	p.P34L	CCR5_uc010hjd.2_Missense_Mutation_p.P34L	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	34	Helical; Name=1; (Potential).		P -> L (in TZCCR5-179).		cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	CGCCTCCTGCCTCCGCTCTAC	0.453													48	144					0	0	1	0	0
CCR5	1234	broad.mit.edu	37	3	46415189	46415189	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46415189C>T	uc003cpo.3	+	3	918	c.796C>T	c.(796-798)CTG>TTG	p.L266L	CCR5_uc010hjd.2_Silent_p.L266L	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	266	Extracellular (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	ATTCTTTGGCCTGAATAATTG	0.468													123	352					0	0	1	0	0
CCRL2	9034	broad.mit.edu	37	3	46450311	46450311	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46450311C>T	uc003cpp.3	+	2	1026	c.741C>T	c.(739-741)TTC>TTT	p.F247F	CCRL2_uc010hjg.2_Silent_p.F259F|CCRL2_uc010hjf.2_Silent_p.F247F	NM_003965	NP_003956	O00421	CCRL2_HUMAN	chemokine (C-C motif) receptor-like 2 isoform 1	247	Helical; Name=6; (Potential).				chemotaxis|inflammatory response	integral to plasma membrane	CCR chemokine receptor binding|chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)		TGGTAGTCTTCCTTCTGATGT	0.403													144	384					0	0	1	0	0
LTF	4057	broad.mit.edu	37	3	46497339	46497339	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46497339C>T	uc003cpq.2	-	4	484	c.446G>A	c.(445-447)GGG>GAG	p.G149E	LTF_uc003fzr.2_Missense_Mutation_p.G105E|LTF_uc010hjh.2_Missense_Mutation_p.G149E|LTF_uc003cpr.2_Missense_Mutation_p.G136E	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	149	Transferrin-like 1.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	ACGAAGTGTCCCTATAGGGAC	0.572													21	37					0	0	1	0	0
LTF	4057	broad.mit.edu	37	3	46497370	46497370	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46497370G>A	uc003cpq.2	-	4	453	c.415C>T	c.(415-417)CGC>TGC	p.R139C	LTF_uc003fzr.2_Missense_Mutation_p.R95C|LTF_uc010hjh.2_Missense_Mutation_p.R139C|LTF_uc003cpr.2_Missense_Mutation_p.R126C	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	139	Transferrin-like 1.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	GCGGTCCTGCGAAGGCCTGTG	0.562													13	39					0	0	1	0	0
RTP3	83597	broad.mit.edu	37	3	46541948	46541948	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46541948G>A	uc003cps.1	+	2	326	c.258G>A	c.(256-258)ATG>ATA	p.M86I		NM_031440	NP_113628	Q9BQQ7	RTP3_HUMAN	transmembrane protein 7	86	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		AGGTGAAGATGAGGGTGTTTA	0.522													13	187					0	0	1	0	0
LRRC2	79442	broad.mit.edu	37	3	46593050	46593050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46593050G>A	uc010hji.2	-	2	396	c.32C>T	c.(31-33)TCT>TTT	p.S11F	LRRC2_uc003cpu.3_Missense_Mutation_p.S11F	NM_024512	NP_078788	Q9BYS8	LRRC2_HUMAN	leucine rich repeat containing 2	11										ovary(1)	1		Ovarian(412;0.0563)		OV - Ovarian serous cystadenocarcinoma(275;6.37e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00133)|KIRC - Kidney renal clear cell carcinoma(197;0.0214)|Kidney(197;0.0254)		TCTGATGACAGAAATGTCGAA	0.413													42	90					0	0	1	0	0
ALS2CL	259173	broad.mit.edu	37	3	46713053	46713053	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46713053C>T	uc003cqa.1	-	25	2896	c.2706G>A	c.(2704-2706)GAG>GAA	p.E902E	ALS2CL_uc003cpx.1_Silent_p.E249E|ALS2CL_uc003cpy.1_RNA|ALS2CL_uc003cpz.1_Silent_p.E417E|ALS2CL_uc003cqb.1_Silent_p.E902E|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	902	VPS9.				endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		TCAGGTGGATCTCGGCTCCCA	0.542													15	67					0	0	1	0	0
ALS2CL	259173	broad.mit.edu	37	3	46713060	46713060	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46713060C>T	uc003cqa.1	-	25	2889	c.2699G>A	c.(2698-2700)GGA>GAA	p.G900E	ALS2CL_uc003cpx.1_Missense_Mutation_p.G247E|ALS2CL_uc003cpy.1_RNA|ALS2CL_uc003cpz.1_Missense_Mutation_p.G415E|ALS2CL_uc003cqb.1_Missense_Mutation_p.G900E|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	900	VPS9.				endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		GATCTCGGCTCCCAGGTGCTG	0.517													14	65					0	0	1	0	0
ALS2CL	259173	broad.mit.edu	37	3	46713683	46713684	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46713683_46713684GG>TA	uc003cqa.1	-	23	2670_2671	c.2480_2481CC>TA	c.(2479-2481)TCC>TTA	p.S827L	ALS2CL_uc003cpx.1_Missense_Mutation_p.S174L|ALS2CL_uc003cpy.1_RNA|ALS2CL_uc003cpz.1_Missense_Mutation_p.S342L|ALS2CL_uc003cqb.1_Missense_Mutation_p.S827L|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	827	VPS9.				endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		CCCTGACCAGGGAGTACCTCTG	0.649													9	34					0	0	1	0	0
ALS2CL	259173	broad.mit.edu	37	3	46718188	46718188	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46718188G>A	uc003cqa.1	-	18	2162	c.1972C>T	c.(1972-1974)CTG>TTG	p.L658L	ALS2CL_uc003cpx.1_Silent_p.L5L|ALS2CL_uc003cpy.1_RNA|ALS2CL_uc003cpz.1_Silent_p.L173L|ALS2CL_uc003cqb.1_Silent_p.L658L|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	658					endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		AGCTCCTCCAGGATGTCTTCC	0.652													26	51					0	0	1	0	0
ALS2CL	259173	broad.mit.edu	37	3	46727042	46727042	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46727042G>A	uc003cqa.1	-	7	949	c.759C>T	c.(757-759)CTC>CTT	p.L253L	ALS2CL_uc003cqb.1_Silent_p.L253L|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	253					endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		CATCATCAAAGAGCAGCACAC	0.617													9	30					0	0	1	0	0
ALS2CL	259173	broad.mit.edu	37	3	46727878	46727878	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46727878G>A	uc003cqa.1	-	6	776	c.586C>T	c.(586-588)CTG>TTG	p.L196L	ALS2CL_uc003cqb.1_Silent_p.L196L|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	196					endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		AAGGACTGCAGGTTCCCAAAG	0.617													20	55					0	0	1	0	0
PRSS50	29122	broad.mit.edu	37	3	46753846	46753846	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46753846G>A	uc003cqe.1	-	6	1107	c.1048C>T	c.(1048-1050)CAA>TAA	p.Q350*	PRSS50_uc003cqf.1_Nonsense_Mutation_p.Q264*	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50 precursor	350	Peptidase S1.				proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						ATCCAGTGTTGGTAGGAGGAG	0.657													6	25					0	0	1	0	0
PRSS50	29122	broad.mit.edu	37	3	46754528	46754528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46754528C>T	uc003cqe.1	-	5	843	c.784G>A	c.(784-786)GAG>AAG	p.E262K	PRSS50_uc003cqf.1_Missense_Mutation_p.E176K	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50 precursor	262	Peptidase S1.				proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						ACTTCCTTCTCCTGAATGGTC	0.532													81	189					0	0	1	0	0
PRSS50	29122	broad.mit.edu	37	3	46757161	46757161	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46757161G>A	uc003cqe.1	-	3	393	c.334C>T	c.(334-336)CCC>TCC	p.P112S	PRSS50_uc003cqf.1_Missense_Mutation_p.P26S	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50 precursor	112	Peptidase S1.				proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						CTGAGGGTGGGGTCCTGCTCG	0.637													3	13					0	0	1	0	0
PRSS42	339906	broad.mit.edu	37	3	46874578	46874578	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46874578G>A	uc011bap.1	-	3	490	c.490C>T	c.(490-492)CGA>TGA	p.R164*	PRSS42_uc003cqj.2_Nonsense_Mutation_p.R60*	NM_182702	NP_874361	Q7Z5A4	PRS42_HUMAN	testis serine protease 2 precursor	164	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			pancreas(1)	1						AGGTCATTTCGAATGGTTGTA	0.458													32	52					0	0	1	0	0
MYL3	4634	broad.mit.edu	37	3	46899877	46899877	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46899877C>T	uc003cql.1	-	5	649	c.556G>A	c.(556-558)GAA>AAA	p.E186K		NM_000258	NP_000249	P08590	MYL3_HUMAN	slow skeletal ventricular myosin alkali light	186	EF-hand 3.				cardiac muscle contraction|muscle filament sliding|positive regulation of ATPase activity|regulation of striated muscle contraction|regulation of the force of heart contraction|ventricular cardiac muscle tissue morphogenesis	A band|cytosol|I band|muscle myosin complex	actin monomer binding|calcium ion binding|myosin II heavy chain binding|structural constituent of muscle				0				BRCA - Breast invasive adenocarcinoma(193;0.00116)|KIRC - Kidney renal clear cell carcinoma(197;0.00557)|Kidney(197;0.0063)		AGCCCACCTTCATAGTTGATG	0.602													15	62					0	0	1	0	0
PTH1R	5745	broad.mit.edu	37	3	46935494	46935494	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46935494G>A	uc003cqm.2	+	4	376	c.173G>A	c.(172-174)AGG>AAG	p.R58K	PTH1R_uc003cqn.2_Missense_Mutation_p.R58K	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	58	Extracellular (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						GTCCTGCAGAGGCCAGGTGGG	0.597									Ollier_disease_/_Maffuci_syndrome				5	31					0	0	1	0	0
PTH1R	5745	broad.mit.edu	37	3	46945084	46945084	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:46945084G>A	uc003cqm.2	+	16	1923	c.1720G>A	c.(1720-1722)GAG>AAG	p.E574K	PTH1R_uc003cqn.2_Missense_Mutation_p.E574K	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	574	Cytoplasmic (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						CCTGGACGAGGAGGCCTCTGG	0.652									Ollier_disease_/_Maffuci_syndrome				57	120					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47031040	47031040	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47031040C>T	uc003cqp.2	+	6	692	c.513C>T	c.(511-513)TTC>TTT	p.F171F	NBEAL2_uc003cqq.1_Silent_p.F164F	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	171							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		AATACAAGTTCCCTCCTGCTG	0.622													5	12					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47041164	47041164	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47041164C>T	uc003cqp.2	+	26	3927	c.3748C>T	c.(3748-3750)CTC>TTC	p.L1250F	NBEAL2_uc010hjm.1_Intron|NBEAL2_uc010hjn.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1250	Leu-rich.						binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		ACAGCTGTCCCTCCAGGCTGA	0.607													10	39					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47041551	47041551	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47041551C>T	uc003cqp.2	+	27	4141	c.3962C>T	c.(3961-3963)CCC>CTC	p.P1321L	NBEAL2_uc010hjm.1_Intron|NBEAL2_uc010hjn.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1321	Pro-rich.						binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		CCCAAGCCACCCACTGAGTCA	0.637													20	62					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47043884	47043884	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47043884C>T	uc003cqp.2	+	32	5354	c.5175C>T	c.(5173-5175)TTC>TTT	p.F1725F	NBEAL2_uc010hjm.1_Silent_p.F1102F|NBEAL2_uc010hjn.1_Silent_p.F121F|NBEAL2_uc010hjo.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1725							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		TGTCCCAGTTCGAAATGGACA	0.582													23	60					0	0	1	0	0
SETD2	29072	broad.mit.edu	37	3	47162320	47162320	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47162320G>A	uc003cqs.2	-	3	3859	c.3806C>T	c.(3805-3807)ACC>ATC	p.T1269I	SETD2_uc003cqv.2_Missense_Mutation_p.T1258I	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1269				T -> A (in Ref. 4; CAC28349, 6; AAT77612 and 7; AAT77613).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		CTGATACGTGGTAGAAGGCTT	0.463			N|F|S|Mis		clear cell renal carcinoma								37	87					0	0	1	0	0
KIF9	64147	broad.mit.edu	37	3	47282381	47282381	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47282381C>T	uc010hjp.2	-	18	2438	c.1834G>A	c.(1834-1836)GAG>AAG	p.E612K	KIF9_uc003cqx.2_Missense_Mutation_p.E612K|KIF9_uc003cqy.2_Missense_Mutation_p.E547K|KIF9_uc011bat.1_RNA|uc003cqw.1_Intron	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	612					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TGTGTGGTCTCGCTGGCCCTT	0.458													41	90					0	0	1	0	0
KLHL18	23276	broad.mit.edu	37	3	47371532	47371532	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47371532C>T	uc003crd.2	+	4	619	c.493C>T	c.(493-495)CAG>TAG	p.Q165*	KLHL18_uc003crc.2_Nonsense_Mutation_p.Q165*|KLHL18_uc011bav.1_Nonsense_Mutation_p.Q53*|KLHL18_uc010hjq.1_Nonsense_Mutation_p.Q16*	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	165	BACK.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		CTTCATCCACCAGCACTTTGT	0.532													29	88					0	0	1	0	0
KLHL18	23276	broad.mit.edu	37	3	47384223	47384223	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47384223C>T	uc003crd.2	+	9	1367	c.1241C>T	c.(1240-1242)ACC>ATC	p.T414I	KLHL18_uc011bav.1_Missense_Mutation_p.T302I	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	414	Kelch 3.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		ACAGTGGTGACCTCGATGAGC	0.507													18	48					0	0	1	0	0
SMARCC1	6599	broad.mit.edu	37	3	47651609	47651609	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47651609G>A	uc003crq.2	-	26	3108	c.2990C>T	c.(2989-2991)CCT>CTT	p.P997L	SMARCC1_uc011bbc.1_RNA|SMARCC1_uc011bbd.1_Missense_Mutation_p.P888L	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	997	Pro-rich.				chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		AGGGTAGGGAGGGGGCTGTTG	0.602													12	113					0	0	1	0	0
SMARCC1	6599	broad.mit.edu	37	3	47703861	47703861	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47703861G>A	uc003crq.2	-	20	2239	c.2121C>T	c.(2119-2121)GAC>GAT	p.D707D	SMARCC1_uc011bbc.1_RNA|SMARCC1_uc011bbd.1_Silent_p.D598D	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	707					chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		CCACGCGAGGGTCCACCACAG	0.478													17	59					0	0	1	0	0
MAP4	4134	broad.mit.edu	37	3	47913525	47913525	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47913525G>A	uc003csb.2	-	11	2914	c.2388C>T	c.(2386-2388)GCC>GCT	p.A796A	MAP4_uc003csc.3_Silent_p.A796A|MAP4_uc003crw.2_5'Flank|MAP4_uc003crx.2_Silent_p.A56A|MAP4_uc011bbe.1_Silent_p.A547A|MAP4_uc003cry.2_Silent_p.A531A|MAP4_uc003csa.3_Silent_p.A531A|MAP4_uc003crz.3_RNA|MAP4_uc003csd.2_Silent_p.A531A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	796					negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CAGATCTGGAGGCTGGGGCAG	0.577													71	205					0	0	1	0	0
MAP4	4134	broad.mit.edu	37	3	47958661	47958661	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:47958661G>A	uc003csb.2	-	7	1182	c.656C>T	c.(655-657)CCC>CTC	p.P219L	MAP4_uc003csc.3_Missense_Mutation_p.P219L|MAP4_uc011bbf.1_Missense_Mutation_p.P196L|MAP4_uc003csf.3_Missense_Mutation_p.P236L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	219					negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TAGCTCTAAGGGAACTAAATT	0.413													37	109					0	0	1	0	0
CDC25A	993	broad.mit.edu	37	3	48209415	48209415	+	Missense_Mutation	SNP	G	A	A	rs141219026	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48209415G>A	uc003csh.1	-	10	1314	c.950C>T	c.(949-951)TCC>TTC	p.S317F	CDC25A_uc003csi.1_Missense_Mutation_p.S277F	NM_001789	NP_001780	P30304	MPIP1_HUMAN	cell division cycle 25A isoform a	317					cell cycle checkpoint|cell division|cell proliferation|cellular response to UV|DNA replication|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|kidney(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000685)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		AGATGCCAGGGATAAAGACTG	0.443													15	44					0	0	1	0	0
FBXW12	285231	broad.mit.edu	37	3	48414334	48414334	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48414334C>T	uc003csr.2	+	2	263	c.77C>T	c.(76-78)TCC>TTC	p.S26F	FBXW12_uc010hjv.2_Intron|FBXW12_uc003css.2_Missense_Mutation_p.S26F|FBXW12_uc010hjw.2_Intron	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	26	F-box.										0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTGCAGGTTTCCCAGGTGAAC	0.542													18	101					0	0	1	0	0
FBXW12	285231	broad.mit.edu	37	3	48419867	48419867	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48419867C>T	uc003csr.2	+	6	652	c.466C>T	c.(466-468)CCT>TCT	p.P156S	FBXW12_uc010hjv.2_Missense_Mutation_p.P137S|FBXW12_uc003css.2_Intron|FBXW12_uc010hjw.2_Intron	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	156	WD 2.										0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGTAACCCTCCCTCAGATGCA	0.507													6	56					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48451735	48451736	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48451735_48451736GG>AA	uc003csw.2	-	31	5844_5845	c.5574_5575CC>TT	c.(5572-5577)CTCCGG>CTTTGG	p.R1859W	PLXNB1_uc003cst.2_Missense_Mutation_p.R309W|PLXNB1_uc003csu.2_Missense_Mutation_p.R1676W|PLXNB1_uc003csx.2_Missense_Mutation_p.R1859W	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1859	Cytoplasmic (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGGTTTTCCCGGAGCACATGCT	0.629													9	38					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48461033	48461033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48461033G>A	uc003csw.2	-	11	2932	c.2662C>T	c.(2662-2664)CCG>TCG	p.P888S	PLXNB1_uc003csu.2_Missense_Mutation_p.P705S|PLXNB1_uc003csx.2_Missense_Mutation_p.P888S|PLXNB1_uc010hjx.1_RNA	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	888	Extracellular (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AGGCTGGACGGGAGGATGAGG	0.672													11	31					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48461415	48461415	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48461415G>A	uc003csw.2	-	11	2550	c.2280C>T	c.(2278-2280)TCC>TCT	p.S760S	PLXNB1_uc003csu.2_Intron|PLXNB1_uc003csx.2_Silent_p.S760S|PLXNB1_uc010hjx.1_Intron	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	760	Extracellular (Potential).|Pro-rich.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGCTGGGAGGGGAGGGCTCCT	0.657													7	18					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48463602	48463602	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48463602G>A	uc003csw.2	-	6	1702	c.1432C>T	c.(1432-1434)CCT>TCT	p.P478S	PLXNB1_uc003csu.2_Missense_Mutation_p.P478S|PLXNB1_uc003csx.2_Missense_Mutation_p.P478S|PLXNB1_uc010hjx.1_RNA	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	478	Extracellular (Potential).|Sema.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GAAGCCACAGGAACCTTCAGA	0.592													21	33					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48465262	48465262	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48465262G>A	uc003csw.2	-	3	1029	c.759C>T	c.(757-759)CTC>CTT	p.L253L	PLXNB1_uc003csu.2_Silent_p.L253L|PLXNB1_uc003csx.2_Silent_p.L253L|PLXNB1_uc010hjx.1_RNA	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	253	Extracellular (Potential).|Sema.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCTGGTCCCGGAGACACACTC	0.622													17	82					0	0	1	0	0
ATRIP	84126	broad.mit.edu	37	3	48501206	48501206	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48501206C>T	uc003ctf.1	+	7	978	c.946C>T	c.(946-948)CTC>TTC	p.L316F	ATRIP_uc011bbj.1_Missense_Mutation_p.L189F|ATRIP_uc003ctg.1_Missense_Mutation_p.L316F|TREX1_uc010hjy.2_5'UTR	NM_130384	NP_569055	Q8WXE1	ATRIP_HUMAN	ATR interacting protein isoform 1	316					DNA damage checkpoint|DNA repair|DNA replication	nucleoplasm	protein binding|protein serine/threonine kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GATAAACCTGCTCCTGAAGCA	0.507								Other_conserved_DNA_damage_response_genes					49	210					0	0	1	0	0
PFKFB4	5210	broad.mit.edu	37	3	48587373	48587373	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48587373G>A	uc003ctv.2	-	3	252	c.235C>T	c.(235-237)CGC>TGC	p.R79C	PFKFB4_uc003ctw.2_5'UTR|PFKFB4_uc010hkc.2_Missense_Mutation_p.R79C|PFKFB4_uc003ctx.2_Missense_Mutation_p.R36C|PFKFB4_uc010hkb.2_Missense_Mutation_p.R79C|PFKFB4_uc011bbm.1_Missense_Mutation_p.R68C|PFKFB4_uc011bbn.1_RNA	NM_004567	NP_004558	Q16877	F264_HUMAN	6-phosphofructo-2-kinase/fructose-2,	79	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0003)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		ACGTCCCGGCGATACTGGCCA	0.502													25	59					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48602556	48602556	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48602556G>A	uc003ctz.2	-	116	8607	c.8606C>T	c.(8605-8607)CCT>CTT	p.P2869L	UCN2_uc003cty.1_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2869	Nonhelical region (NC2).				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ACTATCCCAAGGAGCTTCAGG	0.612													5	32					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48602929	48602929	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48602929C>T	uc003ctz.2	-	115	8442	c.8441G>A	c.(8440-8442)CGA>CAA	p.R2814Q	UCN2_uc003cty.1_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2814	Nonhelical region (NC2).				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGGGAGGGGTCCTGGAGCCAA	0.642													8	16					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48607739	48607739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48607739G>A	uc003ctz.2	-	97	7410	c.7409C>T	c.(7408-7410)CCC>CTC	p.P2470L		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2470	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTCGCCTCGGGGCCCAGGCAG	0.622													23	72					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48609816	48609816	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48609816C>T	uc003ctz.2	-	89	6976	c.6975G>A	c.(6973-6975)GAG>GAA	p.E2325E		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2325	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TACTTACCGGCTCACCCACCA	0.597													36	84					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48613161	48613161	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48613161G>A	uc003ctz.2	-	72	5878	c.5877C>T	c.(5875-5877)ATC>ATT	p.I1959I		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1959	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGGTCTCCACGATCTCCCGCA	0.682													29	65					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48614119	48614120	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48614119_48614120GG>AA	uc003ctz.2	-	67	5690_5691	c.5689_5690CC>TT	c.(5689-5691)CCT>TTT	p.P1897F		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1897	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTGGCCAGGAGGGCCCACTGGC	0.614													4	8					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48615797	48615797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48615797C>T	uc003ctz.2	-	64	5490	c.5489G>A	c.(5488-5490)GGA>GAA	p.G1830E		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1830	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GCCTGGCTTTCCCTGTGGGAA	0.562													28	76					0	0	1	0	0
MIR711	100313843	broad.mit.edu	37	3	48616395	48616395	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48616395G>A	hsa-mir-711|MI0012488	-			c.16G>A			COL7A1_uc003ctz.2_Intron																	0						ACCCTGAGGAGAGACTCAAAG	0.612													11	30					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48620047	48620047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48620047G>A	uc003ctz.2	-	44	4559	c.4558C>T	c.(4558-4560)CCT>TCT	p.P1520S		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1520	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTCACTTCAGGACCCTTGGCT	0.602													15	54					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48624743	48624743	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48624743G>A	uc003ctz.2	-	23	3020	c.3019C>T	c.(3019-3021)CCA>TCA	p.P1007S		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1007	Nonhelical region (NC1).|Fibronectin type-III 9.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GAGATCCCTGGAAGTGTCTGC	0.597													5	6					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48626890	48626890	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48626890G>A	uc003ctz.2	-	17	2185	c.2184C>T	c.(2182-2184)TCC>TCT	p.S728S		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	728	Nonhelical region (NC1).|Fibronectin type-III 6.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AAACCAACTGGGATTTCTCTG	0.622													29	58					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48628970	48628970	+	Silent	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48628970C>G	uc003ctz.2	-	12	1564	c.1563G>C	c.(1561-1563)GGG>GGC	p.G521G		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	521	Fibronectin type-III 4.|Nonhelical region (NC1).				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GCACCCGCTGCCCGGGCAGCT	0.662													16	120					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48663735	48663735	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48663735G>A	uc003cuf.1	-	55	12339	c.12339C>T	c.(12337-12339)ACC>ACT	p.T4113T	SLC26A6_uc003cug.2_Silent_p.T706T|SLC26A6_uc003cuh.2_Silent_p.T727T|SLC26A6_uc010hke.2_Silent_p.T559T|SLC26A6_uc003cuk.2_Silent_p.T619T|SLC26A6_uc003cui.2_Silent_p.T726T|SLC26A6_uc003cuj.2_Silent_p.T708T|SLC26A6_uc011bbp.1_Silent_p.T691T	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GATGCTTCTTGGTGATGGATG	0.582													13	79					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48669750	48669750	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48669750G>A	uc003cuf.1	-	41	10728	c.10728C>T	c.(10726-10728)ATC>ATT	p.I3576I	SLC26A6_uc003cug.2_Silent_p.I150I|SLC26A6_uc003cuh.2_Silent_p.I171I|SLC26A6_uc010hke.2_Silent_p.I22I|SLC26A6_uc003cuk.2_Intron|SLC26A6_uc003cui.2_Silent_p.I171I|SLC26A6_uc003cuj.2_Silent_p.I171I|SLC26A6_uc011bbp.1_Intron	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CTGTCTCATTGATCATGGAGT	0.592													26	27					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48684207	48684207	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48684207G>A	uc003cul.2	-	21	7565	c.7284C>T	c.(7282-7284)CGC>CGT	p.R2428R	CELSR3_uc003cuf.1_Silent_p.R2498R|CELSR3_uc010hkf.2_5'Flank|CELSR3_uc010hkg.2_Silent_p.R411R	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2428	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGGCACCTCGGCGTTCTGCCT	0.597													8	30					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48685383	48685383	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48685383G>A	uc003cul.2	-	20	7301	c.7020C>T	c.(7018-7020)GCC>GCT	p.A2340A	CELSR3_uc003cuf.1_Silent_p.A2410A|CELSR3_uc010hkg.2_Silent_p.A323A	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2340	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGTAGCGACGGGCCCCCCGGG	0.632													43	150					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48698262	48698262	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48698262G>A	uc003cul.2	-	1	2087	c.1806C>T	c.(1804-1806)ATC>ATT	p.I602I	CELSR3_uc003cuf.1_Silent_p.I672I	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	602	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCACCACCTGGATCTCGCCAG	0.607													8	23					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48699764	48699765	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48699764_48699765GG>AA	uc003cul.2	-	1	584_585	c.303_304CC>TT	c.(301-306)CCCCCT>CCTTCT	p.P102S	CELSR3_uc003cuf.1_Missense_Mutation_p.P172S	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	102	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGCTGCTCAGGGGGCCCTCGAC	0.658													65	160					0	0	1	0	0
NCKIPSD	51517	broad.mit.edu	37	3	48716111	48716111	+	Silent	SNP	G	A	A	rs34283811		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48716111G>A	uc003cun.2	-	12	1945	c.1851C>T	c.(1849-1851)TTC>TTT	p.F617F	NCKIPSD_uc003cum.2_Silent_p.F610F	NM_016453	NP_057537	Q9NZQ3	SPN90_HUMAN	NCK interacting protein with SH3 domain isoform	617					cytoskeleton organization|NLS-bearing substrate import into nucleus|signal transduction	intermediate filament|nucleus	cytoskeletal protein binding|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CGTCCTGCAGGAACTTGAGGA	0.572													49	93					0	0	1	0	0
IP6K2	51447	broad.mit.edu	37	3	48727117	48727117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:48727117G>A	uc003cup.2	-	5	878	c.634C>T	c.(634-636)CGC>TGC	p.R212C	IP6K2_uc003cuq.2_Missense_Mutation_p.R212C	NM_001005909	NP_001005909	Q9UHH9	IP6K2_HUMAN	inositol hexaphosphate kinase 2 isoform a	212					negative regulation of cell growth|phosphatidylinositol phosphorylation|positive regulation of apoptosis|type I interferon-mediated signaling pathway	intermediate filament cytoskeleton|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						ACCTCGTAGCGGGAAGTCAGG	0.478													23	45					0	0	1	0	0
ARIH2	10425	broad.mit.edu	37	3	49006032	49006032	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49006032C>T	uc003cvb.2	+	7	916	c.604C>T	c.(604-606)CCC>TCC	p.P202S	ARIH2_uc003cvc.2_Missense_Mutation_p.P202S|ARIH2_uc003cvf.2_Missense_Mutation_p.P120S|ARIH2_uc010hkl.2_Missense_Mutation_p.P202S	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	202					developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		TCCATTGCTTCCCAATGAAGA	0.478													60	152					0	0	1	0	0
ARIH2	10425	broad.mit.edu	37	3	49012254	49012254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49012254C>T	uc003cvb.2	+	10	1205	c.893C>T	c.(892-894)CCC>CTC	p.P298L	ARIH2_uc003cvc.2_Missense_Mutation_p.P298L|ARIH2_uc003cvf.2_Missense_Mutation_p.P216L|ARIH2_uc010hkl.2_Missense_Mutation_p.P298L	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	298	RING-type 2.				developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding	p.P298P(1)		ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		CCTCAGTGTCCCAAGTGCAAC	0.498													28	77					0	0	1	0	0
P4HTM	54681	broad.mit.edu	37	3	49042403	49042403	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49042403C>T	uc003cvg.2	+	6	1346	c.997C>T	c.(997-999)CCT>TCT	p.P333S	P4HTM_uc003cvh.2_Missense_Mutation_p.P333S|WDR6_uc011bbx.1_5'Flank|WDR6_uc003cvj.2_5'Flank|WDR6_uc011bby.1_5'Flank|WDR6_uc010hkn.2_5'Flank|WDR6_uc011bbz.1_5'Flank	NM_177939	NP_808808	Q9NXG6	P4HTM_HUMAN	hypoxia-inducible factor prolyl 4-hydroxylase	333	Lumenal (Potential).|Fe2OG dioxygenase.					endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)|pancreas(1)	2					Vitamin C(DB00126)	GGACAGTGGGCCTGTGTACCC	0.612													25	56					0	0	1	0	0
WDR6	11180	broad.mit.edu	37	3	49049243	49049243	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49049243C>T	uc003cvj.2	+	2	504	c.366C>T	c.(364-366)CTC>CTT	p.L122L	WDR6_uc011bbx.1_Intron|WDR6_uc011bby.1_Intron|WDR6_uc010hkn.2_Silent_p.L66L|WDR6_uc011bbz.1_Silent_p.L41L	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	92	WD 1.				cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		GCAAGGGACTCCGAGTTGTGA	0.557													60	155					0	0	1	0	0
QRICH1	54870	broad.mit.edu	37	3	49094946	49094946	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49094946G>A	uc010hkq.2	-	4	983	c.687C>T	c.(685-687)CCC>CCT	p.P229P	QRICH1_uc003cvu.2_Silent_p.P229P|QRICH1_uc003cvv.2_Silent_p.P229P	NM_198880	NP_942581	Q2TAL8	QRIC1_HUMAN	glutamine-rich 1	229	Gln-rich.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.88e-05)|Kidney(197;0.00239)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		CCCCTTCCCGGGGTGAGCCCT	0.632													24	45					0	0	1	0	0
QARS	5859	broad.mit.edu	37	3	49137072	49137072	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49137072G>A	uc003cvx.2	-	16	1402	c.1397C>T	c.(1396-1398)TCC>TTC	p.S466F	QARS_uc011bcc.1_5'Flank|QARS_uc011bcd.1_Missense_Mutation_p.S321F|QARS_uc003cvy.2_Missense_Mutation_p.S321F|QARS_uc011bce.1_Missense_Mutation_p.S455F	NM_005051	NP_005042	P47897	SYQ_HUMAN	glutaminyl-tRNA synthetase	466					glutaminyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|glutamine-tRNA ligase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)	L-Glutamine(DB00130)	CCAGAAGTAGGAAGAGCGTCT	0.567													5	56					0	0	1	0	0
USP19	10869	broad.mit.edu	37	3	49146461	49146461	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49146461G>A	uc003cwd.1	-	26	4048	c.3887C>T	c.(3886-3888)ACC>ATC	p.T1296I	USP19_uc003cwa.2_Intron|USP19_uc003cvz.3_Intron|USP19_uc011bcg.1_Intron|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Missense_Mutation_p.T1054I|USP19_uc011bch.1_Missense_Mutation_p.T1397I	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	1296	Helical; (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGCCGCCACGGTGCCCAGGAC	0.662													4	17					0	0	1	0	0
LAMB2	3913	broad.mit.edu	37	3	49165917	49165917	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49165917G>A	uc003cwe.2	-	15	2291	c.1992C>T	c.(1990-1992)ATC>ATT	p.I664I	LAMB2_uc003cwf.1_Silent_p.I664I	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	664	Laminin IV type B.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GAGTCCCTTGGATGCGATCAT	0.612													10	36					0	0	1	0	0
LAMB2	3913	broad.mit.edu	37	3	49167284	49167284	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49167284G>A	uc003cwe.2	-	10	1692	c.1393C>T	c.(1393-1395)CTG>TTG	p.L465L	LAMB2_uc003cwf.1_Silent_p.L465L	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	465	Laminin EGF-like 3.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CGGCAGCCCAGACGGTCACTG	0.572													30	119					0	0	1	0	0
CCDC36	339834	broad.mit.edu	37	3	49292849	49292849	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49292849G>A	uc003cwk.2	+	9	946	c.559G>A	c.(559-561)GAC>AAC	p.D187N	CCDC36_uc011bck.1_Missense_Mutation_p.D187N	NM_178173	NP_835467	Q8IYA8	CCD36_HUMAN	coiled-coil domain containing 36	187	Potential.									ovary(1)|kidney(1)	2				BRCA - Breast invasive adenocarcinoma(193;9.11e-05)|Kidney(197;0.00248)|KIRC - Kidney renal clear cell carcinoma(197;0.00262)		GGCCCAGAATGACCTGGTGTT	0.453													42	96					0	0	1	0	0
GPX1	2876	broad.mit.edu	37	3	49395053	49395053	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49395053G>A	uc011bcl.1	-	3	460	c.380C>T	c.(379-381)GCC>GTC	p.A127V	GPX1_uc011bcm.1_3'UTR	NM_000581	NP_000572	P07203	GPX1_HUMAN	glutathione peroxidase 1 isoform 1	127					anti-apoptosis|cell redox homeostasis|glutathione metabolic process|heart contraction|hydrogen peroxide catabolic process|negative regulation of caspase activity|purine base metabolic process|purine nucleotide catabolic process|regulation of gene expression, epigenetic|regulation of mammary gland epithelial cell proliferation|regulation of proteasomal protein catabolic process|release of cytochrome c from mitochondria|response to selenium ion|UV protection	cytosol|mitochondrion	endopeptidase inhibitor activity|glutathione peroxidase activity|SH3 domain binding			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Glutathione(DB00143)	CCGCAGGAAGGCGAAGAGAGG	0.632													27	51					0	0	1	0	0
GPX1	2876	broad.mit.edu	37	3	49395100	49395100	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49395100G>A	uc011bcl.1	-	3	413	c.333C>T	c.(331-333)CTC>CTT	p.L111L	GPX1_uc011bcm.1_3'UTR	NM_000581	NP_000572	P07203	GPX1_HUMAN	glutathione peroxidase 1 isoform 1	111					anti-apoptosis|cell redox homeostasis|glutathione metabolic process|heart contraction|hydrogen peroxide catabolic process|negative regulation of caspase activity|purine base metabolic process|purine nucleotide catabolic process|regulation of gene expression, epigenetic|regulation of mammary gland epithelial cell proliferation|regulation of proteasomal protein catabolic process|release of cytochrome c from mitochondria|response to selenium ion|UV protection	cytosol|mitochondrion	endopeptidase inhibitor activity|glutathione peroxidase activity|SH3 domain binding			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Glutathione(DB00143)	ACTTCTCGAAGAGCATGAAGT	0.617													14	87					0	0	1	0	0
DAG1	1605	broad.mit.edu	37	3	49569672	49569672	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49569672C>T	uc003cxc.3	+	3	2146	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	576	Peptidase S72.				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		ACGAGTATTTCATGCATGCCA	0.597													28	36					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49662672	49662672	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49662672C>T	uc003cxe.3	+	2	603	c.489C>T	c.(487-489)CCC>CCT	p.P163P		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	163					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AGATCGCCCCCCTTCCCAGCA	0.612													32	88					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49688113	49688113	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49688113C>T	uc003cxe.3	+	4	1701	c.1587C>T	c.(1585-1587)ACC>ACT	p.T529T		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	529					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GAGAGCCGACCCCCCTGCCGC	0.627													72	161					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49688217	49688217	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49688217C>T	uc003cxe.3	+	4	1805	c.1691C>T	c.(1690-1692)CCT>CTT	p.P564L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	564					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CTGGGCCAGCCTTCAGGCCCC	0.687													28	208					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49690103	49690103	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49690103G>A	uc003cxe.3	+	5	3228	c.3114G>A	c.(3112-3114)GAG>GAA	p.E1038E		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1038	Potential.				synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCACCATCGAGGACTCCTCAG	0.662													17	26					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49691586	49691586	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49691586G>A	uc003cxe.3	+	5	4711	c.4597G>A	c.(4597-4599)GGT>AGT	p.G1533S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1533					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGTAGCCCAGGGTACACAAAC	0.612													39	92					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49697935	49697935	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49697935C>T	uc003cxe.3	+	6	8771	c.8657C>T	c.(8656-8658)CCC>CTC	p.P2886L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2886					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GCGTTGCCACCCAACAGCCTG	0.657													40	141					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49699167	49699167	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49699167G>A	uc003cxe.3	+	6	10003	c.9889G>A	c.(9889-9891)GAT>AAT	p.D3297N		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3297					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGACTCATACGATCCCCGCGG	0.612													23	58					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49700328	49700328	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49700328G>A	uc003cxe.3	+	7	10851	c.10737G>A	c.(10735-10737)GAG>GAA	p.E3579E		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3579					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TGGGCCAGGAGGAGACGGACT	0.612													25	75					0	0	1	0	0
MST1	4485	broad.mit.edu	37	3	49726071	49726071	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49726071G>A	uc003cxg.2	-	1	126	c.54C>T	c.(52-54)CTC>CTT	p.L18L	MST1_uc011bcs.1_Silent_p.L18L|MST1_uc010hkx.2_5'UTR|MST1_uc011bct.1_Silent_p.L18L|MST1_uc011bcu.1_RNA|RNF123_uc003cxh.2_5'Flank	NM_020998	NP_066278	P26927	HGFL_HUMAN	macrophage stimulating 1 (hepatocyte growth	4					proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GCAGGAGTGGGAGCCACCCCA	0.612													8	15					0	0	1	0	0
RNF123	63891	broad.mit.edu	37	3	49736512	49736512	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49736512C>T	uc003cxh.2	+	10	824	c.738C>T	c.(736-738)GCC>GCT	p.A246A	RNF123_uc010hky.1_5'Flank|RNF123_uc003cxi.2_5'Flank	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	246	B30.2/SPRY.					cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		AGTCCGTGGCCTTCAACTTTG	0.582													29	97					0	0	1	0	0
UBA7	7318	broad.mit.edu	37	3	49848490	49848490	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49848490C>T	uc003cxr.2	-	10	1328	c.1157G>A	c.(1156-1158)TGG>TAG	p.W386*		NM_003335	NP_003326	P41226	UBA7_HUMAN	ubiquitin-like modifier activating enzyme 7	386	2 approximate repeats.				ISG15-protein conjugation|negative regulation of type I interferon production	cytosol	ATP binding|ISG15 activating enzyme activity|ligase activity			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(193;3.58e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		AAAGTAAAGCCACTGGTCCAG	0.602													15	41					0	0	1	0	0
UBA7	7318	broad.mit.edu	37	3	49848734	49848734	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49848734C>T	uc003cxr.2	-	9	1265	c.1094G>A	c.(1093-1095)GGT>GAT	p.G365D		NM_003335	NP_003326	P41226	UBA7_HUMAN	ubiquitin-like modifier activating enzyme 7	365	2 approximate repeats.			GVLSPMVAMLGAVAAQEVLKAISR -> RCLEPMVACWVSS CPGSAEGNLQ (in Ref. 1; AAA75388 and 2; AAG49557).	ISG15-protein conjugation|negative regulation of type I interferon production	cytosol	ATP binding|ISG15 activating enzyme activity|ligase activity			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(193;3.58e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		AGCTACTGCACCCAGCATGGC	0.517													22	59					0	0	1	0	0
TRAIP	10293	broad.mit.edu	37	3	49866927	49866927	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49866927G>A	uc003cxs.1	-	14	1357	c.1251C>T	c.(1249-1251)TTC>TTT	p.F417F	TRAIP_uc010hla.1_Silent_p.F318F	NM_005879	NP_005870	Q9BWF2	TRAIP_HUMAN	TRAF interacting protein	417	Interaction with CYLD.				cell proliferation|induction of apoptosis	perinuclear region of cytoplasm	protein binding|zinc ion binding			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CGAGCCCATCGAAGCCTGTCC	0.562													20	50					0	0	1	0	0
TRAIP	10293	broad.mit.edu	37	3	49867482	49867482	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49867482G>A	uc003cxs.1	-	12	1163	c.1057C>T	c.(1057-1059)CCC>TCC	p.P353S	TRAIP_uc010hla.1_Missense_Mutation_p.P254S	NM_005879	NP_005870	Q9BWF2	TRAIP_HUMAN	TRAF interacting protein	353	Interaction with CYLD.				cell proliferation|induction of apoptosis	perinuclear region of cytoplasm	protein binding|zinc ion binding			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ATCTTCTTGGGGACATCCTGA	0.537													35	111					0	0	1	0	0
TRAIP	10293	broad.mit.edu	37	3	49869412	49869412	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49869412G>A	uc003cxs.1	-	11	1080	c.974C>T	c.(973-975)CCC>CTC	p.P325L	TRAIP_uc010hla.1_Missense_Mutation_p.P226L	NM_005879	NP_005870	Q9BWF2	TRAIP_HUMAN	TRAF interacting protein	325	Interaction with CYLD.				cell proliferation|induction of apoptosis	perinuclear region of cytoplasm	protein binding|zinc ion binding			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCGGGCTGGGGGAGTATCCAC	0.547													29	67					0	0	1	0	0
CAMKV	79012	broad.mit.edu	37	3	49896972	49896972	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49896972C>T	uc003cxt.1	-	11	1478	c.1285G>A	c.(1285-1287)GCC>ACC	p.A429T	TRAIP_uc003cxs.1_5'Flank|TRAIP_uc010hla.1_5'Flank|TRAIP_uc011bcx.1_5'Flank|CAMKV_uc011bcy.1_Missense_Mutation_p.A354T|CAMKV_uc003cxv.1_Missense_Mutation_p.A401T|CAMKV_uc003cxw.1_Missense_Mutation_p.A261T|CAMKV_uc003cxx.1_Missense_Mutation_p.A261T|CAMKV_uc003cxu.2_Missense_Mutation_p.A398T|CAMKV_uc011bcz.1_Missense_Mutation_p.A361T|CAMKV_uc011bda.1_Missense_Mutation_p.A355T	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	429	Ala-rich.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CCATCAGTGGCTGGAGTAGCG	0.632													40	72					0	0	1	0	0
CAMKV	79012	broad.mit.edu	37	3	49898258	49898258	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49898258C>T	uc003cxt.1	-	8	859	c.666G>A	c.(664-666)GAG>GAA	p.E222E	CAMKV_uc011bcy.1_Silent_p.E147E|CAMKV_uc003cxv.1_Silent_p.E194E|CAMKV_uc003cxw.1_Silent_p.E54E|CAMKV_uc003cxx.1_Silent_p.E54E|CAMKV_uc003cxu.2_Silent_p.E222E|CAMKV_uc011bcz.1_Silent_p.E185E|CAMKV_uc011bda.1_Silent_p.E179E|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	222	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CTTCCACCTCCTCATAGAAAG	0.488													53	134					0	0	1	0	0
CAMKV	79012	broad.mit.edu	37	3	49898437	49898437	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49898437C>T	uc003cxt.1	-	7	770	c.577G>A	c.(577-579)GGC>AGC	p.G193S	CAMKV_uc011bcy.1_Missense_Mutation_p.G118S|CAMKV_uc003cxv.1_Intron|CAMKV_uc003cxw.1_Missense_Mutation_p.G25S|CAMKV_uc003cxx.1_Missense_Mutation_p.G25S|CAMKV_uc003cxu.2_Missense_Mutation_p.G193S|CAMKV_uc011bcz.1_Missense_Mutation_p.G156S|CAMKV_uc011bda.1_Missense_Mutation_p.G150S|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	193	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CGCTGCCGGCCTACCACCTCT	0.572													16	34					0	0	1	0	0
CAMKV	79012	broad.mit.edu	37	3	49898976	49898976	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49898976C>T	uc003cxt.1	-	5	530	c.337G>A	c.(337-339)GAC>AAC	p.D113N	CAMKV_uc011bcy.1_Missense_Mutation_p.D38N|CAMKV_uc003cxv.1_Missense_Mutation_p.D113N|CAMKV_uc003cxw.1_5'UTR|CAMKV_uc003cxx.1_5'UTR|CAMKV_uc003cxu.2_Missense_Mutation_p.D113N|CAMKV_uc011bcz.1_Missense_Mutation_p.D76N|CAMKV_uc011bda.1_Intron|CAMKV_uc011bdb.1_Intron	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	113	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		TAGCCCTGGTCCAGGATCCAG	0.612													20	60					0	0	1	0	0
MST1R	4486	broad.mit.edu	37	3	49932749	49932749	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:49932749G>A	uc003cxy.3	-	14	3386	c.3122C>T	c.(3121-3123)TCC>TTC	p.S1041F	MST1R_uc011bdc.1_5'UTR	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	1041	Cytoplasmic (Potential).				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		TTCACTATCGGAGAAGGATGC	0.562													45	108					0	0	1	0	0
RBM6	10180	broad.mit.edu	37	3	50099460	50099460	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50099460C>T	uc003cyc.2	+	15	2638	c.2505C>T	c.(2503-2505)CCC>CCT	p.P835P	RBM6_uc010hlc.1_Silent_p.P354P|RBM6_uc003cyd.2_Silent_p.P313P|RBM6_uc003cye.2_Silent_p.P313P|RBM6_uc011bdi.1_Silent_p.P177P|RBM6_uc010hld.1_RNA|RBM6_uc010hle.1_RNA|RBM6_uc010hlf.1_RNA	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	835					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		AAAAAAAACCCACCAGTCAAG	0.418													19	63					0	0	1	0	0
RBM5	10181	broad.mit.edu	37	3	50144242	50144242	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50144242C>T	uc003cyg.2	+	11	1046	c.898C>T	c.(898-900)CCT>TCT	p.P300S	RBM5_uc011bdj.1_Missense_Mutation_p.P244S|RBM5_uc011bdk.1_Missense_Mutation_p.P128S	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	300	RRM 2.				apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCTCCATCCTCCTTTGAAAAT	0.388													33	74					0	0	1	0	0
RBM5	10181	broad.mit.edu	37	3	50155850	50155850	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50155850C>T	uc003cyg.2	+	25	2557	c.2409C>T	c.(2407-2409)GTC>GTT	p.V803V	RBM5_uc011bdk.1_Silent_p.V631V|RBM5_uc003cyh.2_Silent_p.V260V|uc003cyi.1_Intron	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	803	Required for interaction with U2AF2.				apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AAGATGCTGTCCGGAAAGCCA	0.478													6	41					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50220340	50220340	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50220340G>A	uc003cyj.2	+	10	1105	c.907G>A	c.(907-909)GAT>AAT	p.D303N	SEMA3F_uc003cyk.2_Missense_Mutation_p.D272N	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	303	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		CCCCCAGAACGATGACGGTGG	0.617													5	21					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50220961	50220961	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50220961C>T	uc003cyj.2	+	12	1395	c.1197C>T	c.(1195-1197)CCC>CCT	p.P399P	SEMA3F_uc003cyk.2_Silent_p.P368P	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	399	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		AGTGGATGCCCTTCTCAGGGA	0.592													31	69					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50222931	50222931	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50222931G>A	uc003cyj.2	+	14	1710	c.1512G>A	c.(1510-1512)GAG>GAA	p.E504E	SEMA3F_uc003cyk.2_Silent_p.E473E	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	504	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		AGGAGTTGGAGGAGCTCATGC	0.647													8	23					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50225432	50225432	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50225432G>A	uc003cyj.2	+	19	2440	c.2242G>A	c.(2242-2244)GGT>AGT	p.G748S	SEMA3F_uc003cyk.2_Missense_Mutation_p.G717S	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	748					axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		GTACTGCCAGGGTTACTGGCG	0.701													9	14					0	0	1	0	0
SLC38A3	10991	broad.mit.edu	37	3	50252883	50252883	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50252883G>A	uc003cyn.3	+	5	506	c.365G>A	c.(364-366)GGG>GAG	p.G122E	SLC38A3_uc011bdl.1_Intron|SLC38A3_uc011bdm.1_Missense_Mutation_p.G53E	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	122	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	AAGTCCTCAGGGGTCGTGGGT	0.582													18	87					0	0	1	0	0
SLC38A3	10991	broad.mit.edu	37	3	50252887	50252887	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50252887C>T	uc003cyn.3	+	5	510	c.369C>T	c.(367-369)GTC>GTT	p.V123V	SLC38A3_uc011bdl.1_Intron|SLC38A3_uc011bdm.1_Silent_p.V54V	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	123	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	CCTCAGGGGTCGTGGGTGAGC	0.582													26	74					0	0	1	0	0
SLC38A3	10991	broad.mit.edu	37	3	50253064	50253064	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50253064C>T	uc003cyn.3	+	6	603	c.462C>T	c.(460-462)ATC>ATT	p.I154I	SLC38A3_uc011bdl.1_Silent_p.I129I|SLC38A3_uc011bdm.1_Silent_p.I85I	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	154	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity	p.I154T(1)		breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	TCCAGAACATCGGAGGTAAGA	0.657													5	55					0	0	1	0	0
GNAI2	2771	broad.mit.edu	37	3	50293694	50293694	+	Missense_Mutation	SNP	C	T	T	rs137853226		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50293694C>T	uc003cyq.1	+	5	656	c.535C>T	c.(535-537)CGC>TGC	p.R179C	GNAI2_uc003cyo.1_Missense_Mutation_p.R163C|GNAI2_uc003cyp.1_Missense_Mutation_p.R163C|GNAI2_uc010hlg.1_Missense_Mutation_p.R98C|GNAI2_uc011bdn.1_Missense_Mutation_p.R142C|GNAI2_uc003cyr.1_Missense_Mutation_p.R98C	NM_002070	NP_002061	P04899	GNAI2_HUMAN	guanine nucleotide binding protein (G protein),	179	GTP (By similarity).				adenosine receptor signaling pathway|cell cycle|cell division|gamma-aminobutyric acid signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|platelet activation|response to nutrient|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000288)|KIRC - Kidney renal clear cell carcinoma(197;0.00571)|Kidney(197;0.00651)		GCTACGGACCCGCGTAAAGAC	0.592													17	41					0	0	1	0	0
NAT6	24142	broad.mit.edu	37	3	50334221	50334222	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50334221_50334222GG>AA	uc003czi.2	-	2	776_777	c.673_674CC>TT	c.(673-675)CCA>TTA	p.P225L	HYAL3_uc003czc.1_Intron|HYAL3_uc003czd.1_Intron|HYAL3_uc003cze.1_Intron|HYAL3_uc003czf.1_Intron|HYAL3_uc003czg.1_Intron|NAT6_uc003czj.2_Missense_Mutation_p.P247L|NAT6_uc003czk.3_Missense_Mutation_p.P225L|NAT6_uc003czl.1_Missense_Mutation_p.P225L	NM_012191	NP_036323	Q93015	NAT6_HUMAN	N-acetyltransferase 6	225						cytoplasm	N-acetyltransferase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		AGTCAGGTTTGGGGCCTTCCTG	0.658													20	43					0	0	1	0	0
NAT6	24142	broad.mit.edu	37	3	50334496	50334496	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50334496G>A	uc003czi.2	-	2	502	c.399C>T	c.(397-399)CCC>CCT	p.P133P	HYAL3_uc003czc.1_Intron|HYAL3_uc003czd.1_Intron|HYAL3_uc003cze.1_Intron|HYAL3_uc003czf.1_Intron|HYAL3_uc003czg.1_Intron|NAT6_uc003czj.2_Silent_p.P155P|NAT6_uc003czk.3_Silent_p.P133P|NAT6_uc003czl.1_Silent_p.P133P	NM_012191	NP_036323	Q93015	NAT6_HUMAN	N-acetyltransferase 6	133	N-acetyltransferase.					cytoplasm	N-acetyltransferase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		AGAGGCTCTGGGGCTGGTTCA	0.682													7	18					0	0	1	0	0
TUSC2	11334	broad.mit.edu	37	3	50363574	50363574	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50363574G>A	uc003czy.1	-	3	458	c.311C>T	c.(310-312)CCT>CTT	p.P104L	TUSC2_uc003czz.1_RNA	NM_007275	NP_009206	O75896	TUSC2_HUMAN	tumor suppressor candidate 2	104					cell cycle|cell proliferation|cell-cell signaling		protein binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GAGGATCACAGGGAAATCCAC	0.577													3	12					0	0	1	0	0
ZMYND10	51364	broad.mit.edu	37	3	50380626	50380626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50380626C>T	uc003dag.1	-	6	668	c.522G>A	c.(520-522)AAG>AAA	p.K174K	RASSF1_uc003dad.1_5'Flank|RASSF1_uc003dae.1_5'Flank|RASSF1_uc010hlk.1_5'Flank|RASSF1_uc003daf.1_5'Flank|RASSF1_uc011bdq.1_5'Flank|ZMYND10_uc010hll.1_Silent_p.K174K|ZMYND10_uc003dah.1_Silent_p.K95K|ZMYND10_uc010hlm.1_Silent_p.K131K	NM_015896	NP_056980	O75800	ZMY10_HUMAN	zinc finger, MYND domain-containing 10	174						cytoplasm	protein binding|zinc ion binding			lung(4)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GCTCTGCCTGCTTCTGCAGCT	0.577										TSP Lung(30;0.18)			19	39					0	0	1	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50405101	50405101	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50405101C>T	uc003daq.2	-	27	2328	c.2290G>A	c.(2290-2292)GGT>AGT	p.G764S	CACNA2D2_uc003dap.2_Missense_Mutation_p.G757S|CACNA2D2_uc003dao.2_5'Flank	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	764	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	GTGATGCCACCGTCTGTGGCA	0.642													19	36					0	0	1	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50405665	50405665	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50405665C>T	uc003daq.2	-	25	2106	c.2068G>A	c.(2068-2070)GAG>AAG	p.E690K	CACNA2D2_uc003dap.2_Missense_Mutation_p.E683K|CACNA2D2_uc003dao.2_5'Flank	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	690	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	TTGCAGTACTCTCTAGGGATG	0.537													52	134					0	0	1	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50413309	50413309	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50413309G>A	uc003daq.2	-	20	1814	c.1776C>T	c.(1774-1776)ATC>ATT	p.I592I	CACNA2D2_uc003dap.2_Silent_p.I592I	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	592	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	TGCTCCGACGGATCTGGAAGG	0.398													9	94					0	0	1	0	0
C3orf18	51161	broad.mit.edu	37	3	50602982	50602982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:50602982G>A	uc003das.2	-	2	600	c.149C>T	c.(148-150)CCT>CTT	p.P50L	C3orf18_uc003dar.2_Missense_Mutation_p.P50L|C3orf18_uc011bdr.1_Intron|C3orf18_uc010hlo.2_Missense_Mutation_p.P50L|C3orf18_uc010hlp.2_Intron|C3orf18_uc003dat.2_Missense_Mutation_p.P50L	NM_016210	NP_057294	Q9UK00	CC018_HUMAN	hypothetical protein LOC51161	50						integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.0175)|Kidney(197;0.0207)		AGCTGCATCAGGGATTCTGGT	0.607													15	38					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51265502	51265502	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51265502G>A	uc011bds.1	+	17	1653	c.1630G>A	c.(1630-1632)GAG>AAG	p.E544K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	544	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TGATATTCACGAGCTTTATGT	0.478													18	31					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51370588	51370588	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51370588G>A	uc011bds.1	+	35	3539	c.3516_splice	c.e35-1	p.S1172_splice		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3							cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TCCACCAATAGCCTGCTGGAG	0.522													20	80					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51387787	51387787	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51387787C>T	uc011bds.1	+	40	4094	c.4071C>T	c.(4069-4071)GTC>GTT	p.V1357V		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1357	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TCTTTCGGGTCGGCTTCTATG	0.438													49	115					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51387809	51387809	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51387809C>T	uc011bds.1	+	40	4116	c.4093C>T	c.(4093-4095)CCT>TCT	p.P1365S		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1365	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAGGAAGTTTCCTTTCTTTCT	0.428													45	103					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51400016	51400016	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51400016C>T	uc011bds.1	+	49	5227	c.5204C>T	c.(5203-5205)TCG>TTG	p.S1735L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1735	Ser-rich.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GTTCTGTCCTCGTCCCAGGCA	0.562													17	47					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51413243	51413243	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51413243C>T	uc011bds.1	+	51	5500	c.5477C>T	c.(5476-5478)CCC>CTC	p.P1826L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1826						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TGCAGTGATCCCAATCTGTCT	0.532													38	92					0	0	1	0	0
RAD54L2	23132	broad.mit.edu	37	3	51673920	51673920	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51673920C>T	uc011bdt.1	+	13	2261	c.2136C>T	c.(2134-2136)TAC>TAT	p.Y712Y	RAD54L2_uc003dbh.2_Silent_p.Y303Y|RAD54L2_uc011bdu.1_Silent_p.Y406Y|RAD54L2_uc003dbj.2_Silent_p.Y38Y	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	712						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		TGACTAATTACCAGACTGGAG	0.458													8	24					0	0	1	0	0
RAD54L2	23132	broad.mit.edu	37	3	51679045	51679045	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51679045G>A	uc011bdt.1	+	16	2581	c.2456G>A	c.(2455-2457)GGA>GAA	p.G819E	RAD54L2_uc003dbh.2_Missense_Mutation_p.G408E|RAD54L2_uc011bdu.1_Missense_Mutation_p.G513E|RAD54L2_uc003dbj.2_Missense_Mutation_p.G145E	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	819	Helicase C-terminal.					nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		TAAAGGGCCGGATGCTTGGGT	0.468													16	53					0	0	1	0	0
RAD54L2	23132	broad.mit.edu	37	3	51697238	51697238	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51697238C>T	uc011bdt.1	+	22	4331	c.4206C>T	c.(4204-4206)TCC>TCT	p.S1402S	RAD54L2_uc003dbh.2_Silent_p.S991S|RAD54L2_uc011bdu.1_Silent_p.S1096S|RAD54L2_uc003dbj.2_Silent_p.S728S	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1402						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		CTTTTCCTTCCCCTGTCTTGC	0.577													8	114					0	0	1	0	0
GRM2	2912	broad.mit.edu	37	3	51743021	51743021	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51743021C>T	uc010hlv.2	+	2	261	c.22C>T	c.(22-24)CTG>TTG	p.L8L	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	8					synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	GCTTGCGCTCCTGGCACTGCT	0.632													7	19					0	0	1	0	0
GRM2	2912	broad.mit.edu	37	3	51749298	51749298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51749298C>T	uc010hlv.2	+	4	1748	c.1509C>T	c.(1507-1509)CCC>CCT	p.P503P	GRM2_uc003dbo.3_5'UTR|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	503	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	GCAGTGAGCCCTGCCTCCAGA	0.622													14	25					0	0	1	0	0
GRM2	2912	broad.mit.edu	37	3	51749831	51749832	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51749831_51749832CC>AT	uc010hlv.2	+	4	2281_2282	c.2042_2043CC>AT	c.(2041-2043)GCC>GAT	p.A681D	GRM2_uc003dbo.3_Missense_Mutation_p.A63D|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	681	Helical; Name=4; (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	TCACAGGTGGCCATCTGCCTGG	0.673													9	40					0	0	1	0	0
IQCF1	132141	broad.mit.edu	37	3	51937085	51937085	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51937085C>T	uc003dbv.2	-	2	122	c.24G>A	c.(22-24)AAG>AAA	p.K8K	IQCF1_uc003dbq.3_RNA	NM_152397	NP_689610	Q8N6M8	IQCF1_HUMAN	IQ motif containing F1	8										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GTTCCTTCGTCTTTTGGGGCT	0.537													104	294					0	0	1	0	0
RRP9	9136	broad.mit.edu	37	3	51969369	51969369	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51969369G>A	uc003dbw.1	-	10	999	c.960C>T	c.(958-960)TTC>TTT	p.F320F		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	320	WD 4.				rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		GGTGGCCATAGAAGACAAGCT	0.652													15	26					0	0	1	0	0
PARP3	10039	broad.mit.edu	37	3	51979178	51979178	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:51979178C>T	uc003dby.2	+	6	1170	c.799C>T	c.(799-801)CAC>TAC	p.H267Y	PARP3_uc003dbz.2_Missense_Mutation_p.H274Y	NM_005485	NP_005476	Q9Y6F1	PARP3_HUMAN	poly (ADP-ribose) polymerase family, member 3	267	PARP alpha-helical.				DNA repair|protein ADP-ribosylation	centriole|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CAACTTCGGCCACAGCCAGCC	0.652													44	114					0	0	1	0	0
TLR9	54106	broad.mit.edu	37	3	52256720	52256720	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52256720C>T	uc003dda.1	-	2	2246	c.1612G>A	c.(1612-1614)GAG>AAG	p.E538K	TLR9_uc003ddb.2_Missense_Mutation_p.E635K	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	538	LRR 17.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	AATGAGTGCTCGTGGTAGAGG	0.602													12	42					0	0	1	0	0
PPM1M	132160	broad.mit.edu	37	3	52283280	52283280	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52283280G>A	uc003ddf.3	+	9	1059	c.694G>A	c.(694-696)GAG>AAG	p.E232K	PPM1M_uc011bed.1_Missense_Mutation_p.E393K|PPM1M_uc010hmd.2_Missense_Mutation_p.E232K|PPM1M_uc003ddg.3_Missense_Mutation_p.E181K|PPM1M_uc003ddh.3_Missense_Mutation_p.E103K			Q96MI6	PPM1M_HUMAN	RecName: Full=Protein phosphatase 1M;          EC=3.1.3.16; AltName: Full=Protein phosphatase 2C isoform eta;          Short=PP2C-eta;          Short=PP2CE;	232					protein dephosphorylation	nucleus	CTD phosphatase activity|manganese ion binding				0				BRCA - Breast invasive adenocarcinoma(193;2.4e-05)|Kidney(197;0.00171)|KIRC - Kidney renal clear cell carcinoma(197;0.00194)		ACTGTCCAACGAGCAGGTGGC	0.577													5	22					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52356612	52356612	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52356612C>T	uc011bef.1	+	2	415	c.154C>T	c.(154-156)CCT>TCT	p.P52S	DNAH1_uc003ddt.1_Missense_Mutation_p.P52S	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	52	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GTTGGGAAATCCTCCAGCCCT	0.607													17	54					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52382951	52382951	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52382951C>T	uc011bef.1	+	13	2415	c.2154C>T	c.(2152-2154)TCC>TCT	p.S718S	DNAH1_uc003ddt.1_Silent_p.S718S	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	718	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TGCTGGAGTCCGTGGGCCTTC	0.617													37	96					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52395327	52395327	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52395327C>T	uc011bef.1	+	29	5094	c.4833C>T	c.(4831-4833)CTC>CTT	p.L1611L		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1611	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTGACCAGCTCGACTTCATGG	0.607													5	15					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52400880	52400880	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52400880G>A	uc011bef.1	+	36	6003	c.5742G>A	c.(5740-5742)GAG>GAA	p.E1914E		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1914	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TGTACGGGGAGTTTGACCTCC	0.622													37	97					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52425320	52425320	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52425320C>T	uc011bef.1	+	62	10128	c.9867C>T	c.(9865-9867)GCC>GCT	p.A3289A	DNAH1_uc003ddv.2_Silent_p.A147A	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3354	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TAGACCCAGCCCTGGAGCCAG	0.627													6	15					0	0	1	0	0
BAP1	8314	broad.mit.edu	37	3	52439273	52439273	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52439273G>A	uc003ddx.2	-	11	1084	c.969C>T	c.(967-969)GCC>GCT	p.A323A	BAP1_uc003ddw.2_5'Flank|BAP1_uc010hmg.2_5'Flank|BAP1_uc010hmh.2_5'Flank	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	323					monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity	p.A323fs*71(1)|p.P324fs*7(1)		pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		TGTGGGATGGGGCTTGTGCGC	0.592			N|Mis|F|S|O		uveal melanoma|breast|NSCLC								59	136					0	0	1	0	0
BAP1	8314	broad.mit.edu	37	3	52441424	52441424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52441424C>T	uc003ddx.2	-	6	543	c.428G>A	c.(427-429)AGC>AAC	p.S143N	BAP1_uc010hmh.2_5'Flank	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	143					monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		CCTGGCATGGCTATTATGGGC	0.537			N|Mis|F|S|O		uveal melanoma|breast|NSCLC								31	91					0	0	1	0	0
PHF7	51533	broad.mit.edu	37	3	52454938	52454938	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52454938C>T	uc003ddy.2	+	7	1239	c.433C>T	c.(433-435)CGC>TGC	p.R145C	PHF7_uc003ddz.2_Missense_Mutation_p.R145C	NM_016483	NP_057567	Q9BWX1	PHF7_HUMAN	PHD finger protein 7 isoform 1	145	PHD-type; atypical.					nucleus	zinc ion binding			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;1.71e-05)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)|OV - Ovarian serous cystadenocarcinoma(275;0.0275)		TGACAAACATCGCCCAACACA	0.493													38	94					0	0	1	0	0
PHF7	51533	broad.mit.edu	37	3	52457136	52457136	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52457136C>T	uc003ddy.2	+	11	1755	c.949C>T	c.(949-951)CCT>TCT	p.P317S	PHF7_uc003ddz.2_Missense_Mutation_p.P278S	NM_016483	NP_057567	Q9BWX1	PHF7_HUMAN	PHD finger protein 7 isoform 1	317						nucleus	zinc ion binding			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;1.71e-05)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)|OV - Ovarian serous cystadenocarcinoma(275;0.0275)		AGGGGACATCCCTTGCTGCAG	0.527													38	87					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52472065	52472066	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52472065_52472066GG>AA	uc003dea.1	-	14	1659_1660	c.1659_1660CC>TT	c.(1657-1662)AGCCTT>AGTTTT	p.L554F		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	554					multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		CGCTTGCCAAGGCTGGGGCGGT	0.668													9	32					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52472087	52472087	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52472087G>A	uc003dea.1	-	14	1638	c.1638C>T	c.(1636-1638)TCC>TCT	p.S546S		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	546					multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		AGTGGGTACAGGAGGCACCAT	0.677													10	29					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52475669	52475669	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52475669C>T	uc003dea.1	-	6	588	c.588G>A	c.(586-588)CTG>CTA	p.L196L		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	196	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		CCTCTCGCCCCAGGAAGTCAG	0.657													6	78					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52476875	52476875	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52476875G>A	uc003dea.1	-	2	164	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	55	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GAGGTTCAGGGAGCCCTGGGG	0.622													5	9					0	0	1	0	0
NISCH	11188	broad.mit.edu	37	3	52514231	52514231	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52514231C>T	uc011beg.1	+	14	1520	c.1448C>T	c.(1447-1449)CCC>CTC	p.P483L	NISCH_uc003ded.3_Missense_Mutation_p.P483L|NISCH_uc003dec.1_Missense_Mutation_p.P483L	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	483	Necessary for homooligomerization and targeting to endosomes.|Interaction with PAK1 (By similarity).				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		TCAGCTGCCCCCTGCATCAGA	0.617													25	82					0	0	1	0	0
NISCH	11188	broad.mit.edu	37	3	52522226	52522226	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52522226C>T	uc011beg.1	+	17	2790	c.2718C>T	c.(2716-2718)ATC>ATT	p.I906I	NISCH_uc003ded.3_Silent_p.I906I|NISCH_uc003dee.3_Silent_p.I395I|NISCH_uc003deg.1_RNA|NISCH_uc003deh.3_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	906					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CCGCCGCCATCCCCTACTGGC	0.642													21	68					0	0	1	0	0
NISCH	11188	broad.mit.edu	37	3	52522557	52522557	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52522557C>T	uc011beg.1	+	17	3121	c.3049C>T	c.(3049-3051)CCC>TCC	p.P1017S	NISCH_uc003ded.3_Missense_Mutation_p.P1017S|NISCH_uc003dee.3_Missense_Mutation_p.P506S|NISCH_uc003deg.1_RNA|NISCH_uc003deh.3_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1017					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CGCCAAGACCCCCGGGACGGG	0.677													19	38					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52536041	52536041	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52536041G>A	uc003dej.2	+	4	425	c.351G>A	c.(349-351)GAG>GAA	p.E117E	STAB1_uc003dei.1_Silent_p.E117E	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	117	EGF-like 1.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GGGGCGCTGAGACCCCATGCA	0.637													14	43					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52539771	52539771	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52539771G>A	uc003dej.2	+	15	1743	c.1669G>A	c.(1669-1671)GGC>AGC	p.G557S	STAB1_uc003dei.1_Missense_Mutation_p.G557S	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	557	Extracellular (Potential).|FAS1 2.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CTTGCGTGACGGCCGCCTGAT	0.637													14	48					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52540748	52540749	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52540748_52540749GG>AA	uc003dej.2	+	18	1945_1946	c.1871_1872GG>AA	c.(1870-1872)AGG>AAA	p.R624K	STAB1_uc003dei.1_Missense_Mutation_p.R624K	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	624	Extracellular (Potential).|FAS1 2.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CCGCTGCAGAGGGTAGACGTGA	0.693													5	22					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52547965	52547965	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52547965C>T	uc003dej.2	+	32	3489	c.3415C>T	c.(3415-3417)CCT>TCT	p.P1139S		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1139	FAS1 4.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GGACTTGGTGCCTGCCTTCAG	0.642													53	121					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52548200	52548200	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52548200C>T	uc003dej.2	+	33	3591	c.3517C>T	c.(3517-3519)CTG>TTG	p.L1173L		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1173	FAS1 4.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CAACCGCTCCCTGGAGGCCCA	0.642													18	68					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52554257	52554257	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52554257G>A	uc003dej.2	+	52	5524	c.5450G>A	c.(5449-5451)CGA>CAA	p.R1817Q	STAB1_uc003dek.1_5'UTR|STAB1_uc003del.2_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1817	Extracellular (Potential).|FAS1 6.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GGCCCACTTCGAACCATGCAT	0.622													11	154					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52554926	52554926	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52554926G>A	uc003dej.2	+	55	5887	c.5813G>A	c.(5812-5814)AGG>AAG	p.R1938K	STAB1_uc003dek.1_5'UTR|STAB1_uc003del.2_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1938	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CTTTGGGGTAGGCCCCAAGGC	0.642													16	72					0	0	1	0	0
NT5DC2	64943	broad.mit.edu	37	3	52563345	52563345	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52563345G>A	uc003deo.2	-	2	551	c.127C>T	c.(127-129)CTG>TTG	p.L43L	NT5DC2_uc003dem.2_5'Flank|NT5DC2_uc003den.2_Silent_p.L80L|NT5DC2_uc010hmi.2_Silent_p.L80L|NT5DC2_uc010hmj.2_5'UTR	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	43							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		TCGGGGGGCAGGAGGTCTAGA	0.587													7	37					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52812419	52812419	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52812419C>T	uc003dfs.2	+	3	226	c.202C>T	c.(202-204)CAC>TAC	p.H68Y	ITIH1_uc010hmn.1_RNA	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	68	VIT.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		TCGCTTCGCCCACTATGTTGT	0.522													48	98					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52813459	52813459	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52813459G>A	uc003dfs.2	+	5	446	c.422G>A	c.(421-423)AGA>AAA	p.R141K	ITIH1_uc010hmn.1_RNA	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	141	VIT.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GCCTCGGGGAGAACTATGGAG	0.507													18	31					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52818464	52818464	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52818464G>A	uc003dfs.2	+	11	1402	c.1378G>A	c.(1378-1380)GAG>AAG	p.E460K	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.E61K|ITIH1_uc010hmo.1_Missense_Mutation_p.E14K	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	460	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GAGAATCTACGAGGACCATGA	0.582													24	55					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52822006	52822006	+	Silent	SNP	C	T	T	rs145881645	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52822006C>T	uc003dfs.2	+	17	1953	c.1929C>T	c.(1927-1929)TTC>TTT	p.F643F	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Silent_p.F244F|ITIH1_uc010hmo.1_Silent_p.F197F|ITIH1_uc003dfu.2_Silent_p.F9F	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	643	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		CATCAGCGTTCGTGCTGTCAG	0.612													38	121					0	0	1	0	0
ITIH3	3699	broad.mit.edu	37	3	52830625	52830625	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52830625G>A	uc003dfv.2	+	3	279	c.243G>A	c.(241-243)GTG>GTA	p.V81V	ITIH3_uc011bek.1_Silent_p.V81V	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	81	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		CCTTTGATGTGGAGCTGCCCA	0.567													8	21					0	0	1	0	0
ITIH3	3699	broad.mit.edu	37	3	52842628	52842628	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52842628C>T	uc003dfv.2	+	22	2640	c.2604C>T	c.(2602-2604)TTC>TTT	p.F868F	ITIH3_uc011bek.1_Silent_p.F676F	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	868					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		TCTGCTGGTTCGTCCACAACA	0.532													10	34					0	0	1	0	0
ITIH4	3700	broad.mit.edu	37	3	52852284	52852284	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52852284G>A	uc003dfz.2	-	19	2204	c.2168C>T	c.(2167-2169)ACC>ATC	p.T723I	ITIH4_uc011bel.1_Missense_Mutation_p.T423I|ITIH4_uc003dfy.2_Missense_Mutation_p.T557I|ITIH4_uc011bem.1_Missense_Mutation_p.T728I|ITIH4_uc011ben.1_Missense_Mutation_p.T693I	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	723					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		TGGGGTTTGGGTTGTCATGGT	0.597													11	65					0	0	1	0	0
ITIH4	3700	broad.mit.edu	37	3	52853451	52853451	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52853451G>A	uc003dfz.2	-	17	2071	c.2035C>T	c.(2035-2037)CCT>TCT	p.P679S	ITIH4_uc011bel.1_Missense_Mutation_p.P379S|ITIH4_uc003dfy.2_Missense_Mutation_p.P513S|ITIH4_uc011bem.1_Missense_Mutation_p.P684S|ITIH4_uc011ben.1_Missense_Mutation_p.P649S	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	679					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GCATGGTCAGGAACATCAGGA	0.602													27	87					0	0	1	0	0
ITIH4	3700	broad.mit.edu	37	3	52858009	52858009	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:52858009G>A	uc003dfz.2	-	10	1219	c.1183C>T	c.(1183-1185)CCC>TCC	p.P395S	ITIH4_uc011bel.1_Missense_Mutation_p.P125S|ITIH4_uc003dfy.2_Missense_Mutation_p.P259S|ITIH4_uc011bem.1_Missense_Mutation_p.P395S|ITIH4_uc011ben.1_Missense_Mutation_p.P395S	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	395	VWFA.				acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		ATGCTCCTGGGGTTAGTCTCC	0.542													15	50					0	0	1	0	0
RFT1	91869	broad.mit.edu	37	3	53157753	53157753	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53157753G>A	uc003dgj.2	-	3	307	c.253C>T	c.(253-255)CTG>TTG	p.L85L	RFT1_uc003dgk.2_Intron	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog	85	Helical; (Potential).				carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		AGCCACAGCAGGTTGAGGGTC	0.552													25	49					0	0	1	0	0
RFT1	91869	broad.mit.edu	37	3	53157793	53157793	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53157793G>A	uc003dgj.2	-	3	267	c.213C>T	c.(211-213)CTC>CTT	p.L71L	RFT1_uc003dgk.2_Intron	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog	71					carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		TGCCCCCACTGAGACATGCTC	0.537													19	46					0	0	1	0	0
PRKCD	5580	broad.mit.edu	37	3	53220037	53220037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53220037C>T	uc003dgl.2	+	12	1433	c.1080C>T	c.(1078-1080)TTC>TTT	p.F360F	PRKCD_uc003dgm.2_Silent_p.F360F	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	360	ATP (By similarity).|Protein kinase.				activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		AAGGCAGCTTCGGGAAGGTGA	0.607													12	39					0	0	1	0	0
PRKCD	5580	broad.mit.edu	37	3	53222763	53222763	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53222763G>A	uc003dgl.2	+	16	1796	c.1443G>A	c.(1441-1443)CTG>CTA	p.L481L	PRKCD_uc003dgm.2_Silent_p.L481L	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	481	Protein kinase.				activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		ATGTGCTGCTGGACCGGGATG	0.557													44	62					0	0	1	0	0
TKT	7086	broad.mit.edu	37	3	53263106	53263106	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53263106G>A	uc003dgo.2	-	10	1422	c.1312C>T	c.(1312-1314)CGG>TGG	p.R438W	TKT_uc003dgp.2_Missense_Mutation_p.R70W|TKT_uc011beo.1_Missense_Mutation_p.R391W|TKT_uc003dgq.2_Missense_Mutation_p.R438W|TKT_uc011beq.1_Missense_Mutation_p.R446W|TKT_uc011ber.1_Missense_Mutation_p.R240W|TKT_uc011bep.1_Missense_Mutation_p.R355W	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	438					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	GGGACTGACCGAAACATAGCC	0.542													62	150					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53694250	53694250	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53694250C>T	uc003dgv.3	+	5	877	c.714C>T	c.(712-714)GCC>GCT	p.A238A	CACNA1D_uc003dgu.3_Silent_p.A238A|CACNA1D_uc003dgy.3_Silent_p.A238A	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	238	Helical; Name=S4 of repeat I; (Potential).|I.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	ATGTCAAAGCCCTCCGTGCCT	0.453													25	75					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53694273	53694273	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53694273G>A	uc003dgv.3	+	5	900	c.737G>A	c.(736-738)CGA>CAA	p.R246Q	CACNA1D_uc003dgu.3_Missense_Mutation_p.R246Q|CACNA1D_uc003dgy.3_Missense_Mutation_p.R246Q	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	246	Helical; Name=S4 of repeat I; (Potential).|I.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CGAGTGTTGCGACCACTTCGA	0.478													15	76					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53766094	53766094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53766094C>T	uc003dgv.3	+	18	2621	c.2458C>T	c.(2458-2460)CCT>TCT	p.P820S	CACNA1D_uc003dgu.3_Missense_Mutation_p.P840S|CACNA1D_uc003dgy.3_Missense_Mutation_p.P820S|CACNA1D_uc003dgw.3_Missense_Mutation_p.P487S|CACNA1D_uc003dgx.1_5'UTR	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	820	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CCCCTATCCGCCTTGCGATGT	0.537													7	68					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53814059	53814059	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53814059G>A	uc003dgv.3	+	38	4757	c.4594G>A	c.(4594-4596)GTT>ATT	p.V1532I	CACNA1D_uc003dgu.3_Missense_Mutation_p.V1552I|CACNA1D_uc003dgy.3_Missense_Mutation_p.V1517I|CACNA1D_uc003dgw.3_Missense_Mutation_p.V1199I|CACNA1D_uc003dgx.1_Missense_Mutation_p.V708I	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1532	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	ACAGAGATTAGTTGCCATGAA	0.418													20	93					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53839063	53839063	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53839063G>A	uc003dgv.3	+	45	5802	c.5639G>A	c.(5638-5640)AGG>AAG	p.R1880K	CACNA1D_uc003dgu.3_Missense_Mutation_p.R1900K|CACNA1D_uc003dgy.3_Missense_Mutation_p.R1856K|CACNA1D_uc003dgw.3_Missense_Mutation_p.R1547K|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1880	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GACTCTGAGAGGCCCCGAGGC	0.537													23	113					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53839141	53839141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53839141C>T	uc003dgv.3	+	45	5880	c.5717C>T	c.(5716-5718)CCA>CTA	p.P1906L	CACNA1D_uc003dgu.3_Missense_Mutation_p.P1926L|CACNA1D_uc003dgy.3_Missense_Mutation_p.P1882L|CACNA1D_uc003dgw.3_Missense_Mutation_p.P1573L|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1906	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CGGAGATCTCCAAGGAGACGC	0.572													46	84					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53844098	53844098	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53844098C>T	uc003dgv.3	+	47	6128	c.5965C>T	c.(5965-5967)CCC>TCC	p.P1989S	CACNA1D_uc003dgu.3_Missense_Mutation_p.P2009S|CACNA1D_uc003dgy.3_Missense_Mutation_p.P1965S|CACNA1D_uc003dgw.3_Missense_Mutation_p.P1656S|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1989	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	AGCAACCCCTCCCTACCGGGA	0.632													15	85					0	0	1	0	0
CHDH	55349	broad.mit.edu	37	3	53854576	53854576	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53854576G>A	uc003dgz.2	-	6	1485	c.1045C>T	c.(1045-1047)CCT>TCT	p.P349S		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	349					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	AGGGTGATAGGGCGGGTGCAT	0.552													41	90					0	0	1	0	0
CHDH	55349	broad.mit.edu	37	3	53857356	53857356	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53857356C>T	uc003dgz.2	-	3	1120	c.680G>A	c.(679-681)TGG>TAG	p.W227*		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	227					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	CATGTCCATCCAGCCGAAGCC	0.607													7	6					0	0	1	0	0
ACTR8	93973	broad.mit.edu	37	3	53911378	53911378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53911378G>A	uc003dhd.2	-	5	606	c.547C>T	c.(547-549)CAC>TAC	p.H183Y	ACTR8_uc003dhb.2_5'UTR|ACTR8_uc003dhc.2_Missense_Mutation_p.H72Y	NM_022899	NP_075050	Q9H981	ARP8_HUMAN	actin-related protein 8	183					cell division|DNA recombination|DNA repair|mitosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex	protein binding			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000143)|KIRC - Kidney renal clear cell carcinoma(284;0.00544)|Kidney(284;0.00607)|OV - Ovarian serous cystadenocarcinoma(275;0.111)		ATAGGCCAGTGAATATTGTAA	0.423													24	61					0	0	1	0	0
ACTR8	93973	broad.mit.edu	37	3	53912393	53912393	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:53912393G>A	uc003dhd.2	-	3	455	c.396C>T	c.(394-396)TCC>TCT	p.S132S	ACTR8_uc003dhb.2_5'Flank|ACTR8_uc003dhc.2_Silent_p.S21S	NM_022899	NP_075050	Q9H981	ARP8_HUMAN	actin-related protein 8	132					cell division|DNA recombination|DNA repair|mitosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex	protein binding			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000143)|KIRC - Kidney renal clear cell carcinoma(284;0.00544)|Kidney(284;0.00607)|OV - Ovarian serous cystadenocarcinoma(275;0.111)		CCTGTTCAGGGGACACAGGAA	0.363													42	193					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604068	54604068	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54604068G>A	uc003dhf.2	+	8	873	c.825G>A	c.(823-825)GCG>GCA	p.A275A	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.A181A|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.A9A	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	275	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TGACTATCGCGAAGCAAACAG	0.473													51	108					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604082	54604082	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54604082C>T	uc003dhf.2	+	8	887	c.839C>T	c.(838-840)TCA>TTA	p.S280L	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.S186L|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.S14L	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	280	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CAAACAGTCTCATCCATTTTG	0.448													54	117					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54661819	54661819	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54661819C>T	uc003dhf.2	+	10	1017	c.969C>T	c.(967-969)TTC>TTT	p.F323F	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.F229F|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.F57F	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	323	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TTCAGCACTTCAGGGAGCATC	0.418													8	14					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54798330	54798330	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54798330C>T	uc003dhf.2	+	13	1380	c.1332C>T	c.(1330-1332)ATC>ATT	p.I444I	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.I350I|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.I178I	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	444	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CCAAAGTCATCGACCAGGAGC	0.522													40	86					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54798336	54798336	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54798336G>A	uc003dhf.2	+	13	1386	c.1338G>A	c.(1336-1338)CAG>CAA	p.Q446Q	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.Q352Q|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.Q180Q	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	446	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TCATCGACCAGGAGCATGATG	0.512													39	74					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54914862	54914862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54914862C>T	uc003dhf.2	+	21	1932	c.1884C>T	c.(1882-1884)TTC>TTT	p.F628F	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.F534F|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.F362F|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	628	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GGAAATATTTCTTCCGAGGGA	0.483													94	239					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54919601	54919601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54919601C>T	uc003dhf.2	+	23	2092	c.2044C>T	c.(2044-2046)CCT>TCT	p.P682S	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.P588S|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.P416S|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	682	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGGCAAAGAACCTCTGCTCCA	0.468													6	9					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54922002	54922002	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54922002C>T	uc003dhf.2	+	24	2121	c.2073C>T	c.(2071-2073)ATC>ATT	p.I691I	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.I597I|CACNA2D3_uc003dhh.1_RNA|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	691	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AAGAATTGATCCAAGAAGTCC	0.532													40	62					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54952570	54952570	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54952570G>A	uc003dhl.2	-	3	1088	c.954C>T	c.(952-954)GCC>GCT	p.A318A	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	318	Cytoplasmic (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		CATGGTACTGGGCTGTGATTG	0.517													80	147					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54952815	54952815	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54952815G>A	uc003dhl.2	-	3	843	c.709C>T	c.(709-711)CCT>TCT	p.P237S	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	237	Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		ACTGGATCAGGAGCAGGAAGA	0.597													11	21					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54952916	54952916	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54952916C>T	uc003dhl.2	-	3	742	c.608G>A	c.(607-609)GGA>GAA	p.G203E	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	203	Extracellular (Potential).|LRRCT.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		GTCTGTTAGTCCCCCTTTAAA	0.453													5	38					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54958874	54958874	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54958874C>T	uc003dhl.2	-	2	510	c.376G>A	c.(376-378)GAG>AAG	p.E126K	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	126	LRR 4.|Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		AAATCAAGCTCCCTCAGCTGA	0.463													20	57					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54958995	54958995	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54958995G>A	uc003dhl.2	-	2	389	c.255C>T	c.(253-255)TCC>TCT	p.S85S	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	85	Extracellular (Potential).|LRR 2.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		GATTTGAAAGGGAATTGTTGG	0.448													14	32					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54959101	54959101	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54959101G>A	uc003dhl.2	-	2	283	c.149C>T	c.(148-150)CCT>CTT	p.P50L	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	50	Extracellular (Potential).|LRRNT.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		TCGAGTCTGAGGAGGTAAATG	0.473													6	37					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54959231	54959231	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54959231G>A	uc003dhl.2	-	2	153	c.19C>T	c.(19-21)CTG>TTG	p.L7L	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	7						integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		CTGGAAAACAGGAGCAGTTCA	0.463													10	37					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54962074	54962074	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:54962074C>T	uc003dhl.2	-	1	1	c.-133_splice	c.e1-1		CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1							integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		TGCTTTTCTTCAATGCAGAAA	0.453													15	17					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55002508	55002508	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:55002508C>T	uc003dhf.2	+	28	2529	c.2481C>T	c.(2479-2481)TTC>TTT	p.F827F	CACNA2D3_uc003dhg.1_Silent_p.F733F|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	827	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TTGAATTTTTCCAAAGGAAGT	0.368													4	14					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55003839	55003839	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:55003839G>A	uc003dhf.2	+	29	2572	c.2524G>A	c.(2524-2526)GAT>AAT	p.D842N	CACNA2D3_uc003dhg.1_Missense_Mutation_p.D748N|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	842	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TGCTTCCCTGGATGGCAAATG	0.512													24	29					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55107474	55107474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:55107474C>T	uc003dhf.2	+	36	3038	c.2990C>T	c.(2989-2991)TCC>TTC	p.S997F	CACNA2D3_uc003dhg.1_Missense_Mutation_p.S903F|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	997	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TCCAACAGGTCCTTTGTCATC	0.507													18	47					0	0	1	0	0
WNT5A	7474	broad.mit.edu	37	3	55504230	55504230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:55504230C>T	uc003dhn.2	-	5	1351	c.1033G>A	c.(1033-1035)GAC>AAC	p.D345N	WNT5A_uc003dhm.2_Missense_Mutation_p.D330N|WNT5A_uc010hmw.2_Missense_Mutation_p.D330N|WNT5A_uc010hmx.2_Missense_Mutation_p.D256N	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	345					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		TTGAACTGGTCGTAGCCACGG	0.617													25	81					0	0	1	0	0
WNT5A	7474	broad.mit.edu	37	3	55504313	55504313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:55504313G>A	uc003dhn.2	-	5	1268	c.950C>T	c.(949-951)TCG>TTG	p.S317L	WNT5A_uc003dhm.2_Missense_Mutation_p.S302L|WNT5A_uc010hmw.2_Missense_Mutation_p.S302L|WNT5A_uc010hmx.2_Missense_Mutation_p.S228L	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	317					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		CGTGCCCAGCGAGCCGGTGCT	0.627													18	44					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56026089	56026089	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:56026089C>T	uc003dhr.1	-	11	2507	c.2251G>A	c.(2251-2253)GAG>AAG	p.E751K	ERC2_uc003dht.1_Missense_Mutation_p.E234K	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	751	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		ATTTACCTCTCCAGTTCTGCG	0.483													9	152					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56183149	56183149	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:56183149G>A	uc003dhr.1	-	5	1417	c.1161C>T	c.(1159-1161)ATC>ATT	p.I387I		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	387	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CCAATGAAGCGATTTTTGTGT	0.328													5	28					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468411	56468411	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:56468411C>T	uc003dhr.1	-	2	881	c.625G>A	c.(625-627)GAG>AAG	p.E209K		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	209	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CTCATCTGCTCCTTGAGGACA	0.458													28	58					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468689	56468689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:56468689G>A	uc003dhr.1	-	2	603	c.347C>T	c.(346-348)TCA>TTA	p.S116L		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	116						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		ATCTGTGTATGAAAGGACATC	0.512													53	136					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468954	56468954	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:56468954C>T	uc003dhr.1	-	2	338	c.82G>A	c.(82-84)GGC>AGC	p.G28S		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	28						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CTTCGGTGGCCCAAACGAGGA	0.498													20	57					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468962	56468962	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:56468962G>A	uc003dhr.1	-	2	330	c.74C>T	c.(73-75)CCT>CTT	p.P25L		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	25						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GCCCAAACGAGGAGACCTTGG	0.488													19	52					0	0	1	0	0
C3orf63	23272	broad.mit.edu	37	3	56681165	56681165	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:56681165A>G	uc003did.3	-	14	1701	c.1600T>C	c.(1600-1602)TCT>CCT	p.S534P	C3orf63_uc003dic.3_Missense_Mutation_p.S138P|C3orf63_uc003die.3_Missense_Mutation_p.S534P	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b	534										ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		TGAATCAAAGAAAATTGTAAA	0.338													25	88					0	0	1	0	0
IL17RD	54756	broad.mit.edu	37	3	57132039	57132039	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:57132039G>A	uc003dil.2	-	12	1781	c.1692C>T	c.(1690-1692)TTC>TTT	p.F564F	IL17RD_uc003dik.2_Silent_p.F540F|IL17RD_uc010hna.2_Silent_p.F420F|IL17RD_uc011bex.1_Silent_p.F420F	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	564	Cytoplasmic (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		GGAAGGGAACGAACTGCTTTT	0.527													10	42					0	0	1	0	0
APPL1	26060	broad.mit.edu	37	3	57272128	57272128	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:57272128C>T	uc003dio.2	+	4	416	c.269C>T	c.(268-270)TCA>TTA	p.S90L	APPL1_uc010hnb.2_Missense_Mutation_p.S90L|APPL1_uc011bey.1_Missense_Mutation_p.S73L	NM_012096	NP_036228	Q9UKG1	DP13A_HUMAN	adaptor protein, phosphotyrosine interaction, PH	90	Required for RAB5A binding.				apoptosis|cell cycle|cell proliferation|insulin receptor signaling pathway|regulation of apoptosis|regulation of establishment of protein localization in plasma membrane|regulation of glucose import	cytosol|early endosome membrane|microsome|nucleus|vesicle membrane	protein kinase B binding			breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0124)|Kidney(284;0.0144)		CAACAGTTTTCAAAAGTTATA	0.328													19	45					0	0	1	0	0
ASB14	142686	broad.mit.edu	37	3	57312513	57312513	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:57312513C>T	uc003diq.2	-	8	1419	c.831G>A	c.(829-831)CTG>CTA	p.L277L	ASB14_uc003dip.1_Silent_p.L156L	NM_001142733	NP_001136205	A6NK59	ASB14_HUMAN	ankyrin repeat and SOCS box-containing 14	441	ANK 11.				intracellular signal transduction						0				KIRC - Kidney renal clear cell carcinoma(284;0.011)|Kidney(284;0.0127)		ACCCATAGTTCAGCAGCATCC	0.438													38	118					0	0	1	0	0
DNAH12	201625	broad.mit.edu	37	3	57494895	57494895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:57494895C>T	uc003dit.2	-	6	695	c.514G>A	c.(514-516)GAA>AAA	p.E172K	DNAH12_uc003diu.2_Missense_Mutation_p.E172K	NM_178504	NP_848599	Q6ZR08	DYH12_HUMAN	dynein heavy chain domain 2 isoform 1	172	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			pancreas(1)|skin(1)	2						GGACCTCCTTCATCTTCAAGC	0.313													23	75					0	0	1	0	0
FAM116A	201627	broad.mit.edu	37	3	57631445	57631445	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:57631445G>A	uc003dja.2	-	11	1051	c.980C>T	c.(979-981)CCT>CTT	p.P327L		NM_152678	NP_689891	Q8IWF6	F116A_HUMAN	hypothetical protein LOC201627	327										pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000621)|KIRC - Kidney renal clear cell carcinoma(284;0.0485)|Kidney(284;0.0607)		AGTGAAATAAGGTCGGAAATC	0.338													8	96					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58067416	58067416	+	Silent	SNP	C	T	T	rs80356507		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58067416C>T	uc003djj.2	+	4	865	c.700C>T	c.(700-702)CTG>TTG	p.L234L	FLNB_uc010hne.2_Silent_p.L234L|FLNB_uc003djk.2_Silent_p.L234L|FLNB_uc010hnf.2_Silent_p.L234L|FLNB_uc003djl.2_Silent_p.L65L|FLNB_uc003djm.2_Silent_p.L65L	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	234	CH 2.|Actin-binding.		L -> V (in LRS1).		actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TATGACTTACCTGTCCCAGTT	0.527													12	136					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58084602	58084602	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58084602C>T	uc003djj.2	+	8	1477	c.1312C>T	c.(1312-1314)CCT>TCT	p.P438S	FLNB_uc010hne.2_Missense_Mutation_p.P438S|FLNB_uc003djk.2_Missense_Mutation_p.P438S|FLNB_uc010hnf.2_Missense_Mutation_p.P438S|FLNB_uc003djl.2_Missense_Mutation_p.P269S|FLNB_uc003djm.2_Missense_Mutation_p.P269S	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	438	Filamin 2.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGACACTATTCCTAAGAGTCC	0.552													25	94					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58107029	58107029	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58107029G>A	uc003djj.2	+	20	3090	c.2925G>A	c.(2923-2925)GGG>GGA	p.G975G	FLNB_uc010hne.2_Silent_p.G975G|FLNB_uc003djk.2_Silent_p.G975G|FLNB_uc010hnf.2_Silent_p.G975G|FLNB_uc003djl.2_Silent_p.G806G|FLNB_uc003djm.2_Silent_p.G806G	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	975	Filamin 8.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GAGGCCAGGGGAAGCTGGACG	0.587													46	110					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58111348	58111348	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58111348C>T	uc003djj.2	+	23	4104	c.3939C>T	c.(3937-3939)ATC>ATT	p.I1313I	FLNB_uc010hne.2_Silent_p.I1313I|FLNB_uc003djk.2_Silent_p.I1313I|FLNB_uc010hnf.2_Silent_p.I1313I|FLNB_uc003djl.2_Silent_p.I1144I|FLNB_uc003djm.2_Silent_p.I1144I	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1313	Filamin 11.|Interaction with FBLP1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		ACGTGCCTATCCCAAACAGTC	0.473													38	85					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58111395	58111395	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58111395C>T	uc003djj.2	+	23	4151	c.3986C>T	c.(3985-3987)TCT>TTT	p.S1329F	FLNB_uc010hne.2_Missense_Mutation_p.S1329F|FLNB_uc003djk.2_Missense_Mutation_p.S1329F|FLNB_uc010hnf.2_Missense_Mutation_p.S1329F|FLNB_uc003djl.2_Missense_Mutation_p.S1160F|FLNB_uc003djm.2_Missense_Mutation_p.S1160F	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1329	Filamin 12.|Interaction with FBLP1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TGCCAGCCATCTAGGGTGCAA	0.517													29	90					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58118620	58118620	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58118620G>A	uc003djj.2	+	26	4641	c.4476G>A	c.(4474-4476)ATG>ATA	p.M1492I	FLNB_uc010hne.2_Missense_Mutation_p.M1523I|FLNB_uc003djk.2_Missense_Mutation_p.M1492I|FLNB_uc010hnf.2_Missense_Mutation_p.M1492I|FLNB_uc003djl.2_Missense_Mutation_p.M1323I|FLNB_uc003djm.2_Missense_Mutation_p.M1323I	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1492	Filamin 13.|Interaction with FBLP1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GACCTTACATGGTCTCAGTTA	0.368													13	27					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58118625	58118625	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58118625C>T	uc003djj.2	+	26	4646	c.4481C>T	c.(4480-4482)TCA>TTA	p.S1494L	FLNB_uc010hne.2_Missense_Mutation_p.S1525L|FLNB_uc003djk.2_Missense_Mutation_p.S1494L|FLNB_uc010hnf.2_Missense_Mutation_p.S1494L|FLNB_uc003djl.2_Missense_Mutation_p.S1325L|FLNB_uc003djm.2_Missense_Mutation_p.S1325L	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1494	Filamin 13.|Interaction with FBLP1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TACATGGTCTCAGTTAAATAT	0.358													12	22					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58134543	58134543	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58134543G>A	uc003djj.2	+	36	6220	c.6055G>A	c.(6055-6057)GAG>AAG	p.E2019K	FLNB_uc010hne.2_Missense_Mutation_p.E2050K|FLNB_uc003djk.2_Missense_Mutation_p.E2008K|FLNB_uc010hnf.2_Missense_Mutation_p.E1995K|FLNB_uc003djl.2_Missense_Mutation_p.E1839K|FLNB_uc003djm.2_Missense_Mutation_p.E1826K|FLNB_uc010hng.1_5'Flank	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2019	Filamin 19.|Interaction with the cytoplasmic tail of GP1BA.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCGGACTTTCGAGATGTCTGA	0.597													23	59					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58149057	58149057	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58149057G>A	uc003djj.2	+	43	7363	c.7198G>A	c.(7198-7200)GGT>AGT	p.G2400S	FLNB_uc010hne.2_Missense_Mutation_p.G2431S|FLNB_uc003djk.2_Missense_Mutation_p.G2389S|FLNB_uc010hnf.2_Missense_Mutation_p.G2376S|FLNB_uc003djl.2_Missense_Mutation_p.G2220S|FLNB_uc003djm.2_Missense_Mutation_p.G2207S|uc003djn.2_RNA	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2400	Filamin 23.|Interaction with INPPL1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGGCACCACAGGTAACCCACT	0.572													21	37					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58155415	58155415	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58155415C>T	uc003djj.2	+	45	7681	c.7516C>T	c.(7516-7518)CCC>TCC	p.P2506S	FLNB_uc010hne.2_Missense_Mutation_p.P2537S|FLNB_uc003djk.2_Missense_Mutation_p.P2495S|FLNB_uc010hnf.2_Missense_Mutation_p.P2482S|FLNB_uc003djl.2_Missense_Mutation_p.P2326S|FLNB_uc003djm.2_Missense_Mutation_p.P2313S|uc003djn.2_Intron	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2506	Hinge 2 (By similarity).|Interaction with INPPL1.|Self-association site, tail (By similarity).				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TAGCGCCATTCCCAAGGCATC	0.587													49	101					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58155425	58155425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58155425C>T	uc003djj.2	+	45	7691	c.7526C>T	c.(7525-7527)TCC>TTC	p.S2509F	FLNB_uc010hne.2_Missense_Mutation_p.S2540F|FLNB_uc003djk.2_Missense_Mutation_p.S2498F|FLNB_uc010hnf.2_Missense_Mutation_p.S2485F|FLNB_uc003djl.2_Missense_Mutation_p.S2329F|FLNB_uc003djm.2_Missense_Mutation_p.S2316F|uc003djn.2_Intron	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2509	Interaction with INPPL1.|Filamin 24.|Self-association site, tail (By similarity).|Interaction with FLNA 2.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCCAAGGCATCCTCGGACGCC	0.582													40	89					0	0	1	0	0
ABHD6	57406	broad.mit.edu	37	3	58271159	58271159	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58271159C>T	uc003djs.3	+	8	1226	c.816C>T	c.(814-816)ATC>ATT	p.I272I	ABHD6_uc003djr.2_Silent_p.I272I|ABHD6_uc003djt.3_Silent_p.I272I	NM_020676	NP_065727	Q9BV23	ABHD6_HUMAN	abhydrolase domain containing 6	272	Cytoplasmic (Potential).					integral to membrane	acylglycerol lipase activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(55;0.000225)|KIRC - Kidney renal clear cell carcinoma(284;0.0471)|Kidney(284;0.0589)|OV - Ovarian serous cystadenocarcinoma(275;0.209)		CGACGCAGATCATCTGGGGGA	0.483													21	64					0	0	1	0	0
RPP14	11102	broad.mit.edu	37	3	58296101	58296101	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58296101C>T	uc010hnh.2	+	2	473	c.45C>T	c.(43-45)AAC>AAT	p.N15N	RPP14_uc010hni.2_Intron|RPP14_uc003dju.3_Silent_p.N15N|RPP14_uc003djv.3_Intron|RPP14_uc003djw.3_Intron	NM_001098783	NP_001092253	O95059	RPP14_HUMAN	ribonuclease P 14kDa subunit	15					tRNA processing	nucleus	identical protein binding|ribonuclease P activity|RNA binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000187)|KIRC - Kidney renal clear cell carcinoma(10;0.0102)|Kidney(10;0.0118)|OV - Ovarian serous cystadenocarcinoma(275;0.191)		TTTACAAAAACCCTTCCGAGT	0.383													27	76					0	0	1	0	0
PXK	54899	broad.mit.edu	37	3	58368345	58368345	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58368345G>A	uc003djz.1	+	4	405	c.306G>A	c.(304-306)GTG>GTA	p.V102V	PXK_uc003djx.1_Silent_p.V102V|PXK_uc003djy.1_Silent_p.V85V|PXK_uc003dka.1_Silent_p.V102V|PXK_uc003dkb.1_Silent_p.V19V|PXK_uc003dkc.1_Silent_p.V85V|PXK_uc011bfe.1_Silent_p.V69V|PXK_uc010hnj.1_Silent_p.V69V|PXK_uc003dkd.1_Intron|PXK_uc010hnk.1_5'UTR	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	102	Protein kinase.|PX.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		ATCTCAACGTGATCACAACAA	0.388													25	56					0	0	1	0	0
PXK	54899	broad.mit.edu	37	3	58382778	58382778	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58382778C>T	uc003djz.1	+	10	934	c.835C>T	c.(835-837)CTT>TTT	p.L279F	PXK_uc003djx.1_Missense_Mutation_p.L279F|PXK_uc003djy.1_Missense_Mutation_p.L262F|PXK_uc003dka.1_Missense_Mutation_p.L279F|PXK_uc003dkb.1_Missense_Mutation_p.L196F|PXK_uc003dkc.1_Missense_Mutation_p.L262F|PXK_uc011bfe.1_Missense_Mutation_p.L246F|PXK_uc010hnj.1_Missense_Mutation_p.L246F|PXK_uc003dkd.1_Missense_Mutation_p.L142F|PXK_uc010hnk.1_Missense_Mutation_p.L53F	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	279	Protein kinase.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		ACTGAAGTTTCTTCATGACAA	0.398													52	119					0	0	1	0	0
ACOX2	8309	broad.mit.edu	37	3	58512243	58512243	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58512243G>A	uc003dkl.2	-	10	1471	c.1296C>T	c.(1294-1296)GCC>GCT	p.A432A		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	432					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		AGGTACAGGAGGCCGACAATT	0.607													22	29					0	0	1	0	0
ACOX2	8309	broad.mit.edu	37	3	58512360	58512360	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58512360C>T	uc003dkl.2	-	10	1354	c.1179G>A	c.(1177-1179)ATG>ATA	p.M393I		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	393					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		TCATGGCCTTCATGCCCGTGC	0.607													8	57					0	0	1	0	0
ACOX2	8309	broad.mit.edu	37	3	58520251	58520251	+	Splice_Site	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58520251T>A	uc003dkl.2	-	3	336	c.161_splice	c.e3-1	p.E54_splice		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2						bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		TGATGCTCTCTGCAGAGGACA	0.453													24	51					0	0	1	0	0
FAM107A	11170	broad.mit.edu	37	3	58552332	58552332	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58552332C>T	uc003dkm.2	-	5	977	c.418G>A	c.(418-420)GAA>AAA	p.E140K	FAM107A_uc003dko.2_Missense_Mutation_p.E171K|FAM107A_uc003dkn.2_Missense_Mutation_p.E140K|FAM107A_uc010hnm.2_Missense_Mutation_p.E168K|FAM107A_uc003dkp.1_3'UTR	NM_007177	NP_009108	O95990	F107A_HUMAN	downregulated in renal cell carcinoma	140					regulation of cell growth	nucleus	protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000189)|Kidney(10;0.000536)|KIRC - Kidney renal clear cell carcinoma(10;0.000716)|OV - Ovarian serous cystadenocarcinoma(275;0.154)		TCTCTCTCTTCGCTGGTCAGT	0.602													10	103					0	0	1	0	0
FAM3D	131177	broad.mit.edu	37	3	58620087	58620087	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58620087C>T	uc003dkq.2	-	10	891	c.594G>A	c.(592-594)AAG>AAA	p.K198K		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D	198					negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		CTGGGCTGTTCTTTAAGAACT	0.507													34	79					0	0	1	0	0
FAM3D	131177	broad.mit.edu	37	3	58639429	58639429	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58639429C>T	uc003dkq.2	-	3	390	c.93G>A	c.(91-93)ATG>ATA	p.M31I		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D	31					negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		GGATGGTTTTCATGCTGAAGC	0.577													59	146					0	0	1	0	0
FAM3D	131177	broad.mit.edu	37	3	58639509	58639509	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58639509C>T	uc003dkq.2	-	3	311	c.14_splice	c.e3-1	p.G5_splice		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D						negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		CGAAGCACACCTGCTGAGCAA	0.532													8	71					0	0	1	0	0
C3orf67	200844	broad.mit.edu	37	3	58849567	58849567	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58849567C>T	uc003dkt.1	-	12	1344	c.935G>A	c.(934-936)AGC>AAC	p.S312N	C3orf67_uc003dks.1_Missense_Mutation_p.S127N|uc003dku.1_Intron|C3orf67_uc003dkv.1_Missense_Mutation_p.S127N|C3orf67_uc003dkw.2_Missense_Mutation_p.S207N	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	312											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		AGACTGTCTGCTGGATGCCAG	0.453													16	58					0	0	1	0	0
C3orf67	200844	broad.mit.edu	37	3	58855057	58855057	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:58855057G>A	uc003dkt.1	-	9	1046	c.637C>T	c.(637-639)CAT>TAT	p.H213Y	C3orf67_uc003dks.1_Missense_Mutation_p.H28Y|uc003dku.1_Intron|C3orf67_uc003dkv.1_Missense_Mutation_p.H28Y|C3orf67_uc003dkw.2_Missense_Mutation_p.H121Y	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	213											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		TTCTTACCATGAATAGGTACA	0.328													17	70					0	0	1	0	0
PTPRG	5793	broad.mit.edu	37	3	62189529	62189529	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:62189529G>A	uc003dlb.2	+	12	2779	c.2060G>A	c.(2059-2061)GGG>GAG	p.G687E	PTPRG_uc003dlc.2_Missense_Mutation_p.G687E	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	687	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		CAGTATGCAGGGAGTGATCCC	0.587													22	58					0	0	1	0	0
PTPRG	5793	broad.mit.edu	37	3	62253103	62253103	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:62253103A>G	uc003dlb.2	+	18	3394	c.2675A>G	c.(2674-2676)AAG>AGG	p.K892R	PTPRG_uc003dlc.2_Missense_Mutation_p.K863R|PTPRG_uc011bfi.1_Missense_Mutation_p.K138R|uc010hno.2_Intron|uc003dld.3_Intron|uc010hnp.2_Intron|uc003dle.3_Intron	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	892	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		AGTAGGGTGAAGTTAAGACCT	0.333													42	111					0	0	1	0	0
FEZF2	55079	broad.mit.edu	37	3	62358297	62358297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:62358297C>T	uc003dlh.2	-	1	454	c.247G>A	c.(247-249)GTG>ATG	p.V83M	FEZF2_uc003dli.2_Missense_Mutation_p.V83M	NM_018008	NP_060478	Q8TBJ5	FEZF2_HUMAN	FEZ family zinc finger 2	83					transcription, DNA-dependent	nucleus	zinc ion binding			lung(1)	1		Lung SC(41;0.0262)		BRCA - Breast invasive adenocarcinoma(55;0.000221)|KIRC - Kidney renal clear cell carcinoma(15;0.00834)|Kidney(15;0.00957)		TTTGACGGCACCTCGTAGCCT	0.498													18	46					0	0	1	0	0
CADPS	8618	broad.mit.edu	37	3	62423883	62423883	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:62423883G>A	uc003dll.2	-	28	4033	c.3673C>T	c.(3673-3675)CCC>TCC	p.P1225S	CADPS_uc003dlj.1_Missense_Mutation_p.P180S|CADPS_uc003dlk.1_Missense_Mutation_p.P673S|CADPS_uc003dlm.2_Missense_Mutation_p.P1186S|CADPS_uc003dln.2_Missense_Mutation_p.P1146S	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1225	Mediates targeting and association with DCVs (By similarity).				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TCCATCCCGGGTTTCTGTAAA	0.468													18	45					0	0	1	0	0
CADPS	8618	broad.mit.edu	37	3	62543093	62543093	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:62543093G>A	uc003dll.2	-	10	2100	c.1740C>T	c.(1738-1740)ACC>ACT	p.T580T	CADPS_uc003dlk.1_Silent_p.T84T|CADPS_uc003dlm.2_Silent_p.T580T|CADPS_uc003dln.2_Silent_p.T580T	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	580	PH.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		GCTGGGGGTCGGTGTAATCCA	0.463													29	133					0	0	1	0	0
ATXN7	6314	broad.mit.edu	37	3	63967960	63967960	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:63967960C>T	uc003dlw.3	+	7	1404	c.851C>T	c.(850-852)TCC>TTC	p.S284F	ATXN7_uc003dlv.2_Missense_Mutation_p.S284F|ATXN7_uc010hnv.2_Missense_Mutation_p.S284F|ATXN7_uc011bfn.1_Missense_Mutation_p.S139F	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	284					cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		ACTGTGAGTTCCTTAGTCAAG	0.517													9	66					0	0	1	0	0
ATXN7	6314	broad.mit.edu	37	3	63981490	63981490	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:63981490C>T	uc003dlw.3	+	12	2545	c.1992C>T	c.(1990-1992)TCC>TCT	p.S664S	ATXN7_uc003dlv.2_Silent_p.S664S|ATXN7_uc010hnv.2_Silent_p.S664S|ATXN7_uc011bfn.1_Silent_p.S519S	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	664	Ser-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		CGGTTCCTTCCTCCCCCATGT	0.512													44	91					0	0	1	0	0
PRICKLE2	166336	broad.mit.edu	37	3	64084892	64084892	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:64084892G>A	uc003dmf.2	-	8	2956	c.2370C>T	c.(2368-2370)TTC>TTT	p.F790F		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	790						cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		GTTCTCCTAGGAAATAGCCCT	0.567													22	64					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64526872	64526872	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:64526872C>T	uc003dmg.2	-	36	5452	c.5420G>A	c.(5419-5421)GGG>GAG	p.G1807E	ADAMTS9_uc011bfo.1_Missense_Mutation_p.G1779E|ADAMTS9_uc011bfp.1_Missense_Mutation_p.G718E	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1807	GON.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GCGCCGGCTCCCGTTATAGGG	0.478													46	103					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64527202	64527202	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:64527202C>T	uc003dmg.2	-	34	5324	c.5292G>A	c.(5290-5292)AAG>AAA	p.K1764K	ADAMTS9_uc011bfo.1_Silent_p.K1736K|ADAMTS9_uc011bfp.1_Silent_p.K675K	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1764	GON.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TGACATTCACCTTCAGAAGCT	0.398													36	112					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64527218	64527218	+	Missense_Mutation	SNP	C	T	T	rs141560382	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:64527218C>T	uc003dmg.2	-	34	5308	c.5276G>A	c.(5275-5277)AGA>AAA	p.R1759K	ADAMTS9_uc011bfo.1_Missense_Mutation_p.R1731K|ADAMTS9_uc011bfp.1_Missense_Mutation_p.R670K	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1759	GON.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		AAGCTTTCCTCTAATCATCAG	0.398													54	105					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64589690	64589690	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:64589690C>T	uc003dmg.2	-	25	3687	c.3655G>A	c.(3655-3657)GAG>AAG	p.E1219K	ADAMTS9_uc011bfo.1_Missense_Mutation_p.E1191K|ADAMTS9_uc003dmh.1_Missense_Mutation_p.E1048K|ADAMTS9_uc011bfp.1_Missense_Mutation_p.E130K	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1219	TSP type-1 7.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CAGGCACTCTCGTCAGCCACA	0.542													6	70					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64589979	64589979	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:64589979G>A	uc003dmg.2	-	24	3535	c.3503C>T	c.(3502-3504)CCC>CTC	p.P1168L	ADAMTS9_uc011bfo.1_Missense_Mutation_p.P1140L|ADAMTS9_uc003dmh.1_Missense_Mutation_p.P997L|ADAMTS9_uc011bfp.1_Missense_Mutation_p.P79L	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1168					glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GGCAGCTGGGGGAGGATGACA	0.478													33	68					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64606904	64606904	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:64606904C>T	uc003dmg.2	-	19	2731	c.2699G>A	c.(2698-2700)CGA>CAA	p.R900Q	ADAMTS9_uc011bfo.1_Missense_Mutation_p.R872Q|ADAMTS9_uc003dmh.1_Missense_Mutation_p.R729Q|ADAMTS9_uc003dmk.1_Missense_Mutation_p.R900Q	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	900	TSP type-1 2.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		AACAAGTTTTCGTTTCCGTTC	0.378													12	26					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64633642	64633642	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:64633642C>T	uc003dmg.2	-	11	1716	c.1684G>A	c.(1684-1686)GAT>AAT	p.D562N	ADAMTS9_uc011bfo.1_Missense_Mutation_p.D534N|ADAMTS9_uc003dmh.1_Missense_Mutation_p.D391N|ADAMTS9_uc003dmk.1_Missense_Mutation_p.D562N	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	562	Disintegrin.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TCCGTCCCATCGGCCCAGGGT	0.522													30	117					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64640081	64640081	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:64640081C>T	uc003dmg.2	-	8	1296	c.1264G>A	c.(1264-1266)GAA>AAA	p.E422K	ADAMTS9_uc011bfo.1_Missense_Mutation_p.E394K|ADAMTS9_uc003dmh.1_Missense_Mutation_p.E251K|ADAMTS9_uc003dmk.1_Missense_Mutation_p.E422K	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	422	Peptidase M12B.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CCACTATCTTCACTAATAGAA	0.398													26	178					0	0	1	0	0
MAGI1	9223	broad.mit.edu	37	3	65425637	65425637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:65425637C>T	uc003dmn.2	-	9	1713	c.1187G>A	c.(1186-1188)CGG>CAG	p.R396Q	MAGI1_uc003dmm.2_Missense_Mutation_p.R396Q|MAGI1_uc003dmo.2_Missense_Mutation_p.R396Q|MAGI1_uc003dmp.2_Missense_Mutation_p.R396Q|MAGI1_uc010hny.2_Missense_Mutation_p.R281Q	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	396					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CTGCTTCTTCCGTTTGGCTTC	0.323											OREG0015658	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	82					0	0	1	0	0
MAGI1	9223	broad.mit.edu	37	3	65456139	65456139	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:65456139C>T	uc003dmn.2	-	5	1304	c.778G>A	c.(778-780)GAG>AAG	p.E260K	MAGI1_uc003dmm.2_Missense_Mutation_p.E260K|MAGI1_uc003dmo.2_Missense_Mutation_p.E260K|MAGI1_uc003dmp.2_Missense_Mutation_p.E260K|MAGI1_uc010hny.2_Missense_Mutation_p.E145K|MAGI1_uc003dmr.2_Missense_Mutation_p.E261K	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	260	Guanylate kinase-like.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		AGAGTGTGCTCCTCTTGTTCA	0.458													14	81					0	0	1	0	0
MAGI1	9223	broad.mit.edu	37	3	65464345	65464345	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:65464345C>T	uc003dmn.2	-	4	1205	c.679G>A	c.(679-681)GAT>AAT	p.D227N	MAGI1_uc003dmm.2_Missense_Mutation_p.D227N|MAGI1_uc003dmo.2_Missense_Mutation_p.D227N|MAGI1_uc003dmp.2_Missense_Mutation_p.D227N|MAGI1_uc010hny.2_Missense_Mutation_p.D111N|MAGI1_uc003dmr.2_Missense_Mutation_p.D227N	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	227	Guanylate kinase-like.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		TTTTGCATATCATTGTAGGAC	0.512													31	123					0	0	1	0	0
LRIG1	26018	broad.mit.edu	37	3	66433743	66433743	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:66433743C>T	uc003dmx.2	-	15	2168	c.2154G>A	c.(2152-2154)GGG>GGA	p.G718G	SLC25A26_uc011bft.1_Intron|LRIG1_uc011bfu.1_Silent_p.G338G|LRIG1_uc003dmw.2_Silent_p.G384G|LRIG1_uc010hnz.2_Silent_p.G434G|LRIG1_uc010hoa.2_Silent_p.G695G	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	718	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		GCGGAGGGTTCCCCGTGGCTT	0.607													26	82					0	0	1	0	0
KBTBD8	84541	broad.mit.edu	37	3	67053666	67053666	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:67053666G>A	uc003dmy.2	+	3	328	c.275G>A	c.(274-276)CGA>CAA	p.R92Q	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	92	BTB.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		AAAGAAGTTCGAATAGTTGGT	0.373													66	144					0	0	1	0	0
KBTBD8	84541	broad.mit.edu	37	3	67053896	67053896	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:67053896G>A	uc003dmy.2	+	3	558	c.505G>A	c.(505-507)GAT>AAT	p.D169N	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	169	BACK.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		GGAACTCGGAGATCGATCAAA	0.383													20	79					0	0	1	0	0
KBTBD8	84541	broad.mit.edu	37	3	67058534	67058534	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:67058534C>T	uc003dmy.2	+	4	1584	c.1531C>T	c.(1531-1533)CGT>TGT	p.R511C	KBTBD8_uc011bfv.1_Missense_Mutation_p.R69C	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	511	Kelch 4.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		TAAATGGACTCGTAAGAAAGA	0.368													34	99					0	0	1	0	0
SUCLG2	8801	broad.mit.edu	37	3	67570915	67570915	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:67570915G>A	uc003dna.3	-	5	589	c.561C>T	c.(559-561)CTC>CTT	p.L187L	SUCLG2_uc010hob.2_Silent_p.L68L	NM_003848	NP_003839	Q96I99	SUCB2_HUMAN	succinate-CoA ligase, GDP-forming beta subunit	187	ATP-grasp.				succinyl-CoA metabolic process|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|GTP binding|succinate-CoA ligase (GDP-forming) activity			central_nervous_system(1)|skin(1)	2		Renal(2;0.00294)|Lung NSC(201;0.012)|Hepatocellular(537;0.121)		BRCA - Breast invasive adenocarcinoma(55;3.53e-05)|Epithelial(33;0.000153)	Succinic acid(DB00139)	CCTTAAAAATGAGCTCCGGGT	0.498													44	94					0	0	1	0	0
FAM19A4	151647	broad.mit.edu	37	3	68802034	68802034	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:68802034G>A	uc003dnh.1	-	4	709	c.266C>T	c.(265-267)GCT>GTT	p.A89V	FAM19A4_uc003dni.1_Missense_Mutation_p.A89V	NM_182522	NP_872328	Q96LR4	F19A4_HUMAN	family with sequence similarity 19 (chemokine	89						extracellular region				skin(2)	2		Lung NSC(201;0.0198)		BRCA - Breast invasive adenocarcinoma(55;1.38e-05)|Epithelial(33;0.000124)|LUSC - Lung squamous cell carcinoma(21;0.0248)|KIRC - Kidney renal clear cell carcinoma(39;0.0729)|Kidney(39;0.0904)		AGAAGGTTGAGCCCGAGTTGT	0.517													28	85					0	0	1	0	0
FAM19A4	151647	broad.mit.edu	37	3	68929890	68929890	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:68929890C>T	uc003dnh.1	-	3	564	c.121G>A	c.(121-123)GGA>AGA	p.G41R	FAM19A4_uc003dni.1_Missense_Mutation_p.G41R	NM_182522	NP_872328	Q96LR4	F19A4_HUMAN	family with sequence similarity 19 (chemokine	41						extracellular region				skin(2)	2		Lung NSC(201;0.0198)		BRCA - Breast invasive adenocarcinoma(55;1.38e-05)|Epithelial(33;0.000124)|LUSC - Lung squamous cell carcinoma(21;0.0248)|KIRC - Kidney renal clear cell carcinoma(39;0.0729)|Kidney(39;0.0904)		CCTGCATGTCCCCGGAGGTGC	0.478													18	55					0	0	1	0	0
UBA3	9039	broad.mit.edu	37	3	69111302	69111302	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:69111302G>A	uc003dno.2	-	10	742	c.722C>T	c.(721-723)TCT>TTT	p.S241F	UBA3_uc003dnq.2_Missense_Mutation_p.S227F|UBA3_uc011bfy.1_Missense_Mutation_p.S64F|UBA3_uc011bfz.1_Missense_Mutation_p.S64F	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	241					protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		CCTGGGCATAGATGCAATGGT	0.368													53	119					0	0	1	0	0
ARL6IP5	10550	broad.mit.edu	37	3	69151000	69151000	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:69151000C>T	uc003dnr.2	+	2	296	c.187C>T	c.(187-189)CCC>TCC	p.P63S		NM_006407	NP_006398	O75915	PRAF3_HUMAN	ADP-ribosylation-like factor 6 interacting	63	Helical; (Potential).				L-glutamate transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.78e-05)|Epithelial(33;0.000818)|LUSC - Lung squamous cell carcinoma(21;0.0118)|Lung(16;0.0189)|KIRC - Kidney renal clear cell carcinoma(39;0.203)|Kidney(39;0.238)		GTTTCTGAGTCCCTTCAACAT	0.438													6	23					0	0	1	0	0
LMOD3	56203	broad.mit.edu	37	3	69171531	69171531	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:69171531C>T	uc003dns.2	-	1	216	c.7G>A	c.(7-9)GAG>AAG	p.E3K	LMOD3_uc003dnt.2_Missense_Mutation_p.E3K	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	3						cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		CTGCTGTGCTCTGACATTATT	0.333													11	21					0	0	1	0	0
FRMD4B	23150	broad.mit.edu	37	3	69230763	69230763	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:69230763G>A	uc003dnv.2	-	21	2428	c.2138C>T	c.(2137-2139)TCC>TTC	p.S713F	FRMD4B_uc003dnw.2_Intron|FRMD4B_uc003dnu.2_Missense_Mutation_p.S365F|FRMD4B_uc011bga.1_Missense_Mutation_p.S557F	NM_015123	NP_055938	Q9Y2L6	FRM4B_HUMAN	FERM domain containing 4B	713						cytoplasm|cytoskeleton	binding			ovary(3)|central_nervous_system(1)	4		Lung NSC(201;0.0138)|Prostate(884;0.11)		BRCA - Breast invasive adenocarcinoma(55;0.000201)|Epithelial(33;0.00141)|LUSC - Lung squamous cell carcinoma(21;0.00999)|Lung(16;0.0182)		TTTGGAGAGGGAGAAAAATGG	0.517													22	65					0	0	1	0	0
MITF	4286	broad.mit.edu	37	3	70014033	70014033	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:70014033C>T	uc003dnz.2	+	10	1313	c.1197C>T	c.(1195-1197)TCC>TCT	p.S399S	MITF_uc011bgb.1_Silent_p.S347S|MITF_uc003doa.2_Silent_p.S398S|MITF_uc003dob.2_Silent_p.S383S|MITF_uc003dod.2_Silent_p.S374S|MITF_uc003doe.2_Silent_p.S292S|MITF_uc003dof.2_Silent_p.S298S	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	405	DNA binding regulation.		S -> P (in WS2A).	S->A,P: Loss of phosphorylation and function.	melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		ATGGACTTTCCCTTATTCCAT	0.373			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						38	96					0	0	1	0	0
FOXP1	27086	broad.mit.edu	37	3	71027107	71027107	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:71027107G>A	uc003dol.2	-	11	1543	c.1220C>T	c.(1219-1221)CCA>CTA	p.P407L	FOXP1_uc003dom.2_Missense_Mutation_p.P331L|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Missense_Mutation_p.P407L|FOXP1_uc003dop.2_Missense_Mutation_p.P407L|FOXP1_uc003doq.1_Missense_Mutation_p.P406L|FOXP1_uc003doi.2_Missense_Mutation_p.P307L|FOXP1_uc003doj.2_Missense_Mutation_p.P307L|FOXP1_uc003dok.2_Missense_Mutation_p.P220L|FOXP1_uc003dor.1_Missense_Mutation_p.P185L	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	407					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		TGGGGTCGTTGGAGTATGAGG	0.557			T	PAX5	ALL								12	156					0	0	1	0	0
GPR27	2850	broad.mit.edu	37	3	71803815	71803815	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:71803815C>T	uc011bge.1	+	1	615	c.615C>T	c.(613-615)CTC>CTT	p.L205L	EIF4E3_uc003dox.2_5'Flank|EIF4E3_uc011bgd.1_5'Flank|EIF4E3_uc010hoc.2_5'UTR	NM_018971	NP_061844	Q9NS67	GPR27_HUMAN	G protein-coupled receptor 27	205	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.78e-05)|Epithelial(33;5.75e-05)|Lung(16;0.0012)|LUSC - Lung squamous cell carcinoma(21;0.00156)		TCCGCCTGCTCTTCTTCATCC	0.761													3	11					0	0	1	0	0
GPR27	2850	broad.mit.edu	37	3	71803825	71803825	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:71803825C>T	uc011bge.1	+	1	625	c.625C>T	c.(625-627)CAC>TAC	p.H209Y	EIF4E3_uc003dox.2_5'Flank|EIF4E3_uc011bgd.1_5'Flank|EIF4E3_uc010hoc.2_5'UTR	NM_018971	NP_061844	Q9NS67	GPR27_HUMAN	G protein-coupled receptor 27	209	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.78e-05)|Epithelial(33;5.75e-05)|Lung(16;0.0012)|LUSC - Lung squamous cell carcinoma(21;0.00156)		CTTCTTCATCCACGACCGCCG	0.761													6	6					0	0	1	0	0
GPR27	2850	broad.mit.edu	37	3	71804292	71804292	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:71804292G>A	uc011bge.1	+	1	1092	c.1092G>A	c.(1090-1092)GCG>GCA	p.A364A	EIF4E3_uc003dox.2_5'Flank|EIF4E3_uc011bgd.1_5'Flank|EIF4E3_uc010hoc.2_5'Flank	NM_018971	NP_061844	Q9NS67	GPR27_HUMAN	G protein-coupled receptor 27	364	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.78e-05)|Epithelial(33;5.75e-05)|Lung(16;0.0012)|LUSC - Lung squamous cell carcinoma(21;0.00156)		CCACCCAGGCGACCCATCCCT	0.632													9	21					0	0	1	0	0
PROK2	60675	broad.mit.edu	37	3	71821914	71821914	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:71821914C>T	uc003dpa.3	-	4	505	c.351G>A	c.(349-351)CGG>CGA	p.R117R	PROK2_uc003doz.3_Silent_p.R96R	NM_001126128	NP_001119600	Q9HC23	PROK2_HUMAN	prokineticin 2 isoform a precursor	117					activation of MAPK activity|angiogenesis|anti-apoptosis|cell proliferation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response|neuropeptide signaling pathway|positive regulation of smooth muscle contraction|sensory perception of pain|spermatogenesis	extracellular region	G-protein-coupled receptor binding				0		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.89e-05)|Epithelial(33;0.000173)|LUSC - Lung squamous cell carcinoma(21;0.00168)|Lung(16;0.00306)		TAAATGAAGTCCGTAAACAGG	0.418													28	82					0	0	1	0	0
SHQ1	55164	broad.mit.edu	37	3	72842128	72842128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:72842128G>A	uc003dpf.2	-	10	1227	c.1120C>T	c.(1120-1122)CCA>TCA	p.P374S	SHQ1_uc010hod.2_Missense_Mutation_p.P285S	NM_018130	NP_060600	Q6PI26	SHQ1_HUMAN	SHQ1 homolog	374					ribonucleoprotein complex assembly	cytosol|nucleoplasm	protein binding			ovary(2)|large_intestine(1)	3		Prostate(10;0.00482)|Lung NSC(201;0.0339)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;9.68e-05)|Epithelial(33;0.000563)|LUSC - Lung squamous cell carcinoma(21;0.00229)|Lung(16;0.00688)|KIRC - Kidney renal clear cell carcinoma(39;0.018)|Kidney(39;0.0213)		ATGTACGCTGGGTCATTTTCC	0.308													9	89					0	0	1	0	0
CNTN3	5067	broad.mit.edu	37	3	74414831	74414831	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:74414831G>A	uc003dpm.1	-	8	1049	c.969C>T	c.(967-969)CTC>CTT	p.L323L		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	323	Ig-like C2-type 4.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		CATCCTTTATGAGTTGAACCC	0.393													74	234					0	0	1	0	0
CNTN3	5067	broad.mit.edu	37	3	74548880	74548880	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:74548880G>A	uc003dpm.1	-	2	192	c.112C>T	c.(112-114)CCT>TCT	p.P38S		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	38	Ig-like C2-type 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		GAACCAACAGGGAAAATGCTG	0.363													11	125					0	0	1	0	0
MIR1324	100302212	broad.mit.edu	37	3	75679997	75679997	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:75679997C>T	hsa-mir-1324|MI0006657	+			c.84C>T																				0						TATGCACTTTCCTGGAGGCTC	0.512													6	55					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77607174	77607174	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:77607174G>A	uc003dpy.3	+	9	1954	c.1311G>A	c.(1309-1311)CTG>CTA	p.L437L	ROBO2_uc003dpz.2_Silent_p.L441L|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.L441L	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	437	Ig-like C2-type 5.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CAGCGTTACTGAAATGTAAAG	0.438													38	77					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77666836	77666836	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:77666836T>G	uc003dpy.3	+	22	4109	c.3466T>G	c.(3466-3468)TCC>GCC	p.S1156A	ROBO2_uc003dpz.2_Missense_Mutation_p.S1160A|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.S1160A|ROBO2_uc003dqa.2_Missense_Mutation_p.S283A	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1156	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TCTTACTCCATCCCCACGGGA	0.488													13	90					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77671544	77671544	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:77671544C>T	uc003dpy.3	+	23	4364	c.3721C>T	c.(3721-3723)CCT>TCT	p.P1241S	ROBO2_uc003dpz.2_Missense_Mutation_p.P1245S|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.P1245S	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1241	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GGACCAGACTCCTGGATCCAG	0.448													19	43					0	0	1	0	0
ROBO1	6091	broad.mit.edu	37	3	78695312	78695312	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:78695312G>A	uc003dqe.2	-	21	3076	c.2868C>T	c.(2866-2868)GTC>GTT	p.V956V	ROBO1_uc003dqb.2_Silent_p.V917V|ROBO1_uc003dqc.2_Silent_p.V911V|ROBO1_uc003dqd.2_Silent_p.V911V|ROBO1_uc010hoh.2_Silent_p.V148V|ROBO1_uc011bgl.1_Silent_p.V528V	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	956	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		CTCCACTGCTGACAGCTTCGC	0.348													27	83					0	0	1	0	0
ROBO1	6091	broad.mit.edu	37	3	78717428	78717428	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:78717428G>A	uc003dqe.2	-	13	1863	c.1655C>T	c.(1654-1656)CCA>CTA	p.P552L	ROBO1_uc003dqb.2_Missense_Mutation_p.P513L|ROBO1_uc003dqc.2_Missense_Mutation_p.P516L|ROBO1_uc003dqd.2_Missense_Mutation_p.P516L|ROBO1_uc010hoh.2_5'UTR|ROBO1_uc011bgl.1_Missense_Mutation_p.P124L|ROBO1_uc003dqf.1_Missense_Mutation_p.P231L	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	552	Extracellular (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		AGTAGGTCTTGGAGGCTGAAC	0.388													39	114					0	0	1	0	0
GBE1	2632	broad.mit.edu	37	3	81699006	81699006	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:81699006G>A	uc003dqg.2	-	5	779	c.496C>T	c.(496-498)CGT>TGT	p.R166C	GBE1_uc011bgm.1_Missense_Mutation_p.R125C	NM_000158	NP_000149	Q04446	GLGB_HUMAN	glucan (1,4-alpha-), branching enzyme 1	166					glucose metabolic process|glycogen biosynthetic process	cytosol	1,4-alpha-glucan branching enzyme activity|cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(3)	3		Lung NSC(201;0.0117)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0654)|Epithelial(33;0.00305)|LUSC - Lung squamous cell carcinoma(29;0.00646)|BRCA - Breast invasive adenocarcinoma(55;0.00813)|Lung(72;0.0129)|KIRC - Kidney renal clear cell carcinoma(39;0.212)|Kidney(39;0.247)		TCACCTTCACGAACCACATAC	0.333									Glycogen_Storage_Disease_type_IV				14	45					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	85935348	85935348	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:85935348G>A	uc003dqj.2	+	4	999	c.373G>A	c.(373-375)GAA>AAA	p.E125K	CADM2_uc003dqk.2_Missense_Mutation_p.E134K|CADM2_uc003dql.2_Missense_Mutation_p.E127K	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	125	Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		AGGTGTTCCTGAAAAGCCTCA	0.393													17	58					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	86010709	86010709	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:86010709C>T	uc003dqj.2	+	7	1481	c.855C>T	c.(853-855)TTC>TTT	p.F285F	CADM2_uc003dqk.2_Silent_p.F294F|CADM2_uc003dql.2_Silent_p.F287F	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	285	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		ACATTCTTTTCCTGAACAAAA	0.433													42	111					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	86010787	86010787	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:86010787C>T	uc003dqj.2	+	7	1559	c.933C>T	c.(931-933)CTC>CTT	p.L311L	CADM2_uc003dqk.2_Silent_p.L320L|CADM2_uc003dql.2_Silent_p.L313L	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	311	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		AATATGTTCTCATTGTGCATG	0.348													21	82					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	86114835	86114835	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:86114835C>T	uc003dqj.2	+	9	1770	c.1144C>T	c.(1144-1146)CTG>TTG	p.L382L	CADM2_uc003dqk.2_Silent_p.L351L|CADM2_uc003dql.2_Silent_p.L384L	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	382	Helical; (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		ATTTGTCACGCTGTGTTCTAT	0.423													12	64					0	0	1	0	0
VGLL3	389136	broad.mit.edu	37	3	86996206	86996206	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:86996206G>A	uc003dqn.2	-	4	1313	c.949C>T	c.(949-951)CAA>TAA	p.Q317*		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	317					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		CTCTTGTCTTGATGCTGTAGA	0.378													10	92					0	0	1	0	0
VGLL3	389136	broad.mit.edu	37	3	87018049	87018049	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:87018049G>A	uc003dqn.2	-	3	992	c.628C>T	c.(628-630)CCT>TCT	p.P210S		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		GATGTCAAAGGATAAGGCCAG	0.527													21	123					0	0	1	0	0
VGLL3	389136	broad.mit.edu	37	3	87027688	87027688	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:87027688G>A	uc003dqn.2	-	2	755	c.391C>T	c.(391-393)CCC>TCC	p.P131S		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		CGCCATAGGGGGGTTAGCCCC	0.507													41	93					0	0	1	0	0
CHMP2B	25978	broad.mit.edu	37	3	87302653	87302653	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:87302653C>T	uc003dqp.3	+	5	784	c.524C>T	c.(523-525)TCT>TTT	p.S175F	CHMP2B_uc011bgn.1_Missense_Mutation_p.S134F	NM_014043	NP_054762	Q9UQN3	CHM2B_HUMAN	chromatin modifying protein 2B	175					cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane|mitochondrion|nucleus	protein domain specific binding			skin(2)|ovary(1)	3	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		ATTGAAATTTCTGGAAAGGTA	0.353													6	53					0	0	1	0	0
HTR1F	3355	broad.mit.edu	37	3	88039932	88039932	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:88039932G>A	uc003dqr.2	+	2	191	c.33G>A	c.(31-33)TTG>TTA	p.L11L		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	11	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	ATCAAAACTTGACCTCAGAGG	0.373													36	120					0	0	1	0	0
EPHA3	2042	broad.mit.edu	37	3	89156913	89156913	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:89156913C>T	uc003dqy.2	+	1	240	c.15C>T	c.(13-15)CTC>CTT	p.L5L	EPHA3_uc003dqx.1_Silent_p.L5L|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	5						extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		ATTGTCAGCTCTCCATCCTCC	0.562										TSP Lung(6;0.00050)			30	130					0	0	1	0	0
EPHA3	2042	broad.mit.edu	37	3	89259263	89259263	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:89259263G>A	uc003dqy.2	+	3	632	c.407G>A	c.(406-408)CGA>CAA	p.R136Q	EPHA3_uc003dqx.1_Missense_Mutation_p.R136Q|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	136	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GTGAAATTTCGAGAGCATCAG	0.418										TSP Lung(6;0.00050)			33	168					0	0	1	0	0
EPHA3	2042	broad.mit.edu	37	3	89391132	89391132	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:89391132C>T	uc003dqy.2	+	5	1423	c.1198C>T	c.(1198-1200)CTG>TTG	p.L400L	EPHA3_uc003dqx.1_Silent_p.L400L|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	400	Extracellular (Potential).|Fibronectin type-III 1.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GACAGACCTTCTGGCACATAC	0.507										TSP Lung(6;0.00050)			26	54					0	0	1	0	0
PROS1	5627	broad.mit.edu	37	3	93615517	93615517	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:93615517G>A	uc003drb.3	-	9	1209	c.868C>T	c.(868-870)CCC>TCC	p.P290S	PROS1_uc010hoo.2_Missense_Mutation_p.P159S|PROS1_uc003dqz.3_Missense_Mutation_p.P159S	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	290					leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	AGGTTCAAGGGAAGGCACACT	0.368													35	166					0	0	1	0	0
LOC255025	255025	broad.mit.edu	37	3	94890827	94890827	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:94890827G>A	uc003drn.2	+	3		c.291G>A								Homo sapiens hypothetical protein LOC255025, mRNA (cDNA clone IMAGE:5267157).												0						CAACATCAATGGGGGGTGGAA	0.478													14	35					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	95374164	95374164	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:95374164C>T	uc003dro.1	-	5		c.1698G>A								Homo sapiens cDNA FLJ34909 fis, clone NT2RI2009301, moderately similar to BIFUNCTIONAL METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL PRECURSOR.																		GGAGTATATCCATGAGATATT	0.403													18	43					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	95374429	95374429	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:95374429G>A	uc003dro.1	-	5		c.1433C>T								Homo sapiens cDNA FLJ34909 fis, clone NT2RI2009301, moderately similar to BIFUNCTIONAL METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL PRECURSOR.																		AAGCATTGCAGATCTTTCTCT	0.398													23	90					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	96533503	96533503	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:96533503C>T	uc010how.1	+	1	79	c.36C>T	c.(34-36)TCC>TCT	p.S12S	EPHA6_uc003drp.1_Silent_p.S12S	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	Error:Variant_position_missing_in_Q9UF33_after_alignment						integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CGAGGAGCTCCCCGGCGCCGC	0.711													9	24					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	96706525	96706525	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:96706525C>T	uc010how.1	+	3	845	c.802C>T	c.(802-804)CGT>TGT	p.R268C	EPHA6_uc003drp.1_Missense_Mutation_p.R268C	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	173	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity	p.R174C(1)		stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CACTGAAATTCGTGAGGTGGG	0.443													89	238					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	96706530	96706530	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:96706530G>A	uc010how.1	+	3	850	c.807G>A	c.(805-807)GAG>GAA	p.E269E	EPHA6_uc003drp.1_Silent_p.E269E	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	174	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AAATTCGTGAGGTGGGGCCTA	0.448													52	283					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	96962966	96962966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:96962966C>T	uc010how.1	+	5	1484	c.1441C>T	c.(1441-1443)CGC>TGC	p.R481C	EPHA6_uc003drp.1_Missense_Mutation_p.R481C	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	386	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGGAGGACTCCGCTTCATCCC	0.448													19	46					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	97167502	97167502	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97167502C>T	uc010how.1	+	7	1865	c.1822C>T	c.(1822-1824)CAC>TAC	p.H608Y	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_5'UTR|EPHA6_uc003drs.3_5'UTR|EPHA6_uc003drr.3_5'UTR|EPHA6_uc003drt.2_5'UTR|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	513	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						ATATGTATTTCACATCCGAGT	0.443													13	100					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	97329689	97329689	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97329689C>T	uc010how.1	+	13	2608	c.2565C>T	c.(2563-2565)TCC>TCT	p.S855S	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Silent_p.S221S|EPHA6_uc003drs.3_Silent_p.S247S|EPHA6_uc003drr.3_Silent_p.S247S|EPHA6_uc003drt.2_Silent_p.S247S|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	760	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CCCTAGACTCCTTTTTGCGGG	0.333													22	61					0	0	1	0	0
ARL6	84100	broad.mit.edu	37	3	97503890	97503890	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97503890C>T	uc003drv.2	+	6	659	c.346C>T	c.(346-348)CCA>TCA	p.P116S	ARL6_uc003drw.2_RNA|ARL6_uc003dru.2_Missense_Mutation_p.P116S|ARL6_uc010hoy.2_Missense_Mutation_p.P116S	NM_177976	NP_816931	Q9H0F7	ARL6_HUMAN	ADP-ribosylation factor-like 6	116					cilium assembly|determination of left/right symmetry|melanosome transport|protein polymerization|protein targeting to membrane|small GTPase mediated signal transduction|visual perception|Wnt receptor signaling pathway	axonemal microtubule|cilium axoneme|cilium membrane|membrane coat|microtubule basal body	GTP binding|metal ion binding|phospholipid binding|protein binding				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		LUSC - Lung squamous cell carcinoma(29;0.0118)|Lung(72;0.0189)		TCTGAATCATCCAGGTATGTG	0.343									Bardet-Biedl_syndrome				15	74					0	0	1	0	0
CRYBG3	131544	broad.mit.edu	37	3	97596782	97596782	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97596782C>T	uc003drx.2	+	1	964	c.900C>T	c.(898-900)TCC>TCT	p.S300S		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						AAAGTCATTCCTCAGAAAAAG	0.403													9	98					0	0	1	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806871	97806871	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97806871C>T	uc011bgs.1	+	1	855	c.855C>T	c.(853-855)CCC>CCT	p.P285P		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTATAATTCCCCTGCTAAACC	0.373													16	48					0	0	1	0	0
OR5H1	26341	broad.mit.edu	37	3	97851545	97851545	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97851545G>A	uc011bgt.1	+	1	4	c.4G>A	c.(4-6)GAA>AAA	p.E2K		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TGAGGACATGGAAGAGGAAAA	0.398													62	147					0	0	1	0	0
OR5H1	26341	broad.mit.edu	37	3	97851872	97851872	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97851872G>A	uc011bgt.1	+	1	331	c.331G>A	c.(331-333)GAA>AAA	p.E111K		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TGTAACCACGGAATGTTTTCT	0.408													94	220					0	0	1	0	0
OR5H1	26341	broad.mit.edu	37	3	97852271	97852271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97852271C>T	uc011bgt.1	+	1	730	c.730C>T	c.(730-732)CAT>TAT	p.H244Y		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CTGTGGAGCCCATCTCTTCTC	0.408													50	127					0	0	1	0	0
OR5H14	403273	broad.mit.edu	37	3	97868352	97868352	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97868352G>A	uc003dsg.1	+	1	123	c.123G>A	c.(121-123)GGG>GGA	p.G41G		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCATCATGGGGAATCTTGGTC	0.403													101	281					0	0	1	0	0
OR5H15	403274	broad.mit.edu	37	3	97887590	97887590	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97887590G>A	uc011bgu.1	+	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTTCTCACAGGATTTTTATAT	0.393													64	191					0	0	1	0	0
OR5H15	403274	broad.mit.edu	37	3	97887664	97887664	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97887664G>A	uc011bgu.1	+	1	121	c.121G>A	c.(121-123)GGG>AGG	p.G41R		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CACCATCATGGGGAATCTTGG	0.408													89	229					0	0	1	0	0
OR5H15	403274	broad.mit.edu	37	3	97887907	97887907	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97887907C>T	uc011bgu.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGCATATGATCGCTATGTAGC	0.378													27	162					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983180	97983180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97983180G>A	uc003dsi.1	+	1	52	c.52G>A	c.(52-54)GAA>AAA	p.E18K		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						TGAGGAGATGGAAGAGGAAAA	0.388													73	153					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983578	97983578	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97983578C>T	uc003dsi.1	+	1	450	c.450C>T	c.(448-450)GTC>GTT	p.V150V		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	150	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						TTTATCCAGTCATTATGACCA	0.363													93	61					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983591	97983591	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97983591G>A	uc003dsi.1	+	1	463	c.463G>A	c.(463-465)GAA>AAA	p.E155K		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	155	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						TATGACCAATGAACTATGCAT	0.363													44	103					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983855	97983855	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97983855G>A	uc003dsi.1	+	1	727	c.727G>A	c.(727-729)GAA>AAA	p.E243K		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	243	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						TACAATCTTAGAAAAGAAGTC	0.343													20	41					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98002110	98002110	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98002110C>T	uc003dsj.1	+	1	379	c.379C>T	c.(379-381)CGC>TGC	p.R127C		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GGCATATGATCGCTATGTAGC	0.378													9	125					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98002441	98002441	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98002441G>A	uc003dsj.1	+	1	710	c.710G>A	c.(709-711)AGA>AAA	p.R237K		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AAGTCTGTTAGAGGCGTAAGG	0.393													22	67					0	0	1	0	0
OR5K4	403278	broad.mit.edu	37	3	98072952	98072952	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98072952C>T	uc011bgv.1	+	1	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TAGAGAATTTCTTTTCTGAGG	0.433													165	356					0	0	1	0	0
OR5K3	403277	broad.mit.edu	37	3	98109721	98109721	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98109721C>T	uc011bgw.1	+	1	212	c.212C>T	c.(211-213)TCC>TTC	p.S71F		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGATGGATTCCTGCTGTTCC	0.393													106	289					0	0	1	0	0
OR5K3	403277	broad.mit.edu	37	3	98110023	98110023	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98110023C>T	uc011bgw.1	+	1	514	c.514C>T	c.(514-516)CAT>TAT	p.H172Y		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	172	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTGGGTCTCATCAAATCAA	0.388													38	103					0	0	1	0	0
OR5K3	403277	broad.mit.edu	37	3	98110041	98110041	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98110041T>A	uc011bgw.1	+	1	532	c.532T>A	c.(532-534)TTC>ATC	p.F178I		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAATCATTTTTTCTGTGATGT	0.363													33	93					0	0	1	0	0
OR5K1	26339	broad.mit.edu	37	3	98189039	98189039	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98189039C>T	uc003dsm.2	+	1	619	c.619C>T	c.(619-621)CAA>TAA	p.Q207*		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						AGGTTCAGTTCAAGTCTTTAC	0.343													53	148					0	0	1	0	0
OR5K1	26339	broad.mit.edu	37	3	98189116	98189116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98189116G>A	uc003dsm.2	+	1	696	c.696G>A	c.(694-696)GAG>GAA	p.E232E		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						AATCCAAAGAGGGAAGGGCCA	0.343													42	97					0	0	1	0	0
OR5K1	26339	broad.mit.edu	37	3	98189325	98189325	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98189325G>A	uc003dsm.2	+	1	905	c.905G>A	c.(904-906)AGA>AAA	p.R302K		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						AGTGTCTTAAGAAAAATTCTG	0.294													14	46					0	0	1	0	0
GPR15	2838	broad.mit.edu	37	3	98251249	98251249	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98251249C>T	uc011bgy.1	+	1	372	c.372C>T	c.(370-372)CTC>CTT	p.L124L		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	124	Helical; Name=3; (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)		Lung(72;0.246)		TCCTCCTGCTCACTTGCATGA	0.512													9	61					0	0	1	0	0
CPOX	1371	broad.mit.edu	37	3	98299547	98299547	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98299547G>A	uc003dsx.2	-	7	1438	c.1345C>T	c.(1345-1347)CCA>TCA	p.P449S		NM_000097	NP_000088	P36551	HEM6_HUMAN	coproporphyrinogen oxidase precursor	449						mitochondrial intermembrane space	coproporphyrinogen oxidase activity|protein homodimerization activity				0						CAGTCCCTTGGATGGCGTAGA	0.512													17	45					0	0	1	0	0
CPOX	1371	broad.mit.edu	37	3	98312019	98312019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98312019G>A	uc003dsx.2	-	1	423	c.330C>T	c.(328-330)GCC>GCT	p.A110A	CPOX_uc011bgz.1_Silent_p.A110A	NM_000097	NP_000088	P36551	HEM6_HUMAN	coproporphyrinogen oxidase precursor	110						mitochondrial intermembrane space	coproporphyrinogen oxidase activity|protein homodimerization activity				0						CCAGCGAAGTGGCCCGCGTCC	0.726													8	15					0	0	1	0	0
CPOX	1371	broad.mit.edu	37	3	98312041	98312041	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:98312041G>A	uc003dsx.2	-	1	401	c.308C>T	c.(307-309)CCT>CTT	p.P103L	CPOX_uc011bgz.1_Missense_Mutation_p.P103L	NM_000097	NP_000088	P36551	HEM6_HUMAN	coproporphyrinogen oxidase precursor	103						mitochondrial intermembrane space	coproporphyrinogen oxidase activity|protein homodimerization activity				0						CGAGGTCTTAGGCAACATCTC	0.741													6	12					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99509613	99509613	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:99509613C>T	uc003dtg.1	+	4	332	c.87C>T	c.(85-87)GCC>GCT	p.A29A	COL8A1_uc003dth.1_Silent_p.A29A|COL8A1_uc003dti.1_Silent_p.A29A	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	29	Nonhelical region (NC2).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						AGGCTGGTGCCTACTATGGGA	0.562													26	42					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99513335	99513335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:99513335G>A	uc003dtg.1	+	5	835	c.590G>A	c.(589-591)GGA>GAA	p.G197E	COL8A1_uc003dth.1_Missense_Mutation_p.G197E|COL8A1_uc003dti.1_Missense_Mutation_p.G198E	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	197	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GGACCACAAGGACCTCCAGGG	0.587													18	46					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99513509	99513509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:99513509G>A	uc003dtg.1	+	5	1009	c.764G>A	c.(763-765)GGG>GAG	p.G255E	COL8A1_uc003dth.1_Missense_Mutation_p.G255E|COL8A1_uc003dti.1_Missense_Mutation_p.G256E	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	255	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GGTGTAAAGGGGCCTCCAGGG	0.647													40	72					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99513605	99513605	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:99513605G>A	uc003dtg.1	+	5	1105	c.860G>A	c.(859-861)GGA>GAA	p.G287E	COL8A1_uc003dth.1_Missense_Mutation_p.G287E|COL8A1_uc003dti.1_Missense_Mutation_p.G288E	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	287	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GGCCCCCTGGGAAAGCCAGGG	0.667													9	32					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99513660	99513660	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:99513660G>A	uc003dtg.1	+	5	1160	c.915G>A	c.(913-915)GGG>GGA	p.G305G	COL8A1_uc003dth.1_Silent_p.G305G|COL8A1_uc003dti.1_Silent_p.G306G	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	305	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GGGTACCGGGGGTTCAAGGAC	0.642													16	30					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99514879	99514879	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:99514879G>A	uc003dtg.1	+	5	2379	c.2134G>A	c.(2134-2136)GAC>AAC	p.D712N	COL8A1_uc003dth.1_Missense_Mutation_p.D712N|COL8A1_uc003dti.1_Missense_Mutation_p.D713N	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	712	C1q.|Nonhelical region (NC1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						CAGGCCCGGAGACCGGGTGTT	0.537													20	42					0	0	1	0	0
FILIP1L	11259	broad.mit.edu	37	3	99568383	99568383	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:99568383C>T	uc003dtm.2	-	5	2600	c.2137G>A	c.(2137-2139)GGG>AGG	p.G713R	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.G713R|FILIP1L_uc010hpf.2_Missense_Mutation_p.G289R|FILIP1L_uc010hpg.2_Missense_Mutation_p.G473R|FILIP1L_uc003dtn.2_Missense_Mutation_p.G473R|FILIP1L_uc003dtp.1_Missense_Mutation_p.G473R	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	713	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						GAGAGGTGCCCTGACTTAGCT	0.408													11	144					0	0	1	0	0
GPR128	84873	broad.mit.edu	37	3	100354555	100354555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:100354555C>T	uc003duc.2	+	5	750	c.482C>T	c.(481-483)TCT>TTT	p.S161F	GPR128_uc011bhc.1_5'UTR	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	161	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						AATAACATTTCTTCTGAAGTC	0.368													18	88					0	0	1	0	0
GPR128	84873	broad.mit.edu	37	3	100378688	100378688	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:100378688G>A	uc003duc.2	+	14	2247	c.1979_splice	c.e14+1	p.S660_splice	GPR128_uc011bhc.1_Splice_Site_p.S361_splice|GPR128_uc003dud.2_Splice_Site_p.S183_splice	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor						neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						ACCTGACAAGGTAAGATTCCC	0.428													16	45					0	0	1	0	0
TFG	10342	broad.mit.edu	37	3	100467173	100467173	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:100467173C>T	uc003due.2	+	8	1450	c.1001C>T	c.(1000-1002)TCT>TTT	p.S334F	TFG_uc003duf.2_Missense_Mutation_p.S334F|TFG_uc003dug.2_Missense_Mutation_p.S330F|TFG_uc003duh.2_Missense_Mutation_p.S330F|TFG_uc003dui.2_Missense_Mutation_p.S334F	NM_006070	NP_006061	Q92734	TFG_HUMAN	TRK-fused	334					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm	signal transducer activity		TFG/ALK(7)	haematopoietic_and_lymphoid_tissue(7)|lung(2)|large_intestine(1)|prostate(1)	11						GCCCAAACTTCTCAGCCTACT	0.522			T	NTRK1|ALK	papillary thyroid|ALCL|NSCLC								34	109					0	0	1	0	0
ABI3BP	25890	broad.mit.edu	37	3	100585734	100585734	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:100585734C>T	uc003dun.2	-	10	1083	c.998G>A	c.(997-999)CGA>CAA	p.R333Q	ABI3BP_uc003duo.2_Missense_Mutation_p.R326Q|ABI3BP_uc003dup.3_Missense_Mutation_p.R326Q	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	333						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						TGTTGTGGGTCGTGCTGAGAT	0.358													16	40					0	0	1	0	0
ABI3BP	25890	broad.mit.edu	37	3	100594366	100594366	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:100594366C>T	uc003dun.2	-	8	909	c.824G>A	c.(823-825)GGA>GAA	p.G275E	ABI3BP_uc003duo.2_Missense_Mutation_p.G268E|ABI3BP_uc003dup.3_Missense_Mutation_p.G268E	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	275						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						TATCACTCCTCCCAGTGGAGC	0.438													15	51					0	0	1	0	0
ABI3BP	25890	broad.mit.edu	37	3	100594382	100594382	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:100594382C>T	uc003dun.2	-	8	893	c.808G>A	c.(808-810)GAA>AAA	p.E270K	ABI3BP_uc003duo.2_Missense_Mutation_p.E263K|ABI3BP_uc003dup.3_Missense_Mutation_p.E263K	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	270						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						GGAGCTTTTTCTGGGGATTTA	0.438													19	45					0	0	1	0	0
ABI3BP	25890	broad.mit.edu	37	3	100645220	100645220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:100645220C>T	uc003dun.2	-	2	291	c.206G>A	c.(205-207)GGA>GAA	p.G69E	ABI3BP_uc003duo.2_Missense_Mutation_p.G62E|ABI3BP_uc003dup.3_Missense_Mutation_p.G62E	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	69						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						GCTGCCATATCCCAGGAGAAG	0.473													14	70					0	0	1	0	0
SENP7	57337	broad.mit.edu	37	3	101060585	101060585	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:101060585G>A	uc003dut.2	-	15	2256	c.2145C>T	c.(2143-2145)TTC>TTT	p.F715F	SENP7_uc003duu.2_Silent_p.F650F|SENP7_uc003duv.2_Silent_p.F682F|SENP7_uc003duw.2_Silent_p.F649F|SENP7_uc003dux.2_Silent_p.F551F	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	715					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						GCTTCTGCAGGAAGGTGTAAG	0.438													18	48					0	0	1	0	0
SENP7	57337	broad.mit.edu	37	3	101086823	101086823	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:101086823G>A	uc003dut.2	-	8	940	c.829C>T	c.(829-831)CTC>TTC	p.L277F	SENP7_uc003duu.2_Missense_Mutation_p.L212F|SENP7_uc003duv.2_Missense_Mutation_p.L244F|SENP7_uc003duw.2_Missense_Mutation_p.L211F|SENP7_uc003dux.2_Missense_Mutation_p.L113F	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	277					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						TCCTGTTCGAGATGATCACAA	0.338													28	88					0	0	1	0	0
SENP7	57337	broad.mit.edu	37	3	101117834	101117834	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:101117834G>A	uc003dut.2	-	6	659	c.548C>T	c.(547-549)CCA>CTA	p.P183L	SENP7_uc003duu.2_Intron|SENP7_uc003duv.2_Missense_Mutation_p.P150L|SENP7_uc003duw.2_Missense_Mutation_p.P117L|SENP7_uc003dux.2_Intron	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	183					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						AGTTACAGGTGGGGTCCTTAT	0.403													33	75					0	0	1	0	0
ZBTB11	27107	broad.mit.edu	37	3	101390172	101390172	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:101390172G>A	uc003dve.3	-	3	810	c.580C>T	c.(580-582)CCA>TCA	p.P194S	ZBTB11_uc003dvf.2_3'UTR	NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	194					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CAATGTTTTGGAGAAGAACGT	0.368													50	151					0	0	1	0	0
LOC285359	285359	broad.mit.edu	37	3	101432057	101432057	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:101432057C>T	uc003dvj.2	+	1		c.780C>T				NR_002941				Homo sapiens cDNA FLJ12205 fis, clone MAMMA1000931.												0						CTATCACATGCCGAACTTTCT	0.398													4	26					0	0	1	0	0
FAM55C	91775	broad.mit.edu	37	3	101540472	101540472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:101540472C>T	uc003dvn.2	+	8	1991	c.1354C>T	c.(1354-1356)CCT>TCT	p.P452S	FAM55C_uc010hpn.2_Missense_Mutation_p.P452S	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	452						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						CAGCACCTTCCCTTTGGAAGT	0.547													20	58					0	0	1	0	0
ZPLD1	131368	broad.mit.edu	37	3	102175092	102175092	+	Missense_Mutation	SNP	G	A	A	rs149996665		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:102175092G>A	uc003dvs.1	+	11	1265	c.383G>A	c.(382-384)GGA>GAA	p.G128E	ZPLD1_uc003dvt.1_Missense_Mutation_p.G144E|ZPLD1_uc011bhg.1_Missense_Mutation_p.G128E	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	128	ZP.|Extracellular (Potential).					integral to membrane		p.G144E(1)		ovary(2)|skin(2)|central_nervous_system(1)	5						GTGCAAGTAGGAAATATTTCA	0.358													48	102					0	0	1	0	0
ZPLD1	131368	broad.mit.edu	37	3	102183090	102183090	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:102183090C>T	uc003dvs.1	+	14	1638	c.756C>T	c.(754-756)TTC>TTT	p.F252F	ZPLD1_uc003dvt.1_Silent_p.F268F|ZPLD1_uc011bhg.1_Silent_p.F252F	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	252	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						ATGATCTTTTCCTTAGGTAAG	0.313													35	90					0	0	1	0	0
ALCAM	214	broad.mit.edu	37	3	105252524	105252525	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:105252524_105252525CC>TT	uc003dvx.2	+	5	1077_1078	c.537_538CC>TT	c.(535-540)CCCCTT>CCTTTT	p.L180F	ALCAM_uc003dvw.1_Missense_Mutation_p.L180F|ALCAM_uc003dvy.2_Missense_Mutation_p.L180F|ALCAM_uc011bhh.1_Missense_Mutation_p.L129F|ALCAM_uc010hpp.2_5'UTR	NM_001627	NP_001618	Q13740	CD166_HUMAN	activated leukocyte cell adhesion molecule	180	Extracellular (Potential).|Ig-like V-type 2.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(2)|breast(1)	3						TGCTACATCCCCTTGAAGGAGG	0.411													29	90					0	0	1	0	0
ALCAM	214	broad.mit.edu	37	3	105258925	105258925	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:105258925G>A	uc003dvx.2	+	7	1377	c.837G>A	c.(835-837)GAG>GAA	p.E279E	ALCAM_uc003dvw.1_Silent_p.E279E|ALCAM_uc003dvy.2_Silent_p.E279E|ALCAM_uc011bhh.1_Silent_p.E228E|ALCAM_uc010hpp.2_Intron	NM_001627	NP_001618	Q13740	CD166_HUMAN	activated leukocyte cell adhesion molecule	279	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(2)|breast(1)	3						CTCCCCCAGAGGAATTTTTGT	0.393													20	188					0	0	1	0	0
CBLB	868	broad.mit.edu	37	3	105412371	105412371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:105412371G>A	uc003dwc.2	-	13	2343	c.2021C>T	c.(2020-2022)CCT>CTT	p.P674L	CBLB_uc011bhi.1_Missense_Mutation_p.P696L|CBLB_uc003dwd.1_Missense_Mutation_p.P674L|CBLB_uc003dwe.1_Missense_Mutation_p.P674L	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	674	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						AACTGGAGGAGGAGGAGAAAG	0.413			Mis S		AML								20	32					0	0	1	0	0
CCDC54	84692	broad.mit.edu	37	3	107096780	107096780	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:107096780G>A	uc003dwi.1	+	1	593	c.346G>A	c.(346-348)GAA>AAA	p.E116K		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	116	Potential.										0						GAATGTTAATGAAGACAAACA	0.378													19	43					0	0	1	0	0
CCDC54	84692	broad.mit.edu	37	3	107097124	107097124	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:107097124G>A	uc003dwi.1	+	1	937	c.690G>A	c.(688-690)AGG>AGA	p.R230R		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	230											0						ATGCATCAAGGAGCTTTGAAA	0.368													54	122					0	0	1	0	0
BBX	56987	broad.mit.edu	37	3	107491536	107491536	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:107491536C>T	uc010hpr.2	+	11	1295	c.968C>T	c.(967-969)TCC>TTC	p.S323F	BBX_uc003dwk.3_Missense_Mutation_p.S323F|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Missense_Mutation_p.S344F|BBX_uc003dwm.3_Missense_Mutation_p.S323F|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	323					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			GCAAAAGAATCCGATGGTGGA	0.348													14	78					0	0	1	0	0
BBX	56987	broad.mit.edu	37	3	107517425	107517425	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:107517425C>T	uc010hpr.2	+	16	2736	c.2409C>T	c.(2407-2409)ATC>ATT	p.I803I	BBX_uc003dwk.3_Silent_p.I773I|BBX_uc003dwl.3_Missense_Mutation_p.S467F|BBX_uc003dwm.3_Silent_p.I773I|BBX_uc003dwo.3_Missense_Mutation_p.S123F	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	803					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			TTAAAAATATCCCATCCATTT	0.403													26	79					0	0	1	0	0
IFT57	55081	broad.mit.edu	37	3	107937477	107937477	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:107937477A>G	uc003dwx.3	-	3	647	c.399T>C	c.(397-399)CCT>CCC	p.P133P		NM_018010	NP_060480	Q9NWB7	IFT57_HUMAN	estrogen-related receptor beta like 1	133					activation of caspase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cilium|microtubule basal body	DNA binding|protein binding			ovary(1)|skin(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(3;0.0428)|Epithelial(53;0.246)			TTAATTTTGAAGGAGGAAAAT	0.328													11	40					0	0	1	0	0
HHLA2	11148	broad.mit.edu	37	3	108070663	108070663	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108070663G>A	uc003dwy.3	+	3	170	c.3G>A	c.(1-3)ATG>ATA	p.M1I	HHLA2_uc011bhl.1_Missense_Mutation_p.E25K|HHLA2_uc010hpu.2_Missense_Mutation_p.M1I|HHLA2_uc003dwz.2_Missense_Mutation_p.M1I	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	1						integral to membrane				ovary(1)	1						CACAAGACATGAAGGCACAGA	0.303													17	23					0	0	1	0	0
HHLA2	11148	broad.mit.edu	37	3	108076871	108076871	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108076871C>T	uc003dwy.3	+	6	1033	c.866C>T	c.(865-867)TCA>TTA	p.S289L	HHLA2_uc011bhl.1_Missense_Mutation_p.S225L|HHLA2_uc010hpu.2_Missense_Mutation_p.S289L|HHLA2_uc003dwz.2_Missense_Mutation_p.S289L	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	289	Ig-like V-type 2.					integral to membrane				ovary(1)	1						TCCCGATTCTCATGGAACAAA	0.373													44	166					0	0	1	0	0
HHLA2	11148	broad.mit.edu	37	3	108076874	108076874	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108076874G>A	uc003dwy.3	+	6	1036	c.869G>A	c.(868-870)TGG>TAG	p.W290*	HHLA2_uc011bhl.1_Nonsense_Mutation_p.W226*|HHLA2_uc010hpu.2_Nonsense_Mutation_p.W290*|HHLA2_uc003dwz.2_Nonsense_Mutation_p.W290*	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	290	Ig-like V-type 2.					integral to membrane				ovary(1)	1						CGATTCTCATGGAACAAAGAG	0.373													63	149					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108112947	108112947	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108112947C>T	uc003dxa.1	-	37	5307	c.5250G>A	c.(5248-5250)CAG>CAA	p.Q1750Q		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1750	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CAGCTTCTTTCTGCATCCGGG	0.488													51	82					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108117950	108117950	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108117950G>A	uc003dxa.1	-	35	5018	c.4961C>T	c.(4960-4962)TCC>TTC	p.S1654F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1654	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTGGCCCAGGGATTTGGTTGC	0.468													25	61					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108124267	108124267	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108124267G>A	uc003dxa.1	-	34	4771	c.4714C>T	c.(4714-4716)CAT>TAT	p.H1572Y		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1572	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AGCTGGAAATGAAGAATCTTG	0.318													8	42					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108129689	108129689	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108129689C>T	uc003dxa.1	-	32	4353	c.4296G>A	c.(4294-4296)CAG>CAA	p.Q1432Q		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1432	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CCAGCTGCAGCTGGTGCCTGG	0.622													17	41					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108147413	108147413	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108147413C>T	uc003dxa.1	-	28	3745	c.3688G>A	c.(3688-3690)GAA>AAA	p.E1230K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1230	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTGTCTTTTTCCAGTTTCTGC	0.488													55	105					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108156452	108156452	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108156452C>T	uc003dxa.1	-	26	3287	c.3230G>A	c.(3229-3231)AGT>AAT	p.S1077N		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1077	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GTTCTCCATACTTTCCCGATT	0.483													53	205					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108156525	108156525	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108156525C>T	uc003dxa.1	-	26	3214	c.3157G>A	c.(3157-3159)GAG>AAG	p.E1053K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1053	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GCTTTTCTCTCCTGCTCAAGG	0.423													18	179					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108175647	108175647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108175647G>A	uc003dxa.1	-	20	2221	c.2164C>T	c.(2164-2166)CCA>TCA	p.P722S		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	722	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AGTCGGTTTGGAAAACCTTCA	0.438													13	178					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108178243	108178243	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108178243C>T	uc003dxa.1	-	19	2103	c.2046G>A	c.(2044-2046)GTG>GTA	p.V682V		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	682	Myosin head-like.|Actin-binding (By similarity).					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTATGCATCTCACAAAATGAG	0.303													14	40					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108214637	108214637	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108214637G>A	uc003dxa.1	-	8	818	c.761C>T	c.(760-762)TCC>TTC	p.S254F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	254	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AAAACGAGAGGAGTTGTCATT	0.338													7	26					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108216912	108216912	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108216912G>A	uc003dxa.1	-	7	722	c.665C>T	c.(664-666)TCC>TTC	p.S222F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	222	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTTTTTCCTGGATTCAATCAT	0.433													25	164					0	0	1	0	0
KIAA1524	57650	broad.mit.edu	37	3	108278674	108278674	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108278674G>A	uc003dxb.3	-	16	2212	c.1943C>T	c.(1942-1944)GCT>GTT	p.A648V		NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	648	Potential.					cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						AAGGGCTAGAGCTTTTGTTTC	0.358													15	46					0	0	1	0	0
DZIP3	9666	broad.mit.edu	37	3	108363052	108363052	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108363052C>T	uc003dxd.2	+	14	1605	c.1183C>T	c.(1183-1185)CAT>TAT	p.H395Y	DZIP3_uc003dxf.1_Missense_Mutation_p.H395Y|DZIP3_uc011bhm.1_Intron|DZIP3_uc003dxe.1_Missense_Mutation_p.H395Y|DZIP3_uc003dxg.1_Missense_Mutation_p.H118Y	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	395					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						TTATTTCTATCATCTGCTTCA	0.303													24	67					0	0	1	0	0
RETNLB	84666	broad.mit.edu	37	3	108475956	108475956	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108475956G>A	uc003dxh.2	-	1	175	c.77C>T	c.(76-78)TCC>TTC	p.S26F		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	26					cell proliferation	extracellular region	hormone activity			skin(1)	1						GGAGTCTAAGGAACACTGAGT	0.532													12	21					0	0	1	0	0
TRAT1	50852	broad.mit.edu	37	3	108541781	108541781	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108541781G>A	uc003dxi.1	+	1	151	c.7G>A	c.(7-9)GGA>AGA	p.G3R	TRAT1_uc010hpx.1_Missense_Mutation_p.D3N	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	3	Extracellular (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						AAGCATGTCAGGTAAGTGGCA	0.313													39	128					0	0	1	0	0
TRAT1	50852	broad.mit.edu	37	3	108549612	108549612	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108549612G>A	uc003dxi.1	+	2	247	c.103G>A	c.(103-105)GAA>AAA	p.E35K	TRAT1_uc010hpx.1_Intron	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	35	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						CCACTATGTGGAAAAGCAACG	0.428													46	86					0	0	1	0	0
TRAT1	50852	broad.mit.edu	37	3	108565964	108565964	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108565964G>A	uc003dxi.1	+	4	346	c.202G>A	c.(202-204)GAT>AAT	p.D68N	TRAT1_uc010hpx.1_Missense_Mutation_p.D31N	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	68	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						TAACTTAGATGATATGATTTC	0.259													17	80					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108682331	108682331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108682331C>T	uc003dxl.2	-	27	2816	c.2729G>A	c.(2728-2730)AGA>AAA	p.R910K	MORC1_uc011bhn.1_Missense_Mutation_p.R889K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	910	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						AGAGATTTTTCTTTTATTTTC	0.299													34	144					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108682435	108682435	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108682435G>A	uc003dxl.2	-	27	2712	c.2625C>T	c.(2623-2625)GTC>GTT	p.V875V	MORC1_uc011bhn.1_Silent_p.V854V	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	875					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTTCATATTGGACCATGTAAG	0.284													9	48					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108690226	108690226	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108690226G>A	uc003dxl.2	-	25	2588	c.2501C>T	c.(2500-2502)CCT>CTT	p.P834L	MORC1_uc011bhn.1_Missense_Mutation_p.P813L	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	834					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CTGATGCTCAGGAAAAAAATA	0.408													24	69					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108723676	108723676	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108723676C>T	uc003dxl.2	-	20	2160	c.2073G>A	c.(2071-2073)CTG>CTA	p.L691L	MORC1_uc011bhn.1_Silent_p.L670L	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	691					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						GGGCATTCTTCAGGCACCCTT	0.338													106	311					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108754254	108754254	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108754254C>T	uc003dxl.2	-	15	1479	c.1392G>A	c.(1390-1392)GAG>GAA	p.E464E	MORC1_uc011bhn.1_Silent_p.E464E	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	464					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTAAAGGTTTCTCCACATCGA	0.299													8	54					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108776277	108776277	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108776277C>T	uc003dxl.2	-	13	1175	c.1088G>A	c.(1087-1089)CGA>CAA	p.R363Q	MORC1_uc011bhn.1_Missense_Mutation_p.R363Q	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	363					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						AGCTTGGCTTCGGTTTTCTAC	0.338													22	102					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108782046	108782046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108782046C>T	uc003dxl.2	-	10	935	c.848G>A	c.(847-849)GGA>GAA	p.G283E	MORC1_uc011bhn.1_Missense_Mutation_p.G283E	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	283					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTTAAATGCTCCTTTAAAAGA	0.269													15	101					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108813853	108813853	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108813853C>T	uc003dxl.2	-	7	573	c.486G>A	c.(484-486)CAG>CAA	p.Q162Q	MORC1_uc011bhn.1_Silent_p.Q162Q	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	162					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTGCAAATTTCTGGGGATCAT	0.323													17	54					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108818274	108818274	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108818274C>T	uc003dxl.2	-	6	441	c.354G>A	c.(352-354)ACG>ACA	p.T118T	MORC1_uc011bhn.1_Silent_p.T118T	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	118					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CTTCCTTCTTCGTAAAAAGAA	0.343													22	38					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108819293	108819293	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:108819293G>A	uc003dxl.2	-	5	372	c.285C>T	c.(283-285)TTC>TTT	p.F95F	MORC1_uc011bhn.1_Silent_p.F95F	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	95					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ATTGCCCTATGAACTTCAAGG	0.363													54	134					0	0	1	0	0
DPPA4	55211	broad.mit.edu	37	3	109049587	109049587	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:109049587C>T	uc003dxq.3	-	5	518	c.463G>A	c.(463-465)GAA>AAA	p.E155K	DPPA4_uc011bho.1_Intron|DPPA4_uc011bhp.1_Missense_Mutation_p.E155K	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	155						nucleus	protein binding			upper_aerodigestive_tract(1)	1						AGGGACGTTTCCCCCTTTTCC	0.458													31	97					0	0	1	0	0
CD96	10225	broad.mit.edu	37	3	111304210	111304210	+	Silent	SNP	G	A	A	rs139540088	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111304210G>A	uc003dxw.2	+	6	1010	c.840G>A	c.(838-840)ACG>ACA	p.T280T	CD96_uc003dxv.2_Silent_p.T264T|CD96_uc003dxx.2_Silent_p.T264T|CD96_uc010hpy.1_Silent_p.T264T	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	280	Extracellular (Potential).|Ig-like C2-type.		T -> M (in CLSYN).		cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						ATAACTCCACGGATGTCTTGG	0.408									Opitz_Trigonocephaly_syndrome				20	49					0	0	1	0	0
CD96	10225	broad.mit.edu	37	3	111343190	111343190	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111343190C>T	uc003dxw.2	+	11	1478	c.1308C>T	c.(1306-1308)TCC>TCT	p.S436S	CD96_uc003dxx.2_Silent_p.S420S|CD96_uc010hpy.1_Silent_p.S420S	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	436	Extracellular (Potential).|Pro/Ser/Thr-rich.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						CCAGCAATTCCAGTATGACTA	0.393									Opitz_Trigonocephaly_syndrome				25	87					0	0	1	0	0
PLCXD2	257068	broad.mit.edu	37	3	111394212	111394212	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111394212C>T	uc003dya.2	+	1	706	c.120C>T	c.(118-120)CCC>CCT	p.P40P	PLCXD2_uc003dyb.2_Silent_p.P40P|PLCXD2_uc003dxz.2_Silent_p.P40P	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	40					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						CCTCGCTCCCCCCTCACCTCC	0.542													35	105					0	0	1	0	0
PLCXD2	257068	broad.mit.edu	37	3	111426819	111426819	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111426819G>A	uc003dya.2	+	2	796	c.210G>A	c.(208-210)GTG>GTA	p.V70V	PLCXD2_uc003dyb.2_Silent_p.V70V|PLCXD2_uc003dxz.2_Silent_p.V70V	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	70	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						AGTCCCCAGTGGGGCCTGACC	0.493													9	23					0	0	1	0	0
PLCXD2	257068	broad.mit.edu	37	3	111427208	111427208	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111427208G>A	uc003dya.2	+	2	1185	c.599G>A	c.(598-600)CGA>CAA	p.R200Q	PLCXD2_uc003dyb.2_Missense_Mutation_p.R200Q|PLCXD2_uc003dxz.2_Missense_Mutation_p.R200Q	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	200	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						TTGACGCTGCGAACTCTGTGG	0.512													19	52					0	0	1	0	0
PLCXD2	257068	broad.mit.edu	37	3	111432842	111432842	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111432842C>T	uc003dya.2	+	3	1319	c.733C>T	c.(733-735)CTC>TTC	p.L245F	PLCXD2_uc003dyb.2_Missense_Mutation_p.L245F|PLCXD2_uc003dxz.2_Missense_Mutation_p.L245F	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	245					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						CAAACTAATCCTCTTCTTGGA	0.567													32	72					0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111603012	111603012	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111603012G>A	uc010hqa.2	+	2	499	c.88G>A	c.(88-90)GAT>AAT	p.D30N	PHLDB2_uc003dyc.2_Missense_Mutation_p.D57N|PHLDB2_uc003dyd.2_Missense_Mutation_p.D30N|PHLDB2_uc003dyg.2_Missense_Mutation_p.D30N|PHLDB2_uc003dyh.2_Missense_Mutation_p.D30N|PHLDB2_uc003dye.3_Missense_Mutation_p.D30N|PHLDB2_uc003dyf.3_Missense_Mutation_p.D30N	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	30						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						TGTTGAGAACGATTCCCAAAA	0.418													68	154					0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111603157	111603157	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111603157G>A	uc010hqa.2	+	2	644	c.233G>A	c.(232-234)AGT>AAT	p.S78N	PHLDB2_uc003dyc.2_Missense_Mutation_p.S105N|PHLDB2_uc003dyd.2_Missense_Mutation_p.S78N|PHLDB2_uc003dyg.2_Missense_Mutation_p.S78N|PHLDB2_uc003dyh.2_Missense_Mutation_p.S78N|PHLDB2_uc003dye.3_Missense_Mutation_p.S78N|PHLDB2_uc003dyf.3_Missense_Mutation_p.S78N	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	78						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						TTGGGAACCAGTGTCAGAAGC	0.453													24	258					0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111667826	111667826	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111667826G>A	uc010hqa.2	+	10	2946	c.2535G>A	c.(2533-2535)ACG>ACA	p.T845T	PHLDB2_uc003dyc.2_Silent_p.T829T|PHLDB2_uc003dyd.2_Silent_p.T802T|PHLDB2_uc003dyg.2_Silent_p.T845T|PHLDB2_uc003dyh.2_Silent_p.T802T|PHLDB2_uc003dyi.2_Intron	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	845						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GCAATTCCACGAATCTATCCC	0.478													29	59					0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111671488	111671488	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111671488C>T	uc010hqa.2	+	11	3112	c.2701C>T	c.(2701-2703)CGA>TGA	p.R901*	PHLDB2_uc003dyc.2_Nonsense_Mutation_p.R885*|PHLDB2_uc003dyd.2_Nonsense_Mutation_p.R858*|PHLDB2_uc003dyg.2_Nonsense_Mutation_p.R901*|PHLDB2_uc003dyh.2_Nonsense_Mutation_p.R858*|PHLDB2_uc003dyi.2_Intron	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	901						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						TACTTTGCCTCGAAAGAAAAC	0.443													31	82					0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111693359	111693359	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111693359G>A	uc010hqa.2	+	18	4122	c.3711G>A	c.(3709-3711)TGG>TGA	p.W1237*	PHLDB2_uc003dyc.2_Nonsense_Mutation_p.W1221*|PHLDB2_uc003dyd.2_Nonsense_Mutation_p.W1194*|PHLDB2_uc003dyg.2_Nonsense_Mutation_p.W1237*|PHLDB2_uc003dyh.2_Nonsense_Mutation_p.W1194*|PHLDB2_uc003dyi.2_Nonsense_Mutation_p.W728*|PHLDB2_uc003dyj.2_Nonsense_Mutation_p.W292*	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	1237	PH.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						TGCGGATCTGGATGGATGTTA	0.453													14	151					0	0	1	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111766711	111766711	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111766711C>T	uc010hqb.2	+	5	648	c.478C>T	c.(478-480)CGT>TGT	p.R160C	TMPRSS7_uc011bhr.1_Missense_Mutation_p.R15C	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	286	Extracellular (Potential).|CUB 1.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						CTACCTGATTCGTCTCTCAAT	0.527													27	43					0	0	1	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111769563	111769563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111769563G>A	uc010hqb.2	+	7	928	c.758G>A	c.(757-759)GGG>GAG	p.G253E	TMPRSS7_uc011bhr.1_Missense_Mutation_p.G108E	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	379	Extracellular (Potential).|CUB 2.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						GGCTTTGAAGGGAAAATTTCA	0.403													79	213					0	0	1	0	0
SLC9A10	285335	broad.mit.edu	37	3	111870807	111870807	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111870807C>T	uc003dyu.2	-	28	3643	c.3421G>A	c.(3421-3423)GGA>AGA	p.G1141R	SLC9A10_uc011bhu.1_Missense_Mutation_p.G404R|SLC9A10_uc010hqc.2_Missense_Mutation_p.G1093R	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	1141					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						CTGTGTGCTCCATCCTGGGAT	0.368													26	40					0	0	1	0	0
SLC9A10	285335	broad.mit.edu	37	3	111962889	111962889	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111962889G>A	uc003dyu.2	-	11	1454	c.1232C>T	c.(1231-1233)ACC>ATC	p.T411I	SLC9A10_uc011bhu.1_Intron|SLC9A10_uc010hqc.2_Missense_Mutation_p.T363I	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	411	Helical; (Potential).				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						GACAACAAGGGTTATTAGGCA	0.308													18	65					0	0	1	0	0
SLC9A10	285335	broad.mit.edu	37	3	111981908	111981908	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111981908G>A	uc003dyu.2	-	10	1282	c.1060C>T	c.(1060-1062)CGA>TGA	p.R354*	SLC9A10_uc011bhu.1_Intron|SLC9A10_uc010hqc.2_Nonsense_Mutation_p.R306*	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	354					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						TGACCAACTCGAGACAAAACA	0.373													38	94					0	0	1	0	0
SLC9A10	285335	broad.mit.edu	37	3	111997701	111997701	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:111997701G>A	uc003dyu.2	-	4	415	c.193C>T	c.(193-195)CAA>TAA	p.Q65*	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Nonsense_Mutation_p.Q65*	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	65					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						GCGTATCTTTGGACCTAATAT	0.323													37	100					0	0	1	0	0
ATG3	64422	broad.mit.edu	37	3	112251591	112251591	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112251591G>A	uc003dzd.2	-	12	1010	c.900C>T	c.(898-900)GTC>GTT	p.V300V	ATG3_uc003dzc.2_3'UTR	NM_022488	NP_071933	Q9NT62	ATG3_HUMAN	Apg3p	300					autophagic vacuole assembly|mitochondrial fragmentation involved in apoptosis|protein targeting to membrane|protein ubiquitination	cytoplasmic ubiquitin ligase complex|cytosol	Atg12 ligase activity|Atg8 ligase activity|enzyme binding			ovary(3)	3						TTGTTGGAATGACAGCTTGTA	0.284													32	56					0	0	1	0	0
CCDC80	151887	broad.mit.edu	37	3	112358111	112358111	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112358111C>T	uc003dzf.2	-	2	860	c.642G>A	c.(640-642)CTG>CTA	p.L214L	CCDC80_uc011bhv.1_Silent_p.L214L|CCDC80_uc003dzg.2_Silent_p.L214L|CCDC80_uc003dzh.1_Silent_p.L214L	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	214										ovary(2)	2						GGCTAGGGTCCAGGGGCTGCT	0.582													19	136					0	0	1	0	0
CCDC80	151887	broad.mit.edu	37	3	112358338	112358338	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112358338G>A	uc003dzf.2	-	2	633	c.415C>T	c.(415-417)CCC>TCC	p.P139S	CCDC80_uc011bhv.1_Missense_Mutation_p.P139S|CCDC80_uc003dzg.2_Missense_Mutation_p.P139S|CCDC80_uc003dzh.1_Missense_Mutation_p.P139S	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	139										ovary(2)	2						AGGATGTTGGGAGAGCTGGAC	0.572													8	127					0	0	1	0	0
CD200R1L	344807	broad.mit.edu	37	3	112545989	112545989	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112545989C>T	uc003dzi.1	-	4	756	c.530G>A	c.(529-531)GGA>GAA	p.G177E	CD200R1L_uc011bhw.1_Missense_Mutation_p.G156E|CD200R1L_uc010hqf.1_Missense_Mutation_p.G156E	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	177	Extracellular (Potential).|Ig-like C2-type.					integral to membrane	receptor activity			ovary(1)	1						AAGAATAGATCCCTCTGGGAT	0.507													13	35					0	0	1	0	0
CD200R1	131450	broad.mit.edu	37	3	112648052	112648052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112648052G>A	uc003dzk.1	-	3	669	c.436C>T	c.(436-438)CAC>TAC	p.H146Y	CD200R1_uc003dzj.1_Missense_Mutation_p.H169Y|CD200R1_uc011bhx.1_Missense_Mutation_p.H124Y|CD200R1_uc003dzl.1_Missense_Mutation_p.H169Y|CD200R1_uc003dzm.1_Missense_Mutation_p.H146Y	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	146	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						ACTTGGAGGTGATATCCACGA	0.418													20	107					0	0	1	0	0
CD200R1	131450	broad.mit.edu	37	3	112648064	112648064	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112648064G>A	uc003dzk.1	-	3	657	c.424C>T	c.(424-426)CAT>TAT	p.H142Y	CD200R1_uc003dzj.1_Missense_Mutation_p.H165Y|CD200R1_uc011bhx.1_Missense_Mutation_p.H120Y|CD200R1_uc003dzl.1_Missense_Mutation_p.H165Y|CD200R1_uc003dzm.1_Missense_Mutation_p.H142Y	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	142	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						TATCCACGATGGAAATTCCCA	0.438													31	98					0	0	1	0	0
CD200R1	131450	broad.mit.edu	37	3	112648300	112648300	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112648300G>A	uc003dzk.1	-	3	421	c.188C>T	c.(187-189)CCT>CTT	p.P63L	CD200R1_uc003dzj.1_Missense_Mutation_p.P86L|CD200R1_uc011bhx.1_Missense_Mutation_p.P41L|CD200R1_uc003dzl.1_Missense_Mutation_p.P86L|CD200R1_uc003dzm.1_Missense_Mutation_p.P63L	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	63	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						TAATGCGATAGGAGGGCAACA	0.383													23	105					0	0	1	0	0
CD200R1	131450	broad.mit.edu	37	3	112693694	112693694	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112693694G>A	uc003dzk.1	-	1	244	c.11C>T	c.(10-12)CCT>CTT	p.P4L	CD200R1_uc003dzj.1_Missense_Mutation_p.P4L|CD200R1_uc011bhx.1_Missense_Mutation_p.P4L|CD200R1_uc003dzl.1_Missense_Mutation_p.P4L|CD200R1_uc003dzm.1_Missense_Mutation_p.P4L	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	4					interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						AGTTCTCCAAGGGCAGAGCAT	0.463													9	48					0	0	1	0	0
BOC	91653	broad.mit.edu	37	3	112989677	112989677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112989677C>T	uc003dzx.2	+	6	1174	c.553C>T	c.(553-555)CTC>TTC	p.L185F	BOC_uc010hqi.2_Missense_Mutation_p.L185F|BOC_uc003dzy.2_Missense_Mutation_p.L185F|BOC_uc003dzz.2_Missense_Mutation_p.L185F|BOC_uc003eab.2_5'UTR	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	185	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			CTCAGGGAACCTCCAGATTGT	0.562													27	85					0	0	1	0	0
BOC	91653	broad.mit.edu	37	3	112998264	112998264	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:112998264C>T	uc003dzx.2	+	12	2603	c.1982C>T	c.(1981-1983)CCA>CTA	p.P661L	BOC_uc003dzy.2_Missense_Mutation_p.P661L|BOC_uc003dzz.2_Missense_Mutation_p.P662L|BOC_uc003eab.2_Missense_Mutation_p.P362L|BOC_uc003eac.2_5'Flank	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	661	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			GCCATCCCCCCATCGCGGCTG	0.627													12	55					0	0	1	0	0
WDR52	55779	broad.mit.edu	37	3	113084920	113084920	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113084920C>T	uc003eae.1	-	19	2727	c.2681G>A	c.(2680-2682)AGG>AAG	p.R894K	WDR52_uc003ead.1_Missense_Mutation_p.R75K	NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	894	WD 9.									central_nervous_system(1)	1						CATGTCTTTCCTTAGCATAAA	0.303													44	129					0	0	1	0	0
WDR52	55779	broad.mit.edu	37	3	113138932	113138932	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113138932G>A	uc003eae.1	-	5	548	c.502C>T	c.(502-504)CTG>TTG	p.L168L		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	168										central_nervous_system(1)	1						TTCAAATTCAGAAAGATCAGT	0.428													10	41					0	0	1	0	0
CCDC52	152185	broad.mit.edu	37	3	113218404	113218404	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113218404G>A	uc003eag.3	-	4	464	c.173C>T	c.(172-174)TCG>TTG	p.S58L	CCDC52_uc003eaf.3_RNA|CCDC52_uc011bie.1_Missense_Mutation_p.S70L|CCDC52_uc003eai.1_Missense_Mutation_p.S58L	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	58					cell division|mitosis	centriole|spindle	protein binding				0						TCTATTCTTCGATTTGTGTAT	0.368													15	29					0	0	1	0	0
SIDT1	54847	broad.mit.edu	37	3	113286461	113286461	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113286461C>T	uc003eak.2	+	3	1070	c.419C>T	c.(418-420)CCC>CTC	p.P140L	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.P140L|SIDT1_uc011big.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	140	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						GAGACGGGACCCTTGCAGCAA	0.493													50	153					0	0	1	0	0
SIDT1	54847	broad.mit.edu	37	3	113304061	113304061	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113304061C>T	uc003eak.2	+	9	1596	c.945C>T	c.(943-945)TTC>TTT	p.F315F	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Silent_p.F315F|SIDT1_uc011big.1_Silent_p.F68F	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	315	Helical; (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						TCAGTGTCTTCATCTTCCTGT	0.413													63	202					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375047	113375047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113375047G>A	uc003eam.2	-	7	5893	c.5482C>T	c.(5482-5484)CTC>TTC	p.L1828F	KIAA2018_uc003eal.2_Missense_Mutation_p.L1772F	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1828					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TGATCACTGAGGTGAGGGGCA	0.473													47	167					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375885	113375885	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113375885G>A	uc003eam.2	-	7	5055	c.4644C>T	c.(4642-4644)TCC>TCT	p.S1548S	KIAA2018_uc003eal.2_Silent_p.S1492S	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1548	Gln-rich.				regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TCTTGGATCGGGATTGGTCAG	0.502													15	70					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113376321	113376321	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113376321G>A	uc003eam.2	-	7	4619	c.4208C>T	c.(4207-4209)CCA>CTA	p.P1403L	KIAA2018_uc003eal.2_Missense_Mutation_p.P1347L	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1403					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GTTACTAGGTGGAAATAATCG	0.463													16	58					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113377563	113377563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113377563G>A	uc003eam.2	-	7	3377	c.2966C>T	c.(2965-2967)TCA>TTA	p.S989L	KIAA2018_uc003eal.2_Missense_Mutation_p.S933L	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	989					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TGTATCTGATGAATCTTGCTC	0.393													41	145					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113377997	113377997	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113377997G>A	uc003eam.2	-	7	2943	c.2532C>T	c.(2530-2532)TTC>TTT	p.F844F	KIAA2018_uc003eal.2_Silent_p.F788F	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	844					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						ACACAGCAGGGAAGCTTTCTA	0.473													18	50					0	0	1	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113588364	113588364	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113588364C>T	uc003eaq.3	+	3	261	c.185C>T	c.(184-186)TCC>TTC	p.S62F	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc011bim.1_RNA	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	62						integral to membrane				ovary(2)|skin(1)	3						ATTTCAAGTTCCACCTATAAA	0.303													34	88					0	0	1	0	0
ZDHHC23	254887	broad.mit.edu	37	3	113672617	113672617	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113672617C>T	uc003eau.2	+	3	531	c.232C>T	c.(232-234)CGA>TGA	p.R78*	ZDHHC23_uc003eav.2_Nonsense_Mutation_p.R72*	NM_173570	NP_775841	Q8IYP9	ZDH23_HUMAN	zinc finger, DHHC domain containing 23	78						integral to membrane	acyltransferase activity|zinc ion binding			ovary(2)	2						TGATCGCCTCCGAATTCCTTG	0.453													47	113					0	0	1	0	0
ZNF80	7634	broad.mit.edu	37	3	113955468	113955468	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:113955468G>A	uc010hqo.2	-	1	958	c.454C>T	c.(454-456)CGT>TGT	p.R152C	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	152	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				TGGGTCACACGATGCTGGATG	0.488													25	84					0	0	1	0	0
ZBTB20	26137	broad.mit.edu	37	3	114057955	114057955	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:114057955G>A	uc003ebi.2	-	5	2303	c.2123C>T	c.(2122-2124)GCC>GTC	p.A708V	ZBTB20_uc003ebj.2_Missense_Mutation_p.A635V|ZBTB20_uc010hqp.2_Missense_Mutation_p.A635V|ZBTB20_uc003ebk.2_Missense_Mutation_p.A635V|ZBTB20_uc003ebl.2_Missense_Mutation_p.A635V|ZBTB20_uc003ebm.2_Missense_Mutation_p.A635V|ZBTB20_uc003ebn.2_Missense_Mutation_p.A635V	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	708					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		CTCCGTGCAGGCCACCACGCC	0.647													28	55					0	0	1	0	0
ZBTB20	26137	broad.mit.edu	37	3	114058095	114058095	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:114058095G>A	uc003ebi.2	-	5	2163	c.1983C>T	c.(1981-1983)TCC>TCT	p.S661S	ZBTB20_uc003ebj.2_Silent_p.S588S|ZBTB20_uc010hqp.2_Silent_p.S588S|ZBTB20_uc003ebk.2_Silent_p.S588S|ZBTB20_uc003ebl.2_Silent_p.S588S|ZBTB20_uc003ebm.2_Silent_p.S588S|ZBTB20_uc003ebn.2_Silent_p.S588S	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	661					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		AGCACTCGTAGGACTTCTCTC	0.577													19	201					0	0	1	0	0
ZBTB20	26137	broad.mit.edu	37	3	114070414	114070414	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:114070414G>A	uc003ebi.2	-	4	691	c.511C>T	c.(511-513)CTG>TTG	p.L171L	ZBTB20_uc003ebj.2_Silent_p.L98L|ZBTB20_uc010hqp.2_Silent_p.L98L|ZBTB20_uc003ebk.2_Silent_p.L98L|ZBTB20_uc003ebl.2_Silent_p.L98L|ZBTB20_uc003ebm.2_Silent_p.L98L|ZBTB20_uc003ebn.2_Silent_p.L98L|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	171					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		AGGATCTGCAGAGCTTCCGAC	0.582													29	42					0	0	1	0	0
GAP43	2596	broad.mit.edu	37	3	115394878	115394878	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:115394878G>A	uc003ebq.2	+	2	435	c.49G>A	c.(49-51)GAC>AAC	p.D17N	GAP43_uc003ebr.2_Missense_Mutation_p.D53N	NM_002045	NP_002036	P17677	NEUM_HUMAN	growth associated protein 43 isoform 2	17					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell differentiation|nervous system development|regulation of filopodium assembly|regulation of growth|response to wounding	cell junction|filopodium membrane|growth cone membrane|synapse	calmodulin binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.164)		AAATGATGACGACCAAAAGAT	0.353													37	68					0	0	1	0	0
GAP43	2596	broad.mit.edu	37	3	115395442	115395442	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:115395442G>A	uc003ebq.2	+	2	999	c.613G>A	c.(613-615)GCT>ACT	p.A205T	GAP43_uc003ebr.2_Missense_Mutation_p.A241T	NM_002045	NP_002036	P17677	NEUM_HUMAN	growth associated protein 43 isoform 2	205					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell differentiation|nervous system development|regulation of filopodium assembly|regulation of growth|response to wounding	cell junction|filopodium membrane|growth cone membrane|synapse	calmodulin binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.164)		GAGCAGCCAAGCTGAAGAGAA	0.428													9	25					0	0	1	0	0
GAP43	2596	broad.mit.edu	37	3	115439652	115439652	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:115439652G>A	uc003ebq.2	+	3	1026	c.640G>A	c.(640-642)GAA>AAA	p.E214K	GAP43_uc003ebr.2_Missense_Mutation_p.E250K	NM_002045	NP_002036	P17677	NEUM_HUMAN	growth associated protein 43 isoform 2	214					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell differentiation|nervous system development|regulation of filopodium assembly|regulation of growth|response to wounding	cell junction|filopodium membrane|growth cone membrane|synapse	calmodulin binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.164)		AGCTGTAGATGAAACCAAACC	0.433													112	270					0	0	1	0	0
GAP43	2596	broad.mit.edu	37	3	115439700	115439700	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:115439700G>A	uc003ebq.2	+	3	1074	c.688G>A	c.(688-690)GAA>AAA	p.E230K	GAP43_uc003ebr.2_Missense_Mutation_p.E266K	NM_002045	NP_002036	P17677	NEUM_HUMAN	growth associated protein 43 isoform 2	230					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell differentiation|nervous system development|regulation of filopodium assembly|regulation of growth|response to wounding	cell junction|filopodium membrane|growth cone membrane|synapse	calmodulin binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.164)		TAAAGAAGAGGAACCTGAGGC	0.507													19	314					0	0	1	0	0
LSAMP	4045	broad.mit.edu	37	3	115805287	115805287	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:115805287G>A	uc003ebt.2	-	2	772	c.272C>T	c.(271-273)TCT>TTT	p.S91F	LSAMP_uc011bis.1_Missense_Mutation_p.S91F	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	91	Ig-like C2-type 1.				cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		GTATTCCAGAGAATGGCGTTT	0.507													17	72					0	0	1	0	0
IGSF11	152404	broad.mit.edu	37	3	118621455	118621455	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:118621455G>A	uc003ebw.2	-	7	1455	c.1208C>T	c.(1207-1209)TCC>TTC	p.S403F	IGSF11_uc011biv.1_Missense_Mutation_p.S375F|IGSF11_uc003ebx.2_Missense_Mutation_p.S379F|IGSF11_uc003eby.2_Missense_Mutation_p.S402F|IGSF11_uc003ebz.2_Missense_Mutation_p.S378F|IGSF11_uc010hqs.2_Missense_Mutation_p.S402F	NM_001015887	NP_001015887	Q5DX21	IGS11_HUMAN	immunoglobulin superfamily, member 11 isoform b	403	Cytoplasmic (Potential).				cell adhesion|regulation of growth	integral to membrane|plasma membrane	receptor activity				0						GATGGTGTAGGAATGAGTGTG	0.547													37	89					0	0	1	0	0
IGSF11	152404	broad.mit.edu	37	3	118824028	118824028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:118824028C>T	uc003eby.2	-	3	393	c.12G>A	c.(10-12)GTG>GTA	p.V4V	IGSF11_uc003ebz.2_Silent_p.V4V|IGSF11_uc010hqs.2_Silent_p.V4V	NM_152538	NP_689751	Q5DX21	IGS11_HUMAN	immunoglobulin superfamily, member 11 isoform a	Error:Variant_position_missing_in_Q5DX21_after_alignment					cell adhesion|regulation of growth	integral to membrane|plasma membrane	receptor activity				0						GCAAAAGTTCCACCAGAGACA	0.348													14	78					0	0	1	0	0
C3orf30	152405	broad.mit.edu	37	3	118865039	118865039	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:118865039G>A	uc003ecb.1	+	1	43	c.3G>A	c.(1-3)ATG>ATA	p.M1I	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.M1I	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	1										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		GGCAGGAAATGGAAGAGCCTC	0.617													5	24					0	0	1	0	0
C3orf30	152405	broad.mit.edu	37	3	118865121	118865121	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:118865121G>A	uc003ecb.1	+	1	125	c.85G>A	c.(85-87)GGC>AGC	p.G29S	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.G29S	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	29										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		CCACACTAAGGGCCAGGAAGA	0.567													15	36					0	0	1	0	0
C3orf30	152405	broad.mit.edu	37	3	118866123	118866123	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:118866123T>C	uc003ecb.1	+	1	1127	c.1087T>C	c.(1087-1089)TAT>CAT	p.Y363H	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.Y363H	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	363										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		GCTGTCTTACTATGAAACACG	0.448													16	46					0	0	1	0	0
C3orf30	152405	broad.mit.edu	37	3	118867030	118867030	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:118867030G>A	uc003ecb.1	+	2	1442	c.1402G>A	c.(1402-1404)GAA>AAA	p.E468K	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.E468K	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	468										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		ATTTCAGGATGAATTTTCAGA	0.363													45	123					0	0	1	0	0
UPK1B	7348	broad.mit.edu	37	3	118909895	118909895	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:118909895G>A	uc003ecc.2	+	5	501	c.412G>A	c.(412-414)GAT>AAT	p.D138N	UPK1B_uc011bix.1_Missense_Mutation_p.D58N|UPK1B_uc003ecd.2_Missense_Mutation_p.D130N	NM_006952	NP_008883	O75841	UPK1B_HUMAN	uroplakin 1B	138	Extracellular (Potential).				epithelial cell differentiation	integral to membrane	structural molecule activity				0				GBM - Glioblastoma multiforme(114;0.222)		TCCAAACAATGATGACCAGTG	0.478													122	255					0	0	1	0	0
UPK1B	7348	broad.mit.edu	37	3	118909934	118909934	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:118909934G>A	uc003ecc.2	+	5	540	c.451G>A	c.(451-453)GAC>AAC	p.D151N	UPK1B_uc011bix.1_Missense_Mutation_p.D71N|UPK1B_uc003ecd.2_Missense_Mutation_p.D143N	NM_006952	NP_008883	O75841	UPK1B_HUMAN	uroplakin 1B	151	Extracellular (Potential).				epithelial cell differentiation	integral to membrane	structural molecule activity				0				GBM - Glioblastoma multiforme(114;0.222)		CAAAACCTGGGACAGGCTCAT	0.493													79	177					0	0	1	0	0
CD80	941	broad.mit.edu	37	3	119263605	119263605	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119263605C>T	uc003ecq.2	-	3	605	c.210G>A	c.(208-210)AAG>AAA	p.K70K	CD80_uc010hqt.1_Silent_p.K70K|CD80_uc010hqu.1_Silent_p.K70K|CD80_uc003ecr.1_Silent_p.K70K	NM_005191	NP_005182	P33681	CD80_HUMAN	CD80 antigen precursor	70	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms|intracellular signal transduction|positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of signal transduction|positive regulation of T-helper 1 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation	intracellular	coreceptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2					Abatacept(DB01281)	GCACCATTTTCTTCTCCTTTT	0.458													24	86					0	0	1	0	0
ADPRH	141	broad.mit.edu	37	3	119305142	119305142	+	Silent	SNP	G	A	A	rs142760415	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119305142G>A	uc003ecs.2	+	4	607	c.309G>A	c.(307-309)TCG>TCA	p.S103S	ADPRH_uc010hqv.2_Silent_p.S103S|ADPRH_uc011bjb.1_5'UTR|ADPRH_uc003ect.2_Silent_p.S103S	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	103					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		GTGGTGCCTCGGTGCACAACG	0.567													21	249					0	0	1	0	0
ADPRH	141	broad.mit.edu	37	3	119305206	119305206	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119305206C>T	uc003ecs.2	+	4	671	c.373C>T	c.(373-375)CAT>TAT	p.H125Y	ADPRH_uc010hqv.2_Missense_Mutation_p.H125Y|ADPRH_uc011bjb.1_Missense_Mutation_p.H18Y|ADPRH_uc003ect.2_Missense_Mutation_p.H125Y	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	125					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		CTTCAACAGCCATGAGGGCGG	0.607													64	139					0	0	1	0	0
C3orf15	89876	broad.mit.edu	37	3	119434453	119434453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119434453C>T	uc003ede.3	+	6	622	c.545C>T	c.(544-546)TCC>TTC	p.S182F	C3orf15_uc003edc.2_Missense_Mutation_p.S182F|C3orf15_uc010hqy.1_Missense_Mutation_p.S182F|C3orf15_uc010hqz.2_Missense_Mutation_p.S120F|C3orf15_uc011bjd.1_Missense_Mutation_p.S56F|C3orf15_uc011bje.1_Missense_Mutation_p.S162F|C3orf15_uc010hra.1_5'UTR	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	182						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		AAGCACCTATCCATCCCTTCA	0.388													83	227					0	0	1	0	0
C3orf15	89876	broad.mit.edu	37	3	119451284	119451284	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119451284G>A	uc003ede.3	+	9	1239	c.1162G>A	c.(1162-1164)GAC>AAC	p.D388N	C3orf15_uc010hqy.1_Missense_Mutation_p.D388N|C3orf15_uc010hqz.2_Missense_Mutation_p.D326N|C3orf15_uc011bjd.1_Missense_Mutation_p.D262N|C3orf15_uc011bje.1_Missense_Mutation_p.D368N|C3orf15_uc010hra.1_Missense_Mutation_p.D149N	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	Error:Variant_position_missing_in_Q7Z4T9_after_alignment						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		CAACTCAGAGGACTTTGTAGT	0.358													15	42					0	0	1	0	0
C3orf15	89876	broad.mit.edu	37	3	119463029	119463029	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119463029G>A	uc003ede.3	+	14	1965	c.1888G>A	c.(1888-1890)GAG>AAG	p.E630K	C3orf15_uc010hqz.2_Missense_Mutation_p.E568K|C3orf15_uc011bjd.1_Missense_Mutation_p.E504K|C3orf15_uc011bje.1_Missense_Mutation_p.E610K	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	466						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GGAGGAGGACGAGATATTTAA	0.562													17	38					0	0	1	0	0
NR1I2	8856	broad.mit.edu	37	3	119535955	119535955	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119535955C>T	uc003edj.2	+	9	3040	c.1201C>T	c.(1201-1203)CGC>TGC	p.R401C	NR1I2_uc003edi.2_Missense_Mutation_p.R364C|NR1I2_uc003edk.2_Missense_Mutation_p.R440C|NR1I2_uc003edl.2_Missense_Mutation_p.R289C	NM_003889	NP_003880	O75469	NR1I2_HUMAN	nuclear receptor subfamily 1, group I, member 2	401	Ligand-binding.				drug export|exogenous drug catabolic process|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid metabolic process|xenobiotic metabolic process|xenobiotic transport	nucleoplasm	drug binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(114;0.175)	Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Rifampin(DB01045)|Vitamin E(DB00163)	CACCGAGCTCCGCAGCATCAA	0.582													37	64					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119886646	119886646	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119886646G>A	uc011bjf.1	-	9	1678	c.1678C>T	c.(1678-1680)CCT>TCT	p.P560S	GPR156_uc011bjg.1_Missense_Mutation_p.P556S	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	560	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		GAAGCCTCAGGGCCCAGGCCC	0.587													57	117					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119892174	119892174	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119892174C>T	uc011bjf.1	-	8	1077	c.1077G>A	c.(1075-1077)GAG>GAA	p.E359E	GPR156_uc011bjg.1_Silent_p.E355E	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	359	Cytoplasmic (Potential).|Potential.					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		TGAGGAGCCTCTCCATGGAGC	0.527													21	54					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119911838	119911838	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:119911838T>A	uc011bjf.1	-	4	422	c.422A>T	c.(421-423)AAG>ATG	p.K141M	GPR156_uc011bjg.1_Missense_Mutation_p.K141M	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	141	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		TCGCCAGCTCTTTCCCAGAAT	0.512													20	84					0	0	1	0	0
LRRC58	116064	broad.mit.edu	37	3	120053973	120053973	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120053973G>A	uc003edr.2	-	3	739	c.643C>T	c.(643-645)CGT>TGT	p.R215C		NM_001099678	NP_001093148	Q96CX6	LRC58_HUMAN	leucine rich repeat containing 58	215	LRR 8.										0				GBM - Glioblastoma multiforme(114;0.147)		CTTAGGGAACGAAGTGAATGT	0.343													15	51					0	0	1	0	0
MIR198	406975	broad.mit.edu	37	3	120114550	120114550	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120114550G>A	hsa-mir-198|MI0000240	-			c.27G>A			FSTL1_uc003eds.2_3'UTR|FSTL1_uc011bjh.1_3'UTR																	0						AAAATCACAGGAACCTATCTC	0.343													11	49					0	0	1	0	0
FSTL1	11167	broad.mit.edu	37	3	120122201	120122201	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120122201C>T	uc003eds.2	-	8	757	c.582G>A	c.(580-582)AGG>AGA	p.R194R	FSTL1_uc011bjh.1_Silent_p.R159R	NM_007085	NP_009016	Q12841	FSTL1_HUMAN	follistatin-like 1 precursor	194	EF-hand 2.				BMP signaling pathway	extracellular space	calcium ion binding|heparin binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.189)		CACAGAGTCCCCTGAAACAAA	0.468													5	67					0	0	1	0	0
NDUFB4	4710	broad.mit.edu	37	3	120319969	120319969	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120319969C>T	uc003edu.2	+	2	271	c.192C>T	c.(190-192)GCC>GCT	p.A64A	NDUFB4_uc003edt.2_Silent_p.A64A	NM_004547	NP_004538	O95168	NDUB4_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	64					mitochondrial electron transport, NADH to ubiquinone|response to oxidative stress|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0				GBM - Glioblastoma multiforme(114;0.14)	NADH(DB00157)	AAAATCCTGCCTTGCTTCGTT	0.393													44	141					0	0	1	0	0
HGD	3081	broad.mit.edu	37	3	120363267	120363267	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120363267G>A	uc003edw.2	-	10	1043	c.673C>T	c.(673-675)CGT>TGT	p.R225C	HGD_uc003edv.2_Missense_Mutation_p.R84C	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	225			R -> H (in AKU).		L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		AAGAAATCACGAGGATTGGCC	0.443													25	66					0	0	1	0	0
HGD	3081	broad.mit.edu	37	3	120371457	120371457	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120371457C>T	uc003edw.2	-	5	694	c.324G>A	c.(322-324)AAG>AAA	p.K108K	HGD_uc003edv.2_5'Flank	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	108					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		AGTCTACTTTCTTCTGAGATG	0.428													11	46					0	0	1	0	0
HGD	3081	broad.mit.edu	37	3	120389297	120389297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120389297C>T	uc003edw.2	-	4	629	c.259G>A	c.(259-261)GAA>AAA	p.E87K		NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	87					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		GGATCAACTTCATCCCAGTTG	0.423													33	111					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120764309	120764309	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120764309G>A	uc003eec.3	+	5	537	c.397G>A	c.(397-399)GAT>AAT	p.D133N	STXBP5L_uc011bji.1_Missense_Mutation_p.D133N	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	133	WD 2.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AAGTTCAGATGATACACTTCA	0.348													17	169					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120871407	120871407	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120871407G>A	uc003eec.3	+	8	893	c.753G>A	c.(751-753)GAG>GAA	p.E251E	STXBP5L_uc011bji.1_Silent_p.E251E	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	251					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		ATTATGATGAGGTAAGTGATT	0.353													27	54					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120876350	120876350	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:120876350G>A	uc003eec.3	+	9	894	c.754_splice	c.e9-1	p.A252_splice	STXBP5L_uc011bji.1_Splice_Site_p.A252_splice	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like						exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TATTTTATTAGGCTATTCATT	0.328													15	49					0	0	1	0	0
ARGFX	503582	broad.mit.edu	37	3	121304974	121304974	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121304974C>T	uc003eef.2	+	5	570	c.475C>T	c.(475-477)CCC>TCC	p.P159S		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	159						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		GCCCACCTCCCCCAGAACATC	0.493													52	85					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121340447	121340447	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121340447C>T	uc003eeg.2	+	3	381	c.171C>T	c.(169-171)CTC>CTT	p.L57L		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	57	TRAF-type.				muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		ACCAGCTCCTCTGCCCTTTAG	0.587													30	76					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121340705	121340705	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121340705G>A	uc003eeg.2	+	3	639	c.429G>A	c.(427-429)ATG>ATA	p.M143I		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	143					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		CCTTGAAAATGGTGGAACTTT	0.507													11	34					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121340778	121340778	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121340778G>A	uc003eeg.2	+	3	712	c.502G>A	c.(502-504)GAA>AAA	p.E168K		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	168					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		CAGTGTGGAGGAAATGGGAGG	0.488													15	38					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121340788	121340788	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121340788G>A	uc003eeg.2	+	3	722	c.512G>A	c.(511-513)GGA>GAA	p.G171E		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	171					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		GAAATGGGAGGAGCAGTGGGT	0.493													16	32					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121341592	121341592	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121341592C>T	uc003eeg.2	+	3	1526	c.1316C>T	c.(1315-1317)TCC>TTC	p.S439F		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	439					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		GAACAGTTTTCCTCTGGGACA	0.522													29	97					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121341852	121341852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121341852C>T	uc003eeg.2	+	3	1786	c.1576C>T	c.(1576-1578)CGT>TGT	p.R526C		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	526					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AAACCATTTCCGTCCCCCAGG	0.502													13	47					0	0	1	0	0
HCLS1	3059	broad.mit.edu	37	3	121350818	121350818	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121350818C>T	uc003eeh.3	-	14	1461	c.1336G>A	c.(1336-1338)GAG>AAG	p.E446K	HCLS1_uc011bjj.1_Missense_Mutation_p.E409K	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	446	SH3.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		AAGGAAAGCTCATCACTTCCC	0.517													48	132					0	0	1	0	0
HCLS1	3059	broad.mit.edu	37	3	121353122	121353122	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121353122G>A	uc003eeh.3	-	10	960	c.835C>T	c.(835-837)CCA>TCA	p.P279S	HCLS1_uc011bjj.1_Missense_Mutation_p.P242S|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	279					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		ACTGGCTGTGGAGCCTCAGGG	0.597													22	64					0	0	1	0	0
HCLS1	3059	broad.mit.edu	37	3	121356074	121356074	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121356074C>T	uc003eeh.3	-	7	609	c.484G>A	c.(484-486)GGG>AGG	p.G162R	HCLS1_uc011bjj.1_Intron|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	162	Cortactin 3.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		TTCTCCACCCCGTACCGGCCA	0.557													32	100					0	0	1	0	0
GOLGB1	2804	broad.mit.edu	37	3	121410779	121410779	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121410779G>A	uc003eei.3	-	14	7543	c.7417C>T	c.(7417-7419)CGA>TGA	p.R2473*	GOLGB1_uc010hrc.2_Nonsense_Mutation_p.R2478*|GOLGB1_uc003eej.3_Nonsense_Mutation_p.R2439*	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2473	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		ATGCGGTCTCGATCATTTTGG	0.413													23	204					0	0	1	0	0
EAF2	55840	broad.mit.edu	37	3	121591511	121591511	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121591511C>T	uc003een.2	+	5	711	c.612C>T	c.(610-612)TCC>TCT	p.S204S	EAF2_uc003eeo.2_Silent_p.S74S	NM_018456	NP_060926	Q96CJ1	EAF2_HUMAN	ELL associated factor 2	204	Ser-rich.|Necessary for transactivation activity.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	protein binding				0				GBM - Glioblastoma multiforme(114;0.0972)		ATTGCAAATCCTCTACTTCTG	0.393													21	125					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121630439	121630439	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121630439C>T	uc003eep.2	+	4	507	c.354C>T	c.(352-354)TCC>TCT	p.S118S	SLC15A2_uc011bjn.1_Intron	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	118	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding	p.S118F(1)		skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TCTATCTCTCCTTGGTGTATG	0.418													15	43					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121643197	121643197	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121643197G>A	uc003eep.2	+	12	1156	c.1003_splice	c.e12-1	p.G335_splice	SLC15A2_uc011bjn.1_Splice_Site_p.G304_splice	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a						protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	AAATGTTTCAGGGGTTTTTTG	0.363													56	158					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121647268	121647268	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121647268G>A	uc003eep.2	+	15	1360	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	SLC15A2_uc011bjn.1_Missense_Mutation_p.E372K	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	403					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TTGCTCTAAGGAAATGGCCCC	0.463													49	163					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121659731	121659731	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121659731C>T	uc003eep.2	+	22	2220	c.2067C>T	c.(2065-2067)TTC>TTT	p.F689F	SLC15A2_uc011bjn.1_Silent_p.F658F	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	689	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	GCCTGATCTTCTCCATCATGG	0.458													34	77					0	0	1	0	0
ILDR1	286676	broad.mit.edu	37	3	121712534	121712534	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121712534G>A	uc003ees.2	-	7	1168	c.1062C>T	c.(1060-1062)CTC>CTT	p.L354L	ILDR1_uc003eeq.2_Silent_p.L322L|ILDR1_uc003eer.2_Silent_p.L310L|ILDR1_uc010hrg.2_Silent_p.L265L	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	354	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GAATTGGGGTGAGCCACTGCT	0.602													15	35					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121973125	121973125	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121973125G>A	uc003eev.3	+	2	461	c.89G>A	c.(88-90)GGG>GAG	p.G30E	CASR_uc003eew.3_Missense_Mutation_p.G30E	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	30	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CAAAAGAAGGGGGACATTATC	0.517													44	135					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121976229	121976229	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121976229C>T	uc003eev.3	+	3	859	c.487C>T	c.(487-489)CCC>TCC	p.P163S	CASR_uc003eew.3_Missense_Mutation_p.P163S	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	163	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTTCTACATTCCCCAGGTACT	0.567													17	69					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121980436	121980436	+	Missense_Mutation	SNP	G	A	A	rs104893689		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121980436G>A	uc003eev.3	+	4	926	c.554G>A	c.(553-555)CGA>CAA	p.R185Q	CASR_uc003eew.3_Missense_Mutation_p.R185Q	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	185	Extracellular (Potential).		R -> Q (in FHH).		anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TCTTTCCTCCGAACCATCCCC	0.463													58	156					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121981017	121981017	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121981017G>A	uc003eev.3	+	4	1507	c.1135G>A	c.(1135-1137)GAA>AAA	p.E379K	CASR_uc003eew.3_Missense_Mutation_p.E379K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	379	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	AGGTCACGAAGAAAGTGGCGA	0.493													27	54					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121981045	121981045	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:121981045C>T	uc003eev.3	+	4	1535	c.1163C>T	c.(1162-1164)TCG>TTG	p.S388L	CASR_uc003eew.3_Missense_Mutation_p.S388L	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	388	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	AGCAACAGCTCGACAGCCTTC	0.488													9	60					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122001064	122001064	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122001064G>A	uc003eev.3	+	6	2085	c.1713G>A	c.(1711-1713)GGG>GGA	p.G571G	CASR_uc003eew.3_Silent_p.G581G	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	571	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GTCCTGATGGGGAGTATAGTG	0.597													31	67					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122001066	122001066	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122001066A>T	uc003eev.3	+	6	2087	c.1715A>T	c.(1714-1716)GAG>GTG	p.E572V	CASR_uc003eew.3_Missense_Mutation_p.E582V	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	572	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCTGATGGGGAGTATAGTGAT	0.597													29	66					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122002628	122002628	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122002628G>A	uc003eev.3	+	7	2199	c.1827G>A	c.(1825-1827)ACG>ACA	p.T609T	CASR_uc003eew.3_Silent_p.T619T	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	609	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGTCGTGGACGGAGCCCTTTG	0.527													14	56					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122003043	122003043	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122003043C>T	uc003eev.3	+	7	2614	c.2242C>T	c.(2242-2244)CCC>TCC	p.P748S	CASR_uc003eew.3_Missense_Mutation_p.P758S	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	748	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CACCGCGCCCCCGTCAAGCTA	0.592													23	49					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122003483	122003483	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122003483C>T	uc003eev.3	+	7	3054	c.2682C>T	c.(2680-2682)GTC>GTT	p.V894V	CASR_uc003eew.3_Silent_p.V904V	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	894	Cytoplasmic (Potential).|Interaction with RNF19A.				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GCAGCAACGTCTCCCGCAAGC	0.652													21	33					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122003723	122003723	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122003723C>T	uc003eev.3	+	7	3294	c.2922C>T	c.(2920-2922)ACC>ACT	p.T974T	CASR_uc003eew.3_Silent_p.T984T	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	974	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GCACGGTCACCTTCTCACTGA	0.577													15	45					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122003771	122003771	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122003771G>A	uc003eev.3	+	7	3342	c.2970G>A	c.(2968-2970)AGG>AGA	p.R990R	CASR_uc003eew.3_Silent_p.R1000R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	990	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGGCCCACAGGAATTCTACGC	0.577													15	43					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122003933	122003933	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122003933G>A	uc003eev.3	+	7	3504	c.3132G>A	c.(3130-3132)GTG>GTA	p.V1044V	CASR_uc003eew.3_Silent_p.V1054V	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	1044	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GGCCAGAGGTGGAGGACCCTG	0.547													27	92					0	0	1	0	0
PARP9	83666	broad.mit.edu	37	3	122247235	122247235	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122247235G>A	uc010hri.2	-	11	2686	c.2541C>T	c.(2539-2541)TTC>TTT	p.F847F	PARP9_uc003eff.3_Silent_p.F812F|PARP9_uc011bjs.1_Silent_p.F812F|PARP9_uc003efg.2_Silent_p.F392F|PARP9_uc003efi.2_Silent_p.F812F|PARP9_uc003efh.2_Silent_p.F847F	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	847	PARP catalytic.				cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		TGCCACTTGCGAATCCCCTCC	0.448													46	106					0	0	1	0	0
DTX3L	151636	broad.mit.edu	37	3	122287651	122287651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122287651C>T	uc003efk.2	+	3	804	c.715C>T	c.(715-717)CCC>TCC	p.P239S	DTX3L_uc010hrj.2_Intron	NM_138287	NP_612144	Q8TDB6	DTX3L_HUMAN	deltex 3-like	239					histone monoubiquitination|response to DNA damage stimulus	cytoplasm|nucleus	histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)	4				GBM - Glioblastoma multiforme(114;0.0459)		TTTTGAAGTTCCCTTGCCTTA	0.398													22	56					0	0	1	0	0
PARP14	54625	broad.mit.edu	37	3	122420051	122420051	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122420051C>T	uc003efq.3	+	6	2709	c.2650C>T	c.(2650-2652)CGC>TGC	p.R884C	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.R601C|PARP14_uc003efs.1_Missense_Mutation_p.R601C	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	884	Macro 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		AGTGGGGCCCCGCTGGAGCGG	0.557													9	23					0	0	1	0	0
PARP14	54625	broad.mit.edu	37	3	122437790	122437790	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122437790C>T	uc003efq.3	+	14	4851	c.4792C>T	c.(4792-4794)CTC>TTC	p.L1598F	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.L1315F|PARP14_uc003efs.1_Missense_Mutation_p.L1315F	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	1598	WWE.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		TGTTCAGCGCCTCACGAAATC	0.388													5	24					0	0	1	0	0
DIRC2	84925	broad.mit.edu	37	3	122525735	122525735	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122525735C>T	uc003efw.3	+	2	514	c.375C>T	c.(373-375)TTC>TTT	p.F125F	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Intron	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	125	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		TGACATCCTTCCTTATGGTTT	0.333													27	60					0	0	1	0	0
DIRC2	84925	broad.mit.edu	37	3	122598136	122598136	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122598136C>T	uc003efw.3	+	9	1487	c.1348C>T	c.(1348-1350)CCC>TCC	p.P450S	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Missense_Mutation_p.P288S|uc003efx.1_RNA	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	450	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		CTGGTGCCTTCCCGGGTCGTG	0.458													136	268					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122631747	122631747	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122631747G>A	uc003efz.1	-	18	2972	c.2668C>T	c.(2668-2670)CTG>TTG	p.L890L	SEMA5B_uc011bju.1_Silent_p.L832L|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.L890L|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	890	Extracellular (Potential).|TSP type-1 3.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		ACGCAGGGCAGGCCCCCGTTG	0.687													42	76					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122632215	122632215	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122632215C>T	uc003efz.1	-	17	2641	c.2337G>A	c.(2335-2337)TGG>TGA	p.W779*	SEMA5B_uc011bju.1_Nonsense_Mutation_p.W721*|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Nonsense_Mutation_p.W779*|SEMA5B_uc010hro.1_Nonsense_Mutation_p.W721*|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	779	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GCCACGGCGTCCAGGGGGTGT	0.716													4	9					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122632266	122632266	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122632266G>A	uc003efz.1	-	17	2590	c.2286C>T	c.(2284-2286)TTC>TTT	p.F762F	SEMA5B_uc011bju.1_Silent_p.F704F|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.F762F|SEMA5B_uc010hro.1_Silent_p.F704F|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	762	Extracellular (Potential).|TSP type-1 2.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		TGCACGTCTTGAACTCCTGCG	0.726													5	10					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122632737	122632737	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122632737G>A	uc003efz.1	-	15	2404	c.2100C>T	c.(2098-2100)GGC>GGT	p.G700G	SEMA5B_uc011bju.1_Silent_p.G642G|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.G700G|SEMA5B_uc010hro.1_Silent_p.G642G|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	700	Extracellular (Potential).|TSP type-1 1.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		CGCAGATGCGGCCCCCGTGGC	0.667													30	72					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122632771	122632771	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122632771C>T	uc003efz.1	-	15	2370	c.2066G>A	c.(2065-2067)CGA>CAA	p.R689Q	SEMA5B_uc011bju.1_Missense_Mutation_p.R631Q|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.R689Q|SEMA5B_uc010hro.1_Missense_Mutation_p.R631Q|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	689	Extracellular (Potential).|TSP type-1 1.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GCTGCAACTTCGCTGGCGGAC	0.682													30	60					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122634644	122634644	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122634644C>T	uc003efz.1	-	13	2086	c.1782G>A	c.(1780-1782)TGG>TGA	p.W594*	SEMA5B_uc011bju.1_Nonsense_Mutation_p.W536*|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Nonsense_Mutation_p.W594*|SEMA5B_uc010hro.1_Nonsense_Mutation_p.W536*	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	594	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		TGTTCTGGGTCCAGAGGCTCA	0.607													15	64					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122667443	122667443	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:122667443G>A	uc003efz.1	-	3	542	c.238C>T	c.(238-240)CAC>TAC	p.H80Y	SEMA5B_uc011bju.1_Missense_Mutation_p.H22Y|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.H80Y|SEMA5B_uc010hro.1_Missense_Mutation_p.H22Y|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	80	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		CTGGAGAGGTGGGACACCAGC	0.627													10	42					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123019002	123019002	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123019002G>A	uc003egh.1	-	15	2865	c.2865C>T	c.(2863-2865)TTC>TTT	p.F955F	ADCY5_uc003egg.1_Silent_p.F588F|ADCY5_uc003egi.1_Silent_p.F514F	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	955	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CGGCGTTGTCGAAGAGCGTGA	0.617													14	52					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123019089	123019089	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123019089C>T	uc003egh.1	-	15	2778	c.2778G>A	c.(2776-2778)CAG>CAA	p.Q926Q	ADCY5_uc003egg.1_Silent_p.Q559Q|ADCY5_uc003egi.1_Silent_p.Q485Q	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	926	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		TGCAGCTGATCTGCAGGAACA	0.637													13	28					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123021952	123021952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123021952C>T	uc003egh.1	-	14	2674	c.2674G>A	c.(2674-2676)GAT>AAT	p.D892N	ADCY5_uc003egg.1_Missense_Mutation_p.D525N|ADCY5_uc003egi.1_Missense_Mutation_p.D451N	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	892	Extracellular (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CCCTGCTCATCGCCCAGGCTG	0.647													19	40					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123022953	123022953	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123022953G>A	uc003egh.1	-	13	2520	c.2520C>T	c.(2518-2520)TTC>TTT	p.F840F	ADCY5_uc003egg.1_Silent_p.F473F|ADCY5_uc003egi.1_Silent_p.F399F	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	840	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GGGTGATGGTGAACACCCCAA	0.488													15	54					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123036904	123036904	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123036904G>A	uc003egh.1	-	11	2317	c.2317C>T	c.(2317-2319)CTC>TTC	p.L773F	ADCY5_uc003egg.1_Missense_Mutation_p.L406F|ADCY5_uc003egi.1_Missense_Mutation_p.L332F	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	773	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CAGATGAAGAGGAAGACGAGC	0.597													7	83					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123038613	123038613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123038613G>A	uc003egh.1	-	10	2164	c.2164C>T	c.(2164-2166)CGT>TGT	p.R722C	ADCY5_uc003egg.1_Missense_Mutation_p.R355C|ADCY5_uc003egi.1_Missense_Mutation_p.R281C	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	722	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		TCAATGGCACGGCCCAGAAAC	0.592													11	36					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123039618	123039618	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123039618C>T	uc003egh.1	-	9	2089	c.2089G>A	c.(2089-2091)GGC>AGC	p.G697S	ADCY5_uc003egg.1_Missense_Mutation_p.G330S|ADCY5_uc003egi.1_Missense_Mutation_p.G256S	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	697	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		TCTTCAAAGCCCTagaagaga	0.383													8	27					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123332988	123332988	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123332988C>T	uc003ego.2	-	34	5991	c.5709G>A	c.(5707-5709)GAG>GAA	p.E1903E	uc003egk.2_Intron|MYLK_uc003egl.2_Silent_p.E143E|MYLK_uc003egm.2_Silent_p.E142E|MYLK_uc010hrr.2_Silent_p.E338E|MYLK_uc011bjv.1_Silent_p.E703E|MYLK_uc011bjw.1_Silent_p.E1902E|MYLK_uc003egp.2_Silent_p.E1834E|MYLK_uc003egq.2_Silent_p.E1852E|MYLK_uc003egr.2_Silent_p.E1783E|MYLK_uc003egs.2_Silent_p.E1727E	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1903					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CTTCACCTTCCTCCATCGTTT	0.458													32	292					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123345767	123345767	+	Silent	SNP	C	T	T	rs141649592	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123345767C>T	uc003ego.2	-	31	5418	c.5136G>A	c.(5134-5136)CAG>CAA	p.Q1712Q	uc003egk.2_Intron|MYLK_uc010hrr.2_Silent_p.Q147Q|MYLK_uc011bjv.1_Silent_p.Q512Q|MYLK_uc011bjw.1_Silent_p.Q1712Q|MYLK_uc003egp.2_Silent_p.Q1643Q|MYLK_uc003egq.2_Silent_p.Q1661Q|MYLK_uc003egr.2_Silent_p.Q1592Q|MYLK_uc003egs.2_Silent_p.Q1536Q	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1712	Calmodulin-binding.|Protein kinase.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GCTGAAGGCACTGCGTGCAGT	0.507													11	63					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123419462	123419462	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123419462G>A	uc003ego.2	-	18	3135	c.2853C>T	c.(2851-2853)GTC>GTT	p.V951V	MYLK_uc011bjw.1_Silent_p.V951V|MYLK_uc003egp.2_Silent_p.V882V|MYLK_uc003egq.2_Silent_p.V951V|MYLK_uc003egr.2_Silent_p.V882V|MYLK_uc003egs.2_Silent_p.V775V|MYLK_uc003egt.2_Silent_p.V142V	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	951	Actin-binding (calcium/calmodulin- sensitive) (By similarity).|5 X 28 AA approximate tandem repeats.|Calmodulin-binding (By similarity).|1-3.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		AGCGAAAATCGACCTGCTGGG	0.597													24	50					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123428651	123428651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123428651G>A	uc003ego.2	-	14	2176	c.1894C>T	c.(1894-1896)CTC>TTC	p.L632F	MYLK_uc011bjw.1_Missense_Mutation_p.L632F|MYLK_uc003egp.2_Missense_Mutation_p.L563F|MYLK_uc003egq.2_Missense_Mutation_p.L632F|MYLK_uc003egr.2_Missense_Mutation_p.L563F|MYLK_uc003egs.2_Missense_Mutation_p.L456F	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	632	Ig-like C2-type 5.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		ATGACTTTGAGATCAGAGAGG	0.512													78	360					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123451818	123451818	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123451818C>T	uc003ego.2	-	11	1723	c.1441G>A	c.(1441-1443)GAC>AAC	p.D481N	MYLK_uc011bjw.1_Missense_Mutation_p.D481N|MYLK_uc003egp.2_Intron|MYLK_uc003egq.2_Missense_Mutation_p.D481N|MYLK_uc003egr.2_Intron|MYLK_uc003egs.2_Missense_Mutation_p.D305N	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	481	Ig-like C2-type 3.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GTCCCACTGTCCCTGGTCCGG	0.577													13	54					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123452725	123452725	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123452725C>T	uc003ego.2	-	10	1400	c.1118G>A	c.(1117-1119)AGG>AAG	p.R373K	MYLK_uc011bjw.1_Missense_Mutation_p.R373K|MYLK_uc003egp.2_Missense_Mutation_p.R373K|MYLK_uc003egq.2_Missense_Mutation_p.R373K|MYLK_uc003egr.2_Missense_Mutation_p.R373K|MYLK_uc003egs.2_Missense_Mutation_p.R197K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	373					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		AGGAGCTGGCCTCTTCCTCTC	0.612													38	103					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123456259	123456259	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123456259C>T	uc003ego.2	-	8	1002	c.720G>A	c.(718-720)GGG>GGA	p.G240G	MYLK_uc011bjw.1_Silent_p.G240G|MYLK_uc003egp.2_Silent_p.G240G|MYLK_uc003egq.2_Silent_p.G240G|MYLK_uc003egr.2_Silent_p.G240G|MYLK_uc003egs.2_Silent_p.G64G|MYLK_uc010hrs.1_Silent_p.G240G	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	240	Ig-like C2-type 2.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCGAGGCCTTCCCCGACCCGT	0.567													55	106					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123457790	123457790	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123457790G>A	uc003ego.2	-	7	824	c.542C>T	c.(541-543)TCC>TTC	p.S181F	MYLK_uc011bjw.1_Missense_Mutation_p.S181F|MYLK_uc003egp.2_Missense_Mutation_p.S181F|MYLK_uc003egq.2_Missense_Mutation_p.S181F|MYLK_uc003egr.2_Missense_Mutation_p.S181F|MYLK_uc003egs.2_Missense_Mutation_p.S5F|MYLK_uc010hrs.1_Missense_Mutation_p.S181F	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	181	Ig-like C2-type 2.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GATCTTGCAGGAGAATCGTCC	0.542													7	27					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	123953720	123953720	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123953720C>T	uc003ehg.2	+	3	314	c.187C>T	c.(187-189)CGC>TGC	p.R63C	KALRN_uc010hrv.1_Missense_Mutation_p.R63C|KALRN_uc003ehf.1_Missense_Mutation_p.R63C|KALRN_uc011bjy.1_Missense_Mutation_p.R63C	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	63	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CTTCCCTGCTCGCAGCAATCA	0.537													7	12					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	123987692	123987692	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:123987692G>A	uc003ehg.2	+	5	680	c.553G>A	c.(553-555)GAA>AAA	p.E185K	KALRN_uc010hrv.1_Missense_Mutation_p.E185K|KALRN_uc003ehf.1_Missense_Mutation_p.E185K|KALRN_uc011bjy.1_Missense_Mutation_p.E185K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	185					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GGAGTGGATCGAACTGCGGCT	0.602													18	48					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124117644	124117644	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124117644G>A	uc003ehg.2	+	13	2393	c.2266G>A	c.(2266-2268)GAG>AAG	p.E756K	KALRN_uc010hrv.1_Missense_Mutation_p.E756K|KALRN_uc003ehf.1_Missense_Mutation_p.E756K|KALRN_uc011bjy.1_Missense_Mutation_p.E756K|KALRN_uc003ehh.1_Missense_Mutation_p.E102K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	756					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GCAGATGGAGGAGCTGTTCCA	0.582													33	86					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124117716	124117716	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124117716G>A	uc003ehg.2	+	13	2465	c.2338G>A	c.(2338-2340)GAG>AAG	p.E780K	KALRN_uc010hrv.1_Missense_Mutation_p.E780K|KALRN_uc003ehf.1_Missense_Mutation_p.E780K|KALRN_uc011bjy.1_Missense_Mutation_p.E780K|KALRN_uc003ehh.1_Missense_Mutation_p.E126K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	780					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GTACACCATCGAGGTAGCAGG	0.592													5	55					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124181467	124181467	+	Missense_Mutation	SNP	G	A	A	rs139954729	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124181467G>A	uc003ehg.2	+	25	4139	c.4012G>A	c.(4012-4014)GAT>AAT	p.D1338N	KALRN_uc010hrv.1_Missense_Mutation_p.D1329N|KALRN_uc003ehf.1_Missense_Mutation_p.D1338N|KALRN_uc011bjy.1_Missense_Mutation_p.D1329N|KALRN_uc003ehh.1_Missense_Mutation_p.D684N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1338	DH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AGAGATCTACGATTTCCATAA	0.483													10	40					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124193559	124193559	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124193559G>A	uc003ehg.2	+	26	4202	c.4075G>A	c.(4075-4077)GGA>AGA	p.G1359R	KALRN_uc010hrv.1_Missense_Mutation_p.G1350R|KALRN_uc003ehf.1_Missense_Mutation_p.G1359R|KALRN_uc011bjy.1_Missense_Mutation_p.G1350R|KALRN_uc003ehh.1_Missense_Mutation_p.G705R	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1359	DH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGAGGATGTGGGACACTGCTT	0.517													18	53					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124201687	124201687	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124201687C>T	uc003ehg.2	+	28	4345	c.4218C>T	c.(4216-4218)TCC>TCT	p.S1406S	KALRN_uc010hrv.1_Silent_p.S1397S|KALRN_uc003ehf.1_Silent_p.S1406S|KALRN_uc011bjy.1_Silent_p.S1397S|KALRN_uc003ehh.1_Silent_p.S752S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1406	DH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGGCCAACTCCATCTCTTCCT	0.512													16	129					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124207135	124207135	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124207135G>A	uc003ehg.2	+	29	4490	c.4363G>A	c.(4363-4365)GAT>AAT	p.D1455N	KALRN_uc010hrv.1_Missense_Mutation_p.D1446N|KALRN_uc003ehf.1_Missense_Mutation_p.D1455N|KALRN_uc011bjy.1_Missense_Mutation_p.D1446N|KALRN_uc003ehh.1_Missense_Mutation_p.D801N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1455	DH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GAAAGCCAATGATGCCATGCA	0.522													27	56					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124210210	124210210	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124210210C>T	uc003ehg.2	+	31	4749	c.4622C>T	c.(4621-4623)CCC>CTC	p.P1541L	KALRN_uc010hrv.1_Missense_Mutation_p.P1532L|KALRN_uc003ehf.1_Missense_Mutation_p.P1541L|KALRN_uc011bjy.1_Missense_Mutation_p.P1532L	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1541	PH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GAGGGCGATCCCTGCAAATTC	0.562													16	46					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124281801	124281801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124281801G>A	uc003ehg.2	+	34	5168	c.5041G>A	c.(5041-5043)GAG>AAG	p.E1681K	KALRN_uc003ehi.2_Missense_Mutation_p.E54K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1681	SH3 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GCGGCCCAGCGAGCGGCCTGG	0.657													12	36					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124351406	124351406	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124351406G>A	uc003ehg.2	+	35	5443	c.5316G>A	c.(5314-5316)ACG>ACA	p.T1772T	KALRN_uc003ehi.2_Silent_p.T145T|KALRN_uc003ehk.2_Silent_p.T75T|KALRN_uc003ehj.2_Silent_p.T75T	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1772					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AGTGGCTGACGAGTCCTGTGC	0.577													18	87					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124351444	124351444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124351444G>A	uc003ehg.2	+	35	5481	c.5354G>A	c.(5353-5355)GGA>GAA	p.G1785E	KALRN_uc003ehi.2_Missense_Mutation_p.G158E|KALRN_uc003ehk.2_Missense_Mutation_p.G88E|KALRN_uc003ehj.2_Missense_Mutation_p.G88E	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1785					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AAGGCAGATGGAAACATCAAA	0.552													47	82					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124369665	124369665	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124369665G>A	uc003ehg.2	+	38	5799	c.5672G>A	c.(5671-5673)GGA>GAA	p.G1891E	KALRN_uc003ehi.2_Missense_Mutation_p.G232E|KALRN_uc003ehk.2_Missense_Mutation_p.G194E|KALRN_uc011bjz.1_5'UTR|KALRN_uc003ehj.2_Missense_Mutation_p.G162E	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1890					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AGTCTAGAAGGAAGCTCATAC	0.498													28	101					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124385898	124385898	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124385898C>T	uc003ehg.2	+	47	6695	c.6568C>T	c.(6568-6570)CCC>TCC	p.P2190S	KALRN_uc003ehi.2_Missense_Mutation_p.P531S|KALRN_uc003ehk.2_Missense_Mutation_p.P493S|KALRN_uc011bjz.1_Missense_Mutation_p.P282S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2189	PH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GGACAATGATCCCTGCAAGTT	0.433													29	74					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124393367	124393367	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124393367G>A	uc003ehg.2	+	49	7226	c.7099G>A	c.(7099-7101)GAC>AAC	p.D2367N	KALRN_uc003ehi.2_Missense_Mutation_p.D707N|KALRN_uc003ehk.2_Missense_Mutation_p.D670N|KALRN_uc011bjz.1_Missense_Mutation_p.D458N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2366	SH3 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GCCTGCCAGCGACCATTCCCC	0.597													9	18					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124397119	124397119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124397119C>T	uc003ehg.2	+	50	7403	c.7276C>T	c.(7276-7278)CGT>TGT	p.R2426C	KALRN_uc003ehk.2_Missense_Mutation_p.R729C	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2425					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CACAGGGCCTCGTAAACCCAA	0.498													27	100					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124437990	124437990	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124437990C>T	uc003ehg.2	+	60	8761	c.8634C>T	c.(8632-8634)TCC>TCT	p.S2878S	KALRN_uc003ehk.2_Silent_p.S1181S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2877	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GTGGGGTCTCCCCCTTCTTGG	0.527													21	35					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124438117	124438117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124438117G>A	uc003ehg.2	+	60	8888	c.8761G>A	c.(8761-8763)GAA>AAA	p.E2921K	KALRN_uc003ehk.2_Missense_Mutation_p.E1224K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2920	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GATCTTACAGGAAGATTTTCG	0.522													12	64					0	0	1	0	0
ITGB5	3693	broad.mit.edu	37	3	124515299	124515299	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124515299G>A	uc003eho.2	-	10	1926	c.1629C>T	c.(1627-1629)ATC>ATT	p.I543I	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	543	Extracellular (Potential).|II.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		AAGGCCCATAGATCTTGCCAA	0.587													18	124					0	0	1	0	0
ITGB5	3693	broad.mit.edu	37	3	124515320	124515320	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124515320G>A	uc003eho.2	-	10	1905	c.1608C>T	c.(1606-1608)TTC>TTT	p.F536F	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	536	Extracellular (Potential).|II.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		ACTCGCTCTCGAAGCAGGAGC	0.602													28	90					0	0	1	0	0
MUC13	56667	broad.mit.edu	37	3	124627180	124627180	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124627180C>T	uc003ehq.1	-	11	1374	c.1350G>A	c.(1348-1350)ACG>ACA	p.T450T		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	450	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane					0						CAATATGCTTCGTTTTGTTAT	0.343													16	34					0	0	1	0	0
HEG1	57493	broad.mit.edu	37	3	124731866	124731866	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124731866G>A	uc003ehs.3	-	6	2625	c.2557C>T	c.(2557-2559)CTT>TTT	p.L853F	HEG1_uc011bke.1_Missense_Mutation_p.L953F	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	853	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GTGGTCATAAGAGGCTGAGAG	0.517													29	156					0	0	1	0	0
HEG1	57493	broad.mit.edu	37	3	124739717	124739717	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124739717G>A	uc003ehs.3	-	4	1239	c.1171C>T	c.(1171-1173)CCA>TCA	p.P391S	HEG1_uc011bke.1_Missense_Mutation_p.P391S	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	391	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						TCATCCCCTGGATTCCCAGTT	0.448													19	52					0	0	1	0	0
SLC12A8	84561	broad.mit.edu	37	3	124810341	124810341	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124810341C>T	uc003ehv.3	-	12	1974	c.1863G>A	c.(1861-1863)ATG>ATA	p.M621I	SLC12A8_uc003ehw.3_Missense_Mutation_p.M650I|SLC12A8_uc003eht.3_Missense_Mutation_p.M422I|SLC12A8_uc003ehu.3_Missense_Mutation_p.M374I|SLC12A8_uc010hry.2_Intron	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	621					potassium ion transport	integral to membrane	symporter activity				0						CAGCAACACCCATGTTAACCA	0.493													12	59					0	0	1	0	0
SLC12A8	84561	broad.mit.edu	37	3	124810354	124810354	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124810354G>A	uc003ehv.3	-	12	1961	c.1850C>T	c.(1849-1851)ACC>ATC	p.T617I	SLC12A8_uc003ehw.3_Missense_Mutation_p.T646I|SLC12A8_uc003eht.3_Missense_Mutation_p.T418I|SLC12A8_uc003ehu.3_Missense_Mutation_p.T370I|SLC12A8_uc010hry.2_Intron	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	617					potassium ion transport	integral to membrane	symporter activity				0						GTTAACCAGGGTATACACCCA	0.488													21	52					0	0	1	0	0
SLC12A8	84561	broad.mit.edu	37	3	124896607	124896607	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124896607G>A	uc003ehv.3	-	5	713	c.602C>T	c.(601-603)TCT>TTT	p.S201F	SLC12A8_uc003ehw.3_Missense_Mutation_p.S230F|SLC12A8_uc010hrz.1_Missense_Mutation_p.S66F	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	201	Helical; (Potential).				potassium ion transport	integral to membrane	symporter activity				0						GTGGGTGAAAGAACCCACCAC	0.522													16	24					0	0	1	0	0
ZNF148	7707	broad.mit.edu	37	3	124952521	124952521	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:124952521G>A	uc003ehx.3	-	9	1535	c.1049C>T	c.(1048-1050)TCT>TTT	p.S350F	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.S350F|ZNF148_uc010hsa.2_Missense_Mutation_p.S350F|ZNF148_uc003eia.3_Missense_Mutation_p.S350F|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	350					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						AGTACTTGAAGAATAAAGAGG	0.388													33	120					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125831637	125831637	+	Silent	SNP	G	A	A	rs139545472		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:125831637G>A	uc003eim.1	-	19	2359	c.2169C>T	c.(2167-2169)TTC>TTT	p.F723F	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Silent_p.F622F|ALDH1L1_uc003ein.1_Silent_p.F258F	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	723	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CTCTCCGCACGAACTCATCAT	0.572													26	98					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125833454	125833454	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:125833454C>T	uc003eim.1	-	18	2218	c.2028G>A	c.(2026-2028)GGG>GGA	p.G676G	ALDH1L1_uc010hse.1_Intron|ALDH1L1_uc011bki.1_Silent_p.G575G|ALDH1L1_uc003ein.1_Silent_p.G211G	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	676	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	GGGGTGACTTCCCGCCCAGTT	0.617													37	73					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125836936	125836936	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:125836936G>A	uc003eim.1	-	17	2084	c.1894C>T	c.(1894-1896)CTG>TTG	p.L632L	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Silent_p.L531L|ALDH1L1_uc003ein.1_5'Flank	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	632	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TGGCCGACCAGGGAGCCTGTG	0.627													4	34					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125844486	125844486	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:125844486C>T	uc003eim.1	-	15	1963	c.1773G>A	c.(1771-1773)GGG>GGA	p.G591G	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Silent_p.G490G	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	591	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CCACTGTGTTCCCGGCAGCCA	0.572													26	74					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125856770	125856770	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:125856770G>A	uc003eim.1	-	10	1300	c.1110C>T	c.(1108-1110)GGC>GGT	p.G370G	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Silent_p.G269G|ALDH1L1_uc003eio.2_Silent_p.G72G|ALDH1L1_uc010hsf.1_Silent_p.G396G	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	370	Acyl carrier.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CTAACTCCAGGCCATCACACA	0.567													20	60					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125872343	125872343	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:125872343G>A	uc003eim.1	-	7	992	c.802C>T	c.(802-804)CGG>TGG	p.R268W	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.R167W|ALDH1L1_uc003eio.2_5'UTR|ALDH1L1_uc010hsf.1_Missense_Mutation_p.R294W|ALDH1L1_uc003eip.1_Missense_Mutation_p.R175W|ALDH1L1_uc011bkj.1_Missense_Mutation_p.R93W	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	268					10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	ACCCCTGGCCGATGGGCTCCT	0.542													31	71					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125874326	125874326	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:125874326G>A	uc003eim.1	-	5	739	c.549C>T	c.(547-549)ATC>ATT	p.I183I	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Intron|ALDH1L1_uc003eio.2_5'UTR|ALDH1L1_uc010hsf.1_Silent_p.I209I|ALDH1L1_uc003eip.1_Silent_p.I90I|ALDH1L1_uc011bkj.1_Silent_p.I8I	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	183	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TGCCCTCAGCGATCAGCCTCA	0.627													17	37					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125876306	125876306	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:125876306C>T	uc003eim.1	-	4	598	c.408G>A	c.(406-408)TGG>TGA	p.W136*	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Intron|ALDH1L1_uc003eio.2_5'Flank|ALDH1L1_uc010hsf.1_Nonsense_Mutation_p.W162*|ALDH1L1_uc003eip.1_Nonsense_Mutation_p.W45*|ALDH1L1_uc011bkj.1_5'UTR	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	136	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CATCATCCGCCCAGAAGATGG	0.572													30	110					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125877456	125877456	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:125877456G>A	uc003eim.1	-	3	344	c.154C>T	c.(154-156)CCG>TCG	p.P52S	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.P52S|ALDH1L1_uc003eio.2_5'Flank|ALDH1L1_uc010hsf.1_Missense_Mutation_p.P78S|ALDH1L1_uc003eip.1_5'UTR|ALDH1L1_uc011bkj.1_Intron	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	52	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TTGAATACCGGCACTCCATCC	0.582													19	107					0	0	1	0	0
CCDC37	348807	broad.mit.edu	37	3	126132960	126132960	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126132960C>T	uc003eiu.1	+	4	262	c.163C>T	c.(163-165)CAC>TAC	p.H55Y	CCDC37_uc010hsg.1_Missense_Mutation_p.H55Y	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	55										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		GAACCCTTTCCACTTATCTGG	0.567													90	300					0	0	1	0	0
CCDC37	348807	broad.mit.edu	37	3	126138986	126138986	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126138986G>A	uc003eiu.1	+	11	1095	c.996G>A	c.(994-996)ACG>ACA	p.T332T	CCDC37_uc010hsg.1_Silent_p.T333T	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	332										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		TTCTGCAGACGATGCGGCTGG	0.647													8	28					0	0	1	0	0
CCDC37	348807	broad.mit.edu	37	3	126153184	126153184	+	Missense_Mutation	SNP	G	A	A	rs141942694	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126153184G>A	uc003eiu.1	+	15	1687	c.1588G>A	c.(1588-1590)GAG>AAG	p.E530K	CCDC37_uc010hsg.1_Missense_Mutation_p.E531K	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	530	Potential.									ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		GGTCAAGATCGAGCAGGCCGA	0.637													14	53					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126208158	126208159	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126208158_126208159CC>TT	uc003eiz.1	-	17	1700_1701	c.1668_1669GG>AA	c.(1666-1671)AGGGAG>AGAAAG	p.E557K	UROC1_uc010hsi.1_Missense_Mutation_p.E617K	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	557					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		TTGGAGGTCTCCCTAAAGGGGC	0.495													38	142					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126219633	126219633	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126219633G>A	uc003eiz.1	-	11	1082	c.1050C>T	c.(1048-1050)TTC>TTT	p.F350F	UROC1_uc010hsi.1_Silent_p.F410F	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	350					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		AGCCGCCATTGAACGGGTTGT	0.617													37	79					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126219690	126219690	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126219690C>T	uc003eiz.1	-	11	1025	c.993G>A	c.(991-993)ACG>ACA	p.T331T	UROC1_uc010hsi.1_Silent_p.T391T	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	331					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		ACTCCCCCGTCGTGTCCAATT	0.647													12	47					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126224649	126224649	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126224649G>A	uc003eiz.1	-	8	740	c.708C>T	c.(706-708)ATC>ATT	p.I236I	UROC1_uc010hsi.1_Silent_p.I236I	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	236					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CCAAGTCCTCGATGCCCAGGT	0.647													15	41					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126226912	126226912	+	Silent	SNP	C	T	T	rs139167502	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126226912C>T	uc003eiz.1	-	5	470	c.438G>A	c.(436-438)TCG>TCA	p.S146S	UROC1_uc010hsi.1_Silent_p.S146S	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	146					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CTGTCATCTTCGACAAGTAGA	0.587													21	134					0	0	1	0	0
CHST13	166012	broad.mit.edu	37	3	126261247	126261247	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126261247C>T	uc003eja.2	+	3	852	c.852C>T	c.(850-852)TCC>TCT	p.S284S		NM_152889	NP_690849	Q8NET6	CHSTD_HUMAN	carbohydrate sulfotransferase 13	284	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.151)		CGGGCGCATCCGACCTGAGCT	0.602													5	7					0	0	1	0	0
CHST13	166012	broad.mit.edu	37	3	126261284	126261284	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126261284G>A	uc003eja.2	+	3	889	c.889G>A	c.(889-891)GCC>ACC	p.A297T		NM_152889	NP_690849	Q8NET6	CHSTD_HUMAN	carbohydrate sulfotransferase 13	297	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.151)		gccccggggagccgccgccTC	0.562													4	8					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	126386152	126386152	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126386152C>T	uc003eje.1	+	4	604	c.360C>T	c.(358-360)ACC>ACT	p.T120T						RecName: Full=Putative uncharacterized protein C3orf46;																		GGTCTGTCACCAAGCGGGACA	0.602													13	28					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	126916055	126916055	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:126916055G>A	uc003eji.1	+	2	767	c.527G>A	c.(526-528)GGA>GAA	p.G176E						RecName: Full=Putative uncharacterized protein C3orf56;																		CCATCCAGAGGAGCTCCCTAC	0.647													24	47					0	0	1	0	0
MCM2	4171	broad.mit.edu	37	3	127323759	127323759	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:127323759G>A	uc003ejp.2	+	4	490	c.433G>A	c.(433-435)GAG>AAG	p.E145K	MCM2_uc011bkm.1_Missense_Mutation_p.E15K|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Missense_Mutation_p.E29K	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	145	Interaction with MYST2 (By similarity).				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						GGAGGACGAGGAGCGCCCTGC	0.647													12	20					0	0	1	0	0
MCM2	4171	broad.mit.edu	37	3	127340602	127340602	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:127340602C>T	uc003ejp.2	+	16	2758	c.2701C>T	c.(2701-2703)CTG>TTG	p.L901L	MCM2_uc011bkm.1_Silent_p.L771L|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Silent_p.L854L	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	901					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						GAAAATGATCCTGCAGCAGTT	0.493													18	49					0	0	1	0	0
PODXL2	50512	broad.mit.edu	37	3	127358154	127358154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:127358154C>T	uc003ejq.2	+	2	161	c.137C>T	c.(136-138)TCC>TTC	p.S46F		NM_015720	NP_056535	Q9NZ53	PDXL2_HUMAN	podocalyxin-like 2 precursor	46	Extracellular (Potential).				leukocyte tethering or rolling	integral to plasma membrane	glycosaminoglycan binding|protein binding			ovary(1)|central_nervous_system(1)	2						ACCTCCACCTCCCTGCTAGAC	0.642													18	54					0	0	1	0	0
PODXL2	50512	broad.mit.edu	37	3	127379289	127379290	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:127379289_127379290CC>TT	uc003ejq.2	+	3	442_443	c.418_419CC>TT	c.(418-420)CCA>TTA	p.P140L		NM_015720	NP_056535	Q9NZ53	PDXL2_HUMAN	podocalyxin-like 2 precursor	140	Extracellular (Potential).				leukocyte tethering or rolling	integral to plasma membrane	glycosaminoglycan binding|protein binding			ovary(1)|central_nervous_system(1)	2						TCAAGAGCTGCCAAACCTCCCC	0.401													13	64					0	0	1	0	0
KBTBD12	166348	broad.mit.edu	37	3	127642053	127642053	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:127642053C>T	uc010hsr.2	+	1	152	c.149C>T	c.(148-150)GCT>GTT	p.A50V	KBTBD12_uc003ejy.3_Intron|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_5'Flank|KBTBD12_uc003ejz.2_Missense_Mutation_p.A50V	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	50	BTB.									ovary(1)	1						CTGGTCCTGGCTGCATTTAGC	0.393													21	47					0	0	1	0	0
KBTBD12	166348	broad.mit.edu	37	3	127646621	127646621	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:127646621G>A	uc010hsr.2	+	2	1088	c.1085G>A	c.(1084-1086)GGA>GAA	p.G362E	KBTBD12_uc003ejy.3_5'UTR|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_Missense_Mutation_p.E4K|KBTBD12_uc003ejz.2_Missense_Mutation_p.G362E	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	362										ovary(1)	1						CATGATAGAGGAAACCAGTTT	0.368													65	179					0	0	1	0	0
SEC61A1	29927	broad.mit.edu	37	3	127783766	127783766	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:127783766C>T	uc003ekb.2	+	8	847	c.663C>T	c.(661-663)GCC>GCT	p.A221A	RUVBL1_uc003eke.2_3'UTR|RUVBL1_uc003ekf.2_3'UTR|SEC61A1_uc003ekc.2_Silent_p.A168A|SEC61A1_uc003ekd.2_Silent_p.A101A|SEC61A1_uc003ekg.2_5'UTR	NM_013336	NP_037468	P61619	S61A1_HUMAN	Sec61 alpha 1 subunit	221	Lumenal (Potential).				protein targeting to ER	integral to endoplasmic reticulum membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|protein binding|ribosome binding			ovary(1)	1						ATCTGCTGGCCACACGCACAG	0.507													23	102					0	0	1	0	0
DNAJB8	165721	broad.mit.edu	37	3	128181420	128181420	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:128181420C>T	uc003ekk.1	-	3	2330	c.669G>A	c.(667-669)AAG>AAA	p.K223K	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	223					protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		TGAGCTGCTCCTTGCCGTTCA	0.642													53	101					0	0	1	0	0
DNAJB8	165721	broad.mit.edu	37	3	128181482	128181482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:128181482C>T	uc003ekk.1	-	3	2268	c.607G>A	c.(607-609)GGG>AGG	p.G203R	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	203					protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		CGCTCCTGCCCGTTCTCCACG	0.612													43	97					0	0	1	0	0
DNAJB8	165721	broad.mit.edu	37	3	128181538	128181538	+	Missense_Mutation	SNP	G	A	A	rs140414363		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:128181538G>A	uc003ekk.1	-	3	2212	c.551C>T	c.(550-552)TCG>TTG	p.S184L	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	184					protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		CTCGGTGGACGACATCACCGA	0.622													37	70					0	0	1	0	0
GATA2	2624	broad.mit.edu	37	3	128200709	128200709	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:128200709C>T	uc003ekm.3	-	6	1531	c.1096G>A	c.(1096-1098)GGG>AGG	p.G366R	GATA2_uc003ekn.3_Missense_Mutation_p.G352R|GATA2_uc003eko.2_Missense_Mutation_p.G366R	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	366	GATA-type 2.				blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		ACAGGGTCCCCGTTGGCGTTT	0.652			Mis		AML(CML blast transformation)								19	49					0	0	1	0	0
GP9	2815	broad.mit.edu	37	3	128780587	128780587	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:128780587C>T	uc003elm.2	+	3	192	c.5C>T	c.(4-6)CCT>CTT	p.P2L		NM_000174	NP_000165	P14770	GPIX_HUMAN	glycoprotein IX (platelet) precursor	2					blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane	protein binding				0					Quinine(DB00468)	TGTCCCATGCCTGCCTGGGGA	0.682													6	16					0	0	1	0	0
GP9	2815	broad.mit.edu	37	3	128780787	128780787	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:128780787G>A	uc003elm.2	+	3	392	c.205G>A	c.(205-207)GGA>AGA	p.G69R		NM_000174	NP_000165	P14770	GPIX_HUMAN	glycoprotein IX (platelet) precursor	69	Extracellular (Potential).|LRR.				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane	protein binding				0					Quinine(DB00468)	CGTGCCCCCGGGAGCCTTTGA	0.682													16	40					0	0	1	0	0
COPG	22820	broad.mit.edu	37	3	128987836	128987836	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:128987836C>T	uc003els.2	+	18	1936	c.1836C>T	c.(1834-1836)ATC>ATT	p.I612I	COPG_uc010htb.2_Silent_p.I518I	NM_016128	NP_057212	Q9Y678	COPG_HUMAN	coatomer protein complex, subunit gamma 1	612	Interaction with ZNF289/ARFGAP2.				COPI coating of Golgi vesicle|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(3)|breast(1)	4						GGCAGGAGATCTTCCAGGGTG	0.458													24	85					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	129123150	129123150	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129123150G>A	uc003emg.2	-	7	1509	c.1346C>T	c.(1345-1347)TCT>TTT	p.S449F		NM_207307	NP_997190			hypothetical protein LOC90288																		CAGATTCGGAGAAAAGACCTT	0.572													34	90					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	129123158	129123158	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129123158C>T	uc003emg.2	-	7	1501	c.1338G>A	c.(1336-1338)AAG>AAA	p.K446K		NM_207307	NP_997190			hypothetical protein LOC90288																		GAGAAAAGACCTTCCAGTCAG	0.572													38	87					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	129127538	129127538	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129127538T>C	uc003emg.2	-	6	1362	c.1199A>G	c.(1198-1200)AAG>AGG	p.K400R		NM_207307	NP_997190			hypothetical protein LOC90288																		CTTACAGAGCTTCCAGCATTG	0.572													5	10					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	129137225	129137225	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129137225G>A	uc003emg.2	-	3	716	c.553C>T	c.(553-555)CCT>TCT	p.P185S		NM_207307	NP_997190			hypothetical protein LOC90288																		GACAGGGCAGGGGGCTCGGGC	0.602													11	30					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129168726	129168726	+	Silent	SNP	C	T	T	rs139138308		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129168726C>T	uc003emm.2	+	2	260	c.54C>T	c.(52-54)ATC>ATT	p.I18I	IFT122_uc003eml.2_Silent_p.I18I|IFT122_uc003emn.2_Silent_p.I18I|IFT122_uc003emo.2_Silent_p.I18I|IFT122_uc003emp.2_5'UTR|IFT122_uc010htc.2_Silent_p.I18I|IFT122_uc011bky.1_5'UTR|IFT122_uc003emq.2_Silent_p.I18I|IFT122_uc011bkx.1_Silent_p.I18I	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	18	WD 1.				camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						TAAATGACATCGCATTTAAGC	0.393													40	112					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129185811	129185811	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129185811C>T	uc003emm.2	+	8	848	c.642C>T	c.(640-642)ATC>ATT	p.I214I	IFT122_uc003eml.2_Silent_p.I265I|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Silent_p.I64I|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc011bkx.1_Intron|IFT122_uc011bkz.1_Intron	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	214					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						TTCAGGAAATCCCTTCCACTC	0.483													28	103					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129198739	129198739	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129198739C>T	uc003emm.2	+	13	1668	c.1462C>T	c.(1462-1464)CTC>TTC	p.L488F	IFT122_uc003eml.2_Missense_Mutation_p.L539F|IFT122_uc003emn.2_Missense_Mutation_p.L429F|IFT122_uc003emo.2_Missense_Mutation_p.L377F|IFT122_uc003emp.2_Missense_Mutation_p.L338F|IFT122_uc010htc.2_Missense_Mutation_p.L480F|IFT122_uc011bky.1_Missense_Mutation_p.L279F|IFT122_uc003emq.2_Missense_Mutation_p.L328F|IFT122_uc003emr.2_Missense_Mutation_p.L279F|IFT122_uc011bla.1_Missense_Mutation_p.L279F|IFT122_uc011bkx.1_Missense_Mutation_p.L328F|IFT122_uc011bkz.1_RNA|IFT122_uc010htd.1_5'Flank	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	488					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						AAGAGAAGGCCTCTTAGTGGG	0.562													27	60					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129207226	129207226	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129207226G>A	uc003emm.2	+	16	2184	c.1978G>A	c.(1978-1980)GAA>AAA	p.E660K	IFT122_uc003eml.2_Missense_Mutation_p.E711K|IFT122_uc003emn.2_Missense_Mutation_p.E601K|IFT122_uc003emo.2_Missense_Mutation_p.E549K|IFT122_uc003emp.2_Missense_Mutation_p.E510K|IFT122_uc010htc.2_Missense_Mutation_p.E652K|IFT122_uc011bky.1_Missense_Mutation_p.E451K|IFT122_uc003emq.2_Missense_Mutation_p.E500K|IFT122_uc003emr.2_Missense_Mutation_p.E451K|IFT122_uc011bla.1_Missense_Mutation_p.E451K|IFT122_uc010hte.2_Missense_Mutation_p.E40K|IFT122_uc003ems.2_Missense_Mutation_p.E59K|IFT122_uc011bkx.1_Missense_Mutation_p.E500K|IFT122_uc011bkz.1_RNA|IFT122_uc010htd.1_Missense_Mutation_p.E139K	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	660					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						TTTAGATTTTGAAACAGCAAA	0.517													14	58					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129237967	129237967	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129237967C>T	uc003emm.2	+	28	3615	c.3409C>T	c.(3409-3411)CTA>TTA	p.L1137L	IFT122_uc003eml.2_Silent_p.L1188L|IFT122_uc003emn.2_Silent_p.L1078L|IFT122_uc003emo.2_Silent_p.L1027L|IFT122_uc003emp.2_Silent_p.L987L|IFT122_uc010htc.2_Silent_p.L1130L|IFT122_uc011bky.1_Silent_p.L928L|IFT122_uc003emq.2_Silent_p.L977L|IFT122_uc003emr.2_Silent_p.L890L|IFT122_uc011bla.1_Silent_p.L911L|IFT122_uc010hte.2_Silent_p.L463L|IFT122_uc003ems.2_Silent_p.L519L	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	1137					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						GATTCTGCGGCTAGTGGAGAC	0.582													38	135					0	0	1	0	0
RHO	6010	broad.mit.edu	37	3	129249780	129249780	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129249780G>A	uc003emt.2	+	2	518	c.423G>A	c.(421-423)AAG>AAA	p.K141K		NM_000539	NP_000530	P08100	OPSD_HUMAN	rhodopsin	141	Cytoplasmic.				protein-chromophore linkage|rhodopsin mediated signaling pathway	Golgi apparatus|integral to plasma membrane|photoreceptor inner segment membrane|photoreceptor outer segment membrane	G-protein coupled receptor activity|metal ion binding|photoreceptor activity|protein binding				0		all_neural(597;0.0227)|Myeloproliferative disorder(1037;0.0255)|Prostate(884;0.183)		GBM - Glioblastoma multiforme(114;2.58e-05)|Lung(219;0.0234)	Halothane(DB01159)	TGGTGTGTAAGCCCATGAGCA	0.637													47	166					0	0	1	0	0
RHO	6010	broad.mit.edu	37	3	129251120	129251120	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129251120C>T	uc003emt.2	+	3	652	c.557C>T	c.(556-558)TCG>TTG	p.S186L		NM_000539	NP_000530	P08100	OPSD_HUMAN	rhodopsin	186	Extracellular.		S -> P (in RP4).		protein-chromophore linkage|rhodopsin mediated signaling pathway	Golgi apparatus|integral to plasma membrane|photoreceptor inner segment membrane|photoreceptor outer segment membrane	G-protein coupled receptor activity|metal ion binding|photoreceptor activity|protein binding				0		all_neural(597;0.0227)|Myeloproliferative disorder(1037;0.0255)|Prostate(884;0.183)		GBM - Glioblastoma multiforme(114;2.58e-05)|Lung(219;0.0234)	Halothane(DB01159)	CTGCAGTGCTCGTGTGGAATC	0.572													23	62					0	0	1	0	0
H1FOO	132243	broad.mit.edu	37	3	129267879	129267879	+	Silent	SNP	G	A	A	rs145471008		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129267879G>A	uc003emu.2	+	3	419	c.414G>A	c.(412-414)AGG>AGA	p.R138R	H1FOO_uc003emv.2_5'UTR	NM_153833	NP_722575	Q8IZA3	H1FOO_HUMAN	H1 histone family, member O, oocyte-specific	138					meiosis|nucleosome assembly	cytoplasm|nucleosome	DNA binding	p.R138R(1)		skin(1)	1						TCCAGCCCAGGAAGATGGCCC	0.647													5	30					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129276019	129276019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129276019G>A	uc003emx.2	-	34	5593	c.5493C>T	c.(5491-5493)TAC>TAT	p.Y1831Y	PLXND1_uc003emw.2_5'UTR|PLXND1_uc011blb.1_Silent_p.Y500Y	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1831	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						CGATCTTCCGGTACTCAGGAA	0.572													29	72					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129276034	129276034	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129276034C>T	uc003emx.2	-	34	5578	c.5478G>A	c.(5476-5478)AAG>AAA	p.K1826K	PLXND1_uc003emw.2_5'UTR|PLXND1_uc011blb.1_Silent_p.K495K	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1826	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						CAGGAATCTCCTTGGCGTAGA	0.557													25	74					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129278591	129278591	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129278591C>T	uc003emx.2	-	32	5269	c.5169G>A	c.(5167-5169)AAG>AAA	p.K1723K	PLXND1_uc003emw.2_5'Flank|PLXND1_uc011blb.1_Silent_p.K391K	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1723	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						TCAGAATGGCCTTGAACAGGT	0.612													28	127					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129279547	129279547	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129279547C>T	uc003emx.2	-	30	5113	c.5013G>A	c.(5011-5013)GAG>GAA	p.E1671E	PLXND1_uc003emw.2_5'Flank|PLXND1_uc011blb.1_Silent_p.E339E	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1671	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						GGAAATACTTCTCTGTGTCCA	0.448													26	65					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129281993	129281993	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129281993G>A	uc003emx.2	-	26	4712	c.4612C>T	c.(4612-4614)CGC>TGC	p.R1538C	PLXND1_uc011blb.1_Missense_Mutation_p.R206C	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1538	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						AGTGTGTAGCGGGCCTTGCCT	0.642													6	34					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129284780	129284780	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129284780G>A	uc003emx.2	-	24	4372	c.4272C>T	c.(4270-4272)ATC>ATT	p.I1424I	PLXND1_uc011blb.1_Silent_p.I92I	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1424	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						GGACAAAGACGATGAGGAAGT	0.557													5	53					0	0	1	0	0
TRH	7200	broad.mit.edu	37	3	129694861	129694861	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:129694861G>A	uc003enc.2	+	2	763	c.202G>A	c.(202-204)GAG>AAG	p.E68K		NM_007117	NP_009048	P20396	TRH_HUMAN	thyrotropin-releasing hormone	68					cell-cell signaling|hormone-mediated signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|thyrotropin-releasing hormone activity			ovary(1)	1						GGACCAGGGTGAGCACTCCGG	0.667													13	24					0	0	1	0	0
COL29A1	256076	broad.mit.edu	37	3	130095457	130095457	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130095457G>A	uc010htj.1	+	3	939	c.445G>A	c.(445-447)GAA>AAA	p.E149K	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	149	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen					0						GTCTGAGGATGAAGTGGAAGA	0.522													10	17					0	0	1	0	0
COL29A1	256076	broad.mit.edu	37	3	130162345	130162345	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130162345G>A	uc010htj.1	+	36	7007	c.6513G>A	c.(6511-6513)CCG>CCA	p.P2171P	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Silent_p.P210P	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2171	Nonhelical region.				axon guidance|cell adhesion	collagen					0						ACCCACCACCGATGCTTGAGG	0.373													22	52					0	0	1	0	0
COL29A1	256076	broad.mit.edu	37	3	130162359	130162359	+	Missense_Mutation	SNP	C	T	T	rs150604117	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130162359C>T	uc010htj.1	+	36	7021	c.6527C>T	c.(6526-6528)GCC>GTC	p.A2176V	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.A215V	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2176	Nonhelical region.				axon guidance|cell adhesion	collagen					0						CTTGAGGATGCCTGTAGACTC	0.368													18	55					0	0	1	0	0
COL29A1	256076	broad.mit.edu	37	3	130187704	130187704	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130187704C>T	uc010htj.1	+	38	7350	c.6856C>T	c.(6856-6858)CAA>TAA	p.Q2286*	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Nonsense_Mutation_p.Q325*	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2286	Nonhelical region.				axon guidance|cell adhesion	collagen					0						TGTCTCTCTTCAAGAATATTA	0.363													10	23					0	0	1	0	0
COL29A1	256076	broad.mit.edu	37	3	130187862	130187862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130187862C>T	uc010htj.1	+	38	7508	c.7014C>T	c.(7012-7014)GTC>GTT	p.V2338V	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Silent_p.V377V	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2338	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						GGGTTGCTGTCCTGAGCTACT	0.428													10	30					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130282158	130282158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130282158C>T	uc010htl.2	+	2	342	c.311C>T	c.(310-312)TCC>TTC	p.S104F		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	104	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATTGGCGGGTCCCTGCAGATA	0.493													9	39					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130282378	130282378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130282378G>A	uc010htl.2	+	2	562	c.531G>A	c.(529-531)ATG>ATA	p.M177I		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	177	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TGAAGGCCATGGCCACGTCTC	0.463													8	68					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130283963	130283963	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130283963G>A	uc010htl.2	+	3	818	c.787G>A	c.(787-789)GAA>AAA	p.E263K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	263	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TGACATAAAGGAAAATTGCAT	0.393													35	128					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130284070	130284070	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130284070C>T	uc010htl.2	+	3	925	c.894C>T	c.(892-894)AAC>AAT	p.N298N		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	298	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATATACAGAACCTTTCTCCCC	0.478													19	84					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130285592	130285592	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130285592C>T	uc010htl.2	+	4	1360	c.1329C>T	c.(1327-1329)GGC>GGT	p.G443G		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	443	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TTATCGATGGCTCAGGGAGCA	0.478													9	43					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130286970	130286970	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130286970G>A	uc010htl.2	+	5	1954	c.1923G>A	c.(1921-1923)ATG>ATA	p.M641I		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	641	Nonhelical region.|VWFA 4.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TCAGCAAAATGAAAACATTTA	0.413													47	79					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130287237	130287237	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130287237G>A	uc010htl.2	+	5	2221	c.2190G>A	c.(2188-2190)ACG>ACA	p.T730T		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	730	Nonhelical region.|VWFA 4.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TCCTCATCACGGATGGTGAAG	0.517													14	83					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130290201	130290201	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130290201G>A	uc010htl.2	+	6	2972	c.2941G>A	c.(2941-2943)GAT>AAT	p.D981N		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	981	VWFA 5.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AATATTTTCAGATGTGACAGC	0.433													13	28					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130292831	130292832	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130292831_130292832CC>TT	uc010htl.2	+	7	3040_3041	c.3009_3010CC>TT	c.(3007-3012)TTCCTT>TTTTTT	p.L1004F		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1004	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATCTTGTTTTCCTTATGGATGG	0.361													11	33					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130292924	130292924	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130292924C>T	uc010htl.2	+	7	3133	c.3102C>T	c.(3100-3102)CTC>CTT	p.L1034L		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1034	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATGTCAGCCTCAACAGAGTGC	0.418													12	33					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130293171	130293171	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130293171G>A	uc010htl.2	+	7	3380	c.3349G>A	c.(3349-3351)GAG>AAG	p.E1117K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1117	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GTCCCAAGACGAGGTGGCCCA	0.577													18	59					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130308020	130308020	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130308020G>A	uc010htl.2	+	11	4243	c.4212G>A	c.(4210-4212)GGG>GGA	p.G1404G	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1404	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GACCACCAGGGAAAAGGGTGA	0.433													9	26					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130312089	130312089	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130312089G>A	uc010htl.2	+	16	4494	c.4463G>A	c.(4462-4464)GGA>GAA	p.G1488E	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1488	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GGAGATGAGGGATCTCAGGTA	0.363													15	54					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130383928	130383928	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130383928G>A	uc010htl.2	+	35	6615	c.6584G>A	c.(6583-6585)CGA>CAA	p.R2195Q	COL6A6_uc003eni.3_Missense_Mutation_p.R294Q	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	2195	Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CAGCCCCCACGACCATTCCGA	0.284													11	24					0	0	1	0	0
ATP2C1	27032	broad.mit.edu	37	3	130682871	130682871	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130682871C>T	uc003enl.2	+	13	1178	c.956C>T	c.(955-957)GCT>GTT	p.A319V	ATP2C1_uc011blg.1_Missense_Mutation_p.A353V|ATP2C1_uc011blh.1_Missense_Mutation_p.A314V|ATP2C1_uc011bli.1_Missense_Mutation_p.A353V|ATP2C1_uc003enk.2_Missense_Mutation_p.A303V|ATP2C1_uc003enm.2_Missense_Mutation_p.A319V|ATP2C1_uc003enn.2_Missense_Mutation_p.A303V|ATP2C1_uc003eno.2_Missense_Mutation_p.A319V|ATP2C1_uc003enp.2_Missense_Mutation_p.A319V|ATP2C1_uc003enq.2_Missense_Mutation_p.A319V|ATP2C1_uc003enr.2_Missense_Mutation_p.A319V|ATP2C1_uc003ens.2_Missense_Mutation_p.A319V|ATP2C1_uc003ent.2_Missense_Mutation_p.A319V|ATP2C1_uc003enu.2_5'UTR	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	319	Cytoplasmic (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	GTGACGCTAGCTCTTGGTGTT	0.403									Hailey-Hailey_disease				70	150					0	0	1	0	0
ATP2C1	27032	broad.mit.edu	37	3	130712923	130712923	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130712923G>A	uc003enl.2	+	22	2260	c.2038G>A	c.(2038-2040)GAT>AAT	p.D680N	ATP2C1_uc011blg.1_Missense_Mutation_p.D714N|ATP2C1_uc011blh.1_Missense_Mutation_p.D675N|ATP2C1_uc011bli.1_Missense_Mutation_p.D714N|ATP2C1_uc003enk.2_Missense_Mutation_p.D664N|ATP2C1_uc003enm.2_Missense_Mutation_p.D680N|ATP2C1_uc003enn.2_Missense_Mutation_p.D664N|ATP2C1_uc003eno.2_Missense_Mutation_p.D680N|ATP2C1_uc003enp.2_Missense_Mutation_p.D680N|ATP2C1_uc003enq.2_Missense_Mutation_p.D680N|ATP2C1_uc003enr.2_Missense_Mutation_p.D680N|ATP2C1_uc003ens.2_Missense_Mutation_p.D680N|ATP2C1_uc003ent.2_Missense_Mutation_p.D680N|ATP2C1_uc003enu.2_Missense_Mutation_p.D358N	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	680	Cytoplasmic (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	CCTAGTGGATGATGATTTTCA	0.458									Hailey-Hailey_disease				43	70					0	0	1	0	0
ASTE1	28990	broad.mit.edu	37	3	130743962	130743962	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:130743962G>A	uc003env.1	-	3	631	c.189C>T	c.(187-189)TTC>TTT	p.F63F	NEK11_uc003enx.2_5'Flank|NEK11_uc003eny.2_5'Flank|NEK11_uc003eoa.2_5'Flank|NEK11_uc003enz.2_5'Flank|NEK11_uc010htn.2_5'Flank|NEK11_uc011blk.1_5'Flank|NEK11_uc011bll.1_5'Flank|NEK11_uc003enw.1_5'Flank|NEK11_uc011blm.1_5'Flank|ASTE1_uc010htm.1_Silent_p.F63F|ASTE1_uc011blj.1_RNA	NM_014065	NP_054784	Q2TB18	ASTE1_HUMAN	asteroid homolog 1	63					DNA repair		nuclease activity				0						GTGATTCAAAGAATTTTTGTA	0.363													12	98					0	0	1	0	0
CPNE4	131034	broad.mit.edu	37	3	131261477	131261477	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:131261477C>T	uc003eok.2	-	15	1898	c.1463G>A	c.(1462-1464)GGG>GAG	p.G488E	CPNE4_uc011blq.1_Missense_Mutation_p.G506E|CPNE4_uc003eol.2_Missense_Mutation_p.G506E|CPNE4_uc003eom.2_Missense_Mutation_p.G488E|CPNE4_uc003eoj.2_Missense_Mutation_p.G39E	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	488	VWFA.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CCTCAGAATCCCATCATCACC	0.537													22	78					0	0	1	0	0
CPNE4	131034	broad.mit.edu	37	3	131283082	131283082	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:131283082C>T	uc003eok.2	-	11	1474	c.1039G>A	c.(1039-1041)GAG>AAG	p.E347K	CPNE4_uc011blq.1_Missense_Mutation_p.E365K|CPNE4_uc003eol.2_Missense_Mutation_p.E365K|CPNE4_uc003eom.2_Missense_Mutation_p.E347K	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	347	VWFA.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TGGCAAATCTCCCCCACAGCT	0.502													37	72					0	0	1	0	0
CPNE4	131034	broad.mit.edu	37	3	131415460	131415460	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:131415460C>T	uc003eok.2	-	5	868	c.433G>A	c.(433-435)GTG>ATG	p.V145M	CPNE4_uc011blq.1_Missense_Mutation_p.V163M|CPNE4_uc003eol.2_Missense_Mutation_p.V163M|CPNE4_uc003eom.2_Missense_Mutation_p.V145M	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	145	C2 2.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCAGCAATCACCTAAAGGAAA	0.403													25	78					0	0	1	0	0
ACPP	55	broad.mit.edu	37	3	132047130	132047130	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:132047130G>A	uc010htp.2	+	2	230	c.140G>A	c.(139-141)CGA>CAA	p.R47Q	ACPP_uc003eon.3_Missense_Mutation_p.R47Q|ACPP_uc003eop.3_Missense_Mutation_p.R47Q	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	47		Substrate.				extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						CATGGAGACCGAAGTCCCATT	0.433													20	52					0	0	1	0	0
ACPP	55	broad.mit.edu	37	3	132061443	132061443	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:132061443C>T	uc010htp.2	+	6	693	c.603C>T	c.(601-603)GAC>GAT	p.D201D	ACPP_uc003eon.3_Silent_p.D168D|ACPP_uc003eop.3_Silent_p.D201D	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	201						extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						ATGGCCAGGACCTTTTTGGAA	0.308													16	112					0	0	1	0	0
ACAD11	84129	broad.mit.edu	37	3	132298345	132298345	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:132298345G>A	uc003eov.3	-	14	2059	c.1679C>T	c.(1678-1680)TCT>TTT	p.S560F	ACAD11_uc011blr.1_Missense_Mutation_p.S171F	NM_032169	NP_115545	Q709F0	ACD11_HUMAN	putative acyl-CoA dehydrogenase	560						peroxisome	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|transferase activity, transferring phosphorus-containing groups			ovary(1)	1						CCTGGAGAGAGAAGTATTTTG	0.373													17	79					0	0	1	0	0
TMEM108	66000	broad.mit.edu	37	3	133099443	133099443	+	Silent	SNP	G	A	A	rs138205990	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133099443G>A	uc003eph.2	+	4	1162	c.888G>A	c.(886-888)GGG>GGA	p.G296G	TMEM108_uc003epi.2_Silent_p.G296G|TMEM108_uc003epj.1_Silent_p.G296G|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Silent_p.G247G	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	296	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						GCCAAGGAGGGACACCAGATG	0.662													17	42					0	0	1	0	0
TMEM108	66000	broad.mit.edu	37	3	133099913	133099913	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133099913G>A	uc003eph.2	+	4	1632	c.1358G>A	c.(1357-1359)GGG>GAG	p.G453E	TMEM108_uc003epi.2_Missense_Mutation_p.G453E|TMEM108_uc003epj.1_Missense_Mutation_p.G453E|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Missense_Mutation_p.G404E	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	453	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						GTGGCCGAGGGGGACAAACCG	0.612													12	91					0	0	1	0	0
TMEM108	66000	broad.mit.edu	37	3	133099974	133099974	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133099974C>T	uc003eph.2	+	4	1693	c.1419C>T	c.(1417-1419)ATC>ATT	p.I473I	TMEM108_uc003epi.2_Silent_p.I473I|TMEM108_uc003epj.1_Silent_p.I473I|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Silent_p.I424I	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	473	Helical; (Potential).					integral to membrane				ovary(2)|skin(2)	4						CCTGGGTGATCCTGGCCATCA	0.602													12	66					0	0	1	0	0
BFSP2	8419	broad.mit.edu	37	3	133119161	133119161	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133119161C>T	uc003epn.1	+	1	372	c.234C>T	c.(232-234)CTC>CTT	p.L78L		NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	78	Head.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						GCCGGGCCCTCGGCATCAGCA	0.647													19	71					0	0	1	0	0
TF	7018	broad.mit.edu	37	3	133475156	133475156	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133475156C>T	uc003epu.1	+	11	2394	c.666C>T	c.(664-666)GCC>GCT	p.A222A	TF_uc011blt.1_Silent_p.A95A|TF_uc003epw.1_Intron|TF_uc003epv.1_Silent_p.A222A	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	222	Transferrin-like 1.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	GGGATGTGGCCTTTGTCAAGC	0.517													3	25					0	0	1	0	0
C3orf36	80111	broad.mit.edu	37	3	133647250	133647250	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133647250G>A	uc003epz.1	-	1	1407	c.398C>T	c.(397-399)TCT>TTT	p.S133F		NM_025041	NP_079317	Q3SXR2	CC036_HUMAN	hypothetical protein LOC80111	133	Poly-Ser.									ovary(1)	1						GAAGGTGGAAGAGGAAGAGAG	0.592													14	45					0	0	1	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133654618	133654618	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133654618C>T	uc003eqa.3	-	13	2088	c.1814G>A	c.(1813-1815)AGG>AAG	p.R605K	SLCO2A1_uc003eqb.3_Missense_Mutation_p.R529K	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	605	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GGGCCCTCACCTGTCTCGGAG	0.597													19	35					0	0	1	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133667776	133667776	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133667776C>T	uc003eqa.3	-	7	1175	c.901G>A	c.(901-903)GAG>AAG	p.E301K	SLCO2A1_uc003eqb.3_Missense_Mutation_p.E225K|SLCO2A1_uc011blv.1_Intron	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	301	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GACTTGGCCTCCTCCAACTTC	0.587													32	78					0	0	1	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133670172	133670172	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133670172G>A	uc003eqa.3	-	6	1015	c.741C>T	c.(739-741)GTC>GTT	p.V247V	SLCO2A1_uc003eqb.3_Silent_p.V171V|SLCO2A1_uc011blv.1_Intron|SLCO2A1_uc010htw.1_Silent_p.V79V	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	247	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GGTCACCCGGGACCAAGTTAA	0.483													29	62					0	0	1	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133698359	133698359	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:133698359C>T	uc003eqa.3	-	2	474	c.200G>A	c.(199-201)AGT>AAT	p.S67N	SLCO2A1_uc003eqb.3_Missense_Mutation_p.S67N|SLCO2A1_uc011blv.1_Missense_Mutation_p.S67N|SLCO2A1_uc010htw.1_5'UTR	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	67	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						CGATGAAGAACTGGAGAGCCC	0.547													41	109					0	0	1	0	0
AMOTL2	51421	broad.mit.edu	37	3	134085246	134085246	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:134085246G>A	uc003eqf.2	-	4	1356	c.1239C>T	c.(1237-1239)CTC>CTT	p.L413L	AMOTL2_uc003eqg.1_Silent_p.L355L|AMOTL2_uc003eqh.1_Silent_p.L355L|AMOTL2_uc003eqe.1_5'UTR	NM_016201	NP_057285	Q9Y2J4	AMOL2_HUMAN	angiomotin like 2	355	Potential.									large_intestine(1)	1						GGGCCTCAGAGAGCCGCTGGA	0.577													8	102					0	0	1	0	0
CEP63	80254	broad.mit.edu	37	3	134256002	134256003	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:134256002_134256003CC>TT	uc003eqo.1	+	7	896_897	c.447_448CC>TT	c.(445-450)TTCCGT>TTTTGT	p.R150C	CEP63_uc003eql.1_Missense_Mutation_p.R150C|CEP63_uc003eqm.2_Missense_Mutation_p.R150C|CEP63_uc003eqn.1_Missense_Mutation_p.R150C	NM_025180	NP_079456	Q96MT8	CEP63_HUMAN	centrosomal protein 63 isoform a	150	Potential.				cell division|DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitosis|signal transduction in response to DNA damage|spindle assembly	centrosome|cytosol|spindle pole	protein binding			ovary(1)	1						CTCAGGAATTCCGTCAGAAATC	0.46													31	68					0	0	1	0	0
KY	339855	broad.mit.edu	37	3	134366313	134366313	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:134366313G>A	uc010hty.2	-	2	225	c.163C>T	c.(163-165)CGA>TGA	p.R55*	KY_uc011blw.1_Nonsense_Mutation_p.R55*|KY_uc011blx.1_Nonsense_Mutation_p.R55*|KY_uc003eqs.1_Nonsense_Mutation_p.R96*	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	55						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						TGCCATCTTCGGACTCCATTT	0.383													12	16					0	0	1	0	0
KY	339855	broad.mit.edu	37	3	134369698	134369698	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:134369698C>T	uc010hty.2	-	1	167	c.105G>A	c.(103-105)GCG>GCA	p.A35A	KY_uc011blw.1_Silent_p.A35A|KY_uc011blx.1_Silent_p.A35A|KY_uc003eqs.1_Intron	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	35						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						AGCTCGGGTTCGCCTGCTGGT	0.672													9	20					0	0	1	0	0
EPHB1	2047	broad.mit.edu	37	3	134670384	134670384	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:134670384C>T	uc003eqt.2	+	3	515	c.295C>T	c.(295-297)CTC>TTC	p.L99F	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Missense_Mutation_p.L99F	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	99	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CTGCAGCAGCCTCCCTAATGT	0.542													19	37					0	0	1	0	0
EPHB1	2047	broad.mit.edu	37	3	134670844	134670844	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:134670844G>A	uc003eqt.2	+	3	975	c.755G>A	c.(754-756)CGA>CAA	p.R252Q	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Intron	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	252	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CCTATTGGGCGATGCACCTGC	0.577													49	128					0	0	1	0	0
EPHB1	2047	broad.mit.edu	37	3	134920412	134920414	+	Nonsense_Mutation	TNP	CGG	TAA	TAA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:134920412_134920414CGG>TAA	uc003eqt.2	+	12	2447_2449	c.2227_2229CGG>TAA	c.(2227-2229)CGG>TAA	p.R743*	EPHB1_uc003equ.2_Nonsense_Mutation_p.R304*	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	743	Cytoplasmic (Potential).|Protein kinase.		R -> Q (in a gastric adenocarcinoma sample; somatic mutation).			integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding	p.R743Q(1)		lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						TTATGTGCATCGGGACCTGGCTG	0.547													40	182					0	0	1	0	0
EPHB1	2047	broad.mit.edu	37	3	134968304	134968304	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:134968304C>T	uc003eqt.2	+	15	3037	c.2817C>T	c.(2815-2817)TCC>TCT	p.S939S	EPHB1_uc003equ.2_Silent_p.S500S	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	939	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GCTTCACCTCCCTCCAGCTGG	0.552													23	78					0	0	1	0	0
EPHB1	2047	broad.mit.edu	37	3	134968307	134968307	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:134968307C>T	uc003eqt.2	+	15	3040	c.2820C>T	c.(2818-2820)CTC>CTT	p.L940L	EPHB1_uc003equ.2_Silent_p.L501L	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	940	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						TCACCTCCCTCCAGCTGGTCA	0.547													11	89					0	0	1	0	0
STAG1	10274	broad.mit.edu	37	3	136062736	136062737	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:136062736_136062737GG>AC	uc003era.1	-	30	3675_3676	c.3383_3384CC>GT	c.(3382-3384)CCC>CGT	p.P1128R	STAG1_uc003erb.1_Missense_Mutation_p.P1128R	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	1128					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						GGTCTCCCATGGGCCGACTGTT	0.465													26	84					0	0	1	0	0
TMEM22	80723	broad.mit.edu	37	3	136573347	136573347	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:136573347G>A	uc003erf.3	+	2	259	c.45G>A	c.(43-45)GTG>GTA	p.V15V	TMEM22_uc003erg.3_Silent_p.V15V|TMEM22_uc010hub.2_Silent_p.V15V	NM_001097600	NP_001091069	Q8TBE7	TMM22_HUMAN	transmembrane protein 22	15						Golgi apparatus|integral to membrane				ovary(1)	1						AAAAACGGGTGAAAATACATC	0.328													73	149					0	0	1	0	0
TMEM22	80723	broad.mit.edu	37	3	136573671	136573671	+	Silent	SNP	G	A	A	rs142918857	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:136573671G>A	uc003erf.3	+	2	583	c.369G>A	c.(367-369)AGG>AGA	p.R123R	TMEM22_uc003erg.3_Silent_p.R123R|TMEM22_uc010hub.2_Silent_p.R123R	NM_001097600	NP_001091069	Q8TBE7	TMM22_HUMAN	transmembrane protein 22	123	DUF6 1.|Helical; (Potential).					Golgi apparatus|integral to membrane				ovary(1)	1						TTATCACTAGGCTTGTTTCTG	0.393													63	184					0	0	1	0	0
IL20RB	53833	broad.mit.edu	37	3	136708326	136708326	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:136708326C>T	uc003eri.1	+	4	699	c.450C>T	c.(448-450)TTC>TTT	p.F150F	IL20RB_uc003erj.1_RNA|IL20RB_uc010hud.1_Silent_p.F8F	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	150	Extracellular (Potential).|Fibronectin type-III 2.					integral to membrane	receptor activity			ovary(1)	1						AAGATGGCTTCCACCTGGTTA	0.582													17	58					0	0	1	0	0
IL20RB	53833	broad.mit.edu	37	3	136728968	136728968	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:136728968C>T	uc003eri.1	+	7	1088	c.839C>T	c.(838-840)TCA>TTA	p.S280L	IL20RB_uc003erj.1_RNA|IL20RB_uc010hud.1_Missense_Mutation_p.S138L|uc003erk.1_5'Flank	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	280	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)	1						ATAACCAATTCACCCCAGAAG	0.378													45	112					0	0	1	0	0
CLDN18	51208	broad.mit.edu	37	3	137717743	137717743	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:137717743C>T	uc003ero.1	+	1	86	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_001002026	NP_001002026	P56856	CLD18_HUMAN	claudin 18 isoform 2	11	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity			upper_aerodigestive_tract(1)|ovary(1)	2						GCTTGGGGTTCGTGGTTTCAC	0.557													28	78					0	0	1	0	0
CLDN18	51208	broad.mit.edu	37	3	137749945	137749945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:137749945G>A	uc003ero.1	+	5	801	c.748G>A	c.(748-750)GAG>AAG	p.E250K	CLDN18_uc003erp.1_Missense_Mutation_p.E250K|CLDN18_uc010hue.1_Missense_Mutation_p.E206K	NM_001002026	NP_001002026	P56856	CLD18_HUMAN	claudin 18 isoform 2	250	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity	p.E250D(1)		upper_aerodigestive_tract(1)|ovary(1)	2						CACAGAGGACGAGGTACAATC	0.517													43	112					0	0	1	0	0
DZIP1L	199221	broad.mit.edu	37	3	137816641	137816641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:137816641G>A	uc003erq.2	-	3	913	c.550C>T	c.(550-552)CAC>TAC	p.H184Y	DZIP1L_uc003err.1_Missense_Mutation_p.H184Y	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	184	C2H2-type.					intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						cgctggatgtggccccggaga	0.403											OREG0015831	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	17					0	0	1	0	0
ESYT3	83850	broad.mit.edu	37	3	138191536	138191536	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:138191536C>T	uc003esk.2	+	18	2298	c.2072C>T	c.(2071-2073)ACT>ATT	p.T691I	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	691						integral to membrane|plasma membrane					0						ATCTTCCTGACTGTCCCAGGT	0.602													38	105					0	0	1	0	0
CEP70	80321	broad.mit.edu	37	3	138219307	138219307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:138219307C>T	uc003esl.2	-	15	1669	c.1471G>A	c.(1471-1473)GAA>AAA	p.E491K	CEP70_uc011bmk.1_Missense_Mutation_p.E471K|CEP70_uc011bml.1_Missense_Mutation_p.E473K|CEP70_uc011bmm.1_Missense_Mutation_p.E339K|CEP70_uc003esm.2_Missense_Mutation_p.E491K	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	491	TPR.				G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						GTATAAACTTCATTCATTCGG	0.383													74	274					0	0	1	0	0
CEP70	80321	broad.mit.edu	37	3	138219681	138219681	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:138219681G>A	uc003esl.2	-	14	1462	c.1264C>T	c.(1264-1266)CCT>TCT	p.P422S	CEP70_uc011bmk.1_Missense_Mutation_p.P402S|CEP70_uc011bml.1_Missense_Mutation_p.P404S|CEP70_uc011bmm.1_Missense_Mutation_p.P270S|CEP70_uc003esm.2_Missense_Mutation_p.P422S	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	422					G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						TTAAGCCAAGGTACCAGTTCT	0.289													18	88					0	0	1	0	0
PRR23A	729627	broad.mit.edu	37	3	138724463	138724463	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:138724463G>A	uc011bms.1	-	1	648	c.648C>T	c.(646-648)TTC>TTT	p.F216F		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	216	Pro-rich.										0						ATTCCGGGTCGAAGAAGGGGC	0.662													5	10					0	0	1	0	0
PRR23A	729627	broad.mit.edu	37	3	138724491	138724491	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:138724491G>A	uc011bms.1	-	1	620	c.620C>T	c.(619-621)TCA>TTA	p.S207L		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	207	Pro-rich.										0						GTGTCCCTCTGAACTGGGGTT	0.652													5	14					0	0	1	0	0
PRR23A	729627	broad.mit.edu	37	3	138724783	138724783	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:138724783C>T	uc011bms.1	-	1	328	c.328G>A	c.(328-330)GAA>AAA	p.E110K		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	110											0						CCTGAGCGTTCGTCGACAGAG	0.617													12	21					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138738756	138738756	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:138738756G>A	uc003esy.1	-	1	1013	c.748C>T	c.(748-750)CTC>TTC	p.L250F		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	250	Pro-rich.									breast(1)	1						CGTTCCGGGAGCGGCGAGCGC	0.677													9	21					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138738921	138738921	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:138738921G>A	uc003esy.1	-	1	848	c.583C>T	c.(583-585)CCA>TCA	p.P195S		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	195	Pro-rich.									breast(1)	1						CAGGGTTCTGGGATGGGGCCC	0.632													16	49					0	0	1	0	0
PRR23C	389152	broad.mit.edu	37	3	138763135	138763135	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:138763135C>T	uc011bmt.1	-	1	600	c.328G>A	c.(328-330)GAA>AAA	p.E110K		NM_001134657	NP_001128129	Q6ZRP0	PR23C_HUMAN	proline rich 23C	110										skin(1)	1						CCTGAGCATTCGTCGACGGAG	0.647													4	7					0	0	1	0	0
RBP1	5947	broad.mit.edu	37	3	139237318	139237318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:139237318C>T	uc003eti.2	-	3	596	c.485G>A	c.(484-486)GGT>GAT	p.G162D		NM_002899	NP_002890	P09455	RET1_HUMAN	retinol binding protein 1, cellular isoform a	100						cytoplasm	retinal binding|retinol binding|transporter activity				0					Vitamin A(DB00162)	CTCCTTCTCACCCTTCTGCAC	0.612													5	79					0	0	1	0	0
NMNAT3	349565	broad.mit.edu	37	3	139297788	139297788	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:139297788C>T	uc003etj.2	-	2	259	c.219G>A	c.(217-219)CAG>CAA	p.Q73Q	NMNAT3_uc003etk.2_Silent_p.Q36Q|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Intron	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	73					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						AGTCGGATGTCTGCAGGGCCA	0.572													21	53					0	0	1	0	0
NMNAT3	349565	broad.mit.edu	37	3	139346559	139346559	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:139346559C>T	uc003etj.2	-	1	48	c.8G>A	c.(7-9)AGC>AAC	p.S3N	NMNAT3_uc003etk.2_Intron|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Missense_Mutation_p.S3N	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	3					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						AGGTATTCGGCTCTTCATCTT	0.522													3	15					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140123538	140123538	+	Silent	SNP	C	T	T	rs142111816	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140123538C>T	uc003etn.2	+	4	757	c.567C>T	c.(565-567)TCC>TCT	p.S189S	CLSTN2_uc003etm.2_Silent_p.S189S	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	189	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						AGGACTGCTCCCCACAGTACA	0.537										HNSCC(16;0.037)			19	89					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140167471	140167471	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140167471G>A	uc003etn.2	+	6	1088	c.898G>A	c.(898-900)GAG>AAG	p.E300K	CLSTN2_uc003etm.2_Missense_Mutation_p.E300K	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	300	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GATCGTCACAGAGCTGCAGAC	0.527										HNSCC(16;0.037)			40	111					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140167494	140167494	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140167494G>A	uc003etn.2	+	6	1111	c.921G>A	c.(919-921)GGG>GGA	p.G307G	CLSTN2_uc003etm.2_Silent_p.G307G	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	307	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						ATTACATTGGGAAGGGTTGTG	0.483										HNSCC(16;0.037)			22	119					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140167504	140167504	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140167504G>A	uc003etn.2	+	6	1121	c.931G>A	c.(931-933)GAC>AAC	p.D311N	CLSTN2_uc003etm.2_Missense_Mutation_p.D311N	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	311	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GAAGGGTTGTGACCGGGAGAC	0.463										HNSCC(16;0.037)			36	93					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140265500	140265500	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140265500G>A	uc003etn.2	+	10	1841	c.1651G>A	c.(1651-1653)GAA>AAA	p.E551K	CLSTN2_uc003etm.2_Missense_Mutation_p.E551K	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	551	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						TAATTCCTTGGAAAGCCTTGG	0.557										HNSCC(16;0.037)			11	21					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140277573	140277573	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140277573G>A	uc003etn.2	+	12	2105	c.1915G>A	c.(1915-1917)GGC>AGC	p.G639S		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	639	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CACCCTCCGGGGCACAGACCA	0.557										HNSCC(16;0.037)			26	70					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140277662	140277662	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140277662C>T	uc003etn.2	+	12	2194	c.2004C>T	c.(2002-2004)TTC>TTT	p.F668F		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	668	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						TGAGCACCTTCGCCAAAACCG	0.532										HNSCC(16;0.037)			20	56					0	0	1	0	0
TRIM42	287015	broad.mit.edu	37	3	140397412	140397412	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140397412C>T	uc003eto.1	+	1	532	c.341C>T	c.(340-342)TCC>TTC	p.S114F		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	114						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						ATCCATACCTCGTAAGTGCCA	0.418													8	18					0	0	1	0	0
TRIM42	287015	broad.mit.edu	37	3	140407020	140407020	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140407020C>T	uc003eto.1	+	3	1687	c.1496C>T	c.(1495-1497)TCC>TTC	p.S499F		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	499						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						AAGGTACGCTCCTCAGGGGAC	0.572													24	50					0	0	1	0	0
TRIM42	287015	broad.mit.edu	37	3	140409953	140409953	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:140409953C>T	uc003eto.1	+	4	2195	c.2004C>T	c.(2002-2004)AAC>AAT	p.N668N		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	668	Fibronectin type-III.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						AGCTGCACAACCTGACCCCCA	0.428													45	109					0	0	1	0	0
ZBTB38	253461	broad.mit.edu	37	3	141163850	141163850	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141163850C>T	uc003etw.2	+	8	3602	c.2620C>T	c.(2620-2622)CCT>TCT	p.P874S	ZBTB38_uc010hun.2_Missense_Mutation_p.P871S|ZBTB38_uc010huo.2_Missense_Mutation_p.P874S|ZBTB38_uc003ety.2_Missense_Mutation_p.P874S|ZBTB38_uc010hup.2_Missense_Mutation_p.P875S	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	874					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GCAGGAGGAGCCTTTGCCACA	0.478													21	55					0	0	1	0	0
ZBTB38	253461	broad.mit.edu	37	3	141163939	141163939	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141163939C>T	uc003etw.2	+	8	3691	c.2709C>T	c.(2707-2709)TTC>TTT	p.F903F	ZBTB38_uc010hun.2_Silent_p.F900F|ZBTB38_uc010huo.2_Silent_p.F903F|ZBTB38_uc003ety.2_Silent_p.F903F|ZBTB38_uc010hup.2_Silent_p.F904F	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	903					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GTGAAGTGTTCGATGACGCAA	0.507													24	53					0	0	1	0	0
RASA2	5922	broad.mit.edu	37	3	141295889	141295889	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141295889C>T	uc003etz.1	+	15	1531	c.1531C>T	c.(1531-1533)CGT>TGT	p.R511C	RASA2_uc010huq.1_Missense_Mutation_p.R511C|RASA2_uc003eua.1_Missense_Mutation_p.R511C|RASA2_uc011bnc.1_Missense_Mutation_p.R103C	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	511	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						TGTATTTCTTCGTTTCTTTGC	0.358													53	136					0	0	1	0	0
GRK7	131890	broad.mit.edu	37	3	141497184	141497184	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141497184C>T	uc011bnd.1	+	1	142	c.58C>T	c.(58-60)CGG>TGG	p.R20W		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	20					visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CCTGCAGGCCCGGAAGCCCTC	0.697													35	72					0	0	1	0	0
GRK7	131890	broad.mit.edu	37	3	141497271	141497271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141497271C>T	uc011bnd.1	+	1	229	c.145C>T	c.(145-147)CGC>TGC	p.R49C		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	49					visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CGCGGAGCTCCGCCAGAAGCT	0.682													5	33					0	0	1	0	0
GRK7	131890	broad.mit.edu	37	3	141497337	141497337	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141497337C>T	uc011bnd.1	+	1	295	c.211C>T	c.(211-213)CGT>TGT	p.R71C		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	71	RGS.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CCGCCTCTTCCGTGACTTCCT	0.662													15	22					0	0	1	0	0
GRK7	131890	broad.mit.edu	37	3	141497486	141497486	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141497486G>A	uc011bnd.1	+	1	444	c.360G>A	c.(358-360)GGG>GGA	p.G120G		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	120	RGS.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CTGCCCCGGGGAACCCGCAAC	0.672													9	33					0	0	1	0	0
GRK7	131890	broad.mit.edu	37	3	141499573	141499573	+	Silent	SNP	C	T	T	rs56022585		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141499573C>T	uc011bnd.1	+	2	1054	c.970C>T	c.(970-972)CTG>TTG	p.L324L		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	324	Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						GAATGTGCTTCTGGATGACCT	0.582													22	30					0	0	1	0	0
GRK7	131890	broad.mit.edu	37	3	141535653	141535653	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141535653C>T	uc011bnd.1	+	4	1507	c.1423C>T	c.(1423-1425)CCT>TCT	p.P475S		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	475	AGC-kinase C-terminal.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						TGTGCCAGACCCTTCAGTGGT	0.428													49	219					0	0	1	0	0
GK5	256356	broad.mit.edu	37	3	141944198	141944199	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141944198_141944199GG>AA	uc003euq.1	-	1	230_231	c.99_100CC>TT	c.(97-102)TGCCAC>TGTTAC	p.H34Y	GK5_uc010hus.1_RNA|GK5_uc010hut.1_RNA	NM_001039547	NP_001034636	Q6ZS86	GLPK5_HUMAN	glycerol kinase 5 (putative)	34					glycerol metabolic process		ATP binding|glycerol kinase activity				0						TCATAGACGTGGCAGCGGATCA	0.703													5	6					0	0	1	0	0
XRN1	54464	broad.mit.edu	37	3	142037485	142037485	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142037485G>A	uc003eus.2	-	39	4634	c.4567C>T	c.(4567-4569)CCT>TCT	p.P1523S	XRN1_uc010huu.2_Missense_Mutation_p.P990S|XRN1_uc003eut.2_Missense_Mutation_p.P1523S|XRN1_uc003euu.2_Missense_Mutation_p.P1524S	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	1523					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						ACAGCTGAAGGATAATTTGCA	0.368													5	11					0	0	1	0	0
ATR	545	broad.mit.edu	37	3	142176561	142176561	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142176561G>A	uc003eux.3	-	45	7662	c.7540C>T	c.(7540-7542)CGC>TGC	p.R2514C	ATR_uc003euy.1_Missense_Mutation_p.R400C	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2514	PI3K/PI4K.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TGAGTCAGGCGAAATGGCACA	0.368								Other_conserved_DNA_damage_response_genes					28	63					0	0	1	0	0
ATR	545	broad.mit.edu	37	3	142180806	142180806	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142180806G>A	uc003eux.3	-	42	7290	c.7168C>T	c.(7168-7170)CTG>TTG	p.L2390L	ATR_uc003euy.1_Silent_p.L276L	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2390	PI3K/PI4K.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						AGTTTGGTCAGAATAGGTCTC	0.303								Other_conserved_DNA_damage_response_genes					71	227					0	0	1	0	0
ATR	545	broad.mit.edu	37	3	142188379	142188379	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142188379C>T	uc003eux.3	-	38	6474	c.6352G>A	c.(6352-6354)GAT>AAT	p.D2118N	ATR_uc003euy.1_Missense_Mutation_p.D4N	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2118	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TTACCCAAATCATTCCTCATT	0.343								Other_conserved_DNA_damage_response_genes					31	83					0	0	1	0	0
PLS1	5357	broad.mit.edu	37	3	142405204	142405204	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142405204C>T	uc010huv.2	+	9	1126	c.967C>T	c.(967-969)CTT>TTT	p.L323F	PLS1_uc003euz.2_Missense_Mutation_p.L323F|PLS1_uc003eva.2_Missense_Mutation_p.L323F	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	323	Actin-binding 1.|CH 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						TGCCATTGACCTTTCAGGAAT	0.269													28	118					0	0	1	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142537228	142537228	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142537228G>A	uc003evd.2	-	9	1393	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	399	NTR.					extracellular region	collagen binding|heparin binding|peptidase activator activity			ovary(2)|skin(1)	3						TCTTGGTCTTGAACATCATGA	0.378													32	84					0	0	1	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142542441	142542441	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142542441C>T	uc003evd.2	-	7	1078	c.882G>A	c.(880-882)GTG>GTA	p.V294V		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	294						extracellular region	collagen binding|heparin binding|peptidase activator activity			ovary(2)|skin(1)	3						GACACAAGGCCACGGTGGGTT	0.358													32	73					0	0	1	0	0
PAQR9	344838	broad.mit.edu	37	3	142681066	142681066	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142681066G>A	uc003evg.2	-	1	1113	c.1113C>T	c.(1111-1113)TCC>TCT	p.S371S	PAQR9_uc003evf.1_RNA	NM_198504	NP_940906	Q6ZVX9	PAQR9_HUMAN	progestin and adipoQ receptor family member IX	371	Extracellular (Potential).					integral to membrane	receptor activity				0						TGCAGAATTCGGAGCTGTTTA	0.527													41	127					0	0	1	0	0
PAQR9	344838	broad.mit.edu	37	3	142681068	142681068	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142681068A>G	uc003evg.2	-	1	1111	c.1111T>C	c.(1111-1113)TCC>CCC	p.S371P	PAQR9_uc003evf.1_RNA	NM_198504	NP_940906	Q6ZVX9	PAQR9_HUMAN	progestin and adipoQ receptor family member IX	371	Extracellular (Potential).					integral to membrane	receptor activity				0						CAGAATTCGGAGCTGTTTAGG	0.537													39	126					0	0	1	0	0
SR140	23350	broad.mit.edu	37	3	142741799	142741799	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142741799C>T	uc003evh.1	+	12	1222	c.1123C>T	c.(1123-1125)CCC>TCC	p.P375S	SR140_uc003evi.1_5'UTR|SR140_uc011bnj.1_Missense_Mutation_p.P375S|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Missense_Mutation_p.P374S|SR140_uc003evl.1_5'Flank	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	375	Pro-rich.				RNA processing	nucleus	nucleotide binding|RNA binding				0						ACATACGCTTCCCCCACCTCC	0.433													4	24					0	0	1	0	0
CHST2	9435	broad.mit.edu	37	3	142840893	142840893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142840893C>T	uc003evm.2	+	2	2124	c.1235C>T	c.(1234-1236)CCC>CTC	p.P412L		NM_004267	NP_004258	Q9Y4C5	CHST2_HUMAN	carbohydrate (N-acetylglucosamine-6-O)	412	Lumenal (Potential).				inflammatory response|multicellular organismal development|N-acetylglucosamine metabolic process|sulfur compound metabolic process	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity			ovary(3)	3						GCCCTGCAGCCCCCTGACTGG	0.617													28	49					0	0	1	0	0
CHST2	9435	broad.mit.edu	37	3	142840921	142840921	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:142840921G>A	uc003evm.2	+	2	2152	c.1263G>A	c.(1261-1263)CTG>CTA	p.L421L		NM_004267	NP_004258	Q9Y4C5	CHST2_HUMAN	carbohydrate (N-acetylglucosamine-6-O)	421	Lumenal (Potential).				inflammatory response|multicellular organismal development|N-acetylglucosamine metabolic process|sulfur compound metabolic process	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity			ovary(3)	3						GCCACTACCTGGTGGTGCGGT	0.587													7	59					0	0	1	0	0
SLC9A9	285195	broad.mit.edu	37	3	143100923	143100923	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:143100923C>T	uc003evn.2	-	13	1685	c.1503G>A	c.(1501-1503)GAG>GAA	p.E501E		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	501					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						AGGAGGGGTCCTCCTTCAGAT	0.443													26	237					0	0	1	0	0
SLC9A9	285195	broad.mit.edu	37	3	143412128	143412128	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:143412128C>T	uc003evn.2	-	5	737	c.555G>A	c.(553-555)GTG>GTA	p.V185V	SLC9A9_uc011bnk.1_Silent_p.V59V	NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	185	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						TCATAGCCTTCACAAAACCAT	0.378													28	81					0	0	1	0	0
SLC9A9	285195	broad.mit.edu	37	3	143513864	143513864	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:143513864G>A	uc003evn.2	-	4	694	c.512C>T	c.(511-513)GCC>GTC	p.A171V	SLC9A9_uc011bnk.1_Missense_Mutation_p.A45V	NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	171	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						GCAGGAGATGGCAGTTCCCAA	0.413													35	77					0	0	1	0	0
PLOD2	5352	broad.mit.edu	37	3	145806495	145806495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:145806495G>A	uc003evs.1	-	9	1389	c.883C>T	c.(883-885)CAT>TAT	p.H295Y	PLOD2_uc003evq.1_5'Flank|PLOD2_uc011bnm.1_Missense_Mutation_p.H240Y|PLOD2_uc003evr.1_Missense_Mutation_p.H295Y	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	295					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	ACGTTTGGATGGACCTTTGTT	0.308													9	52					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147108974	147108974	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:147108974C>T	uc003ewd.1	-	4	1021	c.748G>A	c.(748-750)GAC>AAC	p.D250N	ZIC4_uc003ewc.1_Missense_Mutation_p.D180N|ZIC4_uc011bno.1_Missense_Mutation_p.D300N	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	250	C2H2-type 4.					nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						TTCTTACGGTCGCTGCTGTTG	0.612													8	32					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147113688	147113688	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:147113688C>T	uc003ewd.1	-	3	912	c.639G>A	c.(637-639)AAG>AAA	p.K213K	ZIC4_uc003ewc.1_Silent_p.K143K|ZIC4_uc011bno.1_Silent_p.K263K	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	213	C2H2-type 3.					nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						TAGCAAAGACCTTCCCACACC	0.537													41	100					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147114176	147114176	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:147114176G>A	uc003ewd.1	-	3	424	c.151C>T	c.(151-153)CCC>TCC	p.P51S	ZIC4_uc003ewc.1_5'UTR|ZIC4_uc011bno.1_Missense_Mutation_p.P101S	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	51						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GAGGCCTGGGGAGGCTCCTCG	0.687													14	25					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147120535	147120535	+	Missense_Mutation	SNP	C	T	T	rs148365070	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:147120535C>T	uc003ewd.1	-	2	323	c.50G>A	c.(49-51)CGA>CAA	p.R17Q	ZIC4_uc011bno.1_Missense_Mutation_p.R67Q	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	17						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						AAGAGTGTTTCGGTAAAGCCG	0.323													43	147					0	0	1	0	0
ZIC1	7545	broad.mit.edu	37	3	147131157	147131157	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:147131157C>T	uc003ewe.2	+	3	1882	c.1163C>T	c.(1162-1164)TCG>TTG	p.S388L		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	388	Ser-rich.				behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						GAATCCTCCTCGCAGGGCTCG	0.627													29	88					0	0	1	0	0
CPB1	1360	broad.mit.edu	37	3	148545841	148545841	+	Missense_Mutation	SNP	C	T	T	rs114058679	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:148545841C>T	uc003ewl.2	+	2	147	c.124C>T	c.(124-126)CGC>TGC	p.R42C		NM_001871	NP_001862	P15086	CBPB1_HUMAN	pancreatic carboxypeptidase B1 preproprotein	42					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TAACATAATCCGCGAGTTGGC	0.363													27	84					0	0	1	0	0
CPB1	1360	broad.mit.edu	37	3	148577674	148577674	+	Missense_Mutation	SNP	G	A	A	rs144356818		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:148577674G>A	uc003ewl.2	+	11	1162	c.1139G>A	c.(1138-1140)CGA>CAA	p.R380Q		NM_001871	NP_001862	P15086	CBPB1_HUMAN	pancreatic carboxypeptidase B1 preproprotein	380					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TTTGAACTTCGAGATACAGGC	0.498													28	88					0	0	1	0	0
CPA3	1359	broad.mit.edu	37	3	148601507	148601507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:148601507G>A	uc003ewm.2	+	9	938	c.886G>A	c.(886-888)GAA>AAA	p.E296K		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	296					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			CCACCTGAATGAAATCAAGGT	0.443													34	77					0	0	1	0	0
CPA3	1359	broad.mit.edu	37	3	148614388	148614388	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:148614388G>A	uc003ewm.2	+	11	1200	c.1148G>A	c.(1147-1149)GGC>GAC	p.G383D		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	383					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			CGAGATAAAGGCAAATTTGGT	0.433													55	66					0	0	1	0	0
HLTF	6596	broad.mit.edu	37	3	148792128	148792128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:148792128G>A	uc003ewq.1	-	4	621	c.403C>T	c.(403-405)CCT>TCT	p.P135S	HLTF_uc003ewr.1_Missense_Mutation_p.P135S|HLTF_uc003ews.1_Missense_Mutation_p.P135S|HLTF_uc010hve.1_Missense_Mutation_p.P135S	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	135					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			GCACCAAAAGGAACTACCCTA	0.338													23	64					0	0	1	0	0
CP	1356	broad.mit.edu	37	3	148916196	148916196	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:148916196C>T	uc003ewy.3	-	9	1924	c.1671G>A	c.(1669-1671)ATG>ATA	p.M557I	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Missense_Mutation_p.M338I|CP_uc003ewz.2_Missense_Mutation_p.M557I|CP_uc010hvf.1_Missense_Mutation_p.M283I	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	557	Plastocyanin-like 3.|F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	TGCATATTTTCATTGGCCCAA	0.378													31	77					0	0	1	0	0
CP	1356	broad.mit.edu	37	3	148927953	148927953	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:148927953C>T	uc003ewy.3	-	3	860	c.607_splice	c.e3+1	p.D203_splice	CP_uc011bnr.1_Splice_Site|CP_uc003ewx.3_5'Flank|CP_uc003ewz.2_Splice_Site_p.D203_splice|CP_uc010hvf.1_5'Flank	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor						cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	AGAAGATGTACCTTTTTTACA	0.403													27	68					0	0	1	0	0
CP	1356	broad.mit.edu	37	3	148930248	148930248	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:148930248C>T	uc003ewy.3	-	2	637	c.384G>A	c.(382-384)AAG>AAA	p.K128K	CP_uc011bnr.1_RNA|CP_uc003ewz.2_Silent_p.K128K	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	128	F5/8 type A 1.|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	CCTCATGTTCCTTATAGTAAG	0.373													9	73					0	0	1	0	0
TM4SF18	116441	broad.mit.edu	37	3	149040164	149040164	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:149040164C>T	uc003exa.2	-	5	607	c.470G>A	c.(469-471)TGG>TAG	p.W157*		NM_138786	NP_620141	Q96CE8	T4S18_HUMAN	transmembrane 4 L six family member 18	157	Extracellular (Potential).					integral to membrane				ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			AATGATGTTCCACTCCACAAC	0.443													8	82					0	0	1	0	0
TM4SF4	7104	broad.mit.edu	37	3	149205458	149205458	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:149205458C>T	uc003exd.1	+	3	548	c.317C>T	c.(316-318)TCG>TTG	p.S106L		NM_004617	NP_004608	P48230	T4S4_HUMAN	transmembrane 4 superfamily member 4	106	Helical; (Potential).					integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			GCTGGATACTCGTTTATCATC	0.502													7	76					0	0	1	0	0
WWTR1	25937	broad.mit.edu	37	3	149290715	149290715	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:149290715G>A	uc003exe.2	-	2	520	c.504C>T	c.(502-504)CTC>CTT	p.L168L	WWTR1_uc003exf.2_Silent_p.L168L|WWTR1_uc011bns.1_Silent_p.L168L|WWTR1_uc003exh.2_Silent_p.L168L	NM_015472	NP_056287	Q9GZV5	WWTR1_HUMAN	WW domain containing transcription regulator 1	168					hippo signaling cascade|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of protein kinase activity|negative regulation of protein phosphorylation|positive regulation of cell proliferation|positive regulation of epithelial to mesenchymal transition|regulation of SMAD protein import into nucleus|stem cell division|transcription, DNA-dependent	cytoplasm	transcription coactivator activity			breast(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			CGGCAGGGTGGAGGTTCATAT	0.418													39	82					0	0	1	0	0
CLRN1	7401	broad.mit.edu	37	3	150659371	150659371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:150659371G>A	uc003eyk.1	-	2	722	c.431C>T	c.(430-432)TCA>TTA	p.S144L	CLRN1OS_uc011bny.1_Intron|CLRN1_uc003eyj.2_Missense_Mutation_p.S68L|CLRN1_uc010hvj.1_RNA	NM_174878	NP_777367	P58418	CLRN1_HUMAN	clarin 1 isoform a	144	Helical; (Potential).				equilibrioception|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			GTACTTACCTGAAATGAAGCT	0.358													16	57					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	150877775	150877775	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:150877775C>T	uc003eyp.2	+	7	1032	c.994C>T	c.(994-996)CCC>TCC	p.P332S	MED12L_uc011bnz.1_Intron|MED12L_uc003eyn.2_Missense_Mutation_p.P332S|MED12L_uc003eyo.2_Missense_Mutation_p.P332S	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	332					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TATCGGGGCCCCCAGCCCTGG	0.607													25	213					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	150881794	150881794	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:150881794C>T	uc003eyp.2	+	8	1260	c.1222C>T	c.(1222-1224)CCC>TCC	p.P408S	MED12L_uc011bnz.1_Intron|MED12L_uc003eyn.2_Missense_Mutation_p.P408S|MED12L_uc003eyo.2_Missense_Mutation_p.P408S	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	408					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GTCCAGCCTCCCCATGCCGGG	0.453													23	84					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	150881820	150881820	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:150881820C>T	uc003eyp.2	+	8	1286	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F	MED12L_uc011bnz.1_Intron|MED12L_uc003eyn.2_Silent_p.F416F|MED12L_uc003eyo.2_Silent_p.F416F	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	416					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ACACGGCTTTCAATCAGCAGG	0.388													33	75					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	150906174	150906174	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:150906174G>A	uc003eyp.2	+	12	1698	c.1660G>A	c.(1660-1662)GAG>AAG	p.E554K	MED12L_uc011bnz.1_Missense_Mutation_p.E414K|MED12L_uc003eyn.2_Missense_Mutation_p.E554K|MED12L_uc003eyo.2_Missense_Mutation_p.E554K	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	554					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGATGAGAAGGAGTCTATTTC	0.353													35	76					0	0	1	0	0
GPR171	29909	broad.mit.edu	37	3	150916563	150916563	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:150916563C>T	uc003eyq.3	-	3	851	c.611G>A	c.(610-612)CGA>CAA	p.R204Q	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	204	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GTAGAGCTGTCGAATTACAAG	0.328													19	45					0	0	1	0	0
P2RY14	9934	broad.mit.edu	37	3	150931954	150931954	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:150931954G>A	uc003eyr.1	-	3	629	c.151C>T	c.(151-153)CCC>TCC	p.P51S	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Missense_Mutation_p.P51S	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	51	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTAGAGCTGGGCACGTAAAAG	0.438													30	96					0	0	1	0	0
P2RY14	9934	broad.mit.edu	37	3	150932029	150932029	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:150932029G>A	uc003eyr.1	-	3	554	c.76C>T	c.(76-78)CCT>TCT	p.P26S	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Missense_Mutation_p.P26S	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	26	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TACAGCACAGGAATGATCTGC	0.458													35	107					0	0	1	0	0
GPR87	53836	broad.mit.edu	37	3	151012587	151012587	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151012587G>A	uc003eyt.2	-	3	808	c.447C>T	c.(445-447)GAC>GAT	p.D149D	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_023915	NP_076404	Q9BY21	GPR87_HUMAN	G protein-coupled receptor 87	149	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ACATCCGAGAGTCCCCAAATG	0.418													13	62					0	0	1	0	0
P2RY12	64805	broad.mit.edu	37	3	151056190	151056190	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151056190G>A	uc003eyw.1	-	2	660	c.444C>T	c.(442-444)ATC>ATT	p.I148I	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Silent_p.I148I	NM_176876	NP_795345	Q9H244	P2Y12_HUMAN	purinergic receptor P2Y12	148	Helical; Name=4; (Potential).				platelet activation	integral to membrane|plasma membrane	guanyl-nucleotide exchange factor activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)		Clopidogrel(DB00758)|Epoprostenol(DB01240)|Ticlopidine(DB00208)|Treprostinil(DB00374)	TGAATGCCCAGATGACAACAG	0.438													31	84					0	0	1	0	0
P2RY12	64805	broad.mit.edu	37	3	151056222	151056222	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151056222G>A	uc003eyw.1	-	2	628	c.412C>T	c.(412-414)CTC>TTC	p.L138F	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Missense_Mutation_p.L138F	NM_176876	NP_795345	Q9H244	P2Y12_HUMAN	purinergic receptor P2Y12	138	Cytoplasmic (Potential).				platelet activation	integral to membrane|plasma membrane	guanyl-nucleotide exchange factor activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)		Clopidogrel(DB00758)|Epoprostenol(DB01240)|Ticlopidine(DB00208)|Treprostinil(DB00374)	GCCCCCAAGAGATTTTTGGGG	0.423													34	81					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	151067847	151067847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151067847G>A	uc003eyp.2	+	15	2184	c.2146G>A	c.(2146-2148)GAT>AAT	p.D716N	MED12L_uc011bnz.1_Missense_Mutation_p.D576N|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	716					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGTTTTTCAGGATGAATCTTC	0.458													110	328					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	151085969	151085969	+	Silent	SNP	G	A	A	rs146195573		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151085969G>A	uc003eyp.2	+	23	3413	c.3375G>A	c.(3373-3375)GCG>GCA	p.A1125A	MED12L_uc011bnz.1_Silent_p.A985A|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Silent_p.A288A	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1125					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGCCTGGGGCGAGAATGACAT	0.517													9	54					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	151094619	151094619	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151094619G>A	uc003eyp.2	+	27	4018	c.3980G>A	c.(3979-3981)TGG>TAG	p.W1327*	MED12L_uc011bnz.1_Nonsense_Mutation_p.W1187*|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Nonsense_Mutation_p.W490*	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1327					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGGCAATCCTGGTTAGAACTC	0.343													12	73					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	151134155	151134155	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151134155C>T	uc003eyp.2	+	41	6286	c.6248C>T	c.(6247-6249)TCG>TTG	p.S2083L	MED12L_uc011bnz.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	2083	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			cagcagTCCTCGCAGTCCCAG	0.348													21	71					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151155646	151155646	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151155646G>A	uc011bod.1	-	6	6703	c.6703C>T	c.(6703-6705)CCA>TCA	p.P2235S	IGSF10_uc011bob.1_Missense_Mutation_p.P262S|IGSF10_uc011boc.1_Missense_Mutation_p.P214S	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2235	Ig-like C2-type 9.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTGATTAATGGAGGTTTAGAG	0.433													44	108					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151155953	151155953	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151155953G>A	uc011bod.1	-	6	6396	c.6396C>T	c.(6394-6396)GTC>GTT	p.V2132V	IGSF10_uc011bob.1_Silent_p.V159V|IGSF10_uc011boc.1_Silent_p.V111V	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2132	Ig-like C2-type 7.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTGTTAAGTGGACCTTCATTT	0.443													7	51					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151155959	151155959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151155959C>T	uc011bod.1	-	6	6390	c.6390G>A	c.(6388-6390)ATG>ATA	p.M2130I	IGSF10_uc011bob.1_Missense_Mutation_p.M157I|IGSF10_uc011boc.1_Missense_Mutation_p.M109I	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2130	Ig-like C2-type 7.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGTGGACCTTCATTTCATCTT	0.443													14	49					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151156198	151156198	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151156198G>A	uc011bod.1	-	6	6151	c.6151C>T	c.(6151-6153)CTC>TTC	p.L2051F	IGSF10_uc011bob.1_Missense_Mutation_p.L78F|IGSF10_uc011boc.1_Missense_Mutation_p.L30F	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2051	Ig-like C2-type 7.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTCCCATGGAGCACTTGCTTT	0.438													41	125					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151156369	151156369	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151156369G>A	uc011bod.1	-	6	5980	c.5980C>T	c.(5980-5982)CAC>TAC	p.H1994Y	IGSF10_uc011bob.1_Missense_Mutation_p.H21Y|IGSF10_uc011boc.1_5'UTR	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1994	Ig-like C2-type 6.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GGGTAGACGTGGATCCAGCTG	0.448													15	43					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151164261	151164261	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151164261C>T	uc011bod.1	-	4	3508	c.3508G>A	c.(3508-3510)GAA>AAA	p.E1170K		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1170					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTTTTAGCTTCATTGGTGCTA	0.418													106	273					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151165602	151165602	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151165602C>T	uc011bod.1	-	4	2167	c.2167G>A	c.(2167-2169)GAA>AAA	p.E723K		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	723					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGTGTTAATTCCCGATAGTTG	0.493													28	46					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151165861	151165861	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151165861G>A	uc011bod.1	-	4	1908	c.1908C>T	c.(1906-1908)ACC>ACT	p.T636T		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	636	Ig-like C2-type 2.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GGTCTTTCGGGGTGACCTGTA	0.418													31	95					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151166599	151166599	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151166599C>T	uc011bod.1	-	4	1170	c.1170G>A	c.(1168-1170)AGG>AGA	p.R390R		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	390					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCAAGTGGCTCCTTTCTAGTA	0.413													28	34					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151167023	151167023	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151167023G>A	uc011bod.1	-	4	746	c.746C>T	c.(745-747)CCC>CTC	p.P249L		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	249	LRRCT.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGCACTAGAGGGACTTCTATC	0.398													29	63					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151171418	151171418	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151171418G>A	uc011bod.1	-	3	469	c.469C>T	c.(469-471)CTG>TTG	p.L157L		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	157	LRR 5.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AAGTGCACCAGGCGGAGAAAG	0.413													34	85					0	0	1	0	0
AADACL2	344752	broad.mit.edu	37	3	151451837	151451837	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151451837C>T	uc003ezc.2	+	1	134	c.14C>T	c.(13-15)GCT>GTT	p.A5V	AADACL2_uc010hvn.2_5'UTR	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	5						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GGGCTAAAAGCTCTCTGTTTG	0.388													11	18					0	0	1	0	0
AADACL2	344752	broad.mit.edu	37	3	151474779	151474779	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151474779G>A	uc003ezc.2	+	5	724	c.604_splice	c.e5-1	p.V202_splice	AADACL2_uc010hvn.2_Splice_Site	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor							extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TATATTTTCAGGTGCAGAATG	0.303													26	52					0	0	1	0	0
AADAC	13	broad.mit.edu	37	3	151542595	151542595	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151542595G>A	uc003eze.2	+	4	666	c.576G>A	c.(574-576)GGG>GGA	p.G192G		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	192	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GTGCAGGAGGGAATTTAGCTG	0.338													13	51					0	0	1	0	0
AADAC	13	broad.mit.edu	37	3	151545475	151545475	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151545475C>T	uc003eze.2	+	5	805	c.715C>T	c.(715-717)CTA>TTA	p.L239L		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	239	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TTCAAATTTTCTATTTCTATC	0.368													34	71					0	0	1	0	0
AADAC	13	broad.mit.edu	37	3	151545614	151545614	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151545614C>T	uc003eze.2	+	5	944	c.854C>T	c.(853-855)TCC>TTC	p.S285F		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	285	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			AATTGGAGTTCCCTGCTCCCT	0.383													40	98					0	0	1	0	0
SUCNR1	56670	broad.mit.edu	37	3	151597688	151597688	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151597688G>A	uc003ezf.1	+	2	107	c.8G>A	c.(7-9)GGG>GAG	p.G3E		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	3						integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	GACATGCTGGGGATCATGGTA	0.234													16	67					0	0	1	0	0
SUCNR1	56670	broad.mit.edu	37	3	151599232	151599232	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:151599232C>T	uc003ezf.1	+	3	1000	c.901C>T	c.(901-903)CAC>TAC	p.H301Y		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	301	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	TTTGGGAGATCACTTCAGGGA	0.433													46	108					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154139092	154139092	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:154139092T>A	uc003faa.2	-	3	1459	c.1359A>T	c.(1357-1359)AAA>AAT	p.K453N		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	453	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TGATTTCTACTTTTATAGCAT	0.398													53	203					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154146656	154146656	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:154146656G>A	uc003faa.2	-	1	849	c.749C>T	c.(748-750)TCC>TTC	p.S250F		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	250	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TGGGGACAGGGAAACCACTCT	0.652													9	54					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154147141	154147141	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:154147141G>A	uc003faa.2	-	1	364	c.264C>T	c.(262-264)TTC>TTT	p.F88F		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	88	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			GCAAAAACATGAAGATGGTCA	0.483													21	129					0	0	1	0	0
MME	4311	broad.mit.edu	37	3	154860056	154860056	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:154860056C>T	uc010hvr.1	+	12	1336	c.1125C>T	c.(1123-1125)TTC>TTT	p.F375F	MME_uc003fab.1_Silent_p.F375F|MME_uc003fac.1_Silent_p.F375F|MME_uc003fad.1_Silent_p.F375F|MME_uc003fae.1_Silent_p.F375F	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	375	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	CCTGGAGATTCATAATGGATC	0.398													37	104					0	0	1	0	0
MME	4311	broad.mit.edu	37	3	154860085	154860085	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:154860085G>A	uc010hvr.1	+	12	1365	c.1154G>A	c.(1153-1155)CGA>CAA	p.R385Q	MME_uc003fab.1_Missense_Mutation_p.R385Q|MME_uc003fac.1_Missense_Mutation_p.R385Q|MME_uc003fad.1_Missense_Mutation_p.R385Q|MME_uc003fae.1_Missense_Mutation_p.R385Q	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	385	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	AGCCTCAGCCGAACCTACAAG	0.383													11	108					0	0	1	0	0
MME	4311	broad.mit.edu	37	3	154861319	154861319	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:154861319C>T	uc010hvr.1	+	13	1487	c.1276C>T	c.(1276-1278)CTT>TTT	p.L426F	MME_uc003fab.1_Missense_Mutation_p.L426F|MME_uc003fac.1_Missense_Mutation_p.L426F|MME_uc003fad.1_Missense_Mutation_p.L426F|MME_uc003fae.1_Missense_Mutation_p.L426F	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	426	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	TGTGGGGAGGCTTTATGTGGA	0.413													55	142					0	0	1	0	0
MME	4311	broad.mit.edu	37	3	154886389	154886389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:154886389C>T	uc010hvr.1	+	19	2100	c.1889C>T	c.(1888-1890)TCC>TTC	p.S630F	MME_uc003fab.1_Missense_Mutation_p.S630F|MME_uc003fac.1_Missense_Mutation_p.S630F|MME_uc003fad.1_Missense_Mutation_p.S630F|MME_uc003fae.1_Missense_Mutation_p.S630F	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	630	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	GGAAACTTTTCCTGGGACCTG	0.403													38	101					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155198856	155198856	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155198856G>A	uc011bok.1	-	23	5260	c.4983C>T	c.(4981-4983)CAC>CAT	p.H1661H	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.H1623H	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1661					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CGTGGCCATAGTGAAGAGCCG	0.507													24	28					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155199125	155199125	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155199125G>A	uc011bok.1	-	23	4991	c.4714C>T	c.(4714-4716)CGG>TGG	p.R1572W	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.R1534W	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1572					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			ACCAGTGCCCGGGGGAGCTGA	0.512													23	98					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155200508	155200508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155200508C>T	uc011bok.1	-	23	3608	c.3331G>A	c.(3331-3333)GGT>AGT	p.G1111S	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.G1073S	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1111					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TCAGGATTACCCTTTTCCTTG	0.473													43	91					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155200514	155200514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155200514C>T	uc011bok.1	-	23	3602	c.3325G>A	c.(3325-3327)GAA>AAA	p.E1109K	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.E1071K	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1109					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTACCCTTTTCCTTGATTTTC	0.468													53	100					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155203214	155203214	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155203214G>A	uc011bok.1	-	22	3206	c.2929C>T	c.(2929-2931)CTT>TTT	p.L977F	PLCH1_uc011boj.1_Missense_Mutation_p.L977F|PLCH1_uc011bol.1_Missense_Mutation_p.L939F	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	977					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GCTCCCAGAAGGTTTCTGTCA	0.468													35	103					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155203216	155203216	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155203216T>C	uc011bok.1	-	22	3204	c.2927A>G	c.(2926-2928)AAC>AGC	p.N976S	PLCH1_uc011boj.1_Missense_Mutation_p.N976S|PLCH1_uc011bol.1_Missense_Mutation_p.N938S	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	976					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TCCCAGAAGGTTTCTGTCAAC	0.468													35	103					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155203411	155203411	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155203411C>T	uc011bok.1	-	22	3009	c.2732G>A	c.(2731-2733)CGA>CAA	p.R911Q	PLCH1_uc011boj.1_Missense_Mutation_p.R911Q|PLCH1_uc011bol.1_Missense_Mutation_p.R873Q	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	911					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TCCAATGGATCGCTTCCGTAC	0.458													17	64					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155212010	155212010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155212010C>T	uc011bok.1	-	16	2343	c.2066G>A	c.(2065-2067)CGA>CAA	p.R689Q	PLCH1_uc011boj.1_Missense_Mutation_p.R689Q|PLCH1_uc011bol.1_Missense_Mutation_p.R671Q	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	689	PI-PLC Y-box.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CTGCATCATTCGTCCTTCAGA	0.418													21	73					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155222375	155222375	+	Missense_Mutation	SNP	C	T	T	rs149590749	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155222375C>T	uc011bok.1	-	12	1914	c.1637G>A	c.(1636-1638)CGA>CAA	p.R546Q	PLCH1_uc011boj.1_Missense_Mutation_p.R546Q|PLCH1_uc011bol.1_Missense_Mutation_p.R528Q	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	546					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CATGAGGGATCGTCCATGTGA	0.269													23	68					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155232579	155232579	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155232579G>A	uc011bok.1	-	11	1806	c.1529C>T	c.(1528-1530)CCT>CTT	p.P510L	PLCH1_uc011boj.1_Missense_Mutation_p.P510L|PLCH1_uc011bol.1_Missense_Mutation_p.P492L	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	510					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GAAACTATCAGGATCTTCTTT	0.428													13	46					0	0	1	0	0
GMPS	8833	broad.mit.edu	37	3	155643132	155643132	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155643132C>T	uc003faq.2	+	12	1872	c.1537C>T	c.(1537-1539)CCA>TCA	p.P513S	GMPS_uc011bom.1_Missense_Mutation_p.P414S	NM_003875	NP_003866	P49915	GUAA_HUMAN	guanine monophosphate synthetase	513					glutamine metabolic process|purine base biosynthetic process	cytosol	ATP binding|GMP synthase (glutamine-hydrolyzing) activity|GMP synthase activity			ovary(2)|lung(1)	3			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CTTCTTGCTGCCAATTAAAAC	0.338			T	MLL	AML								20	21					0	0	1	0	0
GMPS	8833	broad.mit.edu	37	3	155649647	155649647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:155649647C>T	uc003faq.2	+	13	1989	c.1654C>T	c.(1654-1656)CGC>TGC	p.R552C	GMPS_uc011bom.1_Missense_Mutation_p.R453C	NM_003875	NP_003866	P49915	GUAA_HUMAN	guanine monophosphate synthetase	552					glutamine metabolic process|purine base biosynthetic process	cytosol	ATP binding|GMP synthase (glutamine-hydrolyzing) activity|GMP synthase activity			ovary(2)|lung(1)	3			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCTTATACCTCGCATGTGTCA	0.438			T	MLL	AML								56	171					0	0	1	0	0
TIPARP	25976	broad.mit.edu	37	3	156395585	156395585	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:156395585C>T	uc003fav.2	+	2	347	c.99C>T	c.(97-99)ATC>ATT	p.I33I	LOC100287227_uc011boq.1_5'Flank|TIPARP_uc003faw.2_Silent_p.I33I	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	33							NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			CTGAGAAGATCACTCCATTGA	0.433													20	147					0	0	1	0	0
TIPARP	25976	broad.mit.edu	37	3	156395948	156395948	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:156395948C>T	uc003fav.2	+	2	710	c.462C>T	c.(460-462)TCC>TCT	p.S154S	LOC100287227_uc011boq.1_5'Flank|TIPARP_uc003faw.2_Silent_p.S154S	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	154							NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			TGGCAGATTCCACACCAGCTC	0.488													59	145					0	0	1	0	0
LEKR1	389170	broad.mit.edu	37	3	156711020	156711020	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:156711020C>T	uc003fba.1	+	10	1486	c.151C>T	c.(151-153)CTT>TTT	p.L51F		NM_001004316	NP_001004316	Q6ZMV7	LEKR1_HUMAN	leucine, glutamate and lysine rich 1	64											0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			AACCAAAACTCTTCTGAATCA	0.323													10	112					0	0	1	0	0
LEKR1	389170	broad.mit.edu	37	3	156711062	156711062	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:156711062G>A	uc003fba.1	+	10	1528	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_001004316	NP_001004316	Q6ZMV7	LEKR1_HUMAN	leucine, glutamate and lysine rich 1	74											0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			ACTGAAAAATGAAAGGTGCAG	0.294													19	68					0	0	1	0	0
SHOX2	6474	broad.mit.edu	37	3	157817725	157817725	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:157817725C>T	uc003fbr.2	-	4	765	c.626G>A	c.(625-627)GGG>GAG	p.G209E	SHOX2_uc003fbs.2_Missense_Mutation_p.G233E|SHOX2_uc010hvw.2_Missense_Mutation_p.G209E	NM_006884	NP_006875	O60902	SHOX2_HUMAN	short stature homeobox 2 isoform a	209					nervous system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			Lung(72;0.00318)|LUSC - Lung squamous cell carcinoma(72;0.0043)			GCTGGCGGCCCCTATGAGAAC	0.438													10	43					0	0	1	0	0
SCHIP1	29970	broad.mit.edu	37	3	159584018	159584018	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:159584018C>T	uc003fcs.1	+	3	892	c.826C>T	c.(826-828)CCA>TCA	p.P276S	SCHIP1_uc003fcq.1_Missense_Mutation_p.P352S|SCHIP1_uc003fcr.1_Missense_Mutation_p.P265S|SCHIP1_uc003fct.1_Missense_Mutation_p.P263S|SCHIP1_uc010hvz.1_Missense_Mutation_p.P236S|SCHIP1_uc003fcu.1_Missense_Mutation_p.P33S|SCHIP1_uc003fcv.1_Missense_Mutation_p.P49S	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	276						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			TGATGATGGCCCAGGAATTTA	0.398													59	165					0	0	1	0	0
SCHIP1	29970	broad.mit.edu	37	3	159605610	159605610	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:159605610G>A	uc003fcs.1	+	5	1176	c.1110G>A	c.(1108-1110)ATG>ATA	p.M370I	SCHIP1_uc003fcq.1_Missense_Mutation_p.M446I|SCHIP1_uc003fcr.1_Missense_Mutation_p.M359I|SCHIP1_uc003fct.1_Missense_Mutation_p.M357I|SCHIP1_uc010hvz.1_Missense_Mutation_p.M330I|SCHIP1_uc003fcu.1_Missense_Mutation_p.M127I|SCHIP1_uc003fcv.1_Missense_Mutation_p.M143I	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	370						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			AAGCCAAAATGGCCCTTGCCA	0.453													35	101					0	0	1	0	0
IL12A	3592	broad.mit.edu	37	3	159708044	159708044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:159708044C>T	uc003fcx.2	+	2	424	c.209C>T	c.(208-210)CCA>CTA	p.P70L	uc003fcw.1_Intron	NM_000882	NP_000873	P29459	IL12A_HUMAN	interleukin 12A precursor	36					cell cycle arrest|cell migration|defense response to Gram-positive bacterium|immune response|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of cell adhesion|positive regulation of interferon-gamma production|positive regulation of natural killer cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of NK T cell activation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of tyrosine phosphorylation of Stat4 protein|response to lipopolysaccharide|response to UV-B|response to virus	interleukin-12 complex	cytokine activity|growth factor activity|interleukin-12 receptor binding|interleukin-27 binding|protein heterodimerization activity				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			GGAATGTTCCCATGCCTTCAC	0.602													17	60					0	0	1	0	0
IFT80	57560	broad.mit.edu	37	3	159997081	159997081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:159997081G>A	uc011boy.1	-	16	2169	c.1736C>T	c.(1735-1737)TCC>TTC	p.S579F	IFT80_uc003fda.2_RNA|IFT80_uc003fdb.1_Missense_Mutation_p.S442F|IFT80_uc003fdd.1_Missense_Mutation_p.S262F|IFT80_uc003fde.1_Missense_Mutation_p.S442F	NM_020800	NP_065851	Q9P2H3	IFT80_HUMAN	WD repeat domain 56	579						cilium axoneme|microtubule basal body				ovary(1)	1			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			GTGAACCAGGGAGCCATCAGC	0.358													26	55					0	0	1	0	0
B3GALNT1	8706	broad.mit.edu	37	3	160803840	160803840	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:160803840G>A	uc003fdv.2	-	5	1122	c.703C>T	c.(703-705)CCT>TCT	p.P235S	B3GALNT1_uc003fdw.2_Missense_Mutation_p.P235S|B3GALNT1_uc003fdx.2_Missense_Mutation_p.P235S|B3GALNT1_uc003fdy.2_Missense_Mutation_p.P235S|B3GALNT1_uc003fdz.2_Missense_Mutation_p.P235S|B3GALNT1_uc003fea.2_Missense_Mutation_p.P235S|B3GALNT1_uc011bpa.1_Intron	NM_033169	NP_149359	O75752	B3GL1_HUMAN	UDP-Gal:betaGlcNAc beta	235	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;4.41e-05)|Lung(72;4.61e-05)			CAGTATGGAGGGAACACCTTG	0.378													25	74					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161214670	161214670	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:161214670C>T	uc011bpb.1	+	1	75	c.75C>T	c.(73-75)ACC>ACT	p.T25T		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	25						collagen					0						TAGCAAAGACCACACCACATA	0.393													7	14					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161214772	161214772	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:161214772C>T	uc011bpb.1	+	1	177	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	59						collagen					0						AAACCCTCTTCACAGAAATGG	0.468													30	72					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161214865	161214865	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:161214865C>T	uc011bpb.1	+	1	270	c.270C>T	c.(268-270)TTC>TTT	p.F90F		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	90						collagen					0						TTGAAAACTTCACTCTTGACC	0.473													34	155					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161221230	161221230	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:161221230G>A	uc011bpb.1	+	4	934	c.934G>A	c.(934-936)GAC>AAC	p.D312N		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	312	Collagen-like 3.					collagen					0						GCCGAAGGGTGACATTGGCAA	0.582													8	23					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161221279	161221279	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:161221279G>A	uc011bpb.1	+	4	983	c.983G>A	c.(982-984)CGG>CAG	p.R328Q		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	328	Collagen-like 3.					collagen					0						AAGGGCTCTCGGGGCTTTAAA	0.572													7	16					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161221357	161221357	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:161221357C>T	uc011bpb.1	+	4	1061	c.1061C>T	c.(1060-1062)CCT>CTT	p.P354L		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	354	C1q.					collagen					0						AAGCCATTTCCTCCTCCTAAC	0.498													15	30					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161221429	161221429	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:161221429G>A	uc011bpb.1	+	4	1133	c.1133G>A	c.(1132-1134)GGG>GAG	p.G378E		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	378	C1q.					collagen					0						CCTGTCACTGGGAAGTTTAAC	0.448													11	29					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164732947	164732947	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164732947G>A	uc003fei.2	-	33	4025	c.3963C>T	c.(3961-3963)GTC>GTT	p.V1321V		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1321	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TTGGCCATTTGACAAAGACAT	0.303										HNSCC(35;0.089)			18	61					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164733803	164733803	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164733803G>A	uc003fei.2	-	32	3887	c.3825C>T	c.(3823-3825)TTC>TTT	p.F1275F		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1275	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GAAGGTCCTGGAATGCTTCAC	0.373										HNSCC(35;0.089)			61	146					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164741402	164741402	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164741402G>A	uc003fei.2	-	26	3117	c.3055C>T	c.(3055-3057)CGT>TGT	p.R1019C		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1019	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACCTCCACACGAAGAGTTGAG	0.393										HNSCC(35;0.089)			32	106					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164776773	164776773	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164776773C>T	uc003fei.2	-	12	1438	c.1376G>A	c.(1375-1377)GGA>GAA	p.G459E		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	459	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TGGTGTACTTCCATCTGACTC	0.348										HNSCC(35;0.089)			9	45					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164783108	164783108	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164783108G>A	uc003fei.2	-	7	810	c.748C>T	c.(748-750)CGT>TGT	p.R250C		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	250	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AAATCATGACGAAATCTCTTA	0.343										HNSCC(35;0.089)			27	47					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164905885	164905885	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164905885C>T	uc003fej.3	-	2	3178	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K	SLITRK3_uc003fek.2_Missense_Mutation_p.E912K	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	912	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						ACGTGCAGTTCCTTTAATTTG	0.532										HNSCC(40;0.11)			30	80					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906248	164906248	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164906248G>A	uc003fej.3	-	2	2815	c.2371C>T	c.(2371-2373)CTC>TTC	p.L791F	SLITRK3_uc003fek.2_Missense_Mutation_p.L791F	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	791	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CTTCCTAGGAGAGCCTCACCC	0.572										HNSCC(40;0.11)			39	78					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906683	164906683	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164906683G>A	uc003fej.3	-	2	2380	c.1936C>T	c.(1936-1938)CCT>TCT	p.P646S	SLITRK3_uc003fek.2_Missense_Mutation_p.P646S	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	646	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CCCCCAGGAGGAGAAAACTCA	0.532										HNSCC(40;0.11)			10	27					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907225	164907225	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164907225C>T	uc003fej.3	-	2	1838	c.1394G>A	c.(1393-1395)GGC>GAC	p.G465D	SLITRK3_uc003fek.2_Missense_Mutation_p.G465D	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	465	LRR 9.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						TATATCGTTGCCATTAAGGAA	0.463										HNSCC(40;0.11)			14	44					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164908361	164908361	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164908361C>A	uc003fej.3	-	2	702	c.258G>T	c.(256-258)AGG>AGT	p.R86S	SLITRK3_uc003fek.2_Missense_Mutation_p.R86S	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	86	LRR 1.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						TCATAGAATTCCTCTGCAGAT	0.348										HNSCC(40;0.11)			33	68					4.02929e-09	4.04213e-09	1	1	0
SLITRK3	22865	broad.mit.edu	37	3	164908493	164908493	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:164908493C>T	uc003fej.3	-	2	570	c.126G>A	c.(124-126)GAG>GAA	p.E42E	SLITRK3_uc003fek.2_Silent_p.E42E	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	42	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CAAAACAGGGCTCATCTATTT	0.393										HNSCC(40;0.11)			15	115					0	0	1	0	0
BCHE	590	broad.mit.edu	37	3	165503967	165503968	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:165503967_165503968CC>TT	uc003fem.3	-	3	1809_1810	c.1649_1650GG>AA	c.(1648-1650)TGG>TAA	p.W550*	BCHE_uc003fen.3_RNA	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	550					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	AAAATGATGTCCAGAATCGACA	0.351													10	67					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	166958581	166958581	+	Nonstop_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:166958581T>A	uc003fep.2	-	21	2726	c.2403A>T	c.(2401-2403)TAA>TAT	p.*801Y	ZBBX_uc011bpc.1_Nonstop_Mutation_p.*840Y|ZBBX_uc003feq.2_Nonstop_Mutation_p.*772Y	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	801						intracellular	zinc ion binding			ovary(2)	2						CAAATAATCTTTAAGTACTCT	0.388													34	90					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	166958637	166958637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:166958637C>T	uc003fep.2	-	21	2670	c.2347G>A	c.(2347-2349)GAA>AAA	p.E783K	ZBBX_uc011bpc.1_Missense_Mutation_p.E822K|ZBBX_uc003feq.2_Missense_Mutation_p.E754K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	783	Poly-Glu.					intracellular	zinc ion binding			ovary(2)	2						AGAAAATCTTCCTCCTCCTCA	0.368													38	81					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	167023529	167023529	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167023529C>T	uc003fep.2	-	17	1950	c.1627G>A	c.(1627-1629)GAG>AAG	p.E543K	ZBBX_uc011bpc.1_Missense_Mutation_p.E543K|ZBBX_uc003feq.2_Missense_Mutation_p.E514K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	543						intracellular	zinc ion binding			ovary(2)	2						AATTTCTCCTCAATGGGAGCT	0.353													24	48					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	167039933	167039933	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167039933C>T	uc003fep.2	-	12	1278	c.955G>A	c.(955-957)GAA>AAA	p.E319K	ZBBX_uc011bpc.1_Missense_Mutation_p.E319K|ZBBX_uc003feq.2_Missense_Mutation_p.E290K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	319						intracellular	zinc ion binding			ovary(2)	2						CATAATTTTTCCATATAGGAT	0.289													29	68					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	167045758	167045758	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167045758C>T	uc003fep.2	-	11	1157	c.834G>A	c.(832-834)AAG>AAA	p.K278K	ZBBX_uc011bpc.1_Silent_p.K278K|ZBBX_uc003feq.2_Silent_p.K249K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	278						intracellular	zinc ion binding			ovary(2)	2						AATTCTGTTTCTTGTTGTCAT	0.284													50	91					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	167051693	167051693	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167051693C>T	uc003fep.2	-	10	932	c.609G>A	c.(607-609)GAG>GAA	p.E203E	ZBBX_uc011bpc.1_Silent_p.E203E|ZBBX_uc003feq.2_Silent_p.E174E	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	203						intracellular	zinc ion binding			ovary(2)	2						AATTATTCTCCTCTTTGGGTT	0.328													19	57					0	0	1	0	0
SERPINI2	5276	broad.mit.edu	37	3	167159920	167159920	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167159920C>T	uc003fer.1	-	8	1253	c.1195G>A	c.(1195-1197)GGA>AGA	p.G399R	SERPINI2_uc003fes.1_Missense_Mutation_p.G409R|SERPINI2_uc003fet.1_Missense_Mutation_p.G399R	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	399					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						AAATCTCTTCCTTTTATCTCC	0.328													16	31					0	0	1	0	0
SERPINI2	5276	broad.mit.edu	37	3	167164253	167164253	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167164253C>T	uc003fer.1	-	7	1126	c.1068G>A	c.(1066-1068)GTG>GTA	p.V356V	SERPINI2_uc003fes.1_Silent_p.V366V|SERPINI2_uc003fet.1_Silent_p.V356V	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	356					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						GACTCATGATCACAGGGATGT	0.318													24	106					0	0	1	0	0
SERPINI2	5276	broad.mit.edu	37	3	167184964	167184964	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167184964C>T	uc003fer.1	-	2	415	c.357G>A	c.(355-357)GTG>GTA	p.V119V	SERPINI2_uc003fes.1_Silent_p.V129V|SERPINI2_uc003fet.1_Silent_p.V119V	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	119					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						ACTGTTCTTTCACAGTGAATC	0.368													33	75					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167240194	167240194	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167240194C>T	uc003fev.1	-	12	1933	c.1627G>A	c.(1627-1629)GAA>AAA	p.E543K	WDR49_uc003feu.1_Missense_Mutation_p.E368K|WDR49_uc011bpd.1_Intron|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	543										large_intestine(1)|ovary(1)|skin(1)	3						AAAGAAATTTCCTTTTGAATC	0.318													49	28					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167240254	167240254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167240254C>T	uc003fev.1	-	12	1873	c.1567G>A	c.(1567-1569)GAA>AAA	p.E523K	WDR49_uc003feu.1_Missense_Mutation_p.E348K|WDR49_uc011bpd.1_Intron|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	523										large_intestine(1)|ovary(1)|skin(1)	3						AGGCAGTTTTCAATATGCCAG	0.244													17	57					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167247009	167247009	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167247009G>A	uc003fev.1	-	10	1487	c.1181C>T	c.(1180-1182)TCA>TTA	p.S394L	WDR49_uc003feu.1_Missense_Mutation_p.S219L|WDR49_uc011bpd.1_Missense_Mutation_p.S458L|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	394	WD 6.									large_intestine(1)|ovary(1)|skin(1)	3						TCCTCCACATGATACCAGGTT	0.383													27	48					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167272581	167272581	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167272581C>T	uc003fev.1	-	6	963	c.657G>A	c.(655-657)TGG>TGA	p.W219*	WDR49_uc003feu.1_Nonsense_Mutation_p.W44*|WDR49_uc011bpd.1_Nonsense_Mutation_p.W272*|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	219	WD 4.									large_intestine(1)|ovary(1)|skin(1)	3						CATTGAAGTCCCATATCTTTA	0.318													42	97					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167293777	167293777	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167293777C>T	uc003fev.1	-	4	721	c.415G>A	c.(415-417)GAA>AAA	p.E139K	WDR49_uc003feu.1_5'Flank|WDR49_uc011bpd.1_Missense_Mutation_p.E192K|WDR49_uc003few.1_Missense_Mutation_p.E480K	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	139										large_intestine(1)|ovary(1)|skin(1)	3						TTGCTGGCTTCACTTTTCATT	0.408													69	158					0	0	1	0	0
PDCD10	11235	broad.mit.edu	37	3	167437899	167437899	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167437899G>A	uc003fex.2	-	3	445	c.47C>T	c.(46-48)TCC>TTC	p.S16F	PDCD10_uc003fez.2_Missense_Mutation_p.S16F|PDCD10_uc003fey.2_Missense_Mutation_p.S16F	NM_007217	NP_009148	Q9BUL8	PDC10_HUMAN	programmed cell death 10	16					angiogenesis|apoptosis|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of MAP kinase activity	cytosol|Golgi membrane|plasma membrane	protein homodimerization activity|protein N-terminus binding			lung(1)|central_nervous_system(1)	2						AGAAACCATGGATGTGGTCTC	0.398									Familial_Cerebral_Cavernous_Angioma				30	76					0	0	1	0	0
SERPINI1	5274	broad.mit.edu	37	3	167512518	167512518	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167512518C>T	uc003ffa.3	+	5	985	c.787C>T	c.(787-789)CCT>TCT	p.P263S	SERPINI1_uc003ffb.3_Missense_Mutation_p.P263S	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	263					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						ACAGGAAGTTCCTCTTGCTAC	0.448													23	42					0	0	1	0	0
SERPINI1	5274	broad.mit.edu	37	3	167525098	167525098	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167525098C>T	uc003ffa.3	+	6	1146	c.948C>T	c.(946-948)TTC>TTT	p.F316F	SERPINI1_uc003ffb.3_Silent_p.F316F	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	316					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						CTGAAATTTTCATCAAAGATG	0.294													15	100					0	0	1	0	0
GOLIM4	27333	broad.mit.edu	37	3	167747817	167747817	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:167747817G>A	uc003ffe.2	-	10	1528	c.1184C>T	c.(1183-1185)CCT>CTT	p.P395L	GOLIM4_uc011bpe.1_Missense_Mutation_p.P395L|GOLIM4_uc011bpf.1_Missense_Mutation_p.P367L|GOLIM4_uc011bpg.1_Missense_Mutation_p.P367L	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	395	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						CTTGGCTGAAGGGTACACCTA	0.478													31	60					0	0	1	0	0
MIR551B	693136	broad.mit.edu	37	3	168269701	168269701	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168269701G>A	hsa-mir-551b|MI0003575	+			c.60G>A																				0						AGAACGGGAAGGCGACCCATA	0.453													15	49					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168807887	168807887	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168807887C>T	uc003ffi.3	-	14	3007	c.2738G>A	c.(2737-2739)GGA>GAA	p.G913E	MECOM_uc010hwk.1_Missense_Mutation_p.G927E|MECOM_uc003ffj.3_Missense_Mutation_p.G978E|MECOM_uc011bpi.1_Missense_Mutation_p.G905E|MECOM_uc003ffn.3_Missense_Mutation_p.G913E|MECOM_uc003ffk.2_Missense_Mutation_p.G904E|MECOM_uc003ffl.2_Missense_Mutation_p.G1064E|MECOM_uc011bpj.1_Missense_Mutation_p.G1101E|MECOM_uc011bpk.1_Missense_Mutation_p.G903E	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	913	Asp/Glu-rich (acidic).				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TGGTTCCTTTCCTGTTTTTCC	0.428													64	149					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168812899	168812899	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168812899C>T	uc003ffi.3	-	12	2689	c.2420G>A	c.(2419-2421)AGA>AAA	p.R807K	MECOM_uc010hwk.1_Missense_Mutation_p.R821K|MECOM_uc003ffj.3_Missense_Mutation_p.R872K|MECOM_uc011bpi.1_Missense_Mutation_p.R799K|MECOM_uc003ffn.3_Missense_Mutation_p.R807K|MECOM_uc003ffk.2_Missense_Mutation_p.R798K|MECOM_uc003ffl.2_Missense_Mutation_p.R958K|MECOM_uc011bpj.1_Missense_Mutation_p.R995K|MECOM_uc011bpk.1_Missense_Mutation_p.R797K	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	807	C2H2-type 10.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CTTTAGGTGTCTGTCTAAATT	0.343													13	44					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168819864	168819864	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168819864C>T	uc003ffi.3	-	10	2460	c.2191G>A	c.(2191-2193)GAG>AAG	p.E731K	MECOM_uc010hwk.1_Missense_Mutation_p.E745K|MECOM_uc003ffj.3_Missense_Mutation_p.E796K|MECOM_uc011bpi.1_Missense_Mutation_p.E723K|MECOM_uc003ffn.3_Missense_Mutation_p.E731K|MECOM_uc003ffk.2_Missense_Mutation_p.E722K|MECOM_uc003ffl.2_Missense_Mutation_p.E882K|MECOM_uc011bpj.1_Missense_Mutation_p.E919K|MECOM_uc011bpk.1_Missense_Mutation_p.E721K|MECOM_uc010hwn.2_Missense_Mutation_p.E910K	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	731					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GTATAGCGCTCCTTTCCCTTC	0.483													13	43					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168833244	168833244	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168833244C>T	uc003ffi.3	-	7	2121	c.1852G>A	c.(1852-1854)GAA>AAA	p.E618K	MECOM_uc010hwk.1_Missense_Mutation_p.E641K|MECOM_uc003ffj.3_Missense_Mutation_p.E683K|MECOM_uc011bpi.1_Missense_Mutation_p.E619K|MECOM_uc003ffn.3_Missense_Mutation_p.E618K|MECOM_uc003ffk.2_Missense_Mutation_p.E618K|MECOM_uc003ffl.2_Missense_Mutation_p.E778K|MECOM_uc011bpj.1_Missense_Mutation_p.E806K|MECOM_uc011bpk.1_Missense_Mutation_p.E608K|MECOM_uc010hwn.2_Missense_Mutation_p.E806K	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	618					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GGTCTTGATTCGACGTTGCTT	0.473													6	55					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168833388	168833388	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168833388G>A	uc003ffi.3	-	7	1977	c.1708C>T	c.(1708-1710)CCC>TCC	p.P570S	MECOM_uc010hwk.1_Missense_Mutation_p.P593S|MECOM_uc003ffj.3_Missense_Mutation_p.P635S|MECOM_uc011bpi.1_Missense_Mutation_p.P571S|MECOM_uc003ffn.3_Missense_Mutation_p.P570S|MECOM_uc003ffk.2_Missense_Mutation_p.P570S|MECOM_uc003ffl.2_Missense_Mutation_p.P730S|MECOM_uc011bpj.1_Missense_Mutation_p.P758S|MECOM_uc011bpk.1_Missense_Mutation_p.P560S|MECOM_uc010hwn.2_Missense_Mutation_p.P758S	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	570					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GGCTTGGAGGGGACTGGAGTC	0.547													14	54					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168833569	168833569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168833569G>A	uc003ffi.3	-	7	1796	c.1527C>T	c.(1525-1527)CTC>CTT	p.L509L	MECOM_uc010hwk.1_Silent_p.L532L|MECOM_uc003ffj.3_Silent_p.L574L|MECOM_uc011bpi.1_Silent_p.L510L|MECOM_uc003ffn.3_Silent_p.L509L|MECOM_uc003ffk.2_Silent_p.L509L|MECOM_uc003ffl.2_Silent_p.L669L|MECOM_uc011bpj.1_Silent_p.L697L|MECOM_uc011bpk.1_Silent_p.L499L|MECOM_uc010hwn.2_Silent_p.L697L	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	509					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GAAAAAATGGGAGGGGAAACA	0.418													37	85					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168833573	168833573	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168833573G>A	uc003ffi.3	-	7	1792	c.1523C>T	c.(1522-1524)CCC>CTC	p.P508L	MECOM_uc010hwk.1_Missense_Mutation_p.P531L|MECOM_uc003ffj.3_Missense_Mutation_p.P573L|MECOM_uc011bpi.1_Missense_Mutation_p.P509L|MECOM_uc003ffn.3_Missense_Mutation_p.P508L|MECOM_uc003ffk.2_Missense_Mutation_p.P508L|MECOM_uc003ffl.2_Missense_Mutation_p.P668L|MECOM_uc011bpj.1_Missense_Mutation_p.P696L|MECOM_uc011bpk.1_Missense_Mutation_p.P498L|MECOM_uc010hwn.2_Missense_Mutation_p.P696L	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	508					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						AAATGGGAGGGGAAACATGGA	0.423													21	102					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168833838	168833838	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168833838C>T	uc003ffi.3	-	7	1527	c.1258G>A	c.(1258-1260)GAT>AAT	p.D420N	MECOM_uc010hwk.1_Missense_Mutation_p.D443N|MECOM_uc003ffj.3_Missense_Mutation_p.D485N|MECOM_uc011bpi.1_Missense_Mutation_p.D421N|MECOM_uc003ffn.3_Missense_Mutation_p.D420N|MECOM_uc003ffk.2_Missense_Mutation_p.D420N|MECOM_uc003ffl.2_Missense_Mutation_p.D580N|MECOM_uc011bpj.1_Missense_Mutation_p.D608N|MECOM_uc011bpk.1_Missense_Mutation_p.D410N|MECOM_uc010hwn.2_Missense_Mutation_p.D608N	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	420					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TTCTCTTTATCACTTTCAATG	0.383													17	76					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168838897	168838897	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168838897G>A	uc003ffi.3	-	6	784	c.515C>T	c.(514-516)TCG>TTG	p.S172L	MECOM_uc010hwk.1_Missense_Mutation_p.S195L|MECOM_uc003ffj.3_Missense_Mutation_p.S237L|MECOM_uc011bpi.1_Missense_Mutation_p.S173L|MECOM_uc003ffn.3_Missense_Mutation_p.S172L|MECOM_uc003ffk.2_Missense_Mutation_p.S172L|MECOM_uc003ffl.2_Missense_Mutation_p.S332L|MECOM_uc011bpj.1_Missense_Mutation_p.S360L|MECOM_uc011bpk.1_Missense_Mutation_p.S162L|MECOM_uc010hwn.2_Missense_Mutation_p.S360L	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	172	C2H2-type 5.|Interaction with MAPK9, SMAD3 and probably SUV39H1.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GAGGCCCGACGAAGTGGCAAA	0.552													13	59					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	168845770	168845770	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:168845770G>A	uc003ffi.3	-	4	397	c.128C>T	c.(127-129)CCA>CTA	p.P43L	MECOM_uc010hwk.1_Missense_Mutation_p.P66L|MECOM_uc003ffj.3_Missense_Mutation_p.P107L|MECOM_uc011bpi.1_Missense_Mutation_p.P43L|MECOM_uc003ffn.3_Missense_Mutation_p.P43L|MECOM_uc003ffk.2_Missense_Mutation_p.P43L|MECOM_uc003ffl.2_Missense_Mutation_p.P203L|MECOM_uc011bpj.1_Missense_Mutation_p.P231L|MECOM_uc011bpk.1_Missense_Mutation_p.P33L|MECOM_uc010hwn.2_Missense_Mutation_p.P231L|MECOM_uc003ffm.1_Missense_Mutation_p.P107L	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	43	C2H2-type 1.|Interaction with MAPK9, SMAD3 and probably SUV39H1.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						AGTACTGCATGGAAACTTTTG	0.438													59	147					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169539831	169539831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169539831C>T	uc003fgb.2	+	1	122	c.122C>T	c.(121-123)CCT>CTT	p.P41L		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	41	LRR 1.										0						ACTGCCATTCCTTTGGAGATC	0.383													35	84					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169539934	169539934	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169539934C>T	uc003fgb.2	+	1	225	c.225C>T	c.(223-225)GTC>GTT	p.V75V		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	75	LRR 3.										0						ACATCAGGGTCCTCTACCTGG	0.502													40	82					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169539941	169539941	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169539941C>T	uc003fgb.2	+	1	232	c.232C>T	c.(232-234)CTG>TTG	p.L78L		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	78	LRR 3.										0						GGTCCTCTACCTGGATAAGAA	0.512													43	93					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540207	169540207	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169540207G>A	uc003fgb.2	+	1	498	c.498G>A	c.(496-498)AAG>AAA	p.K166K		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	166	LRR 7.										0						ACCAGACCAAGCTGAGGGAGA	0.493													13	98					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540249	169540249	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169540249C>T	uc003fgb.2	+	1	540	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	180	LRR 7.										0						TTGAAGTTTTCCCCCAGGAGC	0.517													34	86					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540351	169540351	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169540351G>A	uc003fgb.2	+	1	642	c.642G>A	c.(640-642)CAG>CAA	p.Q214Q		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	214	LRR 9.										0						CGGGGCTGCAGAAGTTCTATA	0.532													44	93					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169548310	169548310	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169548310C>T	uc003fgb.2	+	3	1225	c.1225C>T	c.(1225-1227)CAT>TAT	p.H409Y		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	409	LRR 17.										0						AGAGAACAATCATCTGGAGTA	0.383													4	15					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169550939	169550939	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169550939G>A	uc003fgb.2	+	4	1498	c.1498G>A	c.(1498-1500)GAA>AAA	p.E500K		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	500											0						ATACCTCAAGGAAAACAGAAA	0.408													12	29					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644414	169644414	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169644414C>T	uc003fgd.2	+	6	631	c.364C>T	c.(364-366)CTA>TTA	p.L122L	SAMD7_uc003fge.2_Silent_p.L122L|SAMD7_uc011bpo.1_Silent_p.L23L	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	122										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			ACTAGCAGGCCTAGGGATACC	0.468													35	68					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644428	169644428	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169644428C>T	uc003fgd.2	+	6	645	c.378C>T	c.(376-378)TTC>TTT	p.F126F	SAMD7_uc003fge.2_Silent_p.F126F|SAMD7_uc011bpo.1_Silent_p.F27F	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	126										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GGATACCCTTCCTCTATGGCT	0.502													32	76					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644533	169644533	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169644533G>A	uc003fgd.2	+	6	750	c.483G>A	c.(481-483)CAG>CAA	p.Q161Q	SAMD7_uc003fge.2_Silent_p.Q161Q|SAMD7_uc011bpo.1_Silent_p.Q62Q	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	161										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GAAACCTTCAGGGAAACCCCA	0.562													49	83					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644608	169644608	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169644608A>T	uc003fgd.2	+	6	825	c.558A>T	c.(556-558)AAA>AAT	p.K186N	SAMD7_uc003fge.2_Missense_Mutation_p.K186N|SAMD7_uc011bpo.1_Missense_Mutation_p.K87N	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	186										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GACTCAGGAAAAATACAGGGA	0.483													29	74					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169656228	169656228	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169656228G>A	uc003fgd.2	+	9	1542	c.1275G>A	c.(1273-1275)ATG>ATA	p.M425I	SAMD7_uc003fge.2_Missense_Mutation_p.M425I|SAMD7_uc011bpo.1_Missense_Mutation_p.M326I	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	425										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GTGATACAATGAACATTTTTT	0.388													21	40					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169656259	169656259	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169656259C>T	uc003fgd.2	+	9	1573	c.1306C>T	c.(1306-1308)CCT>TCT	p.P436S	SAMD7_uc003fge.2_Missense_Mutation_p.P436S|SAMD7_uc011bpo.1_Missense_Mutation_p.P337S	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	436										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			TACAATAATTCCTAAAGGAAT	0.398													9	32					0	0	1	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169663602	169663602	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169663602G>A	uc011bpp.1	-	2		c.4201C>T				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						AGAGGGGAAAGACCACTCTTC	0.423													5	16					0	0	1	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169663684	169663684	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169663684G>A	uc011bpp.1	-	2		c.4119C>T				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						CAGGGCAGGAGCCCCTGTCAG	0.443													13	92					0	0	1	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169663768	169663768	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169663768C>T	uc011bpp.1	-	2		c.4035G>A				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						TGGCCAGATTCACAGAGCATT	0.498													12	152					0	0	1	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169663986	169663986	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169663986C>T	uc011bpp.1	-	2		c.3817G>A				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						CATACAAAGCCCTCGGCATGC	0.498													9	110					0	0	1	0	0
PHC3	80012	broad.mit.edu	37	3	169863233	169863233	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:169863233G>A	uc010hws.1	-	6	678	c.614C>T	c.(613-615)TCC>TTC	p.S205F	PHC3_uc003fgl.2_Missense_Mutation_p.S217F|PHC3_uc011bpq.1_Missense_Mutation_p.S164F|PHC3_uc011bpr.1_Intron|PHC3_uc003fgm.2_Missense_Mutation_p.S217F	NM_024947	NP_079223	Q8NDX5	PHC3_HUMAN	polyhomeotic like 3	205	Ser-rich.				multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(22;2.67e-22)|all_epithelial(15;4.73e-27)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			AGACTGACAGGAAGATGACGA	0.433													13	50					0	0	1	0	0
PRKCI	5584	broad.mit.edu	37	3	170020883	170020883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:170020883C>T	uc003fgs.2	+	18	1997	c.1759C>T	c.(1759-1761)CCT>TCT	p.P587S	PRKCI_uc003fgt.2_Missense_Mutation_p.P142S	NM_002740	NP_002731	P41743	KPCI_HUMAN	protein kinase C, iota	587	AGC-kinase C-terminal.				anti-apoptosis|cellular membrane organization|cellular response to insulin stimulus|establishment or maintenance of epithelial cell apical/basal polarity|intracellular signal transduction|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|protein targeting to membrane|secretion|tight junction assembly|vesicle-mediated transport	cytosol|endosome|nucleus|polarisome	ATP binding|phospholipid binding|protein binding|protein kinase C activity|zinc ion binding			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(22;6.45e-23)|all_epithelial(15;8.52e-28)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			GTATATCAATCCTCTTTTGAT	0.333													33	81					0	0	1	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198469	170198469	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:170198469C>T	uc003fgz.2	-	7	1918	c.1602G>A	c.(1600-1602)AAG>AAA	p.K534K	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	534						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			CAATCAGCTTCTTTAACTTGA	0.507													39	100					0	0	1	0	0
SLC7A14	57709	broad.mit.edu	37	3	170244629	170244629	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:170244629C>T	uc003fgz.2	-	2	413	c.97G>A	c.(97-99)GAG>AAG	p.E33K	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	33						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			AGCATGGACTCCACTGGTTTG	0.592													4	29					0	0	1	0	0
SLC2A2	6514	broad.mit.edu	37	3	170715801	170715801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:170715801C>T	uc003fhe.1	-	11	1775	c.1466G>A	c.(1465-1467)GGA>GAA	p.G489E	SLC2A2_uc003fhf.1_Missense_Mutation_p.G316E|SLC2A2_uc011bpu.1_Missense_Mutation_p.G362E	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	489	Cytoplasmic (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			AAAAGACTTTCCTTTGGTTTC	0.438													8	133					0	0	1	0	0
SLC2A2	6514	broad.mit.edu	37	3	170716065	170716065	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:170716065G>A	uc003fhe.1	-	10	1600	c.1291C>T	c.(1291-1293)CCA>TCA	p.P431S	SLC2A2_uc003fhf.1_Missense_Mutation_p.P258S|SLC2A2_uc011bpu.1_Missense_Mutation_p.P304S	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	431	Cytoplasmic (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			GCAGGACGTGGTCCTTGACTG	0.463													24	75					0	0	1	0	0
SLC2A2	6514	broad.mit.edu	37	3	170720368	170720368	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:170720368G>A	uc003fhe.1	-	8	1374	c.1065C>T	c.(1063-1065)GTC>GTT	p.V355V	SLC2A2_uc003fhf.1_Silent_p.V182V|SLC2A2_uc011bpu.1_Silent_p.V228V	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	355	Helical; Name=8; (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			GACTTACAGAGACAGCAGTGA	0.428													12	32					0	0	1	0	0
TNIK	23043	broad.mit.edu	37	3	170805228	170805228	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:170805228G>A	uc003fhh.2	-	24	3134	c.2789C>T	c.(2788-2790)CCT>CTT	p.P930L	TNIK_uc003fhi.2_Missense_Mutation_p.P875L|TNIK_uc003fhj.2_Missense_Mutation_p.P901L|TNIK_uc003fhk.2_Missense_Mutation_p.P922L|TNIK_uc003fhl.2_Missense_Mutation_p.P846L|TNIK_uc003fhm.2_Missense_Mutation_p.P867L|TNIK_uc003fhn.2_Missense_Mutation_p.P893L|TNIK_uc003fho.2_Missense_Mutation_p.P838L|TNIK_uc003fhg.2_Missense_Mutation_p.P108L	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	930	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CACCAGGTCAGGGAGGTTGAT	0.587													28	82					0	0	1	0	0
TNIK	23043	broad.mit.edu	37	3	170805230	170805230	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:170805230G>A	uc003fhh.2	-	24	3132	c.2787C>T	c.(2785-2787)CTC>CTT	p.L929L	TNIK_uc003fhi.2_Silent_p.L874L|TNIK_uc003fhj.2_Silent_p.L900L|TNIK_uc003fhk.2_Silent_p.L921L|TNIK_uc003fhl.2_Silent_p.L845L|TNIK_uc003fhm.2_Silent_p.L866L|TNIK_uc003fhn.2_Silent_p.L892L|TNIK_uc003fho.2_Silent_p.L837L|TNIK_uc003fhg.2_Silent_p.L107L	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	929	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CCAGGTCAGGGAGGTTGATGT	0.592													26	83					0	0	1	0	0
TNIK	23043	broad.mit.edu	37	3	170819401	170819401	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:170819401C>T	uc003fhh.2	-	22	2773	c.2428G>A	c.(2428-2430)GAA>AAA	p.E810K	TNIK_uc003fhi.2_Missense_Mutation_p.E755K|TNIK_uc003fhj.2_Missense_Mutation_p.E781K|TNIK_uc003fhk.2_Missense_Mutation_p.E802K|TNIK_uc003fhl.2_Missense_Mutation_p.E726K|TNIK_uc003fhm.2_Missense_Mutation_p.E747K|TNIK_uc003fhn.2_Missense_Mutation_p.E773K|TNIK_uc003fho.2_Missense_Mutation_p.E718K|TNIK_uc003fhg.2_5'UTR	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	810	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			TCTCTTAGTTCTTTGGCTAAT	0.453													25	66					0	0	1	0	0
PLD1	5337	broad.mit.edu	37	3	171406482	171406482	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:171406482G>A	uc003fhs.2	-	14	1639	c.1523C>T	c.(1522-1524)TCT>TTT	p.S508F	PLD1_uc003fht.2_Missense_Mutation_p.S508F	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	508	Catalytic.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	GGAACCCAGAGACGGTCCTGA	0.453													9	82					0	0	1	0	0
FNDC3B	64778	broad.mit.edu	37	3	172025193	172025193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172025193G>A	uc003fhy.2	+	10	1274	c.1102G>A	c.(1102-1104)GAG>AAG	p.E368K	FNDC3B_uc003fhz.3_Missense_Mutation_p.E368K|FNDC3B_uc003fia.2_Missense_Mutation_p.E299K	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	368	Fibronectin type-III 1.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		ATCCTGCTCCGAGCCTGTTAG	0.502													30	89					0	0	1	0	0
GHSR	2693	broad.mit.edu	37	3	172163094	172163094	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172163094G>A	uc003fib.1	-	2	958	c.958C>T	c.(958-960)CCC>TCC	p.P320S		NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	320	Helical; Name=7; (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			TACAGAATGGGGTTGATGGCA	0.502													35	103					0	0	1	0	0
GHSR	2693	broad.mit.edu	37	3	172165491	172165491	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172165491T>C	uc003fib.1	-	1	713	c.713A>G	c.(712-714)AAG>AGG	p.K238R	GHSR_uc011bpv.1_Missense_Mutation_p.K238R	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	238	Cytoplasmic (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CCGCCACAGCTTCCTGCCGAT	0.607													17	42					0	0	1	0	0
GHSR	2693	broad.mit.edu	37	3	172165667	172165667	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172165667G>A	uc003fib.1	-	1	537	c.537C>T	c.(535-537)TTC>TTT	p.F179F	GHSR_uc011bpv.1_Silent_p.F179F	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	179	Helical; Name=4; (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CGACTAGCACGAAGATGGGCC	0.662													22	51					0	0	1	0	0
GHSR	2693	broad.mit.edu	37	3	172165791	172165791	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172165791C>T	uc003fib.1	-	1	413	c.413G>A	c.(412-414)AGC>AAC	p.S138N	GHSR_uc011bpv.1_Missense_Mutation_p.S138N	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	138	Helical; Name=3; (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			GCGCTCGACGCTCAGCGCTGT	0.622													8	28					0	0	1	0	0
GHSR	2693	broad.mit.edu	37	3	172165867	172165867	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172165867C>T	uc003fib.1	-	1	337	c.337G>A	c.(337-339)GAC>AAC	p.D113N	GHSR_uc011bpv.1_Missense_Mutation_p.D113N	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	113	Extracellular (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CAGAGGAGGTCGCCGAAGTTC	0.602													13	33					0	0	1	0	0
TNFSF10	8743	broad.mit.edu	37	3	172241118	172241118	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172241118G>A	uc003fid.2	-	1	152	c.57C>T	c.(55-57)ATC>ATT	p.I19I	TNFSF10_uc003fie.2_Silent_p.I19I|TNFSF10_uc010hwu.1_RNA	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	19	Helical; Signal-anchor for type II membrane protein; (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding			skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			TGAAGATCACGATCAGCACGC	0.562													29	81					0	0	1	0	0
NCEH1	57552	broad.mit.edu	37	3	172428810	172428810	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172428810G>A	uc011bpx.1	-	1	199	c.61C>T	c.(61-63)CTT>TTT	p.L21F	NCEH1_uc003fig.2_Missense_Mutation_p.L21F|NCEH1_uc011bpw.1_5'UTR|NCEH1_uc011bpy.1_5'UTR	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	Error:Variant_position_missing_in_Q6PIU2_after_alignment					lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						GGCTGGCAAAGAGGAAAGGGC	0.627											OREG0015927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	64					0	0	1	0	0
ECT2	1894	broad.mit.edu	37	3	172479429	172479429	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172479429G>A	uc003fii.2	+	7	759	c.621G>A	c.(619-621)ATG>ATA	p.M207I	ECT2_uc010hwv.1_Missense_Mutation_p.M238I|ECT2_uc003fih.2_Missense_Mutation_p.M206I|ECT2_uc003fij.1_Missense_Mutation_p.M207I|ECT2_uc003fik.1_Missense_Mutation_p.M207I|ECT2_uc003fil.1_Missense_Mutation_p.M238I	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	207	BRCT 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			CTCCAATTATGAAGCCAGAAT	0.323													38	93					0	0	1	0	0
SPATA16	83893	broad.mit.edu	37	3	172737294	172737294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172737294C>T	uc003fin.3	-	4	988	c.830G>A	c.(829-831)AGG>AAG	p.R277K		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	277					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CTCTGAATACCTCTCCAGACA	0.348													37	163					0	0	1	0	0
SPATA16	83893	broad.mit.edu	37	3	172766859	172766859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172766859C>T	uc003fin.3	-	3	796	c.638G>A	c.(637-639)GGA>GAA	p.G213E		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	213					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			AAATGGTTCTCCCAGAACTGC	0.348													12	38					0	0	1	0	0
SPATA16	83893	broad.mit.edu	37	3	172834990	172834990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:172834990C>T	uc003fin.3	-	2	690	c.532G>A	c.(532-534)GTA>ATA	p.V178I		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	178					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TTTAAGGCTACCTGAAGCCAT	0.438													19	162					0	0	1	0	0
NLGN1	22871	broad.mit.edu	37	3	173322869	173322869	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:173322869C>T	uc003fio.1	+	3	904	c.481C>T	c.(481-483)CCG>TCG	p.P161S	NLGN1_uc010hww.1_Missense_Mutation_p.P161S|NLGN1_uc003fip.1_Missense_Mutation_p.P161S	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	161	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			TATATATGTCCCGACTGAGGA	0.338													8	127					0	0	1	0	0
NAALADL2	254827	broad.mit.edu	37	3	174951855	174951855	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:174951855C>T	uc003fit.2	+	3	767	c.680C>T	c.(679-681)TCT>TTT	p.S227F	NAALADL2_uc003fiu.1_Missense_Mutation_p.S220F|NAALADL2_uc010hwy.1_Missense_Mutation_p.S49F	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	227	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		CCAGGCCCTTCTCCCAGCACT	0.473													40	69					0	0	1	0	0
NAALADL2	254827	broad.mit.edu	37	3	175041968	175041968	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:175041968C>T	uc003fit.2	+	5	1031	c.944C>T	c.(943-945)TCC>TTC	p.S315F	NAALADL2_uc003fiu.1_Missense_Mutation_p.S308F|NAALADL2_uc010hwy.1_Missense_Mutation_p.S137F|NAALADL2_uc010hwz.1_Intron	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	315	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		TTTTAGCTTTCCTCATTGGAA	0.378													43	262					0	0	1	0	0
NAALADL2	254827	broad.mit.edu	37	3	175184890	175184890	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:175184890G>A	uc003fit.2	+	8	1538	c.1451G>A	c.(1450-1452)GGG>GAG	p.G484E	NAALADL2_uc003fiu.1_Missense_Mutation_p.G477E|NAALADL2_uc010hwy.1_Missense_Mutation_p.G258E|NAALADL2_uc010hwz.1_Missense_Mutation_p.G78E	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	484	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		GTTAAGAGAGGGTGGAGACCA	0.423													39	102					0	0	1	0	0
TBL1XR1	79718	broad.mit.edu	37	3	176768298	176768298	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:176768298G>A	uc003fiw.3	-	6	788	c.528C>T	c.(526-528)GCC>GCT	p.A176A	TBL1XR1_uc003fix.3_Silent_p.A176A|TBL1XR1_uc011bpz.1_Intron	NM_024665	NP_078941	Q9BZK7	TBL1R_HUMAN	transducin (beta)-like 1 X-linked receptor 1	176	WD 1.				canonical Wnt receptor signaling pathway|cellular lipid metabolic process|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein N-terminus binding|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(143;1.44e-17)|Ovarian(172;0.00163)|Breast(254;0.214)	Acute lymphoblastic leukemia(1;0.00599)|all_hematologic(1;0.0632)|Prostate(884;0.215)	OV - Ovarian serous cystadenocarcinoma(80;9.83e-31)			CAGGGTTCCAGGCACAGATAA	0.363													8	28					0	0	1	0	0
PIK3CA	5290	broad.mit.edu	37	3	178942511	178942511	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:178942511C>T	uc003fjk.2	+	16	2475	c.2318C>T	c.(2317-2319)TCC>TTC	p.S773F		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	773					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			CGAATTATGTCCTCTGCAAAA	0.328		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			31	95					0	0	1	0	0
PEX5L	51555	broad.mit.edu	37	3	179525581	179525581	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:179525581C>T	uc003fki.1	-	14	1687	c.1557G>A	c.(1555-1557)GCG>GCA	p.A519A	PEX5L_uc011bqd.1_Silent_p.A476A|PEX5L_uc011bqe.1_Silent_p.A327A|PEX5L_uc011bqf.1_Silent_p.A411A|PEX5L_uc003fkj.1_Silent_p.A484A|PEX5L_uc010hxd.1_Silent_p.A517A|PEX5L_uc011bqg.1_Silent_p.A495A|PEX5L_uc011bqh.1_Silent_p.A460A	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	519	TPR 4.				protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			GGTCTCCGTTCGCCAAGGTCG	0.527													14	202					0	0	1	0	0
PEX5L	51555	broad.mit.edu	37	3	179526210	179526210	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:179526210C>T	uc003fki.1	-	13	1498	c.1368G>A	c.(1366-1368)GGG>GGA	p.G456G	PEX5L_uc011bqd.1_Silent_p.G413G|PEX5L_uc011bqe.1_Silent_p.G264G|PEX5L_uc011bqf.1_Silent_p.G348G|PEX5L_uc003fkj.1_Silent_p.G421G|PEX5L_uc010hxd.1_Silent_p.G454G|PEX5L_uc011bqg.1_Silent_p.G432G|PEX5L_uc011bqh.1_Silent_p.G397G	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	456					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			ATTCCTTCACCCCTTCCAGAA	0.398													33	81					0	0	1	0	0
PEX5L	51555	broad.mit.edu	37	3	179597799	179597800	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:179597799_179597800GG>AA	uc003fki.1	-	5	552_553	c.422_423CC>TT	c.(421-423)GCC>GTT	p.A141V	PEX5L_uc011bqd.1_Missense_Mutation_p.A98V|PEX5L_uc011bqe.1_5'UTR|PEX5L_uc011bqf.1_Intron|PEX5L_uc003fkj.1_Missense_Mutation_p.A106V|PEX5L_uc010hxd.1_Missense_Mutation_p.A139V|PEX5L_uc011bqg.1_Missense_Mutation_p.A117V|PEX5L_uc011bqh.1_Missense_Mutation_p.A82V	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	141					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			CAGATCCATCGGCCTTTTTCTT	0.52													19	74					0	0	1	0	0
CCDC39	339829	broad.mit.edu	37	3	180359940	180359940	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:180359940C>T	uc010hxe.2	-	13	1830	c.1715G>A	c.(1714-1716)CGA>CAA	p.R572Q	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	572	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			AAGCATTTCTCGAGTACGCTT	0.323													10	24					0	0	1	0	0
CCDC39	339829	broad.mit.edu	37	3	180365995	180365995	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:180365995C>T	uc010hxe.2	-	10	1435	c.1320G>A	c.(1318-1320)CTG>CTA	p.L440L	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	440	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			TTTCAAAATCCAGTTTTTGTA	0.343													13	46					0	0	1	0	0
CCDC39	339829	broad.mit.edu	37	3	180372697	180372697	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:180372697C>T	uc010hxe.2	-	7	898	c.783G>A	c.(781-783)TTG>TTA	p.L261L	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	261	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			TTTCTTTAACCAAATTTTCTT	0.284													7	23					0	0	1	0	0
CCDC39	339829	broad.mit.edu	37	3	180381713	180381713	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:180381713C>T	uc010hxe.2	-	2	267	c.152G>A	c.(151-153)CGA>CAA	p.R51Q	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	51	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			AGAATTAATTCGCTCTTCATA	0.328													30	83					0	0	1	0	0
ATP11B	23200	broad.mit.edu	37	3	182563248	182563248	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:182563248C>T	uc003flb.2	+	9	964	c.707C>T	c.(706-708)CCT>CTT	p.P236L		NM_014616	NP_055431	Q9Y2G3	AT11B_HUMAN	ATPase, class VI, type 11B	236	Cytoplasmic (Potential).				aminophospholipid transport|ATP biosynthetic process	integral to membrane|nuclear inner membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;1.2e-42)|Epithelial(37;2.77e-36)|LUSC - Lung squamous cell carcinoma(7;7.58e-24)|Lung(8;4.66e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.35e-20)			TTTCCTAGACCTCTGGGGCCG	0.333													9	44					0	0	1	0	0
ATP11B	23200	broad.mit.edu	37	3	182597411	182597411	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:182597411C>T	uc003flb.2	+	20	2637	c.2380C>T	c.(2380-2382)CGT>TGT	p.R794C	ATP11B_uc003flc.2_Missense_Mutation_p.R378C|ATP11B_uc011bqm.1_Missense_Mutation_p.R98C|ATP11B_uc010hxf.1_5'UTR	NM_014616	NP_055431	Q9Y2G3	AT11B_HUMAN	ATPase, class VI, type 11B	794	Cytoplasmic (Potential).				aminophospholipid transport|ATP biosynthetic process	integral to membrane|nuclear inner membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;1.2e-42)|Epithelial(37;2.77e-36)|LUSC - Lung squamous cell carcinoma(7;7.58e-24)|Lung(8;4.66e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.35e-20)			ATTATGCTGTCGTATGGCTCC	0.358													17	104					0	0	1	0	0
MCCC1	56922	broad.mit.edu	37	3	182755102	182755102	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:182755102G>A	uc003fle.2	-	13	1635	c.1498C>T	c.(1498-1500)CGG>TGG	p.R500W	MCCC1_uc010hxi.2_Intron|MCCC1_uc011bqo.1_RNA|MCCC1_uc003flf.2_Missense_Mutation_p.R383W|MCCC1_uc003flg.2_Missense_Mutation_p.R391W|MCCC1_uc011bqp.1_Missense_Mutation_p.R453W	NM_020166	NP_064551	Q96RQ3	MCCA_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	500					biotin metabolic process|leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.84e-14)|Ovarian(172;0.0355)		all cancers(12;1.8e-44)|Epithelial(37;3.23e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;5.07e-21)		Biotin(DB00121)	GCAGCCTTCCGACTGAGCAAC	0.507													6	80					0	0	1	0	0
MCCC1	56922	broad.mit.edu	37	3	182763211	182763211	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:182763211C>T	uc003fle.2	-	10	1210	c.1073G>A	c.(1072-1074)TGG>TAG	p.W358*	MCCC1_uc010hxi.2_RNA|MCCC1_uc011bqo.1_RNA|MCCC1_uc003flf.2_Nonsense_Mutation_p.W241*|MCCC1_uc003flg.2_Nonsense_Mutation_p.W249*|MCCC1_uc011bqp.1_Nonsense_Mutation_p.W311*|MCCC1_uc011bqq.1_Nonsense_Mutation_p.W249*	NM_020166	NP_064551	Q96RQ3	MCCA_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	358	Biotin carboxylation.|ATP-grasp.				biotin metabolic process|leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.84e-14)|Ovarian(172;0.0355)		all cancers(12;1.8e-44)|Epithelial(37;3.23e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;5.07e-21)		Biotin(DB00121)	TCTAAGCTGCCACTCCACCAA	0.274													27	82					0	0	1	0	0
LAMP3	27074	broad.mit.edu	37	3	182841908	182841908	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:182841908G>A	uc003flh.3	-	6	1436	c.1212C>T	c.(1210-1212)ATC>ATT	p.I404I		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	404	Cytoplasmic (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			ACCTTAGGCGGATTTTATAGA	0.453													49	147					0	0	1	0	0
B3GNT5	84002	broad.mit.edu	37	3	182988250	182988250	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:182988250C>T	uc003flk.2	+	2	1194	c.664C>T	c.(664-666)CGT>TGT	p.R222C	MCF2L2_uc003fli.1_Intron|MCF2L2_uc003flj.1_Intron|MCF2L2_uc011bqr.1_Intron|B3GNT5_uc003fll.2_Missense_Mutation_p.R222C|B3GNT5_uc003flm.2_Missense_Mutation_p.R222C	NM_032047	NP_114436	Q9BYG0	B3GN5_HUMAN	UDP-GlcNAc:betaGal	222	Lumenal (Potential).				central nervous system development|glycolipid biosynthetic process|protein glycosylation	Golgi membrane|integral to membrane	beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity|galactosyltransferase activity			ovary(1)	1	all_cancers(143;8.52e-13)|Ovarian(172;0.0355)		all cancers(12;4.52e-44)|Epithelial(37;8.82e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			TTGGATTGGTCGTGTTCATCG	0.423													64	165					0	0	1	0	0
MCF2L2	23101	broad.mit.edu	37	3	182994669	182994669	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:182994669G>A	uc003fli.1	-	15	1943	c.1853C>T	c.(1852-1854)TCC>TTC	p.S618F	MCF2L2_uc003flj.1_Missense_Mutation_p.S618F|MCF2L2_uc011bqr.1_RNA	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	618					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			CCTGCGGGGGGAAAGGTCTCC	0.557													8	15					0	0	1	0	0
MCF2L2	23101	broad.mit.edu	37	3	183014925	183014925	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183014925G>A	uc003fli.1	-	12	1426	c.1336C>T	c.(1336-1338)CTC>TTC	p.L446F	MCF2L2_uc003flj.1_Missense_Mutation_p.L446F|MCF2L2_uc011bqr.1_Intron|uc003fln.1_RNA|uc003flo.2_5'Flank	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	446					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			GAAGCCAAGAGGTAGATTCCT	0.532													12	64					0	0	1	0	0
MCF2L2	23101	broad.mit.edu	37	3	183097158	183097158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183097158C>T	uc003fli.1	-	3	292	c.202G>A	c.(202-204)GAG>AAG	p.E68K	MCF2L2_uc003flj.1_Missense_Mutation_p.E68K|MCF2L2_uc003flp.1_Missense_Mutation_p.E103K	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	68	CRAL-TRIO.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			CCCGAAAACTCTGGGAACGTG	0.532													12	26					0	0	1	0	0
MCF2L2	23101	broad.mit.edu	37	3	183107490	183107490	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183107490G>A	uc003fli.1	-	2	244	c.154C>T	c.(154-156)CTT>TTT	p.L52F	MCF2L2_uc003flj.1_Missense_Mutation_p.L52F|MCF2L2_uc003flp.1_Missense_Mutation_p.L87F	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	52	CRAL-TRIO.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			TTACCTGAAAGAATGGCAAAT	0.433													13	60					0	0	1	0	0
KLHL6	89857	broad.mit.edu	37	3	183209732	183209732	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183209732C>T	uc003flr.2	-	7	1907	c.1849G>A	c.(1849-1851)GGA>AGA	p.G617R	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_3'UTR|KLHL6_uc010hxk.1_RNA	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	617										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GACACTGCTCCGGGCACGATC	0.662													13	54					0	0	1	0	0
KLHL6	89857	broad.mit.edu	37	3	183211937	183211938	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183211937_183211938CC>TT	uc003flr.2	-	5	1337_1338	c.1279_1280GG>AA	c.(1279-1281)GGA>AAA	p.G427K	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_3'UTR|KLHL6_uc010hxk.1_RNA	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	427	Kelch 3.									haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GTCAAAGCCTCCGATCACATAG	0.455													41	139					0	0	1	0	0
KLHL6	89857	broad.mit.edu	37	3	183226214	183226214	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183226214G>A	uc003flr.2	-	3	600	c.542C>T	c.(541-543)GCT>GTT	p.A181V	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Missense_Mutation_p.A179V	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	181	BACK.									haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GTGTGTGTCAGCCAGCCTCAG	0.388													31	85					0	0	1	0	0
KLHL24	54800	broad.mit.edu	37	3	183381334	183381334	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183381334C>T	uc003flv.2	+	4	1304	c.1009C>T	c.(1009-1011)CCT>TCT	p.P337S	KLHL24_uc003flw.2_Missense_Mutation_p.P337S|KLHL24_uc003flx.2_Missense_Mutation_p.P337S	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	337	Kelch 1.					axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			GTGCTACGATCCTGTAACAGG	0.413													41	121					0	0	1	0	0
YEATS2	55689	broad.mit.edu	37	3	183446550	183446550	+	Silent	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183446550C>G	uc003fly.2	+	7	918	c.723C>G	c.(721-723)TCC>TCG	p.S241S		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	241	YEATS.				histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TCCGAGGGTCCCGTAGAGAAC	0.413													10	85					0	0	1	0	0
YEATS2	55689	broad.mit.edu	37	3	183521816	183521816	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183521816C>T	uc003fly.2	+	27	3819	c.3624C>T	c.(3622-3624)ATC>ATT	p.I1208I	uc003fma.1_3'UTR	NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	1208					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TACAAGAAATCCTGGAGAAGA	0.443													56	92					0	0	1	0	0
ABCC5	10057	broad.mit.edu	37	3	183655757	183655757	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183655757G>A	uc003fmg.2	-	26	3951	c.3786C>T	c.(3784-3786)GGC>GGT	p.G1262G	ABCC5_uc011bqt.1_Silent_p.G790G|ABCC5_uc010hxl.2_Silent_p.G1219G	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	1262	ABC transporter 2.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GGTCGGCAAGGCCAATATCAC	0.547													34	75					0	0	1	0	0
HTR3D	200909	broad.mit.edu	37	3	183756207	183756207	+	Silent	SNP	C	T	T	rs139778852		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183756207C>T	uc011bqv.1	+	7	930	c.930C>T	c.(928-930)TTC>TTT	p.F310F	HTR3D_uc003fmj.2_Silent_p.F135F|HTR3D_uc011bqu.1_Silent_p.F260F|HTR3D_uc010hxp.2_Silent_p.F89F	NM_001163646	NP_001157118	Q70Z44	5HT3D_HUMAN	5-hydroxytryptamine receptor 3 subunit D isoform	310	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	extracellular ligand-gated ion channel activity|receptor activity				0	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;6.23e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GTGTCTACTTCGCCCTGTGCC	0.587													29	77					0	0	1	0	0
HTR3D	200909	broad.mit.edu	37	3	183756736	183756736	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183756736C>T	uc011bqv.1	+	8	1338	c.1338C>T	c.(1336-1338)ATC>ATT	p.I446I	HTR3D_uc003fmj.2_Silent_p.I271I|HTR3D_uc011bqu.1_Silent_p.I396I|HTR3D_uc010hxp.2_Silent_p.I225I	NM_001163646	NP_001157118	Q70Z44	5HT3D_HUMAN	5-hydroxytryptamine receptor 3 subunit D isoform	446	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	extracellular ligand-gated ion channel activity|receptor activity				0	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;6.23e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CCTCCATCATCACCGTCATAT	0.567													32	126					0	0	1	0	0
HTR3C	170572	broad.mit.edu	37	3	183774774	183774774	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183774774C>T	uc003fmk.2	+	5	535	c.501C>T	c.(499-501)TTC>TTT	p.F167F		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	167	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			TGGACATCTTCTACTTCCCTT	0.443													18	271					0	0	1	0	0
HTR3C	170572	broad.mit.edu	37	3	183777626	183777626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183777626C>T	uc003fmk.2	+	8	970	c.936C>T	c.(934-936)TTC>TTT	p.F312F		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	312	Helical; Name=3; (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GTGTCTACTTCGCCCTGTGCC	0.517													9	114					0	0	1	0	0
HTR3C	170572	broad.mit.edu	37	3	183777966	183777966	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183777966G>A	uc003fmk.2	+	9	1204	c.1170G>A	c.(1168-1170)GGG>GGA	p.G390G		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	390	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			AGTTAGCAGGGAAGAAGCTGG	0.607													13	36					0	0	1	0	0
HTR3C	170572	broad.mit.edu	37	3	183778095	183778095	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183778095C>T	uc003fmk.2	+	9	1333	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	433	Helical; Name=4; (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			ACCTGCTCTTCATGGCCTCCT	0.567													66	175					0	0	1	0	0
HTR3E	285242	broad.mit.edu	37	3	183822058	183822058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183822058C>T	uc010hxq.2	+	4	834	c.368C>T	c.(367-369)CCA>CTA	p.P123L	HTR3E_uc003fml.3_Missense_Mutation_p.P108L|HTR3E_uc003fmm.2_Missense_Mutation_p.P138L|HTR3E_uc010hxr.2_Missense_Mutation_p.P123L|HTR3E_uc003fmn.2_Missense_Mutation_p.P123L	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	123	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CTGTGGCTCCCAGACATTTTC	0.517													8	20					0	0	1	0	0
HTR3E	285242	broad.mit.edu	37	3	183823084	183823084	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183823084G>A	uc010hxq.2	+	6	1055	c.589G>A	c.(589-591)GAA>AAA	p.E197K	HTR3E_uc003fml.3_Missense_Mutation_p.E182K|HTR3E_uc003fmm.2_Missense_Mutation_p.E212K|HTR3E_uc010hxr.2_Missense_Mutation_p.E223K|HTR3E_uc003fmn.2_Missense_Mutation_p.E197K	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	197	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CATGGAGAAAGAAGTGTGGGA	0.498													16	46					0	0	1	0	0
DVL3	1857	broad.mit.edu	37	3	183888410	183888410	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183888410C>T	uc003fms.2	+	15	2158	c.2018C>T	c.(2017-2019)CCC>CTC	p.P673L	DVL3_uc011bqw.1_Missense_Mutation_p.P656L|DVL3_uc003fmt.2_Missense_Mutation_p.P344L|DVL3_uc003fmu.2_Missense_Mutation_p.P505L	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	673					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CCCCCGCCGCCCGCGGCCATG	0.726													15	20					0	0	1	0	0
DVL3	1857	broad.mit.edu	37	3	183888435	183888435	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183888435C>T	uc003fms.2	+	15	2183	c.2043C>T	c.(2041-2043)GCC>GCT	p.A681A	DVL3_uc011bqw.1_Silent_p.A664A|DVL3_uc003fmt.2_Silent_p.A352A|DVL3_uc003fmu.2_Silent_p.A513A	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	681					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CCCCAGGAGCCCCTCCGGGCC	0.697													15	19					0	0	1	0	0
ABCF3	55324	broad.mit.edu	37	3	183907661	183907661	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183907661C>T	uc003fmz.2	+	14	1466	c.1333C>T	c.(1333-1335)CGC>TGC	p.R445C	ABCF3_uc003fna.2_Missense_Mutation_p.R439C|ABCF3_uc003fnb.2_Missense_Mutation_p.R126C	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	445							ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TGACCGGTTTCGCTACAATGC	0.557													12	61					0	0	1	0	0
ECE2	9718	broad.mit.edu	37	3	183995769	183995769	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:183995769C>T	uc003fni.3	+	5	927	c.889C>T	c.(889-891)CTA>TTA	p.L297L	ECE2_uc011brg.1_Silent_p.L225L|ECE2_uc011brh.1_Silent_p.L150L|ECE2_uc003fnl.3_Silent_p.L225L|ECE2_uc003fnm.3_Silent_p.L179L|ECE2_uc003fnk.3_Silent_p.L150L|ECE2_uc011bri.1_Silent_p.L212L|ECE2_uc010hxv.2_5'UTR	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	297	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCGCTTCTACCTATCTTGCCT	0.557													28	63					0	0	1	0	0
ECE2	9718	broad.mit.edu	37	3	184002751	184002751	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184002751G>A	uc003fni.3	+	9	1398	c.1360G>A	c.(1360-1362)GCT>ACT	p.A454T	ECE2_uc011brh.1_Missense_Mutation_p.A307T|ECE2_uc003fnl.3_Missense_Mutation_p.A382T|ECE2_uc003fnm.3_Missense_Mutation_p.A336T|ECE2_uc003fnk.3_Missense_Mutation_p.A307T|ECE2_uc011bri.1_Missense_Mutation_p.A369T|ECE2_uc010hxv.2_Missense_Mutation_p.A98T	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	454	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TTTCTTTCAGGCTCTGGCGCC	0.547											OREG0015945	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	43					0	0	1	0	0
ECE2	9718	broad.mit.edu	37	3	184003362	184003362	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184003362C>T	uc003fni.3	+	10	1637	c.1599C>T	c.(1597-1599)ACC>ACT	p.T533T	ECE2_uc011brh.1_Silent_p.T386T|ECE2_uc003fnl.3_Silent_p.T461T|ECE2_uc003fnm.3_Silent_p.T415T|ECE2_uc003fnk.3_Silent_p.T386T|ECE2_uc011bri.1_Silent_p.T448T|ECE2_uc010hxv.2_Silent_p.T177T	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	533	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity	p.A533T(1)		ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TGCTGGAGACCCTCTATGGCA	0.512													10	79					0	0	1	0	0
EIF4G1	1981	broad.mit.edu	37	3	184039162	184039162	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184039162C>T	uc003fnp.2	+	10	988	c.790C>T	c.(790-792)CCG>TCG	p.P264S	EIF4G1_uc003fno.1_Missense_Mutation_p.P205S|EIF4G1_uc010hxw.1_Missense_Mutation_p.P100S|EIF4G1_uc003fnt.2_5'UTR|EIF4G1_uc003fnq.2_Missense_Mutation_p.P177S|EIF4G1_uc003fnr.2_Missense_Mutation_p.P100S|EIF4G1_uc010hxx.2_Missense_Mutation_p.P271S|EIF4G1_uc003fns.2_Missense_Mutation_p.P224S|EIF4G1_uc010hxy.2_Missense_Mutation_p.P271S|EIF4G1_uc003fnv.3_Missense_Mutation_p.P264S|EIF4G1_uc003fnu.3_Missense_Mutation_p.P264S|EIF4G1_uc003fnw.2_Missense_Mutation_p.P271S|EIF4G1_uc003fnx.2_Missense_Mutation_p.P68S|EIF4G1_uc003fny.3_Missense_Mutation_p.P68S	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	264					insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GTCGCCTTCTCCGACCCCATC	0.567													29	86					0	0	1	0	0
FAM131A	131408	broad.mit.edu	37	3	184062315	184062315	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184062315C>T	uc003fog.2	+	3	1929	c.565C>T	c.(565-567)CTC>TTC	p.L189F	FAM131A_uc003fob.1_Missense_Mutation_p.L97F|FAM131A_uc003foc.2_Missense_Mutation_p.L135F|FAM131A_uc003foe.2_Missense_Mutation_p.L135F	NM_144635	NP_653236	Q6UXB0	F131A_HUMAN	hypothetical protein LOC131408 precursor	189						extracellular region				breast(1)	1	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGGGCCGCACCTCCAGGACCT	0.632													9	130					0	0	1	0	0
CLCN2	1181	broad.mit.edu	37	3	184075040	184075040	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184075040G>A	uc003foi.2	-	9	1037	c.913C>T	c.(913-915)CTC>TTC	p.L305F	CLCN2_uc003foh.2_5'Flank|CLCN2_uc010hya.1_Missense_Mutation_p.L305F|CLCN2_uc011brl.1_Missense_Mutation_p.L305F|CLCN2_uc011brm.1_Missense_Mutation_p.L261F|CLCN2_uc011brn.1_Missense_Mutation_p.L305F	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	305						chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	GTTTTGAAGAGGGCTGTAATA	0.612													27	59					0	0	1	0	0
THPO	7066	broad.mit.edu	37	3	184090609	184090609	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184090609C>T	uc003fol.1	-	6	969	c.754G>A	c.(754-756)GAA>AAA	p.E252K	THPO_uc003fom.1_Missense_Mutation_p.E248K|THPO_uc003fon.2_Missense_Mutation_p.R213Q|THPO_uc011bro.1_Intron|THPO_uc003fop.2_Missense_Mutation_p.R209Q|THPO_uc011brp.1_Intron|THPO_uc011brq.1_Missense_Mutation_p.R173Q	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	252					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TTCAAGAGTTCGTGTATCCTG	0.557													26	106					0	0	1	0	0
CHRD	8646	broad.mit.edu	37	3	184099561	184099561	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184099561C>T	uc003fov.2	+	5	815	c.569C>T	c.(568-570)TCG>TTG	p.S190L	CHRD_uc003fow.2_5'UTR|CHRD_uc003fox.2_Missense_Mutation_p.S190L|CHRD_uc003foy.2_5'UTR|CHRD_uc010hyc.2_5'UTR|CHRD_uc011brr.1_5'Flank	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	190	CHRD 1.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCCCGAGTCTCGCTGCTGCGC	0.662													13	17					0	0	1	0	0
CHRD	8646	broad.mit.edu	37	3	184099748	184099748	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184099748C>T	uc003fov.2	+	6	885	c.639C>T	c.(637-639)TTC>TTT	p.F213F	CHRD_uc003fow.2_5'UTR|CHRD_uc003fox.2_Silent_p.F213F|CHRD_uc003foy.2_5'UTR|CHRD_uc010hyc.2_5'UTR|CHRD_uc011brr.1_5'Flank	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	213	CHRD 1.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGATCCGCTTCTCAGACTCCA	0.537													14	28					0	0	1	0	0
CHRD	8646	broad.mit.edu	37	3	184101325	184101325	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184101325G>A	uc003fov.2	+	12	1581	c.1335G>A	c.(1333-1335)GGG>GGA	p.G445G	CHRD_uc003fow.2_Silent_p.G75G|CHRD_uc003fox.2_Silent_p.G445G|CHRD_uc003foy.2_Silent_p.G75G|CHRD_uc010hyc.2_Intron|CHRD_uc011brr.1_Silent_p.G75G	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	445	CHRD 3.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AAGTGGTAGGGACAAGCAGTG	0.637													9	42					0	0	1	0	0
CHRD	8646	broad.mit.edu	37	3	184103895	184103895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184103895C>T	uc003fov.2	+	15	2126	c.1880C>T	c.(1879-1881)GCC>GTC	p.A627V	CHRD_uc003fow.2_Missense_Mutation_p.A257V|CHRD_uc003fox.2_Missense_Mutation_p.A627V|CHRD_uc003foy.2_Missense_Mutation_p.A257V|CHRD_uc010hyc.2_Missense_Mutation_p.A217V|CHRD_uc011brr.1_Missense_Mutation_p.A257V	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	627	CHRD 4.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AAAGGCATGGCCTCCCTGATG	0.617													29	80					0	0	1	0	0
CHRD	8646	broad.mit.edu	37	3	184103898	184103898	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184103898C>T	uc003fov.2	+	15	2129	c.1883C>T	c.(1882-1884)TCC>TTC	p.S628F	CHRD_uc003fow.2_Missense_Mutation_p.S258F|CHRD_uc003fox.2_Missense_Mutation_p.S628F|CHRD_uc003foy.2_Missense_Mutation_p.S258F|CHRD_uc010hyc.2_Missense_Mutation_p.S218F|CHRD_uc011brr.1_Missense_Mutation_p.S258F	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	628	CHRD 4.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGCATGGCCTCCCTGATGATC	0.622													29	76					0	0	1	0	0
CHRD	8646	broad.mit.edu	37	3	184104544	184104544	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184104544G>A	uc003fov.2	+	16	2442	c.2196_splice	c.e16+1	p.Q732_splice	CHRD_uc003fow.2_Splice_Site_p.Q362_splice|CHRD_uc003fox.2_Splice_Site_p.Q732_splice|CHRD_uc003foy.2_Splice_Site_p.Q362_splice|CHRD_uc010hyc.2_Splice_Site_p.Q322_splice|CHRD_uc011brr.1_Intron	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor						BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CACCTGCCAGGTAGGAGGTCC	0.657													4	10					0	0	1	0	0
EPHB3	2049	broad.mit.edu	37	3	184293694	184293694	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184293694C>T	uc003foz.2	+	4	1370	c.933C>T	c.(931-933)ACC>ACT	p.T311T		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	311	Cys-rich.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			GCCGTACCACCTCCCCAGCCG	0.617													37	118					0	0	1	0	0
EPHB3	2049	broad.mit.edu	37	3	184295503	184295503	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184295503C>T	uc003foz.2	+	7	1974	c.1537C>T	c.(1537-1539)CTT>TTT	p.L513F		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	513	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			GCTGGACGGGCTTCGGCCTGA	0.642													34	93					0	0	1	0	0
EPHB3	2049	broad.mit.edu	37	3	184298401	184298401	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184298401C>T	uc003foz.2	+	12	2821	c.2384C>T	c.(2383-2385)TCC>TTC	p.S795F		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	795	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			TACACCAGTTCCCTGGTACAG	0.642													30	66					0	0	1	0	0
EPHB3	2049	broad.mit.edu	37	3	184298852	184298852	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184298852G>A	uc003foz.2	+	14	3068	c.2631G>A	c.(2629-2631)CGG>CGA	p.R877R		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	877	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			GCTGGGTGCGGGACCGGAACC	0.602													28	86					0	0	1	0	0
EPHB3	2049	broad.mit.edu	37	3	184299059	184299059	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184299059G>A	uc003foz.2	+	15	3188	c.2751G>A	c.(2749-2751)CTG>CTA	p.L917L		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	917	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			AGCCCCTCCTGGACCGCACGG	0.577													45	110					0	0	1	0	0
VPS8	23355	broad.mit.edu	37	3	184580816	184580816	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184580816C>T	uc003fpb.1	+	15	1521	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	VPS8_uc010hyd.1_Silent_p.F450F	NM_015303	NP_056118	Q8N3P4	VPS8_HUMAN	vacuolar protein sorting 8 homolog isoform b	452							zinc ion binding			ovary(1)	1	all_cancers(143;2.51e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.02e-33)|OV - Ovarian serous cystadenocarcinoma(80;4.81e-22)			GCAGCCATTTCAAATCACTAG	0.408													59	121					0	0	1	0	0
VPS8	23355	broad.mit.edu	37	3	184632794	184632794	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:184632794C>T	uc003fpb.1	+	26	2380	c.2209C>T	c.(2209-2211)CCC>TCC	p.P737S	VPS8_uc010hyd.1_Missense_Mutation_p.P647S|VPS8_uc010hye.1_Missense_Mutation_p.P166S	NM_015303	NP_056118	Q8N3P4	VPS8_HUMAN	vacuolar protein sorting 8 homolog isoform b	739							zinc ion binding			ovary(1)	1	all_cancers(143;2.51e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.02e-33)|OV - Ovarian serous cystadenocarcinoma(80;4.81e-22)			TCGTGCCTATCCCCTTGGTGA	0.428													22	73					0	0	1	0	0
MAP3K13	9175	broad.mit.edu	37	3	185146729	185146729	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185146729C>T	uc010hyf.2	+	3	626	c.360C>T	c.(358-360)TTC>TTT	p.F120F	MAP3K13_uc011brt.1_Intron|MAP3K13_uc003fph.3_5'UTR|MAP3K13_uc011bru.1_Intron|MAP3K13_uc003fpi.2_Silent_p.F120F|MAP3K13_uc010hyg.2_5'UTR	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	120					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			AGATTCAGTTCAGCAGGTCAG	0.488													22	63					0	0	1	0	0
MAP3K13	9175	broad.mit.edu	37	3	185165676	185165676	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185165676C>T	uc010hyf.2	+	6	1217	c.951C>T	c.(949-951)GTC>GTT	p.V317V	MAP3K13_uc011brt.1_Silent_p.V110V|MAP3K13_uc003fph.3_Silent_p.V85V|MAP3K13_uc011bru.1_Silent_p.V173V|MAP3K13_uc003fpi.2_Silent_p.V317V|MAP3K13_uc010hyg.2_Silent_p.V7V	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	317	Protein kinase.				activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding	p.V317F(1)		ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			CTGGCACGGTCGCATGGATGG	0.448													6	43					0	0	1	0	0
LIPH	200879	broad.mit.edu	37	3	185229332	185229332	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185229332C>T	uc003fpm.2	-	9	1358	c.1248G>A	c.(1246-1248)AGG>AGA	p.R416R	LIPH_uc010hyh.2_Silent_p.R382R	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	416					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GGGCAAGGGACCTTAACTTCA	0.468													34	69					0	0	1	0	0
LIPH	200879	broad.mit.edu	37	3	185229469	185229469	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185229469G>A	uc003fpm.2	-	9	1221	c.1111C>T	c.(1111-1113)CAG>TAG	p.Q371*	LIPH_uc010hyh.2_Nonsense_Mutation_p.Q337*	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	371					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			TGATATTTCTGAAATGTGGTG	0.393													28	80					0	0	1	0	0
LIPH	200879	broad.mit.edu	37	3	185232257	185232257	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185232257C>T	uc003fpm.2	-	8	1145	c.1035G>A	c.(1033-1035)GGG>GGA	p.G345G	LIPH_uc010hyh.2_Silent_p.G311G	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	345					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			TGGTAATGTCCCCTCTTCTTA	0.378													26	86					0	0	1	0	0
SENP2	59343	broad.mit.edu	37	3	185318607	185318607	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185318607C>T	uc003fpn.2	+	5	584	c.413C>T	c.(412-414)ACC>ATC	p.T138I	SENP2_uc011brv.1_Missense_Mutation_p.T128I|SENP2_uc011brw.1_5'UTR	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	138					mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GTGACAGTTACCCGAGATCAG	0.363													41	202					0	0	1	0	0
C3orf65	646600	broad.mit.edu	37	3	185434297	185434297	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185434297G>A	uc003fpr.2	+	2	306	c.130G>A	c.(130-132)GGA>AGA	p.G44R	IGF2BP2_uc010hyi.2_Intron|IGF2BP2_uc010hyj.2_Intron|IGF2BP2_uc010hyk.2_Intron|IGF2BP2_uc010hyl.2_Intron|IGF2BP2_uc003fpo.2_Intron|IGF2BP2_uc003fpp.2_Intron|IGF2BP2_uc003fpq.2_Intron|C3orf65_uc003fps.3_RNA	NR_027317				RecName: Full=Putative uncharacterized protein C3orf65;												0	all_cancers(143;1.5e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			CAGCTTTTGGGGAAGTGGGCT	0.458													8	114					0	0	1	0	0
TRA2B	6434	broad.mit.edu	37	3	185638963	185638963	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185638963G>A	uc003fpv.2	-	6	927	c.651C>T	c.(649-651)CGC>CGT	p.R217R	TRA2B_uc003fpt.2_RNA|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_Silent_p.R117R|TRA2B_uc003fpw.2_Silent_p.R217R	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	217	Linker.				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						AATCCCGACGGCGAGAGCTGC	0.418													25	72					0	0	1	0	0
ETV5	2119	broad.mit.edu	37	3	185766484	185766484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185766484G>A	uc003fpz.2	-	13	1724	c.1477C>T	c.(1477-1479)CTC>TTC	p.L493F	ETV5_uc003fpy.2_Missense_Mutation_p.L535F	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	493					cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			ATGTCCAGGAGGTAAGCGGGG	0.602			T	TMPRSS2|SCL45A3	Prostate 								22	48					0	0	1	0	0
DGKG	1608	broad.mit.edu	37	3	185969700	185969700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:185969700C>T	uc003fqa.2	-	19	2146	c.1609G>A	c.(1609-1611)GGG>AGG	p.G537R	DGKG_uc003fqb.2_Missense_Mutation_p.G498R|DGKG_uc003fqc.2_Missense_Mutation_p.G512R|DGKG_uc011brx.1_Missense_Mutation_p.G478R	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	537	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	AAGCTGCCCCCTTCATAACCT	0.527													11	93					0	0	1	0	0
DGKG	1608	broad.mit.edu	37	3	186006591	186006591	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186006591G>A	uc003fqa.2	-	6	989	c.452C>T	c.(451-453)TCT>TTT	p.S151F	DGKG_uc003fqb.2_Missense_Mutation_p.S151F|DGKG_uc003fqc.2_Missense_Mutation_p.S151F|DGKG_uc011brx.1_Missense_Mutation_p.S151F	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	151	Poly-Ser.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	CGAGCTTGAAGACCGAGGGAC	0.552													110	264					0	0	1	0	0
DGKG	1608	broad.mit.edu	37	3	186015231	186015231	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186015231C>T	uc003fqa.2	-	5	889	c.352G>A	c.(352-354)GAG>AAG	p.E118K	DGKG_uc003fqb.2_Missense_Mutation_p.E118K|DGKG_uc003fqc.2_Missense_Mutation_p.E118K|DGKG_uc011brx.1_Missense_Mutation_p.E118K	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	118					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	GCACAGGCCTCGTCTGCTTTG	0.448													21	106					0	0	1	0	0
DGKG	1608	broad.mit.edu	37	3	186015882	186015882	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186015882C>T	uc003fqa.2	-	4	818	c.281G>A	c.(280-282)GGA>GAA	p.G94E	DGKG_uc003fqb.2_Missense_Mutation_p.G94E|DGKG_uc003fqc.2_Missense_Mutation_p.G94E|DGKG_uc011brx.1_Missense_Mutation_p.G94E	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	94					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	GTTGCTGGCTCCCTCCGTCGG	0.617													22	97					0	0	1	0	0
TBCCD1	55171	broad.mit.edu	37	3	186272334	186272334	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186272334G>A	uc003fqg.2	-	6	1382	c.1253C>T	c.(1252-1254)CCT>CTT	p.P418L	TBCCD1_uc011bry.1_Missense_Mutation_p.P418L|TBCCD1_uc003fqh.2_Missense_Mutation_p.P322L	NM_018138	NP_060608	Q9NVR7	TBCC1_HUMAN	TBCC domain containing 1	418	C-CAP/cofactor C-like.				cell morphogenesis|maintenance of centrosome location|maintenance of Golgi location|regulation of cell migration|regulation of cell shape	spindle pole centrosome	binding			large_intestine(1)|ovary(1)	2	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.3e-21)	GBM - Glioblastoma multiforme(93;0.0474)		TGTATGAAAAGGGGCAAAAGT	0.468													13	41					0	0	1	0	0
TBCCD1	55171	broad.mit.edu	37	3	186274254	186274254	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186274254G>A	uc003fqg.2	-	4	932	c.803C>T	c.(802-804)CCA>CTA	p.P268L	TBCCD1_uc011bry.1_Missense_Mutation_p.P268L|TBCCD1_uc003fqh.2_Missense_Mutation_p.P172L	NM_018138	NP_060608	Q9NVR7	TBCC1_HUMAN	TBCC domain containing 1	268					cell morphogenesis|maintenance of centrosome location|maintenance of Golgi location|regulation of cell migration|regulation of cell shape	spindle pole centrosome	binding			large_intestine(1)|ovary(1)	2	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.3e-21)	GBM - Glioblastoma multiforme(93;0.0474)		TGTACCAAATGGATTCCCAGT	0.388													31	61					0	0	1	0	0
AHSG	197	broad.mit.edu	37	3	186338496	186338496	+	Missense_Mutation	SNP	C	T	T	rs145128363		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186338496C>T	uc003fqk.3	+	7	962	c.881C>T	c.(880-882)CCC>CTC	p.P294L	AHSG_uc003fql.3_Missense_Mutation_p.P295L|AHSG_uc003fqm.3_Missense_Mutation_p.P293L|AHSG_uc010hyp.2_Missense_Mutation_p.P257L	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	294					acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		GCTGGCTCACCCCCAGACTCC	0.637													39	179					0	0	1	0	0
AHSG	197	broad.mit.edu	37	3	186338623	186338624	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186338623_186338624CC>TT	uc003fqk.3	+	7	1089_1090	c.1008_1009CC>TT	c.(1006-1011)CCCCGG>CCTTGG	p.R337W	AHSG_uc003fql.3_Missense_Mutation_p.R338W|AHSG_uc003fqm.3_Missense_Mutation_p.R336W|AHSG_uc010hyp.2_Missense_Mutation_p.R300W	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	337					acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		TGTCGCACCCCCGGAAAACACG	0.609													28	86					0	0	1	0	0
FETUB	26998	broad.mit.edu	37	3	186362702	186362702	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186362702C>T	uc010hyq.2	+	5	848	c.587C>T	c.(586-588)TCT>TTT	p.S196F	FETUB_uc011brz.1_Missense_Mutation_p.S48F|FETUB_uc003fqn.2_Missense_Mutation_p.S196F|FETUB_uc003fqo.2_Missense_Mutation_p.S91F|FETUB_uc010hyr.2_Missense_Mutation_p.S159F|FETUB_uc010hys.2_Missense_Mutation_p.S48F|FETUB_uc003fqp.3_Missense_Mutation_p.S131F	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	196	Cystatin fetuin-B-type 2.					extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		ACCAGGGCTTCTAGCCAGGTA	0.478													17	74					0	0	1	0	0
FETUB	26998	broad.mit.edu	37	3	186364116	186364116	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186364116C>T	uc010hyq.2	+	6	935	c.674C>T	c.(673-675)TCA>TTA	p.S225L	FETUB_uc011brz.1_Missense_Mutation_p.S77L|FETUB_uc003fqn.2_Missense_Mutation_p.S225L|FETUB_uc003fqo.2_Missense_Mutation_p.S120L|FETUB_uc010hyr.2_Missense_Mutation_p.S188L|FETUB_uc010hys.2_Missense_Mutation_p.S77L|FETUB_uc003fqp.3_Missense_Mutation_p.S160L	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	225	Cystatin fetuin-B-type 2.					extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		AGCAGCTGTTCACTTCAGTCC	0.408													47	125					0	0	1	0	0
HRG	3273	broad.mit.edu	37	3	186389428	186389428	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186389428C>T	uc003fqq.2	+	4	431	c.408C>T	c.(406-408)GCC>GCT	p.A136A		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	136	Cystatin 1.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		CAGCACTGGCCAATACCAAAG	0.423													40	70					0	0	1	0	0
KNG1	3827	broad.mit.edu	37	3	186435269	186435269	+	Translation_Start_Site	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186435269C>G	uc011bsa.1	+	1	150	c.-62C>G	c.(-64--60)ATCCC>ATGCC		KNG1_uc003fqr.2_Translation_Start_Site	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1						blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	AATTCAGTATCCCAGTTGGCT	0.483													12	37					0	0	1	0	0
KNG1	3827	broad.mit.edu	37	3	186437989	186437989	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186437989G>A	uc011bsa.1	+	2	503	c.291G>A	c.(289-291)AAG>AAA	p.K97K	KNG1_uc003fqr.2_Silent_p.K97K	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	97	Cystatin 1.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	GTGAGTACAAGGATGCTGCAA	0.453													23	36					0	0	1	0	0
KNG1	3827	broad.mit.edu	37	3	186445073	186445073	+	Silent	SNP	G	A	A	rs142183659		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186445073G>A	uc011bsa.1	+	5	824	c.612G>A	c.(610-612)ACG>ACA	p.T204T	KNG1_uc003fqr.2_Silent_p.T204T	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	204	Cystatin 2.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	TTGTGCAAACGAATTGTTCCA	0.348													16	97					0	0	1	0	0
KNG1	3827	broad.mit.edu	37	3	186445088	186445088	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186445088G>A	uc011bsa.1	+	5	839	c.627G>A	c.(625-627)GAG>GAA	p.E209E	KNG1_uc003fqr.2_Silent_p.E209E	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	209	Cystatin 2.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	GTTCCAAAGAGAATTTTCTGT	0.343													10	107					0	0	1	0	0
KNG1	3827	broad.mit.edu	37	3	186459360	186459360	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186459360G>A	uc011bsa.1	+	10	1387	c.1175G>A	c.(1174-1176)CGA>CAA	p.R392Q	KNG1_uc003fqr.2_Missense_Mutation_p.R392Q	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	392					blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	CGATCATCACGAATAGGGGAA	0.403													18	105					0	0	1	0	0
KNG1	3827	broad.mit.edu	37	3	186459485	186459485	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186459485G>A	uc011bsa.1	+	10	1512	c.1300G>A	c.(1300-1302)GAA>AAA	p.E434K	KNG1_uc003fqr.2_Intron	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	434	|His-rich.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	CTGGGGCCATGAAAAACAAAG	0.493													20	54					0	0	1	0	0
ST6GAL1	6480	broad.mit.edu	37	3	186761062	186761062	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186761062G>A	uc003frb.2	+	4	1003	c.571G>A	c.(571-573)GGA>AGA	p.G191R	ST6GAL1_uc003frc.2_Intron|ST6GAL1_uc003frd.2_Missense_Mutation_p.G191R	NM_173216	NP_775323	P15907	SIAT1_HUMAN	ST6 beta-galactosamide	191	Lumenal (Potential).				humoral immune response|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			central_nervous_system(1)	1	all_cancers(143;2.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;8.53e-19)	GBM - Glioblastoma multiforme(93;0.0939)		GTCGTCAGCGGGATCTCTGAA	0.522													26	141					0	0	1	0	0
RTP1	132112	broad.mit.edu	37	3	186917640	186917640	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186917640G>A	uc003frg.2	+	2	604	c.574G>A	c.(574-576)GAG>AAG	p.E192K		NM_153708	NP_714919	P59025	RTP1_HUMAN	receptor transporting protein 1	192	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding			ovary(2)|breast(1)	3	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		AGAGTTCTGCGAGGCCTGCCA	0.701													12	32					0	0	1	0	0
MASP1	5648	broad.mit.edu	37	3	186944231	186944231	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186944231C>T	uc003frh.1	-	12	1851	c.1519G>A	c.(1519-1521)GAC>AAC	p.D507N		NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	507	Peptidase S1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		CTGAGCAAGTCTGAATCACGT	0.572													3	12					0	0	1	0	0
MASP1	5648	broad.mit.edu	37	3	186944252	186944252	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:186944252C>T	uc003frh.1	-	12	1830	c.1498G>A	c.(1498-1500)GAT>AAT	p.D500N		NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	500	Peptidase S1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		AGGGTCGGATCTTCCGGATCG	0.577													3	15					0	0	1	0	0
RTP2	344892	broad.mit.edu	37	3	187416366	187416366	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:187416366G>A	uc003fro.1	-	2	1027	c.598C>T	c.(598-600)CGC>TGC	p.R200C		NM_001004312	NP_001004312	Q5QGT7	RTP2_HUMAN	receptor transporting protein 2	200	Helical; (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding				0	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0515)		AGGCACCAGCGAAGAGACAAG	0.587													16	72					0	0	1	0	0
RTP2	344892	broad.mit.edu	37	3	187419802	187419802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:187419802C>T	uc003fro.1	-	1	544	c.115G>A	c.(115-117)GAG>AAG	p.E39K		NM_001004312	NP_001004312	Q5QGT7	RTP2_HUMAN	receptor transporting protein 2	39	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding				0	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0515)		GGGGCCAGCTCACTGGGCTTG	0.592													49	181					0	0	1	0	0
BCL6	604	broad.mit.edu	37	3	187447255	187447255	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:187447255G>A	uc003frp.3	-	5	1395	c.938C>T	c.(937-939)GCC>GTC	p.A313V	BCL6_uc011bsf.1_Missense_Mutation_p.A313V|BCL6_uc010hza.2_Missense_Mutation_p.A211V|BCL6_uc003frq.1_Missense_Mutation_p.A313V	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	313					negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		GAAATGCAGGGCAATCTCATC	0.592			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								44	104					0	0	1	0	0
LPP	4026	broad.mit.edu	37	3	188202397	188202397	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:188202397C>T	uc003frs.1	+	4	457	c.211C>T	c.(211-213)CCA>TCA	p.P71S	LPP_uc011bsg.1_Missense_Mutation_p.P71S|LPP_uc011bsi.1_Missense_Mutation_p.P71S|LPP_uc003frt.2_Missense_Mutation_p.P71S	NM_005578	NP_005569	Q93052	LPP_HUMAN	LIM domain containing preferred translocation	71	Pro-rich.				cell adhesion	cytoplasm|focal adhesion|nucleus	protein binding|zinc ion binding		HMGA2/LPP(161)	soft_tissue(134)|bone(27)|lung(2)|ovary(1)|breast(1)	165	all_cancers(143;1.37e-09)|all_hematologic(3;0.0429)|Ovarian(172;0.088)	all_lung(153;0.00139)|Lung NSC(153;0.00202)		GBM - Glioblastoma multiforme(93;0.00602)		TCTTCCACCCCCACCTCCACC	0.413			T	HMGA2|MLL|C12orf9	lipoma|leukemia								51	157					0	0	1	0	0
LPP	4026	broad.mit.edu	37	3	188592225	188592225	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:188592225C>T	uc003frs.1	+	11	2043	c.1797C>T	c.(1795-1797)GCC>GCT	p.A599A	LPP_uc011bsg.1_Silent_p.A452A|LPP_uc011bsi.1_Silent_p.A599A|LPP_uc011bsj.1_Silent_p.A436A	NM_005578	NP_005569	Q93052	LPP_HUMAN	LIM domain containing preferred translocation	599	LIM zinc-binding 3.				cell adhesion	cytoplasm|focal adhesion|nucleus	protein binding|zinc ion binding		HMGA2/LPP(161)	soft_tissue(134)|bone(27)|lung(2)|ovary(1)|breast(1)	165	all_cancers(143;1.37e-09)|all_hematologic(3;0.0429)|Ovarian(172;0.088)	all_lung(153;0.00139)|Lung NSC(153;0.00202)		GBM - Glioblastoma multiforme(93;0.00602)		GCAACTCTGCCCGCATCAGGG	0.512			T	HMGA2|MLL|C12orf9	lipoma|leukemia								30	73					0	0	1	0	0
TPRG1	285386	broad.mit.edu	37	3	188956533	188956533	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:188956533G>A	uc003frv.1	+	9	1541	c.314G>A	c.(313-315)TGG>TAG	p.W105*	TPRG1_uc003frw.1_Nonsense_Mutation_p.W105*	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	105											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		ATAGACCACTGGAACAATGAG	0.413													45	91					0	0	1	0	0
TPRG1	285386	broad.mit.edu	37	3	188956634	188956634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:188956634C>T	uc003frv.1	+	9	1642	c.415C>T	c.(415-417)CCT>TCT	p.P139S	TPRG1_uc003frw.1_Missense_Mutation_p.P139S	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	139											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		GCAGCGGATTCCTCTGAGCGC	0.478													36	99					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189455532	189455532	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189455532C>T	uc003fry.2	+	2	155	c.66C>T	c.(64-66)TTC>TTT	p.F22F	TP63_uc003frx.2_Silent_p.F22F|TP63_uc003frz.2_Silent_p.F22F|TP63_uc010hzc.1_Silent_p.F22F	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	22	Transcription activation.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TTTTAAGTTTCGTAGAAACCC	0.348									Hay-Wells_syndrome	HNSCC(45;0.13)			27	96					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189526084	189526084	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189526084C>T	uc003fry.2	+	4	437	c.348C>T	c.(346-348)CTC>CTT	p.L116L	TP63_uc003frx.2_Silent_p.L116L|TP63_uc003frz.2_Silent_p.L116L|TP63_uc010hzc.1_Silent_p.L116L|TP63_uc003fsa.2_Silent_p.L22L|TP63_uc003fsb.2_Silent_p.L22L|TP63_uc003fsc.2_Silent_p.L22L|TP63_uc003fsd.2_Silent_p.L22L|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_5'UTR	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	116					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACCTGGGGCTCCTGAACAGCA	0.572									Hay-Wells_syndrome	HNSCC(45;0.13)			39	82					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189586379	189586379	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189586379C>T	uc003fry.2	+	8	1092	c.1003C>T	c.(1003-1005)CTG>TTG	p.L335L	TP63_uc003frx.2_Silent_p.L335L|TP63_uc003frz.2_Silent_p.L335L|TP63_uc010hzc.1_Silent_p.L335L|TP63_uc003fsa.2_Silent_p.L241L|TP63_uc003fsb.2_Silent_p.L241L|TP63_uc003fsc.2_Silent_p.L241L|TP63_uc003fsd.2_Silent_p.L241L|TP63_uc010hzd.1_Silent_p.L156L|TP63_uc003fse.1_Silent_p.L216L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	335					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TGGGCAAGTCCTGGGCCGACG	0.488									Hay-Wells_syndrome	HNSCC(45;0.13)			21	58					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189586385	189586385	+	Nonsense_Mutation	SNP	C	T	T	rs113993966		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189586385C>T	uc003fry.2	+	8	1098	c.1009C>T	c.(1009-1011)CGA>TGA	p.R337*	TP63_uc003frx.2_Nonsense_Mutation_p.R337*|TP63_uc003frz.2_Nonsense_Mutation_p.R337*|TP63_uc010hzc.1_Nonsense_Mutation_p.R337*|TP63_uc003fsa.2_Nonsense_Mutation_p.R243*|TP63_uc003fsb.2_Nonsense_Mutation_p.R243*|TP63_uc003fsc.2_Nonsense_Mutation_p.R243*|TP63_uc003fsd.2_Nonsense_Mutation_p.R243*|TP63_uc010hzd.1_Nonsense_Mutation_p.R158*|TP63_uc003fse.1_Nonsense_Mutation_p.R218*	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	337					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		AGTCCTGGGCCGACGCTGCTT	0.478									Hay-Wells_syndrome	HNSCC(45;0.13)			17	68					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189590653	189590653	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189590653G>A	uc003fry.2	+	10	1307	c.1218G>A	c.(1216-1218)AGG>AGA	p.R406R	TP63_uc003frx.2_Silent_p.R406R|TP63_uc003frz.2_Silent_p.R406R|TP63_uc010hzc.1_Silent_p.R406R|TP63_uc003fsa.2_Silent_p.R312R|TP63_uc003fsb.2_Silent_p.R312R|TP63_uc003fsc.2_Silent_p.R312R|TP63_uc003fsd.2_Silent_p.R312R|TP63_uc010hzd.1_Silent_p.R227R	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	406	Oligomerization.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CATAGGTGAGGGGCCGTGAGA	0.378									Hay-Wells_syndrome	HNSCC(45;0.13)			15	35					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189612091	189612091	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189612091C>T	uc003fry.2	+	14	1932	c.1843C>T	c.(1843-1845)CAT>TAT	p.H615Y	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Missense_Mutation_p.H521Y|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Missense_Mutation_p.H436Y	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	615	Transactivation inhibition.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CTCCCCTTCTCATCTCCTGCG	0.572									Hay-Wells_syndrome	HNSCC(45;0.13)			35	73					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189612096	189612096	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189612096C>T	uc003fry.2	+	14	1937	c.1848C>T	c.(1846-1848)CTC>CTT	p.L616L	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Silent_p.L522L|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Silent_p.L437L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	616	Transactivation inhibition.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CTTCTCATCTCCTGCGGACCC	0.572									Hay-Wells_syndrome	HNSCC(45;0.13)			25	88					0	0	1	0	0
LEPREL1	55214	broad.mit.edu	37	3	189675740	189675740	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189675740C>T	uc011bsk.1	-	15	2476	c.2088G>A	c.(2086-2088)GGG>GGA	p.G696G	LEPREL1_uc003fsg.2_Silent_p.G515G	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	696					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GTTCATGCTTCCCTTGCTGTT	0.313											OREG0015985	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	92					0	0	1	0	0
LEPREL1	55214	broad.mit.edu	37	3	189689737	189689737	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189689737C>T	uc011bsk.1	-	12	2147	c.1759G>A	c.(1759-1761)GAT>AAT	p.D587N	LEPREL1_uc003fsg.2_Missense_Mutation_p.D406N	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	587	Fe2OG dioxygenase.				collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GCCTCTGGATCCAACAAACAG	0.453													14	34					0	0	1	0	0
LEPREL1	55214	broad.mit.edu	37	3	189705318	189705318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189705318C>T	uc011bsk.1	-	5	1484	c.1096G>A	c.(1096-1098)GAG>AAG	p.E366K	LEPREL1_uc003fsg.2_Missense_Mutation_p.E185K	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	366					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GGTCTCACCTCTCTGGCCTCA	0.284													18	30					0	0	1	0	0
LEPREL1	55214	broad.mit.edu	37	3	189706735	189706735	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189706735G>A	uc011bsk.1	-	4	1304	c.916C>T	c.(916-918)CCT>TCT	p.P306S	LEPREL1_uc003fsg.2_Missense_Mutation_p.P125S	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	306	TPR 4.				collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TAGTGCAGAGGAAGAAAATTC	0.493													44	92					0	0	1	0	0
LEPREL1	55214	broad.mit.edu	37	3	189706760	189706760	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:189706760G>A	uc011bsk.1	-	4	1279	c.891C>T	c.(889-891)CGC>CGT	p.R297R	LEPREL1_uc003fsg.2_Silent_p.R116R	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	297					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TGGGAGAGAGGCGGCCAGGGC	0.507													18	96					0	0	1	0	0
CLDN1	9076	broad.mit.edu	37	3	190039813	190039813	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:190039813C>T	uc003fsh.2	-	1	403	c.183G>A	c.(181-183)CAG>CAA	p.Q61Q		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	61	Extracellular (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		TGCACTGGATCTGCCCGGTGC	0.622													6	89					0	0	1	0	0
CLDN1	9076	broad.mit.edu	37	3	190039867	190039867	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:190039867G>A	uc003fsh.2	-	1	349	c.129C>T	c.(127-129)GCC>GCT	p.A43A		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	43	Extracellular (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		ACATGGCCTGGGCGGTCACGA	0.592													25	91					0	0	1	0	0
TMEM207	131920	broad.mit.edu	37	3	190147432	190147432	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:190147432G>A	uc003fsj.2	-	5	460	c.393C>T	c.(391-393)GGC>GGT	p.G131G		NM_207316	NP_997199	Q6UWW9	TM207_HUMAN	transmembrane protein 207 precursor	131						integral to membrane					0	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.0176)		AGCCTAAAGGGCCAAAACATG	0.408													18	88					0	0	1	0	0
TMEM207	131920	broad.mit.edu	37	3	190158179	190158179	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:190158179C>T	uc003fsj.2	-	4	226	c.159_splice	c.e4-1	p.W53_splice		NM_207316	NP_997199	Q6UWW9	TM207_HUMAN	transmembrane protein 207 precursor							integral to membrane					0	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.0176)		CAGGAGGATCCTGACTCCAAA	0.517													7	25					0	0	1	0	0
CCDC50	152137	broad.mit.edu	37	3	191107287	191107287	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:191107287C>T	uc003fsw.2	+	10	1387	c.797C>T	c.(796-798)CCA>CTA	p.P266L	CCDC50_uc003fsv.2_Missense_Mutation_p.P442L	NM_174908	NP_777568	Q8IVM0	CCD50_HUMAN	Ymer protein short isoform	266	Poly-Pro.					cytoplasm	protein binding				0	all_cancers(143;8.88e-09)|Ovarian(172;0.103)|Breast(254;0.221)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000136)		CCTTTTAGGCCACCACCACCT	0.418													65	148					0	0	1	0	0
FGF12	2257	broad.mit.edu	37	3	192053172	192053172	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:192053172C>G	uc003fsx.2	-	3	1218	c.392G>C	c.(391-393)GGT>GCT	p.G131A	FGF12_uc003fsy.2_Missense_Mutation_p.G69A	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	131					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		ATAGCCTTCACCATTCATGGC	0.463													22	98					0	0	1	0	0
FGF12	2257	broad.mit.edu	37	3	192053205	192053205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:192053205C>T	uc003fsx.2	-	3	1185	c.359G>A	c.(358-360)GGA>GAA	p.G120E	FGF12_uc003fsy.2_Missense_Mutation_p.G58E	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	120					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		AGCCTTCACTCCTTGGATGGC	0.458													33	84					0	0	1	0	0
FGF12	2257	broad.mit.edu	37	3	192078283	192078283	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:192078283C>T	uc003fsx.2	-	2	1070	c.244G>A	c.(244-246)GGA>AGA	p.G82R	FGF12_uc003fsy.2_Missense_Mutation_p.G20R	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	82					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		AGGAAGTATCCCTGCTGGCTG	0.398													28	61					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193002904	193002904	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:193002904C>T	uc011bsq.1	-	27	3025	c.3025G>A	c.(3025-3027)GAG>AAG	p.E1009K		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	1009					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		AGAAAACACTCACTACAAAAG	0.318													15	54					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193080175	193080175	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:193080175C>T	uc011bsq.1	-	5	531	c.531G>A	c.(529-531)GAG>GAA	p.E177E		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	177					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CCTACCTGACCTCTTGCTCTT	0.418													19	43					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193120444	193120444	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:193120444G>A	uc003ftd.2	-	30	3696	c.3588C>T	c.(3586-3588)CTC>CTT	p.L1196L	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	1196	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		ATGTCCTTCAGAGTTGTTCTT	0.433													24	27					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193166058	193166058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:193166058C>T	uc003ftd.2	-	18	2197	c.2089G>A	c.(2089-2091)GAA>AAA	p.E697K	ATP13A4_uc003fte.1_Missense_Mutation_p.E697K|ATP13A4_uc011bsr.1_Missense_Mutation_p.E168K|ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	697	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TTTGTCTCTTCCTTCAATCGA	0.388													33	45					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193201771	193201771	+	Silent	SNP	G	A	A	rs111773905	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:193201771G>A	uc003ftd.2	-	8	870	c.762C>T	c.(760-762)CTC>CTT	p.L254L	ATP13A4_uc003fte.1_Silent_p.L254L|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	254	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GTGACTCGACGAGATGGTGGA	0.348													48	63					0	0	1	0	0
OPA1	4976	broad.mit.edu	37	3	193361862	193361862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:193361862C>T	uc003ftm.2	+	14	1645	c.1411C>T	c.(1411-1413)CTG>TTG	p.L471L	OPA1_uc003ftg.2_Silent_p.L526L|OPA1_uc003fth.2_Silent_p.L490L|OPA1_uc003fti.2_Silent_p.L508L|OPA1_uc003ftj.2_Silent_p.L489L|OPA1_uc003ftk.2_Silent_p.L472L|OPA1_uc003ftl.2_Silent_p.L453L|OPA1_uc003ftn.2_Silent_p.L435L	NM_015560	NP_056375	O60313	OPA1_HUMAN	optic atrophy 1 isoform 1	471	Mitochondrial intermembrane (By similarity).				apoptosis|axon transport of mitochondrion|inner mitochondrial membrane organization|mitochondrial fission|mitochondrial fusion|positive regulation of anti-apoptosis|response to stimulus|visual perception	dendrite|integral to membrane|mitochondrial crista|mitochondrial intermembrane space|mitochondrial outer membrane	GTP binding|GTPase activity|magnesium ion binding|protein binding				0	all_cancers(143;9.56e-09)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;9.19e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000162)		CAAAGTAGACCTGGCAGAGAA	0.433													32	44					0	0	1	0	0
CPN2	1370	broad.mit.edu	37	3	194062985	194062985	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:194062985G>A	uc003fts.2	-	2	537	c.447C>T	c.(445-447)TCC>TCT	p.S149S		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	149	LRR 3.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		GCAGGTGGAGGGACTCCAGGG	0.627													15	30					0	0	1	0	0
GP5	2814	broad.mit.edu	37	3	194117701	194117702	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:194117701_194117702CC>TT	uc003ftv.1	-	2	1341_1342	c.1310_1311GG>AA	c.(1309-1311)CGG>CAA	p.R437Q		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	437	Extracellular (Potential).|LRRCT.				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		CTAGGTGCTGCCGCAGCCACCC	0.757													7	1					0	0	1	0	0
GP5	2814	broad.mit.edu	37	3	194118751	194118751	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:194118751G>A	uc003ftv.1	-	2	292	c.261C>T	c.(259-261)TCC>TCT	p.S87S		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	87	LRR 1.|Extracellular (Potential).				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		GGGCAACGGCGGAAATGTGGC	0.587													41	62					0	0	1	0	0
TMEM44	93109	broad.mit.edu	37	3	194343970	194343970	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:194343970G>A	uc010hzn.2	-	5	764	c.595C>T	c.(595-597)CCC>TCC	p.P199S	TMEM44_uc003fue.2_Missense_Mutation_p.P199S|TMEM44_uc003fud.2_Missense_Mutation_p.P199S|TMEM44_uc003fuf.2_Missense_Mutation_p.P199S|TMEM44_uc011bsv.1_Missense_Mutation_p.P199S|TMEM44_uc003fuh.1_RNA	NM_001011655	NP_001011655	Q2T9K0	TMM44_HUMAN	transmembrane protein 44 isoform b	199	Helical; (Potential).					integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;9.06e-06)		GAGAGAGGGGGGATCCGAGAA	0.592													7	11					0	0	1	0	0
TMEM44	93109	broad.mit.edu	37	3	194344019	194344019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:194344019G>A	uc010hzn.2	-	5	715	c.546C>T	c.(544-546)GGC>GGT	p.G182G	TMEM44_uc003fue.2_Silent_p.G182G|TMEM44_uc003fud.2_Silent_p.G182G|TMEM44_uc003fuf.2_Silent_p.G182G|TMEM44_uc011bsv.1_Silent_p.G182G|TMEM44_uc003fuh.1_RNA	NM_001011655	NP_001011655	Q2T9K0	TMM44_HUMAN	transmembrane protein 44 isoform b	182	Helical; (Potential).					integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;9.06e-06)		CCAGCAGGTAGCCGAGGATCT	0.577													7	9					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195490982	195490982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:195490982G>A	uc011bto.1	-	12	14054	c.13594C>T	c.(13594-13596)CTC>TTC	p.L4532F	MUC4_uc003fuz.2_Missense_Mutation_p.L258F|MUC4_uc003fva.2_Missense_Mutation_p.L140F|MUC4_uc003fvb.2_Missense_Mutation_p.L176F|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.L176F|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Missense_Mutation_p.L140F|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.L224F|MUC4_uc011bti.1_Missense_Mutation_p.L224F|MUC4_uc011btj.1_Missense_Mutation_p.L401F|MUC4_uc011btk.1_Missense_Mutation_p.L140F|MUC4_uc011btl.1_Missense_Mutation_p.L169F|MUC4_uc011btm.1_Missense_Mutation_p.L349F|MUC4_uc011btn.1_Missense_Mutation_p.L140F|MUC4_uc003fvo.2_Missense_Mutation_p.L424F|MUC4_uc003fvp.2_Missense_Mutation_p.L373F|MUC4_uc010hzu.1_Missense_Mutation_p.L1272F	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1417	AMOP.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AGGGCACAGAGGTAGGGCTTG	0.657													4	6					0	0	1	0	0
TM4SF19	116211	broad.mit.edu	37	3	196053858	196053858	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:196053858C>T	uc003fwl.1	-	3	372	c.247G>A	c.(247-249)GGC>AGC	p.G83S	TM4SF19_uc003fwj.2_RNA|TM4SF19_uc010iad.1_Missense_Mutation_p.G83S|TM4SF19_uc011btv.1_Intron	NM_138461	NP_612470	Q96DZ7	T4S19_HUMAN	transmembrane 4 L six family member 19	83	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;3.94e-24)|all cancers(36;4.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.53e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00314)		CTGAAGCAGCCGTATCTCCAG	0.468													8	25					0	0	1	0	0
LRRC33	375387	broad.mit.edu	37	3	196388524	196388524	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:196388524C>T	uc003fwv.2	+	3	2114	c.2010C>T	c.(2008-2010)ATC>ATT	p.I670I		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	670	Helical; (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		GCACTGTCATCGTCCTCACTT	0.597													45	78					0	0	1	0	0
MFI2	4241	broad.mit.edu	37	3	196749920	196749920	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:196749920G>A	uc003fxk.3	-	5	665	c.552C>T	c.(550-552)TCC>TCT	p.S184S	MFI2_uc003fxl.3_Silent_p.S184S|MFI2_uc011bua.1_Intron	NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	184	Transferrin-like 1.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		GGCGACAGAGGGACTCAGAGT	0.617													25	29					0	0	1	0	0
BDH1	622	broad.mit.edu	37	3	197239115	197239115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:197239115G>A	uc003fxr.2	-	8	1085	c.683C>T	c.(682-684)CCC>CTC	p.P228L	BDH1_uc003fxs.2_Missense_Mutation_p.P228L|BDH1_uc003fxt.2_Missense_Mutation_p.P141L|BDH1_uc003fxu.2_Missense_Mutation_p.P228L	NM_203314	NP_976059	Q02338	BDH_HUMAN	3-hydroxybutyrate dehydrogenase, type 1	228					cellular lipid metabolic process|ketone body biosynthetic process|ketone body catabolic process	mitochondrial matrix	3-hydroxybutyrate dehydrogenase activity			ovary(1)	1	all_cancers(143;3.35e-10)|Ovarian(172;0.0418)|Breast(254;0.0437)	Lung NSC(153;0.118)	Epithelial(36;3.52e-24)|all cancers(36;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;2.32e-19)|LUSC - Lung squamous cell carcinoma(58;1.02e-06)|Lung(62;1.34e-06)	GBM - Glioblastoma multiforme(93;0.0977)	NADH(DB00157)	CACGCCCAGGGGGTACATCTC	0.622													19	25					0	0	1	0	0
BDH1	622	broad.mit.edu	37	3	197273245	197273245	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:197273245C>T	uc003fxr.2	-	3	472	c.70G>A	c.(70-72)GAA>AAA	p.E24K	BDH1_uc003fxs.2_Missense_Mutation_p.E24K|BDH1_uc003fxt.2_Intron|BDH1_uc003fxu.2_Missense_Mutation_p.E24K	NM_203314	NP_976059	Q02338	BDH_HUMAN	3-hydroxybutyrate dehydrogenase, type 1	24					cellular lipid metabolic process|ketone body biosynthetic process|ketone body catabolic process	mitochondrial matrix	3-hydroxybutyrate dehydrogenase activity			ovary(1)	1	all_cancers(143;3.35e-10)|Ovarian(172;0.0418)|Breast(254;0.0437)	Lung NSC(153;0.118)	Epithelial(36;3.52e-24)|all cancers(36;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;2.32e-19)|LUSC - Lung squamous cell carcinoma(58;1.02e-06)|Lung(62;1.34e-06)	GBM - Glioblastoma multiforme(93;0.0977)	NADH(DB00157)	GCTCCATTTTCTCTATCACAG	0.557													43	39					0	0	1	0	0
LMLN	89782	broad.mit.edu	37	3	197703506	197703506	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:197703506G>A	uc011buo.1	+	5	491	c.469G>A	c.(469-471)GAT>AAT	p.D157N	LMLN_uc003fyt.2_Missense_Mutation_p.D105N|LMLN_uc010iar.2_Missense_Mutation_p.D157N|LMLN_uc010ias.2_Missense_Mutation_p.D105N|LMLN_uc003fyu.2_5'UTR	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	157					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		GAAGGAAAACGATCCTCACAG	0.438													86	98					0	0	1	0	0
LMLN	89782	broad.mit.edu	37	3	197765482	197765482	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:197765482C>T	uc011buo.1	+	16	1934	c.1912C>T	c.(1912-1914)CTG>TTG	p.L638L	LMLN_uc003fyt.2_Silent_p.L623L|LMLN_uc010iar.2_Silent_p.L675L|LMLN_uc010ias.2_Silent_p.L586L|LMLN_uc003fyu.2_Silent_p.L435L	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	638					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		CCTCTGGCTTCTGCTAGGCAA	0.393													25	91					0	0	1	0	0
ZNF732	654254	broad.mit.edu	37	4	299136	299136	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:299136G>A	uc010ibb.1	-	1		c.128C>T						B4DXR9	ZN732_HUMAN	Homo sapiens chromosome 4 isolate HA_003619 mRNA sequence.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCAGCTACGAATCATCCAA	0.632													4	40					0	0	1	0	0
ZNF141	7700	broad.mit.edu	37	4	367194	367194	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:367194C>T	uc003gaa.2	+	5	1146	c.968C>T	c.(967-969)TCC>TTC	p.S323F	ZNF141_uc003gab.2_Intron	NM_003441	NP_003432	Q15928	ZN141_HUMAN	zinc finger protein 141	323	C2H2-type 6.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0						TTTAATAGGTCCACAACCCTT	0.378													36	101					0	0	1	0	0
ABCA11P	79963	broad.mit.edu	37	4	420330	420330	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:420330G>A	uc003gae.2	-	5	1111	c.576C>T	c.(574-576)TTC>TTT	p.F192F	ABCA11P_uc003gac.2_Silent_p.F141F|ABCA11P_uc003gad.2_RNA|ABCA11P_uc011buv.1_3'UTR|ABCA11P_uc010ibd.1_Silent_p.F192F					RecName: Full=Putative ATP-binding cassette sub-family A member 11;												0						CAGTACCCAAGAACTTGAGGC	0.488													31	77					0	0	1	0	0
ABCA11P	79963	broad.mit.edu	37	4	420538	420538	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:420538G>A	uc003gae.2	-	5	903	c.368C>T	c.(367-369)GCT>GTT	p.A123V	ABCA11P_uc003gac.2_Missense_Mutation_p.A72V|ABCA11P_uc003gad.2_RNA|ABCA11P_uc011buv.1_3'UTR|ABCA11P_uc010ibd.1_Missense_Mutation_p.A123V					RecName: Full=Putative ATP-binding cassette sub-family A member 11;												0						TTGTTGAAAAGCAACTTTCTT	0.393													16	29					0	0	1	0	0
PIGG	54872	broad.mit.edu	37	4	514923	514923	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:514923C>T	uc003gak.3	+	7	1329	c.1193C>T	c.(1192-1194)TCA>TTA	p.S398L	PIGG_uc003gaj.3_Missense_Mutation_p.S398L|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Missense_Mutation_p.S265L|PIGG_uc003gal.3_Missense_Mutation_p.S309L|PIGG_uc003gai.2_RNA|PIGG_uc011buw.1_Missense_Mutation_p.S276L|PIGG_uc003gam.2_Intron|PIGG_uc003gan.2_Missense_Mutation_p.S309L	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	398	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						GAAAAGCATTCAGAAGTCCTA	0.473													33	87					0	0	1	0	0
PIGG	54872	broad.mit.edu	37	4	517373	517373	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:517373C>T	uc003gak.3	+	9	1876	c.1740C>T	c.(1738-1740)TTC>TTT	p.F580F	PIGG_uc003gaj.3_Silent_p.F572F|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Silent_p.F447F|PIGG_uc003gal.3_Silent_p.F491F	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	580					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CCTGGTACTTCCTTGTGAACA	0.567													54	119					0	0	1	0	0
PIGG	54872	broad.mit.edu	37	4	517561	517561	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:517561C>T	uc003gak.3	+	9	2064	c.1928C>T	c.(1927-1929)TCC>TTC	p.S643F	PIGG_uc003gaj.3_Missense_Mutation_p.S635F|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Missense_Mutation_p.S510F|PIGG_uc003gal.3_Missense_Mutation_p.S554F	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	643					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CCCTCTACCTCCGAAGTGCTC	0.637													15	48					0	0	1	0	0
PIGG	54872	broad.mit.edu	37	4	520865	520865	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:520865C>T	uc003gak.3	+	10	2243	c.2107C>T	c.(2107-2109)CTC>TTC	p.L703F	PIGG_uc003gaj.3_Missense_Mutation_p.L695F|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Missense_Mutation_p.L570F|PIGG_uc003gal.3_Missense_Mutation_p.L614F	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	703	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CCTGGCTGCCCTCTCCCTCCT	0.572													14	35					0	0	1	0	0
PIGG	54872	broad.mit.edu	37	4	527691	527691	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:527691C>T	uc003gak.3	+	12	2792	c.2656C>T	c.(2656-2658)CTG>TTG	p.L886L	PIGG_uc003gaj.3_Silent_p.L878L|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Silent_p.L753L|PIGG_uc003gal.3_Silent_p.L797L	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	886	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						AGCCGTGCTCCTGACAGCGTT	0.592													28	49					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	619829	619829	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:619829C>T	uc003gap.2	+	1	467	c.414C>T	c.(412-414)GTC>GTT	p.V138V	PDE6B_uc003gao.3_Silent_p.V138V	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	138	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						ACATCGGGGTCGTGGGCCACG	0.647													6	9					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	628613	628613	+	Missense_Mutation	SNP	G	A	A	rs140444984		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:628613G>A	uc003gap.2	+	2	669	c.616G>A	c.(616-618)GAA>AAA	p.E206K	PDE6B_uc003gao.3_Missense_Mutation_p.E206K	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	206	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						CAGCGAAGACGAAGATGTGAG	0.393													19	45					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	629674	629674	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:629674C>T	uc003gap.2	+	3	680	c.627C>T	c.(625-627)TTC>TTT	p.F209F	PDE6B_uc003gao.3_Silent_p.F209F	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	209	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						TTCAGGTGTTCTTGAAGTACC	0.507													17	48					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	650775	650775	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:650775G>A	uc003gap.2	+	9	1273	c.1220G>A	c.(1219-1221)GGG>GAG	p.G407E	PDE6B_uc003gao.3_Missense_Mutation_p.G407E|PDE6B_uc011buy.1_Missense_Mutation_p.G128E|uc003gaq.1_5'Flank	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	407	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						AGGAAAGACGGGAAGCCCTTT	0.587													26	51					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	654295	654295	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:654295G>A	uc003gap.2	+	12	1560	c.1507G>A	c.(1507-1509)GAA>AAA	p.E503K	PDE6B_uc003gao.3_Missense_Mutation_p.E503K|PDE6B_uc011buy.1_Missense_Mutation_p.E224K	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	503					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						TGACATCTACGAATTCCACTT	0.572													7	38					0	0	1	0	0
MFSD7	84179	broad.mit.edu	37	4	680390	680390	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:680390G>A	uc003gay.2	-	2	282	c.225C>T	c.(223-225)TAC>TAT	p.Y75Y	MFSD7_uc003gaw.2_5'Flank|MFSD7_uc003gax.2_Silent_p.Y75Y|MFSD7_uc003gaz.2_Silent_p.Y53Y|MFSD7_uc003gba.2_Silent_p.Y75Y|MFSD7_uc003gbb.1_Silent_p.Y11Y	NM_032219	NP_115595	Q6UXD7	MFSD7_HUMAN	major facilitator superfamily domain containing	75	Helical; (Potential).				transmembrane transport	integral to membrane					0						ATACCACGAGGTAGACCAGTG	0.627													24	79					0	0	1	0	0
GAK	2580	broad.mit.edu	37	4	858969	858969	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:858969C>T	uc003gbm.3	-	23	3306	c.3107G>A	c.(3106-3108)GGA>GAA	p.G1036E	GAK_uc003gbn.3_Missense_Mutation_p.G957E|GAK_uc010ibi.2_Missense_Mutation_p.G217E|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.G889E	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	1036					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		GGCAGCCCATCCTCCCAGCAG	0.632													24	32					0	0	1	0	0
TMEM175	84286	broad.mit.edu	37	4	946159	946159	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:946159C>T	uc003gbq.2	+	7	481	c.383C>T	c.(382-384)TCG>TTG	p.S128L	TMEM175_uc010ibl.1_Missense_Mutation_p.S128L|TMEM175_uc003gbp.1_Missense_Mutation_p.S46L|TMEM175_uc003gbr.2_Missense_Mutation_p.S46L|TMEM175_uc003gbu.2_Missense_Mutation_p.S46L|TMEM175_uc003gbs.2_Missense_Mutation_p.S11L|TMEM175_uc003gbt.2_Missense_Mutation_p.S11L|TMEM175_uc003gbv.2_Missense_Mutation_p.S11L|TMEM175_uc010ibm.2_5'UTR	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	128	Helical; (Potential).					integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			TAACAGTTTTCGTTAATGGTG	0.562													27	140					0	0	1	0	0
FGFRL1	53834	broad.mit.edu	37	4	1018323	1018324	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:1018323_1018324CC>TT	uc003gce.2	+	6	1104_1105	c.943_944CC>TT	c.(943-945)CCC>TTC	p.P315F	FGFRL1_uc003gcf.2_Missense_Mutation_p.P315F|FGFRL1_uc003gcg.2_Missense_Mutation_p.P315F|FGFRL1_uc010ibo.2_Missense_Mutation_p.P315F	NM_021923	NP_068742	Q8N441	FGRL1_HUMAN	fibroblast growth factor receptor-like 1	315	Ig-like C2-type 3.|Extracellular (Potential).				regulation of cell growth	integral to membrane|plasma membrane	fibroblast growth factor receptor activity|heparin binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			GTGGTCGCGGCCCGACGGCTCC	0.649													18	74					0	0	1	0	0
CRIPAK	285464	broad.mit.edu	37	4	1389325	1389325	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:1389325C>T	uc003gdf.2	+	1	3986	c.1026C>T	c.(1024-1026)GCC>GCT	p.A342A		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	342					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			GAGTGCCCGCCTGCTCACACG	0.667													31	345					0	0	1	0	0
FAM53A	152877	broad.mit.edu	37	4	1659150	1659150	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:1659150G>A	uc011bve.1	-	3	319	c.121C>T	c.(121-123)CCT>TCT	p.P41S	FAM53A_uc010ibw.2_Missense_Mutation_p.P41S	NM_001013622	NP_001013644	Q6NSI3	FA53A_HUMAN	dorsal neural-tube nuclear protein	41						nucleus					0		all_epithelial(65;0.206)|Breast(71;0.212)	OV - Ovarian serous cystadenocarcinoma(23;0.0145)			AGCTCCAAAGGGAACAGACGA	0.552													4	20					0	0	1	0	0
TACC3	10460	broad.mit.edu	37	4	1732664	1732664	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:1732664C>T	uc003gdo.2	+	5	1544	c.1436C>T	c.(1435-1437)GCC>GTC	p.A479V	TACC3_uc010ibz.2_Missense_Mutation_p.A479V|TACC3_uc003gdp.2_Missense_Mutation_p.A119V|TACC3_uc010ica.2_5'Flank	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	479						centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			CAGTTGGCAGCCGAGACCCCA	0.632													6	53					0	0	1	0	0
FGFR3	2261	broad.mit.edu	37	4	1801497	1801497	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:1801497G>A	uc003gdr.3	+	4	659	c.403G>A	c.(403-405)GAA>AAA	p.E135K	FGFR3_uc003gdu.2_Missense_Mutation_p.E135K|FGFR3_uc003gds.3_Missense_Mutation_p.E135K|FGFR3_uc003gdq.3_Missense_Mutation_p.E135K|FGFR3_uc010icb.1_5'Flank|FGFR3_uc003gdt.1_5'Flank	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	135	Extracellular (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding			urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	GGGAGATGACGAAGACGGGGA	0.682		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				5	42					0	0	1	0	0
FGFR3	2261	broad.mit.edu	37	4	1808329	1808329	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:1808329C>T	uc003gdr.3	+	16	2343	c.2087C>T	c.(2086-2088)CCC>CTC	p.P696L	FGFR3_uc003gdu.2_Missense_Mutation_p.P698L|FGFR3_uc003gds.3_Missense_Mutation_p.P584L|FGFR3_uc003gdq.3_Silent_p.P673P	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	696	Protein kinase.|Cytoplasmic (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding			urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	TCCCCGTACCCCGGCATCCCT	0.647		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				13	47					0	0	1	0	0
LETM1	3954	broad.mit.edu	37	4	1836644	1836644	+	Silent	SNP	G	A	A	rs144059275	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:1836644G>A	uc003gdv.2	-	5	1101	c.804C>T	c.(802-804)ATC>ATT	p.I268I	LETM1_uc010icc.2_Silent_p.I48I|LETM1_uc011bvg.1_Silent_p.I268I	NM_012318	NP_036450	O95202	LETM1_HUMAN	leucine zipper-EF-hand containing transmembrane	268	Mitochondrial matrix (Potential).|LETM1.				cristae formation	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			central_nervous_system(1)	1			all cancers(2;0.00756)|OV - Ovarian serous cystadenocarcinoma(23;0.00989)|Epithelial(3;0.0141)			CCATCTCCTCGATGGTGTCCT	0.562													22	69					0	0	1	0	0
WHSC1	7468	broad.mit.edu	37	4	1957858	1957858	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:1957858G>A	uc003gdz.3	+	15	3000	c.2824G>A	c.(2824-2826)GGG>AGG	p.G942R	WHSC1_uc003geb.3_Missense_Mutation_p.G942R|WHSC1_uc003gec.3_Missense_Mutation_p.G942R|WHSC1_uc003ged.3_Missense_Mutation_p.G942R|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Missense_Mutation_p.G161R|WHSC1_uc011bvh.1_Missense_Mutation_p.G3R|WHSC1_uc010icf.2_Missense_Mutation_p.G290R	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	942	PWWP 2.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		GTACATGGAGGGGGACCGGGG	0.512			T	IGH@	MM								95	230					0	0	1	0	0
POLN	353497	broad.mit.edu	37	4	2132987	2132987	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:2132987G>A	uc003ger.2	-	15	1762	c.1762C>T	c.(1762-1764)CAG>TAG	p.Q588*	POLN_uc010icg.1_Nonsense_Mutation_p.Q36*|POLN_uc010ich.1_Nonsense_Mutation_p.Q120*	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	588					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			GTAGTAATCTGAATTGGGTGC	0.274								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					8	95					0	0	1	0	0
POLN	353497	broad.mit.edu	37	4	2172905	2172905	+	Missense_Mutation	SNP	G	A	A	rs140423155		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:2172905G>A	uc003ger.2	-	10	1378	c.1378C>T	c.(1378-1380)CGT>TGT	p.R460C	POLN_uc010ich.1_Missense_Mutation_p.R51C|POLN_uc011bvi.1_Missense_Mutation_p.R460C	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	460					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			TCCTTGAGACGAGCCTGAAAA	0.343								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					29	62					0	0	1	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2272573	2272573	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:2272573G>A	uc003gex.1	-	13	2862	c.2543C>T	c.(2542-2544)TCG>TTG	p.S848L	ZFYVE28_uc011bvk.1_Missense_Mutation_p.S778L|ZFYVE28_uc011bvl.1_Missense_Mutation_p.S818L|ZFYVE28_uc003gew.1_Missense_Mutation_p.S734L	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	848	FYVE-type.				negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						GGAGCAGCGCGAGCAGAAGAT	0.657													4	30					0	0	1	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2306249	2306249	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:2306249G>A	uc003gex.1	-	8	2137	c.1818C>T	c.(1816-1818)GCC>GCT	p.A606A	ZFYVE28_uc011bvk.1_Silent_p.A536A|ZFYVE28_uc011bvl.1_Silent_p.A576A|ZFYVE28_uc003gew.1_Silent_p.A492A	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	606					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						GTCTCTCAGGGGCCCTGTCGC	0.677													8	43					0	0	1	0	0
SH3BP2	6452	broad.mit.edu	37	4	2829023	2829023	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:2829023C>T	uc003gfi.3	+	6	615	c.495C>T	c.(493-495)TCC>TCT	p.S165S	SH3BP2_uc011bvp.1_Silent_p.S193S|SH3BP2_uc003gfj.3_Silent_p.S222S|SH3BP2_uc003gfk.3_Silent_p.S165S|SH3BP2_uc003gfl.3_Silent_p.S98S|SH3BP2_uc003gfm.3_Silent_p.S140S	NM_001122681	NP_001116153	P78314	3BP2_HUMAN	SH3-domain binding protein 2 isoform a	165					signal transduction		SH3 domain binding|SH3/SH2 adaptor activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.164)		TCAGCCTTTCCCCGTACCCCA	0.627									Cherubism				23	58					0	0	1	0	0
MFSD10	10227	broad.mit.edu	37	4	2935555	2935555	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:2935555G>A	uc003gfw.2	-	1	410	c.96C>T	c.(94-96)CTC>CTT	p.L32L	MFSD10_uc003gfv.2_5'Flank|MFSD10_uc003gfx.2_5'UTR|MFSD10_uc003gfz.2_Silent_p.L32L|MFSD10_uc003gfy.2_RNA|MFSD10_uc003gga.2_Silent_p.L32L|MFSD10_uc003ggb.1_Silent_p.L32L|MFSD10_uc003ggc.2_Silent_p.L32L|C4orf10_uc003ggd.1_5'Flank|C4orf10_uc003gge.1_5'Flank|C4orf10_uc003ggg.1_5'Flank|C4orf10_uc003ggh.2_5'Flank	NM_001120	NP_001111	Q14728	MFS10_HUMAN	major facilitator superfamily domain containing	32	Helical; (Potential).				apoptosis	integral to membrane	tetracycline transporter activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		GGTCCAGCAGGAGGCCGAGAA	0.716													4	4					0	0	1	0	0
GRK4	2868	broad.mit.edu	37	4	3040238	3040238	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3040238G>A	uc003ggn.1	+	15	2136	c.1681G>A	c.(1681-1683)GGG>AGG	p.G561R	GRK4_uc003ggo.1_Intron|GRK4_uc003ggp.1_Missense_Mutation_p.G529R|GRK4_uc003ggq.1_Intron	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	561						cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CTTCAGAAGAGGGGTAAAAAG	0.373													19	84					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3101050	3101050	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3101050C>T	uc011bvq.1	+	4	548	c.403C>T	c.(403-405)CTG>TTG	p.L135L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	133					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GGAACTTTTTCTGCTGTGCAG	0.338													9	88					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3174071	3174071	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3174071C>T	uc011bvq.1	+	31	4040	c.3895C>T	c.(3895-3897)CTG>TTG	p.L1299L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1297					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CCTAGGATACCTGAAATCCTG	0.408													11	126					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3174736	3174736	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3174736C>T	uc011bvq.1	+	32	4195	c.4050C>T	c.(4048-4050)TCC>TCT	p.S1350S		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1348					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TTGGCTCCTCCAGTGTGAGGC	0.587													31	80					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3180142	3180142	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3180142C>T	uc011bvq.1	+	36	4732	c.4587C>T	c.(4585-4587)ATC>ATT	p.I1529I		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1527					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GTGATGGCATCATGGCCAGTG	0.418													31	124					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3188392	3188392	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3188392C>T	uc011bvq.1	+	39	5086	c.4941C>T	c.(4939-4941)TCC>TCT	p.S1647S		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1645					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CCCCTTCCTCCCTCCGTCCGG	0.423													69	174					0	0	1	0	0
RGS12	6002	broad.mit.edu	37	4	3318208	3318208	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3318208C>T	uc003ggw.2	+	2	1215	c.311C>T	c.(310-312)TCC>TTC	p.S104F	RGS12_uc003ggu.2_Missense_Mutation_p.S104F|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.S104F|RGS12_uc003ggx.1_Missense_Mutation_p.S104F	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	104						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CGCTTCGAATCCTGTTCCAGT	0.473													25	84					0	0	1	0	0
RGS12	6002	broad.mit.edu	37	4	3319150	3319150	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3319150C>T	uc003ggw.2	+	2	2157	c.1253C>T	c.(1252-1254)ACC>ATC	p.T418I	RGS12_uc003ggu.2_Missense_Mutation_p.T418I|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.T418I|RGS12_uc003ggx.1_Missense_Mutation_p.T418I	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	418						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		AACAACAGCACCAGCAGCAAC	0.617													31	74					0	0	1	0	0
RGS12	6002	broad.mit.edu	37	4	3319755	3319755	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3319755C>T	uc003ggw.2	+	2	2762	c.1858C>T	c.(1858-1860)CGA>TGA	p.R620*	RGS12_uc003ggu.2_Nonsense_Mutation_p.R620*|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Nonsense_Mutation_p.R620*|RGS12_uc003ggx.1_Nonsense_Mutation_p.R620*	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	620						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TCGAAATGTTCGAAAGACTAA	0.582													62	117					0	0	1	0	0
RGS12	6002	broad.mit.edu	37	4	3424212	3424212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3424212C>T	uc003ggw.2	+	11	3852	c.2948C>T	c.(2947-2949)TCC>TTC	p.S983F	RGS12_uc003ggv.2_Missense_Mutation_p.S983F|RGS12_uc003ggy.1_Missense_Mutation_p.S381F|RGS12_uc003ggz.2_Missense_Mutation_p.S335F|RGS12_uc010icu.1_Missense_Mutation_p.S182F|RGS12_uc011bvs.1_Missense_Mutation_p.S325F|RGS12_uc003gha.2_Missense_Mutation_p.S325F|RGS12_uc010icv.2_Missense_Mutation_p.S182F|RGS12_uc003ghb.2_Missense_Mutation_p.S182F	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	983	RBD 1.					condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GCGGGCTTCTCCATCAAAGAC	0.632													14	41					0	0	1	0	0
RGS12	6002	broad.mit.edu	37	4	3432637	3432637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3432637C>T	uc003ggw.2	+	17	4973	c.4069C>T	c.(4069-4071)CCG>TCG	p.P1357S	RGS12_uc003ggv.2_Missense_Mutation_p.P1357S|RGS12_uc003ggy.1_3'UTR|RGS12_uc003ggz.2_Missense_Mutation_p.P709S|RGS12_uc011bvs.1_3'UTR|RGS12_uc003gha.2_Missense_Mutation_p.P699S|RGS12_uc010icv.2_Missense_Mutation_p.P556S	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	1357						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CACCTTGCTGCCGCCGCCCTC	0.667													14	34					0	0	1	0	0
HGFAC	3083	broad.mit.edu	37	4	3445789	3445789	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3445789G>A	uc003ghc.2	+	5	502	c.499G>A	c.(499-501)GGC>AGC	p.G167S	HGFAC_uc010icw.2_Missense_Mutation_p.G167S	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	167	EGF-like 1.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CTGTGCCTCCGGCCCCTGCCT	0.662													27	50					0	0	1	0	0
LRPAP1	4043	broad.mit.edu	37	4	3516553	3516553	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3516553C>T	uc003ghi.2	-	7	1022	c.937G>A	c.(937-939)GAC>AAC	p.D313N		NM_002337	NP_002328	P30533	AMRP_HUMAN	low density lipoprotein receptor-related protein	313	LDL receptor binding (Potential).				negative regulation of protein binding|negative regulation of very-low-density lipoprotein particle clearance|protein folding|vesicle-mediated transport	cell surface|integral to membrane|plasma membrane	asialoglycoprotein receptor activity|heparin binding|low-density lipoprotein particle receptor binding|receptor antagonist activity|unfolded protein binding|very-low-density lipoprotein particle receptor binding			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.165)		CGCTCGCCGTCGCCCACGCTC	0.647													19	86					0	0	1	0	0
ADRA2C	152	broad.mit.edu	37	4	3769561	3769561	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3769561G>A	uc003ghm.2	+	1	1266	c.1228G>A	c.(1228-1230)GAG>AAG	p.E410K	ADRA2C_uc010icx.2_Intron	NM_000683	NP_000674	P18825	ADA2C_HUMAN	alpha-2C-adrenergic receptor	410	Extracellular (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation|regulation of insulin secretion	endosome|integral to plasma membrane	alpha-2A adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|protein heterodimerization activity|protein homodimerization activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)	Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	CATCTGCCGCGAGGCCTGCCA	0.592													18	26					0	0	1	0	0
LOC348926	348926	broad.mit.edu	37	4	3949503	3949503	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3949503G>A	uc011bvu.1	-	5		c.832C>T			LOC348926_uc003ghn.2_RNA	NR_024253				Homo sapiens hypothetical protein LOC348926, mRNA (cDNA clone IMAGE:4546485), partial cds.												0						GGACGGCAGAGAGCTGACAGA	0.607													4	36					0	0	1	0	0
LOC348926	348926	broad.mit.edu	37	4	3949556	3949556	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:3949556G>A	uc011bvu.1	-	5		c.779C>T			LOC348926_uc003ghn.2_RNA	NR_024253				Homo sapiens hypothetical protein LOC348926, mRNA (cDNA clone IMAGE:4546485), partial cds.												0						GTCACCCTGGGGCCGTCTAAG	0.602													8	54					0	0	1	0	0
OTOP1	133060	broad.mit.edu	37	4	4199219	4199219	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:4199219G>A	uc003ghp.1	-	5	1372	c.1342C>T	c.(1342-1344)CAC>TAC	p.H448Y		NM_177998	NP_819056	Q7RTM1	OTOP1_HUMAN	otopetrin 1	448					biomineral tissue development	extracellular space|integral to membrane				ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GGCTCTCGGTGAATGGATTCA	0.547													22	96					0	0	1	0	0
OTOP1	133060	broad.mit.edu	37	4	4199453	4199453	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:4199453G>A	uc003ghp.1	-	5	1138	c.1108C>T	c.(1108-1110)CGG>TGG	p.R370W		NM_177998	NP_819056	Q7RTM1	OTOP1_HUMAN	otopetrin 1	370					biomineral tissue development	extracellular space|integral to membrane		p.R370Q(1)		ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CTGTAAATCCGGATTCCAGCC	0.582													31	68					0	0	1	0	0
CYTL1	54360	broad.mit.edu	37	4	5021056	5021056	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:5021056G>A	uc003gig.2	-	1	142	c.117C>T	c.(115-117)ACC>ACT	p.T39T		NM_018659	NP_061129	Q9NRR1	CYTL1_HUMAN	cytokine-like 1 precursor	39					signal transduction	extracellular space|soluble fraction	receptor binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.164)		TGAAGTCGCGGGTGATCTCCT	0.692													6	14					0	0	1	0	0
EVC	2121	broad.mit.edu	37	4	5731072	5731072	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:5731072C>T	uc003gil.1	+	3	523	c.339C>T	c.(337-339)TTC>TTT	p.F113F	EVC_uc003gim.1_RNA	NM_153717	NP_714928	P57679	EVC_HUMAN	Ellis van Creveld syndrome protein	113					muscle organ development	integral to membrane				ovary(1)|skin(1)	2		Myeloproliferative disorder(84;0.117)				TCACAGCATTCGCCCTGAAGG	0.483													7	85					0	0	1	0	0
CRMP1	1400	broad.mit.edu	37	4	5853187	5853187	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:5853187G>A	uc003gip.2	-	6	589	c.488C>T	c.(487-489)TCC>TTC	p.S163F	CRMP1_uc003gin.1_Missense_Mutation_p.S75F|CRMP1_uc003giq.2_Missense_Mutation_p.S163F|CRMP1_uc003gir.2_Missense_Mutation_p.S158F|CRMP1_uc003gis.2_Missense_Mutation_p.S277F	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	163					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		GACTTGGAAGGAATTGACGCC	0.438													61	156					0	0	1	0	0
CRMP1	1400	broad.mit.edu	37	4	5868478	5868478	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:5868478G>A	uc003gip.2	-	3	146	c.45C>T	c.(43-45)GAC>GAT	p.D15D	CRMP1_uc003gin.1_5'UTR|CRMP1_uc003giq.2_Silent_p.D15D|CRMP1_uc003gir.2_Silent_p.D10D|CRMP1_uc003gis.2_Silent_p.D129D	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	15					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		TGAGGAGTCGGTCACTCTGCA	0.368													14	51					0	0	1	0	0
C4orf50	389197	broad.mit.edu	37	4	5961342	5961342	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:5961342G>A	uc003git.1	-	7	681	c.591C>T	c.(589-591)TCC>TCT	p.S197S		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	197										pancreas(2)|breast(1)	3						TGGACACCAAGGACAGAGGGA	0.527													8	33					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6051600	6051600	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6051600C>T	uc010idb.1	-	15	2395	c.1909_splice	c.e15-1	p.D637_splice	JAKMIP1_uc010idc.1_Splice_Site_p.D452_splice|JAKMIP1_uc010idd.1_Intron	NM_001099433	NP_001092903	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein						protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CATTCACATCCTGGAAGAGAT	0.443													9	21					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6055729	6055729	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6055729G>A	uc003giu.3	-	13	2130	c.1854C>T	c.(1852-1854)CTC>CTT	p.L618L	JAKMIP1_uc010idb.1_Intron|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Intron|JAKMIP1_uc011bwc.1_Silent_p.L453L|JAKMIP1_uc003giv.3_Silent_p.L618L|JAKMIP1_uc010ide.2_3'UTR	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	618	Mediates interaction with TYK2 and GABBR1.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TGGGTTCAAAGAGAATGTCTG	0.348													44	147					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6055780	6055780	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6055780G>A	uc003giu.3	-	13	2079	c.1803C>T	c.(1801-1803)CTC>CTT	p.L601L	JAKMIP1_uc010idb.1_Silent_p.L601L|JAKMIP1_uc010idc.1_Silent_p.L416L|JAKMIP1_uc010idd.1_Intron|JAKMIP1_uc011bwc.1_Silent_p.L436L|JAKMIP1_uc003giv.3_Silent_p.L601L|JAKMIP1_uc010ide.2_3'UTR	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	601	Mediates interaction with TYK2 and GABBR1.|Potential.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CTCTTACTTCGAGTTCTAGCA	0.403													65	162					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6062186	6062186	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6062186C>T	uc003giu.3	-	11	1885	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K	JAKMIP1_uc010idb.1_Missense_Mutation_p.E537K|JAKMIP1_uc010idc.1_Missense_Mutation_p.E352K|JAKMIP1_uc010idd.1_Intron|JAKMIP1_uc011bwc.1_Missense_Mutation_p.E372K|JAKMIP1_uc003giv.3_Missense_Mutation_p.E537K|JAKMIP1_uc010ide.2_Missense_Mutation_p.E537K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	537	Mediates interaction with TYK2 and GABBR1.|Potential.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TCCAAATCTTCGATTTTGGCC	0.532													62	118					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6062203	6062203	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6062203C>T	uc003giu.3	-	11	1868	c.1592G>A	c.(1591-1593)AGG>AAG	p.R531K	JAKMIP1_uc010idb.1_Missense_Mutation_p.R531K|JAKMIP1_uc010idc.1_Missense_Mutation_p.R346K|JAKMIP1_uc010idd.1_Intron|JAKMIP1_uc011bwc.1_Missense_Mutation_p.R366K|JAKMIP1_uc003giv.3_Missense_Mutation_p.R531K|JAKMIP1_uc010ide.2_Missense_Mutation_p.R531K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	531	Mediates interaction with TYK2 and GABBR1.|Potential.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GGCCTGACACCTCAGCAGATC	0.527													37	129					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6064099	6064099	+	Silent	SNP	G	A	A	rs149678000	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6064099G>A	uc003giu.3	-	10	1776	c.1500C>T	c.(1498-1500)CGC>CGT	p.R500R	JAKMIP1_uc010idb.1_Silent_p.R500R|JAKMIP1_uc010idc.1_Silent_p.R315R|JAKMIP1_uc010idd.1_Intron|JAKMIP1_uc011bwc.1_Silent_p.R335R|JAKMIP1_uc003giv.3_Silent_p.R500R|JAKMIP1_uc010ide.2_Silent_p.R500R	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	500	Mediates interaction with TYK2 and GABBR1.|Potential.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GGGCGTAGGCGCGTTGCAGGG	0.642													26	72					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6064119	6064119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6064119C>T	uc003giu.3	-	10	1756	c.1480G>A	c.(1480-1482)GAG>AAG	p.E494K	JAKMIP1_uc010idb.1_Missense_Mutation_p.E494K|JAKMIP1_uc010idc.1_Missense_Mutation_p.E309K|JAKMIP1_uc010idd.1_Missense_Mutation_p.E494K|JAKMIP1_uc011bwc.1_Missense_Mutation_p.E329K|JAKMIP1_uc003giv.3_Missense_Mutation_p.E494K|JAKMIP1_uc010ide.2_Missense_Mutation_p.E494K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	494	Mediates interaction with TYK2 and GABBR1.|Potential.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GCCTGGTACTCCCGGGTCAGC	0.587													26	74					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6081974	6081974	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6081974C>T	uc003giu.3	-	7	1443	c.1167G>A	c.(1165-1167)ACG>ACA	p.T389T	JAKMIP1_uc010idb.1_Silent_p.T389T|JAKMIP1_uc010idc.1_Silent_p.T224T|JAKMIP1_uc010idd.1_Silent_p.T389T|JAKMIP1_uc011bwc.1_Silent_p.T224T|JAKMIP1_uc003giv.3_Silent_p.T389T|JAKMIP1_uc010ide.2_Silent_p.T389T	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	389	Mediates interaction with TYK2 and GABBR1.|Potential.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GCTCATCCCTCGTCAGGCTGA	0.582													12	40					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6083359	6083359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6083359G>A	uc003giu.3	-	6	1354	c.1078C>T	c.(1078-1080)CTC>TTC	p.L360F	JAKMIP1_uc010idb.1_Missense_Mutation_p.L360F|JAKMIP1_uc010idc.1_Missense_Mutation_p.L195F|JAKMIP1_uc010idd.1_Missense_Mutation_p.L360F|JAKMIP1_uc011bwc.1_Missense_Mutation_p.L195F|JAKMIP1_uc003giv.3_Missense_Mutation_p.L360F|JAKMIP1_uc010ide.2_Missense_Mutation_p.L360F	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	360	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TCCCGCGTGAGGTTCTTGATT	0.532													26	80					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6087174	6087174	+	Silent	SNP	C	T	T	rs61753516		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6087174C>T	uc003giu.3	-	4	1083	c.807G>A	c.(805-807)GGG>GGA	p.G269G	JAKMIP1_uc010idb.1_Silent_p.G269G|JAKMIP1_uc010idc.1_Silent_p.G104G|JAKMIP1_uc010idd.1_Silent_p.G269G|JAKMIP1_uc011bwc.1_Silent_p.G104G|JAKMIP1_uc003giv.3_Silent_p.G269G|JAKMIP1_uc010ide.2_Silent_p.G269G	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	269	Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding	p.G269R(1)		large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CCACCATGTCCCCGATCCCGG	0.607													11	41					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6087196	6087196	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6087196C>T	uc003giu.3	-	4	1061	c.785G>A	c.(784-786)AGA>AAA	p.R262K	JAKMIP1_uc010idb.1_Missense_Mutation_p.R262K|JAKMIP1_uc010idc.1_Missense_Mutation_p.R97K|JAKMIP1_uc010idd.1_Missense_Mutation_p.R262K|JAKMIP1_uc011bwc.1_Missense_Mutation_p.R97K|JAKMIP1_uc003giv.3_Missense_Mutation_p.R262K|JAKMIP1_uc010ide.2_Missense_Mutation_p.R262K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	262	Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CGGGAGCTCTCTCTTTGGACT	0.627													19	62					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6107481	6107481	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6107481C>T	uc003giu.3	-	3	619	c.343G>A	c.(343-345)GCC>ACC	p.A115T	JAKMIP1_uc010idb.1_Missense_Mutation_p.A115T|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Missense_Mutation_p.A115T|JAKMIP1_uc011bwc.1_Intron|JAKMIP1_uc003giv.3_Missense_Mutation_p.A115T|JAKMIP1_uc010ide.2_Missense_Mutation_p.A115T	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	115	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TTCAGCGTGGCCTGCAGCCGC	0.726													3	17					0	0	1	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6325221	6325221	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6325221G>A	uc003gjc.2	-	9	1522	c.1152C>T	c.(1150-1152)CCC>CCT	p.P384P	PPP2R2C_uc003gjb.2_Silent_p.P367P|PPP2R2C_uc011bwd.1_Silent_p.P377P|PPP2R2C_uc011bwe.1_Silent_p.P377P|PPP2R2C_uc003gja.2_Silent_p.P384P	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	384					signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						GCACAGCCCGGGGCTTGCTGC	0.617													9	44					0	0	1	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6374257	6374257	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6374257C>T	uc003gjc.2	-	5	988	c.618G>A	c.(616-618)AGG>AGA	p.R206R	PPP2R2C_uc003gjb.2_Silent_p.R189R|PPP2R2C_uc011bwd.1_Silent_p.R199R|PPP2R2C_uc011bwe.1_Silent_p.R199R|PPP2R2C_uc003gja.2_Silent_p.R206R|PPP2R2C_uc003gjd.1_Silent_p.R294R	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	206	WD 3.				signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TACTGAAGCTCCTGTCGGTGA	0.577													27	57					0	0	1	0	0
S100P	6286	broad.mit.edu	37	4	6695749	6695749	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6695749G>A	uc003gjl.2	+	1	184	c.90G>A	c.(88-90)AAG>AAA	p.K30K		NM_005980	NP_005971	P25815	S100P_HUMAN	S100 calcium binding protein P	30	EF-hand 1.|1; low affinity.				endothelial cell migration	cytoplasm|nucleus	calcium ion binding|calcium-dependent protein binding|magnesium ion binding				0		Myeloproliferative disorder(84;0.0255)		Colorectal(103;0.011)	Cromoglicate(DB01003)	CCCTGACCAAGGGGGAGCTCA	0.597													20	40					0	0	1	0	0
KIAA0232	9778	broad.mit.edu	37	4	6862869	6862869	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6862869G>A	uc003gjr.3	+	7	1223	c.760G>A	c.(760-762)GAG>AAG	p.E254K	KIAA0232_uc003gjq.3_Missense_Mutation_p.E254K	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	254							ATP binding			ovary(2)	2						AAGCAAAAACGAGAAGGAAAA	0.428													12	72					0	0	1	0	0
TBC1D14	57533	broad.mit.edu	37	4	6925673	6925673	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:6925673C>T	uc011bwg.1	+	2	636	c.557C>T	c.(556-558)TCC>TTC	p.S186F	TBC1D14_uc003gjs.3_Missense_Mutation_p.S186F	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	186						intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						ACGAGCAGCTCCAGTGCCATT	0.552													11	28					0	0	1	0	0
TBC1D14	57533	broad.mit.edu	37	4	7012458	7012458	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:7012458C>T	uc011bwg.1	+	11	1676	c.1597C>T	c.(1597-1599)CTT>TTT	p.L533F	TBC1D14_uc003gjs.3_Missense_Mutation_p.L533F|TBC1D14_uc010idh.2_Missense_Mutation_p.L253F|TBC1D14_uc011bwh.1_Missense_Mutation_p.L180F|TBC1D14_uc003gju.3_Missense_Mutation_p.L24F	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	533	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						CTTTTCTAACCTTCTGAATAA	0.458													47	123					0	0	1	0	0
TBC1D14	57533	broad.mit.edu	37	4	7026910	7026910	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:7026910C>T	uc011bwg.1	+	13	2016	c.1937C>T	c.(1936-1938)CCC>CTC	p.P646L	TBC1D14_uc003gjs.3_Missense_Mutation_p.P646L|TBC1D14_uc010idh.2_Missense_Mutation_p.P366L|TBC1D14_uc011bwh.1_Missense_Mutation_p.P293L|TBC1D14_uc003gju.3_Missense_Mutation_p.P137L	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	646						intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						ACCCGGCTGCCCGAGGACCTG	0.597													29	55					0	0	1	0	0
SORCS2	57537	broad.mit.edu	37	4	7714547	7714547	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:7714547G>A	uc003gkb.3	+	15	1956	c.1956G>A	c.(1954-1956)GAG>GAA	p.E652E	SORCS2_uc011bwi.1_Silent_p.E480E	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	652	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						GCGGCGAGGAGGACTACAGCT	0.637													11	22					0	0	1	0	0
AFAP1	60312	broad.mit.edu	37	4	7770734	7770734	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:7770734G>A	uc003gkg.1	-	16	2276	c.2003C>T	c.(2002-2004)TCT>TTT	p.S668F	AFAP1_uc011bwk.1_Missense_Mutation_p.S752F|LOC84740_uc003gkd.3_Intron	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	668						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						GAACACTGGAGACTTAACGGA	0.547													36	121					0	0	1	0	0
AFAP1	60312	broad.mit.edu	37	4	7802241	7802241	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:7802241G>A	uc003gkg.1	-	10	1467	c.1194C>T	c.(1192-1194)ATC>ATT	p.I398I	AFAP1_uc011bwk.1_Silent_p.I398I	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	398	PH 2.					actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						CCAAACCCGGGATCACCTCGC	0.542													21	33					0	0	1	0	0
AFAP1	60312	broad.mit.edu	37	4	7811414	7811414	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:7811414G>A	uc003gkg.1	-	9	1254	c.981C>T	c.(979-981)ATC>ATT	p.I327I	AFAP1_uc011bwk.1_Silent_p.I327I	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	327						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						CCAGACTGATGATCTTGGTGA	0.498													22	40					0	0	1	0	0
ABLIM2	84448	broad.mit.edu	37	4	8009922	8009922	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:8009922C>T	uc003gko.2	-	15	1523	c.1380G>A	c.(1378-1380)AAG>AAA	p.K460K	ABLIM2_uc003gkk.2_Silent_p.K124K|ABLIM2_uc003gkl.2_Silent_p.K188K|ABLIM2_uc003gkj.3_Silent_p.K494K|ABLIM2_uc003gkm.3_Silent_p.K408K|ABLIM2_uc003gkp.2_Silent_p.K419K|ABLIM2_uc003gkq.2_Silent_p.K460K|ABLIM2_uc003gkr.2_Silent_p.K409K|ABLIM2_uc003gks.3_Silent_p.K420K|MIR95_hsa-mir-95|MI0000097_5'Flank	NM_001130084	NP_001123556	Q6H8Q1	ABLM2_HUMAN	actin binding LIM protein family, member 2	460					axon guidance|cytoskeleton organization	actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus	actin binding|zinc ion binding			pancreas(3)	3						GCCAGCTGCTCTTCTGCTGAA	0.512													13	68					0	0	1	0	0
SH3TC1	54436	broad.mit.edu	37	4	8214429	8214429	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:8214429C>T	uc003gkv.3	+	4	350	c.249C>T	c.(247-249)GAC>GAT	p.D83D	SH3TC1_uc003gkw.3_Silent_p.D7D|SH3TC1_uc003gkx.3_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	83							binding			large_intestine(2)|pancreas(1)	3						CCCCTCCAGACCTGACCCTGC	0.652													11	15					0	0	1	0	0
HTRA3	94031	broad.mit.edu	37	4	8305930	8305930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:8305930G>A	uc003gla.2	+	8	1324	c.1120G>A	c.(1120-1122)GCC>ACC	p.A374T		NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	374	PDZ.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						TGAGCTGAAGGCCAGCAACCC	0.587													12	35					0	0	1	0	0
HTRA3	94031	broad.mit.edu	37	4	8307825	8307825	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:8307825G>A	uc003gla.2	+	9	1528	c.1324G>A	c.(1324-1326)GAC>AAC	p.D442N		NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	442	PDZ.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						GGGGAACGACGACCTCCTCTT	0.657													9	43					0	0	1	0	0
GPR78	27201	broad.mit.edu	37	4	8583216	8583216	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:8583216C>T	uc003glk.2	+	1	926	c.507C>T	c.(505-507)TTC>TTT	p.F169F	CPZ_uc003gll.2_RNA	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	169	Helical; Name=5; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						GTCCGCGCTTCGCAGCCTTCA	0.697													4	8					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8602908	8602908	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:8602908C>T	uc003glm.2	+	3	306	c.180C>T	c.(178-180)ACC>ACT	p.T60T	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_5'UTR|CPZ_uc003glo.2_Silent_p.T49T|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	60	FZ.				proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						ACCACACCACCTTCCCCAACC	0.642													16	49					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8608525	8608525	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:8608525G>A	uc003glm.2	+	6	1094	c.968G>A	c.(967-969)CGA>CAA	p.R323Q	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.R186Q|CPZ_uc003glo.2_Missense_Mutation_p.R312Q|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	323					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						GATCTGAACCGAAATTTCCCG	0.647													25	53					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8621299	8621299	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:8621299C>T	uc003glm.2	+	11	2040	c.1914C>T	c.(1912-1914)TTC>TTT	p.F638F	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Silent_p.F501F|CPZ_uc003glo.2_Silent_p.F627F|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	638					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						GGTCCTACTTCACATCGCTGA	0.701													9	33					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9784037	9784037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:9784037C>T	uc003gmb.3	+	1	780	c.384C>T	c.(382-384)ATC>ATT	p.I128I		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	128	Helical; Name=3; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CTGCCTCCATCCTGAACCTGT	0.622													6	40					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9784321	9784321	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:9784321G>A	uc003gmb.3	+	1	1064	c.668G>A	c.(667-669)CGA>CAA	p.R223Q		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	223	Extracellular (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	AGCCTGAATCGAACCTACGCC	0.582													31	91					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9784541	9784541	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:9784541G>A	uc003gmb.3	+	1	1284	c.888G>A	c.(886-888)AAG>AAA	p.K296K		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	296	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	AGGTTCTCAAGACCCTGTCGG	0.627													11	99					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9784685	9784685	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:9784685C>T	uc003gmb.3	+	1	1428	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	344	Helical; Name=7; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TCGACGTCTTCGTCTGGTTCG	0.592													19	138					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9784959	9784959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:9784959C>T	uc003gmb.3	+	1	1702	c.1306C>T	c.(1306-1308)CGC>TGC	p.R436C		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	436	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TCCTTTCGATCGCATGTTCCA	0.557													28	73					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9784984	9784985	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:9784984_9784985CC>TT	uc003gmb.3	+	1	1727_1728	c.1331_1332CC>TT	c.(1330-1332)TCC>TTT	p.S444F		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	444	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TATCAGACGTCCCCAGATGGTG	0.545													30	55					0	0	1	0	0
SLC2A9	56606	broad.mit.edu	37	4	9943555	9943555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:9943555C>T	uc003gmc.2	-	6	857	c.796G>A	c.(796-798)GAG>AAG	p.E266K	SLC2A9_uc003gmd.2_Missense_Mutation_p.E237K	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	266	Cytoplasmic (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						GCTCTTGCCTCGTTGTGCTTC	0.582													16	28					0	0	1	0	0
SLC2A9	56606	broad.mit.edu	37	4	9998483	9998483	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:9998483G>A	uc003gmc.2	-	3	393	c.332C>T	c.(331-333)TCT>TTT	p.S111F	SLC2A9_uc003gmd.2_Missense_Mutation_p.S82F	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	111	Helical; Name=2; (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						CACAGTCACAGACCAGAGCAA	0.453													35	56					0	0	1	0	0
WDR1	9948	broad.mit.edu	37	4	10079019	10079019	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:10079019G>A	uc003gmf.2	-	14	1906	c.1623C>T	c.(1621-1623)TCC>TCT	p.S541S	WDR1_uc003gmg.2_Silent_p.S401S|WDR1_uc010idm.2_RNA	NM_017491	NP_059830	O75083	WDR1_HUMAN	WD repeat-containing protein 1 isoform 1	541	WD 10.				platelet activation|platelet degranulation|sensory perception of sound	cytoskeleton|cytosol|extracellular region	actin binding			ovary(2)|pancreas(1)	3				STAD - Stomach adenocarcinoma(129;0.000703)|Colorectal(103;0.0057)|LUSC - Lung squamous cell carcinoma(721;0.0232)		CATTGTCTGGGGACCAGGCCA	0.507													22	88					0	0	1	0	0
WDR1	9948	broad.mit.edu	37	4	10084736	10084736	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:10084736G>A	uc003gmf.2	-	10	1389	c.1106C>T	c.(1105-1107)TCC>TTC	p.S369F	WDR1_uc003gmg.2_Missense_Mutation_p.S229F|WDR1_uc010idm.2_RNA	NM_017491	NP_059830	O75083	WDR1_HUMAN	WD repeat-containing protein 1 isoform 1	369	WD 7.				platelet activation|platelet degranulation|sensory perception of sound	cytoskeleton|cytosol|extracellular region	actin binding			ovary(2)|pancreas(1)	3				STAD - Stomach adenocarcinoma(129;0.000703)|Colorectal(103;0.0057)|LUSC - Lung squamous cell carcinoma(721;0.0232)		GGTCATCCTGGACACCTGGTT	0.602													13	27					0	0	1	0	0
ZNF518B	85460	broad.mit.edu	37	4	10446015	10446015	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:10446015G>A	uc003gmn.2	-	3	2425	c.1938C>T	c.(1936-1938)GTC>GTT	p.V646V		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	646					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						TGCCCTCGGGGACATTTTCAG	0.408													50	147					0	0	1	0	0
ZNF518B	85460	broad.mit.edu	37	4	10446685	10446685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:10446685G>A	uc003gmn.2	-	3	1755	c.1268C>T	c.(1267-1269)CCT>CTT	p.P423L		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	423					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						CTGAACTGAAGGTTGAAAACT	0.343													57	129					0	0	1	0	0
ZNF518B	85460	broad.mit.edu	37	4	10447742	10447742	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:10447742G>A	uc003gmn.2	-	3	698	c.211C>T	c.(211-213)CTT>TTT	p.L71F		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	71					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						AAATCTTGAAGAGAGATCTTG	0.463													53	151					0	0	1	0	0
CLNK	116449	broad.mit.edu	37	4	10515185	10515185	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:10515185C>T	uc003gmo.3	-	16	946	c.809G>A	c.(808-810)AGA>AAA	p.R270K		NM_052964	NP_443196	Q7Z7G1	CLNK_HUMAN	mast cell immunoreceptor signal transducer	270					immune response|intracellular signal transduction	intracellular	SH3/SH2 adaptor activity			ovary(1)	1						AGGCTGGCATCTCTGAGGAGA	0.493													6	16					0	0	1	0	0
CLNK	116449	broad.mit.edu	37	4	10669536	10669536	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:10669536C>T	uc003gmo.3	-	2	96	c.-41_splice	c.e2-1			NM_052964	NP_443196	Q7Z7G1	CLNK_HUMAN	mast cell immunoreceptor signal transducer						immune response|intracellular signal transduction	intracellular	SH3/SH2 adaptor activity			ovary(1)	1						TCAATTCAGCCTGTGGAAACA	0.478													4	18					0	0	1	0	0
HS3ST1	9957	broad.mit.edu	37	4	11401213	11401213	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:11401213G>A	uc003gmq.2	-	2	740	c.417C>T	c.(415-417)TCC>TCT	p.S139S		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	139						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GCAGCCGGATGGACGGGTTCA	0.587													20	38					0	0	1	0	0
C1QTNF7	114905	broad.mit.edu	37	4	15444301	15444301	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:15444301T>A	uc011bxb.1	+	3	975	c.748T>A	c.(748-750)TTC>ATC	p.F250I	C1QTNF7_uc003gno.2_Missense_Mutation_p.F257I|C1QTNF7_uc003gnp.2_Missense_Mutation_p.F250I	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	250	C1q.					collagen					0						GCTGGAGATTTTCTTCACAGA	0.493													54	94					0	0	1	0	0
CD38	952	broad.mit.edu	37	4	15780251	15780251	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:15780251G>A	uc011bxc.1	+	1	321	c.214G>A	c.(214-216)GAA>AAA	p.E72K	CD38_uc003goj.1_Missense_Mutation_p.E72K|CD38_uc003gol.1_Missense_Mutation_p.E72K	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	72	Extracellular (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						CAAGTACACTGAAATTCATCC	0.692													22	37					0	0	1	0	0
CD38	952	broad.mit.edu	37	4	15826515	15826515	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:15826515G>A	uc011bxc.1	+	3	482	c.375G>A	c.(373-375)TGG>TGA	p.W125*	CD38_uc003goj.1_Nonsense_Mutation_p.W125*|CD38_uc003gol.1_Nonsense_Mutation_p.W125*	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	125	Extracellular (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						TTCTTCTTTGGAGCAGAATAA	0.318													19	86					0	0	1	0	0
CD38	952	broad.mit.edu	37	4	15826536	15826536	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:15826536C>T	uc011bxc.1	+	3	503	c.396C>T	c.(394-396)GCC>GCT	p.A132A	CD38_uc003goj.1_Silent_p.A132A|CD38_uc003gol.1_Silent_p.A132A	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	132	Extracellular (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						AAGATCTGGCCCATCAGTTCA	0.363													18	76					0	0	1	0	0
FGFBP1	9982	broad.mit.edu	37	4	15938219	15938219	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:15938219G>A	uc003gom.2	-	2	155	c.37C>T	c.(37-39)CTA>TTA	p.L13L		NM_005130	NP_005121	Q14512	FGFP1_HUMAN	fibroblast growth factor binding protein 1	13					cell-cell signaling|negative regulation of cell proliferation|signal transduction	extracellular space|plasma membrane	heparin binding				0						GCAGCCAGTAGGAGGAAGGAG	0.522													16	90					0	0	1	0	0
PROM1	8842	broad.mit.edu	37	4	16026826	16026826	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:16026826C>T	uc003goo.2	-	5	831	c.619G>A	c.(619-621)GAA>AAA	p.E207K	PROM1_uc003gor.2_Missense_Mutation_p.E207K|PROM1_uc003gos.2_Missense_Mutation_p.E198K|PROM1_uc003got.2_Missense_Mutation_p.E207K|PROM1_uc003gou.2_Missense_Mutation_p.E198K|PROM1_uc003gop.2_Missense_Mutation_p.E198K|PROM1_uc003goq.3_Missense_Mutation_p.E198K|PROM1_uc010iec.1_Missense_Mutation_p.E85K	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	207	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						TCTGGAGTTTCATTCAAGAGA	0.398													52	113					0	0	1	0	0
LDB2	9079	broad.mit.edu	37	4	16504332	16504332	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:16504332C>T	uc003goz.2	-	8	1372	c.1056G>A	c.(1054-1056)TGG>TGA	p.W352*	LDB2_uc003gpa.2_3'UTR|LDB2_uc003gpb.2_Nonsense_Mutation_p.W350*|LDB2_uc011bxh.1_Nonsense_Mutation_p.W324*|LDB2_uc010iee.2_3'UTR|LDB2_uc003goy.2_Nonsense_Mutation_p.W227*|LDB2_uc011bxi.1_3'UTR	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	352							LIM domain binding|transcription cofactor activity				0						GTTTACTGTTCCACGGGCTGT	0.522													56	160					0	0	1	0	0
LDB2	9079	broad.mit.edu	37	4	16760838	16760838	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:16760838C>T	uc003goz.2	-	2	494	c.178G>A	c.(178-180)GAA>AAA	p.E60K	LDB2_uc003gpa.2_Missense_Mutation_p.E60K|LDB2_uc003gpb.2_Missense_Mutation_p.E60K|LDB2_uc011bxh.1_Missense_Mutation_p.E60K|LDB2_uc010iee.2_Missense_Mutation_p.E60K	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	60							LIM domain binding|transcription cofactor activity				0						GCGTCATCTTCAAAAAATTCA	0.378													28	74					0	0	1	0	0
CLRN2	645104	broad.mit.edu	37	4	17528621	17528621	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:17528621G>A	uc003gpg.1	+	3	717	c.615G>A	c.(613-615)GTG>GTA	p.V205V		NM_001079827	NP_001073296	A0PK11	CLRN2_HUMAN	clarin 2	205	Helical; (Potential).					integral to membrane					0						ACTTGGTCGTGGTGGCGATCA	0.507													30	80					0	0	1	0	0
DCAF16	54876	broad.mit.edu	37	4	17805519	17805519	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:17805519A>C	uc003gpn.2	-	3	1307	c.246T>G	c.(244-246)GAT>GAG	p.D82E	DCAF16_uc003gpo.2_RNA	NM_017741	NP_060211	Q9NXF7	DCA16_HUMAN	DDB1 and CUL4 associated factor 16	82						CUL4 RING ubiquitin ligase complex				ovary(1)	1						GTGTGCTTGGATCCAACAGTT	0.438													19	112					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20482391	20482391	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:20482391C>T	uc003gpr.1	+	6	724	c.520C>T	c.(520-522)CTC>TTC	p.L174F	SLIT2_uc003gps.1_Missense_Mutation_p.L174F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	174					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						ATTCAGGGCTCTCCGGGACCT	0.448													27	111					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20512748	20512748	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:20512748C>T	uc003gpr.1	+	11	1250	c.1046C>T	c.(1045-1047)TCT>TTT	p.S349F	SLIT2_uc003gps.1_Missense_Mutation_p.S349F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	349	LRR 9.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GGACTACGCTCTCTGAATTCA	0.383													22	68					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20525739	20525740	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:20525739_20525740CC>TT	uc003gpr.1	+	14	1581_1582	c.1377_1378CC>TT	c.(1375-1380)AGCCCC>AGTTCC	p.P460S	SLIT2_uc003gps.1_Missense_Mutation_p.P460S	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	460	LRRCT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GTTGCACCAGCCCCCGCCGCCT	0.485													47	197					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20552473	20552473	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:20552473C>T	uc003gpr.1	+	25	2717	c.2513C>T	c.(2512-2514)TCT>TTT	p.S838F	SLIT2_uc003gps.1_Missense_Mutation_p.S830F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	838	LRR 20.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AATGACATTTCTGTTGTGCCT	0.343													21	67					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20555588	20555588	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:20555588C>T	uc003gpr.1	+	26	2926	c.2722C>T	c.(2722-2724)CAA>TAA	p.Q908*	SLIT2_uc003gps.1_Nonsense_Mutation_p.Q900*	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	908	LRRCT 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						ATTTACCTGTCAAGGTATGGT	0.338													30	71					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20618815	20618815	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:20618815G>A	uc003gpr.1	+	35	4334	c.4130G>A	c.(4129-4131)GGA>GAA	p.G1377E	SLIT2_uc003gps.1_Missense_Mutation_p.G1369E	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1377					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CCTTGCCTTGGAAATAAGTAA	0.507													9	59					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20620505	20620505	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:20620505G>A	uc003gpr.1	+	37	4667	c.4463G>A	c.(4462-4464)GGA>GAA	p.G1488E	SLIT2_uc003gps.1_Missense_Mutation_p.G1480E	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1488	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GGGTGTGCAGGAGGGCAGTGC	0.532													20	33					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20620576	20620576	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:20620576T>C	uc003gpr.1	+	37	4738	c.4534T>C	c.(4534-4536)TTT>CTT	p.F1512L	SLIT2_uc003gps.1_Missense_Mutation_p.F1504L	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1512	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CGGCTCCTCCTTTGTGGACGA	0.547													22	32					0	0	1	0	0
KCNIP4	80333	broad.mit.edu	37	4	20734318	20734318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:20734318C>T	uc003gqe.2	-	6	661	c.577G>A	c.(577-579)GAA>AAA	p.E193K	KCNIP4_uc003gqf.1_Missense_Mutation_p.E189K|KCNIP4_uc003gqg.1_Missense_Mutation_p.E148K|KCNIP4_uc003gqh.1_Missense_Mutation_p.E185K|KCNIP4_uc003gqi.1_Missense_Mutation_p.E148K|PACRGL_uc003gpu.2_Intron|PACRGL_uc003gpx.3_Intron|PACRGL_uc003gpw.2_Intron|KCNIP4_uc010iel.2_Missense_Mutation_p.E190K|KCNIP4_uc003gqd.3_Missense_Mutation_p.E173K	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	210	EF-hand 4.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				AAAAATGTTTCAACGTGTTGT	0.363													24	47					0	0	1	0	0
KCNIP4	80333	broad.mit.edu	37	4	21698984	21698984	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:21698984G>A	uc003gqh.1	-	1	335	c.77C>T	c.(76-78)TCT>TTT	p.S26F	KCNIP4_uc003gqi.1_Intron	NM_001035003	NP_001030175	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 5	Error:Variant_position_missing_in_Q6PIL6_after_alignment						plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				TGTATGAAGAGAACCTGTTAA	0.348													23	69					0	0	1	0	0
GPR125	166647	broad.mit.edu	37	4	22389807	22389807	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:22389807G>A	uc003gqm.1	-	19	3752	c.3487C>T	c.(3487-3489)CGA>TGA	p.R1163*	GPR125_uc010ieo.1_Nonsense_Mutation_p.R1019*|GPR125_uc003gql.1_Nonsense_Mutation_p.R290*	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	1163	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				ACATTTGTTCGAAACTGAACT	0.448													26	60					0	0	1	0	0
GPR125	166647	broad.mit.edu	37	4	22390168	22390168	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:22390168G>A	uc003gqm.1	-	19	3391	c.3126C>T	c.(3124-3126)TTC>TTT	p.F1042F	GPR125_uc010ieo.1_Silent_p.F898F|GPR125_uc003gql.1_Silent_p.F169F	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	1042	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				GGTGGACCACGAAGAACGCAC	0.473													50	32					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23803392	23803392	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:23803392C>T	uc003gqs.2	-	12	2374	c.2254G>A	c.(2254-2256)GGA>AGA	p.G752R	PPARGC1A_uc003gqt.2_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	752	RRM.				androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TGCTTGCGTCCACAAAAGTAC	0.398													8	49					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23803443	23803443	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:23803443C>T	uc003gqs.2	-	12	2323	c.2203G>A	c.(2203-2205)GGA>AGA	p.G735R	PPARGC1A_uc003gqt.2_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	735	RRM.				androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				AAAGTGTATCCATTTTCAAGA	0.408													4	49					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23803905	23803905	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:23803905C>T	uc003gqs.2	-	11	2203	c.2083G>A	c.(2083-2085)GAC>AAC	p.D695N	PPARGC1A_uc003gqt.2_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	695	RRM.				androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TCAAAACGGTCCCTCAGTTCT	0.458													13	119					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23814665	23814665	+	Missense_Mutation	SNP	G	A	A	rs149856244		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:23814665G>A	uc003gqs.2	-	9	1997	c.1877C>T	c.(1876-1878)TCG>TTG	p.S626L	PPARGC1A_uc003gqt.2_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	626	Arg/Ser-rich.				androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding	p.S626L(1)		ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				GCTGTAGGGCGATCTTGAACG	0.493													64	119					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23815352	23815352	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:23815352C>T	uc003gqs.2	-	8	1874	c.1754G>A	c.(1753-1755)AGG>AAG	p.R585K	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	585	Arg/Ser-rich.				androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TGATCTTGACCTGGAATATGG	0.428													13	51					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23816229	23816229	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:23816229C>T	uc003gqs.2	-	8	998	c.878_splice	c.e8-1	p.G293_splice	PPARGC1A_uc003gqt.2_Splice_Site|PPARGC1A_uc011bxp.1_Intron|PPARGC1A_uc010ier.1_Intron	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor						androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				GGAGTTAGGCCTAAGGCAAAA	0.368													17	39					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23830128	23830128	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:23830128C>T	uc003gqs.2	-	5	772	c.652G>A	c.(652-654)GAT>AAT	p.D218N	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	218					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				GGAGGGTCATCGTTTGTGGTC	0.468													54	170					0	0	1	0	0
LGI2	55203	broad.mit.edu	37	4	25005323	25005324	+	Nonsense_Mutation	DNP	CC	TA	TA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:25005323_25005324CC>TA	uc003grf.2	-	8	1486_1487	c.1387_1388GG>TA	c.(1387-1389)GGG>TAG	p.G463*		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	463	EAR 6.					extracellular region					0		Breast(46;0.173)				GGTCATGGCCCCCCGGGATGGA	0.505													53	186					0	0	1	0	0
LGI2	55203	broad.mit.edu	37	4	25014056	25014056	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:25014056C>T	uc003grf.2	-	7	820	c.721G>A	c.(721-723)GAT>AAT	p.D241N		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	241	EAR 1.					extracellular region					0		Breast(46;0.173)				ACGTACACATCGTTCTTGGAG	0.468													26	84					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25664416	25664416	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:25664416G>A	uc003grr.2	+	3	283	c.202G>A	c.(202-204)GAC>AAC	p.D68N	SLC34A2_uc003grs.2_Missense_Mutation_p.D67N|SLC34A2_uc010iev.2_Missense_Mutation_p.D67N	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	68	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TGAGGTGGATGACCCCTGGAA	0.522													31	79					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25675929	25675929	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:25675929C>T	uc003grr.2	+	11	1309	c.1228C>T	c.(1228-1230)CCC>TCC	p.P410S	SLC34A2_uc003grs.2_Missense_Mutation_p.P409S|SLC34A2_uc010iev.2_Missense_Mutation_p.P409S	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	410	Helical; Name=M5; (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TTTCCCCTTTCCCTTTGCATG	0.597													18	34					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25678098	25678098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:25678098G>A	uc003grr.2	+	13	1881	c.1800G>A	c.(1798-1800)CTG>CTA	p.L600L	SLC34A2_uc003grs.2_Silent_p.L599L|SLC34A2_uc010iev.2_Silent_p.L599L	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	600	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TGCGCTCGCTGAAGCCCTGGG	0.463													30	95					0	0	1	0	0
SEL1L3	23231	broad.mit.edu	37	4	25785868	25785868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:25785868C>T	uc003gru.3	-	14	2414	c.2262G>A	c.(2260-2262)ATG>ATA	p.M754I	SEL1L3_uc003grv.2_Missense_Mutation_p.M161I	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	754	Sel1-like 4.					integral to membrane	binding				0						CTGCTTTCTTCATCAGCTCTA	0.443													80	145					0	0	1	0	0
SEL1L3	23231	broad.mit.edu	37	4	25789932	25789932	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:25789932C>T	uc003gru.3	-	13	2283	c.2131G>A	c.(2131-2133)GAA>AAA	p.E711K	SEL1L3_uc003grv.2_Missense_Mutation_p.E118K	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	711	Sel1-like 3.					integral to membrane	binding				0						ATTGCTGCTTCGGGATTCTTG	0.463													40	115					0	0	1	0	0
SEL1L3	23231	broad.mit.edu	37	4	25834646	25834646	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:25834646G>A	uc003gru.3	-	5	1221	c.1069C>T	c.(1069-1071)CGA>TGA	p.R357*		NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	357						integral to membrane	binding				0						ATATCCAGTCGAAACCACTCC	0.393													29	71					0	0	1	0	0
RBPJ	3516	broad.mit.edu	37	4	26387991	26387991	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:26387991C>T	uc003grx.1	+	3	312	c.76C>T	c.(76-78)CCT>TCT	p.P26S	RBPJ_uc003gry.1_Missense_Mutation_p.P11S|RBPJ_uc003grz.1_Missense_Mutation_p.P26S|RBPJ_uc011bxt.1_Missense_Mutation_p.P26S|RBPJ_uc003gsa.1_Missense_Mutation_p.P12S|RBPJ_uc003gsb.1_Missense_Mutation_p.P13S|RBPJ_uc003gsc.1_Missense_Mutation_p.P12S	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	26					DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				TGGTGAGCGGCCTCCACCTAA	0.279													10	43					0	0	1	0	0
CCKAR	886	broad.mit.edu	37	4	26484791	26484791	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:26484791C>T	uc003gse.1	-	4	894	c.741G>A	c.(739-741)AAG>AAA	p.K247K		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	247	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	TAGCAGACTTCTTCTGGCTAG	0.373													53	140					0	0	1	0	0
TBC1D19	55296	broad.mit.edu	37	4	26719613	26719613	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:26719613C>T	uc003gsf.3	+	14	1283	c.1013C>T	c.(1012-1014)GCC>GTC	p.A338V	TBC1D19_uc010iew.2_Missense_Mutation_p.A338V|TBC1D19_uc011bxu.1_Missense_Mutation_p.A273V	NM_018317	NP_060787	Q8N5T2	TBC19_HUMAN	TBC1 domain family, member 19	338	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			breast(1)	1		Breast(46;0.0503)				TTCAACAGTGCCTCGCCACCA	0.299													33	97					0	0	1	0	0
STIM2	57620	broad.mit.edu	37	4	27009158	27009158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:27009158C>T	uc003gsh.3	+	8	1462	c.1246C>T	c.(1246-1248)CGC>TGC	p.R416C	STIM2_uc003gsg.3_Missense_Mutation_p.R416C|STIM2_uc010iex.2_Missense_Mutation_p.R416C|STIM2_uc010iey.2_Missense_Mutation_p.R40C	NM_020860	NP_065911	Q9P246	STIM2_HUMAN	stromal interaction molecule 2	329	Cytoplasmic (Potential).|Potential.				activation of store-operated calcium channel activity|calcium ion transport|cellular calcium ion homeostasis|negative regulation of calcium ion transport via store-operated calcium channel activity	endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel regulator activity|calcium ion binding|protein binding			central_nervous_system(1)|skin(1)	2		Breast(46;0.0503)				cttcTAGGTTCGCATGGCTCT	0.259													5	43					0	0	1	0	0
STIM2	57620	broad.mit.edu	37	4	27010620	27010620	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:27010620T>A	uc003gsh.3	+	11	1986	c.1770T>A	c.(1768-1770)TTT>TTA	p.F590L	STIM2_uc003gsg.3_Missense_Mutation_p.F582L|STIM2_uc010iex.2_Missense_Mutation_p.F582L|STIM2_uc010iey.2_Missense_Mutation_p.F206L	NM_020860	NP_065911	Q9P246	STIM2_HUMAN	stromal interaction molecule 2	495	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|cellular calcium ion homeostasis|negative regulation of calcium ion transport via store-operated calcium channel activity	endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel regulator activity|calcium ion binding|protein binding			central_nervous_system(1)|skin(1)	2		Breast(46;0.0503)				TGTCACAATTTCCCGGTAAGT	0.418													34	83					0	0	1	0	0
PCDH7	5099	broad.mit.edu	37	4	31144214	31144214	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:31144214C>T	uc011bxx.1	+	3	4495	c.3487C>T	c.(3487-3489)CAG>TAG	p.Q1163*	PCDH7_uc011bxw.1_Nonsense_Mutation_p.Q1116*	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	Error:Variant_position_missing_in_O60245_after_alignment					homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						GAAGAAGAGCCAGCCTAAACT	0.562													48	119					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36069802	36069802	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36069802G>A	uc003gsq.1	-	33	5180	c.4842C>T	c.(4840-4842)CAC>CAT	p.H1614H	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1614					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GCTCCAGGCAGTGGGCCACCA	0.522													27	135					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36093535	36093535	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36093535C>T	uc003gsq.1	-	28	4731	c.4393G>A	c.(4393-4395)GAT>AAT	p.D1465N		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1465	PH 5.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AGAAACCCATCTCGTAAAACA	0.328													23	69					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36109295	36109295	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36109295C>T	uc003gsq.1	-	27	4515	c.4177G>A	c.(4177-4179)GAA>AAA	p.E1393K		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1393	Ras-associating.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AGTACATTTTCCTTGTAGTGA	0.338													43	99					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36118737	36118737	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36118737C>A	uc003gsq.1	-	25	4322	c.3984G>T	c.(3982-3984)TTG>TTT	p.L1328F		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1328	Ras-associating.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CTTCAATTAACAAATCTCCAG	0.363													7	34					0.00198382	0.0019852	1	1	0
ARAP2	116984	broad.mit.edu	37	4	36122827	36122827	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36122827T>A	uc003gsq.1	-	23	4206	c.3868A>T	c.(3868-3870)ATT>TTT	p.I1290F		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1290	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TAATTATTAATTAGGTCCTCA	0.323													17	61					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36122870	36122870	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36122870C>T	uc003gsq.1	-	23	4163	c.3825G>A	c.(3823-3825)ACG>ACA	p.T1275T		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1275	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TTTGTCCCTTCGTTTGAAACA	0.338													7	87					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36130237	36130237	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36130237C>T	uc003gsq.1	-	21	3896	c.3558G>A	c.(3556-3558)ACG>ACA	p.T1186T		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1186	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCAACACAGCCGTCACATCTT	0.388													20	56					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36130328	36130328	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36130328G>A	uc003gsq.1	-	21	3805	c.3467C>T	c.(3466-3468)CCT>CTT	p.P1156L		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1156	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TATATGCAAAGGATCACCATT	0.328													16	55					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36149243	36149243	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36149243G>A	uc003gsq.1	-	18	3464	c.3126C>T	c.(3124-3126)TCC>TCT	p.S1042S		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1042	PH 4.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AATGCAAGCTGGATTTGTCCA	0.408													19	64					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36149358	36149358	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36149358G>A	uc003gsq.1	-	18	3349	c.3011C>T	c.(3010-3012)CCC>CTC	p.P1004L		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1004					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AGCAAATAAGGGAACAAAATG	0.358													16	32					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36150108	36150108	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36150108G>A	uc003gsq.1	-	17	3257	c.2919C>T	c.(2917-2919)ATC>ATT	p.I973I		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	973	PH 3.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AGGGTAAGTAGATCTCAAAGA	0.328													15	42					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36166573	36166573	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36166573G>A	uc003gsq.1	-	11	2474	c.2136C>T	c.(2134-2136)TCC>TCT	p.S712S	ARAP2_uc003gsr.1_Silent_p.S712S	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	712	C4-type.|Arf-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AGAGATTGATGGATGCCCAGT	0.428													11	95					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36166615	36166615	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36166615C>T	uc003gsq.1	-	11	2432	c.2094G>A	c.(2092-2094)AGG>AGA	p.R698R	ARAP2_uc003gsr.1_Silent_p.R698R	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	698	Arf-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CTGCACAGCTCCTGTTGGATT	0.428													17	73					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36166626	36166626	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36166626C>T	uc003gsq.1	-	11	2421	c.2083G>A	c.(2083-2085)GAA>AAA	p.E695K	ARAP2_uc003gsr.1_Missense_Mutation_p.E695K	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	695	Arf-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CTGTTGGATTCATTGAACCAA	0.433													6	79					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36179516	36179516	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36179516C>T	uc003gsq.1	-	9	2128	c.1790G>A	c.(1789-1791)AGA>AAA	p.R597K	ARAP2_uc003gsr.1_Missense_Mutation_p.R597K	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	597	PH 2.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CTTATAGCCTCTCAATTCAAG	0.398													17	100					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36230381	36230381	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36230381G>A	uc003gsq.1	-	2	1066	c.728C>T	c.(727-729)TCC>TTC	p.S243F	ARAP2_uc003gsr.1_Missense_Mutation_p.S243F	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	243					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AAAGAATGGGGATGGTGGTGA	0.393													49	110					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36230589	36230589	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36230589C>T	uc003gsq.1	-	2	858	c.520G>A	c.(520-522)GAC>AAC	p.D174N	ARAP2_uc003gsr.1_Missense_Mutation_p.D174N	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	174					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TTAATATTGTCACTACCAAAT	0.363													24	47					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36230669	36230669	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:36230669G>A	uc003gsq.1	-	2	778	c.440C>T	c.(439-441)TCT>TTT	p.S147F	ARAP2_uc003gsr.1_Missense_Mutation_p.S147F	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	147					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TTTAGGAGGAGACAGCTTATC	0.413													26	62					0	0	1	0	0
PGM2	55276	broad.mit.edu	37	4	37831637	37831637	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:37831637G>A	uc011byb.1	+	2	206	c.133G>A	c.(133-135)GAA>AAA	p.E45K	PGM2_uc011bya.1_5'UTR|PGM2_uc011byc.1_5'UTR	NM_018290	NP_060760	Q96G03	PGM2_HUMAN	phosphoglucomutase 2	45					glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity|phosphopentomutase activity			ovary(1)	1						AGGTAATAAAGAAGAACTACG	0.418													30	61					0	0	1	0	0
TBC1D1	23216	broad.mit.edu	37	4	38091684	38091684	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:38091684A>T	uc003gtb.2	+	13	2525	c.2182A>T	c.(2182-2184)ATT>TTT	p.I728F	TBC1D1_uc011byd.1_Missense_Mutation_p.I822F|TBC1D1_uc010ifd.2_Missense_Mutation_p.I515F|TBC1D1_uc011byf.1_Missense_Mutation_p.I599F	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	728						nucleus	Rab GTPase activator activity			ovary(1)	1						GCAAAAGGCTATTCTTCAACA	0.473													11	135					0	0	1	0	0
TLR10	81793	broad.mit.edu	37	4	38774898	38774898	+	Nonsense_Mutation	SNP	G	A	A	rs145139818	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:38774898G>A	uc003gti.2	-	2	2693	c.2314C>T	c.(2314-2316)CGA>TGA	p.R772*	TLR10_uc003gtj.2_Nonsense_Mutation_p.R772*|TLR10_uc003gtk.2_Nonsense_Mutation_p.R772*	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	772	TIR.|Cytoplasmic (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						ATAGCAGCTCGAAGGTTTGCC	0.418													33	97					0	0	1	0	0
TLR10	81793	broad.mit.edu	37	4	38775237	38775237	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:38775237C>T	uc003gti.2	-	2	2354	c.1975G>A	c.(1975-1977)GAA>AAA	p.E659K	TLR10_uc003gtj.2_Missense_Mutation_p.E659K|TLR10_uc003gtk.2_Missense_Mutation_p.E659K	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	659	TIR.|Cytoplasmic (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						GAACCATCTTCCTTCTCTAGA	0.368													26	71					0	0	1	0	0
TLR10	81793	broad.mit.edu	37	4	38775563	38775563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:38775563G>A	uc003gti.2	-	2	2028	c.1649C>T	c.(1648-1650)TCA>TTA	p.S550L	TLR10_uc003gtj.2_Missense_Mutation_p.S550L|TLR10_uc003gtk.2_Missense_Mutation_p.S550L	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	550	Extracellular (Potential).|LRRCT.				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						ACAGGTGTATGAATCTGACCA	0.393													32	98					0	0	1	0	0
TLR10	81793	broad.mit.edu	37	4	38776168	38776168	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:38776168C>T	uc003gti.2	-	2	1423	c.1044G>A	c.(1042-1044)ACG>ACA	p.T348T	TLR10_uc003gtj.2_Silent_p.T348T|TLR10_uc003gtk.2_Silent_p.T348T	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	348	LRR 8.|Extracellular (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						ATTGGAATTTCGTAGGATAAT	0.328													38	113					0	0	1	0	0
FAM114A1	92689	broad.mit.edu	37	4	38907180	38907180	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:38907180C>T	uc003gtn.2	+	5	650	c.474C>T	c.(472-474)GCC>GCT	p.A158A	FAM114A1_uc011byh.1_5'UTR	NM_138389	NP_612398	Q8IWE2	NXP20_HUMAN	hypothetical protein LOC92689	158						cytoplasm				ovary(1)	1						AAGCAGGAGCCACTCTACGGA	0.448													45	137					0	0	1	0	0
FAM114A1	92689	broad.mit.edu	37	4	38937369	38937369	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:38937369C>T	uc003gtn.2	+	13	1670	c.1494C>T	c.(1492-1494)GCC>GCT	p.A498A	FAM114A1_uc011byh.1_Silent_p.A291A|FAM114A1_uc010ifi.2_Silent_p.A156A	NM_138389	NP_612398	Q8IWE2	NXP20_HUMAN	hypothetical protein LOC92689	498						cytoplasm				ovary(1)	1						ATGAAGTGGCCTCTTTATCAA	0.323													13	73					0	0	1	0	0
TMEM156	80008	broad.mit.edu	37	4	39000451	39000451	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39000451G>A	uc003gto.2	-	2	275	c.167C>T	c.(166-168)TCT>TTT	p.S56F	TMEM156_uc010ifj.2_Missense_Mutation_p.S56F	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	56	Extracellular (Potential).					integral to membrane				skin(1)	1						AGTCACAAAAGAAAAATTTAA	0.353													17	32					0	0	1	0	0
TMEM156	80008	broad.mit.edu	37	4	39000465	39000465	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39000465G>A	uc003gto.2	-	2	261	c.153C>T	c.(151-153)TCC>TCT	p.S51S	TMEM156_uc010ifj.2_Silent_p.S51S	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	51	Extracellular (Potential).					integral to membrane				skin(1)	1						AATTTAAGGAGGAGAGTGAAT	0.333													19	36					0	0	1	0	0
KLHL5	51088	broad.mit.edu	37	4	39082836	39082836	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39082836C>T	uc003gts.2	+	3	893	c.818C>T	c.(817-819)TCC>TTC	p.S273F	KLHL5_uc003gtp.2_Missense_Mutation_p.S227F|KLHL5_uc003gtq.2_Missense_Mutation_p.S86F|KLHL5_uc003gtr.1_Missense_Mutation_p.S273F|KLHL5_uc003gtt.2_Missense_Mutation_p.S212F	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1	273	BTB.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1						TCGTTGTGGTCCTTGATCCAG	0.333													29	64					0	0	1	0	0
KLHL5	51088	broad.mit.edu	37	4	39083717	39083717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39083717C>T	uc003gts.2	+	4	1051	c.976C>T	c.(976-978)CGT>TGT	p.R326C	KLHL5_uc003gtp.2_Missense_Mutation_p.R280C|KLHL5_uc003gtq.2_Missense_Mutation_p.R139C|KLHL5_uc003gtr.1_Missense_Mutation_p.R326C|KLHL5_uc003gtt.2_Missense_Mutation_p.R265C	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1	326						cytoplasm|cytoskeleton	actin binding			ovary(1)	1						TCTTGGAATTCGTTCTTTTGC	0.393													72	221					0	0	1	0	0
WDR19	57728	broad.mit.edu	37	4	39245969	39245969	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39245969C>T	uc003gtv.2	+	22	2677	c.2523C>T	c.(2521-2523)GTC>GTT	p.V841V	WDR19_uc011byi.1_Silent_p.V681V|WDR19_uc003gtw.1_Silent_p.V438V	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	841	TPR 3.				cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						CCAGCAGGGTCCTTAAAAGAG	0.428													30	71					0	0	1	0	0
RFC1	5981	broad.mit.edu	37	4	39304389	39304389	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39304389G>A	uc003gty.1	-	17	2445	c.2311C>T	c.(2311-2313)CGT>TGT	p.R771C	RFC1_uc003gtx.1_Missense_Mutation_p.R770C	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	771					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						CTTTGAAAACGAAGATCAAAA	0.318													16	59					0	0	1	0	0
KLB	152831	broad.mit.edu	37	4	39409223	39409223	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39409223C>T	uc003gua.2	+	1	751	c.654C>T	c.(652-654)TTC>TTT	p.F218F	KLB_uc011byj.1_Silent_p.F218F	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	218	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						TAGATATCTTCAATGACTATG	0.393													41	107					0	0	1	0	0
KLB	152831	broad.mit.edu	37	4	39435943	39435943	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39435943G>A	uc003gua.2	+	2	1036	c.939G>A	c.(937-939)ACG>ACA	p.T313T	KLB_uc011byj.1_Silent_p.T313T	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	313	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						CGGAAAACACGATGGATATAT	0.468													24	65					0	0	1	0	0
KLB	152831	broad.mit.edu	37	4	39436236	39436236	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39436236G>A	uc003gua.2	+	2	1329	c.1232G>A	c.(1231-1233)CGA>CAA	p.R411Q	KLB_uc011byj.1_Missense_Mutation_p.R411Q	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	411	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						AACAACCCTCGAATCTTGATT	0.428													41	111					0	0	1	0	0
LIAS	11019	broad.mit.edu	37	4	39465209	39465209	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39465209C>T	uc003guf.2	+	4	450	c.377C>T	c.(376-378)GCC>GTC	p.A126V	LIAS_uc003gue.3_Missense_Mutation_p.A126V|LIAS_uc011bym.1_Missense_Mutation_p.P95S|LIAS_uc003gug.2_Missense_Mutation_p.A126V|LIAS_uc003guh.2_Missense_Mutation_p.A126V	NM_006859	NP_006850	O43766	LIAS_HUMAN	lipoic acid synthetase isoform 1 precursor	126					inflammatory response|response to lipopolysaccharide|response to oxidative stress	mitochondrion	4 iron, 4 sulfur cluster binding|lipoate synthase activity|metal ion binding				0					Lipoic Acid(DB00166)	TATGCCACCGCCACAGCCACG	0.458													11	34					0	0	1	0	0
LIAS	11019	broad.mit.edu	37	4	39469178	39469178	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39469178C>T	uc003guf.2	+	7	722	c.649C>T	c.(649-651)CGA>TGA	p.R217*	LIAS_uc003gug.2_Nonsense_Mutation_p.R217*|LIAS_uc003guh.2_Intron	NM_006859	NP_006850	O43766	LIAS_HUMAN	lipoic acid synthetase isoform 1 precursor	217					inflammatory response|response to lipopolysaccharide|response to oxidative stress	mitochondrion	4 iron, 4 sulfur cluster binding|lipoate synthase activity|metal ion binding				0					Lipoic Acid(DB00166)	TCCTGATTTTCGAGGTGATCT	0.393													47	98					0	0	1	0	0
LOC401127	401127	broad.mit.edu	37	4	39482942	39482942	+	RNA	SNP	A	C	C	rs10010309	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39482942A>C	uc011byn.1	+	1		c.1068A>C			LOC401127_uc011byo.1_RNA	NR_026854				Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA.												0						ACATCTGGAAACTTCAGACGA	0.453													6	71					0	0	1	0	0
LOC401127	401127	broad.mit.edu	37	4	39482951	39482951	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:39482951G>A	uc011byn.1	+	1		c.1077G>A			LOC401127_uc011byo.1_RNA	NR_026854				Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA.												0						AACTTCAGACGAAAGAGATTG	0.438													17	62					0	0	1	0	0
LOC344967	344967	broad.mit.edu	37	4	40045328	40045328	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40045328C>T	uc011byr.1	-	3	822	c.328G>A	c.(328-330)GAG>AAG	p.E110K		NR_027277				RecName: Full=Cytosolic acyl coenzyme A thioester hydrolase-like;          EC=3.1.2.2; AltName: Full=Acyl-CoA thioesterase 7-like;												0						TGGCCCTCCTCCTCCTGCTCC	0.597													15	25					0	0	1	0	0
LOC344967	344967	broad.mit.edu	37	4	40045360	40045360	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40045360G>A	uc011byr.1	-	3	790	c.296C>T	c.(295-297)CCT>CTT	p.P99L		NR_027277				RecName: Full=Cytosolic acyl coenzyme A thioester hydrolase-like;          EC=3.1.2.2; AltName: Full=Acyl-CoA thioesterase 7-like;												0						CACAACAGGAGGCTCTTCGAG	0.577													12	17					0	0	1	0	0
LOC344967	344967	broad.mit.edu	37	4	40045554	40045554	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40045554G>A	uc011byr.1	-	3	596	c.102C>T	c.(100-102)TTC>TTT	p.F34F		NR_027277				RecName: Full=Cytosolic acyl coenzyme A thioester hydrolase-like;          EC=3.1.2.2; AltName: Full=Acyl-CoA thioesterase 7-like;												0						TGGGCCACAGGAAGTGGGTGC	0.612													4	10					0	0	1	0	0
N4BP2	55728	broad.mit.edu	37	4	40123361	40123361	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40123361T>A	uc003guy.3	+	9	3968	c.3630T>A	c.(3628-3630)ACT>ACA	p.T1210T	N4BP2_uc010ifq.2_Silent_p.T1130T|N4BP2_uc010ifr.2_Silent_p.T1130T	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	1210						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						GAGCTGTCACTCCTGAAAACC	0.423													40	73					0	0	1	0	0
RHOH	399	broad.mit.edu	37	4	40245409	40245409	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40245409G>A	uc003guz.2	+	3	1127	c.403G>A	c.(403-405)GAA>AAA	p.E135K		NM_004310	NP_004301	Q15669	RHOH_HUMAN	ras homolog gene family, member H precursor	135					negative regulation of I-kappaB kinase/NF-kappaB cascade|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|T cell differentiation	cytosol|mitochondrion|plasma membrane	GTP binding|GTPase inhibitor activity|kinase inhibitor activity|Rho GTPase binding			ovary(1)|lung(1)	2						CAATGCCATGGAAGGGAAGAA	0.612													20	46					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351347	40351347	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40351347G>A	uc003gva.1	+	4	830	c.814G>A	c.(814-816)GGA>AGA	p.G272R		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	272	Helical; (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	GGTCTCCCTGGGAGTGACCAT	0.502													79	220					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356406	40356406	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40356406G>A	uc003gva.1	+	5	1325	c.1309G>A	c.(1309-1311)GAC>AAC	p.D437N		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	437	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity	p.D437E(3)		breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	GTGCCTCAAAGACCACAAGGC	0.483													12	111					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40438554	40438554	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40438554G>A	uc003gvc.2	-	5	1944	c.1234C>T	c.(1234-1236)CAT>TAT	p.H412Y	RBM47_uc003gvd.2_Intron|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.H374Y	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	412						nucleus	nucleotide binding|RNA binding			breast(3)	3						TTCCCTTCATGATATCGGCTA	0.522													19	238					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440176	40440176	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40440176C>T	uc003gvc.2	-	4	1445	c.735G>A	c.(733-735)GTG>GTA	p.V245V	RBM47_uc003gvd.2_Silent_p.V245V|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.V207V|RBM47_uc003gvg.1_Silent_p.V245V	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	245						nucleus	nucleotide binding|RNA binding			breast(3)	3						AGAGGATCTTCACGGTCTCCA	0.617													43	104					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440305	40440305	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40440305C>T	uc003gvc.2	-	4	1316	c.606G>A	c.(604-606)GAG>GAA	p.E202E	RBM47_uc003gvd.2_Silent_p.E202E|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.E164E|RBM47_uc003gvg.1_Silent_p.E202E	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	202	RRM 2.					nucleus	nucleotide binding|RNA binding			breast(3)	3						CGCGGTGGCTCTCGTACTCCA	0.662													17	64					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440346	40440346	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40440346C>T	uc003gvc.2	-	4	1275	c.565G>A	c.(565-567)GAC>AAC	p.D189N	RBM47_uc003gvd.2_Missense_Mutation_p.D189N|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.D151N|RBM47_uc003gvg.1_Missense_Mutation_p.D189N	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	189	RRM 2.					nucleus	nucleotide binding|RNA binding			breast(3)	3						TTCATCTTGTCGGCCGCGCTG	0.647													41	70					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440502	40440502	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40440502G>A	uc003gvc.2	-	4	1119	c.409C>T	c.(409-411)CGC>TGC	p.R137C	RBM47_uc003gvd.2_Missense_Mutation_p.R137C|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.R99C|RBM47_uc003gvg.1_Missense_Mutation_p.R137C	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	137	RRM 1.					nucleus	nucleotide binding|RNA binding			breast(3)	3						CGGCCCGGGCGGATCTCGTAG	0.622													26	42					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440697	40440697	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40440697C>T	uc003gvc.2	-	4	924	c.214G>A	c.(214-216)GAG>AAG	p.E72K	RBM47_uc003gvd.2_Missense_Mutation_p.E72K|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.E34K|RBM47_uc003gvg.1_Missense_Mutation_p.E72K	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	72	RRM 1.					nucleus	nucleotide binding|RNA binding			breast(3)	3						ACGAAGACCTCGCAGCCACGC	0.692													11	30					0	0	1	0	0
NSUN7	79730	broad.mit.edu	37	4	40778245	40778245	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40778245G>A	uc003gvj.3	+	7	1500	c.1005G>A	c.(1003-1005)TTG>TTA	p.L335L	NSUN7_uc003gvi.3_Silent_p.L335L	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						ATCCTGACTTGAAGACCCTTT	0.308													28	92					0	0	1	0	0
APBB2	323	broad.mit.edu	37	4	40946922	40946922	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:40946922G>A	uc003gvl.2	-	7	1631	c.1001C>T	c.(1000-1002)TCA>TTA	p.S334L	APBB2_uc010ifu.2_5'UTR|APBB2_uc003gvm.2_Missense_Mutation_p.S334L|APBB2_uc003gvn.2_Missense_Mutation_p.S335L|APBB2_uc011byt.1_Missense_Mutation_p.S317L	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	334					cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						AGAACTAAGTGACCCTTTCCT	0.493													20	87					0	0	1	0	0
UCHL1	7345	broad.mit.edu	37	4	41263915	41263915	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41263915C>T	uc003gvo.2	+	6	530	c.434C>T	c.(433-435)GCC>GTC	p.A145V	UCHL1_uc003gvp.2_Missense_Mutation_p.A64V|UCHL1_uc003gvq.2_Missense_Mutation_p.A64V|UCHL1_uc003gvr.2_Missense_Mutation_p.A64V|UCHL1_uc003gvs.2_Missense_Mutation_p.A64V	NM_004181	NP_004172	P09936	UCHL1_HUMAN	ubiquitin carboxyl-terminal esterase L1	145					cell death|negative regulation of MAP kinase activity|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus|plasma membrane	alpha-2A adrenergic receptor binding|cysteine-type endopeptidase activity|ligase activity|omega peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity			central_nervous_system(1)|skin(1)	2						GCCCATGATGCCGTGGCACAG	0.458													6	42					0	0	1	0	0
LIMCH1	22998	broad.mit.edu	37	4	41496622	41496622	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41496622G>A	uc003gvu.3	+	2	220	c.166G>A	c.(166-168)GAG>AAG	p.E56K	LIMCH1_uc003gvt.1_Intron|LIMCH1_uc003gvv.3_Missense_Mutation_p.E56K|LIMCH1_uc003gvw.3_Missense_Mutation_p.E56K|LIMCH1_uc003gvx.3_Missense_Mutation_p.E56K|LIMCH1_uc003gwe.3_Missense_Mutation_p.E56K|LIMCH1_uc003gvy.3_5'UTR	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	56	CH.				actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						CCTCCTCTGCGAGTAAGTATA	0.328													18	45					0	0	1	0	0
LIMCH1	22998	broad.mit.edu	37	4	41608021	41608021	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41608021G>A	uc003gvu.3	+	6	540	c.486G>A	c.(484-486)AAG>AAA	p.K162K	LIMCH1_uc003gvt.1_Silent_p.K3K|LIMCH1_uc003gvv.3_Silent_p.K162K|LIMCH1_uc003gvw.3_Silent_p.K162K|LIMCH1_uc003gvx.3_Silent_p.K162K|LIMCH1_uc003gwe.3_Silent_p.K162K|LIMCH1_uc003gvy.3_Silent_p.K3K|LIMCH1_uc003gwa.3_Silent_p.K3K|LIMCH1_uc003gvz.3_Silent_p.K3K	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	162					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AGATGCGAAAGGTAACTTGGC	0.433													10	31					0	0	1	0	0
LIMCH1	22998	broad.mit.edu	37	4	41615664	41615665	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41615664_41615665GG>AA	uc003gvu.3	+	7	722_723	c.668_669GG>AA	c.(667-669)AGG>AAA	p.R223K	LIMCH1_uc003gvt.1_Missense_Mutation_p.R64K|LIMCH1_uc003gvv.3_Missense_Mutation_p.R223K|LIMCH1_uc003gvw.3_Missense_Mutation_p.R223K|LIMCH1_uc003gvx.3_Missense_Mutation_p.R223K|LIMCH1_uc003gwe.3_Missense_Mutation_p.R223K|LIMCH1_uc003gvy.3_Missense_Mutation_p.R64K|LIMCH1_uc003gwa.3_Missense_Mutation_p.R64K|LIMCH1_uc003gvz.3_Missense_Mutation_p.R64K|LIMCH1_uc011byu.1_Missense_Mutation_p.R69K|LIMCH1_uc003gwc.3_Missense_Mutation_p.R69K|LIMCH1_uc003gwd.3_Missense_Mutation_p.R69K|LIMCH1_uc011byv.1_5'UTR|LIMCH1_uc003gwb.1_Missense_Mutation_p.R71K	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	223					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GTAGTCCTCAGGGGAAGCAGCG	0.545													9	64					0	0	1	0	0
LIMCH1	22998	broad.mit.edu	37	4	41648595	41648595	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41648595C>T	uc003gvu.3	+	12	1404	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	LIMCH1_uc003gvv.3_Silent_p.F450F|LIMCH1_uc003gvw.3_Silent_p.F450F|LIMCH1_uc003gvx.3_Silent_p.F438F|LIMCH1_uc003gwe.3_Silent_p.F450F|LIMCH1_uc003gvy.3_Silent_p.F279F|LIMCH1_uc003gwa.3_Silent_p.F291F|LIMCH1_uc003gvz.3_Silent_p.F835F|LIMCH1_uc011byu.1_Silent_p.F284F|LIMCH1_uc003gwc.3_Silent_p.F296F|LIMCH1_uc003gwd.3_Silent_p.F284F|LIMCH1_uc011byv.1_Silent_p.F201F	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	450					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TTGAGAGGTTCACCATCAGTG	0.493													54	182					0	0	1	0	0
LIMCH1	22998	broad.mit.edu	37	4	41664893	41664893	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41664893G>A	uc003gvu.3	+	15	2082	c.2028G>A	c.(2026-2028)GTG>GTA	p.V676V	LIMCH1_uc003gvv.3_Silent_p.V676V|LIMCH1_uc003gvw.3_Silent_p.V676V|LIMCH1_uc003gvx.3_Silent_p.V664V|LIMCH1_uc003gwe.3_Silent_p.V676V|LIMCH1_uc003gvy.3_Silent_p.V505V|LIMCH1_uc003gwa.3_Silent_p.V517V|LIMCH1_uc003gvz.3_Silent_p.V1061V|LIMCH1_uc011byu.1_Silent_p.V510V|LIMCH1_uc003gwc.3_Silent_p.V522V|LIMCH1_uc003gwd.3_Silent_p.V510V|LIMCH1_uc011byv.1_Silent_p.V427V|LIMCH1_uc011byw.1_5'UTR	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	676					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TGGCCTTTGTGGAATTTCCCT	0.458													12	98					0	0	1	0	0
LIMCH1	22998	broad.mit.edu	37	4	41686444	41686444	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41686444G>A	uc003gvu.3	+	22	2778	c.2724G>A	c.(2722-2724)GGG>GGA	p.G908G	LIMCH1_uc003gvv.3_Silent_p.G908G|LIMCH1_uc003gvw.3_Silent_p.G907G|LIMCH1_uc003gvx.3_Silent_p.G920G|LIMCH1_uc003gwe.3_Silent_p.G831G|LIMCH1_uc003gvy.3_Silent_p.G736G|LIMCH1_uc003gwa.3_Silent_p.G748G|LIMCH1_uc003gvz.3_Silent_p.G1292G|LIMCH1_uc011byu.1_Silent_p.G741G|LIMCH1_uc003gwc.3_Silent_p.G753G|LIMCH1_uc003gwd.3_Silent_p.G741G|LIMCH1_uc011byv.1_Silent_p.G658G|LIMCH1_uc011byw.1_Silent_p.G207G	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	908					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						CTCATTCTGGGAACCCTGTAT	0.473													20	75					0	0	1	0	0
LIMCH1	22998	broad.mit.edu	37	4	41689911	41689912	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41689911_41689912CC>TT	uc003gvu.3	+	24	3045_3046	c.2991_2992CC>TT	c.(2989-2994)ACCCCT>ACTTCT	p.P998S	LIMCH1_uc003gvv.3_Intron|LIMCH1_uc003gvw.3_Intron|LIMCH1_uc003gvx.3_Intron|LIMCH1_uc003gwe.3_Intron|LIMCH1_uc003gvy.3_Intron|LIMCH1_uc003gwa.3_Intron|LIMCH1_uc003gvz.3_Missense_Mutation_p.P1382S|LIMCH1_uc011byu.1_Missense_Mutation_p.P831S|LIMCH1_uc003gwc.3_Intron|LIMCH1_uc003gwd.3_Intron|LIMCH1_uc011byv.1_Missense_Mutation_p.P748S|LIMCH1_uc011byw.1_Intron	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	998					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GTTCTCCCACCCCTCCCGGTCA	0.485													24	82					0	0	1	0	0
LIMCH1	22998	broad.mit.edu	37	4	41694356	41694356	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41694356C>T	uc003gvu.3	+	26	3235	c.3181C>T	c.(3181-3183)CGA>TGA	p.R1061*	LIMCH1_uc003gvv.3_Nonsense_Mutation_p.R1035*|LIMCH1_uc003gvw.3_Nonsense_Mutation_p.R1034*|LIMCH1_uc003gvx.3_Nonsense_Mutation_p.R1047*|LIMCH1_uc003gwe.3_Nonsense_Mutation_p.R958*|LIMCH1_uc003gvy.3_Nonsense_Mutation_p.R863*|LIMCH1_uc003gwa.3_Nonsense_Mutation_p.R875*|LIMCH1_uc003gvz.3_Nonsense_Mutation_p.R1445*|LIMCH1_uc011byu.1_Nonsense_Mutation_p.R894*|LIMCH1_uc003gwc.3_Nonsense_Mutation_p.R880*|LIMCH1_uc003gwd.3_Nonsense_Mutation_p.R868*|LIMCH1_uc011byv.1_Nonsense_Mutation_p.R811*|LIMCH1_uc011byw.1_Nonsense_Mutation_p.R334*|LIMCH1_uc010ifv.2_5'Flank	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	1061	LIM zinc-binding.				actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TGTTAGGATTCGAAATGGTCT	0.428													13	68					0	0	1	0	0
PHOX2B	8929	broad.mit.edu	37	4	41750565	41750565	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41750565C>T	uc003gwf.3	-	1	423	c.63G>A	c.(61-63)ATG>ATA	p.M21I		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	21					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						TCGAGGTGTCCATCCCAGCCA	0.498			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				12	31					0	0	1	0	0
DCAF4L1	285429	broad.mit.edu	37	4	41984913	41984913	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:41984913C>T	uc003gwk.2	+	1	1201	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	368										skin(1)	1						GCGTGGCCTTCGCTTCTCGGC	0.607													33	50					0	0	1	0	0
BEND4	389206	broad.mit.edu	37	4	42122113	42122113	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:42122113C>T	uc003gwn.2	-	5	1925	c.1345G>A	c.(1345-1347)GAA>AAA	p.E449K	BEND4_uc003gwm.2_Intron|BEND4_uc011byy.1_Missense_Mutation_p.E449K	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	449	BEN.										0						GGGCGTCTTTCGGGACCTGTC	0.498													11	22					0	0	1	0	0
BEND4	389206	broad.mit.edu	37	4	42122179	42122179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:42122179C>T	uc003gwn.2	-	5	1859	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K	BEND4_uc003gwm.2_Missense_Mutation_p.E427K|BEND4_uc011byy.1_Missense_Mutation_p.E427K	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	427	BEN.										0						TACTTAAGCTCATCGGTTGTG	0.468													6	49					0	0	1	0	0
BEND4	389206	broad.mit.edu	37	4	42145908	42145908	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:42145908C>T	uc003gwn.2	-	3	1171	c.591G>A	c.(589-591)ATG>ATA	p.M197I	BEND4_uc003gwm.2_Missense_Mutation_p.M197I|BEND4_uc011byy.1_Missense_Mutation_p.M197I	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	197											0						CGCAAGAAATCATGGACTGAG	0.478													6	17					0	0	1	0	0
SHISA3	152573	broad.mit.edu	37	4	42403225	42403225	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:42403225C>T	uc003gwp.2	+	2	692	c.474C>T	c.(472-474)CCC>CCT	p.P158P		NM_001080505	NP_001073974	A0PJX4	SHSA3_HUMAN	shisa homolog 3 precursor	158	Cytoplasmic (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|skin(1)	2						CCAGGGCACCCTCCCGGCAGT	0.667													64	162					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42414957	42414957	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:42414957C>T	uc003gwr.2	-	37	3703	c.3471G>A	c.(3469-3471)ACG>ACA	p.T1157T	ATP8A1_uc003gwq.2_Silent_p.T383T|ATP8A1_uc003gws.2_Silent_p.T1142T	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1157	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GCCTCTGTTTCGTGGTATCAT	0.458													17	46					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42457418	42457418	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:42457418G>A	uc003gwr.2	-	29	2945	c.2713C>T	c.(2713-2715)CCT>TCT	p.P905S	ATP8A1_uc003gwq.2_Missense_Mutation_p.P131S|ATP8A1_uc003gws.2_Missense_Mutation_p.P890S	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	905	Helical; (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	AGAGTTAAAGGAGGCATTGCT	0.398													31	92					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42509145	42509145	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:42509145G>A	uc003gwr.2	-	23	2206	c.1974C>T	c.(1972-1974)GCC>GCT	p.A658A	ATP8A1_uc003gwq.2_5'UTR|ATP8A1_uc003gws.2_Silent_p.A643A	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	658	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TATCCTCAATGGCTGTTGCTC	0.343													40	123					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42554560	42554560	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:42554560C>T	uc003gwr.2	-	17	1713	c.1481G>A	c.(1480-1482)CGA>CAA	p.R494Q	ATP8A1_uc003gws.2_Missense_Mutation_p.R479Q|ATP8A1_uc011byz.1_Missense_Mutation_p.R479Q	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	494	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GTCACCTTCTCGCTCTGGCAC	0.363													31	75					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42581868	42581868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:42581868C>T	uc003gwr.2	-	11	1194	c.962G>A	c.(961-963)CGA>CAA	p.R321Q	ATP8A1_uc003gws.2_Missense_Mutation_p.R321Q|ATP8A1_uc011byz.1_Missense_Mutation_p.R321Q	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	321	Extracellular (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	AGAATGCCTTCGATTCCAAAT	0.338													14	52					0	0	1	0	0
KCTD8	386617	broad.mit.edu	37	4	44449850	44449850	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:44449850G>C	uc003gwu.2	-	1	975	c.691C>G	c.(691-693)CGT>GGT	p.R231G		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	231						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						CGCGCCACACGCCGGAATTTG	0.657										HNSCC(17;0.042)			5	10					0	0	1	0	0
KCTD8	386617	broad.mit.edu	37	4	44449852	44449852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:44449852C>T	uc003gwu.2	-	1	973	c.689G>A	c.(688-690)CGG>CAG	p.R230Q		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	230						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						CGCCACACGCCGGAATTTGGC	0.657										HNSCC(17;0.042)			5	10					0	0	1	0	0
YIPF7	285525	broad.mit.edu	37	4	44624497	44624497	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:44624497C>T	uc010ifx.1	-	6	794	c.777G>A	c.(775-777)CAG>CAA	p.Q259Q		NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	259						endoplasmic reticulum membrane|integral to membrane					0						CAAGAAGCTGCTGTCCTTCCA	0.448													6	31					0	0	1	0	0
YIPF7	285525	broad.mit.edu	37	4	44624560	44624560	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:44624560G>A	uc010ifx.1	-	6	731	c.714C>T	c.(712-714)ATC>ATT	p.I238I		NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	238	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0						ACCAGCCAATGATGACCAGGG	0.453													13	37					0	0	1	0	0
YIPF7	285525	broad.mit.edu	37	4	44637951	44637951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:44637951G>A	uc010ifx.1	-	3	357	c.340C>T	c.(340-342)CCT>TCT	p.P114S	YIPF7_uc010ify.1_Missense_Mutation_p.P114S	NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	114						endoplasmic reticulum membrane|integral to membrane					0						TCTAGCAAAGGAGGCTCTTCA	0.388													4	39					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46060385	46060385	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:46060385C>T	uc003gxb.2	-	7	917	c.765G>A	c.(763-765)GGG>GGA	p.G255G		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	255	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TAACATAATCCCCTGTAAGAA	0.279													22	54					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46067533	46067533	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:46067533C>T	uc003gxb.2	-	4	542	c.390G>A	c.(388-390)ATG>ATA	p.M130I		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	130	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TAAGCACTTTCATGGTACTAT	0.313													16	44					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46125901	46125901	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:46125901G>A	uc003gxb.2	-	1	182	c.30C>T	c.(28-30)TCC>TCT	p.S10S		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	10					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		GAAGAAAAGGGGAGAAGAGAA	0.473													6	48					0	0	1	0	0
GABRA2	2555	broad.mit.edu	37	4	46263977	46263977	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:46263977C>T	uc003gxc.3	-	8	1698	c.1025G>A	c.(1024-1026)TGG>TAG	p.W342*	GABRA2_uc010igc.2_Nonsense_Mutation_p.W342*|GABRA2_uc011bzc.1_Nonsense_Mutation_p.W287*|GABRA2_uc003gxe.2_Nonsense_Mutation_p.W342*	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	342	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	ATCCCAAGCCCATCCTCTTTT	0.383													33	111					0	0	1	0	0
GABRA2	2555	broad.mit.edu	37	4	46263989	46263989	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:46263989G>A	uc003gxc.3	-	8	1686	c.1013C>T	c.(1012-1014)ACC>ATC	p.T338I	GABRA2_uc010igc.2_Missense_Mutation_p.T338I|GABRA2_uc011bzc.1_Missense_Mutation_p.T283I|GABRA2_uc003gxe.2_Missense_Mutation_p.T338I	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	338	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TCCTCTTTTGGTGAAGTAATT	0.398													34	108					0	0	1	0	0
GABRA2	2555	broad.mit.edu	37	4	46312191	46312191	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:46312191G>A	uc003gxc.3	-	5	1231	c.558C>T	c.(556-558)AGC>AGT	p.S186S	GABRA2_uc010igc.2_Silent_p.S186S|GABRA2_uc011bzc.1_Silent_p.S131S|GABRA2_uc003gxe.2_Silent_p.S186S	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	186	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGTACTTACAGCTGCCAAATT	0.393													7	93					0	0	1	0	0
GABRA4	2557	broad.mit.edu	37	4	46930315	46930315	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:46930315C>T	uc003gxg.2	-	9	1731	c.1592G>A	c.(1591-1593)GGG>GAG	p.G531E		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	531	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GTTAAATGCCCCAAATGTGAC	0.388													23	100					0	0	1	0	0
GABRA4	2557	broad.mit.edu	37	4	46930755	46930755	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:46930755C>T	uc003gxg.2	-	9	1291	c.1152G>A	c.(1150-1152)TTG>TTA	p.L384L		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	384	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTCTCATGTTCAAATTGGCAT	0.318													16	43					0	0	1	0	0
GABRA4	2557	broad.mit.edu	37	4	46967040	46967040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:46967040C>T	uc003gxg.2	-	8	1220	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	361	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GCGGGAACTTCCTGAGGGGGC	0.443													34	62					0	0	1	0	0
GABRB1	2560	broad.mit.edu	37	4	47405691	47405691	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47405691G>A	uc003gxh.2	+	7	1172	c.798G>A	c.(796-798)TGG>TGA	p.W266*	GABRB1_uc011bze.1_Nonsense_Mutation_p.W196*	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	266	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TGTCTTTTTGGATCAACTATG	0.383													12	72					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47514787	47514787	+	Missense_Mutation	SNP	G	A	A	rs149671949		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47514787G>A	uc003gxk.1	+	2	394	c.230G>A	c.(229-231)CGA>CAA	p.R77Q	ATP10D_uc003gxj.3_Missense_Mutation_p.R77Q	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	77	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						AATCGAATACGAACAACAAAG	0.388													23	47					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47527654	47527654	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47527654C>T	uc003gxk.1	+	5	935	c.771C>T	c.(769-771)GGC>GGT	p.G257G	ATP10D_uc003gxj.3_Silent_p.G257G	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	257	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						GATTCCGAGGCTTCCTGTGAG	0.378													12	49					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47548875	47548875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47548875C>T	uc003gxk.1	+	10	1795	c.1631C>T	c.(1630-1632)CCC>CTC	p.P544L	ATP10D_uc003gxl.1_5'UTR|ATP10D_uc003gxj.3_Missense_Mutation_p.P529L	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	544	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						TTCAGTAGCCCCATTGTAAGT	0.428													7	31					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47559743	47559743	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47559743C>T	uc003gxk.1	+	12	2051	c.1887C>T	c.(1885-1887)TTC>TTT	p.F629F	ATP10D_uc003gxl.1_Intron	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	629	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						AAAGTCTTTTCCAGAGATGGT	0.448													14	51					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47560241	47560241	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47560241G>A	uc003gxk.1	+	12	2549	c.2385G>A	c.(2383-2385)ACG>ACA	p.T795T	ATP10D_uc003gxl.1_Silent_p.T43T	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	795	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						TGGTGTATACGAAAGGCGCTG	0.418													41	107					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47561043	47561043	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47561043G>A	uc003gxk.1	+	13	2702	c.2538G>A	c.(2536-2538)AAG>AAA	p.K846K	ATP10D_uc003gxl.1_Silent_p.K94K	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	846	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						GTATAGCAAAGAAGGTGAGAC	0.428													17	86					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47593172	47593172	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47593172G>A	uc003gxk.1	+	23	4219	c.4055G>A	c.(4054-4056)GGG>GAG	p.G1352E	ATP10D_uc003gxl.1_Missense_Mutation_p.G600E	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1352	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						AAGTGGAGAGGGGCTGGAAAG	0.473													24	91					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47602361	47602361	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47602361G>A	uc003gxm.2	-	21	2909	c.2816C>T	c.(2815-2817)CCA>CTA	p.P939L	CORIN_uc011bzf.1_Missense_Mutation_p.P800L|CORIN_uc011bzg.1_Missense_Mutation_p.P872L	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	939	Extracellular (Potential).|Peptidase S1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CAGCTTAAATGGCACTGaatt	0.358													17	37					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47605684	47605684	+	Silent	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47605684T>G	uc003gxm.2	-	20	2635	c.2542A>C	c.(2542-2544)AGA>CGA	p.R848R	CORIN_uc011bzf.1_Silent_p.R709R|CORIN_uc011bzg.1_Silent_p.R781R	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	848	Extracellular (Potential).|Peptidase S1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						GCATTCTCTCTCCTAAAATTA	0.353													4	41					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47663777	47663777	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47663777C>T	uc003gxm.2	-	12	1779	c.1686G>A	c.(1684-1686)GAG>GAA	p.E562E	CORIN_uc011bzf.1_Silent_p.E423E|CORIN_uc011bzg.1_Silent_p.E495E|CORIN_uc011bzh.1_Silent_p.E525E|CORIN_uc011bzi.1_Silent_p.E525E	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	562	Extracellular (Potential).|FZ 2.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CTGAATTTTCCTCTGGAAATT	0.413													25	72					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47682233	47682233	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47682233C>T	uc003gxm.2	-	8	1150	c.1057G>A	c.(1057-1059)GGG>AGG	p.G353R	CORIN_uc011bzf.1_Missense_Mutation_p.G214R|CORIN_uc011bzg.1_Missense_Mutation_p.G286R|CORIN_uc011bzh.1_Intron|CORIN_uc011bzi.1_Intron|CORIN_uc003gxn.3_3'UTR	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	353	Extracellular (Potential).|LDL-receptor class A 3.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						ATGCAGCGCCCGTCCCCGCAG	0.532													11	36					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47746586	47746586	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47746586G>A	uc003gxm.2	-	5	725	c.632C>T	c.(631-633)CCC>CTC	p.P211L	CORIN_uc011bzf.1_Missense_Mutation_p.P72L|CORIN_uc011bzg.1_Missense_Mutation_p.P144L|CORIN_uc011bzh.1_Missense_Mutation_p.P211L|CORIN_uc011bzi.1_Missense_Mutation_p.P211L|CORIN_uc003gxn.3_Missense_Mutation_p.P211L	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	211	Extracellular (Potential).|FZ 1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						GGACCTACAGGGCAGGAGTCC	0.413													48	126					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47746591	47746591	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47746591G>A	uc003gxm.2	-	5	720	c.627C>T	c.(625-627)CTC>CTT	p.L209L	CORIN_uc011bzf.1_Silent_p.L70L|CORIN_uc011bzg.1_Silent_p.L142L|CORIN_uc011bzh.1_Silent_p.L209L|CORIN_uc011bzi.1_Silent_p.L209L|CORIN_uc003gxn.3_Silent_p.L209L	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	209	Extracellular (Potential).|FZ 1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TACAGGGCAGGAGTCCATGAC	0.418													13	139					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47765403	47765403	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47765403C>T	uc003gxm.2	-	4	703	c.610G>A	c.(610-612)GAT>AAT	p.D204N	CORIN_uc011bzf.1_Missense_Mutation_p.D65N|CORIN_uc011bzg.1_Missense_Mutation_p.D137N|CORIN_uc011bzh.1_Missense_Mutation_p.D204N|CORIN_uc011bzi.1_Missense_Mutation_p.D204N|CORIN_uc003gxn.3_Missense_Mutation_p.D204N	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	204	Extracellular (Potential).|FZ 1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TACCTGTCATCGCCATCAATG	0.413													6	17					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47765425	47765425	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47765425G>A	uc003gxm.2	-	4	681	c.588C>T	c.(586-588)TTC>TTT	p.F196F	CORIN_uc011bzf.1_Silent_p.F57F|CORIN_uc011bzg.1_Silent_p.F129F|CORIN_uc011bzh.1_Silent_p.F196F|CORIN_uc011bzi.1_Silent_p.F196F|CORIN_uc003gxn.3_Silent_p.F196F	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	196	Extracellular (Potential).|FZ 1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TGCACTCAGGGAAGGCGAGGG	0.413													8	26					0	0	1	0	0
CNGA1	1259	broad.mit.edu	37	4	47938716	47938716	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47938716C>T	uc003gxt.3	-	11	2061	c.1795G>A	c.(1795-1797)GGG>AGG	p.G599R	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.G668R	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	599	cGMP (Potential).|Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						ATCTGCTTCCCTTTCTCTTCC	0.418													64	197					0	0	1	0	0
CNGA1	1259	broad.mit.edu	37	4	47942791	47942791	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47942791C>T	uc003gxt.3	-	10	919	c.653G>A	c.(652-654)CGA>CAA	p.R218Q	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.R287Q	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	218	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						TGTCCTTGTTCGTACAAACAT	0.294													22	57					0	0	1	0	0
CNGA1	1259	broad.mit.edu	37	4	47945211	47945211	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:47945211C>T	uc003gxt.3	-	8	702	c.436G>A	c.(436-438)GAT>AAT	p.D146N	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.D215N|CNGA1_uc003gxv.1_Missense_Mutation_p.D146N	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	146	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						TCtttcttatctttgcttttc	0.229													12	37					0	0	1	0	0
NIPAL1	152519	broad.mit.edu	37	4	48035011	48035011	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48035011G>A	uc003gxw.2	+	4	438	c.372G>A	c.(370-372)ATG>ATA	p.M124I		NM_207330	NP_997213	Q6NVV3	NIPA3_HUMAN	NIPA-like domain containing 1	124	Helical; (Potential).					integral to membrane					0						GCTTTCTAGTGGGAGCAGGAG	0.428													12	44					0	0	1	0	0
NIPAL1	152519	broad.mit.edu	37	4	48036926	48036926	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48036926G>A	uc003gxw.2	+	5	556	c.490G>A	c.(490-492)GAG>AAG	p.E164K		NM_207330	NP_997213	Q6NVV3	NIPA3_HUMAN	NIPA-like domain containing 1	164	Cytoplasmic (Potential).					integral to membrane					0						CTTTTTAAACGAGCACTTGAA	0.378													36	68					0	0	1	0	0
TXK	7294	broad.mit.edu	37	4	48073536	48073536	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48073536C>T	uc003gxx.3	-	14	1599	c.1513G>A	c.(1513-1515)GAG>AAG	p.E505K	TXK_uc010igj.2_RNA|TXK_uc011bzj.1_Missense_Mutation_p.E192K	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	505	Protein kinase.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						ATGCTTACCTCATGCCAGCAG	0.453													56	98					0	0	1	0	0
TXK	7294	broad.mit.edu	37	4	48076025	48076025	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48076025G>A	uc003gxx.3	-	13	1370	c.1284C>T	c.(1282-1284)TTC>TTT	p.F428F	TXK_uc010igj.2_Intron|TXK_uc011bzj.1_Silent_p.F115F	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	428	Protein kinase.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						ACTTGATTGGGAACTTGGCTC	0.388													9	90					0	0	1	0	0
TEC	7006	broad.mit.edu	37	4	48169959	48169959	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48169959G>A	uc003gxz.2	-	7	598	c.507C>T	c.(505-507)CCC>CCT	p.P169P		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	169					intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						GAATTGGTGGGGGAGGCCTTC	0.383													11	101					0	0	1	0	0
TEC	7006	broad.mit.edu	37	4	48230567	48230567	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48230567G>A	uc003gxz.2	-	2	156	c.65C>T	c.(64-66)TCG>TTG	p.S22L		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	22	PH.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						GTTTAAGGGCGATGTCTTCTT	0.388													46	85					0	0	1	0	0
FRYL	285527	broad.mit.edu	37	4	48567670	48567670	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48567670G>A	uc003gyh.1	-	29	3813	c.3208C>T	c.(3208-3210)CGT>TGT	p.R1070C	FRYL_uc003gyk.2_Missense_Mutation_p.R1070C|FRYL_uc003gyi.1_5'Flank	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1070					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						AGACTGTGACGAAGGCTCTGT	0.353													14	44					0	0	1	0	0
FRYL	285527	broad.mit.edu	37	4	48597980	48597980	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48597980G>A	uc003gyh.1	-	14	1678	c.1073C>T	c.(1072-1074)TCT>TTT	p.S358F	FRYL_uc003gyk.2_Missense_Mutation_p.S358F	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	358					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TCTATACAAAGATTCCAGTGC	0.284													8	31					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	48994003	48994003	+	Missense_Mutation	SNP	T	C	C	rs146104899	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48994003T>C	uc003gyv.2	+	4	589	c.407T>C	c.(406-408)CTA>CCA	p.L136P	CWH43_uc011bzl.1_Missense_Mutation_p.L109P	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	136	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						CTTGTTGTTCTACGCATATGG	0.373													26	69					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	48996764	48996764	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:48996764G>A	uc003gyv.2	+	5	822	c.640G>A	c.(640-642)GGA>AGA	p.G214R	CWH43_uc011bzl.1_Missense_Mutation_p.G187R	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	214	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						CTGGGTTTTTGGAGAAGTCTC	0.547													46	116					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49005761	49005761	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:49005761C>T	uc003gyv.2	+	7	994	c.812C>T	c.(811-813)TCA>TTA	p.S271L	CWH43_uc011bzl.1_Missense_Mutation_p.S244L	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	271					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GGAACAGCTTCAGCTGCGGGG	0.453													42	86					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49052746	49052746	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:49052746G>A	uc003gyv.2	+	15	2083	c.1901G>A	c.(1900-1902)AGT>AAT	p.S634N	CWH43_uc011bzl.1_Missense_Mutation_p.S607N	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	634					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GCTGAACTGAGTGATTCAGAA	0.383													34	70					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49063860	49063860	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:49063860G>A	uc003gyv.2	+	16	2235	c.2053G>A	c.(2053-2055)GAA>AAA	p.E685K	CWH43_uc011bzl.1_Missense_Mutation_p.E658K	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	685					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						ACACAATTATGAAAACAACCA	0.259													20	39					0	0	1	0	0
LRRC66	339977	broad.mit.edu	37	4	52861734	52861734	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:52861734G>A	uc003gzi.2	-	4	1467	c.1454C>T	c.(1453-1455)TCG>TTG	p.S485L		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	485						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TGGGCTCTGCGAACTGCCAGG	0.557													33	82					0	0	1	0	0
LRRC66	339977	broad.mit.edu	37	4	52861758	52861758	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:52861758C>G	uc003gzi.2	-	4	1443	c.1430G>C	c.(1429-1431)AGG>ACG	p.R477T		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	477						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						CTTTCTGCTCCTTCCCAGAGT	0.542													27	89					0	0	1	0	0
LRRC66	339977	broad.mit.edu	37	4	52861992	52861992	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:52861992G>A	uc003gzi.2	-	4	1209	c.1196C>T	c.(1195-1197)CCT>CTT	p.P399L		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	399						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						GTCAACATAAGGCCTTGTGAA	0.547													25	68					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52926959	52926959	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:52926959G>A	uc003gzl.2	+	3	483	c.205G>A	c.(205-207)GAT>AAT	p.D69N	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.D69N|SPATA18_uc003gzk.1_Missense_Mutation_p.D69N	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	69					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			AGGACGTAATGATGGTGTGGA	0.289													9	74					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52927008	52927008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:52927008C>T	uc003gzl.2	+	3	532	c.254C>T	c.(253-255)TCC>TTC	p.S85F	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.S85F|SPATA18_uc003gzk.1_Missense_Mutation_p.S85F	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	85					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			CTGGAGGCTTCCTTTACTGCT	0.403													29	56					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52944946	52944946	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:52944946C>T	uc003gzl.2	+	8	1344	c.1066C>T	c.(1066-1068)CAT>TAT	p.H356Y	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.H324Y|SPATA18_uc003gzk.1_Missense_Mutation_p.H356Y	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	356					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			CTTCAAGATCCATGTGAGAAA	0.383													27	120					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52945952	52945952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:52945952C>T	uc003gzl.2	+	9	1500	c.1222C>T	c.(1222-1224)CCT>TCT	p.P408S	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.P376S|SPATA18_uc003gzk.1_Missense_Mutation_p.P408S	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	408					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			GATTTCATTCCCTCCTGTCGT	0.438													75	226					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52945956	52945956	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:52945956C>T	uc003gzl.2	+	9	1504	c.1226C>T	c.(1225-1227)CCT>CTT	p.P409L	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.P377L|SPATA18_uc003gzk.1_Missense_Mutation_p.P409L	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	409					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			TCATTCCCTCCTGTCGTTGAC	0.438													90	218					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52946055	52946055	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:52946055G>A	uc003gzl.2	+	9	1603	c.1325G>A	c.(1324-1326)GGA>GAA	p.G442E	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.G410E|SPATA18_uc003gzk.1_Missense_Mutation_p.G442E	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	442					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			ATTGCATATGGAGCAGATGGA	0.418													53	160					0	0	1	0	0
USP46	64854	broad.mit.edu	37	4	53476724	53476724	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:53476724G>A	uc003gzn.2	-	5	806	c.621C>T	c.(619-621)TCC>TCT	p.S207S	USP46_uc003gzm.3_Silent_p.S200S|USP46_uc011bzr.1_Silent_p.S184S|USP46_uc011bzs.1_Silent_p.S91S	NM_022832	NP_073743	P62068	UBP46_HUMAN	ubiquitin specific peptidase 46 isoform 1	207					behavior|protein deubiquitination|regulation of synaptic transmission, GABAergic|ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(32;0.0295)			AGTGGGTAATGGATGTATTCT	0.363													15	31					0	0	1	0	0
LNX1	84708	broad.mit.edu	37	4	54343015	54343015	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:54343015T>C	uc003hag.3	-	9	2053	c.1797A>G	c.(1795-1797)GAA>GAG	p.E599E	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Silent_p.E503E|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	599						cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			TGCTGCAGTCTTCCTGGGGCT	0.537													12	130					0	0	1	0	0
LNX1	84708	broad.mit.edu	37	4	54362336	54362336	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:54362336C>T	uc003hag.3	-	6	1460	c.1204G>A	c.(1204-1206)GAT>AAT	p.D402N	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.D306N|LNX1_uc003hah.3_Intron	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	402	PDZ 2.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CCAGGCTCATCCACCTTGCGC	0.522													14	171					0	0	1	0	0
LNX1	84708	broad.mit.edu	37	4	54364824	54364824	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:54364824C>T	uc003hag.3	-	5	1218	c.962G>A	c.(961-963)GGA>GAA	p.G321E	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.G225E|LNX1_uc003hah.3_Intron	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	321	PDZ 1.			G -> R (in Ref. 3; BAB71291).		cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			AATGATGTCTCCTGGCAGTAG	0.488													22	56					0	0	1	0	0
LNX1	84708	broad.mit.edu	37	4	54364942	54364942	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:54364942G>A	uc003hag.3	-	5	1100	c.844C>T	c.(844-846)CCC>TCC	p.P282S	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.P186S|LNX1_uc003hah.3_Intron	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	282	PDZ 1.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CTTTCACTGGGATCTACTCGA	0.443													26	55					0	0	1	0	0
LNX1	84708	broad.mit.edu	37	4	54373514	54373514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:54373514C>T	uc003hag.3	-	4	1001	c.745G>A	c.(745-747)GAA>AAA	p.E249K	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.E153K|LNX1_uc003hah.3_Intron	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	249						cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			TCAGAATTTTCCCTGCCCTGG	0.488													30	81					0	0	1	0	0
GSX2	170825	broad.mit.edu	37	4	54966673	54966673	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:54966673G>A	uc010igp.1	+	1	426	c.162G>A	c.(160-162)AAG>AAA	p.K54K	PDGFRA_uc003haa.2_Intron	NM_133267	NP_573574	Q9BZM3	GSX2_HUMAN	GS homeobox 2	54						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(7;0.00671)|Lung NSC(11;0.0154)|all_neural(26;0.0209)|Glioma(25;0.08)|all_epithelial(27;0.147)		LUSC - Lung squamous cell carcinoma(32;0.00216)			CGTCCCGCAAGAGCGGCGCGT	0.716													12	20					0	0	1	0	0
PDGFRA	5156	broad.mit.edu	37	4	55127312	55127312	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55127312G>A	uc003han.3	+	3	431	c.100G>A	c.(100-102)GAA>AAA	p.E34K	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_Missense_Mutation_p.E34K|PDGFRA_uc010igq.1_Intron|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	34	Ig-like C2-type 1.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	CCTTCCAAATGAAAATGAAAA	0.473			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			32	139					0	0	1	0	0
PDGFRA	5156	broad.mit.edu	37	4	55138596	55138596	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55138596C>T	uc003han.3	+	9	1604	c.1273C>T	c.(1273-1275)CAT>TAT	p.H425Y	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.H319Y|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	425	Ig-like C2-type 5.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	CGATGATCACCATGGCTCAAC	0.468			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			28	94					0	0	1	0	0
PDGFRA	5156	broad.mit.edu	37	4	55139748	55139748	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55139748C>T	uc003han.3	+	10	1740	c.1409C>T	c.(1408-1410)TCA>TTA	p.S470L	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.S364L|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	470	Ig-like C2-type 5.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	AACAATGTCTCAAACATCATC	0.502			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			23	87					0	0	1	0	0
PDGFRA	5156	broad.mit.edu	37	4	55139809	55139809	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55139809C>T	uc003han.3	+	10	1801	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Silent_p.F384F|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	490	Ig-like C2-type 5.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GTGTGACTTTCGCCAAAGTGG	0.532			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			6	105					0	0	1	0	0
PDGFRA	5156	broad.mit.edu	37	4	55144597	55144597	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55144597G>A	uc003han.3	+	15	2402	c.2071G>A	c.(2071-2073)GAT>AAT	p.D691N	PDGFRA_uc003haa.2_Missense_Mutation_p.D451N|PDGFRA_uc010igq.1_Missense_Mutation_p.D585N|PDGFRA_uc003ham.2_RNA|PDGFRA_uc003hao.1_Missense_Mutation_p.D70N	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	691	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TAAGAATAGGGATAGCTTCCT	0.463			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			19	79					0	0	1	0	0
KIT	3815	broad.mit.edu	37	4	55564480	55564480	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55564480C>T	uc010igr.2	+	3	455	c.368C>T	c.(367-369)TCC>TTC	p.S123F	KIT_uc010igs.2_Missense_Mutation_p.S123F	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	123	Extracellular (Potential).|Ig-like C2-type 2.				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GTTGACCGCTCCTTGTATGGG	0.473		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				10	19					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55948773	55948773	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55948773C>T	uc003has.2	-	28	3994	c.3692G>A	c.(3691-3693)AGC>AAC	p.S1231N	KDR_uc003hat.1_Missense_Mutation_p.S1231N	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1231	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CACAGGCCGGCTCTTTCGCTT	0.358			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			20	112					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55953808	55953808	+	Missense_Mutation	SNP	G	A	A	rs11540507		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55953808G>A	uc003has.2	-	27	3930	c.3628C>T	c.(3628-3630)CCC>TCC	p.P1210S	KDR_uc003hat.1_Missense_Mutation_p.P1210S	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1210	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity	p.P1210L(1)		lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TGGAATTTGGGGTCACATACT	0.507			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			17	58					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55955574	55955574	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55955574C>T	uc003has.2	-	25	3673	c.3371G>A	c.(3370-3372)AGA>AAA	p.R1124K	KDR_uc003hat.1_Missense_Mutation_p.R1124K	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1124	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GGCCCTCATTCTAGTTCCTTC	0.398			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			21	44					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55956220	55956220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55956220C>T	uc003has.2	-	23	3397	c.3095G>A	c.(3094-3096)CGA>CAA	p.R1032Q	KDR_uc003hat.1_Missense_Mutation_p.R1032Q	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1032	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GAGGATATTTCGTGCCGCCAG	0.448			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			28	89					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55958861	55958861	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55958861C>T	uc003has.2	-	22	3294	c.2992G>A	c.(2992-2994)GAC>AAC	p.D998N	KDR_uc003hat.1_Missense_Mutation_p.D998N	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	998	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GTCAGGAAGTCCTTATACAGA	0.448			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			15	52					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55961752	55961753	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55961752_55961753GG>AA	uc003has.2	-	20	3110_3111	c.2808_2809CC>TT	c.(2806-2811)GTCCCC>GTTTCC	p.P937S	KDR_uc003hat.1_Missense_Mutation_p.P937S	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	937	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	ACCTTGTAGGGGACAAATTCAT	0.421			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			22	59					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55968569	55968569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55968569G>A	uc003has.2	-	14	2396	c.2094C>T	c.(2092-2094)ATC>ATT	p.I698I	KDR_uc003hat.1_Silent_p.I698I	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	698	Ig-like C2-type 7.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TAAACCACATGATCTGTGGAG	0.458			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			51	85					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55973911	55973911	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55973911C>T	uc003has.2	-	10	1707	c.1405G>A	c.(1405-1407)GAG>AAG	p.E469K	KDR_uc003hat.1_Missense_Mutation_p.E469K|KDR_uc011bzx.1_Missense_Mutation_p.E469K	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	469	Ig-like C2-type 5.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CACCTGGGCTCGTTGGCGCAC	0.512			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			27	66					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55976628	55976628	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55976628G>A	uc003has.2	-	9	1499	c.1197C>T	c.(1195-1197)ATC>ATT	p.I399I	KDR_uc003hat.1_Silent_p.I399I|KDR_uc011bzx.1_Silent_p.I399I	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	399	Ig-like C2-type 4.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GATTGGTAAGGATGACAGTGT	0.423			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			31	67					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55976645	55976645	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:55976645C>T	uc003has.2	-	9	1482	c.1180G>A	c.(1180-1182)GGA>AGA	p.G394R	KDR_uc003hat.1_Missense_Mutation_p.G394R|KDR_uc011bzx.1_Missense_Mutation_p.G394R	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	394	Ig-like C2-type 4.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GTGTAATTTCCTGTGTCTCTT	0.408			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			31	59					0	0	1	0	0
SRD5A3	79644	broad.mit.edu	37	4	56225558	56225558	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:56225558C>T	uc003hau.2	+	2	362	c.267C>T	c.(265-267)TTC>TTT	p.F89F		NM_024592	NP_078868	Q9H8P0	PORED_HUMAN	steroid 5 alpha-reductase 3	89	Helical; (Potential).				androgen biosynthetic process|dolichol metabolic process|dolichol-linked oligosaccharide biosynthetic process|polyprenol catabolic process	endoplasmic reticulum membrane|integral to membrane	3-oxo-5-alpha-steroid 4-dehydrogenase activity|oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor				0	all_cancers(7;0.0308)|all_lung(4;0.00195)|Lung NSC(11;0.00431)|all_epithelial(27;0.0425)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.0179)			GGAATGGCTTCCTGCTTTGGT	0.463													59	250					0	0	1	0	0
NMU	10874	broad.mit.edu	37	4	56471487	56471487	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:56471487G>A	uc003hbc.2	-	7	496	c.390C>T	c.(388-390)CTC>CTT	p.L130L	NMU_uc003hbd.1_Intron|NMU_uc010igv.1_RNA|NMU_uc010igw.1_Silent_p.L45L|NMU_uc010igx.1_Intron	NM_006681	NP_006672	P48645	NMU_HUMAN	neuromedin U precursor	130					neuropeptide signaling pathway	extracellular region					0	Lung NSC(11;0.00256)|all_epithelial(27;0.075)|Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.103)	LUSC - Lung squamous cell carcinoma(4;6.72e-08)|Lung(4;6.22e-07)|Epithelial(7;0.00559)	LUSC - Lung squamous cell carcinoma(721;0.0115)		GGTGAGGAACGAGCTGCAGCA	0.502													29	83					0	0	1	0	0
EXOC1	55763	broad.mit.edu	37	4	56768600	56768600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:56768600C>T	uc003hbe.1	+	18	2586	c.2428C>T	c.(2428-2430)CGT>TGT	p.R810C	EXOC1_uc003hbf.1_Missense_Mutation_p.R810C|EXOC1_uc003hbg.1_Missense_Mutation_p.R795C	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	810					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					ACAAGAACTTCGTAAAGTCAT	0.383													29	59					0	0	1	0	0
CEP135	9662	broad.mit.edu	37	4	56823451	56823451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:56823451C>T	uc003hbi.2	+	5	769	c.535C>T	c.(535-537)CCC>TCC	p.P179S	CEP135_uc003hbh.1_Missense_Mutation_p.P179S|CEP135_uc010igz.1_Missense_Mutation_p.P9S	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	179					centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					ACCGGTTCCTCCCTCTGAAGT	0.408													32	151					0	0	1	0	0
KIAA1211	57482	broad.mit.edu	37	4	57176870	57176870	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:57176870C>T	uc003hbk.2	+	6	715	c.324C>T	c.(322-324)CTC>CTT	p.L108L	KIAA1211_uc010iha.2_Silent_p.L101L|KIAA1211_uc011bzz.1_Silent_p.L18L|KIAA1211_uc003hbl.2_RNA|KIAA1211_uc003hbm.1_5'UTR	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	108										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					CTCTGAATCTCCCTGGAGCTG	0.423													27	64					0	0	1	0	0
KIAA1211	57482	broad.mit.edu	37	4	57180319	57180319	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:57180319C>T	uc003hbk.2	+	8	1042	c.651C>T	c.(649-651)TCC>TCT	p.S217S	KIAA1211_uc010iha.2_Silent_p.S210S|KIAA1211_uc011bzz.1_Silent_p.S127S|KIAA1211_uc003hbm.1_Silent_p.S103S	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	217	Glu-rich.									ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					CGCTGGATTCCGAGGAAGAGA	0.607													10	34					0	0	1	0	0
KIAA1211	57482	broad.mit.edu	37	4	57182007	57182007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:57182007G>A	uc003hbk.2	+	8	2730	c.2339G>A	c.(2338-2340)CGG>CAG	p.R780Q	KIAA1211_uc010iha.2_Missense_Mutation_p.R773Q|KIAA1211_uc011bzz.1_Missense_Mutation_p.R690Q|KIAA1211_uc003hbm.1_Missense_Mutation_p.R666Q	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	780										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					GAGATGCACCGGGAGCCCGCA	0.617													23	73					0	0	1	0	0
SRP72	6731	broad.mit.edu	37	4	57350913	57350913	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:57350913C>T	uc003hbv.2	+	10	1009	c.969C>T	c.(967-969)TGC>TGT	p.C323C	SRP72_uc010ihe.2_Silent_p.C262C|SRP72_uc003hbw.1_Silent_p.C84C	NM_006947	NP_008878	O76094	SRP72_HUMAN	signal recognition particle 72kDa	323					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|nucleolus|plasma membrane|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|signal recognition particle binding			ovary(1)	1	Glioma(25;0.08)|all_neural(26;0.101)					CTGAACAATGCCGCAAAATAT	0.413													33	144					0	0	1	0	0
REST	5978	broad.mit.edu	37	4	57796460	57796460	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:57796460C>T	uc003hch.2	+	4	1783	c.1436C>T	c.(1435-1437)CCT>CTT	p.P479L	REST_uc003hci.2_Missense_Mutation_p.P479L|REST_uc010ihf.2_Missense_Mutation_p.P153L	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	479	Lys-rich.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					GAGAAAAAGCCTTCTAATAAT	0.373													4	52					0	0	1	0	0
POLR2B	5431	broad.mit.edu	37	4	57860961	57860961	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:57860961C>T	uc003hcl.1	+	5	548	c.505C>T	c.(505-507)CGT>TGT	p.R169C	POLR2B_uc011cae.1_Missense_Mutation_p.R162C|POLR2B_uc011caf.1_Missense_Mutation_p.R94C	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	169					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					CTTGACAGATCGTGATCTTTG	0.338													41	78					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62542622	62542622	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:62542622C>T	uc010ihh.2	+	3	521	c.348C>T	c.(346-348)TAC>TAT	p.Y116Y	LPHN3_uc003hcq.3_Silent_p.Y116Y|LPHN3_uc010ihg.1_Silent_p.Y184Y	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	116	SUEL-type lectin.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						CCTATAAATACCTTGAAGTGC	0.398													47	194					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62599145	62599145	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:62599145C>T	uc010ihh.2	+	5	1241	c.1068C>T	c.(1066-1068)CCC>CCT	p.P356P	LPHN3_uc003hcq.3_Silent_p.P356P|LPHN3_uc010ihg.1_Silent_p.P424P|LPHN3_uc003hcs.1_Silent_p.P185P	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	356	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TGGATGTACCCTTTCCTAATT	0.388													7	36					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62758479	62758479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:62758479G>A	uc010ihh.2	+	7	1555	c.1382G>A	c.(1381-1383)GGA>GAA	p.G461E	LPHN3_uc003hcq.3_Missense_Mutation_p.G461E|LPHN3_uc003hcs.1_Missense_Mutation_p.G290E	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	461	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TCAGTGTCAGGAAGAAGAAAC	0.542													26	70					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62903542	62903542	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:62903542C>T	uc010ihh.2	+	21	3654	c.3481C>T	c.(3481-3483)CGA>TGA	p.R1161*	LPHN3_uc003hcq.3_Nonsense_Mutation_p.R1161*|LPHN3_uc003hct.2_Nonsense_Mutation_p.R545*	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	1139	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						ATCTGGTTCTCGAACTCCTGG	0.428													30	72					0	0	1	0	0
TECRL	253017	broad.mit.edu	37	4	65274970	65274970	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:65274970G>A	uc003hcv.2	-	1	209	c.100C>T	c.(100-102)CAC>TAC	p.H34Y	TECRL_uc003hcw.2_Missense_Mutation_p.H34Y	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	34					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						GACAAAAAGTGAAAATTTCTC	0.413													29	71					0	0	1	0	0
MIR1269	100302177	broad.mit.edu	37	4	67142634	67142634	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:67142634C>T	hsa-mir-1269|MI0006406	+			c.93C>T																				0						tactggcttccctggtctcca	0													6	36					0	0	1	0	0
STAP1	26228	broad.mit.edu	37	4	68424575	68424575	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68424575G>A	uc003hde.3	+	1	130	c.48G>A	c.(46-48)CAG>CAA	p.Q16Q	STAP1_uc003hdf.2_Silent_p.Q16Q	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	16					cellular membrane fusion|intracellular protein transport	cytoplasm					0						GGATCTTCCAGGAAAGGTTAA	0.423													50	121					0	0	1	0	0
STAP1	26228	broad.mit.edu	37	4	68424640	68424640	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68424640G>A	uc003hde.3	+	1	195	c.113G>A	c.(112-114)GGA>GAA	p.G38E	STAP1_uc003hdf.2_Missense_Mutation_p.G38E	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	38	PH.				cellular membrane fusion|intracellular protein transport	cytoplasm					0						AAGCGGTCAGGATACCGGGTG	0.378													48	113					0	0	1	0	0
GNRHR	2798	broad.mit.edu	37	4	68610308	68610309	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68610308_68610309CC>TT	uc003hdn.2	-	2	2470_2471	c.719_720GG>AA	c.(718-720)CGG>CAA	p.R240Q	LOC550112_uc003hdl.3_Intron|GNRHR_uc003hdm.2_Missense_Mutation_p.G198S	NM_000406	NP_000397	P30968	GNRHR_HUMAN	gonadotropin-releasing hormone receptor isoform	240	Cytoplasmic (Potential).				multicellular organismal development	integral to plasma membrane	gonadotropin-releasing hormone receptor activity			ovary(1)	1					Abarelix(DB00106)|Cetrorelix(DB00050)|Danazol(DB01406)|Gonadorelin(DB00644)|Leuprolide(DB00007)|Nafarelin(DB00666)	GATGAAGGACCCGTGTCAGGGT	0.411													14	65					0	0	1	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68688074	68688074	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68688074C>T	uc003hdq.2	-	10	1303	c.1238G>A	c.(1237-1239)AGG>AAG	p.R413K	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc003hdp.2_Missense_Mutation_p.R194K|TMPRSS11D_uc011caj.1_Missense_Mutation_p.R296K	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	413	Peptidase S1.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						AGTTTGTTGCCTAATCCAGTC	0.463													13	214					0	0	1	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68699036	68699036	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68699036G>A	uc003hdq.2	-	7	643	c.578C>T	c.(577-579)GCT>GTT	p.A193V	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc003hdp.2_5'UTR|TMPRSS11D_uc011caj.1_Missense_Mutation_p.A76V	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	193	Peptidase S1.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TCCCTCCTCAGCCTCAGTGCC	0.522													47	151					0	0	1	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68777148	68777148	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68777148C>T	uc003hdr.1	-	10	1299	c.1178G>A	c.(1177-1179)GGA>GAA	p.G393E	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.G390E	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	393	Peptidase S1.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						ACAGTTATCTCCCCAGCTTAC	0.388													31	102					0	0	1	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68780337	68780337	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68780337C>T	uc003hdr.1	-	9	1194	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.G355E	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	358	Peptidase S1.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TTCCATATATCCGGCACAGAA	0.368													53	129					0	0	1	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68810254	68810254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68810254C>T	uc003hdr.1	-	3	356	c.235G>A	c.(235-237)GAG>AAG	p.E79K	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.E79K	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	79	SEA.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TCGGTCGTCTCTCGTAAGTCC	0.328													45	111					0	0	1	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68810291	68810291	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68810291G>A	uc003hdr.1	-	3	319	c.198C>T	c.(196-198)TTC>TTT	p.F66F	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Silent_p.F66F	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	66	SEA.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TGCTTTGTCCGAAATTGTTAT	0.333													34	76					0	0	1	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68812269	68812269	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:68812269C>T	uc003hdr.1	-	2	153	c.32G>A	c.(31-33)CGA>CAA	p.R11Q	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.R11Q	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	11	Cytoplasmic (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						ATTTCTGCTTCGGGTGCCAAA	0.488													21	45					0	0	1	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69095033	69095033	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69095033C>T	uc003hdw.3	-	8	1024	c.888G>A	c.(886-888)ATG>ATA	p.M296I		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	296	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CTGAGAGCTTCATTTTGGCTT	0.378													37	80					0	0	1	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69095062	69095062	+	Missense_Mutation	SNP	G	A	A	rs150665678		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69095062G>A	uc003hdw.3	-	8	995	c.859C>T	c.(859-861)CGT>TGT	p.R287C		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	287	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CAAATCTTACGAATGTACTCT	0.358													31	84					0	0	1	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69095234	69095234	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69095234C>T	uc003hdw.3	-	8	823	c.687G>A	c.(685-687)AAG>AAA	p.K229K		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	229	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						AATTATTTTTCCTAGAGGACA	0.323													16	56					0	0	1	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69107480	69107480	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69107480C>T	uc003hdw.3	-	2	187	c.51G>A	c.(49-51)ACG>ACA	p.T17T		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	17	Cytoplasmic (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						AAATAAAGATCGTAGTCCATA	0.388													36	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	69327560	69327560	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69327560G>A	uc003hdz.3	+	2	97	c.33G>A	c.(31-33)AGG>AGA	p.R11R		NM_014058	NP_054777			transmembrane protease, serine 11E																		TGAGGGCTAGGAAAAGAGTTT	0.428													143	347					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	69334630	69334630	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69334630G>A	uc003hdz.3	+	4	356	c.292G>A	c.(292-294)GAA>AAA	p.E98K		NM_014058	NP_054777			transmembrane protease, serine 11E																		TCCATTAAGGGAAGAATTTGT	0.294													37	192					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	69337234	69337234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69337234C>T	uc003hdz.3	+	5	447	c.383C>T	c.(382-384)ACT>ATT	p.T128I		NM_014058	NP_054777			transmembrane protease, serine 11E																		TTTCACTCTACTGAGGATCCT	0.348													87	234					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	69344659	69344659	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69344659C>T	uc003hdz.3	+	9	1124	c.1060C>T	c.(1060-1062)CCT>TCT	p.P354S		NM_014058	NP_054777			transmembrane protease, serine 11E																		CGCCATAACTCCTAGAATGTT	0.383													50	185					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519762	69519762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69519762C>T	uc011cal.1	-	5	1344	c.1306G>A	c.(1306-1308)GAC>AAC	p.D436N		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	436					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						CACACAGGGTCATTAATGACT	0.373													69	165					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519885	69519885	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69519885G>A	uc011cal.1	-	5	1221	c.1183C>T	c.(1183-1185)CCC>TCC	p.P395S		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	395					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						GCAAACAAGGGAATGCCCACC	0.463													27	254					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519925	69519925	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69519925G>A	uc011cal.1	-	5	1181	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	381					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TCGCCTCATAGATGCCATTGG	0.413													62	224					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69535765	69535765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69535765G>A	uc011cal.1	-	1	610	c.572C>T	c.(571-573)CCT>CTT	p.P191L		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	191					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						ATAGGAAGGAGGGAACAGAAA	0.368													52	216					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69535791	69535791	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69535791C>T	uc011cal.1	-	1	584	c.546G>A	c.(544-546)GAG>GAA	p.E182E		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	182					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						CACCATTCTTCTCAAATGTGT	0.398													86	214					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69536064	69536064	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69536064C>T	uc011cal.1	-	1	311	c.273G>A	c.(271-273)CTG>CTA	p.L91L		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	91					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						CGAGAATTTTCAGAAGAGAAT	0.294													43	105					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69536328	69536328	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69536328C>T	uc011cal.1	-	1	47	c.9G>A	c.(7-9)CTG>CTA	p.L3L		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	3					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						ACGTCCATTTCAGAGACATCC	0.398													88	342					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69682029	69682029	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69682029G>A	uc003hee.2	+	1	317	c.292G>A	c.(292-294)GAA>AAA	p.E98K	UGT2B10_uc011cam.1_Missense_Mutation_p.E98K	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	98					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GAGATTGTCAGAAATTCAAAA	0.313													37	94					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69682041	69682041	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69682041G>A	uc003hee.2	+	1	329	c.304G>A	c.(304-306)GAT>AAT	p.D102N	UGT2B10_uc011cam.1_Missense_Mutation_p.D102N	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	102					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AATTCAAAAAGATACATTTTG	0.289													28	97					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69682301	69682301	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69682301C>T	uc003hee.2	+	1	589	c.564C>T	c.(562-564)TTC>TTT	p.F188F	UGT2B10_uc011cam.1_Intron	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	188					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GATTTATTTTCCCTCCTTCCT	0.398													35	120					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69683801	69683801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69683801G>A	uc003hee.2	+	2	798	c.773G>A	c.(772-774)CGA>CAA	p.R258Q	UGT2B10_uc011cam.1_Missense_Mutation_p.R174Q	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	258					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TGGCTTATGCGAAACTCCTGG	0.383													71	128					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69683824	69683824	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69683824C>T	uc003hee.2	+	2	821	c.796C>T	c.(796-798)CCT>TCT	p.P266S	UGT2B10_uc011cam.1_Missense_Mutation_p.P182S	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	266					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TTTTAAATTTCCTCATCCATT	0.383													76	205					0	0	1	0	0
UGT2A3	79799	broad.mit.edu	37	4	69796941	69796941	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69796941C>T	uc003hef.2	-	4	1047	c.1016G>A	c.(1015-1017)GGA>GAA	p.G339E	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	339	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TGGTTTTTTTCCTTTGTACCT	0.358													24	51					0	0	1	0	0
UGT2A3	79799	broad.mit.edu	37	4	69798419	69798419	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69798419C>T	uc003hef.2	-	3	954	c.923G>A	c.(922-924)GGG>GAG	p.G308E	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	308	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AAACAGTGACCCCAGAGAAAA	0.388													52	200					0	0	1	0	0
UGT2A3	79799	broad.mit.edu	37	4	69816835	69816835	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69816835G>A	uc003hef.2	-	1	675	c.644C>T	c.(643-645)TCA>TTA	p.S215L	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	215	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GAACAAAACTGAAAGCATTGA	0.358													9	47					0	0	1	0	0
UGT2A3	79799	broad.mit.edu	37	4	69816910	69816910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69816910G>A	uc003hef.2	-	1	600	c.569C>T	c.(568-570)TCC>TTC	p.S190F	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	190	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AGGTACATAGGAAAGTGGAGC	0.438													21	48					0	0	1	0	0
UGT2A3	79799	broad.mit.edu	37	4	69817226	69817226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69817226C>T	uc003hef.2	-	1	284	c.253G>A	c.(253-255)GAA>AAA	p.E85K	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	85	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TCATTTTCTTCTGTTCTGTCC	0.368													22	67					0	0	1	0	0
UGT2A3	79799	broad.mit.edu	37	4	69817442	69817442	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69817442G>A	uc003hef.2	-	1	68	c.37C>T	c.(37-39)CTG>TTG	p.L13L	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	13						integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AAGAGCTGCAGGAGCAGAAAT	0.468													13	44					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885391	69885391	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69885391C>T	uc011cao.1	-	4	734	c.598G>A	c.(598-600)GAA>AAA	p.E200K	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	237					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CCTAAAACTTCACTGTAAAAG	0.338													10	38					0	0	1	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962862	69962862	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69962862G>A	uc003heg.3	+	1	670	c.624G>A	c.(622-624)ATG>ATA	p.M208I	UGT2B7_uc010ihq.2_Missense_Mutation_p.M208I	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	208					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TGACTTTCATGGAGAGGGTAA	0.358													27	88					0	0	1	0	0
UGT2B7	7364	broad.mit.edu	37	4	69972933	69972933	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:69972933G>A	uc003heg.3	+	4	1089	c.1043G>A	c.(1042-1044)GGT>GAT	p.G348D	UGT2B7_uc010ihq.2_Missense_Mutation_p.G348D	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	348					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GATACCTTAGGTCTCAATACT	0.358													30	117					0	0	1	0	0
UGT2B11	10720	broad.mit.edu	37	4	70079799	70079799	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70079799C>T	uc003heh.2	-	1	651	c.642G>A	c.(640-642)ATG>ATA	p.M214I	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	214					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						GCACATAGATCATATTTTTTA	0.343													23	57					0	0	1	0	0
UGT2B11	10720	broad.mit.edu	37	4	70079869	70079869	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70079869G>A	uc003heh.2	-	1	581	c.572C>T	c.(571-573)CCT>CTT	p.P191L	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	191					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TATGTAGGAAGGAGGGAAAAT	0.403													14	114					0	0	1	0	0
UGT2B11	10720	broad.mit.edu	37	4	70080324	70080324	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70080324C>T	uc003heh.2	-	1	126	c.117G>A	c.(115-117)ATG>ATA	p.M39I	uc003hei.1_RNA	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	39					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						GGATTGTCTTCATATTCATCC	0.443													99	259					0	0	1	0	0
UGT2B28	54490	broad.mit.edu	37	4	70156430	70156430	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70156430C>T	uc003hej.2	+	5	1213	c.1211C>T	c.(1210-1212)GCT>GTT	p.A404V	UGT2B28_uc010ihr.2_Intron	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	404					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GATAACATTGCTCACATGAAG	0.453													21	85					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70346365	70346365	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70346365C>T	uc003hek.3	-	6	1621	c.1574G>A	c.(1573-1575)GGG>GAG	p.G525E	UGT2B4_uc011cap.1_Missense_Mutation_p.G389E|UGT2B4_uc003hel.3_3'UTR	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	525					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						ATCTCTTTTCCCCTTCTTTCC	0.408													37	86					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70355236	70355236	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70355236G>A	uc003hek.3	-	3	970	c.923C>T	c.(922-924)TCT>TTT	p.S308F	UGT2B4_uc011cap.1_Missense_Mutation_p.S172F|UGT2B4_uc003hel.3_Missense_Mutation_p.S308F	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	308					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						CGACCCCAGAGAAAACACCAC	0.393													83	209					0	0	1	0	0
UGT2A1	10941	broad.mit.edu	37	4	70455136	70455136	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70455136G>A	uc003hem.3	-	6	1601	c.1538C>T	c.(1537-1539)TCC>TTC	p.S513F	UGT2A1_uc011caq.1_Missense_Mutation_p.S679F|UGT2A1_uc010ihu.2_Missense_Mutation_p.S513F|UGT2A1_uc010iht.2_Missense_Mutation_p.S469F|UGT2A1_uc010ihs.2_Missense_Mutation_p.S514F	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	513	Cytoplasmic (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						TTTTTGACAGGAAAACAAACA	0.353													23	62					0	0	1	0	0
SULT1B1	27284	broad.mit.edu	37	4	70620411	70620411	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70620411G>A	uc003hen.2	-	3	552	c.254C>T	c.(253-255)ACT>ATT	p.T85I		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	85					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						TCCAGGGAGAGTCATTTCCAA	0.303													46	133					0	0	1	0	0
SULT1E1	6783	broad.mit.edu	37	4	70713498	70713498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70713498G>A	uc003heo.2	-	6	622	c.509C>T	c.(508-510)TCC>TTC	p.S170F		NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	170					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						TTTATACCAGGAACCATAAGG	0.368													25	83					0	0	1	0	0
SULT1E1	6783	broad.mit.edu	37	4	70721023	70721023	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70721023C>T	uc003heo.2	-	3	380	c.267G>A	c.(265-267)ATG>ATA	p.M89I	SULT1E1_uc010ihv.1_Missense_Mutation_p.M89I	NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	89					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						CGTTACCATTCATGAGGTTTT	0.318													11	41					0	0	1	0	0
CSN1S1	1446	broad.mit.edu	37	4	70810643	70810643	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70810643C>T	uc003hep.1	+	15	527	c.478C>T	c.(478-480)CCT>TCT	p.P160S	CSN1S1_uc003heq.1_Missense_Mutation_p.P151S|CSN1S1_uc003her.1_Missense_Mutation_p.P152S	NM_001890	NP_001881	P47710	CASA1_HUMAN	casein alpha s1 isoform 1	160						extracellular region	protein binding|transporter activity				0						GCAGTATGTTCCTTTCCCACC	0.408													84	226					0	0	1	0	0
CSN1S1	1446	broad.mit.edu	37	4	70810661	70810661	+	Missense_Mutation	SNP	G	A	A	rs149927680	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70810661G>A	uc003hep.1	+	15	545	c.496G>A	c.(496-498)GAC>AAC	p.D166N	CSN1S1_uc003heq.1_Missense_Mutation_p.D157N|CSN1S1_uc003her.1_Missense_Mutation_p.D158N	NM_001890	NP_001881	P47710	CASA1_HUMAN	casein alpha s1 isoform 1	166						extracellular region	protein binding|transporter activity				0						ACCGTTTTCCGACATCTCCAA	0.418													15	224					0	0	1	0	0
CSN2	1447	broad.mit.edu	37	4	70823435	70823435	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:70823435G>A	uc003hes.3	-	5	245	c.232C>T	c.(232-234)CCA>TCA	p.P78S	CSN2_uc003het.3_Missense_Mutation_p.P77S	NM_001891	NP_001882	P05814	CASB_HUMAN	casein beta precursor	78					calcium ion transport	extracellular region	calcium ion binding|enzyme inhibitor activity|transporter activity				0						ATGTTTTGTGGAAGAAAACCA	0.468													29	111					0	0	1	0	0
ODAM	54959	broad.mit.edu	37	4	71063012	71063013	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71063012_71063013GG>AA	uc003hfc.2	+	3	132_133	c.115_116GG>AA	c.(115-117)GGT>AAT	p.G39N		NM_017855	NP_060325	A1E959	ODAM_HUMAN	odontogenic ameloblast-associated protein	39					biomineral tissue development|odontogenesis of dentine-containing tooth	fibril				ovary(3)|large_intestine(1)	4						TCTTAATAATGGTCAACTTTTG	0.277													23	87					0	0	1	0	0
ODAM	54959	broad.mit.edu	37	4	71068536	71068536	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71068536G>A	uc003hfc.2	+	9	729	c.712G>A	c.(712-714)GGA>AGA	p.G238R		NM_017855	NP_060325	A1E959	ODAM_HUMAN	odontogenic ameloblast-associated protein	238					biomineral tissue development|odontogenesis of dentine-containing tooth	fibril				ovary(3)|large_intestine(1)	4						TGACAGTGCAGGAGTTTTCAT	0.413													24	78					0	0	1	0	0
C4orf35	85438	broad.mit.edu	37	4	71201257	71201257	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71201257G>A	uc003hff.2	+	1	587	c.501G>A	c.(499-501)AAG>AAA	p.K167K		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	167						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				GCACACTAAAGGACAGCAGTG	0.433													16	49					0	0	1	0	0
SMR3B	10879	broad.mit.edu	37	4	71255522	71255522	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71255522C>T	uc011cas.1	+	3	278	c.197C>T	c.(196-198)CCC>CTC	p.P66L	SMR3B_uc003hfh.2_Missense_Mutation_p.P66L	NM_006685	NP_006676	P02814	SMR3B_HUMAN	submaxillary gland androgen regulated protein 3	66	Poly-Pro.|Pro-rich.					extracellular space				skin(1)	1		all_hematologic(202;0.196)				CCTCCCGCACCCTATGGTCCA	0.597													47	117					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71265027	71265027	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71265027C>T	uc003hfi.2	+	2	199	c.25C>T	c.(25-27)CTG>TTG	p.L9L		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	9					regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				CTTCTTGGGCCTGTTGGCTCT	0.318													4	46					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71275274	71275274	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71275274C>T	uc003hfi.2	+	3	403	c.229C>T	c.(229-231)CGA>TGA	p.R77*		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	77	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				TTCTTTCTCTCGATTTAGCCA	0.458													76	204					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71275341	71275341	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71275341T>A	uc003hfi.2	+	3	470	c.296T>A	c.(295-297)TTT>TAT	p.F99Y		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	99	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				CCTCGACTCTTTCCGGGTTAT	0.418													70	180					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71275758	71275758	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71275758G>A	uc003hfi.2	+	3	887	c.713G>A	c.(712-714)AGT>AAT	p.S238N		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	238					regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				GCCTTTAAAAGTTTTTGGCAA	0.368													25	68					0	0	1	0	0
AMTN	401138	broad.mit.edu	37	4	71388496	71388496	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71388496C>T	uc003hfk.1	+	3	168	c.79C>T	c.(79-81)CCT>TCT	p.P27S	AMTN_uc010ihy.1_Missense_Mutation_p.P26S	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	27					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			TTTGGGACTCCCTCCCACAAA	0.423													70	237					0	0	1	0	0
AMTN	401138	broad.mit.edu	37	4	71389609	71389609	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71389609C>T	uc003hfk.1	+	4	252	c.163C>T	c.(163-165)CCA>TCA	p.P55S	AMTN_uc010ihy.1_Missense_Mutation_p.P54S	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	55					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			AAGTCTGATACCATTAACACA	0.388													52	108					0	0	1	0	0
AMTN	401138	broad.mit.edu	37	4	71396858	71396858	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71396858C>T	uc003hfk.1	+	8	549	c.460C>T	c.(460-462)CCA>TCA	p.P154S	AMTN_uc010ihy.1_Missense_Mutation_p.P153S	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	154					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			TGGAAGCCTTCCAGCAGGAGG	0.592													22	43					0	0	1	0	0
AMBN	258	broad.mit.edu	37	4	71465309	71465309	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71465309C>T	uc003hfl.2	+	5	315	c.240C>T	c.(238-240)CTC>CTT	p.L80L		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	80					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			ACGGTCTCCTCCCACCACATT	0.373													24	61					0	0	1	0	0
AMBN	258	broad.mit.edu	37	4	71469630	71469630	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71469630G>A	uc003hfl.2	+	12	865	c.790G>A	c.(790-792)GAA>AAA	p.E264K		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	264					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			GAGTTCAGAAGAAGTGGCAGT	0.423													15	49					0	0	1	0	0
AMBN	258	broad.mit.edu	37	4	71471960	71471960	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71471960G>A	uc003hfl.2	+	13	932	c.857G>A	c.(856-858)AGG>AAG	p.R286K		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	286					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			GGAGGCATGAGGCCCGGCTTT	0.537													23	70					0	0	1	0	0
AMBN	258	broad.mit.edu	37	4	71472148	71472148	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71472148C>T	uc003hfl.2	+	13	1120	c.1045C>T	c.(1045-1047)CCC>TCC	p.P349S		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	349					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			AGAACCTGCTCCCCACGCAGG	0.592													7	40					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71509082	71509082	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71509082G>A	uc011caw.1	+	9	2220	c.1939G>A	c.(1939-1941)GAG>AAG	p.E647K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	647					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AGACCAGAAGGAGATAGTCCC	0.443													49	119					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71509295	71509295	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71509295G>A	uc011caw.1	+	9	2433	c.2152G>A	c.(2152-2154)GAA>AAA	p.E718K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	718					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			TTATTACAGTGAATTTTACCC	0.388													47	92					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71509476	71509476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71509476G>A	uc011caw.1	+	9	2614	c.2333G>A	c.(2332-2334)AGA>AAA	p.R778K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	778					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CAGAGAGAAAGAAGGCCGTAT	0.473													25	72					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71509611	71509611	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71509611G>A	uc011caw.1	+	9	2749	c.2468G>A	c.(2467-2469)TGG>TAG	p.W823*		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	823					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AATCCAATATGGCATGAAGGT	0.438													20	64					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71510219	71510219	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71510219G>A	uc011caw.1	+	9	3357	c.3076G>A	c.(3076-3078)GAA>AAA	p.E1026K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	1026					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			TACACCTGATGAAGGCTCCAA	0.433													20	93					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71510360	71510360	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71510360C>T	uc011caw.1	+	9	3498	c.3217C>T	c.(3217-3219)CCA>TCA	p.P1073S		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	1073					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CACCGGAACTCCATCTAGCGA	0.433													21	95					0	0	1	0	0
IGJ	3512	broad.mit.edu	37	4	71527857	71527857	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71527857G>A	uc003hfn.3	-	2	281	c.140C>T	c.(139-141)TCT>TTT	p.S47F	IGJ_uc010ihz.2_Missense_Mutation_p.S63F	NM_144646	NP_653247	P01591	IGJ_HUMAN	immunoglobulin J chain	47					immune response	extracellular region	antigen binding				0			Lung(101;0.235)			ATCTTCGGAAGAACGGATGAT	0.388													20	104					0	0	1	0	0
IGJ	3512	broad.mit.edu	37	4	71532205	71532205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:71532205C>T	uc003hfn.3	-	1	144	c.3G>A	c.(1-3)ATG>ATA	p.M1I	IGJ_uc010ihz.2_Missense_Mutation_p.M1I	NM_144646	NP_653247	P01591	IGJ_HUMAN	immunoglobulin J chain	1					immune response	extracellular region	antigen binding				0			Lung(101;0.235)			AATGGTTCTTCATCTTGACTT	0.388													25	47					0	0	1	0	0
SLC4A4	8671	broad.mit.edu	37	4	72338444	72338444	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:72338444C>T	uc003hfy.2	+	14	1777	c.1660C>T	c.(1660-1662)CGC>TGC	p.R554C	SLC4A4_uc010iic.2_Missense_Mutation_p.R554C|SLC4A4_uc010iib.2_Missense_Mutation_p.R554C|SLC4A4_uc003hfz.2_Missense_Mutation_p.R554C|SLC4A4_uc003hgc.3_Missense_Mutation_p.R510C|SLC4A4_uc010iid.2_Intron|SLC4A4_uc003hga.2_Missense_Mutation_p.R432C|SLC4A4_uc003hgb.3_Missense_Mutation_p.R510C	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	554	Cytoplasmic (Potential).		R -> H (in pRTA-OA; mistargeting and altered function).	R->D: Prevents membrane targeting.		basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TTTGGAGTTTCGCCTTTGGAT	0.408													94	223					0	0	1	0	0
SLC4A4	8671	broad.mit.edu	37	4	72399970	72399970	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:72399970C>T	uc003hfy.2	+	18	2424	c.2307C>T	c.(2305-2307)TTC>TTT	p.F769F	SLC4A4_uc010iic.2_Silent_p.F769F|SLC4A4_uc010iib.2_Silent_p.F769F|SLC4A4_uc003hfz.2_Silent_p.F769F|SLC4A4_uc003hgc.3_Silent_p.F725F|SLC4A4_uc010iid.2_5'UTR	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	769	Interaction with CA4.|Extracellular (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			GAGGTTGGTTCGTTCCACCGT	0.423													19	47					0	0	1	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013021	73013021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:73013021C>T	uc003hgg.2	+	4	1159	c.1061C>T	c.(1060-1062)CCT>CTT	p.P354L	NPFFR2_uc010iig.1_Missense_Mutation_p.P136L|NPFFR2_uc003hgi.2_Missense_Mutation_p.P255L|NPFFR2_uc003hgh.2_Missense_Mutation_p.P252L|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	354	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			GCTGCAGTTCCTCACACAGGC	0.498													28	64					0	0	1	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013235	73013235	+	Silent	SNP	C	T	T	rs145038184	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:73013235C>T	uc003hgg.2	+	4	1373	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F	NPFFR2_uc010iig.1_Silent_p.F207F|NPFFR2_uc003hgi.2_Silent_p.F326F|NPFFR2_uc003hgh.2_Silent_p.F323F|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	425	Helical; Name=7; (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			GGCTGGCATTCGGCAACAGCA	0.463													43	100					0	0	1	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013479	73013479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:73013479G>A	uc003hgg.2	+	4	1617	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	NPFFR2_uc010iig.1_Missense_Mutation_p.E289K|NPFFR2_uc003hgi.2_Missense_Mutation_p.E408K|NPFFR2_uc003hgh.2_Missense_Mutation_p.E405K|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	507	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			ACCCCAACAGGAATTAGTGAT	0.348													22	61					0	0	1	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73149058	73149058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:73149058C>T	uc003hgk.1	-	22	3450	c.3413G>A	c.(3412-3414)GGA>GAA	p.G1138E		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1138					collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AGTCTTACTTCCTGCTTGCTG	0.512													47	88					0	0	1	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73161477	73161477	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:73161477G>A	uc003hgk.1	-	19	2654	c.2617C>T	c.(2617-2619)CGT>TGT	p.R873C		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	873	TSP type-1 2.				collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CTTTTCCTACGGCATCCATAT	0.368													28	89					0	0	1	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73179425	73179425	+	Missense_Mutation	SNP	G	A	A	rs150168072		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:73179425G>A	uc003hgk.1	-	12	1751	c.1714C>T	c.(1714-1716)CGT>TGT	p.R572C	ADAMTS3_uc003hgl.2_5'Flank	NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	572	TSP type-1 1.				collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GTTCTGAAACGAACACCAGTT	0.393													13	43					0	0	1	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73280619	73280619	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:73280619C>T	uc003hgk.1	-	4	611	c.574G>A	c.(574-576)GAA>AAA	p.E192K		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	192					collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CCTTTTTCTTCCTCCATCTGT	0.388													36	85					0	0	1	0	0
ANKRD17	26057	broad.mit.edu	37	4	73957010	73957010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:73957010G>A	uc003hgp.2	-	29	6452	c.6335C>T	c.(6334-6336)CCG>CTG	p.P2112L	ANKRD17_uc003hgo.2_Missense_Mutation_p.P1999L|ANKRD17_uc003hgq.2_Missense_Mutation_p.P1861L|ANKRD17_uc003hgr.2_Missense_Mutation_p.P2111L	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2112					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AACAGATCCCGGAGGTTGTTG	0.483													60	112					0	0	1	0	0
ANKRD17	26057	broad.mit.edu	37	4	73964105	73964105	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:73964105C>T	uc003hgp.2	-	26	4823	c.4706G>A	c.(4705-4707)AGG>AAG	p.R1569K	ANKRD17_uc003hgo.2_Missense_Mutation_p.R1456K|ANKRD17_uc003hgq.2_Missense_Mutation_p.R1318K|ANKRD17_uc003hgr.2_Missense_Mutation_p.R1568K	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	1569					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CCTGTTTTTCCTCTTTGAACT	0.373													43	106					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74274418	74274418	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74274418C>T	uc003hgs.3	+	4	451	c.378C>T	c.(376-378)TTC>TTT	p.F126F	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_Intron|ALB_uc003hgt.3_Silent_p.F126F|ALB_uc010iii.2_Intron|ALB_uc003hgu.3_Intron|ALB_uc003hgv.3_Intron|ALB_uc011cbf.1_Silent_p.F16F|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'Flank	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	126	Albumin 1.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	ATGAATGCTTCTTGCAACACA	0.423													20	36					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74285296	74285296	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74285296C>T	uc003hgs.3	+	13	1798	c.1725C>T	c.(1723-1725)TTC>TTT	p.F575F	ALB_uc003hgw.3_Silent_p.F383F|ALB_uc011cbe.1_Silent_p.F254F|ALB_uc003hgt.3_Silent_p.F575F|ALB_uc010iii.2_Silent_p.F460F|ALB_uc003hgu.3_Silent_p.F425F|ALB_uc003hgv.3_Silent_p.F254F|ALB_uc011cbf.1_Silent_p.F465F|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_Silent_p.F254F	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	575	Albumin 3.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	TGGATGATTTCGCAGCTTTTG	0.413													29	75					0	0	1	0	0
AFP	174	broad.mit.edu	37	4	74308080	74308080	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74308080C>T	uc003hgz.1	+	5	597	c.550C>T	c.(550-552)CGC>TGC	p.R184C	AFP_uc003hha.1_Missense_Mutation_p.R184C|AFP_uc011cbg.1_5'UTR	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	184	Albumin 1.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TTGGGCTGCTCGCTATGACAA	0.373									Alpha-Fetoprotein_Hereditary_Persistence_of				13	63					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74354374	74354374	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74354374C>T	uc003hhb.2	+	7	772	c.741C>T	c.(739-741)TTC>TTT	p.F247F		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	247	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GTCAAAAATTCCCCAAGATTG	0.363													23	84					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74357718	74357718	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74357718G>A	uc003hhb.2	+	8	1004	c.973G>A	c.(973-975)GAT>AAT	p.D325N		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	325	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TAGACCAAAGGATTTATCTCT	0.378													36	92					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74365888	74365888	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74365888C>T	uc003hhb.2	+	12	1621	c.1590C>T	c.(1588-1590)ACC>ACT	p.T530T		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	530	Albumin 3.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ATTTATTTACCTTTCACGCAG	0.393													7	60					0	0	1	0	0
RASSF6	166824	broad.mit.edu	37	4	74477528	74477528	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74477528G>A	uc003hhd.1	-	2	204	c.81C>T	c.(79-81)CTC>CTT	p.L27L	RASSF6_uc003hhc.1_5'UTR|RASSF6_uc010iik.1_5'UTR|RASSF6_uc010iil.1_Intron	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	27					apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			CCTCCTTTTTGAGATGGTCTG	0.333													45	103					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	74713720	74713720	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74713720G>A	uc011cbi.1	+	1	138	c.138G>A	c.(136-138)GGG>GGA	p.G46G		NM_001144760	NP_001138232			pro-platelet basic protein-like 1																		GAAACTTAGGGAAAAGCAAAG	0.552													3	13					0	0	1	0	0
PF4	5196	broad.mit.edu	37	4	74846987	74846987	+	Silent	SNP	C	T	T	rs4694		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74846987C>T	uc003hhi.2	-	3	285	c.240G>A	c.(238-240)AGG>AGA	p.R80R		NM_002619	NP_002610	P02776	PLF4_HUMAN	platelet factor 4 (chemokine (C-X-C motif)	80					cytokine-mediated signaling pathway|immune response|leukocyte chemotaxis|negative regulation of angiogenesis|negative regulation of apoptosis|negative regulation of cytolysis|negative regulation of megakaryocyte differentiation|negative regulation of MHC class II biosynthetic process|platelet activation|platelet degranulation|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of tumor necrosis factor production	extracellular space|platelet alpha granule lumen	chemokine activity|heparin binding				0	Breast(15;0.00136)		all cancers(17;0.0034)|Lung(101;0.196)		Drotrecogin alfa(DB00055)	AGCAAATTTTCCTTCCATTCT	0.458													20	55					0	0	1	0	0
CXCL5	6374	broad.mit.edu	37	4	74863807	74863807	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:74863807G>A	uc003hhk.2	-	3	366	c.248C>T	c.(247-249)TCC>TTC	p.S83F		NM_002994	NP_002985	P42830	CXCL5_HUMAN	chemokine (C-X-C motif) ligand 5 precursor	83					cell-cell signaling|chemotaxis|immune response|positive regulation of cell proliferation|signal transduction	extracellular space	chemokine activity				0	Breast(15;0.00136)		all cancers(17;0.00273)|Lung(101;0.196)			GTTCTTCAGGGAGGCTCTGAA	0.453													29	93					0	0	1	0	0
MTHFD2L	441024	broad.mit.edu	37	4	75167517	75167517	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:75167517C>T	uc011cbk.1	+	8	1062	c.1035C>T	c.(1033-1035)ATC>ATT	p.I345I	MTHFD2L_uc003hhu.2_RNA|uc003hhv.1_Intron	NM_001144978	NP_001138450	Q9H903	MTD2L_HUMAN	methylenetetrahydrofolate dehydrogenase 2-like	287					folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process		binding|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2			all cancers(17;0.0101)|Lung(101;0.196)			CTAAAAAAATCATTTACTAGA	0.363													11	41					0	0	1	0	0
AREG	374	broad.mit.edu	37	4	75312457	75312457	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:75312457G>A	uc011cbl.1	+	2	478	c.268G>A	c.(268-270)GAA>AAA	p.E90K		NM_001657	NP_001648	P15514	AREG_HUMAN	amphiregulin preproprotein	90					cell proliferation|cell-cell signaling|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|positive regulation of DNA replication	cell surface|extracellular space|integral to membrane	cytokine activity|growth factor activity				0			Lung(101;0.196)			GTATGATAACGAACCACAAAT	0.448													35	80					0	0	1	0	0
PARM1	25849	broad.mit.edu	37	4	75937790	75937790	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:75937790C>T	uc003hih.1	+	2	439	c.199C>T	c.(199-201)CCA>TCA	p.P67S		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	67	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						CTCGGTGCTCCCAGTTACAGC	0.517													19	72					0	0	1	0	0
C4orf26	152816	broad.mit.edu	37	4	76489459	76489459	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76489459C>T	uc003hip.1	+	2	238	c.203C>T	c.(202-204)CCC>CTC	p.P68L	C4orf26_uc011cbn.1_RNA|C4orf26_uc011cbo.1_Missense_Mutation_p.P83S	NM_178497	NP_848592	Q17RF5	CD026_HUMAN	hypothetical protein LOC152816 precursor	68						extracellular region					0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			ACAAAGACACCCAGGTGTCCC	0.522													31	89					0	0	1	0	0
C4orf26	152816	broad.mit.edu	37	4	76489530	76489530	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76489530C>T	uc003hip.1	+	2	309	c.274C>T	c.(274-276)CCT>TCT	p.P92S	C4orf26_uc011cbn.1_Intron|C4orf26_uc011cbo.1_Silent_p.S106S	NM_178497	NP_848592	Q17RF5	CD026_HUMAN	hypothetical protein LOC152816 precursor	92						extracellular region					0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			ACCTTTCGTCCCTTCAAGGTG	0.478													66	178					0	0	1	0	0
CDKL2	8999	broad.mit.edu	37	4	76530724	76530724	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76530724G>A	uc003hiq.2	-	5	1162	c.637C>T	c.(637-639)CAT>TAT	p.H213Y	CDKL2_uc011cbp.1_Missense_Mutation_p.H213Y|CDKL2_uc010iix.1_Intron	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	213	Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			ATCATAATATGATATAGCTGA	0.368													5	68					0	0	1	0	0
G3BP2	9908	broad.mit.edu	37	4	76571592	76571592	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76571592C>T	uc003hir.2	-	11	1271	c.1106G>A	c.(1105-1107)GGA>GAA	p.G369E	G3BP2_uc003his.2_Missense_Mutation_p.G369E|G3BP2_uc003hit.2_Missense_Mutation_p.G336E	NM_012297	NP_036429	Q9UN86	G3BP2_HUMAN	Ras-GTPase activating protein SH3 domain-binding	369	RRM.				cytoplasmic sequestering of NF-kappaB|mRNA transport|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	GTPase activator activity|nucleotide binding|receptor signaling complex scaffold activity|RNA binding			breast(2)|central_nervous_system(1)	3			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TGGAAGCTTTCCCCCAACACC	0.348													68	176					0	0	1	0	0
USO1	8615	broad.mit.edu	37	4	76650013	76650013	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76650013C>A	uc003hiu.2	+	1	185	c.10C>A	c.(10-12)CTC>ATC	p.L4I	uc010iiy.2_5'Flank	NM_003715	NP_003706	O60763	USO1_HUMAN	USO1 homolog, vesicle docking protein	4	Globular head.				intracellular protein transport|vesicle fusion with Golgi apparatus	cytosol|Golgi membrane	protein binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GATGAATTTCCTCCGCGGGGT	0.642													6	41					0.00307968	0.0030817	1	1	0
USO1	8615	broad.mit.edu	37	4	76695903	76695903	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76695903C>T	uc003hiu.2	+	7	805	c.630C>T	c.(628-630)TTC>TTT	p.F210F	USO1_uc003hiv.2_Silent_p.F45F|USO1_uc003hiw.2_Silent_p.F45F	NM_003715	NP_003706	O60763	USO1_HUMAN	USO1 homolog, vesicle docking protein	210	ARM 4.|Globular head.				intracellular protein transport|vesicle fusion with Golgi apparatus	cytosol|Golgi membrane	protein binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AAAATGCTTTCGAGAGACTAC	0.383													39	108					0	0	1	0	0
PPEF2	5470	broad.mit.edu	37	4	76787359	76787359	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76787359C>T	uc003hix.2	-	15	2260	c.1903G>A	c.(1903-1905)GAA>AAA	p.E635K	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_3'UTR	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	635					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			CTCAGTTGTTCCTTGGCCAAG	0.498													56	120					0	0	1	0	0
PPEF2	5470	broad.mit.edu	37	4	76797772	76797772	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76797772C>T	uc003hix.2	-	11	1345	c.988G>A	c.(988-990)GAG>AAG	p.E330K	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.E330K	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	330	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			CTTCTCTTCTCCTCCATCTGC	0.517													18	64					0	0	1	0	0
PPEF2	5470	broad.mit.edu	37	4	76811167	76811167	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76811167G>A	uc003hix.2	-	5	717	c.360C>T	c.(358-360)TCC>TCT	p.S120S	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Silent_p.S120S	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	120			S -> R.		detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GGAGTGGGAAGGAGAGGCGTG	0.522													53	145					0	0	1	0	0
PPEF2	5470	broad.mit.edu	37	4	76812818	76812818	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76812818G>A	uc003hix.2	-	4	581	c.224C>T	c.(223-225)CCC>CTC	p.P75L	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.P75L	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	75					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GTGGCTGCTGGGGATGAAGTG	0.517													85	221					0	0	1	0	0
SDAD1	55153	broad.mit.edu	37	4	76879000	76879000	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76879000G>A	uc003hje.3	-	18	1697	c.1578C>T	c.(1576-1578)ATC>ATT	p.I526I	SDAD1_uc003hjf.3_Silent_p.I429I|SDAD1_uc011cbr.1_Silent_p.I489I	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	526					protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCAGACTTACGATTTCTTGCT	0.423													58	127					0	0	1	0	0
CXCL9	4283	broad.mit.edu	37	4	76924824	76924824	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76924824C>T	uc003hjh.1	-	4	344	c.305G>A	c.(304-306)GGG>GAG	p.G102E		NM_002416	NP_002407	Q07325	CXCL9_HUMAN	small inducible cytokine B9 precursor	102					cell-cell signaling|cellular defense response|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response	extracellular space	chemokine activity			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ATGTTTTTTCCCATTCTTTTG	0.353													20	93					0	0	1	0	0
CXCL10	3627	broad.mit.edu	37	4	76943088	76943088	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76943088G>A	uc003hjl.3	-	4	362	c.292C>T	c.(292-294)CCT>TCT	p.P98S	ART3_uc003hji.2_Intron|ART3_uc003hjj.2_Intron|ART3_uc003hjk.2_Intron	NM_001565	NP_001556	P02778	CXL10_HUMAN	small inducible cytokine B10 precursor	98					blood circulation|cell surface receptor linked signaling pathway|cell-cell signaling|chemotaxis|inflammatory response|muscle organ development|positive regulation of cell proliferation	extracellular space	cAMP-dependent protein kinase regulator activity|chemokine activity				0			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TGGTTTTAAGGAGATCTTTTA	0.453													50	128					0	0	1	0	0
CXCL11	6373	broad.mit.edu	37	4	76956249	76956249	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:76956249C>T	uc003hjm.2	-	3	305	c.212G>A	c.(211-213)GGA>GAA	p.G71E	ART3_uc003hji.2_Intron|ART3_uc003hjj.2_Intron|ART3_uc003hjk.2_Intron	NM_005409	NP_005400	O14625	CXL11_HUMAN	small inducible cytokine B11 precursor	71				NKGQ -> IRK (in Ref. 1; AAB17374).	cell-cell signaling|chemotaxis|inflammatory response|signal transduction	extracellular space	chemokine activity				0			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GCATCGTTGTCCTTTATTTTC	0.328													34	89					0	0	1	0	0
ART3	419	broad.mit.edu	37	4	77003470	77003470	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77003470C>T	uc003hjo.2	+	3	682	c.563C>T	c.(562-564)TCA>TTA	p.S188L	ART3_uc003hji.2_Missense_Mutation_p.S188L|ART3_uc003hjj.2_Missense_Mutation_p.S188L|ART3_uc003hjk.2_Missense_Mutation_p.S188L|ART3_uc010ija.1_Missense_Mutation_p.S188L|ART3_uc003hjn.2_Missense_Mutation_p.S188L|ART3_uc003hjp.2_Intron|ART3_uc010ijb.2_Intron|ART3_uc003hjq.2_Intron|ART3_uc003hjr.2_Missense_Mutation_p.S158L|ART3_uc010ijc.2_Missense_Mutation_p.S158L|ART3_uc010ijd.2_Missense_Mutation_p.S158L	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	188					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity	p.S188S(1)		ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TTGGCATATTCAGCCAAACCT	0.423													15	25					0	0	1	0	0
NUP54	53371	broad.mit.edu	37	4	77055431	77055431	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77055431G>A	uc003hjs.2	-	5	735	c.607C>T	c.(607-609)CGA>TGA	p.R203*	NUP54_uc010ije.2_Intron|NUP54_uc011cbs.1_Nonsense_Mutation_p.R23*|NUP54_uc011cbt.1_Nonsense_Mutation_p.R155*|NUP54_uc003hjt.2_Nonsense_Mutation_p.R23*	NM_017426	NP_059122	Q7Z3B4	NUP54_HUMAN	nucleoporin 54kDa	203	9 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleoplasm				ovary(1)|lung(1)	2						TGTTGGCTTCGAATCTCTGTT	0.388													7	60					0	0	1	0	0
STBD1	8987	broad.mit.edu	37	4	77227995	77227995	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77227995G>A	uc003hka.2	+	1	319	c.73G>A	c.(73-75)GGC>AGC	p.G25S	STBD1_uc003hjy.2_Intron|STBD1_uc011cbv.1_Intron|STBD1_uc011cbw.1_Intron	NM_003943	NP_003934	O95210	STBD1_HUMAN	starch binding domain 1	25	Cytoplasmic (Potential).				carbohydrate metabolic process|muscle contraction	integral to plasma membrane|membrane fraction	carbohydrate binding|catalytic activity|protein binding			ovary(1)	1			Lung(101;0.196)			GCTGCTGCGGGGCGGCCCTGG	0.697											OREG0016232	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	45					0	0	1	0	0
CCDC158	339965	broad.mit.edu	37	4	77283313	77283313	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77283313C>T	uc003hkb.3	-	12	2139	c.1986G>A	c.(1984-1986)GTG>GTA	p.V662V		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	662	Potential.									skin(3)|ovary(2)|pancreas(1)	6						TACTTGTTTTCACCTCATTTA	0.418													33	90					0	0	1	0	0
CCDC158	339965	broad.mit.edu	37	4	77288529	77288529	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77288529C>T	uc003hkb.3	-	11	1901	c.1748G>A	c.(1747-1749)CGA>CAA	p.R583Q		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	583	Potential.									skin(3)|ovary(2)|pancreas(1)	6						TCCAGCAGTTCGTCCATGCTG	0.458													33	76					0	0	1	0	0
CCDC158	339965	broad.mit.edu	37	4	77290690	77290690	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77290690G>A	uc003hkb.3	-	10	1389	c.1236C>T	c.(1234-1236)ATC>ATT	p.I412I		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	412	Potential.									skin(3)|ovary(2)|pancreas(1)	6						GGTCAATGGTGATGCTGTTGC	0.557													6	84					0	0	1	0	0
CCDC158	339965	broad.mit.edu	37	4	77290750	77290750	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77290750C>T	uc003hkb.3	-	10	1329	c.1176G>A	c.(1174-1176)GAG>GAA	p.E392E		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	392	Potential.									skin(3)|ovary(2)|pancreas(1)	6						CCAGACTCAGCTCCTTCTCCC	0.443													15	69					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77476765	77476765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77476765G>A	uc011cbx.1	+	2	1125	c.172G>A	c.(172-174)GAA>AAA	p.E58K		NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	58	PDZ.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CAAGCAGGTCGAAGAAGGGGG	0.602													14	44					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77631416	77631416	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77631416G>A	uc011cbx.1	+	3	1384	c.431G>A	c.(430-432)GGG>GAG	p.G144E	SHROOM3_uc011cbz.1_5'UTR	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	144					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TGGTCAGGAGGGGTTAAACTT	0.567													17	46					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660591	77660591	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77660591C>T	uc011cbx.1	+	5	2218	c.1265C>T	c.(1264-1266)TCC>TTC	p.S422F	SHROOM3_uc011cbz.1_Missense_Mutation_p.S246F|SHROOM3_uc003hkf.1_Missense_Mutation_p.S297F|SHROOM3_uc003hkg.2_Missense_Mutation_p.S200F	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	422					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TCTTTAGGCTCCCTGAAGTCT	0.552													25	56					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660736	77660736	+	Silent	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77660736A>T	uc011cbx.1	+	5	2363	c.1410A>T	c.(1408-1410)GTA>GTT	p.V470V	SHROOM3_uc011cbz.1_Silent_p.V294V|SHROOM3_uc003hkf.1_Silent_p.V345V|SHROOM3_uc003hkg.2_Silent_p.V248V	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	470					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TCTACCCGGTACCTTCCCTGG	0.577													29	76					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661269	77661269	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77661269G>A	uc011cbx.1	+	5	2896	c.1943G>A	c.(1942-1944)GGC>GAC	p.G648D	SHROOM3_uc011cbz.1_Missense_Mutation_p.G472D|SHROOM3_uc003hkf.1_Missense_Mutation_p.G523D|SHROOM3_uc003hkg.2_Missense_Mutation_p.G426D	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	648					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GAAGGCCTAGGCCAGAGCCTG	0.557													48	108					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661734	77661734	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77661734C>T	uc011cbx.1	+	5	3361	c.2408C>T	c.(2407-2409)TCT>TTT	p.S803F	SHROOM3_uc011cbz.1_Missense_Mutation_p.S627F|SHROOM3_uc003hkf.1_Missense_Mutation_p.S678F|SHROOM3_uc003hkg.2_Missense_Mutation_p.S581F	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	803					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GTGGGCGGCTCTGGTTTTGGC	0.552													21	65					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77662013	77662013	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77662013G>A	uc011cbx.1	+	5	3640	c.2687G>A	c.(2686-2688)AGC>AAC	p.S896N	SHROOM3_uc011cbz.1_Missense_Mutation_p.S720N|SHROOM3_uc003hkf.1_Missense_Mutation_p.S771N|SHROOM3_uc003hkg.2_Missense_Mutation_p.S674N	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	896					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CAGCTCTCCAGCGAGCCAGAG	0.711													10	19					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77662359	77662359	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77662359G>A	uc011cbx.1	+	5	3986	c.3033G>A	c.(3031-3033)CTG>CTA	p.L1011L	SHROOM3_uc011cbz.1_Silent_p.L835L|SHROOM3_uc003hkf.1_Silent_p.L886L|SHROOM3_uc003hkg.2_Silent_p.L789L	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1011	ASD1.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GCCGGCGCCTGACTCCCGAGC	0.726													6	16					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77662426	77662426	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77662426G>A	uc011cbx.1	+	5	4053	c.3100G>A	c.(3100-3102)GAG>AAG	p.E1034K	SHROOM3_uc011cbz.1_Missense_Mutation_p.E858K|SHROOM3_uc003hkf.1_Missense_Mutation_p.E909K|SHROOM3_uc003hkg.2_Missense_Mutation_p.E812K	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1034					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GATCGTGGAGGAGGCCGAACC	0.692													7	36					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77677753	77677753	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77677753C>T	uc011cbx.1	+	8	5814	c.4861C>T	c.(4861-4863)CAC>TAC	p.H1621Y	SHROOM3_uc003hkg.2_Missense_Mutation_p.H1399Y	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1621					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CATGAGCGTTCACGCCCAACT	0.537													34	66					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77677851	77677851	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77677851G>A	uc011cbx.1	+	8	5912	c.4959G>A	c.(4957-4959)AAG>AAA	p.K1653K	SHROOM3_uc003hkg.2_Silent_p.K1431K	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1653					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GTTTAGAAAAGAAAGTCAGTC	0.493													22	78					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77691833	77691833	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77691833G>A	uc011cbx.1	+	10	6357	c.5404G>A	c.(5404-5406)GGG>AGG	p.G1802R	SHROOM3_uc003hkg.2_Missense_Mutation_p.G1580R	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1802	ASD2.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GGAGGCGAAGGGGAGCCTGCT	0.552													26	82					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77691837	77691837	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77691837G>A	uc011cbx.1	+	10	6361	c.5408G>A	c.(5407-5409)AGC>AAC	p.S1803N	SHROOM3_uc003hkg.2_Missense_Mutation_p.S1581N	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1803	ASD2.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GCGAAGGGGAGCCTGCTCACG	0.547													26	88					0	0	1	0	0
ANKRD56	345079	broad.mit.edu	37	4	77816807	77816807	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77816807G>A	uc003hki.2	-	1	2196	c.2196C>T	c.(2194-2196)TTC>TTT	p.F732F		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	732											0						GATAGACAGGGAAAATGGGCT	0.502													105	229					0	0	1	0	0
ANKRD56	345079	broad.mit.edu	37	4	77817742	77817742	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:77817742C>T	uc003hki.2	-	1	1261	c.1261G>A	c.(1261-1263)GAG>AAG	p.E421K		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	421											0						TGCAGCCCCTCTTCAGAAGCC	0.607													9	154					0	0	1	0	0
CNOT6L	246175	broad.mit.edu	37	4	78641627	78641627	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:78641627G>A	uc011ccd.1	-	12	1757	c.1626C>T	c.(1624-1626)CTC>CTT	p.L542L	CNOT6L_uc003hks.2_Silent_p.L542L	NM_144571	NP_653172	Q96LI5	CNO6L_HUMAN	CCR4-NOT transcription complex, subunit 6-like	542					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	exonuclease activity|protein binding			large_intestine(1)	1						CAAGAGGCAGGAGTGGAGGGT	0.507													28	120					0	0	1	0	0
MRPL1	65008	broad.mit.edu	37	4	78804493	78804493	+	Missense_Mutation	SNP	G	A	A	rs116727867	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:78804493G>A	uc003hku.2	+	3	439	c.241G>A	c.(241-243)GAA>AAA	p.E81K	MRPL1_uc010iji.1_Missense_Mutation_p.E4K	NM_020236	NP_064621	Q9BYD6	RM01_HUMAN	mitochondrial ribosomal protein L1 precursor	81							RNA binding				0						TATGGAAGGCGAACCTGAGGA	0.333													27	72					0	0	1	0	0
MRPL1	65008	broad.mit.edu	37	4	78873665	78873665	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:78873665C>T	uc003hku.2	+	9	1080	c.882C>T	c.(880-882)TTC>TTT	p.F294F	MRPL1_uc010iji.1_Missense_Mutation_p.S190F	NM_020236	NP_064621	Q9BYD6	RM01_HUMAN	mitochondrial ribosomal protein L1 precursor	294							RNA binding				0						TACGTGCTTTCCTTCGTAGTT	0.323													32	77					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79240035	79240035	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79240035G>A	uc003hlb.2	+	18	2472	c.2032G>A	c.(2032-2034)GAA>AAA	p.E678K	FRAS1_uc003hkw.2_Missense_Mutation_p.E678K|FRAS1_uc003hky.1_Missense_Mutation_p.E382K|FRAS1_uc003hkz.2_Missense_Mutation_p.E382K|FRAS1_uc003hla.1_Missense_Mutation_p.E189K	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	678	FU 6.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GAAGCCAGAGGAAGGACTGCA	0.527													37	70					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79343107	79343107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79343107C>T	uc003hlb.2	+	34	5071	c.4631C>T	c.(4630-4632)CCC>CTC	p.P1544L	FRAS1_uc003hkw.2_Missense_Mutation_p.P1544L|FRAS1_uc010ijj.1_Intron	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1543	CSPG 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TACCGCCCTCCCCCGGCAGCA	0.572													61	144					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79343150	79343150	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79343150C>T	uc003hlb.2	+	34	5114	c.4674C>T	c.(4672-4674)TTC>TTT	p.F1558F	FRAS1_uc003hkw.2_Silent_p.F1558F|FRAS1_uc010ijj.1_Intron	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1557	CSPG 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CCTTCTCGTTCGCTGGTAATG	0.567													51	124					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79351478	79351478	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79351478G>A	uc003hlb.2	+	37	5316	c.4876G>A	c.(4876-4878)GCG>ACG	p.A1626T	FRAS1_uc003hkw.2_Missense_Mutation_p.A1626T|FRAS1_uc010ijj.1_Missense_Mutation_p.A46T	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1625	CSPG 5.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGCTGAGACAGCGCCCAAAGA	0.483													18	46					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79385646	79385646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79385646C>T	uc003hlb.2	+	49	7378	c.6938C>T	c.(6937-6939)CCC>CTC	p.P2313L		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2312	CSPG 11.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GATTCGCTGCCCGTCGTACAG	0.532													12	79					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79387439	79387439	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79387439C>T	uc003hlb.2	+	50	7547	c.7107C>T	c.(7105-7107)TTC>TTT	p.F2369F		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2368	CSPG 11.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GGCAGCATTTCCACCTCACCT	0.557													22	74					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79399020	79399020	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79399020G>A	uc003hlb.2	+	55	8343	c.7903G>A	c.(7903-7905)GAT>AAT	p.D2635N		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2630	Calx-beta 1.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGTCATCAACGATGATGACGT	0.483													9	17					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79418033	79418033	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79418033C>T	uc003hlb.2	+	60	9473	c.9033C>T	c.(9031-9033)GGC>GGT	p.G3011G	FRAS1_uc003hlc.1_Silent_p.G13G	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3006	Calx-beta 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCTACCTCGGCCTTCCTCTTG	0.453													37	128					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79429947	79429947	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79429947C>T	uc003hlb.2	+	63	10007	c.9567C>T	c.(9565-9567)TCC>TCT	p.S3189S	FRAS1_uc003hlc.1_Silent_p.S191S	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3184	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCAAGAAATCCCCCTCCCCAG	0.547													9	21					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79429952	79429952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79429952C>T	uc003hlb.2	+	63	10012	c.9572C>T	c.(9571-9573)TCC>TTC	p.S3191F	FRAS1_uc003hlc.1_Missense_Mutation_p.S193F	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3186	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						AAATCCCCCTCCCCAGGCTAC	0.542													4	27					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79440571	79440571	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79440571C>T	uc003hlb.2	+	67	10916	c.10476C>T	c.(10474-10476)GCC>GCT	p.A3492A		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3487	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GGGGCTGGGCCTCCTTGGAGC	0.527													68	172					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79440623	79440623	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79440623C>T	uc003hlb.2	+	67	10968	c.10528C>T	c.(10528-10530)CTC>TTC	p.L3510F		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3505	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGACACTGTTCTCTGGAGAAC	0.473													90	167					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79458278	79458278	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79458278G>A	uc003hlb.2	+	72	11662	c.11222G>A	c.(11221-11223)GGG>GAG	p.G3741E		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3736	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GATCCCACGGGGACAATCTAC	0.423													33	54					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79461839	79461839	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79461839C>T	uc003hlb.2	+	74	12040	c.11600C>T	c.(11599-11601)TCC>TTC	p.S3867F		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3862	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTTGATGATTCCCTCATCTAT	0.552													8	25					0	0	1	0	0
ANXA3	306	broad.mit.edu	37	4	79507429	79507429	+	Missense_Mutation	SNP	G	A	A	rs144530066	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:79507429G>A	uc003hld.2	+	6	638	c.328G>A	c.(328-330)GAA>AAA	p.E110K	ANXA3_uc003hle.2_Missense_Mutation_p.E71K|ANXA3_uc010ijk.2_Missense_Mutation_p.E71K	NM_005139	NP_005130	P12429	ANXA3_HUMAN	annexin A3	110	Annexin 2.				defense response to bacterium|neutrophil degranulation|phagocytosis|positive regulation of angiogenesis|positive regulation of endothelial cell migration|positive regulation of sequence-specific DNA binding transcription factor activity	phagocytic vesicle membrane|plasma membrane|specific granule	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity				0						GGGAACAAACGAAGATGCCTT	0.343													28	100					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80328076	80328076	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:80328076C>T	uc003hlu.2	-	1	1297	c.1279G>A	c.(1279-1281)GGA>AGA	p.G427R		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	427	ATP (By similarity).				glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						TTGGTCATTCCTCCATCTACC	0.418													17	127					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80328333	80328333	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:80328333G>A	uc003hlu.2	-	1	1040	c.1022C>T	c.(1021-1023)ACC>ATC	p.T341I		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	341					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GTCTCCTGAGGTCTCTATAAT	0.438													54	138					0	0	1	0	0
ANTXR2	118429	broad.mit.edu	37	4	80899252	80899252	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:80899252G>A	uc003hlz.3	-	15	2019	c.1256C>T	c.(1255-1257)CCT>CTT	p.P419L	ANTXR2_uc003hly.3_Missense_Mutation_p.P419L|ANTXR2_uc003hlx.1_RNA|ANTXR2_uc010ijn.2_Missense_Mutation_p.P316L	NM_001145794	NP_001139266	P58335	ANTR2_HUMAN	anthrax toxin receptor 2 isoform 2	419	Cytoplasmic (Potential).					endoplasmic reticulum membrane|extracellular region|integral to membrane|plasma membrane	metal ion binding|protein binding|receptor activity			ovary(1)	1						TGTTTCTTCAGGAATCTTCAC	0.483									Juvenile_Hyaline_Fibromatosis				26	60					0	0	1	0	0
PRDM8	56978	broad.mit.edu	37	4	81122553	81122553	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:81122553G>A	uc010ijo.2	+	7	1168	c.329G>A	c.(328-330)GGA>GAA	p.G110E	PRDM8_uc003hmb.3_Missense_Mutation_p.G110E|PRDM8_uc003hmc.3_Missense_Mutation_p.G110E	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	110	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATAAAAAACGGACAGCTGTTC	0.502													17	58					0	0	1	0	0
PRDM8	56978	broad.mit.edu	37	4	81123333	81123333	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:81123333C>T	uc010ijo.2	+	8	1556	c.717C>T	c.(715-717)CCC>CCT	p.P239P	PRDM8_uc003hmb.3_Silent_p.P239P|PRDM8_uc003hmc.3_Silent_p.P239P	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	239	Gly-rich.|Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ACCCATCCCCCTCCCCGGAAA	0.547											OREG0016246	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	33					0	0	1	0	0
FGF5	2250	broad.mit.edu	37	4	81207505	81207505	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:81207505C>T	uc003hmd.2	+	3	723	c.486C>T	c.(484-486)TTC>TTT	p.F162F	FGF5_uc003hme.2_3'UTR	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	162					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						ACTGCAAGTTCAGGGAGCGTT	0.393													34	183					0	0	1	0	0
PRKG2	5593	broad.mit.edu	37	4	82027083	82027083	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:82027083G>A	uc003hmh.2	-	15	1961	c.1947C>T	c.(1945-1947)CCC>CCT	p.P649P	PRKG2_uc011ccf.1_Silent_p.P229P|PRKG2_uc011ccg.1_Silent_p.P229P|PRKG2_uc011cch.1_Silent_p.P620P	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	649	Protein kinase.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						CCCCAGAAAAGGGTGGGCTAG	0.338													22	53					0	0	1	0	0
LIN54	132660	broad.mit.edu	37	4	83905984	83905984	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:83905984G>A	uc003hnx.3	-	2	392	c.14C>T	c.(13-15)CCA>CTA	p.P5L	LIN54_uc003hnz.3_Missense_Mutation_p.P5L|LIN54_uc003hny.3_5'UTR|LIN54_uc010ijt.2_Missense_Mutation_p.P5L|LIN54_uc010iju.2_5'UTR|LIN54_uc010ijv.2_Missense_Mutation_p.P5L	NM_194282	NP_919258	Q6MZP7	LIN54_HUMAN	lin-54 homolog isoform a	5					cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		Hepatocellular(203;0.114)				CACCTCAGCTGGCACCACCTC	0.383													24	126					0	0	1	0	0
HPSE	10855	broad.mit.edu	37	4	84243513	84243513	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:84243513G>A	uc003hoj.3	-	2	331	c.232C>T	c.(232-234)CCA>TCA	p.P78S	HPSE_uc010ika.2_Missense_Mutation_p.P78S|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_5'UTR|HPSE_uc011cct.1_Missense_Mutation_p.P78S|HPSE_uc003hok.3_Missense_Mutation_p.P78S	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	78					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	CGAAGCTTTGGAGAACTGTTA	0.423													12	21					0	0	1	0	0
AGPAT9	84803	broad.mit.edu	37	4	84519293	84519293	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:84519293C>T	uc003how.2	+	11	1304	c.1086C>T	c.(1084-1086)ATC>ATT	p.I362I	AGPAT9_uc003hox.2_Silent_p.I362I|AGPAT9_uc003hoy.2_Silent_p.I362I	NM_032717	NP_116106	Q53EU6	GPAT3_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 9	362					phospholipid biosynthetic process|regulation of TOR signaling cascade|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	glycerol-3-phosphate O-acyltransferase activity			skin(1)	1		Hepatocellular(203;0.114)				GCTGGGCCATCGTCTGTGACG	0.448													31	76					0	0	1	0	0
NKX6-1	4825	broad.mit.edu	37	4	85419214	85419214	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:85419214G>A	uc003hpa.1	-	1	174	c.168C>T	c.(166-168)TCC>TCT	p.S56S		NM_006168	NP_006159	P78426	NKX61_HUMAN	NK6 transcription factor related, locus 1	56	Poly-Ser.				detection of glucose|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|type B pancreatic cell maturation	nucleus					0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.0013)		gcgacgaggaggacgacgacg	0.473													4	4					0	0	1	0	0
CDS1	1040	broad.mit.edu	37	4	85525463	85525463	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:85525463C>T	uc011ccv.1	+	2	683	c.185C>T	c.(184-186)CCA>CTA	p.P62L		NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	62					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		CCGGAAATTCCACCATCCTCA	0.343													38	76					0	0	1	0	0
CDS1	1040	broad.mit.edu	37	4	85530629	85530629	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:85530629C>T	uc011ccv.1	+	3	791	c.293C>T	c.(292-294)TCG>TTG	p.S98L		NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	98	Helical; (Potential).				signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		ACTATGATCTCGTTGTTTTTC	0.348													49	103					0	0	1	0	0
CDS1	1040	broad.mit.edu	37	4	85540643	85540643	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:85540643C>T	uc011ccv.1	+	5	1035	c.537C>T	c.(535-537)CTC>CTT	p.L179L		NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	179					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		TTCAGTTCCTCATTCGCTACC	0.313													18	86					0	0	1	0	0
CDS1	1040	broad.mit.edu	37	4	85566375	85566375	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:85566375G>A	uc011ccv.1	+	12	1651	c.1153G>A	c.(1153-1155)GAT>AAT	p.D385N	CDS1_uc010ike.1_Missense_Mutation_p.D149N	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	385					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		GTTTCTAAAGGATTTTGCAAA	0.338													23	63					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85696067	85696067	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:85696067G>A	uc003hpd.2	-	29	5068	c.4660C>T	c.(4660-4662)CGA>TGA	p.R1554*		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1554						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GACATATCTCGAAGAGTCAGG	0.398													47	99					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85710914	85710914	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:85710914G>A	uc003hpd.2	-	22	4042	c.3634C>T	c.(3634-3636)CTT>TTT	p.L1212F		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1212						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TCAATATAAAGGGCTGCAGTA	0.403													32	91					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85711043	85711043	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:85711043C>T	uc003hpd.2	-	22	3913	c.3505G>A	c.(3505-3507)GAG>AAG	p.E1169K		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1169						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AATGAGGACTCTTCACTAAAA	0.388													18	53					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85715876	85715876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:85715876G>A	uc003hpd.2	-	21	3691	c.3283C>T	c.(3283-3285)CCT>TCT	p.P1095S		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1095						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GAGGGAGGAGGGAAGAATCTT	0.343													16	41					0	0	1	0	0
MAPK10	5602	broad.mit.edu	37	4	87080462	87080462	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:87080462C>T	uc003hpq.2	-	3	292	c.225G>A	c.(223-225)CAG>CAA	p.Q75Q	MAPK10_uc010ikg.2_Silent_p.Q37Q|MAPK10_uc003hpr.2_Silent_p.Q37Q|MAPK10_uc003hps.2_Silent_p.Q75Q|MAPK10_uc003hpt.2_Silent_p.Q75Q|MAPK10_uc003hpu.2_Silent_p.Q75Q|MAPK10_uc003hpv.2_5'UTR|MAPK10_uc010ikh.1_RNA|uc003hpw.2_Intron	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	75	ATP.|Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		AAACTATGCCCTGAGCCCCAG	0.448													36	119					0	0	1	0	0
PTPN13	5783	broad.mit.edu	37	4	87724972	87724972	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:87724972G>A	uc003hpz.2	+	43	7096	c.6616G>A	c.(6616-6618)GGT>AGT	p.G2206S	PTPN13_uc003hpy.2_Missense_Mutation_p.G2211S|PTPN13_uc003hqa.2_Missense_Mutation_p.G2187S|PTPN13_uc003hqb.2_Missense_Mutation_p.G2015S|PTPN13_uc003hqc.1_Missense_Mutation_p.G572S	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	2206				GLLDQ -> VARS (in Ref. 5; CAA56124).		cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		AGTCCTGCGGGGTTTGCTAGA	0.458													12	158					0	0	1	0	0
PTPN13	5783	broad.mit.edu	37	4	87730951	87730951	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:87730951G>A	uc003hpz.2	+	46	7593	c.7113G>A	c.(7111-7113)CTG>CTA	p.L2371L	PTPN13_uc003hpy.2_Silent_p.L2376L|PTPN13_uc003hqa.2_Silent_p.L2352L|PTPN13_uc003hqb.2_Silent_p.L2180L	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	2371	Tyrosine-protein phosphatase.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		TTTCTCATCTGAATTTCACTG	0.383													38	84					0	0	1	0	0
PTPN13	5783	broad.mit.edu	37	4	87735635	87735635	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:87735635C>T	uc003hpz.2	+	48	7869	c.7389C>T	c.(7387-7389)GTC>GTT	p.V2463V	PTPN13_uc003hpy.2_Silent_p.V2468V|PTPN13_uc003hqa.2_Silent_p.V2444V|PTPN13_uc003hqb.2_Silent_p.V2272V	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	2463	Tyrosine-protein phosphatase.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GCTATCAAGTCATCCTTTATG	0.348													6	54					0	0	1	0	0
SLC10A6	345274	broad.mit.edu	37	4	87744939	87744939	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:87744939C>T	uc003hqd.2	-	6	1184	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	346	Cytoplasmic (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		TCATTCACCTCCAAGAAGGCA	0.498													33	74					0	0	1	0	0
KLHL8	57563	broad.mit.edu	37	4	88106515	88106515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88106515G>A	uc011cdb.1	-	3	1038	c.653C>T	c.(652-654)TCC>TTC	p.S218F	KLHL8_uc003hql.1_Missense_Mutation_p.S218F|KLHL8_uc003hqm.1_Missense_Mutation_p.S142F|KLHL8_uc003hqn.1_Intron|KLHL8_uc010ikj.1_Intron	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	218											0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		ATCACTGGAGGACAAAAGCTT	0.428													15	139					0	0	1	0	0
HSD17B13	345275	broad.mit.edu	37	4	88235022	88235022	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88235022G>A	uc003hqo.2	-	5	711	c.648C>T	c.(646-648)CTC>CTT	p.L216L	HSD17B13_uc010ikk.2_Silent_p.L180L	NM_178135	NP_835236	Q7Z5P4	DHB13_HUMAN	hydroxysteroid (17-beta) dehydrogenase 13	216						extracellular region	binding|oxidoreductase activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.000308)		AAACTGGGCAGAGACATGAGG	0.408													26	48					0	0	1	0	0
HSD17B13	345275	broad.mit.edu	37	4	88243952	88243952	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88243952G>A	uc003hqo.2	-	1	105	c.42C>T	c.(40-42)ATC>ATT	p.I14I	HSD17B13_uc010ikk.2_Silent_p.I14I	NM_178135	NP_835236	Q7Z5P4	DHB13_HUMAN	hydroxysteroid (17-beta) dehydrogenase 13	14						extracellular region	binding|oxidoreductase activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.000308)		AGGAGTAGATGATGGTGATCA	0.468													19	47					0	0	1	0	0
SPARCL1	8404	broad.mit.edu	37	4	88415108	88415108	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88415108A>T	uc010ikm.2	-	5	1416	c.844T>A	c.(844-846)TCG>ACG	p.S282T	SPARCL1_uc011cdc.1_Missense_Mutation_p.S157T|SPARCL1_uc003hqs.3_Missense_Mutation_p.S282T|SPARCL1_uc011cdd.1_Missense_Mutation_p.S157T|SPARCL1_uc003hqt.2_Missense_Mutation_p.S282T	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	282					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		TTGACGTTCGATGCATTTTCC	0.413													125	316					0	0	1	0	0
SPARCL1	8404	broad.mit.edu	37	4	88415537	88415537	+	Missense_Mutation	SNP	C	T	T	rs140130359		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88415537C>T	uc010ikm.2	-	5	987	c.415G>A	c.(415-417)GAT>AAT	p.D139N	SPARCL1_uc011cdc.1_Missense_Mutation_p.D14N|SPARCL1_uc003hqs.3_Missense_Mutation_p.D139N|SPARCL1_uc011cdd.1_Missense_Mutation_p.D14N|SPARCL1_uc003hqt.2_Missense_Mutation_p.D139N	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	139					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		GCCAAAAAATCAGTGTTCTCT	0.378													51	119					0	0	1	0	0
DSPP	1834	broad.mit.edu	37	4	88534406	88534406	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88534406A>T	uc003hqu.2	+	4	1188	c.1068A>T	c.(1066-1068)GAA>GAT	p.E356D		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	356					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		AACGCGTAGAAAATAGAATCA	0.413													19	44					0	0	1	0	0
DMP1	1758	broad.mit.edu	37	4	88583472	88583472	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88583472G>A	uc003hqv.2	+	6	646	c.542G>A	c.(541-543)GGT>GAT	p.G181D	DMP1_uc003hqw.2_Missense_Mutation_p.G165D	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	181					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		CCTGAGGGAGGTGACTCCACT	0.587													13	34					0	0	1	0	0
DMP1	1758	broad.mit.edu	37	4	88583862	88583862	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88583862G>A	uc003hqv.2	+	6	1036	c.932G>A	c.(931-933)AGA>AAA	p.R311K	DMP1_uc003hqw.2_Missense_Mutation_p.R295K	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	311					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		CAACCCAGGAGAGACAGCAAG	0.517													8	76					0	0	1	0	0
DMP1	1758	broad.mit.edu	37	4	88583873	88583873	+	Missense_Mutation	SNP	G	A	A	rs149603030		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88583873G>A	uc003hqv.2	+	6	1047	c.943G>A	c.(943-945)GGT>AGT	p.G315S	DMP1_uc003hqw.2_Missense_Mutation_p.G299S	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	315					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		AGACAGCAAGGGTGACTCTCA	0.512													6	80					0	0	1	0	0
DMP1	1758	broad.mit.edu	37	4	88583945	88583945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88583945G>A	uc003hqv.2	+	6	1119	c.1015G>A	c.(1015-1017)GAG>AAG	p.E339K	DMP1_uc003hqw.2_Missense_Mutation_p.E323K	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	339					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		TCCCAGCAGTGAGTCCAGCCA	0.552													13	95					0	0	1	0	0
DMP1	1758	broad.mit.edu	37	4	88584064	88584064	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88584064G>A	uc003hqv.2	+	6	1238	c.1134G>A	c.(1132-1134)CAG>CAA	p.Q378Q	DMP1_uc003hqw.2_Silent_p.Q362Q	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	378					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		TAGAAGACCAGGAAGACAGTG	0.532													50	167					0	0	1	0	0
DMP1	1758	broad.mit.edu	37	4	88584281	88584281	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88584281G>A	uc003hqv.2	+	6	1455	c.1351G>A	c.(1351-1353)GAA>AAA	p.E451K	DMP1_uc003hqw.2_Missense_Mutation_p.E435K	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	451					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		CCATTCTGAGGAAGACGACAG	0.532													7	59					0	0	1	0	0
DMP1	1758	broad.mit.edu	37	4	88584297	88584297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88584297C>T	uc003hqv.2	+	6	1471	c.1367C>T	c.(1366-1368)TCT>TTT	p.S456F	DMP1_uc003hqw.2_Missense_Mutation_p.S440F	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	456					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		GACAGTGACTCTCAAGACAGC	0.522													16	59					0	0	1	0	0
IBSP	3381	broad.mit.edu	37	4	88732726	88732726	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88732726C>T	uc003hqx.3	+	7	716	c.618C>T	c.(616-618)GTC>GTT	p.V206V		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	206					biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		AAGAAAGTGTCACTGGAGCCA	0.537													14	52					0	0	1	0	0
MEPE	56955	broad.mit.edu	37	4	88767368	88767368	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88767368G>A	uc003hqy.2	+	4	1387	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K	MEPE_uc010ikn.2_Missense_Mutation_p.E337K	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	450					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		AATCAAAAACGAAATGGATTC	0.378													13	64					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	88813139	88813139	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88813139G>A	uc010iko.1	+	1	145	c.145G>A	c.(145-147)GAT>AAT	p.D49N						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		TAATGCTTCTGATGCCTTGGA	0.453													37	82					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	88813623	88813623	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88813623C>T	uc010iko.1	+	2	567	c.567C>T	c.(565-567)GGC>GGT	p.G189G						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		AGTTCATAGGCTATCCCATCA	0.313													31	82					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	88814571	88814571	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88814571G>A	uc010iko.1	+	4	1198	c.1198G>A	c.(1198-1200)GAG>AAG	p.E400K						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		GCAGCTCAAGGAGTTTGATGG	0.507													4	31					0	0	1	0	0
SPP1	6696	broad.mit.edu	37	4	88903860	88903860	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:88903860G>A	uc003hra.2	+	7	922	c.757G>A	c.(757-759)GAG>AAG	p.E253K	SPP1_uc003hrb.2_Missense_Mutation_p.E226K|SPP1_uc003hrc.2_Missense_Mutation_p.E239K|SPP1_uc011cde.1_Missense_Mutation_p.E266K|SPP1_uc003hrd.2_Missense_Mutation_p.E212K	NM_001040058	NP_001035147	P10451	OSTP_HUMAN	secreted phosphoprotein 1 isoform a	253					biomineral tissue development|cell adhesion|decidualization|embryo implantation|ossification|response to vitamin D	extracellular space	cytokine activity			ovary(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-05)		AGCCAATGATGAGAGCAATGA	0.468													31	102					0	0	1	0	0
ABCG2	9429	broad.mit.edu	37	4	89052351	89052351	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:89052351C>T	uc003hrg.2	-	5	886	c.393G>A	c.(391-393)ATG>ATA	p.M131I	ABCG2_uc003hrh.2_Missense_Mutation_p.M131I|ABCG2_uc003hrf.2_Missense_Mutation_p.M1I	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	131	ABC transporter.|Cytoplasmic (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	TCAGAGTGCCCATCACAACAT	0.378													23	111					0	0	1	0	0
PPM1K	152926	broad.mit.edu	37	4	89199393	89199393	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:89199393G>A	uc003hrm.3	-	2	733	c.343C>T	c.(343-345)CAG>TAG	p.Q115*	PPM1K_uc010ikp.1_Nonsense_Mutation_p.Q115*|PPM1K_uc003hrn.2_Nonsense_Mutation_p.Q115*	NM_152542	NP_689755	Q8N3J5	PPM1K_HUMAN	protein phosphatase 1K (PP2C domain containing)	115	PP2C-like.				protein dephosphorylation	mitochondrial matrix|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000192)		TCTGTCAGCTGAGCGAAGTCA	0.463													17	19					0	0	1	0	0
HERC6	55008	broad.mit.edu	37	4	89304376	89304376	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:89304376C>T	uc011cdi.1	+	2	386	c.203C>T	c.(202-204)CCA>CTA	p.P68L	HERC6_uc003hrp.1_RNA|HERC6_uc011cdj.1_Missense_Mutation_p.P68L|HERC6_uc011cdk.1_RNA|HERC6_uc011cdl.1_RNA	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	68	RCC1 1.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		CCCAAAGAACCAATTCAGGCA	0.453													3	13					0	0	1	0	0
HERC3	8916	broad.mit.edu	37	4	89574082	89574082	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:89574082C>T	uc003hrw.1	+	6	692	c.526C>T	c.(526-528)CCC>TCC	p.P176S	HERC3_uc003hrv.2_Missense_Mutation_p.P176S|HERC3_uc011cdn.1_Missense_Mutation_p.P58S	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	176	RCC1 4.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		GAAGGAGTTCCCCTCCCAAGC	0.562													15	36					0	0	1	0	0
NAP1L5	266812	broad.mit.edu	37	4	89618461	89618461	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:89618461C>T	uc003hrx.2	-	1	563	c.445G>A	c.(445-447)GAG>AAG	p.E149K	HERC3_uc003hrw.1_Intron|HERC3_uc011cdn.1_Intron|HERC3_uc011cdo.1_Intron	NM_153757	NP_715638	Q96NT1	NP1L5_HUMAN	nucleosome assembly protein 1-like 5	149	Glu-rich.				nucleosome assembly	nucleus	protein binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000181)		tccccctcctcctcgtcatcc	0.398													34	77					0	0	1	0	0
FAM13A	10144	broad.mit.edu	37	4	89653337	89653337	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:89653337C>T	uc003hse.1	-	22	2867	c.2659G>A	c.(2659-2661)GGG>AGG	p.G887R	FAM13A_uc011cdp.1_5'UTR|FAM13A_uc003hsa.1_Missense_Mutation_p.G330R|FAM13A_uc003hsb.1_Missense_Mutation_p.G561R|FAM13A_uc003hsd.1_Missense_Mutation_p.G533R|FAM13A_uc003hsc.1_Missense_Mutation_p.G547R|FAM13A_uc011cdq.1_Missense_Mutation_p.G533R|FAM13A_uc003hsf.1_Missense_Mutation_p.G473R|FAM13A_uc003hsg.1_Missense_Mutation_p.G330R	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	887					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TCTTCTGACCCCTCCTCTTCT	0.413													30	60					0	0	1	0	0
FAM13A	10144	broad.mit.edu	37	4	89671018	89671018	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:89671018C>T	uc003hse.1	-	16	2191	c.1983G>A	c.(1981-1983)GAG>GAA	p.E661E	FAM13A_uc003hsa.1_Silent_p.E132E|FAM13A_uc003hsb.1_Silent_p.E335E|FAM13A_uc003hsd.1_Silent_p.E335E|FAM13A_uc003hsc.1_Silent_p.E321E|FAM13A_uc011cdq.1_Silent_p.E307E|FAM13A_uc003hsf.1_Silent_p.E247E|FAM13A_uc003hsg.1_Silent_p.E132E|FAM13A_uc010ikr.1_Silent_p.E157E	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	661					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						GTGTCAGGTCCTCTTGCTCAT	0.502													23	55					0	0	1	0	0
FAM13A	10144	broad.mit.edu	37	4	89671687	89671687	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:89671687C>T	uc003hse.1	-	15	2036	c.1828G>A	c.(1828-1830)GAA>AAA	p.E610K	FAM13A_uc003hsa.1_Missense_Mutation_p.E81K|FAM13A_uc003hsb.1_Missense_Mutation_p.E284K|FAM13A_uc003hsd.1_Missense_Mutation_p.E284K|FAM13A_uc003hsc.1_Missense_Mutation_p.E270K|FAM13A_uc011cdq.1_Missense_Mutation_p.E256K|FAM13A_uc003hsf.1_Missense_Mutation_p.E196K|FAM13A_uc003hsg.1_Missense_Mutation_p.E81K|FAM13A_uc010ikr.1_Missense_Mutation_p.E106K	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	610					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TCGCTGTCTTCGTCCAGCAGC	0.602													30	97					0	0	1	0	0
FAM13A	10144	broad.mit.edu	37	4	89827573	89827573	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:89827573C>T	uc003hse.1	-	6	1008	c.800G>A	c.(799-801)AGA>AAA	p.R267K	FAM13A_uc003hsf.1_Missense_Mutation_p.R58K|FAM13A_uc003hsh.1_Missense_Mutation_p.R81K	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	267					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TTCTAAGCCTCTTGTTAAAAG	0.363													167	417					0	0	1	0	0
TIGD2	166815	broad.mit.edu	37	4	90035004	90035004	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:90035004C>T	uc003hsk.2	+	1	1037	c.879C>T	c.(877-879)TTC>TTT	p.F293F	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	293	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		TTTTAGATTTCCCCCCAGCAC	0.303													35	83					0	0	1	0	0
GPRIN3	285513	broad.mit.edu	37	4	90169293	90169293	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:90169293C>T	uc003hsm.1	-	2	2488	c.1969G>A	c.(1969-1971)GGA>AGA	p.G657R		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	657										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		GGAGTGAGTCCTACCTGAGCA	0.577													17	62					0	0	1	0	0
GPRIN3	285513	broad.mit.edu	37	4	90169374	90169374	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:90169374C>T	uc003hsm.1	-	2	2407	c.1888G>A	c.(1888-1890)GCC>ACC	p.A630T		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	630										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		CGTGGGCTGGCTTTGACGGAG	0.582													40	83					0	0	1	0	0
GPRIN3	285513	broad.mit.edu	37	4	90170278	90170278	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:90170278G>A	uc003hsm.1	-	2	1503	c.984C>T	c.(982-984)GTC>GTT	p.V328V		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	328										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		ATCTGCTCTCGACACTCGCCA	0.527													42	93					0	0	1	0	0
GPRIN3	285513	broad.mit.edu	37	4	90170573	90170573	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:90170573G>A	uc003hsm.1	-	2	1208	c.689C>T	c.(688-690)TCT>TTT	p.S230F		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	230										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		CCTCATTTCAGAGTCACAGAT	0.547													22	52					0	0	1	0	0
MMRN1	22915	broad.mit.edu	37	4	90816375	90816375	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:90816375C>T	uc003hst.2	+	1	324	c.253C>T	c.(253-255)CCC>TCC	p.P85S	MMRN1_uc010iku.2_Intron	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	85					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		AACACTGCCTCCCTCAGAAAC	0.478													20	47					0	0	1	0	0
MMRN1	22915	broad.mit.edu	37	4	90857667	90857667	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:90857667C>T	uc003hst.2	+	6	2907	c.2836C>T	c.(2836-2838)CCT>TCT	p.P946S	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.P688S	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	946					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		TGCTACCATCCCTAAGTGGAT	0.363													21	60					0	0	1	0	0
MMRN1	22915	broad.mit.edu	37	4	90872781	90872781	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:90872781T>A	uc003hst.2	+	7	3215	c.3144T>A	c.(3142-3144)CAT>CAA	p.H1048Q	MMRN1_uc010iku.2_Missense_Mutation_p.H351Q|MMRN1_uc011cds.1_Missense_Mutation_p.H790Q	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	1048	EGF-like.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GTAGTCGGCATCCGTGCCAAA	0.413													20	56					0	0	1	0	0
FAM190A	401145	broad.mit.edu	37	4	91389464	91389464	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:91389464G>A	uc003hsv.3	+	5	2023	c.1683G>A	c.(1681-1683)ATG>ATA	p.M561I	FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.M561I	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	561										large_intestine(1)|ovary(1)	2						TGATAGAAATGAAGAAAAGAG	0.383													12	33					0	0	1	0	0
FAM190A	401145	broad.mit.edu	37	4	91549184	91549184	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:91549184C>T	uc003hsv.3	+	6	2073	c.1733C>T	c.(1732-1734)TCC>TTC	p.S578F	FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.S578F	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	578										large_intestine(1)|ovary(1)	2						AGGAATCTTTCCCTGAAATTA	0.408													18	48					0	0	1	0	0
TMSL3	7117	broad.mit.edu	37	4	91760156	91760156	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:91760156C>T	uc003hsy.2	-	1	114	c.33G>A	c.(31-33)GAG>GAA	p.E11E	FAM190A_uc003hsv.3_Intron|FAM190A_uc010ikv.2_Intron|FAM190A_uc003hsx.2_Intron	NM_183049	NP_898870			thymosin-like 3												0		all_cancers(2;6.48e-24)|all_epithelial(2;3.86e-25)|Colorectal(2;8.52e-12)|all_lung(2;3.73e-07)|Lung NSC(2;7.99e-07)|Renal(2;0.0243)|Hepatocellular(203;0.0411)		Epithelial(2;5.28e-11)|OV - Ovarian serous cystadenocarcinoma(123;8.9e-10)|all cancers(2;3.21e-09)|STAD - Stomach adenocarcinoma(1;0.0201)		TATCGAATTTCTCGATCTCAG	0.522													72	219					0	0	1	0	0
TMSL3	7117	broad.mit.edu	37	4	91760158	91760158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:91760158C>T	uc003hsy.2	-	1	112	c.31G>A	c.(31-33)GAG>AAG	p.E11K	FAM190A_uc003hsv.3_Intron|FAM190A_uc010ikv.2_Intron|FAM190A_uc003hsx.2_Intron	NM_183049	NP_898870			thymosin-like 3												0		all_cancers(2;6.48e-24)|all_epithelial(2;3.86e-25)|Colorectal(2;8.52e-12)|all_lung(2;3.73e-07)|Lung NSC(2;7.99e-07)|Renal(2;0.0243)|Hepatocellular(203;0.0411)		Epithelial(2;5.28e-11)|OV - Ovarian serous cystadenocarcinoma(123;8.9e-10)|all cancers(2;3.21e-09)|STAD - Stomach adenocarcinoma(1;0.0201)		TCGAATTTCTCGATCTCAGCC	0.527													73	221					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	93225885	93225885	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:93225885C>T	uc011cdt.1	+	1	336	c.78C>T	c.(76-78)ATC>ATT	p.I26I	GRID2_uc010ikx.2_Silent_p.I26I|GRID2_uc011cdu.1_Silent_p.I26I	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	26	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CGGATTCGATCATTCACATCG	0.502													19	51					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94032040	94032040	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:94032040G>A	uc011cdt.1	+	4	929	c.671G>A	c.(670-672)CGA>CAA	p.R224Q	GRID2_uc010ikx.2_Missense_Mutation_p.R224Q|GRID2_uc011cdu.1_Missense_Mutation_p.R129Q|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	224	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AATCGCTATCGAGACACTCTT	0.408													35	93					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94032059	94032059	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:94032059G>A	uc011cdt.1	+	4	948	c.690G>A	c.(688-690)GCG>GCA	p.A230A	GRID2_uc010ikx.2_Silent_p.A230A|GRID2_uc011cdu.1_Silent_p.A135A|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	230	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TTAGGCGAGCGATCCTTGTTA	0.383													24	100					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94137937	94137937	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:94137937A>G	uc011cdt.1	+	6	1096	c.838A>G	c.(838-840)AGG>GGG	p.R280G	GRID2_uc010ikx.2_Missense_Mutation_p.R280G|GRID2_uc011cdu.1_Missense_Mutation_p.R185G|GRID2_uc010ikz.1_5'UTR	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	280	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GTCAATTGGAAGGTTAACGAT	0.393													41	169					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94145923	94145923	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:94145923G>A	uc011cdt.1	+	7	1380	c.1122G>A	c.(1120-1122)AAG>AAA	p.K374K	GRID2_uc011cdu.1_Silent_p.K279K|GRID2_uc010ikz.1_Silent_p.K55K	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	374	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AGACCATCAAGAAGGTAACTT	0.383													16	41					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94316839	94316839	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:94316839C>T	uc011cdt.1	+	9	1585	c.1327C>T	c.(1327-1329)CTA>TTA	p.L443L	GRID2_uc011cdu.1_Silent_p.L348L	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	443	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TGGAGTGGTTCTACGTGTAGT	0.393													33	84					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94376979	94376979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:94376979C>T	uc011cdt.1	+	11	1970	c.1712C>T	c.(1711-1713)GCT>GTT	p.A571V	GRID2_uc011cdu.1_Missense_Mutation_p.A476V	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	571	Helical; (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TCTCTATGGGCTTGCATTGCT	0.478													48	104					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94377063	94377063	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:94377063C>T	uc011cdt.1	+	11	2054	c.1796C>T	c.(1795-1797)TCA>TTA	p.S599L	GRID2_uc011cdu.1_Missense_Mutation_p.S504L	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	599	Cytoplasmic (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CAAATGGGATCAATGACGTCT	0.418													24	117					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94693284	94693284	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:94693284G>A	uc011cdt.1	+	16	2917	c.2659G>A	c.(2659-2661)GAT>AAT	p.D887N	GRID2_uc011cdu.1_Missense_Mutation_p.D792N	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	887	Cytoplasmic (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CTTGTGCACAGATGACGACAG	0.448													62	126					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94693326	94693326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:94693326G>A	uc011cdt.1	+	16	2959	c.2701G>A	c.(2701-2703)GAT>AAT	p.D901N	GRID2_uc011cdu.1_Missense_Mutation_p.D806N	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	901	Cytoplasmic (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CTCGTCAATTGATTTGACCCC	0.458													11	181					0	0	1	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95147382	95147382	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:95147382C>T	uc003htc.3	+	3	558	c.303C>T	c.(301-303)GTC>GTT	p.V101V	SMARCAD1_uc003htb.3_Silent_p.V101V|SMARCAD1_uc003htd.3_Silent_p.V101V|SMARCAD1_uc010ila.2_5'UTR	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	101					chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		GTGAAGATGTCGTTTCCCCAA	0.303													55	111					0	0	1	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95174054	95174054	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:95174054C>T	uc003htc.3	+	9	1432	c.1177C>T	c.(1177-1179)CTT>TTT	p.L393F	SMARCAD1_uc003htb.3_Missense_Mutation_p.L393F|SMARCAD1_uc003htd.3_Missense_Mutation_p.L393F|SMARCAD1_uc010ila.2_Missense_Mutation_p.L256F|SMARCAD1_uc011cdw.1_5'Flank	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	393					chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		TCTTCACTTCCTTCAAGATGC	0.408													16	114					0	0	1	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95194801	95194801	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:95194801C>T	uc003htc.3	+	12	1861	c.1606C>T	c.(1606-1608)CTG>TTG	p.L536L	SMARCAD1_uc003htb.3_Silent_p.L536L|SMARCAD1_uc003htd.3_Silent_p.L536L|SMARCAD1_uc010ila.2_Silent_p.L399L|SMARCAD1_uc011cdw.1_Silent_p.L106L	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	536	Helicase ATP-binding.				chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		CATTGCATTTCTGGCATACCT	0.308													19	38					0	0	1	0	0
HPGDS	27306	broad.mit.edu	37	4	95220653	95220653	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:95220653C>T	uc003hte.1	-	6	669	c.578G>A	c.(577-579)CGA>CAA	p.R193Q		NM_014485	NP_055300	O60760	HPGDS_HUMAN	prostaglandin D2 synthase, hematopoietic	193	GST C-terminal.				locomotory behavior|prostaglandin biosynthetic process|signal transduction	cytoplasm|nucleus	calcium ion binding|glutathione transferase activity|magnesium ion binding|prostaglandin-D synthase activity|protein homodimerization activity			ovary(1)	1					Glutathione(DB00143)	TTGGGGCCTTCGTTTTATCCA	0.478													35	57					0	0	1	0	0
PDLIM5	10611	broad.mit.edu	37	4	95496819	95496819	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:95496819C>T	uc003hti.2	+	5	495	c.344C>T	c.(343-345)TCC>TTC	p.S115F	PDLIM5_uc003htf.2_Intron|PDLIM5_uc003htg.2_Intron|PDLIM5_uc011cdx.1_Intron|PDLIM5_uc003hth.2_Intron|PDLIM5_uc003htj.2_Intron|PDLIM5_uc003htk.2_Intron|PDLIM5_uc011cdy.1_5'UTR	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	115					regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		CCTGCTGTGTCCAAAGTCACT	0.428													52	139					0	0	1	0	0
UNC5C	8633	broad.mit.edu	37	4	96104083	96104083	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:96104083C>T	uc003htp.1	-	14	2570	c.2416G>A	c.(2416-2418)GGG>AGG	p.G806R		NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	806	Cytoplasmic (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		AAGATCTGCCCTTCTCCTTCC	0.522													31	79					0	0	1	0	0
UNC5C	8633	broad.mit.edu	37	4	96123893	96123893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:96123893C>T	uc003htp.1	-	12	2279	c.2125G>A	c.(2125-2127)GAT>AAT	p.D709N	UNC5C_uc010ilc.1_Missense_Mutation_p.D728N	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	709	Cytoplasmic (Potential).|Interaction with DCC (By similarity).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TTCAGGGCATCCTGGGTGTCA	0.597													10	12					0	0	1	0	0
UNC5C	8633	broad.mit.edu	37	4	96163655	96163655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:96163655G>A	uc003htp.1	-	7	1187	c.1033C>T	c.(1033-1035)CCC>TCC	p.P345S	UNC5C_uc010ilc.1_Missense_Mutation_p.P345S|UNC5C_uc003htq.2_Missense_Mutation_p.P345S	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	345	Extracellular (Potential).|TSP type-1 2.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		CCATTCTTGGGGGCTGGCGCC	0.567													12	25					0	0	1	0	0
UNC5C	8633	broad.mit.edu	37	4	96163702	96163702	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:96163702C>T	uc003htp.1	-	7	1140	c.986G>A	c.(985-987)GGA>GAA	p.G329E	UNC5C_uc010ilc.1_Missense_Mutation_p.G329E|UNC5C_uc003htq.2_Missense_Mutation_p.G329E	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	329	Extracellular (Potential).|TSP type-1 2.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		GCACTCAGTTCCACAAGTAGA	0.597													7	17					0	0	1	0	0
PDHA2	5161	broad.mit.edu	37	4	96761857	96761857	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:96761857G>A	uc003htr.3	+	1	619	c.556G>A	c.(556-558)GAG>AAG	p.E186K		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	186					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	AGGAAACGATGAGATCTGTTT	0.478													33	82					0	0	1	0	0
RAP1GDS1	5910	broad.mit.edu	37	4	99338587	99338587	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:99338587C>T	uc003htx.3	+	9	1167	c.977C>T	c.(976-978)CCA>CTA	p.P326L	RAP1GDS1_uc003htw.3_Missense_Mutation_p.P327L|RAP1GDS1_uc003htv.3_Missense_Mutation_p.P327L|RAP1GDS1_uc003htz.3_Missense_Mutation_p.P277L|RAP1GDS1_uc003hty.3_Missense_Mutation_p.P278L|RAP1GDS1_uc003hua.3_Missense_Mutation_p.P235L	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	326							binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		TCTTGGATCCCATCAAATAAC	0.388			T	NUP98	T-ALL								20	51					0	0	1	0	0
ADH6	130	broad.mit.edu	37	4	100126096	100126096	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100126096C>T	uc003hup.3	-	8	1183	c.1089G>A	c.(1087-1089)ATG>ATA	p.M363I	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.M363I|ADH6_uc011cef.1_Missense_Mutation_p.M154I|ADH6_uc010ile.2_3'UTR	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	363					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	TTCCAGTTTTCATTAATTCAA	0.373													31	56					0	0	1	0	0
ADH6	130	broad.mit.edu	37	4	100130033	100130033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100130033G>A	uc003hup.3	-	6	714	c.620C>T	c.(619-621)TCT>TTT	p.S207F	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.S207F|ADH6_uc011cef.1_5'UTR|ADH6_uc010ile.2_Missense_Mutation_p.S207F	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	207					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	CATGACAACAGACAAGCCGAC	0.473													39	274					0	0	1	0	0
ADH6	130	broad.mit.edu	37	4	100131594	100131594	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100131594C>T	uc003hup.3	-	4	422	c.328G>A	c.(328-330)GGC>AGC	p.G110S	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.G110S|ADH6_uc011cef.1_5'UTR|ADH6_uc010ile.2_Missense_Mutation_p.G110S	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	110					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	CAAAAATTGCCCTCAGAATTC	0.303													32	91					0	0	1	0	0
ADH6	130	broad.mit.edu	37	4	100134904	100134904	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100134904C>T	uc003hup.3	-	3	215	c.121G>A	c.(121-123)GTT>ATT	p.V41I	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.V41I|ADH6_uc011cef.1_Intron|ADH6_uc010ile.2_Missense_Mutation_p.V41I	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	41					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	GTGGCCACAACCTGTATGGAA	0.468													25	48					0	0	1	0	0
ADH1A	124	broad.mit.edu	37	4	100205629	100205629	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100205629G>A	uc003hur.1	-	5	565	c.494C>T	c.(493-495)TCG>TTG	p.S165L	uc003hum.1_Intron|ADH1A_uc011ceg.1_Missense_Mutation_p.S165L|ADH1A_uc010ilf.1_5'UTR	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	165					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	CTCTAGAGGCGAGGCTGCATC	0.478													25	74					0	0	1	0	0
ADH1C	126	broad.mit.edu	37	4	100261751	100261751	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100261751C>T	uc003huu.2	-	9	1030	c.945G>A	c.(943-945)TGG>TGA	p.W315*		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	315					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	TAGCTCCTTTCCACGTGCGTC	0.438									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				69	203					0	0	1	0	0
ADH1C	126	broad.mit.edu	37	4	100266060	100266060	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100266060C>T	uc003huu.2	-	7	611	c.526G>A	c.(526-528)GGA>AGA	p.G176R		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	176					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	GTCGAAAATCCACAGCCAATG	0.507									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				43	117					0	0	1	0	0
ADH1C	126	broad.mit.edu	37	4	100268916	100268916	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100268916C>T	uc003huu.2	-	2	191	c.106G>A	c.(106-108)GAA>AAA	p.E36K		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	36					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	ATGCGAACTTCATGAGCCTTA	0.338									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				22	57					0	0	1	0	0
ADH7	131	broad.mit.edu	37	4	100348964	100348964	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100348964G>A	uc003huv.1	-	5	665	c.566C>T	c.(565-567)TCC>TTC	p.S189F		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	189					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	ATATCCAGTGGAAAACCCACA	0.408													19	43					0	0	1	0	0
ADH7	131	broad.mit.edu	37	4	100348997	100348997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100348997G>A	uc003huv.1	-	5	632	c.533C>T	c.(532-534)CCT>CTT	p.P178L		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	178					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	GACTTTCTCAGGAGGAGCTGC	0.443													15	62					0	0	1	0	0
C4orf17	84103	broad.mit.edu	37	4	100443816	100443816	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100443816G>A	uc003huw.2	+	3	610	c.287G>A	c.(286-288)GGA>GAA	p.G96E	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	96											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		CCTGTAAGAGGAATGTCGCCA	0.507													24	85					0	0	1	0	0
C4orf17	84103	broad.mit.edu	37	4	100463110	100463110	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100463110G>A	uc003huw.2	+	9	1247	c.924G>A	c.(922-924)ATG>ATA	p.M308I	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	308											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		GAAATAATATGAAAATACCTG	0.388													18	39					0	0	1	0	0
RG9MTD2	93587	broad.mit.edu	37	4	100472066	100472066	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100472066G>A	uc003huy.2	-	7	1040	c.727C>T	c.(727-729)CGA>TGA	p.R243*	RG9MTD2_uc003huz.3_Nonsense_Mutation_p.R243*|RG9MTD2_uc003hva.3_Nonsense_Mutation_p.R243*	NM_152292	NP_689505	Q8TBZ6	RG9D2_HUMAN	RNA (guanine-9-) methyltransferase domain	243							methyltransferase activity			ovary(2)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.7e-08)		AAAACTTTTCGACTATTCATC	0.348													10	27					0	0	1	0	0
MTTP	4547	broad.mit.edu	37	4	100504621	100504621	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100504621G>A	uc003hvc.3	+	4	596	c.340G>A	c.(340-342)GAA>AAA	p.E114K	MTTP_uc011cej.1_Missense_Mutation_p.E141K|MTTP_uc003hvb.2_Missense_Mutation_p.E114K	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	114	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	AATGGGAAAGGAAAACTTGGA	0.393													39	100					0	0	1	0	0
MTTP	4547	broad.mit.edu	37	4	100504670	100504670	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100504670G>A	uc003hvc.3	+	4	645	c.389G>A	c.(388-390)GGA>GAA	p.G130E	MTTP_uc011cej.1_Missense_Mutation_p.G157E|MTTP_uc003hvb.2_Missense_Mutation_p.G130E	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	130	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	CTAATCCATGGAAAGGTAAAG	0.378													21	63					0	0	1	0	0
MTTP	4547	broad.mit.edu	37	4	100510857	100510857	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100510857G>A	uc003hvc.3	+	5	707	c.451G>A	c.(451-453)GGT>AGT	p.G151S	MTTP_uc011cej.1_Missense_Mutation_p.G178S	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	151	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	TATCAAGAGAGGTCTGGCTAG	0.403													13	55					0	0	1	0	0
MTTP	4547	broad.mit.edu	37	4	100530112	100530112	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100530112C>T	uc003hvc.3	+	13	2003	c.1747C>T	c.(1747-1749)CTA>TTA	p.L583L	MTTP_uc011cej.1_Silent_p.L610L	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	583	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	TCAAGACATCCTACGTTTTGA	0.403													30	110					0	0	1	0	0
MTTP	4547	broad.mit.edu	37	4	100532314	100532314	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100532314G>A	uc003hvc.3	+	14	2040	c.1784G>A	c.(1783-1785)CGA>CAA	p.R595Q	MTTP_uc011cej.1_Missense_Mutation_p.R622Q	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	595	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	ATTGTCCGTCGAGTTCTGAAG	0.398													12	85					0	0	1	0	0
DAPP1	27071	broad.mit.edu	37	4	100738117	100738117	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:100738117C>T	uc003hvf.3	+	1	137	c.47C>T	c.(46-48)CCC>CTC	p.P16L	DAPP1_uc011cek.1_Missense_Mutation_p.P16L|DAPP1_uc010ilh.2_Missense_Mutation_p.P16L	NM_014395	NP_055210	Q9UN19	DAPP1_HUMAN	dual adaptor of phosphotyrosine and	16					signal transduction	cytoplasm|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein tyrosine phosphatase activity				0				OV - Ovarian serous cystadenocarcinoma(123;7.04e-09)		ACCCAGGATCCCTCAGATCTG	0.552													4	12					0	0	1	0	0
EMCN	51705	broad.mit.edu	37	4	101396232	101396232	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:101396232C>T	uc003hvr.2	-	3	401	c.222G>A	c.(220-222)CTG>CTA	p.L74L	EMCN_uc011cel.1_Silent_p.L74L|EMCN_uc011cem.1_Silent_p.L74L	NM_016242	NP_057326	Q9ULC0	MUCEN_HUMAN	endomucin isoform 1	74	Thr-rich.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(123;2.49e-08)		CTGTTGACATCAGAGACATTT	0.204													7	58					0	0	1	0	0
BANK1	55024	broad.mit.edu	37	4	102791757	102791757	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:102791757G>A	uc003hvy.3	+	5	1133	c.859G>A	c.(859-861)GAA>AAA	p.E287K	BANK1_uc003hvx.3_Missense_Mutation_p.E272K|BANK1_uc010ill.2_Missense_Mutation_p.E154K|BANK1_uc003hvz.3_Missense_Mutation_p.E257K	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	287	DBB.				B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		AAAGGCAAAGGAATGCCTATT	0.398													28	55					0	0	1	0	0
BANK1	55024	broad.mit.edu	37	4	102951139	102951139	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:102951139G>A	uc003hvy.3	+	10	1891	c.1617G>A	c.(1615-1617)ATG>ATA	p.M539I	BANK1_uc003hvx.3_Missense_Mutation_p.M524I|BANK1_uc010ill.2_Missense_Mutation_p.M406I|BANK1_uc003hvz.3_Missense_Mutation_p.M509I	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	539					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		AAGGCCAAATGGAAAGAAGTC	0.313													28	72					0	0	1	0	0
BANK1	55024	broad.mit.edu	37	4	102965001	102965001	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:102965001C>T	uc003hvy.3	+	11	2180	c.1906C>T	c.(1906-1908)CAA>TAA	p.Q636*	BANK1_uc003hvx.3_Nonsense_Mutation_p.Q621*|BANK1_uc010ill.2_Nonsense_Mutation_p.Q503*|BANK1_uc003hvz.3_Nonsense_Mutation_p.Q606*	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	636					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		TACAGTGTTTCAACAAAAGAC	0.328													73	153					0	0	1	0	0
SLC39A8	64116	broad.mit.edu	37	4	103188658	103188658	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:103188658G>A	uc003hwb.1	-	7	1751	c.1222C>T	c.(1222-1224)CTG>TTG	p.L408L	SLC39A8_uc011ceo.1_Silent_p.L408L|SLC39A8_uc003hwa.1_Silent_p.L341L|SLC39A8_uc003hwc.2_Silent_p.L408L	NM_022154	NP_071437	Q9C0K1	S39A8_HUMAN	solute carrier family 39 (zinc transporter),	408	Helical; (Potential).					integral to membrane|organelle membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(203;0.217)		all cancers(1;9.78e-10)|OV - Ovarian serous cystadenocarcinoma(123;1.52e-09)|GBM - Glioblastoma multiforme(1;0.000142)		ATATCTGCCAGAGAAATATAG	0.358													12	52					0	0	1	0	0
MANBA	4126	broad.mit.edu	37	4	103592516	103592516	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:103592516C>T	uc003hwg.2	-	9	1252	c.1152G>A	c.(1150-1152)ATG>ATA	p.M384I	MANBA_uc011ces.1_Missense_Mutation_p.M327I	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	384					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		GAAGAGTATTCATATTAGCAT	0.353													18	35					0	0	1	0	0
UBE2D3	7323	broad.mit.edu	37	4	103730987	103730987	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:103730987G>A	uc003hwk.2	-	3	511	c.50C>T	c.(49-51)CCT>CTT	p.P17L	UBE2D3_uc003hwi.2_Missense_Mutation_p.P17L|UBE2D3_uc003hwj.2_RNA|UBE2D3_uc003hwl.2_Missense_Mutation_p.P17L|UBE2D3_uc011cet.1_Missense_Mutation_p.P17L|UBE2D3_uc011ceu.1_Missense_Mutation_p.P17L|UBE2D3_uc003hwo.2_Missense_Mutation_p.P17L|UBE2D3_uc003hwp.2_Missense_Mutation_p.P17L|UBE2D3_uc003hwq.2_Missense_Mutation_p.P19L|UBE2D3_uc003hwr.2_Missense_Mutation_p.P17L	NM_181887	NP_871616	P61077	UB2D3_HUMAN	ubiquitin-conjugating enzyme E2D 3 isoform 1	17					apoptosis|BMP signaling pathway|DNA repair|negative regulation of type I interferon production|proteasomal ubiquitin-dependent protein catabolic process|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein monoubiquitination|transforming growth factor beta receptor signaling pathway	endosome membrane|plasma membrane	ATP binding|protein binding|ubiquitin-protein ligase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.13e-08)		TTGTGCTGGAGGGTCACGGGC	0.383													47	109					0	0	1	0	0
CENPE	1062	broad.mit.edu	37	4	104044065	104044065	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:104044065G>A	uc003hxb.1	-	43	7196	c.7106C>T	c.(7105-7107)CCT>CTT	p.P2369L	CENPE_uc003hxc.1_Missense_Mutation_p.P2248L	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	2369	Kinetochore-binding domain.|Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TGTAACATGAGGATTCTTATT	0.343													33	130					0	0	1	0	0
CENPE	1062	broad.mit.edu	37	4	104057386	104057386	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:104057386G>T	uc003hxb.1	-	40	6524	c.6434C>A	c.(6433-6435)CCC>CAC	p.P2145H	CENPE_uc003hxc.1_Missense_Mutation_p.P2024H	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	2145	Kinetochore-binding domain.|Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TTGTAAATAGGGAAGTGAGAG	0.358													47	105					1.06522e-23	1.07136e-23	1	1	0
CENPE	1062	broad.mit.edu	37	4	104061975	104061975	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:104061975G>A	uc003hxb.1	-	36	5840	c.5750C>T	c.(5749-5751)GCT>GTT	p.A1917V	CENPE_uc003hxc.1_Missense_Mutation_p.A1892V|CENPE_uc003hxd.1_5'Flank	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1917	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		ACTCACTCTAGCTTTGGTTTC	0.244													24	40					0	0	1	0	0
CENPE	1062	broad.mit.edu	37	4	104081828	104081828	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:104081828G>A	uc003hxb.1	-	21	2330	c.2240C>T	c.(2239-2241)TCA>TTA	p.S747L	CENPE_uc003hxc.1_Missense_Mutation_p.S722L	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	747	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TTTCAATTCTGAAAGCAAAAT	0.323													13	94					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104510873	104510873	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:104510873C>T	uc003hxe.1	-	5	1507	c.1364G>A	c.(1363-1365)AGC>AAC	p.S455N		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	455	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		ATAGGGTGAGCTTATGAAACT	0.468													47	135					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104511098	104511098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:104511098G>A	uc003hxe.1	-	5	1282	c.1139C>T	c.(1138-1140)TCC>TTC	p.S380F		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	380	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		ATCATAGCTGGAAACTTTGAT	0.453													19	69					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104640458	104640458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:104640458C>T	uc003hxe.1	-	1	518	c.375G>A	c.(373-375)GTG>GTA	p.V125V		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	125	Helical; Name=2; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		AAGCCAGGTTCACAAGGAAGT	0.537													19	57					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104640680	104640681	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:104640680_104640681GA>AT	uc003hxe.1	-	1	295_296	c.152_153TC>AT	c.(151-153)CTC>CAT	p.L51H		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	51	Extracellular (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		GGGAGGAGGAGAGGTTGCCAGC	0.698													26	42					0	0	1	0	0
TET2	54790	broad.mit.edu	37	4	106155373	106155373	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:106155373G>A	uc003hxk.2	+	3	660	c.274G>A	c.(274-276)GGA>AGA	p.G92R	TET2_uc011cez.1_Missense_Mutation_p.G113R|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.G92R|TET2_uc003hxi.1_Missense_Mutation_p.G92R	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	92					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TTTGCAAAATGGAGGAATAAA	0.403			Mis N|F		MDS								28	72					0	0	1	0	0
TET2	54790	broad.mit.edu	37	4	106155412	106155412	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:106155412G>A	uc003hxk.2	+	3	699	c.313G>A	c.(313-315)GGG>AGG	p.G105R	TET2_uc011cez.1_Missense_Mutation_p.G126R|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.G105R|TET2_uc003hxi.1_Missense_Mutation_p.G105R	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	105					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TTCTCTCTCTGGGCTCCTTCA	0.423			Mis N|F		MDS								26	53					0	0	1	0	0
PPA2	27068	broad.mit.edu	37	4	106317465	106317465	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:106317465G>A	uc003hxl.2	-	9	830	c.810C>T	c.(808-810)TCC>TCT	p.S270S	PPA2_uc003hxm.2_Silent_p.S252S|PPA2_uc003hxn.2_Silent_p.S241S|PPA2_uc003hxo.2_Silent_p.S168S|PPA2_uc003hxp.2_Silent_p.S104S|PPA2_uc003hxq.2_Silent_p.S177S|PPA2_uc003hxr.2_Silent_p.S177S	NM_176869	NP_789845	Q9H2U2	IPYR2_HUMAN	inorganic pyrophosphatase 2 isoform 1 precursor	270					diphosphate metabolic process|tRNA aminoacylation for protein translation	mitochondrial matrix	inorganic diphosphatase activity|magnesium ion binding			pancreas(1)	1		Myeloproliferative disorder(5;0.0255)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.03e-07)		ATTGATGAGTGGATTTAATAA	0.294													41	112					0	0	1	0	0
PPA2	27068	broad.mit.edu	37	4	106345444	106345444	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:106345444G>A	uc003hxl.2	-	7	584	c.564C>T	c.(562-564)ATC>ATT	p.I188I	PPA2_uc003hxm.2_Silent_p.I170I|PPA2_uc003hxn.2_Silent_p.I159I|PPA2_uc003hxo.2_Silent_p.I86I|PPA2_uc003hxp.2_Intron|PPA2_uc003hxq.2_Silent_p.I95I|PPA2_uc003hxr.2_Silent_p.I95I|PPA2_uc011cfa.1_Silent_p.I95I	NM_176869	NP_789845	Q9H2U2	IPYR2_HUMAN	inorganic pyrophosphatase 2 isoform 1 precursor	188					diphosphate metabolic process|tRNA aminoacylation for protein translation	mitochondrial matrix	inorganic diphosphatase activity|magnesium ion binding			pancreas(1)	1		Myeloproliferative disorder(5;0.0255)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.03e-07)		AAATTCCAAGGATCTTCACAT	0.338													35	83					0	0	1	0	0
PPA2	27068	broad.mit.edu	37	4	106367581	106367581	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:106367581G>A	uc003hxl.2	-	5	420	c.400C>T	c.(400-402)CCT>TCT	p.P134S	PPA2_uc003hxm.2_Missense_Mutation_p.P116S|PPA2_uc003hxn.2_Missense_Mutation_p.P134S|PPA2_uc003hxo.2_Intron|PPA2_uc003hxp.2_Intron|PPA2_uc003hxq.2_Missense_Mutation_p.P41S|PPA2_uc003hxr.2_Missense_Mutation_p.P41S|PPA2_uc011cfa.1_Missense_Mutation_p.P41S	NM_176869	NP_789845	Q9H2U2	IPYR2_HUMAN	inorganic pyrophosphatase 2 isoform 1 precursor	134					diphosphate metabolic process|tRNA aminoacylation for protein translation	mitochondrial matrix	inorganic diphosphatase activity|magnesium ion binding			pancreas(1)	1		Myeloproliferative disorder(5;0.0255)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.03e-07)		CCCTTGTAAGGGAAGATATTC	0.373													12	144					0	0	1	0	0
EEF1A1P9	441032	broad.mit.edu	37	4	106406402	106406402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:106406402C>T	uc003hxt.1	+	1	540	c.410C>T	c.(409-411)ACC>ATC	p.T137I		NR_003586				SubName: Full=Eukaryotic translation elongation factor 1 alpha; Flags: Fragment;												0						GGCCACAACACCGACACAGTA	0.453													19	53					0	0	1	0	0
ARHGEF38	54848	broad.mit.edu	37	4	106534592	106534592	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:106534592C>T	uc003hxu.2	+	3	582	c.436C>T	c.(436-438)CAG>TAG	p.Q146*		NM_017700	NP_060170	Q9NXL2	ARH38_HUMAN	hypothetical protein LOC54848	146	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|breast(1)	3						GTCCGTGCATCAGATATCAGC	0.438													12	157					0	0	1	0	0
INTS12	57117	broad.mit.edu	37	4	106621017	106621017	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:106621017G>A	uc003hxw.2	-	3	404	c.146C>T	c.(145-147)CCA>CTA	p.P49L	INTS12_uc010ilr.2_Missense_Mutation_p.P49L	NM_020395	NP_065128	Q96CB8	INT12_HUMAN	integrator complex subunit 12	49					snRNA processing	integrator complex	protein binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;5.12e-07)		CTTTTGAGATGGACGGTAACT	0.388													27	226					0	0	1	0	0
TBCK	93627	broad.mit.edu	37	4	107230086	107230086	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:107230086G>A	uc010ilv.2	-	2	397	c.32C>T	c.(31-33)GCC>GTC	p.A11V	TBCK_uc003hye.2_Missense_Mutation_p.A11V|TBCK_uc003hyc.2_Missense_Mutation_p.A11V|TBCK_uc003hyd.2_5'UTR|TBCK_uc003hyf.2_Missense_Mutation_p.A11V	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	11	Protein kinase.					intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						GAAGGTAAAGGCTCCCATTTC	0.428													20	38					0	0	1	0	0
DKK2	27123	broad.mit.edu	37	4	107845226	107845226	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:107845226G>A	uc003hyi.2	-	4	1370	c.665C>T	c.(664-666)TCT>TTT	p.S222F	DKK2_uc003hyj.1_3'UTR	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	222	DKK-type Cys-2.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space		p.S222F(1)		ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		CAGCCCATGAGAACCCTTCTT	0.502													45	128					0	0	1	0	0
DKK2	27123	broad.mit.edu	37	4	107956543	107956544	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:107956543_107956544CC>TT	uc003hyi.2	-	1	910_911	c.205_206GG>AA	c.(205-207)GGC>AAC	p.G69N	DKK2_uc010ilw.1_Intron|DKK2_uc003hyj.1_Missense_Mutation_p.G69N	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	69					multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		CAGGTTTTTGCCCTTCTTACTG	0.579													11	77					0	0	1	0	0
PAPSS1	9061	broad.mit.edu	37	4	108608330	108608330	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:108608330G>A	uc003hyk.2	-	4	499	c.415C>T	c.(415-417)CGC>TGC	p.R139C	PAPSS1_uc011cfh.1_Intron	NM_005443	NP_005434	O43252	PAPS1_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase	139	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|sulfate adenylyltransferase (ATP) activity			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.49e-05)		GCATTGTTGCGATCCttaaaa	0.328													26	48					0	0	1	0	0
COL25A1	84570	broad.mit.edu	37	4	109762861	109762861	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:109762861G>A	uc003hze.1	-	30	2177	c.1646C>T	c.(1645-1647)CCT>CTT	p.P549L	COL25A1_uc003hzg.2_Missense_Mutation_p.P549L|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.P307L	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	549	Extracellular (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		CTTTGGTCCAGGAAGTCCATG	0.363													20	36					0	0	1	0	0
COL25A1	84570	broad.mit.edu	37	4	109766349	109766349	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:109766349G>A	uc003hze.1	-	28	2105	c.1574C>T	c.(1573-1575)CCT>CTT	p.P525L	COL25A1_uc003hzg.2_Missense_Mutation_p.P525L|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.P283L	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	525	Extracellular (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		ACTTACAGAAGGACCCTGTGG	0.453													70	184					0	0	1	0	0
COL25A1	84570	broad.mit.edu	37	4	109780861	109780861	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:109780861C>T	uc003hze.1	-	23	1802	c.1271G>A	c.(1270-1272)GGA>GAA	p.G424E	COL25A1_uc003hzg.2_Missense_Mutation_p.G424E|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.G190E	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	424	Extracellular (Potential).|Collagen-like 5.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		CTCAGTGGCTCCTTGATCCCC	0.507													12	35					0	0	1	0	0
COL25A1	84570	broad.mit.edu	37	4	110222987	110222987	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110222987G>A	uc003hze.1	-	2	720	c.189C>T	c.(187-189)ATC>ATT	p.I63I	COL25A1_uc003hzg.2_Silent_p.I63I|COL25A1_uc003hzh.1_Silent_p.I63I	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	63	Extracellular (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		CGAGAGCGGCGATCCTCGCCT	0.607													11	149					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	110268668	110268668	+	RNA	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110268668C>A	uc003hzi.1	-	8		c.1396G>T								Homo sapiens cDNA FLJ25407 fis, clone TST02904.																		ATTCAAGCTCCAACGAGCTTG	0.527													11	25					6.40141e-05	6.41031e-05	1	1	0
SEC24B	10427	broad.mit.edu	37	4	110447439	110447439	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110447439C>T	uc003hzk.2	+	17	2904	c.2849C>T	c.(2848-2850)TCC>TTC	p.S950F	SEC24B_uc003hzl.2_Missense_Mutation_p.S915F|SEC24B_uc011cfp.1_Missense_Mutation_p.S980F|SEC24B_uc011cfq.1_Missense_Mutation_p.S949F|SEC24B_uc011cfr.1_Missense_Mutation_p.S914F	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	950					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		GATTTGTTATCCCTTGCCAAC	0.348													39	88					0	0	1	0	0
CFI	3426	broad.mit.edu	37	4	110662232	110662232	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110662232C>T	uc003hzr.3	-	13	1777	c.1569G>A	c.(1567-1569)GGG>GGA	p.G523G	CFI_uc003hzq.2_Silent_p.G320G|CFI_uc011cft.1_Silent_p.G531G|CFI_uc003hzs.3_Silent_p.G516G	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	523	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		CTCCAGAGTCCCCTTTACAGG	0.463													86	204					0	0	1	0	0
CFI	3426	broad.mit.edu	37	4	110670406	110670406	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110670406G>A	uc003hzr.3	-	10	1324	c.1116C>T	c.(1114-1116)GGC>GGT	p.G372G	CFI_uc003hzq.2_Silent_p.G169G|CFI_uc011cft.1_Silent_p.G380G|CFI_uc003hzs.3_Silent_p.G365G	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	372	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		GAATCCAACAGCCACCAATAT	0.438													104	264					0	0	1	0	0
CFI	3426	broad.mit.edu	37	4	110681737	110681737	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110681737C>T	uc003hzr.3	-	5	922	c.714G>A	c.(712-714)ATG>ATA	p.M238I	CFI_uc003hzq.2_Missense_Mutation_p.M35I|CFI_uc011cft.1_Missense_Mutation_p.M238I|CFI_uc003hzs.3_Missense_Mutation_p.M238I	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	238	LDL-receptor class A 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		CACAGGCTTTCATCTGAGAAA	0.348													30	68					0	0	1	0	0
RRH	10692	broad.mit.edu	37	4	110763652	110763652	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110763652C>T	uc003hzv.2	+	6	782	c.748C>T	c.(748-750)CTG>TTG	p.L250L		NM_006583	NP_006574	O14718	OPSX_HUMAN	peropsin	250	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00109)		CTGCATGTTTCTGGTGGCATG	0.398													39	135					0	0	1	0	0
LRIT3	345193	broad.mit.edu	37	4	110788861	110788861	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110788861C>T	uc003hzx.3	+	2	712	c.519C>T	c.(517-519)GTC>GTT	p.V173V	LRIT3_uc003hzw.3_Silent_p.V35V	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	173	LRRCT.					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		TGTCAAAGGTCGTTGACCCTG	0.443													26	78					0	0	1	0	0
LRIT3	345193	broad.mit.edu	37	4	110791056	110791056	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110791056C>T	uc003hzx.3	+	3	1209	c.1016C>T	c.(1015-1017)TCA>TTA	p.S339L	LRIT3_uc003hzw.3_Missense_Mutation_p.S201L	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	339	Ser-rich.					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		AGCGCATCATCATATCTTTGG	0.259													56	133					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110864522	110864522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110864522G>A	uc003hzy.3	+	3	892	c.440G>A	c.(439-441)GGA>GAA	p.G147E	EGF_uc011cfu.1_Missense_Mutation_p.G147E|EGF_uc011cfv.1_Missense_Mutation_p.G147E	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	147	LDL-receptor class B 2.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	GATATGAAAGGAAATAATTCC	0.308													35	76					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110864539	110864539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110864539C>T	uc003hzy.3	+	3	909	c.457C>T	c.(457-459)CTT>TTT	p.L153F	EGF_uc011cfu.1_Missense_Mutation_p.L153F|EGF_uc011cfv.1_Missense_Mutation_p.L153F	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	153	LDL-receptor class B 2.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	TTCCCACATTCTTTTAAGTGC	0.308													20	84					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110882049	110882049	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110882049C>T	uc003hzy.3	+	7	1545	c.1093C>T	c.(1093-1095)CAT>TAT	p.H365Y	EGF_uc011cfu.1_Missense_Mutation_p.H323Y|EGF_uc011cfv.1_Missense_Mutation_p.H365Y	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	365	EGF-like 2; calcium-binding (Potential).|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	TTTTTGGAATCATGGCTGTAC	0.388													16	69					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110901982	110901982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110901982G>A	uc003hzy.3	+	15	2674	c.2222G>A	c.(2221-2223)GGA>GAA	p.G741E	EGF_uc011cfu.1_Missense_Mutation_p.G699E|EGF_uc011cfv.1_Missense_Mutation_p.G741E|EGF_uc010imk.2_5'UTR	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	741	Extracellular (Potential).|EGF-like 5.				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	TCTCTACTAGGAGCAGATCCC	0.408													29	88					0	0	1	0	0
ELOVL6	79071	broad.mit.edu	37	4	110972698	110972698	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:110972698G>A	uc003hzz.2	-	5	720	c.594C>T	c.(592-594)ATC>ATT	p.I198I	ELOVL6_uc003iaa.2_Silent_p.I198I	NM_001130721	NP_001124193	Q9H5J4	ELOV6_HUMAN	elongation of very long chain fatty acids-like	198	Helical; (Potential).				fatty acid elongation, saturated fatty acid|long-chain fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process		fatty acid elongase activity|protein binding			haematopoietic_and_lymphoid_tissue(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00462)		GGGACAAGGTGATGAACATGG	0.517													31	63					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111397710	111397710	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:111397710G>A	uc003iab.3	+	1	482	c.140G>A	c.(139-141)GGG>GAG	p.G47E		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	47	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	GACTCCAGCGGGGACGGCGGG	0.632													46	131					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111397755	111397755	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:111397755C>T	uc003iab.3	+	1	527	c.185C>T	c.(184-186)TCT>TTT	p.S62F		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	62	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CACCTGCCTTCTTCCACGGCC	0.637													19	89					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111398053	111398054	+	Missense_Mutation	DNP	CG	TA	TA	rs146450390		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:111398053_111398054CG>TA	uc003iab.3	+	1	825_826	c.483_484CG>TA	c.(481-486)TTCGAG>TTTAAG	p.E162K		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	162	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding	p.F161F(1)		skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	GGAGGTGTTTCGAGTACAAAAA	0.629													54	143					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111398117	111398117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:111398117G>A	uc003iab.3	+	1	889	c.547G>A	c.(547-549)GAT>AAT	p.D183N		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	183	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CAGCAGTGGAGATGGCCTGTA	0.572													40	93					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111409812	111409813	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:111409812_111409813GG>AA	uc003iab.3	+	2	1102_1103	c.760_761GG>AA	c.(760-762)GGA>AAA	p.G254K		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	254	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CAAAGAATACGGAGCACTTTCA	0.386													28	70					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111441412	111441412	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:111441412C>T	uc003iab.3	+	10	1959	c.1617C>T	c.(1615-1617)ACC>ACT	p.T539T		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	539	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	ACACCTGGACCAGACAGATGG	0.403													30	77					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111470544	111470544	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:111470544G>A	uc003iab.3	+	15	2536	c.2194G>A	c.(2194-2196)GGA>AGA	p.G732R		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	732	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	AGATTCTCTGGGATGGAATGA	0.313													16	76					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111470890	111470890	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:111470890G>A	uc003iab.3	+	17	2691	c.2349G>A	c.(2347-2349)AGG>AGA	p.R783R		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	783	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TAAATCTCAGGCTTCTGGTGT	0.388													18	104					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111474509	111474509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:111474509C>T	uc003iab.3	+	18	2882	c.2540C>T	c.(2539-2541)ACT>ATT	p.T847I		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	847	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CTTATTAAAACTCAGGATGTG	0.368													29	132					0	0	1	0	0
ALPK1	80216	broad.mit.edu	37	4	113298936	113298936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:113298936G>A	uc003iap.3	+	3	282	c.3G>A	c.(1-3)ATG>ATA	p.M1I	ALPK1_uc003iam.2_Missense_Mutation_p.M1I|ALPK1_uc011cfw.1_RNA|ALPK1_uc003ian.3_Missense_Mutation_p.M1I|ALPK1_uc011cfx.1_5'UTR|ALPK1_uc003iao.3_RNA	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	1							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		TAATCATCATGAATAATCAAA	0.473													49	194					0	0	1	0	0
ALPK1	80216	broad.mit.edu	37	4	113348734	113348734	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:113348734C>T	uc003iap.3	+	9	987	c.708C>T	c.(706-708)TCC>TCT	p.S236S	ALPK1_uc003ian.3_Silent_p.S236S|ALPK1_uc011cfx.1_Silent_p.S158S|ALPK1_uc003iao.3_RNA|ALPK1_uc010imo.2_Silent_p.S64S	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	236							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		AGGGCCTCTCCACGTCGCTAG	0.383													6	69					0	0	1	0	0
ALPK1	80216	broad.mit.edu	37	4	113352918	113352918	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:113352918C>T	uc003iap.3	+	11	2494	c.2215C>T	c.(2215-2217)CAA>TAA	p.Q739*	ALPK1_uc003ian.3_Nonsense_Mutation_p.Q739*|ALPK1_uc011cfx.1_Nonsense_Mutation_p.Q661*|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Nonsense_Mutation_p.Q567*	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	739							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		TCCTTCAGTCCAAAAAGAAGA	0.443													37	64					0	0	1	0	0
ALPK1	80216	broad.mit.edu	37	4	113352931	113352931	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:113352931C>T	uc003iap.3	+	11	2507	c.2228C>T	c.(2227-2229)GCC>GTC	p.A743V	ALPK1_uc003ian.3_Missense_Mutation_p.A743V|ALPK1_uc011cfx.1_Missense_Mutation_p.A665V|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Missense_Mutation_p.A571V	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	743							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		AAAGAAGAAGCCTTTGAAATA	0.468													27	71					0	0	1	0	0
C4orf21	55345	broad.mit.edu	37	4	113508735	113508735	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:113508735G>A	uc003iau.2	-	12	3689	c.3478C>T	c.(3478-3480)CCA>TCA	p.P1160S	C4orf21_uc003iav.2_RNA	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		ACTCTGTTTGGAGTAGCCACG	0.408													87	155					0	0	1	0	0
C4orf21	55345	broad.mit.edu	37	4	113510953	113510953	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:113510953G>A	uc003iau.2	-	11	3265	c.3054C>T	c.(3052-3054)TTC>TTT	p.F1018F	C4orf21_uc003iav.2_5'Flank|C4orf21_uc003iaw.2_Silent_p.F1018F	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		ATTCTACCATGAAGTCTTCAT	0.383													27	85					0	0	1	0	0
C4orf21	55345	broad.mit.edu	37	4	113527243	113527243	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:113527243G>A	uc003iau.2	-	9	2934	c.2723C>T	c.(2722-2724)TCT>TTT	p.S908F	C4orf21_uc003iaw.2_Missense_Mutation_p.S908F	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		TCCCGAGGAAGAGAACTAGGA	0.323													31	69					0	0	1	0	0
C4orf21	55345	broad.mit.edu	37	4	113538641	113538641	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:113538641G>A	uc003iau.2	-	6	2768	c.2557C>T	c.(2557-2559)CAG>TAG	p.Q853*	C4orf21_uc003iaw.2_Nonsense_Mutation_p.Q853*	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		GTTCCTTGCTGAAAGACAGTA	0.348													24	77					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114120263	114120263	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114120263C>T	uc003ibe.3	+	4	482	c.382C>T	c.(382-384)CAG>TAG	p.Q128*	ANK2_uc003ibd.3_Nonsense_Mutation_p.Q107*|ANK2_uc003ibf.3_Nonsense_Mutation_p.Q128*|ANK2_uc003ibc.2_Nonsense_Mutation_p.Q104*|ANK2_uc011cgb.1_Nonsense_Mutation_p.Q143*	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	128					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGCACAGTCTCAGGTATTCCA	0.358													19	52					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114153329	114153329	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114153329C>T	uc003ibe.3	+	5	497	c.397C>T	c.(397-399)CCT>TCT	p.P133S	ANK2_uc003ibd.3_Missense_Mutation_p.P112S|ANK2_uc003ibf.3_Missense_Mutation_p.P133S|ANK2_uc003ibc.2_Missense_Mutation_p.P109S|ANK2_uc011cgb.1_Missense_Mutation_p.P148S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	133	ANK 4.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGGCTTTACTCCTTTATACAT	0.393													25	78					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114223968	114223968	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114223968G>A	uc003ibe.3	+	23	2621	c.2521G>A	c.(2521-2523)GAG>AAG	p.E841K	ANK2_uc003ibd.3_Missense_Mutation_p.E820K|ANK2_uc003ibf.3_Missense_Mutation_p.E841K|ANK2_uc011cgc.1_Missense_Mutation_p.E50K|ANK2_uc003ibc.2_Missense_Mutation_p.E817K|ANK2_uc011cgb.1_Missense_Mutation_p.E856K	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	841					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GACGATGACTGAGGTTCTTGA	0.333													31	95					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114267166	114267166	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114267166G>A	uc003ibe.3	+	35	4459	c.4359G>A	c.(4357-4359)CCG>CCA	p.P1453P	ANK2_uc003ibd.3_Silent_p.P1444P|ANK2_uc003ibf.3_Silent_p.P1453P|ANK2_uc011cgc.1_Silent_p.P629P|ANK2_uc003ibg.3_Silent_p.P448P|ANK2_uc003ibh.3_Silent_p.P127P|ANK2_uc011cgb.1_Silent_p.P1468P	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1420					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TCACTTTGCCGATTTATACAA	0.373													14	99					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114275491	114275491	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114275491C>T	uc003ibe.3	+	38	5817	c.5717C>T	c.(5716-5718)CCT>CTT	p.P1906L	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.P1921L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1873	Repeat-rich region.|Repeat A.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CCTGTTTCGCCTTCAGGCAAA	0.488													22	67					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114275979	114275979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114275979C>T	uc003ibe.3	+	38	6305	c.6205C>T	c.(6205-6207)CGT>TGT	p.R2069C	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.R2084C	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2036					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AAGAGGAGTTCGTGTTTCCTC	0.468													76	50					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114276620	114276620	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114276620C>T	uc003ibe.3	+	38	6946	c.6846C>T	c.(6844-6846)ACC>ACT	p.T2282T	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Silent_p.T2297T	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2249					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ATCCCACGACCAAAGACATTA	0.483													12	39					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114277055	114277055	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114277055C>T	uc003ibe.3	+	38	7381	c.7281C>T	c.(7279-7281)GAC>GAT	p.D2427D	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Silent_p.D2442D	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2394					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGGCTGATGACTCATTAGCAG	0.502													24	48					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114277282	114277283	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114277282_114277283CC>TT	uc003ibe.3	+	38	7608_7609	c.7508_7509CC>TT	c.(7507-7509)GCC>GTT	p.A2503V	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Missense_Mutation_p.A2518V	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2470					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ACGGAAGTGGCCTCTGTGCGGT	0.535													24	108					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114277759	114277759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114277759C>T	uc003ibe.3	+	38	8085	c.7985C>T	c.(7984-7986)TCC>TTC	p.S2662F	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Missense_Mutation_p.S2677F	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2629					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AAGGTGTCTTCCTCCTCAGAA	0.478													22	68					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114277763	114277763	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114277763C>T	uc003ibe.3	+	38	8089	c.7989C>T	c.(7987-7989)TCC>TCT	p.S2663S	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Silent_p.S2678S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2630					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGTCTTCCTCCTCAGAAAGTG	0.478													21	69					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114278641	114278641	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114278641C>T	uc003ibe.3	+	38	8967	c.8867C>T	c.(8866-8868)TCT>TTT	p.S2956F	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.S258F|ANK2_uc011cgb.1_Missense_Mutation_p.S2971F	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2923					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AGTTTTCACTCTTCTGAAGTG	0.393													56	245					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114279872	114279872	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114279872C>T	uc003ibe.3	+	38	10198	c.10098C>T	c.(10096-10098)ACC>ACT	p.T3366T	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Silent_p.T668T|ANK2_uc011cgb.1_Silent_p.T3381T	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3333					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ATCTAGACACCTCTGTCCAGA	0.458													13	128					0	0	1	0	0
CAMK2D	817	broad.mit.edu	37	4	114438809	114438809	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114438809G>A	uc003ibi.2	-	9	1465	c.606C>T	c.(604-606)GTC>GTT	p.V202V	CAMK2D_uc003ibj.2_Silent_p.V202V|CAMK2D_uc003ibk.2_Silent_p.V202V|CAMK2D_uc003ibo.3_Silent_p.V202V|CAMK2D_uc003ibm.2_Silent_p.V202V|CAMK2D_uc003ibn.2_Silent_p.V202V|CAMK2D_uc003ibl.2_Silent_p.V202V	NM_001221	NP_001212	Q13557	KCC2D_HUMAN	calcium/calmodulin-dependent protein kinase II	202	Protein kinase.				interferon-gamma-mediated signaling pathway|regulation of cell growth|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1		Ovarian(17;0.00369)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000271)		TATAGAGAATGACACCTGGAG	0.373													13	96					0	0	1	0	0
ARSJ	79642	broad.mit.edu	37	4	114823558	114823558	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:114823558C>T	uc003ibq.1	-	2	2560	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	ARSJ_uc010imu.1_Missense_Mutation_p.E558K|ARSJ_uc010imv.1_Missense_Mutation_p.E386K	NM_024590	NP_078866	Q5FYB0	ARSJ_HUMAN	arylsulfatase J precursor	558						extracellular region	arylsulfatase activity|metal ion binding			ovary(1)	1		Ovarian(17;0.0035)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00194)		ttcttggtttcctcttTATAC	0.299													11	25					0	0	1	0	0
UGT8	7368	broad.mit.edu	37	4	115544705	115544705	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:115544705C>T	uc003ibs.2	+	2	1191	c.669C>T	c.(667-669)AAC>AAT	p.N223N	UGT8_uc003ibt.2_Silent_p.N223N|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	223					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		AGAAGTACAACCTGCTGCCAG	0.463													44	78					0	0	1	0	0
UGT8	7368	broad.mit.edu	37	4	115544823	115544823	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:115544823G>A	uc003ibs.2	+	2	1309	c.787G>A	c.(787-789)GGA>AGA	p.G263R	UGT8_uc003ibt.2_Missense_Mutation_p.G263R|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	263					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		TTATGTAGGAGGAATCCTAAC	0.423													33	72					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115997368	115997368	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:115997368C>T	uc003ibu.2	-	2	1504	c.825G>A	c.(823-825)TTG>TTA	p.L275L	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	275	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GCCAAAAGTTCAAGTTGTTGC	0.453													56	148					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115997406	115997406	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:115997406G>A	uc003ibu.2	-	2	1466	c.787C>T	c.(787-789)CAT>TAT	p.H263Y	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	263	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ATTCCATCATGAAGCCCCAGA	0.438													48	166					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115997556	115997556	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:115997556C>T	uc003ibu.2	-	2	1316	c.637G>A	c.(637-639)GGC>AGC	p.G213S	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	213	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GGAAGAGGGCCTTTCTCAACC	0.408													34	100					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115997965	115997965	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:115997965C>T	uc003ibu.2	-	2	907	c.228G>A	c.(226-228)ACG>ACA	p.T76T	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	76	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CAGTAGGGTCCGTTTTGGATG	0.418													41	81					0	0	1	0	0
TRAM1L1	133022	broad.mit.edu	37	4	118005533	118005533	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:118005533C>T	uc003ibv.3	-	1	1204	c.1017G>A	c.(1015-1017)TCG>TCA	p.S339S		NM_152402	NP_689615	Q8N609	TR1L1_HUMAN	translocation associated membrane protein 1-like	339	Cytoplasmic (Potential).				protein transport|transmembrane transport	endoplasmic reticulum membrane|integral to membrane				central_nervous_system(1)	1						TAGAAGATCTCGACCGTTTCT	0.403													81	169					0	0	1	0	0
NDST3	9348	broad.mit.edu	37	4	119036026	119036026	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119036026C>T	uc003ibx.2	+	4	1538	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S	NDST3_uc011cgf.1_Intron	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	379	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						CTGGTGGTTTCCTCACATGTG	0.443													23	72					0	0	1	0	0
NDST3	9348	broad.mit.edu	37	4	119064785	119064785	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119064785G>A	uc003ibx.2	+	6	1888	c.1485G>A	c.(1483-1485)GAG>GAA	p.E495E	NDST3_uc011cgf.1_Silent_p.E414E	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	495	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						GTCCTAAAGAGCTGGATAAGA	0.403													28	52					0	0	1	0	0
PRSS12	8492	broad.mit.edu	37	4	119256682	119256682	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119256682C>T	uc003ica.1	-	3	813	c.766G>A	c.(766-768)GGT>AGT	p.G256S		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	256	SRCR 1.					membrane	scavenger receptor activity			skin(1)	1						CACACCCCACCCTGCCAGATG	0.423													37	95					0	0	1	0	0
SEC24D	9871	broad.mit.edu	37	4	119652620	119652620	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119652620G>A	uc003ici.3	-	21	2991	c.2719C>T	c.(2719-2721)CGT>TGT	p.R907C	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Missense_Mutation_p.R908C|SEC24D_uc003ick.2_Missense_Mutation_p.R69C	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	907					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						TCAGAGCAACGAACGGCAGCA	0.408													45	98					0	0	1	0	0
SEC24D	9871	broad.mit.edu	37	4	119736782	119736782	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119736782G>A	uc003ici.3	-	5	769	c.497C>T	c.(496-498)CCT>CTT	p.P166L	SEC24D_uc003icj.3_Missense_Mutation_p.P166L|SEC24D_uc003icl.2_RNA|SEC24D_uc010imz.1_RNA|SEC24D_uc011cgg.1_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	166	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						TTGAGATCCAGGCTGCAAAAT	0.582													18	50					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951748	119951748	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119951748C>T	uc003icm.3	+	4	2014	c.1818C>T	c.(1816-1818)ACC>ACT	p.T606T	SYNPO2_uc010ina.2_Silent_p.T606T|SYNPO2_uc010inb.2_Silent_p.T606T|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Silent_p.T534T	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	606	Pro-rich.					nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TCTCGCCAACCCGAAACATGA	0.557													33	135					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119952418	119952418	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119952418G>A	uc003icm.3	+	4	2684	c.2488G>A	c.(2488-2490)GGA>AGA	p.G830R	SYNPO2_uc010ina.2_Missense_Mutation_p.G830R|SYNPO2_uc010inb.2_Missense_Mutation_p.G830R|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.G758R	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	830						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TCCCTTCAAAGGACCACAAGC	0.532													21	51					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119952828	119952828	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119952828G>A	uc003icm.3	+	4	3094	c.2898G>A	c.(2896-2898)AAG>AAA	p.K966K	SYNPO2_uc010ina.2_Silent_p.K966K|SYNPO2_uc010inb.2_Silent_p.K966K|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Silent_p.K894K	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	966						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						ATGTCATGAAGCACCAACCGT	0.498													19	58					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119952897	119952897	+	Silent	SNP	C	T	T	rs145945905		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119952897C>T	uc003icm.3	+	4	3163	c.2967C>T	c.(2965-2967)CCC>CCT	p.P989P	SYNPO2_uc010ina.2_Silent_p.P989P|SYNPO2_uc010inb.2_Silent_p.P989P|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Silent_p.P917P	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	989						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						ATGGCCTCCCCCAGAAGTCAT	0.512													5	60					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119953055	119953055	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119953055C>T	uc003icm.3	+	4	3321	c.3125C>T	c.(3124-3126)TCA>TTA	p.S1042L	SYNPO2_uc010ina.2_Missense_Mutation_p.S1042L|SYNPO2_uc010inb.2_Missense_Mutation_p.S1042L|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Intron	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	1042						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						GAGGCCTCCTCACCAGTCAGT	0.542													20	59					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119953070	119953070	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119953070C>T	uc003icm.3	+	4	3336	c.3140C>T	c.(3139-3141)TCC>TTC	p.S1047F	SYNPO2_uc010ina.2_Missense_Mutation_p.S1047F|SYNPO2_uc010inb.2_Missense_Mutation_p.S1047F|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Intron	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	1047						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						GTCAGTGCATCCCCAGTGCCT	0.532													19	53					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119978560	119978560	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:119978560G>C	uc010inb.2	+	5	3453	c.3257G>C	c.(3256-3258)AGT>ACT	p.S1086T	SYNPO2_uc011cgh.1_Missense_Mutation_p.V88L|SYNPO2_uc010inc.2_Missense_Mutation_p.S956T	NM_133477	NP_597734	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TTTTAGGAGAGTGGGCGCTCC	0.408													21	55					0	0	1	0	0
MYOZ2	51778	broad.mit.edu	37	4	120079232	120079232	+	Missense_Mutation	SNP	C	T	T	rs138061447		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:120079232C>T	uc003icp.3	+	4	515	c.302C>T	c.(301-303)TCG>TTG	p.S101L		NM_016599	NP_057683	Q9NPC6	MYOZ2_HUMAN	myozenin 2	101							protein phosphatase 2B binding				0						GAAGGTGGTTCGCAGCAAGCC	0.463													53	118					0	0	1	0	0
MYOZ2	51778	broad.mit.edu	37	4	120085516	120085516	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:120085516A>T	uc003icp.3	+	5	740	c.527A>T	c.(526-528)AAG>ATG	p.K176M		NM_016599	NP_057683	Q9NPC6	MYOZ2_HUMAN	myozenin 2	176							protein phosphatase 2B binding				0						CCTGAAGGAAAGGCAGAACTG	0.423													27	76					0	0	1	0	0
USP53	54532	broad.mit.edu	37	4	120192591	120192591	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:120192591C>T	uc003ics.3	+	15	2642	c.1576C>T	c.(1576-1578)CGA>TGA	p.R526*	USP53_uc003icr.3_Nonsense_Mutation_p.R526*|USP53_uc003icu.3_Nonsense_Mutation_p.R149*|USP53_uc003ict.2_Nonsense_Mutation_p.R149*	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	526					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						ACCTCAGAGTCGAGCTTCTGC	0.398													31	71					0	0	1	0	0
FABP2	2169	broad.mit.edu	37	4	120240735	120240735	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:120240735C>T	uc003icw.2	-	3	363	c.304G>A	c.(304-306)GAA>AAA	p.E102K		NM_000134	NP_000125	P12104	FABPI_HUMAN	intestinal fatty acid binding protein 2	102							fatty acid binding			ovary(1)	1						GTATTCAGTTCGTTTCCATTG	0.308													23	53					0	0	1	0	0
PRDM5	11107	broad.mit.edu	37	4	121631514	121631514	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121631514G>A	uc003idn.2	-	15	1928	c.1678C>T	c.(1678-1680)CTG>TTG	p.L560L	PRDM5_uc003ido.2_Silent_p.L529L|PRDM5_uc010ine.2_Missense_Mutation_p.P500L	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	560	C2H2-type 14.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TGCTCATCCAGGCCTCGCTTC	0.473													17	35					0	0	1	0	0
PRDM5	11107	broad.mit.edu	37	4	121774626	121774626	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121774626G>A	uc003idn.2	-	3	497	c.247C>T	c.(247-249)CGC>TGC	p.R83C	PRDM5_uc003ido.2_Missense_Mutation_p.R83C|PRDM5_uc010ine.2_Missense_Mutation_p.R83C|PRDM5_uc010inf.2_Missense_Mutation_p.R83C|PRDM5_uc003idp.1_Missense_Mutation_p.R83C	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	83	SET.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TGAACGAAGCGAAGCCAGTTG	0.468													36	426					0	0	1	0	0
PRDM5	11107	broad.mit.edu	37	4	121774677	121774677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121774677C>T	uc003idn.2	-	3	446	c.196G>A	c.(196-198)GAA>AAA	p.E66K	PRDM5_uc003ido.2_Missense_Mutation_p.E66K|PRDM5_uc010ine.2_Missense_Mutation_p.E66K|PRDM5_uc010inf.2_Missense_Mutation_p.E66K|PRDM5_uc003idp.1_Missense_Mutation_p.E66K	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	66	SET.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TACAAAACTTCTCCCTTACTC	0.453													68	307					0	0	1	0	0
PRDM5	11107	broad.mit.edu	37	4	121774680	121774681	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121774680_121774681CC>TT	uc003idn.2	-	3	442_443	c.192_193GG>AA	c.(190-195)AAGGGA>AAAAGA	p.G65R	PRDM5_uc003ido.2_Missense_Mutation_p.G65R|PRDM5_uc010ine.2_Missense_Mutation_p.G65R|PRDM5_uc010inf.2_Missense_Mutation_p.G65R|PRDM5_uc003idp.1_Missense_Mutation_p.G65R	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	65	SET.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						AAAACTTCTCCCTTACTCCCAC	0.45													28	337					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121957514	121957514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121957514C>T	uc003idq.1	-	4	2139	c.1612G>A	c.(1612-1614)GGC>AGC	p.G538S		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	538	Fibronectin type-III 2.										0						TAAGATTTGCCAGGCTGAAGA	0.403													49	116					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121957874	121957874	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121957874G>A	uc003idq.1	-	4	1779	c.1252C>T	c.(1252-1254)CTC>TTC	p.L418F		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	418											0						AGTCGAACGAGGTATTTAGCT	0.423													66	160					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121958002	121958002	+	Missense_Mutation	SNP	G	A	A	rs143734180	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121958002G>A	uc003idq.1	-	4	1651	c.1124C>T	c.(1123-1125)ACC>ATC	p.T375I		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	375											0						AATAAAGAAGGTGACTTTTTG	0.418													44	119					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121958050	121958050	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121958050C>T	uc003idq.1	-	4	1603	c.1076G>A	c.(1075-1077)GGA>GAA	p.G359E		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	359											0						AAACTTTGCTCCCTTCCTTTT	0.423													43	99					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121958354	121958354	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121958354G>A	uc003idq.1	-	4	1299	c.772C>T	c.(772-774)CCT>TCT	p.P258S		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	258											0						TTATCAGAAGGAAATCCAAAG	0.468													23	44					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121958704	121958704	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:121958704G>A	uc003idq.1	-	4	949	c.422C>T	c.(421-423)TCC>TTC	p.S141F		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	141	Poly-Ser.										0						ACCGGATGGGGAACTAGACGA	0.413													40	95					0	0	1	0	0
TNIP3	79931	broad.mit.edu	37	4	122075732	122075732	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122075732C>T	uc010ing.2	-	5	662	c.466G>A	c.(466-468)GAA>AAA	p.E156K	TNIP3_uc010inh.2_Missense_Mutation_p.E156K|TNIP3_uc011cgj.1_Missense_Mutation_p.E214K|TNIP3_uc010ini.2_Missense_Mutation_p.E156K	NM_024873	NP_079149	Q96KP6	TNIP3_HUMAN	TNFAIP3 interacting protein 3	156	Potential.									ovary(1)	1						ATTTCACATTCGTAATGTTCC	0.358													29	73					0	0	1	0	0
QRFPR	84109	broad.mit.edu	37	4	122250491	122250491	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122250491G>A	uc010inj.1	-	6	1653	c.1274C>T	c.(1273-1275)TCT>TTT	p.S425F	QRFPR_uc010ink.1_RNA|QRFPR_uc003ids.2_3'UTR	NM_198179	NP_937822	Q96P65	QRFPR_HUMAN	G protein-coupled receptor 103	425	Cytoplasmic (Potential).					plasma membrane	neuropeptide Y receptor activity				0						GTCTAAAGGAGAATTCTCAGC	0.363													25	109					0	0	1	0	0
QRFPR	84109	broad.mit.edu	37	4	122250756	122250756	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122250756C>T	uc010inj.1	-	6	1388	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	QRFPR_uc010ink.1_RNA|QRFPR_uc003ids.2_3'UTR	NM_198179	NP_937822	Q96P65	QRFPR_HUMAN	G protein-coupled receptor 103	337	Cytoplasmic (Potential).					plasma membrane	neuropeptide Y receptor activity				0						TTGAAGTTTTCATTCATAAAT	0.323													13	46					0	0	1	0	0
TMEM155	132332	broad.mit.edu	37	4	122682721	122682721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122682721G>A	uc003idx.1	-	5	743	c.184C>T	c.(184-186)CGC>TGC	p.R62C	TMEM155_uc003idy.1_Missense_Mutation_p.R62C	NM_152399	NP_689612	Q4W5P6	TM155_HUMAN	transmembrane protein 155 precursor	62						extracellular region					0						CCCTGCAAGCGAACCAAAAAC	0.378													21	59					0	0	1	0	0
BBS7	55212	broad.mit.edu	37	4	122776679	122776679	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122776679G>A	uc003ied.2	-	6	740	c.566C>T	c.(565-567)CCC>CTC	p.P189L	BBS7_uc003iee.1_Missense_Mutation_p.P189L	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	189					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						GACAGTAGGGGGTCCAGGAAC	0.348									Bardet-Biedl_syndrome				58	116					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122833219	122833219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122833219C>T	uc003ieg.2	-	5	1445	c.1371G>A	c.(1369-1371)ATG>ATA	p.M457I	TRPC3_uc010inr.2_Missense_Mutation_p.M329I|TRPC3_uc003ief.2_Missense_Mutation_p.M384I|TRPC3_uc011cgl.1_Missense_Mutation_p.M121I	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	372	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						CTACAAACTTCATAAAAGGGC	0.443													21	43					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122836061	122836061	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122836061C>T	uc003ieg.2	-	4	1289	c.1215G>A	c.(1213-1215)ACG>ACA	p.T405T	TRPC3_uc010inr.2_Intron|TRPC3_uc003ief.2_Silent_p.T332T|TRPC3_uc011cgl.1_Silent_p.T69T	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	320	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						CATACCAGATCGTCAAGAGCT	0.512													16	38					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122846208	122846208	+	Missense_Mutation	SNP	G	A	A	rs145694364		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122846208G>A	uc003ieg.2	-	3	1215	c.1141C>T	c.(1141-1143)CGT>TGT	p.R381C	TRPC3_uc010inr.2_Missense_Mutation_p.R308C|TRPC3_uc003ief.2_Missense_Mutation_p.R308C|TRPC3_uc011cgl.1_Missense_Mutation_p.R45C	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	296	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						AGTTTGACACGACTTAATGAA	0.428													34	161					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122853693	122853693	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122853693C>T	uc003ieg.2	-	2	794	c.720G>A	c.(718-720)GCG>GCA	p.A240A	TRPC3_uc010inr.2_Silent_p.A167A|TRPC3_uc003ief.2_Silent_p.A167A|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	155	Cytoplasmic (Potential).|ANK 4.				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GGCAGTGCGCCGCCAGGATGA	0.617													15	65					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122853810	122853810	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122853810C>T	uc003ieg.2	-	2	677	c.603G>A	c.(601-603)GCG>GCA	p.A201A	TRPC3_uc010inr.2_Silent_p.A128A|TRPC3_uc003ief.2_Silent_p.A128A|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	116	Cytoplasmic (Potential).|ANK 3.				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GCTTGCTGGCCGCGAAGCCAG	0.637													7	35					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122854132	122854132	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122854132G>A	uc003ieg.2	-	2	355	c.281C>T	c.(280-282)GCT>GTT	p.A94V	TRPC3_uc010inr.2_Missense_Mutation_p.A21V|TRPC3_uc003ief.2_Missense_Mutation_p.A21V|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	9	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GCCCCTGACAGCCTGGCGCCG	0.607													7	50					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122854194	122854194	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:122854194G>A	uc003ieg.2	-	2	293	c.219C>T	c.(217-219)TCC>TCT	p.S73S	TRPC3_uc010inr.2_5'UTR|TRPC3_uc003ief.2_5'UTR|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	Error:Variant_position_missing_in_Q13507_after_alignment					axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TTCCCTCCATGGACCTAATCA	0.547													6	46					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123145750	123145750	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123145750C>T	uc003ieh.2	+	21	2756	c.2711C>T	c.(2710-2712)CCT>CTT	p.P904L	KIAA1109_uc003iei.1_Missense_Mutation_p.P657L|KIAA1109_uc010ins.1_Missense_Mutation_p.P247L|KIAA1109_uc003iej.1_Missense_Mutation_p.P289L	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	904					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GAAGGTCTTCCTTTGGGAAGC	0.493													20	48					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123193527	123193527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123193527C>T	uc003ieh.2	+	46	8458	c.8413C>T	c.(8413-8415)CAT>TAT	p.H2805Y	KIAA1109_uc003iel.1_Missense_Mutation_p.H740Y|KIAA1109_uc003iek.2_Missense_Mutation_p.H1424Y	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2805					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GAAGAGGATCCATGGCAGTTT	0.363													18	56					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123249380	123249380	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123249380C>T	uc003ieh.2	+	64	11162	c.11117C>T	c.(11116-11118)TCA>TTA	p.S3706L	KIAA1109_uc003iem.2_Missense_Mutation_p.S97L	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3706					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GGAGGCTTTTCACCAGGCATT	0.443													48	107					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123283252	123283252	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123283252C>T	uc003ieh.2	+	84	14913	c.14868C>T	c.(14866-14868)GGC>GGT	p.G4956G	KIAA1109_uc003iem.2_Silent_p.G1312G	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4956					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AAAAATTGGGCTTTCATCATG	0.353													29	166					0	0	1	0	0
ADAD1	132612	broad.mit.edu	37	4	123301256	123301256	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123301256C>T	uc003ieo.2	+	3	264	c.32C>T	c.(31-33)TCG>TTG	p.S11L	ADAD1_uc003iep.2_Missense_Mutation_p.S11L|ADAD1_uc003ieq.2_5'UTR	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	11					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TTTCAGAGTTCGCAGGTCCCC	0.433													16	43					0	0	1	0	0
ADAD1	132612	broad.mit.edu	37	4	123301371	123301371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123301371G>A	uc003ieo.2	+	3	379	c.147G>A	c.(145-147)ATG>ATA	p.M49I	ADAD1_uc003iep.2_Missense_Mutation_p.M49I|ADAD1_uc003ieq.2_Missense_Mutation_p.M31I	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	49					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TGTCCAAGATGGCATCCAAGG	0.453													34	58					0	0	1	0	0
ADAD1	132612	broad.mit.edu	37	4	123302227	123302227	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123302227G>A	uc003ieo.2	+	4	485	c.253G>A	c.(253-255)GAA>AAA	p.E85K	ADAD1_uc003iep.2_Missense_Mutation_p.E85K|ADAD1_uc003ieq.2_Missense_Mutation_p.E67K	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	85					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						AATACCTAAGGAATTTATAAT	0.368													33	84					0	0	1	0	0
ADAD1	132612	broad.mit.edu	37	4	123333775	123333775	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123333775G>A	uc003ieo.2	+	10	1292	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	ADAD1_uc003iep.2_Missense_Mutation_p.E343K|ADAD1_uc003ieq.2_Missense_Mutation_p.E336K	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	354	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TGAAGCCAATGAAGAACTCTG	0.358													17	175					0	0	1	0	0
IL2	3558	broad.mit.edu	37	4	123374864	123374864	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123374864C>T	uc003ier.2	-	3	406	c.351_splice	c.e3+1	p.K117_splice		NM_000586	NP_000577	P60568	IL2_HUMAN	interleukin 2 precursor						anti-apoptosis|cell adhesion|cell-cell signaling|immune response|natural killer cell activation|negative regulation of B cell apoptosis|positive regulation of activated T cell proliferation|positive regulation of B cell proliferation|positive regulation of cell growth|positive regulation of interleukin-17 production|positive regulation of tyrosine phosphorylation of Stat5 protein|T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-2 receptor binding|kinase activator activity			skin(1)	1				LUSC - Lung squamous cell carcinoma(721;0.185)		TAATGCCTTACCTTTAGTTCC	0.338			T	TNFRSF17	intestinal T-cell lymphoma								22	104					0	0	1	0	0
IL2	3558	broad.mit.edu	37	4	123374954	123374954	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123374954C>T	uc003ier.2	-	3	317	c.262G>A	c.(262-264)GAA>AAA	p.E88K		NM_000586	NP_000577	P60568	IL2_HUMAN	interleukin 2 precursor	88					anti-apoptosis|cell adhesion|cell-cell signaling|immune response|natural killer cell activation|negative regulation of B cell apoptosis|positive regulation of activated T cell proliferation|positive regulation of B cell proliferation|positive regulation of cell growth|positive regulation of interleukin-17 production|positive regulation of tyrosine phosphorylation of Stat5 protein|T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-2 receptor binding|kinase activator activity			skin(1)	1				LUSC - Lung squamous cell carcinoma(721;0.185)		TTTAGCACTTCCTCCAGAGGT	0.368			T	TNFRSF17	intestinal T-cell lymphoma								39	112					0	0	1	0	0
BBS12	166379	broad.mit.edu	37	4	123664511	123664511	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123664511C>T	uc003ieu.2	+	2	1657	c.1464C>T	c.(1462-1464)ATC>ATT	p.I488I		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	488					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						ACAACAGAATCGCAATCTTAT	0.438									Bardet-Biedl_syndrome				15	88					0	0	1	0	0
BBS12	166379	broad.mit.edu	37	4	123664559	123664559	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:123664559C>T	uc003ieu.2	+	2	1705	c.1512C>T	c.(1510-1512)CTC>CTT	p.L504L		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	504					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						CGGCCGTGCTCACTAACCCAG	0.408									Bardet-Biedl_syndrome				31	97					0	0	1	0	0
SPRY1	10252	broad.mit.edu	37	4	124322981	124322981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:124322981G>A	uc003ifa.2	+	2	423	c.235G>A	c.(235-237)GAA>AAA	p.E79K	SPRY1_uc003ifb.2_Missense_Mutation_p.E79K	NM_199327	NP_955359	O43609	SPY1_HUMAN	sprouty homolog 1, antagonist of FGF signaling	79					epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|lamellipodium|plasma membrane				skin(2)|ovary(1)	3						AAGGACTCATGAAATCATACC	0.478													37	96					0	0	1	0	0
SPRY1	10252	broad.mit.edu	37	4	124323283	124323283	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:124323283C>T	uc003ifa.2	+	2	725	c.537C>T	c.(535-537)TTC>TTT	p.F179F	SPRY1_uc003ifb.2_Silent_p.F179F	NM_199327	NP_955359	O43609	SPY1_HUMAN	sprouty homolog 1, antagonist of FGF signaling	179					epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|lamellipodium|plasma membrane				skin(2)|ovary(1)	3						AGCACAAGTTCATTTGTGAAC	0.527													34	71					0	0	1	0	0
ANKRD50	57182	broad.mit.edu	37	4	125590235	125590235	+	Silent	SNP	G	A	A	rs138487103		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:125590235G>A	uc003ifg.3	-	3	4463	c.4197C>T	c.(4195-4197)TCC>TCT	p.S1399S	ANKRD50_uc011cgo.1_Silent_p.S1220S|ANKRD50_uc010inw.2_Silent_p.S1399S	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	1399										central_nervous_system(1)	1						CTGTCTCTGAGGAAGGGTATC	0.413													28	68					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126240404	126240404	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126240404T>A	uc003ifj.3	+	1	2838	c.2838T>A	c.(2836-2838)AAT>AAA	p.N946K		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	946	Cadherin 9.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ATGAAAAGAATGGCACTATTA	0.488													18	43					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126240774	126240774	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126240774G>A	uc003ifj.3	+	1	3208	c.3208G>A	c.(3208-3210)GTT>ATT	p.V1070I		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1070	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGTTTTAATGGTTGTTGCTTC	0.373													68	172					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126240849	126240849	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126240849G>A	uc003ifj.3	+	1	3283	c.3283G>A	c.(3283-3285)GAT>AAT	p.D1095N		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1095	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGATGTAAATGATAACAGACC	0.383													72	177					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126241007	126241007	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126241007G>A	uc003ifj.3	+	1	3441	c.3441G>A	c.(3439-3441)GAG>GAA	p.E1147E		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1147	Cadherin 11.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGATTTTGAGTTGCATGCCA	0.448													64	150					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126241172	126241172	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126241172T>G	uc003ifj.3	+	1	3606	c.3606T>G	c.(3604-3606)GAT>GAG	p.D1202E		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1202	Cadherin 11.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ACATGAAGGATATAAATGATA	0.418													22	64					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126241329	126241329	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126241329G>A	uc003ifj.3	+	1	3763	c.3763G>A	c.(3763-3765)GAA>AAA	p.E1255K		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1255	Cadherin 12.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGGAAATGAAGAAAGACAGTT	0.373													11	49					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126242399	126242399	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126242399G>A	uc003ifj.3	+	1	4833	c.4833G>A	c.(4831-4833)AGG>AGA	p.R1611R		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1611	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTGAAAGGAGGAAATCGACCA	0.438													42	122					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126328049	126328049	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126328049C>T	uc003ifj.3	+	3	5322	c.5322C>T	c.(5320-5322)CTC>CTT	p.L1774L	FAT4_uc011cgp.1_Silent_p.L72L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1774	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAAATGCTCTCGTCACATACA	0.433													31	104					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126328089	126328089	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126328089C>T	uc003ifj.3	+	3	5362	c.5362C>T	c.(5362-5364)CGC>TGC	p.R1788C	FAT4_uc011cgp.1_Missense_Mutation_p.R86C	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1788	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGATAGTTTTCGCATCGACCC	0.463													50	92					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126328133	126328133	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126328133G>A	uc003ifj.3	+	3	5406	c.5406G>A	c.(5404-5406)TTG>TTA	p.L1802L	FAT4_uc011cgp.1_Silent_p.L100L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1802	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCAGGCGGTTGGACAGGGAAC	0.468													56	131					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126370219	126370219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126370219C>T	uc003ifj.3	+	9	8048	c.8048C>T	c.(8047-8049)TCC>TTC	p.S2683F	FAT4_uc011cgp.1_Missense_Mutation_p.S981F|FAT4_uc003ifi.1_Missense_Mutation_p.S161F	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2683	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAAAACCTTTCCCCTCGAAAA	0.353													73	174					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126370417	126370417	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126370417G>A	uc003ifj.3	+	9	8246	c.8246G>A	c.(8245-8247)GGG>GAG	p.G2749E	FAT4_uc011cgp.1_Missense_Mutation_p.G1047E|FAT4_uc003ifi.1_Missense_Mutation_p.G227E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2749	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TCAGACAAAGGGTCCCCGTCT	0.373													44	99					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126371800	126371800	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126371800G>A	uc003ifj.3	+	9	9629	c.9629G>A	c.(9628-9630)GGA>GAA	p.G3210E	FAT4_uc011cgp.1_Missense_Mutation_p.G1508E|FAT4_uc003ifi.1_Missense_Mutation_p.G688E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3210	Cadherin 31.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GCCCCAAGTGGAACAACAGTT	0.408													44	89					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126372173	126372173	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126372173C>T	uc003ifj.3	+	9	10002	c.10002C>T	c.(10000-10002)CAC>CAT	p.H3334H	FAT4_uc011cgp.1_Silent_p.H1632H|FAT4_uc003ifi.1_Silent_p.H812H	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3334	Cadherin 32.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGGAGGTACACTATTTGATTT	0.378													28	142					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126372580	126372580	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126372580G>A	uc003ifj.3	+	9	10409	c.10409G>A	c.(10408-10410)CGA>CAA	p.R3470Q	FAT4_uc011cgp.1_Missense_Mutation_p.R1768Q|FAT4_uc003ifi.1_Missense_Mutation_p.R948Q	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3470	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAATTAGATCGAGAAACCCTT	0.443													52	118					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126372625	126372625	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126372625C>T	uc003ifj.3	+	9	10454	c.10454C>T	c.(10453-10455)TCA>TTA	p.S3485L	FAT4_uc011cgp.1_Missense_Mutation_p.S1783L|FAT4_uc003ifi.1_Missense_Mutation_p.S963L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3485	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GCTGTTGATTCAGGGACCCCC	0.458													59	146					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126373317	126373317	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126373317C>T	uc003ifj.3	+	9	11146	c.11146C>T	c.(11146-11148)CGT>TGT	p.R3716C	FAT4_uc011cgp.1_Missense_Mutation_p.R2014C|FAT4_uc003ifi.1_Missense_Mutation_p.R1194C	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3716	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CATCTTACTTCGTCTCGGCGT	0.468													16	166					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126373565	126373565	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126373565G>A	uc003ifj.3	+	9	11394	c.11394G>A	c.(11392-11394)GTG>GTA	p.V3798V	FAT4_uc011cgp.1_Silent_p.V2096V|FAT4_uc003ifi.1_Silent_p.V1276V	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3798	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAGTAAAGGTGGAATCTGTGG	0.483													11	54					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126398344	126398344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126398344G>A	uc003ifj.3	+	13	12328	c.12328G>A	c.(12328-12330)GGA>AGA	p.G4110R	FAT4_uc011cgp.1_Missense_Mutation_p.G2373R|FAT4_uc003ifi.1_Missense_Mutation_p.G1588R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4110	Laminin G-like 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGTTACAGTTGGAGGTATCAG	0.353													57	121					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126398443	126398443	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126398443C>T	uc003ifj.3	+	13	12427	c.12427C>T	c.(12427-12429)CCT>TCT	p.P4143S	FAT4_uc011cgp.1_Missense_Mutation_p.P2406S|FAT4_uc003ifi.1_Missense_Mutation_p.P1621S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4143	Laminin G-like 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAATGGAAGGCCTCTGGAACC	0.413													52	139					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126400967	126400967	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126400967C>T	uc003ifj.3	+	14	12545	c.12545C>T	c.(12544-12546)TCA>TTA	p.S4182L	FAT4_uc011cgp.1_Intron|FAT4_uc003ifi.1_Missense_Mutation_p.S1660L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4182	EGF-like 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GATTACTGGTCATGGCAGCAG	0.428													17	34					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126411082	126411082	+	Missense_Mutation	SNP	A	T	T	rs139260545	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126411082A>T	uc003ifj.3	+	17	13105	c.13105A>T	c.(13105-13107)ATG>TTG	p.M4369L	FAT4_uc011cgp.1_Missense_Mutation_p.M2610L|FAT4_uc003ifi.1_Missense_Mutation_p.M1846L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4369	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CATTGCTTCTATGTGGTATGG	0.438													65	172					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126411151	126411151	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126411151C>T	uc003ifj.3	+	17	13174	c.13174C>T	c.(13174-13176)CCC>TCC	p.P4392S	FAT4_uc011cgp.1_Missense_Mutation_p.P2633S|FAT4_uc003ifi.1_Missense_Mutation_p.P1869S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4392	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAAAACAGATCCCTCAGTGAA	0.512													104	243					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126411529	126411529	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126411529C>T	uc003ifj.3	+	17	13552	c.13552C>T	c.(13552-13554)CTC>TTC	p.L4518F	FAT4_uc011cgp.1_Missense_Mutation_p.L2759F|FAT4_uc003ifi.1_Missense_Mutation_p.L1995F	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4518	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CGTCTTGGCCCTCCTGGTCCT	0.557													21	45					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126412156	126412156	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:126412156G>A	uc003ifj.3	+	17	14179	c.14179G>A	c.(14179-14181)GAT>AAT	p.D4727N	FAT4_uc011cgp.1_Missense_Mutation_p.D2968N|FAT4_uc003ifi.1_Missense_Mutation_p.D2204N	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4727	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TCCTATAAGGGATGGTAATAC	0.493													35	91					0	0	1	0	0
INTU	27152	broad.mit.edu	37	4	128564722	128564722	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:128564722C>T	uc003ifk.1	+	2	263	c.193C>T	c.(193-195)CTG>TTG	p.L65L	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	65										ovary(1)	1						AAATGGAGAGCTGTTTTATTT	0.388													81	222					0	0	1	0	0
INTU	27152	broad.mit.edu	37	4	128595285	128595285	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:128595285C>T	uc003ifk.1	+	6	1168	c.1098C>T	c.(1096-1098)TCC>TCT	p.S366S	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	366										ovary(1)	1						TTAGTTCATCCCTCCTTTTAA	0.303													11	46					0	0	1	0	0
INTU	27152	broad.mit.edu	37	4	128595288	128595288	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:128595288C>T	uc003ifk.1	+	6	1171	c.1101C>T	c.(1099-1101)CTC>CTT	p.L367L	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	367										ovary(1)	1						GTTCATCCCTCCTTTTAAATG	0.303													11	49					0	0	1	0	0
INTU	27152	broad.mit.edu	37	4	128608858	128608858	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:128608858C>T	uc003ifk.1	+	8	1355	c.1285C>T	c.(1285-1287)CCT>TCT	p.P429S	INTU_uc011cgq.1_Intron	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	429										ovary(1)	1						TGAGAATGTTCCTCGTTTGGA	0.438													31	96					0	0	1	0	0
SCLT1	132320	broad.mit.edu	37	4	129873956	129873956	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:129873956G>A	uc003igp.2	-	14	1692	c.1186C>T	c.(1186-1188)CGA>TGA	p.R396*	SCLT1_uc003ign.2_Nonsense_Mutation_p.R60*|SCLT1_uc003igo.2_5'UTR|SCLT1_uc003igq.2_Intron|SCLT1_uc010iob.1_Intron	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	396	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						TCTGTTAATCGAGAAATTTGT	0.259													37	104					0	0	1	0	0
C4orf33	132321	broad.mit.edu	37	4	130023817	130023817	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:130023817C>T	uc003igu.3	+	2	416	c.52C>T	c.(52-54)CCC>TCC	p.P18S	C4orf33_uc010ioc.1_Missense_Mutation_p.P18S|C4orf33_uc010iod.2_Missense_Mutation_p.P18S	NM_173487	NP_775758	Q8N1A6	CD033_HUMAN	hypothetical protein LOC132321	18										upper_aerodigestive_tract(1)	1						GAAGCATGAGCCCGTATTTAT	0.398													20	83					0	0	1	0	0
C4orf33	132321	broad.mit.edu	37	4	130023819	130023819	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:130023819C>T	uc003igu.3	+	2	418	c.54C>T	c.(52-54)CCC>CCT	p.P18P	C4orf33_uc010ioc.1_Silent_p.P18P|C4orf33_uc010iod.2_Silent_p.P18P	NM_173487	NP_775758	Q8N1A6	CD033_HUMAN	hypothetical protein LOC132321	18										upper_aerodigestive_tract(1)	1						AGCATGAGCCCGTATTTATCA	0.403													27	78					0	0	1	0	0
PCDH10	57575	broad.mit.edu	37	4	134072297	134072298	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:134072297_134072298CC>TT	uc003iha.2	+	1	1828_1829	c.1002_1003CC>TT	c.(1000-1005)GGCCCC>GGTTCC	p.P335S	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.P335S	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	335	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		AGGACCTGGGCCCCAACGCCGT	0.599													20	121					0	0	1	0	0
PCDH10	57575	broad.mit.edu	37	4	134073281	134073281	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:134073281C>T	uc003iha.2	+	1	2812	c.1986C>T	c.(1984-1986)GAC>GAT	p.D662D	PCDH10_uc003igz.2_Silent_p.D662D	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	662	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		AGGTGCGCGACCATGGGCAGC	0.607													6	36					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138442346	138442346	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138442346G>A	uc003ihe.3	-	4	3632	c.3245C>T	c.(3244-3246)TCT>TTT	p.S1082F	PCDH18_uc003ihf.3_Missense_Mutation_p.S1074F|PCDH18_uc011cgz.1_Missense_Mutation_p.S293F|PCDH18_uc003ihg.3_Missense_Mutation_p.S861F|PCDH18_uc011cha.1_Missense_Mutation_p.S262F	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	1082	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CCATTTTGAAGAAGGCTGCAC	0.512													15	32					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138451045	138451045	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138451045G>A	uc003ihe.3	-	1	2585	c.2198C>T	c.(2197-2199)TCC>TTC	p.S733F	PCDH18_uc003ihf.3_Missense_Mutation_p.S726F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.S513F|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	733	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GCAGTTATAGGATCTAGTGTC	0.438													18	59					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138451179	138451179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138451179C>T	uc003ihe.3	-	1	2451	c.2064G>A	c.(2062-2064)ATG>ATA	p.M688I	PCDH18_uc003ihf.3_Missense_Mutation_p.M681I|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.M468I|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	688	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TTACTGAAGTCATTGCTGTAC	0.408													70	170					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138451832	138451832	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138451832C>T	uc003ihe.3	-	1	1798	c.1411G>A	c.(1411-1413)GAA>AAA	p.E471K	PCDH18_uc003ihf.3_Missense_Mutation_p.E464K|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.E251K|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	471	Extracellular (Potential).|Cadherin 5.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ATTACAAATTCATATCGGCTT	0.423													66	185					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138451910	138451910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138451910G>A	uc003ihe.3	-	1	1720	c.1333C>T	c.(1333-1335)CTC>TTC	p.L445F	PCDH18_uc003ihf.3_Missense_Mutation_p.L438F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.L225F|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	445	Cadherin 4.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ACTGTAGAGAGACTGGGTGTC	0.363													53	124					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138451962	138451962	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138451962C>T	uc003ihe.3	-	1	1668	c.1281G>A	c.(1279-1281)AAG>AAA	p.K427K	PCDH18_uc003ihf.3_Silent_p.K420K|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.K207K|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	427	Cadherin 4.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ACTCAGATCTCTTTTCTCTAT	0.353													44	111					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452406	138452406	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138452406C>T	uc003ihe.3	-	1	1224	c.837G>A	c.(835-837)GGG>GGA	p.G279G	PCDH18_uc003ihf.3_Silent_p.G272G|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.G59G|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	279	Cadherin 3.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ATACAATTTTCCCATTAGCGC	0.398													27	79					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452929	138452929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138452929G>A	uc003ihe.3	-	1	701	c.314C>T	c.(313-315)TCC>TTC	p.S105F	PCDH18_uc003ihf.3_Missense_Mutation_p.S98F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	105	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					AAACTCTATGGAACAGTTCAA	0.413													65	174					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138453020	138453020	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138453020G>A	uc003ihe.3	-	1	610	c.223C>T	c.(223-225)CCT>TCT	p.P75S	PCDH18_uc003ihf.3_Missense_Mutation_p.P68S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	75	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ACAAGTAGAGGAGAATTTCCC	0.418													56	133					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138453098	138453099	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:138453098_138453099CT>TC	uc003ihe.3	-	1	531_532	c.144_145AG>GA	c.(142-147)TCAGAG>TCGAAG	p.E49K	PCDH18_uc003ihf.3_Missense_Mutation_p.E42K|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	49	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GCCACATCCTCTGATAGTCTTG	0.411													34	87					0	0	1	0	0
SLC7A11	23657	broad.mit.edu	37	4	139163150	139163150	+	Missense_Mutation	SNP	G	A	A	rs140307668		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:139163150G>A	uc011chb.1	-	1	354	c.74C>T	c.(73-75)CCT>CTT	p.P25L		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	25	Cytoplasmic (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	GCCCAGGGAAGGCAGCCTCCC	0.507													20	58					0	0	1	0	0
ELF2	1998	broad.mit.edu	37	4	139988877	139988877	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:139988877G>A	uc003ihp.1	-	6	744	c.538C>T	c.(538-540)CCT>TCT	p.P180S	ELF2_uc003ihm.1_Missense_Mutation_p.P132S|ELF2_uc003ihn.1_Missense_Mutation_p.P120S|ELF2_uc003iho.1_Intron|ELF2_uc010ioh.2_Missense_Mutation_p.P120S	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	192					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					CCTAACTCAGGAGACCCATTG	0.363													43	99					0	0	1	0	0
SETD7	80854	broad.mit.edu	37	4	140439176	140439176	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:140439176G>A	uc003ihw.2	-	7	1069	c.783C>T	c.(781-783)GCC>GCT	p.A261A		NM_030648	NP_085151	Q8WTS6	SETD7_HUMAN	SET domain-containing protein 7	261	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	histone-lysine N-methyltransferase activity|p53 binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.156)					TCCCATTAAGGGCCCAGTCCC	0.488													8	33					0	0	1	0	0
MGST2	4258	broad.mit.edu	37	4	140616381	140616381	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:140616381C>T	uc003ihy.2	+	3	441	c.189C>T	c.(187-189)TTC>TTT	p.F63F	MGST2_uc010ioi.1_RNA	NM_002413	NP_002404	Q99735	MGST2_HUMAN	microsomal glutathione S-transferase 2	63	Helical; (Potential).				glutathione biosynthetic process|leukotriene biosynthetic process|leukotriene production involved in inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane|plasma membrane	enzyme activator activity|glutathione peroxidase activity|glutathione transferase activity|leukotriene-C4 synthase activity			ovary(1)	1	all_hematologic(180;0.162)				Glutathione(DB00143)	ATCCTATATTCATAATTACAT	0.318													12	64					0	0	1	0	0
MAML3	55534	broad.mit.edu	37	4	140811108	140811108	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:140811108C>T	uc003ihz.1	-	2	2234	c.1482G>A	c.(1480-1482)CAG>CAA	p.Q494Q	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	494	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					gctgctgctgctgctgctgct	0.274													4	38					0	0	1	0	0
CLGN	1047	broad.mit.edu	37	4	141310388	141310388	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141310388C>T	uc011chi.1	-	16	2041	c.1823G>A	c.(1822-1824)CGA>CAA	p.R608Q	CLGN_uc003iii.2_Missense_Mutation_p.R608Q	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	608	Cytoplasmic (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					TTAGTCCTTTCGTACTCTTCT	0.373													30	68					0	0	1	0	0
CLGN	1047	broad.mit.edu	37	4	141315179	141315179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141315179C>T	uc011chi.1	-	12	1384	c.1166G>A	c.(1165-1167)CGA>CAA	p.R389Q	CLGN_uc003iii.2_Missense_Mutation_p.R389Q	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	389	Lumenal (Potential).|2-4.				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					AGGAATTTTTCGAGGACTCCA	0.343													18	47					0	0	1	0	0
CLGN	1047	broad.mit.edu	37	4	141334096	141334096	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141334096G>A	uc011chi.1	-	3	355	c.137C>T	c.(136-138)TCC>TTC	p.S46F	CLGN_uc003iii.2_Missense_Mutation_p.S46F	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	46	Lumenal (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					TACCTCTGAGGAAAGTTCACT	0.318													17	41					0	0	1	0	0
UCP1	7350	broad.mit.edu	37	4	141484541	141484541	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141484541G>A	uc011chj.1	-	3	533	c.457C>T	c.(457-459)CGC>TGC	p.R153C	UCP1_uc011chk.1_Missense_Mutation_p.R152C	NM_021833	NP_068605	P25874	UCP1_HUMAN	uncoupling protein 1	153	Solcar 2.				brown fat cell differentiation|cellular lipid metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	all_hematologic(180;0.162)					CCCGTGTAGCGAGGTTTGATT	0.463													47	86					0	0	1	0	0
TBC1D9	23158	broad.mit.edu	37	4	141543929	141543929	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141543929G>T	uc010ioj.2	-	21	3493	c.3221C>A	c.(3220-3222)CCT>CAT	p.P1074H		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	1074						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CTCCTTTGCAGGCTGGGCCAC	0.657													7	24					1.06961e-07	1.07224e-07	1	1	0
TBC1D9	23158	broad.mit.edu	37	4	141583073	141583073	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141583073G>A	uc010ioj.2	-	10	2049	c.1777C>T	c.(1777-1779)CGA>TGA	p.R593*		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	593	Rab-GAP TBC.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TTGGGATTTCGAAAAGCATAA	0.398													13	28					0	0	1	0	0
TBC1D9	23158	broad.mit.edu	37	4	141598235	141598235	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141598235T>A	uc010ioj.2	-	6	1144	c.872A>T	c.(871-873)AAG>ATG	p.K291M		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	291						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TCTCTCACTCTTTGCCCTGGC	0.423													46	95					0	0	1	0	0
TBC1D9	23158	broad.mit.edu	37	4	141600150	141600150	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141600150C>T	uc010ioj.2	-	5	1069	c.797G>A	c.(796-798)CGA>CAA	p.R266Q		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	266						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				GGGCAGGGATCGATCTTGTTC	0.418													71	150					0	0	1	0	0
TBC1D9	23158	broad.mit.edu	37	4	141600242	141600242	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141600242G>A	uc010ioj.2	-	5	977	c.705C>T	c.(703-705)TTC>TTT	p.F235F		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	235						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TGATGTTGAGGAATACAGAGA	0.478													58	157					0	0	1	0	0
RNF150	57484	broad.mit.edu	37	4	141888811	141888811	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141888811C>T	uc003iio.1	-	2	1355	c.701G>A	c.(700-702)AGG>AAG	p.R234K	RNF150_uc010iok.1_Intron|RNF150_uc003iip.1_Missense_Mutation_p.R234K	NM_020724	NP_065775	Q9ULK6	RN150_HUMAN	ring finger protein 150 precursor	234	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1	all_hematologic(180;0.162)					ATATCGAAACCTCTGGATGTA	0.378													30	66					0	0	1	0	0
RNF150	57484	broad.mit.edu	37	4	141888927	141888927	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:141888927G>A	uc003iio.1	-	2	1239	c.585C>T	c.(583-585)ATC>ATT	p.I195I	RNF150_uc010iok.1_Silent_p.I195I|RNF150_uc003iip.1_Silent_p.I195I	NM_020724	NP_065775	Q9ULK6	RN150_HUMAN	ring finger protein 150 precursor	195	Extracellular (Potential).					integral to membrane	zinc ion binding			ovary(1)	1	all_hematologic(180;0.162)					TCCGGGTTCCGATGGTGATGT	0.478													55	162					0	0	1	0	0
USP38	84640	broad.mit.edu	37	4	144133528	144133528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:144133528C>T	uc003ijb.2	+	8	2089	c.1555C>T	c.(1555-1557)CCC>TCC	p.P519S	USP38_uc003ija.3_Missense_Mutation_p.P519S|USP38_uc003ijc.2_RNA	NM_032557	NP_115946	Q8NB14	UBP38_HUMAN	ubiquitin specific peptidase 38	519					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_hematologic(180;0.158)					ATGGTTTACTCCCAGATCACA	0.378													23	93					0	0	1	0	0
GAB1	2549	broad.mit.edu	37	4	144359486	144359486	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:144359486C>T	uc003ije.2	+	4	1287	c.928C>T	c.(928-930)CCT>TCT	p.P310S	GAB1_uc003ijd.2_Missense_Mutation_p.P310S|GAB1_uc011chq.1_Missense_Mutation_p.P207S	NM_002039	NP_002030	Q13480	GAB1_HUMAN	GRB2-associated binding protein 1 isoform b	310					cell proliferation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			breast(2)|lung(1)|skin(1)	4	all_hematologic(180;0.158)					TTATGACATTCCTCCAACACC	0.413													31	84					0	0	1	0	0
GAB1	2549	broad.mit.edu	37	4	144359624	144359624	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:144359624C>T	uc003ije.2	+	4	1425	c.1066C>T	c.(1066-1068)CCT>TCT	p.P356S	GAB1_uc003ijd.2_Missense_Mutation_p.P356S|GAB1_uc011chq.1_Missense_Mutation_p.P253S	NM_002039	NP_002030	Q13480	GAB1_HUMAN	GRB2-associated binding protein 1 isoform b	356					cell proliferation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			breast(2)|lung(1)|skin(1)	4	all_hematologic(180;0.158)					TGACCGATCTCCTGTGGAAAC	0.498													27	88					0	0	1	0	0
GYPA	2993	broad.mit.edu	37	4	145038021	145038021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:145038021G>A	uc003ijo.3	-	5	459	c.343C>T	c.(343-345)CGC>TGC	p.R115C	GYPA_uc003ijn.2_Intron|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Missense_Mutation_p.R82C|GYPA_uc003ijp.3_Missense_Mutation_p.R83C|GYPA_uc010ioq.2_Missense_Mutation_p.R102C|GYPA_uc010ior.2_Missense_Mutation_p.R50C|GYPA_uc010ios.1_RNA	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	115	Cytoplasmic.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					ATCAGTCGGCGAATACCGTAA	0.368													41	97					0	0	1	0	0
GYPA	2993	broad.mit.edu	37	4	145039905	145039905	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:145039905C>T	uc003ijo.3	-	4	349	c.233G>A	c.(232-234)GGA>GAA	p.G78E	GYPA_uc003ijn.2_Missense_Mutation_p.G78E|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Missense_Mutation_p.G45E|GYPA_uc003ijp.3_Missense_Mutation_p.G46E|GYPA_uc010ioq.2_Intron|GYPA_uc010ior.2_Missense_Mutation_p.G13E|GYPA_uc010ios.1_Intron	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	78	Extracellular.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					TACCCTTTCTCCTATAAAGCA	0.318													26	74					0	0	1	0	0
HHIP	64399	broad.mit.edu	37	4	145567885	145567885	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:145567885G>A	uc003ijs.1	+	1	713	c.58G>A	c.(58-60)GAA>AAA	p.E20K	uc003ijq.1_5'Flank|HHIP_uc003ijr.1_Missense_Mutation_p.E20K	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	20						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		GGGCTTCTTTGAAGGAGATGC	0.597													21	84					0	0	1	0	0
HHIP	64399	broad.mit.edu	37	4	145627710	145627710	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:145627710C>T	uc003ijs.1	+	5	1514	c.859C>T	c.(859-861)CTC>TTC	p.L287F		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	287						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		ACTGCTAAGCCTCGCATTCCA	0.413													16	26					0	0	1	0	0
HHIP	64399	broad.mit.edu	37	4	145627780	145627780	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:145627780G>A	uc003ijs.1	+	5	1584	c.929G>A	c.(928-930)TGG>TAG	p.W310*		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	310						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		CAAGAACGGTGGGCTATCGGG	0.433													16	35					0	0	1	0	0
HHIP	64399	broad.mit.edu	37	4	145629432	145629432	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:145629432G>A	uc003ijs.1	+	7	1925	c.1270G>A	c.(1270-1272)GTG>ATG	p.V424M		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	424						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		GCCCCCCGAAGTGTTTGCTCA	0.532													16	69					0	0	1	0	0
ABCE1	6059	broad.mit.edu	37	4	146029175	146029175	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:146029175C>T	uc003ijx.2	+	4	638	c.198C>T	c.(196-198)CCC>CCT	p.P66P	ABCE1_uc003ijy.2_Silent_p.P66P|ABCE1_uc010iot.2_RNA	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1	66	4Fe-4S ferredoxin-type 2.				interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					AGAAATGCCCCTTTGGCGCCT	0.294													19	44					0	0	1	0	0
ZNF827	152485	broad.mit.edu	37	4	146807044	146807044	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:146807044G>A	uc003ikn.2	-	4	1581	c.1533C>T	c.(1531-1533)AGC>AGT	p.S511S	ZNF827_uc003ikm.2_Silent_p.S511S|ZNF827_uc010iox.2_Silent_p.S161S	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	511					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CCCCTCCCTGGCTAGTCCTCT	0.602													22	54					0	0	1	0	0
ZNF827	152485	broad.mit.edu	37	4	146807307	146807307	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:146807307G>A	uc003ikn.2	-	4	1318	c.1270C>T	c.(1270-1272)CAT>TAT	p.H424Y	ZNF827_uc003ikm.2_Missense_Mutation_p.H424Y|ZNF827_uc010iox.2_Missense_Mutation_p.H74Y	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	424	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TGGTGCTGATGAACCTGACGG	0.502													7	17					0	0	1	0	0
SLC10A7	84068	broad.mit.edu	37	4	147227087	147227087	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:147227087G>A	uc010ioz.2	-	7	800	c.546C>T	c.(544-546)ATC>ATT	p.I182I	SLC10A7_uc003ikr.2_Silent_p.I182I|SLC10A7_uc010ipa.2_Silent_p.I169I|SLC10A7_uc003iks.2_RNA	NM_001029998	NP_001025169	Q0GE19	NTCP7_HUMAN	solute carrier family 10 (sodium/bile acid	182	Helical; (Potential).					integral to membrane	bile acid:sodium symporter activity				0	all_hematologic(180;0.151)					CCTGTCCAATGATGAGAGGAA	0.358													9	26					0	0	1	0	0
POU4F2	5458	broad.mit.edu	37	4	147561322	147561322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:147561322C>T	uc003ikv.2	+	2	840	c.592C>T	c.(592-594)CCC>TCC	p.P198S		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	198					estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					GCACCTGAGTCCCGGGCTGGC	0.592													4	10					0	0	1	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148968136	148968136	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:148968136C>T	uc003ilf.2	+	20	1961	c.1961C>T	c.(1960-1962)CCT>CTT	p.P654L	ARHGAP10_uc003ilg.2_Missense_Mutation_p.P303L|ARHGAP10_uc003ilh.2_Missense_Mutation_p.P235L|ARHGAP10_uc003ili.2_Missense_Mutation_p.P87L	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	654					apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		GTCCCTGGGCCTCCTGGACCA	0.562													25	61					0	0	1	0	0
NR3C2	4306	broad.mit.edu	37	4	149002610	149002610	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:149002610C>T	uc003ilj.3	-	9	3174	c.2840G>A	c.(2839-2841)CGA>CAA	p.R947Q	NR3C2_uc003ilk.3_Missense_Mutation_p.R830Q|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	947	Steroid-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	ATGGGACTCTCGGAAGGTGTA	0.602													21	44					0	0	1	0	0
NR3C2	4306	broad.mit.edu	37	4	149073664	149073664	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:149073664C>T	uc003ilj.3	-	6	2800	c.2466G>A	c.(2464-2466)ACG>ACA	p.T822T	NR3C2_uc003ilk.3_Silent_p.T705T|NR3C2_uc010iph.2_Intron	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	822	Steroid-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	ATTGGCTGTTCGTATGTTTGT	0.363													27	73					0	0	1	0	0
NR3C2	4306	broad.mit.edu	37	4	149075934	149075934	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:149075934G>A	uc003ilj.3	-	5	2467	c.2133C>T	c.(2131-2133)ATC>ATT	p.I711I	NR3C2_uc003ilk.3_Intron|NR3C2_uc010iph.2_Intron	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	711	Hinge.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	TTGCAGGAGCGATGTACGTTG	0.478													45	102					0	0	1	0	0
NR3C2	4306	broad.mit.edu	37	4	149356757	149356757	+	Missense_Mutation	SNP	G	A	A	rs72645628	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:149356757G>A	uc003ilj.3	-	2	1590	c.1256C>T	c.(1255-1257)TCG>TTG	p.S419L	NR3C2_uc003ilk.3_Missense_Mutation_p.S419L|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	419	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	TGAAGAATCCGAATTTATTTT	0.393													24	107					0	0	1	0	0
DCLK2	166614	broad.mit.edu	37	4	151153862	151153862	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:151153862C>T	uc003ilm.3	+	10	1548	c.1448C>T	c.(1447-1449)TCG>TTG	p.S483L	DCLK2_uc003iln.3_Missense_Mutation_p.S482L|DCLK2_uc003ilo.3_Missense_Mutation_p.S500L|DCLK2_uc003ilp.3_RNA	NM_001040260	NP_001035350	Q8N568	DCLK2_HUMAN	doublecortin-like kinase 2 isoform a	483	Protein kinase.				intracellular signal transduction	cytoplasm|cytoskeleton	ATP binding|protein serine/threonine kinase activity			ovary(3)	3	all_hematologic(180;0.151)					GCAATTACTTCGTCGACCAAG	0.448													45	210					0	0	1	0	0
DCLK2	166614	broad.mit.edu	37	4	151177266	151177266	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:151177266C>T	uc003ilm.3	+	16	2268	c.2168C>T	c.(2167-2169)CCC>CTC	p.P723L	DCLK2_uc003iln.3_Missense_Mutation_p.P722L|DCLK2_uc003ilo.3_Missense_Mutation_p.P740L|DCLK2_uc003ilp.3_RNA	NM_001040260	NP_001035350	Q8N568	DCLK2_HUMAN	doublecortin-like kinase 2 isoform a	723	Pro-rich.				intracellular signal transduction	cytoplasm|cytoskeleton	ATP binding|protein serine/threonine kinase activity			ovary(3)	3	all_hematologic(180;0.151)					CCAGTTCCTCCCTCAGTGGAG	0.647													4	31					0	0	1	0	0
LRBA	987	broad.mit.edu	37	4	151509257	151509257	+	Silent	SNP	G	A	A	rs146901365		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:151509257G>A	uc010ipj.2	-	41	6780	c.6306C>T	c.(6304-6306)TCC>TCT	p.S2102S	LRBA_uc003ilt.3_Silent_p.S750S|LRBA_uc003ilu.3_Silent_p.S2091S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2102						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					AATAGAGTTCGGAGGAGGTGA	0.468													20	199					0	0	1	0	0
LRBA	987	broad.mit.edu	37	4	151729515	151729515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:151729515G>A	uc010ipj.2	-	32	5815	c.5341C>T	c.(5341-5343)CCA>TCA	p.P1781S	LRBA_uc003ilt.3_Missense_Mutation_p.P440S|LRBA_uc003ilu.3_Missense_Mutation_p.P1781S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1781						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TCAACTGTTGGAACTGAGGGC	0.294													33	69					0	0	1	0	0
LRBA	987	broad.mit.edu	37	4	151835361	151835361	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:151835361C>T	uc010ipj.2	-	9	1621	c.1147G>A	c.(1147-1149)GGC>AGC	p.G383S	LRBA_uc003ilu.3_Missense_Mutation_p.G383S|LRBA_uc010ipk.1_Missense_Mutation_p.G302S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	383						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TATCCCAGGCCCAACTGATAA	0.353													36	156					0	0	1	0	0
TMEM154	201799	broad.mit.edu	37	4	153564299	153564299	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:153564299G>A	uc003imw.1	-	5	525	c.419C>T	c.(418-420)TCT>TTT	p.S140F		NM_152680	NP_689893	Q6P9G4	TM154_HUMAN	transmembrane protein 154 precursor	140	Cytoplasmic (Potential).					integral to membrane					0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				TTCCATAACAGAGGGTGTATC	0.338													19	81					0	0	1	0	0
TIGD4	201798	broad.mit.edu	37	4	153691754	153691754	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:153691754G>A	uc003imy.2	-	2	1185	c.403C>T	c.(403-405)CGT>TGT	p.R135C		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	135	HTH CENPB-type.|H-T-H motif (By similarity).				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					GATTTAAAACGATCCAGCCAA	0.413													72	59					0	0	1	0	0
ARFIP1	27236	broad.mit.edu	37	4	153791994	153791994	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:153791994C>T	uc003imz.2	+	4	568	c.292C>T	c.(292-294)CCT>TCT	p.P98S	ARFIP1_uc003inb.2_Intron|ARFIP1_uc003ina.2_Intron|ARFIP1_uc003inc.2_Missense_Mutation_p.P98S|ARFIP1_uc011cij.1_Intron	NM_001025595	NP_001020766	P53367	ARFP1_HUMAN	ADP-ribosylation factor interacting protein 1	98					intracellular protein transport|regulation of protein secretion	cytosol|Golgi membrane				ovary(1)	1	all_hematologic(180;0.093)					TTTAATTGTTCCTGCAGGTAT	0.433													28	42					0	0	1	0	0
FHDC1	85462	broad.mit.edu	37	4	153864301	153864301	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:153864301C>T	uc003inf.2	+	1	167	c.92C>T	c.(91-93)CCT>CTT	p.P31L		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	31					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					CAGAcacctcctccagcacct	0.368													15	62					0	0	1	0	0
FHDC1	85462	broad.mit.edu	37	4	153864657	153864657	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:153864657C>T	uc003inf.2	+	1	523	c.448C>T	c.(448-450)CCT>TCT	p.P150S		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	150	FH2.				actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					GTCTTCCCTTCCTAGGAGAGG	0.478													28	81					0	0	1	0	0
FHDC1	85462	broad.mit.edu	37	4	153884264	153884264	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:153884264C>T	uc003inf.2	+	7	1086	c.1011C>T	c.(1009-1011)CTC>CTT	p.L337L		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	337	FH2.				actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					GGATGAATCTCCTGCACTTTG	0.438													48	99					0	0	1	0	0
FHDC1	85462	broad.mit.edu	37	4	153897363	153897363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:153897363C>T	uc003inf.2	+	11	2995	c.2920C>T	c.(2920-2922)CCC>TCC	p.P974S		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	974					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					GAGGGACGTTCCCCTGCAGCC	0.662													16	32					0	0	1	0	0
FHDC1	85462	broad.mit.edu	37	4	153897566	153897566	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:153897566C>T	uc003inf.2	+	11	3198	c.3123C>T	c.(3121-3123)GCC>GCT	p.A1041A		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	1041					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					ACACAGTGGCCTCCTCCTCTC	0.637													35	93					0	0	1	0	0
TLR2	7097	broad.mit.edu	37	4	154624199	154624199	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:154624199C>T	uc003inq.2	+	3	359	c.140C>T	c.(139-141)CCC>CTC	p.P47L	TLR2_uc003inr.2_Missense_Mutation_p.P47L|TLR2_uc003ins.2_Missense_Mutation_p.P47L	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	47	Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				AACTCCATTCCCTCAGGGCTC	0.493													15	24					0	0	1	0	0
TLR2	7097	broad.mit.edu	37	4	154624622	154624622	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:154624622G>A	uc003inq.2	+	3	782	c.563G>A	c.(562-564)AGC>AAC	p.S188N	TLR2_uc003inr.2_Missense_Mutation_p.S188N|TLR2_uc003ins.2_Missense_Mutation_p.S188N	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	188	LRR 6.|Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				GATCTACAGAGCTATGAGCCA	0.368													38	48					0	0	1	0	0
TLR2	7097	broad.mit.edu	37	4	154625688	154625688	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:154625688C>T	uc003inq.2	+	3	1848	c.1629C>T	c.(1627-1629)TCC>TCT	p.S543S	TLR2_uc003inr.2_Silent_p.S543S|TLR2_uc003ins.2_Silent_p.S543S	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	543	Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				AATTCCTCTCCTTCACTCAGG	0.473													22	37					0	0	1	0	0
RNF175	285533	broad.mit.edu	37	4	154633721	154633721	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:154633721C>T	uc003int.2	-	8	1145	c.772G>A	c.(772-774)GAA>AAA	p.E258K		NM_173662	NP_775933	Q8N4F7	RN175_HUMAN	ring finger protein 175	258	RING-type; atypical.					integral to membrane	zinc ion binding			ovary(1)|pancreas(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				ATGCAGAATTCATGAAAGCTG	0.438													3	20					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155156135	155156135	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155156135G>A	uc003inw.2	-	25	8304	c.8304C>T	c.(8302-8304)ACC>ACT	p.T2768T		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2768					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CATGATCAGAGGTCGTCTGAG	0.418													45	98					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155156512	155156512	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155156512C>T	uc003inw.2	-	25	7927	c.7927G>A	c.(7927-7929)GAA>AAA	p.E2643K		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2643					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GTTTCTCCTTCCACAGAACAG	0.468													21	88					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155156834	155156834	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155156834G>A	uc003inw.2	-	25	7605	c.7605C>T	c.(7603-7605)TTC>TTT	p.F2535F		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2535					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AGCTGCTGGCGAACACTGCCA	0.388													29	69					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155157067	155157067	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155157067C>T	uc003inw.2	-	25	7372	c.7372G>A	c.(7372-7374)GGA>AGA	p.G2458R		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2458	Cadherin 22.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AGAATGACTCCATCAATACCA	0.378													43	108					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155161724	155161724	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155161724C>T	uc003inw.2	-	23	5959	c.5959G>A	c.(5959-5961)GAT>AAT	p.D1987N		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1987	Cadherin 17.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GGTGGATTATCATTGACATCC	0.393													20	45					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155250772	155250772	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155250772C>T	uc003inw.2	-	11	2456	c.2456G>A	c.(2455-2457)CGA>CAA	p.R819Q	DCHS2_uc003inx.2_Missense_Mutation_p.R1274Q	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	819	Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GGTGGCGTTTCGTGGTGGGGA	0.542													22	41					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155254414	155254414	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155254414G>A	uc003inw.2	-	9	1449	c.1449C>T	c.(1447-1449)ACC>ACT	p.T483T	DCHS2_uc003inx.2_Silent_p.T982T	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	483	Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TCTCATCCGAGGTCCTGAGGA	0.607													29	64					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155287468	155287468	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155287468G>A	uc003inw.2	-	5	588	c.588C>T	c.(586-588)ATC>ATT	p.I196I	DCHS2_uc003inx.2_Silent_p.I790I	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	196	Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GAACATTGATGATCTCGGTGC	0.483													16	44					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155287561	155287561	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155287561C>T	uc003inw.2	-	5	495	c.495G>A	c.(493-495)GTG>GTA	p.V165V	DCHS2_uc003inx.2_Silent_p.V759V	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	165	Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CCTCCAGGTCCACACGAACAA	0.468													10	17					0	0	1	0	0
FGB	2244	broad.mit.edu	37	4	155486959	155486959	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155486959G>A	uc003ioa.3	+	2	154	c.115_splice	c.e2-1	p.G39_splice	FGB_uc010ipu.1_RNA|FGB_uc003iob.3_Splice_Site_p.G36_splice|FGB_uc010ipv.2_Splice_Site_p.G36_splice|FGB_uc010ipw.2_Splice_Site_p.G36_splice|FGB_uc003ioc.3_Intron	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein						platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	ATTCCTTGTAGGGTTTCTTCA	0.463													12	29					0	0	1	0	0
FGB	2244	broad.mit.edu	37	4	155486985	155486985	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155486985G>A	uc003ioa.3	+	2	179	c.140G>A	c.(139-141)CGA>CAA	p.R47Q	FGB_uc010ipu.1_RNA|FGB_uc003iob.3_Missense_Mutation_p.R44Q|FGB_uc010ipv.2_Missense_Mutation_p.R44Q|FGB_uc010ipw.2_Missense_Mutation_p.R44Q|FGB_uc003ioc.3_Intron	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	47	Beta-chain polymerization, binding distal domain of another fibrin.		Missing (in New York-1).		platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	CGTGGTCATCGACCCCTTGAC	0.522													7	56					0	0	1	0	0
FGB	2244	broad.mit.edu	37	4	155488849	155488849	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155488849C>T	uc003ioa.3	+	4	634	c.595C>T	c.(595-597)CGT>TGT	p.R199C	FGB_uc003iob.3_Missense_Mutation_p.R196C|FGB_uc010ipv.2_Missense_Mutation_p.R137C|FGB_uc010ipw.2_Missense_Mutation_p.R196C|FGB_uc003ioc.3_5'UTR	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	199	Potential.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	TCGTGTGCTTCGTTCAATCCT	0.393													52	111					0	0	1	0	0
FGB	2244	broad.mit.edu	37	4	155491738	155491738	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155491738A>G	uc003ioa.3	+	8	1451	c.1412A>G	c.(1411-1413)AAG>AGG	p.K471R	FGB_uc003iob.3_3'UTR|FGB_uc010ipv.2_Missense_Mutation_p.K409R|FGB_uc010ipw.2_3'UTR|FGB_uc003ioc.3_Missense_Mutation_p.K252R	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	471	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	ATGAATTGGAAGGGGTCATGG	0.473													15	52					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155505308	155505308	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155505308G>A	uc003iod.1	-	6	2627	c.2569C>T	c.(2569-2571)CGC>TGC	p.R857C		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	857	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	ATTTTCATGCGAACAGCCCTG	0.473													13	133					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155506871	155506871	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155506871G>A	uc003iod.1	-	5	1768	c.1710C>T	c.(1708-1710)TTC>TTT	p.F570F	FGA_uc003ioe.1_Silent_p.F570F|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	570	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CACGGGAAGGGAATTCAGCTA	0.428													39	89					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155506994	155506994	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155506994G>A	uc003iod.1	-	5	1645	c.1587C>T	c.(1585-1587)TTC>TTT	p.F529F	FGA_uc003ioe.1_Silent_p.F529F|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	529	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AGAAACCTGGGAATGTTTTTC	0.473													26	70					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155507679	155507679	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155507679C>T	uc003iod.1	-	5	960	c.902G>A	c.(901-903)GGA>GAA	p.G301E	FGA_uc003ioe.1_Missense_Mutation_p.G301E|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	301	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	ACTTCCAGGTCCAGAGCTCCC	0.577													53	145					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155507732	155507732	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155507732C>T	uc003iod.1	-	5	907	c.849G>A	c.(847-849)ACG>ACA	p.T283T	FGA_uc003ioe.1_Silent_p.T283T|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	283	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	TGGGGCTTTCCGTCTCTGATC	0.542													53	133					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155507766	155507766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155507766C>T	uc003iod.1	-	5	873	c.815G>A	c.(814-816)GGA>GAA	p.G272E	FGA_uc003ioe.1_Missense_Mutation_p.G272E|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	272	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GGTGGAGCCTCCTCGAGTAAT	0.537													63	121					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155507941	155507941	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155507941G>A	uc003iod.1	-	5	698	c.640C>T	c.(640-642)CCC>TCC	p.P214S	FGA_uc003ioe.1_Missense_Mutation_p.P214S|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	214	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	TCTCTAGAGGGAAGTAAGTCT	0.453													40	85					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155508777	155508777	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155508777C>T	uc003iod.1	-	4	455	c.397G>A	c.(397-399)GAT>AAT	p.D133N	FGA_uc003ioe.1_Missense_Mutation_p.D133N|FGA_uc003iof.1_Missense_Mutation_p.D133N	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	133	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CTTCTCAGATCCTCTGACACT	0.388													30	87					0	0	1	0	0
FGG	2266	broad.mit.edu	37	4	155528041	155528041	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155528041G>A	uc003ioj.2	-	8	1086	c.945C>T	c.(943-945)GCC>GCT	p.A315A	FGG_uc003iog.2_Silent_p.A315A|FGG_uc003ioh.2_Silent_p.A323A|FGG_uc010ipx.2_Silent_p.A143A|FGG_uc010ipy.2_Silent_p.A26A|FGG_uc003ioi.2_Silent_p.A26A|FGG_uc003iok.2_Silent_p.A323A	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	315	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	AGCCATCAAAGGCATCTCCAG	0.463													56	95					0	0	1	0	0
FGG	2266	broad.mit.edu	37	4	155533028	155533028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155533028C>T	uc003ioj.2	-	4	471	c.330G>A	c.(328-330)TTG>TTA	p.L110L	FGG_uc003iog.2_Silent_p.L110L|FGG_uc003ioh.2_Silent_p.L110L|FGG_uc010ipx.2_5'UTR|FGG_uc010ipy.2_Intron|FGG_uc003ioi.2_5'Flank|FGG_uc003iok.2_Silent_p.L110L	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	110					platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	TCCTGGACTTCAAAGTAGCAG	0.318													9	31					0	0	1	0	0
RBM46	166863	broad.mit.edu	37	4	155719196	155719196	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155719196G>A	uc003ioo.2	+	3	558	c.385G>A	c.(385-387)GGG>AGG	p.G129R	RBM46_uc011cim.1_Missense_Mutation_p.G129R|RBM46_uc003iop.1_Missense_Mutation_p.G129R	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	129	RRM 1.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				AATTCGACCAGGGAAGTTTAT	0.328													28	72					0	0	1	0	0
RBM46	166863	broad.mit.edu	37	4	155719427	155719427	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155719427C>T	uc003ioo.2	+	3	789	c.616C>T	c.(616-618)CCA>TCA	p.P206S	RBM46_uc011cim.1_Missense_Mutation_p.P206S|RBM46_uc003iop.1_Missense_Mutation_p.P206S	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	206	RRM 2.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				GAAACTAATTCCAGGTAAACT	0.338													14	55					0	0	1	0	0
RBM46	166863	broad.mit.edu	37	4	155720128	155720128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155720128G>A	uc003ioo.2	+	4	987	c.814G>A	c.(814-816)GAT>AAT	p.D272N	RBM46_uc011cim.1_Missense_Mutation_p.D272N|RBM46_uc003iop.1_Missense_Mutation_p.D272N	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	272	RRM 3.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				GAAACTTAGAGATTATGCTTT	0.353													18	50					0	0	1	0	0
RBM46	166863	broad.mit.edu	37	4	155720365	155720365	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:155720365C>T	uc003ioo.2	+	4	1224	c.1051C>T	c.(1051-1053)CCT>TCT	p.P351S	RBM46_uc011cim.1_Missense_Mutation_p.P351S|RBM46_uc003iop.1_Missense_Mutation_p.P351S	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	351							nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				GCCAACTCTTCCTGCTCGTCT	0.423													37	73					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156135202	156135202	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156135202G>A	uc003ioq.2	+	2	606	c.111G>A	c.(109-111)GAG>GAA	p.E37E	NPY2R_uc003ior.2_Silent_p.E37E	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	37	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				CTGACCCTGAGCCAGAGCTTA	0.483													20	67					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156135673	156135673	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156135673C>T	uc003ioq.2	+	2	1077	c.582C>T	c.(580-582)ATC>ATT	p.I194I	NPY2R_uc003ior.2_Silent_p.I194I	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	194	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				TGATTGAGATCATCCCGGACT	0.517													48	102					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156135766	156135766	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156135766G>A	uc003ioq.2	+	2	1170	c.675G>A	c.(673-675)TTG>TTA	p.L225L	NPY2R_uc003ior.2_Silent_p.L225L	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	225	Helical; Name=5; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				CTTCCTTGTTGATCTTGTATG	0.443													29	114					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156135980	156135980	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156135980G>A	uc003ioq.2	+	2	1384	c.889G>A	c.(889-891)GTC>ATC	p.V297I	NPY2R_uc003ior.2_Missense_Mutation_p.V297I	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	297	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				TGACAGCCAGGTCCTGGACCT	0.522													13	55					0	0	1	0	0
MAP9	79884	broad.mit.edu	37	4	156276982	156276982	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156276982C>T	uc003ios.2	-	9	1440	c.1176G>A	c.(1174-1176)TCG>TCA	p.S392S	MAP9_uc011cin.1_Silent_p.S367S|MAP9_uc010iqa.1_Intron|MAP9_uc003iot.1_Silent_p.S391S	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	392					cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		AGGTAGTTGTCGATGGAGTTC	0.348													8	50					0	0	1	0	0
MAP9	79884	broad.mit.edu	37	4	156277015	156277015	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156277015C>T	uc003ios.2	-	9	1407	c.1143G>A	c.(1141-1143)TTG>TTA	p.L381L	MAP9_uc011cin.1_Silent_p.L356L|MAP9_uc010iqa.1_Intron|MAP9_uc003iot.1_Silent_p.L380L	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	381					cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		TAGATTTCTTCAAAAACTCAG	0.343													14	30					0	0	1	0	0
MAP9	79884	broad.mit.edu	37	4	156283289	156283289	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156283289G>A	uc003ios.2	-	6	977	c.713C>T	c.(712-714)TCA>TTA	p.S238L	MAP9_uc011cin.1_Missense_Mutation_p.S237L|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Missense_Mutation_p.S237L	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	238					cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		TGTTAAGCATGAATCCTGTTT	0.318													26	59					0	0	1	0	0
MAP9	79884	broad.mit.edu	37	4	156289882	156289882	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156289882C>T	uc003ios.2	-	5	828	c.564G>A	c.(562-564)ATG>ATA	p.M188I	MAP9_uc011cin.1_Missense_Mutation_p.M187I|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Missense_Mutation_p.M187I|MAP9_uc010iqb.1_Missense_Mutation_p.M115I	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	188	Potential.				cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		CCTTCTCCTCCATGTGACTTT	0.413													12	101					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156629387	156629387	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156629387G>A	uc003iov.2	+	6	854	c.318_splice	c.e6-1	p.R106_splice	GUCY1A3_uc003iou.2_Splice_Site_p.R106_splice|GUCY1A3_uc010iqc.2_Splice_Site_p.R106_splice|GUCY1A3_uc003iow.2_Splice_Site_p.R106_splice|GUCY1A3_uc010iqd.2_Splice_Site_p.R106_splice|GUCY1A3_uc003iox.2_Splice_Site_p.R106_splice|GUCY1A3_uc003ioz.2_Splice_Site|GUCY1A3_uc003ioy.2_Splice_Site_p.R106_splice|GUCY1A3_uc010iqe.2_Splice_Site|GUCY1A3_uc003ipa.2_Splice_Site|GUCY1A3_uc003ipb.2_Splice_Site_p.R106_splice	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A						blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		AATATTTCCAGGAAATCTTTG	0.254													27	47					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156631840	156631840	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156631840C>T	uc003iov.2	+	7	1059	c.523C>T	c.(523-525)CAT>TAT	p.H175Y	GUCY1A3_uc003iou.2_Missense_Mutation_p.H175Y|GUCY1A3_uc010iqc.2_Missense_Mutation_p.H175Y|GUCY1A3_uc003iow.2_Missense_Mutation_p.H175Y|GUCY1A3_uc010iqd.2_Missense_Mutation_p.H174Y|GUCY1A3_uc003iox.2_Missense_Mutation_p.H175Y|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Missense_Mutation_p.H175Y|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.H175Y	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	175				VIKESLGEEVFKICYEEDENILGVVGGTLKDFLNSFSTLLK QSSHCQEAGKRGR -> LSKNLLVKRFLKYVTRKMKTSLGW LEAPLKIFKQLQYPSETEQPLPRSRKKGQ (in Ref. 1).	blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		ACAGAGCAGCCATTGCCAAGA	0.433													29	57					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156631964	156631964	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156631964C>T	uc003iov.2	+	7	1183	c.647C>T	c.(646-648)CCC>CTC	p.P216L	GUCY1A3_uc003iou.2_Missense_Mutation_p.P216L|GUCY1A3_uc010iqc.2_Missense_Mutation_p.P216L|GUCY1A3_uc003iow.2_Missense_Mutation_p.P216L|GUCY1A3_uc010iqd.2_Missense_Mutation_p.P215L|GUCY1A3_uc003iox.2_Missense_Mutation_p.P216L|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Missense_Mutation_p.P216L|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.P216L	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	216					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CTGATTCTTCCCGGCATCATA	0.463													43	92					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156634394	156634394	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156634394G>A	uc003iov.2	+	8	1767	c.1231G>A	c.(1231-1233)GAT>AAT	p.D411N	GUCY1A3_uc010iqc.2_Missense_Mutation_p.D411N|GUCY1A3_uc003iow.2_Missense_Mutation_p.D411N|GUCY1A3_uc010iqd.2_Missense_Mutation_p.D410N|GUCY1A3_uc003iox.2_Missense_Mutation_p.D411N|GUCY1A3_uc003ioz.2_Missense_Mutation_p.D176N|GUCY1A3_uc003ioy.2_Missense_Mutation_p.D411N|GUCY1A3_uc010iqe.2_Missense_Mutation_p.D176N|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.D411N	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	411					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TGCACTGAGGGATGTGGTCTT	0.517													23	56					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156634495	156634495	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156634495G>A	uc003iov.2	+	8	1868	c.1332G>A	c.(1330-1332)GAG>GAA	p.E444E	GUCY1A3_uc010iqc.2_Silent_p.E444E|GUCY1A3_uc003iow.2_Silent_p.E444E|GUCY1A3_uc010iqd.2_Silent_p.E443E|GUCY1A3_uc003iox.2_Silent_p.E444E|GUCY1A3_uc003ioz.2_Silent_p.E209E|GUCY1A3_uc003ioy.2_Silent_p.E444E|GUCY1A3_uc010iqe.2_Silent_p.E209E|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Silent_p.E444E	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	444					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		AAGCCCTGGAGGAGGAGAAGA	0.527													26	75					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156638365	156638365	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156638365G>A	uc003iov.2	+	9	2163	c.1627G>A	c.(1627-1629)GAT>AAT	p.D543N	GUCY1A3_uc010iqc.2_Missense_Mutation_p.D543N|GUCY1A3_uc003iow.2_Missense_Mutation_p.D543N|GUCY1A3_uc010iqd.2_Missense_Mutation_p.D542N|GUCY1A3_uc003iox.2_Missense_Mutation_p.D543N|GUCY1A3_uc003ioz.2_Missense_Mutation_p.D308N|GUCY1A3_uc003ioy.2_Missense_Mutation_p.D543N|GUCY1A3_uc010iqe.2_Missense_Mutation_p.D308N|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.D543N	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	543	Guanylate cyclase.				blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CAAAGAGAGTGATACTCATGC	0.433													19	90					0	0	1	0	0
GUCY1B3	2983	broad.mit.edu	37	4	156725803	156725803	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156725803C>T	uc003ipc.2	+	12	1780	c.1613C>T	c.(1612-1614)CCT>CTT	p.P538L	GUCY1B3_uc011cio.1_Missense_Mutation_p.P560L|GUCY1B3_uc011cip.1_Missense_Mutation_p.P518L|GUCY1B3_uc003ipd.2_Missense_Mutation_p.P466L|GUCY1B3_uc010iqf.2_Missense_Mutation_p.P505L|GUCY1B3_uc010iqg.2_Missense_Mutation_p.P509L|GUCY1B3_uc011ciq.1_Missense_Mutation_p.P466L	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	538	Guanylate cyclase.				blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		CAGCGGATGCCTCGATACTGT	0.398													13	100					0	0	1	0	0
ACCN5	51802	broad.mit.edu	37	4	156757929	156757929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156757929G>A	uc003ipe.1	-	8	1194	c.1147C>T	c.(1147-1149)CCG>TCG	p.P383S		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	383	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		ATAGTGGCCGGGTATTCTATT	0.363													43	97					0	0	1	0	0
TDO2	6999	broad.mit.edu	37	4	156838606	156838606	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:156838606C>T	uc003ipf.1	+	10	1020	c.956C>T	c.(955-957)TCA>TTA	p.S319L		NM_005651	NP_005642	P48775	T23O_HUMAN	tryptophan 2,3-dioxygenase	319					tryptophan catabolic process to kynurenine	cytosol	tryptophan 2,3-dioxygenase activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		KIRC - Kidney renal clear cell carcinoma(143;0.0455)|Kidney(143;0.0568)|COAD - Colon adenocarcinoma(41;0.141)	L-Tryptophan(DB00150)	GACATAGATTCACTGATGACC	0.433													21	83					0	0	1	0	0
PDGFC	56034	broad.mit.edu	37	4	157689119	157689119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:157689119C>T	uc003iph.1	-	5	1218	c.727G>A	c.(727-729)GAG>AAG	p.E243K	PDGFC_uc003ipi.1_Missense_Mutation_p.E80K|PDGFC_uc011cis.1_Missense_Mutation_p.E80K|PDGFC_uc011cir.1_Missense_Mutation_p.E87K	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	243					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		CTTACCTCCTCTGTTAGAAGG	0.393													67	146					0	0	1	0	0
PDGFC	56034	broad.mit.edu	37	4	157771398	157771398	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:157771398C>T	uc003iph.1	-	2	780	c.289G>A	c.(289-291)GAA>AAA	p.E97K	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_Intron|PDGFC_uc011cir.1_5'UTR	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	97	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		TCTGGGTCTTCAAGCCCAAAT	0.348													19	57					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	157999191	157999191	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:157999191G>A	uc003ipj.2	+	2	217	c.15G>A	c.(13-15)TTG>TTA	p.L5L		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	5					nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	AGTTTTTATTGACAACTGCCT	0.313													7	43					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158074052	158074052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:158074052G>A	uc003ipj.2	+	9	1289	c.1087G>A	c.(1087-1089)GAA>AAA	p.E363K		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	363	Cytoplasmic (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	GGTTGAAGCTGAAAAAGCCAG	0.448													15	51					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158074137	158074137	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:158074137C>T	uc003ipj.2	+	9	1374	c.1172C>T	c.(1171-1173)ACT>ATT	p.T391I		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	391	Cytoplasmic (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	GGAACAGGGACTCCTGTTCAT	0.408													19	39					0	0	1	0	0
GRIA2	2891	broad.mit.edu	37	4	158254056	158254056	+	Missense_Mutation	SNP	G	A	A	rs142538282	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:158254056G>A	uc003ipm.3	+	7	1427	c.968G>A	c.(967-969)CGA>CAA	p.R323Q	GRIA2_uc011cit.1_Missense_Mutation_p.R276Q|GRIA2_uc003ipl.3_Missense_Mutation_p.R323Q|GRIA2_uc003ipk.3_Missense_Mutation_p.R276Q|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	323	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	GAAATCTCCCGAAGGGGGAAT	0.478													18	88					0	0	1	0	0
GRIA2	2891	broad.mit.edu	37	4	158257668	158257668	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:158257668T>A	uc003ipm.3	+	11	2072	c.1613T>A	c.(1612-1614)TTT>TAT	p.F538Y	GRIA2_uc011cit.1_Missense_Mutation_p.F491Y|GRIA2_uc003ipl.3_Missense_Mutation_p.F538Y|GRIA2_uc003ipk.3_Missense_Mutation_p.F491Y|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	538	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	GTGTTTTCCTTTCTTGATCCT	0.448													86	232					0	0	1	0	0
GRIA2	2891	broad.mit.edu	37	4	158284011	158284011	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:158284011G>A	uc003ipm.3	+	15	2926	c.2467G>A	c.(2467-2469)GGC>AGC	p.G823S	GRIA2_uc011cit.1_Missense_Mutation_p.G776S|GRIA2_uc003ipl.3_Missense_Mutation_p.G823S|GRIA2_uc003ipk.3_Missense_Mutation_p.G776S|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_3'UTR|GRIA2_uc011ciy.1_3'UTR|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	823	Helical; (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	CCTTGTCGGGGGCCTTGGTTT	0.453													15	99					0	0	1	0	0
FAM198B	51313	broad.mit.edu	37	4	159092037	159092037	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:159092037G>C	uc003ipp.3	-	2	943	c.491C>G	c.(490-492)CCT>CGT	p.P164R	uc003ipu.1_5'Flank|FAM198B_uc003ipq.3_Missense_Mutation_p.P164R|FAM198B_uc003ipr.3_Missense_Mutation_p.P164R|FAM198B_uc003ips.2_Missense_Mutation_p.P164R|uc003ipt.1_RNA	NM_016613	NP_057697	Q6UWH4	F198B_HUMAN	hypothetical protein LOC51313 isoform 2	164	Extracellular (Potential).					Golgi membrane|integral to membrane					0						AGCGTACCCAGGTGCTACAGC	0.632											OREG0016378	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	56					0	0	1	0	0
FAM198B	51313	broad.mit.edu	37	4	159092246	159092246	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:159092246C>T	uc003ipp.3	-	2	734	c.282G>A	c.(280-282)GAG>GAA	p.E94E	uc003ipu.1_5'Flank|FAM198B_uc003ipq.3_Silent_p.E94E|FAM198B_uc003ipr.3_Silent_p.E94E|FAM198B_uc003ips.2_Silent_p.E94E|uc003ipt.1_RNA	NM_016613	NP_057697	Q6UWH4	F198B_HUMAN	hypothetical protein LOC51313 isoform 2	94	Extracellular (Potential).					Golgi membrane|integral to membrane					0						TGCCCTGGGACTCTGGAGGGG	0.632													25	64					0	0	1	0	0
RXFP1	59350	broad.mit.edu	37	4	159514632	159514632	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:159514632G>A	uc003ipz.2	+	3	349	c.267G>A	c.(265-267)GAG>GAA	p.E89E	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_Silent_p.E8E|RXFP1_uc010iqo.2_Silent_p.E89E|RXFP1_uc011cjb.1_Silent_p.E8E|RXFP1_uc010iqk.2_5'UTR|RXFP1_uc011cjc.1_Silent_p.E8E|RXFP1_uc011cjd.1_Silent_p.E8E|RXFP1_uc010iql.2_5'UTR|RXFP1_uc011cje.1_Silent_p.E89E|RXFP1_uc010iqm.2_Intron|RXFP1_uc011cjf.1_Intron|RXFP1_uc010iqn.2_Silent_p.E8E	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	89	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		ATCCTTTTGAGGCAGAAACAC	0.313													5	47					0	0	1	0	0
RXFP1	59350	broad.mit.edu	37	4	159548022	159548022	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:159548022C>T	uc003ipz.2	+	10	888	c.806C>T	c.(805-807)TCC>TTC	p.S269F	RXFP1_uc010iqj.1_Missense_Mutation_p.S98F|RXFP1_uc011cja.1_Intron|RXFP1_uc010iqo.2_Missense_Mutation_p.S269F|RXFP1_uc011cjb.1_Missense_Mutation_p.S215F|RXFP1_uc010iqk.2_Missense_Mutation_p.S137F|RXFP1_uc011cjc.1_Missense_Mutation_p.S188F|RXFP1_uc011cjd.1_Missense_Mutation_p.S188F|RXFP1_uc010iql.2_Intron|RXFP1_uc011cje.1_Missense_Mutation_p.S296F|RXFP1_uc010iqm.2_Missense_Mutation_p.S236F|RXFP1_uc011cjf.1_Missense_Mutation_p.S139F|RXFP1_uc010iqn.2_Missense_Mutation_p.S215F	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	269	Extracellular (Potential).|LRR 5.					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		ACTTTTATTTCCTGCAGTAAT	0.269													10	38					0	0	1	0	0
RXFP1	59350	broad.mit.edu	37	4	159560422	159560422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:159560422G>A	uc003ipz.2	+	14	1136	c.1054G>A	c.(1054-1056)GGG>AGG	p.G352R	RXFP1_uc010iqj.1_Missense_Mutation_p.G181R|RXFP1_uc011cja.1_Missense_Mutation_p.G247R|RXFP1_uc010iqo.2_Missense_Mutation_p.G304R|RXFP1_uc011cjb.1_Missense_Mutation_p.G250R|RXFP1_uc010iqk.2_Missense_Mutation_p.G220R|RXFP1_uc011cjc.1_Missense_Mutation_p.G271R|RXFP1_uc011cjd.1_Missense_Mutation_p.G271R|RXFP1_uc010iql.2_Missense_Mutation_p.G196R|RXFP1_uc011cje.1_Missense_Mutation_p.G379R|RXFP1_uc010iqm.2_Missense_Mutation_p.G319R|RXFP1_uc011cjf.1_Missense_Mutation_p.G221R|RXFP1_uc010iqn.2_Missense_Mutation_p.G297R	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	352	Extracellular (Potential).|LRR 9.					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		CAGCCTAGAAGGGATTGAAAT	0.269													18	46					0	0	1	0	0
C4orf45	152940	broad.mit.edu	37	4	159836479	159836479	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:159836479C>T	uc003iqf.1	-	4	474	c.389G>A	c.(388-390)GGA>GAA	p.G130E	C4orf45_uc010iqt.1_RNA	NM_152543	NP_689756	Q96LM5	CD045_HUMAN	hypothetical protein LOC152940	130											0						ACTCTGTTTTCCTTGCATATC	0.433													8	22					0	0	1	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160274736	160274736	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:160274736C>T	uc003iqg.3	+	22	4016	c.3706C>T	c.(3706-3708)CGC>TGC	p.R1236C		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	1236					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		TCAGGGGGATCGCGCGTCACT	0.532													29	107					0	0	1	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160277257	160277257	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:160277257C>T	uc003iqg.3	+	23	4731	c.4421C>T	c.(4420-4422)TCT>TTT	p.S1474F		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	1474					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		CCGAACGAGTCTGACCCGCGC	0.537													15	33					0	0	1	0	0
FSTL5	56884	broad.mit.edu	37	4	162307203	162307203	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:162307203G>A	uc003iqh.2	-	16	2676	c.2240C>T	c.(2239-2241)TCC>TTC	p.S747F	FSTL5_uc003iqi.2_Missense_Mutation_p.S746F|FSTL5_uc010iqv.2_Missense_Mutation_p.S737F|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	747						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TTCAGTAAAGGATGGTTGAAA	0.413													25	64					0	0	1	0	0
NPY1R	4886	broad.mit.edu	37	4	164247039	164247039	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164247039G>A	uc003iqm.1	-	2	934	c.668C>T	c.(667-669)CCA>CTA	p.P223L	NPY1R_uc011cjj.1_5'UTR	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	223	Helical; Name=5; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AAAACAAAGTGGACCAAAATA	0.353													7	34					0	0	1	0	0
NPY1R	4886	broad.mit.edu	37	4	164247463	164247463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164247463G>A	uc003iqm.1	-	2	510	c.244C>T	c.(244-246)CTT>TTT	p.L82F	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	82	Helical; Name=2; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GAGAAGGAAAGGTTCACAATC	0.423													22	67					0	0	1	0	0
NPY5R	4889	broad.mit.edu	37	4	164271863	164271863	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164271863C>T	uc003iqn.2	+	4	620	c.438C>T	c.(436-438)CCC>CCT	p.P146P		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	146	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				TAAAACATCCCATATCTAATA	0.363													70	174					0	0	1	0	0
NPY5R	4889	broad.mit.edu	37	4	164272255	164272255	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164272255G>A	uc003iqn.2	+	4	1012	c.830G>A	c.(829-831)TGG>TAG	p.W277*		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	277	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				AGCCATAAATGGAGTTATTCA	0.398													28	79					0	0	1	0	0
NPY5R	4889	broad.mit.edu	37	4	164272587	164272587	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164272587C>T	uc003iqn.2	+	4	1344	c.1162C>T	c.(1162-1164)CAT>TAT	p.H388Y		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	388	Helical; Name=6; (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				ACACCTTTTCCATGTGGTAAC	0.343													39	91					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164393478	164393478	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164393478C>T	uc003iqp.3	-	1	1570	c.1409G>A	c.(1408-1410)GGA>GAA	p.G470E		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	470						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GAAGCACATTCCCTTGGTATT	0.468													45	113					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164393656	164393656	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164393656G>A	uc003iqp.3	-	1	1392	c.1231C>T	c.(1231-1233)CAA>TAA	p.Q411*		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	411						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ATATTGGCTTGAGAAATGGCT	0.498													18	32					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164394265	164394265	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164394265C>T	uc003iqp.3	-	1	783	c.622G>A	c.(622-624)GAA>AAA	p.E208K		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	208						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CCAAAGGCTTCACAGCAATTC	0.517													19	88					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164394440	164394441	+	Missense_Mutation	DNP	CC	TT	TT	rs147436359		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164394440_164394441CC>TT	uc003iqp.3	-	1	607_608	c.446_447GG>AA	c.(445-447)CGG>CAA	p.R149Q		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	149						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GGCAGAACACCCGGTAGCTGGC	0.53													19	86					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164394679	164394679	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164394679C>T	uc003iqp.3	-	1	369	c.208G>A	c.(208-210)GAC>AAC	p.D70N		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	70						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ATGAACCGGTCGTTGTCCGGG	0.552													9	31					0	0	1	0	0
MARCH1	55016	broad.mit.edu	37	4	164506928	164506928	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164506928C>T	uc003iqs.1	-	6	1373	c.396G>A	c.(394-396)ATG>ATA	p.M132I	MARCH1_uc003iqr.1_Missense_Mutation_p.M115I	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	132	RING-CH-type.				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GCTTGGTCTCCATTATGAAGT	0.483													35	80					0	0	1	0	0
MARCH1	55016	broad.mit.edu	37	4	164507045	164507045	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164507045G>A	uc003iqs.1	-	6	1256	c.279C>T	c.(277-279)CTC>CTT	p.L93L	MARCH1_uc003iqr.1_Silent_p.L76L	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	93	RING-CH-type.				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AGGGTGTGATGAGGGGGCTCT	0.537													16	44					0	0	1	0	0
MARCH1	55016	broad.mit.edu	37	4	164507064	164507064	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164507064C>T	uc003iqs.1	-	6	1237	c.260G>A	c.(259-261)GGG>GAG	p.G87E	MARCH1_uc003iqr.1_Missense_Mutation_p.G70E	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	87	RING-CH-type.				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CTCTTCATCCCCTTCGCAGTG	0.522													12	35					0	0	1	0	0
MARCH1	55016	broad.mit.edu	37	4	164507068	164507068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164507068C>T	uc003iqs.1	-	6	1233	c.256G>A	c.(256-258)GAA>AAA	p.E86K	MARCH1_uc003iqr.1_Missense_Mutation_p.E69K	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	86	RING-CH-type.				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TCATCCCCTTCGCAGTGACAG	0.527													19	27					0	0	1	0	0
MARCH1	55016	broad.mit.edu	37	4	164534538	164534538	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:164534538C>T	uc003iqs.1	-	5	1147	c.170G>A	c.(169-171)AGC>AAC	p.S57N	MARCH1_uc003iqr.1_Missense_Mutation_p.S40N	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	57	Responsible for low stability (By similarity).				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGTTGTTGGGCTGCTTGCCTG	0.403													37	84					0	0	1	0	0
ANP32C	23520	broad.mit.edu	37	4	165118245	165118245	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165118245C>T	uc011cjk.1	-	1	619	c.619G>A	c.(619-621)GAA>AAA	p.E207K	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	207	Asp/Glu-rich (highly acidic).										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		taaccttcttcatcctcctcg	0.06													12	27					0	0	1	0	0
ANP32C	23520	broad.mit.edu	37	4	165118395	165118395	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165118395C>T	uc011cjk.1	-	1	469	c.469G>A	c.(469-471)GAG>AAG	p.E157K	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	157	Asp/Glu-rich (highly acidic).										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		ACGTGGTCCTCAATATCTGAG	0.463													30	61					0	0	1	0	0
ANP32C	23520	broad.mit.edu	37	4	165118513	165118513	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165118513G>A	uc011cjk.1	-	1	351	c.351C>T	c.(349-351)TTC>TTT	p.F117F	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	117	LRR 4.										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		CCTCGCAATTGAAAAGGTCTA	0.438													59	134					0	0	1	0	0
ANP32C	23520	broad.mit.edu	37	4	165118669	165118669	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165118669C>T	uc011cjk.1	-	1	195	c.195G>A	c.(193-195)TTG>TTA	p.L65L	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	65	LRR 2.										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		CAAGCTTTCTCAACTTTAACT	0.413													20	183					0	0	1	0	0
TRIM61	391712	broad.mit.edu	37	4	165890967	165890967	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165890967C>T	uc003iqw.2	-	3	799	c.188G>A	c.(187-189)AGG>AAG	p.R63K		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	63						intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		TATAAATTTCCTTTCTGGACA	0.453													15	121					0	0	1	0	0
TRIM61	391712	broad.mit.edu	37	4	165891019	165891019	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165891019C>T	uc003iqw.2	-	3	747	c.136G>A	c.(136-138)GAT>AAT	p.D46N		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	46	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		TCATGTAGATCCTTCCAGGAC	0.463													27	116					0	0	1	0	0
TRIM60	166655	broad.mit.edu	37	4	165962195	165962195	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165962195G>A	uc003iqy.1	+	3	1141	c.971G>A	c.(970-972)CGA>CAA	p.R324Q	TRIM60_uc010iqx.1_Missense_Mutation_p.R324Q	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	324	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		AGAAAAAAACGAAACATTTGT	0.418													25	109					0	0	1	0	0
TRIM60	166655	broad.mit.edu	37	4	165962425	165962425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165962425C>T	uc003iqy.1	+	3	1371	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S	TRIM60_uc010iqx.1_Missense_Mutation_p.P401S	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	401	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		TGCGTCAGGTCCTAAGACAAC	0.428													62	111					0	0	1	0	0
TRIM60	166655	broad.mit.edu	37	4	165962504	165962504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165962504C>T	uc003iqy.1	+	3	1450	c.1280C>T	c.(1279-1281)TCC>TTC	p.S427F	TRIM60_uc010iqx.1_Missense_Mutation_p.S427F	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	427	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		GGTGATCTTTCCTTTTATAAT	0.378													36	81					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	165980452	165980452	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:165980452C>T	uc011cjl.1	+	1	153	c.153C>T	c.(151-153)TTC>TTT	p.F51F		NM_001105575	NP_001099045			tripartite motif-containing 75																		AGGAATTGTTCCCTTGCCCTG	0.532													4	18					0	0	1	0	0
CPE	1363	broad.mit.edu	37	4	166408671	166408671	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:166408671A>C	uc003irg.3	+	6	1332	c.1055A>C	c.(1054-1056)GAG>GCG	p.E352A		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	352					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCACCTGAAGAGACTCTGAAG	0.453													20	61					0	0	1	0	0
CPE	1363	broad.mit.edu	37	4	166408691	166408691	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:166408691G>A	uc003irg.3	+	6	1352	c.1075G>A	c.(1075-1077)GAG>AAG	p.E359K		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	359					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GACCTACTGGGAGGATAACAA	0.443													18	56					0	0	1	0	0
CPE	1363	broad.mit.edu	37	4	166418738	166418738	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:166418738G>A	uc003irg.3	+	9	1684	c.1407G>A	c.(1405-1407)ATG>ATA	p.M469I		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	469					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGTGGAAAATGATGTCAGAAA	0.289													24	56					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166924631	166924631	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:166924631G>A	uc003irh.1	+	6	1368	c.721G>A	c.(721-723)GAA>AAA	p.E241K	TLL1_uc011cjn.1_Missense_Mutation_p.E241K|TLL1_uc011cjo.1_Missense_Mutation_p.E65K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	241	Metalloprotease (By similarity).	By similarity.			cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TGTTGTTCATGAATTGGGTCA	0.443													36	96					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166964517	166964517	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:166964517G>A	uc003irh.1	+	12	2117	c.1470G>A	c.(1468-1470)TGG>TGA	p.W490*	TLL1_uc011cjn.1_Nonsense_Mutation_p.W490*|TLL1_uc011cjo.1_Nonsense_Mutation_p.W314*	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	490	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AATGTGTGTGGAAAATAACAG	0.433													61	152					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166976277	166976277	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:166976277G>A	uc003irh.1	+	13	2221	c.1574G>A	c.(1573-1575)GGA>GAA	p.G525E	TLL1_uc011cjn.1_Missense_Mutation_p.G548E|TLL1_uc011cjo.1_Missense_Mutation_p.G349E	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	525	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GTTAGAGATGGAACCAGTGAA	0.338													30	83					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166976311	166976311	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:166976311C>T	uc003irh.1	+	13	2255	c.1608C>T	c.(1606-1608)TTC>TTT	p.F536F	TLL1_uc011cjn.1_Silent_p.F559F|TLL1_uc011cjo.1_Silent_p.F360F	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	536	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TAGGGCGTTTCTGTGGTTATG	0.398													27	69					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	167012436	167012436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:167012436C>T	uc003irh.1	+	19	3246	c.2599C>T	c.(2599-2601)CGG>TGG	p.R867W	TLL1_uc011cjn.1_Missense_Mutation_p.R890W|TLL1_uc011cjo.1_Missense_Mutation_p.R691W	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	867	CUB 4.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AATGTTTGTTCGGTTTGTTTC	0.403													30	69					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	167020477	167020477	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:167020477C>T	uc003irh.1	+	20	3352	c.2705C>T	c.(2704-2706)TCA>TTA	p.S902L	TLL1_uc011cjn.1_Missense_Mutation_p.S925L|TLL1_uc011cjo.1_Missense_Mutation_p.S726L	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	902	CUB 5.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GATCTGTACTCACATGCTCAG	0.443													70	145					0	0	1	0	0
ANXA10	11199	broad.mit.edu	37	4	169049242	169049242	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169049242G>A	uc003irm.2	+	2	171	c.26G>A	c.(25-27)GGA>GAA	p.G9E		NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	9							calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		CAGGTGCAAGGAACCATCTTC	0.328													28	36					0	0	1	0	0
ANXA10	11199	broad.mit.edu	37	4	169049298	169049298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169049298G>A	uc003irm.2	+	2	227	c.82G>A	c.(82-84)GGA>AGA	p.G28R		NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	28	Annexin 1.						calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		AATGCTAGGAGGAGCACTCCA	0.368													5	54					0	0	1	0	0
ANXA10	11199	broad.mit.edu	37	4	169086465	169086465	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169086465G>A	uc003irm.2	+	6	613	c.468G>A	c.(466-468)ATG>ATA	p.M156I	ANXA10_uc003irn.2_Missense_Mutation_p.M28I	NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	156	Annexin 2.						calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		ATACTCTCATGAACTTGGTCC	0.323													46	72					0	0	1	0	0
ANXA10	11199	broad.mit.edu	37	4	169099050	169099050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169099050G>A	uc003irm.2	+	8	689	c.544G>A	c.(544-546)GAA>AAA	p.E182K	ANXA10_uc003irn.2_Missense_Mutation_p.E54K	NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	182	Annexin 3.						calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		GGTCCTATGGGAAGCCTGTCA	0.502													18	93					0	0	1	0	0
ANXA10	11199	broad.mit.edu	37	4	169108548	169108548	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169108548T>G	uc003irm.2	+	12	1083	c.938T>G	c.(937-939)CTG>CGG	p.L313R	ANXA10_uc003irn.2_Missense_Mutation_p.L185R	NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	313	Annexin 4.						calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		AAGAAAGCACTGCTTGCCATC	0.333													17	57					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169146730	169146730	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169146730G>A	uc003irp.2	-	34	4923	c.4631C>T	c.(4630-4632)TCC>TTC	p.S1544F	DDX60_uc003iro.2_Missense_Mutation_p.S15F	NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1544							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AGCCAGTTTGGAAACAATTCG	0.333													20	57					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169183279	169183279	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169183279C>T	uc003irp.2	-	24	3437	c.3145G>A	c.(3145-3147)GAA>AAA	p.E1049K		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1049							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		GGGCACAGTTCCTTGAAAACA	0.308													18	43					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169201675	169201675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169201675C>T	uc003irp.2	-	14	2081	c.1789G>A	c.(1789-1791)GAA>AAA	p.E597K		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	597							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTTTGCTCTTCCTTTTGTTCT	0.363													16	51					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169337945	169337945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169337945G>A	uc003irq.3	-	20	2835	c.2614C>T	c.(2614-2616)CAT>TAT	p.H872Y	DDX60L_uc003irr.1_Missense_Mutation_p.H872Y|DDX60L_uc003irs.1_Missense_Mutation_p.H567Y	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	872	DEAH box.|Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CCAAGATAATGGACCTAGTAA	0.328													14	57					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169362547	169362547	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169362547G>A	uc003irq.3	-	10	1456	c.1235C>T	c.(1234-1236)TCT>TTT	p.S412F	DDX60L_uc003irr.1_Missense_Mutation_p.S412F|DDX60L_uc003irs.1_Missense_Mutation_p.S139F	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	412							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CAGAGGAAAAGACTTTCCAAC	0.373													20	95					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169432679	169432679	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169432679G>A	uc011cjx.1	+	2	235	c.24G>A	c.(22-24)GAG>GAA	p.E8E	PALLD_uc003iru.2_Silent_p.E8E	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	8					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CCTCCCATGAGTCCTTCTATG	0.478									Pancreatic_Cancer_Familial_Clustering_of				26	71					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169432736	169432736	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169432736C>T	uc011cjx.1	+	2	292	c.81C>T	c.(79-81)TTC>TTT	p.F27F	PALLD_uc003iru.2_Silent_p.F27F	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	27					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CTGACTTCTTCCCGGGCCTTT	0.502									Pancreatic_Cancer_Familial_Clustering_of				18	69					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169432901	169432901	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169432901G>A	uc011cjx.1	+	2	457	c.246G>A	c.(244-246)AAG>AAA	p.K82K	PALLD_uc003iru.2_Silent_p.K82K	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	82					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CTTCCCATAAGGAGACCAAAT	0.483									Pancreatic_Cancer_Familial_Clustering_of				8	36					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169433294	169433294	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169433294C>T	uc011cjx.1	+	2	850	c.639C>T	c.(637-639)GCC>GCT	p.A213A	PALLD_uc003iru.2_Silent_p.A213A	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	213					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		AGCCGTCAGCCCTGCTGAGTG	0.552									Pancreatic_Cancer_Familial_Clustering_of				16	107					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169589405	169589405	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169589405G>A	uc011cjx.1	+	3	1184	c.973G>A	c.(973-975)GAC>AAC	p.D325N	PALLD_uc003iru.2_Missense_Mutation_p.D325N|PALLD_uc003irv.2_5'UTR	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	325	Ig-like C2-type 1.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		TGAGGGAGGGGACCTCCATAC	0.517									Pancreatic_Cancer_Familial_Clustering_of				33	99					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169589453	169589453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169589453C>T	uc011cjx.1	+	3	1232	c.1021C>T	c.(1021-1023)CGC>TGC	p.R341C	PALLD_uc003iru.2_Missense_Mutation_p.R341C|PALLD_uc003irv.2_5'UTR	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	341	Ig-like C2-type 1.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CGACACAGGTCGCTACACCTG	0.522									Pancreatic_Cancer_Familial_Clustering_of				11	92					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169632887	169632887	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169632887G>A	uc011cjx.1	+	10	1988	c.1777G>A	c.(1777-1779)GGC>AGC	p.G593S	PALLD_uc003iru.2_Missense_Mutation_p.G593S|PALLD_uc003irv.2_Missense_Mutation_p.G211S	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	593					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CCCTGAGTTAGGCCTGAGCAG	0.512									Pancreatic_Cancer_Familial_Clustering_of				26	42					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169812155	169812155	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169812155G>A	uc011cjx.1	+	11	2258	c.2047G>A	c.(2047-2049)GAC>AAC	p.D683N	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Missense_Mutation_p.D683N|PALLD_uc003irv.2_Missense_Mutation_p.D301N|PALLD_uc003irw.2_Missense_Mutation_p.D185N	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	907					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		TGTTATTCAAGACCTGGAACG	0.463									Pancreatic_Cancer_Familial_Clustering_of				27	58					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169819815	169819815	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169819815G>A	uc011cjx.1	+	14	2633	c.2422G>A	c.(2422-2424)GGA>AGA	p.G808R	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Missense_Mutation_p.G791R|PALLD_uc003irv.2_Missense_Mutation_p.G409R|PALLD_uc003irw.2_Missense_Mutation_p.G293R|PALLD_uc003irx.2_Missense_Mutation_p.G17R	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	1015	Ig-like C2-type 3.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GATCTTTGAGGGAATGCCAGT	0.433									Pancreatic_Cancer_Familial_Clustering_of				19	75					0	0	1	0	0
CBR4	84869	broad.mit.edu	37	4	169923281	169923281	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:169923281G>A	uc003iry.2	-	4	658	c.476C>T	c.(475-477)TCA>TTA	p.S159L	CBR4_uc011cjy.1_RNA|CBR4_uc003irz.1_Missense_Mutation_p.S159L	NM_032783	NP_116172	Q8N4T8	CBR4_HUMAN	carbonic reductase 4	159					fatty acid biosynthetic process|protein homotetramerization	mitochondrial matrix	NADPH binding|NADPH dehydrogenase (quinone) activity|protein binding|quinone binding				0		Prostate(90;0.00263)|Renal(120;0.0183)|Melanoma(52;0.123)		GBM - Glioblastoma multiforme(119;0.0321)		AAGAGCACGTGAAAATCCAAC	0.343													16	58					0	0	1	0	0
SH3RF1	57630	broad.mit.edu	37	4	170028273	170028273	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:170028273G>A	uc003isa.1	-	11	2558	c.2223C>T	c.(2221-2223)ACC>ACT	p.T741T		NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	741						Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		CCACTTCTAGGGTGGGCGATG	0.577													15	45					0	0	1	0	0
NEK1	4750	broad.mit.edu	37	4	170327882	170327882	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:170327882G>A	uc003isb.1	-	30	3647	c.3155C>T	c.(3154-3156)TCA>TTA	p.S1052L	NEK1_uc003isc.1_Missense_Mutation_p.S1008L|NEK1_uc003isd.1_Missense_Mutation_p.S1080L|NEK1_uc003ise.1_Missense_Mutation_p.S1036L|NEK1_uc003isf.1_Missense_Mutation_p.S983L	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	1052					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		ATCTGGAAGTGAACATGTCCT	0.313													23	41					0	0	1	0	0
NEK1	4750	broad.mit.edu	37	4	170498183	170498183	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:170498183G>A	uc003isb.1	-	11	1408	c.916C>T	c.(916-918)CAG>TAG	p.Q306*	NEK1_uc003isc.1_Nonsense_Mutation_p.Q306*|NEK1_uc003isd.1_Nonsense_Mutation_p.Q306*|NEK1_uc003ise.1_Nonsense_Mutation_p.Q306*|NEK1_uc003isf.1_Nonsense_Mutation_p.Q306*|NEK1_uc003isg.1_Nonsense_Mutation_p.Q227*	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	306					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		GTAATTTTCTGAGCAGGCATA	0.328													17	41					0	0	1	0	0
CLCN3	1182	broad.mit.edu	37	4	170618355	170618355	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:170618355C>T	uc003isi.2	+	9	1542	c.1033C>T	c.(1033-1035)CCT>TCT	p.P345S	CLCN3_uc003ish.2_Missense_Mutation_p.P345S|CLCN3_uc011cjz.1_Missense_Mutation_p.P328S|CLCN3_uc011cka.1_Missense_Mutation_p.P318S|CLCN3_uc003isj.1_Missense_Mutation_p.P318S	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	345					endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		CTATTATTTTCCTCTCAAAAC	0.294													35	64					0	0	1	0	0
MFAP3L	9848	broad.mit.edu	37	4	170912824	170912825	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:170912824_170912825GG>AA	uc003isp.3	-	3	1112_1113	c.934_935CC>TT	c.(934-936)CCT>TTT	p.P312F	MFAP3L_uc003isn.3_Missense_Mutation_p.P209F	NM_021647	NP_067679	O75121	MFA3L_HUMAN	microfibrillar-associated protein 3-like isoform	312	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0201)|LUSC - Lung squamous cell carcinoma(193;0.116)		AATTTGCTGAGGTTGCTCGTGC	0.554													5	48					0	0	1	0	0
AADAT	51166	broad.mit.edu	37	4	170990371	170990371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:170990371G>A	uc003isr.2	-	7	1073	c.731C>T	c.(730-732)CCA>CTA	p.P244L	AADAT_uc003iss.2_Missense_Mutation_p.P244L|AADAT_uc003ist.2_Missense_Mutation_p.P248L	NM_016228	NP_057312	Q8N5Z0	AADAT_HUMAN	kynurenine aminotransferase II	244					2-oxoglutarate metabolic process|biosynthetic process|glutamate metabolic process|lysine catabolic process	mitochondrial matrix	2-aminoadipate transaminase activity|kynurenine-oxoglutarate transaminase activity|protein homodimerization activity				0		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0355)|LUSC - Lung squamous cell carcinoma(193;0.118)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	AAGAAATGTTGGTACCCTGAA	0.388													23	36					0	0	1	0	0
GALNTL6	442117	broad.mit.edu	37	4	173873345	173873345	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:173873345C>T	uc003isv.2	+	10	2043	c.1307C>T	c.(1306-1308)GCT>GTT	p.A436V		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	436	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						TTCATGGCTGCTGTGGCCTGG	0.612													13	36					0	0	1	0	0
GALNTL6	442117	broad.mit.edu	37	4	173942648	173942648	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:173942648G>A	uc003isv.2	+	12	2246	c.1510G>A	c.(1510-1512)GAA>AAA	p.E504K		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	504	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding	p.?(1)		breast(2)|ovary(1)|skin(1)	4						TGGATGGAGAGAAGATATTCG	0.478													27	121					0	0	1	0	0
GALNT7	51809	broad.mit.edu	37	4	174169386	174169386	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:174169386C>T	uc003isz.3	+	2	465	c.382C>T	c.(382-384)CGC>TGC	p.R128C		NM_017423	NP_059119	Q86SF2	GALT7_HUMAN	polypeptide N-acetylgalactosaminyltransferase 7	128	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(1)	1		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;1.87e-18)|Epithelial(43;3.44e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-09)|STAD - Stomach adenocarcinoma(60;0.0019)|GBM - Glioblastoma multiforme(59;0.0119)|LUSC - Lung squamous cell carcinoma(193;0.0199)		TCCTGTGCTTCGCCCAGGGAT	0.512													32	61					0	0	1	0	0
GALNT7	51809	broad.mit.edu	37	4	174169415	174169415	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:174169415C>T	uc003isz.3	+	2	494	c.411C>T	c.(409-411)CCC>CCT	p.P137P		NM_017423	NP_059119	Q86SF2	GALT7_HUMAN	polypeptide N-acetylgalactosaminyltransferase 7	137	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(1)	1		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;1.87e-18)|Epithelial(43;3.44e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-09)|STAD - Stomach adenocarcinoma(60;0.0019)|GBM - Glioblastoma multiforme(59;0.0119)|LUSC - Lung squamous cell carcinoma(193;0.0199)		ACTTTGAACCCAAAGAACCTG	0.483													34	95					0	0	1	0	0
MORF4	10934	broad.mit.edu	37	4	174537195	174537195	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:174537195G>A	uc011cke.1	-	1	600	c.600C>T	c.(598-600)CTC>CTT	p.L200L		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		GAAGATAATTGAGTAATAAAG	0.428													42	84					0	0	1	0	0
MORF4	10934	broad.mit.edu	37	4	174537735	174537735	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:174537735C>T	uc011cke.1	-	1	60	c.60G>A	c.(58-60)GTG>GTA	p.V20V		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TTTTTGTTTTCACTTCAATAT	0.463													61	168					0	0	1	0	0
GLRA3	8001	broad.mit.edu	37	4	175598335	175598335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175598335G>A	uc003ity.1	-	7	1324	c.821C>T	c.(820-822)TCA>TTA	p.S274L	GLRA3_uc003itz.1_Missense_Mutation_p.S274L	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	274	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	GATCCAGAATGAAACCCAGGA	0.478													11	33					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175896748	175896749	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175896748_175896749CC>TT	uc003iuc.2	+	5	742_743	c.72_73CC>TT	c.(70-75)CACCCC>CATTCC	p.P25S	ADAM29_uc003iud.2_Missense_Mutation_p.P25S|ADAM29_uc010irr.2_Missense_Mutation_p.P25S|ADAM29_uc011cki.1_Missense_Mutation_p.P25S	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	25					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AGGATGAGCACCCCCAATATCA	0.51													19	56					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175896986	175896986	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175896986G>A	uc003iuc.2	+	5	980	c.310G>A	c.(310-312)GGT>AGT	p.G104S	ADAM29_uc003iud.2_Missense_Mutation_p.G104S|ADAM29_uc010irr.2_Missense_Mutation_p.G104S|ADAM29_uc011cki.1_Missense_Mutation_p.G104S	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	104					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CTACTATCATGGTTATGTGGA	0.438													21	51					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175896999	175896999	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175896999G>A	uc003iuc.2	+	5	993	c.323G>A	c.(322-324)GGG>GAG	p.G108E	ADAM29_uc003iud.2_Missense_Mutation_p.G108E|ADAM29_uc010irr.2_Missense_Mutation_p.G108E|ADAM29_uc011cki.1_Missense_Mutation_p.G108E	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	108					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TATGTGGAAGGGGACCCAGAA	0.453													12	61					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175897633	175897633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175897633G>A	uc003iuc.2	+	5	1627	c.957G>A	c.(955-957)ATG>ATA	p.M319I	ADAM29_uc003iud.2_Missense_Mutation_p.M319I|ADAM29_uc010irr.2_Missense_Mutation_p.M319I|ADAM29_uc011cki.1_Missense_Mutation_p.M319I	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	319	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TTACTTTCATGAACAAAACTT	0.403													67	178					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175897751	175897751	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175897751G>A	uc003iuc.2	+	5	1745	c.1075G>A	c.(1075-1077)GGC>AGC	p.G359S	ADAM29_uc003iud.2_Missense_Mutation_p.G359S|ADAM29_uc010irr.2_Missense_Mutation_p.G359S|ADAM29_uc011cki.1_Missense_Mutation_p.G359S	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	359	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AATGCATGAAGGCAACCCACC	0.373													47	111					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175897906	175897906	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175897906G>A	uc003iuc.2	+	5	1900	c.1230G>A	c.(1228-1230)GAG>GAA	p.E410E	ADAM29_uc003iud.2_Silent_p.E410E|ADAM29_uc010irr.2_Silent_p.E410E|ADAM29_uc011cki.1_Silent_p.E410E	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	410	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AAGGAGAAGAGTGTGACTGTG	0.428													32	107					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175897943	175897943	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175897943C>T	uc003iuc.2	+	5	1937	c.1267C>T	c.(1267-1269)CCC>TCC	p.P423S	ADAM29_uc003iud.2_Missense_Mutation_p.P423S|ADAM29_uc010irr.2_Missense_Mutation_p.P423S|ADAM29_uc011cki.1_Missense_Mutation_p.P423S	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	423	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TGCAAAAGATCCCTGCTGTCT	0.443													33	91					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175897995	175897995	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175897995G>A	uc003iuc.2	+	5	1989	c.1319G>A	c.(1318-1320)GGG>GAG	p.G440E	ADAM29_uc003iud.2_Missense_Mutation_p.G440E|ADAM29_uc010irr.2_Missense_Mutation_p.G440E|ADAM29_uc011cki.1_Missense_Mutation_p.G440E	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	440	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TGTGCTTTTGGGCTTTGTTGC	0.448													16	83					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175898490	175898490	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:175898490G>A	uc003iuc.2	+	5	2484	c.1814G>A	c.(1813-1815)GGG>GAG	p.G605E	ADAM29_uc003iud.2_Missense_Mutation_p.G605E|ADAM29_uc010irr.2_Missense_Mutation_p.G605E|ADAM29_uc011cki.1_Missense_Mutation_p.G605E	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	605	Cys-rich.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		ACAGAGTGTGGGATAGATCAT	0.428													46	157					0	0	1	0	0
GPM6A	2823	broad.mit.edu	37	4	176556167	176556167	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:176556167C>T	uc003iuf.2	-	7	1530	c.726G>A	c.(724-726)GTG>GTA	p.V242V	GPM6A_uc011ckj.1_Silent_p.V235V|GPM6A_uc003iug.2_Silent_p.V242V|GPM6A_uc003iuh.2_Silent_p.V231V	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	242	Cytoplasmic (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		AGGCGTCTTTCACATAGGCCC	0.433													16	43					0	0	1	0	0
WDR17	116966	broad.mit.edu	37	4	177041212	177041212	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:177041212G>A	uc003iuj.2	+	5	730	c.574G>A	c.(574-576)GGT>AGT	p.G192S	WDR17_uc003iuk.2_Missense_Mutation_p.G168S|WDR17_uc003ium.3_Missense_Mutation_p.G168S|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	192	WD 3.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		AGTTGTGTTTGGTCATATTGA	0.323													29	153					0	0	1	0	0
WDR17	116966	broad.mit.edu	37	4	177063141	177063141	+	Nonsense_Mutation	SNP	C	T	T	rs142589281		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:177063141C>T	uc003iuj.2	+	12	1678	c.1522C>T	c.(1522-1524)CGA>TGA	p.R508*	WDR17_uc003iuk.2_Nonsense_Mutation_p.R484*|WDR17_uc003ium.3_Nonsense_Mutation_p.R484*|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	508	WD 8.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		TAGTATTATTCGAACAATTGA	0.274													44	89					0	0	1	0	0
SPATA4	132851	broad.mit.edu	37	4	177114160	177114160	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:177114160C>T	uc003iuo.1	-	3	525	c.416G>A	c.(415-417)GGA>GAA	p.G139E		NM_144644	NP_653245	Q8NEY3	SPAT4_HUMAN	spermatogenesis associated 4	139					apoptosis|spermatogenesis						0		Breast(14;0.0011)|Prostate(90;0.0129)|Melanoma(52;0.0133)|Renal(120;0.0376)|all_hematologic(60;0.124)		all cancers(43;2.9e-20)|Epithelial(43;1.99e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.58e-09)|GBM - Glioblastoma multiforme(59;0.000162)|STAD - Stomach adenocarcinoma(60;0.000543)|LUSC - Lung squamous cell carcinoma(193;0.096)		TTCAGGCACTCCAGCTTTACA	0.284													17	38					0	0	1	0	0
ASB5	140458	broad.mit.edu	37	4	177142399	177142399	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:177142399C>T	uc003iuq.1	-	5	593	c.577G>A	c.(577-579)GAT>AAT	p.D193N	ASB5_uc003iup.1_Missense_Mutation_p.D140N	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	193	ANK 4.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		TGGTCAACATCTATGCCCCAG	0.443													11	108					0	0	1	0	0
ASB5	140458	broad.mit.edu	37	4	177146484	177146484	+	Missense_Mutation	SNP	C	T	T	rs144171323		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:177146484C>T	uc003iuq.1	-	2	221	c.205G>A	c.(205-207)GCA>ACA	p.A69T	ASB5_uc003iup.1_Missense_Mutation_p.A16T	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	69	ANK 1.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		GATCGATCTGCCCAGGAACCT	0.318													29	78					0	0	1	0	0
ASB5	140458	broad.mit.edu	37	4	177190142	177190142	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:177190142G>A	uc003iuq.1	-	1	134	c.118C>T	c.(118-120)CAT>TAT	p.H40Y		NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	40					intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		ATGTAGAAATGACTGAGGATG	0.403													26	46					0	0	1	0	0
VEGFC	7424	broad.mit.edu	37	4	177608588	177608588	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:177608588G>A	uc003ius.1	-	6	1328	c.898C>T	c.(898-900)CGG>TGG	p.R300W		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	300	4 X 16 AA repeats of C-X(10)-C-X-C- X(1,3)-C.				angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity	p.R300L(1)		lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		CTGGCAGGCCGAAGCCCCGCT	0.512													11	122					0	0	1	0	0
VEGFC	7424	broad.mit.edu	37	4	177632728	177632728	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:177632728C>T	uc003ius.1	-	4	1059	c.629G>A	c.(628-630)CGA>CAA	p.R210Q		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	210					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		AGACATGCATCGGCAGGAAGT	0.393													10	130					0	0	1	0	0
LOC285501	285501	broad.mit.edu	37	4	178881973	178881973	+	RNA	SNP	C	T	T	rs148169804	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:178881973C>T	uc010iru.2	+	3		c.436C>T				NR_028342				Homo sapiens cDNA clone IMAGE:4828874.												0		all_lung(41;6.03e-08)|Lung NSC(41;4.26e-07)|Breast(14;0.00066)|Melanoma(52;0.00168)|Prostate(90;0.0129)|all_hematologic(60;0.0202)|Renal(120;0.0246)|Colorectal(36;0.0508)|Hepatocellular(41;0.236)		all cancers(43;9.24e-25)|Epithelial(43;6.28e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.29e-10)|LUSC - Lung squamous cell carcinoma(1;2.61e-05)|Lung(1;3.22e-05)|GBM - Glioblastoma multiforme(59;0.000185)|Colorectal(24;0.000244)|STAD - Stomach adenocarcinoma(60;0.000777)|COAD - Colon adenocarcinoma(29;0.000884)		AAATATATTTCTTTCCGGGGA	0.348													34	62					0	0	1	0	0
LOC285501	285501	broad.mit.edu	37	4	178897018	178897018	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:178897018G>A	uc010iru.2	+	5		c.687G>A				NR_028342				Homo sapiens cDNA clone IMAGE:4828874.												0		all_lung(41;6.03e-08)|Lung NSC(41;4.26e-07)|Breast(14;0.00066)|Melanoma(52;0.00168)|Prostate(90;0.0129)|all_hematologic(60;0.0202)|Renal(120;0.0246)|Colorectal(36;0.0508)|Hepatocellular(41;0.236)		all cancers(43;9.24e-25)|Epithelial(43;6.28e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.29e-10)|LUSC - Lung squamous cell carcinoma(1;2.61e-05)|Lung(1;3.22e-05)|GBM - Glioblastoma multiforme(59;0.000185)|Colorectal(24;0.000244)|STAD - Stomach adenocarcinoma(60;0.000777)|COAD - Colon adenocarcinoma(29;0.000884)		ACGGGAAAGGGGTTGAGCAAG	0.403													41	102					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183245205	183245205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183245205C>T	uc003ivd.1	+	1	69	c.32C>T	c.(31-33)TCC>TTC	p.S11F	ODZ3_uc010irv.1_Missense_Mutation_p.S11F	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	11	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CCTTACTGCTCCCTGACCAAG	0.522													13	28					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183652084	183652084	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183652084C>T	uc003ivd.1	+	15	2796	c.2759C>T	c.(2758-2760)TCC>TTC	p.S920F	ODZ3_uc003ive.1_Missense_Mutation_p.S326F	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	920	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTTGAACGATCCCCATTCCTC	0.418													21	23					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183673094	183673094	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183673094C>T	uc003ivd.1	+	19	3808	c.3771C>T	c.(3769-3771)GTC>GTT	p.V1257V	ODZ3_uc003ive.1_Silent_p.V670V	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1257	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CAGAAGTCGTCGCAGGGACAG	0.537													17	48					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183675643	183675643	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183675643C>T	uc003ivd.1	+	21	4160	c.4123C>T	c.(4123-4125)CGC>TGC	p.R1375C	ODZ3_uc003ive.1_Missense_Mutation_p.R788C	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1375	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TCGTCAAGTTCGCATTGCTGC	0.493													6	22					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183675836	183675836	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183675836C>T	uc003ivd.1	+	21	4353	c.4316C>T	c.(4315-4317)TCC>TTC	p.S1439F	ODZ3_uc003ive.1_Missense_Mutation_p.S852F	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1439	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGAGAAATCTCCTTAGTGGCC	0.468													16	39					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183694775	183694775	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183694775C>T	uc003ivd.1	+	22	5080	c.5043C>T	c.(5041-5043)ATC>ATT	p.I1681I		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1681	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TGTCCTCGATCGATTCTTTCT	0.463													19	148					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183696240	183696240	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183696240G>A	uc003ivd.1	+	23	5275	c.5238G>A	c.(5236-5238)TTG>TTA	p.L1746L		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1746	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GTCAAAACTTGGTGGAATGGA	0.522													25	61					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183710312	183710312	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183710312G>A	uc003ivd.1	+	24	5408	c.5371G>A	c.(5371-5373)GAC>AAC	p.D1791N		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1791	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GATCTATGACGACCACCGTAA	0.453													5	16					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183710474	183710474	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183710474G>A	uc003ivd.1	+	24	5570	c.5533G>A	c.(5533-5535)GGA>AGA	p.G1845R		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1845	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGATTATGACGGACAGGGGAG	0.478													10	22					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183713541	183713541	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183713541C>T	uc003ivd.1	+	25	5753	c.5716C>T	c.(5716-5718)CGA>TGA	p.R1906*		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1906	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GCAGACCATCCGATCCATTGG	0.542													22	53					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183714469	183714469	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183714469G>A	uc003ivd.1	+	25	6681	c.6644G>A	c.(6643-6645)CGA>CAA	p.R2215Q		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2215	YD 21.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CTTCTAACTCGAGTTTACAGT	0.483													23	51					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183721410	183721410	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183721410G>A	uc003ivd.1	+	27	8043	c.8006G>A	c.(8005-8007)GGG>GAG	p.G2669E		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2669	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGCTACGACGGGTACTACGTA	0.692													3	15					0	0	1	0	0
FAM92A3	403315	broad.mit.edu	37	4	183959078	183959078	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:183959078G>A	uc003ivi.3	+	1		c.261G>A				NR_003612				Homo sapiens family with sequence similarity 92, member A3, mRNA (cDNA clone IMAGE:4822144).												0						GAGGATGAATGAAATCAACTC	0.473													5	8					0	0	1	0	0
WWC2	80014	broad.mit.edu	37	4	184175043	184175043	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:184175043C>T	uc010irx.2	+	9	1269	c.1087C>T	c.(1087-1089)CCA>TCA	p.P363S	WWC2_uc003ivk.3_Missense_Mutation_p.P158S|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Missense_Mutation_p.P45S	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	363	Potential.									ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		GTTCGTCACCCCACAGAAACG	0.483													4	24					0	0	1	0	0
WWC2	80014	broad.mit.edu	37	4	184210648	184210648	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:184210648C>T	uc010irx.2	+	21	3426	c.3244C>T	c.(3244-3246)CGC>TGC	p.R1082C	WWC2_uc003ivk.3_Missense_Mutation_p.R877C|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Missense_Mutation_p.R764C|WWC2_uc003ivn.3_Missense_Mutation_p.R597C|WWC2_uc010irz.2_Missense_Mutation_p.R423C|WWC2_uc003ivo.3_Missense_Mutation_p.R210C	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	1082	Potential.									ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		CCGGCAGAGCCGCCTCAATGA	0.567													8	32					0	0	1	0	0
WWC2	80014	broad.mit.edu	37	4	184233578	184233578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:184233578C>T	uc010irx.2	+	22	3651	c.3469C>T	c.(3469-3471)CGG>TGG	p.R1157W	WWC2_uc003ivk.3_Missense_Mutation_p.R952W|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Missense_Mutation_p.R839W|WWC2_uc003ivn.3_Missense_Mutation_p.R672W|WWC2_uc010irz.2_Missense_Mutation_p.R498W|WWC2_uc003ivo.3_Missense_Mutation_p.R285W	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	1157										ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		GTGTCGGCTCCGGGAGCAGAG	0.542													24	100					0	0	1	0	0
CLDN22	53842	broad.mit.edu	37	4	184241084	184241084	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:184241084C>T	uc010isa.1	-	1	844	c.288G>A	c.(286-288)CTG>CTA	p.L96L	WWC2_uc010irx.2_3'UTR|WWC2_uc003ivk.3_3'UTR|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_3'UTR|WWC2_uc003ivn.3_3'UTR|WWC2_uc010irz.2_3'UTR|WWC2_uc003ivo.3_3'UTR	NM_001111319	NP_001104789	Q8N7P3	CLD22_HUMAN	claudin 22	96	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.0172)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|Esophageal squamous(56;0.176)		all cancers(43;4.1e-26)|Epithelial(43;6.45e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|Colorectal(24;5.87e-06)|GBM - Glioblastoma multiforme(59;6.5e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		ACCCAGAGACCAGCAGGCCCA	0.527													13	37					0	0	1	0	0
CDKN2AIP	55602	broad.mit.edu	37	4	184366211	184366211	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:184366211C>T	uc003ivp.1	+	1	423	c.261C>T	c.(259-261)TTC>TTT	p.F87F	CDKN2AIP_uc003ivq.1_5'UTR	NM_017632	NP_060102	Q9NXV6	CARF_HUMAN	CDKN2A interacting protein	87					negative regulation of cell growth|positive regulation of signal transduction|regulation of protein stability	granular component|nucleoplasm	double-stranded RNA binding|p53 binding				0		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		ACCACGTCTTCCTCGGGTGCC	0.687													30	77					0	0	1	0	0
ENPP6	133121	broad.mit.edu	37	4	185012502	185012502	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:185012502C>T	uc003iwc.2	-	8	1293	c.1151G>A	c.(1150-1152)AGG>AAG	p.R384K		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	384	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		GTCCACCGACCTGATAGGAGC	0.542													8	98					0	0	1	0	0
ENPP6	133121	broad.mit.edu	37	4	185018422	185018422	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:185018422C>T	uc003iwc.2	-	7	1235	c.1093G>A	c.(1093-1095)GGC>AGC	p.G365S		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	365	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		AGGAAGATGCCCCGCATGTCC	0.592													15	80					0	0	1	0	0
ENPP6	133121	broad.mit.edu	37	4	185018440	185018440	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:185018440C>T	uc003iwc.2	-	7	1217	c.1075G>A	c.(1075-1077)GAG>AAG	p.E359K		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	359	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		TCCATGAGCTCGTTGTCGTAG	0.567													30	62					0	0	1	0	0
IRF2	3660	broad.mit.edu	37	4	185310027	185310027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:185310027G>A	uc003iwf.3	-	9	1135	c.935C>T	c.(934-936)CCC>CTC	p.P312L		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	312					blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		GGAAGAAAGGGGGAGGTCTTG	0.587													36	72					0	0	1	0	0
ACSL1	2180	broad.mit.edu	37	4	185698093	185698093	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:185698093G>A	uc003iww.2	-	6	816	c.522C>T	c.(520-522)ATC>ATT	p.I174I	ACSL1_uc011ckm.1_Silent_p.I3I|ACSL1_uc003iwt.1_Silent_p.I174I|ACSL1_uc003iwu.1_Silent_p.I174I|ACSL1_uc011ckn.1_Silent_p.I140I|ACSL1_uc003iwv.1_Silent_p.I174I	NM_001995	NP_001986	P33121	ACSL1_HUMAN	acyl-CoA synthetase long-chain family member 1	174	Cytoplasmic (Potential).				digestion|fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|regulation of fatty acid oxidation|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			ovary(2)	2		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00172)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0315)|all_neural(102;0.107)|Medulloblastoma(177;0.146)		all cancers(43;1.33e-28)|Epithelial(43;5.3e-25)|OV - Ovarian serous cystadenocarcinoma(60;4.88e-11)|Colorectal(24;3.59e-06)|STAD - Stomach adenocarcinoma(60;2.72e-05)|GBM - Glioblastoma multiforme(59;2.83e-05)|BRCA - Breast invasive adenocarcinoma(30;7.66e-05)|COAD - Colon adenocarcinoma(29;0.000538)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.0419)	Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	AAAGTGGAACGATCACCATCG	0.388													4	46					0	0	1	0	0
KIAA1430	57587	broad.mit.edu	37	4	186111405	186111405	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:186111405C>T	uc003ixf.3	-	2	1093	c.946G>A	c.(946-948)GAG>AAG	p.E316K	KIAA1430_uc003ixg.2_Missense_Mutation_p.E316K	NM_020827	NP_065878	Q9P2B7	K1430_HUMAN	hypothetical protein LOC57587	316											0		all_lung(41;1.19e-13)|Lung NSC(41;3.16e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00872)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;9.44e-26)|Epithelial(43;2.64e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.66e-11)|Colorectal(24;6.03e-05)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.000331)|COAD - Colon adenocarcinoma(29;0.000427)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00924)|READ - Rectum adenocarcinoma(43;0.165)		ACATCAGGCTCATGTTTTTCT	0.348													8	27					0	0	1	0	0
PDLIM3	27295	broad.mit.edu	37	4	186429496	186429496	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:186429496G>A	uc003ixw.3	-	5	743	c.619C>T	c.(619-621)CAG>TAG	p.Q207*	PDLIM3_uc003ixx.3_Intron|PDLIM3_uc010isi.2_Intron	NM_014476	NP_055291	Q53GG5	PDLI3_HUMAN	PDZ and LIM domain protein 3 isoform a	207						sarcomere	zinc ion binding			ovary(2)	2		all_lung(41;1.03e-13)|Lung NSC(41;2.49e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.00996)|Colorectal(36;0.0161)|all_hematologic(60;0.0592)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.4e-10)|BRCA - Breast invasive adenocarcinoma(30;8.64e-05)|GBM - Glioblastoma multiforme(59;0.000167)|STAD - Stomach adenocarcinoma(60;0.000828)|LUSC - Lung squamous cell carcinoma(40;0.00984)|COAD - Colon adenocarcinoma(29;0.0115)|READ - Rectum adenocarcinoma(43;0.171)		ACCTGACCCTGGAGTGTTTCC	0.418													40	96					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186541233	186541233	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:186541233C>T	uc003iyl.2	-	14	3434	c.2576G>A	c.(2575-2577)GGA>GAA	p.G859E	SORBS2_uc003iyh.2_Missense_Mutation_p.G583E|SORBS2_uc011ckw.1_Missense_Mutation_p.G420E|SORBS2_uc003iyi.2_Missense_Mutation_p.G490E|SORBS2_uc011ckx.1_Missense_Mutation_p.G425E|SORBS2_uc003iyk.2_Missense_Mutation_p.G403E|SORBS2_uc003iym.2_Missense_Mutation_p.G959E|SORBS2_uc003iyn.1_Missense_Mutation_p.G450E|SORBS2_uc011cku.1_Missense_Mutation_p.G251E|SORBS2_uc011ckv.1_Missense_Mutation_p.G763E|SORBS2_uc003iyd.2_Missense_Mutation_p.G558E|SORBS2_uc003iye.2_Missense_Mutation_p.G432E|SORBS2_uc003iya.2_Missense_Mutation_p.G379E|SORBS2_uc003iyb.2_Missense_Mutation_p.G332E|SORBS2_uc003iyc.2_Missense_Mutation_p.G312E|SORBS2_uc003iyg.2_Missense_Mutation_p.G973E|SORBS2_uc003iyf.2_Missense_Mutation_p.G395E|SORBS2_uc003iyo.1_Missense_Mutation_p.G308E	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	859						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		TTCTGGAGTTCCTCTTCTTTC	0.438													94	232					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186544533	186544533	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:186544533C>T	uc003iyl.2	-	13	2896	c.2038G>A	c.(2038-2040)GAA>AAA	p.E680K	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.E780K|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.E584K|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.E794K|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	680						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		TCGGTGTTTTCGTGTCTGGCT	0.448													43	153					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186544548	186544548	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:186544548C>T	uc003iyl.2	-	13	2881	c.2023G>A	c.(2023-2025)GAA>AAA	p.E675K	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.E775K|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.E579K|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.E789K|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	675						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		CTGGCTCTTTCGTGTTTTAAC	0.423													23	162					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186545156	186545156	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:186545156G>A	uc003iyl.2	-	13	2273	c.1415C>T	c.(1414-1416)TCC>TTC	p.S472F	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.S572F|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.S376F|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.S586F|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	472						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		GGACTTCACGGAGCAGATCAC	0.607													32	83					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186545280	186545280	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:186545280G>A	uc003iyl.2	-	13	2149	c.1291C>T	c.(1291-1293)CGC>TGC	p.R431C	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.R531C|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.R335C|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.R545C|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	431						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		CCGTTACTGCGAACCTCCGGG	0.592													22	56					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186545533	186545533	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:186545533C>T	uc003iyl.2	-	13	1896	c.1038G>A	c.(1036-1038)CGG>CGA	p.R346R	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Silent_p.R446R|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Silent_p.R250R|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Silent_p.R460R|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	346						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		TTGGTGAGTCCCGAGGGACAT	0.502													25	69					0	0	1	0	0
TLR3	7098	broad.mit.edu	37	4	187003942	187003942	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187003942C>T	uc003iyq.2	+	4	1203	c.1102C>T	c.(1102-1104)CCA>TCA	p.P368S	TLR3_uc011ckz.1_Missense_Mutation_p.P91S|TLR3_uc003iyr.2_Missense_Mutation_p.P91S	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	368	LRR 13.|Lumenal (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TAATGATATTCCAGGCATAAA	0.343													15	36					0	0	1	0	0
TLR3	7098	broad.mit.edu	37	4	187004313	187004313	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187004313C>T	uc003iyq.2	+	4	1574	c.1473C>T	c.(1471-1473)GCC>GCT	p.A491A	TLR3_uc011ckz.1_Silent_p.A214A|TLR3_uc003iyr.2_Silent_p.A214A	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	491	Lumenal (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		GAAGGGTGGCCCTTAAAAATG	0.448													50	92					0	0	1	0	0
FAM149A	25854	broad.mit.edu	37	4	187086556	187086556	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187086556C>T	uc003iyt.3	+	11	1681	c.1102C>T	c.(1102-1104)CCC>TCC	p.P368S	FAM149A_uc011cla.1_Missense_Mutation_p.P368S|FAM149A_uc003iyu.3_Missense_Mutation_p.P368S|FAM149A_uc010isl.2_Missense_Mutation_p.P368S|FAM149A_uc011clb.1_Missense_Mutation_p.P368S	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	659										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		GAGCAGGTTCCCCCCGCTAGT	0.537													19	60					0	0	1	0	0
FAM149A	25854	broad.mit.edu	37	4	187093119	187093119	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187093119G>A	uc003iyt.3	+	14	2006	c.1427G>A	c.(1426-1428)AGG>AAG	p.R476K	FAM149A_uc003iyu.3_Missense_Mutation_p.R476K|FAM149A_uc010isl.2_Missense_Mutation_p.R476K|FAM149A_uc011clb.1_Missense_Mutation_p.R475K	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	767										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		ACTTTCAAGAGGAGATTCCAA	0.418													13	96					0	0	1	0	0
CYP4V2	285440	broad.mit.edu	37	4	187118158	187118158	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187118158G>A	uc003iyw.3	+	4	782	c.478G>A	c.(478-480)GAA>AAA	p.E160K		NM_207352	NP_997235	Q6ZWL3	CP4V2_HUMAN	cytochrome P450, family 4, subfamily v,	160					response to stimulus|visual perception	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.33e-10)|BRCA - Breast invasive adenocarcinoma(30;3.84e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000293)|LUSC - Lung squamous cell carcinoma(40;0.00242)|READ - Rectum adenocarcinoma(43;0.17)		TACCATTCTGGAAGATTTCTT	0.308													27	71					0	0	1	0	0
CYP4V2	285440	broad.mit.edu	37	4	187130354	187130354	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187130354T>A	uc003iyw.3	+	10	1637	c.1333T>A	c.(1333-1335)TTC>ATC	p.F445I	CYP4V2_uc010ism.2_RNA	NM_207352	NP_997235	Q6ZWL3	CP4V2_HUMAN	cytochrome P450, family 4, subfamily v,	445					response to stimulus|visual perception	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.33e-10)|BRCA - Breast invasive adenocarcinoma(30;3.84e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000293)|LUSC - Lung squamous cell carcinoma(40;0.00242)|READ - Rectum adenocarcinoma(43;0.17)		TGAGCGGTTCTTCCCCGAGAA	0.527													37	117					0	0	1	0	0
CYP4V2	285440	broad.mit.edu	37	4	187131739	187131739	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187131739C>T	uc003iyw.3	+	11	1826	c.1522C>T	c.(1522-1524)CGT>TGT	p.R508C	CYP4V2_uc010ism.2_RNA	NM_207352	NP_997235	Q6ZWL3	CP4V2_HUMAN	cytochrome P450, family 4, subfamily v,	508			R -> H (in BCD).		response to stimulus|visual perception	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.33e-10)|BRCA - Breast invasive adenocarcinoma(30;3.84e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000293)|LUSC - Lung squamous cell carcinoma(40;0.00242)|READ - Rectum adenocarcinoma(43;0.17)		GTTGATTCTTCGTCCAAGTAA	0.403													22	76					0	0	1	0	0
KLKB1	3818	broad.mit.edu	37	4	187153312	187153312	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187153312C>A	uc003iyy.2	+	3	161	c.90C>A	c.(88-90)TTC>TTA	p.F30L	KLKB1_uc011clc.1_5'UTR|KLKB1_uc011cld.1_5'UTR	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	30	Apple 1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		AAAACGCCTTCTTCAGAGGTG	0.383													50	117					3.28156e-27	3.30108e-27	1	1	0
KLKB1	3818	broad.mit.edu	37	4	187172751	187172751	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187172751C>T	uc003iyy.2	+	9	1050	c.979C>T	c.(979-981)CGC>TGC	p.R327C	KLKB1_uc011clc.1_Missense_Mutation_p.R125C|KLKB1_uc011cld.1_Missense_Mutation_p.R289C	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	327	Apple 4.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		AAAGATGATTCGCTGTCAGTT	0.353													38	87					0	0	1	0	0
KLKB1	3818	broad.mit.edu	37	4	187172781	187172781	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187172781C>T	uc003iyy.2	+	9	1080	c.1009C>T	c.(1009-1011)CCA>TCA	p.P337S	KLKB1_uc011clc.1_Missense_Mutation_p.P135S|KLKB1_uc011cld.1_Missense_Mutation_p.P299S	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	337	Apple 4.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		TTCTTTACTCCCAGAAGACTG	0.363													27	80					0	0	1	0	0
F11	2160	broad.mit.edu	37	4	187192915	187192915	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187192915C>T	uc003iza.1	+	3	541	c.208C>T	c.(208-210)CCC>TCC	p.P70S	F11_uc003iyz.2_Missense_Mutation_p.P70S	NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	70	Apple 1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	ATCTGAGGATCCCACCCGATG	0.418													28	97					0	0	1	0	0
F11	2160	broad.mit.edu	37	4	187201178	187201178	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187201178C>T	uc003iza.1	+	8	1101	c.768C>T	c.(766-768)CTC>CTT	p.L256L		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	256	Apple 3.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	ATCTTTGTCTCCTTAAAACAT	0.373													29	75					0	0	1	0	0
F11	2160	broad.mit.edu	37	4	187205268	187205268	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187205268C>T	uc003iza.1	+	11	1491	c.1158C>T	c.(1156-1158)CCC>CCT	p.P386P		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	386					blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	AAATCAAGCCCAGGATCGTTG	0.517													29	79					0	0	1	0	0
F11	2160	broad.mit.edu	37	4	187206877	187206877	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187206877C>T	uc003iza.1	+	12	1723	c.1390C>T	c.(1390-1392)CAA>TAA	p.Q464*		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	464	Peptidase S1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	CTTTGGGGTTCAAGAAATAAT	0.378													56	92					0	0	1	0	0
F11	2160	broad.mit.edu	37	4	187209716	187209716	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187209716C>T	uc003iza.1	+	15	2159	c.1826C>T	c.(1825-1827)ACC>ATC	p.T609I	uc003izb.1_RNA	NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	609	Peptidase S1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	GGTGTTTACACCAACGTGGTC	0.567													11	72					0	0	1	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455657	187455657	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187455657G>A	uc003izd.1	-	2	257	c.239C>T	c.(238-240)CCG>CTG	p.P80L		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	80	Helical; Name=2; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	CAACGGGTACGGATAAATGGC	0.502													21	49					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187509917	187509917	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187509917G>A	uc003izf.2	-	27	13784	c.13596C>T	c.(13594-13596)GTC>GTT	p.V4532V	FAT1_uc010isn.2_Silent_p.V179V|FAT1_uc003ize.2_Silent_p.V423V	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4532	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GCATGCTCTCGACAGCGGGCG	0.557										HNSCC(5;0.00058)			13	51					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187509969	187509969	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187509969G>A	uc003izf.2	-	27	13732	c.13544C>T	c.(13543-13545)CCC>CTC	p.P4515L	FAT1_uc010isn.2_Missense_Mutation_p.P162L|FAT1_uc003ize.2_Missense_Mutation_p.P406L	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4515	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AGGGGCATGGGGTTCTCTACA	0.517										HNSCC(5;0.00058)			20	57					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187524930	187524930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187524930G>A	uc003izf.2	-	19	10938	c.10750C>T	c.(10750-10752)CCT>TCT	p.P3584S		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3584	Extracellular (Potential).|Cadherin 33.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TCCATCTGAGGGTCGAGACTG	0.483										HNSCC(5;0.00058)			8	26					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187535466	187535466	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187535466G>A	uc003izf.2	-	12	9296	c.9108C>T	c.(9106-9108)GTC>GTT	p.V3036V		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3036	Extracellular (Potential).|Cadherin 28.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TTCCAGGAAGGACGTCTTCAG	0.388										HNSCC(5;0.00058)			28	58					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187542685	187542685	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187542685G>A	uc003izf.2	-	10	5243	c.5055C>T	c.(5053-5055)TTC>TTT	p.F1685F		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1685	Extracellular (Potential).|Cadherin 15.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CCATCCCAACGAAACTCCCAA	0.388										HNSCC(5;0.00058)			24	76					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187542889	187542889	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187542889G>A	uc003izf.2	-	10	5039	c.4851C>T	c.(4849-4851)GGC>GGT	p.G1617G		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1617	Extracellular (Potential).|Cadherin 14.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TTTTAATAGAGCCCAAGACAG	0.368										HNSCC(5;0.00058)			6	16					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187629015	187629015	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:187629015G>A	uc003izf.2	-	2	2155	c.1967C>T	c.(1966-1968)CCA>CTA	p.P656L	FAT1_uc010iso.1_Missense_Mutation_p.P656L	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	656	Extracellular (Potential).|Cadherin 5.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GATATATAATGGTGTGGCAAA	0.448										HNSCC(5;0.00058)			30	74					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188924294	188924294	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:188924294C>T	uc003izg.1	+	3	578	c.333C>T	c.(331-333)TTC>TTT	p.F111F	ZFP42_uc003izh.1_Silent_p.F111F|ZFP42_uc003izi.1_Silent_p.F111F	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	111					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		AAAAGGTTTTCGAAGCAAGCT	0.408													35	87					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188924639	188924639	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:188924639C>T	uc003izg.1	+	3	923	c.678C>T	c.(676-678)TTC>TTT	p.F226F	ZFP42_uc003izh.1_Silent_p.F226F|ZFP42_uc003izi.1_Silent_p.F226F	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	226	C2H2-type 2.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GGAAAGCGTTCGTTGAGAGCT	0.507													30	76					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188924799	188924799	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:188924799C>T	uc003izg.1	+	3	1083	c.838C>T	c.(838-840)CAA>TAA	p.Q280*	ZFP42_uc003izh.1_Nonsense_Mutation_p.Q280*|ZFP42_uc003izi.1_Nonsense_Mutation_p.Q280*	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	280	C2H2-type 4.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GTGTCCCTTTCAAGGCTGCAA	0.483													24	34					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188924844	188924844	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:188924844C>T	uc003izg.1	+	3	1128	c.883C>T	c.(883-885)CAC>TAC	p.H295Y	ZFP42_uc003izh.1_Missense_Mutation_p.H295Y|ZFP42_uc003izi.1_Missense_Mutation_p.H295Y	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	295	C2H2-type 4.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		CCTGAAAGCCCACATCCTAAC	0.463													10	42					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189012603	189012603	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189012603G>A	uc003izl.2	-	7	1124	c.1088C>T	c.(1087-1089)CCA>CTA	p.P363L	TRIML2_uc003izj.1_Missense_Mutation_p.P191L|TRIML2_uc003izk.1_Missense_Mutation_p.P171L|TRIML2_uc011cle.1_Missense_Mutation_p.P438L	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	363	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GTCTCCATTTGGGATACAGAG	0.453													17	104					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189012653	189012653	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189012653G>A	uc003izl.2	-	7	1074	c.1038C>T	c.(1036-1038)TCC>TCT	p.S346S	TRIML2_uc003izj.1_Silent_p.S174S|TRIML2_uc003izk.1_Silent_p.S154S|TRIML2_uc011cle.1_Silent_p.S421S	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	346	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		AGGCGCAATGGGAGAAATTGT	0.478													51	105					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189020234	189020234	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189020234C>T	uc003izl.2	-	4	462	c.426G>A	c.(424-426)GTG>GTA	p.V142V	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Silent_p.V192V|TRIML2_uc011clf.1_Silent_p.V192V	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	142	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TCTCAAGCTCCACGATGAGCT	0.478													30	90					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189022399	189022399	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189022399C>T	uc003izl.2	-	3	177	c.141G>A	c.(139-141)GAG>GAA	p.E47E	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Silent_p.E97E|TRIML2_uc011clf.1_Silent_p.E97E	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	47	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		AATTTTGTTCCTCTTCCTTCC	0.328													16	46					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189025997	189025997	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189025997C>T	uc003izl.2	-	2	165	c.129G>A	c.(127-129)ATG>ATA	p.M43I	TRIML2_uc011cle.1_Missense_Mutation_p.M93I|TRIML2_uc011clf.1_Missense_Mutation_p.M93I	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	43	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TGACCTGAATCATCGCCATTC	0.358													35	103					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189060833	189060833	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189060833C>T	uc003izm.1	+	1	236	c.121C>T	c.(121-123)CTC>TTC	p.L41F		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	41	RING-type.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GGTGTGTCTCCTCAGGAGCTG	0.547													87	206					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189065004	189065004	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189065004G>A	uc003izm.1	+	4	863	c.748G>A	c.(748-750)GCC>ACC	p.A250T	TRIML1_uc003izn.1_5'UTR	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	250					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		AGTGAGAGGAGCCCTGGAAAG	0.478													69	193					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189065014	189065014	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189065014G>A	uc003izm.1	+	4	873	c.758G>A	c.(757-759)AGG>AAG	p.R253K	TRIML1_uc003izn.1_5'UTR	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	253					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GCCCTGGAAAGGTAGGCTTTC	0.493													48	199					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189065209	189065209	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189065209C>T	uc003izm.1	+	5	893	c.778C>T	c.(778-780)CAG>TAG	p.Q260*	TRIML1_uc003izn.1_5'UTR	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	260					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		ACTCTTGCTTCAGTGTCCAGA	0.552													8	29					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189068185	189068185	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189068185G>A	uc003izm.1	+	6	1181	c.1066G>A	c.(1066-1068)GGC>AGC	p.G356S	TRIML1_uc003izn.1_Missense_Mutation_p.G80S	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	356	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GTGGGAAGTGGGCATCTGCAA	0.517													16	68					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189068247	189068247	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr4:189068247C>T	uc003izm.1	+	6	1243	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	TRIML1_uc003izn.1_Silent_p.F100F	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	376	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GGGACCTGTTCTCACTAATAG	0.527													21	111					0	0	1	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	140781	140781	+	Missense_Mutation	SNP	G	A	A	rs143686104	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140781G>A	uc003jak.2	+	1	409	c.359G>A	c.(358-360)GGG>GAG	p.G120E		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	120					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CAAGCTGTGGGGACCCCAAAC	0.662													11	27					0	0	1	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	145001	145002	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145001_145002CC>TT	uc003jak.2	+	4	853_854	c.803_804CC>TT	c.(802-804)GCC>GTT	p.A268V		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	268					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		AGTCCAGCTGCCCCTGCCGTCT	0.609													15	36					0	0	1	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	156195	156195	+	Missense_Mutation	SNP	G	A	A	rs138938524		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156195G>A	uc003jak.2	+	8	1200	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	384					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity	p.E384*(1)		skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GGAAGTCGCCGAGTTAATTGA	0.582													13	75					0	0	1	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	163581	163581	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:163581C>T	uc003jak.2	+	11	2376	c.2326C>T	c.(2326-2328)CCC>TCC	p.P776S		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	776					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		TGCCAGGAGCCCCCCGGTCAC	0.652													15	34					0	0	1	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	173024	173024	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:173024G>A	uc003jak.2	+	15	3045	c.2995G>A	c.(2995-2997)GAA>AAA	p.E999K		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	999	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GAATTTGAAGGAACAGGGGCA	0.498													31	74					0	0	1	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	174096	174096	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:174096C>T	uc003jak.2	+	16	3267	c.3217C>T	c.(3217-3219)CGC>TGC	p.R1073C		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	1073	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GATTTGGTTTCGCAGGCGGCG	0.562													5	12					0	0	1	0	0
EXOC3	11336	broad.mit.edu	37	5	457111	457111	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:457111C>T	uc003jba.2	+	5	1282	c.1154C>T	c.(1153-1155)TCC>TTC	p.S385F		NM_007277	NP_009208	O60645	EXOC3_HUMAN	Sec6 protein	396					exocytosis|protein transport						0		Ovarian(839;0.0563)	Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			ACGTACATGTCCACGCTCACT	0.587													5	25					0	0	1	0	0
SLC9A3	6550	broad.mit.edu	37	5	484774	484775	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:484774_484775CC>TT	uc003jbe.2	-	5	904_905	c.792_793GG>AA	c.(790-795)GTGGGG>GTAAGG	p.G265R	SLC9A3_uc011clx.1_Missense_Mutation_p.G265R	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	265	Helical; Name=H/M6; (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			AAGACCACCCCCACCAGCGTGC	0.644													29	66					0	0	1	0	0
ZDHHC11	79844	broad.mit.edu	37	5	843767	843767	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:843767G>A	uc011cma.1	-	4	960	c.576C>T	c.(574-576)CTC>CTT	p.L192L	ZDHHC11_uc003jbj.2_RNA|ZDHHC11_uc010itd.1_5'Flank|ZDHHC11_uc003jbk.2_5'UTR	NM_024786	NP_079062	Q9H8X9	ZDH11_HUMAN	zinc finger, DHHC-type containing 11	192	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			skin(1)|pancreas(1)	2			Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)			GGTACTGGACGAGGACATACA	0.637													9	37					0	0	1	0	0
TRIP13	9319	broad.mit.edu	37	5	893150	893150	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:893150C>T	uc003jbr.2	+	1	147	c.37C>T	c.(37-39)CCC>TCC	p.P13S	BRD9_uc003jbl.2_5'Flank|BRD9_uc003jbm.2_5'Flank|BRD9_uc003jbn.2_5'Flank|BRD9_uc011cmb.1_5'Flank|BRD9_uc003jbo.2_5'Flank|BRD9_uc003jbq.2_5'Flank|BRD9_uc011cmc.1_5'Flank|TRIP13_uc010ite.1_Missense_Mutation_p.P13S	NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	13					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			GCAGGCGCTTCCCTGTGTGGC	0.726													6	8					0	0	1	0	0
SLC12A7	10723	broad.mit.edu	37	5	1064220	1064220	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1064220G>A	uc003jbu.2	-	19	2651	c.2585C>T	c.(2584-2586)CCC>CTC	p.P862L		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	862	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	CAGCAGGAAGGGCAGCAGCAT	0.692													10	24					0	0	1	0	0
SLC12A7	10723	broad.mit.edu	37	5	1078005	1078005	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1078005C>T	uc003jbu.2	-	12	1638	c.1572G>A	c.(1570-1572)ACG>ACA	p.T524T		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	524	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	GCGGTGCCCCCGTGAGGCTCT	0.692													4	15					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1208909	1208909	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1208909C>T	uc003jbw.3	+	2	307	c.251C>T	c.(250-252)CCC>CTC	p.P84L		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	84	Helical; Name=2; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GAGGGCATCCCCCTGCTGTAC	0.667													29	106					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1212541	1212541	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1212541C>T	uc003jbw.3	+	4	661	c.605C>T	c.(604-606)GCC>GTC	p.A202V		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	202	Helical; Name=4; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CTGTGCCTGGCCTGCGCATGG	0.637													13	145					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1213673	1213673	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1213673C>T	uc003jbw.3	+	5	815	c.759C>T	c.(757-759)TTC>TTT	p.F253F		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	253	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GCATCGTCTTCCTCTTCACGC	0.652													15	21					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1217051	1217051	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1217051C>T	uc003jbw.3	+	8	1220	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	388	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCAACGCCTTCCTCTCAGAGG	0.662													41	86					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1221818	1221818	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1221818G>A	uc003jbw.3	+	12	1760	c.1704G>A	c.(1702-1704)GAG>GAA	p.E568E		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	568	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CTCCCCAGGAGGAATTTCCCA	0.592													13	49					0	0	1	0	0
SLC6A18	348932	broad.mit.edu	37	5	1235690	1235690	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1235690C>T	uc003jby.1	+	4	657	c.534C>T	c.(532-534)TCC>TCT	p.S178S		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	178	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			ACAGTGGCTCCATCCAGTGGT	0.572													40	95					0	0	1	0	0
SLC6A18	348932	broad.mit.edu	37	5	1240646	1240646	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1240646G>A	uc003jby.1	+	7	969	c.846G>A	c.(844-846)AGG>AGA	p.R282R		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	282	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TTGTGCCCAGGAATGACTGCC	0.587													21	36					0	0	1	0	0
SLC6A18	348932	broad.mit.edu	37	5	1243834	1243835	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1243834_1243835GG>AA	uc003jby.1	+	9	1419_1420	c.1296_1297GG>AA	c.(1294-1299)GTGGGG>GTAAGG	p.G433R		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	433	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TGCTGGACGTGGGGGTCCTGCC	0.653													8	52					0	0	1	0	0
SLC6A18	348932	broad.mit.edu	37	5	1246031	1246031	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1246031C>T	uc003jby.1	+	12	1848	c.1725C>T	c.(1723-1725)TCC>TCT	p.S575S		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	575	Helical; Name=12; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TGCTGCTGTCCTTGCTGCCCG	0.716													13	22					0	0	1	0	0
SLC6A18	348932	broad.mit.edu	37	5	1246138	1246138	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1246138C>T	uc003jby.1	+	12	1955	c.1832C>T	c.(1831-1833)CCG>CTG	p.P611L		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	611	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GACATGCGCCCGGACACGGAC	0.746													4	8					0	0	1	0	0
TERT	7015	broad.mit.edu	37	5	1255475	1255475	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1255475G>T	uc003jcb.1	-	14	3142	c.3084C>A	c.(3082-3084)AAC>AAA	p.N1028K	TERT_uc003jbz.1_Missense_Mutation_p.N224K|TERT_uc003jca.1_Missense_Mutation_p.N1016K|TERT_uc003jcc.1_Missense_Mutation_p.N965K|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	1028	CTE.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			AAAATGTGGGGTTCTTCCAAA	0.557									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				8	48					1.06961e-07	1.07224e-07	1	1	0
TERT	7015	broad.mit.edu	37	5	1268709	1268709	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1268709G>T	uc003jcb.1	-	9	2566	c.2508C>A	c.(2506-2508)ATC>ATA	p.I836I	TERT_uc003jbz.1_Silent_p.I32I|TERT_uc003jca.1_Silent_p.I824I|TERT_uc003jcc.1_Silent_p.I836I|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	836	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GCGTGGAGAGGATGGAGCCCT	0.652									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				12	41					0.00316338	0.00316523	1	1	0
TERT	7015	broad.mit.edu	37	5	1268745	1268745	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1268745G>A	uc003jcb.1	-	9	2530	c.2472C>T	c.(2470-2472)TCC>TCT	p.S824S	TERT_uc003jbz.1_Silent_p.S20S|TERT_uc003jca.1_Silent_p.S812S|TERT_uc003jcc.1_Silent_p.S824S|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	824	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			ACTGGACGTAGGACCTGGGGC	0.602									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				10	41					0	0	1	0	0
TERT	7015	broad.mit.edu	37	5	1271266	1271266	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1271266G>A	uc003jcb.1	-	8	2494	c.2436C>T	c.(2434-2436)TTC>TTT	p.F812F	TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Silent_p.F800F|TERT_uc003jcc.1_Silent_p.F812F|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	812	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGTGGCACATGAAGCGTAGGA	0.652									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				6	52					0	0	1	0	0
TERT	7015	broad.mit.edu	37	5	1272354	1272354	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1272354G>A	uc003jcb.1	-	7	2386	c.2328C>T	c.(2326-2328)TTC>TTT	p.F776F	TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Silent_p.F764F|TERT_uc003jcc.1_Silent_p.F776F|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	776	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGTGAGCCACGAACTGTCGCA	0.657									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				6	16					0	0	1	0	0
TERT	7015	broad.mit.edu	37	5	1278759	1278759	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1278759G>A	uc003jcb.1	-	6	2341	c.2283C>T	c.(2281-2283)AGC>AGT	p.S761S	TERT_uc003jbz.1_Missense_Mutation_p.A18V|TERT_uc003jca.1_Silent_p.S749S|TERT_uc003jcc.1_Silent_p.S761S|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	761	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			ACCTTACGTGGCTCTTGAAGG	0.552									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				152	308					0	0	1	0	0
SLC6A3	6531	broad.mit.edu	37	5	1403202	1403202	+	Silent	SNP	G	A	A	rs138475489	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1403202G>A	uc003jck.2	-	13	1723	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	534	Helical; Name=11; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	CCACGACCACGAACTGCAACC	0.632													9	17					0	0	1	0	0
SLC6A3	6531	broad.mit.edu	37	5	1422039	1422039	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1422039G>A	uc003jck.2	-	5	865	c.744C>T	c.(742-744)ATC>ATT	p.I248I		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	248	Helical; Name=4; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	AGAGCAGCACGATGACCAGCA	0.647													26	90					0	0	1	0	0
SLC6A3	6531	broad.mit.edu	37	5	1441598	1441598	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1441598G>A	uc003jck.2	-	3	415	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	98	Helical; Name=2; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	AGGGGACCAGGAAGGCACCTG	0.597													13	36					0	0	1	0	0
LPCAT1	79888	broad.mit.edu	37	5	1474126	1474126	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1474126G>A	uc003jcm.2	-	11	1242	c.1125C>T	c.(1123-1125)TCC>TCT	p.S375S		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	375	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		GGACTTCCAGGGAGGCGGCAA	0.532													19	34					0	0	1	0	0
IRX4	50805	broad.mit.edu	37	5	1879722	1879722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:1879722C>T	uc003jcz.2	-	4	751	c.632G>A	c.(631-633)CGG>CAG	p.R211Q	IRX4_uc011cmf.1_Missense_Mutation_p.R72Q	NM_016358	NP_057442	P78413	IRX4_HUMAN	iroquois homeobox 4	211					heart development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(108;0.242)		GCACTTGTTCCGCGGCGGCCA	0.483													9	79					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5182205	5182205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:5182205C>T	uc003jdl.2	+	4	688	c.550C>T	c.(550-552)CCT>TCT	p.P184S	ADAMTS16_uc003jdk.1_Missense_Mutation_p.P184S|ADAMTS16_uc003jdj.1_Missense_Mutation_p.P184S	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	184					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						AAGGCCACTTCCTTCACACCT	0.488													43	97					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5235148	5235148	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:5235148C>T	uc003jdl.2	+	13	2010	c.1872C>T	c.(1870-1872)TTC>TTT	p.F624F	ADAMTS16_uc003jdk.1_Silent_p.F624F|ADAMTS16_uc010itk.1_RNA	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	624	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						GAGGGAAGTTCTGTGAGGGCT	0.448													25	62					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5235236	5235236	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:5235236G>A	uc003jdl.2	+	13	2098	c.1960G>A	c.(1960-1962)GAG>AAG	p.E654K	ADAMTS16_uc003jdk.1_Missense_Mutation_p.E654K|ADAMTS16_uc010itk.1_RNA	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	654	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TCAGTGTGCCGAGCACAACAG	0.527													23	63					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5239360	5239360	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:5239360C>T	uc003jdl.2	+	15	2389	c.2251C>T	c.(2251-2253)CTC>TTC	p.L751F	ADAMTS16_uc003jdk.1_Missense_Mutation_p.L751F|ADAMTS16_uc010itk.1_RNA	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	751	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TCACAGGGGTCTCTACACCAA	0.512													39	152					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5239910	5239910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:5239910G>A	uc003jdl.2	+	16	2533	c.2395G>A	c.(2395-2397)GGG>AGG	p.G799R	ADAMTS16_uc003jdk.1_Missense_Mutation_p.G799R	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	799	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CTACCTGAATGGGCACTGGAC	0.522													33	107					0	0	1	0	0
KIAA0947	23379	broad.mit.edu	37	5	5457778	5457778	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:5457778C>T	uc003jdm.3	+	12	1247	c.1025C>T	c.(1024-1026)CCT>CTT	p.P342L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	342	Pro-rich.									ovary(1)|central_nervous_system(1)	2						CTTCCCCCTCCTCTTCTGTCA	0.463													22	275					0	0	1	0	0
KIAA0947	23379	broad.mit.edu	37	5	5457844	5457844	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:5457844C>T	uc003jdm.3	+	12	1313	c.1091C>T	c.(1090-1092)TCA>TTA	p.S364L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	364	Pro-rich.									ovary(1)|central_nervous_system(1)	2						TTACCGTCTTCATTTGCACCT	0.463													80	250					0	0	1	0	0
PAPD7	11044	broad.mit.edu	37	5	6750520	6750520	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:6750520C>T	uc003jdx.1	+	10	1143	c.1014C>T	c.(1012-1014)CCC>CCT	p.P338P	PAPD7_uc011cmn.1_Silent_p.P329P|PAPD7_uc010itl.1_Silent_p.P158P	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	338					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						CCGAGTCTCCCTATGGCCAGC	0.552													25	57					0	0	1	0	0
PAPD7	11044	broad.mit.edu	37	5	6753012	6753012	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:6753012C>T	uc003jdx.1	+	12	1425	c.1296C>T	c.(1294-1296)ACC>ACT	p.T432T	PAPD7_uc011cmn.1_Silent_p.T423T|PAPD7_uc010itl.1_Silent_p.T252T	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	432					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						CTCCACCGACCCTAGGGGTTG	0.527													31	73					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	7303854	7303854	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:7303854C>T	uc003jdy.1	-	5		c.500G>A								Homo sapiens cDNA FLJ42124 fis, clone TESTI2009477, weakly  similar to TRICHOHYALIN.																		TTCAAATTTCCTGGCAGCATC	0.498													12	13					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	7304345	7304345	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:7304345C>T	uc003jdy.1	-	3		c.366G>A								Homo sapiens cDNA FLJ42124 fis, clone TESTI2009477, weakly  similar to TRICHOHYALIN.																		ATCATGTTACCTCTTTCAGCT	0.557													7	13					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9052063	9052063	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:9052063G>A	uc003jek.2	-	20	3479	c.2767C>T	c.(2767-2769)CTG>TTG	p.L923L		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	923	Extracellular (Potential).|TSP type-1 7.				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						ATGGGGAACAGGAGGATGCAC	0.587													14	38					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9066649	9066649	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:9066649C>T	uc003jek.2	-	17	2895	c.2183G>A	c.(2182-2184)CGA>CAA	p.R728Q		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	728	TSP type-1 4.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GTATCGGAATCGTTGCTCATA	0.547													53	115					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9119182	9119182	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:9119182C>T	uc003jek.2	-	15	2565	c.1853G>A	c.(1852-1854)CGG>CAG	p.R618Q		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	618	TSP type-1 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GGAGCGCTGCCGCACCTGGAA	0.652													8	25					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9197355	9197355	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:9197355G>A	uc003jek.2	-	10	1705	c.993C>T	c.(991-993)TTC>TTT	p.F331F		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	331	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						AGGGCCCAGAGAAGGCCTGCG	0.602													41	92					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9337875	9337875	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:9337875G>A	uc003jek.2	-	4	886	c.174C>T	c.(172-174)TTC>TTT	p.F58F		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	58	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						TTAACTGCGAGAAATCCACAG	0.333													26	93					0	0	1	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629337	9629337	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:9629337G>A	uc003jem.1	-	1	1127	c.808C>T	c.(808-810)CCT>TCT	p.P270S		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	270	Helical; Name=7; (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						TGTCCAGAAGGGTATATACCA	0.373													34	96					0	0	1	0	0
CCT5	22948	broad.mit.edu	37	5	10261701	10261701	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:10261701C>T	uc003jeq.2	+	8	1194	c.1023C>T	c.(1021-1023)ATC>ATT	p.I341I	CCT5_uc011cmq.1_Silent_p.I188I|CCT5_uc003jer.2_Silent_p.I341I|CCT5_uc010its.2_Silent_p.I341I|CCT5_uc011cmr.1_Silent_p.I286I|CCT5_uc011cms.1_Silent_p.I303I|CCT5_uc011cmt.1_Silent_p.I248I	NM_012073	NP_036205	P48643	TCPE_HUMAN	chaperonin containing TCP1, subunit 5 (epsilon)	341					'de novo' posttranslational protein folding|response to virus	microtubule organizing center|nucleolus	ATP binding|unfolded protein binding			ovary(2)	2						GAGGGCGGATCGTCCCCAGGT	0.502													95	296					0	0	1	0	0
CMBL	134147	broad.mit.edu	37	5	10290816	10290816	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:10290816C>T	uc003jes.2	-	2	510	c.59G>A	c.(58-60)GGG>GAG	p.G20E		NM_138809	NP_620164	Q96DG6	CMBL_HUMAN	carboxymethylenebutenolidase	20						cytosol	hydrolase activity|protein binding			skin(1)	1						ACGGCCTAGCCCTCCATACTC	0.473													10	151					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	10973801	10973801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:10973801C>T	uc003jfa.1	-	22	3587	c.3442G>A	c.(3442-3444)GAG>AAG	p.E1148K	CTNND2_uc010itt.2_Missense_Mutation_p.E1057K|CTNND2_uc011cmy.1_Missense_Mutation_p.E811K|CTNND2_uc011cmz.1_Missense_Mutation_p.E715K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.E740K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1148					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CTGCTGGGCTCCTGTGGGACT	0.537													22	49					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	10992758	10992758	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:10992758G>A	uc003jfa.1	-	19	3261	c.3116C>T	c.(3115-3117)TCG>TTG	p.S1039L	CTNND2_uc010itt.2_Missense_Mutation_p.S948L|CTNND2_uc011cmy.1_Missense_Mutation_p.S702L|CTNND2_uc011cmz.1_Missense_Mutation_p.S606L|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.S631L	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1039					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GGTTGAAGACGAGGCTACAAA	0.542													37	129					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11022970	11022970	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:11022970C>T	uc003jfa.1	-	17	3055	c.2910G>A	c.(2908-2910)GTG>GTA	p.V970V	CTNND2_uc010itt.2_Silent_p.V879V|CTNND2_uc011cmy.1_Silent_p.V633V|CTNND2_uc011cmz.1_Silent_p.V537V|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.V562V	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	970					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TCTTGGTAATCACTTCGTGCA	0.517													31	60					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11117598	11117598	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:11117598G>A	uc003jfa.1	-	13	2386	c.2241C>T	c.(2239-2241)ATC>ATT	p.I747I	CTNND2_uc010itt.2_Silent_p.I656I|CTNND2_uc011cmy.1_Silent_p.I410I|CTNND2_uc011cmz.1_Silent_p.I314I|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.I314I	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	747	ARM 6.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GCGCAGACTGGATCACGTACA	0.507													56	122					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11117651	11117651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:11117651G>A	uc003jfa.1	-	13	2333	c.2188C>T	c.(2188-2190)CGC>TGC	p.R730C	CTNND2_uc010itt.2_Missense_Mutation_p.R639C|CTNND2_uc011cmy.1_Missense_Mutation_p.R393C|CTNND2_uc011cmz.1_Missense_Mutation_p.R297C|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.R297C	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	730	ARM 6.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						ATCCTTCTGCGGGCCTCCTCT	0.542													34	77					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11236895	11236895	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:11236895G>A	uc003jfa.1	-	10	1814	c.1669C>T	c.(1669-1671)CAG>TAG	p.Q557*	CTNND2_uc010itt.2_Nonsense_Mutation_p.Q466*|CTNND2_uc011cmy.1_Nonsense_Mutation_p.Q220*|CTNND2_uc011cmz.1_Nonsense_Mutation_p.Q124*|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Nonsense_Mutation_p.Q124*	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	557	ARM 2.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TGCAACATCTGAATCACTTCC	0.483													39	89					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11364849	11364849	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:11364849G>A	uc003jfa.1	-	8	1476	c.1331C>T	c.(1330-1332)CCT>CTT	p.P444L	CTNND2_uc010itt.2_Missense_Mutation_p.P353L|CTNND2_uc011cmy.1_Missense_Mutation_p.P107L|CTNND2_uc011cmz.1_Missense_Mutation_p.P11L|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.P11L	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	444					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TGGCGGCAGAGGGTCCCCCTG	0.642													14	26					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11364993	11364993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:11364993C>T	uc003jfa.1	-	8	1332	c.1187G>A	c.(1186-1188)CGA>CAA	p.R396Q	CTNND2_uc010itt.2_Missense_Mutation_p.R305Q|CTNND2_uc011cmy.1_Missense_Mutation_p.R59Q|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	396	ARM 1.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GTATGAGGCTCGGGAACCAGC	0.488													10	41					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11384820	11384820	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:11384820C>T	uc003jfa.1	-	7	1279	c.1134G>A	c.(1132-1134)GAG>GAA	p.E378E	CTNND2_uc010itt.2_Silent_p.E287E|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Intron|CTNND2_uc010itu.1_Intron|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	378					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TGGCATACAGCTCCTGCGAGT	0.692													7	12					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11732253	11732253	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:11732253C>T	uc003jfa.1	-	2	314	c.169G>A	c.(169-171)GAA>AAA	p.E57K	CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	57	Potential.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TCTACCTGTTCTTTGACTGAG	0.418													12	137					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13692161	13692161	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13692161G>A	uc003jfd.2	-	79	13849	c.13807C>T	c.(13807-13809)CTC>TTC	p.L4603F	DNAH5_uc003jfc.2_Missense_Mutation_p.L771F	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4603					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTGTCCTGAGATCCACAGCG	0.502									Kartagener_syndrome				32	75					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13692204	13692204	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13692204C>T	uc003jfd.2	-	79	13806	c.13764G>A	c.(13762-13764)AAG>AAA	p.K4588K	DNAH5_uc003jfc.2_Silent_p.K756K	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4588					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GAACTGGCTTCTTATAGATGG	0.478									Kartagener_syndrome				29	73					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13700828	13700828	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13700828C>T	uc003jfd.2	-	78	13686	c.13644G>A	c.(13642-13644)AGG>AGA	p.R4548R	DNAH5_uc003jfc.2_Silent_p.R716R	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4548					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTTCATGTTCCTCTTGTCCC	0.423									Kartagener_syndrome				84	186					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13701487	13701487	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13701487C>T	uc003jfd.2	-	77	13439	c.13397G>A	c.(13396-13398)AGC>AAC	p.S4466N	DNAH5_uc003jfc.2_Missense_Mutation_p.S634N	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4466					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTAAACTGGCTGTTTCTTTC	0.393									Kartagener_syndrome				18	115					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13701506	13701506	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13701506C>T	uc003jfd.2	-	77	13420	c.13378G>A	c.(13378-13380)GAA>AAA	p.E4460K	DNAH5_uc003jfc.2_Missense_Mutation_p.E628K	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4460					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTATAAGTTCAGTAAACCAG	0.393									Kartagener_syndrome				16	109					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13717553	13717553	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13717553G>A	uc003jfd.2	-	73	12618	c.12576C>T	c.(12574-12576)CAC>CAT	p.H4192H	DNAH5_uc003jfc.2_Silent_p.H360H	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4192	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGACAGTGGAGTGCAGGAAAG	0.547									Kartagener_syndrome				14	43					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13719036	13719036	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13719036C>T	uc003jfd.2	-	72	12496	c.12454G>A	c.(12454-12456)GAT>AAT	p.D4152N	DNAH5_uc003jfc.2_Missense_Mutation_p.D320N	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4152	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGTGGAGGATCGTTGGCAAAT	0.453									Kartagener_syndrome				25	77					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13735244	13735244	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13735244A>G	uc003jfd.2	-	68	11799	c.11757T>C	c.(11755-11757)ATT>ATC	p.I3919I	DNAH5_uc003jfc.2_Silent_p.I87I	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3919					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATTGACCTTTAATAAGAGTGA	0.413									Kartagener_syndrome				18	47					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13735280	13735280	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13735280C>T	uc003jfd.2	-	68	11763	c.11721G>A	c.(11719-11721)AGG>AGA	p.R3907R	DNAH5_uc003jfc.2_Silent_p.R75R	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3907					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGACTCGGTTCCTCTGGATGT	0.438									Kartagener_syndrome				8	86					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13735322	13735322	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13735322G>A	uc003jfd.2	-	68	11721	c.11679C>T	c.(11677-11679)TTC>TTT	p.F3893F	DNAH5_uc003jfc.2_Silent_p.F61F	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3893					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGGTGAACAGGAATTTGTGCT	0.433									Kartagener_syndrome				30	67					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13735969	13735969	+	Missense_Mutation	SNP	G	A	A	rs78346432		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13735969G>A	uc003jfd.2	-	67	11570	c.11528C>T	c.(11527-11529)TCG>TTG	p.S3843L	DNAH5_uc003jfc.2_Missense_Mutation_p.S11L	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3843			S -> L (in CILD3).		microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGGCGAAGCGAAGTCTGATA	0.478									Kartagener_syndrome				38	94					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13737473	13737473	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13737473G>A	uc003jfd.2	-	66	11385	c.11343C>T	c.(11341-11343)CTC>CTT	p.L3781L	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3781	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCACGACAATGAGACTTTCAT	0.453									Kartagener_syndrome				45	119					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13752396	13752396	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13752396G>A	uc003jfd.2	-	64	10917	c.10875C>T	c.(10873-10875)ATC>ATT	p.I3625I	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3625	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTAAAGACGTGATCTAGGAAC	0.423									Kartagener_syndrome				23	69					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13753547	13753547	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13753547G>A	uc003jfd.2	-	63	10709	c.10667C>T	c.(10666-10668)CCA>CTA	p.P3556L	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3556					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTCCAAATGGAATTTTCCG	0.398									Kartagener_syndrome				44	116					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13762864	13762864	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13762864G>A	uc003jfd.2	-	60	10290	c.10248C>T	c.(10246-10248)TTC>TTT	p.F3416F	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3416	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTATAGAAAAGAAGGAAGCCA	0.478									Kartagener_syndrome				24	70					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13766107	13766107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13766107C>T	uc003jfd.2	-	59	10121	c.10079G>A	c.(10078-10080)GGG>GAG	p.G3360E	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3360	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TAAAAAGTTCCCTGCAGTCAT	0.428									Kartagener_syndrome				23	142					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13769225	13769225	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13769225C>T	uc003jfd.2	-	58	9783	c.9741G>A	c.(9739-9741)ATG>ATA	p.M3247I	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3247	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTGTGCTTTCATTGTCACTT	0.418									Kartagener_syndrome				93	222					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13769648	13769648	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13769648C>T	uc003jfd.2	-	57	9724	c.9682G>A	c.(9682-9684)GAA>AAA	p.E3228K	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3228	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGCTCCTTTTCTTTCGCTTCC	0.433									Kartagener_syndrome				65	149					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13770902	13770902	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13770902G>A	uc003jfd.2	-	56	9603	c.9561C>T	c.(9559-9561)TTC>TTT	p.F3187F	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3187	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCCATATATGAACTTATAGC	0.403									Kartagener_syndrome				28	61					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13786434	13786434	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13786434C>T	uc003jfd.2	-	52	8716	c.8674G>A	c.(8674-8676)GAA>AAA	p.E2892K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2892					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTAGGTGTTTCAGCATCAGCC	0.388									Kartagener_syndrome				22	44					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13792151	13792151	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13792151G>A	uc003jfd.2	-	50	8442	c.8400C>T	c.(8398-8400)GTC>GTT	p.V2800V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2800	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCCCTGCCAGACCCGAGAAA	0.398									Kartagener_syndrome				23	41					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13793685	13793685	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13793685C>T	uc003jfd.2	-	49	8205	c.8163G>A	c.(8161-8163)AAG>AAA	p.K2721K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2721	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGAACTGCCTCTTGAGTCTTT	0.498									Kartagener_syndrome				50	123					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13793832	13793832	+	Silent	SNP	C	T	T	rs112594597		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13793832C>T	uc003jfd.2	-	49	8058	c.8016G>A	c.(8014-8016)ACG>ACA	p.T2672T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2672	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTATCTCATTCGTAACCTACA	0.423									Kartagener_syndrome				20	76					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13794063	13794063	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13794063G>A	uc003jfd.2	-	48	8034	c.7992C>T	c.(7990-7992)ATC>ATT	p.I2664I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2664	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCCACTCATTGATTATTGGCA	0.323									Kartagener_syndrome				31	58					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13794146	13794146	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13794146C>T	uc003jfd.2	-	48	7951	c.7909G>A	c.(7909-7911)GAT>AAT	p.D2637N		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2637	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATTCGTTTATCCACATAGCTC	0.358									Kartagener_syndrome				16	52					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13823467	13823467	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13823467C>T	uc003jfd.2	-	40	6634	c.6592G>A	c.(6592-6594)GAA>AAA	p.E2198K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2198					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AACAAGGGTTCATCCTCATCA	0.368									Kartagener_syndrome				27	89					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13829732	13829732	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13829732G>A	uc003jfd.2	-	38	6373	c.6331C>T	c.(6331-6333)CGT>TGT	p.R2111C		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2111	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATAATCTGACGGTCAGGCACC	0.463									Kartagener_syndrome				25	83					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13830182	13830182	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13830182C>T	uc003jfd.2	-	37	6244	c.6202G>A	c.(6202-6204)GGA>AGA	p.G2068R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2068	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACATTATCTCCATCAGTAAAG	0.378									Kartagener_syndrome				14	49					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13830199	13830199	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13830199G>A	uc003jfd.2	-	37	6227	c.6185C>T	c.(6184-6186)TCT>TTT	p.S2062F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2062	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AAAGATAAAAGACTTTTTGTG	0.383									Kartagener_syndrome				13	56					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13830851	13830851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13830851C>T	uc003jfd.2	-	36	5958	c.5916G>A	c.(5914-5916)ATG>ATA	p.M1972I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1972	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCCCCATGCTCATTCCCAGAG	0.512									Kartagener_syndrome				32	74					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13841080	13841080	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13841080C>T	uc003jfd.2	-	34	5686	c.5644G>A	c.(5644-5646)GAA>AAA	p.E1882K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1882	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCACTCGTTCCGTGGAACTC	0.398									Kartagener_syndrome				17	84					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13841134	13841134	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13841134G>A	uc003jfd.2	-	34	5632	c.5590C>T	c.(5590-5592)CTG>TTG	p.L1864L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1864	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGTAGCTCCAGGAAAGCCTGA	0.403									Kartagener_syndrome				23	73					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13841197	13841197	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13841197C>T	uc003jfd.2	-	34	5569	c.5527G>A	c.(5527-5529)GAA>AAA	p.E1843K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1843	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGGGCTTCTTCTGAATCCCGT	0.348									Kartagener_syndrome				31	57					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13841810	13841810	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13841810G>A	uc003jfd.2	-	33	5517	c.5475C>T	c.(5473-5475)TTC>TTT	p.F1825F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1825	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTGAGCAGGGAAGGATGAAA	0.269									Kartagener_syndrome				29	57					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13841872	13841872	+	Missense_Mutation	SNP	G	A	A	rs142155986	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13841872G>A	uc003jfd.2	-	33	5455	c.5413C>T	c.(5413-5415)CGC>TGC	p.R1805C		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1805	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTGCCTGGCGAATCACAAGA	0.403									Kartagener_syndrome				37	92					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13845085	13845085	+	Missense_Mutation	SNP	C	T	T	rs146830682		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13845085C>T	uc003jfd.2	-	32	5174	c.5132G>A	c.(5131-5133)CGA>CAA	p.R1711Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1711	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.R1711Q(1)		ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AAAGCACAGTCGTTTTTTCTC	0.453									Kartagener_syndrome				9	52					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13867921	13867921	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13867921G>A	uc003jfd.2	-	25	4057	c.4015C>T	c.(4015-4017)CTC>TTC	p.L1339F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1339	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAATCTTGGAGGAATACCTCC	0.448									Kartagener_syndrome				39	92					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13870878	13870878	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13870878C>T	uc003jfd.2	-	24	3874	c.3832G>A	c.(3832-3834)GAG>AAG	p.E1278K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1278	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTAGTTACCTCAATAGGTCCT	0.373									Kartagener_syndrome				12	54					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13870918	13870918	+	Silent	SNP	C	T	T	rs141079124		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13870918C>T	uc003jfd.2	-	24	3834	c.3792G>A	c.(3790-3792)AGG>AGA	p.R1264R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1264	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTGCTCCTCCCTTATTTCTT	0.338									Kartagener_syndrome				15	59					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13870920	13870920	+	Silent	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13870920T>G	uc003jfd.2	-	24	3832	c.3790A>C	c.(3790-3792)AGG>CGG	p.R1264R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1264	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGCTCCTCCCTTATTTCTTTC	0.328									Kartagener_syndrome				16	57					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13870966	13870966	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13870966C>T	uc003jfd.2	-	24	3786	c.3744G>A	c.(3742-3744)AAG>AAA	p.K1248K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1248	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CATCTAGGTCCTTAATTGGAC	0.373									Kartagener_syndrome				21	73					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13870993	13870993	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13870993G>A	uc003jfd.2	-	24	3759	c.3717C>T	c.(3715-3717)TTC>TTT	p.F1239F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1239	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTTCTTATTGAATTCTTCAA	0.398									Kartagener_syndrome				29	79					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13882840	13882840	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13882840G>A	uc003jfd.2	-	21	3301	c.3259C>T	c.(3259-3261)CAA>TAA	p.Q1087*		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1087	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CATTTACCTTGAAGTTCATTT	0.303									Kartagener_syndrome				6	46					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13885322	13885322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13885322C>T	uc003jfd.2	-	19	2801	c.2759G>A	c.(2758-2760)GGA>GAA	p.G920E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	920	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCAAAATTTCCTTCTTCTCT	0.299									Kartagener_syndrome				22	42					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13901376	13901376	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13901376C>T	uc003jfd.2	-	14	2079	c.2037G>A	c.(2035-2037)AGG>AGA	p.R679R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	679	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GAAGCCACGCCCTGTGGAAGA	0.478									Kartagener_syndrome				16	43					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13919431	13919431	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13919431C>T	uc003jfd.2	-	7	871	c.829G>A	c.(829-831)GAA>AAA	p.E277K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	277	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCATCCGCTTCCTTCAGCAGC	0.483									Kartagener_syndrome				23	274					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13920608	13920608	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13920608C>T	uc003jfd.2	-	6	821	c.779G>A	c.(778-780)TGG>TAG	p.W260*	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	260	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGTTTGATCCATACTTTCAT	0.398									Kartagener_syndrome				32	100					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13922221	13922221	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13922221C>T	uc003jfd.2	-	5	697	c.655G>A	c.(655-657)GAG>AAG	p.E219K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	219	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCACCTTCTCCTTCAGACTC	0.488									Kartagener_syndrome				11	25					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13922279	13922279	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13922279G>A	uc003jfd.2	-	5	639	c.597C>T	c.(595-597)TTC>TTT	p.F199F	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	199	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGGAGCTCAAGAACTCCTGGC	0.542									Kartagener_syndrome				17	34					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13922350	13922350	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:13922350G>A	uc003jfd.2	-	5	568	c.526C>T	c.(526-528)CTC>TTC	p.L176F	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	176	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTGGCTCTGAGAGCAGGAATG	0.552									Kartagener_syndrome				19	47					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14367010	14367010	+	Silent	SNP	C	T	T	rs141984882		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14367010C>T	uc003jff.2	+	16	2802	c.2796C>T	c.(2794-2796)GCC>GCT	p.A932A	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Silent_p.A883A|TRIO_uc003jfh.1_Silent_p.A581A	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	932	Spectrin 3.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					TGTTAAATGCCGGACTTATCA	0.552													17	92					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14368958	14368958	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14368958C>T	uc003jff.2	+	17	3022	c.3016C>T	c.(3016-3018)CGC>TGC	p.R1006C	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.R957C|TRIO_uc003jfh.1_Missense_Mutation_p.R655C	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1006					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GATGGAAGATCGCCTCAAGCT	0.532													41	98					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14465696	14465696	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14465696C>T	uc003jff.2	+	37	5716	c.5710C>T	c.(5710-5712)CCG>TCG	p.P1904S	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Missense_Mutation_p.P1553S|TRIO_uc003jfi.1_Missense_Mutation_p.P207S	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1904					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					CTCCGAAACACCGAGTGCAGC	0.517													11	97					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14492705	14492705	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14492705C>T	uc003jff.2	+	49	7668	c.7662C>T	c.(7660-7662)TCC>TCT	p.S2554S	TRIO_uc003jfg.2_RNA	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2554	SH3 2.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GCAACATCTCCACCATGTTGG	0.502													17	39					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14498703	14498703	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14498703C>T	uc003jff.2	+	53	8292	c.8286C>T	c.(8284-8286)GTC>GTT	p.V2762V	TRIO_uc003jfg.2_RNA	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2762	Ig-like C2-type.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GCATCGCTGTCAATGACATGG	0.587													42	87					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14508475	14508475	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14508475C>T	uc003jff.2	+	57	9244	c.9238C>T	c.(9238-9240)CGA>TGA	p.R3080*	TRIO_uc003jfg.2_RNA	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	3080					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GAATGATGTTCGACCTATCCG	0.522													35	105					0	0	1	0	0
FAM105A	54491	broad.mit.edu	37	5	14601461	14601461	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14601461G>A	uc003jfj.2	+	4	371	c.258G>A	c.(256-258)AGG>AGA	p.R86R		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	86										ovary(1)	1	Lung NSC(4;0.00592)					TTGGTCCAGGGAACCTCAGTG	0.398													27	77					0	0	1	0	0
FAM105A	54491	broad.mit.edu	37	5	14607558	14607558	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14607558G>A	uc003jfj.2	+	6	731	c.618G>A	c.(616-618)TTG>TTA	p.L206L		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	206										ovary(1)	1	Lung NSC(4;0.00592)					TGGAATTATTGAAAACACAGG	0.393													24	62					0	0	1	0	0
FAM105A	54491	broad.mit.edu	37	5	14610413	14610413	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14610413C>T	uc003jfj.2	+	8	1174	c.1061C>T	c.(1060-1062)CCA>CTA	p.P354L		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	354										ovary(1)	1	Lung NSC(4;0.00592)					TACCACATTCCAGTCTTTTAA	0.532													15	58					0	0	1	0	0
FAM105B	90268	broad.mit.edu	37	5	14693021	14693021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14693021C>T	uc003jfk.2	+	7	1075	c.923C>T	c.(922-924)TCC>TTC	p.S308F		NM_138348	NP_612357	Q96BN8	F105B_HUMAN	hypothetical protein LOC90268	308										ovary(2)	2	Lung NSC(4;0.00696)					TACCGGCTCTCCAAGTACAAC	0.522													35	90					0	0	1	0	0
ANKH	56172	broad.mit.edu	37	5	14711348	14711348	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14711348C>A	uc003jfm.3	-	12	1768	c.1437G>T	c.(1435-1437)GAG>GAT	p.E479D	ANKH_uc003jfl.3_Missense_Mutation_p.E192D	NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	479	Cytoplasmic (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						CTGTCACCTCCTCTGTCGGAG	0.532													90	204					3.1737e-70	3.19435e-70	1	1	0
ANKH	56172	broad.mit.edu	37	5	14711407	14711407	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14711407C>T	uc003jfm.3	-	12	1709	c.1378G>A	c.(1378-1380)GAG>AAG	p.E460K	ANKH_uc003jfl.3_Missense_Mutation_p.E173K	NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	460	Cytoplasmic (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						GACTCATTCTCCATCTTCTTT	0.532													10	163					0	0	1	0	0
ANKH	56172	broad.mit.edu	37	5	14746012	14746012	+	Silent	SNP	C	T	T	rs147231935		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14746012C>T	uc003jfm.3	-	7	1213	c.882G>A	c.(880-882)ACG>ACA	p.T294T	ANKH_uc003jfl.3_Silent_p.T7T	NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	294	Cytoplasmic (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						CACGGATTTCCGTCAACCAGC	0.522													15	57					0	0	1	0	0
ANKH	56172	broad.mit.edu	37	5	14751223	14751223	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:14751223C>T	uc003jfm.3	-	5	973	c.642G>A	c.(640-642)AAG>AAA	p.K214K		NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	214	Cytoplasmic (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						CGTGAATGTTCTTGTAGTAGC	0.562													23	66					0	0	1	0	0
FBXL7	23194	broad.mit.edu	37	5	15928546	15928546	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:15928546C>T	uc003jfn.1	+	3	1156	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	225	LRR 3.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GTTACAATATCTCCAACGAGG	0.582													18	59					0	0	1	0	0
FBXL7	23194	broad.mit.edu	37	5	15936779	15936779	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:15936779G>A	uc003jfn.1	+	4	1441	c.960G>A	c.(958-960)GTG>GTA	p.V320V		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	320	LRR 6.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GCTACCTGGTGATCTACTGCG	0.672													8	25					0	0	1	0	0
FBXL7	23194	broad.mit.edu	37	5	15936890	15936890	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:15936890C>T	uc003jfn.1	+	4	1552	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	357	LRR 7.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						ACCTGAGCATCGCGCACTGCG	0.672													6	20					0	0	1	0	0
FBXL7	23194	broad.mit.edu	37	5	15936978	15936978	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:15936978G>A	uc003jfn.1	+	4	1640	c.1159G>A	c.(1159-1161)GAG>AAG	p.E387K		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	387	LRR 9.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GAGGGGCTGCGAGGGCATCAC	0.617													7	23					0	0	1	0	0
FBXL7	23194	broad.mit.edu	37	5	15937163	15937163	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:15937163C>T	uc003jfn.1	+	4	1825	c.1344C>T	c.(1342-1344)ATC>ATT	p.I448I		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	448	LRR 11.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GCTTGCAGATCGTGGCCGCCA	0.627													4	41					0	0	1	0	0
MARCH11	441061	broad.mit.edu	37	5	16067687	16067687	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:16067687G>A	uc003jfo.2	-	4	1315	c.1102C>T	c.(1102-1104)CAG>TAG	p.Q368*	MARCH11_uc010itw.1_Nonsense_Mutation_p.Q124*	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	368						cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						TAGCCACACTGAAACCTTGGT	0.498													47	130					0	0	1	0	0
ZNF622	90441	broad.mit.edu	37	5	16463747	16463747	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:16463747G>A	uc003jfq.2	-	2	850	c.730C>T	c.(730-732)CCA>TCA	p.P244S		NM_033414	NP_219482	Q969S3	ZN622_HUMAN	zinc finger protein 622	244						cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						CCAAGGGGTGGGCCTTCCTCA	0.488													69	229					0	0	1	0	0
BASP1	10409	broad.mit.edu	37	5	17275909	17275909	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:17275909C>T	uc003jfx.2	+	2	763	c.584C>T	c.(583-585)TCC>TTC	p.S195F		NM_006317	NP_006308	P80723	BASP1_HUMAN	brain abundant, membrane attached signal protein	195					glomerular visceral epithelial cell differentiation|negative regulation of transcription, DNA-dependent	cytoplasm|cytoskeleton|growth cone|nuclear speck|plasma membrane	protein domain specific binding|transcription corepressor activity|transcription regulatory region DNA binding				0						GCGCCTAGTTCCACACCCAAG	0.642													5	40					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	17353944	17353944	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:17353944G>A	uc003jfy.2	-	1		c.785C>T			uc003jfz.2_5'Flank					full-length cDNA clone CS0DC022YF01 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).																		GGTGACCAGGGAAGTCACCCC	0.458													10	22					0	0	1	0	0
CDH18	1016	broad.mit.edu	37	5	19473345	19473345	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:19473345C>T	uc003jgc.2	-	12	2740	c.2363G>A	c.(2362-2364)AGA>AAA	p.R788K	CDH18_uc003jgd.2_Missense_Mutation_p.R788K|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	788	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CTAAGTTGTTCTTTCAGATTC	0.428													44	121					0	0	1	0	0
CDH18	1016	broad.mit.edu	37	5	19473672	19473672	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:19473672G>A	uc003jgc.2	-	12	2413	c.2036C>T	c.(2035-2037)CCT>CTT	p.P679L	CDH18_uc003jgd.2_Missense_Mutation_p.P679L|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	679	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AGCAGCAGAAGGATTCCTCAA	0.507													51	97					0	0	1	0	0
CDH18	1016	broad.mit.edu	37	5	19473712	19473712	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:19473712C>T	uc003jgc.2	-	12	2373	c.1996G>A	c.(1996-1998)GAA>AAA	p.E666K	CDH18_uc003jgd.2_Missense_Mutation_p.E666K|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	666	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TCTGTGTCTTCCTCTCCGCCT	0.507													51	145					0	0	1	0	0
CDH18	1016	broad.mit.edu	37	5	19520786	19520786	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:19520786C>T	uc003jgc.2	-	9	1869	c.1492G>A	c.(1492-1494)GAA>AAA	p.E498K	CDH18_uc003jgd.2_Missense_Mutation_p.E498K|CDH18_uc011cnm.1_Missense_Mutation_p.E498K	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	498	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TTAGAATTTTCACATACAATA	0.373													22	57					0	0	1	0	0
CDH18	1016	broad.mit.edu	37	5	19544092	19544092	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:19544092C>T	uc003jgc.2	-	8	1653	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	CDH18_uc003jgd.2_Missense_Mutation_p.E426K|CDH18_uc011cnm.1_Missense_Mutation_p.E426K	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	426	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CTGTCGTCTTCAACATTGTAG	0.343													26	33					0	0	1	0	0
CDH18	1016	broad.mit.edu	37	5	19571806	19571806	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:19571806C>T	uc003jgc.2	-	7	1512	c.1135G>A	c.(1135-1137)GAA>AAA	p.E379K	CDH18_uc003jgd.2_Missense_Mutation_p.E379K|CDH18_uc011cnm.1_Missense_Mutation_p.E379K	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	379	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AGTGGTGGTTCATCTACATCC	0.428													19	69					0	0	1	0	0
CDH18	1016	broad.mit.edu	37	5	19747261	19747261	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:19747261C>T	uc003jgc.2	-	3	690	c.313G>A	c.(313-315)GAT>AAT	p.D105N	CDH18_uc003jgd.2_Missense_Mutation_p.D105N|CDH18_uc011cnm.1_Missense_Mutation_p.D105N	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	105	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CCCGTGGTATCGTCAATGATA	0.438													28	86					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	21755884	21755884	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:21755884G>A	uc010iuc.2	-	11	2159	c.1701C>T	c.(1699-1701)CTC>CTT	p.L567L	CDH12_uc011cno.1_Silent_p.L527L|CDH12_uc003jgk.2_Silent_p.L567L|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	567	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TTACAACAGGGAGGAAATACA	0.453										HNSCC(59;0.17)			33	22					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	22078775	22078775	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:22078775C>T	uc010iuc.2	-	2	469	c.11G>A	c.(10-12)AGG>AAG	p.R4K	CDH12_uc011cno.1_Missense_Mutation_p.R4K|CDH12_uc003jgk.2_Missense_Mutation_p.R4K	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	4					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TAAACAGTTCCTTGTAAGCAT	0.463										HNSCC(59;0.17)			31	28					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23522829	23522829	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:23522829C>T	uc003jgo.2	+	8	899	c.717C>T	c.(715-717)GCC>GCT	p.A239A		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	239					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACCGTTCAGCCCTCAGTCTGC	0.572										HNSCC(3;0.000094)			11	42					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23522873	23522873	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:23522873C>T	uc003jgo.2	+	8	943	c.761C>T	c.(760-762)CCT>CTT	p.P254L		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	254	SET.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TCAGGCATCCCTCAGGCTGGG	0.582										HNSCC(3;0.000094)			5	57					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23522956	23522956	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:23522956G>A	uc003jgo.2	+	8	1026	c.844G>A	c.(844-846)GAA>AAA	p.E282K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	282	SET.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CCGAATTACAGAAGACGAAGA	0.552										HNSCC(3;0.000094)			30	104					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23526574	23526574	+	Silent	SNP	G	A	A	rs112001060		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:23526574G>A	uc003jgo.2	+	11	1559	c.1377G>A	c.(1375-1377)AGG>AGA	p.R459R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	459					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TCAAAGAAAGGTCCAAACTCT	0.468										HNSCC(3;0.000094)			10	28					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23526958	23526958	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:23526958G>A	uc003jgo.2	+	11	1943	c.1761G>A	c.(1759-1761)CGG>CGA	p.R587R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	587	C2H2-type 4.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AGTGTGGGCGGGGCTTTAGCT	0.607										HNSCC(3;0.000094)			25	87					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23527037	23527037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:23527037G>A	uc003jgo.2	+	11	2022	c.1840G>A	c.(1840-1842)GGG>AGG	p.G614R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	614	C2H2-type 5.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CAGGGAGTGTGGGCGGGGCTT	0.622										HNSCC(3;0.000094)			12	73					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23527500	23527500	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:23527500G>A	uc003jgo.2	+	11	2485	c.2303G>A	c.(2302-2304)AGG>AAG	p.R768K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	768	C2H2-type 10.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AGACACCAGAGGACACACACA	0.582										HNSCC(3;0.000094)			26	197					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24488152	24488152	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:24488152C>T	uc003jgr.1	-	12	2319	c.1987G>A	c.(1987-1989)GGA>AGA	p.G663R	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	663	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TCCTCCTCTCCACCACCCTCA	0.453										HNSCC(23;0.051)			34	95					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24488194	24488194	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:24488194C>T	uc003jgr.1	-	12	2277	c.1945G>A	c.(1945-1947)GAT>AAT	p.D649N	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	649	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TCTCTGATATCTTCTTTTGAC	0.433										HNSCC(23;0.051)			18	87					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24488233	24488233	+	Silent	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:24488233T>G	uc003jgr.1	-	12	2238	c.1906A>C	c.(1906-1908)AGA>CGA	p.R636R	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	636	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TTTCGCTGTCTTTTCAGAGCT	0.393										HNSCC(23;0.051)			24	55					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24491771	24491771	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:24491771G>A	uc003jgr.1	-	11	2122	c.1790C>T	c.(1789-1791)TCC>TTC	p.S597F	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	597	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGCACTGCAGGATTGCATGTT	0.527										HNSCC(23;0.051)			34	83					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24509770	24509770	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:24509770G>A	uc003jgr.1	-	7	1493	c.1161C>T	c.(1159-1161)TCC>TCT	p.S387S	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	387	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ACAGATAGGAGGACCTACTAA	0.393										HNSCC(23;0.051)			27	53					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24509843	24509843	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:24509843C>T	uc003jgr.1	-	7	1420	c.1088G>A	c.(1087-1089)GGA>GAA	p.G363E	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	363	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TTTAAATGGTCCTAGGTAATA	0.373										HNSCC(23;0.051)			14	57					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24511603	24511603	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:24511603G>A	uc003jgr.1	-	6	1167	c.835C>T	c.(835-837)CTT>TTT	p.L279F	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	279	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GAGGATTCAAGAACTCGAAGA	0.284										HNSCC(23;0.051)			10	44					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24537774	24537774	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:24537774C>T	uc003jgr.1	-	3	573	c.241G>A	c.(241-243)GAC>AAC	p.D81N	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	81	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TTATCTTGGTCTGAATGTAGC	0.368										HNSCC(23;0.051)			11	50					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26881391	26881391	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:26881391C>A	uc003jgs.1	-	12	2393	c.2224G>T	c.(2224-2226)GGG>TGG	p.G742W	CDH9_uc011cnv.1_Missense_Mutation_p.G335W	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	742	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.G742G(1)		ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GAATCATTCCCTTCATAGGCA	0.418													32	122					6.00712e-18	6.03799e-18	1	1	0
CDH9	1007	broad.mit.edu	37	5	26881631	26881631	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:26881631C>T	uc003jgs.1	-	12	2153	c.1984G>A	c.(1984-1986)GAA>AAA	p.E662K	CDH9_uc011cnv.1_Missense_Mutation_p.E255K	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	662	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCGCCGCCTTCATCGTTGTAG	0.438													72	129					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26885831	26885831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:26885831C>T	uc003jgs.1	-	11	1943	c.1774G>A	c.(1774-1776)GAT>AAT	p.D592N	CDH9_uc011cnv.1_Missense_Mutation_p.D185N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	592	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCTTGATTATCGCAGGCACAC	0.478													9	19					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26906074	26906074	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:26906074G>A	uc003jgs.1	-	5	974	c.805C>T	c.(805-807)CCC>TCC	p.P269S	CDH9_uc010iug.2_Missense_Mutation_p.P269S	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	269	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TTACTCTGGGGAAATCGAGGA	0.428													56	171					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26915838	26915838	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:26915838C>T	uc003jgs.1	-	3	592	c.423G>A	c.(421-423)CCG>CCA	p.P141P	CDH9_uc010iug.2_Silent_p.P141P	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	141	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						ATTCCGATTCCGGTTCCACCT	0.398													68	186					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26988280	26988280	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:26988280C>T	uc003jgs.1	-	2	330	c.161G>A	c.(160-162)GGC>GAC	p.G54D	CDH9_uc010iug.2_Missense_Mutation_p.G54D	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	54	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCACATCCAGCCACGCTTGGT	0.388													16	38					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	28927113	28927113	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:28927113C>T	uc003jgz.1	+	1		c.137C>T								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		AAGGGAGGCTCCAAGACCTCA	0.502													10	36					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31299723	31299723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:31299723C>T	uc003jhe.1	+	5	1122	c.796C>T	c.(796-798)CCC>TCC	p.P266S	CDH6_uc003jhd.1_Missense_Mutation_p.P266S	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	266	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CGACAACCCTCCCCGATTCCC	0.428													25	81					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31302255	31302255	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:31302255G>A	uc003jhe.1	+	6	1175	c.849G>A	c.(847-849)CCG>CCA	p.P283P	CDH6_uc003jhd.1_Silent_p.P283P	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	283	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CTTCTCCACCGGGGACACCAA	0.423													14	39					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31302378	31302378	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:31302378C>T	uc003jhe.1	+	6	1298	c.972C>T	c.(970-972)ACC>ACT	p.T324T	CDH6_uc003jhd.1_Silent_p.T324T	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	324	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ACCAGGAAACCCAGGAAGGGA	0.463													18	50					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31317894	31317894	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:31317894G>A	uc003jhe.1	+	11	2071	c.1745G>A	c.(1744-1746)GGG>GAG	p.G582E	CDH6_uc003jhd.1_Missense_Mutation_p.G582E	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	582	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AGCAGCACTGGGACAGTGACT	0.542													22	49					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31317934	31317934	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:31317934G>A	uc003jhe.1	+	11	2111	c.1785G>A	c.(1783-1785)GGG>GGA	p.G595G	CDH6_uc003jhd.1_Silent_p.G595G	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	595	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ACCACCACGGGAACATGCAAT	0.572													23	42					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31317955	31317955	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:31317955G>A	uc003jhe.1	+	11	2132	c.1806G>A	c.(1804-1806)GCG>GCA	p.A602A	CDH6_uc003jhd.1_Silent_p.A602A	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	602	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CCTGCCATGCGGAGGCGCTCA	0.572													19	48					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31322961	31322961	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:31322961G>A	uc003jhe.1	+	12	2245	c.1919G>A	c.(1918-1920)CGA>CAA	p.R640Q		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	640	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding	p.R640*(1)		ovary(4)|skin(2)|large_intestine(1)	7						AGGCGGCAGCGAAAAAAAGAG	0.453													30	63					0	0	1	0	0
RNASEN	29102	broad.mit.edu	37	5	31466345	31466345	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:31466345G>A	uc003jhg.2	-	18	2769	c.2410C>T	c.(2410-2412)CTA>TTA	p.L804L	RNASEN_uc003jhh.2_Silent_p.L767L|RNASEN_uc003jhi.2_Silent_p.L767L	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	804	Necessary for interaction with DGCR8 and pri-miRNA processing activity.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						CTATTTGCTAGGAGGTGGCGA	0.428													19	89					0	0	1	0	0
C5orf22	55322	broad.mit.edu	37	5	31541450	31541450	+	Silent	SNP	C	T	T	rs142007850	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:31541450C>T	uc003jhj.3	+	6	1060	c.933C>T	c.(931-933)TTC>TTT	p.F311F	C5orf22_uc011cnw.1_RNA|C5orf22_uc003jhk.3_Silent_p.F46F	NM_018356	NP_060826	Q49AR2	CE022_HUMAN	hypothetical protein LOC55322	311										ovary(2)	2						AAGCCACTTTCGCTGATTTGT	0.358													7	72					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32010529	32010529	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:32010529G>A	uc003jhl.2	+	6	1736	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K	PDZD2_uc003jhm.2_Missense_Mutation_p.E450K|PDZD2_uc011cnx.1_Missense_Mutation_p.E276K	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	450					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GACTGATAACGAAGACCAGGA	0.522													18	91					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32059435	32059435	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:32059435C>T	uc003jhl.2	+	13	2679	c.2291C>T	c.(2290-2292)TCA>TTA	p.S764L	PDZD2_uc003jhm.2_Missense_Mutation_p.S764L|PDZD2_uc011cnx.1_Missense_Mutation_p.S590L	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	764	PDZ 4.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GCTCCAGGATCAGTGGCCAAG	0.463													26	39					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32090200	32090200	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:32090200C>G	uc003jhl.2	+	20	7034	c.6646C>G	c.(6646-6648)CCA>GCA	p.P2216A	PDZD2_uc003jhm.2_Missense_Mutation_p.P2216A	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2216					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTACTTCACCCCAAGGCCAGC	0.617													62	336					0	0	1	0	0
GOLPH3	64083	broad.mit.edu	37	5	32126481	32126481	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:32126481G>A	uc003jhp.1	-	4	1019	c.734C>T	c.(733-735)GCC>GTC	p.A245V		NM_022130	NP_071413	Q9H4A6	GOLP3_HUMAN	golgi phosphoprotein 3	245					cell proliferation|positive regulation of TOR signaling cascade|regulation of mitochondrion organization	cytosol|endosome|Golgi cisterna membrane|mitochondrial intermembrane space|plasma membrane|trans-Golgi network	protein binding			ovary(1)	1						GACGTCCGAGGCATGAGCCAG	0.537													34	70					0	0	1	0	0
MTMR12	54545	broad.mit.edu	37	5	32239246	32239246	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:32239246G>A	uc003jhq.2	-	13	1375	c.1205C>T	c.(1204-1206)TCC>TTC	p.S402F	MTMR12_uc010iuk.2_Missense_Mutation_p.S402F|MTMR12_uc010iul.2_Missense_Mutation_p.S402F	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	402	Myotubularin phosphatase.					cytoplasm	phosphatase activity			ovary(1)	1						CACCAGAGAGGAAATGAGACA	0.502													14	52					0	0	1	0	0
ZFR	51663	broad.mit.edu	37	5	32415222	32415222	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:32415222G>A	uc003jhr.1	-	5	716	c.636C>T	c.(634-636)GCC>GCT	p.A212A	ZFR_uc010iun.1_Silent_p.A212A	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	212	Ala-rich.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		CTGGTTTTATGGCTGTCACTT	0.498													21	55					0	0	1	0	0
NPR3	4883	broad.mit.edu	37	5	32774912	32774912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:32774912G>A	uc003jhv.2	+	4	1376	c.1158G>A	c.(1156-1158)GGG>GGA	p.G386G	NPR3_uc010iuo.2_Silent_p.G170G|NPR3_uc011cnz.1_Silent_p.G170G|NPR3_uc003jhu.2_Silent_p.G386G	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	386	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	AGGATGGAGGGAAAATTATAC	0.443													62	114					0	0	1	0	0
C5orf23	79614	broad.mit.edu	37	5	32789541	32789541	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:32789541G>A	uc003jhw.1	+	1	597	c.34G>A	c.(34-36)GAA>AAA	p.E12K		NM_024563	NP_078839			hypothetical protein LOC79614												0						ACATTTCTCTGAAGAACCATC	0.393													49	128					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	33162505	33162505	+	RNA	SNP	C	T	T	rs146818486	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:33162505C>T	uc003jhx.2	+	1		c.240C>T								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTGTTGTACTCGTAAAACAAG	0.502													20	56					0	0	1	0	0
TARS	6897	broad.mit.edu	37	5	33467054	33467054	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:33467054C>T	uc003jhy.2	+	18	2282	c.1987C>T	c.(1987-1989)CGA>TGA	p.R663*	TARS_uc011cob.1_Nonsense_Mutation_p.R651*|TARS_uc010iup.1_Nonsense_Mutation_p.R604*|TARS_uc011coc.1_Nonsense_Mutation_p.R684*|TARS_uc003jhz.2_Nonsense_Mutation_p.R559*|TARS_uc011cod.1_Nonsense_Mutation_p.R542*	NM_152295	NP_689508	P26639	SYTC_HUMAN	threonyl-tRNA synthetase	663					threonyl-tRNA aminoacylation	cytosol	ATP binding|protein homodimerization activity|threonine-tRNA ligase activity			ovary(2)	2					L-Threonine(DB00156)	TAAAAAGATTCGAAATGCACA	0.373													28	58					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33549452	33549452	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:33549452C>T	uc003jia.1	-	21	4325	c.4162G>A	c.(4162-4164)GAG>AAG	p.E1388K	ADAMTS12_uc010iuq.1_Missense_Mutation_p.E1303K	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1388	TSP type-1 6.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CACTGAATCTCGCGTATCTTG	0.562										HNSCC(64;0.19)			19	119					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576177	33576177	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:33576177G>A	uc003jia.1	-	19	4117	c.3954C>T	c.(3952-3954)ATC>ATT	p.I1318I	ADAMTS12_uc010iuq.1_Silent_p.I1233I	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1318	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						AGTTTCCGACGATCCAGTGTG	0.453										HNSCC(64;0.19)			40	90					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576383	33576383	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:33576383G>A	uc003jia.1	-	19	3911	c.3748C>T	c.(3748-3750)CCT>TCT	p.P1250S	ADAMTS12_uc010iuq.1_Missense_Mutation_p.P1165S	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1250	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CCTCCCAGAGGGAGCAGAGTG	0.522										HNSCC(64;0.19)			48	144					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33624341	33624341	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:33624341C>T	uc003jia.1	-	14	2301	c.2138G>A	c.(2137-2139)GGA>GAA	p.G713E	ADAMTS12_uc010iuq.1_Intron	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	713	Spacer 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						ATTACCAGATCCTTCCTTCTG	0.443										HNSCC(64;0.19)			34	115					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33881335	33881335	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:33881335G>A	uc003jia.1	-	2	541	c.378C>T	c.(376-378)CTC>CTT	p.L126L	ADAMTS12_uc010iuq.1_Silent_p.L126L|ADAMTS12_uc003jib.1_Silent_p.L126L	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	126					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TAACATGGGAGAGGTTCCCAT	0.502										HNSCC(64;0.19)			28	86					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33891923	33891923	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:33891923G>A	uc003jia.1	-	1	202	c.39C>T	c.(37-39)TCC>TCT	p.S13S	ADAMTS12_uc010iuq.1_Silent_p.S13S|ADAMTS12_uc003jib.1_Silent_p.S13S	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	13					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GAGCCACCACGGAAAGGTTTG	0.522										HNSCC(64;0.19)			52	97					0	0	1	0	0
SLC45A2	51151	broad.mit.edu	37	5	33964098	33964098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:33964098G>A	uc003jid.2	-	3	678	c.586C>T	c.(586-588)CTT>TTT	p.L196F	SLC45A2_uc003jie.2_Missense_Mutation_p.L196F|SLC45A2_uc003jif.3_Intron|SLC45A2_uc011coe.1_Intron	NM_016180	NP_057264	Q9UMX9	S45A2_HUMAN	membrane-associated transporter protein isoform	196	Helical; Name=5; (Potential).				melanin biosynthetic process|response to stimulus|transmembrane transport|visual perception	integral to membrane|melanosome membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						GCACCCAAAAGGTAACCCAGG	0.458													8	28					0	0	1	0	0
C1QTNF3	114899	broad.mit.edu	37	5	34043182	34043182	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:34043182G>A	uc003jin.2	-	1	136	c.49C>T	c.(49-51)CTC>TTC	p.L17F	C1QTNF3_uc003jio.2_Missense_Mutation_p.L17F	NM_030945	NP_112207	Q9BXJ4	C1QT3_HUMAN	C1q and tumor necrosis factor related protein 3	17						collagen					0	all_lung(31;0.0207)					CAAAAAGGGAGGAAAAACAAA	0.493													54	160					0	0	1	0	0
DNAJC21	134218	broad.mit.edu	37	5	34945064	34945064	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:34945064C>T	uc003jjc.2	+	8	1303	c.1076C>T	c.(1075-1077)CCT>CTT	p.P359L	DNAJC21_uc003jjb.2_Missense_Mutation_p.P359L|DNAJC21_uc010iuu.1_Missense_Mutation_p.P243L|DNAJC21_uc003jjd.2_5'Flank	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	359	Glu-rich.				protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			TTTTCAAGACCTCAAATTGAT	0.358													41	115					0	0	1	0	0
AGXT2	64902	broad.mit.edu	37	5	35010173	35010173	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35010173C>T	uc003jjf.2	-	12	1349	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K	AGXT2_uc003jje.1_Missense_Mutation_p.E77K|AGXT2_uc011com.1_Missense_Mutation_p.E349K	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	424					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	ATTTCAAATTCATCCCGCAGC	0.438													49	100					0	0	1	0	0
AGXT2	64902	broad.mit.edu	37	5	35025869	35025869	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35025869T>C	uc003jjf.2	-	9	1041	c.962A>G	c.(961-963)GAA>GGA	p.E321G	AGXT2_uc003jje.1_5'UTR|AGXT2_uc011com.1_Missense_Mutation_p.E321G	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	321					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	GCCACTTACTTCATCTGCAAT	0.512													15	45					0	0	1	0	0
AGXT2	64902	broad.mit.edu	37	5	35033608	35033608	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35033608C>T	uc003jjf.2	-	6	711	c.632G>A	c.(631-633)GGG>GAG	p.G211E	AGXT2_uc011com.1_Missense_Mutation_p.G211E|AGXT2_uc011con.1_Missense_Mutation_p.G119E	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	211					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	CTTGTAGGTCCCTACGTTTGT	0.483													18	56					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35065373	35065373	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35065373C>T	uc003jjm.2	-	10	2217	c.1687G>A	c.(1687-1689)GAT>AAT	p.D563N	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.D462N	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	563	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GCATGTGGATCTGGCACCAAC	0.517													12	55					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35065427	35065427	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35065427C>T	uc003jjm.2	-	10	2163	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.E444K	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	545	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TTGGCATACTCCTTATTGTTC	0.478													19	75					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35065523	35065523	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35065523G>A	uc003jjm.2	-	10	2067	c.1537C>T	c.(1537-1539)CAC>TAC	p.H513Y	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.H412Y	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	513	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TTGACCTTGTGAATCTCCACA	0.502													46	90					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35065757	35065757	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35065757C>T	uc003jjm.2	-	10	1833	c.1303G>A	c.(1303-1305)GAT>AAT	p.D435N	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.D334N	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	435	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TCACACACATCAGTAATATTG	0.483													27	173					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35084740	35084740	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35084740C>T	uc003jjm.2	-	5	735	c.205G>A	c.(205-207)GAG>AAG	p.E69K	PRLR_uc003jjg.1_Missense_Mutation_p.E69K|PRLR_uc003jjh.1_Missense_Mutation_p.E69K|PRLR_uc003jji.1_5'UTR|PRLR_uc003jjj.1_Missense_Mutation_p.E69K|PRLR_uc003jjk.1_5'UTR|PRLR_uc003jjl.3_Intron|PRLR_uc010iuw.1_5'UTR	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	69	Fibronectin type-III 1.|Extracellular (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	ATGAGTGTCTCTCTGCAATAA	0.408													22	59					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35654817	35654817	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35654817G>A	uc003jjo.2	+	7	1078	c.967G>A	c.(967-969)GAA>AAA	p.E323K	SPEF2_uc003jjn.1_Missense_Mutation_p.E323K|SPEF2_uc003jjq.3_Missense_Mutation_p.E323K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	323	Potential.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AATAGCCCACGAAGCACAAGA	0.363													22	103					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35700677	35700677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35700677C>T	uc003jjo.2	+	16	2332	c.2221C>T	c.(2221-2223)CTT>TTT	p.L741F	SPEF2_uc003jjq.3_Missense_Mutation_p.L736F|SPEF2_uc003jjp.1_Missense_Mutation_p.L227F	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	741	Potential.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGAAGAAGCTCTTACAGGCTG	0.398													20	61					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35709136	35709136	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35709136C>T	uc003jjo.2	+	19	2863	c.2752C>T	c.(2752-2754)CCT>TCT	p.P918S	SPEF2_uc003jjq.3_Missense_Mutation_p.P913S|SPEF2_uc003jjp.1_Missense_Mutation_p.P404S	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	918					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCCTCCTGCTCCTCCTCCTGA	0.433													27	85					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35709163	35709163	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35709163G>A	uc003jjo.2	+	19	2890	c.2779G>A	c.(2779-2781)GAA>AAA	p.E927K	SPEF2_uc003jjq.3_Missense_Mutation_p.E922K|SPEF2_uc003jjp.1_Missense_Mutation_p.E413K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	927					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAAAGAGAAGGAAATTCATCA	0.428													8	99					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35740337	35740337	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35740337G>A	uc003jjo.2	+	23	3409	c.3298G>A	c.(3298-3300)GAA>AAA	p.E1100K	SPEF2_uc003jjp.1_Missense_Mutation_p.E586K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1100					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGATGATGAGGAAACAAAGGC	0.453													56	121					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35753829	35753829	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35753829G>A	uc003jjo.2	+	24	3545	c.3434G>A	c.(3433-3435)GGA>GAA	p.G1145E	SPEF2_uc003jjp.1_Missense_Mutation_p.G631E	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1145					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GACACTCTTGGAATGACAATG	0.512													30	155					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35771777	35771777	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35771777G>A	uc003jjo.2	+	27	3979	c.3868G>A	c.(3868-3870)GAA>AAA	p.E1290K	SPEF2_uc003jjp.1_Missense_Mutation_p.E776K|SPEF2_uc003jjr.2_5'Flank	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1290					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGACCCCAAAGAAAAATCTCC	0.398													20	31					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35774065	35774065	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35774065G>A	uc003jjo.2	+	28	4131	c.4020G>A	c.(4018-4020)AGG>AGA	p.R1340R	SPEF2_uc003jjp.1_Silent_p.R826R|SPEF2_uc003jjr.2_5'UTR	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1340					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAATCAAAAGGAAAAATGAAC	0.388													9	68					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35779419	35779419	+	Missense_Mutation	SNP	G	A	A	rs77036027	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35779419G>A	uc003jjo.2	+	30	4529	c.4418G>A	c.(4417-4419)CGA>CAA	p.R1473Q	SPEF2_uc003jjp.1_Missense_Mutation_p.R959Q|SPEF2_uc003jjr.2_5'UTR	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1473					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GACAGTCTTCGAGATCAGTTC	0.398													11	83					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35806986	35806986	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35806986G>A	uc003jjo.2	+	35	5299	c.5188G>A	c.(5188-5190)GGG>AGG	p.G1730R	SPEF2_uc003jjp.1_Missense_Mutation_p.G1216R|SPEF2_uc003jjr.2_Missense_Mutation_p.G785R	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1730					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGTGTTCAAAGGGGGAAGTGA	0.393													26	58					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35857148	35857148	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35857148C>T	uc003jjs.2	+	1	158	c.69C>T	c.(67-69)GGC>GGT	p.G23G	IL7R_uc011coo.1_Silent_p.G23G|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	23	Extracellular (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GAGAAAGTGGCTATGCTCAAA	0.318													80	166					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35874645	35874645	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35874645G>A	uc003jjs.2	+	6	889	c.800_splice	c.e6+1	p.R267_splice	IL7R_uc011coo.1_Intron|IL7R_uc011cop.1_Intron	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor						immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GGAAAAAAAGGTGACCTTCTT	0.428													26	84					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35876232	35876232	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35876232G>A	uc003jjs.2	+	8	1113	c.1024G>A	c.(1024-1026)GGG>AGG	p.G342R	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	342	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GAGGCTTGGAGGGGATGTGCA	0.488													17	41					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35876418	35876418	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35876418C>T	uc003jjs.2	+	8	1299	c.1210C>T	c.(1210-1212)CTC>TTC	p.L404F	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	404	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GTACCAGGACCTCCTGCTTAG	0.552													15	43					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35876420	35876420	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35876420C>T	uc003jjs.2	+	8	1301	c.1212C>T	c.(1210-1212)CTC>CTT	p.L404L	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	404	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			ACCAGGACCTCCTGCTTAGCC	0.547													21	34					0	0	1	0	0
CAPSL	133690	broad.mit.edu	37	5	35910131	35910131	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35910131C>T	uc003jjt.1	-	4	457	c.362G>A	c.(361-363)AGA>AAA	p.R121K	CAPSL_uc003jju.1_Missense_Mutation_p.R121K	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	121	EF-hand 3.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			GTCTAACTTTCTAAAAGCTTG	0.378													29	96					0	0	1	0	0
CAPSL	133690	broad.mit.edu	37	5	35910613	35910613	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35910613C>T	uc003jjt.1	-	3	265	c.170G>A	c.(169-171)CGA>CAA	p.R57Q	CAPSL_uc003jju.1_Missense_Mutation_p.R57Q	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	57	EF-hand 1.|1 (Potential).					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			ATCAAGGGTTCGATTATTATC	0.308													15	49					0	0	1	0	0
UGT3A1	133688	broad.mit.edu	37	5	35954365	35954365	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35954365C>T	uc003jjv.1	-	7	1668	c.1511G>A	c.(1510-1512)GGG>GAG	p.G504E	UGT3A1_uc003jjw.1_RNA	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	504	Helical; (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAGCAGCTTCCCACAAAGCCA	0.587													22	49					0	0	1	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965518	35965518	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35965518C>T	uc003jjv.1	-	4	970	c.813G>A	c.(811-813)TTG>TTA	p.L271L	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.L271L|UGT3A1_uc011cor.1_Silent_p.L237L|UGT3A1_uc003jjy.1_Silent_p.L217L	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	271	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GTTTTTCCATCAAGCCTCCAA	0.448													8	124					0	0	1	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965699	35965699	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:35965699G>A	uc003jjv.1	-	4	789	c.632C>T	c.(631-633)TCC>TTC	p.S211F	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.S211F|UGT3A1_uc011cor.1_Missense_Mutation_p.S177F|UGT3A1_uc003jjy.1_Missense_Mutation_p.S157F	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	211	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTGGCTCCTGGAGAAACTAAA	0.463													45	79					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36035837	36035837	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36035837C>T	uc003jjz.1	-	7	1628	c.1535G>A	c.(1534-1536)TGG>TAG	p.W512*	UGT3A2_uc011cos.1_Nonsense_Mutation_p.W478*|UGT3A2_uc011cot.1_Nonsense_Mutation_p.W210*	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	512	Cytoplasmic (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACGCAGCCACCAGACAGCCAT	0.587													14	53					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36036035	36036035	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36036035G>A	uc003jjz.1	-	7	1430	c.1337C>T	c.(1336-1338)TCC>TTC	p.S446F	UGT3A2_uc011cos.1_Missense_Mutation_p.S412F|UGT3A2_uc011cot.1_Missense_Mutation_p.S144F	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	446	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GAGCGGGTGGGAGCGCAGGAT	0.587													10	38					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36036043	36036043	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36036043G>A	uc003jjz.1	-	7	1422	c.1329C>T	c.(1327-1329)ATC>ATT	p.I443I	UGT3A2_uc011cos.1_Silent_p.I409I|UGT3A2_uc011cot.1_Silent_p.I141I	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	443	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGGAGCGCAGGATGACACTGG	0.577													11	38					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049324	36049324	+	Silent	SNP	G	A	A	rs148290056	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36049324G>A	uc003jjz.1	-	4	603	c.510C>T	c.(508-510)TTC>TTT	p.F170F	UGT3A2_uc011cos.1_Silent_p.F136F|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	170	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCAAAGAGCCGAATGAAGTGG	0.453													33	63					0	0	1	0	0
LMBRD2	92255	broad.mit.edu	37	5	36116684	36116684	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36116684G>A	uc003jkb.1	-	11	1729	c.1314C>T	c.(1312-1314)TTC>TTT	p.F438F		NM_001007527	NP_001007528	Q68DH5	LMBD2_HUMAN	LMBR1 domain containing 2	438	Helical; (Potential).					integral to membrane					0	all_lung(31;0.000146)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGATGGAAAGGAAGCAGGCAA	0.328													10	70					0	0	1	0	0
LMBRD2	92255	broad.mit.edu	37	5	36117840	36117840	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36117840G>A	uc003jkb.1	-	10	1714	c.1299C>T	c.(1297-1299)ATC>ATT	p.I433I		NM_001007527	NP_001007528	Q68DH5	LMBD2_HUMAN	LMBR1 domain containing 2	433	Helical; (Potential).					integral to membrane					0	all_lung(31;0.000146)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AACTGACCTCGATATAAATAT	0.333													14	24					0	0	1	0	0
RANBP3L	202151	broad.mit.edu	37	5	36253876	36253876	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36253876C>T	uc003jkh.2	-	12	1533	c.1040G>A	c.(1039-1041)GGC>GAC	p.G347D	RANBP3L_uc011cow.1_Missense_Mutation_p.G372D	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	347	RanBD1.				intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			CCTTAGACTGCCTTGATTGCG	0.393													29	76					0	0	1	0	0
RANBP3L	202151	broad.mit.edu	37	5	36271373	36271373	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36271373C>T	uc003jkh.2	-	2	625	c.132G>A	c.(130-132)AAG>AAA	p.K44K	RANBP3L_uc011cow.1_Silent_p.K44K	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	44					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			TTTGTTCTCCCTTTTCAAAAA	0.303													10	69					0	0	1	0	0
RANBP3L	202151	broad.mit.edu	37	5	36301496	36301496	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36301496C>T	uc003jkh.2	-	1	516	c.23G>A	c.(22-24)GGC>GAC	p.G8D	RANBP3L_uc011cow.1_Missense_Mutation_p.G8D	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	8					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			GTGGCTGCTGCCTTTTCTTGG	0.542													24	111					0	0	1	0	0
SLC1A3	6507	broad.mit.edu	37	5	36677252	36677252	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36677252G>A	uc003jkj.3	+	6	1302	c.826G>A	c.(826-828)GAA>AAA	p.E276K	SLC1A3_uc011cox.1_Missense_Mutation_p.E169K|SLC1A3_uc010iuy.2_Missense_Mutation_p.E276K	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	276					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	TTCTCTTAACGAAGCCATCAT	0.413													32	62					0	0	1	0	0
SLC1A3	6507	broad.mit.edu	37	5	36679919	36679919	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:36679919G>A	uc003jkj.3	+	7	1527	c.1051G>A	c.(1051-1053)GGG>AGG	p.G351R	SLC1A3_uc011cox.1_Missense_Mutation_p.G244R|SLC1A3_uc010iuy.2_Missense_Mutation_p.G351R	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	351					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	TTTTATTGGAGGGTTGCTGCA	0.483													30	58					0	0	1	0	0
NIPBL	25836	broad.mit.edu	37	5	37000603	37000603	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:37000603C>T	uc003jkl.3	+	12	3932	c.3433C>T	c.(3433-3435)CGT>TGT	p.R1145C	NIPBL_uc003jkk.3_Missense_Mutation_p.R1145C	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1145					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AGGTGGTGGTCGTTATCGAAA	0.463													18	110					0	0	1	0	0
NIPBL	25836	broad.mit.edu	37	5	37044568	37044568	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:37044568C>T	uc003jkl.3	+	35	6727	c.6228C>T	c.(6226-6228)CTC>CTT	p.L2076L	NIPBL_uc003jkk.3_Silent_p.L2076L	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2076					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TAATGAAGCTCATCATCAAAT	0.318													7	79					0	0	1	0	0
C5orf42	65250	broad.mit.edu	37	5	37120378	37120378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:37120378G>A	uc011cpa.1	-	49	9319	c.9088C>T	c.(9088-9090)CCG>TCG	p.P3030S	C5orf42_uc003jko.1_Missense_Mutation_p.P61S|C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Missense_Mutation_p.P1548S|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.P2123S	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	3030										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			ATATAACTCGGTTTGGACATA	0.358													34	58					0	0	1	0	0
C5orf42	65250	broad.mit.edu	37	5	37153991	37153991	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:37153991G>A	uc011cpa.1	-	41	8293	c.8062C>T	c.(8062-8064)CCT>TCT	p.P2688S	C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Missense_Mutation_p.P1206S|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.P1781S	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2688										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			CTTGGTGCAGGGCAAGCTGCA	0.468													17	79					0	0	1	0	0
C5orf42	65250	broad.mit.edu	37	5	37164388	37164388	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:37164388G>A	uc011cpa.1	-	37	7806	c.7575C>T	c.(7573-7575)TTC>TTT	p.F2525F	C5orf42_uc011coy.1_Silent_p.F1025F|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Silent_p.F1600F	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2525										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			AAGGAACGTCGAAGTCATCCA	0.313													34	69					0	0	1	0	0
NUP155	9631	broad.mit.edu	37	5	37299050	37299050	+	Missense_Mutation	SNP	G	A	A	rs146473381		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:37299050G>A	uc003jku.1	-	32	3831	c.3713C>T	c.(3712-3714)TCG>TTG	p.S1238L	NUP155_uc003jkt.1_Missense_Mutation_p.S1179L|NUP155_uc010iuz.1_Missense_Mutation_p.S1174L	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	1238					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CATTCTATCCGAGGAGCTCAA	0.373													5	50					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38370509	38370509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38370509G>A	uc003jlc.1	+	6	981	c.657G>A	c.(655-657)ATG>ATA	p.M219I	EGFLAM_uc003jlb.1_Missense_Mutation_p.M219I	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	219	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TGAGGGCAATGAATTCCCATG	0.562													8	43					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38406338	38406338	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38406338G>A	uc003jlc.1	+	7	1147	c.823G>A	c.(823-825)GAG>AAG	p.E275K	EGFLAM_uc003jlb.1_Missense_Mutation_p.E275K|EGFLAM_uc003jle.1_Missense_Mutation_p.E41K|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	275						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TATTTCCTTTGAGGAGGTAAC	0.428													12	33					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38407199	38407199	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38407199C>T	uc003jlc.1	+	8	1422	c.1098C>T	c.(1096-1098)GGC>GGT	p.G366G	EGFLAM_uc003jlb.1_Silent_p.G366G|EGFLAM_uc003jle.1_Silent_p.G132G|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	366	EGF-like 1.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CCTGGGGGGGCTCGCGATGCC	0.537													22	50					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38407248	38407248	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38407248G>A	uc003jlc.1	+	8	1471	c.1147G>A	c.(1147-1149)GAT>AAT	p.D383N	EGFLAM_uc003jlb.1_Missense_Mutation_p.D383N|EGFLAM_uc003jle.1_Missense_Mutation_p.D149N|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	383						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CTGCTCAGAAGGTAGGCCCTT	0.547													12	30					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38412636	38412636	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38412636C>T	uc003jlc.1	+	11	1704	c.1380C>T	c.(1378-1380)ATC>ATT	p.I460I	EGFLAM_uc003jlb.1_Silent_p.I460I|EGFLAM_uc003jle.1_Silent_p.I226I|EGFLAM_uc003jlf.1_5'UTR	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	460	Laminin G-like 1.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TTGCCATCATCGTAAGTGAGA	0.488													44	83					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38451424	38451424	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38451424G>A	uc003jlc.1	+	20	2899	c.2575G>A	c.(2575-2577)GGA>AGA	p.G859R	EGFLAM_uc003jlb.1_Missense_Mutation_p.G851R|EGFLAM_uc003jle.1_Missense_Mutation_p.G617R|EGFLAM_uc003jlf.1_Missense_Mutation_p.G217R|EGFLAM_uc003jlg.1_5'UTR	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	859	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CAGGGTGTCAGGATCAAGATC	0.473													46	170					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38451527	38451527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38451527C>T	uc003jlc.1	+	20	3002	c.2678C>T	c.(2677-2679)TCC>TTC	p.S893F	EGFLAM_uc003jlb.1_Missense_Mutation_p.S885F|EGFLAM_uc003jle.1_Missense_Mutation_p.S651F|EGFLAM_uc003jlf.1_Missense_Mutation_p.S251F|EGFLAM_uc003jlg.1_Missense_Mutation_p.S28F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	893	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GACTTCATTTCCTTGGGCCTT	0.517													37	102					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38481797	38481797	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38481797G>A	uc010ive.1	-	20	3526	c.3194C>T	c.(3193-3195)TCC>TTC	p.S1065F	LIFR_uc003jli.2_Missense_Mutation_p.S1065F	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	1065	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					AAATTGTCGGGAATTAATGGA	0.388			T	PLAG1	salivary adenoma								58	156					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38482250	38482250	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38482250C>T	uc010ive.1	-	20	3073	c.2741G>A	c.(2740-2742)CGA>CAA	p.R914Q	LIFR_uc003jli.2_Missense_Mutation_p.R914Q	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	914	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					AAATGCTGATCGAGTTTCCAG	0.388			T	PLAG1	salivary adenoma								44	93					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38484966	38484966	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38484966C>T	uc010ive.1	-	18	2834	c.2502G>A	c.(2500-2502)GTG>GTA	p.V834V	LIFR_uc003jli.2_Silent_p.V834V	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	834	Helical; (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TAATTAATCCCACAGCTGAAA	0.368			T	PLAG1	salivary adenoma								7	35					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38485983	38485983	+	Missense_Mutation	SNP	C	T	T	rs143995164		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38485983C>T	uc010ive.1	-	17	2767	c.2435G>A	c.(2434-2436)CGA>CAA	p.R812Q	LIFR_uc003jli.2_Missense_Mutation_p.R812Q	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	812	Fibronectin type-III 6.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TGTATAGGCTCGCAAGACCAG	0.433			T	PLAG1	salivary adenoma								21	63					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38493843	38493843	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38493843G>A	uc010ive.1	-	14	2262	c.1930C>T	c.(1930-1932)CTC>TTC	p.L644F	LIFR_uc003jli.2_Missense_Mutation_p.L644F	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	644	Fibronectin type-III 5.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CAGGTGAGGAGAATCCCCTTT	0.413			T	PLAG1	salivary adenoma								28	84					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38523620	38523620	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38523620G>A	uc010ive.1	-	5	794	c.462C>T	c.(460-462)TAC>TAT	p.Y154Y	LIFR_uc003jli.2_Silent_p.Y154Y	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	154	Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TCCACTTTAGGTATAATGTAG	0.363			T	PLAG1	salivary adenoma								14	79					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38876376	38876376	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38876376C>T	uc003jln.1	+	3	514	c.147C>T	c.(145-147)CAC>CAT	p.H49H	OSMR_uc003jlm.1_Silent_p.H49H	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	49	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					AGAGTTTGCACTTACAATGGA	0.393													18	83					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38884057	38884057	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38884057G>A	uc003jln.1	+	5	914	c.547G>A	c.(547-549)GGG>AGG	p.G183R	OSMR_uc003jlm.1_Missense_Mutation_p.G183R	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	183	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TTATTTGGAAGGGAAACAGAT	0.363													28	106					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38886150	38886150	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38886150G>A	uc003jln.1	+	7	1216	c.849G>A	c.(847-849)GGG>GGA	p.G283G	OSMR_uc003jlm.1_Silent_p.G283G	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	283	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GATTTTCTGGGGAAAAGAAAC	0.333													22	43					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38924684	38924684	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38924684G>A	uc003jln.1	+	14	2398	c.2031G>A	c.(2029-2031)AAG>AAA	p.K677K	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	677	Fibronectin type-III 4.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GATTTGAAAAGGCAGTTCTTT	0.343													43	115					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38925448	38925448	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38925448G>A	uc003jln.1	+	15	2554	c.2187G>A	c.(2185-2187)ACG>ACA	p.T729T	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	729	Fibronectin type-III 4.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CTACGTTCACGAAGGTCACGA	0.433													11	114					0	0	1	0	0
RICTOR	253260	broad.mit.edu	37	5	38950815	38950815	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38950815G>A	uc003jlp.2	-	31	3159	c.3135C>T	c.(3133-3135)TTC>TTT	p.F1045F	RICTOR_uc003jlo.2_Silent_p.F1045F|RICTOR_uc010ivf.2_Silent_p.F760F	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	1045	Ser-rich.				actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					CCTCCAATATGAACATACCTA	0.333													29	66					0	0	1	0	0
RICTOR	253260	broad.mit.edu	37	5	38963059	38963059	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38963059G>A	uc003jlp.2	-	17	1509	c.1485C>T	c.(1483-1485)GAC>GAT	p.D495D	RICTOR_uc003jlo.2_Silent_p.D495D|RICTOR_uc010ivf.2_Silent_p.D210D	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	495					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					GAATAATGTGGTCTAAATGAA	0.393													27	86					0	0	1	0	0
RICTOR	253260	broad.mit.edu	37	5	38967280	38967280	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:38967280G>A	uc003jlp.2	-	14	1225	c.1201C>T	c.(1201-1203)CGT>TGT	p.R401C	RICTOR_uc003jlo.2_Missense_Mutation_p.R401C|RICTOR_uc010ivf.2_Missense_Mutation_p.R116C	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	401					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					AGTCCATTACGAATAAATGCA	0.269													85	202					0	0	1	0	0
FYB	2533	broad.mit.edu	37	5	39134430	39134430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:39134430G>A	uc003jls.2	-	8	1764	c.1697C>T	c.(1696-1698)GCT>GTT	p.A566V	FYB_uc003jlt.2_Missense_Mutation_p.A566V|FYB_uc003jlu.2_Missense_Mutation_p.A566V|FYB_uc011cpl.1_Missense_Mutation_p.A576V	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	566	SH3.				cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			AATCTCTACAGCAGTTGTTTT	0.323													14	40					0	0	1	0	0
FYB	2533	broad.mit.edu	37	5	39202124	39202124	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:39202124G>A	uc003jls.2	-	1	1006	c.939C>T	c.(937-939)TTC>TTT	p.F313F	FYB_uc003jlt.2_Silent_p.F313F|FYB_uc003jlu.2_Silent_p.F313F|FYB_uc011cpl.1_Silent_p.F323F	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	313					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			GGGCCTTAGGGAACCTGGCAG	0.498													27	67					0	0	1	0	0
FYB	2533	broad.mit.edu	37	5	39202753	39202753	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:39202753C>T	uc003jls.2	-	1	377	c.310G>A	c.(310-312)GAG>AAG	p.E104K	FYB_uc003jlt.2_Missense_Mutation_p.E104K|FYB_uc003jlu.2_Missense_Mutation_p.E104K|FYB_uc011cpl.1_Missense_Mutation_p.E114K	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	104					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			ACTTTCGCCTCGGGGTCTCTG	0.542													14	35					0	0	1	0	0
C9	735	broad.mit.edu	37	5	39316095	39316095	+	Missense_Mutation	SNP	C	T	T	rs148389506		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:39316095C>T	uc003jlv.3	-	6	741	c.652G>A	c.(652-654)GAA>AAA	p.E218K		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	218	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			ATTTGTTCTTCGTAATGTTCG	0.303													15	43					0	0	1	0	0
C9	735	broad.mit.edu	37	5	39331857	39331857	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:39331857C>T	uc003jlv.3	-	5	625	c.536G>A	c.(535-537)GGA>GAA	p.G179E		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	179	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			GTTACAGAGTCCATTGTAGAA	0.438													48	147					0	0	1	0	0
C9	735	broad.mit.edu	37	5	39331902	39331902	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:39331902C>T	uc003jlv.3	-	5	580	c.491G>A	c.(490-492)GGG>GAG	p.G164E		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	164	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			GGGATCCATCCCTAAAATGTT	0.458													12	165					0	0	1	0	0
DAB2	1601	broad.mit.edu	37	5	39377166	39377166	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:39377166G>A	uc003jlx.2	-	12	2254	c.1723C>T	c.(1723-1725)CCT>TCT	p.P575S	DAB2_uc003jlw.2_Missense_Mutation_p.P554S	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	575					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GATGCAGAAGGGCCCCAGACA	0.532											OREG0016586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	59					0	0	1	0	0
DAB2	1601	broad.mit.edu	37	5	39382856	39382857	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:39382856_39382857GG>AA	uc003jlx.2	-	10	1735_1736	c.1204_1205CC>TT	c.(1204-1206)CCT>TTT	p.P402F	DAB2_uc003jlw.2_Missense_Mutation_p.P381F	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	402					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			TCCTTTGGGAGGGCTTCCCACA	0.505													30	89					0	0	1	0	0
DAB2	1601	broad.mit.edu	37	5	39394370	39394370	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:39394370G>A	uc003jlx.2	-	2	584	c.53C>T	c.(52-54)GCC>GTC	p.A18V	DAB2_uc003jlw.2_Missense_Mutation_p.A18V	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	18					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			TTTTGGTGCGGCCTGTTGGTC	0.493													31	59					0	0	1	0	0
CARD6	84674	broad.mit.edu	37	5	40852889	40852889	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:40852889C>T	uc003jmg.2	+	3	1530	c.1455C>T	c.(1453-1455)ATC>ATT	p.I485I		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	485					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						TACACAAAATCTTTCTTCATC	0.443													18	72					0	0	1	0	0
CARD6	84674	broad.mit.edu	37	5	40853444	40853444	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:40853444C>T	uc003jmg.2	+	3	2085	c.2010C>T	c.(2008-2010)TCC>TCT	p.S670S		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	670					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						TTCAAGTTTCCTCTGGAGAAA	0.493													53	131					0	0	1	0	0
CARD6	84674	broad.mit.edu	37	5	40854284	40854284	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:40854284C>T	uc003jmg.2	+	3	2925	c.2850C>T	c.(2848-2850)TCC>TCT	p.S950S		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	950					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CCAACCCATCCACAGTCAAAC	0.498													88	210					0	0	1	0	0
CARD6	84674	broad.mit.edu	37	5	40854424	40854424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:40854424C>T	uc003jmg.2	+	3	3065	c.2990C>T	c.(2989-2991)CCC>CTC	p.P997L		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	997	Pro-rich.				apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CCAAGCCAGCCCTGGCCTCCC	0.527													125	343					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40964869	40964869	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:40964869G>A	uc003jmh.2	+	14	1890	c.1776G>A	c.(1774-1776)GGG>GGA	p.G592G	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	592	Sushi 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				TTCCTGTGGGGAAAAATGTAG	0.368													27	65					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41004453	41004453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41004453C>T	uc003jmj.3	-	37	4679	c.4189G>A	c.(4189-4191)GAA>AAA	p.E1397K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E952K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1397	HEAT 15.						binding			ovary(6)|central_nervous_system(2)	8						CTTACATCTTCAAAGAAGGTC	0.398													50	96					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41004526	41004526	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41004526G>A	uc003jmj.3	-	37	4606	c.4116C>T	c.(4114-4116)ATC>ATT	p.I1372I	HEATR7B2_uc003jmi.3_Silent_p.I927I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1372	HEAT 15.						binding	p.I1372T(1)		ovary(6)|central_nervous_system(2)	8						GCAGCTCCAGGATTTTTTTTA	0.438													36	114					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41004579	41004579	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41004579G>A	uc003jmj.3	-	37	4553	c.4063C>T	c.(4063-4065)CAC>TAC	p.H1355Y	HEATR7B2_uc003jmi.3_Missense_Mutation_p.H910Y	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1355							binding			ovary(6)|central_nervous_system(2)	8						CGAGCTAGGTGATACAGGCCT	0.403													28	64					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41008721	41008721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41008721G>A	uc003jmj.3	-	33	4085	c.3595C>T	c.(3595-3597)CCA>TCA	p.P1199S	HEATR7B2_uc003jmi.3_Missense_Mutation_p.P754S	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1199							binding			ovary(6)|central_nervous_system(2)	8						CAGGGGTCTGGGATCTGCTGC	0.567													26	47					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41009435	41009435	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41009435C>T	uc003jmj.3	-	32	3857	c.3367G>A	c.(3367-3369)GAC>AAC	p.D1123N	HEATR7B2_uc003jmi.3_Missense_Mutation_p.D678N	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1123	HEAT 12.						binding			ovary(6)|central_nervous_system(2)	8						TCCAGTTTGTCTATTAAGGCT	0.507													29	78					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41012789	41012789	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41012789C>T	uc003jmj.3	-	30	3521	c.3031G>A	c.(3031-3033)GAA>AAA	p.E1011K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E566K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1011							binding			ovary(6)|central_nervous_system(2)	8						TCCAGCATTTCCTCTAGGAAC	0.458													25	81					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41015551	41015551	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41015551C>T	uc003jmj.3	-	29	3404	c.2914G>A	c.(2914-2916)GGT>AGT	p.G972S	HEATR7B2_uc003jmi.3_Missense_Mutation_p.G527S	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	972	HEAT 10.						binding			ovary(6)|central_nervous_system(2)	8						TCCTGCAAACCCTGCAGTCTT	0.413													19	53					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41019027	41019027	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41019027C>T	uc003jmj.3	-	25	3025	c.2535G>A	c.(2533-2535)CTG>CTA	p.L845L	HEATR7B2_uc003jmi.3_Silent_p.L400L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	845							binding			ovary(6)|central_nervous_system(2)	8						CTTCACTTTTCAGATTTTCCA	0.473													13	30					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41038970	41038970	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41038970C>T	uc003jmj.3	-	21	2572	c.2082G>A	c.(2080-2082)AAG>AAA	p.K694K	HEATR7B2_uc003jmi.3_Silent_p.K249K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	694	HEAT 8.						binding			ovary(6)|central_nervous_system(2)	8						TGGTCAGGCTCTTTTTCCCAG	0.433													24	66					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41045878	41045878	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41045878C>T	uc003jmj.3	-	18	2296	c.1806G>A	c.(1804-1806)ATG>ATA	p.M602I	HEATR7B2_uc003jmi.3_Missense_Mutation_p.M157I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	602	HEAT 7.						binding			ovary(6)|central_nervous_system(2)	8						TGTAACTGCCCATTTGCTGTT	0.353													56	167					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41142988	41142988	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41142988C>T	uc003jmk.2	-	18	2954	c.2744G>A	c.(2743-2745)GGA>GAA	p.G915E	C6_uc003jml.1_Missense_Mutation_p.G915E	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	915	Complement control factor I module 2.|C5b-binding domain.|Kazal-like 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TCTTATAGTTCCCACTTCACA	0.438													30	72					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41143071	41143071	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41143071C>T	uc003jmk.2	-	18	2871	c.2661G>A	c.(2659-2661)CAG>CAA	p.Q887Q	C6_uc003jml.1_Silent_p.Q887Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	887	Complement control factor I module 2.|C5b-binding domain.|Kazal-like 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CCTTGAAGCACTGTGGGGGCA	0.433													25	51					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41153949	41153949	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41153949C>T	uc003jmk.2	-	15	2463	c.2253G>A	c.(2251-2253)TGG>TGA	p.W751*	C6_uc003jml.1_Nonsense_Mutation_p.W751*	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	751	C5b-binding domain.|Sushi 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TGGGTGGTGTCCAGGAATTCC	0.473													9	64					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41159280	41159280	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41159280C>T	uc003jmk.2	-	12	1970	c.1760G>A	c.(1759-1761)CGA>CAA	p.R587Q	C6_uc003jml.1_Missense_Mutation_p.R587Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	587	TSP type-1 3.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATTGCATTCTCGGGTTCTCGA	0.493													32	95					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41160355	41160355	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41160355G>A	uc003jmk.2	-	11	1783	c.1573C>T	c.(1573-1575)CCA>TCA	p.P525S	C6_uc003jml.1_Missense_Mutation_p.P525S	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	525	EGF-like.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTAGGGCATGGAGCACACTGG	0.507													45	126					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41161795	41161795	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41161795C>T	uc003jmk.2	-	10	1668	c.1458G>A	c.(1456-1458)GAG>GAA	p.E486E	C6_uc003jml.1_Silent_p.E486E	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	486	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTACTCTTACCTCAAAGTCAA	0.398													25	92					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41161881	41161881	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41161881C>T	uc003jmk.2	-	10	1582	c.1372G>A	c.(1372-1374)GAG>AAG	p.E458K	C6_uc003jml.1_Missense_Mutation_p.E458K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	458	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CTCCCTTTCTCCCATGCCAAA	0.428													27	86					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41161948	41161948	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41161948C>T	uc003jmk.2	-	10	1515	c.1305G>A	c.(1303-1305)CAG>CAA	p.Q435Q	C6_uc003jml.1_Silent_p.Q435Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	435	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TCTCTGCTCCCTGTATAAATG	0.398													29	65					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41181551	41181551	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41181551G>A	uc003jmk.2	-	7	1047	c.837C>T	c.(835-837)TTC>TTT	p.F279F	C6_uc003jml.1_Silent_p.F279F	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	279	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTGGTACACTGAAAGAGCTCC	0.368													38	78					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41181646	41181646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41181646C>T	uc003jmk.2	-	7	952	c.742G>A	c.(742-744)GAT>AAT	p.D248N	C6_uc003jml.1_Missense_Mutation_p.D248N	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	248	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTCAAGTCATCTTCTGCAGTT	0.348													14	53					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41203238	41203238	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41203238C>T	uc003jmk.2	-	2	305	c.95G>A	c.(94-96)TGG>TAG	p.W32*	C6_uc003jml.1_Nonsense_Mutation_p.W32*	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	32	TSP type-1 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GCAGCTGGTCCACTGAGTCCA	0.507													22	244					0	0	1	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382208	41382208	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41382208C>T	uc003jmm.1	-	2	634	c.532G>A	c.(532-534)GAA>AAA	p.E178K		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	178	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						AAACTAACTTCCTGGGCAAAA	0.448													17	180					0	0	1	0	0
FBXO4	26272	broad.mit.edu	37	5	41929924	41929924	+	Missense_Mutation	SNP	C	T	T	rs139473757		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:41929924C>T	uc003jmq.2	+	3	607	c.551C>T	c.(550-552)CCA>CTA	p.P184L	FBXO4_uc003jmp.2_Missense_Mutation_p.P184L|FBXO4_uc003jmr.2_Missense_Mutation_p.P184L	NM_012176	NP_036308	Q9UKT5	FBX4_HUMAN	F-box only protein 4 isoform 1	184					positive regulation of protein ubiquitination|protein polyubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|telomere maintenance|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding|protein homodimerization activity|ubiquitin-protein ligase activity			liver(1)	1		Lung NSC(810;4.15e-05)|Breast(839;0.00093)|Ovarian(839;0.00965)|Myeloproliferative disorder(839;0.0255)|all_neural(839;0.0604)				ATGTTTGGACCAGGTTTGGAA	0.433													65	175					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42711363	42711363	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:42711363G>A	uc003jmt.2	+	7	716	c.673G>A	c.(673-675)GAA>AAA	p.E225K	GHR_uc011cpq.1_Missense_Mutation_p.E38K	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	225	Extracellular (Potential).|Fibronectin type-III.				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AGTGGATAAGGAATATGAAGT	0.398													26	171					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42718224	42718224	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:42718224G>A	uc003jmt.2	+	9	988	c.945_splice	c.e9+1	p.K315_splice	GHR_uc011cpq.1_Splice_Site_p.K128_splice	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor						2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TCTCCTCAAGGTAACTAATAA	0.328													29	66					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42719313	42719313	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:42719313C>T	uc003jmt.2	+	10	1747	c.1704C>T	c.(1702-1704)ACC>ACT	p.T568T	GHR_uc011cpq.1_Silent_p.T381T	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	568	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TTTACATCACCACAGAAAGCC	0.488													9	32					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42719404	42719404	+	Missense_Mutation	SNP	C	T	T	rs144782781		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:42719404C>T	uc003jmt.2	+	10	1838	c.1795C>T	c.(1795-1797)CAT>TAT	p.H599Y	GHR_uc011cpq.1_Missense_Mutation_p.H412Y	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	599	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TACCTCCATTCATATAGTACA	0.512													14	44					0	0	1	0	0
SEPP1	6414	broad.mit.edu	37	5	42807045	42807045	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:42807045G>A	uc011cps.1	-	4		c.557C>T			SEPP1_uc011cpt.1_RNA|SEPP1_uc011cpu.1_RNA|SEPP1_uc011cpv.1_RNA|SEPP1_uc003jna.2_RNA			P49908	SEPP1_HUMAN	Homo sapiens cDNA FLJ37321 fis, clone BRAMY2018122.						response to oxidative stress	extracellular region	selenium binding				0						AAAGAGTCCAGACATCTGTTT	0.323													21	54					0	0	1	0	0
SEPP1	6414	broad.mit.edu	37	5	42807211	42807211	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:42807211C>T	uc011cps.1	-	4		c.392_splice	c.e4-1		SEPP1_uc011cpt.1_Splice_Site|SEPP1_uc011cpu.1_Splice_Site|SEPP1_uc011cpv.1_Splice_Site|SEPP1_uc003jna.2_Splice_Site			P49908	SEPP1_HUMAN	Homo sapiens cDNA FLJ37321 fis, clone BRAMY2018122.						response to oxidative stress	extracellular region	selenium binding				0						GTCTTCTAATCTAAAATATTT	0.289													18	41					0	0	1	0	0
MGC42105	167359	broad.mit.edu	37	5	43246021	43246021	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:43246021C>T	uc003jno.2	+	2	1025	c.144C>T	c.(142-144)TTC>TTT	p.F48F		NM_153361	NP_699192	Q8IY84	NIM1_HUMAN	serine/threonine-protein kinase NIM1	48							ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|stomach(1)|large_intestine(1)|breast(1)	9						TGACGCCCTTCGAGAAACTGA	0.582													22	114					0	0	1	0	0
MGC42105	167359	broad.mit.edu	37	5	43280253	43280253	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:43280253G>A	uc003jno.2	+	4	1614	c.733G>A	c.(733-735)GAG>AAG	p.E245K		NM_153361	NP_699192	Q8IY84	NIM1_HUMAN	serine/threonine-protein kinase NIM1	245	Protein kinase.						ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|stomach(1)|large_intestine(1)|breast(1)	9						CTTCCGGGACGAGCACTACAT	0.527													34	79					0	0	1	0	0
HMGCS1	3157	broad.mit.edu	37	5	43298724	43298724	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:43298724G>A	uc003jnr.3	-	3	551	c.344C>T	c.(343-345)TCT>TTT	p.S115F	HMGCS1_uc003jnq.3_Missense_Mutation_p.S115F	NM_001098272	NP_001091742	Q01581	HMCS1_HUMAN	hydroxymethylglutaryl-CoA synthase 1	115					cholesterol biosynthetic process|isoprenoid biosynthetic process	cytosol|soluble fraction	hydroxymethylglutaryl-CoA synthase activity				0						TGTATTCCCAGACTCTTCAAA	0.438													42	104					0	0	1	0	0
CCL28	56477	broad.mit.edu	37	5	43412406	43412406	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:43412406C>T	uc003jnu.2	-	1	83	c.13G>A	c.(13-15)GGA>AGA	p.G5R	CCL28_uc003jns.2_RNA|CCL28_uc003jnt.2_RNA	NM_148672	NP_683513	Q9NRJ3	CCL28_HUMAN	chemokine (C-C motif) ligand 28 precursor	5					chemotaxis|immune response	extracellular space	chemokine activity			ovary(1)|kidney(1)	2						ATGGCGAGTCCTCTCTGCTGC	0.572													7	40					0	0	1	0	0
C5orf28	64417	broad.mit.edu	37	5	43446355	43446355	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:43446355G>A	uc003jny.2	-	3	760	c.617C>T	c.(616-618)TCT>TTT	p.S206F	C5orf28_uc003jnv.3_Missense_Mutation_p.S206F|C5orf28_uc003jnx.2_Missense_Mutation_p.S206F	NM_022483	NP_071928	Q0VDI3	CE028_HUMAN	hypothetical protein LOC64417	206						integral to membrane					0	Lung NSC(6;2.07e-05)					ATGTTTTGAAGACATCATTTG	0.368													12	68					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45262033	45262033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:45262033G>A	uc003jok.2	-	8	2688	c.2663C>T	c.(2662-2664)TCA>TTA	p.S888L		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	888	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TCATAAATTTGAAGCAAATCG	0.438													37	173					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45303824	45303824	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:45303824C>T	uc003jok.2	-	6	1520	c.1495G>A	c.(1495-1497)GGA>AGA	p.G499R		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	499	cAMP.|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						ATATAATCTCCAGGTTGAAAC	0.408													33	135					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45461956	45461956	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:45461956C>T	uc003jok.2	-	3	1028	c.1003G>A	c.(1003-1005)GAA>AAA	p.E335K		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	335	Extracellular (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						ACAACCATTTCATTTAAAGAC	0.398													15	33					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45645491	45645491	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:45645491C>T	uc003jok.2	-	2	670	c.645G>A	c.(643-645)ATG>ATA	p.M215I		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	215	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TTAAATAATTCATCTTGATCA	0.368													16	59					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45645535	45645535	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:45645535C>T	uc003jok.2	-	2	626	c.601G>A	c.(601-603)GAA>AAA	p.E201K		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	201	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GAACTGTCTTCATTGACAGTC	0.388													27	77					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45645662	45645662	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:45645662G>A	uc003jok.2	-	2	499	c.474C>T	c.(472-474)GTC>GTT	p.V158V		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	158	Helical; Name=Segment S1; (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CTGGTATGATGACTAGATTTC	0.318													30	66					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45695845	45695845	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:45695845C>T	uc003jok.2	-	1	376	c.351G>A	c.(349-351)CAG>CAA	p.Q117Q		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	117	Involved in subunit assembly (By similarity).|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CCACCGCCTTCTGGCTCCCAA	0.602													15	59					0	0	1	0	0
EMB	133418	broad.mit.edu	37	5	49699234	49699234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:49699234C>T	uc003jom.2	-	6	904	c.655G>A	c.(655-657)GAA>AAA	p.E219K	EMB_uc010ivq.2_Missense_Mutation_p.E13K|EMB_uc003jol.2_Missense_Mutation_p.E150K|EMB_uc011cpy.1_Missense_Mutation_p.E169K|EMB_uc010ivr.2_Missense_Mutation_p.E165K	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	219	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				AGCTTTGTTTCGTTAGCATAT	0.378													10	65					0	0	1	0	0
EMB	133418	broad.mit.edu	37	5	49701640	49701640	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:49701640C>T	uc003jom.2	-	5	768	c.519G>A	c.(517-519)GGG>GGA	p.G173G	EMB_uc010ivq.2_5'Flank|EMB_uc003jol.2_Silent_p.G104G|EMB_uc011cpy.1_Silent_p.G123G|EMB_uc010ivr.2_Silent_p.G119G	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	173	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				CAGTAGAATCCCCTACGTAAG	0.348													32	53					0	0	1	0	0
EMB	133418	broad.mit.edu	37	5	49706729	49706729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:49706729C>T	uc003jom.2	-	4	703	c.454G>A	c.(454-456)GGA>AGA	p.G152R	EMB_uc003jol.2_Missense_Mutation_p.G83R|EMB_uc011cpy.1_Missense_Mutation_p.G102R|EMB_uc010ivr.2_Missense_Mutation_p.G98R	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	152	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				TTAAATGTTCCCCTTTGTTCC	0.284													4	51					0	0	1	0	0
PARP8	79668	broad.mit.edu	37	5	50055509	50055509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:50055509G>A	uc003jon.3	+	5	399	c.217G>A	c.(217-219)GAA>AAA	p.E73K	PARP8_uc011cpz.1_Intron|PARP8_uc003joo.2_Missense_Mutation_p.E73K|PARP8_uc003jop.2_Missense_Mutation_p.E73K	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	73						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				AGAGAATGATGAAGATGTGCT	0.244													16	85					0	0	1	0	0
PARP8	79668	broad.mit.edu	37	5	50056163	50056163	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:50056163C>T	uc003jon.3	+	6	494	c.312C>T	c.(310-312)TCC>TCT	p.S104S	PARP8_uc011cpz.1_Intron|PARP8_uc003joo.2_Silent_p.S104S|PARP8_uc003jop.2_Silent_p.S104S	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	104						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				GTTGCTTATCCATAAAATCCA	0.234													8	44					0	0	1	0	0
PARP8	79668	broad.mit.edu	37	5	50058997	50058997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:50058997G>A	uc003jon.3	+	8	621	c.439G>A	c.(439-441)GAA>AAA	p.E147K	PARP8_uc011cpz.1_Missense_Mutation_p.E39K|PARP8_uc003joo.2_Missense_Mutation_p.E147K|PARP8_uc003jop.2_Missense_Mutation_p.E147K	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	147						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				CTATGATGGGGAACTGCACAA	0.418													11	40					0	0	1	0	0
PARP8	79668	broad.mit.edu	37	5	50090791	50090791	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:50090791C>T	uc003jon.3	+	13	1150	c.968C>T	c.(967-969)TCC>TTC	p.S323F	PARP8_uc011cpz.1_Missense_Mutation_p.S215F|PARP8_uc003joo.2_Missense_Mutation_p.S323F|PARP8_uc003jop.2_Missense_Mutation_p.S323F	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	323						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				AGGACTTGTTCCAGCACAGTC	0.527													20	64					0	0	1	0	0
PARP8	79668	broad.mit.edu	37	5	50090851	50090851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:50090851C>T	uc003jon.3	+	13	1210	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F	PARP8_uc011cpz.1_Missense_Mutation_p.S235F|PARP8_uc003joo.2_Missense_Mutation_p.S343F|PARP8_uc003jop.2_Missense_Mutation_p.S343F	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	343						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TTTGGCCGCTCCTTGTCCAGC	0.517													29	85					0	0	1	0	0
PARP8	79668	broad.mit.edu	37	5	50111267	50111267	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:50111267C>T	uc003jon.3	+	16	1759	c.1577C>T	c.(1576-1578)CCT>CTT	p.P526L	PARP8_uc011cpz.1_Missense_Mutation_p.P418L|PARP8_uc003joo.2_Missense_Mutation_p.P526L|PARP8_uc003jop.2_Missense_Mutation_p.P526L	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	526						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				CTTTTGTAGCCTACCGTATGT	0.358													14	59					0	0	1	0	0
PARP8	79668	broad.mit.edu	37	5	50118201	50118201	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:50118201G>A	uc003jon.3	+	18	2009	c.1827G>A	c.(1825-1827)CTG>CTA	p.L609L	PARP8_uc011cpz.1_Silent_p.L501L|PARP8_uc003joo.2_Silent_p.L609L|PARP8_uc003jop.2_Silent_p.L567L	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	609						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TGAAAGCACTGGATAGCATAA	0.323													43	103					0	0	1	0	0
ISL1	3670	broad.mit.edu	37	5	50679518	50679518	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:50679518G>A	uc003jor.2	+	1	561	c.13G>A	c.(13-15)GGA>AGA	p.G5R	uc003joq.1_5'Flank	NM_002202	NP_002193	P61371	ISL1_HUMAN	islet-1	5					generation of precursor metabolites and energy|multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3		Lung NSC(810;0.000845)|Breast(144;0.0411)				GGGAGACATGGGAGATCCACC	0.522													20	54					0	0	1	0	0
PELO	53918	broad.mit.edu	37	5	52096834	52096834	+	Silent	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52096834A>T	uc003jos.2	+	2	1591	c.606A>T	c.(604-606)GTA>GTT	p.V202V	ITGA1_uc003jov.2_Intron|ITGA1_uc003jou.2_Intron|PELO_uc003jot.1_Intron	NM_015946	NP_057030	Q9BRX2	PELO_HUMAN	pelota homolog	202					cell cycle|cell division|translation	cytoplasm|nucleus	endonuclease activity|metal ion binding|protein binding				0		Lung NSC(810;4.94e-05)|Breast(144;0.0848)				TTGATGTTGTAAAGTGCATCC	0.517													41	78					0	0	1	0	0
ITGA1	3672	broad.mit.edu	37	5	52177838	52177838	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52177838G>A	uc003jou.2	+	7	810	c.758G>A	c.(757-759)GGA>GAA	p.G253E	ITGA1_uc003jov.2_RNA	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	253	Extracellular (Potential).|VWFA.				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				ACAGCTCTTGGAATAGACACA	0.378													5	27					0	0	1	0	0
ITGA1	3672	broad.mit.edu	37	5	52211401	52211401	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52211401C>T	uc003jou.2	+	15	2017	c.1965C>T	c.(1963-1965)GGC>GGT	p.G655G	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Silent_p.G186G	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	655	Extracellular (Potential).|FG-GAP 7.				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				CTATTGGGGGCCTTGGTGGTG	0.468													62	114					0	0	1	0	0
ITGA1	3672	broad.mit.edu	37	5	52216173	52216173	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52216173C>T	uc003jou.2	+	17	2219	c.2167C>T	c.(2167-2169)CGT>TGT	p.R723C	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Missense_Mutation_p.R254C	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	723	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				TTTGCAGTACCGTGTCACCCT	0.299													11	47					0	0	1	0	0
ITGA1	3672	broad.mit.edu	37	5	52240817	52240817	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52240817G>A	uc003jou.2	+	27	3382	c.3330G>A	c.(3328-3330)CGG>CGA	p.R1110R	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Silent_p.R641R	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	1110	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				GAGAACTTCGGAGTGAAAATG	0.323													20	175					0	0	1	0	0
ITGA2	3673	broad.mit.edu	37	5	52353881	52353881	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52353881C>T	uc003joy.2	+	10	1266	c.1123C>T	c.(1123-1125)CAG>TAG	p.Q375*	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Nonsense_Mutation_p.Q299*|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	375	Extracellular (Potential).|FG-GAP 3.				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				AGACAACTTTCAGATGGAAAT	0.313													21	69					0	0	1	0	0
ITGA2	3673	broad.mit.edu	37	5	52361784	52361784	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52361784C>T	uc003joy.2	+	15	2063	c.1920C>T	c.(1918-1920)GCC>GCT	p.A640A	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Silent_p.A564A|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	640	FG-GAP 7.|Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				CTATTGGTGCCTTTGGACAAG	0.458													38	98					0	0	1	0	0
ITGA2	3673	broad.mit.edu	37	5	52367790	52367790	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52367790C>T	uc003joy.2	+	18	2401	c.2258C>T	c.(2257-2259)TCT>TTT	p.S753F	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.S677F|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	753	Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				GTTGTCAACTCTTTGGATTTG	0.453													19	43					0	0	1	0	0
ITGA2	3673	broad.mit.edu	37	5	52371064	52371064	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52371064G>A	uc003joy.2	+	23	2898	c.2755G>A	c.(2755-2757)GAA>AAA	p.E919K	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.E843K|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	919	Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				AAGCCAAGAAGAAAACAAGGC	0.348													21	39					0	0	1	0	0
ITGA2	3673	broad.mit.edu	37	5	52374652	52374652	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52374652C>T	uc003joy.2	+	24	3019	c.2876C>T	c.(2875-2877)TCA>TTA	p.S959L	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.S883L|ITGA2_uc011cqd.1_Intron|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	959	Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				AATGTTCCTTCAATCGTGCAC	0.373													17	42					0	0	1	0	0
NDUFS4	4724	broad.mit.edu	37	5	52978999	52978999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:52978999C>T	uc003jpe.2	+	5	504	c.476C>T	c.(475-477)TCT>TTT	p.S159F		NM_002495	NP_002486	O43181	NDUS4_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 4	159					brain development|cAMP-mediated signaling|mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|positive regulation of fibroblast proliferation|reactive oxygen species metabolic process|regulation of protein phosphorylation|response to cAMP|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			central_nervous_system(1)	1		Lung NSC(810;8.27e-05)|Breast(144;0.0848)			NADH(DB00157)	AAGTCCAAGTCTTATGGTGCA	0.393													30	133					0	0	1	0	0
ESM1	11082	broad.mit.edu	37	5	54277897	54277898	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54277897_54277898CC>TT	uc003jpk.2	-	2	447_448	c.378_379GG>AA	c.(376-381)ACGGGA>ACAAGA	p.G127R	ESM1_uc010ivt.2_Intron	NM_007036	NP_008967	Q9NQ30	ESM1_HUMAN	endothelial cell-specific molecule 1 isoform a	127					angiogenesis|regulation of cell growth	extracellular region	growth factor activity|insulin-like growth factor binding				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.116)	Lung(15;0.23)			AGGCATTTTCCCGTCCCCCTGT	0.495													49	109					0	0	1	0	0
ESM1	11082	broad.mit.edu	37	5	54281334	54281334	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54281334G>A	uc003jpk.2	-	1	81	c.12C>T	c.(10-12)GTC>GTT	p.V4V	ESM1_uc010ivt.2_Silent_p.V4V	NM_007036	NP_008967	Q9NQ30	ESM1_HUMAN	endothelial cell-specific molecule 1 isoform a	4					angiogenesis|regulation of cell growth	extracellular region	growth factor activity|insulin-like growth factor binding				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.116)	Lung(15;0.23)			TCAGCAGCAAGACGCTCTTCA	0.597													10	59					0	0	1	0	0
GZMK	3003	broad.mit.edu	37	5	54326282	54326282	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54326282C>T	uc003jpl.1	+	3	277	c.233C>T	c.(232-234)CCC>CTC	p.P78L		NM_002104	NP_002095	P49863	GRAK_HUMAN	granzyme K precursor	78	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				GGCCAGTCTCCCACTGTGGTT	0.438													36	110					0	0	1	0	0
GZMA	3001	broad.mit.edu	37	5	54403622	54403622	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54403622G>A	uc003jpm.2	+	3	253	c.216G>A	c.(214-216)TTG>TTA	p.L72L		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	72	Peptidase S1.			NL -> IP (in Ref. 5; no nucleotide entry).	cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				CTGTTCTCAGGAACAAAAGGT	0.388													21	69					0	0	1	0	0
GZMA	3001	broad.mit.edu	37	5	54403991	54403991	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54403991C>T	uc003jpm.2	+	4	433	c.396C>T	c.(394-396)ATC>ATT	p.I132I		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	132	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				ATGTGACTATCCTTCATCTAC	0.373													9	43					0	0	1	0	0
GZMA	3001	broad.mit.edu	37	5	54405889	54405889	+	Missense_Mutation	SNP	G	A	A	rs147876051	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54405889G>A	uc003jpm.2	+	5	705	c.668G>A	c.(667-669)CGA>CAA	p.R223Q		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	223	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				GGTGTTTTCCGAGGGGTCACT	0.483													34	75					0	0	1	0	0
CDC20B	166979	broad.mit.edu	37	5	54416286	54416286	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54416286C>T	uc003jpo.1	-	10	1483	c.1308G>A	c.(1306-1308)GGG>GGA	p.G436G	CDC20B_uc003jpn.1_Silent_p.G436G|CDC20B_uc010ivu.1_Intron	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	436	WD 5.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			GGATGCTCTTCCCAGCATTTA	0.453													49	109					0	0	1	0	0
CDC20B	166979	broad.mit.edu	37	5	54420804	54420804	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54420804G>A	uc003jpo.1	-	9	1217	c.1042C>T	c.(1042-1044)CAT>TAT	p.H348Y	CDC20B_uc003jpn.1_Missense_Mutation_p.H348Y|CDC20B_uc010ivu.1_Missense_Mutation_p.H348Y|CDC20B_uc010ivv.1_3'UTR	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	348											0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			GTTCCAACATGATGCTGGGCT	0.498													35	75					0	0	1	0	0
CDC20B	166979	broad.mit.edu	37	5	54429267	54429267	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54429267G>A	uc003jpo.1	-	6	845	c.670C>T	c.(670-672)CAT>TAT	p.H224Y	CDC20B_uc003jpn.1_Missense_Mutation_p.H224Y|CDC20B_uc010ivu.1_Missense_Mutation_p.H224Y|CDC20B_uc010ivv.1_Missense_Mutation_p.H224Y	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	224											0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			CCAGTAATATGAATCTTCACC	0.363													31	109					0	0	1	0	0
DHX29	54505	broad.mit.edu	37	5	54570741	54570741	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54570741G>A	uc003jpx.2	-	15	2645	c.2525C>T	c.(2524-2526)CCT>CTT	p.P842L	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	842							ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				GATTTTATGAGGATTCATGTA	0.358													54	154					0	0	1	0	0
DHX29	54505	broad.mit.edu	37	5	54577320	54577320	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54577320G>A	uc003jpx.2	-	12	2109	c.1989C>T	c.(1987-1989)ATC>ATT	p.I663I	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	663	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				ATTCCATCCGGATCTGATATC	0.393													23	98					0	0	1	0	0
SKIV2L2	23517	broad.mit.edu	37	5	54639208	54639208	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54639208C>T	uc003jpy.3	+	8	1097	c.831C>T	c.(829-831)GTC>GTT	p.V277V	SKIV2L2_uc011cqi.1_Silent_p.V176V	NM_015360	NP_056175	P42285	SK2L2_HUMAN	superkiller viralicidic activity 2-like 2	277	Helicase ATP-binding.				maturation of 5.8S rRNA	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(1)|skin(1)	2		Lung NSC(810;0.000744)|Breast(144;0.181)|Prostate(74;0.194)				CTGATAACGTCCACTATGTCT	0.353													29	93					0	0	1	0	0
SLC38A9	153129	broad.mit.edu	37	5	54922345	54922345	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54922345G>A	uc003jqf.2	-	16	1864	c.1663C>T	c.(1663-1665)CTG>TTG	p.L555L	SLC38A9_uc003jqd.2_Silent_p.L492L|SLC38A9_uc010ivx.2_Silent_p.L492L|SLC38A9_uc003jqe.2_RNA|SLC38A9_uc010ivy.2_Silent_p.L426L	NM_173514	NP_775785	Q8NBW4	S38A9_HUMAN	solute carrier family 38, member 9	555	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0		Lung NSC(810;0.00122)|Prostate(74;0.0376)|Breast(144;0.181)				TGAACAATCAGGTTAGCCACG	0.368													42	110					0	0	1	0	0
SLC38A9	153129	broad.mit.edu	37	5	54929585	54929585	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:54929585G>A	uc003jqf.2	-	14	1628	c.1427C>T	c.(1426-1428)CCT>CTT	p.P476L	SLC38A9_uc003jqd.2_Missense_Mutation_p.P413L|SLC38A9_uc010ivx.2_Missense_Mutation_p.P413L|SLC38A9_uc003jqe.2_RNA|SLC38A9_uc010ivy.2_Missense_Mutation_p.P347L	NM_173514	NP_775785	Q8NBW4	S38A9_HUMAN	solute carrier family 38, member 9	476					amino acid transport|sodium ion transport	integral to membrane					0		Lung NSC(810;0.00122)|Prostate(74;0.0376)|Breast(144;0.181)				CCCTTACCTAGGATAAATGTC	0.458													15	33					0	0	1	0	0
DDX4	54514	broad.mit.edu	37	5	55056065	55056065	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:55056065G>A	uc003jqg.3	+	4	239	c.165G>A	c.(163-165)ATG>ATA	p.M55I	DDX4_uc010ivz.2_Missense_Mutation_p.M55I|DDX4_uc003jqh.3_Missense_Mutation_p.M55I	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	55					multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				ATCATTTCATGAAAAGTGGAT	0.358													41	95					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55195914	55195914	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:55195914G>A	uc003jql.2	+	8	1088	c.1023G>A	c.(1021-1023)GGG>GGA	p.G341G	IL31RA_uc003jqk.2_Silent_p.G341G|IL31RA_uc011cqj.1_Silent_p.G199G|IL31RA_uc003jqm.2_Silent_p.G309G|IL31RA_uc003jqn.2_Silent_p.G341G|IL31RA_uc010iwa.1_Silent_p.G309G|IL31RA_uc003jqo.2_Silent_p.G199G	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	309	Extracellular (Potential).|Fibronectin type-III 3.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				ATTCTCTTGGGAAGTCTCCAG	0.453													20	194					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55202068	55202068	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:55202068C>A	uc003jql.2	+	9	1269	c.1204C>A	c.(1204-1206)CTT>ATT	p.L402I	IL31RA_uc003jqk.2_Missense_Mutation_p.L402I|IL31RA_uc011cqj.1_Missense_Mutation_p.L260I|IL31RA_uc003jqm.2_Missense_Mutation_p.L370I|IL31RA_uc003jqn.2_Missense_Mutation_p.L402I|IL31RA_uc010iwa.1_Missense_Mutation_p.L370I|IL31RA_uc003jqo.2_Missense_Mutation_p.L260I	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	370	Extracellular (Potential).|Fibronectin type-III 4.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				GCCCACCACCCTTTCCTGGGA	0.537													19	46					2.70639e-06	2.71095e-06	1	1	0
IL31RA	133396	broad.mit.edu	37	5	55202097	55202097	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:55202097G>A	uc003jql.2	+	9	1298	c.1233G>A	c.(1231-1233)ACG>ACA	p.T411T	IL31RA_uc003jqk.2_Silent_p.T411T|IL31RA_uc011cqj.1_Silent_p.T269T|IL31RA_uc003jqm.2_Silent_p.T379T|IL31RA_uc003jqn.2_Silent_p.T411T|IL31RA_uc010iwa.1_Silent_p.T379T|IL31RA_uc003jqo.2_Silent_p.T269T	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	379	Extracellular (Potential).|Fibronectin type-III 4.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				CTCAGGCCACGAACTGGACGA	0.498													19	38					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55210706	55210706	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:55210706C>T	uc003jql.2	+	14	1833	c.1768C>T	c.(1768-1770)CCC>TCC	p.P590S	IL31RA_uc003jqm.2_Missense_Mutation_p.P558S|IL31RA_uc003jqn.2_Missense_Mutation_p.P590S|IL31RA_uc003jqo.2_Missense_Mutation_p.P448S	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	558	Cytoplasmic (Potential).				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				GCCCACCGTTCCCAACCCTGC	0.428													22	98					0	0	1	0	0
GPBP1	65056	broad.mit.edu	37	5	56527007	56527007	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:56527007C>T	uc003jrh.3	+	5	1544	c.270C>T	c.(268-270)TAC>TAT	p.Y90Y	GPBP1_uc010iwg.2_Silent_p.Y90Y|GPBP1_uc003jri.3_5'UTR|GPBP1_uc003jrj.3_Silent_p.Y97Y|GPBP1_uc003jrk.3_Silent_p.Y97Y|GPBP1_uc003jrl.3_RNA	NM_022913	NP_075064	Q86WP2	GPBP1_HUMAN	GC-rich promoter binding protein 1 isoform 1	90					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			large_intestine(1)|central_nervous_system(1)	2		Lung NSC(810;0.000861)|Prostate(74;0.0305)|Breast(144;0.222)		OV - Ovarian serous cystadenocarcinoma(10;7.64e-39)		GAGGTGGATACCATGGTGGAA	0.398													6	86					0	0	1	0	0
DEPDC1B	55789	broad.mit.edu	37	5	59899274	59899274	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:59899274G>A	uc003jsh.2	-	9	1259	c.1186C>T	c.(1186-1188)CCT>TCT	p.P396S	DEPDC1B_uc011cqm.1_Missense_Mutation_p.P396S|DEPDC1B_uc011cqn.1_Missense_Mutation_p.P369S	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	396					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				AAGGCCAAAGGGACTTTCAGA	0.418													26	67					0	0	1	0	0
ELOVL7	79993	broad.mit.edu	37	5	60067763	60067763	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:60067763G>A	uc003jsi.3	-	4	422	c.222C>T	c.(220-222)TTC>TTT	p.F74F	ELOVL7_uc011cqo.1_Intron|ELOVL7_uc010iwk.2_Silent_p.F74F|ELOVL7_uc003jsj.3_Silent_p.F61F	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	74	Helical; (Potential).				fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				AGAGTACTATGAAAAAATTGT	0.358													14	30					0	0	1	0	0
ELOVL7	79993	broad.mit.edu	37	5	60067864	60067864	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:60067864G>A	uc003jsi.3	-	4	321	c.121C>T	c.(121-123)CTA>TTA	p.L41L	ELOVL7_uc011cqo.1_5'UTR|ELOVL7_uc010iwk.2_Silent_p.L41L|ELOVL7_uc003jsj.3_Silent_p.L28L	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	41	Helical; (Potential).				fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				TAGAATCCTAGGAGGATGGTT	0.423													13	17					0	0	1	0	0
KIF2A	3796	broad.mit.edu	37	5	61654077	61654077	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:61654077C>T	uc003jsy.3	+	9	1134	c.823C>T	c.(823-825)CGT>TGT	p.R275C	KIF2A_uc003jsz.3_Missense_Mutation_p.R275C|KIF2A_uc010iwp.2_Missense_Mutation_p.R256C|KIF2A_uc003jsx.3_Missense_Mutation_p.R255C|KIF2A_uc010iwq.2_Missense_Mutation_p.R78C	NM_004520	NP_004511	O00139	KIF2A_HUMAN	kinesin heavy chain member 2 isoform 1	275	Kinesin-motor.				blood coagulation|cell differentiation|cell division|microtubule-based movement|mitotic prometaphase|mitotic spindle organization|nervous system development	centrosome|cytosol|microtubule|spindle pole	ATP binding|microtubule motor activity|protein binding				0		Lung NSC(810;8.94e-06)|Prostate(74;0.0132)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.14)		CCAAACATTTCGTTTTGATTA	0.323													8	42					0	0	1	0	0
KIF2A	3796	broad.mit.edu	37	5	61659025	61659025	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:61659025G>A	uc003jsy.3	+	13	1451	c.1140G>A	c.(1138-1140)AGG>AGA	p.R380R	KIF2A_uc003jsz.3_Silent_p.R380R|KIF2A_uc010iwp.2_Silent_p.R361R|KIF2A_uc003jsx.3_Silent_p.R360R|KIF2A_uc010iwq.2_Silent_p.R183R	NM_004520	NP_004511	O00139	KIF2A_HUMAN	kinesin heavy chain member 2 isoform 1	380	Kinesin-motor.				blood coagulation|cell differentiation|cell division|microtubule-based movement|mitotic prometaphase|mitotic spindle organization|nervous system development	centrosome|cytosol|microtubule|spindle pole	ATP binding|microtubule motor activity|protein binding				0		Lung NSC(810;8.94e-06)|Prostate(74;0.0132)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.14)		TGCTAAACAGGAAAACAAAAT	0.294													4	13					0	0	1	0	0
KIF2A	3796	broad.mit.edu	37	5	61669557	61669557	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:61669557C>T	uc003jsy.3	+	17	2001	c.1690C>T	c.(1690-1692)CGT>TGT	p.R564C	KIF2A_uc003jsz.3_Missense_Mutation_p.R602C|KIF2A_uc010iwp.2_Missense_Mutation_p.R545C|KIF2A_uc003jsx.3_Missense_Mutation_p.R544C|KIF2A_uc010iwq.2_Missense_Mutation_p.R367C	NM_004520	NP_004511	O00139	KIF2A_HUMAN	kinesin heavy chain member 2 isoform 1	564					blood coagulation|cell differentiation|cell division|microtubule-based movement|mitotic prometaphase|mitotic spindle organization|nervous system development	centrosome|cytosol|microtubule|spindle pole	ATP binding|microtubule motor activity|protein binding				0		Lung NSC(810;8.94e-06)|Prostate(74;0.0132)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.14)		TGGTGATGTTCGTCCAATAAT	0.418													9	41					0	0	1	0	0
IPO11	51194	broad.mit.edu	37	5	61745770	61745770	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:61745770G>A	uc003jtc.2	+	4	446	c.256G>A	c.(256-258)GAG>AAG	p.E86K	IPO11_uc011cqr.1_Missense_Mutation_p.E126K|IPO11_uc003jtb.1_Missense_Mutation_p.E86K	NM_016338	NP_057422	Q9UI26	IPO11_HUMAN	Ran binding protein 11 isoform 2	86	Importin N-terminal.					cytoplasm|nucleus	protein binding			lung(2)|skin(2)	4		Lung NSC(810;8.99e-06)|Prostate(74;0.0235)|Ovarian(174;0.0511)|Breast(144;0.077)		Lung(70;0.0613)		CTCAGAGGAGGAGAAAACTAC	0.328													25	78					0	0	1	0	0
IPO11	51194	broad.mit.edu	37	5	61778959	61778959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:61778959C>T	uc003jtc.2	+	10	1050	c.860C>T	c.(859-861)TCA>TTA	p.S287L	IPO11_uc011cqr.1_Missense_Mutation_p.S327L|IPO11_uc003jtb.1_Missense_Mutation_p.S287L	NM_016338	NP_057422	Q9UI26	IPO11_HUMAN	Ran binding protein 11 isoform 2	287						cytoplasm|nucleus	protein binding			lung(2)|skin(2)	4		Lung NSC(810;8.99e-06)|Prostate(74;0.0235)|Ovarian(174;0.0511)|Breast(144;0.077)		Lung(70;0.0613)		CATCCTTTTTCATTTACTCCT	0.308													33	48					0	0	1	0	0
ISCA1P1	389293	broad.mit.edu	37	5	62072661	62072661	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:62072661G>A	uc003jtf.2	-	2	417	c.337C>T	c.(337-339)CGT>TGT	p.R113C		NM_001080540	NP_001074009			iron-sulfur cluster assembly 1 homolog (S.												0						AAGCTTCCACGAGCTTTCCTG	0.448													16	179					0	0	1	0	0
ISCA1P1	389293	broad.mit.edu	37	5	62072804	62072804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:62072804C>T	uc003jtf.2	-	1	367	c.287G>A	c.(286-288)GGA>GAA	p.G96E		NM_001080540	NP_001074009			iron-sulfur cluster assembly 1 homolog (S.												0						CATTTCTGTTCCTAAAAGTGT	0.353													46	204					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63256380	63256380	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:63256380G>A	uc011cqt.1	-	1	1167	c.1167C>T	c.(1165-1167)GGC>GGT	p.G389G		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	389	Helical; Name=7; (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	AGTTGGAGTAGCCCAGCCAAT	0.507													60	234					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63256409	63256409	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:63256409G>A	uc011cqt.1	-	1	1138	c.1138C>T	c.(1138-1140)CTG>TTG	p.L380L		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	380	Helical; Name=7; (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GCGCCCAACAGGGTGGGCATG	0.527													69	206					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63256493	63256494	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:63256493_63256494CC>TT	uc011cqt.1	-	1	1053_1054	c.1053_1054GG>AA	c.(1051-1056)ATGGGC>ATAAGC	p.351_352MG>IS		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	351_352	Helical; Name=6; (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	ATGAAGGTGCCCATGATGATGC	0.594													21	156					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63257495	63257495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:63257495G>A	uc011cqt.1	-	1	52	c.52C>T	c.(52-54)CCC>TCC	p.P18S		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	18	Extracellular (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GTCTCAAAGGGAGCCGGTGGT	0.622													21	67					0	0	1	0	0
RNF180	285671	broad.mit.edu	37	5	63509401	63509401	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:63509401G>A	uc003jti.2	+	4	358	c.248G>A	c.(247-249)GGA>GAA	p.G83E	RNF180_uc003jth.3_Missense_Mutation_p.G83E|RNF180_uc010iws.2_Intron	NM_001113561	NP_001107033	Q86T96	RN180_HUMAN	ring finger protein 180 isoform 1	83	Cytoplasmic (Potential).					integral to membrane|nuclear envelope	zinc ion binding				0		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0848)|Colorectal(97;0.234)		Lung(70;0.114)		TGGACAGTTGGAAAACTGAAT	0.418													80	183					0	0	1	0	0
CWC27	10283	broad.mit.edu	37	5	64273001	64273001	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:64273001C>T	uc003jtn.1	+	13	1411	c.1192C>T	c.(1192-1194)CAA>TAA	p.Q398*	CWC27_uc010iwt.1_Intron	NM_005869	NP_005860	Q6UX04	CWC27_HUMAN	serologically defined colon cancer antigen 10	398					protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity				0						TAAACTCACTCAAGCAATTGC	0.333													15	50					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64447723	64447723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:64447723G>A	uc003jtp.2	-	25	4108	c.3294C>T	c.(3292-3294)TTC>TTT	p.F1098F	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1098	PLAC.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TGCAGAACTTGAACTTCAGCA	0.443													19	114					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64466530	64466530	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:64466530G>A	uc003jtp.2	-	24	3972	c.3158C>T	c.(3157-3159)TCT>TTT	p.S1053F	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1053	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		ACAGTCACTAGATGCCTGTCC	0.453													25	53					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64483905	64483905	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:64483905C>T	uc003jtp.2	-	22	3662	c.2848G>A	c.(2848-2850)GAA>AAA	p.E950K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	950	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GGCTCTTTTTCGACAGGCCGG	0.507													52	135					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64484025	64484025	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:64484025C>T	uc003jtp.2	-	22	3542	c.2728G>A	c.(2728-2730)GAA>AAA	p.E910K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	910	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TTGCTGCATTCCAACCAATCC	0.498													37	135					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64595811	64595811	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:64595811C>T	uc003jtp.2	-	10	2184	c.1370_splice	c.e10+1	p.D457_splice	ADAMTS6_uc003jto.2_Splice_Site|ADAMTS6_uc003jtq.2_Splice_Site|ADAMTS6_uc003jtr.1_Splice_Site_p.D78_splice	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1						proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		AGATTACTTACTCTAGAAAGC	0.413													23	57					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64748576	64748576	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:64748576G>A	uc003jtp.2	-	5	1615	c.801C>T	c.(799-801)GGC>GGT	p.G267G	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	267	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TGTCTTTGCGGCCATGGTAGC	0.378													39	111					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64756126	64756126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:64756126C>T	uc003jtp.2	-	4	1316	c.502G>A	c.(502-504)GAA>AAA	p.E168K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	168					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TTTAAAGGTTCGATAAAATAC	0.313													22	128					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64769444	64769444	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:64769444C>T	uc003jtp.2	-	2	871	c.57G>A	c.(55-57)TCG>TCA	p.S19S	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	19					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TATGAAATTCCGATGAAGCCA	0.363													45	128					0	0	1	0	0
MAST4	375449	broad.mit.edu	37	5	66460536	66460536	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:66460536C>T	uc003jut.1	+	28	5030	c.4962C>T	c.(4960-4962)CTC>CTT	p.L1654L	MAST4_uc003juw.2_Silent_p.L1582L|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1846						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CACCAGTTCTCCCCAGCAGCA	0.557													21	53					0	0	1	0	0
MAST4	375449	broad.mit.edu	37	5	66462294	66462294	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:66462294G>A	uc003jut.1	+	28	6788	c.6720G>A	c.(6718-6720)ACG>ACA	p.T2240T	MAST4_uc003juw.2_Silent_p.T2168T|MAST4_uc003jux.2_5'UTR	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	2432						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		AGCCACCGACGGAGGCAGACA	0.662											OREG0016638	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	8					0	0	1	0	0
CD180	4064	broad.mit.edu	37	5	66478830	66478830	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:66478830C>T	uc003juy.2	-	3	1989	c.1841G>A	c.(1840-1842)AGG>AAG	p.R614K		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	614	Extracellular (Potential).|LRRCT.				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		CTTAACTCCCCTTAGAGATGG	0.413													37	79					0	0	1	0	0
CD180	4064	broad.mit.edu	37	5	66479210	66479210	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:66479210C>T	uc003juy.2	-	3	1609	c.1461G>A	c.(1459-1461)ACG>ACA	p.T487T		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	487	Extracellular (Potential).|LRR 16.				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		GGTTGGTCTTCGTGATAGTCC	0.483													22	53					0	0	1	0	0
CD180	4064	broad.mit.edu	37	5	66479639	66479639	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:66479639G>A	uc003juy.2	-	3	1180	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	344	Extracellular (Potential).				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		TAAGGGAGGGGAAATTGGCAG	0.433													56	142					0	0	1	0	0
CD180	4064	broad.mit.edu	37	5	66479913	66479913	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:66479913C>T	uc003juy.2	-	3	906	c.758G>A	c.(757-759)GGA>GAA	p.G253E		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	253	Extracellular (Potential).				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		CTCAAATGTTCCCAGCCAGAG	0.438													26	60					0	0	1	0	0
PIK3R1	5295	broad.mit.edu	37	5	67576471	67576471	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:67576471C>T	uc003jva.2	+	6	1310	c.750C>T	c.(748-750)CTC>CTT	p.L250L	PIK3R1_uc003jvb.2_Silent_p.L250L	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	250	Rho-GAP.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	TCTTCAAGCTCTCTCAAACCT	0.388			Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			55	151					0	0	1	0	0
CENPH	64946	broad.mit.edu	37	5	68492933	68492933	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:68492933C>T	uc003jvp.2	+	5	455	c.368C>T	c.(367-369)TCT>TTT	p.S123F	CENPH_uc010ixc.2_Intron	NM_022909	NP_075060	Q9H3R5	CENPH_HUMAN	centromere protein H	123	Potential.				cell division|CenH3-containing nucleosome assembly at centromere|chromosome segregation|kinetochore organization|mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleoplasm	kinetochore binding|protein binding			large_intestine(1)	1		Lung NSC(167;5.51e-05)|Prostate(74;0.00634)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.41e-56)|Epithelial(20;1.29e-52)|all cancers(19;3.15e-48)|Lung(70;0.0178)		AGCAGACAGTCTAGGTATGAT	0.328													14	55					0	0	1	0	0
RAD17	5884	broad.mit.edu	37	5	68677778	68677778	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:68677778G>A	uc003jwo.2	+	4	497	c.435G>A	c.(433-435)ACG>ACA	p.T145T	RAD17_uc003jwg.2_Silent_p.T134T|RAD17_uc003jwh.2_Silent_p.T134T|RAD17_uc003jwi.2_Silent_p.T134T|RAD17_uc003jwj.2_Silent_p.T134T|RAD17_uc003jwk.2_Silent_p.T134T|RAD17_uc003jwl.2_Silent_p.T134T|RAD17_uc003jwm.2_5'UTR|RAD17_uc003jwn.2_Silent_p.T48T	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2	145					cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		GAAAGACAACGACCTTAAAAA	0.333								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					23	69					0	0	1	0	0
MARVELD2	153562	broad.mit.edu	37	5	68737434	68737434	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:68737434C>T	uc003jwq.2	+	7	1689	c.1630C>T	c.(1630-1632)CAA>TAA	p.Q544*	MARVELD2_uc010ixf.2_Nonsense_Mutation_p.Q532*|MARVELD2_uc003jwr.1_Intron|MARVELD2_uc003jws.1_RNA	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	MARVEL domain containing 2 isoform 1	544	Potential.|Cytoplasmic (Potential).				sensory perception of sound	integral to membrane|tight junction					0		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		GCAAAGAATTCAAGAATATGA	0.234													16	50					0	0	1	0	0
OCLN	4950	broad.mit.edu	37	5	68800117	68800117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:68800117G>A	uc003jwu.2	+	2	482	c.46G>A	c.(46-48)GAA>AAA	p.E16K	OCLN_uc003jwv.3_Missense_Mutation_p.E16K	NM_002538	NP_002529			occludin												0		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		CAGGCCTGATGAATTGTAAGT	0.358													12	24					0	0	1	0	0
NAIP	4671	broad.mit.edu	37	5	70308413	70308413	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:70308413C>T	uc003kar.1	-	4	1048	c.330G>A	c.(328-330)ACG>ACA	p.T110T	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Silent_p.T110T|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	110	BIR 1.				anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		TGGGGAGTCTCGTGAGGCCGG	0.493													26	113					0	0	1	0	0
BDP1	55814	broad.mit.edu	37	5	70818641	70818641	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:70818641C>T	uc003kbp.1	+	24	5515	c.5252C>T	c.(5251-5253)TCC>TTC	p.S1751F	BDP1_uc003kbo.2_Missense_Mutation_p.S1751F|BDP1_uc003kbq.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1751					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TGTGTAGGTTCCAAAGAGTCT	0.378													26	74					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71479591	71479591	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71479591G>A	uc003kbw.3	+	3	549	c.308G>A	c.(307-309)CGA>CAA	p.R103Q	MAP1B_uc010iyw.1_Missense_Mutation_p.R103Q|MAP1B_uc010iyx.1_5'UTR|MAP1B_uc010iyy.1_5'UTR	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	103						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		CTTCATCACCGAAGTGACGTT	0.493													31	92					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71482455	71482455	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71482455C>T	uc003kbw.3	+	4	625	c.384C>T	c.(382-384)ATC>ATT	p.I128I	MAP1B_uc010iyw.1_Silent_p.I128I|MAP1B_uc010iyx.1_Silent_p.I2I|MAP1B_uc010iyy.1_Silent_p.I2I	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	128						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GCTTAATGATCACTGATGCTG	0.557													37	116					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71490409	71490409	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71490409C>T	uc003kbw.3	+	5	1468	c.1227C>T	c.(1225-1227)GTC>GTT	p.V409V	MAP1B_uc010iyw.1_Silent_p.V426V|MAP1B_uc010iyx.1_Silent_p.V283V|MAP1B_uc010iyy.1_Silent_p.V283V	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	409						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		TTGATCCTGTCATTCTTTTCC	0.403													26	104					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71491387	71491387	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71491387C>T	uc003kbw.3	+	5	2446	c.2205C>T	c.(2203-2205)CTC>CTT	p.L735L	MAP1B_uc010iyw.1_Silent_p.L752L|MAP1B_uc010iyx.1_Silent_p.L609L|MAP1B_uc010iyy.1_Silent_p.L609L	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	735	Lys-rich (highly basic, contains many KKEE and KKEI/V repeats).					microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		TTAAGAAGCTCCCTAAAGACG	0.219													37	65					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71495309	71495309	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71495309G>A	uc003kbw.3	+	5	6368	c.6127G>A	c.(6127-6129)GAG>AAG	p.E2043K	MAP1B_uc010iyw.1_Missense_Mutation_p.E2060K|MAP1B_uc010iyx.1_Missense_Mutation_p.E1917K|MAP1B_uc010iyy.1_Missense_Mutation_p.E1917K	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2043	MAP1B 9.					microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		ATACTGTTACGAGACTGCAGA	0.448													37	131					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71495547	71495547	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71495547C>T	uc003kbw.3	+	5	6606	c.6365C>T	c.(6364-6366)CCC>CTC	p.P2122L	MAP1B_uc010iyw.1_Missense_Mutation_p.P2139L|MAP1B_uc010iyx.1_Missense_Mutation_p.P1996L|MAP1B_uc010iyy.1_Missense_Mutation_p.P1996L	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2122						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		TCTGAAAAGCCCCTCACTCAA	0.542													58	129					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71496142	71496142	+	Silent	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71496142C>G	uc003kbw.3	+	5	7201	c.6960C>G	c.(6958-6960)ACC>ACG	p.T2320T	MAP1B_uc010iyw.1_Silent_p.T2337T|MAP1B_uc010iyx.1_Silent_p.T2194T|MAP1B_uc010iyy.1_Silent_p.T2194T	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2320						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		ACAAGGAGACCAAGAATGCTG	0.507													43	99					0	0	1	0	0
PTCD2	79810	broad.mit.edu	37	5	71616244	71616244	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71616244C>T	uc003kcb.2	+	1	45	c.35C>T	c.(34-36)CCC>CTC	p.P12L	MRPS27_uc003kca.3_5'Flank|MRPS27_uc003kbz.3_5'Flank|MRPS27_uc011cse.1_5'Flank|MRPS27_uc010iza.2_5'Flank|PTCD2_uc011csf.1_5'UTR|PTCD2_uc003kcc.2_5'UTR|PTCD2_uc011csg.1_5'UTR|PTCD2_uc011csh.1_Missense_Mutation_p.P12L|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	12											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		GCATTTCGGCCCTCGAATCGA	0.622													12	51					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71740108	71740108	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71740108C>T	uc003kce.1	-	5	1896	c.1710G>A	c.(1708-1710)AGG>AGA	p.R570R		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	570					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		CGATTCTCCCCCTTCCCAGAC	0.597													30	49					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71756137	71756137	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71756137G>A	uc003kce.1	-	2	1373	c.1187C>T	c.(1186-1188)TCC>TTC	p.S396F		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	396	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GTCGCACTCGGAGCAGTTGTA	0.602													13	47					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71756783	71756783	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71756783G>A	uc003kce.1	-	2	727	c.541C>T	c.(541-543)CAC>TAC	p.H181Y		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	181					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		AGGCCCGGGTGGACTTTGGGG	0.662													46	118					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71756965	71756965	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:71756965G>A	uc003kce.1	-	2	545	c.359C>T	c.(358-360)CCG>CTG	p.P120L		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	120					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		CTTGGGGCGCGGGGGCTGCGG	0.582													74	188					0	0	1	0	0
TMEM174	134288	broad.mit.edu	37	5	72469120	72469120	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:72469120C>T	uc010izc.2	+	1	98	c.50C>T	c.(49-51)TCC>TTC	p.S17F		NM_153217	NP_694949	Q8WUU8	TM174_HUMAN	transmembrane protein 174	17						integral to membrane				ovary(1)	1		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-54)		AATGTGTTCTCCGTCACTCCT	0.577													33	264					0	0	1	0	0
TMEM174	134288	broad.mit.edu	37	5	72469290	72469290	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:72469290C>T	uc010izc.2	+	1	268	c.220C>T	c.(220-222)CTT>TTT	p.L74F		NM_153217	NP_694949	Q8WUU8	TM174_HUMAN	transmembrane protein 174	74	Helical; (Potential).					integral to membrane				ovary(1)	1		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-54)		GACCCAGCTCCTTGGGCCCGT	0.512													11	105					0	0	1	0	0
TMEM174	134288	broad.mit.edu	37	5	72469386	72469386	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:72469386G>A	uc010izc.2	+	1	364	c.316G>A	c.(316-318)GAA>AAA	p.E106K		NM_153217	NP_694949	Q8WUU8	TM174_HUMAN	transmembrane protein 174	106						integral to membrane				ovary(1)	1		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-54)		AGAAAGTGAGGAAAGGGTCCC	0.532													29	84					0	0	1	0	0
TMEM174	134288	broad.mit.edu	37	5	72469404	72469404	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:72469404G>A	uc010izc.2	+	1	382	c.334G>A	c.(334-336)GAA>AAA	p.E112K		NM_153217	NP_694949	Q8WUU8	TM174_HUMAN	transmembrane protein 174	112						integral to membrane				ovary(1)	1		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-54)		CCCGGACTCGGAACAGACACC	0.517													37	77					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73045661	73045661	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:73045661G>A	uc011csq.1	+	2	45	c.34_splice	c.e2-1	p.G12_splice	RGNEF_uc003kcx.2_Splice_Site_p.G12_splice|RGNEF_uc003kcy.1_Splice_Site_p.G12_splice|RGNEF_uc010izf.2_Splice_Site_p.G12_splice	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor						cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		TCCTTTTTCAGGGGCAGATGA	0.418													16	49					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73045805	73045805	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:73045805C>T	uc011csq.1	+	2	188	c.177C>T	c.(175-177)GTC>GTT	p.V59V	RGNEF_uc003kcx.2_Silent_p.V59V|RGNEF_uc003kcy.1_Silent_p.V59V|RGNEF_uc010izf.2_Silent_p.V59V	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	59					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		AGTCCAGCGTCCCAGGTGAGG	0.483													18	81					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73128174	73128174	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:73128174G>A	uc011csq.1	+	9	1047	c.1036G>A	c.(1036-1038)GAT>AAT	p.D346N	RGNEF_uc003kcx.2_Missense_Mutation_p.D346N|RGNEF_uc003kcy.1_Missense_Mutation_p.D346N|RGNEF_uc010izf.2_Missense_Mutation_p.D346N|RGNEF_uc011csr.1_Missense_Mutation_p.D33N	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	346					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		TCGCTCCTTCGATATCCTAAA	0.423													5	24					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73142151	73142151	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:73142151C>T	uc011csq.1	+	11	1497	c.1486C>T	c.(1486-1488)CAC>TAC	p.H496Y	RGNEF_uc003kcx.2_Missense_Mutation_p.H496Y|RGNEF_uc003kcy.1_Missense_Mutation_p.H496Y|RGNEF_uc010izf.2_Missense_Mutation_p.H496Y|RGNEF_uc011csr.1_Missense_Mutation_p.H183Y	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	496					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		TGAGCCATCCCACATCTGTTA	0.483													14	44					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73169046	73169046	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:73169046G>A	uc011csq.1	+	21	2800	c.2789G>A	c.(2788-2790)CGA>CAA	p.R930Q	RGNEF_uc003kcx.2_Missense_Mutation_p.R930Q|RGNEF_uc010izf.2_Missense_Mutation_p.R930Q|RGNEF_uc011csr.1_Missense_Mutation_p.R617Q	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	930	DH.				cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		GTGATCGACCGAATTGGAGAT	0.413													6	18					0	0	1	0	0
HEXB	3074	broad.mit.edu	37	5	73981299	73981299	+	Missense_Mutation	SNP	C	T	T	rs147155126	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:73981299C>T	uc003kdf.3	+	1	331	c.214C>T	c.(214-216)CTC>TTC	p.L72F	HEXB_uc003kdd.2_Intron|HEXB_uc003kde.2_Missense_Mutation_p.L72F|HEXB_uc010izh.2_RNA	NM_000521	NP_000512	P07686	HEXB_HUMAN	hexosaminidase B preproprotein	72					cell death	lysosome	cation binding|protein heterodimerization activity|protein homodimerization activity			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Breast(144;0.231)		OV - Ovarian serous cystadenocarcinoma(47;1.72e-57)		CCTGCTGCATCTCGCCCCGGA	0.706													4	37					0	0	1	0	0
FAM169A	26049	broad.mit.edu	37	5	74100324	74100324	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:74100324C>T	uc003kdm.2	-	8	949	c.906G>A	c.(904-906)CAG>CAA	p.Q302Q	FAM169A_uc010izm.2_Silent_p.Q242Q|FAM169A_uc003kdl.2_Silent_p.Q120Q	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	302											0						CTACAGTTAGCTGCATCTCAC	0.323													28	79					0	0	1	0	0
HMGCR	3156	broad.mit.edu	37	5	74643088	74643088	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:74643088C>T	uc003kdp.2	+	6	666	c.510C>T	c.(508-510)CTC>CTT	p.L170L	HMGCR_uc011cst.1_Silent_p.L190L|HMGCR_uc003kdq.2_Silent_p.L170L|HMGCR_uc010izn.1_Silent_p.L10L	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	170	Helical; (Potential).				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	CGTTTACCCTCGATGCTCTTG	0.378													92	225					0	0	1	0	0
HMGCR	3156	broad.mit.edu	37	5	74655281	74655281	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:74655281C>T	uc003kdp.2	+	18	2513	c.2357C>T	c.(2356-2358)CCC>CTC	p.P786L	HMGCR_uc011cst.1_Missense_Mutation_p.P806L|HMGCR_uc003kdq.2_Missense_Mutation_p.P733L|HMGCR_uc010izo.2_Intron|HMGCR_uc010izp.2_Intron	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	786	Catalytic.				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	GCAAGTGGTCCCACAAATGAA	0.403													11	74					0	0	1	0	0
SV2C	22987	broad.mit.edu	37	5	75581606	75581606	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75581606G>A	uc003kei.1	+	6	1182	c.1048G>A	c.(1048-1050)GTT>ATT	p.V350I		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	350	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		CATTTCTTAGGTTGGAAAACA	0.458													23	56					0	0	1	0	0
SV2C	22987	broad.mit.edu	37	5	75596679	75596679	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75596679C>T	uc003kei.1	+	11	1896	c.1762C>T	c.(1762-1764)CTG>TTG	p.L588L		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	588	Helical; (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		TGTCAACTTTCTGGGGACATT	0.413													40	184					0	0	1	0	0
SV2C	22987	broad.mit.edu	37	5	75597272	75597272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75597272C>T	uc003kei.1	+	12	2036	c.1902C>T	c.(1900-1902)TCC>TCT	p.S634S		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	634	Extracellular (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		CCAGTGAATCCATGATGATAG	0.507													40	184					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75866417	75866417	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75866417C>T	uc003kek.2	+	4	538	c.316C>T	c.(316-318)CAT>TAT	p.H106Y		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	106	CH.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		GTCTGGCCTTCATTTTCGACA	0.433													25	78					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75886311	75886311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75886311C>T	uc003kek.2	+	8	941	c.719C>T	c.(718-720)CCA>CTA	p.P240L		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	240					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		CTAAGAAACCCAAATGCGGTT	0.378													38	57					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75888726	75888726	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75888726C>T	uc003kek.2	+	9	1105	c.883C>T	c.(883-885)CAA>TAA	p.Q295*		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	295					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		AGCAGAAATCCAAGGCAATAT	0.358													56	124					0	0	1	0	0
F2RL2	2151	broad.mit.edu	37	5	75914387	75914387	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75914387C>T	uc003kem.2	-	2	330	c.145G>A	c.(145-147)GAA>AAA	p.E49K	IQGAP2_uc003kek.2_Intron|IQGAP2_uc010izv.2_Intron|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron|F2RL2_uc011csw.1_Missense_Mutation_p.E27K	NM_004101	NP_004092	O00254	PAR3_HUMAN	coagulation factor II (thrombin) receptor-like 2	49	Extracellular (Potential).				platelet activation	extracellular region|integral to plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|thrombin receptor activity			skin(2)|ovary(1)	3		all_lung(232;0.000462)|Lung NSC(167;0.00124)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)		GGGAACTCTTCAAAAGAATTT	0.418													48	121					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75927692	75927692	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75927692C>T	uc003kek.2	+	15	1843	c.1621C>T	c.(1621-1623)CTG>TTG	p.L541L	IQGAP2_uc010izv.2_Silent_p.L94L|IQGAP2_uc011csv.1_Silent_p.L94L|IQGAP2_uc003kel.2_Silent_p.L94L	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	541					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		AGGGGTTACTCTGGTGGTTGA	0.338													10	49					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75969356	75969356	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75969356C>T	uc003kek.2	+	25	3373	c.3151C>T	c.(3151-3153)CTG>TTG	p.L1051L	IQGAP2_uc011csv.1_Silent_p.L547L|IQGAP2_uc003kel.2_Silent_p.L547L|IQGAP2_uc010izw.1_5'Flank	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	1051	Ras-GAP.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		CATTGAGAACCTGAGAAGGGT	0.418													10	117					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75978949	75978949	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75978949G>A	uc003kek.2	+	29	3892	c.3670G>A	c.(3670-3672)GAA>AAA	p.E1224K	IQGAP2_uc011csv.1_Missense_Mutation_p.E720K|IQGAP2_uc003kel.2_Missense_Mutation_p.E720K|IQGAP2_uc010izw.1_5'UTR	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	1224					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		GCTCCTGTTGGAACACCAGGA	0.398													27	70					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75991451	75991451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75991451C>T	uc003kek.2	+	32	4388	c.4166C>T	c.(4165-4167)TCC>TTC	p.S1389F	IQGAP2_uc011csv.1_Missense_Mutation_p.S885F|IQGAP2_uc003kel.2_Missense_Mutation_p.S885F|IQGAP2_uc010izw.1_Missense_Mutation_p.S90F	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	1389					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		CACGTGTCATCCGAAAATAAA	0.343													32	71					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75993946	75993946	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:75993946G>A	uc003kek.2	+	33	4563	c.4341G>A	c.(4339-4341)AAG>AAA	p.K1447K	IQGAP2_uc011csv.1_Silent_p.K943K|IQGAP2_uc003kel.2_Silent_p.K943K|IQGAP2_uc010izw.1_Silent_p.K148K	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	1447					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		CCTACATAAAGACTTGTTTAG	0.328													15	37					0	0	1	0	0
F2R	2149	broad.mit.edu	37	5	76029030	76029030	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76029030G>A	uc003ken.3	+	2	1245	c.980G>A	c.(979-981)GGA>GAA	p.G327E		NM_001992	NP_001983	P25116	PAR1_HUMAN	coagulation factor II receptor precursor	327	Helical; Name=6; (Potential).				activation of caspase activity|anatomical structure morphogenesis|connective tissue replacement involved in inflammatory response wound healing|negative regulation of cell proliferation|platelet activation|positive regulation of blood coagulation|positive regulation of cell migration|positive regulation of collagen biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JAK-STAT cascade|positive regulation of MAPKKK cascade|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of transcription, DNA-dependent|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	caveola|extracellular region|Golgi apparatus|integral to plasma membrane|platelet dense tubular network	receptor binding|thrombin receptor activity			ovary(3)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)	Streptokinase(DB00086)	ATTTGCTTCGGACCCACAAAC	0.512													34	101					0	0	1	0	0
F2RL1	2150	broad.mit.edu	37	5	76128799	76128799	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76128799C>T	uc003keo.2	+	2	542	c.367C>T	c.(367-369)CTC>TTC	p.L123F		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	123	Helical; Name=2; (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		GGCTGACCTCCTCTCTGTCAT	0.463													70	290					0	0	1	0	0
S100Z	170591	broad.mit.edu	37	5	76173582	76173582	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76173582C>T	uc003kep.1	+	4	555	c.225C>T	c.(223-225)TTC>TTT	p.F75F	S100Z_uc003keq.3_Silent_p.F75F	NM_130772	NP_570128	Q8WXG8	S100Z_HUMAN	S100 calcium binding protein Z	75	EF-hand 2.						calcium ion binding			ovary(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;8.91e-51)|Epithelial(54;5.43e-45)|all cancers(79;1.82e-40)		TTAATGAATTCGTGGTCATGG	0.378													7	75					0	0	1	0	0
CRHBP	1393	broad.mit.edu	37	5	76249004	76249004	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76249004C>T	uc003ker.2	+	1	325	c.45C>T	c.(43-45)TTC>TTT	p.F15F	CRHBP_uc010izx.2_Silent_p.F15F	NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein	15					female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		TTCTCATCTTCCTGACGGCTC	0.582													16	44					0	0	1	0	0
AGGF1	55109	broad.mit.edu	37	5	76332544	76332544	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76332544C>T	uc003ket.2	+	4	1040	c.680C>T	c.(679-681)TCT>TTT	p.S227F	AGGF1_uc003keu.1_RNA	NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	227					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		TATTATGATTCTGTAAGTATC	0.239													6	79					0	0	1	0	0
AGGF1	55109	broad.mit.edu	37	5	76342274	76342274	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76342274C>T	uc003ket.2	+	6	1333	c.973C>T	c.(973-975)CAT>TAT	p.H325Y		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	325					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		AATAGGCATTCATCACAAAAA	0.358													17	215					0	0	1	0	0
AGGF1	55109	broad.mit.edu	37	5	76348532	76348532	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76348532T>A	uc003ket.2	+	9	1727	c.1367T>A	c.(1366-1368)TTT>TAT	p.F456Y		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	456	FHA.				angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		CTTTCTAAGTTTCATGCAGAA	0.299													7	49					0	0	1	0	0
PDE8B	8622	broad.mit.edu	37	5	76627229	76627229	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76627229C>T	uc003kfa.2	+	5	698	c.653C>T	c.(652-654)TCG>TTG	p.S218L	PDE8B_uc003kfb.2_Missense_Mutation_p.S198L|PDE8B_uc003kfc.2_Missense_Mutation_p.S218L|PDE8B_uc003kfd.2_Missense_Mutation_p.S218L|PDE8B_uc003kfe.2_Missense_Mutation_p.S218L	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	218					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		TGCTGCAGATCGGATGACCAT	0.502													44	166					0	0	1	0	0
PDE8B	8622	broad.mit.edu	37	5	76715603	76715603	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76715603G>A	uc003kfa.2	+	19	2186	c.2141G>A	c.(2140-2142)CGA>CAA	p.R714Q	PDE8B_uc003kfb.2_Missense_Mutation_p.R694Q|PDE8B_uc003kfc.2_Missense_Mutation_p.R659Q|PDE8B_uc003kfd.2_Missense_Mutation_p.R667Q|PDE8B_uc003kfe.2_Missense_Mutation_p.R617Q	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	714	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		AACCATTATCGAACGCTGCGC	0.413													28	66					0	0	1	0	0
TBCA	6902	broad.mit.edu	37	5	76989169	76989169	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:76989169G>A	uc003kfh.1	-	3	272	c.168C>T	c.(166-168)ATC>ATT	p.I56I	TBCA_uc003kfi.1_Silent_p.I56I	NM_004607	NP_004598	O75347	TBCA_HUMAN	tubulin-specific chaperone a	56					'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway|tubulin complex assembly	cytoplasm|microtubule	chaperone binding|unfolded protein binding			ovary(1)	1		all_lung(232;0.000511)|Lung NSC(167;0.000601)|Ovarian(174;0.0105)|Prostate(461;0.214)		OV - Ovarian serous cystadenocarcinoma(54;1.02e-49)|Epithelial(54;1.05e-44)|all cancers(79;4.08e-40)		ATTCTTGTAGGATCTCTGCCT	0.423													6	47					0	0	1	0	0
AP3B1	8546	broad.mit.edu	37	5	77316575	77316575	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:77316575G>A	uc003kfj.2	-	25	3058	c.2933C>T	c.(2932-2934)CCT>CTT	p.P978L		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	978					endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)		TTCTCCAACAGGTGGCTGAAT	0.338									Hermansky-Pudlak_syndrome				23	61					0	0	1	0	0
DMGDH	29958	broad.mit.edu	37	5	78322274	78322274	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78322274C>T	uc003kfs.2	-	13	2169	c.2163G>A	c.(2161-2163)GAG>GAA	p.E721E	DMGDH_uc011cte.1_Silent_p.E571E|DMGDH_uc011ctf.1_Silent_p.E520E|DMGDH_uc011ctg.1_Silent_p.E341E	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	721					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		TGAAGGCTTTCTCCAGGCGTA	0.423													65	142					0	0	1	0	0
DMGDH	29958	broad.mit.edu	37	5	78328593	78328593	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78328593C>T	uc003kfs.2	-	9	1440	c.1434G>A	c.(1432-1434)CTG>CTA	p.L478L	DMGDH_uc011cte.1_Silent_p.L328L|DMGDH_uc011ctf.1_Silent_p.L277L|DMGDH_uc011ctg.1_Silent_p.L98L	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	478					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		ACTTAGACTCCAGCCTTTGAT	0.493													35	191					0	0	1	0	0
DMGDH	29958	broad.mit.edu	37	5	78340139	78340139	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78340139C>T	uc003kfs.2	-	6	988	c.982G>A	c.(982-984)GGA>AGA	p.G328R	DMGDH_uc011cte.1_Missense_Mutation_p.G178R|DMGDH_uc011ctf.1_Missense_Mutation_p.G127R|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	328					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		GGAGGAACTCCATTGGTGACC	0.458													41	89					0	0	1	0	0
DMGDH	29958	broad.mit.edu	37	5	78340231	78340231	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78340231G>A	uc003kfs.2	-	6	896	c.890C>T	c.(889-891)TCA>TTA	p.S297L	DMGDH_uc011cte.1_Missense_Mutation_p.S147L|DMGDH_uc011ctf.1_Missense_Mutation_p.S96L|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	297					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		GAGATAATATGATCCTTCCAG	0.438													45	107					0	0	1	0	0
DMGDH	29958	broad.mit.edu	37	5	78347272	78347272	+	Missense_Mutation	SNP	G	A	A	rs35879437		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78347272G>A	uc003kfs.2	-	5	589	c.583C>T	c.(583-585)CCT>TCT	p.P195S	DMGDH_uc011cte.1_Missense_Mutation_p.P45S|DMGDH_uc011ctf.1_Intron|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	195					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		AGAGAATAAGGATCAATGTGA	0.388													41	98					0	0	1	0	0
BHMT2	23743	broad.mit.edu	37	5	78376586	78376586	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78376586G>A	uc003kft.2	+	4	358	c.335G>A	c.(334-336)GGG>GAG	p.G112E	BHMT2_uc011cth.1_Intron	NM_017614	NP_060084	Q9H2M3	BHMT2_HUMAN	betaine-homocysteine methyltransferase 2	112	Hcy-binding.				methionine biosynthetic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00063)|Lung NSC(167;0.00171)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;2.09e-45)|Epithelial(54;9.3e-41)|all cancers(79;4.09e-36)	L-Methionine(DB00134)	GTAGCAGGGGGGATCTGCCAG	0.453													35	97					0	0	1	0	0
BHMT2	23743	broad.mit.edu	37	5	78379475	78379475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78379475G>A	uc003kft.2	+	7	829	c.806G>A	c.(805-807)AGA>AAA	p.R269K	BHMT2_uc011cth.1_Missense_Mutation_p.R205K	NM_017614	NP_060084	Q9H2M3	BHMT2_HUMAN	betaine-homocysteine methyltransferase 2	269	Hcy-binding.				methionine biosynthetic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00063)|Lung NSC(167;0.00171)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;2.09e-45)|Epithelial(54;9.3e-41)|all cancers(79;4.09e-36)	L-Methionine(DB00134)	GTTGCCACCAGATGGGATATT	0.458													16	54					0	0	1	0	0
BHMT2	23743	broad.mit.edu	37	5	78379618	78379618	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78379618G>A	uc003kft.2	+	7	972	c.949G>A	c.(949-951)GAA>AAA	p.E317K	BHMT2_uc011cth.1_Missense_Mutation_p.E253K	NM_017614	NP_060084	Q9H2M3	BHMT2_HUMAN	betaine-homocysteine methyltransferase 2	317					methionine biosynthetic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00063)|Lung NSC(167;0.00171)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;2.09e-45)|Epithelial(54;9.3e-41)|all cancers(79;4.09e-36)	L-Methionine(DB00134)	ACCAGCTTCAGAAAAACACGG	0.478													18	29					0	0	1	0	0
BHMT	635	broad.mit.edu	37	5	78411722	78411722	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78411722G>A	uc003kfu.3	+	2	271	c.166G>A	c.(166-168)GTT>ATT	p.V56I	BHMT_uc011cti.1_Missense_Mutation_p.G56R	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	56	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	CCCAGAAGCAGGTTGGTGCAG	0.353													11	54					0	0	1	0	0
BHMT	635	broad.mit.edu	37	5	78415084	78415084	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78415084C>T	uc003kfu.3	+	3	274	c.169C>T	c.(169-171)CGC>TGC	p.R57C	BHMT_uc011cti.1_Intron	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	57	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	TCTCCCAGTTCGCCAGCTTCA	0.438													30	100					0	0	1	0	0
BHMT	635	broad.mit.edu	37	5	78421875	78421875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78421875C>T	uc003kfu.3	+	6	737	c.632C>T	c.(631-633)TCC>TTC	p.S211F	BHMT_uc011cti.1_Missense_Mutation_p.S58F	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	211	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	ACAGGAGCATCCATCATTGGT	0.488													21	80					0	0	1	0	0
JMY	133746	broad.mit.edu	37	5	78608307	78608307	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78608307C>T	uc003kfx.3	+	8	2570	c.2050C>T	c.(2050-2052)CGA>TGA	p.R684*	JMY_uc003kfw.1_Nonsense_Mutation_p.R330*	NM_152405	NP_689618	Q8N9B5	JMY_HUMAN	junction-mediating and regulatory protein	684					'de novo' actin filament nucleation|actin polymerization-dependent cell motility|Arp2/3 complex-mediated actin nucleation|cell cycle arrest|DNA repair|induction of apoptosis|positive regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter	cell leading edge|cytoplasm|cytoskeleton|nucleus	actin binding|transcription coactivator activity				0		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;4.45e-45)|Epithelial(54;5.85e-40)|all cancers(79;2.89e-35)		GGATAGACTTCGAACATTTAA	0.303													24	94					0	0	1	0	0
HOMER1	9456	broad.mit.edu	37	5	78672008	78672008	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78672008G>A	uc003kfy.2	-	9	1992	c.889C>T	c.(889-891)CGG>TGG	p.R297W	HOMER1_uc010jab.2_3'UTR|HOMER1_uc010jac.2_Missense_Mutation_p.R167W|HOMER1_uc010jad.2_Missense_Mutation_p.R123W	NM_004272	NP_004263	Q86YM7	HOME1_HUMAN	homer 1	297	Potential.				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic density|postsynaptic membrane					0		Lung NSC(167;0.00131)|all_lung(232;0.00151)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.87e-44)|Epithelial(54;7.07e-41)|all cancers(79;5.5e-36)		TCTTTGTTCCGAATTTCTACT	0.368													43	109					0	0	1	0	0
PAPD4	167153	broad.mit.edu	37	5	78915544	78915544	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:78915544C>T	uc010jae.1	+	3	491	c.73C>T	c.(73-75)CTG>TTG	p.L25L	PAPD4_uc003kgb.2_Silent_p.L25L|PAPD4_uc010jaf.1_Silent_p.L25L|PAPD4_uc003kga.2_Silent_p.L25L|PAPD4_uc003kfz.2_Silent_p.L25L	NM_001114393	NP_001107865	Q6PIY7	GLD2_HUMAN	PAP associated domain containing 4	25					histone mRNA catabolic process|mRNA processing|RNA polyadenylation	cytoplasm	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity			ovary(1)	1		Lung NSC(167;0.00293)|all_lung(232;0.00323)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;8.61e-47)|Epithelial(54;1.32e-41)|all cancers(79;2.45e-36)		CTTCTTTACCCTGTCACCTAC	0.408													27	79					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79024751	79024751	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79024751G>A	uc003kgc.2	+	2	235	c.163G>A	c.(163-165)GAT>AAT	p.D55N		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	55	Glu-rich.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ATCAGACCAGGATGAAGAGGG	0.313													17	31					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79025987	79025987	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79025987G>A	uc003kgc.2	+	2	1471	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	467						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGAAAGGGCAGAACCAGTCTC	0.512													38	116					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79026326	79026326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79026326G>A	uc003kgc.2	+	2	1810	c.1738G>A	c.(1738-1740)GAA>AAA	p.E580K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	580	Glu-rich.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TTTGTCTGAGGAAGAAAGAGA	0.423													112	310					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79026768	79026768	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79026768C>T	uc003kgc.2	+	2	2252	c.2180C>T	c.(2179-2181)TCT>TTT	p.S727F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	727						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAAGGTGTTTCTGAGTACATG	0.453													30	60					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79026783	79026783	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79026783C>T	uc003kgc.2	+	2	2267	c.2195C>T	c.(2194-2196)CCA>CTA	p.P732L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	732						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TACATGATTCCATCAGAAGAG	0.448													24	69					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79028721	79028721	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79028721C>T	uc003kgc.2	+	2	4205	c.4133C>T	c.(4132-4134)TCT>TTT	p.S1378F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1378						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ACAGATTCATCTCTTATCACT	0.393													16	30					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79028820	79028820	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79028820C>T	uc003kgc.2	+	2	4304	c.4232C>T	c.(4231-4233)TCA>TTA	p.S1411L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1411						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GATGAACATTCAGTTCTTGCA	0.408													9	27					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79029900	79029900	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79029900C>T	uc003kgc.2	+	2	5384	c.5312C>T	c.(5311-5313)CCA>CTA	p.P1771L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1771						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GAAATAGGCCCATTACCACCA	0.408													31	70					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79030039	79030039	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79030039C>T	uc003kgc.2	+	2	5523	c.5451C>T	c.(5449-5451)CTC>CTT	p.L1817L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1817						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CTTCTGACCTCCTTGTAGAAC	0.378													20	69					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79031330	79031330	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79031330G>A	uc003kgc.2	+	2	6814	c.6742G>A	c.(6742-6744)GAA>AAA	p.E2248K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2248						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AACTGCTGATGAACCCAGAGG	0.348													39	86					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79031688	79031688	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79031688G>A	uc003kgc.2	+	2	7172	c.7100G>A	c.(7099-7101)AGA>AAA	p.R2367K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2367						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GAAGAGCCAAGAAGTGATCAA	0.368													17	51					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79031795	79031795	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79031795G>A	uc003kgc.2	+	2	7279	c.7207G>A	c.(7207-7209)GAA>AAA	p.E2403K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2403						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TATCACAAAGGAATCAGAGAA	0.348													16	48					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79032165	79032165	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79032165G>A	uc003kgc.2	+	2	7649	c.7577G>A	c.(7576-7578)AGA>AAA	p.R2526K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2526						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TACAATGAAAGACCCAAAATC	0.378													15	33					0	0	1	0	0
THBS4	7060	broad.mit.edu	37	5	79351739	79351739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79351739G>A	uc003kgh.2	+	4	747	c.424G>A	c.(424-426)GAG>AAG	p.E142K		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	142	TSP N-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		CGGCTCCCTAGAGCTCTACCT	0.572													29	86					0	0	1	0	0
THBS4	7060	broad.mit.edu	37	5	79375891	79375891	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79375891G>A	uc003kgh.2	+	21	2998	c.2675G>A	c.(2674-2676)GGC>GAC	p.G892D	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	892	TSP C-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		CCCCAGGTGGGCTACATCAGG	0.557													3	18					0	0	1	0	0
SERINC5	256987	broad.mit.edu	37	5	79441966	79441966	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79441966G>A	uc003kgj.2	-	11	1314	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	SERINC5_uc003kgk.2_Silent_p.F393F|SERINC5_uc003kgl.2_RNA|SERINC5_uc003kgm.2_Silent_p.F395F|SERINC5_uc011ctj.1_Silent_p.F395F	NM_178276	NP_840060	Q86VE9	SERC5_HUMAN	developmentally regulated protein TPO1	395	Helical; (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(167;0.00328)|all_lung(232;0.00356)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.93e-46)|Epithelial(54;5.59e-40)|all cancers(79;1.89e-34)		GGAAGAACACGAAGTGGAAGT	0.488													25	173					0	0	1	0	0
SERINC5	256987	broad.mit.edu	37	5	79498730	79498730	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79498730G>A	uc003kgj.2	-	2	299	c.170C>T	c.(169-171)ACC>ATC	p.T57I	SERINC5_uc003kgk.2_Missense_Mutation_p.T57I|SERINC5_uc003kgl.2_RNA|SERINC5_uc003kgm.2_Missense_Mutation_p.T57I|SERINC5_uc011ctj.1_Missense_Mutation_p.T57I	NM_178276	NP_840060	Q86VE9	SERC5_HUMAN	developmentally regulated protein TPO1	57	Helical; (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(167;0.00328)|all_lung(232;0.00356)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.93e-46)|Epithelial(54;5.59e-40)|all cancers(79;1.89e-34)		GTGAGCCACGGTTGTTGACAT	0.502													10	24					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	79655200	79655200	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79655200C>T	uc003kgo.2	-	1	708	c.545G>A	c.(544-546)GGA>GAA	p.G182E						SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		actgaagtttcctccatgacc	0.109													14	47					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	79655587	79655587	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79655587G>A	uc003kgo.2	-	1	321	c.158C>T	c.(157-159)TCG>TTG	p.S53L						SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		ATCTTCTCTCGAGACAGCTCT	0.453													32	75					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	79655686	79655686	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79655686C>T	uc003kgo.2	-	1	222	c.59G>A	c.(58-60)GGG>GAG	p.G20E						SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		TGTGACAAACCCAAAGCCCCT	0.522													21	31					0	0	1	0	0
ZFYVE16	9765	broad.mit.edu	37	5	79733273	79733273	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79733273C>T	uc003kgr.3	+	4	1071	c.769C>T	c.(769-771)CAT>TAT	p.H257Y	ZFYVE16_uc010jak.1_Missense_Mutation_p.H257Y|ZFYVE16_uc003kgp.2_Missense_Mutation_p.H257Y|ZFYVE16_uc003kgq.3_Missense_Mutation_p.H257Y|ZFYVE16_uc003kgs.3_Missense_Mutation_p.H257Y	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	257					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		CAAAATGTTTCATGCCAAAGA	0.353													26	94					0	0	1	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79854699	79854699	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:79854699G>A	uc010jam.2	-	4	1490	c.1140C>T	c.(1138-1140)ACC>ACT	p.T380T	ANKRD34B_uc003kgw.2_Silent_p.T380T|ANKRD34B_uc010jan.2_Silent_p.T380T	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	380						cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		AAGTTGGAGGGGTAAGGCCAG	0.428													24	53					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80366371	80366371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:80366371G>A	uc003kha.1	+	4	604	c.604G>A	c.(604-606)GAA>AAA	p.E202K	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_Missense_Mutation_p.E30K	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	202					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CCAAGAAGACGAAGATCCAGA	0.428													35	80					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80419559	80419559	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:80419559C>T	uc003kha.1	+	16	2569	c.2569C>T	c.(2569-2571)CGG>TGG	p.R857W	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	857					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CTCAACTCCTCGGCACCTCCG	0.532													17	48					0	0	1	0	0
CKMT2	1160	broad.mit.edu	37	5	80550833	80550833	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:80550833G>A	uc003khc.3	+	6	711	c.469G>A	c.(469-471)GAG>AAG	p.E157K	RNU5E_uc011cto.1_Intron|CKMT2_uc010jaq.2_Missense_Mutation_p.E157K|CKMT2_uc003khd.3_Missense_Mutation_p.E157K|uc003khe.1_Intron|uc003khf.1_Intron|uc003khg.1_Intron	NM_001825	NP_001816	P17540	KCRS_HUMAN	sarcomeric mitochondrial creatine kinase	157					creatine metabolic process|muscle contraction	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;2.29e-44)|Epithelial(54;1.05e-38)|all cancers(79;4.15e-34)	Creatine(DB00148)	GCAGTTCGACGAGCATTACGT	0.637													31	63					0	0	1	0	0
CKMT2	1160	broad.mit.edu	37	5	80555016	80555016	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:80555016G>A	uc003khc.3	+	9	1199	c.957G>A	c.(955-957)TCG>TCA	p.S319S	RNU5E_uc011cto.1_Intron|CKMT2_uc010jaq.2_Silent_p.S319S|CKMT2_uc003khd.3_Silent_p.S319S|uc003khe.1_Intron|uc003khf.1_Intron|uc003khg.1_Intron	NM_001825	NP_001816	P17540	KCRS_HUMAN	sarcomeric mitochondrial creatine kinase	319	Phosphagen kinase C-terminal.				creatine metabolic process|muscle contraction	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;2.29e-44)|Epithelial(54;1.05e-38)|all cancers(79;4.15e-34)	Creatine(DB00148)	CCTGTCCTTCGAACCTTGGAA	0.512													12	142					0	0	1	0	0
ACOT12	134526	broad.mit.edu	37	5	80626663	80626663	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:80626663G>A	uc003khl.3	-	14	1543	c.1488C>T	c.(1486-1488)CTC>CTT	p.L496L	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	496	START.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		TAGCATGGATGAGAAATCCGG	0.433													6	69					0	0	1	0	0
ACOT12	134526	broad.mit.edu	37	5	80631636	80631636	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:80631636G>A	uc003khl.3	-	12	1268	c.1213C>T	c.(1213-1215)CGT>TGT	p.R405C	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	405	START.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		GACAAGAGACGATAAGCCAAA	0.348													32	102					0	0	1	0	0
SSBP2	23635	broad.mit.edu	37	5	80769541	80769541	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:80769541C>T	uc003kho.2	-	8	759	c.548G>A	c.(547-549)GGA>GAA	p.G183E	SSBP2_uc010jar.2_Missense_Mutation_p.G71E|SSBP2_uc003khn.2_Missense_Mutation_p.G57E|SSBP2_uc003khp.2_Missense_Mutation_p.G183E|SSBP2_uc011ctp.1_Missense_Mutation_p.G163E|SSBP2_uc011ctq.1_Missense_Mutation_p.G153E|SSBP2_uc011ctr.1_Missense_Mutation_p.G153E	NM_012446	NP_036578	P81877	SSBP2_HUMAN	single-stranded DNA binding protein 2	183	Gly-rich.|Pro-rich.			MTPPRGMVPLGP -> NDSSKRNGCLRTTVLTPGLSL (in Ref. 2; AAD27781).	regulation of transcription, DNA-dependent	cytoplasm|nucleus	single-stranded DNA binding		SSBP2/JAK2(4)	haematopoietic_and_lymphoid_tissue(4)|skin(1)	5		Lung NSC(167;0.00154)|all_lung(232;0.00179)|Ovarian(174;0.0338)		OV - Ovarian serous cystadenocarcinoma(54;1.07e-41)|Epithelial(54;2.79e-35)|all cancers(79;1.18e-29)		GGGCACCATTCCTCTTGGAGG	0.289													19	45					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82785996	82785996	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82785996T>C	uc003kii.3	+	3	506	c.150T>C	c.(148-150)CCT>CCC	p.P50P	VCAN_uc003kij.3_Silent_p.P50P|VCAN_uc010jau.2_Silent_p.P50P|VCAN_uc003kik.3_Silent_p.P50P|VCAN_uc003kih.3_Silent_p.P50P	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	50	Ig-like V-type.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CAACGATGCCTACTTTGCCAC	0.438													55	93					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82807962	82807962	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82807962C>T	uc003kii.3	+	6	1145	c.789C>T	c.(787-789)TTC>TTT	p.F263F	VCAN_uc003kij.3_Silent_p.F263F|VCAN_uc010jau.2_Silent_p.F263F|VCAN_uc003kik.3_Silent_p.F263F|VCAN_uc003kih.3_Silent_p.F263F	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	263	Link 2.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AATTCACCTTCGAGGAGGCTG	0.488													19	54					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82815175	82815175	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82815175G>A	uc003kii.3	+	7	1406	c.1050G>A	c.(1048-1050)GAG>GAA	p.E350E	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Silent_p.E350E|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	350	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TAGCTAAAGAGGCTACAACCA	0.373													35	80					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82816544	82816544	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82816544G>A	uc003kii.3	+	7	2775	c.2419G>A	c.(2419-2421)GAA>AAA	p.E807K	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.E807K|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	807	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GTCATGGGATGAAGATAATAC	0.413													15	97					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82834003	82834003	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82834003G>A	uc003kii.3	+	8	5537	c.5181G>A	c.(5179-5181)GAG>GAA	p.E1727E	VCAN_uc003kij.3_Silent_p.E740E|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.E391E	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1727	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AAAGGAAGGAGGAGGAGGGAA	0.403													37	93					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82834819	82834820	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82834819_82834820CC>TT	uc003kii.3	+	8	6353_6354	c.5997_5998CC>TT	c.(5995-6000)TTCCCC>TTTTCC	p.P2000S	VCAN_uc003kij.3_Missense_Mutation_p.P1013S|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.P664S	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2000	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CTTCAGCCTTCCCCTGGGAAGA	0.51													22	54					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82835440	82835440	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82835440C>T	uc003kii.3	+	8	6974	c.6618C>T	c.(6616-6618)TTC>TTT	p.F2206F	VCAN_uc003kij.3_Silent_p.F1219F|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.F870F	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2206	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CACATTTTTTCTTAGCTACTG	0.373													35	98					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82835853	82835853	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82835853C>T	uc003kii.3	+	8	7387	c.7031C>T	c.(7030-7032)CCC>CTC	p.P2344L	VCAN_uc003kij.3_Missense_Mutation_p.P1357L|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.P1008L	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2344	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GCAGAAGGACCCACGGTGGCA	0.468													21	82					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82836319	82836319	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82836319C>T	uc003kii.3	+	8	7853	c.7497C>T	c.(7495-7497)TCC>TCT	p.S2499S	VCAN_uc003kij.3_Silent_p.S1512S|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.S1163S	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2499	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		ACAAAAGCTCCCCTGATCCAA	0.463													12	76					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82837305	82837306	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82837305_82837306CC>TT	uc003kii.3	+	8	8839_8840	c.8483_8484CC>TT	c.(8482-8484)CCC>CTT	p.P2828L	VCAN_uc003kij.3_Missense_Mutation_p.P1841L|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.P1492L	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2828	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CCATCATCTCCCCTCACTATCT	0.5													21	127					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82837421	82837421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82837421G>A	uc003kii.3	+	8	8955	c.8599G>A	c.(8599-8601)GAA>AAA	p.E2867K	VCAN_uc003kij.3_Missense_Mutation_p.E1880K|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.E1531K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2867	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TTCTTTTAAGGAAATTCATGT	0.458													32	108					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82837712	82837712	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82837712G>A	uc003kii.3	+	8	9246	c.8890G>A	c.(8890-8892)GAT>AAT	p.D2964N	VCAN_uc003kij.3_Missense_Mutation_p.D1977N|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.D1628N	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2964	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TACAACTGCCGATGAAATTGA	0.463													61	147					0	0	1	0	0
HAPLN1	1404	broad.mit.edu	37	5	82937540	82937540	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82937540G>A	uc003kim.2	-	4	911	c.840C>T	c.(838-840)CTC>CTT	p.L280L	HAPLN1_uc003kin.2_Silent_p.L280L	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	280	Link 2.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		CACCATCATTGAGACAAGCTT	0.512													74	194					0	0	1	0	0
HAPLN1	1404	broad.mit.edu	37	5	82940393	82940393	+	Silent	SNP	G	A	A	rs113269048	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:82940393G>A	uc003kim.2	-	3	635	c.564C>T	c.(562-564)ATC>ATT	p.I188I	HAPLN1_uc003kin.2_Silent_p.I188I	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	188	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		CGAAGGAGGCGATCACAGCAT	0.582													16	45					0	0	1	0	0
EDIL3	10085	broad.mit.edu	37	5	83433134	83433134	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:83433134C>T	uc003kio.1	-	5	813	c.394G>A	c.(394-396)GGA>AGA	p.G132R	EDIL3_uc003kip.1_Missense_Mutation_p.G122R	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	132	EGF-like 3.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		GTACATATTCCACCATTTTTG	0.328													51	115					0	0	1	0	0
EDIL3	10085	broad.mit.edu	37	5	83549998	83549998	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:83549998C>T	uc003kio.1	-	2	519	c.100G>A	c.(100-102)GGA>AGA	p.G34R	EDIL3_uc003kip.1_Missense_Mutation_p.G34R	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	34	EGF-like 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		CAGATACCTCCATTTTCACAT	0.393													25	46					0	0	1	0	0
MBLAC2	153364	broad.mit.edu	37	5	89757138	89757138	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89757138G>A	uc003kjp.2	-	2	1162	c.686C>T	c.(685-687)CCT>CTT	p.P229L		NM_203406	NP_981951	Q68D91	MBLC2_HUMAN	beta-lactamase-like	229							hydrolase activity|metal ion binding				0						GAAGTGCCCAGGAAGCACCTT	0.423													15	114					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89924433	89924433	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89924433G>A	uc003kju.2	+	8	1389	c.1293G>A	c.(1291-1293)GCG>GCA	p.A431A	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	431	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATGTCTCTGCGAATTGGGTGT	0.418													20	69					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89925205	89925205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89925205G>A	uc003kju.2	+	9	1784	c.1688G>A	c.(1687-1689)GGA>GAA	p.G563E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	563	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATTCCTGCTGGAGCTGTGGAC	0.398													11	57					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89938713	89938713	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89938713G>A	uc003kju.2	+	13	2504	c.2408G>A	c.(2407-2409)GGG>GAG	p.G803E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	803	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CGATCAAGGGGGTCCCTTGTT	0.408													40	107					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89939773	89939773	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89939773G>A	uc003kju.2	+	14	2803	c.2707G>A	c.(2707-2709)GAA>AAA	p.E903K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	903	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GATGATAAATGAAAGCAAAGG	0.294													6	20					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89939785	89939785	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89939785G>A	uc003kju.2	+	14	2815	c.2719G>A	c.(2719-2721)GAT>AAT	p.D907N	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	907	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAGCAAAGGAGATGCTATCTA	0.274													5	19					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89941791	89941791	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89941791G>A	uc003kju.2	+	16	3001	c.2905G>A	c.(2905-2907)GAA>AAA	p.E969K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	969	Extracellular (Potential).|Calx-beta 7.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAAGATTCCAGAAGAAATGGA	0.323													9	32					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89943398	89943398	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89943398G>A	uc003kju.2	+	17	3202	c.3106G>A	c.(3106-3108)GTC>ATC	p.V1036I	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1036	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GACTTGCATGGTCCAGTATGC	0.438													23	73					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89948163	89948163	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89948163G>A	uc003kju.2	+	19	3513	c.3417G>A	c.(3415-3417)TGG>TGA	p.W1139*	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1139	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TATTTTGTAGGATTTTGAGGC	0.343													39	111					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89949407	89949407	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89949407C>T	uc003kju.2	+	20	4112	c.4016C>T	c.(4015-4017)ACT>ATT	p.T1339I	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1339	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GCATTTGGGACTGTTAATCCA	0.448													13	25					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89949435	89949435	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89949435G>A	uc003kju.2	+	20	4140	c.4044G>A	c.(4042-4044)AGG>AGA	p.R1348R	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1348	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATCCCTCCAGGAATAATACAA	0.448													7	18					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89949527	89949527	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89949527G>A	uc003kju.2	+	20	4232	c.4136G>A	c.(4135-4137)GGA>GAA	p.G1379E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1379	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GACGGTAATGGAAGCATCTAC	0.408													4	19					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89953918	89953918	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89953918C>T	uc003kju.2	+	21	4671	c.4575C>T	c.(4573-4575)TTC>TTT	p.F1525F	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1525	Calx-beta 10.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACAAATCATTCATTATTTCTG	0.358													36	94					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89968486	89968486	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89968486G>A	uc003kju.2	+	22	4972	c.4876G>A	c.(4876-4878)GAC>AAC	p.D1626N	GPR98_uc003kjt.2_5'UTR|GPR98_uc010jba.1_RNA	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1626	Calx-beta 11.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCTTGTTGATGACTTTGCTAA	0.403													38	79					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89971131	89971131	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89971131C>T	uc003kju.2	+	24	5278	c.5182C>T	c.(5182-5184)CCA>TCA	p.P1728S	GPR98_uc003kjt.2_5'UTR|GPR98_uc010jba.1_RNA	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1728	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAGCAGCGTTCCACATATCAC	0.547													11	19					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89979796	89979796	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89979796G>A	uc003kju.2	+	28	6154	c.6058G>A	c.(6058-6060)GAT>AAT	p.D2020N	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2020	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AACACTAGATGATATGGAAAA	0.393													15	43					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89979993	89979993	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:89979993G>A	uc003kju.2	+	28	6351	c.6255G>A	c.(6253-6255)GCG>GCA	p.A2085A	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2085	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTTTAGTAGCGAAAGTACAGA	0.328													11	20					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90012335	90012335	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90012335A>C	uc003kju.2	+	43	9332	c.9236A>C	c.(9235-9237)AAC>ACC	p.N3079T	GPR98_uc003kjt.2_Missense_Mutation_p.N785T|GPR98_uc003kjv.2_Missense_Mutation_p.N679T	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3079	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTATCATTTAACAACAGTGAG	0.388													4	33					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90016011	90016011	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90016011G>A	uc003kju.2	+	44	9690	c.9594G>A	c.(9592-9594)GGG>GGA	p.G3198G	GPR98_uc003kjt.2_Silent_p.G904G|GPR98_uc003kjv.2_Silent_p.G798G	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3198	Extracellular (Potential).|EAR 1.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCCCTTTGGGGCTATTCAGTA	0.368													17	19					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90016808	90016808	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90016808G>A	uc003kju.2	+	45	9776	c.9680G>A	c.(9679-9681)CGA>CAA	p.R3227Q	GPR98_uc003kjt.2_Missense_Mutation_p.R933Q|GPR98_uc003kjv.2_Missense_Mutation_p.R827Q	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3227	Extracellular (Potential).|EAR 1.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AATGTATCTCGAACTAATGGC	0.393													51	114					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90020763	90020763	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90020763C>T	uc003kju.2	+	46	9959	c.9863C>T	c.(9862-9864)TCT>TTT	p.S3288F	GPR98_uc003kjt.2_Missense_Mutation_p.S994F|GPR98_uc003kjv.2_Missense_Mutation_p.S888F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3288	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGAAAATCATCTGTTACTGTT	0.294													18	45					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90024714	90024714	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90024714G>A	uc003kju.2	+	49	10486	c.10390G>A	c.(10390-10392)GAT>AAT	p.D3464N	GPR98_uc003kjt.2_Missense_Mutation_p.D1170N|GPR98_uc003kjv.2_Missense_Mutation_p.D1064N	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3464	Extracellular (Potential).|EAR 5.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCAGCCAATGATATTTACCT	0.353													15	28					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90049587	90049587	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90049587C>A	uc003kju.2	+	54	11414	c.11318C>A	c.(11317-11319)CCT>CAT	p.P3773H	GPR98_uc003kjt.2_Missense_Mutation_p.P1479H|GPR98_uc003kjv.2_Missense_Mutation_p.P1373H	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3773	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AATGACTCACCTTTTGGCTTG	0.428													5	26					0.000602214	0.000602809	1	1	0
GPR98	84059	broad.mit.edu	37	5	90052277	90052277	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90052277C>T	uc003kju.2	+	56	11683	c.11587C>T	c.(11587-11589)CTT>TTT	p.L3863F	GPR98_uc003kjt.2_Missense_Mutation_p.L1569F|GPR98_uc003kjv.2_Missense_Mutation_p.L1463F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3863	Extracellular (Potential).|Calx-beta 25.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCAGGATGACCTTCCTGAATT	0.408													44	109					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90077323	90077323	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90077323C>T	uc003kju.2	+	65	13255	c.13159C>T	c.(13159-13161)CGC>TGC	p.R4387C	GPR98_uc003kjt.2_Missense_Mutation_p.R2093C|GPR98_uc003kjw.2_Missense_Mutation_p.R48C	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4387	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTCCATTGTTCGCATCATAAT	0.363													10	23					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90086735	90086735	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90086735C>T	uc003kju.2	+	70	14185	c.14089C>T	c.(14089-14091)CTT>TTT	p.L4697F	GPR98_uc003kjt.2_Missense_Mutation_p.L2403F|GPR98_uc003kjw.2_Missense_Mutation_p.L358F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4697	Calx-beta 32.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGAAGACTTTCTTTCCACCAG	0.348													40	85					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90119263	90119263	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90119263C>T	uc003kju.2	+	76	16314	c.16218C>T	c.(16216-16218)GTC>GTT	p.V5406V	GPR98_uc003kjt.2_Silent_p.V3112V|GPR98_uc003kjw.2_Silent_p.V1067V	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5406	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATGTCAAGGTCTTTTGGCGAG	0.463													24	59					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90281242	90281242	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90281242G>A	uc003kju.2	+	85	18151	c.18055G>A	c.(18055-18057)GGA>AGA	p.G6019R	GPR98_uc003kjt.2_Missense_Mutation_p.G3725R|GPR98_uc003kjw.2_Missense_Mutation_p.G1680R|GPR98_uc003kjx.2_Missense_Mutation_p.G47R	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	6019	Helical; (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCTGAGTTGGGGACTACCAGC	0.418													12	40					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90281262	90281262	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90281262G>A	uc003kju.2	+	85	18171	c.18075G>A	c.(18073-18075)GTG>GTA	p.V6025V	GPR98_uc003kjt.2_Silent_p.V3731V|GPR98_uc003kjw.2_Silent_p.V1686V|GPR98_uc003kjx.2_Silent_p.V53V	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	6025	Helical; (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTTTTGTGGTGATTCTCCTCA	0.438													8	51					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90459638	90459638	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:90459638G>A	uc003kju.2	+	90	18938	c.18842G>A	c.(18841-18843)GGC>GAC	p.G6281D	GPR98_uc003kjt.2_Missense_Mutation_p.G3987D|GPR98_uc003kjw.2_Missense_Mutation_p.G1942D|GPR98_uc003kjx.2_Missense_Mutation_p.G309D	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	6281	Cytoplasmic (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCTGGTCAAGGCAGCCAGGAG	0.488													4	12					0	0	1	0	0
NR2F1	7025	broad.mit.edu	37	5	92923983	92923983	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:92923983C>T	uc003kkj.2	+	2	2511	c.824C>T	c.(823-825)CCG>CTG	p.P275L		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	275					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		CACGTGGCGCCGTTGCTGGCC	0.662													23	59					0	0	1	0	0
NR2F1	7025	broad.mit.edu	37	5	92924027	92924027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:92924027G>A	uc003kkj.2	+	2	2555	c.868G>A	c.(868-870)GAC>AAC	p.D290N		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	290					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		CATGTCTGCCGACCGCGTCGT	0.657													14	53					0	0	1	0	0
C5orf36	285600	broad.mit.edu	37	5	93856513	93856513	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:93856513G>A	uc011cuk.1	-	5	667	c.410C>T	c.(409-411)TCT>TTT	p.S137F	C5orf36_uc003kkp.2_Missense_Mutation_p.S137F	NM_001145678	NP_001139150	Q8IV33	K0825_HUMAN	hypothetical protein LOC285600 isoform 1	137											0		all_cancers(142;2.12e-08)|all_epithelial(76;5.95e-11)|all_lung(232;0.000996)|Lung NSC(167;0.0108)|Ovarian(174;0.0218)|Colorectal(57;0.0329)|Breast(839;0.214)|Lung SC(612;0.236)		all cancers(79;3.96e-19)		GAAATGGAAAGATGTTCCACT	0.413													13	42					0	0	1	0	0
MCTP1	79772	broad.mit.edu	37	5	94114841	94114841	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:94114841C>T	uc003kkx.2	-	19	2584	c.2584G>A	c.(2584-2586)GAA>AAA	p.E862K	MCTP1_uc003kkv.2_Missense_Mutation_p.E641K|MCTP1_uc003kkw.2_Missense_Mutation_p.E555K|MCTP1_uc003kku.2_Missense_Mutation_p.E378K	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	862					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		TCTTCTTCTTCCTCGTCCTCT	0.418													24	105					0	0	1	0	0
MCTP1	79772	broad.mit.edu	37	5	94204131	94204131	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:94204131C>T	uc003kkx.2	-	17	2343	c.2343G>A	c.(2341-2343)ATG>ATA	p.M781I	MCTP1_uc003kkv.2_Missense_Mutation_p.M560I|MCTP1_uc003kkw.2_Missense_Mutation_p.M514I|MCTP1_uc003kkz.2_Missense_Mutation_p.M442I|MCTP1_uc003kku.2_Missense_Mutation_p.M297I	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	781					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		CACAACGTTTCATTCTGATAA	0.358													8	30					0	0	1	0	0
MCTP1	79772	broad.mit.edu	37	5	94224659	94224659	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:94224659G>A	uc003kkx.2	-	12	1858	c.1858C>T	c.(1858-1860)CAC>TAC	p.H620Y	MCTP1_uc003kkv.2_Missense_Mutation_p.H399Y|MCTP1_uc003kkw.2_Missense_Mutation_p.H353Y|MCTP1_uc003kkz.2_Missense_Mutation_p.H281Y|MCTP1_uc003kku.2_Missense_Mutation_p.H136Y	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	620	C2 3.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		TTCAGGTTGTGAAATATCCTC	0.433													37	75					0	0	1	0	0
MCTP1	79772	broad.mit.edu	37	5	94353077	94353077	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:94353077G>A	uc003kkx.2	-	2	832	c.832C>T	c.(832-834)CGA>TGA	p.R278*	MCTP1_uc003kkv.2_Nonsense_Mutation_p.R57*|MCTP1_uc003kkw.2_Nonsense_Mutation_p.R57*|MCTP1_uc003kkz.2_Intron	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	278	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		TTACCTCCTCGATCTCGAGCA	0.413													60	124					0	0	1	0	0
FAM81B	153643	broad.mit.edu	37	5	94749806	94749806	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:94749806G>A	uc003kla.1	+	4	495	c.449G>A	c.(448-450)CGA>CAA	p.R150Q	FAM81B_uc010jbe.1_5'UTR	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	150										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		CATGGCTTTCGAAAAGAGGAA	0.493													41	81					0	0	1	0	0
FAM81B	153643	broad.mit.edu	37	5	94772575	94772575	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:94772575G>A	uc003kla.1	+	7	904	c.858G>A	c.(856-858)GGG>GGA	p.G286G	FAM81B_uc010jbe.1_Silent_p.G82G	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	286										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		TGGTCCAGGGGGATTATCGCC	0.398													18	50					0	0	1	0	0
FAM81B	153643	broad.mit.edu	37	5	94772593	94772593	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:94772593G>A	uc003kla.1	+	7	922	c.876G>A	c.(874-876)ATG>ATA	p.M292I	FAM81B_uc010jbe.1_Missense_Mutation_p.M88I	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	292										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		GCCACGAAATGAACCTTTTGG	0.378													15	44					0	0	1	0	0
TTC37	9652	broad.mit.edu	37	5	94878997	94878997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:94878997G>A	uc003klb.2	-	5	395	c.125C>T	c.(124-126)GCC>GTC	p.A42V	TTC37_uc010jbf.1_Intron	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	42	TPR 2.						binding			ovary(3)|pancreas(1)	4						AAAAACCCAGGCATTATAGTT	0.353													16	127					0	0	1	0	0
SPATA9	83890	broad.mit.edu	37	5	94994441	94994441	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:94994441C>T	uc003klj.1	-	5	807	c.651G>A	c.(649-651)CCG>CCA	p.P217P	SPATA9_uc010jbh.1_Intron|SPATA9_uc003klh.1_RNA|SPATA9_uc003kli.1_RNA	NM_031952	NP_114158	Q9BWV2	SPAT9_HUMAN	spermatogenesis associated 9	217					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane					0		all_cancers(142;1.28e-06)|all_epithelial(76;1.55e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)|Colorectal(57;0.0846)|Breast(839;0.198)		all cancers(79;8.91e-16)		CTGGCTTCTCCGGCAATGACC	0.403													29	51					0	0	1	0	0
SPATA9	83890	broad.mit.edu	37	5	95018270	95018270	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:95018270C>T	uc003klj.1	-	2	268	c.112G>A	c.(112-114)GAA>AAA	p.E38K	SPATA9_uc010jbh.1_RNA|SPATA9_uc003klh.1_RNA|SPATA9_uc003kli.1_RNA	NM_031952	NP_114158	Q9BWV2	SPAT9_HUMAN	spermatogenesis associated 9	38					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane					0		all_cancers(142;1.28e-06)|all_epithelial(76;1.55e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)|Colorectal(57;0.0846)|Breast(839;0.198)		all cancers(79;8.91e-16)		GTGGGAAATTCATCTTTAAAC	0.313													23	66					0	0	1	0	0
PCSK1	5122	broad.mit.edu	37	5	95748146	95748146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:95748146G>A	uc003kls.1	-	7	964	c.758C>T	c.(757-759)TCA>TTA	p.S253L	PCSK1_uc010jbi.1_Missense_Mutation_p.S14L	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	253	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GAATCCAATTGAACTGGCCTC	0.468													20	56					0	0	1	0	0
PCSK1	5122	broad.mit.edu	37	5	95764944	95764944	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:95764944G>A	uc003kls.1	-	2	464	c.258C>T	c.(256-258)ATC>ATT	p.I86I		NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	86					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ATCTCTTAGTGATATGAAAGG	0.318													29	61					0	0	1	0	0
LNPEP	4012	broad.mit.edu	37	5	96315551	96315551	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:96315551C>T	uc003kmv.1	+	2	1243	c.729C>T	c.(727-729)ATC>ATT	p.I243I	LNPEP_uc003kmw.1_Silent_p.I229I	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	243	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		ATGGACAGATCGCCATTGTTG	0.408													5	78					0	0	1	0	0
LNPEP	4012	broad.mit.edu	37	5	96332162	96332162	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:96332162C>T	uc003kmv.1	+	7	1990	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F	LNPEP_uc003kmw.1_Silent_p.F478F	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	492	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		TTGCCACTTTCATGGAGTATT	0.393													11	53					0	0	1	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147828	100147828	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:100147828C>T	uc003knk.2	-	5	1131	c.803G>A	c.(802-804)TGG>TAG	p.W268*		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	268	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		GTTGGTCAGCCAGTAACTGGA	0.363													19	64					0	0	1	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100222168	100222168	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:100222168G>A	uc003knk.2	-	3	710	c.382C>T	c.(382-384)CTA>TTA	p.L128L	ST8SIA4_uc003knl.2_Silent_p.L128L	NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	128	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		ACTTCAGGTAGGAGGCTATGT	0.438													42	129					0	0	1	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101583015	101583015	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101583015G>A	uc003knm.2	-	10	2039	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	584	Helical; Name=10; (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		TTACAATAAAGAAAATGCAAA	0.358													54	86					0	0	1	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101592853	101592853	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101592853C>T	uc003knm.2	-	8	1722	c.1435G>A	c.(1435-1437)GAG>AAG	p.E479K		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	479	Extracellular (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		GCAAATGGCTCATTTTCACAT	0.328													23	56					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101748762	101748762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101748762C>T	uc003knn.2	-	9	1730	c.1558G>A	c.(1558-1560)GAT>AAT	p.D520N	SLCO6A1_uc003kno.2_Missense_Mutation_p.D267N|SLCO6A1_uc003knp.2_Missense_Mutation_p.D520N|SLCO6A1_uc003knq.2_Missense_Mutation_p.D458N	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	520	Extracellular (Potential).|Kazal-like.					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TCAATATCATCTCTTCCACAT	0.303													17	36					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101755566	101755566	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101755566G>A	uc003knn.2	-	8	1608	c.1436C>T	c.(1435-1437)CCA>CTA	p.P479L	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Missense_Mutation_p.P479L|SLCO6A1_uc003knq.2_Missense_Mutation_p.P417L	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	479	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AAATTGCACTGGATTACAGCG	0.323													49	130					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101813497	101813497	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101813497G>A	uc003knn.2	-	3	857	c.685C>T	c.(685-687)CTG>TTG	p.L229L	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Silent_p.L229L|SLCO6A1_uc003knq.2_Intron	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	229	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AAGAAAGACAGGTATTTTGAT	0.363													39	160					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834206	101834206	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101834206G>A	uc003knn.2	-	1	515	c.343C>T	c.(343-345)CTG>TTG	p.L115L	SLCO6A1_uc003kno.2_Silent_p.L115L|SLCO6A1_uc003knp.2_Silent_p.L115L|SLCO6A1_uc003knq.2_Silent_p.L115L	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	115	Helical; Name=1; (Potential).|Cys-rich.					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CATATGAGCAGGATGCAGTAG	0.572													21	49					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834305	101834305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101834305C>T	uc003knn.2	-	1	416	c.244G>A	c.(244-246)GAT>AAT	p.D82N	SLCO6A1_uc003kno.2_Missense_Mutation_p.D82N|SLCO6A1_uc003knp.2_Missense_Mutation_p.D82N|SLCO6A1_uc003knq.2_Missense_Mutation_p.D82N	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	82	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AAACTGTCATCCACTTCTCCC	0.493													53	114					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834355	101834355	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101834355C>T	uc003knn.2	-	1	366	c.194G>A	c.(193-195)CGA>CAA	p.R65Q	SLCO6A1_uc003kno.2_Missense_Mutation_p.R65Q|SLCO6A1_uc003knp.2_Missense_Mutation_p.R65Q|SLCO6A1_uc003knq.2_Missense_Mutation_p.R65Q	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	65	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TTTCCTTTTTCGGAAACCGCC	0.542													80	215					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834534	101834534	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101834534G>A	uc003knn.2	-	1	187	c.15C>T	c.(13-15)GTC>GTT	p.V5V	SLCO6A1_uc003kno.2_Silent_p.V5V|SLCO6A1_uc003knp.2_Silent_p.V5V|SLCO6A1_uc003knq.2_Silent_p.V5V	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	5	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AGTGCCGGGCGACGCCTACGA	0.706													29	193					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834543	101834543	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:101834543G>A	uc003knn.2	-	1	178	c.6C>T	c.(4-6)TTC>TTT	p.F2F	SLCO6A1_uc003kno.2_Silent_p.F2F|SLCO6A1_uc003knp.2_Silent_p.F2F|SLCO6A1_uc003knq.2_Silent_p.F2F	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	2	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CGACGCCTACGAACATGGCTC	0.711													62	137					0	0	1	0	0
PAM	5066	broad.mit.edu	37	5	102309921	102309921	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:102309921C>T	uc003knw.2	+	14	1637	c.1264C>T	c.(1264-1266)CTG>TTG	p.L422L	PAM_uc003kns.2_Intron|PAM_uc003knt.2_Silent_p.L422L|PAM_uc003knu.2_Silent_p.L422L|PAM_uc003knv.2_Silent_p.L422L|PAM_uc011cuz.1_Silent_p.L325L|PAM_uc003knx.1_Intron|PAM_uc003kny.1_RNA	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	422	Peptidylglycine alpha-hydroxylating monooxygenase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	AGAGTCAGACCTGGTAGCTGA	0.423													17	73					0	0	1	0	0
GIN1	54826	broad.mit.edu	37	5	102440250	102440250	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:102440250G>A	uc003koa.1	-	4	716	c.634C>T	c.(634-636)CAA>TAA	p.Q212*	GIN1_uc003kob.1_Nonsense_Mutation_p.Q65*|GIN1_uc003koc.1_Nonsense_Mutation_p.Q212*	NM_017676	NP_060146	Q9NXP7	GIN1_HUMAN	zinc finger, H2C2 domain containing	212	Integrase catalytic.				DNA integration		DNA binding			ovary(1)|skin(1)	2		all_cancers(142;3.23e-07)|all_epithelial(76;3.64e-10)|Prostate(80;0.00914)|Ovarian(225;0.0139)|Lung NSC(167;0.0212)|Colorectal(57;0.0249)|all_lung(232;0.0283)		Epithelial(69;3.57e-14)|COAD - Colon adenocarcinoma(37;0.00794)		CTTACCTGTTGAATGAATTCA	0.343													8	21					0	0	1	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102508940	102508940	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:102508940C>T	uc003kod.3	+	20	2887	c.2368C>T	c.(2368-2370)CTT>TTT	p.L790F	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.L790F|PPIP5K2_uc003kof.2_Missense_Mutation_p.L91F	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	790					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						TCGCTCAGACCTTCAGAGGAC	0.363													29	54					0	0	1	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102509599	102509599	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:102509599C>T	uc003kod.3	+	21	2971	c.2452C>T	c.(2452-2454)CGT>TGT	p.R818C	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.R818C|PPIP5K2_uc003kof.2_Missense_Mutation_p.R119C	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	818					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						ACGTCATGTTCGTACTAGATT	0.333													21	100					0	0	1	0	0
RAB9BP1	9366	broad.mit.edu	37	5	104435182	104435182	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:104435182G>A	uc003kok.2	+	1		c.8G>A				NR_000039				Homo sapiens RAB9, member RAS oncogene family, pseudogene 1 (RAB9P1), non-coding RNA.												0						TTAACGGCAGGAAAATCATCA	0.358													10	35					0	0	1	0	0
RAB9BP1	9366	broad.mit.edu	37	5	104435525	104435525	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:104435525C>T	uc003kok.2	+	1		c.351C>T				NR_000039				Homo sapiens RAB9, member RAS oncogene family, pseudogene 1 (RAB9P1), non-coding RNA.												0						CAAAAGCTTTCCTTTTGTAAT	0.413													13	41					0	0	1	0	0
FER	2241	broad.mit.edu	37	5	108523217	108523217	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:108523217C>T	uc003kop.1	+	20	2794	c.2410C>T	c.(2410-2412)CGC>TGC	p.R804C	FER_uc011cvg.1_Missense_Mutation_p.R629C	NM_005246	NP_005237	P16591	FER_HUMAN	fer (fps/fes related) tyrosine kinase	804	Protein kinase.				intracellular signal transduction|peptidyl-tyrosine phosphorylation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|kidney(1)	5		all_cancers(142;2.86e-06)|all_epithelial(76;9.81e-08)|Prostate(80;0.00972)|Lung NSC(167;0.039)|Ovarian(225;0.0448)|all_lung(232;0.0496)|Colorectal(57;0.0986)|Breast(839;0.152)		OV - Ovarian serous cystadenocarcinoma(64;6.77e-10)|Epithelial(69;4.13e-08)|COAD - Colon adenocarcinoma(37;0.0174)		ACCTGAAAATCGCCCTAAGTT	0.453													24	64					0	0	1	0	0
MAN2A1	4124	broad.mit.edu	37	5	109103252	109103252	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:109103252C>T	uc003kou.1	+	6	1815	c.852C>T	c.(850-852)TCC>TCT	p.S284S		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	284	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		AACCTCGGTCCGGCTGGGCTA	0.388													51	92					0	0	1	0	0
MAN2A1	4124	broad.mit.edu	37	5	109103343	109103343	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:109103343C>T	uc003kou.1	+	6	1906	c.943C>T	c.(943-945)CAT>TAT	p.H315Y		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	315	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		CCAGAGAGTTCATTATGCAGT	0.423													62	139					0	0	1	0	0
MAN2A1	4124	broad.mit.edu	37	5	109124642	109124642	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:109124642C>T	uc003kou.1	+	11	2731	c.1768C>T	c.(1768-1770)CAT>TAT	p.H590Y		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	590	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		CAGACTTTTTCATTCGTTAAT	0.303													17	66					0	0	1	0	0
MAN2A1	4124	broad.mit.edu	37	5	109155434	109155434	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:109155434G>A	uc003kou.1	+	14	3137	c.2174G>A	c.(2173-2175)AGT>AAT	p.S725N		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	725	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		GAATCAGCAAGTTCAAATTCA	0.308													25	131					0	0	1	0	0
WDR36	134430	broad.mit.edu	37	5	110454763	110454763	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:110454763C>T	uc003kpd.2	+	17	2134	c.2017C>T	c.(2017-2019)CCT>TCT	p.P673S	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	673	WD 9.				response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		TTCTATGTCTCCTACTGGAGA	0.373													56	142					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110730466	110730466	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:110730466C>T	uc011cvj.1	+	6	544	c.445C>T	c.(445-447)CTG>TTG	p.L149L	CAMK4_uc003kpf.2_Silent_p.L149L|CAMK4_uc010jbv.2_5'UTR	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	149	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		TAAACAAATCCTGGAGGCAGT	0.398													30	39					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110809020	110809020	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:110809020C>T	uc011cvj.1	+	9	736	c.637C>T	c.(637-639)CTT>TTT	p.L213F	CAMK4_uc003kpf.2_Missense_Mutation_p.L213F|CAMK4_uc010jbv.2_Missense_Mutation_p.L16F	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	213	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		ACCTGAAATTCTTAGAGGTTG	0.318													34	131					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110819735	110819735	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:110819735G>A	uc011cvj.1	+	12	1092	c.993G>A	c.(991-993)AAG>AAA	p.K331K	CAMK4_uc003kpf.2_Silent_p.K331K|CAMK4_uc010jbv.2_Silent_p.K134K|CAMK4_uc003kpg.2_Silent_p.K22K	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	331	Calmodulin-binding (Potential).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		CAGCGGTGAAGGCTGTGGTGG	0.557													15	35					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110819862	110819862	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:110819862G>A	uc011cvj.1	+	12	1219	c.1120G>A	c.(1120-1122)GAA>AAA	p.E374K	CAMK4_uc003kpf.2_Missense_Mutation_p.E374K|CAMK4_uc010jbv.2_Missense_Mutation_p.E177K|CAMK4_uc003kpg.2_Missense_Mutation_p.E65K	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	374					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		AGCTATTCCAGAAGGAGAGAA	0.537													15	75					0	0	1	0	0
STARD4	134429	broad.mit.edu	37	5	110835662	110835662	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:110835662C>T	uc003kph.1	-	6	624	c.540G>A	c.(538-540)ATG>ATA	p.M180I	STARD4_uc010jbw.1_Missense_Mutation_p.M82I|STARD4_uc010jbx.1_Missense_Mutation_p.M82I|STARD4_uc003kpi.1_RNA	NM_139164	NP_631903	Q96DR4	STAR4_HUMAN	StAR-related lipid transfer (START) domain	180	START.				lipid transport		lipid binding			ovary(1)	1		all_cancers(142;0.00259)|all_epithelial(76;8.32e-05)|Prostate(80;0.0115)|Colorectal(10;0.0959)|Ovarian(225;0.156)|all_lung(232;0.18)|Lung NSC(167;0.248)		OV - Ovarian serous cystadenocarcinoma(64;4.91e-09)|Epithelial(69;1.39e-08)|all cancers(49;2.34e-06)|COAD - Colon adenocarcinoma(37;0.049)|Colorectal(14;0.138)		ACTGAGGAATCATCCCACGCA	0.413													50	97					0	0	1	0	0
STARD4	134429	broad.mit.edu	37	5	110835726	110835726	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:110835726G>A	uc003kph.1	-	6	560	c.476C>T	c.(475-477)CCA>CTA	p.P159L	STARD4_uc010jbw.1_Missense_Mutation_p.P61L|STARD4_uc010jbx.1_Missense_Mutation_p.P61L|STARD4_uc003kpi.1_RNA	NM_139164	NP_631903	Q96DR4	STAR4_HUMAN	StAR-related lipid transfer (START) domain	159	START.				lipid transport		lipid binding			ovary(1)	1		all_cancers(142;0.00259)|all_epithelial(76;8.32e-05)|Prostate(80;0.0115)|Colorectal(10;0.0959)|Ovarian(225;0.156)|all_lung(232;0.18)|Lung NSC(167;0.248)		OV - Ovarian serous cystadenocarcinoma(64;4.91e-09)|Epithelial(69;1.39e-08)|all cancers(49;2.34e-06)|COAD - Colon adenocarcinoma(37;0.049)|Colorectal(14;0.138)		GTCTTTAAGTGGAACACAAAA	0.413													34	79					0	0	1	0	0
C5orf13	9315	broad.mit.edu	37	5	111066648	111066648	+	Silent	SNP	G	A	A	rs11556173		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:111066648G>A	uc003kpl.2	-	3	656	c.177C>T	c.(175-177)TCC>TCT	p.S59S	C5orf13_uc011cvr.1_Silent_p.S103S|C5orf13_uc011cvs.1_Silent_p.S93S|C5orf13_uc003kpk.2_Intron|C5orf13_uc003kpm.2_Silent_p.S59S|C5orf13_uc011cvk.1_Silent_p.S59S|C5orf13_uc011cvl.1_Silent_p.S59S|C5orf13_uc011cvm.1_Silent_p.S59S|C5orf13_uc011cvn.1_Silent_p.S59S|C5orf13_uc011cvo.1_Silent_p.S59S|C5orf13_uc011cvp.1_Silent_p.S59S|C5orf13_uc011cvq.1_Silent_p.S59S	NM_001142483	NP_001135955	Q16612	NP311_HUMAN	neuronal protein 3.1 isoform a	59				S->A: Reduces protein degradation and induces glioma cell migration.|S->D: Accelerates protein degradation and reduces glioma cell migration.		cytoplasm		p.S59F(1)		skin(1)	1		all_cancers(142;0.00597)|all_epithelial(76;0.000144)|Prostate(80;0.0115)|Colorectal(10;0.0446)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;5.45e-09)|Epithelial(69;2e-08)|all cancers(49;1.9e-06)|COAD - Colon adenocarcinoma(37;0.0514)|Colorectal(14;0.0629)		TGATTCTTGGGGAGCGGAGTT	0.463													20	107					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111540084	111540084	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:111540084G>A	uc003kpv.1	-	15	1638	c.1364C>T	c.(1363-1365)CCT>CTT	p.P455L	EPB41L4A_uc003kpp.1_Missense_Mutation_p.P82L	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	455						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		CCTCCTCACAGGCTGTACAGA	0.483													57	131					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111540184	111540184	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:111540184C>T	uc003kpv.1	-	15	1538	c.1264G>A	c.(1264-1266)GGA>AGA	p.G422R	EPB41L4A_uc003kpp.1_Missense_Mutation_p.G49R	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	422						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TTGTAGAGTCCACTGGAGAGA	0.507													35	72					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111570421	111570421	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:111570421G>A	uc003kpv.1	-	12	1271	c.997C>T	c.(997-999)CTT>TTT	p.L333F		NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	333						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TGAATAGAAAGATCTCGGCTC	0.443													52	121					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111595608	111595608	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:111595608C>T	uc003kpv.1	-	8	985	c.711G>A	c.(709-711)AAG>AAA	p.K237K		NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	237	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TCCCCACTTGCTTTTTATTCT	0.408													30	83					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111616007	111616007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:111616007G>A	uc003kpv.1	-	3	492	c.218C>T	c.(217-219)CCT>CTT	p.P73L	EPB41L4A_uc003kpw.1_Missense_Mutation_p.P73L	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	73	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		GGTTTTTGCAGGATCCAGCCA	0.333													42	228					0	0	1	0	0
APC	324	broad.mit.edu	37	5	112162920	112162920	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:112162920G>C	uc010jby.2	+	12	1904	c.1524G>C	c.(1522-1524)TTG>TTC	p.L508F	APC_uc011cvt.1_Missense_Mutation_p.L490F|APC_uc003kpz.3_Missense_Mutation_p.L508F|APC_uc003kpy.3_Missense_Mutation_p.L508F|APC_uc010jbz.2_Missense_Mutation_p.L225F|APC_uc010jca.2_Intron	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	508	ARM 2.|Leu-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TGACAAACTTGACTTTTGGAG	0.333		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			8	80					0	0	1	0	0
SRP19	6728	broad.mit.edu	37	5	112227676	112227676	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:112227676G>A	uc011cvv.1	+	4	670	c.415G>A	c.(415-417)GAA>AAA	p.E139K	SRP19_uc011cvu.1_Missense_Mutation_p.E124K|REEP5_uc011cvw.1_Intron|REEP5_uc003kqe.1_Intron|REEP5_uc011cvx.1_Intron|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_Intron			P09132	SRP19_HUMAN	SubName: Full=Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		aaagttaaaggaacaatggaa	0.159													9	32					0	0	1	0	0
MCC	4163	broad.mit.edu	37	5	112720813	112720813	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:112720813G>A	uc003kql.3	-	2	683	c.267C>T	c.(265-267)TCC>TCT	p.S89S	MCC_uc003kqk.3_RNA	NM_001085377	NP_001078846	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 1	Error:Variant_position_missing_in_P23508_after_alignment					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		AATCCTGAAAGGAAATCTTCC	0.448													45	104					0	0	1	0	0
TSSK1B	83942	broad.mit.edu	37	5	112770107	112770107	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:112770107G>A	uc003kqm.2	-	1	622	c.430C>T	c.(430-432)CTT>TTT	p.L144F	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	144	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		TCCTTGTCAAGGAGAAGGTTG	0.547													30	41					0	0	1	0	0
TSSK1B	83942	broad.mit.edu	37	5	112770152	112770152	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:112770152C>T	uc003kqm.2	-	1	577	c.385G>A	c.(385-387)GAC>AAC	p.D129N	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	129	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		ACGTCCAGGTCGTGGCAGTAC	0.562													10	55					0	0	1	0	0
YTHDC2	64848	broad.mit.edu	37	5	112929053	112929053	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:112929053C>A	uc003kqn.2	+	29	4449	c.4266C>A	c.(4264-4266)CCC>CCA	p.P1422P		NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	1422							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		AACGTCTTCCCTTGGGAGAAA	0.368													24	64					4.7796e-09	4.79449e-09	1	1	0
KCNN2	3781	broad.mit.edu	37	5	113698904	113698904	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:113698904C>T	uc003kqo.2	+	1	889	c.432C>T	c.(430-432)TTC>TTT	p.F144F		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	144	Helical; Name=Segment S1; (Potential).					integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		TCGGCATGTTCGGCATCGTGG	0.612													9	37					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115348125	115348125	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:115348125C>T	uc003kro.2	+	15	2466	c.2302C>T	c.(2302-2304)CGT>TGT	p.R768C	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	768	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						AACTATAATTCGTGAAAATGT	0.289													39	134					0	0	1	0	0
SEMA6A	57556	broad.mit.edu	37	5	115782979	115782979	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:115782979G>T	uc010jck.2	-	19	3132	c.2423C>A	c.(2422-2424)TCC>TAC	p.S808Y	SEMA6A_uc003krx.3_Missense_Mutation_p.S825Y|SEMA6A_uc011cwe.1_Missense_Mutation_p.S187Y|SEMA6A_uc003krv.3_Missense_Mutation_p.S235Y|SEMA6A_uc003krw.3_Missense_Mutation_p.S285Y|SEMA6A_uc010jcj.2_Missense_Mutation_p.S352Y	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	808	Cytoplasmic (Potential).|Pro-rich.				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		GTGGCTGGGGGAGGCCCGCAG	0.642													26	64					9.04412e-07	9.06166e-07	1	1	0
SEMA6A	57556	broad.mit.edu	37	5	115815860	115815860	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:115815860G>A	uc010jck.2	-	12	1917	c.1208C>T	c.(1207-1209)CCC>CTC	p.P403L	SEMA6A_uc003krx.3_Missense_Mutation_p.P403L|SEMA6A_uc003krw.3_5'Flank|SEMA6A_uc010jcj.2_Missense_Mutation_p.P6L	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	403	Sema.|Extracellular (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		GAAGATGGAGGGCACTGCCTC	0.498													38	79					0	0	1	0	0
DTWD2	285605	broad.mit.edu	37	5	118176751	118176751	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:118176751G>A	uc003ksa.2	-	6	792	c.758C>T	c.(757-759)TCC>TTC	p.S253F		NM_173666	NP_775937	Q8NBA8	DTWD2_HUMAN	DTW domain containing 2	253											0		all_epithelial(76;0.0982)|Prostate(80;0.121)		OV - Ovarian serous cystadenocarcinoma(64;0.000228)|Epithelial(69;0.000941)|all cancers(49;0.00939)		AAGTTGAAAGGAGCATAAAGC	0.373													9	19					0	0	1	0	0
DMXL1	1657	broad.mit.edu	37	5	118456684	118456684	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:118456684C>T	uc003ksd.2	+	9	1133	c.952C>T	c.(952-954)CGT>TGT	p.R318C	DMXL1_uc010jcl.1_Missense_Mutation_p.R318C|DMXL1_uc003ksc.1_Missense_Mutation_p.R318C	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	318										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		GAGACATTTTCGTAGAGGTCG	0.398													12	141					0	0	1	0	0
DMXL1	1657	broad.mit.edu	37	5	118469492	118469492	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:118469492C>T	uc003ksd.2	+	12	2054	c.1873C>T	c.(1873-1875)CTC>TTC	p.L625F	DMXL1_uc010jcl.1_Missense_Mutation_p.L625F|DMXL1_uc003ksc.1_Missense_Mutation_p.L625F	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	625										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TTCTACTGTTCTCAGTATTTC	0.378													25	147					0	0	1	0	0
DMXL1	1657	broad.mit.edu	37	5	118500911	118500911	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:118500911C>T	uc003ksd.2	+	21	5087	c.4906C>T	c.(4906-4908)CCT>TCT	p.P1636S	DMXL1_uc010jcl.1_Missense_Mutation_p.P1636S	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1636										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		AAAGAATGATCCTTTAGATGC	0.289													23	73					0	0	1	0	0
DMXL1	1657	broad.mit.edu	37	5	118506066	118506066	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:118506066C>T	uc003ksd.2	+	24	5761	c.5580C>T	c.(5578-5580)ACC>ACT	p.T1860T	DMXL1_uc010jcl.1_Silent_p.T1860T	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1860										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TATTTTTTACCACTGCCAGTG	0.368													11	41					0	0	1	0	0
FAM170A	340069	broad.mit.edu	37	5	118969872	118969873	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:118969872_118969873GG>AA	uc003ksm.2	+	3	639_640	c.429_430GG>AA	c.(427-432)TGGGAG>TGAAAG	p.143_144WE>*K	FAM170A_uc003ksl.2_Nonsense_Mutation_p.143_144WE>*K|FAM170A_uc003ksn.2_Nonsense_Mutation_p.143_144WE>*K|FAM170A_uc003kso.2_Nonsense_Mutation_p.96_97WE>*K	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	143_144						intracellular	zinc ion binding			skin(1)	1						CTGTCTCCTGGGAGACAGAGGA	0.465													36	67					0	0	1	0	0
FAM170A	340069	broad.mit.edu	37	5	118969929	118969929	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:118969929C>T	uc003ksm.2	+	3	696	c.486C>T	c.(484-486)ACC>ACT	p.T162T	FAM170A_uc003ksl.2_Silent_p.T162T|FAM170A_uc003ksn.2_Silent_p.T162T|FAM170A_uc003kso.2_Silent_p.T115T	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	162						intracellular	zinc ion binding			skin(1)	1						AAGAAGTGACCCTTTCTGAGG	0.517													34	98					0	0	1	0	0
PRR16	51334	broad.mit.edu	37	5	120022371	120022371	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:120022371G>A	uc003ksq.2	+	2	1045	c.882G>A	c.(880-882)ACG>ACA	p.T294T	PRR16_uc003ksp.2_Silent_p.T271T|PRR16_uc003ksr.2_Silent_p.T224T	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	294										pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		CACAGAAGACGATCTTGAGGA	0.383													19	40					0	0	1	0	0
FTMT	94033	broad.mit.edu	37	5	121187759	121187759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121187759C>T	uc003kss.2	+	1	110	c.101C>T	c.(100-102)CCG>CTG	p.P34L		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	34					cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CGTTGGGCCCCGGGGCGCCCC	0.766													11	16					0	0	1	0	0
FTMT	94033	broad.mit.edu	37	5	121188021	121188021	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121188021G>A	uc003kss.2	+	1	372	c.363G>A	c.(361-363)GAG>GAA	p.E121E		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	121	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		AGTCCCGGGAGGAGACCGAGC	0.572													18	57					0	0	1	0	0
FTMT	94033	broad.mit.edu	37	5	121188184	121188184	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121188184G>A	uc003kss.2	+	1	535	c.526G>A	c.(526-528)GAA>AAA	p.E176K		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	176	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		GTCGTTGCTGGAATTGCACGC	0.507													19	151					0	0	1	0	0
ZNF474	133923	broad.mit.edu	37	5	121488406	121488406	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121488406C>T	uc003ksv.2	+	2	1097	c.721C>T	c.(721-723)CCC>TCC	p.P241S		NM_207317	NP_997200	Q6S9Z5	ZN474_HUMAN	zinc finger protein 474	241						intracellular	zinc ion binding				0		all_cancers(142;0.229)|Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000197)|Epithelial(69;0.00029)|all cancers(49;0.00415)		TATTCATGAGCCCAAATGCCT	0.527													30	107					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759246	121759246	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121759246G>A	uc003ksw.1	+	4	1020	c.814G>A	c.(814-816)GAG>AAG	p.E272K	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.E272K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E319K|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.E272K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	272					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TCGAAAAGTTGAGAAGACAAC	0.488													15	40					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759380	121759380	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121759380G>A	uc003ksw.1	+	4	1154	c.948G>A	c.(946-948)CTG>CTA	p.L316L	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Silent_p.L316L|SNCAIP_uc003ksx.1_Silent_p.L363L|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Silent_p.L316L	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	316					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		GTGAGTATCTGAAAAAAGTGA	0.443													13	96					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759414	121759414	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121759414G>A	uc003ksw.1	+	4	1188	c.982G>A	c.(982-984)GAA>AAA	p.E328K	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.E328K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E375K|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.E328K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	328					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CATTGTTAAAGAAGGACAGAT	0.408													20	71					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121767694	121767694	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121767694G>A	uc003ksw.1	+	6	1419	c.1213G>A	c.(1213-1215)GTG>ATG	p.V405M	SNCAIP_uc011cwl.1_Translation_Start_Site|SNCAIP_uc010jct.2_Missense_Mutation_p.V405M|SNCAIP_uc003ksx.1_Missense_Mutation_p.V452M|SNCAIP_uc003ksy.1_Missense_Mutation_p.V39M|SNCAIP_uc003ksz.1_Missense_Mutation_p.V39M|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Missense_Mutation_p.V39M|SNCAIP_uc003kta.1_Missense_Mutation_p.V37M|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.V99M|SNCAIP_uc010jcx.1_Missense_Mutation_p.V345M	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	405	ANK 2.				cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		ACGCTGGATGGTGAGCGAAAC	0.403													8	41					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121785550	121785550	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121785550G>A	uc003ksw.1	+	9	1809	c.1603G>A	c.(1603-1605)GAA>AAA	p.E535K	SNCAIP_uc011cwl.1_Missense_Mutation_p.E93K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E582K|SNCAIP_uc003ksy.1_Missense_Mutation_p.E169K|SNCAIP_uc003ksz.1_Missense_Mutation_p.E169K|SNCAIP_uc010jcu.2_Missense_Mutation_p.E131K|SNCAIP_uc011cwm.1_Missense_Mutation_p.E169K|SNCAIP_uc003kta.1_Missense_Mutation_p.E167K|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.E229K|SNCAIP_uc010jcx.1_Missense_Mutation_p.E475K|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.E51K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	535	Potential.				cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		ACAAACAGTAGAACGTGTCAC	0.408													44	148					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786416	121786416	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:121786416G>A	uc003ksw.1	+	10	2080	c.1874G>A	c.(1873-1875)GGA>GAA	p.G625E	SNCAIP_uc011cwl.1_Missense_Mutation_p.G183E|SNCAIP_uc003ksx.1_Missense_Mutation_p.G672E|SNCAIP_uc003ksy.1_Missense_Mutation_p.G259E|SNCAIP_uc003ksz.1_Missense_Mutation_p.G259E|SNCAIP_uc010jcu.2_Missense_Mutation_p.G221E|SNCAIP_uc011cwm.1_Missense_Mutation_p.G259E|SNCAIP_uc003kta.1_Missense_Mutation_p.G257E|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.G319E|SNCAIP_uc010jcx.1_Missense_Mutation_p.G565E|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.G141E	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	625	ANK 5.				cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CAGTTATTGGGAAAGGAAATC	0.458													23	59					0	0	1	0	0
SNX24	28966	broad.mit.edu	37	5	122343382	122343382	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:122343382C>T	uc011cwo.1	+	7	617	c.448C>T	c.(448-450)CCA>TCA	p.P150S	SNX24_uc010jcy.2_3'UTR	NM_014035	NP_054754	Q9Y343	SNX24_HUMAN	SBBI31 protein	150					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding				0		Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	OV - Ovarian serous cystadenocarcinoma(64;0.000654)|Epithelial(69;0.0016)|all cancers(49;0.0139)		ttCAGATTTTCCAAATGTGGT	0.318													39	79					0	0	1	0	0
ZNF608	57507	broad.mit.edu	37	5	123984630	123984630	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:123984630G>A	uc003ktq.1	-	4	1570	c.1447C>T	c.(1447-1449)CCA>TCA	p.P483S	ZNF608_uc003ktr.1_Intron|ZNF608_uc003kts.1_Missense_Mutation_p.P483S|ZNF608_uc003ktt.1_Missense_Mutation_p.P483S	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	483						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		GCACAATTTGGGGGTGTCCTT	0.562													29	95					0	0	1	0	0
ALDH7A1	501	broad.mit.edu	37	5	125919701	125919701	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:125919701G>A	uc003ktx.2	-	4	508	c.316C>T	c.(316-318)CCT>TCT	p.P106S	ALDH7A1_uc003kty.2_RNA|ALDH7A1_uc011cxa.1_Missense_Mutation_p.P133S|ALDH7A1_uc003ktz.2_Missense_Mutation_p.P133S	NM_001182	NP_001173	P49419	AL7A1_HUMAN	aldehyde dehydrogenase 7 family, member A1	106					cellular aldehyde metabolic process|lysine catabolic process|sensory perception of sound	cytosol|mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity|betaine-aldehyde dehydrogenase activity|L-aminoadipate-semialdehyde dehydrogenase activity			kidney(2)|ovary(1)	3		all_cancers(142;0.24)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0417)|OV - Ovarian serous cystadenocarcinoma(64;0.068)|all cancers(49;0.109)	NADH(DB00157)|Pyridoxine(DB00165)	TTTGGAGCAGGAATCTAAGAA	0.348													29	50					0	0	1	0	0
C5orf48	389320	broad.mit.edu	37	5	125971753	125971753	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:125971753C>T	uc003kub.1	+	3	238	c.225C>T	c.(223-225)GGC>GGT	p.G75G		NM_207408	NP_997291	Q6ZNM6	CE048_HUMAN	hypothetical protein LOC389320	75										ovary(1)	1						TCCATACTGGCCCTTTAGAAG	0.383													30	178					0	0	1	0	0
MEGF10	84466	broad.mit.edu	37	5	126676290	126676290	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:126676290C>A	uc003kuh.3	+	5	649	c.287C>A	c.(286-288)CCT>CAT	p.P96H	MEGF10_uc010jdc.1_Missense_Mutation_p.P96H|MEGF10_uc010jdd.1_Missense_Mutation_p.P96H|MEGF10_uc003kui.3_Missense_Mutation_p.P96H	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	96	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EMI.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CAGTGTTGTCCTGGATTTTAT	0.428													36	73					1.57019e-19	1.57855e-19	1	1	0
MEGF10	84466	broad.mit.edu	37	5	126705672	126705672	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:126705672G>A	uc003kuh.3	+	6	752	c.390G>A	c.(388-390)TGG>TGA	p.W130*	MEGF10_uc010jdc.1_Nonsense_Mutation_p.W130*|MEGF10_uc010jdd.1_Nonsense_Mutation_p.W130*|MEGF10_uc003kui.3_Nonsense_Mutation_p.W130*	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	130	Extracellular (Potential).|EGF-like 1.|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		AGCCTGGCTGGGGAGGGACCA	0.507													9	61					0	0	1	0	0
MEGF10	84466	broad.mit.edu	37	5	126732423	126732423	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:126732423C>T	uc003kuh.3	+	7	974	c.612C>T	c.(610-612)GAC>GAT	p.D204D	MEGF10_uc010jdc.1_Silent_p.D204D|MEGF10_uc010jdd.1_Silent_p.D204D|MEGF10_uc003kui.3_Silent_p.D204D	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	204	Extracellular (Potential).|EGF-like 3.|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CCACCTGCGACCACGTCACGG	0.637													18	78					0	0	1	0	0
MEGF10	84466	broad.mit.edu	37	5	126746129	126746129	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:126746129G>A	uc003kuh.3	+	10	1328	c.966G>A	c.(964-966)GAG>GAA	p.E322E	MEGF10_uc010jdc.1_Silent_p.E322E|MEGF10_uc010jdd.1_Silent_p.E322E|MEGF10_uc003kui.3_Silent_p.E322E	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	322	Extracellular (Potential).|EGF-like 6.|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		TCTGTGCTGAGACCTGCCAGT	0.562													17	42					0	0	1	0	0
MEGF10	84466	broad.mit.edu	37	5	126771152	126771152	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:126771152C>T	uc003kuh.3	+	17	2437	c.2075C>T	c.(2074-2076)CCC>CTC	p.P692L	MEGF10_uc003kui.3_Missense_Mutation_p.P692L	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	692	Extracellular (Potential).|EGF-like 12.|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CAGTGTTACCCCGGTTGGATT	0.418													8	52					0	0	1	0	0
MEGF10	84466	broad.mit.edu	37	5	126784913	126784913	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:126784913C>T	uc003kuh.3	+	23	3341	c.2979C>T	c.(2977-2979)CTC>CTT	p.L993L	MEGF10_uc003kui.3_Silent_p.L993L	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	993	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		TCAACGAGCTCGGTGAGTTCT	0.532													34	68					0	0	1	0	0
SLC12A2	6558	broad.mit.edu	37	5	127474324	127474324	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127474324C>T	uc003kus.2	+	8	1608	c.1444C>T	c.(1444-1446)CGA>TGA	p.R482*	SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_Nonsense_Mutation_p.R482*	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	482	Extracellular (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	GCCCGATTTTCGAGAGGAAGA	0.373													21	129					0	0	1	0	0
SLC12A2	6558	broad.mit.edu	37	5	127484521	127484521	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127484521C>T	uc003kus.2	+	12	2121	c.1957C>T	c.(1957-1959)CGT>TGT	p.R653C	SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_Missense_Mutation_p.R653C	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	653	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	TGAACCTCTTCGTGGCTACAT	0.323													53	139					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127611766	127611766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127611766C>T	uc003kuu.2	-	59	7997	c.7558G>A	c.(7558-7560)GGG>AGG	p.G2520R		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2520	EGF-like 42; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AGGACATACCCCCTCGGACAT	0.433													31	148					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127613669	127613669	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127613669G>A	uc003kuu.2	-	58	7813	c.7374C>T	c.(7372-7374)AAC>AAT	p.N2458N		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2458	EGF-like 41; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TGGTGCAGAGGTTTGGCATTA	0.413													21	64					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127622432	127622432	+	Silent	SNP	C	T	T	rs28763928		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127622432C>T	uc003kuu.2	-	55	7429	c.6990G>A	c.(6988-6990)AGG>AGA	p.R2330R		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2330	EGF-like 39; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CTCCATCGGGCCTTCGGGCCA	0.512													13	65					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127623022	127623022	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127623022C>T	uc003kuu.2	-	54	7297	c.6858G>A	c.(6856-6858)AGG>AGA	p.R2286R		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2286	EGF-like 38; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TTTGATCTTCCCTGAGGGCAT	0.453													42	132					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127638767	127638767	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127638767C>T	uc003kuu.2	-	46	6254	c.5815G>A	c.(5815-5817)GAG>AAG	p.E1939K		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1939	EGF-like 32; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GGATGCCGCTCGCACTCATCA	0.348													27	96					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127648455	127648455	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127648455C>T	uc003kuu.2	-	37	5189	c.4750G>A	c.(4750-4752)GGA>AGA	p.G1584R		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1584	TB 6.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CCTCGAGGTCCAAACTTCAGG	0.537													30	326					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127668645	127668645	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127668645C>T	uc003kuu.2	-	32	4620	c.4181G>A	c.(4180-4182)AGC>AAC	p.S1394N	FBN2_uc003kuv.2_Missense_Mutation_p.S1361N	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1394	EGF-like 22; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TTCTCTGCAGCTACACTTGAA	0.398													50	192					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127671201	127671201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127671201C>T	uc003kuu.2	-	29	4232	c.3793G>A	c.(3793-3795)GAA>AAA	p.E1265K	FBN2_uc003kuv.2_Missense_Mutation_p.E1232K	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1265	EGF-like 19; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CAGCTGCATTCGTAGCTTCCC	0.433													70	165					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127685093	127685093	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127685093G>A	uc003kuu.2	-	23	3374	c.2935C>T	c.(2935-2937)CAT>TAT	p.H979Y	FBN2_uc003kuv.2_Missense_Mutation_p.H946Y	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	979	EGF-like 14; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CACTCGCAATGAAAAGATCCC	0.478													22	37					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127686617	127686617	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:127686617C>T	uc003kuu.2	-	21	3194	c.2755G>A	c.(2755-2757)GAA>AAA	p.E919K	FBN2_uc003kuv.2_Missense_Mutation_p.E886K	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	919	TB 4.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GCACAGCATTCAGATTTCAGA	0.552													28	80					0	0	1	0	0
SLC27A6	28965	broad.mit.edu	37	5	128324336	128324337	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:128324336_128324337GG>AA	uc003kuy.2	+	4	1125_1126	c.729_730GG>AA	c.(727-732)AGGGGT>AGAAGT	p.G244S	SLC27A6_uc003kuz.2_Missense_Mutation_p.G244S	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	244					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AGGTTTTAAGGGGTTCTGCTGT	0.366													53	126					0	0	1	0	0
SLC27A6	28965	broad.mit.edu	37	5	128362828	128362828	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:128362828G>A	uc003kuy.2	+	8	1654	c.1258G>A	c.(1258-1260)GAA>AAA	p.E420K	SLC27A6_uc003kuz.2_Missense_Mutation_p.E420K	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	420					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		TCTTGCAGGAGAACCTGGACT	0.383													37	84					0	0	1	0	0
SLC27A6	28965	broad.mit.edu	37	5	128362842	128362842	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:128362842C>T	uc003kuy.2	+	8	1668	c.1272C>T	c.(1270-1272)CTC>CTT	p.L424L	SLC27A6_uc003kuz.2_Silent_p.L424L	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	424					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		CTGGACTTCTCATTTCTCGAG	0.378													40	92					0	0	1	0	0
SLC27A6	28965	broad.mit.edu	37	5	128365332	128365332	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:128365332G>A	uc003kuy.2	+	10	2011	c.1615G>A	c.(1615-1617)GAA>AAA	p.E539K	SLC27A6_uc003kuz.2_Missense_Mutation_p.E539K	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	539					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		TTTAGATTTGGAAAAAGTTTA	0.303													22	43					0	0	1	0	0
ISOC1	51015	broad.mit.edu	37	5	128440889	128440889	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:128440889C>T	uc003kva.2	+	3	459	c.441C>T	c.(439-441)GCC>GCT	p.A147A		NM_016048	NP_057132	Q96CN7	ISOC1_HUMAN	isochorismatase domain containing 1	147						peroxisome	catalytic activity				0		all_cancers(142;0.0813)|Prostate(80;0.0865)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.138)|OV - Ovarian serous cystadenocarcinoma(64;0.164)		TGCAAGGGGCCCGGATTTTAG	0.343													15	73					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128797335	128797335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:128797335G>A	uc003kvb.1	+	2	614	c.614G>A	c.(613-615)GGG>GAG	p.G205E	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	205	Pro-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GGCCCCACGGGGGCAGCATCC	0.701													12	29					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128957988	128957988	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:128957988G>A	uc003kvb.1	+	10	1699	c.1699G>A	c.(1699-1701)GAA>AAA	p.E567K	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	567	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		CACTGCTGATGAACAATGCCA	0.463													20	60					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128990073	128990073	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:128990073G>A	uc003kvb.1	+	14	2233	c.2233G>A	c.(2233-2235)GGA>AGA	p.G745R	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	745	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		AGTGATGGATGGAACTTCTTG	0.353													13	95					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129030435	129030435	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:129030435C>T	uc003kvb.1	+	19	2823	c.2823C>T	c.(2821-2823)TCC>TCT	p.S941S	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	941	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		CAACAGTGTCCTGCACAAAAA	0.348													22	72					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129039953	129039953	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:129039953G>A	uc003kvb.1	+	21	3163	c.3163G>A	c.(3163-3165)GGC>AGC	p.G1055S	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1055	TSP type-1 4.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GTGTGGCAAAGGCATACGTCA	0.423													53	128					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129070689	129070689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:129070689G>A	uc003kvb.1	+	22	3359	c.3359G>A	c.(3358-3360)GGA>GAA	p.G1120E	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1120	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		AAGATCACAGGAAGACATGGA	0.388													25	77					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129070703	129070703	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:129070703G>A	uc003kvb.1	+	22	3373	c.3373G>A	c.(3373-3375)GAA>AAA	p.E1125K	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1125	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		ACATGGAAATGAATGTTTTTC	0.418													27	76					0	0	1	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130797667	130797667	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:130797667G>A	uc003kvn.1	-	19	2801	c.2595C>T	c.(2593-2595)GCC>GCT	p.A865A	RAPGEF6_uc003kvp.1_Silent_p.A915A|RAPGEF6_uc003kvo.1_Silent_p.A870A|RAPGEF6_uc010jdi.1_Silent_p.A865A|RAPGEF6_uc010jdj.1_Silent_p.A865A|RAPGEF6_uc003kvq.2_Silent_p.A582A|RAPGEF6_uc003kvr.2_Silent_p.A865A|RAPGEF6_uc011cxe.1_RNA	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	865	Ras-GEF.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		ACAGCTGGGTGGCCACCTCAA	0.403													30	76					0	0	1	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130883776	130883776	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:130883776G>A	uc003kvn.1	-	6	665	c.459C>T	c.(457-459)ACC>ACT	p.T153T	RAPGEF6_uc003kvp.1_Silent_p.T203T|RAPGEF6_uc003kvo.1_Silent_p.T153T|RAPGEF6_uc010jdi.1_Silent_p.T153T|RAPGEF6_uc010jdj.1_Silent_p.T153T|RAPGEF6_uc003kvr.2_Silent_p.T153T|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Silent_p.T153T	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	153					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		CATCAGTAATGGTTTGGCGCT	0.333													33	107					0	0	1	0	0
ACSL6	23305	broad.mit.edu	37	5	131308971	131308971	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131308971C>T	uc010jdo.1	-	12	1199	c.1116G>A	c.(1114-1116)CGG>CGA	p.R372R	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Silent_p.R397R|ACSL6_uc003kvy.1_Silent_p.R397R|ACSL6_uc003kwb.2_Silent_p.R362R|ACSL6_uc003kvz.1_Silent_p.R297R|ACSL6_uc003kwa.1_Silent_p.R383R|ACSL6_uc003kvw.1_Silent_p.R18R|ACSL6_uc010jdn.1_Silent_p.R387R|ACSL6_uc010jdp.1_RNA	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	372	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGTCGTACATCCGGTTCAGCA	0.562													22	68					0	0	1	0	0
IL3	3562	broad.mit.edu	37	5	131398405	131398405	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131398405G>A	uc003kwe.1	+	5	433	c.380G>A	c.(379-381)CGG>CAG	p.R127Q		NM_000588	NP_000579	P08700	IL3_HUMAN	interleukin 3 precursor	127					cell-cell signaling|immune response|nervous system development|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of survival gene product expression|positive regulation of tyrosine phosphorylation of Stat5 protein	extracellular space	cytokine activity|growth factor activity|interleukin-3 receptor binding			ovary(2)|central_nervous_system(1)	3		all_cancers(142;7.42e-12)|Lung NSC(810;4.25e-07)|all_lung(232;1.93e-06)|Prostate(281;0.00741)|Breast(839;0.0544)|Lung SC(612;0.122)|Ovarian(839;0.223)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	GBM - Glioblastoma multiforme(465;0.0161)|Lung(113;0.105)	Amlexanox(DB01025)	AATGAATTCCGGAGGAAACTG	0.363											OREG0016762	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	117					0	0	1	0	0
CSF2	1437	broad.mit.edu	37	5	131411475	131411475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131411475G>A	uc003kwf.2	+	4	397	c.365G>A	c.(364-366)AGT>AAT	p.S122N		NM_000758	NP_000749	P04141	CSF2_HUMAN	colony stimulating factor 2 precursor	122					immune response|negative regulation of cytolysis|positive regulation of DNA replication|positive regulation of interleukin-23 production|positive regulation of macrophage derived foam cell differentiation|positive regulation of podosome assembly|positive regulation of tyrosine phosphorylation of Stat5 protein	extracellular space	cytokine activity|granulocyte macrophage colony-stimulating factor receptor binding|growth factor activity				0		all_cancers(142;4.28e-07)|all_lung(232;2.81e-05)|Lung NSC(810;0.000693)|Lung SC(612;0.122)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Sargramostim(DB00020)	ACCTTTGAAAGTTTCAAAGAG	0.483													21	196					0	0	1	0	0
SLC22A4	6583	broad.mit.edu	37	5	131670542	131670542	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131670542G>A	uc003kwq.2	+	7	1343	c.1178G>A	c.(1177-1179)CGA>CAA	p.R393Q	uc003kwr.3_RNA	NM_003059	NP_003050	Q9H015	S22A4_HUMAN	solute carrier family 22 member 4	393	Cytoplasmic (Potential).				body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity				0		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	CTGCTATTGCGAACCCTGCCC	0.473													60	223					0	0	1	0	0
SLC22A5	6584	broad.mit.edu	37	5	131729429	131729429	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131729429C>T	uc003kww.3	+	9	1776	c.1512C>T	c.(1510-1512)ATC>ATT	p.I504I	SLC22A5_uc003kwx.3_Silent_p.I528I|SLC22A5_uc010jdr.1_Silent_p.I124I	NM_003060	NP_003051	O76082	S22A5_HUMAN	solute carrier family 22 member 5	504	Helical; Name=12; (Potential).				positive regulation of intestinal epithelial structure maintenance|quorum sensing involved in interaction with host|sodium ion transport|sodium-dependent organic cation transport	apical plasma membrane|brush border membrane|integral to membrane	ATP binding|carnitine transporter activity|PDZ domain binding|symporter activity				0		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	TGACAGCCATCCTCACCTTGT	0.552													86	183					0	0	1	0	0
IL5	3567	broad.mit.edu	37	5	131877530	131877530	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131877530C>T	uc003kxe.1	-	4	422	c.378G>A	c.(376-378)ATG>ATA	p.M126I		NM_000879	NP_000870	P05113	IL5_HUMAN	interleukin 5 precursor	126					immune response|inflammatory response|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of podosome assembly	extracellular space	cytokine activity|growth factor activity|interleukin-5 receptor binding				0		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Pranlukast(DB01411)	ACTCGGTGTTCATTACACCAA	0.393													20	76					0	0	1	0	0
IL5	3567	broad.mit.edu	37	5	131878811	131878811	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131878811C>T	uc003kxe.1	-	2	196	c.152G>A	c.(151-153)AGG>AAG	p.R51K		NM_000879	NP_000870	P05113	IL5_HUMAN	interleukin 5 precursor	51					immune response|inflammatory response|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of podosome assembly	extracellular space	cytokine activity|growth factor activity|interleukin-5 receptor binding				0		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Pranlukast(DB01411)	AACAGGAATCCTCAGAGTCTG	0.328													11	46					0	0	1	0	0
RAD50	10111	broad.mit.edu	37	5	131923622	131923622	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131923622C>T	uc003kxi.2	+	7	1279	c.892C>T	c.(892-894)CAA>TAA	p.Q298*	RAD50_uc003kxh.2_Nonsense_Mutation_p.Q159*	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	298	Potential.				DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACAGGTTTTTCAAGGGACTGA	0.323								Homologous_recombination					25	55					0	0	1	0	0
RAD50	10111	broad.mit.edu	37	5	131924381	131924381	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131924381C>T	uc003kxi.2	+	8	1441	c.1054C>T	c.(1054-1056)CGT>TGT	p.R352C	RAD50_uc003kxh.2_Missense_Mutation_p.R213C	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	352	Potential.				DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTTAAAAGGTCGTCTACAGCT	0.284								Homologous_recombination					33	25					0	0	1	0	0
IL13	3596	broad.mit.edu	37	5	131995155	131995155	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131995155G>A	uc003kxj.1	+	2	234	c.220G>A	c.(220-222)GCT>ACT	p.A74T		NM_002188	NP_002179	P35225	IL13_HUMAN	interleukin 13 precursor	74					cellular component movement|immune response|inflammatory response|signal transduction	extracellular space|soluble fraction	cytokine activity			ovary(1)|skin(1)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CAACCTGACAGCTGGCATGGT	0.602													3	17					0	0	1	0	0
IL13	3596	broad.mit.edu	37	5	131995954	131995954	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:131995954C>T	uc003kxj.1	+	4	435	c.421C>T	c.(421-423)CGC>TGC	p.R141C		NM_002188	NP_002179	P35225	IL13_HUMAN	interleukin 13 precursor	141					cellular component movement|immune response|inflammatory response|signal transduction	extracellular space|soluble fraction	cytokine activity			ovary(1)|skin(1)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GAAACTTTTTCGCGAGGGACA	0.418													18	60					0	0	1	0	0
KIF3A	11127	broad.mit.edu	37	5	132062122	132062122	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132062122G>A	uc003kxo.2	-	3	503	c.349C>T	c.(349-351)CCT>TCT	p.P117S	KIF3A_uc003kxn.2_Missense_Mutation_p.P76S|KIF3A_uc011cxf.1_Missense_Mutation_p.P117S|KIF3A_uc003kxp.2_Missense_Mutation_p.P117S	NM_007054	NP_008985	Q9Y496	KIF3A_HUMAN	kinesin family member 3A	117	Kinesin-motor.				blood coagulation|organelle organization|plus-end-directed vesicle transport along microtubule	centrosome|cytosol|kinesin II complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|protein binding			pancreas(1)	1		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTAAGTTCAGGAATAGCTCGA	0.368													36	111					0	0	1	0	0
SEPT8	23176	broad.mit.edu	37	5	132100089	132100089	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132100089G>A	uc003kxr.2	-	3	412	c.174C>T	c.(172-174)TCC>TCT	p.S58S	SEPT8_uc003kxs.1_Silent_p.S58S|SEPT8_uc003kxu.2_Silent_p.S58S|SEPT8_uc011cxi.1_Silent_p.S58S|SEPT8_uc003kxv.2_Silent_p.S58S|SEPT8_uc003kxt.2_5'UTR	NM_001098811	NP_001092281	Q92599	SEPT8_HUMAN	septin 8 isoform a	58	GTP (By similarity).				cell cycle	septin complex	GTP binding|protein binding			ovary(2)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCATCAGTGTGGATTTGCCAA	0.587													11	34					0	0	1	0	0
SHROOM1	134549	broad.mit.edu	37	5	132158506	132158506	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132158506G>A	uc003kxx.2	-	10	3346	c.2541C>T	c.(2539-2541)TTC>TTT	p.F847F	SHROOM1_uc003kxy.1_Silent_p.F842F	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	847					actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGAGAAGAGGGAAGGGCGGCT	0.607													8	17					0	0	1	0	0
SHROOM1	134549	broad.mit.edu	37	5	132161206	132161206	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132161206G>A	uc003kxx.2	-	4	1432	c.627C>T	c.(625-627)GCC>GCT	p.A209A	SHROOM1_uc003kxy.1_Silent_p.A209A	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	209	ASD1.				actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GACCCCGGCCGGCAGTTCCTG	0.771													6	5					0	0	1	0	0
GDF9	2661	broad.mit.edu	37	5	132197639	132197639	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132197639G>A	uc003kxz.1	-	2	1259	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	GDF9_uc011cxj.1_Missense_Mutation_p.S248F	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	336					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CAGATTGAAGGAAGCTGGGCC	0.483													36	91					0	0	1	0	0
GDF9	2661	broad.mit.edu	37	5	132197785	132197785	+	Silent	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132197785A>C	uc003kxz.1	-	2	1113	c.861T>G	c.(859-861)CCT>CCG	p.P287P	GDF9_uc011cxj.1_Silent_p.P199P	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	287					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GACCCTGGGAAGGCCTCCTTT	0.512													21	49					0	0	1	0	0
GDF9	2661	broad.mit.edu	37	5	132199880	132199880	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132199880G>A	uc003kxz.1	-	1	598	c.346C>T	c.(346-348)CTC>TTC	p.L116F	GDF9_uc011cxj.1_Missense_Mutation_p.L28F|UQCRQ_uc003kya.1_5'Flank	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	116					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGGGTGAAGAGCCGAACAGTG	0.483													28	107					0	0	1	0	0
AFF4	27125	broad.mit.edu	37	5	132232403	132232403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132232403G>A	uc003kyd.2	-	11	2327	c.1919C>T	c.(1918-1920)TCA>TTA	p.S640L	AFF4_uc011cxk.1_Missense_Mutation_p.S318L|AFF4_uc003kye.1_Missense_Mutation_p.S640L	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	640					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GATTTCCCTTGATTTCTGGGA	0.423													11	64					0	0	1	0	0
HSPA4	3308	broad.mit.edu	37	5	132400719	132400719	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132400719C>T	uc003kyj.2	+	2	436	c.155C>T	c.(154-156)GCT>GTT	p.A52V		NM_002154	NP_002145	P34932	HSP74_HUMAN	heat shock 70kDa protein 4	52					cellular chaperone-mediated protein complex assembly|protein import into mitochondrial outer membrane|response to unfolded protein	cytoplasm|nucleus	ATP binding			lung(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGAGCAGCAGCTAAAAGCCAG	0.254													12	108					0	0	1	0	0
FSTL4	23105	broad.mit.edu	37	5	132534831	132534831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132534831C>T	uc003kyn.1	-	16	2703	c.2485G>A	c.(2485-2487)GGT>AGT	p.G829S	FSTL4_uc003kym.1_Missense_Mutation_p.G478S	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	829						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCCTTTATACCTGACACCTCA	0.592													11	43					0	0	1	0	0
FSTL4	23105	broad.mit.edu	37	5	132560846	132560846	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132560846C>T	uc003kyn.1	-	10	1526	c.1308G>A	c.(1306-1308)AAG>AAA	p.K436K	FSTL4_uc003kym.1_Missense_Mutation_p.R43K	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	436						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACTTACGGGTCTTTCTAGCTG	0.527													30	64					0	0	1	0	0
FSTL4	23105	broad.mit.edu	37	5	132736524	132736524	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:132736524C>T	uc003kyn.1	-	4	533	c.315G>A	c.(313-315)GGG>GGA	p.G105G		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	105	Kazal-like.					extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CATAAAACCTCCCATCAGAGC	0.587													10	72					0	0	1	0	0
SEC24A	10802	broad.mit.edu	37	5	134041097	134041097	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:134041097C>T	uc003kzs.2	+	17	2809	c.2521C>T	c.(2521-2523)CAA>TAA	p.Q841*	SEC24A_uc011cxu.1_Nonsense_Mutation_p.Q605*	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	841					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AGCTGATGTTCAAGCAATTTC	0.353													17	134					0	0	1	0	0
TXNDC15	79770	broad.mit.edu	37	5	134229308	134229308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:134229308C>T	uc003lac.1	+	3	1376	c.718C>T	c.(718-720)CTT>TTT	p.L240F	TXNDC15_uc010jdy.1_RNA|TXNDC15_uc011cxv.1_RNA	NM_024715	NP_078991	Q96J42	TXD15_HUMAN	disulfide isomerase precursor	240	Extracellular (Potential).|Thioredoxin.				cell redox homeostasis	integral to membrane				ovary(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ATTTCCAGCTCTTCACTTTTT	0.522													48	141					0	0	1	0	0
CATSPER3	347732	broad.mit.edu	37	5	134343727	134343727	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:134343727C>T	uc003lag.2	+	4	641	c.573C>T	c.(571-573)TTC>TTT	p.F191F		NM_178019	NP_821138	Q86XQ3	CTSR3_HUMAN	cation channel, sperm associated 3	191	Helical; Name=Segment S5; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGTACATCTTCGCTATCTTGG	0.557													28	86					0	0	1	0	0
PITX1	5307	broad.mit.edu	37	5	134364788	134364788	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:134364788G>A	uc010jea.2	-	3	1019	c.626C>T	c.(625-627)TCG>TTG	p.S209L	PITX1_uc011cxy.1_Missense_Mutation_p.S209L	NM_002653	NP_002644	P78337	PITX1_HUMAN	paired-like homeodomain transcription factor 1	209	Interacts with PIT-1 (By similarity).					nucleolus	sequence-specific DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	READ - Rectum adenocarcinoma(2;0.0607)		GGACTGCGACGACAGCGGGCT	0.652													16	80					0	0	1	0	0
C5orf20	140947	broad.mit.edu	37	5	134782265	134782265	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:134782265C>T	uc003lav.2	-	1	774	c.534G>A	c.(532-534)CTG>CTA	p.L178L		NM_130848	NP_570900	Q8TF63	DCNP1_HUMAN	dendritic cell nuclear protein 1	178	Ser-rich.					nucleus					0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CTGATGATTTCAGTGATTTTC	0.488													27	80					0	0	1	0	0
C5orf20	140947	broad.mit.edu	37	5	134782660	134782660	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:134782660C>T	uc003lav.2	-	1	379	c.139G>A	c.(139-141)GAG>AAG	p.E47K		NM_130848	NP_570900	Q8TF63	DCNP1_HUMAN	dendritic cell nuclear protein 1	47						nucleus					0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCAAAGTTCTCTGGTGGAGCT	0.612													4	19					0	0	1	0	0
TIFAB	497189	broad.mit.edu	37	5	134785187	134785187	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:134785187C>T	uc003law.3	-	2	644	c.443G>A	c.(442-444)TGG>TAG	p.W148*	C5orf20_uc003lav.2_5'Flank	NM_001099221	NP_001092691	Q6ZNK6	TIFAB_HUMAN	TIFA-related protein TIFAB	148											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GATGCCTTCCCATTCGTCAGT	0.582													32	75					0	0	1	0	0
TIFAB	497189	broad.mit.edu	37	5	134785468	134785469	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:134785468_134785469GG>AA	uc003law.3	-	2	362_363	c.161_162CC>TT	c.(160-162)TCC>TTT	p.S54F	C5orf20_uc003lav.2_5'Flank	NM_001099221	NP_001092691	Q6ZNK6	TIFAB_HUMAN	TIFA-related protein TIFAB	54	FHA.										0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGTGACGGCGGGAGAGGCGAGG	0.658													6	64					0	0	1	0	0
NEUROG1	4762	broad.mit.edu	37	5	134870797	134870797	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:134870797G>A	uc003lax.2	-	1	843	c.584C>T	c.(583-585)CCG>CTG	p.P195L		NM_006161	NP_006152	Q92886	NGN1_HUMAN	neurogenin 1	195					positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter	nucleus	chromatin binding|E-box binding|sequence-specific DNA binding transcription factor activity|transcription factor binding transcription factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GTCAGAGAGCGGGGAGGCGGC	0.716													6	40					0	0	1	0	0
FBXL21	26223	broad.mit.edu	37	5	135273183	135273183	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135273183C>T	uc010jec.1	+	3	457	c.436C>T	c.(436-438)CAG>TAG	p.Q146*	FBXL21_uc003lbc.2_RNA	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21	146					rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTGTTCCATCCAGACCTTGGG	0.413													21	73					0	0	1	0	0
FBXL21	26223	broad.mit.edu	37	5	135277309	135277309	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135277309C>T	uc010jec.1	+	5	1275	c.1254C>T	c.(1252-1254)GTC>GTT	p.V418V	FBXL21_uc003lbc.2_Intron	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21	418					rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ACACTGAAGTCTCCAAATACC	0.403													10	35					0	0	1	0	0
TGFBI	7045	broad.mit.edu	37	5	135382142	135382142	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135382142C>T	uc003lbf.3	+	4	578	c.417C>T	c.(415-417)ACC>ACT	p.T139T	TGFBI_uc003lbg.3_5'UTR|TGFBI_uc003lbh.3_5'UTR|TGFBI_uc011cyb.1_5'UTR|TGFBI_uc010jed.2_5'Flank	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	139	FAS1 1.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCAGCTTCACCATCTTCGCCC	0.622													9	24					0	0	1	0	0
TGFBI	7045	broad.mit.edu	37	5	135389715	135389715	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135389715C>T	uc003lbf.3	+	9	1371	c.1210C>T	c.(1210-1212)CTC>TTC	p.L404F	TGFBI_uc003lbg.3_Missense_Mutation_p.L137F|TGFBI_uc003lbh.3_Missense_Mutation_p.L230F|TGFBI_uc011cyb.1_Missense_Mutation_p.L230F|TGFBI_uc010jed.2_Missense_Mutation_p.L137F	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	404	FAS1 3.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CGGCAATCATCTCTCTGGAAG	0.507													31	126					0	0	1	0	0
SMAD5	4090	broad.mit.edu	37	5	135513139	135513139	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135513139C>T	uc003lbj.1	+	11	1813	c.1369C>T	c.(1369-1371)CCT>TCT	p.P457S	SMAD5_uc003lbk.1_Missense_Mutation_p.P457S|SMAD5_uc003lbl.1_Missense_Mutation_p.P457S	NM_001001419	NP_001001419	Q99717	SMAD5_HUMAN	SMAD family member 5	457	MH2.				BMP signaling pathway|embryonic pattern specification|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytosol|integral to membrane|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|ubiquitin protein ligase binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GATGGGCTCCCCTCTGAACCC	0.398													7	22					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135561028	135561028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135561028C>T	uc003lbn.1	-	9	2277	c.2274G>A	c.(2272-2274)CAG>CAA	p.Q758Q	TRPC7_uc010jef.1_Silent_p.Q695Q|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.Q689Q|TRPC7_uc010jei.1_Silent_p.Q634Q|TRPC7_uc010jej.1_Silent_p.Q310Q	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	759	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCATGCCAGCCTGGTAGCGAG	0.453													10	18					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135561040	135561040	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135561040C>T	uc003lbn.1	-	9	2265	c.2262G>A	c.(2260-2262)AAG>AAA	p.K754K	TRPC7_uc010jef.1_Silent_p.K691K|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.K685K|TRPC7_uc010jei.1_Silent_p.K630K|TRPC7_uc010jej.1_Silent_p.K306K	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	755	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGTAGCGAGTCTTCTGGATAA	0.453													4	18					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135587422	135587422	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135587422C>T	uc003lbn.1	-	5	1494	c.1491G>A	c.(1489-1491)GAG>GAA	p.E497E	TRPC7_uc010jef.1_Silent_p.E434E|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.E428E|TRPC7_uc010jei.1_Silent_p.E373E|TRPC7_uc010jej.1_Silent_p.E49E	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	498	Extracellular (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ACAGCTGTGCCTCCGTGGCCT	0.582													9	23					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135692426	135692426	+	Missense_Mutation	SNP	G	A	A	rs138178870	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135692426G>A	uc003lbn.1	-	1	650	c.647C>T	c.(646-648)TCG>TTG	p.S216L	TRPC7_uc010jef.1_Missense_Mutation_p.S208L|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.S208L|TRPC7_uc010jei.1_Missense_Mutation_p.S208L|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	217	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GTTCATGCGCGAGCGCGAGTG	0.612													14	32					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135692569	135692569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135692569G>A	uc003lbn.1	-	1	507	c.504C>T	c.(502-504)ATC>ATT	p.I168I	TRPC7_uc010jef.1_Silent_p.I160I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.I160I|TRPC7_uc010jei.1_Silent_p.I160I|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	169	Cytoplasmic (Potential).|ANK 4.				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCGCCGCCAGGATGATGGGCG	0.632													65	161					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135693067	135693067	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:135693067C>T	uc003lbn.1	-	1	9	c.6G>A	c.(4-6)AGG>AGA	p.R2R	TRPC7_uc010jef.1_5'UTR|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_5'UTR|TRPC7_uc010jei.1_5'UTR|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	3	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGGTGCTGTTCCTCAACCTAT	0.527													11	29					0	0	1	0	0
SPOCK1	6695	broad.mit.edu	37	5	136602719	136602719	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:136602719G>A	uc003lbo.2	-	2	403	c.212C>T	c.(211-213)CCC>CTC	p.P71L	SPOCK1_uc003lbp.2_Missense_Mutation_p.P71L	NM_004598	NP_004589	Q08629	TICN1_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	71					cell adhesion|cell proliferation|cellular component movement|nervous system development|signal transduction	proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGGCTTGTTGGGATTCCAGTT	0.363													45	98					0	0	1	0	0
KLHL3	26249	broad.mit.edu	37	5	136969778	136969778	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:136969778C>T	uc010jek.2	-	12	1842	c.1398G>A	c.(1396-1398)GCG>GCA	p.A466A	KLHL3_uc011cyc.1_Silent_p.A201A|KLHL3_uc003lbr.3_Silent_p.A384A|KLHL3_uc011cyd.1_Intron|KLHL3_uc010jel.1_Silent_p.A201A	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3	466	Kelch 4.					cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		ATTCATTGGTCGCTGGGTTGT	0.552													23	124					0	0	1	0	0
KLHL3	26249	broad.mit.edu	37	5	136974658	136974658	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:136974658G>A	uc010jek.2	-	10	1647	c.1203C>T	c.(1201-1203)GGC>GGT	p.G401G	KLHL3_uc011cyc.1_Silent_p.G170G|KLHL3_uc003lbr.3_Silent_p.G319G|KLHL3_uc011cyd.1_Intron|KLHL3_uc010jel.1_Silent_p.G170G|KLHL3_uc010jem.1_Silent_p.G361G	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3	401	Kelch 3.					cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		TGCCATCAAAGCCTCCCACTG	0.582													8	21					0	0	1	0	0
KLHL3	26249	broad.mit.edu	37	5	137028077	137028077	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137028077G>A	uc010jek.2	-	5	867	c.423C>T	c.(421-423)GAC>GAT	p.D141D	KLHL3_uc003lbr.3_Silent_p.D59D|KLHL3_uc011cyd.1_RNA|MYOT_uc011cye.1_Intron|KLHL3_uc010jem.1_Silent_p.D101D|KLHL3_uc010jen.1_RNA|KLHL3_uc003lbs.1_Silent_p.D9D	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3	141						cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		ACTGCAGGAAGTCACAGCAGT	0.552													7	33					0	0	1	0	0
PKD2L2	27039	broad.mit.edu	37	5	137230282	137230282	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137230282C>T	uc003lby.2	+	4	564	c.508C>T	c.(508-510)CTT>TTT	p.L170F	PKD2L2_uc010jep.1_Missense_Mutation_p.L110F|PKD2L2_uc003lbw.1_Missense_Mutation_p.L170F|PKD2L2_uc003lbx.2_Missense_Mutation_p.L170F	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	170	Extracellular (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TAATTTTGGCCTTCAAATTAA	0.333													15	33					0	0	1	0	0
FAM13B	51306	broad.mit.edu	37	5	137284808	137284808	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137284808G>A	uc003lbz.2	-	17	2464	c.1930C>T	c.(1930-1932)CCA>TCA	p.P644S	FAM13B_uc003lcb.2_Missense_Mutation_p.P548S|FAM13B_uc003lca.2_Missense_Mutation_p.P644S	NM_016603	NP_057687	Q9NYF5	FA13B_HUMAN	hypothetical protein LOC51306 isoform 1	644					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						AAGCTTTTTGGAAGTGTGTTA	0.383													54	119					0	0	1	0	0
WNT8A	7478	broad.mit.edu	37	5	137423581	137423581	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137423581G>A	uc003lcd.1	+	4	333	c.328G>A	c.(328-330)GAA>AAA	p.E110K	BRD8_uc003lcc.1_Intron|WNT8A_uc011cyj.1_Missense_Mutation_p.E128K|WNT8A_uc011cyk.1_Missense_Mutation_p.E128K	NM_058244	NP_490645	Q9H1J5	WNT8A_HUMAN	wingless-type MMTV integration site family,	110					brain segmentation|canonical Wnt receptor signaling pathway involved in neural crest cell differentiation|cell migration involved in gastrulation|dorsal/ventral pattern formation|ectoderm development|endoderm development|eye development|hindbrain development|mesodermal cell fate commitment|negative regulation of Wnt receptor signaling pathway|neural crest cell fate commitment|neural plate pattern specification|notochord development|palate development|polarity specification of anterior/posterior axis|polarity specification of proximal/distal axis|positive regulation of fibroblast growth factor receptor signaling pathway|regulation of transcription involved in anterior/posterior axis specification|response to retinoic acid|somitogenesis|spinal cord anterior/posterior patterning|tail morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			ovary(1)|lung(1)|breast(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GGGTGACTTCGAAAACTGTGG	0.483													66	175					0	0	1	0	0
GFRA3	2676	broad.mit.edu	37	5	137600082	137600082	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137600082G>A	uc003lcn.2	-	2	387	c.247C>T	c.(247-249)CCT>TCT	p.P83S	GFRA3_uc003lco.2_Missense_Mutation_p.P83S	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	83					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CAGTCAGCAGGGACCGAAGGC	0.597													27	57					0	0	1	0	0
CDC25C	995	broad.mit.edu	37	5	137627780	137627780	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137627780G>A	uc003lcp.1	-	8	912	c.641C>T	c.(640-642)TCC>TTC	p.S214F	CDC25C_uc003lcq.1_Missense_Mutation_p.S141F|CDC25C_uc003lcr.1_Missense_Mutation_p.S214F|CDC25C_uc011cyp.1_Missense_Mutation_p.S231F|CDC25C_uc003lcs.1_Missense_Mutation_p.S292F	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	214					cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CATCGACGGGGAGCGATATAG	0.318													59	133					0	0	1	0	0
CDC25C	995	broad.mit.edu	37	5	137665307	137665307	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137665307G>A	uc003lcp.1	-	3	495	c.224C>T	c.(223-225)TCG>TTG	p.S75L	CDC25C_uc003lcq.1_Intron|CDC25C_uc003lcr.1_Missense_Mutation_p.S75L|CDC25C_uc011cyp.1_Missense_Mutation_p.S92L|CDC25C_uc003lcs.1_Missense_Mutation_p.S153L|CDC25C_uc010jet.1_Missense_Mutation_p.S75L|CDC25C_uc003lct.1_Missense_Mutation_p.S75L|CDC25C_uc003lcu.1_Intron	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	75					cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GCTAAGATTCGAAAGATCGAG	0.423													51	124					0	0	1	0	0
KDM3B	51780	broad.mit.edu	37	5	137727218	137727218	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137727218C>T	uc003lcy.1	+	8	2097	c.1897C>T	c.(1897-1899)CCT>TCT	p.P633S	KDM3B_uc010jew.1_Missense_Mutation_p.P289S|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	633					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						CCGAGAAGAGCCTTCTAATCC	0.493													36	194					0	0	1	0	0
KDM3B	51780	broad.mit.edu	37	5	137727469	137727469	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137727469C>T	uc003lcy.1	+	8	2348	c.2148C>T	c.(2146-2148)AGC>AGT	p.S716S	KDM3B_uc010jew.1_Silent_p.S372S|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	716	Ser-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						GGGGCCCAAGCCTCTCTGCCA	0.572													27	73					0	0	1	0	0
REEP2	51308	broad.mit.edu	37	5	137780194	137780194	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137780194C>T	uc003lcz.2	+	4	395	c.273C>T	c.(271-273)TTC>TTT	p.F91F	REEP2_uc003lda.2_Silent_p.F91F|REEP2_uc011cyt.1_Silent_p.F52F	NM_016606	NP_057690	Q9BRK0	REEP2_HUMAN	receptor accessory protein 2	91						integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			ACCGCAAGTTCGTGCACCCAA	0.587													16	59					0	0	1	0	0
EGR1	1958	broad.mit.edu	37	5	137802597	137802597	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:137802597C>T	uc003ldb.1	+	2	729	c.459C>T	c.(457-459)CCC>CCT	p.P153P	EGR1_uc011cyu.1_Intron	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	153					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GGCCCGAGCCCCTCTTCAGCT	0.637													45	131					0	0	1	0	0
SLC23A1	9963	broad.mit.edu	37	5	138707942	138707942	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:138707942C>T	uc003leh.2	-	14	1647	c.1550G>A	c.(1549-1551)GGG>GAG	p.G517E	SLC23A1_uc003leg.2_Missense_Mutation_p.G521E	NM_005847	NP_005838	Q9UHI7	S23A1_HUMAN	solute carrier family 23 (nucleobase	517					brain development|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|response to toxin|transepithelial L-ascorbic acid transport|water-soluble vitamin metabolic process	apical plasma membrane|cytoplasm|integral to plasma membrane|intracellular organelle|membrane fraction	dehydroascorbic acid transporter activity|L-ascorbate:sodium symporter activity|nucleobase transmembrane transporter activity|protein binding|sodium-dependent L-ascorbate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)		Vitamin C(DB00126)	CTCTGGGCTCCCTGGAAGAGG	0.537													19	41					0	0	1	0	0
SLC23A1	9963	broad.mit.edu	37	5	138716319	138716319	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:138716319C>T	uc003leh.2	-	5	497	c.400G>A	c.(400-402)GAG>AAG	p.E134K	SLC23A1_uc003leg.2_Missense_Mutation_p.E134K	NM_005847	NP_005838	Q9UHI7	S23A1_HUMAN	solute carrier family 23 (nucleobase	134					brain development|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|response to toxin|transepithelial L-ascorbic acid transport|water-soluble vitamin metabolic process	apical plasma membrane|cytoplasm|integral to plasma membrane|intracellular organelle|membrane fraction	dehydroascorbic acid transporter activity|L-ascorbate:sodium symporter activity|nucleobase transmembrane transporter activity|protein binding|sodium-dependent L-ascorbate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)		Vitamin C(DB00126)	CCGTAGATCTCCTCTGGGGGT	0.567													25	45					0	0	1	0	0
TMEM173	340061	broad.mit.edu	37	5	138855874	138855874	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:138855874G>A	uc003lep.2	-	8	1363	c.1112C>T	c.(1111-1113)CCC>CTC	p.P371L		NM_198282	NP_938023	Q86WV6	TM173_HUMAN	transmembrane protein 173	371	Cytoplasmic (Potential).				activation of innate immune response|apoptosis|cellular response to exogenous dsRNA|defense response to virus|innate immune response|interferon-beta production|positive regulation of defense response to virus by host|positive regulation of protein binding|positive regulation of protein import into nucleus, translocation|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane|perinuclear region of cytoplasm|plasma membrane	protein homodimerization activity|protein kinase binding|transcription factor binding			upper_aerodigestive_tract(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GAGAGGGAGGGGCTTTTCCAT	0.592													3	6					0	0	1	0	0
CXXC5	51523	broad.mit.edu	37	5	139060312	139060312	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139060312C>T	uc010jfg.1	+	2	494	c.204C>T	c.(202-204)CCC>CCT	p.P68P	CXXC5_uc003let.2_Silent_p.P68P	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	68					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGTGAGCCCCTCAACAAGA	0.632													29	96					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139189308	139189308	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139189308G>A	uc003leu.1	+	2	488	c.283G>A	c.(283-285)GAG>AAG	p.E95K		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	95					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGATTCAGCGGAGTCCAGGCC	0.612													34	109					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139192923	139192924	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139192923_139192924GG>AA	uc003leu.1	+	3	606_607	c.401_402GG>AA	c.(400-402)CGG>CAA	p.R134Q		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	134					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGATGTGCGGGATGGCTTCA	0.614													25	99					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139193282	139193282	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139193282G>A	uc003leu.1	+	3	965	c.760G>A	c.(760-762)GGC>AGC	p.G254S		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	254					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGCCCTCAGGGCCCAGGGGG	0.612													9	20					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139197070	139197070	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139197070G>A	uc003leu.1	+	5	1226	c.1021G>A	c.(1021-1023)GAG>AAG	p.E341K		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	341	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGCAGCAACGAGTTTAGCAG	0.587													26	56					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139216447	139216447	+	Silent	SNP	C	T	T	rs143306197		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139216447C>T	uc003leu.1	+	10	1660	c.1455C>T	c.(1453-1455)TTC>TTT	p.F485F		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	485					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGACAAGTTCGGGACAGGCA	0.607													36	71					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139216801	139216801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139216801G>A	uc003leu.1	+	11	1848	c.1643G>A	c.(1642-1644)GGG>GAG	p.G548E		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	548	PH.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGCTCAAAGGGACCATCCTG	0.622													34	66					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139221945	139221945	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139221945C>T	uc003leu.1	+	15	2407	c.2202C>T	c.(2200-2202)GCC>GCT	p.A734A		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	734					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCGGCTGGCCACTCTGGAAG	0.552													22	61					0	0	1	0	0
NRG2	9542	broad.mit.edu	37	5	139231339	139231339	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139231339G>A	uc003lex.1	-	9	1847	c.1622C>T	c.(1621-1623)TCA>TTA	p.S541L	NRG2_uc003lev.1_Missense_Mutation_p.S549L|NRG2_uc003lew.1_Missense_Mutation_p.S543L|NRG2_uc003ley.1_Missense_Mutation_p.S535L	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	541	Cytoplasmic (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTACCCACTGATGATAGCAT	0.632													18	51					0	0	1	0	0
NRG2	9542	broad.mit.edu	37	5	139232060	139232060	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139232060G>A	uc003lex.1	-	8	1726	c.1501C>T	c.(1501-1503)CCT>TCT	p.P501S	NRG2_uc003lev.1_Missense_Mutation_p.P509S|NRG2_uc003lew.1_Missense_Mutation_p.P503S|NRG2_uc003ley.1_Missense_Mutation_p.P495S	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	501	Cytoplasmic (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGTGAGAAGGAGAACAGGAG	0.532													11	87					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139876656	139876656	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139876656C>T	uc003lfs.1	+	15	2921	c.2797C>T	c.(2797-2799)CCA>TCA	p.P933S	ANKHD1_uc003lfq.1_Missense_Mutation_p.P952S|ANKHD1_uc003lfr.2_Missense_Mutation_p.P933S|ANKHD1_uc003lft.1_Intron|ANKHD1_uc003lfu.1_Missense_Mutation_p.P413S|ANKHD1_uc003lfv.1_Intron	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	933						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTATCATCTCCACAGTGTAA	0.398													60	170					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139884519	139884519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139884519C>T	uc003lfs.1	+	16	3242	c.3118C>T	c.(3118-3120)CCT>TCT	p.P1040S	ANKHD1_uc003lfq.1_Missense_Mutation_p.P1059S|ANKHD1_uc003lfr.2_Missense_Mutation_p.P1040S|ANKHD1_uc003lft.1_Missense_Mutation_p.P251S|ANKHD1_uc003lfu.1_Missense_Mutation_p.P520S|ANKHD1_uc003lfv.1_Missense_Mutation_p.P117S	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1040						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCGATGCCTCCTGTGTATCC	0.413													36	97					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139889761	139889761	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139889761C>T	uc003lfs.1	+	22	4223	c.4099C>T	c.(4099-4101)CGC>TGC	p.R1367C	ANKHD1_uc003lfq.1_Missense_Mutation_p.R1386C|ANKHD1_uc003lfr.2_Missense_Mutation_p.R1367C|ANKHD1_uc003lft.1_Missense_Mutation_p.R578C|ANKHD1_uc003lfu.1_Missense_Mutation_p.R847C|ANKHD1_uc003lfv.1_Missense_Mutation_p.R444C|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.R106C|ANKHD1_uc003lfw.2_Missense_Mutation_p.R5C	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1367						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCAGCATTTCGCAAGGTAAT	0.388													28	55					0	0	1	0	0
APBB3	10307	broad.mit.edu	37	5	139938380	139938380	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139938380G>A	uc003lgd.1	-	12	1625	c.1266C>T	c.(1264-1266)GCC>GCT	p.A422A	SRA1_uc003lfz.2_5'Flank|SRA1_uc010jfm.2_5'Flank|SRA1_uc003lga.2_5'Flank|APBB3_uc003lgb.1_Silent_p.A194A|APBB3_uc003lgc.1_Silent_p.A194A|APBB3_uc003lge.1_Silent_p.A415A|APBB3_uc003lgf.1_RNA|APBB3_uc010jfp.1_RNA|APBB3_uc011czi.1_Silent_p.A194A	NM_133172	NP_573418	O95704	APBB3_HUMAN	amyloid beta precursor protein-binding, family	417	PID 2.					actin cytoskeleton|cytoplasm				ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCTGCAGAGGCCACAAGAC	0.627													19	50					0	0	1	0	0
APBB3	10307	broad.mit.edu	37	5	139942061	139942061	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:139942061G>A	uc003lgd.1	-	5	734	c.375C>T	c.(373-375)GGC>GGT	p.G125G	APBB3_uc003lgb.1_5'UTR|APBB3_uc003lgc.1_5'UTR|APBB3_uc003lge.1_Silent_p.G125G|APBB3_uc003lgf.1_RNA|APBB3_uc010jfp.1_RNA|APBB3_uc011czi.1_5'UTR|APBB3_uc010jfq.1_5'Flank|SLC35A4_uc003lgg.1_5'Flank|SLC35A4_uc003lgh.1_5'Flank	NM_133172	NP_573418	O95704	APBB3_HUMAN	amyloid beta precursor protein-binding, family	125	PID 1.					actin cytoskeleton|cytoplasm				ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTCTACCCAGCCCAGAGAGC	0.572													70	203					0	0	1	0	0
CD14	929	broad.mit.edu	37	5	140011714	140011714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140011714G>A	uc003lgi.1	-	2	1209	c.855C>T	c.(853-855)TTC>TTT	p.F285F	CD14_uc003lgj.1_Silent_p.F285F	NM_000591	NP_000582	P08571	CD14_HUMAN	CD14 antigen precursor	285	LRR 9.				apoptosis|cellular response to lipopolysaccharide|cellular response to lipoteichoic acid|inflammatory response|innate immune response|phagocytosis|positive regulation of tumor necrosis factor production|Toll signaling pathway	anchored to membrane|plasma membrane	lipopolysaccharide binding|lipoteichoic acid binding|opsonin receptor activity|peptidoglycan receptor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGCCCAGCGAACGACAGAT	0.612													13	71					0	0	1	0	0
CD14	929	broad.mit.edu	37	5	140011718	140011718	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140011718G>A	uc003lgi.1	-	2	1205	c.851C>T	c.(850-852)TCG>TTG	p.S284L	CD14_uc003lgj.1_Missense_Mutation_p.S284L	NM_000591	NP_000582	P08571	CD14_HUMAN	CD14 antigen precursor	284	LRR 9.				apoptosis|cellular response to lipopolysaccharide|cellular response to lipoteichoic acid|inflammatory response|innate immune response|phagocytosis|positive regulation of tumor necrosis factor production|Toll signaling pathway	anchored to membrane|plasma membrane	lipopolysaccharide binding|lipoteichoic acid binding|opsonin receptor activity|peptidoglycan receptor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCAGCGAACGACAGATTGAG	0.617													20	65					0	0	1	0	0
HARS2	23438	broad.mit.edu	37	5	140075096	140075096	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140075096C>T	uc003lgx.2	+	5	619	c.403C>T	c.(403-405)CCC>TCC	p.P135S	HARS2_uc010jfv.1_Missense_Mutation_p.P65S|HARS2_uc011czr.1_Missense_Mutation_p.P110S|HARS2_uc011czs.1_Intron|HARS2_uc011czt.1_Intron|HARS2_uc011czu.1_5'UTR	NM_012208	NP_036340	P49590	SYHM_HUMAN	histidyl-tRNA synthetase 2 precursor	135					histidyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|histidine-tRNA ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGTGAGGTTCCCTTTGCTCG	0.488													61	194					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167039	140167039	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140167039C>T	uc003lhb.2	+	1	1164	c.1164C>T	c.(1162-1164)TCC>TCT	p.S388S	PCDHA1_uc003lha.2_Silent_p.S388S|PCDHA1_uc003lgz.2_Silent_p.S388S	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	388	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACTTGCTCCTTAATGCCCC	0.567													61	116					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167170	140167170	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140167170C>T	uc003lhb.2	+	1	1295	c.1295C>T	c.(1294-1296)TCG>TTG	p.S432L	PCDHA1_uc003lha.2_Missense_Mutation_p.S432L|PCDHA1_uc003lgz.2_Missense_Mutation_p.S432L	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	432	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGGGGGCTCGCCTTCGCTG	0.632													55	151					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167176	140167176	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140167176C>T	uc003lhb.2	+	1	1301	c.1301C>T	c.(1300-1302)TCG>TTG	p.S434L	PCDHA1_uc003lha.2_Missense_Mutation_p.S434L|PCDHA1_uc003lgz.2_Missense_Mutation_p.S434L	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	434	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTCGCCTTCGCTGTGGGCC	0.627													48	151					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167678	140167678	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140167678G>A	uc003lhb.2	+	1	1803	c.1803G>A	c.(1801-1803)TCG>TCA	p.S601S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lgz.2_Silent_p.S601S	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	601	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCCGACTCGGGCTACAACG	0.667													45	94					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167993	140167993	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140167993G>A	uc003lhb.2	+	1	2118	c.2118G>A	c.(2116-2118)GCG>GCA	p.A706A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lgz.2_Silent_p.A706A	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	706	Helical; (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCATCTGCGCGGTGTCCAGCC	0.682													35	76					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140174612	140174612	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140174612C>T	uc003lhd.2	+	1	169	c.63C>T	c.(61-63)CTC>CTT	p.L21L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.L21L|PCDHA2_uc011czy.1_Silent_p.L21L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	21					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTGCTCCTCGCAGCCTGGG	0.622													28	74					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140174721	140174721	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140174721G>A	uc003lhd.2	+	1	278	c.172G>A	c.(172-174)GAG>AAG	p.E58K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E58K|PCDHA2_uc011czy.1_Missense_Mutation_p.E58K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	58	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGCTGGAGGAGCTGGTGCC	0.632													76	135					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175117	140175117	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140175117G>A	uc003lhd.2	+	1	674	c.568G>A	c.(568-570)GAA>AAA	p.E190K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E190K|PCDHA2_uc011czy.1_Missense_Mutation_p.E190K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	190	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAACTAAGCGAATCTTTGTC	0.458													38	93					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175833	140175833	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140175833G>A	uc003lhd.2	+	1	1390	c.1284G>A	c.(1282-1284)CGG>CGA	p.R428R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.R428R|PCDHA2_uc011czy.1_Silent_p.R428R	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	428	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACCGCACGGGACGGGGGCT	0.632													70	124					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176128	140176128	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140176128G>A	uc003lhd.2	+	1	1685	c.1579G>A	c.(1579-1581)GAA>AAA	p.E527K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E527K|PCDHA2_uc011czy.1_Missense_Mutation_p.E527K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	527	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCACGAGGAAGTGGAGCT	0.687													47	122					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176476	140176476	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140176476C>T	uc003lhd.2	+	1	2033	c.1927C>T	c.(1927-1929)CCT>TCT	p.P643S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.P643S|PCDHA2_uc011czy.1_Missense_Mutation_p.P643S	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	643	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTGACTCCCCTCGACACCG	0.637													29	66					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176787	140176787	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140176787G>A	uc003lhd.2	+	1	2344	c.2238G>A	c.(2236-2238)GGG>GGA	p.G746G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.G746G|PCDHA2_uc011czy.1_Silent_p.G746G	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	746	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCCGTGGGGAGCTGGTCTT	0.672													35	67					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181341	140181341	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140181341G>A	uc003lhf.2	+	1	559	c.559G>A	c.(559-561)GAG>AAG	p.E187K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.E187K	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	187	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGAAATGATGAGGAAATTAA	0.373													40	57					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181386	140181386	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140181386C>T	uc003lhf.2	+	1	604	c.604C>T	c.(604-606)CGA>TGA	p.R202*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Nonsense_Mutation_p.R202*	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	202	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAATTTAAATCGAGAGGACAC	0.363													12	109					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181539	140181539	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140181539G>A	uc003lhf.2	+	1	757	c.757G>A	c.(757-759)GAA>AAA	p.E253K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.E253K	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	253	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGATTACTCGAAAATGCACC	0.443													24	53					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182108	140182108	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140182108C>T	uc003lhf.2	+	1	1326	c.1326C>T	c.(1324-1326)TCC>TCT	p.S442S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.S442S	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	442	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGCGTGTCCGTGGAGGTGG	0.652													61	133					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182156	140182156	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140182156C>T	uc003lhf.2	+	1	1374	c.1374C>T	c.(1372-1374)TCC>TCT	p.S458S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.S458S	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	458	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTCGCAGTCCGAGTACACGG	0.667													51	115					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182171	140182171	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140182171C>T	uc003lhf.2	+	1	1389	c.1389C>T	c.(1387-1389)TTC>TTT	p.F463F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.F463F	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	463	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACACGGTGTTCGTGAAGGAGA	0.662													19	153					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182444	140182444	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140182444C>T	uc003lhf.2	+	1	1662	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.F554F	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	554	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTGTTCGTGCTGGACG	0.687													19	156					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182558	140182558	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140182558G>A	uc003lhf.2	+	1	1776	c.1776G>A	c.(1774-1776)GCG>GCA	p.A592A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.A592A	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	592	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGTGGTAGCGAAGGTGCGCG	0.687													30	93					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182885	140182885	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140182885C>T	uc003lhf.2	+	1	2103	c.2103C>T	c.(2101-2103)ATC>ATT	p.I701I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.I701I	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	701	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTACTTGATCGTCGCCATCT	0.662													13	151					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140183064	140183064	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140183064G>A	uc003lhf.2	+	1	2282	c.2282G>A	c.(2281-2283)GGA>GAA	p.G761E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.G761E	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	761	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGTGCTCTGGAGAGGGGTTG	0.607													33	108					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140186830	140186830	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140186830C>T	uc003lhi.2	+	1	159	c.58C>T	c.(58-60)CTC>TTC	p.L20F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.L20F|PCDHA4_uc011daa.1_Missense_Mutation_p.L20F	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	20					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTACTTCTTCTCCTCGCAGC	0.567													53	125					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187042	140187042	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140187042C>T	uc003lhi.2	+	1	371	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.I90I|PCDHA4_uc011daa.1_Silent_p.I90I	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGGGAGG	0.622													40	96					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187260	140187261	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140187260_140187261GG>AA	uc003lhi.2	+	1	589_590	c.488_489GG>AA	c.(487-489)GGG>GAA	p.G163E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.G163E|PCDHA4_uc011daa.1_Missense_Mutation_p.G163E	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	163	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGATATCGGGGAGAACGCCC	0.525													31	88					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187670	140187670	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140187670G>A	uc003lhi.2	+	1	999	c.898G>A	c.(898-900)GGA>AGA	p.G300R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.G300R|PCDHA4_uc011daa.1_Missense_Mutation_p.G300R	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	300	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAATTACTGGACAAATTAT	0.358													26	124					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187672	140187672	+	Silent	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140187672A>C	uc003lhi.2	+	1	1001	c.900A>C	c.(898-900)GGA>GGC	p.G300G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.G300G|PCDHA4_uc011daa.1_Silent_p.G300G	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	300	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAATTACTGGACAAATTATTG	0.353													29	128					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187953	140187953	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140187953C>T	uc003lhi.2	+	1	1282	c.1181C>T	c.(1180-1182)CCC>CTC	p.P394L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.P394L|PCDHA4_uc011daa.1_Missense_Mutation_p.P394L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	394	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCCACGTCCCCTTCAAGCTG	0.592													19	173					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188055	140188055	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140188055G>A	uc003lhi.2	+	1	1384	c.1283G>A	c.(1282-1284)CGA>CAA	p.R428Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.R428Q|PCDHA4_uc011daa.1_Missense_Mutation_p.R428Q	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	428	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGACCGCGCGAGACGGGGGC	0.617													45	154					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188164	140188164	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140188164G>A	uc003lhi.2	+	1	1493	c.1392G>A	c.(1390-1392)GTG>GTA	p.V464V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.V464V|PCDHA4_uc011daa.1_Silent_p.V464V	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	464	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGTGTTCGTGAAGGAGAACA	0.642													36	72					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188507	140188507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140188507G>A	uc003lhi.2	+	1	1836	c.1735G>A	c.(1735-1737)GAG>AAG	p.E579K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.E579K|PCDHA4_uc011daa.1_Missense_Mutation_p.E579K	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	579	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCAGTGAGCGAGCTGGTGCC	0.662													19	75					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188634	140188634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140188634C>T	uc003lhi.2	+	1	1963	c.1862C>T	c.(1861-1863)CCG>CTG	p.P621L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.P621L|PCDHA4_uc011daa.1_Missense_Mutation_p.P621L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	621	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCGCATCCCGTTCCGCGTG	0.672													25	84					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140189125	140189125	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140189125C>T	uc003lhi.2	+	1	2454	c.2353C>T	c.(2353-2355)CAG>TAG	p.Q785*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Nonsense_Mutation_p.Q785*|PCDHA4_uc011daa.1_Nonsense_Mutation_p.Q785*	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	785	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGAGAAGATCAGCTGCAGAC	0.468													16	170					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201489	140201489	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140201489C>T	uc003lhl.2	+	1	129	c.129C>T	c.(127-129)TTC>TTT	p.F43F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.F43F|PCDHA5_uc003lhj.1_Silent_p.F43F	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	43	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGGAACCTTCGTTGGCCGCA	0.667													28	127					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202010	140202010	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140202010G>A	uc003lhl.2	+	1	650	c.650G>A	c.(649-651)GGA>GAA	p.G217E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.G217E|PCDHA5_uc003lhj.1_Missense_Mutation_p.G217E	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	217	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTGATGGAGGAAAACCCGAA	0.358													46	125					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202114	140202114	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140202114G>A	uc003lhl.2	+	1	754	c.754G>A	c.(754-756)GAA>AAA	p.E252K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.E252K|PCDHA5_uc003lhj.1_Missense_Mutation_p.E252K	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	252	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGATTGTTGGAAAATGCACC	0.363													25	104					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202461	140202461	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140202461C>T	uc003lhl.2	+	1	1101	c.1101C>T	c.(1099-1101)GTC>GTT	p.V367V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.V367V|PCDHA5_uc003lhj.1_Silent_p.V367V	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	367	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGCACGGTCATTGCTCTGA	0.537													53	93					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203019	140203019	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140203019C>T	uc003lhl.2	+	1	1659	c.1659C>T	c.(1657-1659)TTC>TTT	p.F553F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.F553F|PCDHA5_uc003lhj.1_Silent_p.F553F	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	553	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTGTTCGTGCTGGACG	0.706													31	77					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207969	140207969	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140207969G>A	uc003lho.2	+	1	320	c.293G>A	c.(292-294)CGG>CAG	p.R98Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.R98Q|PCDHA6_uc011dab.1_Missense_Mutation_p.R98Q	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	98	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGTGCGGGCGGAGCGCGGAG	0.587													93	303					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208133	140208133	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140208133C>T	uc003lho.2	+	1	484	c.457C>T	c.(457-459)CCA>TCA	p.P153S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.P153S|PCDHA6_uc011dab.1_Missense_Mutation_p.P153S	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	153	Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTGTGTTTCCACTGGAGGG	0.483													38	134					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208515	140208515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140208515C>T	uc003lho.2	+	1	866	c.839C>T	c.(838-840)TCT>TTT	p.S280F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.S280F|PCDHA6_uc011dab.1_Missense_Mutation_p.S280F	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	280	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTTCATATTCTTTTAATAGC	0.388													69	144					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208798	140208798	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140208798G>A	uc003lho.2	+	1	1149	c.1122G>A	c.(1120-1122)GTG>GTA	p.V374V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.V374V|PCDHA6_uc011dab.1_Silent_p.V374V	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	374	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAATTAGCGTGAACGACCTCG	0.498													60	160					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208940	140208940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140208940G>A	uc003lho.2	+	1	1291	c.1264G>A	c.(1264-1266)GAG>AAG	p.E422K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.E422K|PCDHA6_uc011dab.1_Missense_Mutation_p.E422K	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	422	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCGGCCTATGAGTTGGTGGT	0.617													73	214					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209452	140209452	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140209452G>A	uc003lho.2	+	1	1803	c.1776G>A	c.(1774-1776)GCG>GCA	p.A592A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Silent_p.A592A	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	592	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGTGGTGGCGAAGGTGCGCG	0.687													27	97					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209644	140209644	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140209644G>A	uc003lho.2	+	1	1995	c.1968G>A	c.(1966-1968)GAG>GAA	p.E656E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Silent_p.E656E	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	656	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCACGGTGAGCCGGCGCTGA	0.697													18	84					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214889	140214889	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140214889T>C	uc003lhq.2	+	1	921	c.921T>C	c.(919-921)CAT>CAC	p.H307H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.H307H	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	307	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATAGGACATATGGATTTTG	0.448													16	27					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215263	140215263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140215263C>T	uc003lhq.2	+	1	1295	c.1295C>T	c.(1294-1296)TCG>TTG	p.S432L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.S432L	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	432	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGGGGGCTCGCCTTCTCTG	0.622													54	142					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215333	140215333	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140215333C>T	uc003lhq.2	+	1	1365	c.1365C>T	c.(1363-1365)TTC>TTT	p.F455F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.F455F	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	455	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCGGCGTTCGCGCAGCCCG	0.677													33	88					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215640	140215640	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140215640G>A	uc003lhq.2	+	1	1672	c.1672G>A	c.(1672-1674)GAG>AAG	p.E558K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.E558K	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	558	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCTGGACGAGAACGACAA	0.692													56	129					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216007	140216007	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140216007C>T	uc003lhq.2	+	1	2039	c.2039C>T	c.(2038-2040)TCG>TTG	p.S680L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.S680L	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	680	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGGCGTCGTCGCGGGCATCG	0.627													28	102					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216077	140216077	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140216077C>T	uc003lhq.2	+	1	2109	c.2109C>T	c.(2107-2109)GCC>GCT	p.A703A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.A703A	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	703	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATCATCGCCATCTGCGCGG	0.612													13	135					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221126	140221126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140221126C>T	uc003lhs.2	+	1	220	c.220C>T	c.(220-222)CTT>TTT	p.L74F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.L74F	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	74	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACACCGGGACCTTCTGGAGGT	0.642													24	220					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221334	140221334	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140221334C>T	uc003lhs.2	+	1	428	c.428C>T	c.(427-429)TCA>TTA	p.S143L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.S143L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	143	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGTTTGTTTCAGAATCCAGA	0.517													49	113					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222037	140222037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140222037C>T	uc003lhs.2	+	1	1131	c.1131C>T	c.(1129-1131)CTC>CTT	p.L377L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.L377L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	377	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAACGACCTCGATTCAGGTG	0.517													53	112					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222216	140222217	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140222216_140222217CC>TT	uc003lhs.2	+	1	1310_1311	c.1310_1311CC>TT	c.(1309-1311)GCC>GTT	p.A437V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.A437V	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	437	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGCTGTGGGCCACCGCCAGCT	0.653													31	33					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222493	140222493	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140222493G>A	uc003lhs.2	+	1	1587	c.1587G>A	c.(1585-1587)GAG>GAA	p.E529E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.E529E	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	529	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGAGCTAGAGCTGCTGCAGT	0.677													69	39					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222682	140222682	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140222682G>A	uc003lhs.2	+	1	1776	c.1776G>A	c.(1774-1776)GCG>GCA	p.A592A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.A592A	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	592	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGTGGTAGCGAAGGTGCGCG	0.697													24	24					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222729	140222729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140222729C>T	uc003lhs.2	+	1	1823	c.1823C>T	c.(1822-1824)TCG>TTG	p.S608L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.S608L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	608	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGTGGCTTTCGTATGAGCTG	0.682													20	29					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222821	140222821	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140222821G>A	uc003lhs.2	+	1	1915	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.E639K	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	639	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCCTGGACGAAGCGGACTC	0.647													49	41					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229372	140229372	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140229372G>A	uc003lhu.2	+	1	2016	c.1292G>A	c.(1291-1293)GGC>GAC	p.G431D	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.G431D	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	431	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGGACGGGGGCTCGCCTTCA	0.632													14	87					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140230326	140230326	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140230326C>T	uc003lhu.2	+	1	2970	c.2246C>T	c.(2245-2247)TCG>TTG	p.S749L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.S749L	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	749	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGAGTTGGTCGTACTCGCAG	0.647													43	36					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140230425	140230425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140230425C>T	uc003lhu.2	+	1	3069	c.2345C>T	c.(2344-2346)TCT>TTT	p.S782F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.S782F	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	782	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTGCTGGATCTACAGAGCGA	0.488													45	42					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140230471	140230471	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140230471G>A	uc003lhu.2	+	1	3115	c.2391G>A	c.(2389-2391)GGG>GGA	p.G797G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.G797G	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	797	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCAACTGGGAAGGTGGGTT	0.423													33	26					0	0	1	0	0
PCDHA10	56139	broad.mit.edu	37	5	140235691	140235691	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140235691C>T	uc003lhx.2	+	1	58	c.58C>T	c.(58-60)CTC>TTC	p.L20F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.L20F|PCDHA10_uc011dad.1_Missense_Mutation_p.L20F	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	20					homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTTCTTCTCCTCGCAGCCTG	0.592													18	51					0	0	1	0	0
PCDHA10	56139	broad.mit.edu	37	5	140235919	140235919	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140235919G>C	uc003lhx.2	+	1	286	c.286G>C	c.(286-288)GGG>CGG	p.G96R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.G96R|PCDHA10_uc011dad.1_Missense_Mutation_p.G96R	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	96	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGCTGTGCGGGCGGAGCGT	0.562													9	196					0	0	1	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249931	140249931	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140249931G>A	uc003lia.2	+	1	2101	c.1243G>A	c.(1243-1245)GAG>AAG	p.E415K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.E415K	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	415	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGGACCGCGAGAACGTGTG	0.627													67	180					0	0	1	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250110	140250110	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140250110C>T	uc003lia.2	+	1	2280	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.F474F	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	474	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCACATCTTCACAGTGTCGG	0.662													58	139					0	0	1	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250254	140250254	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140250254G>A	uc003lia.2	+	1	2424	c.1566G>A	c.(1564-1566)TTG>TTA	p.L522L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.L522L	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	522	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGCCGTTGGACCACGAGG	0.682													55	149					0	0	1	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250700	140250700	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140250700G>A	uc003lia.2	+	1	2870	c.2012G>A	c.(2011-2013)AGC>AAC	p.S671N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.S671N	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	671	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGGTGGAGAGCGGACAGGCG	0.662													16	68					0	0	1	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250719	140250719	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140250719C>T	uc003lia.2	+	1	2889	c.2031C>T	c.(2029-2031)GCC>GCT	p.A677A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.A677A	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	677	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCAAAGGCCTCTTCCCGGA	0.652													7	82					0	0	1	0	0
PCDHA11	56138	broad.mit.edu	37	5	140251067	140251067	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140251067T>C	uc003lia.2	+	1	3237	c.2379T>C	c.(2377-2379)AAT>AAC	p.N793N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.N793N	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	793	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGGGTCAAATCACCCCGGAC	0.463													3	15					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255182	140255182	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140255182G>A	uc003lic.2	+	1	252	c.125G>A	c.(124-126)GGC>GAC	p.G42D	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.G42D	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	42	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCAAACACGGCACCTTCGTG	0.677													29	95					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255871	140255871	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140255871G>A	uc003lic.2	+	1	941	c.814G>A	c.(814-816)GGA>AGA	p.G272R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.G272R	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	272	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAGACGAAGGACTTAATGG	0.383													39	130					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256043	140256043	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140256043C>T	uc003lic.2	+	1	1113	c.986C>T	c.(985-987)TCC>TTC	p.S329F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.S329F	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	329	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGATTCCTTCCATGGCAGGT	0.433													27	67					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256431	140256431	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140256431C>T	uc003lic.2	+	1	1501	c.1374C>T	c.(1372-1374)CCC>CCT	p.P458P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.P458P	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	458	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGCGCAGCCCGAGTACACAG	0.657													31	152					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256729	140256729	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140256729G>A	uc003lic.2	+	1	1799	c.1672G>A	c.(1672-1674)GAG>AAG	p.E558K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.E558K	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	558	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCTGGACGAGAACGACAA	0.701													66	153					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262462	140262462	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140262462G>A	uc003lif.2	+	1	609	c.609G>A	c.(607-609)GAG>GAA	p.E203E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.E203E|PCDHA13_uc003lid.2_Silent_p.E203E	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	203	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGACAGAGAGGAAATTCAGG	0.448													8	98					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262588	140262588	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140262588C>T	uc003lif.2	+	1	735	c.735C>T	c.(733-735)TCC>TCT	p.S245S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.S245S|PCDHA13_uc003lid.2_Silent_p.S245S	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	245	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTACCAATCCGTTTATAAAG	0.453													34	96					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262636	140262636	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140262636G>A	uc003lif.2	+	1	783	c.783G>A	c.(781-783)GTG>GTA	p.V261V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.V261V|PCDHA13_uc003lid.2_Silent_p.V261V	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	261	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAACATTAGTGATCAAGCTAA	0.423													36	114					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263426	140263426	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140263426C>T	uc003lif.2	+	1	1573	c.1573C>T	c.(1573-1575)CAC>TAC	p.H525Y	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.H525Y|PCDHA13_uc003lid.2_Missense_Mutation_p.H525Y	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	525	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCGTTGGACCACGAGGAGCT	0.682													18	193					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263531	140263531	+	Missense_Mutation	SNP	G	A	A	rs139225969	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140263531G>A	uc003lif.2	+	1	1678	c.1678G>A	c.(1678-1680)GAC>AAC	p.D560N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.D560N|PCDHA13_uc003lid.2_Missense_Mutation_p.D560N	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	560	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACGAGAACGACAACGCTCC	0.697													47	114					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307140	140307140	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140307140C>T	uc003lih.2	+	1	839	c.663C>T	c.(661-663)ATC>ATT	p.I221I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.I221I	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	221	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGTCACCATCATTGTGGTGG	0.582													12	47					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307420	140307420	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140307420G>A	uc003lih.2	+	1	1119	c.943G>A	c.(943-945)GAA>AAA	p.E315K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.E315K	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	315	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGAGGGACGAAGGTGTCTT	0.547													54	133					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307510	140307510	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140307510C>T	uc003lih.2	+	1	1209	c.1033C>T	c.(1033-1035)CTT>TTT	p.L345F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.L345F	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	345	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTCCTGACTCTTTCGAACCC	0.527													48	115					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307514	140307514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140307514C>T	uc003lih.2	+	1	1213	c.1037C>T	c.(1036-1038)TCG>TTG	p.S346L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.S346L	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	346	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGACTCTTTCGAACCCAGTA	0.517													9	147					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307705	140307705	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140307705G>A	uc003lih.2	+	1	1404	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.E410K	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	410	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGATCAGTGAATACCAAGT	0.527													8	67					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307828	140307828	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140307828G>A	uc003lih.2	+	1	1527	c.1351G>A	c.(1351-1353)GAA>AAA	p.E451K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.E451K	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	451	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCCCAGCAGGAACTTTTCGT	0.527													53	95					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308563	140308563	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140308563C>T	uc003lih.2	+	1	2262	c.2086C>T	c.(2086-2088)CTG>TTG	p.L696L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.L696L	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	696	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTTTTATTTCTGGGGTGCTT	0.478													49	146					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347522	140347522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140347522G>A	uc003lii.2	+	1	1411	c.1171G>A	c.(1171-1173)GAC>AAC	p.D391N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.D391N	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	391	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGTGTCAATGACCAAGACTC	0.552													30	69					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348028	140348028	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140348028G>A	uc003lii.2	+	1	1917	c.1677G>A	c.(1675-1677)CTG>CTA	p.L559L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.L559L	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	559	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCACCACTGAGCAGCACTG	0.527													26	75					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348124	140348124	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140348124C>T	uc003lii.2	+	1	2013	c.1773C>T	c.(1771-1773)TTC>TTT	p.F591F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.F591F	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	591	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCAGCCTTCGAGATGGTGC	0.517													19	33					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348165	140348165	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140348165C>T	uc003lii.2	+	1	2054	c.1814C>T	c.(1813-1815)ACC>ATC	p.T605I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.T605I	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	605	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACCTGGTCACCAAAGTCATA	0.517													18	40					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348302	140348302	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140348302G>A	uc003lii.2	+	1	2191	c.1951G>A	c.(1951-1953)GAG>AAG	p.E651K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.E651K	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	651	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATGGGAGATGAGAGTGGTAG	0.498													21	49					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348338	140348338	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140348338C>T	uc003lii.2	+	1	2227	c.1987C>T	c.(1987-1989)CGA>TGA	p.R663*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Nonsense_Mutation_p.R663*	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	663	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGGTGGTCCGAGATAATGG	0.498													13	47					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348411	140348411	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140348411T>C	uc003lii.2	+	1	2300	c.2060T>C	c.(2059-2061)ATC>ACC	p.I687T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.I687T	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	687	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTTCCAAAATCCTCCCTGAC	0.443													21	61					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348695	140348695	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140348695C>T	uc003lii.2	+	1	2584	c.2344C>T	c.(2344-2346)CGA>TGA	p.R782*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Nonsense_Mutation_p.R782*	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	782	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATTGAAGTTCGAGGGAATGG	0.507													21	58					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348709	140348709	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140348709C>T	uc003lii.2	+	1	2598	c.2358C>T	c.(2356-2358)TCC>TCT	p.S786S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.S786S	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	786	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAATGGCTCCCTCACCAAGA	0.512													20	54					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348807	140348807	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140348807C>T	uc003lii.2	+	1	2696	c.2456C>T	c.(2455-2457)CCT>CTT	p.P819L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.P819L	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	819	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCAGGGCCTTCGGGAGCC	0.522													15	57					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140358575	140358575	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140358575G>A	uc003lii.2	+	2	2847	c.2607G>A	c.(2605-2607)CTG>CTA	p.L869L	PCDHA1_uc003lha.2_Silent_p.L548L|PCDHA1_uc003lhb.2_Silent_p.L812L|PCDHA2_uc003lhd.2_Silent_p.L810L|PCDHA3_uc003lhf.2_Silent_p.L812L|PCDHA4_uc003lhi.2_Silent_p.L809L|PCDHA4_uc003lhh.1_Silent_p.L809L|PCDHA5_uc003lhk.1_Silent_p.L798L|PCDHA5_uc003lhl.2_Silent_p.L798L|PCDHA6_uc003lhn.2_Silent_p.L548L|PCDHA6_uc003lho.2_Silent_p.L812L|PCDHA7_uc003lhq.2_Silent_p.L799L|PCDHA8_uc003lhs.2_Silent_p.L812L|PCDHA9_uc003lhu.2_Silent_p.L812L|PCDHA10_uc003lhw.2_Silent_p.L547L|PCDHA10_uc003lhx.2_Silent_p.L810L|PCDHA11_uc003lia.2_Silent_p.L811L|PCDHA12_uc003lic.2_Silent_p.L803L|PCDHA13_uc003lie.1_Silent_p.L812L|PCDHA13_uc003lif.2_Silent_p.L812L|PCDHAC1_uc003lih.2_Silent_p.L825L	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	869	4 X 4 AA repeats of P-X-X-P.|Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCCTCCCTGAGAGCAGGCA	0.468													15	73					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140362060	140362060	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140362060C>T	uc003lii.2	+	3	2865	c.2625C>T	c.(2623-2625)AGC>AGT	p.S875S	PCDHA1_uc003lha.2_Silent_p.S554S|PCDHA1_uc003lhb.2_Silent_p.S818S|PCDHA2_uc003lhd.2_Silent_p.S816S|PCDHA3_uc003lhf.2_Silent_p.S818S|PCDHA4_uc003lhi.2_Silent_p.S815S|PCDHA4_uc003lhh.1_Silent_p.S815S|PCDHA5_uc003lhk.1_Silent_p.S804S|PCDHA5_uc003lhl.2_Silent_p.S804S|PCDHA6_uc003lhn.2_Silent_p.S554S|PCDHA6_uc003lho.2_Silent_p.S818S|PCDHA7_uc003lhq.2_Silent_p.S805S|PCDHA8_uc003lhs.2_Silent_p.S818S|PCDHA9_uc003lhu.2_Silent_p.S818S|PCDHA10_uc003lhw.2_Silent_p.S553S|PCDHA10_uc003lhx.2_Silent_p.S816S|PCDHA11_uc003lia.2_Silent_p.S817S|PCDHA12_uc003lic.2_Silent_p.S809S|PCDHA13_uc003lie.1_Silent_p.S818S|PCDHA13_uc003lif.2_Silent_p.S818S|PCDHAC1_uc003lih.2_Silent_p.S831S	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	875	4 X 4 AA repeats of P-X-X-P.|Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTTATTCAGCTCTGTGCACC	0.502													28	56					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140389325	140389325	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140389325G>A	uc003lii.2	+	4	3067	c.2827G>A	c.(2827-2829)GAC>AAC	p.D943N	PCDHA1_uc003lha.2_Missense_Mutation_p.D622N|PCDHA1_uc003lhb.2_Missense_Mutation_p.D886N|PCDHA2_uc003lhd.2_Missense_Mutation_p.D884N|PCDHA3_uc003lhf.2_Missense_Mutation_p.D886N|PCDHA4_uc003lhi.2_Missense_Mutation_p.D883N|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Missense_Mutation_p.D872N|PCDHA6_uc003lhn.2_Missense_Mutation_p.D622N|PCDHA6_uc003lho.2_Missense_Mutation_p.D886N|PCDHA7_uc003lhq.2_Missense_Mutation_p.D873N|PCDHA8_uc003lhs.2_Missense_Mutation_p.D886N|PCDHA9_uc003lhu.2_Missense_Mutation_p.D886N|PCDHA10_uc003lhw.2_Missense_Mutation_p.D621N|PCDHA10_uc003lhx.2_Missense_Mutation_p.D884N|PCDHA11_uc003lia.2_Missense_Mutation_p.D885N|PCDHA12_uc003lic.2_Missense_Mutation_p.D877N|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Missense_Mutation_p.D886N|PCDHAC1_uc003lih.2_Missense_Mutation_p.D899N	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	943	4 X 4 AA repeats of P-X-X-P.|Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAGTTGCCCGACAAATTCAT	0.507													8	97					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431416	140431416	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140431416G>A	uc003lik.1	+	1	438	c.361G>A	c.(361-363)GTC>ATC	p.V121I		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	121	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGGGCCGAGGTCAGGGTATT	0.517													18	57					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431664	140431664	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140431664G>A	uc003lik.1	+	1	686	c.609G>A	c.(607-609)GAG>GAA	p.E203E		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	203	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGACCGAGAGGAGCAGCCTG	0.582													5	32					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431712	140431712	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140431712C>T	uc003lik.1	+	1	734	c.657C>T	c.(655-657)TCC>TCT	p.S219S		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	219	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACGGCGGGTCCCCGCCTAAGT	0.592													7	17					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431856	140431856	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140431856G>A	uc003lik.1	+	1	878	c.801G>A	c.(799-801)GTG>GTA	p.V267V		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	267	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGACTGCCGTGGACCTAGACG	0.517													9	38					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432190	140432190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140432190G>A	uc003lik.1	+	1	1212	c.1135G>A	c.(1135-1137)GGA>AGA	p.G379R		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	379	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CATTCGAGTGGGAGGAAAAGT	0.498													29	53					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432226	140432226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140432226C>T	uc003lik.1	+	1	1248	c.1171C>T	c.(1171-1173)CCC>TCC	p.P391S		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	391	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGAAGACCTTCCCTTTGTAAT	0.473													41	77					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432511	140432511	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140432511C>T	uc003lik.1	+	1	1533	c.1456C>T	c.(1456-1458)CAA>TAA	p.Q486*		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	486	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGAGAATGCCCAAATAACATA	0.423													13	55					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433101	140433101	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140433101A>G	uc003lik.1	+	1	2123	c.2046A>G	c.(2044-2046)AGA>AGG	p.R682R		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	682	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCATTCTAGAAAGGTAAATC	0.438													59	195					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433147	140433147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140433147C>T	uc003lik.1	+	1	2169	c.2092C>T	c.(2092-2094)CTT>TTT	p.L698F		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	698	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCTGGTCATCCTTTCCTTTCT	0.373													51	174					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433410	140433410	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140433410G>A	uc003lik.1	+	1	2432	c.2355G>A	c.(2353-2355)GGG>GGA	p.G785G		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	785	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATGCCACTGGGGAGATAAAAA	0.453													40	106					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433422	140433422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140433422G>A	uc003lik.1	+	1	2444	c.2367G>A	c.(2365-2367)ATG>ATA	p.M789I		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	789	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGATAAAAATGGAGGCTGGCT	0.448													40	98					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474453	140474453	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140474453C>T	uc003lil.2	+	1	217	c.79C>T	c.(79-81)CAG>TAG	p.Q27*	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	27					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGCATAGCTCAGGCTAGTTG	0.522													27	58					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474538	140474538	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140474538G>A	uc003lil.2	+	1	302	c.164G>A	c.(163-165)GGG>GAG	p.G55E	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	55	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAAGACCTGGGGCTGGAGATA	0.512													14	64					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474636	140474636	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140474636T>G	uc003lil.2	+	1	400	c.262T>G	c.(262-264)TTA>GTA	p.L88V	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	88	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGATTTGTTGTTAAATGAGAA	0.512													43	93					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474657	140474657	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140474657G>A	uc003lil.2	+	1	421	c.283G>A	c.(283-285)GAG>AAG	p.E95K	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	95	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTGGACCGGGAGGAGCTGTG	0.512													28	96					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475124	140475124	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140475124G>A	uc003lil.2	+	1	888	c.750G>A	c.(748-750)GAG>GAA	p.E250E	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	250	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCTCTATGAGGTGCAGATCC	0.522													9	63					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475258	140475258	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140475258G>A	uc003lil.2	+	1	1022	c.884G>A	c.(883-885)CGA>CAA	p.R295Q	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	295	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAAACGTTTCGATTAAGTGCA	0.428													10	103					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475273	140475273	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140475273C>T	uc003lil.2	+	1	1037	c.899C>T	c.(898-900)TCG>TTG	p.S300L	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	300	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTGCAAAATCGGGAGAACTG	0.413													38	73					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475757	140475757	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140475757C>T	uc003lil.2	+	1	1521	c.1383C>T	c.(1381-1383)TTC>TTT	p.F461F	PCDHB2_uc003lim.1_Silent_p.F122F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	461	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGTTCGTCCGCGAGA	0.632													54	207					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475911	140475911	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140475911G>A	uc003lil.2	+	1	1675	c.1537G>A	c.(1537-1539)GGC>AGC	p.G513S	PCDHB2_uc003lim.1_Missense_Mutation_p.G174S	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	513	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCGGACAACGGCCACCTGTT	0.701													58	171					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476693	140476693	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140476693C>T	uc003lil.2	+	1	2457	c.2319C>T	c.(2317-2319)ATC>ATT	p.I773I	PCDHB2_uc003lim.1_Silent_p.I434I	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	773	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCCAATTATCCCCAACTTCG	0.512													39	89					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480282	140480282	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140480282C>T	uc003lio.2	+	1	49	c.49C>T	c.(49-51)CTC>TTC	p.L17F	uc003lin.2_RNA	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	17					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTCTTGCTTCTCTTTGTTTT	0.502													8	68					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480344	140480344	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140480344G>A	uc003lio.2	+	1	111	c.111G>A	c.(109-111)GAG>GAA	p.E37E	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	37	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGTGGCTGAGGAAAAAGAGA	0.512													7	59					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480398	140480398	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140480398G>A	uc003lio.2	+	1	165	c.165G>A	c.(163-165)AGG>AGA	p.R55R	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	55	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGGACTAAGGGTAGAGGAAC	0.512													29	86					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480413	140480413	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140480413C>T	uc003lio.2	+	1	180	c.180C>T	c.(178-180)GCC>GCT	p.A60A	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	60	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGAACTGGCCGCGAGGGGGG	0.507													35	79					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480622	140480622	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140480622C>T	uc003lio.2	+	1	389	c.389C>T	c.(388-390)TCT>TTT	p.S130F	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	130	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AATGACCATTCTCCGGTATTC	0.413													45	107					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480800	140480800	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140480800G>A	uc003lio.2	+	1	567	c.567G>A	c.(565-567)AGG>AGA	p.R189R	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	189	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGACGGAAGGAAGTACCCGG	0.567													23	82					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481105	140481105	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140481105C>T	uc003lio.2	+	1	872	c.872C>T	c.(871-873)ACT>ATT	p.T291I	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	291	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTCGCAAAACTTTTCAGCTA	0.373													26	55					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481610	140481610	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140481610C>T	uc003lio.2	+	1	1377	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	459	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding	p.F459S(1)		ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGTTCGTCCGCGAGA	0.602													86	199					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481842	140481842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140481842G>A	uc003lio.2	+	1	1609	c.1609G>A	c.(1609-1611)GGC>AGC	p.G537S	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	537	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACAGACCGTGGCTCCCCGGC	0.677													36	93					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481952	140481952	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140481952C>T	uc003lio.2	+	1	1719	c.1719C>T	c.(1717-1719)ACC>ACT	p.T573T	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	573	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCCCTGCACCGAGCTGGTGC	0.701													26	92					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501656	140501656	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140501656C>T	uc003lip.1	+	1	76	c.76C>T	c.(76-78)CGC>TGC	p.R26C		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	26					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTCTCAGGTTCGCCTCGAGCC	0.502													27	67					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501770	140501770	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140501770C>A	uc003lip.1	+	1	190	c.190C>A	c.(190-192)CGG>AGG	p.R64R		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	64	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGGTCAGCCCGGGTGCTGTC	0.567													22	68					7.41877e-09	7.44078e-09	1	1	0
PCDHB4	56131	broad.mit.edu	37	5	140501994	140501994	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140501994C>T	uc003lip.1	+	1	414	c.414C>T	c.(412-414)CTC>CTT	p.L138L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	138	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGAAGTGCTCTTGAAAATAC	0.408													30	86					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502563	140502563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140502563G>A	uc003lip.1	+	1	983	c.983G>A	c.(982-984)GGA>GAA	p.G328E		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	328	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCCTTTCTGGAAAAGGCACT	0.418													95	211					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503381	140503381	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140503381C>T	uc003lip.1	+	1	1801	c.1801C>T	c.(1801-1803)CTG>TTG	p.L601L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	601	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAACGCCTGGCTGTCGTACCA	0.731													39	89					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503592	140503592	+	Missense_Mutation	SNP	C	T	T	rs146284769		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140503592C>T	uc003lip.1	+	1	2012	c.2012C>T	c.(2011-2013)CCT>CTT	p.P671L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	671	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTACCTGCCTCTCCCTGAG	0.682													35	153					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515442	140515443	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140515442_140515443CC>TT	uc003liq.2	+	1	643_644	c.426_427CC>TT	c.(424-429)ATCCCA>ATTTCA	p.P143S		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	143	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTAAAAATCCCAGAGAGCAC	0.441													20	87					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515551	140515551	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140515551C>T	uc003liq.2	+	1	752	c.535C>T	c.(535-537)CAT>TAT	p.H179Y		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	179	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCACACTTTCATGTTGCTAC	0.507													33	83					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515802	140515802	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140515802C>T	uc003liq.2	+	1	1003	c.786C>T	c.(784-786)GTC>GTT	p.V262V		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	262	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTTAGTTGTCGTTGTCTCCG	0.453													130	258					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516156	140516156	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140516156G>A	uc003liq.2	+	1	1357	c.1140G>A	c.(1138-1140)ATG>ATA	p.M380I		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	380	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACGGTAGGATGATTTGCTCCA	0.488													32	78					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516601	140516601	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140516601C>T	uc003liq.2	+	1	1802	c.1585C>T	c.(1585-1587)CGC>TGC	p.R529C		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	529	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTCGAGTTCCGCGTGGGAGC	0.682													55	88					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516686	140516686	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140516686C>T	uc003liq.2	+	1	1887	c.1670C>T	c.(1669-1671)TCG>TTG	p.S557L		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	557	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACGACAACTCGCCCTTCGTG	0.716													30	59					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516978	140516978	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140516978C>T	uc003liq.2	+	1	2179	c.1962C>T	c.(1960-1962)ACC>ACT	p.T654T		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	654	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTCGGCCACCGCCACGCTGC	0.731													18	119					0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530017	140530017	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140530017C>T	uc003lir.2	+	1	179	c.179C>T	c.(178-180)TCG>TTG	p.S60L	PCDHB6_uc011dah.1_Intron	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	60	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGCTGGCTTCGCGGGGCGCT	0.507													49	109					0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530577	140530577	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140530577G>A	uc003lir.2	+	1	739	c.739G>A	c.(739-741)GAA>AAA	p.E247K	PCDHB6_uc011dah.1_Missense_Mutation_p.E111K	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	247	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAGCTCTATGAAGCACAAGT	0.547													19	39					0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530609	140530609	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140530609C>T	uc003lir.2	+	1	771	c.771C>T	c.(769-771)GGC>GGT	p.G257G	PCDHB6_uc011dah.1_Silent_p.G121G	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	257	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCCCCTCGGCTCTCTGGTTA	0.507													15	43					0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531185	140531185	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140531185C>T	uc003lir.2	+	1	1347	c.1347C>T	c.(1345-1347)TTC>TTT	p.F449F	PCDHB6_uc011dah.1_Silent_p.F313F	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	449	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCCGCCTTCACCCAAACCT	0.582													72	176					0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140532154	140532154	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140532154C>T	uc003lir.2	+	1	2316	c.2316C>T	c.(2314-2316)TTC>TTT	p.F772F	PCDHB6_uc011dah.1_Silent_p.F636F	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	772	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCCCAACTTCCCTCCTCAGG	0.483													26	96					0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140532181	140532181	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140532181G>A	uc003lir.2	+	1	2343	c.2343G>A	c.(2341-2343)ATG>ATA	p.M781I	PCDHB6_uc011dah.1_Missense_Mutation_p.M645I	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	781	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGAGAGAAATGGAAGAAACCC	0.433													9	85					0	0	1	0	0
PCDHB17	54661	broad.mit.edu	37	5	140537091	140537091	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140537091C>T	uc003lis.2	+	1	1512	c.1512C>T	c.(1510-1512)GTC>GTT	p.V504V		NR_001280				SubName: Full=Protocadherin-psi1;												0						CCTCCCTGGTCTCCATCAACA	0.652													58	197					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140552501	140552501	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140552501G>A	uc003lit.2	+	1	259	c.85G>A	c.(85-87)GAA>AAA	p.E29K		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	29	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCTGGCGCCGAACCGCTTCG	0.517													25	101					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553026	140553026	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140553026G>A	uc003lit.2	+	1	784	c.610G>A	c.(610-612)GAG>AAG	p.E204K		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	204	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGATCGGGAAGAGATACCAGA	0.507													9	88					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553072	140553072	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140553072C>T	uc003lit.2	+	1	830	c.656C>T	c.(655-657)TCT>TTT	p.S219F		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	219	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GACGGCGGCTCTCCTCCAAGA	0.547													20	68					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553608	140553608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140553608G>A	uc003lit.2	+	1	1366	c.1192G>A	c.(1192-1194)GAA>AAA	p.E398K		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	398	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCATCTGTCGAAAACTTCTA	0.493													36	53					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553899	140553899	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140553899G>A	uc003lit.2	+	1	1657	c.1483G>A	c.(1483-1485)GAC>AAC	p.D495N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	495	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCGTCCCAGGACCCGCACCT	0.662													49	162					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553997	140553997	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140553997C>T	uc003lit.2	+	1	1755	c.1581C>T	c.(1579-1581)TTC>TTT	p.F527F		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	527	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGGCGTTCGAGTTCCGCG	0.701													54	106					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554157	140554157	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140554157G>A	uc003lit.2	+	1	1915	c.1741G>A	c.(1741-1743)GAG>AAG	p.E581K		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	581	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGGGCGGCCGAGCCGGGCTA	0.711													37	119					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558038	140558038	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140558038G>A	uc011dai.1	+	1	609	c.423G>A	c.(421-423)GTG>GTA	p.V141V	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	141	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAATGTTGGTGAAAGTATCAG	0.413													33	105					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558075	140558075	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140558075C>T	uc011dai.1	+	1	646	c.460C>T	c.(460-462)CCT>TCT	p.P154S	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	154	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GACTGCGTTTCCTCTGAAGAA	0.438													45	191					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559002	140559002	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140559002G>A	uc011dai.1	+	1	1573	c.1387G>A	c.(1387-1389)GAG>AAG	p.E463K	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	463	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTCGTCCGCGAGAACAACAG	0.627													85	323					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559123	140559123	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140559123C>T	uc011dai.1	+	1	1694	c.1508C>T	c.(1507-1509)TCC>TTC	p.S503F	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	503	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCCTCGCCTCCCTGGTCTCC	0.667													59	314					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559734	140559734	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140559734C>T	uc011dai.1	+	1	2305	c.2119C>T	c.(2119-2121)CTC>TTC	p.L707F	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	707	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTCTCGGTGCTCCTGTTCGT	0.672													46	200					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559762	140559762	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140559762G>A	uc011dai.1	+	1	2333	c.2147G>A	c.(2146-2148)AGG>AAG	p.R716K	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	716	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGCTGTGTAGGAGGAGCAGG	0.657													22	206					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562537	140562537	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140562537G>A	uc003liv.2	+	1	1558	c.403G>A	c.(403-405)GAA>AAA	p.E135K	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	135	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CATGTTCACTGAAAAGGAAAT	0.378													18	49					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563283	140563283	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140563283C>T	uc003liv.2	+	1	2304	c.1149C>T	c.(1147-1149)TCC>TCT	p.S383S	PCDHB16_uc010jfw.1_Silent_p.S55S	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	383	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGACGATTTCCTCCATCCAGG	0.483													15	95					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140564245	140564245	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140564245C>T	uc003liv.2	+	1	3266	c.2111C>T	c.(2110-2112)TCG>TTG	p.S704L	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	704	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCCTCTTTTCGGTGCTCCTG	0.697													79	139					0	0	1	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568521	140568521	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140568521G>A	uc003liw.1	+	3	1630	c.1630G>A	c.(1630-1632)GAG>AAG	p.E544K		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	544	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTTGAGCAGCGAGGCGCTGGT	0.687													11	113					0	0	1	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568849	140568849	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140568849C>T	uc003liw.1	+	3	1958	c.1958C>T	c.(1957-1959)TCG>TTG	p.S653L		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	653	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTCCTCGCTCGGCCACCGCC	0.706													28	141					0	0	1	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568987	140568987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140568987C>T	uc003liw.1	+	3	2096	c.2096C>T	c.(2095-2097)TCG>TTG	p.S699L	PCDHB10_uc003lix.2_5'Flank	NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	699	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCGGTGTCTTCGCTCTTCCTC	0.697													44	237					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572149	140572149	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140572149C>T	uc003lix.2	+	1	198	c.24C>T	c.(22-24)TTC>TTT	p.F8F		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	8					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTTGTGCTTCCCAAGACAAA	0.473													58	158					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573509	140573509	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140573509G>A	uc003lix.2	+	1	1558	c.1384G>A	c.(1384-1386)GAG>AAG	p.E462K		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	462	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTCGTCCGCGAGAACAACAG	0.627													65	185					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573667	140573667	+	Silent	SNP	C	T	T	rs17844573		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140573667C>T	uc003lix.2	+	1	1716	c.1542C>T	c.(1540-1542)TTC>TTT	p.F514F		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	514	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCACCTGTTCGCCCTCAGGT	0.701													51	316					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579609	140579609	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140579609G>A	uc003liy.2	+	1	262	c.262G>A	c.(262-264)GAA>AAA	p.E88K	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	88	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTCTTAAGTGAAACACTAGA	0.493													49	96					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579921	140579921	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140579921C>T	uc003liy.2	+	1	574	c.574C>T	c.(574-576)CCC>TCC	p.P192S	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	192	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAGGAAATACCCCGAGTTAGT	0.463													16	66					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580008	140580008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140580008C>T	uc003liy.2	+	1	661	c.661C>T	c.(661-663)CCC>TCC	p.P221S	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	221	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGGTCCCCTCCCAGGTCTGG	0.512													37	100					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580266	140580266	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140580266C>T	uc003liy.2	+	1	919	c.919C>T	c.(919-921)CTG>TTG	p.L307L	PCDHB11_uc011daj.1_5'UTR	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	307	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGAGCACCTCTGGATTTTGA	0.358													45	78					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580471	140580471	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140580471C>T	uc003liy.2	+	1	1124	c.1124C>T	c.(1123-1125)TCT>TTT	p.S375F	PCDHB11_uc011daj.1_Missense_Mutation_p.S10F	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	375	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GATATAGACTCTGGGGACAAC	0.428													32	110					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580483	140580483	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140580483G>A	uc003liy.2	+	1	1136	c.1136G>A	c.(1135-1137)GGA>GAA	p.G379E	PCDHB11_uc011daj.1_Missense_Mutation_p.G14E	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	379	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGGACAACGGAAGAATTGTT	0.433													35	114					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580505	140580505	+	Silent	SNP	G	A	A	rs57445845	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140580505G>A	uc003liy.2	+	1	1158	c.1158G>A	c.(1156-1158)CCG>CCA	p.P386P	PCDHB11_uc011daj.1_Silent_p.P21P	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	386	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTCCATTCCGGAAGACCTCC	0.448													32	114					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580591	140580592	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140580591_140580592CC>TT	uc003liy.2	+	1	1244_1245	c.1244_1245CC>TT	c.(1243-1245)GCC>GTT	p.A415V	PCDHB11_uc011daj.1_Missense_Mutation_p.A50V	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	415	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGAGCACAGCCGAGTACAATA	0.495													31	127					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580724	140580724	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140580724C>T	uc003liy.2	+	1	1377	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	PCDHB11_uc011daj.1_Silent_p.F94F	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	459	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGTTCGTCCGCGAGA	0.587													62	223					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580800	140580800	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140580800C>T	uc003liy.2	+	1	1453	c.1453C>T	c.(1453-1455)CAG>TAG	p.Q485*	PCDHB11_uc011daj.1_Nonsense_Mutation_p.Q120*	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	485	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACCAACGCCCAGGTCAACTA	0.632													75	202					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140581303	140581303	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140581303C>T	uc003liy.2	+	1	1956	c.1956C>T	c.(1954-1956)CGC>CGT	p.R652R	PCDHB11_uc011daj.1_Silent_p.R287R	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	652	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCCTCCGCGCTCGGCCACCG	0.721													21	57					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140581366	140581366	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140581366C>T	uc003liy.2	+	1	2019	c.2019C>T	c.(2017-2019)CTC>CTT	p.L673L	PCDHB11_uc011daj.1_Silent_p.L308L	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	673	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCTGCCGCTCCCTGAGGCGG	0.682													41	144					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140588852	140588852	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140588852G>A	uc003liz.2	+	1	562	c.373G>A	c.(373-375)GAT>AAT	p.D125N	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	125	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCAGGTCAGGGATATAAATGA	0.443													61	143					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590255	140590255	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140590255G>A	uc003liz.2	+	1	1965	c.1776G>A	c.(1774-1776)GTG>GTA	p.V592V	PCDHB12_uc011dak.1_Silent_p.V255V	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	592	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGTGGCGGTGGACGGTGACT	0.701													15	301					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594352	140594352	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140594352C>T	uc003lja.1	+	1	844	c.657C>T	c.(655-657)GGC>GGT	p.G219G		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	219	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGATGGTGGCTCTCCGCCCA	0.532													36	142					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594458	140594458	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140594458G>A	uc003lja.1	+	1	950	c.763G>A	c.(763-765)GAC>AAC	p.D255N		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	255	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GATCTCTGAGGACAGTCCGGT	0.498													79	223					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594625	140594625	+	Silent	SNP	C	T	T	rs150808997		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140594625C>T	uc003lja.1	+	1	1117	c.930C>T	c.(928-930)TTC>TTT	p.F310F		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	310	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACTCGATTTCGAAAAACTTC	0.378													74	147					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595325	140595325	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140595325G>A	uc003lja.1	+	1	1817	c.1630G>A	c.(1630-1632)GAG>AAG	p.E544K		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	544	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTGAGCAGCGAGGCGCTGGT	0.701													32	71					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140596022	140596022	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140596022C>T	uc003lja.1	+	1	2514	c.2327C>T	c.(2326-2328)CCC>CTC	p.P776L		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	776	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACTTCCCTCCCCAGTGCCCT	0.468													55	118					0	0	1	0	0
PCDHB14	56122	broad.mit.edu	37	5	140604454	140604454	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140604454C>T	uc003ljb.2	+	1	1377	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	PCDHB14_uc011dal.1_Silent_p.F306F	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	459	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGTTCGTCCGCGAGA	0.607													80	223					0	0	1	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605214	140605214	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140605214C>T	uc003ljb.2	+	1	2137	c.2137C>T	c.(2137-2139)CTG>TTG	p.L713L	PCDHB14_uc011dal.1_Silent_p.L560L	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	713	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCGGTGCGGCTGTGCAGGAG	0.692													46	245					0	0	1	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605356	140605356	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140605356G>A	uc003ljb.2	+	1	2279	c.2279G>A	c.(2278-2280)GGG>GAG	p.G760E	PCDHB14_uc011dal.1_Missense_Mutation_p.G607E	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	760	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAGGTTCCGGGACAAATGAG	0.512													43	122					0	0	1	0	0
PCDHB18	54660	broad.mit.edu	37	5	140615524	140615524	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140615524C>T	uc003ljc.1	+	1	1587	c.1239C>T	c.(1237-1239)CCC>CCT	p.P413P		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						ACAACAGCCCCGCCCTGCACA	0.637													87	275					0	0	1	0	0
PCDHB18	54660	broad.mit.edu	37	5	140615792	140615792	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140615792G>A	uc003ljc.1	+	1	1855	c.1507G>A	c.(1507-1509)GAC>AAC	p.D503N		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GGACGCCAACGACAACTCGCC	0.711													34	64					0	0	1	0	0
PCDHB18	54660	broad.mit.edu	37	5	140616020	140616020	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140616020G>A	uc003ljc.1	+	1	2083	c.1735G>A	c.(1735-1737)GAG>AAG	p.E579K		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GCTGCTGAGCGAGCGCGACGC	0.711													35	89					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625476	140625476	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140625476G>A	uc003lje.2	+	1	330	c.330G>A	c.(328-330)CTG>CTA	p.L110L		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	110	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGTGTTACTGAAAAAACCTT	0.438													46	116					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625528	140625528	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140625528G>A	uc003lje.2	+	1	382	c.382G>A	c.(382-384)GAT>AAT	p.D128N		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	128	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGACATAAACGATCATTCTCC	0.438													57	143					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626236	140626236	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140626236G>A	uc003lje.2	+	1	1090	c.1090G>A	c.(1090-1092)GAA>AAA	p.E364K		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	364	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCAGAGACAGAAGTGGCCCT	0.423													25	99					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626688	140626688	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140626688C>T	uc003lje.2	+	1	1542	c.1542C>T	c.(1540-1542)TTC>TTT	p.F514F		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	514	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCACCTGTTCGCTCTCCAGT	0.692													41	198					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140627270	140627270	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140627270C>T	uc003lje.2	+	1	2124	c.2124C>T	c.(2122-2124)TTC>TTT	p.F708F		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	708	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGTTCCTGTTCGTGGCAGTGC	0.677													54	265					0	0	1	0	0
SLC25A2	83884	broad.mit.edu	37	5	140682678	140682678	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140682678G>A	uc003ljf.2	-	1	935	c.755C>T	c.(754-756)ACC>ATC	p.T252I		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	252	Helical; Name=6; (Potential).|Solcar 3.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	ACTTAAGAGGGTACCAATAAA	0.428													17	48					0	0	1	0	0
SLC25A2	83884	broad.mit.edu	37	5	140683229	140683229	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140683229G>A	uc003ljf.2	-	1	384	c.204C>T	c.(202-204)GGC>GGT	p.G68G		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	68	Helical; Name=2; (Potential).|Solcar 1.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	TAAGTGCCGGGCCGGTGCCCT	0.577													29	90					0	0	1	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711077	140711077	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140711077G>A	uc003lji.1	+	1	826	c.826G>A	c.(826-828)GAA>AAA	p.E276K	PCDHGA1_uc011dan.1_Missense_Mutation_p.E276K	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	276	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCCAATGGGGAAGTAACGTA	0.438													19	51					0	0	1	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711218	140711218	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140711218G>A	uc003lji.1	+	1	967	c.967G>A	c.(967-969)GAT>AAT	p.D323N	PCDHGA1_uc011dan.1_Missense_Mutation_p.D323N	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	323	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAAGCCCAGGATGGTGCGGG	0.393													25	73					0	0	1	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712539	140712539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140712539C>T	uc003lji.1	+	1	2288	c.2288C>T	c.(2287-2289)TCG>TTG	p.S763L	PCDHGA1_uc011dan.1_Missense_Mutation_p.S763L	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	763	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTGCGGACTCGCGGAAGAGC	0.592													86	188					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140718688	140718688	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140718688G>A	uc003ljk.1	+	1	335	c.150G>A	c.(148-150)AAG>AAA	p.K50K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.K50K	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	50	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACATCGCCAAGGACTTGGGTT	0.617											OREG0016854	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	94					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140718804	140718804	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140718804G>A	uc003ljk.1	+	1	451	c.266G>A	c.(265-267)AGG>AAG	p.R89K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.R89K	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	89	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTGCGAACAGGATAGACCGG	0.547													20	103					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719089	140719089	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140719089G>A	uc003ljk.1	+	1	736	c.551G>A	c.(550-552)AGG>AAG	p.R184K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.R184K	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	184	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGTGCGAAGGGGAGCTGAT	0.562													33	92					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719097	140719097	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140719097G>A	uc003ljk.1	+	1	744	c.559G>A	c.(559-561)GAT>AAT	p.D187N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.D187N	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	187	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGGGGAGCTGATGGGAACAA	0.567													12	108					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719138	140719138	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140719138G>A	uc003ljk.1	+	1	785	c.600G>A	c.(598-600)CTG>CTA	p.L200L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.L200L	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	200	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGCTCTCTGGACCGCGAGG	0.587													29	61					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719243	140719243	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140719243G>A	uc003ljk.1	+	1	890	c.705G>A	c.(703-705)GCG>GCA	p.A235A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.A235A	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	235	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGGATGCGAACGACAATG	0.592													28	82					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719696	140719696	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140719696C>T	uc003ljk.1	+	1	1343	c.1158C>T	c.(1156-1158)CTC>CTT	p.L386L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.L386L	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	386	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGTTCACTCCCCGAGGATC	0.433													40	92					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720094	140720094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140720094C>T	uc003ljk.1	+	1	1741	c.1556C>T	c.(1555-1557)TCC>TTC	p.S519F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.S519F	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	519	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCACTGCGCTCCTTTGATTAT	0.507													68	117					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720829	140720829	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140720829G>A	uc003ljk.1	+	1	2476	c.2291G>A	c.(2290-2292)CGG>CAG	p.R764Q	PCDHGA1_uc003lji.1_Intron|PCDHGA3_uc003ljm.1_5'Flank|PCDHGA3_uc010jfx.1_5'Flank|PCDHGA2_uc011dao.1_Missense_Mutation_p.R764Q|PCDHGA3_uc011dap.1_5'Flank	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	764	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGGACTCGCGGAAGAGCCAC	0.562													22	216					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724405	140724405	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140724405C>T	uc003ljm.1	+	1	805	c.805C>T	c.(805-807)CCT>TCT	p.P269S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.P29S|PCDHGA3_uc011dap.1_Missense_Mutation_p.P269S	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	269	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCACTGACCCTGACGAGGG	0.473													9	44					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725003	140725003	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140725003G>A	uc003ljm.1	+	1	1403	c.1403G>A	c.(1402-1404)GGA>GAA	p.G468E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.G228E|PCDHGA3_uc011dap.1_Missense_Mutation_p.G468E	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	468	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACCCCAGAGGAGCCTCCATC	0.537													33	245					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725545	140725545	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140725545C>T	uc003ljm.1	+	1	1945	c.1945C>T	c.(1945-1947)CAC>TAC	p.H649Y	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.H409Y|PCDHGA3_uc011dap.1_Missense_Mutation_p.H649Y	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	649	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTCCAGGACCACGGCCAGCC	0.711													26	112					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725888	140725888	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140725888C>T	uc003ljm.1	+	1	2288	c.2288C>T	c.(2287-2289)TCG>TTG	p.S763L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.S523L|PCDHGA3_uc011dap.1_Missense_Mutation_p.S763L	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	763	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTGCGGACTCGCGGAAGAGC	0.612													39	206					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140729881	140729881	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140729881C>T	uc003ljo.1	+	1	54	c.54C>T	c.(52-54)TTC>TTT	p.F18F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Silent_p.F18F	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	18					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTTCCCTTCCTGCTGTCTT	0.522											OREG0016856	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	26					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730381	140730381	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140730381G>A	uc003ljo.1	+	1	554	c.554G>A	c.(553-555)GGA>GAA	p.G185E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.G185E	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	185	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTCCTGATGGAAGTAAATAT	0.468													42	207					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730425	140730425	+	Missense_Mutation	SNP	G	A	A	rs36001111		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140730425G>A	uc003ljo.1	+	1	598	c.598G>A	c.(598-600)GAA>AAA	p.E200K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.E200K	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	200	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTAGACAGGGAACATCAGAG	0.493													18	115					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731807	140731807	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140731807C>T	uc003ljo.1	+	1	1980	c.1980C>T	c.(1978-1980)TTC>TTT	p.F660F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Silent_p.F660F|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	660	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTAATCTTCGCGGATAGCC	0.657													40	116					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731945	140731945	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140731945G>A	uc003ljo.1	+	1	2118	c.2118G>A	c.(2116-2118)GCG>GCA	p.A706A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Silent_p.A706A|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	706	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATTCTAGCGATCGCCCTGC	0.612													63	179					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731956	140731956	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140731956G>T	uc003ljo.1	+	1	2129	c.2129G>T	c.(2128-2130)CGC>CTC	p.R710L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Missense_Mutation_p.R710L|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	710	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCGCCCTGCGCCTGCGACGT	0.612													38	185					2.35968e-33	2.37442e-33	1	1	0
PCDHGB1	56104	broad.mit.edu	37	5	140732107	140732107	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140732107G>A	uc003ljo.1	+	1	2280	c.2280G>A	c.(2278-2280)GAG>GAA	p.E760E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Silent_p.E760E|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	760	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAAAGACAGAGTTTAATTCTC	0.488													11	54					0	0	1	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140735225	140735225	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140735225C>T	uc003ljq.1	+	1	458	c.458C>T	c.(457-459)CCT>CTT	p.P153L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.P153L	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	153	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAAGATTTCCTCTTCCTGAA	0.458													7	35					0	0	1	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140735371	140735371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140735371C>T	uc003ljq.1	+	1	604	c.604C>T	c.(604-606)CGC>TGC	p.R202C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.R202C	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	202	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCTCTAGATCGCGAGGAAGA	0.557													11	16					0	0	1	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140735501	140735502	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140735501_140735502CC>TT	uc003ljq.1	+	1	734_735	c.734_735CC>TT	c.(733-735)CCC>CTT	p.P245L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.P245L	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	245	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCACTCAGCCCGAGTACCACG	0.535													15	26					0	0	1	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736825	140736825	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140736825C>T	uc003ljq.1	+	1	2058	c.2058C>T	c.(2056-2058)GAC>GAT	p.D686D	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGB2_uc003ljs.1_5'Flank|PCDHGA4_uc003ljp.1_Silent_p.D686D|PCDHGB2_uc011dar.1_5'Flank	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	686	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCCAGACGACTCGGGCCTCA	0.617													26	49					0	0	1	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736879	140736879	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140736879C>T	uc003ljq.1	+	1	2112	c.2112C>T	c.(2110-2112)TTC>TTT	p.F704F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGB2_uc003ljs.1_5'Flank|PCDHGA4_uc003ljp.1_Silent_p.F704F|PCDHGB2_uc011dar.1_5'Flank	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	704	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGCGTCTTCCTGGCTTTTG	0.612													22	51					0	0	1	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140737029	140737029	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140737029C>T	uc003ljq.1	+	1	2262	c.2262C>T	c.(2260-2262)TCC>TCT	p.S754S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGB2_uc003ljs.1_5'Flank|PCDHGA4_uc003ljp.1_Silent_p.S754S|PCDHGB2_uc011dar.1_5'Flank	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	754	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACCTATTCCCACGAGGTCT	0.602													27	123					0	0	1	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140740411	140740411	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140740411G>A	uc003ljs.1	+	1	709	c.709G>A	c.(709-711)GAT>AAT	p.D237N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Missense_Mutation_p.D237N	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	237	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGATGCCAACGATAACCCTCC	0.567													24	61					0	0	1	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140740765	140740765	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140740765C>T	uc003ljs.1	+	1	1063	c.1063C>T	c.(1063-1065)CCC>TCC	p.P355S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Missense_Mutation_p.P355S	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	355	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTATCTACTCCCCTACCGGA	0.458													21	60					0	0	1	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140741049	140741049	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140741049C>T	uc003ljs.1	+	1	1347	c.1347C>T	c.(1345-1347)GCC>GCT	p.A449A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Silent_p.A449A|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	449	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGATAATGCCCCAGTTTTCC	0.552													46	123					0	0	1	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140744773	140744773	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140744773C>T	uc003lju.1	+	1	876	c.876C>T	c.(874-876)TTC>TTT	p.F292F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.F292F	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	292	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGAGACTTTCCAACTTGATT	0.463													12	36					0	0	1	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745185	140745185	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140745185C>T	uc003lju.1	+	1	1288	c.1288C>T	c.(1288-1290)CCG>TCG	p.P430S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.P430S	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	430	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCATGGAACCCCGCCCCTCTC	0.458													45	115					0	0	1	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140746018	140746018	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140746018C>T	uc003lju.1	+	1	2121	c.2121C>T	c.(2119-2121)TTC>TTT	p.F707F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.F707F	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	707	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGGCCTTCGTCATCGTGC	0.602													28	293					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750162	140750162	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140750162G>A	uc003ljw.1	+	1	201	c.201G>A	c.(199-201)CGG>CGA	p.R67R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Silent_p.R67R	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	67	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAACCTGCGGGTTATTGCAG	0.542													18	195					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751521	140751521	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140751521C>T	uc003ljw.1	+	1	1560	c.1560C>T	c.(1558-1560)TTC>TTT	p.F520F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.F520F|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	520	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGAGCCTTCGACCACGAGC	0.682													8	70					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751918	140751918	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140751918C>T	uc003ljw.1	+	1	1957	c.1957C>T	c.(1957-1959)CCT>TCT	p.P653S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.P653S|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	653	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGACAGCAGCCTCTTTCAGC	0.647													25	64					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751993	140751993	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140751993C>T	uc003ljw.1	+	1	2032	c.2032C>T	c.(2032-2034)CGC>TGC	p.R678C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.R678C|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	678	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTTAGCGACCGCCCCACTCC	0.557													24	97					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140752118	140752118	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140752118C>T	uc003ljw.1	+	1	2157	c.2157C>T	c.(2155-2157)TCC>TCT	p.S719S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.S719S|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	719	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATGCTCCTCCAGACCCGCCA	0.557													17	56					0	0	1	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140755243	140755243	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140755243G>A	uc003ljy.1	+	1	1593	c.1593G>A	c.(1591-1593)TGG>TGA	p.W531*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Nonsense_Mutation_p.W531*	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	531	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACAGCTGTGGGTGACAGCCA	0.597													65	228					0	0	1	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140755960	140755960	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140755960C>T	uc003ljy.1	+	1	2310	c.2310C>T	c.(2308-2310)TTC>TTT	p.F770F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.F770F	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	770	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCTGATTTTCCCCCAGCCCA	0.517													32	120					0	0	1	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764587	140764587	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140764587C>T	uc003lka.1	+	1	2121	c.2121C>T	c.(2119-2121)TTC>TTT	p.F707F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGB4_uc003lkc.1_5'Flank|PCDHGA7_uc003ljz.1_Silent_p.F707F|PCDHGB4_uc011dav.1_5'Flank	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	707	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTAGCCTTCGTCCTCGTAC	0.627													28	69					0	0	1	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768559	140768559	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140768559C>T	uc003lkc.1	+	1	1108	c.1108C>T	c.(1108-1110)CGT>TGT	p.R370C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.R370C	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	370	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTCAAAGTCCGTGACAAGGA	0.398													20	77					0	0	1	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769799	140769799	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140769799C>T	uc003lkc.1	+	1	2348	c.2348C>T	c.(2347-2349)TCT>TTT	p.S783F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.S783F	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	783	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTGATTCATCTGGGGCCTTA	0.388													36	237					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772917	140772917	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140772917C>T	uc003lkd.1	+	1	1435	c.537C>T	c.(535-537)TCC>TCT	p.S179S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.S179S	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	179	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCACTTCTCCCTGGACGTGC	0.607													26	71					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140773318	140773318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140773318C>T	uc003lkd.1	+	1	1836	c.938C>T	c.(937-939)TCA>TTA	p.S313L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.S313L	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	313	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGAATGTTCATTTTATGAA	0.358													38	153					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140773898	140773898	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140773898C>T	uc003lkd.1	+	1	2416	c.1518C>T	c.(1516-1518)TCC>TCT	p.S506S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.S506S	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	506	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTATATCTCCATCAACTCTG	0.592													8	83					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140774646	140774646	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140774646G>A	uc003lkd.1	+	1	3164	c.2266G>A	c.(2266-2268)GAA>AAA	p.E756K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.E756K	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	756	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTATTCCCAGGAAGTCTCCCT	0.562													13	110					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140774727	140774727	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140774727G>A	uc003lkd.1	+	1	3245	c.2347G>A	c.(2347-2349)GAG>AAG	p.E783K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.E783K|PCDHGB5_uc011daw.1_5'Flank|PCDHGB5_uc003lkf.1_5'Flank	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	783	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCAGTCAGGAGGGCTGTGA	0.473													27	120					0	0	1	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140779344	140779344	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140779344C>T	uc003lkf.1	+	1	1650	c.1650C>T	c.(1648-1650)GAC>GAT	p.D550D	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.D550D	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	550	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGTGGGCGACCGAAACGACA	0.682													10	35					0	0	1	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140779449	140779449	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140779449C>T	uc003lkf.1	+	1	1755	c.1755C>T	c.(1753-1755)ACC>ACT	p.T585T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.T585T	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	585	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTGGTGACCAAGGTAGTGG	0.682													12	49					0	0	1	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140779595	140779595	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140779595C>T	uc003lkf.1	+	1	1901	c.1901C>T	c.(1900-1902)GCC>GTC	p.A634V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.A634V|PCDHGA9_uc011dax.1_5'Flank|PCDHGA9_uc003lkh.1_5'Flank	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	634	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGGACGCGGCCCGCCAGCGC	0.687													12	33					0	0	1	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140779772	140779772	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140779772C>T	uc003lkf.1	+	1	2078	c.2078C>T	c.(2077-2079)GCC>GTC	p.A693V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.A693V|PCDHGA9_uc011dax.1_5'Flank|PCDHGA9_uc003lkh.1_5'Flank	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	693	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGCCTTGGCCTTGATCTCA	0.617													47	265					0	0	1	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140780001	140780001	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140780001G>A	uc003lkf.1	+	1	2307	c.2307G>A	c.(2305-2307)TTG>TTA	p.L769L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.L769L|PCDHGA9_uc011dax.1_5'Flank|PCDHGA9_uc003lkh.1_5'Flank	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	769	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGAGCAATTGAGTTCAGGAC	0.438													34	305					0	0	1	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140782717	140782717	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140782717C>T	uc003lkh.1	+	1	198	c.198C>T	c.(196-198)ATC>ATT	p.I66I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.I66I	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	66	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGTCCGCATCGTCTCTAGAG	0.612													40	86					0	0	1	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140789314	140789314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140789314C>T	uc003lkj.1	+	1	1545	c.1545C>T	c.(1543-1545)TTC>TTT	p.F515F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Silent_p.F515F	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	515	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGTGGTGTTCGCGCAGCGCG	0.667													4	23					0	0	1	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140793597	140793597	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140793597C>T	uc003lkl.1	+	1	855	c.855C>T	c.(853-855)TTC>TTT	p.F285F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Silent_p.F285F	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	285	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATATTCATTCCGAAAATTAC	0.418													8	13					0	0	1	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140794788	140794788	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140794788C>T	uc003lkl.1	+	1	2046	c.2046C>T	c.(2044-2046)TTC>TTT	p.F682F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Silent_p.F682F|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	682	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGGCAGCTTCGAGTCTCCAG	0.657													57	137					0	0	1	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801196	140801196	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140801196C>T	uc003lkq.1	+	1	660	c.402C>T	c.(400-402)TTC>TTT	p.F134F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Silent_p.F134F|PCDHGA11_uc003lkp.1_Silent_p.F134F	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	134	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCCAGCTTCCAGGAGGACG	0.473													7	19					0	0	1	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140865966	140865966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140865966C>T	uc003lky.1	+	1	1226	c.1226C>T	c.(1225-1227)ACT>ATT	p.T409I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.T409I|PCDHGC5_uc011dbc.1_5'Flank|PCDHGC5_uc003lla.1_5'Flank	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	409	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCCTGGTGACTGCTGGACCC	0.527													24	47					0	0	1	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140866223	140866223	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:140866223C>T	uc003lky.1	+	1	1483	c.1483C>T	c.(1483-1485)CTG>TTG	p.L495L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Silent_p.L495L|PCDHGC5_uc011dbc.1_5'Flank|PCDHGC5_uc003lla.1_5'Flank	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	495	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTACTCACTCCTGGAGCCCAG	0.522													15	176					0	0	1	0	0
FCHSD1	89848	broad.mit.edu	37	5	141029033	141029033	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141029033G>A	uc003llk.2	-	5	355	c.304C>T	c.(304-306)CAG>TAG	p.Q102*	FCHSD1_uc010jgg.2_5'Flank|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	102									FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGACGCCTGGAGTCGGGTT	0.637													72	119					0	0	1	0	0
ARAP3	64411	broad.mit.edu	37	5	141044607	141044607	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141044607C>T	uc003llm.2	-	19	2760	c.2682G>A	c.(2680-2682)TGG>TGA	p.W894*	ARAP3_uc003lll.2_5'UTR|ARAP3_uc011dbe.1_Nonsense_Mutation_p.W556*|ARAP3_uc003lln.2_Nonsense_Mutation_p.W796*	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	894					cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						TGGCTGCGTTCCATGCCGTGA	0.652											OREG0016871	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	22					0	0	1	0	0
ARAP3	64411	broad.mit.edu	37	5	141051219	141051219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141051219C>T	uc003llm.2	-	12	1850	c.1772G>A	c.(1771-1773)GGA>GAA	p.G591E	ARAP3_uc011dbe.1_Missense_Mutation_p.G253E|ARAP3_uc003lln.2_Missense_Mutation_p.G513E	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	591	Arf-GAP.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						GATGAACTCTCCCCGGGGGCC	0.592													14	48					0	0	1	0	0
ARAP3	64411	broad.mit.edu	37	5	141052202	141052202	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141052202G>A	uc003llm.2	-	9	1380	c.1302C>T	c.(1300-1302)ATC>ATT	p.I434I	ARAP3_uc011dbe.1_Silent_p.I96I|ARAP3_uc003lln.2_Silent_p.I356I|ARAP3_uc003llo.1_Silent_p.I434I	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	434	PH 2.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						CGATGAAGCAGATCCCGATGC	0.642													19	31					0	0	1	0	0
ARAP3	64411	broad.mit.edu	37	5	141059121	141059121	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141059121G>A	uc003llm.2	-	4	767	c.689C>T	c.(688-690)GCT>GTT	p.A230V	ARAP3_uc003lln.2_Missense_Mutation_p.A152V|ARAP3_uc003llo.1_Missense_Mutation_p.A230V	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	230					cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						CCTGTGTTCAGCCCTGCCCTG	0.488													21	67					0	0	1	0	0
ARAP3	64411	broad.mit.edu	37	5	141059162	141059162	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141059162G>A	uc003llm.2	-	4	726	c.648C>T	c.(646-648)GCC>GCT	p.A216A	ARAP3_uc003lln.2_Silent_p.A138A|ARAP3_uc003llo.1_Silent_p.A216A	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	216					cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						TTCTGTCGGGGGCTCCTGGAG	0.572													15	61					0	0	1	0	0
KIAA0141	9812	broad.mit.edu	37	5	141309182	141309182	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141309182C>T	uc003lls.2	+	5	570	c.448C>T	c.(448-450)CCA>TCA	p.P150S	KIAA0141_uc003llt.2_Missense_Mutation_p.P150S	NM_001142603	NP_001136075	Q14154	DELE_HUMAN	hypothetical protein LOC9812 precursor	150					apoptosis|regulation of caspase activity	mitochondrion	protein binding			skin(1)	1		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCGATGGCCCAGCTCCCAG	0.507													20	95					0	0	1	0	0
PCDH12	51294	broad.mit.edu	37	5	141325255	141325255	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141325255C>T	uc003llx.2	-	4	4457	c.3246G>A	c.(3244-3246)GAG>GAA	p.E1082E		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	1082	Cytoplasmic (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTTGGCTCCTCCGTGGCTG	0.632													25	77					0	0	1	0	0
PCDH12	51294	broad.mit.edu	37	5	141336442	141336442	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141336442C>T	uc003llx.2	-	1	2186	c.975G>A	c.(973-975)AGG>AGA	p.R325R		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	325	Extracellular (Potential).|Cadherin 3.				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACCCAGGTCCCTTGCCTGAA	0.522													25	56					0	0	1	0	0
RNF14	9604	broad.mit.edu	37	5	141359747	141359747	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141359747C>A	uc003lly.2	+	5	933	c.894C>A	c.(892-894)TCC>TCA	p.S298S	RNF14_uc003llz.2_Silent_p.S298S|RNF14_uc003lma.2_Silent_p.S298S|RNF14_uc003lmb.2_Silent_p.S172S|RNF14_uc003lmc.2_Silent_p.S298S|RNF14_uc011dbg.1_Silent_p.S122S|RNF14_uc011dbh.1_Intron|RNF14_uc003lmd.2_Silent_p.S298S	NM_183399	NP_899646	Q9UBS8	RNF14_HUMAN	ring finger protein 14 isoform 1	298	IBR-type.				androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|protein ubiquitination|regulation of androgen receptor signaling pathway|regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|small conjugating protein ligase activity|transcription coactivator activity|zinc ion binding				0		all_hematologic(541;0.0536)|Ovarian(839;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.0407)		TCCTCCAGTCCTCCTTGGACC	0.542													41	185					2.24722e-20	2.25951e-20	1	1	0
FGF1	2246	broad.mit.edu	37	5	141993537	141993537	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:141993537C>T	uc003lmm.2	-	2	236	c.156G>A	c.(154-156)AGG>AGA	p.R52R	FGF1_uc011dbi.1_Silent_p.R52R|FGF1_uc003lmn.3_Silent_p.R52R|FGF1_uc003lmp.3_Silent_p.R52R|FGF1_uc003lmq.2_Silent_p.R52R|FGF1_uc010jgj.2_Silent_p.R52R|FGF1_uc003lmr.2_Silent_p.R52R|FGF1_uc003lms.3_Silent_p.R52R	NM_001144892	NP_001138364	P05230	FGF1_HUMAN	fibroblast growth factor 1 (acidic) isoform 1	52					angiogenesis|cellular response to heat|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cell migration|positive regulation of cholesterol biosynthetic process|positive regulation of intracellular protein kinase cascade|positive regulation of transcription from RNA polymerase II promoter	cell cortex|cytosol|extracellular space	fibroblast growth factor receptor binding|growth factor activity|heparin binding|S100 alpha binding				0		all_neural(839;0.0416)|Ovarian(839;0.0955)|all_hematologic(541;0.1)|Prostate(461;0.157)|Lung NSC(810;0.21)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00032)	Pentosan Polysulfate(DB00686)	GCTGGTCGCTCCTGTCCCTTG	0.537													7	57					0	0	1	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142435638	142435638	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:142435638C>T	uc011dbj.1	+	16	1454	c.1419C>T	c.(1417-1419)TTC>TTT	p.F473F	ARHGAP26_uc003lmt.2_Silent_p.F473F|ARHGAP26_uc003lmw.2_Silent_p.F473F	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	473	Rho-GAP.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAAGAAGTTTCATCAAAGCAG	0.343													12	135					0	0	1	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142437254	142437254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:142437254C>T	uc011dbj.1	+	17	1515	c.1480C>T	c.(1480-1482)CAT>TAT	p.H494Y	ARHGAP26_uc003lmt.2_Missense_Mutation_p.H494Y|ARHGAP26_uc003lmw.2_Missense_Mutation_p.H494Y	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	494	Rho-GAP.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGCCTTGTTCATCGGCTCCC	0.453													41	129					0	0	1	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142513531	142513531	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:142513531G>A	uc011dbj.1	+	19	1734	c.1699_splice	c.e19-1	p.I567_splice	ARHGAP26_uc003lmt.2_Splice_Site_p.I567_splice|ARHGAP26_uc003lmw.2_Splice_Site_p.I567_splice	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal						actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCGTTTGCAGATATTTAACA	0.517													88	193					0	0	1	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142586780	142586780	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:142586780C>T	uc011dbj.1	+	21	2041	c.2006C>T	c.(2005-2007)CCA>CTA	p.P669L	ARHGAP26_uc003lmt.2_Missense_Mutation_p.P669L|ARHGAP26_uc003lmw.2_Intron	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	669	Ser-rich.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AATCCAAGCCCAACTTCACCC	0.577													31	116					0	0	1	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142586786	142586786	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:142586786C>T	uc011dbj.1	+	21	2047	c.2012C>T	c.(2011-2013)TCA>TTA	p.S671L	ARHGAP26_uc003lmt.2_Missense_Mutation_p.S671L|ARHGAP26_uc003lmw.2_Intron	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	671	Ser-rich.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGCCCAACTTCACCCCTCTCG	0.592													33	114					0	0	1	0	0
NR3C1	2908	broad.mit.edu	37	5	142779665	142779665	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:142779665G>A	uc003lmz.2	-	2	1232	c.740C>T	c.(739-741)CCT>CTT	p.P247L	NR3C1_uc003lmy.2_Missense_Mutation_p.P247L|NR3C1_uc003lna.2_Missense_Mutation_p.P247L|NR3C1_uc003lnb.2_Missense_Mutation_p.P247L|NR3C1_uc011dbk.1_Intron|NR3C1_uc003lnc.2_Missense_Mutation_p.P247L|NR3C1_uc003lnd.2_Missense_Mutation_p.P247L|NR3C1_uc003lne.2_Missense_Mutation_p.P247L|NR3C1_uc003lnf.2_Missense_Mutation_p.P247L|NR3C1_uc003lng.2_Missense_Mutation_p.P247L|NR3C1_uc003lnh.2_Missense_Mutation_p.P247L|NR3C1_uc003lni.2_Missense_Mutation_p.P247L	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	247	Modulating.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	TAAAATGAGAGGCTTGCAGTC	0.423													59	137					0	0	1	0	0
KCTD16	57528	broad.mit.edu	37	5	143586489	143586489	+	Missense_Mutation	SNP	G	A	A	rs146836865		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:143586489G>A	uc003lnm.1	+	3	841	c.212G>A	c.(211-213)GGA>GAA	p.G71E	KCTD16_uc003lnn.1_Missense_Mutation_p.G71E	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	71	BTB.					cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			GACTCCAAGGGAAGGTTTTTC	0.463													12	28					0	0	1	0	0
KCTD16	57528	broad.mit.edu	37	5	143853238	143853238	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:143853238G>A	uc003lnm.1	+	4	1477	c.848G>A	c.(847-849)TGG>TAG	p.W283*	KCTD16_uc003lnn.1_Nonsense_Mutation_p.W283*	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	283						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			CCTTCCAGATGGTCACCCTCA	0.507													24	69					0	0	1	0	0
GRXCR2	643226	broad.mit.edu	37	5	145246165	145246165	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145246165C>T	uc003lns.1	-	2	463	c.463G>A	c.(463-465)GAG>AAG	p.E155K		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	155											0						ATCAGAGACTCTTCCTCAGCC	0.443													52	122					0	0	1	0	0
GRXCR2	643226	broad.mit.edu	37	5	145246231	145246231	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145246231G>A	uc003lns.1	-	2	397	c.397C>T	c.(397-399)CGA>TGA	p.R133*		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	133											0						ATTGGGGTTCGAATGATTTTC	0.398													36	88					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145379722	145379722	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145379722G>A	uc003lnt.2	+	3	718	c.480G>A	c.(478-480)GAG>GAA	p.E160E	SH3RF2_uc011dbl.1_Silent_p.E160E	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	160	SH3 1.						ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGCTTGATGAGAATTGGTACC	0.557													21	57					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393331	145393331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145393331C>T	uc003lnt.2	+	5	1004	c.766C>T	c.(766-768)CTT>TTT	p.L256F	SH3RF2_uc011dbl.1_Missense_Mutation_p.L256F	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	256							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CGCAAGACACCTTTTAGAGAA	0.507													11	89					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145427402	145427402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145427402C>T	uc003lnt.2	+	6	1365	c.1127C>T	c.(1126-1128)TCC>TTC	p.S376F	SH3RF2_uc011dbl.1_Missense_Mutation_p.S376F|SH3RF2_uc011dbm.1_5'Flank|SH3RF2_uc003lnu.2_5'Flank	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	376							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGCCTGGCTCCCAGCAACAC	0.537													20	54					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145427421	145427421	+	Silent	SNP	G	A	A	rs75157444	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145427421G>A	uc003lnt.2	+	6	1384	c.1146G>A	c.(1144-1146)GCG>GCA	p.A382A	SH3RF2_uc011dbl.1_Silent_p.A382A|SH3RF2_uc011dbm.1_5'Flank|SH3RF2_uc003lnu.2_5'Flank	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	382	SH3 3.						ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACCTCTCAGCGAACATGTGAG	0.527													41	29					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145435641	145435641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145435641G>A	uc003lnt.2	+	8	1658	c.1420G>A	c.(1420-1422)GGT>AGT	p.G474S	SH3RF2_uc011dbl.1_Missense_Mutation_p.G474S|SH3RF2_uc011dbm.1_5'UTR|SH3RF2_uc003lnu.2_5'UTR|SH3RF2_uc011dbn.1_5'UTR	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	474							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CATTTCAGAAGGTGATCCACG	0.557													66	182					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439619	145439619	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145439619C>T	uc003lnt.2	+	9	1984	c.1746C>T	c.(1744-1746)CTC>CTT	p.L582L	SH3RF2_uc011dbl.1_Silent_p.L582L|SH3RF2_uc011dbm.1_Silent_p.L67L|SH3RF2_uc003lnu.2_Silent_p.L73L|SH3RF2_uc011dbn.1_Silent_p.L73L|SH3RF2_uc011dbo.1_Silent_p.L39L	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	582							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGCCCGCCCTCACGTGCATCA	0.622													19	70					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439658	145439658	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145439658C>T	uc003lnt.2	+	9	2023	c.1785C>T	c.(1783-1785)TCC>TCT	p.S595S	SH3RF2_uc011dbl.1_Silent_p.S595S|SH3RF2_uc011dbm.1_Silent_p.S80S|SH3RF2_uc003lnu.2_Silent_p.S86S|SH3RF2_uc011dbn.1_Silent_p.S86S|SH3RF2_uc011dbo.1_Silent_p.S52S	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	595							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGATCCACTCCGCGGCCAGCT	0.632													21	67					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145442113	145442113	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145442113C>T	uc003lnt.2	+	10	2277	c.2039C>T	c.(2038-2040)TCC>TTC	p.S680F	SH3RF2_uc011dbl.1_Missense_Mutation_p.S680F|SH3RF2_uc003lnu.2_Missense_Mutation_p.S171F|SH3RF2_uc011dbn.1_Missense_Mutation_p.S171F|SH3RF2_uc011dbo.1_Missense_Mutation_p.S137F	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	680							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAAGCAGCGTCCTTGGGCCCA	0.597													8	78					0	0	1	0	0
LARS	51520	broad.mit.edu	37	5	145537316	145537316	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145537316G>A	uc003lnx.1	-	9	1052	c.814C>T	c.(814-816)CTT>TTT	p.L272F	LARS_uc011dbq.1_Missense_Mutation_p.L226F|LARS_uc011dbr.1_Missense_Mutation_p.L218F|LARS_uc011dbs.1_Missense_Mutation_p.L245F	NM_020117	NP_064502	Q9P2J5	SYLC_HUMAN	leucyl-tRNA synthetase	272	Editing domain.				leucyl-tRNA aminoacylation	cytosol	ATP binding|leucine-tRNA ligase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Leucine(DB00149)	TATGGCTCAAGCACCTTCAAT	0.348													34	64					0	0	1	0	0
RBM27	54439	broad.mit.edu	37	5	145641171	145641171	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145641171C>T	uc003lnz.3	+	13	2158	c.1992C>T	c.(1990-1992)AAC>AAT	p.N664N	RBM27_uc003lny.2_Silent_p.N609N	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	664	RRM.				mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCTAAACAACCGATTCATTC	0.468													52	142					0	0	1	0	0
GPR151	134391	broad.mit.edu	37	5	145894431	145894431	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145894431C>T	uc003lod.1	-	1	1246	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K		NM_194251	NP_919227	Q8TDV0	GP151_HUMAN	G protein-coupled receptor 151	416	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTAACACCTTCCCCTGTCTCT	0.403													6	16					0	0	1	0	0
GPR151	134391	broad.mit.edu	37	5	145894735	145894735	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145894735C>T	uc003lod.1	-	1	942	c.942G>A	c.(940-942)AGG>AGA	p.R314R		NM_194251	NP_919227	Q8TDV0	GP151_HUMAN	G protein-coupled receptor 151	314	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCAAGCCTTCCCTGAACTCTT	0.468													10	45					0	0	1	0	0
GPR151	134391	broad.mit.edu	37	5	145895603	145895603	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145895603C>T	uc003lod.1	-	1	74	c.74G>A	c.(73-75)GGA>GAA	p.G25E		NM_194251	NP_919227	Q8TDV0	GP151_HUMAN	G protein-coupled receptor 151	25	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGGTACCCTCCGGCAAAGTG	0.542													14	150					0	0	1	0	0
PPP2R2B	5521	broad.mit.edu	37	5	145972622	145972622	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:145972622G>A	uc003loe.2	-	8	1489	c.964C>T	c.(964-966)CAT>TAT	p.H322Y	PPP2R2B_uc010jgm.2_Missense_Mutation_p.H311Y|PPP2R2B_uc003log.3_Missense_Mutation_p.H322Y|PPP2R2B_uc003lof.3_Missense_Mutation_p.H322Y|PPP2R2B_uc003loi.3_Missense_Mutation_p.H325Y|PPP2R2B_uc003loh.3_Missense_Mutation_p.H322Y|PPP2R2B_uc003loj.3_Missense_Mutation_p.H302Y|PPP2R2B_uc003lok.3_Missense_Mutation_p.H311Y|PPP2R2B_uc011dbu.1_Missense_Mutation_p.H328Y|PPP2R2B_uc011dbv.1_Missense_Mutation_p.H380Y	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	322					apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGTAGTCATGAACCTGGAGA	0.393													54	117					0	0	1	0	0
DPYSL3	1809	broad.mit.edu	37	5	146777300	146777300	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:146777300C>T	uc003lon.1	-	12	1500	c.1390G>A	c.(1390-1392)GGG>AGG	p.G464R	DPYSL3_uc003loo.2_Missense_Mutation_p.G578R	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	464					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGCCAGCCCCCTGGGTCACG	0.562													31	94					0	0	1	0	0
DPYSL3	1809	broad.mit.edu	37	5	146780333	146780333	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:146780333C>T	uc003lon.1	-	10	1142	c.1032G>A	c.(1030-1032)GGG>GGA	p.G344G	DPYSL3_uc003loo.2_Silent_p.G458G	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	344					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTTGTCCTTCCCAATTGCTT	0.557													20	55					0	0	1	0	0
DPYSL3	1809	broad.mit.edu	37	5	146785234	146785234	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:146785234G>A	uc003lon.1	-	8	860	c.750C>T	c.(748-750)CTC>CTT	p.L250L	DPYSL3_uc003loo.2_Silent_p.L364L	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	250					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGTGACGTAGAGAGGGCAAT	0.498													102	224					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	146997584	146997584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:146997584C>T	uc003loq.1	-	19	2618	c.2236G>A	c.(2236-2238)GAG>AAG	p.E746K	JAKMIP2_uc011dbx.1_Missense_Mutation_p.E704K|JAKMIP2_uc003lor.1_Missense_Mutation_p.E725K|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.E746K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	746	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCCTCAGCTCCTCTTGCTGT	0.433													24	83					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147016541	147016541	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147016541G>A	uc003loq.1	-	11	1983	c.1601C>T	c.(1600-1602)GCT>GTT	p.A534V	JAKMIP2_uc011dbx.1_Missense_Mutation_p.A492V|JAKMIP2_uc003lor.1_Missense_Mutation_p.A534V|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.A534V	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	534	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCTTTCTGAGCCAGAGTCGC	0.502													27	254					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147027949	147027949	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147027949C>T	uc003loq.1	-	5	1308	c.926G>A	c.(925-927)CGA>CAA	p.R309Q	JAKMIP2_uc011dbx.1_Missense_Mutation_p.R267Q|JAKMIP2_uc003lor.1_Missense_Mutation_p.R309Q|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.R309Q	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	309	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGTTCATTTCGTTCATCTCC	0.299													36	98					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147040970	147040970	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147040970C>T	uc003loq.1	-	3	550	c.168G>A	c.(166-168)AAG>AAA	p.K56K	JAKMIP2_uc011dbx.1_Silent_p.K14K|JAKMIP2_uc003lor.1_Silent_p.K56K|uc003lop.1_3'UTR|JAKMIP2_uc010jgo.1_Silent_p.K56K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	56	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACGAATCCTCTTCGCTTCTT	0.507													55	116					0	0	1	0	0
C5orf46	389336	broad.mit.edu	37	5	147281256	147281256	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147281256G>A	uc010jgp.2	-	2	188	c.151C>T	c.(151-153)CTC>TTC	p.L51F	C5orf46_uc003lou.2_Missense_Mutation_p.L51F|C5orf46_uc003lov.3_Missense_Mutation_p.L51F	NM_206966	NP_996849	Q6UWT4	CE046_HUMAN	hypothetical protein LOC389336 precursor	51						extracellular region					0						GTGCCCAGGAGGCTTAGGAAT	0.413													10	58					0	0	1	0	0
SPINK5	11005	broad.mit.edu	37	5	147481403	147481403	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147481403G>A	uc003lox.2	+	15	1435	c.1362G>A	c.(1360-1362)GAG>GAA	p.E454E	SPINK5_uc010jgs.1_Silent_p.E426E|SPINK5_uc010jgr.2_Silent_p.E435E|SPINK5_uc003low.2_Silent_p.E454E|SPINK5_uc003loy.2_Silent_p.E454E	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	454	Kazal-like 7.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCACCAGAGAGAATGACCCCA	0.493													31	87					0	0	1	0	0
SPINK5	11005	broad.mit.edu	37	5	147494021	147494021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147494021G>A	uc003lox.2	+	21	2057	c.1984G>A	c.(1984-1986)GGC>AGC	p.G662S	SPINK5_uc010jgs.1_Missense_Mutation_p.G634S|SPINK5_uc010jgr.2_Missense_Mutation_p.G643S|SPINK5_uc003low.2_Missense_Mutation_p.G662S|SPINK5_uc003loy.2_Missense_Mutation_p.G662S	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	662	Kazal-like 10.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAAGACCCATGGCAACAAGTG	0.458													31	48					0	0	1	0	0
SPINK5	11005	broad.mit.edu	37	5	147498554	147498554	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147498554G>A	uc003lox.2	+	24	2319	c.2246G>A	c.(2245-2247)AGA>AAA	p.R749K	SPINK5_uc010jgs.1_Missense_Mutation_p.R721K|SPINK5_uc010jgr.2_Missense_Mutation_p.R730K|SPINK5_uc003low.2_Missense_Mutation_p.R749K|SPINK5_uc003loy.2_Missense_Mutation_p.R749K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	749	Kazal-like 11.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAGGGAAAGAGAAGCAGAG	0.403													11	100					0	0	1	0	0
SPINK5	11005	broad.mit.edu	37	5	147504348	147504348	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147504348G>A	uc003lox.2	+	28	2760	c.2687G>A	c.(2686-2688)AGA>AAA	p.R896K	SPINK5_uc010jgr.2_Missense_Mutation_p.R877K|SPINK5_uc003low.2_Missense_Mutation_p.R896K|SPINK5_uc003loy.2_Missense_Mutation_p.R896K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	896	Kazal-like 13.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTAATGAAAGAAAAAAGAAA	0.303													12	27					0	0	1	0	0
SPINK13	153218	broad.mit.edu	37	5	147661689	147661689	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147661689C>T	uc003lpc.2	+	4	193	c.131C>T	c.(130-132)CCA>CTA	p.P44L	uc003lpb.1_Intron|SPINK13_uc010jgt.2_RNA	NM_001040129	NP_001035218	Q1W4C9	ISK13_HUMAN	serine PI Kazal type 5-like 3 precursor	44	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity				0						ATGTATATCCCACTGGACCCT	0.418													36	111					0	0	1	0	0
SPINK7	84651	broad.mit.edu	37	5	147693683	147693683	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147693683G>A	uc003lpd.2	+	3	165	c.108G>A	c.(106-108)AAG>AAA	p.K36K	uc003lpb.1_Intron	NM_032566	NP_115955	P58062	ISK7_HUMAN	serine peptidase inhibitor, Kazal type 7	36	Kazal-like.					extracellular region	protein binding|serine-type endopeptidase inhibitor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCATTTACAAGAAGTATCCAG	0.473													67	167					0	0	1	0	0
SPINK7	84651	broad.mit.edu	37	5	147693756	147693757	+	Missense_Mutation	DNP	GG	AA	AA	rs138587974		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147693756_147693757GG>AA	uc003lpd.2	+	3	238_239	c.181_182GG>AA	c.(181-183)GGG>AAG	p.G61K	uc003lpb.1_Intron	NM_032566	NP_115955	P58062	ISK7_HUMAN	serine peptidase inhibitor, Kazal type 7	61	Kazal-like.					extracellular region	protein binding|serine-type endopeptidase inhibitor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCACCTATGGGAATGAATGT	0.465													17	123					0	0	1	0	0
FBXO38	81545	broad.mit.edu	37	5	147803583	147803583	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147803583C>T	uc003lpf.1	+	13	1761	c.1641C>T	c.(1639-1641)ATC>ATT	p.I547I	FBXO38_uc003lpg.1_Silent_p.I547I|FBXO38_uc003lph.2_Silent_p.I547I	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	547						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAAGACATCGTCCAAGAAG	0.433													18	61					0	0	1	0	0
HTR4	3360	broad.mit.edu	37	5	147929808	147929808	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:147929808C>T	uc003lpn.2	-	3	208	c.44G>A	c.(43-45)GGG>GAG	p.G15E	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Missense_Mutation_p.G15E|HTR4_uc003lpj.1_Missense_Mutation_p.G15E|HTR4_uc003lpk.2_Missense_Mutation_p.G15E|HTR4_uc011dby.1_Missense_Mutation_p.G15E|HTR4_uc003lpl.2_Missense_Mutation_p.G15E|HTR4_uc003lpm.2_Missense_Mutation_p.G15E|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Missense_Mutation_p.G15E|SH3TC2_uc003lpp.1_RNA	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	15	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	CTCCACTGACCCGAAACCCTC	0.498													19	59					0	0	1	0	0
ADRB2	154	broad.mit.edu	37	5	148207537	148207537	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:148207537C>T	uc003lpr.1	+	1	1382	c.1143C>T	c.(1141-1143)CTC>CTT	p.L381L	SH3TC2_uc003lpp.1_Intron	NM_000024	NP_000015	P07550	ADRB2_HUMAN	adrenergic, beta-2-, receptor, surface	381	Cytoplasmic.				activation of transmembrane receptor protein tyrosine kinase activity|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|endosome to lysosome transport|positive regulation of MAPKKK cascade|receptor-mediated endocytosis	endosome|integral to plasma membrane|lysosome|receptor complex	beta2-adrenergic receptor activity|norepinephrine binding|potassium channel regulator activity|protein homodimerization activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Alprenolol(DB00866)|Arformoterol(DB01274)|Bambuterol(DB01408)|Bisoprolol(DB00612)|Bitolterol(DB00901)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Clenbuterol(DB01407)|Desipramine(DB01151)|Epinephrine(DB00668)|Fenoterol(DB01288)|Formoterol(DB00983)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Nadolol(DB01203)|Norepinephrine(DB00368)|Orciprenaline(DB00816)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Pirbuterol(DB01291)|Procaterol(DB01366)|Propranolol(DB00571)|Pseudoephedrine(DB00852)|Ritodrine(DB00867)|Salbutamol(DB01001)|Salmeterol(DB00938)|Terbutaline(DB00871)|Timolol(DB00373)	GTGAAGACCTCCCAGGCACGG	0.483													7	72					0	0	1	0	0
SH3TC2	79628	broad.mit.edu	37	5	148384332	148384333	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:148384332_148384333GG>AA	uc003lpu.2	-	17	3960_3961	c.3808_3809CC>TT	c.(3808-3810)CCC>TTC	p.P1270F	SH3TC2_uc003lpp.1_Intron|SH3TC2_uc010jgw.2_Missense_Mutation_p.P914F|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Missense_Mutation_p.P817F|SH3TC2_uc010jgx.2_Missense_Mutation_p.P1263F	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	1270							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCACCCGGAGGGCCTGCTGTGC	0.644													9	23					0	0	1	0	0
SH3TC2	79628	broad.mit.edu	37	5	148406911	148406911	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:148406911G>A	uc003lpu.2	-	11	2536	c.2384C>T	c.(2383-2385)TCC>TTC	p.S795F	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Missense_Mutation_p.S439F|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Missense_Mutation_p.S342F|SH3TC2_uc010jgx.2_Missense_Mutation_p.S788F|SH3TC2_uc003lpv.1_Missense_Mutation_p.S342F|SH3TC2_uc011dbz.1_Missense_Mutation_p.S680F	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	795							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACTCAAAGGATTCCTGCTC	0.567													11	89					0	0	1	0	0
ABLIM3	22885	broad.mit.edu	37	5	148627436	148627436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:148627436C>T	uc003lpy.2	+	18	1894	c.1643C>T	c.(1642-1644)TCC>TTC	p.S548F	ABLIM3_uc003lpz.1_Missense_Mutation_p.S548F|ABLIM3_uc003lqa.1_Missense_Mutation_p.S445F|ABLIM3_uc003lqb.2_Missense_Mutation_p.S437F|ABLIM3_uc003lqc.1_Missense_Mutation_p.S515F|ABLIM3_uc003lqd.1_Missense_Mutation_p.S453F|ABLIM3_uc003lqf.2_Missense_Mutation_p.S437F|ABLIM3_uc003lqe.1_Missense_Mutation_p.S437F	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	548					axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCGGAGCTCCACCAGCAGC	0.602													6	31					0	0	1	0	0
AFAP1L1	134265	broad.mit.edu	37	5	148715266	148715267	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:148715266_148715267GG>CA	uc003lqh.2	+	18	2395_2396	c.2264_2265GG>CA	c.(2263-2265)AGG>ACA	p.R755T	AFAP1L1_uc010jgy.2_Intron|AFAP1L1_uc003lqi.1_Missense_Mutation_p.R370T	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	755							protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACCAAGGAAGGGTGCTACAGA	0.485													39	112					0	0	1	0	0
PCYOX1L	78991	broad.mit.edu	37	5	148747925	148747925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:148747925C>T	uc003lqk.2	+	6	1255	c.1193C>T	c.(1192-1194)TCC>TTC	p.S398F	PCYOX1L_uc003lql.2_Missense_Mutation_p.S381F|PCYOX1L_uc010jgz.2_Missense_Mutation_p.S322F|PCYOX1L_uc003lqm.2_Missense_Mutation_p.S280F|PCYOX1L_uc003lqn.2_Missense_Mutation_p.S308F	NM_024028	NP_076933	Q8NBM8	PCYXL_HUMAN	prenylcysteine oxidase 1 like precursor	398					prenylcysteine catabolic process	extracellular region	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGAGTCCAGTCCCCCAAGCCC	0.597											OREG0016912	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	156					0	0	1	0	0
PCYOX1L	78991	broad.mit.edu	37	5	148748050	148748050	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:148748050C>T	uc003lqk.2	+	6	1380	c.1318C>T	c.(1318-1320)CAT>TAT	p.H440Y	PCYOX1L_uc003lql.2_Missense_Mutation_p.H423Y|PCYOX1L_uc010jgz.2_Missense_Mutation_p.H364Y|PCYOX1L_uc003lqm.2_Missense_Mutation_p.H322Y|PCYOX1L_uc003lqn.2_Missense_Mutation_p.H350Y	NM_024028	NP_076933	Q8NBM8	PCYXL_HUMAN	prenylcysteine oxidase 1 like precursor	440					prenylcysteine catabolic process	extracellular region	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTTGCACTCCATGACCAGCT	0.607													29	78					0	0	1	0	0
IL17B	27190	broad.mit.edu	37	5	148756469	148756469	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:148756469C>T	uc003lqo.2	-	2	191	c.141G>A	c.(139-141)CTG>CTA	p.L47L		NM_014443	NP_055258	Q9UHF5	IL17B_HUMAN	interleukin 17B precursor	47					cell-cell signaling|immune response|inflammatory response	extracellular space	cytokine activity|signal transducer activity			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACACCAGGTCCAGTGGCACCT	0.652													30	81					0	0	1	0	0
PDE6A	5145	broad.mit.edu	37	5	149263071	149263071	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149263071C>T	uc003lrg.3	-	17	2176	c.2056G>A	c.(2056-2058)GAT>AAT	p.D686N		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	686					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TTAGACTGATCCACGATCTTT	0.443													5	55					0	0	1	0	0
PDE6A	5145	broad.mit.edu	37	5	149263075	149263075	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149263075G>A	uc003lrg.3	-	17	2172	c.2052C>T	c.(2050-2052)ATC>ATT	p.I684I		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	684					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			ACTGATCCACGATCTTTTGGA	0.448													17	41					0	0	1	0	0
PDE6A	5145	broad.mit.edu	37	5	149274851	149274851	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149274851G>A	uc003lrg.3	-	13	1743	c.1623C>T	c.(1621-1623)GCC>GCT	p.A541A		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	541					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			ACCGCACCAGGGCCTGTGAAC	0.542													23	67					0	0	1	0	0
PDE6A	5145	broad.mit.edu	37	5	149323835	149323835	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149323835G>T	uc003lrg.3	-	1	522	c.402C>A	c.(400-402)TTC>TTA	p.F134L		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	134	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TGTCCAAAGGGAAGACGATCT	0.567													37	109					6.53348e-20	6.56874e-20	1	1	0
PDE6A	5145	broad.mit.edu	37	5	149323976	149323976	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149323976G>A	uc003lrg.3	-	1	381	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	87	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CCTGCAGGAGGAAGCACAGCT	0.517													6	63					0	0	1	0	0
SLC26A2	1836	broad.mit.edu	37	5	149360587	149360587	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149360587C>T	uc003lrh.2	+	3	1699	c.1431C>T	c.(1429-1431)TCC>TCT	p.S477S		NM_000112	NP_000103	P50443	S26A2_HUMAN	solute carrier family 26 member 2	477	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	secondary active sulfate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TGTTCTATTCCCTTCAAAAAA	0.423													5	82					0	0	1	0	0
SLC26A2	1836	broad.mit.edu	37	5	149361299	149361299	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149361299G>A	uc003lrh.2	+	3	2411	c.2143G>A	c.(2143-2145)GCG>ACG	p.A715T		NM_000112	NP_000103	P50443	S26A2_HUMAN	solute carrier family 26 member 2	715	Cytoplasmic (Potential).|STAS.		A -> V (in AO2).			integral to plasma membrane|membrane fraction	secondary active sulfate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TGTGTATGAAGCGATGGCTTT	0.403													19	94					0	0	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149449834	149449834	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149449834G>A	uc003lrl.2	-	8	1425	c.1230C>T	c.(1228-1230)TTC>TTT	p.F410F	CSF1R_uc011dcd.1_Silent_p.F262F|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.F410F	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	410	Ig-like C2-type 5.|Extracellular (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	AGCCGTTGATGAATGTCCATA	0.572													17	48					0	0	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149453010	149453010	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149453010C>T	uc003lrl.2	-	6	1131	c.936G>A	c.(934-936)GAG>GAA	p.E312E	CSF1R_uc011dcd.1_Silent_p.E164E|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.E312E|CSF1R_uc011dce.1_Intron	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	312	Extracellular (Potential).|Ig-like C2-type 4.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	CCACGGTCACCTCCTGGATGA	0.532													44	116					0	0	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149456979	149456979	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149456979G>A	uc003lrl.2	-	5	944	c.749C>T	c.(748-750)TCT>TTT	p.S250F	CSF1R_uc011dcd.1_Missense_Mutation_p.S102F|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.S250F|CSF1R_uc011dce.1_Missense_Mutation_p.S250F|CSF1R_uc011dcf.1_Missense_Mutation_p.S250F	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	250	Extracellular (Potential).|Ig-like C2-type 3.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	ATGAAAGTCAGATTGTTGAGG	0.373													46	130					0	0	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149460492	149460492	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149460492C>T	uc003lrl.2	-	2	340	c.145G>A	c.(145-147)GAA>AAA	p.E49K	CSF1R_uc011dcd.1_5'UTR|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.E49K|CSF1R_uc011dce.1_Missense_Mutation_p.E49K|CSF1R_uc011dcf.1_Missense_Mutation_p.E49K	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	49	Ig-like C2-type 1.|Extracellular (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	CCATCCCATTCCACGCTGCCA	0.587													13	24					0	0	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149460541	149460541	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149460541C>T	uc003lrl.2	-	2	291	c.96G>A	c.(94-96)GTG>GTA	p.V32V	CSF1R_uc011dcd.1_5'UTR|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.V32V|CSF1R_uc011dce.1_Silent_p.V32V|CSF1R_uc011dcf.1_Silent_p.V32V	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	32	Ig-like C2-type 1.|Extracellular (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity	p.V32G(1)		haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	CTCCTGGCTTCACGACCAGCT	0.602													10	13					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149497196	149497196	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149497196G>A	uc003lro.2	-	22	3591	c.3122C>T	c.(3121-3123)TCC>TTC	p.S1041F	PDGFRB_uc010jhd.2_Missense_Mutation_p.S880F	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	1041	Cytoplasmic (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	TAGGCTGGGGGAACCCTCCAG	0.522			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								18	55					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149499582	149499582	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149499582G>A	uc003lro.2	-	19	3160	c.2691C>T	c.(2689-2691)TTC>TTT	p.F897F	PDGFRB_uc010jhd.2_Silent_p.F736F	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	897	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	TACCCAAGGTGAAGATCTCCC	0.517			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								12	75					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149500802	149500802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149500802C>T	uc003lro.2	-	17	2897	c.2428G>A	c.(2428-2430)GTG>ATG	p.V810M	PDGFRB_uc010jhd.2_Missense_Mutation_p.V649M	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	810	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CCATTGGCCACCTGGTAGCTG	0.597			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								16	49					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149502729	149502729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149502729C>T	uc003lro.2	-	15	2528	c.2059G>A	c.(2059-2061)GGA>AGA	p.G687R	PDGFRB_uc010jhd.2_Missense_Mutation_p.G526R	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	687	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	ACCAGGTCTCCGTAGCGGCAG	0.607			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								21	56					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149506170	149506170	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149506170G>A	uc003lro.2	-	11	2056	c.1587C>T	c.(1585-1587)CCC>CCT	p.P529P	PDGFRB_uc010jhd.2_Silent_p.P368P	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	529	Extracellular (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CCACCTTAAAGGGCAAGGCTG	0.562			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								5	38					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149509438	149509438	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149509438C>T	uc003lro.2	-	10	1930	c.1461G>A	c.(1459-1461)CAG>CAA	p.Q487Q	PDGFRB_uc010jhd.2_Silent_p.Q326Q	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	487	Extracellular (Potential).|Ig-like C2-type 5.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CCTCAAACTCCTGCTCCTCCT	0.647			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML						OREG0016927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	42	67					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149513291	149513291	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149513291G>A	uc003lro.2	-	6	1261	c.792C>T	c.(790-792)TTC>TTT	p.F264F	PDGFRB_uc010jhd.2_Silent_p.F103F|PDGFRB_uc011dcg.1_Silent_p.F264F	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	264	Extracellular (Potential).|Ig-like C2-type 3.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	TATCCAAGAGGAAGTCAGTCA	0.602			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								42	112					0	0	1	0	0
CDX1	1044	broad.mit.edu	37	5	149546471	149546471	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149546471C>T	uc003lrq.2	+	1	128	c.32C>T	c.(31-33)TCG>TTG	p.S11L		NM_001804	NP_001795	P47902	CDX1_HUMAN	caudal type homeobox 1	11						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GACAAGGATTCGCCCGTGTAC	0.617													4	11					0	0	1	0	0
CDX1	1044	broad.mit.edu	37	5	149563070	149563070	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149563070G>A	uc003lrq.2	+	3	721	c.625G>A	c.(625-627)GAG>AAG	p.E209K		NM_001804	NP_001795	P47902	CDX1_HUMAN	caudal type homeobox 1	209	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCGGGCAAAGGAGCGCAAAGT	0.612													15	34					0	0	1	0	0
SLC6A7	6534	broad.mit.edu	37	5	149578866	149578866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149578866C>T	uc003lrr.2	+	5	1031	c.660C>T	c.(658-660)TGC>TGT	p.C220C		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	220	Helical; Name=4; (Potential).					integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	TCTGCCTCTGCCTGCTGCTGG	0.478													17	68					0	0	1	0	0
CAMK2A	815	broad.mit.edu	37	5	149627351	149627351	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149627351G>A	uc003lru.2	-	12	1142	c.927C>T	c.(925-927)GCC>GCT	p.A309A	CAMK2A_uc003lrs.2_5'Flank|CAMK2A_uc003lrt.2_Silent_p.A309A|CAMK2A_uc010jhe.2_Silent_p.A289A	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	309					interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGTTCCTGGTGGCCAGCATCG	0.617													4	12					0	0	1	0	0
CAMK2A	815	broad.mit.edu	37	5	149652720	149652720	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149652720C>T	uc003lru.2	-	2	280	c.65G>A	c.(64-66)GGA>GAA	p.G22E	CAMK2A_uc003lrt.2_Missense_Mutation_p.G22E|CAMK2A_uc010jhe.2_Missense_Mutation_p.G22E	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	22	Protein kinase.|ATP (By similarity).				interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CGAGAAGGCTCCCCTAGGAGG	0.567													14	69					0	0	1	0	0
ARSI	340075	broad.mit.edu	37	5	149678054	149678054	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149678054C>T	uc003lrv.2	-	2	1022	c.433G>A	c.(433-435)GTG>ATG	p.V145M		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	145						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CACTTGCCCACCATATGGGTG	0.612													16	37					0	0	1	0	0
TCOF1	6949	broad.mit.edu	37	5	149753822	149753822	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149753822C>T	uc003lry.2	+	8	1064	c.956C>T	c.(955-957)CCC>CTC	p.P319L	TCOF1_uc003lrw.2_Missense_Mutation_p.P319L|TCOF1_uc011dch.1_Missense_Mutation_p.P319L|TCOF1_uc003lrz.2_Missense_Mutation_p.P319L|TCOF1_uc003lrx.2_Missense_Mutation_p.P242L|TCOF1_uc003lsa.2_Missense_Mutation_p.P242L|TCOF1_uc011dci.1_5'Flank	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	319					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACCCCAGCACCCCCTGGGAAG	0.597													4	13					0	0	1	0	0
CD74	972	broad.mit.edu	37	5	149792299	149792299	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:149792299C>T	uc003lsc.2	-	1	25	c.14G>A	c.(13-15)AGA>AAA	p.R5K	CD74_uc003lse.2_Missense_Mutation_p.R5K|CD74_uc003lsd.2_Missense_Mutation_p.R5K|CD74_uc003lsf.1_Missense_Mutation_p.R5K	NM_001025159	NP_001020330	P04233	HG2A_HUMAN	CD74 antigen isoform a	5	Cytoplasmic (Potential).				antigen processing and presentation of endogenous antigen|cell proliferation|immunoglobulin mediated immune response|intracellular protein transport|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of peptide secretion|positive regulation of B cell proliferation|positive regulation of chemokine (C-X-C motif) ligand 2 production|positive regulation of cytokine-mediated signaling pathway|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of macrophage cytokine production|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|prostaglandin biosynthetic process|protein complex assembly|regulation of macrophage activation	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|lysosome|receptor complex	beta-amyloid binding|cytokine receptor activity|identical protein binding|MHC class II protein binding			breast(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCTCCTGCTTCTCCTCCTGTG	0.607			T	ROS1	NSCLC								97	222					0	0	1	0	0
SYNPO	11346	broad.mit.edu	37	5	150029801	150029801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150029801C>T	uc003lsn.2	+	3	3070	c.2696C>T	c.(2695-2697)TCT>TTT	p.S899F	SYNPO_uc003lso.3_Missense_Mutation_p.S655F|SYNPO_uc003lsp.2_Missense_Mutation_p.S655F	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	899	Pro-rich.				positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGGCGTGGTCTCCCCGAGCC	0.667													37	124					0	0	1	0	0
MYOZ3	91977	broad.mit.edu	37	5	150051192	150051192	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150051192G>A	uc003lss.2	+	4	837	c.250G>A	c.(250-252)GGA>AGA	p.G84R	MYOZ3_uc003lsr.2_Missense_Mutation_p.G84R	NM_001122853	NP_001116325	Q8TDC0	MYOZ3_HUMAN	myozenin 3	84	Binding to FLNC.					sarcomere	protein binding			skin(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAAGGTGACTGGAACAGCGGA	0.682													13	121					0	0	1	0	0
ZNF300	91975	broad.mit.edu	37	5	150276484	150276484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150276484G>A	uc003lsy.1	-	6	584	c.317C>T	c.(316-318)TCC>TTC	p.S106F	IRGM_uc011dcl.1_Intron	NM_052860	NP_443092	Q96RE9	ZN300_HUMAN	zinc finger protein 300	106					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.131)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATGATGGAAGGAAACTGTCCC	0.388													17	83					0	0	1	0	0
GPX3	2878	broad.mit.edu	37	5	150404937	150404937	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150404937G>A	uc011dcm.1	+	2	341	c.124G>A	c.(124-126)GAG>AAG	p.E42K	GPX3_uc003ltc.2_RNA|GPX3_uc003ltd.2_RNA	NM_002084	NP_002075	P22352	GPX3_HUMAN	glutathione peroxidase 3 precursor	42					hydrogen peroxide catabolic process|protein homotetramerization|response to lipid hydroperoxide	extracellular space	glutathione peroxidase activity|selenium binding|transcription factor binding				0		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glutathione(DB00143)	CACCATTTACGAGTACGGAGC	0.428													26	74					0	0	1	0	0
GPX3	2878	broad.mit.edu	37	5	150407532	150407532	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150407532G>A	uc011dcm.1	+	6	739	c.522G>A	c.(520-522)ATG>ATA	p.M174I	GPX3_uc003ltc.2_RNA|GPX3_uc003ltd.2_RNA	NM_002084	NP_002075	P22352	GPX3_HUMAN	glutathione peroxidase 3 precursor	174					hydrogen peroxide catabolic process|protein homotetramerization|response to lipid hydroperoxide	extracellular space	glutathione peroxidase activity|selenium binding|transcription factor binding				0		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glutathione(DB00143)	GGGAACCCATGAAGGTTCACG	0.567													19	60					0	0	1	0	0
TNIP1	10318	broad.mit.edu	37	5	150436378	150436378	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150436378G>A	uc003ltf.2	-	6	1165	c.576C>T	c.(574-576)AAC>AAT	p.N192N	TNIP1_uc010jhl.2_RNA|TNIP1_uc010jhm.2_Silent_p.N192N|TNIP1_uc010jhn.2_Silent_p.N192N|TNIP1_uc011dco.1_Silent_p.N192N|TNIP1_uc003lth.2_RNA|TNIP1_uc003lti.2_Silent_p.N192N|TNIP1_uc003ltg.2_Silent_p.N139N|TNIP1_uc003ltj.2_Silent_p.N192N|TNIP1_uc010jho.1_RNA|TNIP1_uc010jhq.1_Silent_p.N139N|TNIP1_uc010jhp.1_Silent_p.N139N|TNIP1_uc010jhr.1_Silent_p.N192N|TNIP1_uc003ltk.2_Silent_p.N192N	NM_006058	NP_006049	Q15025	TNIP1_HUMAN	TNFAIP3 interacting protein 1	192	Interacts with Nef.				defense response|glycoprotein biosynthetic process|negative regulation of viral genome replication|translation	cytoplasm|nucleus	protein binding			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.0911)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATGCCAGTCGGTTGAACTCCA	0.667													6	48					0	0	1	0	0
CCDC69	26112	broad.mit.edu	37	5	150578630	150578630	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150578630C>T	uc003ltq.2	-	4	370	c.247G>A	c.(247-249)GAG>AAG	p.E83K	CCDC69_uc010jhu.2_5'UTR|CCDC69_uc011dcq.1_RNA	NM_015621	NP_056436	A6NI79	CCD69_HUMAN	coiled-coil domain containing 69	83	Potential.									ovary(2)	2		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGCTCTAGCTCCCTTTCCTTC	0.547													45	127					0	0	1	0	0
GM2A	2760	broad.mit.edu	37	5	150646957	150646957	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150646957G>A	uc003ltr.3	+	4	692	c.527G>A	c.(526-528)AGC>AAC	p.S176N	GM2A_uc011dcs.1_RNA|GM2A_uc011dcr.1_Intron|GM2A_uc003ltu.1_5'Flank	NM_000405	NP_000396	P17900	SAP3_HUMAN	GM2 ganglioside activator precursor	176						lysosome|nucleolus	sphingolipid activator protein activity				0		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTCCTGAGCAGCAGTGGGAAG	0.577													12	51					0	0	1	0	0
SLC36A3	285641	broad.mit.edu	37	5	150666980	150666980	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150666980C>T	uc003ltw.2	-	6	954	c.535G>A	c.(535-537)GAG>AAG	p.E179K	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Missense_Mutation_p.E164K|SLC36A3_uc003ltx.2_Missense_Mutation_p.E220K	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	179	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTCAGAATCTCCCTGGGCTGG	0.443													7	67					0	0	1	0	0
SLC36A2	153201	broad.mit.edu	37	5	150696629	150696629	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150696629G>A	uc003lty.2	-	10	1331	c.1201C>T	c.(1201-1203)CCC>TCC	p.P401S	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Missense_Mutation_p.P203S	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	401	Extracellular (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCCAGGCGGGGGATGAGGATG	0.582													5	23					0	0	1	0	0
SLC36A2	153201	broad.mit.edu	37	5	150714977	150714977	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150714977C>T	uc003lty.2	-	6	787	c.657G>A	c.(655-657)CGG>CGA	p.R219R	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Silent_p.R21R|SLC36A2_uc010jhv.2_Silent_p.R219R	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	219	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCCTGAGGTTCCGGATGAGGA	0.537													14	80					0	0	1	0	0
SLC36A2	153201	broad.mit.edu	37	5	150723772	150723772	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150723772C>T	uc003lty.2	-	2	351	c.221G>A	c.(220-222)GGA>GAA	p.G74E	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_5'UTR|SLC36A2_uc010jhv.2_Missense_Mutation_p.G74E|SLC36A2_uc011dct.1_Missense_Mutation_p.G74E	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	74	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAGGGGTAGTCCCAGGATCCC	0.552													6	58					0	0	1	0	0
SLC36A1	206358	broad.mit.edu	37	5	150856304	150856304	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150856304C>T	uc003luc.2	+	9	1193	c.976C>T	c.(976-978)CTG>TTG	p.L326L	GM2A_uc011dcs.1_Intron|SLC36A1_uc003lub.1_Silent_p.L326L|SLC36A1_uc010jhw.1_Silent_p.L326L	NM_078483	NP_510968	Q7Z2H8	S36A1_HUMAN	solute carrier family 36 member 1	326	Extracellular (Potential).				cellular nitrogen compound metabolic process|ion transport	endoplasmic reticulum|integral to membrane|lysosomal membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			skin(1)	1		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)|all_neural(839;0.138)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glycine(DB00145)|L-Alanine(DB00160)	AACCCTCAACCTGCCCAACTG	0.498													15	42					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150886928	150886928	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150886928C>T	uc003lue.3	-	22	12317	c.12304G>A	c.(12304-12306)GAG>AAG	p.E4102K	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.E709K	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	4102	Cytoplasmic (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGGTTGAGCTCGATGGCAGGC	0.567													20	89					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150932882	150932882	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150932882G>A	uc003lue.3	-	5	4025	c.4012C>T	c.(4012-4014)CCT>TCT	p.P1338S	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1338	Extracellular (Potential).|Cadherin 11.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CGGGGCCAAGGGATCCACTCA	0.567													14	50					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150948210	150948210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:150948210G>A	uc003lue.3	-	1	296	c.283C>T	c.(283-285)CTA>TTA	p.L95L	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Silent_p.L95L	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	95	Extracellular (Potential).|Cadherin 1.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTTATTCTTAGGAAGCAGAAG	0.512													41	322					0	0	1	0	0
GLRA1	2741	broad.mit.edu	37	5	151230975	151230975	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:151230975G>A	uc003lut.2	-	7	1175	c.888C>T	c.(886-888)TCC>TCT	p.S296S	GLRA1_uc003lur.2_Silent_p.S296S|GLRA1_uc003lus.2_Silent_p.S213S	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	296	Helical; (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTCGAGAGCCGGAGCTCTGGG	0.542													21	44					0	0	1	0	0
GLRA1	2741	broad.mit.edu	37	5	151304099	151304099	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:151304099G>A	uc003lut.2	-	1	299	c.12C>T	c.(10-12)TTC>TTT	p.F4F	GLRA1_uc003lur.2_Silent_p.F4F|GLRA1_uc003lus.2_5'UTR	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	4					muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GAAGAGTATTGAAGCTGTACA	0.428													34	139					0	0	1	0	0
NMUR2	56923	broad.mit.edu	37	5	151771802	151771802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:151771802C>T	uc003luv.2	-	4	1364	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	400	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			GACATCTGTTCACTAGAGAGG	0.458													43	107					0	0	1	0	0
NMUR2	56923	broad.mit.edu	37	5	151784500	151784500	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:151784500C>T	uc003luv.2	-	1	341	c.175G>A	c.(175-177)GGG>AGG	p.G59R		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	59	Helical; Name=1; (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			CCAATGACCCCCACCACAAAA	0.577													22	66					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153026600	153026600	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153026600G>A	uc003lva.3	+	3	698	c.333G>A	c.(331-333)CCG>CCA	p.P111P	GRIA1_uc003luy.3_Silent_p.P111P|GRIA1_uc003luz.3_Silent_p.P16P|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Intron|GRIA1_uc011dcx.1_Silent_p.P42P|GRIA1_uc011dcy.1_Silent_p.P121P|GRIA1_uc011dcz.1_Silent_p.P121P|GRIA1_uc010jia.1_Silent_p.P91P	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	111	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TCATTACGCCGAGCTTTCCCG	0.493													47	116					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153026646	153026646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153026646C>T	uc003lva.3	+	3	744	c.379C>T	c.(379-381)CCT>TCT	p.P127S	GRIA1_uc003luy.3_Missense_Mutation_p.P127S|GRIA1_uc003luz.3_Missense_Mutation_p.P32S|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Intron|GRIA1_uc011dcx.1_Missense_Mutation_p.P58S|GRIA1_uc011dcy.1_Missense_Mutation_p.P137S|GRIA1_uc011dcz.1_Missense_Mutation_p.P137S|GRIA1_uc010jia.1_Missense_Mutation_p.P107S	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	127	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TCAGCTGCGCCCTGAACTGCA	0.512													20	139					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153030042	153030042	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153030042G>A	uc003lva.3	+	4	978	c.613G>A	c.(613-615)GAA>AAA	p.E205K	GRIA1_uc003luy.3_Missense_Mutation_p.E205K|GRIA1_uc003luz.3_Missense_Mutation_p.E110K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.E125K|GRIA1_uc011dcx.1_Missense_Mutation_p.E136K|GRIA1_uc011dcy.1_Missense_Mutation_p.E215K|GRIA1_uc011dcz.1_Missense_Mutation_p.E215K|GRIA1_uc010jia.1_Missense_Mutation_p.E185K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	205	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGTGGACTGTGAATCAGAACG	0.532													17	47					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153054170	153054170	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153054170G>A	uc003lva.3	+	6	1175	c.810G>A	c.(808-810)TGG>TGA	p.W270*	GRIA1_uc003luy.3_Nonsense_Mutation_p.W270*|GRIA1_uc003luz.3_Nonsense_Mutation_p.W175*|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Nonsense_Mutation_p.W190*|GRIA1_uc011dcx.1_Nonsense_Mutation_p.W201*|GRIA1_uc011dcy.1_Nonsense_Mutation_p.W280*|GRIA1_uc011dcz.1_Nonsense_Mutation_p.W280*|GRIA1_uc010jia.1_Nonsense_Mutation_p.W250*	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	270	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGCAGCAGTGGAAGAATAGTG	0.532													43	97					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153056708	153056708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153056708G>A	uc003lva.3	+	7	1381	c.1016G>A	c.(1015-1017)AGA>AAA	p.R339K	GRIA1_uc003luy.3_Missense_Mutation_p.R339K|GRIA1_uc003luz.3_Missense_Mutation_p.R244K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.R259K|GRIA1_uc011dcx.1_Missense_Mutation_p.R270K|GRIA1_uc011dcy.1_Missense_Mutation_p.R349K|GRIA1_uc011dcz.1_Missense_Mutation_p.R349K|GRIA1_uc010jia.1_Missense_Mutation_p.R319K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	339	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GACATCCAGAGAGCTCTGCAG	0.517													10	36					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153085278	153085278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153085278C>T	uc003lva.3	+	11	1839	c.1474C>T	c.(1474-1476)CCC>TCC	p.P492S	GRIA1_uc003luy.3_Missense_Mutation_p.P492S|GRIA1_uc003luz.3_Missense_Mutation_p.P397S|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.P412S|GRIA1_uc011dcx.1_Missense_Mutation_p.P423S|GRIA1_uc011dcy.1_Missense_Mutation_p.P502S|GRIA1_uc011dcz.1_Missense_Mutation_p.P502S|GRIA1_uc010jia.1_Missense_Mutation_p.P472S	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	492	Glutamate binding (By similarity).|Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGCTGTGGCTCCCTTAACTAT	0.358													11	35					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153149829	153149829	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153149829G>A	uc003lva.3	+	13	2489	c.2124G>A	c.(2122-2124)AGG>AGA	p.R708R	GRIA1_uc003luy.3_Silent_p.R708R|GRIA1_uc003luz.3_Silent_p.R613R|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.R628R|GRIA1_uc011dcx.1_Silent_p.R639R|GRIA1_uc011dcy.1_Silent_p.R718R|GRIA1_uc011dcz.1_Silent_p.R718R	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	708	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TTCGAGTGAGGAAATCCAAAG	0.483													22	59					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153149857	153149857	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153149857C>T	uc003lva.3	+	13	2517	c.2152C>T	c.(2152-2154)CTG>TTG	p.L718L	GRIA1_uc003luy.3_Silent_p.L718L|GRIA1_uc003luz.3_Silent_p.L623L|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.L638L|GRIA1_uc011dcx.1_Silent_p.L649L|GRIA1_uc011dcy.1_Silent_p.L728L|GRIA1_uc011dcz.1_Silent_p.L728L	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	718	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGCCTACCTCCTGGAGTCCAC	0.498													16	46					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153149867	153149867	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153149867C>T	uc003lva.3	+	13	2527	c.2162C>T	c.(2161-2163)ACC>ATC	p.T721I	GRIA1_uc003luy.3_Missense_Mutation_p.T721I|GRIA1_uc003luz.3_Missense_Mutation_p.T626I|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.T641I|GRIA1_uc011dcx.1_Missense_Mutation_p.T652I|GRIA1_uc011dcy.1_Missense_Mutation_p.T731I|GRIA1_uc011dcz.1_Missense_Mutation_p.T731I	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	721	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTGGAGTCCACCATGAATGAG	0.502													15	47					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153190713	153190713	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153190713C>T	uc003lva.3	+	16	3014	c.2649C>T	c.(2647-2649)TTC>TTT	p.F883F	GRIA1_uc003luy.3_Silent_p.F883F|GRIA1_uc003luz.3_Silent_p.F788F|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.F803F|GRIA1_uc011dcx.1_Silent_p.F814F|GRIA1_uc011dcy.1_Silent_p.F893F|GRIA1_uc011dcz.1_Silent_p.F893F	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	883	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GCCATGACTTCCCCAAGTCCA	0.607													39	32					0	0	1	0	0
GALNT10	55568	broad.mit.edu	37	5	153765949	153765949	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:153765949T>C	uc003lvh.2	+	7	1147	c.1015T>C	c.(1015-1017)TTG>CTG	p.L339L	GALNT10_uc003lvg.1_Silent_p.L339L|GALNT10_uc010jic.2_RNA|GALNT10_uc010jid.2_Silent_p.L180L	NM_198321	NP_938080	Q86SR1	GLT10_HUMAN	GalNAc transferase 10 isoform a	339	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)|all_hematologic(541;0.21)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			TGACCCAGGCTTGGAGATCTG	0.592													39	87					0	0	1	0	0
LARP1	23367	broad.mit.edu	37	5	154183798	154183798	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154183798C>T	uc003lvp.2	+	14	2906	c.2477C>T	c.(2476-2478)CCA>CTA	p.P826L	LARP1_uc003lvo.2_Missense_Mutation_p.P749L	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	826							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AGTTCAAACCCACCCTTGGAG	0.532													42	117					0	0	1	0	0
GEMIN5	25929	broad.mit.edu	37	5	154271117	154271117	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154271117G>A	uc003lvx.3	-	26	4029	c.3946C>T	c.(3946-3948)CAG>TAG	p.Q1316*	GEMIN5_uc011ddk.1_Nonsense_Mutation_p.Q1315*	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1316					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TCTAACTGCTGGCTTGGCTCA	0.517													56	85					0	0	1	0	0
GEMIN5	25929	broad.mit.edu	37	5	154284151	154284151	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154284151G>A	uc003lvx.3	-	18	2631	c.2548C>T	c.(2548-2550)CCC>TCC	p.P850S	GEMIN5_uc011ddk.1_Missense_Mutation_p.P849S	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	850					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GTACTCAGGGGAAGCAAGGAA	0.403													34	81					0	0	1	0	0
GEMIN5	25929	broad.mit.edu	37	5	154284938	154284938	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154284938G>A	uc003lvx.3	-	17	2577	c.2494C>T	c.(2494-2496)CCA>TCA	p.P832S	GEMIN5_uc011ddk.1_Missense_Mutation_p.P831S	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	832					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TTCTCTTTTGGTGGCTCCTTT	0.338													24	85					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154394039	154394039	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154394039C>T	uc010jih.1	+	1	780	c.620C>T	c.(619-621)TCC>TTC	p.S207F		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	207	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GCTATGAACTCCCAGTCGTCC	0.468													17	146					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154394955	154394955	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154394955C>T	uc010jih.1	+	1	1696	c.1536C>T	c.(1534-1536)ACC>ACT	p.T512T		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	512	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ACGCTTTTACCACTCAGCATG	0.488													30	78					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154395381	154395381	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154395381G>A	uc010jih.1	+	1	2122	c.1962G>A	c.(1960-1962)ATG>ATA	p.M654I		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	654	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGCGTCAAATGAAAGAGGATG	0.408													39	147					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154395491	154395491	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154395491G>A	uc010jih.1	+	1	2232	c.2072G>A	c.(2071-2073)AGA>AAA	p.R691K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	691	Interaction with PRC1 (By similarity).|Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AAACTTGAAAGAAACTTCCAG	0.443													45	93					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154395724	154395724	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154395724G>A	uc010jih.1	+	1	2465	c.2305G>A	c.(2305-2307)GAA>AAA	p.E769K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	769	Interaction with PRC1 (By similarity).|Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGACCTCCTTGAAGACAGAAA	0.453													19	44					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154396858	154396858	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154396858C>T	uc010jih.1	+	1	3599	c.3439C>T	c.(3439-3441)CCT>TCT	p.P1147S		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	1147	Interaction with PRC1 (By similarity).|Globular (By similarity).				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ACTGGAGGATCCTACCGAGGT	0.542													38	62					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154396866	154396866	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:154396866G>A	uc010jih.1	+	1	3607	c.3447G>A	c.(3445-3447)GAG>GAA	p.E1149E		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	1149	Interaction with PRC1 (By similarity).|Globular (By similarity).				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ATCCTACCGAGGTGACCCCAG	0.527													35	59					0	0	1	0	0
SGCD	6444	broad.mit.edu	37	5	155771593	155771593	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:155771593G>A	uc003lwd.3	+	2	571	c.95G>A	c.(94-96)CGA>CAA	p.R32Q	SGCD_uc003lwa.1_Missense_Mutation_p.R33Q|SGCD_uc003lwb.2_Missense_Mutation_p.R33Q|SGCD_uc003lwc.3_Missense_Mutation_p.R33Q	NM_001128209	NP_001121681	Q92629	SGCD_HUMAN	delta-sarcoglycan isoform 3	32	Cytoplasmic (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0	Renal(175;0.00488)	Medulloblastoma(196;0.0378)|all_neural(177;0.106)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGGCGGAAACGATGCCTGTAT	0.483													9	81					0	0	1	0	0
PPP1R2P3	153743	broad.mit.edu	37	5	156277636	156277636	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156277636G>A	uc003lwf.1	+	1	88	c.63G>A	c.(61-63)ACG>ACA	p.T21T		NR_002168				RecName: Full=Putative protein phosphatase inhibitor 2-like protein 3; AltName: Full=Protein phosphatase 1, regulatory subunit 2 pseudogene 3;												0						AGACCTCTACGACTTCCTCTA	0.602													4	13					0	0	1	0	0
TIMD4	91937	broad.mit.edu	37	5	156378652	156378652	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156378652G>A	uc003lwh.2	-	3	607	c.550C>T	c.(550-552)CAG>TAG	p.Q184*	TIMD4_uc010jii.2_Nonsense_Mutation_p.Q184*	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	184	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTTGTCATCTGGAGTGGTGTT	0.552													39	125					0	0	1	0	0
TIMD4	91937	broad.mit.edu	37	5	156378712	156378712	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156378712G>A	uc003lwh.2	-	3	547	c.490C>T	c.(490-492)CCA>TCA	p.P164S	TIMD4_uc010jii.2_Missense_Mutation_p.P164S	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	164	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGTGCAGCTGGGGTTGTTGTC	0.532													83	184					0	0	1	0	0
TIMD4	91937	broad.mit.edu	37	5	156381657	156381657	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156381657C>T	uc003lwh.2	-	2	226	c.169G>A	c.(169-171)GAC>AAC	p.D57N	TIMD4_uc010jii.2_Missense_Mutation_p.D57N	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	57	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGGCACTGGTCTTTCCCCCAG	0.527													31	63					0	0	1	0	0
HAVCR1	26762	broad.mit.edu	37	5	156476087	156476087	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156476087C>T	uc010jij.1	-	5	928	c.743G>A	c.(742-744)AGA>AAA	p.R248K	HAVCR1_uc011ddl.1_Missense_Mutation_p.R79K|HAVCR1_uc003lwi.2_Missense_Mutation_p.R248K	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	243	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGTGGGTTCTCTCCTTATTGC	0.463													39	86					0	0	1	0	0
HAVCR1	26762	broad.mit.edu	37	5	156479481	156479481	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156479481C>T	uc010jij.1	-	4	749	c.564G>A	c.(562-564)ACG>ACA	p.T188T	HAVCR1_uc011ddl.1_Silent_p.T19T|HAVCR1_uc003lwi.2_Silent_p.T188T|HAVCR1_uc011ddm.1_Silent_p.T188T	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	183	8.|Extracellular (Potential).|11 X 6 AA approximate tandem repeats of V-P-T-T-T-T].|Thr-rich.				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTGGAACGCTCGTTGTCGTTG	0.473													171	448					0	0	1	0	0
FAM71B	153745	broad.mit.edu	37	5	156589787	156589787	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156589787G>A	uc003lwn.2	-	2	1589	c.1489C>T	c.(1489-1491)CGC>TGC	p.R497C		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	497						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAGCTCTTGCGAGAGGAGCCA	0.502													13	148					0	0	1	0	0
FAM71B	153745	broad.mit.edu	37	5	156590485	156590485	+	Missense_Mutation	SNP	C	T	T	rs148999608		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156590485C>T	uc003lwn.2	-	2	891	c.791G>A	c.(790-792)AGG>AAG	p.R264K		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	264	Ala-rich.					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACCTGCTGTCCTTGCTGCTCC	0.587													42	89					0	0	1	0	0
ITK	3702	broad.mit.edu	37	5	156635959	156635959	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156635959G>A	uc003lwo.1	+	2	280	c.198G>A	c.(196-198)GTG>GTA	p.V66V		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	66	PH.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTGAGATTGTGAAAAGTGACA	0.463			T	SYK	peripheral T-cell lymphoma								8	54					0	0	1	0	0
ITK	3702	broad.mit.edu	37	5	156667159	156667159	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156667159C>T	uc003lwo.1	+	10	1021	c.939C>T	c.(937-939)TTC>TTT	p.F313F		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	313	SH2.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGTATGTGTTCGATTCCATCC	0.328			T	SYK	peripheral T-cell lymphoma								19	81					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156727806	156727807	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156727806_156727807CC>TT	uc003lwq.2	+	8	609_610	c.471_472CC>TT	c.(469-474)TACCTC>TATTTC	p.L158F	CYFIP2_uc011ddn.1_Missense_Mutation_p.L132F|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Missense_Mutation_p.L158F|CYFIP2_uc003lws.2_Missense_Mutation_p.L158F|CYFIP2_uc003lwt.2_Missense_Mutation_p.L36F|CYFIP2_uc011ddp.1_Intron|CYFIP2_uc003lwp.2_Missense_Mutation_p.L36F	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	158					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTGAGGCCTACCTCCTGACCCT	0.569													13	25					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156741403	156741403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156741403G>A	uc003lwq.2	+	14	1300	c.1162G>A	c.(1162-1164)GAG>AAG	p.E388K	CYFIP2_uc011ddn.1_Missense_Mutation_p.E362K|CYFIP2_uc011ddo.1_Missense_Mutation_p.E192K|CYFIP2_uc003lwr.2_Missense_Mutation_p.E388K|CYFIP2_uc003lws.2_Missense_Mutation_p.E388K|CYFIP2_uc003lwt.2_Missense_Mutation_p.E266K|CYFIP2_uc011ddp.1_Missense_Mutation_p.E122K	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	388					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGAGTATCGCGAGCTCTTCGA	0.547													29	67					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156742096	156742096	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156742096C>T	uc003lwq.2	+	15	1488	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	CYFIP2_uc011ddn.1_Silent_p.F424F|CYFIP2_uc011ddo.1_Silent_p.F254F|CYFIP2_uc003lwr.2_Silent_p.F450F|CYFIP2_uc003lws.2_Silent_p.F450F|CYFIP2_uc003lwt.2_Silent_p.F328F|CYFIP2_uc011ddp.1_Silent_p.F184F	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	450					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AATTTGCCTTCGTTGAGGTAG	0.527													8	21					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156747679	156747679	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156747679C>T	uc003lwq.2	+	17	1678	c.1540C>T	c.(1540-1542)CGA>TGA	p.R514*	CYFIP2_uc011ddn.1_Nonsense_Mutation_p.R488*|CYFIP2_uc011ddo.1_Nonsense_Mutation_p.R318*|CYFIP2_uc003lwr.2_Nonsense_Mutation_p.R514*|CYFIP2_uc003lws.2_Nonsense_Mutation_p.R514*|CYFIP2_uc003lwt.2_Nonsense_Mutation_p.R392*|CYFIP2_uc011ddp.1_Nonsense_Mutation_p.R248*	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	514					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACAGGCAATTCGAAAGACCAT	0.532													24	46					0	0	1	0	0
C5orf40	408263	broad.mit.edu	37	5	156770210	156770210	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156770210G>A	uc003lwu.2	-	2	523	c.335C>T	c.(334-336)TCC>TTC	p.S112F	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	112						integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CACCCAAAGGGAGATCTGGGG	0.587											OREG0016977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	62					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156787340	156787340	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156787340C>T	uc003lwq.2	+	27	3006	c.2868C>T	c.(2866-2868)CCC>CCT	p.P956P	CYFIP2_uc011ddn.1_Silent_p.P930P|CYFIP2_uc011ddo.1_Silent_p.P760P|CYFIP2_uc003lwr.2_Silent_p.P956P|CYFIP2_uc003lws.2_Silent_p.P956P|CYFIP2_uc003lwt.2_Silent_p.P859P|CYFIP2_uc011ddp.1_Silent_p.P690P	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	981					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGGTGATGCCCAAGATATGCC	0.527													53	107					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156816422	156816422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156816422G>A	uc003lwq.2	+	31	3571	c.3433G>A	c.(3433-3435)GAG>AAG	p.E1145K	CYFIP2_uc011ddn.1_Missense_Mutation_p.E1119K|CYFIP2_uc011ddo.1_Missense_Mutation_p.E949K|CYFIP2_uc003lwr.2_Missense_Mutation_p.E1145K|CYFIP2_uc003lws.2_Missense_Mutation_p.E1145K|CYFIP2_uc003lwt.2_Missense_Mutation_p.E1048K|CYFIP2_uc011ddp.1_Missense_Mutation_p.E879K|CYFIP2_uc003lwv.2_Missense_Mutation_p.E100K	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1170					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGGAACCAACGAGTTCACAGC	0.597													5	16					0	0	1	0	0
NIPAL4	348938	broad.mit.edu	37	5	156899773	156899773	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156899773C>T	uc003lwx.3	+	6	1322	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Silent_p.F383F	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	402	Helical; (Potential).					integral to membrane	receptor activity				0						TGGGCGTGTTCATGCTGCATG	0.547													15	39					0	0	1	0	0
NIPAL4	348938	broad.mit.edu	37	5	156899784	156899784	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156899784C>T	uc003lwx.3	+	6	1333	c.1217C>T	c.(1216-1218)GCT>GTT	p.A406V	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Missense_Mutation_p.A387V	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	406	Helical; (Potential).					integral to membrane	receptor activity				0						ATGCTGCATGCTTTCAAAGAC	0.547													13	40					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156915384	156915384	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156915384C>T	uc003lwz.2	-	21	2503	c.2439G>A	c.(2437-2439)AGG>AGA	p.R813R	ADAM19_uc003lww.1_Silent_p.R546R|ADAM19_uc003lwy.2_Silent_p.R412R|ADAM19_uc011ddr.1_Silent_p.R744R	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	813	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCCTAGCAGCCCTGCTCAGGT	0.652													35	79					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156916190	156916190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156916190G>A	uc003lwz.2	-	20	2309	c.2245C>T	c.(2245-2247)CCC>TCC	p.P749S	ADAM19_uc003lww.1_Missense_Mutation_p.P482S|ADAM19_uc003lwy.2_Missense_Mutation_p.P348S|ADAM19_uc011ddr.1_Missense_Mutation_p.P680S	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	749	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACCCTGAAGGGACAACTAGAA	0.547													8	23					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156924090	156924090	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156924090G>A	uc003lwz.2	-	14	1470	c.1406C>T	c.(1405-1407)GCT>GTT	p.A469V	ADAM19_uc003lww.1_Missense_Mutation_p.A202V|ADAM19_uc003lwy.2_Missense_Mutation_p.A68V|ADAM19_uc011ddr.1_Missense_Mutation_p.A400V	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	469	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGTCCCAGGAGCCAACAGCTG	0.567													6	28					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156929952	156929952	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156929952C>T	uc003lwz.2	-	12	1231	c.1167G>A	c.(1165-1167)AGG>AGA	p.R389R	ADAM19_uc003lww.1_Silent_p.R122R|ADAM19_uc003lwy.2_5'UTR|ADAM19_uc011ddr.1_Silent_p.R320R	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	389	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCAGCTCCCTCCTGTTGCATC	0.552													38	81					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156997953	156997953	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:156997953C>T	uc003lwz.2	-	2	194	c.130G>A	c.(130-132)GAA>AAA	p.E44K	ADAM19_uc003lww.1_5'UTR|ADAM19_uc011ddr.1_5'UTR	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	44					proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATGATAAGTTCATGCTGCAGC	0.483													33	70					0	0	1	0	0
EBF1	1879	broad.mit.edu	37	5	158139206	158139206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:158139206G>A	uc010jip.2	-	14	1807	c.1505C>T	c.(1504-1506)TCC>TTC	p.S502F	EBF1_uc011ddw.1_Missense_Mutation_p.S370F|EBF1_uc011ddx.1_Missense_Mutation_p.S503F|EBF1_uc003lxl.3_Missense_Mutation_p.S471F	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	502	Pro/Ser/Thr-rich.				multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAAGGTGGGGGAGCCGCCCAA	0.567			T	HMGA2	lipoma								4	27					0	0	1	0	0
EBF1	1879	broad.mit.edu	37	5	158500435	158500435	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:158500435C>T	uc010jip.2	-	6	825	c.523G>A	c.(523-525)GAG>AAG	p.E175K	EBF1_uc011ddw.1_Missense_Mutation_p.E42K|EBF1_uc011ddx.1_Missense_Mutation_p.E175K|EBF1_uc003lxl.3_Intron	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	175					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAGGGAGTCTCATTTCGGTTG	0.418			T	HMGA2	lipoma								60	115					0	0	1	0	0
EBF1	1879	broad.mit.edu	37	5	158524020	158524020	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:158524020C>T	uc010jip.2	-	2	555	c.253G>A	c.(253-255)GAG>AAG	p.E85K	EBF1_uc011ddw.1_5'Flank|EBF1_uc011ddx.1_Missense_Mutation_p.E85K|EBF1_uc003lxl.3_Missense_Mutation_p.E85K	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	85					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCTGTCCTCTCGATCTCCACG	0.627			T	HMGA2	lipoma								4	30					0	0	1	0	0
RNF145	153830	broad.mit.edu	37	5	158609049	158609049	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:158609049G>A	uc003lxp.2	-	4	617	c.304C>T	c.(304-306)CGG>TGG	p.R102W	RNF145_uc011ddy.1_Missense_Mutation_p.R116W|RNF145_uc003lxo.1_Missense_Mutation_p.R130W|RNF145_uc011ddz.1_Missense_Mutation_p.R119W|RNF145_uc010jiq.1_Missense_Mutation_p.R132W|RNF145_uc011dea.1_Missense_Mutation_p.R118W	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	102						integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGTTCACTCCGAACATAGTCC	0.318													31	133					0	0	1	0	0
IL12B	3593	broad.mit.edu	37	5	158745790	158745790	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:158745790G>A	uc003lxr.1	-	6	851	c.809C>T	c.(808-810)TCC>TTC	p.S270F		NM_002187	NP_002178	P29460	IL12B_HUMAN	interleukin 12B precursor	270	Fibronectin type-III.				cell cycle arrest|cell migration|defense response to Gram-negative bacterium|interferon-gamma biosynthetic process|natural killer cell activation|negative regulation of interleukin-10 production|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell adhesion|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to UV-B|sexual reproduction|T-helper 1 type immune response|T-helper cell differentiation	interleukin-12 complex|interleukin-23 complex|membrane	cytokine activity|cytokine receptor activity|interleukin-12 receptor binding|protein heterodimerization activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAATGTCAGGGAGAAGTAGGA	0.507													26	62					0	0	1	0	0
IL12B	3593	broad.mit.edu	37	5	158747383	158747383	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:158747383C>T	uc003lxr.1	-	5	670	c.628G>A	c.(628-630)GTC>ATC	p.V210I		NM_002187	NP_002178	P29460	IL12B_HUMAN	interleukin 12B precursor	210					cell cycle arrest|cell migration|defense response to Gram-negative bacterium|interferon-gamma biosynthetic process|natural killer cell activation|negative regulation of interleukin-10 production|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell adhesion|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to UV-B|sexual reproduction|T-helper 1 type immune response|T-helper cell differentiation	interleukin-12 complex|interleukin-23 complex|membrane	cytokine activity|cytokine receptor activity|interleukin-12 receptor binding|protein heterodimerization activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCACCATGACCTCAATGGGC	0.502													11	136					0	0	1	0	0
IL12B	3593	broad.mit.edu	37	5	158750330	158750330	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:158750330G>A	uc003lxr.1	-	3	138	c.96C>T	c.(94-96)GTC>GTT	p.V32V		NM_002187	NP_002178	P29460	IL12B_HUMAN	interleukin 12B precursor	32	Ig-like C2-type.				cell cycle arrest|cell migration|defense response to Gram-negative bacterium|interferon-gamma biosynthetic process|natural killer cell activation|negative regulation of interleukin-10 production|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell adhesion|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to UV-B|sexual reproduction|T-helper 1 type immune response|T-helper cell differentiation	interleukin-12 complex|interleukin-23 complex|membrane	cytokine activity|cytokine receptor activity|interleukin-12 receptor binding|protein heterodimerization activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCAATTCTACGACATAAACTG	0.323													15	37					0	0	1	0	0
ADRA1B	147	broad.mit.edu	37	5	159344514	159344514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:159344514C>T	uc003lxt.1	+	1	775	c.602C>T	c.(601-603)CCC>CTC	p.P201L		NM_000679	NP_000670	P35368	ADA1B_HUMAN	alpha-1B-adrenergic receptor	201	Extracellular (By similarity).				cell proliferation|cell-cell signaling|G-protein signaling, coupled to cAMP nucleotide second messenger|intracellular protein kinase cascade	integral to plasma membrane	alpha1-adrenergic receptor activity			lung(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Modafinil(DB00745)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Olanzapine(DB00334)|Phendimetrazine(DB01579)|Phenylephrine(DB00388)|Prazosin(DB00457)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Trazodone(DB00656)	ACCGAAGAACCCTTCTATGCC	0.567													46	109					0	0	1	0	0
TTC1	7265	broad.mit.edu	37	5	159492045	159492045	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:159492045C>T	uc003lxu.2	+	8	902	c.852C>T	c.(850-852)TTC>TTT	p.F284F		NM_003314	NP_003305	Q99614	TTC1_HUMAN	tetratricopeptide repeat domain 1	284					protein folding		unfolded protein binding			skin(1)	1	Renal(175;0.00196)	all_hematologic(541;0.00014)|Breast(839;0.0101)|all_neural(177;0.0281)|Medulloblastoma(196;0.0425)|Lung NSC(249;0.119)|all_lung(500;0.163)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	Epithelial(171;8.37e-05)|all cancers(165;0.000694)|OV - Ovarian serous cystadenocarcinoma(192;0.0402)		CCATCAATTTCGTTCAAAATC	0.423													11	72					0	0	1	0	0
CCNJL	79616	broad.mit.edu	37	5	159680709	159680709	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:159680709G>A	uc003lyb.1	-	7	1236	c.984C>T	c.(982-984)TTC>TTT	p.F328F	CCNJL_uc011dee.1_Silent_p.F280F|CCNJL_uc003lyc.1_RNA	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	328						nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTGGTGGCTGGAACAGCACTT	0.642													16	44					0	0	1	0	0
CCNJL	79616	broad.mit.edu	37	5	159707595	159707595	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:159707595G>A	uc003lyb.1	-	3	469	c.217C>T	c.(217-219)CGC>TGC	p.R73C	CCNJL_uc011dee.1_Missense_Mutation_p.R73C|CCNJL_uc003lyc.1_RNA|CCNJL_uc011def.1_Missense_Mutation_p.R73C	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	73	Cyclin N-terminal.					nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACGTTGTAGCGATCCATGAAG	0.617													17	73					0	0	1	0	0
C5orf54	63920	broad.mit.edu	37	5	159821494	159821494	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:159821494G>A	uc003lye.1	-	2	1468	c.1004C>T	c.(1003-1005)TCC>TTC	p.S335F	C5orf54_uc003lyf.1_Missense_Mutation_p.S335F	NM_022090	NP_071373	Q8IZ13	CE054_HUMAN	transposon-derived Buster3 transposase-like	335										pancreas(1)	1						ttggcctcgggaaagccacct	0													22	37					0	0	1	0	0
SLU7	10569	broad.mit.edu	37	5	159831822	159831822	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:159831822G>A	uc003lyg.2	-	14	1613	c.1458C>T	c.(1456-1458)CTC>CTT	p.L486L		NM_006425	NP_006416	O95391	SLU7_HUMAN	step II splicing factor SLU7	486					alternative nuclear mRNA splicing, via spliceosome|nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|cytoplasm|nuclear speck|small nuclear ribonucleoprotein complex	pre-mRNA 3'-splice site binding|second spliceosomal transesterification activity|zinc ion binding			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTACCTCCATGAGGGTTTGAG	0.343													4	45					0	0	1	0	0
PTTG1	9232	broad.mit.edu	37	5	159851296	159851296	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:159851296C>T	uc003lyj.2	+	4	374	c.329C>T	c.(328-330)GCC>GTC	p.A110V	PTTG1_uc003lyk.2_Missense_Mutation_p.A110V	NM_004219	NP_004210	O95997	PTTG1_HUMAN	pituitary tumor-transforming protein 1	110					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|chromosome organization|chromosome segregation|DNA repair|mitosis|spermatogenesis|transcription from RNA polymerase II promoter	cytosol|nucleus	cysteine-type endopeptidase inhibitor activity|sequence-specific DNA binding transcription factor activity|SH3 domain binding				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.00219)|Epithelial(171;0.00348)|all cancers(165;0.0104)		TCAGATGATGCCTATCCAGAA	0.378													9	139					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160016608	160016608	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:160016608C>T	uc003lym.1	-	24	4588	c.3741G>A	c.(3739-3741)ATG>ATA	p.M1247I	ATP10B_uc010jit.1_Missense_Mutation_p.M497I	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	1247	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCCATGTCTTCATTTCCATTG	0.443													7	52					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160049500	160049500	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:160049500C>T	uc003lym.1	-	14	2560	c.1713G>A	c.(1711-1713)AAG>AAA	p.K571K	ATP10B_uc010jit.1_5'Flank|ATP10B_uc003lyn.2_Silent_p.K129K	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	571	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGAGGGAAGCCTTGGCAGGTC	0.522													29	58					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160059264	160059264	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:160059264T>A	uc003lym.1	-	13	2339	c.1492A>T	c.(1492-1494)AGC>TGC	p.S498C	ATP10B_uc003lyn.2_Missense_Mutation_p.S56C	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	498	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCTTTTTGGCTTCTCATAGTT	0.582													7	54					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160113175	160113175	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:160113175G>A	uc003lym.1	-	6	1228	c.381C>T	c.(379-381)TTC>TTT	p.F127F	ATP10B_uc003lyp.2_Silent_p.F127F|ATP10B_uc011deg.1_Silent_p.F171F|ATP10B_uc003lyo.2_5'Flank	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	127	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCATGATGACGAACAGGACAA	0.423													16	35					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160114869	160114869	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:160114869G>A	uc003lym.1	-	5	1060	c.213C>T	c.(211-213)ACC>ACT	p.T71T	ATP10B_uc003lyp.2_Silent_p.T71T|ATP10B_uc011deg.1_Silent_p.T115T|ATP10B_uc003lyo.2_5'Flank	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	71	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGTTGTGCAGGTTCTGTTGC	0.463													47	152					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160114891	160114891	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:160114891C>T	uc003lym.1	-	5	1038	c.191G>A	c.(190-192)AGG>AAG	p.R64K	ATP10B_uc003lyp.2_Missense_Mutation_p.R64K|ATP10B_uc011deg.1_Missense_Mutation_p.R108K|ATP10B_uc003lyo.2_5'Flank	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	64	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGGTATCTCCTGGAGACCTC	0.498													14	210					0	0	1	0	0
GABRB2	2561	broad.mit.edu	37	5	160721144	160721144	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:160721144A>G	uc003lys.1	-	11	1701	c.1483T>C	c.(1483-1485)TTC>CTC	p.F495L	GABRB2_uc011deh.1_Missense_Mutation_p.F296L|GABRB2_uc003lyr.1_Missense_Mutation_p.F457L|GABRB2_uc003lyt.1_Missense_Mutation_p.F457L|GABRB2_uc010jiu.1_Missense_Mutation_p.F394L	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	495	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	ACCACTGGGAAGAATATGCGG	0.463													30	73					0	0	1	0	0
GABRB2	2561	broad.mit.edu	37	5	160721269	160721269	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:160721269C>T	uc003lys.1	-	11	1576	c.1358G>A	c.(1357-1359)CGA>CAA	p.R453Q	GABRB2_uc011deh.1_Missense_Mutation_p.R254Q|GABRB2_uc003lyr.1_Missense_Mutation_p.R415Q|GABRB2_uc003lyt.1_Missense_Mutation_p.R415Q|GABRB2_uc010jiu.1_Missense_Mutation_p.R352Q	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	453	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CAGAGCATTTCGGCCAAAACT	0.532													29	61					0	0	1	0	0
GABRA6	2559	broad.mit.edu	37	5	161116026	161116026	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:161116026G>A	uc003lyu.2	+	4	635	c.297G>A	c.(295-297)GAG>GAA	p.E99E	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	99	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGCCAACTGAGATTCTGAGTC	0.413										TCGA Ovarian(5;0.080)			33	108					0	0	1	0	0
GABRA6	2559	broad.mit.edu	37	5	161119180	161119180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:161119180G>A	uc003lyu.2	+	8	1398	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	GABRA6_uc003lyv.2_Missense_Mutation_p.E125K	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	354	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AAAAGCTACTGAACCTTTGGA	0.413										TCGA Ovarian(5;0.080)			29	94					0	0	1	0	0
GABRA1	2554	broad.mit.edu	37	5	161292786	161292786	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:161292786C>T	uc010jiw.2	+	5	715	c.247C>T	c.(247-249)CAT>TAT	p.H83Y	GABRA1_uc010jix.2_Missense_Mutation_p.H83Y|GABRA1_uc010jiy.2_Missense_Mutation_p.H83Y|GABRA1_uc003lyx.3_Missense_Mutation_p.H83Y|GABRA1_uc010jiz.2_Missense_Mutation_p.H83Y|GABRA1_uc010jja.2_Missense_Mutation_p.H83Y|GABRA1_uc010jjb.2_Missense_Mutation_p.H83Y	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	83	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	CGTTTCAGACCATGATATGGT	0.388													52	136					0	0	1	0	0
GABRA1	2554	broad.mit.edu	37	5	161300263	161300263	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:161300263G>A	uc010jiw.2	+	6	864	c.396G>A	c.(394-396)AAG>AAA	p.K132K	GABRA1_uc010jix.2_Silent_p.K132K|GABRA1_uc010jiy.2_Silent_p.K132K|GABRA1_uc003lyx.3_Silent_p.K132K|GABRA1_uc010jiz.2_Silent_p.K132K|GABRA1_uc010jja.2_Silent_p.K132K|GABRA1_uc010jjb.2_Silent_p.K132K	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	132	Extracellular (Probable).			Missing (in Ref. 4; CAA31925).	gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	ACAATGGAAAGAAGTCAGTGG	0.463													9	55					0	0	1	0	0
GABRA1	2554	broad.mit.edu	37	5	161318012	161318012	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:161318012C>T	uc010jiw.2	+	9	1280	c.812C>T	c.(811-813)TCC>TTC	p.S271F	GABRA1_uc010jix.2_Missense_Mutation_p.S271F|GABRA1_uc010jiy.2_Missense_Mutation_p.S271F|GABRA1_uc003lyx.3_Missense_Mutation_p.S271F|GABRA1_uc010jiz.2_Missense_Mutation_p.S271F|GABRA1_uc010jja.2_Missense_Mutation_p.S271F|GABRA1_uc010jjb.2_Missense_Mutation_p.S271F	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	271	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	TCACAAGTCTCCTTCTGGCTC	0.413													20	80					0	0	1	0	0
GABRA1	2554	broad.mit.edu	37	5	161324243	161324243	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:161324243G>A	uc010jiw.2	+	11	1654	c.1186G>A	c.(1186-1188)GAA>AAA	p.E396K	GABRA1_uc010jix.2_Missense_Mutation_p.E396K|GABRA1_uc010jiy.2_Missense_Mutation_p.E396K|GABRA1_uc003lyx.3_Missense_Mutation_p.E396K|GABRA1_uc010jiz.2_Missense_Mutation_p.E396K|GABRA1_uc010jja.2_Missense_Mutation_p.E396K|GABRA1_uc010jjb.2_Missense_Mutation_p.E396K	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	396	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	TGCAACCATAGAACCTAAAGA	0.478													25	136					0	0	1	0	0
GABRG2	2566	broad.mit.edu	37	5	161524820	161524820	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:161524820G>A	uc003lyz.3	+	4	862	c.504G>A	c.(502-504)AGG>AGA	p.R168R	GABRG2_uc010jjc.2_Silent_p.R168R|GABRG2_uc003lyy.3_Silent_p.R168R|GABRG2_uc011dej.1_Silent_p.R73R	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	168	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		CCCCCAACAGGATGCTGAGAA	0.418													34	85					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167419974	167419974	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167419974G>A	uc010jjd.2	+	5	973	c.973G>A	c.(973-975)GGG>AGG	p.G325R	ODZ2_uc003lzq.2_Missense_Mutation_p.G204R|ODZ2_uc003lzr.3_Missense_Mutation_p.G134R	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GACCTCCTCGGGGAGCACACC	0.552													25	73					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167489245	167489245	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167489245G>A	uc010jjd.2	+	7	1490	c.1490G>A	c.(1489-1491)AGA>AAA	p.R497K	ODZ2_uc003lzq.2_Missense_Mutation_p.R376K|ODZ2_uc003lzr.3_Missense_Mutation_p.R265K	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TACATAAGAAGAGGACTTCCA	0.388													36	82					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167517611	167517611	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167517611G>A	uc010jjd.2	+	8	1548	c.1548G>A	c.(1546-1548)GAG>GAA	p.E516E	ODZ2_uc003lzq.2_Silent_p.E395E|ODZ2_uc003lzr.3_Silent_p.E284E|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		ACGGGAAGGAGAAGTGGAGTG	0.537													23	86					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167517659	167517659	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167517659C>T	uc010jjd.2	+	8	1596	c.1596C>T	c.(1594-1596)ACC>ACT	p.T532T	ODZ2_uc003lzq.2_Silent_p.T411T|ODZ2_uc003lzr.3_Silent_p.T300T|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2									p.T365T(1)		ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GCATACAGACCTTGGTTCAGA	0.507													36	110					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167625888	167625888	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167625888C>T	uc010jjd.2	+	16	2904	c.2904C>T	c.(2902-2904)TCC>TCT	p.S968S	ODZ2_uc003lzr.3_Silent_p.S745S|ODZ2_uc003lzt.3_Silent_p.S341S|ODZ2_uc010jje.2_Silent_p.S239S	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GAGGTGCTTCCTTGACTCTAC	0.547													23	98					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167626901	167626901	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167626901C>T	uc010jjd.2	+	17	3168	c.3168C>T	c.(3166-3168)TCC>TCT	p.S1056S	ODZ2_uc003lzr.3_Silent_p.S833S|ODZ2_uc003lzt.3_Silent_p.S429S|ODZ2_uc010jje.2_Silent_p.S327S	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TCCCTGGTTCCAATGTGAAAC	0.493													16	193					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167645800	167645800	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167645800C>T	uc010jjd.2	+	23	4877	c.4877C>T	c.(4876-4878)TCC>TTC	p.S1626F	ODZ2_uc003lzr.3_Missense_Mutation_p.S1396F|ODZ2_uc003lzt.3_Missense_Mutation_p.S999F|ODZ2_uc010jje.2_Missense_Mutation_p.S890F	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AATGGGAATTCCCTGAAGATC	0.498													41	83					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167645876	167645876	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167645876C>T	uc010jjd.2	+	23	4953	c.4953C>T	c.(4951-4953)ACC>ACT	p.T1651T	ODZ2_uc003lzr.3_Silent_p.T1421T|ODZ2_uc003lzt.3_Silent_p.T1024T|ODZ2_uc010jje.2_Silent_p.T915T	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TCACCCTCACCGTGGGCACCA	0.552													29	141					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167674013	167674013	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167674013G>A	uc010jjd.2	+	27	6042	c.6042G>A	c.(6040-6042)GGG>GGA	p.G2014G	ODZ2_uc003lzr.3_Silent_p.G1784G|ODZ2_uc003lzt.3_Silent_p.G1387G|ODZ2_uc010jje.2_Silent_p.G1278G	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		ACAAGTATGGGAAACTCTCCA	0.507													35	85					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167674097	167674097	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167674097G>A	uc010jjd.2	+	27	6126	c.6126G>A	c.(6124-6126)ATG>ATA	p.M2042I	ODZ2_uc003lzr.3_Missense_Mutation_p.M1812I|ODZ2_uc003lzt.3_Missense_Mutation_p.M1415I|ODZ2_uc010jje.2_Missense_Mutation_p.M1306I	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TCTTGAAGATGGTCAACCTCC	0.527													32	72					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167674678	167674678	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167674678C>T	uc010jjd.2	+	27	6707	c.6707C>T	c.(6706-6708)CCC>CTC	p.P2236L	ODZ2_uc003lzr.3_Missense_Mutation_p.P2006L|ODZ2_uc003lzt.3_Missense_Mutation_p.P1609L|ODZ2_uc010jje.2_Missense_Mutation_p.P1500L	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CGCCTCATGCCCTTGCGCTAT	0.557													12	35					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167675204	167675204	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167675204C>T	uc010jjd.2	+	27	7233	c.7233C>T	c.(7231-7233)ACC>ACT	p.T2411T	ODZ2_uc003lzr.3_Silent_p.T2181T|ODZ2_uc003lzt.3_Silent_p.T1784T|ODZ2_uc010jje.2_Silent_p.T1675T	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		ACCCCCTGACCAAGCTGGTCC	0.547													21	83					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167675260	167675260	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167675260C>T	uc010jjd.2	+	27	7289	c.7289C>T	c.(7288-7290)TCC>TTC	p.S2430F	ODZ2_uc003lzr.3_Missense_Mutation_p.S2200F|ODZ2_uc003lzt.3_Missense_Mutation_p.S1803F|ODZ2_uc010jje.2_Missense_Mutation_p.S1694F	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CGATGGACCTCCCCAGACTAT	0.522													14	40					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167689675	167689675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167689675G>A	uc010jjd.2	+	29	8158	c.8158G>A	c.(8158-8160)GAG>AAG	p.E2720K	ODZ2_uc003lzr.3_Missense_Mutation_p.E2490K|ODZ2_uc003lzt.3_Missense_Mutation_p.E2093K|ODZ2_uc010jje.2_Missense_Mutation_p.E1984K	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GACTGAGGGCGAGAAGCAGCA	0.642													4	13					0	0	1	0	0
WWC1	23286	broad.mit.edu	37	5	167882460	167882460	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:167882460C>T	uc003lzu.2	+	19	2851	c.2758C>T	c.(2758-2760)CGA>TGA	p.R920*	WWC1_uc003lzv.2_Nonsense_Mutation_p.R920*|WWC1_uc011den.1_Nonsense_Mutation_p.R920*|WWC1_uc003lzw.2_Nonsense_Mutation_p.R719*|WWC1_uc010jjf.1_Nonsense_Mutation_p.R192*	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	920	Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GCCATTTCTTCGAGGGAGCAC	0.642													31	151					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168093495	168093495	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168093495C>T	uc003mab.2	-	36	4956	c.4536G>A	c.(4534-4536)GAG>GAA	p.E1512E	SLIT3_uc010jjg.2_Silent_p.E1519E	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1512	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTAAGTGTCTCTCCACCTCTT	0.642													6	18					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168111061	168111061	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168111061C>T	uc003mab.2	-	32	4016	c.3596G>A	c.(3595-3597)GGA>GAA	p.G1199E	SLIT3_uc010jjg.2_Missense_Mutation_p.G1206E	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1199	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTCATTGTCTCCTTTGTAGAG	0.582													14	64					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168112721	168112721	+	Missense_Mutation	SNP	C	T	T	rs143177032		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168112721C>T	uc003mab.2	-	31	3946	c.3526G>A	c.(3526-3528)GTC>ATC	p.V1176I	SLIT3_uc010jjg.2_Missense_Mutation_p.V1183I	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1176	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGGGTCGGACCTTGGCGGAG	0.607													26	65					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168112740	168112740	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168112740C>T	uc003mab.2	-	31	3927	c.3507G>A	c.(3505-3507)GTG>GTA	p.V1169V	SLIT3_uc010jjg.2_Silent_p.V1176V	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1169	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGCCAGTTCCACGTAGGAGT	0.642													22	58					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168114084	168114084	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168114084C>T	uc003mab.2	-	30	3634	c.3214G>A	c.(3214-3216)GAG>AAG	p.E1072K	SLIT3_uc010jjg.2_Missense_Mutation_p.E1079K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1072	EGF-like 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTGTCTGTCTCACAGAGCTTC	0.597													20	33					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168175434	168175434	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168175434C>T	uc003mab.2	-	20	2563	c.2143G>A	c.(2143-2145)GAG>AAG	p.E715K	SLIT3_uc010jjg.2_Missense_Mutation_p.E715K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	715					apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTACTCTCCTCGTTGCCTGTG	0.632													8	49					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168176541	168176541	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168176541C>T	uc003mab.2	-	19	2493	c.2073G>A	c.(2071-2073)CAG>CAA	p.Q691Q	SLIT3_uc010jjg.2_Silent_p.Q691Q	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	691	LRRCT 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAAATGGCTTCTGGCACCTAG	0.572													38	81					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168180021	168180021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168180021C>T	uc003mab.2	-	18	2332	c.1912G>A	c.(1912-1914)GAC>AAC	p.D638N	SLIT3_uc010jjg.2_Missense_Mutation_p.D638N	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	638	LRR 16.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATCCGATTGTCATAGAGGGAC	0.572													12	37					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168180980	168180980	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168180980C>T	uc003mab.2	-	17	2138	c.1718G>A	c.(1717-1719)CGA>CAA	p.R573Q	SLIT3_uc010jjg.2_Missense_Mutation_p.R573Q	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	573	LRR 13.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCTCCCTCTCGCACCTCCTT	0.552													6	15					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168180991	168180991	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168180991G>A	uc003mab.2	-	17	2127	c.1707C>T	c.(1705-1707)ATC>ATT	p.I569I	SLIT3_uc010jjg.2_Silent_p.I569I	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	569	LRR 13.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCACCTCCTTGATCTTATTGT	0.547													8	11					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168199802	168199802	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168199802C>T	uc003mab.2	-	14	1863	c.1443G>A	c.(1441-1443)AAG>AAA	p.K481K	SLIT3_uc010jjg.2_Silent_p.K481K|SLIT3_uc010jji.2_Silent_p.K481K|SLIT3_uc003mac.1_Silent_p.K278K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	481	LRRCT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCGGAACTTCTTGCTCTTGA	0.607													15	46					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168212924	168212924	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168212924G>A	uc003mab.2	-	12	1559	c.1139C>T	c.(1138-1140)TCC>TTC	p.S380F	SLIT3_uc010jjg.2_Missense_Mutation_p.S380F|SLIT3_uc010jji.2_Missense_Mutation_p.S380F|SLIT3_uc003mac.1_Missense_Mutation_p.S177F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	380	LRR 10.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding	p.S380T(1)		ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAGCTGTAGGGACACCAGCCC	0.502													20	52					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168244307	168244307	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168244307G>A	uc003mab.2	-	8	1211	c.791C>T	c.(790-792)CCA>CTA	p.P264L	SLIT3_uc010jjg.2_Missense_Mutation_p.P264L|SLIT3_uc010jji.2_Missense_Mutation_p.P264L|SLIT3_uc003mac.1_Missense_Mutation_p.P61L	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	264	LRRCT 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATCCTCACCTGGGCACACGTA	0.572													19	41					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168310314	168310314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168310314C>T	uc003mab.2	-	5	861	c.441G>A	c.(439-441)GGG>GGA	p.G147G	SLIT3_uc010jjg.2_Silent_p.G147G|SLIT3_uc010jji.2_Silent_p.G147G	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	147	LRR 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCTCGGGATCCCCTGGATCT	0.468													15	46					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168678406	168678406	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168678406C>T	uc003mab.2	-	2	675	c.255G>A	c.(253-255)AAG>AAA	p.K85K	SLIT3_uc010jjg.2_Silent_p.K85K|SLIT3_uc010jji.2_Silent_p.K85K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	85					apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTCGGAGGTTCTTGAGCCCAG	0.443													28	89					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168678418	168678418	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168678418G>A	uc003mab.2	-	2	663	c.243C>T	c.(241-243)TTC>TTT	p.F81F	SLIT3_uc010jjg.2_Silent_p.F81F|SLIT3_uc010jji.2_Silent_p.F81F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	81	LRR 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGAGCCCAGCGAAGTCCATCT	0.433													32	95					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168678436	168678436	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:168678436C>T	uc003mab.2	-	2	645	c.225G>A	c.(223-225)AGG>AGA	p.R75R	SLIT3_uc010jjg.2_Silent_p.R75R|SLIT3_uc010jji.2_Silent_p.R75R	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	75	LRR 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCTTGGTGATCCTGGTGATAT	0.433													40	77					0	0	1	0	0
CCDC99	54908	broad.mit.edu	37	5	169021292	169021292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169021292C>T	uc003mae.3	+	5	954	c.675C>T	c.(673-675)GCC>GCT	p.A225A	CCDC99_uc010jjj.2_Silent_p.A154A|CCDC99_uc011deq.1_Silent_p.A42A|CCDC99_uc010jjk.2_Intron	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	225	Potential.				cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACTATAATGCCCTAGAGGTAC	0.348													13	40					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169108797	169108797	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169108797G>A	uc003maf.2	+	7	600	c.520G>A	c.(520-522)GAC>AAC	p.D174N	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	174					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAATATCTTGGACCCTGATAA	0.403													45	144					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169111329	169111329	+	Missense_Mutation	SNP	G	A	A	rs139449745		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169111329G>A	uc003maf.2	+	8	816	c.736G>A	c.(736-738)GAC>AAC	p.D246N	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	246					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTCTCTCTACGACCCCAACAA	0.498													12	151					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169116292	169116292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169116292C>T	uc003maf.2	+	9	878	c.798C>T	c.(796-798)TTC>TTT	p.F266F	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	266					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCCGGGGCTTCCCTAAGGAGA	0.498													17	56					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169127034	169127034	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169127034G>A	uc003maf.2	+	13	1229	c.1149G>A	c.(1147-1149)ATG>ATA	p.M383I	DOCK2_uc011der.1_RNA|DOCK2_uc010jjl.1_5'Flank	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	383					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGGTGACCATGAAGATGCTGG	0.582													46	177					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169141143	169141144	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169141143_169141144GG>AA	uc003maf.2	+	18	1851_1852	c.1771_1772GG>AA	c.(1771-1773)GGG>AAG	p.G591K	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.G83K|DOCK2_uc010jjl.1_Missense_Mutation_p.G109K	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	591	DHR-1.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAGTGTTGGGGGGCTTTCTGTC	0.545													22	49					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169145710	169145710	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169145710G>A	uc003maf.2	+	22	2262	c.2182G>A	c.(2182-2184)GAG>AAG	p.E728K	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.E220K	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	728					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAGCAGAGGGGAGCAATGTGA	0.383													31	60					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169412861	169412861	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169412861C>T	uc003maf.2	+	29	3008	c.2928C>T	c.(2926-2928)TTC>TTT	p.F976F	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.F468F	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	976	Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCATCATGTTCAAGGACCTCA	0.468													50	140					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169494601	169494601	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169494601G>A	uc003maf.2	+	45	4635	c.4555G>A	c.(4555-4557)GAT>AAT	p.D1519N	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.D1011N|DOCK2_uc003mah.2_Missense_Mutation_p.D75N	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1519	DHR-2.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTACCAGAGTGATGAGACCCT	0.493													29	106					0	0	1	0	0
FOXI1	2299	broad.mit.edu	37	5	169533045	169533045	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169533045G>A	uc003mai.3	+	1	129	c.84G>A	c.(82-84)ATG>ATA	p.M28I	FOXI1_uc003maj.3_Missense_Mutation_p.M28I	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	28	Pro-rich.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCCCCGAGATGAACCTCTACT	0.697									Pendred_syndrome				16	45					0	0	1	0	0
FOXI1	2299	broad.mit.edu	37	5	169533134	169533134	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169533134C>T	uc003mai.3	+	1	218	c.173C>T	c.(172-174)ACC>ATC	p.T58I	FOXI1_uc003maj.3_Missense_Mutation_p.T58I	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	58	Pro-rich.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TATGGGGCCACCCCCAACCCC	0.682									Pendred_syndrome				9	19					0	0	1	0	0
FOXI1	2299	broad.mit.edu	37	5	169533142	169533142	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169533142C>T	uc003mai.3	+	1	226	c.181C>T	c.(181-183)CCC>TCC	p.P61S	FOXI1_uc003maj.3_Missense_Mutation_p.P61S	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	61	Pro-rich.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CACCCCCAACCCCTACCTCTG	0.677									Pendred_syndrome				7	22					0	0	1	0	0
FOXI1	2299	broad.mit.edu	37	5	169535587	169535588	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169535587_169535588TC>CT	uc003mai.3	+	2	1154_1155	c.1109_1110TC>CT	c.(1108-1110)CTC>CCT	p.L370P	FOXI1_uc003maj.3_Missense_Mutation_p.L275P	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	370					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGTGGTGTCCTCTACCCCAGGG	0.574									Pendred_syndrome				35	86					0	0	1	0	0
KCNIP1	30820	broad.mit.edu	37	5	169780949	169780949	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:169780949C>T	uc003map.2	+	1	69	c.69C>T	c.(67-69)ATC>ATT	p.I23I		NM_001034838	NP_001030010	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 3	Error:Variant_position_missing_in_Q9NZI2_after_alignment					detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTAAGCTCATCACTGGGACCC	0.557													19	39					0	0	1	0	0
KCNIP1	30820	broad.mit.edu	37	5	170145770	170145770	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:170145770G>A	uc003mas.2	+	3	632	c.103G>A	c.(103-105)GAA>AAA	p.E35K	KCNIP1_uc003map.2_Missense_Mutation_p.E33K|KCNIP1_uc003mat.2_Missense_Mutation_p.E24K|KCNIP1_uc010jjp.2_5'UTR|KCNIP1_uc010jjq.2_Missense_Mutation_p.E24K	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	35					detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGATAAGATTGAAGATGAGCT	0.517													17	22					0	0	1	0	0
KCNIP1	30820	broad.mit.edu	37	5	170159870	170159870	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:170159870G>A	uc003mas.2	+	7	1064	c.535G>A	c.(535-537)GAG>AAG	p.E179K	KCNIP1_uc003map.2_Missense_Mutation_p.E177K|KCNIP1_uc003mat.2_Missense_Mutation_p.E168K|KCNIP1_uc010jjp.2_Missense_Mutation_p.E140K|KCNIP1_uc010jjq.2_Missense_Mutation_p.E193K	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	179					detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGTGCTCAAAGAGGACACTCC	0.498													21	59					0	0	1	0	0
GABRP	2568	broad.mit.edu	37	5	170222320	170222320	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:170222320G>A	uc003mau.2	+	5	547	c.349G>A	c.(349-351)GTG>ATG	p.V117M	GABRP_uc011dev.1_Missense_Mutation_p.V117M	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	117	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GTTCCTCTGGGTGCCAGATAC	0.552													55	130					0	0	1	0	0
GABRP	2568	broad.mit.edu	37	5	170235640	170235640	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:170235640G>A	uc003mau.2	+	8	914	c.716G>A	c.(715-717)CGG>CAG	p.R239Q	GABRP_uc011dev.1_Missense_Mutation_p.R239Q	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	239	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTTGAGCTTCGGAGGAATGTT	0.423													21	59					0	0	1	0	0
GABRP	2568	broad.mit.edu	37	5	170236609	170236609	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:170236609C>T	uc003mau.2	+	9	1068	c.870C>T	c.(868-870)ATC>ATT	p.I290I	GABRP_uc011dev.1_Intron	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	290	Helical; (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CACTGATGATCGGGTCCCGCA	0.517											OREG0017032	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	178					0	0	1	0	0
GABRP	2568	broad.mit.edu	37	5	170239104	170239104	+	Missense_Mutation	SNP	G	A	A	rs147911240		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:170239104G>A	uc003mau.2	+	10	1363	c.1165G>A	c.(1165-1167)GAC>AAC	p.D389N	GABRP_uc011dev.1_3'UTR	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	389	Cytoplasmic (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GAAAACCAGCGACAAGTTCAA	0.408													42	85					0	0	1	0	0
RANBP17	64901	broad.mit.edu	37	5	170610362	170610362	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:170610362C>T	uc003mba.2	+	18	1982	c.1966C>T	c.(1966-1968)CAT>TAT	p.H656Y	RANBP17_uc003mbb.2_5'UTR|RANBP17_uc003mbd.2_Missense_Mutation_p.H19Y|RANBP17_uc010jjs.2_RNA|RANBP17_uc003mbc.2_Missense_Mutation_p.H19Y	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	656					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CAGTGACAATCATAGTCTCAG	0.388			T	TRD@	ALL								31	70					0	0	1	0	0
FGF18	8817	broad.mit.edu	37	5	170883572	170883572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:170883572C>T	uc003mbk.2	+	5	924	c.387C>T	c.(385-387)TTC>TTT	p.F129F		NM_003862	NP_003853	O76093	FGF18_HUMAN	fibroblast growth factor 18 precursor	129					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell proliferation	extracellular space|nucleolus	growth factor activity|type 1 fibroblast growth factor receptor binding|type 2 fibroblast growth factor receptor binding				0	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGTGTGTGTTCATCGAGAAGG	0.468													32	81					0	0	1	0	0
FBXW11	23291	broad.mit.edu	37	5	171318532	171318532	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:171318532A>T	uc003mbm.1	-	6	1099	c.728T>A	c.(727-729)GTC>GAC	p.V243D	FBXW11_uc011dey.1_Missense_Mutation_p.V211D|FBXW11_uc003mbl.1_Missense_Mutation_p.V230D|FBXW11_uc003mbn.1_Missense_Mutation_p.V209D	NM_012300	NP_036432	Q9UKB1	FBW1B_HUMAN	F-box and WD repeat domain containing 11 isoform	243	WD 1.				cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of circadian rhythm|positive regulation of proteolysis|positive regulation of transcription, DNA-dependent|protein dephosphorylation|protein destabilization|protein polyubiquitination|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	centrosome|cytosol|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity	p.N260_I262(1)		ovary(1)|breast(1)	2	Renal(175;0.000159)|Lung NSC(126;0.00384)|all_lung(126;0.00659)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TAAACAGTAGACACCTTTACT	0.373													21	51					0	0	1	0	0
STK10	6793	broad.mit.edu	37	5	171520495	171520495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:171520495G>A	uc003mbo.1	-	9	1775	c.1475C>T	c.(1474-1476)ACC>ATC	p.T492I		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	492							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GCTCTCAGAGGTGCAGAGGCT	0.597													51	147					0	0	1	0	0
STK10	6793	broad.mit.edu	37	5	171520744	171520744	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:171520744G>C	uc003mbo.1	-	9	1526	c.1226C>G	c.(1225-1227)CCC>CGC	p.P409R		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	409							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTTCCGCAGGGGCACAGGCAC	0.627													10	56					0	0	1	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171765398	171765398	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:171765398G>A	uc003mbr.2	-	13	2882	c.2711C>T	c.(2710-2712)TCC>TTC	p.S904F		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	904	SH3 4.				adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GAGATAGTTGGAAGGAATCCA	0.547													30	95					0	0	1	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171765837	171765837	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:171765837G>A	uc003mbr.2	-	13	2443	c.2272C>T	c.(2272-2274)CCA>TCA	p.P758S		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	758	Pro-rich.				adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTGCGGGGTGGGACCACAGGT	0.617													14	50					0	0	1	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171766709	171766709	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:171766709G>A	uc003mbr.2	-	13	1571	c.1400C>T	c.(1399-1401)TCC>TTC	p.S467F		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	467					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CAGGGGCCGGGAGGGGCCCGT	0.642													15	39					0	0	1	0	0
HMP19	51617	broad.mit.edu	37	5	173473792	173473792	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:173473792G>A	uc003mcx.2	+	2	179	c.34G>A	c.(34-36)GGA>AGA	p.G12R		NM_015980	NP_057064	Q9Y328	NSG2_HUMAN	HMP19 protein	12	Cytoplasmic (Potential).				dopamine receptor signaling pathway	cytoplasmic vesicle membrane|Golgi cisterna membrane|integral to membrane|multivesicular body membrane	dopamine receptor binding			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00925)|all_lung(126;0.0148)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CAGCGAGAAGGGAACCAAGCC	0.532													39	103					0	0	1	0	0
HMP19	51617	broad.mit.edu	37	5	173531281	173531281	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:173531281C>T	uc003mcx.2	+	4	409	c.264C>T	c.(262-264)TTC>TTT	p.F88F	HMP19_uc011dfh.1_5'UTR	NM_015980	NP_057064	Q9Y328	NSG2_HUMAN	HMP19 protein	88	Helical; Signal-anchor for type II membrane protein; (Potential).				dopamine receptor signaling pathway	cytoplasmic vesicle membrane|Golgi cisterna membrane|integral to membrane|multivesicular body membrane	dopamine receptor binding			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00925)|all_lung(126;0.0148)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GCATCGTGTTCCTGGTGGTTT	0.498													30	57					0	0	1	0	0
MSX2	4488	broad.mit.edu	37	5	174156247	174156247	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:174156247C>T	uc003mcy.2	+	2	553	c.465C>T	c.(463-465)CTC>CTT	p.L155L		NM_002449	NP_002440	P35548	MSX2_HUMAN	msh homeobox 2	155	Homeobox.				cranial suture morphogenesis|negative regulation of transcription, DNA-dependent|osteoblast differentiation	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0	Renal(175;0.000159)|Lung NSC(126;0.0196)|all_lung(126;0.0303)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CCCAGCTCCTCGCCCTGGAGC	0.552													18	45					0	0	1	0	0
DRD1	1812	broad.mit.edu	37	5	174868913	174868913	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:174868913G>A	uc003mcz.2	-	2	2135	c.1190C>T	c.(1189-1191)TCC>TTC	p.S397F		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	397	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	GTCCTCAGAGGAGCCCACAGC	0.542													6	74					0	0	1	0	0
DRD1	1812	broad.mit.edu	37	5	174869243	174869243	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:174869243G>A	uc003mcz.2	-	2	1805	c.860C>T	c.(859-861)CCT>CTT	p.P287L		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	287	Helical; Name=6; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	GATGAAGAAAGGTAGCCAACA	0.463													14	34					0	0	1	0	0
SFXN1	94081	broad.mit.edu	37	5	174940517	174940517	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:174940517G>A	uc003mda.2	+	7	786	c.648G>A	c.(646-648)GGG>GGA	p.G216G	SFXN1_uc003mdb.1_Silent_p.G155G	NM_022754	NP_073591	Q9H9B4	SFXN1_HUMAN	sideroflexin 1	216					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity|protein binding			ovary(1)	1	all_cancers(89;0.00922)|Renal(175;0.000269)|Lung NSC(126;0.00515)|all_lung(126;0.00873)	Medulloblastoma(196;0.0399)|all_neural(177;0.0663)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			ACCGCTTGGGGGAGTCGGCGA	0.517													28	57					0	0	1	0	0
HRH2	3274	broad.mit.edu	37	5	175110674	175110674	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:175110674C>T	uc003mdd.2	+	1	2211	c.438C>T	c.(436-438)TCC>TCT	p.S146S	HRH2_uc003mdc.3_Silent_p.S146S	NM_022304	NP_071640	P25021	HRH2_HUMAN	histamine receptor H2 isoform 2	146	Helical; Name=4; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|immune response	integral to plasma membrane	histamine receptor activity			ovary(1)	1	all_cancers(89;0.00805)|Renal(175;0.000269)|Lung NSC(126;0.00419)|all_lung(126;0.00711)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Colorectal(1;0.0154)|COAD - Colon adenocarcinoma(1;0.149)	Betazole(DB00272)|Cimetidine(DB00501)|Doxepin(DB01142)|Epinastine(DB00751)|Famotidine(DB00927)|Histamine Phosphate(DB00667)|Nizatidine(DB00585)|Ranitidine(DB00863)	GGGTCATCTCCATTACCCTGT	0.557													18	43					0	0	1	0	0
HRH2	3274	broad.mit.edu	37	5	175111263	175111263	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:175111263C>T	uc003mdd.2	+	1	2800	c.1027C>T	c.(1027-1029)CAG>TAG	p.Q343*	HRH2_uc003mdc.3_Nonsense_Mutation_p.Q343*	NM_022304	NP_071640	P25021	HRH2_HUMAN	histamine receptor H2 isoform 2	343	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|immune response	integral to plasma membrane	histamine receptor activity			ovary(1)	1	all_cancers(89;0.00805)|Renal(175;0.000269)|Lung NSC(126;0.00419)|all_lung(126;0.00711)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Colorectal(1;0.0154)|COAD - Colon adenocarcinoma(1;0.149)	Betazole(DB00272)|Cimetidine(DB00501)|Doxepin(DB01142)|Epinastine(DB00751)|Famotidine(DB00927)|Histamine Phosphate(DB00667)|Nizatidine(DB00585)|Ranitidine(DB00863)	CCTGAAGCTCCAGGTGTGGAG	0.597													45	132					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	175572124	175572124	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:175572124C>T	uc003mdn.2	-	22		c.3181G>A								Homo sapiens cDNA clone IMAGE:5171181.																		AGGTTTACTTCCTGAAGAATG	0.413													5	27					0	0	1	0	0
C5orf25	375484	broad.mit.edu	37	5	175764149	175764149	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:175764149G>A	uc003mds.3	+	11	2763	c.2356G>A	c.(2356-2358)GAA>AAA	p.E786K	C5orf25_uc003mdt.3_Missense_Mutation_p.E371K|C5orf25_uc003mdr.3_RNA|C5orf25_uc003mdv.2_Missense_Mutation_p.E247K			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	786											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		TGTTTTAAGAGGTAAGGAGCA	0.403													24	112					0	0	1	0	0
ARL10	285598	broad.mit.edu	37	5	175793522	175793522	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:175793522C>T	uc003mec.1	+	2	388	c.323C>T	c.(322-324)CCC>CTC	p.P108L	ARL10_uc003meb.2_Missense_Mutation_p.P108L|MIR1271_hsa-mir-1271|MI0003814_5'Flank	NM_173664	NP_775935	Q8N8L6	ARL10_HUMAN	ADP-ribosylation factor-like 10	108							GTP binding			ovary(1)	1	all_cancers(89;0.0064)|Renal(175;0.000269)|Lung NSC(126;0.0105)|all_lung(126;0.0168)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.0965)		GGCCACATCCCCACCTGGGGC	0.637													10	52					0	0	1	0	0
CDHR2	54825	broad.mit.edu	37	5	175995723	175995723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:175995723C>T	uc003mem.1	+	4	235	c.169C>T	c.(169-171)CCT>TCT	p.P57S	CDHR2_uc003men.1_Missense_Mutation_p.P57S	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	57	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GGACAATGACCCTCTGACCTA	0.597													16	80					0	0	1	0	0
CDHR2	54825	broad.mit.edu	37	5	176003124	176003124	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176003124G>A	uc003mem.1	+	12	1198	c.1132G>A	c.(1132-1134)GAG>AAG	p.E378K	CDHR2_uc003men.1_Missense_Mutation_p.E378K	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	378	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CTACGTGGACGAGCATGCCTC	0.627													18	66					0	0	1	0	0
CDHR2	54825	broad.mit.edu	37	5	176008478	176008478	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176008478G>A	uc003mem.1	+	17	2019	c.1953G>A	c.(1951-1953)GAG>GAA	p.E651E	CDHR2_uc003men.1_Silent_p.E651E	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	651	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						TGGACAGAGAGGCCATCGACC	0.622													18	50					0	0	1	0	0
CDHR2	54825	broad.mit.edu	37	5	176011643	176011643	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176011643G>A	uc003mem.1	+	19	2427	c.2361G>A	c.(2359-2361)GGG>GGA	p.G787G	CDHR2_uc003men.1_Silent_p.G787G	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	787	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						ACCCCCAGGGGGGTGAGACCA	0.602													13	125					0	0	1	0	0
CDHR2	54825	broad.mit.edu	37	5	176016169	176016169	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176016169C>T	uc003mem.1	+	22	3060	c.2994C>T	c.(2992-2994)TTC>TTT	p.F998F	CDHR2_uc003men.1_Silent_p.F998F	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	998	Extracellular (Potential).|Cadherin 9.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CCGACGTGTTCGCTGGGAGCA	0.612													60	162					0	0	1	0	0
CDHR2	54825	broad.mit.edu	37	5	176022630	176022630	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176022630G>A	uc003mem.1	+	32	3956	c.3890G>A	c.(3889-3891)GGG>GAG	p.G1297E	CDHR2_uc003men.1_Missense_Mutation_p.G1297E	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	1297	Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CAGCTGGAGGGGCCATCCTAC	0.642													45	104					0	0	1	0	0
GPRIN1	114787	broad.mit.edu	37	5	176026534	176026534	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176026534G>A	uc003meo.1	-	2	477	c.302C>T	c.(301-303)CCC>CTC	p.P101L		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	101						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGACTCCTGGGGAGAGAAGCA	0.647													22	50					0	0	1	0	0
SNCB	6620	broad.mit.edu	37	5	176056599	176056599	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176056599C>T	uc003mep.2	-	3	500	c.57G>A	c.(55-57)GCG>GCA	p.A19A	SNCB_uc003meq.2_Silent_p.A19A|SNCB_uc010jke.1_Silent_p.A19A|hsa-mir-4281|MI0015885_5'Flank|EIF4E1B_uc010jkf.1_5'Flank	NM_001001502	NP_001001502	Q16143	SYUB_HUMAN	beta-synuclein	19							calcium ion binding|phospholipase inhibitor activity			ovary(1)	1	all_cancers(89;0.00222)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGGTTTTCTCCGCGGCTGCCA	0.672													11	29					0	0	1	0	0
EIF4E1B	253314	broad.mit.edu	37	5	176072431	176072431	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176072431G>A	uc010jkf.1	+	8	1112	c.528G>A	c.(526-528)GGG>GGA	p.G176G	TSPAN17_uc003mes.3_5'Flank|TSPAN17_uc003met.2_5'Flank|TSPAN17_uc003meu.2_5'Flank|TSPAN17_uc003mev.2_5'Flank|TSPAN17_uc003mew.2_5'Flank	NM_001099408	NP_001092878	A6NMX2	I4E1B_HUMAN	eukaryotic translation initiation factor 4E	176					regulation of translation	cytoplasm|mRNA cap binding complex	translation initiation factor activity				0	all_cancers(89;0.00185)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGTATGTGGGGCCGTCGTCA	0.617													14	40					0	0	1	0	0
UNC5A	90249	broad.mit.edu	37	5	176295654	176295655	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176295654_176295655CC>TT	uc003mey.2	+	4	721_722	c.529_530CC>TT	c.(529-531)CCT>TTT	p.P177F	UNC5A_uc003mex.1_Missense_Mutation_p.P177F|UNC5A_uc010jkg.1_Missense_Mutation_p.P137F	NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	177	Ig-like C2-type.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGAGGGCATCCCTCCAGCCGAG	0.668													3	6					0	0	1	0	0
UNC5A	90249	broad.mit.edu	37	5	176304662	176304662	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176304662G>A	uc003mey.2	+	10	1785	c.1593G>A	c.(1591-1593)TGG>TGA	p.W531*		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	531	ZU5.|Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGACAGCTGGAGCCTGCGCC	0.647													11	37					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176308482	176308482	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176308482G>A	uc003mfa.2	-	18	2540	c.2448C>T	c.(2446-2448)CCC>CCT	p.P816P	HK3_uc003mez.2_Silent_p.P372P	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	816	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGAGGTCAGGGGTAGCCCCA	0.652													10	31					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176314308	176314308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176314308C>T	uc003mfa.2	-	12	1723	c.1631G>A	c.(1630-1632)GGG>GAG	p.G544E	HK3_uc003mez.2_Missense_Mutation_p.G100E	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	544	ATP (Potential).|Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTTCGTGCCCCCGAGGTCCAG	0.647													18	39					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176314494	176314494	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176314494G>A	uc003mfa.2	-	11	1650	c.1558C>T	c.(1558-1560)CGC>TGC	p.R520C	HK3_uc003mez.2_Missense_Mutation_p.R76C	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	520	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCAGCATGCGAAGGGAGGAG	0.652													16	29					0	0	1	0	0
UIMC1	51720	broad.mit.edu	37	5	176378527	176378527	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176378527G>A	uc011dfp.1	-	9	1558	c.1391C>T	c.(1390-1392)CCA>CTA	p.P464L	UIMC1_uc003mfc.1_Missense_Mutation_p.P341L|UIMC1_uc003mfd.1_Missense_Mutation_p.P94L|UIMC1_uc003mfg.1_Missense_Mutation_p.P183L|UIMC1_uc003mff.1_Missense_Mutation_p.P94L	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	464	Necessary for interaction with NR6A1 C- terminus.				double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCTGCTACCTGGAGAGACTTC	0.353													94	281					0	0	1	0	0
FGFR4	2264	broad.mit.edu	37	5	176520147	176520147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176520147C>T	uc003mfl.2	+	9	1233	c.1066C>T	c.(1066-1068)CCC>TCC	p.P356S	FGFR4_uc003mfm.2_Missense_Mutation_p.P356S|FGFR4_uc011dfu.1_Missense_Mutation_p.P356S|FGFR4_uc011dfw.1_3'UTR|FGFR4_uc003mfo.2_Intron	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	356	Extracellular (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	AGAGGAGGACCCCACATGGAC	0.652										TSP Lung(9;0.080)			18	43					0	0	1	0	0
FGFR4	2264	broad.mit.edu	37	5	176524640	176524640	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176524640C>T	uc003mfl.2	+	18	2539	c.2372C>T	c.(2371-2373)TCC>TTC	p.S791F	FGFR4_uc003mfm.2_Missense_Mutation_p.S791F|FGFR4_uc011dfu.1_Missense_Mutation_p.S723F|FGFR4_uc003mfo.2_Missense_Mutation_p.S751F	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	791	Cytoplasmic (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	CCATTGGGATCCAGCTCCTTC	0.642										TSP Lung(9;0.080)			29	62					0	0	1	0	0
NSD1	64324	broad.mit.edu	37	5	176696688	176696688	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176696688C>T	uc003mfr.3	+	16	5527	c.5389C>T	c.(5389-5391)CTC>TTC	p.L1797F	NSD1_uc003mft.3_Missense_Mutation_p.L1528F|NSD1_uc003mfs.1_Missense_Mutation_p.L1694F|NSD1_uc011dfx.1_Missense_Mutation_p.L1445F	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1797	PWWP 2.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		GTTCCCAGTCCTCTTTTTTGG	0.498			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			28	78					0	0	1	0	0
NSD1	64324	broad.mit.edu	37	5	176707784	176707784	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176707784C>T	uc003mfr.3	+	18	5979	c.5841C>T	c.(5839-5841)TTC>TTT	p.F1947F	NSD1_uc003mft.3_Silent_p.F1678F|NSD1_uc003mfs.1_Silent_p.F1844F|NSD1_uc011dfx.1_Silent_p.F1595F	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1947	SET.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TTGAAATTTTCCGCACATTAC	0.463			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			27	54					0	0	1	0	0
NSD1	64324	broad.mit.edu	37	5	176721426	176721426	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176721426C>T	uc003mfr.3	+	23	7195	c.7057C>T	c.(7057-7059)CCT>TCT	p.P2353S	NSD1_uc003mft.3_Missense_Mutation_p.P2084S|NSD1_uc011dfx.1_Missense_Mutation_p.P2001S	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2353	Pro-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		ACTGGAAAGACCTCTGGGGAC	0.592			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			13	45					0	0	1	0	0
RGS14	10636	broad.mit.edu	37	5	176795904	176795904	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176795904C>T	uc003mgf.2	+	9	1218	c.1036C>T	c.(1036-1038)CTG>TTG	p.L346L	RGS14_uc003mgg.1_Silent_p.L193L|RGS14_uc003mgh.2_Silent_p.L193L|RGS14_uc003mgi.2_Silent_p.L116L|RGS14_uc003mgj.2_5'Flank	NM_006480	NP_006471	O43566	RGS14_HUMAN	regulator of G-protein signalling 14	346	Necessary for interaction with RABGEF1 (By similarity).|RBD 1.				chromosome segregation|long-term memory|long-term synaptic potentiation|negative regulation of ERK1 and ERK2 cascade|negative regulation of MAP kinase activity|negative regulation of synaptic plasticity|nucleocytoplasmic transport|platelet-derived growth factor receptor signaling pathway|positive regulation of neurogenesis|regulation of DNA-dependent transcription in response to stress|regulation of G-protein coupled receptor protein signaling pathway|response to oxidative stress|spindle organization|visual learning|zygote asymmetric cell division	cell junction|centrosome|dendritic spine|microtubule|PML body|postsynaptic density|postsynaptic membrane|spindle pole	GDP-dissociation inhibitor activity|GTPase activator activity|microtubule binding|receptor signaling complex scaffold activity|receptor signaling protein activity			lung(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAAGGTCTACCTGGTGGGCAA	0.398											OREG0017086	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	30					0	0	1	0	0
RGS14	10636	broad.mit.edu	37	5	176798513	176798513	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176798513C>T	uc003mgf.2	+	14	1603	c.1421C>T	c.(1420-1422)CCC>CTC	p.P474L	RGS14_uc003mgh.2_Missense_Mutation_p.P322L|RGS14_uc003mgi.2_Missense_Mutation_p.P245L|RGS14_uc003mgj.2_RNA	NM_006480	NP_006471	O43566	RGS14_HUMAN	regulator of G-protein signalling 14	474					chromosome segregation|long-term memory|long-term synaptic potentiation|negative regulation of ERK1 and ERK2 cascade|negative regulation of MAP kinase activity|negative regulation of synaptic plasticity|nucleocytoplasmic transport|platelet-derived growth factor receptor signaling pathway|positive regulation of neurogenesis|regulation of DNA-dependent transcription in response to stress|regulation of G-protein coupled receptor protein signaling pathway|response to oxidative stress|spindle organization|visual learning|zygote asymmetric cell division	cell junction|centrosome|dendritic spine|microtubule|PML body|postsynaptic density|postsynaptic membrane|spindle pole	GDP-dissociation inhibitor activity|GTPase activator activity|microtubule binding|receptor signaling complex scaffold activity|receptor signaling protein activity			lung(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCCACCCATCCCCCTCCAGCG	0.597													42	214					0	0	1	0	0
RGS14	10636	broad.mit.edu	37	5	176798994	176798994	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176798994C>T	uc003mgf.2	+	15	1801	c.1619C>T	c.(1618-1620)TCC>TTC	p.S540F	RGS14_uc003mgh.2_Missense_Mutation_p.S388F|RGS14_uc003mgi.2_Missense_Mutation_p.S311F|RGS14_uc003mgj.2_RNA	NM_006480	NP_006471	O43566	RGS14_HUMAN	regulator of G-protein signalling 14	540					chromosome segregation|long-term memory|long-term synaptic potentiation|negative regulation of ERK1 and ERK2 cascade|negative regulation of MAP kinase activity|negative regulation of synaptic plasticity|nucleocytoplasmic transport|platelet-derived growth factor receptor signaling pathway|positive regulation of neurogenesis|regulation of DNA-dependent transcription in response to stress|regulation of G-protein coupled receptor protein signaling pathway|response to oxidative stress|spindle organization|visual learning|zygote asymmetric cell division	cell junction|centrosome|dendritic spine|microtubule|PML body|postsynaptic density|postsynaptic membrane|spindle pole	GDP-dissociation inhibitor activity|GTPase activator activity|microtubule binding|receptor signaling complex scaffold activity|receptor signaling protein activity			lung(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGGCCCAGCTCCGAGGAGACC	0.632													35	344					0	0	1	0	0
SLC34A1	6569	broad.mit.edu	37	5	176812784	176812784	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176812784C>T	uc003mgk.3	+	2	143	c.42C>T	c.(40-42)TCC>TCT	p.S14S		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	14	Cytoplasmic (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGCTGTCTCCCCACTCCCAG	0.622													6	19					0	0	1	0	0
SLC34A1	6569	broad.mit.edu	37	5	176813028	176813028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176813028C>T	uc003mgk.3	+	3	251	c.150C>T	c.(148-150)CCC>CCT	p.P50P		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	50	Cytoplasmic (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ATGCCTTCCCCAGCCTGGGCC	0.682													36	67					0	0	1	0	0
SLC34A1	6569	broad.mit.edu	37	5	176820706	176820706	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176820706C>T	uc003mgk.3	+	9	1049	c.948C>T	c.(946-948)TCC>TCT	p.S316S		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	316	Extracellular (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTCCCACCTCCATGTCCAGAG	0.468													22	86					0	0	1	0	0
F12	2161	broad.mit.edu	37	5	176831610	176831610	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176831610C>T	uc003mgo.3	-	8	739	c.690G>A	c.(688-690)AGG>AGA	p.R230R	F12_uc011dfy.1_5'Flank|F12_uc003mgn.3_5'Flank|F12_uc010jkl.2_RNA	NM_000505	NP_000496	P00748	FA12_HUMAN	coagulation factor XII precursor	230	Kringle.				Factor XII activation|fibrinolysis|innate immune response|positive regulation of blood coagulation|positive regulation of fibrinolysis|positive regulation of plasminogen activation|protein autoprocessing|response to misfolded protein|zymogen activation	extracellular space|plasma membrane	serine-type endopeptidase activity				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGAGCGTGGTCCTGGCCAGGC	0.701									Hereditary_Angioedema		OREG0017088	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	12					0	0	1	0	0
DBN1	1627	broad.mit.edu	37	5	176885201	176885201	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176885201T>G	uc003mgy.2	-	12	1806	c.1634A>C	c.(1633-1635)GAC>GCC	p.D545A	DBN1_uc011dga.1_Missense_Mutation_p.D277A|DBN1_uc003mgx.2_Missense_Mutation_p.D547A|DBN1_uc010jkn.1_Missense_Mutation_p.D495A|DBN1_uc003mgz.1_Missense_Mutation_p.D528A	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	545					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTCCTCTGGGTCACAGAAGGT	0.652													10	64					0	0	1	0	0
DOK3	79930	broad.mit.edu	37	5	176931397	176931397	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176931397G>A	uc003mhk.2	-	6	1083	c.1078C>T	c.(1078-1080)CCC>TCC	p.P360S	DOK3_uc003mhh.3_Intron|DOK3_uc003mhi.3_Intron|DOK3_uc003mhj.3_Intron|DOK3_uc003mhl.2_Missense_Mutation_p.P304S	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	360	Pro-rich.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			TGGGGTCCGGGCTCGGCCAGG	0.687													4	25					0	0	1	0	0
DDX41	51428	broad.mit.edu	37	5	176939611	176939611	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176939611G>A	uc003mho.2	-	14	1456	c.1435C>T	c.(1435-1437)CGG>TGG	p.R479W	DOK3_uc003mhi.3_5'Flank|DOK3_uc003mhj.3_5'Flank|DOK3_uc003mhk.2_5'Flank|DOK3_uc003mhl.2_5'Flank|DDX41_uc003mhm.2_Missense_Mutation_p.R259W|DDX41_uc003mhn.2_Missense_Mutation_p.R348W|DDX41_uc003mhp.2_Missense_Mutation_p.R348W	NM_016222	NP_057306	Q9UJV9	DDX41_HUMAN	DEAD-box protein abstrakt	479	Helicase C-terminal.				apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			TTGCCCTCCCGGAATGCCTCG	0.597													5	77					0	0	1	0	0
FAM193B	54540	broad.mit.edu	37	5	176951947	176951947	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:176951947G>A	uc003mhs.3	-	8	3025	c.1436C>T	c.(1435-1437)CCT>CTT	p.P479L	FAM193B_uc003mhr.2_Missense_Mutation_p.P16L|FAM193B_uc003mht.2_Missense_Mutation_p.P138L|FAM193B_uc003mhu.2_Missense_Mutation_p.P191L|FAM193B_uc003mhv.2_Missense_Mutation_p.P138L|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540	512											0						TAGACTCTGAGGCTCAGGCTC	0.557													20	18					0	0	1	0	0
PROP1	5626	broad.mit.edu	37	5	177419863	177419863	+	Silent	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:177419863A>T	uc003mif.1	-	3	837	c.528T>A	c.(526-528)CCT>CCA	p.P176P		NM_006261	NP_006252	O75360	PROP1_HUMAN	PROP paired-like homeobox 1	176					central nervous system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(89;0.00176)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGGCTGGGAAGGGAGGGCAT	0.622													6	26					0	0	1	0	0
PROP1	5626	broad.mit.edu	37	5	177421114	177421114	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:177421114C>T	uc003mif.1	-	2	644	c.335G>A	c.(334-336)CGA>CAA	p.R112Q		NM_006261	NP_006252	O75360	PROP1_HUMAN	PROP paired-like homeobox 1	112	Homeobox.				central nervous system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(89;0.00176)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CACCTGGATTCGGGCCTCACT	0.527													37	102					0	0	1	0	0
FAM153C	653316	broad.mit.edu	37	5	177473889	177473889	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:177473889C>T	uc011dge.1	+	10	491	c.290C>T	c.(289-291)TCC>TTC	p.S97F	FAM153C_uc003mig.1_Missense_Mutation_p.S97F	NM_001079527	NP_001072995			hypothetical protein LOC653316												0	all_cancers(89;0.00176)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCAAGTCCTTCCTCTGCACCT	0.527													26	82					0	0	1	0	0
COL23A1	91522	broad.mit.edu	37	5	177675235	177675235	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:177675235C>T	uc003mje.2	-	20	1528	c.1170G>A	c.(1168-1170)GGG>GGA	p.G390G	COL23A1_uc010jkt.2_Silent_p.G272G	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	390	Extracellular (Potential).|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		CCCCCTTCTCCCCCTTGAGGC	0.647													35	77					0	0	1	0	0
COL23A1	91522	broad.mit.edu	37	5	177686749	177686749	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:177686749C>T	uc003mje.2	-	12	1061	c.703_splice	c.e12-1	p.G235_splice	COL23A1_uc010jkt.2_Splice_Site_p.R82_splice	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1							collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		CAGGCTCACCCTGGGGGAGGC	0.607													52	165					0	0	1	0	0
COL23A1	91522	broad.mit.edu	37	5	177690298	177690298	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:177690298C>T	uc003mje.2	-	9	908	c.550G>A	c.(550-552)GGG>AGG	p.G184R	COL23A1_uc010jkt.2_Silent_p.L31L	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	184	Extracellular (Potential).|Collagen-like 1.|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		CCCGGAGGCCCAGCAGCTCCA	0.672													9	21					0	0	1	0	0
COL23A1	91522	broad.mit.edu	37	5	177694313	177694313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:177694313G>A	uc003mje.2	-	8	875	c.517C>T	c.(517-519)CCC>TCC	p.P173S	COL23A1_uc010jkt.2_Silent_p.A20A	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	173	Extracellular (Potential).|Collagen-like 1.|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		CTTACCCGGGGGCCAAAGTCT	0.453													7	40					0	0	1	0	0
ZNF354A	6940	broad.mit.edu	37	5	178139858	178139858	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178139858G>A	uc003mjj.2	-	5	1219	c.1021C>T	c.(1021-1023)CTT>TTT	p.L341F		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	341					regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		CATCCAGAAAGGGATGTGCTG	0.403													47	89					0	0	1	0	0
ZNF354A	6940	broad.mit.edu	37	5	178140442	178140442	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178140442G>A	uc003mjj.2	-	5	635	c.437C>T	c.(436-438)TCA>TTA	p.S146L		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	146					regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		GTGGGTGGCTGAAACTATCTG	0.363													69	126					0	0	1	0	0
ZFP2	80108	broad.mit.edu	37	5	178358763	178358763	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178358763G>A	uc003mjn.1	+	5	958	c.449G>A	c.(448-450)AGA>AAA	p.R150K	ZFP2_uc010jky.2_Missense_Mutation_p.R150K|ZFP2_uc010jkx.1_Missense_Mutation_p.R150K	NM_030613	NP_085116	Q6ZN57	ZFP2_HUMAN	zinc finger protein 2 homolog	150	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.00655)|GBM - Glioblastoma multiforme(465;0.0302)|OV - Ovarian serous cystadenocarcinoma(192;0.0615)|Epithelial(171;0.111)		GTACATCAAAGAATTCATACT	0.413													26	57					0	0	1	0	0
ZNF454	285676	broad.mit.edu	37	5	178392033	178392033	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178392033C>T	uc003mjo.1	+	5	899	c.628C>T	c.(628-630)CAT>TAT	p.H210Y	ZNF454_uc010jkz.1_Missense_Mutation_p.H210Y	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TCAGAAAATTCATATTAAGGA	0.358													14	51					0	0	1	0	0
ZNF454	285676	broad.mit.edu	37	5	178392827	178392827	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178392827G>A	uc003mjo.1	+	5	1693	c.1422G>A	c.(1420-1422)GAG>GAA	p.E474E	ZNF454_uc010jkz.1_Silent_p.E474E	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	474	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		AAATCTGTGAGAAAGCCTTTA	0.383													48	84					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178409938	178409938	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178409938G>A	uc003mjr.2	-	9	2588	c.2409C>T	c.(2407-2409)TTC>TTT	p.F803F	GRM6_uc003mjq.2_Silent_p.F206F	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	803	Helical; Name=6; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		CAGTGCCAAAGAAGATGGGCA	0.562													34	58					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178410064	178410064	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178410064G>A	uc003mjr.2	-	9	2462	c.2283C>T	c.(2281-2283)CTC>CTT	p.L761L	GRM6_uc003mjq.2_Silent_p.L164L	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	761	Helical; Name=5; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		ACGTGACCATGAGCAGGAGGC	0.622													24	74					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178410187	178410187	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178410187G>A	uc003mjr.2	-	9	2339	c.2160C>T	c.(2158-2160)CCC>CCT	p.P720P	GRM6_uc003mjq.2_Silent_p.P123P	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	720	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		CGCTGTGTGGGGGCCGGGCCC	0.602													18	41					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178413680	178413680	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178413680C>T	uc003mjr.2	-	8	1754	c.1575G>A	c.(1573-1575)GGG>GGA	p.G525G	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Silent_p.G108G|GRM6_uc003mjs.1_Silent_p.G145G	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	525	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		TCTTCCGCTCCCCCGGCCCGC	0.672													13	46					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178416016	178416016	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178416016C>T	uc003mjr.2	-	6	1453	c.1274G>A	c.(1273-1275)GGG>GAG	p.G425E	GRM6_uc010jla.1_Missense_Mutation_p.G8E|GRM6_uc003mjs.1_Missense_Mutation_p.G45E	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	425	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GCCTGTGTGCCCAGGGCAGAG	0.627													6	29					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178416045	178416045	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178416045G>A	uc003mjr.2	-	6	1424	c.1245C>T	c.(1243-1245)CTC>CTT	p.L415L	GRM6_uc010jla.1_Intron|GRM6_uc003mjs.1_Silent_p.L35L	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	415	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GCATGCTGTGGAGGGCGTGGG	0.632													12	22					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178416279	178416279	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178416279G>A	uc003mjr.2	-	5	1319	c.1140C>T	c.(1138-1140)ACC>ACT	p.T380T	GRM6_uc010jla.1_5'UTR|GRM6_uc003mjs.1_5'UTR	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	380	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		TGCATTTGCGGGTGGAATCGT	0.428													10	46					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178416282	178416282	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178416282G>A	uc003mjr.2	-	5	1316	c.1137C>T	c.(1135-1137)TCC>TCT	p.S379S	GRM6_uc010jla.1_5'UTR|GRM6_uc003mjs.1_5'UTR	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	379	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		ATTTGCGGGTGGAATCGTCTG	0.423													21	36					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178417660	178417660	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178417660G>A	uc003mjr.2	-	4	1124	c.945C>T	c.(943-945)CCC>CCT	p.P315P	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	315	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GGCTCAAGATGGGTGAGGTCT	0.667													3	15					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178418886	178418886	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178418886G>A	uc003mjr.2	-	2	882	c.703C>T	c.(703-705)CAG>TAG	p.Q235*	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	235	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		CGGGAGATCTGAACGAAGGCC	0.617													11	26					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178418910	178418910	+	Missense_Mutation	SNP	C	T	T	rs17078901		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178418910C>T	uc003mjr.2	-	2	858	c.679G>A	c.(679-681)GAA>AAA	p.E227K	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	227	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		ACCCCACTTTCGCCATAGTTG	0.637													11	28					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178553105	178553105	+	Missense_Mutation	SNP	G	A	A	rs145330384		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178553105G>A	uc003mjw.2	-	18	2644	c.2644C>T	c.(2644-2646)CGC>TGC	p.R882C		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	882	TSP type-1 2.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		AGCCTCCGGCGGCAGCCATAC	0.657													39	89					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178554971	178554971	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178554971G>A	uc003mjw.2	-	17	2606	c.2606C>T	c.(2605-2607)CCC>CTC	p.P869L		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	869	TSP type-1 2.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TCCGCCACAGGGCTTGGAGCA	0.612													15	141					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178555048	178555048	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178555048G>A	uc003mjw.2	-	17	2529	c.2529C>T	c.(2527-2529)GTC>GTT	p.V843V		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	843	Spacer.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TGTTGTCGTCGACATTCAGTG	0.582													11	112					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178555117	178555117	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178555117G>A	uc003mjw.2	-	17	2460	c.2460C>T	c.(2458-2460)GTC>GTT	p.V820V		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	820	Spacer.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CCACCGGGATGACCTGTGCCA	0.567													16	46					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178556956	178556956	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178556956G>A	uc003mjw.2	-	16	2434	c.2434C>T	c.(2434-2436)CTC>TTC	p.L812F		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	812	Spacer.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GTGCCGTGGAGGGGGCCCATG	0.657													22	55					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178557010	178557010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178557010C>T	uc003mjw.2	-	16	2380	c.2380G>A	c.(2380-2382)GAG>AAG	p.E794K		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	794	Spacer.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TACTCCCACTCCACGCCCATG	0.582													20	62					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178562966	178562966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178562966C>T	uc003mjw.2	-	13	2029	c.2029G>A	c.(2029-2031)GGG>AGG	p.G677R		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	677	Cys-rich.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CAGCGCGTCCCGTCATGCACC	0.632													34	64					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178562985	178562985	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178562985C>T	uc003mjw.2	-	13	2010	c.2010G>A	c.(2008-2010)ATG>ATA	p.M670I		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	670	Cys-rich.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CCATGCGCTTCATGGACACCA	0.647													8	106					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178564819	178564819	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178564819G>A	uc003mjw.2	-	12	1902	c.1902C>T	c.(1900-1902)TTC>TTT	p.F634F		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	634	Cys-rich.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CGCCGTGCTCGAAGTACAGGT	0.692													3	8					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178585872	178585872	+	Silent	SNP	G	A	A	rs149253571		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:178585872G>A	uc003mjw.2	-	6	984	c.984C>T	c.(982-984)AGC>AGT	p.S328S	ADAMTS2_uc011dgm.1_Silent_p.S328S	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	328	Peptidase M12B.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TCTCGATGAGGCTCATGGACT	0.612													8	26					0	0	1	0	0
HNRNPH1	3187	broad.mit.edu	37	5	179044567	179044567	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:179044567G>A	uc003mkf.3	-	9	1111	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	HNRNPH1_uc011dgn.1_Silent_p.F65F|HNRNPH1_uc003mkg.3_Silent_p.F243F|HNRNPH1_uc003mke.3_Silent_p.F335F|HNRNPH1_uc003mkh.3_Silent_p.F335F	NM_005520	NP_005511	P31943	HNRH1_HUMAN	heterogeneous nuclear ribonucleoprotein H1	335	RRM 3.|2 X 16 AA Gly-rich approximate repeats.				regulation of RNA splicing	actin cytoskeleton|catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|poly(U) RNA binding|protein binding				0						CATGAGTTGCGAACTCGACAT	0.438													66	124					0	0	1	0	0
MAML1	9794	broad.mit.edu	37	5	179193008	179193008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:179193008C>T	uc003mkm.2	+	2	1260	c.997C>T	c.(997-999)CCT>TCT	p.P333S	MAML1_uc003mkn.1_Missense_Mutation_p.P333S	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	333					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTCCTCTGCCCCTGTGAGTAC	0.602													20	41					0	0	1	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179302048	179302048	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:179302048G>A	uc003mlh.2	-	12	2077	c.2040C>T	c.(2038-2040)CCC>CCT	p.P680P	TBC1D9B_uc003mli.2_Silent_p.P680P|TBC1D9B_uc003mlj.2_Silent_p.P680P|TBC1D9B_uc011dgv.1_5'Flank	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	680	Helical; (Potential).|Rab-GAP TBC.					integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CGCTCTCGAAGGGCATGACGC	0.607													30	71					0	0	1	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179306689	179306689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:179306689G>A	uc003mlh.2	-	8	1392	c.1355C>T	c.(1354-1356)TCC>TTC	p.S452F	TBC1D9B_uc003mli.2_Missense_Mutation_p.S452F|TBC1D9B_uc003mlj.2_Missense_Mutation_p.S452F	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	452						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGGCCCTGGGATGCGGTTGG	0.672													49	97					0	0	1	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179545793	179545793	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:179545793G>A	uc003mlq.2	-	8	1278	c.981C>T	c.(979-981)ATC>ATT	p.I327I	RASGEF1C_uc003mlr.2_Silent_p.I327I|RASGEF1C_uc003mlp.3_Silent_p.I176I	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	327	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTACCTCGAGGATGAAAAACT	0.607													8	119					0	0	1	0	0
GFPT2	9945	broad.mit.edu	37	5	179728597	179728597	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:179728597G>A	uc003mlw.1	-	19	2114	c.2016C>T	c.(2014-2016)CCC>CCT	p.P672P		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	672	SIS 2.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	CCAGATTTCTGGGGAAGTCAA	0.453													22	81					0	0	1	0	0
GFPT2	9945	broad.mit.edu	37	5	179739455	179739455	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:179739455G>A	uc003mlw.1	-	15	1619	c.1521C>T	c.(1519-1521)ATC>ATT	p.I507I		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	507					dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	AGCCACGGATGATCTCTTGCC	0.433													30	76					0	0	1	0	0
GFPT2	9945	broad.mit.edu	37	5	179745905	179745905	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:179745905G>A	uc003mlw.1	-	10	944	c.846C>T	c.(844-846)ATC>ATT	p.I282I		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	282	Glutamine amidotransferase type-2.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	CCACTGCGGCGATGTCATCGT	0.582													19	32					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180036981	180036981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180036981G>A	uc003mma.3	-	28	3810	c.3731C>T	c.(3730-3732)GCT>GTT	p.A1244V	FLT4_uc003mlz.3_Missense_Mutation_p.A1244V	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1244	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	ACGGGTCTCAGCCCCTCTGGC	0.572									Congenital_Hereditary_Lymphedema				47	130					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180041160	180041160	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180041160C>T	uc003mma.3	-	24	3318	c.3239G>A	c.(3238-3240)TGG>TAG	p.W1080*	FLT4_uc003mlz.3_Nonsense_Mutation_p.W1080*	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1080	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	AGGGGCCATCCACTTCAGGGG	0.617									Congenital_Hereditary_Lymphedema				32	81					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180043925	180043925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180043925C>T	uc003mma.3	-	22	3150	c.3071G>A	c.(3070-3072)GGG>GAG	p.G1024E	FLT4_uc003mlz.3_Missense_Mutation_p.G1024E	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1024	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GAACTCCATCCCTCTGGCCAC	0.602									Congenital_Hereditary_Lymphedema				26	70					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180053204	180053204	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180053204C>T	uc003mma.3	-	9	1244	c.1165G>A	c.(1165-1167)GTG>ATG	p.V389M	FLT4_uc003mlz.3_Missense_Mutation_p.V389M|FLT4_uc003mmb.1_Translation_Start_Site|FLT4_uc011dgy.1_Missense_Mutation_p.V389M	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	389	Ig-like C2-type 4.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GCCTCTGTCACCTCCTTGAGC	0.627									Congenital_Hereditary_Lymphedema				37	80					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180056393	180056393	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180056393G>A	uc003mma.3	-	7	930	c.851C>T	c.(850-852)TCC>TTC	p.S284F	FLT4_uc003mlz.3_Missense_Mutation_p.S284F|FLT4_uc003mmb.1_5'UTR|FLT4_uc011dgy.1_Missense_Mutation_p.S284F|FLT4_uc011dgz.1_Intron	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	284	Ig-like C2-type 3.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GGTCTGCTGGGAGCGTCGCTC	0.657									Congenital_Hereditary_Lymphedema				20	35					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180056987	180056987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180056987C>T	uc003mma.3	-	5	711	c.632G>A	c.(631-633)GGA>GAA	p.G211E	FLT4_uc003mlz.3_Missense_Mutation_p.G211E|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Missense_Mutation_p.G211E|FLT4_uc011dgz.1_Missense_Mutation_p.G211E|FLT4_uc011dha.1_Missense_Mutation_p.E195K	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	211	Ig-like C2-type 2.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GTCCTGGTCTCCCCAGGTGGT	0.642									Congenital_Hereditary_Lymphedema				25	36					0	0	1	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166987	180166987	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180166987C>T	uc003mmf.1	-	1	72	c.72G>A	c.(70-72)GAG>GAA	p.E24E		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACAGGATGGGCTCCAGTTGCG	0.473													11	32					0	0	1	0	0
BTNL8	79908	broad.mit.edu	37	5	180335746	180335746	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180335746G>A	uc003mmp.2	+	2	444	c.210G>A	c.(208-210)GGG>GGA	p.G70G	BTNL8_uc003mmq.2_Silent_p.G70G|BTNL8_uc011dhg.1_Intron|BTNL8_uc010jll.2_Silent_p.G70G|BTNL8_uc010jlm.2_Intron|BTNL8_uc011dhh.1_5'Flank	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	70	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACAGGGACGGGAAGGACCAGC	0.532													65	116					0	0	1	0	0
BTNL8	79908	broad.mit.edu	37	5	180338371	180338372	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180338371_180338372GG>AA	uc003mmp.2	+	3	664_665	c.430_431GG>AA	c.(430-432)GGA>AAA	p.G144K	BTNL8_uc003mmq.2_Missense_Mutation_p.G144K|BTNL8_uc011dhg.1_Missense_Mutation_p.G19K|BTNL8_uc010jll.2_Missense_Mutation_p.G144K|BTNL8_uc010jlm.2_Missense_Mutation_p.G28K|BTNL8_uc011dhh.1_5'UTR	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	144	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTCCATCACGGGATATGTTGAT	0.525													38	404					0	0	1	0	0
BTNL3	10917	broad.mit.edu	37	5	180432565	180432565	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180432565G>A	uc003mmr.2	+	8	1222	c.1094G>A	c.(1093-1095)GGG>GAG	p.G365E	BTNL3_uc010jlp.2_Missense_Mutation_p.G150E	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	365	B30.2/SPRY.|Cytoplasmic (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			GTAGACAGGGGGAAGAACAAT	0.478													18	60					0	0	1	0	0
BTNL3	10917	broad.mit.edu	37	5	180432608	180432608	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180432608C>T	uc003mmr.2	+	8	1265	c.1137C>T	c.(1135-1137)GTC>GTT	p.V379V	BTNL3_uc010jlp.2_Silent_p.V164V	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	379	B30.2/SPRY.|Cytoplasmic (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			GGTATTGGGTCCTCAGACTGA	0.502													14	57					0	0	1	0	0
OR2V2	285659	broad.mit.edu	37	5	180582494	180582494	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180582494C>T	uc011dhj.1	+	1	552	c.552C>T	c.(550-552)TCC>TCT	p.S184S		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGATGCTATCCTTGTTGAAGC	0.463													54	231					0	0	1	0	0
OR2V2	285659	broad.mit.edu	37	5	180582584	180582584	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180582584C>T	uc011dhj.1	+	1	642	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CATTCTCCATCATCGTGGCCT	0.517													27	205					0	0	1	0	0
TRIM7	81786	broad.mit.edu	37	5	180625718	180625718	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr5:180625718G>T	uc003mmz.1	-	5	1027	c.960C>A	c.(958-960)GTC>GTA	p.V320V	TRIM7_uc003mmv.1_Silent_p.V138V|TRIM7_uc003mmw.1_Silent_p.V112V|TRIM7_uc003mmx.1_Silent_p.V112V|TRIM7_uc003mmy.1_Silent_p.V112V	NM_203293	NP_976038	Q9C029	TRIM7_HUMAN	tripartite motif-containing 7 isoform 1	320						cytoplasm|nucleus	zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;6.03e-06)|all_epithelial(37;7.1e-07)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000172)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;2e-06)|Epithelial(171;1.35e-05)|OV - Ovarian serous cystadenocarcinoma(192;0.000128)|Kidney(146;0.0674)|GBM - Glioblastoma multiforme(465;0.0802)		TCCCTTTTAAGACAAAGGTCT	0.537													12	53					6.72482e-11	6.74848e-11	1	1	0
EXOC2	55770	broad.mit.edu	37	6	488989	488989	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:488989C>T	uc003mtd.2	-	27	2805	c.2671G>A	c.(2671-2673)GCA>ACA	p.A891T	EXOC2_uc003mte.2_Missense_Mutation_p.A891T|EXOC2_uc011dho.1_Missense_Mutation_p.A486T	NM_018303	NP_060773	Q96KP1	EXOC2_HUMAN	Sec5 protein	891					exocytosis|protein transport					breast(4)|ovary(2)|pancreas(1)	7	Ovarian(93;0.0733)	Breast(5;0.0014)|all_lung(73;0.0697)|all_hematologic(90;0.0897)		OV - Ovarian serous cystadenocarcinoma(45;0.0507)|BRCA - Breast invasive adenocarcinoma(62;0.14)		TTTTTATCTGCTCCACTGGAA	0.428													76	174					0	0	1	0	0
EXOC2	55770	broad.mit.edu	37	6	629880	629880	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:629880G>A	uc003mtd.2	-	4	511	c.377C>T	c.(376-378)CCC>CTC	p.P126L	EXOC2_uc003mte.2_Missense_Mutation_p.P126L|EXOC2_uc011dho.1_Intron	NM_018303	NP_060773	Q96KP1	EXOC2_HUMAN	Sec5 protein	126					exocytosis|protein transport					breast(4)|ovary(2)|pancreas(1)	7	Ovarian(93;0.0733)	Breast(5;0.0014)|all_lung(73;0.0697)|all_hematologic(90;0.0897)		OV - Ovarian serous cystadenocarcinoma(45;0.0507)|BRCA - Breast invasive adenocarcinoma(62;0.14)		TAAGGACAAGGGCGGAATTCC	0.408													26	91					0	0	1	0	0
C6orf195	154386	broad.mit.edu	37	6	2624022	2624022	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:2624022G>A	uc003mtw.2	-	3	1020	c.35C>T	c.(34-36)CCC>CTC	p.P12L		NM_152554	NP_689767	Q96MT4	CF195_HUMAN	hypothetical protein LOC154386	12											0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				CTGCTTCCAGGGAATGTTCCT	0.507													13	53					0	0	1	0	0
SERPINB9	5272	broad.mit.edu	37	6	2890665	2890665	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:2890665C>T	uc003mug.2	-	7	984	c.863G>A	c.(862-864)GGA>GAA	p.G288E	uc003mue.2_Intron|SERPINB9_uc003muf.2_Missense_Mutation_p.G91E	NM_004155	NP_004146	P50453	SPB9_HUMAN	serpin peptidase inhibitor, clade B, member 9	288					anti-apoptosis|cellular response to estrogen stimulus|immune response|mast cell mediated immunity|regulation of proteolysis	cytosol|extracellular space|nucleus	caspase inhibitor activity|protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.108)				ATCAACAATTCCCAAATGCCG	0.463													37	111					0	0	1	0	0
SERPINB9	5272	broad.mit.edu	37	6	2893767	2893767	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:2893767G>A	uc003mug.2	-	5	566	c.445C>T	c.(445-447)CCG>TCG	p.P149S	uc003mue.2_Intron|SERPINB9_uc003muf.2_5'Flank	NM_004155	NP_004146	P50453	SPB9_HUMAN	serpin peptidase inhibitor, clade B, member 9	149					anti-apoptosis|cellular response to estrogen stimulus|immune response|mast cell mediated immunity|regulation of proteolysis	cytosol|extracellular space|nucleus	caspase inhibitor activity|protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.108)				GAGCTACCCGGCAACAACTCT	0.398													41	102					0	0	1	0	0
SERPINB9	5272	broad.mit.edu	37	6	2900696	2900696	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:2900696G>A	uc003mug.2	-	2	271	c.150C>T	c.(148-150)ACC>ACT	p.T50T	uc003mue.2_Intron|SERPINB9_uc003muh.2_Silent_p.T50T	NM_004155	NP_004146	P50453	SPB9_HUMAN	serpin peptidase inhibitor, clade B, member 9	50					anti-apoptosis|cellular response to estrogen stimulus|immune response|mast cell mediated immunity|regulation of proteolysis	cytosol|extracellular space|nucleus	caspase inhibitor activity|protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.108)				TCTGGGTTGCGGTGTTTCCCT	0.582													67	130					0	0	1	0	0
FAM50B	26240	broad.mit.edu	37	6	3850651	3850651	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:3850651G>A	uc003mvu.2	+	2	718	c.606G>A	c.(604-606)CGG>CGA	p.R202R		NM_012135	NP_036267	Q9Y247	FA50B_HUMAN	family with sequence similarity 50, member B	202						nucleus				pancreas(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				GCACGGTGCGGGTGCGCAAGG	0.672													36	54					0	0	1	0	0
C6orf146	222826	broad.mit.edu	37	6	4069536	4069536	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:4069536T>G	uc003mvx.2	-	7	1261	c.921A>C	c.(919-921)AGA>AGC	p.R307S	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Missense_Mutation_p.R244S	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	307										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TCGTTTGTAGTCTTGGCCTCT	0.433													40	85					0	0	1	0	0
C6orf146	222826	broad.mit.edu	37	6	4069751	4069751	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:4069751C>T	uc003mvx.2	-	7	1046	c.706G>A	c.(706-708)GAA>AAA	p.E236K	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Missense_Mutation_p.E173K	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	236										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				GTGAAAGGTTCCTCAACATTT	0.378													47	114					0	0	1	0	0
C6orf146	222826	broad.mit.edu	37	6	4073527	4073527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:4073527C>T	uc003mvx.2	-	6	624	c.284G>A	c.(283-285)GGA>GAA	p.G95E	C6orf146_uc010jnq.1_RNA|C6orf146_uc003mvy.2_Missense_Mutation_p.G32E	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	95										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TATGGTACTTCCTTCATTAAG	0.299													8	106					0	0	1	0	0
C6orf201	404220	broad.mit.edu	37	6	4087912	4087912	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:4087912C>T	uc003mwa.3	+	2	805	c.37C>T	c.(37-39)CTG>TTG	p.L13L	C6orf146_uc010jnq.1_5'Flank|C6orf146_uc003mvy.2_5'Flank|C6orf201_uc003mvz.3_Intron|C6orf201_uc011dhw.1_Silent_p.L13L|C6orf201_uc003mwb.3_RNA	NM_001085401	NP_001078870	Q7Z4U5	CF201_HUMAN	hypothetical protein LOC404220	13											0	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				TCCGAATCACCTGATGGAGAC	0.488													127	279					0	0	1	0	0
NRN1	51299	broad.mit.edu	37	6	6006945	6006945	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6006945A>C	uc003mwu.2	-	1	689	c.38T>G	c.(37-39)ATC>AGC	p.I13S	NRN1_uc003mwt.2_5'Flank	NM_016588	NP_057672	Q9NPD7	NRN1_HUMAN	neuritin precursor	13						anchored to membrane|plasma membrane					0	Ovarian(93;0.0816)	all_hematologic(90;0.151)		OV - Ovarian serous cystadenocarcinoma(45;0.00415)		CACCGCGAGGATCAGTGAAAT	0.577													42	97					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6174838	6174838	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6174838G>A	uc003mwv.2	-	12	1845	c.1722C>T	c.(1720-1722)TTC>TTT	p.F574F	F13A1_uc011dib.1_Silent_p.F511F	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	574					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GCGTCACGTCGAACGTCTCCT	0.522													57	147					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6174883	6174883	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6174883G>A	uc003mwv.2	-	12	1800	c.1677C>T	c.(1675-1677)ACC>ACT	p.T559T	F13A1_uc011dib.1_Silent_p.T496T	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	559					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	CGGTGTAGAAGGTGATGTTGG	0.502													20	151					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6174985	6174985	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6174985C>T	uc003mwv.2	-	12	1698	c.1575G>A	c.(1573-1575)GTG>GTA	p.V525V	F13A1_uc011dib.1_Silent_p.V462V	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	525					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	CAGCATTTTCCACTTCAAAGT	0.478													24	42					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6175052	6175052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6175052G>A	uc003mwv.2	-	12	1631	c.1508C>T	c.(1507-1509)GCT>GTT	p.A503V	F13A1_uc011dib.1_Missense_Mutation_p.A440V	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	503					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GGGCTTTTTAGCTCCGTACAT	0.463													16	54					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6222303	6222303	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6222303C>T	uc003mwv.2	-	8	1198	c.1075G>A	c.(1075-1077)GGG>AGG	p.G359R	F13A1_uc011dib.1_Missense_Mutation_p.G296R	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	359					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TTCACGTTCCCATCTTCTTCC	0.393													20	48					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6266847	6266847	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6266847C>T	uc003mwv.2	-	4	638	c.515G>A	c.(514-516)CGA>CAA	p.R172Q	F13A1_uc011dib.1_Missense_Mutation_p.R109Q	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	172					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity	p.R172Q(1)		ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TCGACTGGTTCGAAGTACGCC	0.458													55	110					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6267018	6267018	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6267018C>T	uc003mwv.2	-	4	467	c.344G>A	c.(343-345)GGA>GAA	p.G115E	F13A1_uc011dib.1_Missense_Mutation_p.G52E	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	115					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GATGTAGGTTCCCTTGTTCTC	0.463													59	124					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6305701	6305701	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6305701C>T	uc003mwv.2	-	3	325	c.202G>A	c.(202-204)GAC>AAC	p.D68N	F13A1_uc011dib.1_Intron	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	68					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TCATACTTGTCAGTGTGGTGG	0.453													14	62					0	0	1	0	0
LY86	9450	broad.mit.edu	37	6	6649878	6649878	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:6649878C>T	uc003mwy.1	+	4	407	c.373C>T	c.(373-375)CCT>TCT	p.P125S	LY86_uc003mwz.1_RNA	NM_004271	NP_004262	O95711	LY86_HUMAN	MD-1, RP105-associated precursor	125					apoptosis|cell proliferation|humoral immune response|inflammatory response|innate immune response	extracellular space|plasma membrane					0	Ovarian(93;0.0377)					CTATGCTGGGCCTGTCAATAA	0.244													28	57					0	0	1	0	0
RREB1	6239	broad.mit.edu	37	6	7230365	7230365	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7230365A>C	uc003mxc.2	+	10	2423	c.2033A>C	c.(2032-2034)TAC>TCC	p.Y678S	RREB1_uc003mxb.2_Missense_Mutation_p.Y678S|RREB1_uc010jnx.2_Missense_Mutation_p.Y678S	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	678	C2H2-type 8.				multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				ATCTGCGACTACATCGCCGCC	0.622													8	60					0	0	1	0	0
RREB1	6239	broad.mit.edu	37	6	7231040	7231040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7231040C>T	uc003mxc.2	+	10	3098	c.2708C>T	c.(2707-2709)TCG>TTG	p.S903L	RREB1_uc003mxb.2_Missense_Mutation_p.S903L|RREB1_uc010jnx.2_Missense_Mutation_p.S903L	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	903					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CTGGACTTCTCGCAGAAGGGC	0.597													33	79					0	0	1	0	0
CAGE1	285782	broad.mit.edu	37	6	7373425	7373425	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7373425C>T	uc003mxi.2	-	4	1940	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.E298K|CAGE1_uc003mxk.1_Missense_Mutation_p.E298K	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	543	Potential.										0	Ovarian(93;0.0418)					TTTGCATTCTCATTTTTTACT	0.333													4	45					0	0	1	0	0
CAGE1	285782	broad.mit.edu	37	6	7374329	7374329	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7374329C>T	uc003mxi.2	-	4	1036	c.315G>A	c.(313-315)GGG>GGA	p.G105G	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_5'UTR|CAGE1_uc003mxk.1_5'UTR	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	241											0	Ovarian(93;0.0418)					CAGGAATCTCCCCATAATTCT	0.328													33	125					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7563999	7563999	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7563999G>A	uc003mxp.1	+	6	1036	c.757G>A	c.(757-759)GAG>AAG	p.E253K	DSP_uc003mxq.1_Missense_Mutation_p.E253K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	253	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CCAGTTGGAGGAGGAGTATGA	0.398													25	73					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7565753	7565753	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7565753C>T	uc003mxp.1	+	7	1218	c.939C>T	c.(937-939)TCC>TCT	p.S313S	DSP_uc003mxq.1_Silent_p.S313S	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	313	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGGCCTTCTCCGTAAGTTCAC	0.517													15	45					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7569464	7569464	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7569464G>A	uc003mxp.1	+	12	1744	c.1465G>A	c.(1465-1467)GAG>AAG	p.E489K	DSP_uc003mxq.1_Missense_Mutation_p.E489K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	489	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GGACAACAACGAGCGCAGCAA	0.527													39	98					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7569539	7569539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7569539C>T	uc003mxp.1	+	12	1819	c.1540C>T	c.(1540-1542)CCT>TCT	p.P514S	DSP_uc003mxq.1_Missense_Mutation_p.P514S	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	514	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GATCATCCCTCCTCCGAACCC	0.577													25	96					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7571684	7571684	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7571684C>T	uc003mxp.1	+	14	2049	c.1770C>T	c.(1768-1770)TTC>TTT	p.F590F	DSP_uc003mxq.1_Silent_p.F590F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	590	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACCAAGAGTTCATCAGAAATA	0.458													30	266					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7571715	7571715	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7571715G>A	uc003mxp.1	+	14	2080	c.1801G>A	c.(1801-1803)GGA>AGA	p.G601R	DSP_uc003mxq.1_Missense_Mutation_p.G601R	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	601	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGAGATGTTTGGAGATGATGA	0.483													28	216					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7576563	7576563	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7576563G>A	uc003mxp.1	+	19	2946	c.2667G>A	c.(2665-2667)AGG>AGA	p.R889R	DSP_uc003mxq.1_Silent_p.R889R	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	889	Globular 1.|Spectrin 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGCAATTGAGGAATTATCGTG	0.343													32	71					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7580655	7580655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7580655G>A	uc003mxp.1	+	23	4511	c.4232G>A	c.(4231-4233)AGG>AAG	p.R1411K	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1411	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAAATAAAGAGGCTGAAGAAC	0.498													32	52					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7580705	7580705	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7580705G>A	uc003mxp.1	+	23	4561	c.4282G>A	c.(4282-4284)GAA>AAA	p.E1428K	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1428	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAGGGTGGAAGAAGACATCCA	0.488													19	59					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7581370	7581370	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7581370G>A	uc003mxp.1	+	23	5226	c.4947G>A	c.(4945-4947)AGG>AGA	p.R1649R	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1649	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AAAAGCAGAGGACCCAGGAAG	0.572													35	73					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7581550	7581550	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7581550C>T	uc003mxp.1	+	23	5406	c.5127C>T	c.(5125-5127)CTC>CTT	p.L1709L	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1709	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TGCAGTCTCTCACAGAGAACC	0.463													18	125					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7581641	7581641	+	Missense_Mutation	SNP	G	A	A	rs142885240	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7581641G>A	uc003mxp.1	+	23	5497	c.5218G>A	c.(5218-5220)GAA>AAA	p.E1740K	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1740	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGGACGAAGCGAAGCGGACAG	0.507													46	133					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7582885	7582885	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7582885G>A	uc003mxp.1	+	24	5669	c.5390G>A	c.(5389-5391)AGG>AAG	p.R1797K	DSP_uc003mxq.1_Missense_Mutation_p.R1198K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1797	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GCATCTAATAGGATTCAGGAA	0.373													28	75					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7584496	7584496	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7584496G>A	uc003mxp.1	+	24	7280	c.7001G>A	c.(7000-7002)CGA>CAA	p.R2334Q	DSP_uc003mxq.1_Missense_Mutation_p.R1735Q	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2334	Plectin 9.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TCTGCAGAACGAGCTGTCACT	0.463													21	56					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7584536	7584536	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7584536C>T	uc003mxp.1	+	24	7320	c.7041C>T	c.(7039-7041)ATC>ATT	p.I2347I	DSP_uc003mxq.1_Silent_p.I1748I	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2347	Plectin 9.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CAGGAAACATCATCTCTTTGT	0.473													15	68					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7584837	7584837	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7584837G>A	uc003mxp.1	+	24	7621	c.7342G>A	c.(7342-7344)GAA>AAA	p.E2448K	DSP_uc003mxq.1_Missense_Mutation_p.E1849K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2448	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GCCTCTGAAAGAAAAGAAGAA	0.403													38	87					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7585343	7585343	+	Silent	SNP	G	A	A	rs148798300		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7585343G>A	uc003mxp.1	+	24	8127	c.7848G>A	c.(7846-7848)TCG>TCA	p.S2616S	DSP_uc003mxq.1_Silent_p.S2017S	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2616	Plectin 14.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TGGAAGAATCGAGCCCCATTG	0.483													46	94					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7585536	7585536	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7585536G>A	uc003mxp.1	+	24	8320	c.8041G>A	c.(8041-8043)GAC>AAC	p.D2681N	DSP_uc003mxq.1_Missense_Mutation_p.D2082N	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2681	Globular 2.|Plectin 15.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GGGTGTGATTGACCAAGACAT	0.567													59	154					0	0	1	0	0
BMP6	654	broad.mit.edu	37	6	7727852	7727852	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7727852G>A	uc003mxu.3	+	1	842	c.664G>A	c.(664-666)GTG>ATG	p.V222M		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	222					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					TGTGAACCTGGGTAAGGATTT	0.647													7	25					0	0	1	0	0
BMP6	654	broad.mit.edu	37	6	7845399	7845399	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7845399C>T	uc003mxu.3	+	2	869	c.691C>T	c.(691-693)CGT>TGT	p.R231C		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	231					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					GTTCTCCCCTCGTCAGCGACA	0.468													33	105					0	0	1	0	0
BMP6	654	broad.mit.edu	37	6	7862555	7862555	+	Missense_Mutation	SNP	C	T	T	rs150526011	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7862555C>T	uc003mxu.3	+	4	1206	c.1028C>T	c.(1027-1029)GCC>GTC	p.A343V		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	343			A -> D (in a colorectal cancer sample; somatic mutation).		BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity	p.A343D(1)		large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					CACCCCCGAGCCGCAGGCCTG	0.532													55	134					0	0	1	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7987514	7987514	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:7987514G>A	uc003mxx.3	+	1	1180	c.745G>A	c.(745-747)GGC>AGC	p.G249S	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						TGACCTCAAAGGCTCAACCTA	0.438													10	66					0	0	1	0	0
SLC35B3	51000	broad.mit.edu	37	6	8422706	8422706	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:8422706G>A	uc010joe.2	-	5	737	c.571C>T	c.(571-573)CAA>TAA	p.Q191*	SLC35B3_uc003mya.2_Nonsense_Mutation_p.Q159*|SLC35B3_uc003myc.2_Intron|SLC35B3_uc003myb.2_Nonsense_Mutation_p.Q191*|SLC35B3_uc011did.1_Nonsense_Mutation_p.Q191*|SLC35B3_uc003myd.2_RNA	NM_001142541	NP_001136013	Q9H1N7	S35B3_HUMAN	solute carrier family 35, member B3	191					transmembrane transport	Golgi membrane|integral to membrane					0	Ovarian(93;0.0569)					ACTATACCTTGAATAAAAACT	0.333													12	54					0	0	1	0	0
Unknown	0	broad.mit.edu	37	6	9933535	9933535	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:9933535G>A	uc003myg.1	-	1		c.7C>T			uc010jog.1_5'UTR|uc003myh.1_Nonsense_Mutation_p.Q7*|uc003myj.1_Nonsense_Mutation_p.Q7*|uc003myk.1_RNA|uc003myn.2_Nonsense_Mutation_p.Q7*|uc010joi.1_Nonsense_Mutation_p.Q75*|uc010joh.1_RNA|uc011dif.1_Nonsense_Mutation_p.Q7*|uc011dig.1_Nonsense_Mutation_p.Q7*					Homo sapiens clone 958LR MRDS1 protein (MRDS1) mRNA, complete cds.																		GCCTTCTGCTGAAACTTCTGG	0.363													17	66					0	0	1	0	0
TFAP2A	7020	broad.mit.edu	37	6	10410431	10410431	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:10410431G>A	uc003myr.2	-	2	435	c.183C>T	c.(181-183)CCC>CCT	p.P61P	TFAP2A_uc003myq.2_Silent_p.P55P|TFAP2A_uc003mys.2_Intron|TFAP2A_uc011dih.1_Silent_p.P61P|TFAP2A_uc003myt.2_Silent_p.P57P|TFAP2A_uc003myu.1_Silent_p.P61P|TFAP2A_uc003myv.1_Silent_p.P47P|TFAP2A_uc011dii.1_Silent_p.P57P|uc003myw.2_5'Flank	NM_003220	NP_003211	P05549	AP2A_HUMAN	transcription factor AP-2 alpha isoform a	61	WW-binding.|Gln/Pro-rich (transactivation domain).				ectoderm development|positive regulation of bone mineralization|positive regulation of tooth mineralization|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	centrosome|Golgi apparatus|nucleus	chromatin binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding			ovary(1)	1	Breast(50;0.0427)|Ovarian(93;0.0991)	all_hematologic(90;0.107)				TAGGCTGGTAGGGTGGGGGGA	0.657													15	39					0	0	1	0	0
MAK	4117	broad.mit.edu	37	6	10796537	10796537	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:10796537C>T	uc003mzl.2	-	8	1066	c.837G>A	c.(835-837)TTG>TTA	p.L279L	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Silent_p.L279L|MAK_uc010jov.1_RNA	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	279	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				ATGGGTGTTTCAATGCCTATA	0.373													15	63					0	0	1	0	0
GCM2	9247	broad.mit.edu	37	6	10876198	10876198	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:10876198C>T	uc003mzn.3	-	4	580	c.508G>A	c.(508-510)GCT>ACT	p.A170T	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	170	GCM.				cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				CTTCTTCTAGCTTCTGTCTCT	0.453													32	83					0	0	1	0	0
GCM2	9247	broad.mit.edu	37	6	10876690	10876690	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:10876690C>T	uc003mzn.3	-	3	516	c.444G>A	c.(442-444)GCG>GCA	p.A148A	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	148	GCM.				cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				GAAAAAAGATCGCGTTGCCAT	0.498													14	47					0	0	1	0	0
SYCP2L	221711	broad.mit.edu	37	6	10894144	10894144	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:10894144G>A	uc003mzo.2	+	3	419	c.123G>A	c.(121-123)CAG>CAA	p.Q41Q	SYCP2L_uc011dim.1_RNA	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	41						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			AAGGATTTCAGAAAATAAAAG	0.308													4	30					0	0	1	0	0
SYCP2L	221711	broad.mit.edu	37	6	10927488	10927488	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:10927488C>T	uc003mzo.2	+	17	1624	c.1328C>T	c.(1327-1329)TCC>TTC	p.S443F	SYCP2L_uc011din.1_Intron|SYCP2L_uc010jow.2_Missense_Mutation_p.S63F	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	443						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			GCAGAAGAATCCACTAACATG	0.403													20	68					0	0	1	0	0
ELOVL2	54898	broad.mit.edu	37	6	10995328	10995328	+	Silent	SNP	C	T	T	rs141887901		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:10995328C>T	uc003mzp.3	-	5	578	c.417G>A	c.(415-417)ACG>ACA	p.T139T		NM_017770	NP_060240	Q9NXB9	ELOV2_HUMAN	elongation of very long chain fatty acids-like	139					fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0	Breast(50;0.0418)|Ovarian(93;0.0919)	all_hematologic(90;0.117)	Epithelial(50;0.176)			TAATCTGACTCGTTTTTTTCC	0.358													49	110					0	0	1	0	0
ERVFRDE1	405754	broad.mit.edu	37	6	11104936	11104936	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:11104936C>T	uc003mzt.2	-	2	978	c.608G>A	c.(607-609)CGA>CAA	p.R203Q	LOC221710_uc003mzr.2_Intron|LOC221710_uc011dio.1_Intron	NM_207582	NP_997465	P60508	EFRD1_HUMAN	syncytin 2	203	Extracellular (Potential).					integral to membrane|plasma membrane|virion					0						CCAGAAGTTTCGAGTACTGCA	0.443													55	126					0	0	1	0	0
NEDD9	4739	broad.mit.edu	37	6	11191312	11191312	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:11191312G>A	uc003mzv.2	-	5	957	c.790C>T	c.(790-792)CCT>TCT	p.P264S	NEDD9_uc010joz.2_Missense_Mutation_p.P264S|NEDD9_uc003mzw.3_Missense_Mutation_p.P118S	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	264					actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			CAGGTTGGAGGAATGTCATAA	0.557													19	85					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12121044	12121044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:12121044C>T	uc003nac.2	+	4	1195	c.1016C>T	c.(1015-1017)CCT>CTT	p.P339L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	339					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CTAACTTCACCTTCCAGTAGA	0.433													65	143					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12122504	12122504	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:12122504C>T	uc003nac.2	+	4	2655	c.2476C>T	c.(2476-2478)CTG>TTG	p.L826L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	826					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				AGTGTTTCTTCTGTCTGTACC	0.418													64	133					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12123311	12123311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:12123311C>T	uc003nac.2	+	4	3462	c.3283C>T	c.(3283-3285)CTT>TTT	p.L1095F	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1095					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CCATATTCACCTTGTTGCCAG	0.463													10	50					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12125274	12125274	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:12125274C>T	uc003nac.2	+	4	5425	c.5246C>T	c.(5245-5247)TCC>TTC	p.S1749F	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1749					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				AGGATGCTTTCCCCAGCAAAT	0.433													14	85					0	0	1	0	0
EDN1	1906	broad.mit.edu	37	6	12294197	12294197	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:12294197G>A	uc003nae.3	+	3	591	c.257G>A	c.(256-258)GGA>GAA	p.G86E	EDN1_uc003nad.2_Missense_Mutation_p.G86E|EDN1_uc003naf.3_Missense_Mutation_p.G85E	NM_001955	NP_001946	P05305	EDN1_HUMAN	endothelin 1 precursor	86					artery smooth muscle contraction|calcium-mediated signaling|leukocyte activation|negative regulation of blood coagulation|negative regulation of cellular protein metabolic process|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of transcription from RNA polymerase II promoter|nitric oxide transport|peptide hormone secretion|phosphatidylinositol 3-kinase cascade|positive regulation of cardiac muscle hypertrophy|positive regulation of cell size|positive regulation of endothelial cell migration|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of JUN kinase activity|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of sarcomere organization|positive regulation of smooth muscle cell proliferation|prostaglandin biosynthetic process|protein kinase C deactivation|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	cytoplasm|extracellular space	cytokine activity|endothelin A receptor binding|endothelin B receptor binding|hormone activity			skin(1)	1	all_cancers(95;0.241)|Breast(50;0.0266)|Ovarian(93;0.12)	all_hematologic(90;0.117)				TATGGACTTGGAAGCCCTAGG	0.408													14	55					0	0	1	0	0
PHACTR1	221692	broad.mit.edu	37	6	13182884	13182884	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:13182884G>A	uc010jpc.2	+	7	962	c.630G>A	c.(628-630)GAG>GAA	p.E210E	PHACTR1_uc011dir.1_Silent_p.E210E|PHACTR1_uc003nag.1_Silent_p.E210E|PHACTR1_uc003nah.1_Silent_p.E210E	NM_030948	NP_112210	Q9C0D0	PHAR1_HUMAN	phosphatase and actin regulator 1	210						cell junction|cytoplasm|synapse	actin binding|protein phosphatase inhibitor activity				0	Breast(50;0.0427)|Ovarian(93;0.12)	all_hematologic(90;0.122)|Lung SC(78;0.195)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.239)			GCTCATATGAGGTGCTCCAAC	0.592													7	94					0	0	1	0	0
PHACTR1	221692	broad.mit.edu	37	6	13206217	13206217	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:13206217C>T	uc010jpc.2	+	8	1167	c.835C>T	c.(835-837)CTG>TTG	p.L279L	PHACTR1_uc011dir.1_Silent_p.L348L|PHACTR1_uc003nag.1_Silent_p.L279L|PHACTR1_uc003nah.1_Silent_p.L279L	NM_030948	NP_112210	Q9C0D0	PHAR1_HUMAN	phosphatase and actin regulator 1	279						cell junction|cytoplasm|synapse	actin binding|protein phosphatase inhibitor activity				0	Breast(50;0.0427)|Ovarian(93;0.12)	all_hematologic(90;0.122)|Lung SC(78;0.195)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.239)			CCACACTGTCCTGCCCTCCCA	0.662													29	57					0	0	1	0	0
GFOD1	54438	broad.mit.edu	37	6	13365806	13365806	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:13365806G>A	uc003nat.1	-	2	1007	c.342C>T	c.(340-342)CTC>CTT	p.L114L	GFOD1_uc003nas.1_Silent_p.L11L	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	114						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			TGATGCTCATGAGCTTGGGGT	0.652													49	114					0	0	1	0	0
SIRT5	23408	broad.mit.edu	37	6	13584380	13584380	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:13584380C>T	uc003nay.2	+	3	334	c.38C>T	c.(37-39)TCC>TTC	p.S13F	SIRT5_uc003naw.2_Missense_Mutation_p.S13F|SIRT5_uc003nax.2_5'UTR|SIRT5_uc011dit.1_Missense_Mutation_p.S13F	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1	13					chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	CGATTGATTTCCCAGCTATAT	0.453													45	103					0	0	1	0	0
SIRT5	23408	broad.mit.edu	37	6	13601076	13601076	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:13601076C>T	uc003nay.2	+	9	1048	c.752C>T	c.(751-753)TCC>TTC	p.S251F	SIRT5_uc003naw.2_Missense_Mutation_p.S251F|SIRT5_uc003nax.2_Missense_Mutation_p.S143F|SIRT5_uc011dit.1_Missense_Mutation_p.S233F	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1	251	Deacetylase sirtuin-type.				chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	GTGGGCACTTCCTCTGTGGTG	0.537													7	34					0	0	1	0	0
CCDC90A	63933	broad.mit.edu	37	6	13807255	13807255	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:13807255G>A	uc003nbd.2	-	2	565	c.437C>T	c.(436-438)TCC>TTC	p.S146F	CCDC90A_uc010jpf.2_RNA	NM_001031713	NP_001026883	Q96AQ8	CC90A_HUMAN	coiled-coil domain containing 90A precursor	146						integral to membrane|mitochondrion					0	Breast(50;0.0027)|Ovarian(93;0.0964)	all_hematologic(90;0.117)				CAGCTGCAGGGATCCAGCAGA	0.473													40	65					0	0	1	0	0
RNF182	221687	broad.mit.edu	37	6	13977612	13977612	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:13977612C>T	uc003nbe.2	+	3	680	c.262C>T	c.(262-264)CTT>TTT	p.L88F	RNF182_uc003nbf.2_Missense_Mutation_p.L88F|RNF182_uc003nbg.2_Missense_Mutation_p.L88F	NM_152737	NP_689950	Q8N6D2	RN182_HUMAN	ring finger protein 182	88						cytoplasm|integral to membrane|intracellular membrane-bounded organelle	protein binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Breast(50;0.00405)|Ovarian(93;0.0964)	all_hematologic(90;0.135)	Epithelial(50;0.195)			CAACAACATCCTTGTAAACTT	0.542													36	89					0	0	1	0	0
JARID2	3720	broad.mit.edu	37	6	15374430	15374430	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:15374430C>T	uc003nbj.2	+	2	372	c.128C>T	c.(127-129)TCC>TTC	p.S43F	JARID2_uc011diu.1_5'UTR|JARID2_uc011div.1_5'UTR	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	43					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				TTCAAGAATTCCCAGAAGAGG	0.443													65	131					0	0	1	0	0
JARID2	3720	broad.mit.edu	37	6	15410457	15410457	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:15410457C>T	uc003nbj.2	+	3	428	c.184C>T	c.(184-186)CTC>TTC	p.L62F	JARID2_uc011diu.1_5'UTR|JARID2_uc011div.1_5'UTR|JARID2_uc011diw.1_Missense_Mutation_p.L24F	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	62					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				ACCTGTAGGGCTCCTTGGTAA	0.463													33	82					0	0	1	0	0
JARID2	3720	broad.mit.edu	37	6	15452403	15452403	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:15452403C>T	uc003nbj.2	+	4	734	c.490C>T	c.(490-492)CGA>TGA	p.R164*	JARID2_uc011diu.1_Intron|JARID2_uc011div.1_5'UTR|JARID2_uc011diw.1_Nonsense_Mutation_p.R126*	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	164					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				TCTCTGCCTTCGAGGTAAGAC	0.468													11	89					0	0	1	0	0
JARID2	3720	broad.mit.edu	37	6	15487565	15487565	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:15487565G>A	uc003nbj.2	+	6	942	c.698G>A	c.(697-699)CGG>CAG	p.R233Q	JARID2_uc011diu.1_Missense_Mutation_p.R97Q|JARID2_uc011div.1_Missense_Mutation_p.R61Q|JARID2_uc011diw.1_Missense_Mutation_p.R195Q	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	233					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				AGGTCAACACGGGAGAAGGAA	0.473													15	40					0	0	1	0	0
JARID2	3720	broad.mit.edu	37	6	15497228	15497228	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:15497228C>T	uc003nbj.2	+	7	2016	c.1772C>T	c.(1771-1773)CCC>CTC	p.P591L	JARID2_uc011diu.1_Missense_Mutation_p.P455L|JARID2_uc011div.1_Missense_Mutation_p.P419L|JARID2_uc011diw.1_Missense_Mutation_p.P553L	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	591	JmjN.				central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				AGGGTGATCCCCCCTCCGGAC	0.642													4	26					0	0	1	0	0
MYLIP	29116	broad.mit.edu	37	6	16141939	16141939	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:16141939C>T	uc003nbq.2	+	3	599	c.362C>T	c.(361-363)GCC>GTC	p.A121V	MYLIP_uc003nbr.2_5'UTR	NM_013262	NP_037394	Q8WY64	MYLIP_HUMAN	myosin regulatory light chain interacting	121	FERM.				cellular component movement|nervous system development	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|ubiquitin-protein ligase activity|zinc ion binding			pancreas(1)	1	Breast(50;0.0799)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.241)			GAACTCAGTGCCCTCCTGGCC	0.537													34	69					0	0	1	0	0
ATXN1	6310	broad.mit.edu	37	6	16306646	16306646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:16306646C>T	uc003nbt.2	-	9	3333	c.2362G>A	c.(2362-2364)GAA>AAA	p.E788K	ATXN1_uc010jpi.2_Missense_Mutation_p.E788K|ATXN1_uc010jpj.1_RNA	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	788	Interaction with USP7.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				AAAGGTGGTTCGTCTTCTGAC	0.547													35	79					0	0	1	0	0
ATXN1	6310	broad.mit.edu	37	6	16327635	16327635	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:16327635G>A	uc003nbt.2	-	8	1878	c.907C>T	c.(907-909)CGG>TGG	p.R303W	ATXN1_uc010jpi.2_Missense_Mutation_p.R303W|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	303					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				GTGGCCTCCCGAGGGACAAAG	0.662													25	43					0	0	1	0	0
ATXN1	6310	broad.mit.edu	37	6	16328098	16328098	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:16328098G>A	uc003nbt.2	-	8	1415	c.444C>T	c.(442-444)ATC>ATT	p.I148I	ATXN1_uc010jpi.2_Silent_p.I148I|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	148					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CGGTTGGGGGGATCAGCTGTG	0.632													32	96					0	0	1	0	0
CAP2	10486	broad.mit.edu	37	6	17507491	17507491	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:17507491A>T	uc003ncb.2	+	5	635	c.392A>T	c.(391-393)AAT>ATT	p.N131I	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.N105I|CAP2_uc011djb.1_Missense_Mutation_p.N131I|CAP2_uc011djc.1_Intron|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	131					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			AACATGTTTAATCATCTTTCG	0.488													35	68					0	0	1	0	0
CAP2	10486	broad.mit.edu	37	6	17539531	17539531	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:17539531C>T	uc003ncb.2	+	8	911	c.668C>T	c.(667-669)TCT>TTT	p.S223F	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.S197F|CAP2_uc011djb.1_Missense_Mutation_p.S159F|CAP2_uc011djc.1_Missense_Mutation_p.S111F|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	223					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			TCAGCGTTTTCTGTCCTCTCC	0.552													77	145					0	0	1	0	0
CAP2	10486	broad.mit.edu	37	6	17539536	17539536	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:17539536C>T	uc003ncb.2	+	8	916	c.673C>T	c.(673-675)CTC>TTC	p.L225F	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.L199F|CAP2_uc011djb.1_Missense_Mutation_p.L161F|CAP2_uc011djc.1_Missense_Mutation_p.L113F|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	225					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			GTTTTCTGTCCTCTCCTCTGG	0.552													34	180					0	0	1	0	0
CAP2	10486	broad.mit.edu	37	6	17543308	17543308	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:17543308C>T	uc003ncb.2	+	11	1386	c.1143C>T	c.(1141-1143)CTC>CTT	p.L381L	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Silent_p.L355L|CAP2_uc011djb.1_Silent_p.L317L|CAP2_uc011djc.1_Silent_p.L269L|CAP2_uc011djd.1_Silent_p.L121L	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	381	C-CAP/cofactor C-like.				activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			GTAAAAAACTCGGCCTGGTGT	0.403													74	158					0	0	1	0	0
NUP153	9972	broad.mit.edu	37	6	17629689	17629689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:17629689G>A	uc003ncd.1	-	18	2941	c.2741C>T	c.(2740-2742)CCT>CTT	p.P914L	NUP153_uc011dje.1_Missense_Mutation_p.P945L|NUP153_uc010jpl.1_Missense_Mutation_p.P872L	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	914					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			AGTCTGAGAAGGCCCAGAAGA	0.413													38	93					0	0	1	0	0
NUP153	9972	broad.mit.edu	37	6	17675478	17675478	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:17675478G>A	uc003ncd.1	-	4	905	c.705C>T	c.(703-705)GCC>GCT	p.A235A	NUP153_uc011dje.1_Silent_p.A235A|NUP153_uc010jpl.1_Silent_p.A235A	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	235					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			GTGTTCCAAAGGCAGACAAGT	0.388													25	74					0	0	1	0	0
NUP153	9972	broad.mit.edu	37	6	17675575	17675575	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:17675575G>A	uc003ncd.1	-	4	808	c.608C>T	c.(607-609)TCA>TTA	p.S203L	NUP153_uc011dje.1_Missense_Mutation_p.S203L|NUP153_uc010jpl.1_Missense_Mutation_p.S203L	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	203					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			AGGTGGCAATGAAGTGTTCTT	0.368													30	56					0	0	1	0	0
KIF13A	63971	broad.mit.edu	37	6	17794534	17794534	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:17794534G>A	uc003ncg.3	-	25	3273	c.3168C>T	c.(3166-3168)ATC>ATT	p.I1056I	KIF13A_uc003ncf.2_Silent_p.I1056I|KIF13A_uc003nch.3_Silent_p.I1056I|KIF13A_uc003nci.3_Silent_p.I1056I	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1056					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TTACACAGCCGATGGATACTG	0.468													38	92					0	0	1	0	0
KIF13A	63971	broad.mit.edu	37	6	17809054	17809054	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:17809054G>A	uc003ncg.3	-	18	2213	c.2108C>T	c.(2107-2109)ACC>ATC	p.T703I	KIF13A_uc003ncf.2_Missense_Mutation_p.T703I|KIF13A_uc003nch.3_Missense_Mutation_p.T703I|KIF13A_uc003nci.3_Missense_Mutation_p.T703I	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	703	Potential.				cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TTGGTAATCGGTGAGTTTGCT	0.473													11	29					0	0	1	0	0
KDM1B	221656	broad.mit.edu	37	6	18160191	18160191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:18160191C>T	uc003ncn.1	+	3	306	c.65C>T	c.(64-66)CCT>CTT	p.P22L		NM_153042	NP_694587	Q8NB78	KDM1B_HUMAN	amine oxidase (flavin containing) domain 1	22					multicellular organismal development|regulation of DNA methylation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-monomethyl-K4 specific)|oxidoreductase activity|zinc ion binding			skin(1)	1						GATAGCCTTCCTTTGAGGAGC	0.284													16	32					0	0	1	0	0
E2F3	1871	broad.mit.edu	37	6	20490515	20490515	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:20490515C>T	uc003nda.2	+	7	1579	c.1252C>T	c.(1252-1254)CTA>TTA	p.L418L		NM_001949	NP_001940	O00716	E2F3_HUMAN	E2F transcription factor 3	418	Transactivation (Potential).				G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(95;0.154)|all_epithelial(95;0.0585)|Breast(50;0.146)|Ovarian(93;0.148)		OV - Ovarian serous cystadenocarcinoma(7;0.0068)|all cancers(50;0.0148)|Epithelial(50;0.0562)			TCCTTCCAACCTAGAAGGACC	0.527													28	79					0	0	1	0	0
HDGFL1	154150	broad.mit.edu	37	6	22570323	22570323	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:22570323G>A	uc003nds.2	+	1	646	c.519G>A	c.(517-519)GCG>GCA	p.A173A		NM_138574	NP_612641	Q5TGJ6	HDGL1_HUMAN	hepatoma derived growth factor-like 1	173	Ala-rich.|Glu-rich.										0	Ovarian(93;0.163)					Aggcggaggcggagagggcgg	0.498													3	3					0	0	1	0	0
HDGFL1	154150	broad.mit.edu	37	6	22570398	22570398	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:22570398C>T	uc003nds.2	+	1	721	c.594C>T	c.(592-594)CTC>CTT	p.L198L		NM_138574	NP_612641	Q5TGJ6	HDGL1_HUMAN	hepatoma derived growth factor-like 1	198	Glu-rich.			L -> P (in Ref. 1; BAB71292).							0	Ovarian(93;0.163)					GTCCGTTCCTCGTGGCGGTGG	0.488													3	6					0	0	1	0	0
NRSN1	140767	broad.mit.edu	37	6	24134672	24134672	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24134672C>T	uc010jpq.1	+	3	354	c.117C>T	c.(115-117)GCC>GCT	p.A39A		NM_080723	NP_542454	Q8IZ57	NRSN1_HUMAN	neurensin 1	39					nervous system development	growth cone|integral to membrane|neuronal cell body|transport vesicle					0						ACTGTACAGCCTCAATTTGGG	0.507													28	51					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24436904	24436904	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24436904C>T	uc003ned.1	-	22	2369	c.2258G>A	c.(2257-2259)GGA>GAA	p.G753E		NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	753	FG-GAP 6.					extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						GCCGTCTTCTCCCCCAATCAG	0.443													28	74					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24447200	24447200	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24447200C>T	uc003ned.1	-	18	1797	c.1686G>A	c.(1684-1686)CTG>CTA	p.L562L		NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	562						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						CCTCCACGTTCAGTTTTTCTA	0.453													24	72					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24448111	24448111	+	Missense_Mutation	SNP	C	T	T	rs146993893	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24448111C>T	uc003ned.1	-	17	1783	c.1672G>A	c.(1672-1674)GAC>AAC	p.D558N	GPLD1_uc010jpr.1_Missense_Mutation_p.D395N|GPLD1_uc010jps.1_Missense_Mutation_p.D558N	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	558	FG-GAP 3.					extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						CTACCTTTGTCGCTCAGGCTG	0.522													16	31					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24448182	24448182	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24448182G>A	uc003ned.1	-	17	1712	c.1601C>T	c.(1600-1602)TCC>TTC	p.S534F	GPLD1_uc010jpr.1_Missense_Mutation_p.S371F|GPLD1_uc010jps.1_Missense_Mutation_p.S534F	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	534	FG-GAP 3.			VIGS -> MLGT (in Ref. 6; AA sequence).		extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						TGCAAAAGGGGAGCCGATGAC	0.532													16	55					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24454270	24454270	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24454270C>T	uc003ned.1	-	14	1419	c.1308G>A	c.(1306-1308)GAG>GAA	p.E436E	GPLD1_uc010jpr.1_Silent_p.E273E|GPLD1_uc010jps.1_Silent_p.E436E	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	436	FG-GAP 2.					extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						TCCTGTGGGCCTCCTTGTCCA	0.567													29	85					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24460566	24460566	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24460566C>T	uc003ned.1	-	12	1060	c.949G>A	c.(949-951)GAC>AAC	p.D317N	GPLD1_uc010jpr.1_Missense_Mutation_p.D154N|GPLD1_uc010jps.1_Missense_Mutation_p.D317N	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	317						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						ATATTCCTGTCAACACTTTCA	0.373													18	184					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24473886	24473886	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24473886G>A	uc003ned.1	-	6	562	c.451C>T	c.(451-453)CAC>TAC	p.H151Y	GPLD1_uc010jpr.1_Intron|GPLD1_uc010jps.1_Missense_Mutation_p.H151Y|GPLD1_uc003nee.2_Missense_Mutation_p.H151Y	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	151						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						TAGGAGCCGTGAAAATCAATC	0.398													7	24					0	0	1	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24503662	24503662	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24503662G>A	uc003neg.2	+	3	637	c.609_splice	c.e3+1	p.P203_splice	ALDH5A1_uc003nef.2_Splice_Site_p.P203_splice	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor						acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	CATCACCCCGGTAGGTGACAG	0.562													17	40					0	0	1	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24533775	24533775	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24533775G>A	uc003neg.2	+	10	1471	c.1443G>A	c.(1441-1443)GTG>GTA	p.V481V	ALDH5A1_uc003nef.2_Silent_p.V494V	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	481					acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	TCTGGAGAGTGGCAGAGCAGC	0.488													32	97					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24559266	24559266	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24559266G>A	uc011djo.1	-	17	2946	c.2709C>T	c.(2707-2709)TTC>TTT	p.F903F	KIAA0319_uc011djp.1_Silent_p.F858F|KIAA0319_uc003neh.1_Silent_p.F903F|KIAA0319_uc011djq.1_Silent_p.F894F|KIAA0319_uc011djr.1_Silent_p.F903F|KIAA0319_uc010jpt.1_Silent_p.F314F	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	903	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						TCAAGACCTTGAAAAGCAAGA	0.453													7	18					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24563606	24563606	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24563606G>A	uc011djo.1	-	16	2809	c.2572C>T	c.(2572-2574)CGG>TGG	p.R858W	KIAA0319_uc011djp.1_Missense_Mutation_p.R813W|KIAA0319_uc003neh.1_Missense_Mutation_p.R858W|KIAA0319_uc011djq.1_Missense_Mutation_p.R849W|KIAA0319_uc011djr.1_Missense_Mutation_p.R858W|KIAA0319_uc010jpt.1_Missense_Mutation_p.R269W	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	858	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GAGTGGGCCCGAATCTTCTGG	0.567													18	39					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24576801	24576801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24576801C>T	uc011djo.1	-	10	1766	c.1529G>A	c.(1528-1530)GGA>GAA	p.G510E	KIAA0319_uc011djp.1_Missense_Mutation_p.G465E|KIAA0319_uc003neh.1_Missense_Mutation_p.G510E|KIAA0319_uc011djq.1_Missense_Mutation_p.G501E|KIAA0319_uc011djr.1_Missense_Mutation_p.G510E|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	510	PKD 2.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GTTAGTGGCTCCGTCCGAGTC	0.383													32	314					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24581180	24581181	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24581180_24581181CC>TT	uc011djo.1	-	7	1489_1490	c.1252_1253GG>AA	c.(1252-1254)GGA>AAA	p.G418K	KIAA0319_uc011djp.1_Missense_Mutation_p.G373K|KIAA0319_uc003neh.1_Missense_Mutation_p.G418K|KIAA0319_uc011djq.1_Missense_Mutation_p.G409K|KIAA0319_uc011djr.1_Missense_Mutation_p.G418K|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	418	PKD 1.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						ATTGACAAATCCTTCTCCAAAG	0.391											OREG0017229	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	139					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596346	24596346	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24596346C>T	uc011djo.1	-	3	793	c.556G>A	c.(556-558)GGC>AGC	p.G186S	KIAA0319_uc011djp.1_Missense_Mutation_p.G141S|KIAA0319_uc003neh.1_Missense_Mutation_p.G186S|KIAA0319_uc011djq.1_Missense_Mutation_p.G177S|KIAA0319_uc011djr.1_Missense_Mutation_p.G186S	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	186	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GGCAGTAGGCCCCAGTCCGTG	0.617													17	35					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596407	24596407	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24596407C>T	uc011djo.1	-	3	732	c.495G>A	c.(493-495)AAG>AAA	p.K165K	KIAA0319_uc011djp.1_Silent_p.K120K|KIAA0319_uc003neh.1_Silent_p.K165K|KIAA0319_uc011djq.1_Silent_p.K156K|KIAA0319_uc011djr.1_Silent_p.K165K	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	165	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GCAAGAGGTCCTTCTCCAGCT	0.577													22	52					0	0	1	0	0
TDP2	51567	broad.mit.edu	37	6	24667042	24667042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24667042C>T	uc003nej.2	-	1	74	c.49G>A	c.(49-51)GAG>AAG	p.E17K	TDP2_uc003nei.2_5'Flank|TDP2_uc010jpu.1_Missense_Mutation_p.E17K|ACOT13_uc010jpv.2_5'Flank|ACOT13_uc003nek.2_5'Flank	NM_016614	NP_057698	O95551	TYDP2_HUMAN	TRAF and TNF receptor-associated protein	17					cell surface receptor linked signaling pathway|double-strand break repair	PML body	5'-tyrosyl-DNA phosphodiesterase activity|magnesium ion binding|nuclease activity|protein binding|transcription corepressor activity			ovary(1)|lung(1)	2						GGCTCGCCCTCTTCCTCCGCC	0.647								Direct_reversal_of_damage|Editing_and_processing_nucleases					106	242					0	0	1	0	0
FAM65B	9750	broad.mit.edu	37	6	24848321	24848321	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24848321G>A	uc003neo.1	-	12	1185	c.1009C>T	c.(1009-1011)CAG>TAG	p.Q337*	FAM65B_uc011djs.1_Nonsense_Mutation_p.Q366*|FAM65B_uc011dju.1_Nonsense_Mutation_p.Q371*|FAM65B_uc003nep.2_Nonsense_Mutation_p.Q337*|FAM65B_uc011djt.1_Nonsense_Mutation_p.Q337*	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	337					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						ATTCTCCTCTGAAGGGCTGCT	0.517													15	23					0	0	1	0	0
FAM65B	9750	broad.mit.edu	37	6	24865551	24865551	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:24865551C>T	uc003neo.1	-	7	718	c.542G>A	c.(541-543)CGG>CAG	p.R181Q	FAM65B_uc011djs.1_Missense_Mutation_p.R210Q|FAM65B_uc011dju.1_Missense_Mutation_p.R215Q|FAM65B_uc003nep.2_Missense_Mutation_p.R181Q|FAM65B_uc011djt.1_Missense_Mutation_p.R181Q	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	181					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						CTTGAAGCTCCGATTGATCTC	0.522													28	59					0	0	1	0	0
LRRC16A	55604	broad.mit.edu	37	6	25610314	25610314	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25610314C>T	uc011djw.1	+	36	4260	c.3884C>T	c.(3883-3885)GCC>GTC	p.A1295V	LRRC16A_uc010jpx.2_Missense_Mutation_p.A1250V|LRRC16A_uc010jpy.2_Missense_Mutation_p.A1289V	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	1295					actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						CCGAAAGTTGCCCTTCTTCCA	0.478													55	151					0	0	1	0	0
LRRC16A	55604	broad.mit.edu	37	6	25610343	25610343	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25610343C>T	uc011djw.1	+	36	4289	c.3913C>T	c.(3913-3915)CCT>TCT	p.P1305S	LRRC16A_uc010jpx.2_Missense_Mutation_p.P1260S|LRRC16A_uc010jpy.2_Missense_Mutation_p.P1299S	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	1305					actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						GAAAAAAGTTCCTTCAGACAA	0.473													46	116					0	0	1	0	0
SCGN	10590	broad.mit.edu	37	6	25701497	25701497	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25701497G>A	uc003nfb.2	+	11	968	c.765G>A	c.(763-765)GTG>GTA	p.V255V	SCGN_uc010jpz.2_Silent_p.V146V	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	255	6 (Potential).|EF-hand 6.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						ACTGCGACGTGAACAAGGATG	0.488													27	94					0	0	1	0	0
HIST1H2BA	255626	broad.mit.edu	37	6	25727181	25727181	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25727181C>T	uc003nfd.2	+	1	45	c.45C>T	c.(43-45)GGC>GGT	p.G15G	HIST1H2AA_uc003nfc.2_5'Flank	NM_170610	NP_733759	Q96A08	H2B1A_HUMAN	histone cluster 1, H2ba	15					nucleosome assembly	nucleosome|nucleus	DNA binding			kidney(1)	1						CCAAGAAGGGCTTTAAGAAAG	0.453													30	77					0	0	1	0	0
SLC17A4	10050	broad.mit.edu	37	6	25769328	25769328	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25769328C>T	uc003nfe.2	+	3	326	c.207C>T	c.(205-207)GCC>GCT	p.A69A	SLC17A4_uc011djx.1_Silent_p.A69A|SLC17A4_uc003nff.1_Silent_p.A6A|SLC17A4_uc003nfg.2_Silent_p.A6A	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	69					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						ACAACACAGCCCCACCTAGCC	0.468													27	80					0	0	1	0	0
SLC17A4	10050	broad.mit.edu	37	6	25773505	25773505	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25773505G>A	uc003nfe.2	+	7	828	c.709G>A	c.(709-711)GGA>AGA	p.G237R	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Intron|SLC17A4_uc003nfg.2_Missense_Mutation_p.G174R|SLC17A4_uc010jqa.2_5'Flank	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	237	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						TTTCCTAGGAGGAATTGGCTG	0.443													45	94					0	0	1	0	0
SLC17A1	6568	broad.mit.edu	37	6	25811878	25811878	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25811878A>G	uc003nfh.3	-	9	1134	c.1018T>C	c.(1018-1020)TTC>CTC	p.F340L	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.F338L|SLC17A1_uc010jqc.1_Missense_Mutation_p.F284L	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	340	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						GCTGCTGTGAAGAGTTTCCGG	0.458													14	90					0	0	1	0	0
SLC17A1	6568	broad.mit.edu	37	6	25811976	25811976	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25811976G>A	uc003nfh.3	-	9	1036	c.920C>T	c.(919-921)CCC>CTC	p.P307L	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.P305L|SLC17A1_uc010jqc.1_Missense_Mutation_p.P251L	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	307	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						AAACAAATAGGGAAGGGAAGA	0.433													19	86					0	0	1	0	0
SLC17A3	10786	broad.mit.edu	37	6	25850805	25850805	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25850805C>T	uc003nfi.3	-	7	751	c.641G>A	c.(640-642)AGA>AAA	p.R214K	SLC17A3_uc003nfk.3_Missense_Mutation_p.R292K|SLC17A3_uc011djz.1_3'UTR|SLC17A3_uc011dka.1_Missense_Mutation_p.R214K	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	214					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						GGGTAGAGATCTGAGCATAGC	0.423													20	82					0	0	1	0	0
SLC17A3	10786	broad.mit.edu	37	6	25862608	25862608	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:25862608C>T	uc003nfi.3	-	3	266	c.156G>A	c.(154-156)ACG>ACA	p.T52T	SLC17A3_uc003nfk.3_Silent_p.T52T|SLC17A3_uc011djz.1_Silent_p.T52T|SLC17A3_uc011dka.1_Silent_p.T52T	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	52					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						TTTGTGCTATCGTTGTGAAAT	0.413													28	119					0	0	1	0	0
HIST1H3B	8358	broad.mit.edu	37	6	26032146	26032146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26032146G>A	uc003nfs.1	-	1	143	c.143C>T	c.(142-144)GCT>GTT	p.A48V		NM_003537	NP_003528	P68431	H31_HUMAN	histone cluster 1, H3b	48					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						CTCGCGCAGAGCCACAGTGCC	0.632													35	148					0	0	1	0	0
HIST1H4C	8364	broad.mit.edu	37	6	26104318	26104318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26104318C>T	uc003ngi.2	+	1	143	c.143C>T	c.(142-144)TCC>TTC	p.S48F		NM_003542	NP_003533	P62805	H4_HUMAN	histone cluster 1, H4c	48					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0						AAGCGCATTTCCGGTCTTATC	0.537													21	53					0	0	1	0	0
HIST1H2BG	8339	broad.mit.edu	37	6	26216779	26216779	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26216779C>T	uc003ngz.2	-	1	94	c.93G>A	c.(91-93)AAG>AAA	p.K31K	HIST1H2AE_uc003nha.1_5'Flank	NM_003518	NP_003509	P62807	H2B1C_HUMAN	histone cluster 1, H2bg	31					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			ovary(1)	1		all_hematologic(11;0.196)				TACGACTGCGCTTGCGCTTCT	0.527													58	230					0	0	1	0	0
HIST1H4F	8361	broad.mit.edu	37	6	26240738	26240738	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26240738G>A	uc003nhe.1	+	1	85	c.85G>A	c.(85-87)GGC>AGC	p.G29S		NM_003540	NP_003531	P62805	H4_HUMAN	histone cluster 1, H4f	29					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				CAACATACAGGGCATCACGAA	0.557													9	34					0	0	1	0	0
HIST1H3F	8968	broad.mit.edu	37	6	26250518	26250518	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26250518C>T	uc003nhg.1	-	1	318	c.316G>A	c.(316-318)GAG>AAG	p.E106K	HIST1H2BH_uc003nhh.2_5'Flank	NM_021018	NP_066298	P68431	H31_HUMAN	histone cluster 1, H3f	106					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0						TTGGTGTCCTCAAAGAGCCCC	0.602											OREG0017241	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	147					0	0	1	0	0
HIST1H2BI	8346	broad.mit.edu	37	6	26273370	26273370	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26273370C>T	uc003nhk.2	+	1	167	c.167C>T	c.(166-168)TCG>TTG	p.S56L	HIST1H3G_uc003nhi.2_5'Flank	NM_003525	NP_003516	P62807	H2B1C_HUMAN	histone cluster 1, H2bi	56					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding				0						ACCGGCATCTCGTCCAAGGCT	0.567													104	261					0	0	1	0	0
BTN3A2	11118	broad.mit.edu	37	6	26368453	26368453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26368453C>T	uc010jqh.1	+	3	302	c.43C>T	c.(43-45)CAT>TAT	p.H15Y	BTN3A2_uc003nho.1_Missense_Mutation_p.H13Y|BTN3A2_uc003nhp.2_Missense_Mutation_p.H15Y|BTN3A2_uc011dkd.1_Intron|BTN3A2_uc011dke.1_Intron|BTN3A2_uc010jqi.1_Missense_Mutation_p.H13Y	NM_007047	NP_008978	P78410	BT3A2_HUMAN	butyrophilin, subfamily 3, member A2 precursor	15						integral to membrane					0						GCTCAACTTTCATGTCTCCCT	0.453													53	105					0	0	1	0	0
BTN2A1	11120	broad.mit.edu	37	6	26463639	26463639	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26463639C>T	uc003nib.1	+	4	810	c.598C>T	c.(598-600)CTC>TTC	p.L200F	BTN2A1_uc003nic.1_Missense_Mutation_p.L200F|BTN2A1_uc003nid.1_Missense_Mutation_p.L48F|BTN2A1_uc011dko.1_Missense_Mutation_p.L139F|BTN2A1_uc010jqk.1_5'Flank	NM_007049	NP_008980	Q7KYR7	BT2A1_HUMAN	butyrophilin, subfamily 2, member A1 isoform 1	200	Extracellular (Potential).				lipid metabolic process	integral to plasma membrane				ovary(1)|skin(1)	2						TGCAGACGGCCTCTTCATGGT	0.557													38	114					0	0	1	0	0
BTN1A1	696	broad.mit.edu	37	6	26502051	26502051	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26502051G>A	uc003nif.3	+	2	333	c.313G>A	c.(313-315)GGG>AGG	p.G105R		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	105	Extracellular (Potential).|Ig-like V-type 1.					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						CATCGCCAAGGGGCGCGTGGC	0.667													8	50					0	0	1	0	0
BTN1A1	696	broad.mit.edu	37	6	26509185	26509185	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26509185C>T	uc003nif.3	+	7	1384	c.1364C>T	c.(1363-1365)CCC>CTC	p.P455L		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	455	B30.2/SPRY.|Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						TTCTCTGGCCCCCTCCGGCCC	0.478													18	71					0	0	1	0	0
HMGN4	10473	broad.mit.edu	37	6	26545639	26545639	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:26545639C>T	uc003nig.2	+	2	443	c.205C>T	c.(205-207)CCT>TCT	p.P69S		NM_006353	NP_006344	O00479	HMGN4_HUMAN	high mobility group nucleosomal binding domain	69						chromatin|nucleus	DNA binding				0						TGGGAACAACCCTGCAAAAAA	0.493													33	93					0	0	1	0	0
PRSS16	10279	broad.mit.edu	37	6	27218585	27218585	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:27218585G>A	uc003nja.2	+	5	603	c.591G>A	c.(589-591)AAG>AAA	p.K197K	PRSS16_uc011dkt.1_Intron|PRSS16_uc003njb.2_Intron|PRSS16_uc010jqq.1_Silent_p.K87K|PRSS16_uc010jqr.1_Silent_p.K87K|PRSS16_uc003njc.1_Intron|PRSS16_uc003njd.2_5'Flank	NM_005865	NP_005856	Q9NQE7	TSSP_HUMAN	protease, serine, 16 precursor	197					protein catabolic process|proteolysis	cytoplasmic membrane-bounded vesicle	serine-type peptidase activity			ovary(2)|central_nervous_system(2)|skin(1)	5						CCCGGCTGAAGGTCCTGCGAC	0.652													15	43					0	0	1	0	0
PRSS16	10279	broad.mit.edu	37	6	27220706	27220706	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:27220706G>A	uc003nja.2	+	9	1140	c.1128G>A	c.(1126-1128)CAG>CAA	p.Q376Q	PRSS16_uc011dkt.1_RNA|PRSS16_uc003njb.2_Silent_p.Q119Q|PRSS16_uc010jqq.1_Silent_p.Q153Q|PRSS16_uc010jqr.1_Silent_p.Q127Q|PRSS16_uc003njc.1_RNA|PRSS16_uc003njd.2_Intron	NM_005865	NP_005856	Q9NQE7	TSSP_HUMAN	protease, serine, 16 precursor	376					protein catabolic process|proteolysis	cytoplasmic membrane-bounded vesicle	serine-type peptidase activity			ovary(2)|central_nervous_system(2)|skin(1)	5						GGTTGTATCAGACATGTACCG	0.502													58	125					0	0	1	0	0
FKSG83	83954	broad.mit.edu	37	6	27293490	27293490	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:27293490G>A	uc010jqt.2	+	1	913	c.429G>A	c.(427-429)TTG>TTA	p.L143L	FKSG83_uc010jqs.1_3'UTR	NM_032030	NP_114419	Q3KNW7	Q3KNW7_HUMAN	FKSG83	143						integral to membrane	pheromone receptor activity				0						CTTTGATATTGATTAATTATG	0.328													13	44					0	0	1	0	0
ZNF391	346157	broad.mit.edu	37	6	27368311	27368311	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:27368311C>T	uc003njf.1	+	3	680	c.162C>T	c.(160-162)TTC>TTT	p.F54F		NM_001076781	NP_001070249	Q9UJN7	ZN391_HUMAN	zinc finger protein 391	54					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(2)|skin(1)	3						AAGAAATTTTCACAGGGGAGG	0.428													26	77					0	0	1	0	0
ZNF184	7738	broad.mit.edu	37	6	27419836	27419836	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:27419836G>A	uc003njj.2	-	5	2313	c.1502C>T	c.(1501-1503)CCC>CTC	p.P501L	ZNF184_uc010jqv.2_Missense_Mutation_p.P501L|ZNF184_uc003nji.2_Missense_Mutation_p.P501L	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	501					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCATTCAAAGGGCTTTTCTCT	0.388													19	81					0	0	1	0	0
HIST1H3I	8354	broad.mit.edu	37	6	27839863	27839863	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:27839863C>T	uc003njy.2	-	1	237	c.231G>A	c.(229-231)CAG>CAA	p.Q77Q		NM_003533	NP_003524	P68431	H31_HUMAN	histone cluster 1, H3i	77					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						TCTTAAAGTCCTGTGCGATCT	0.612													19	128					0	0	1	0	0
OR2B6	26212	broad.mit.edu	37	6	27925636	27925637	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:27925636_27925637CC>TT	uc011dkx.1	+	1	618_619	c.618_619CC>TT	c.(616-621)TTCCAT>TTTTAT	p.H207Y		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTGAGCTCTTCCATCTAATACC	0.426													63	206					0	0	1	0	0
ZNF192	7745	broad.mit.edu	37	6	28119655	28119655	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28119655C>T	uc003nkn.1	+	4	776	c.592C>T	c.(592-594)CAG>TAG	p.Q198*	ZNF192_uc010jqx.1_Nonsense_Mutation_p.Q198*|ZNF192_uc010jqy.1_Nonsense_Mutation_p.Q11*|ZNF192_uc011dkz.1_Nonsense_Mutation_p.Q11*	NM_006298	NP_006289	Q15776	ZN192_HUMAN	zinc finger protein 192	198					viral reproduction	cytoplasm|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TACTCGTTCCCAGAAAGGAAG	0.527													37	76					0	0	1	0	0
ZNF192	7745	broad.mit.edu	37	6	28120072	28120072	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28120072C>T	uc003nkn.1	+	5	869	c.685C>T	c.(685-687)CTT>TTT	p.L229F	ZNF192_uc010jqx.1_Missense_Mutation_p.L229F|ZNF192_uc010jqy.1_Missense_Mutation_p.L42F|ZNF192_uc011dkz.1_Missense_Mutation_p.L42F	NM_006298	NP_006289	Q15776	ZN192_HUMAN	zinc finger protein 192	229	KRAB.				viral reproduction	cytoplasm|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGCTGTGTCCCTTATTCGAGA	0.453													36	147					0	0	1	0	0
ZNF192	7745	broad.mit.edu	37	6	28121356	28121356	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28121356C>T	uc003nkn.1	+	6	1482	c.1298C>T	c.(1297-1299)CCC>CTC	p.P433L	ZNF192_uc010jqx.1_Missense_Mutation_p.P433L|ZNF192_uc010jqy.1_Missense_Mutation_p.P246L|ZNF192_uc011dkz.1_Missense_Mutation_p.P246L	NM_006298	NP_006289	Q15776	ZN192_HUMAN	zinc finger protein 192	433					viral reproduction	cytoplasm|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGAGAGAGACCCTATGAATGT	0.498													11	123					0	0	1	0	0
ZNF192	7745	broad.mit.edu	37	6	28121693	28121693	+	Silent	SNP	C	T	T	rs62638669	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28121693C>T	uc003nkn.1	+	6	1819	c.1635C>T	c.(1633-1635)CCC>CCT	p.P545P	ZNF192_uc010jqx.1_Silent_p.P545P|ZNF192_uc010jqy.1_Silent_p.P358P|ZNF192_uc011dkz.1_Silent_p.P358P	NM_006298	NP_006289	Q15776	ZN192_HUMAN	zinc finger protein 192	545					viral reproduction	cytoplasm|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGGAGAAGCCCTACCAATGTA	0.423													17	103					0	0	1	0	0
PGBD1	84547	broad.mit.edu	37	6	28269783	28269783	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28269783G>A	uc003nky.2	+	7	2522	c.2152G>A	c.(2152-2154)GAA>AAA	p.E718K	PGBD1_uc003nkz.2_Missense_Mutation_p.E718K	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	718					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						TGCTGATAACGAAGAAATCCC	0.403													21	118					0	0	1	0	0
ZKSCAN3	80317	broad.mit.edu	37	6	28333369	28333369	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28333369C>T	uc003nle.3	+	6	1140	c.924C>T	c.(922-924)GCC>GCT	p.A308A	ZKSCAN3_uc010jrc.2_Silent_p.A308A|ZKSCAN3_uc003nlf.3_Silent_p.A160A|uc010jrd.2_5'Flank	NM_024493	NP_077819	Q9BRR0	ZKSC3_HUMAN	zinc finger with KRAB and SCAN domains 3	308					positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	chromatin binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						AGAAAAATGCCACAGGAGGGA	0.502													20	53					0	0	1	0	0
ZSCAN23	222696	broad.mit.edu	37	6	28403867	28403868	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28403867_28403868GG>AA	uc003nli.3	-	2	357_358	c.176_177CC>TT	c.(175-177)TCC>TTT	p.S59F	ZSCAN23_uc003nlh.2_RNA|ZSCAN23_uc010jrf.1_Intron|ZSCAN23_uc011dli.1_Missense_Mutation_p.S59F	NM_001012455	NP_001012458	Q3MJ62	ZSC23_HUMAN	zinc finger protein 390	59	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGGGCCCAGGGGACTCCTGATA	0.554													19	41					0	0	1	0	0
ZSCAN23	222696	broad.mit.edu	37	6	28403922	28403922	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28403922G>A	uc003nli.3	-	2	303	c.122C>T	c.(121-123)CCT>CTT	p.P41L	ZSCAN23_uc003nlh.2_RNA|ZSCAN23_uc010jrf.1_Intron|ZSCAN23_uc011dli.1_Missense_Mutation_p.P41L	NM_001012455	NP_001012458	Q3MJ62	ZSC23_HUMAN	zinc finger protein 390	41					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCTGGTATGAGGGTTATTTCT	0.537													4	10					0	0	1	0	0
GPX5	2880	broad.mit.edu	37	6	28493824	28493824	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28493824C>T	uc003nll.2	+	1	36	c.34C>T	c.(34-36)CCC>TCC	p.P12S	GPX5_uc003nlm.2_Missense_Mutation_p.P12S|GPX5_uc003nln.2_5'Flank	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	12					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	CCATCTGCTTCCCCTTCTCCT	0.498													79	168					0	0	1	0	0
GPX5	2880	broad.mit.edu	37	6	28497335	28497335	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28497335C>T	uc003nll.2	+	2	197	c.195C>T	c.(193-195)CTC>CTT	p.L65L	GPX5_uc003nlm.2_Silent_p.L65L|GPX5_uc003nln.2_RNA	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	65					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	AGCACATCCTCTTCGTCAACG	0.438													37	68					0	0	1	0	0
GPX5	2880	broad.mit.edu	37	6	28499611	28499611	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28499611C>T	uc003nll.2	+	3	300	c.298C>T	c.(298-300)CCC>TCC	p.P100S	GPX5_uc003nlm.2_Intron|GPX5_uc003nln.2_Intron	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	100					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	GTTGGGCTTTCCCTGCAACCA	0.468													63	227					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28539966	28539966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28539966C>T	uc003nlo.2	-	4	4318	c.3700G>A	c.(3700-3702)GAA>AAA	p.E1234K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1234					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ttcaatccttcgtcggtagcc	0													19	50					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28540813	28540813	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28540813C>T	uc003nlo.2	-	4	3471	c.2853G>A	c.(2851-2853)AAG>AAA	p.K951K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	951					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						caatataattctttacagctt	0													13	34					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28540967	28540967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28540967G>A	uc003nlo.2	-	4	3317	c.2699C>T	c.(2698-2700)TCA>TTA	p.S900L		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	900					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						aagttgcaatgaaaaatactt	0													19	61					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28541300	28541300	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28541300G>A	uc003nlo.2	-	4	2984	c.2366C>T	c.(2365-2367)TCA>TTA	p.S789L		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	789					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ttttggttgtgaacttatttc	0													16	63					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28543009	28543009	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28543009G>A	uc003nlo.2	-	3	2091	c.1473C>T	c.(1471-1473)AAC>AAT	p.N491N		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	491	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGTGTGATGAGTTGTTAGTTT	0.433													48	104					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28543050	28543050	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28543050C>T	uc003nlo.2	-	3	2050	c.1432G>A	c.(1432-1434)GAT>AAT	p.D478N		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	478	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTTCGGATATCCTCAGTTTGT	0.428													36	79					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28543236	28543236	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28543236C>T	uc003nlo.2	-	3	1864	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	416	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGTGCAACTTCCGTAGGCCTT	0.388													21	62					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28554407	28554407	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:28554407C>T	uc003nlo.2	-	1	706	c.88G>A	c.(88-90)GAA>AAA	p.E30K	uc003nlp.1_5'Flank	NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	30					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTGTGGTCTTCTTCTTTAACC	0.502													30	57					0	0	1	0	0
OR2W1	26692	broad.mit.edu	37	6	29012767	29012767	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29012767G>A	uc003nlw.2	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AATTTCTGAGGAAAAAGTACA	0.433													29	75					0	0	1	0	0
OR2W1	26692	broad.mit.edu	37	6	29012823	29012823	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29012823C>T	uc003nlw.2	-	1	130	c.130G>A	c.(130-132)GCC>ACC	p.A44T		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AGAATGATGGCTGTGTTACCC	0.403													48	102					0	0	1	0	0
OR2W1	26692	broad.mit.edu	37	6	29012875	29012875	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29012875G>A	uc003nlw.2	-	1	78	c.78C>T	c.(76-78)ATC>ATT	p.I26I		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CTCCTGACAGGATCATCTCCA	0.403													44	110					0	0	1	0	0
OR2B3	442184	broad.mit.edu	37	6	29054214	29054214	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29054214C>T	uc003nlx.2	-	1	877	c.812G>A	c.(811-813)GGA>GAA	p.G271E		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						AACCATCTTTCCCCAGTCCTT	0.443													9	63					0	0	1	0	0
OR2J3	442186	broad.mit.edu	37	6	29080214	29080214	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29080214G>A	uc011dll.1	+	1	547	c.547G>A	c.(547-549)GAA>AAA	p.E183K		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTTTTCTGTGAAGTTCCAGC	0.463													35	92					0	0	1	0	0
OR2J3	442186	broad.mit.edu	37	6	29080233	29080233	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29080233G>A	uc011dll.1	+	1	566	c.566G>A	c.(565-567)CGA>CAA	p.R189Q		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCACTTCTGCGATTATCGTGT	0.448													24	72					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141779	29141779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29141779C>T	uc011dlm.1	+	1	469	c.367C>T	c.(367-369)CGT>TGT	p.R123C		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTCATATGATCGTTATGTAGC	0.448													94	255					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141890	29141890	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29141890C>T	uc011dlm.1	+	1	580	c.478C>T	c.(478-480)CAT>TAT	p.H160Y		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCAGCACTTCATTCCTCCTT	0.463													32	265					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141894	29141894	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29141894C>T	uc011dlm.1	+	1	584	c.482C>T	c.(481-483)TCC>TTC	p.S161F		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCACTTCATTCCTCCTTTACT	0.463													92	203					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29142037	29142037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29142037C>T	uc011dlm.1	+	1	727	c.625C>T	c.(625-627)CTC>TTC	p.L209F		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATTTTTGTTCTCATACCTCT	0.468													34	114					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29142318	29142318	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29142318G>A	uc011dlm.1	+	1	1008	c.906G>A	c.(904-906)GCG>GCA	p.A302A		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGGGGCAGCGAAGAGACTAT	0.453													18	71					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29142344	29142344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29142344G>A	uc011dlm.1	+	1	1034	c.932G>A	c.(931-933)GGG>GAG	p.G311E		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	311	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGGAGTGGGGGAAGTGACAG	0.423													24	45					0	0	1	0	0
OR14J1	442191	broad.mit.edu	37	6	29274634	29274634	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29274634C>T	uc011dln.1	+	1	168	c.168C>T	c.(166-168)CCC>CCT	p.P56P		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	56	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCATTCCCCCATGTATTACT	0.468													50	173					0	0	1	0	0
OR14J1	442191	broad.mit.edu	37	6	29275004	29275004	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29275004C>T	uc011dln.1	+	1	538	c.538C>T	c.(538-540)CCT>TCT	p.P180S		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGTGATGTTCCTCAGATGCT	0.453													36	154					0	0	1	0	0
OR14J1	442191	broad.mit.edu	37	6	29275106	29275106	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29275106C>T	uc011dln.1	+	1	640	c.640C>T	c.(640-642)CTC>TTC	p.L214F		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTCCATTGTGCTCTCCTACAT	0.468													64	136					0	0	1	0	0
OR14J1	442191	broad.mit.edu	37	6	29275126	29275126	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29275126C>T	uc011dln.1	+	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTCGCATCTTCTCTACAGTGC	0.468													51	160					0	0	1	0	0
OR5V1	81696	broad.mit.edu	37	6	29323644	29323644	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29323644G>A	uc011dlo.1	-	1	411	c.329C>T	c.(328-330)TCA>TTA	p.S110L		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						GAGACACTCTGATCCTACAAA	0.403													28	68					0	0	1	0	0
OR5V1	81696	broad.mit.edu	37	6	29323781	29323781	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29323781C>T	uc011dlo.1	-	1	274	c.192G>A	c.(190-192)GGG>GGA	p.G64G		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						AGGCCAAGTTCCCTAGAAAAT	0.408													58	126					0	0	1	0	0
OR12D3	81797	broad.mit.edu	37	6	29342696	29342696	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29342696G>A	uc003nme.2	-	1	373	c.369C>T	c.(367-369)GCC>GCT	p.A123A		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						GATTGCAGATGGCAACAAAAC	0.488													10	56					0	0	1	0	0
OR12D3	81797	broad.mit.edu	37	6	29342997	29342998	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29342997_29342998GG>AA	uc003nme.2	-	1	71_72	c.67_68CC>TT	c.(67-69)CCT>TTT	p.P23F		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						AAAGAAGAAAGGCTGCAGCTCC	0.391													8	61					0	0	1	0	0
OR12D2	26529	broad.mit.edu	37	6	29364623	29364623	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29364623C>T	uc003nmf.3	+	1	208	c.147C>T	c.(145-147)TCC>TCT	p.S49S		NM_013936	NP_039224	P58182	O12D2_HUMAN	olfactory receptor, family 12, subfamily D,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTGTCATCTCCGATCCTAGAC	0.458													23	97					0	0	1	0	0
OR12D2	26529	broad.mit.edu	37	6	29365268	29365268	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29365268G>A	uc003nmf.3	+	1	853	c.792G>A	c.(790-792)GAG>GAA	p.E264E		NM_013936	NP_039224	P58182	O12D2_HUMAN	olfactory receptor, family 12, subfamily D,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGCGTTAGAGAGCTTCATGG	0.458													70	163					0	0	1	0	0
OR11A1	26531	broad.mit.edu	37	6	29395302	29395302	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29395302G>A	uc003nmg.2	-	1	208	c.117C>T	c.(115-117)TTC>TTT	p.F39F		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTATGATGATGAAGACATAGA	0.403													32	53					0	0	1	0	0
OR10C1	442194	broad.mit.edu	37	6	29407834	29407834	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29407834C>T	uc011dlp.1	+	1	42	c.42C>T	c.(40-42)CTC>CTT	p.L14L	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCTTCTTCTCGGCTTCTCCC	0.498													8	75					0	0	1	0	0
OR10C1	442194	broad.mit.edu	37	6	29408205	29408206	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29408205_29408206GG>AA	uc011dlp.1	+	1	413_414	c.413_414GG>AA	c.(412-414)CGG>CAA	p.R138Q	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGAGCCACCGGGTGTGTCTAC	0.634													23	51					0	0	1	0	0
OR10C1	442194	broad.mit.edu	37	6	29408375	29408375	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29408375G>A	uc011dlp.1	+	1	583	c.583G>A	c.(583-585)GAA>AAA	p.E195K	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCGCTTAATGAACTGCAGAT	0.562													71	143					0	0	1	0	0
OR2H1	26716	broad.mit.edu	37	6	29429863	29429863	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29429863G>A	uc003nmi.2	+	3	760	c.317G>A	c.(316-318)GGG>GAG	p.G106E	OR2H1_uc003nmj.1_Missense_Mutation_p.G106E|OR2H1_uc010jri.1_Missense_Mutation_p.G28E	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTCCCTGGGGACCACTGAG	0.587													41	103					0	0	1	0	0
OR2H1	26716	broad.mit.edu	37	6	29430158	29430158	+	Silent	SNP	C	T	T	rs144363872	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29430158C>T	uc003nmi.2	+	3	1055	c.612C>T	c.(610-612)TTC>TTT	p.F204F	OR2H1_uc003nmj.1_Silent_p.F204F|OR2H1_uc010jri.1_Silent_p.F126F	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGTCATCTTCGTGGTTGTGC	0.502													67	168					0	0	1	0	0
OR2H1	26716	broad.mit.edu	37	6	29430209	29430209	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29430209G>A	uc003nmi.2	+	3	1106	c.663G>A	c.(661-663)CAG>CAA	p.Q221Q	OR2H1_uc003nmj.1_Silent_p.Q221Q|OR2H1_uc010jri.1_Silent_p.Q143Q	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCACTGCCCAGGCAGTGCTGA	0.532													62	171					0	0	1	0	0
OR2H2	7932	broad.mit.edu	37	6	29555752	29555752	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29555752C>T	uc003nmr.1	+	1	70	c.31C>T	c.(31-33)CTC>TTC	p.L11F	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	11	Extracellular (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACCGGGCTTCCTCCTTCTGGG	0.512													58	150					0	0	1	0	0
GABBR1	2550	broad.mit.edu	37	6	29595317	29595317	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29595317G>A	uc003nmt.3	-	6	939	c.603C>T	c.(601-603)AGC>AGT	p.S201S	GABBR1_uc003nmp.3_Silent_p.S84S|GABBR1_uc003nms.3_Silent_p.S84S|GABBR1_uc003nmu.3_Silent_p.S139S|GABBR1_uc011dlr.1_Silent_p.S24S|GABBR1_uc011dls.1_Silent_p.S201S	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	201	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	TGTCCCTGCGGCTATTCACGT	0.677													8	11					0	0	1	0	0
MOG	4340	broad.mit.edu	37	6	29627145	29627145	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29627145G>A	uc003nnf.2	+	2	316	c.138G>A	c.(136-138)GGG>GGA	p.G46G	MOG_uc003qzk.1_Silent_p.G46G|MOG_uc010kle.1_Intron|MOG_uc010klf.1_Intron|MOG_uc003nmy.1_Silent_p.G46G|MOG_uc003nmz.2_Silent_p.G46G|MOG_uc011dlt.1_5'UTR|MOG_uc003nna.2_Intron|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_Silent_p.G46G|MOG_uc003nne.2_Silent_p.G46G|MOG_uc003nng.2_Silent_p.G46G|MOG_uc003nnh.2_Silent_p.G46G|MOG_uc003nni.2_Silent_p.G46G|MOG_uc003nnj.2_Silent_p.G46G|MOG_uc003nnk.2_Silent_p.G46G	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	46	Ig-like V-type.|Extracellular (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						CTCTGGTCGGGGATGAAGTGG	0.547													59	200					0	0	1	0	0
ZFP57	346171	broad.mit.edu	37	6	29640975	29640975	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29640975G>A	uc011dlw.1	-	4	1064	c.913C>T	c.(913-915)CAG>TAG	p.Q305*	ZFP57_uc003nnl.3_Nonsense_Mutation_p.Q285*	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	221					DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						ATGGGTGTCTGGAATTCAGCC	0.542													53	132					0	0	1	0	0
HLA-G	3135	broad.mit.edu	37	6	29797602	29797602	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29797602C>T	uc003nnw.2	+	6	1083	c.905C>T	c.(904-906)TCC>TTC	p.S302F	HLA-G_uc011dmb.1_Missense_Mutation_p.S274F|HLA-G_uc003raj.3_Missense_Mutation_p.S307F|HLA-G_uc003nnz.3_Missense_Mutation_p.S210F|HLA-G_uc010jrn.2_Missense_Mutation_p.S118F|HLA-G_uc003nny.3_RNA|HLA-G_uc003ran.1_RNA	NM_002127	NP_002118	P17693	HLAG_HUMAN	major histocompatibility complex, class I, G	302	Extracellular (Potential).|Connecting peptide.				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			ovary(3)|central_nervous_system(1)	4						GAGCAGTCTTCCCTGCCCACC	0.582													11	101					0	0	1	0	0
PPP1R11	6992	broad.mit.edu	37	6	30037021	30037021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30037021C>T	uc003npb.2	+	3	575	c.319C>T	c.(319-321)CCC>TCC	p.P107S	PPP1R11_uc010jrw.2_RNA|PPP1R11_uc003npc.2_RNA	NM_021959	NP_068778	O60927	PP1RB_HUMAN	protein phosphatase 1, regulatory (inhibitor)	107	Pro-rich.					soluble fraction	protein binding|protein phosphatase inhibitor activity			ovary(1)|lung(1)|skin(1)	3						AGGACCGACCCCCACCACCCC	0.617													68	125					0	0	1	0	0
TRIM40	135644	broad.mit.edu	37	6	30104940	30104940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30104940G>A	uc003npk.2	+	2	513	c.127G>A	c.(127-129)GAG>AAG	p.E43K	TRIM40_uc003npl.1_RNA|TRIM40_uc003npm.2_Missense_Mutation_p.E43K	NM_138700	NP_619645	Q6P9F5	TRI40_HUMAN	tripartite motif-containing 40	43	RING-type.					intracellular	zinc ion binding			ovary(1)	1						ACAGCATGTGGAGAAGGCCTC	0.612													16	47					0	0	1	0	0
TRIM40	135644	broad.mit.edu	37	6	30105149	30105149	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30105149C>T	uc003npk.2	+	2	722	c.336C>T	c.(334-336)AGC>AGT	p.S112S	TRIM40_uc003npl.1_RNA|TRIM40_uc003npm.2_Silent_p.S112S	NM_138700	NP_619645	Q6P9F5	TRI40_HUMAN	tripartite motif-containing 40	112	Potential.					intracellular	zinc ion binding			ovary(1)	1						ATGCCCTCAGCCACTACAAGG	0.547													11	82					0	0	1	0	0
TRIM10	10107	broad.mit.edu	37	6	30126365	30126365	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30126365G>A	uc003npo.3	-	3	643	c.567C>T	c.(565-567)TTC>TTT	p.F189F	TRIM10_uc003npn.2_Silent_p.F189F	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	189						cytoplasm	zinc ion binding				0						TCAGGTGTGCGAACTCAGAAA	0.517													100	225					0	0	1	0	0
TRIM15	89870	broad.mit.edu	37	6	30134964	30134964	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30134964G>A	uc010jrx.2	+	2	872	c.393G>A	c.(391-393)AGG>AGA	p.R131R		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	131	Potential.				mesodermal cell fate determination	intracellular	zinc ion binding				0						ATCGTCTCAGGAGTCGACTGG	0.383													16	70					0	0	1	0	0
TRIM15	89870	broad.mit.edu	37	6	30139662	30139662	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30139662G>A	uc010jrx.2	+	7	1413	c.934G>A	c.(934-936)GAC>AAC	p.D312N		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	312	B30.2/SPRY.				mesodermal cell fate determination	intracellular	zinc ion binding				0						TCTCTCGGAAGACAGGAAGTC	0.652													5	14					0	0	1	0	0
GNL1	2794	broad.mit.edu	37	6	30521163	30521163	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30521163G>A	uc003nqh.2	-	6	1800	c.772C>T	c.(772-774)CCT>TCT	p.P258S	GNL1_uc011dmi.1_Missense_Mutation_p.P120S|GNL1_uc011dmj.1_Missense_Mutation_p.P256S|GNL1_uc011dmk.1_Intron	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	258					response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						GGGTCCCGAGGAAAAGAGGTG	0.572													52	166					0	0	1	0	0
ABCF1	23	broad.mit.edu	37	6	30551997	30551997	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30551997C>T	uc003nql.2	+	13	1226	c.1131C>T	c.(1129-1131)GTC>GTT	p.V377V	ABCF1_uc003nqk.2_Silent_p.V378V|ABCF1_uc003nqm.2_Silent_p.V339V|ABCF1_uc010jsb.2_Intron|MIR877_hsa-mir-877|MI0005561_5'Flank	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	377	ABC transporter 1.				inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						CACCAGCAGTCCAGGCTGTTC	0.552													6	65					0	0	1	0	0
PPP1R10	5514	broad.mit.edu	37	6	30572209	30572209	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30572209C>T	uc003nqn.1	-	13	1734	c.1182G>A	c.(1180-1182)AGG>AGA	p.R394R	PPP1R10_uc010jsc.1_Silent_p.R48R	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	394	Necessary for interaction with PPP1CA (By similarity).|Essential for PPP1CA inhibition (By similarity).|Necessary for interaction with PPP1CC.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						TTTTCCTCTTCCTGCCTTTCC	0.483													57	132					0	0	1	0	0
DHX16	8449	broad.mit.edu	37	6	30632987	30632987	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30632987C>A	uc003nqz.2	-	6	1198	c.986G>T	c.(985-987)TGG>TTG	p.W329L	DHX16_uc011dmo.1_Missense_Mutation_p.W269L	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	329					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						CGCCTCCTCCCAGCGCCGCTG	0.617													6	23					0.0215528	0.0215551	1	1	0
KIAA1949	170954	broad.mit.edu	37	6	30652329	30652329	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30652329G>A	uc003nra.2	-	2	1698	c.1467C>T	c.(1465-1467)ACC>ACT	p.T489T	KIAA1949_uc003nrb.3_Silent_p.T489T	NM_001134870	NP_001128342	Q6NYC8	PHTNS_HUMAN	phostensin	489						cytoplasm|cytoskeleton	actin binding				0						TGGCTGGAGAGGTTGGGGTGG	0.687													4	24					0	0	1	0	0
NRM	11270	broad.mit.edu	37	6	30658642	30658642	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30658642C>T	uc003nrc.2	-	1	128	c.110G>A	c.(109-111)GGG>GAG	p.G37E	KIAA1949_uc003nrb.3_5'Flank|NRM_uc003nrd.2_RNA|NRM_uc003nre.2_5'UTR	NM_007243	NP_009174	Q8IXM6	NRM_HUMAN	nurim	37	Perinuclear space (Potential).					integral to membrane|nuclear inner membrane					0						CTCCGGGATCCCTCCAAGAAG	0.632													35	164					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30670603	30670603	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30670603G>A	uc003nrg.3	-	13	6357	c.5917C>T	c.(5917-5919)CCT>TCT	p.P1973S	MDC1_uc003nrf.3_Missense_Mutation_p.P604S	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1973	Required for nuclear localization (NLS2).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TCTTGCTCAGGGTCGGTCACC	0.547								Other_conserved_DNA_damage_response_genes					39	123					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30672584	30672584	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30672584G>A	uc003nrg.3	-	10	4816	c.4376C>T	c.(4375-4377)ACC>ATC	p.T1459I	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Missense_Mutation_p.T1066I	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1459	Pro-rich.|Interaction with the PRKDC complex.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GTCTGTGGAGGTGGAAGGCTG	0.567								Other_conserved_DNA_damage_response_genes					129	188					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30680738	30680738	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30680738G>A	uc003nrg.3	-	5	1421	c.981C>T	c.(979-981)ATC>ATT	p.I327I	MDC1_uc003nrf.3_5'UTR|MDC1_uc011dmp.1_Silent_p.I199I|MDC1_uc003nrh.1_Silent_p.I199I|MDC1_uc003nri.2_Silent_p.I327I	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	327	Required for nuclear localization (NLS1).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TGTCGCTGTCGATGAAGCCAA	0.532								Other_conserved_DNA_damage_response_genes					18	169					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30681077	30681077	+	Silent	SNP	G	A	A	rs144222920	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30681077G>A	uc003nrg.3	-	5	1082	c.642C>T	c.(640-642)TTC>TTT	p.F214F	MDC1_uc003nrf.3_5'UTR|MDC1_uc011dmp.1_Silent_p.F86F|MDC1_uc003nrh.1_Silent_p.F86F|MDC1_uc003nri.2_Silent_p.F214F	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	214	Interaction with the MRN complex.|Required for nuclear localization (NLS1).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TGTTCAAATTGAAGGCAAAAG	0.527								Other_conserved_DNA_damage_response_genes					18	99					0	0	1	0	0
DDR1	780	broad.mit.edu	37	6	30858825	30858825	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30858825C>T	uc003nrr.2	+	6	752	c.493C>T	c.(493-495)CGC>TGC	p.R165C	DDR1_uc010jse.2_Missense_Mutation_p.R165C|DDR1_uc003nrq.2_Missense_Mutation_p.R165C|DDR1_uc003nrs.2_Missense_Mutation_p.R165C|DDR1_uc003nrt.2_Missense_Mutation_p.R165C|DDR1_uc011dms.1_Missense_Mutation_p.R183C|DDR1_uc011dmt.1_Missense_Mutation_p.R191C|DDR1_uc003nru.2_Missense_Mutation_p.R165C|DDR1_uc011dmu.1_Missense_Mutation_p.R165C|DDR1_uc003nrv.2_Missense_Mutation_p.R165C|DDR1_uc003nrw.1_5'Flank|DDR1_uc003nry.1_5'Flank|DDR1_uc003nrx.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	165	Extracellular (Potential).|F5/8 type C.			R -> H (in Ref. 14; AAH70070).	cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CCGACTGGTTCGCTTCTACCC	0.632													17	59					0	0	1	0	0
DDR1	780	broad.mit.edu	37	6	30860294	30860294	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30860294C>T	uc003nrr.2	+	9	1333	c.1074C>T	c.(1072-1074)CTC>CTT	p.L358L	DDR1_uc010jse.2_Silent_p.L358L|DDR1_uc003nrq.2_Silent_p.L358L|DDR1_uc003nrs.2_Silent_p.L358L|DDR1_uc003nrt.2_Silent_p.L358L|DDR1_uc011dms.1_Silent_p.L376L|DDR1_uc003nru.2_Silent_p.L358L|DDR1_uc003nrv.2_Silent_p.L358L|DDR1_uc003nrw.1_Silent_p.L157L|DDR1_uc003nry.1_5'Flank|DDR1_uc003nrx.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	358	Extracellular (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CCTGGTTACTCTTCAGCGAAA	0.587													13	121					0	0	1	0	0
DDR1	780	broad.mit.edu	37	6	30864450	30864450	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30864450C>T	uc003nrr.2	+	14	1936	c.1677C>T	c.(1675-1677)CCC>CCT	p.P559P	DDR1_uc010jse.2_Silent_p.P522P|DDR1_uc003nrq.2_Silent_p.P522P|DDR1_uc003nrs.2_Silent_p.P559P|DDR1_uc003nrt.2_Silent_p.P522P|DDR1_uc011dms.1_Silent_p.P540P|DDR1_uc003nru.2_Silent_p.P522P|DDR1_uc003nrv.2_Silent_p.P559P|DDR1_uc003nrw.1_Intron|DDR1_uc003nry.1_Intron|DDR1_uc003nrx.1_Intron|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	559	Gly/Pro-rich.|Cytoplasmic (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CGCTTCTGCCCCCACCTCCCC	0.632													34	68					0	0	1	0	0
VARS2	57176	broad.mit.edu	37	6	30890998	30890998	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30890998C>T	uc003nsc.1	+	23	2935	c.2303C>T	c.(2302-2304)CCT>CTT	p.P768L	VARS2_uc011dmx.1_Missense_Mutation_p.P768L|VARS2_uc011dmy.1_Missense_Mutation_p.P628L|VARS2_uc011dmz.1_Missense_Mutation_p.P798L|VARS2_uc011dna.1_Missense_Mutation_p.P766L|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_Missense_Mutation_p.P206L|VARS2_uc010jsg.1_Missense_Mutation_p.P140L|VARS2_uc010jsh.1_5'UTR	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	768					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						GTGCCACAGCCTGCTGAGGAG	0.532													30	130					0	0	1	0	0
MUC21	394263	broad.mit.edu	37	6	30954940	30954940	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:30954940G>A	uc003nsh.2	+	2	1239	c.988G>A	c.(988-990)GCC>ACC	p.A330T	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	330	Ser-rich.|28 X 15 AA approximate tandem repeats.|21.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GGCCAGCACAGCCACCAACTC	0.622													26	335					0	0	1	0	0
C6orf15	29113	broad.mit.edu	37	6	31079453	31079453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31079453C>T	uc003nsk.1	-	2	683	c.683G>A	c.(682-684)GGA>GAA	p.G228E		NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	228	Gly-rich.										0						GGGCCTCGTTCCCCAACCAGT	0.592													8	65					0	0	1	0	0
C6orf15	29113	broad.mit.edu	37	6	31079766	31079766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31079766C>T	uc003nsk.1	-	2	370	c.370G>A	c.(370-372)GAG>AAG	p.E124K	PSORS1C1_uc003nsl.1_5'Flank|PSORS1C1_uc010jsj.1_5'Flank	NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	124											0						AGGCGGTCCTCAGCCGCAGCA	0.652													13	60					0	0	1	0	0
C6orf15	29113	broad.mit.edu	37	6	31079984	31079984	+	Missense_Mutation	SNP	G	A	A	rs139732921		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31079984G>A	uc003nsk.1	-	2	152	c.152C>T	c.(151-153)TCC>TTC	p.S51F	PSORS1C1_uc003nsl.1_5'Flank|PSORS1C1_uc010jsj.1_5'Flank	NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	51											0						GCCAGTGGAGGAAGGTTGTCC	0.567													37	98					0	0	1	0	0
CDSN	1041	broad.mit.edu	37	6	31084214	31084214	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31084214G>A	uc003nsm.1	-	2	1205	c.1178C>T	c.(1177-1179)CCC>CTC	p.P393L	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	393	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						AGAACTGGAGGGAGAGCAGGG	0.642													7	7					0	0	1	0	0
CDSN	1041	broad.mit.edu	37	6	31084467	31084467	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31084467G>A	uc003nsm.1	-	2	952	c.925C>T	c.(925-927)CCA>TCA	p.P309S	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	309	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						GTCATGCCTGGAACCAGATAA	0.547													6	61					0	0	1	0	0
PSORS1C2	170680	broad.mit.edu	37	6	31105856	31105856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31105856G>A	uc003nso.3	-	2	607	c.283C>T	c.(283-285)CCC>TCC	p.P95S	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron|PSORS1C1_uc003nsn.1_Intron	NM_014069	NP_054788	Q9UIG4	PS1C2_HUMAN	SPR1 protein precursor	95						extracellular region					0						TCAGGCCGGGGAGGTTGAGGA	0.657													31	50					0	0	1	0	0
POU5F1	5460	broad.mit.edu	37	6	31138004	31138004	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31138004T>A	uc003nsv.2	-	1	448	c.394A>T	c.(394-396)AAC>TAC	p.N132Y	uc011dng.1_RNA	NM_002701	NP_002692	Q01860	PO5F1_HUMAN	POU domain, class 5, transcription factor 1	132					anatomical structure morphogenesis|blastocyst development|BMP signaling pathway involved in heart induction|cardiac cell fate determination|cell fate commitment involved in formation of primary germ layers|mRNA transcription from RNA polymerase II promoter|negative regulation of gene silencing by miRNA|positive regulation of catenin import into nucleus|positive regulation of SMAD protein import into nucleus|positive regulation of transcription from RNA polymerase II promoter|regulation of asymmetric cell division|regulation of heart induction by regulation of canonical Wnt receptor signaling pathway|regulation of methylation-dependent chromatin silencing|response to wounding|somatic stem cell maintenance|somatic stem cell maintenance	cytosol|nucleoplasm|transcription factor complex	miRNA binding|sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|ubiquitin protein ligase binding		EWSR1/POU5F1(10)	skin(7)|salivary_gland(2)|bone(2)|lung(1)|ovary(1)	13						TCCTCCGGGTTTTGCTCCAGC	0.652			T	EWSR1	sarcoma								25	58					0	0	1	0	0
HLA-B	3106	broad.mit.edu	37	6	31322989	31322989	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31322989G>A	uc003nth.2	-	5	961	c.907C>T	c.(907-909)CAG>TAG	p.Q303*	HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_RNA|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Nonsense_Mutation_p.Q182*|HLA-B_uc003nti.1_Intron	NM_005514	NP_005505	P01889	1B07_HUMAN	major histocompatibility complex, class I, B	303	Extracellular (Potential).|Connecting peptide.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity				0						ACGGTGGACTGGGAAGACGGC	0.602									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				24	55					0	0	1	0	0
MICA	4276	broad.mit.edu	37	6	31378943	31378943	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31378943C>T	uc003ntk.1	+	3	459	c.420C>T	c.(418-420)TTC>TTT	p.F140F	MICA_uc003rxz.1_Intron					RecName: Full=MHC class I polypeptide-related sequence A;          Short=MIC-A; Flags: Precursor;												0		Ovarian(999;0.0253)				GGGAGCTCTTCCTCTCCCAAA	0.537													12	17					0	0	1	0	0
MICB	4277	broad.mit.edu	37	6	31473487	31473487	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31473487C>T	uc003ntn.3	+	2	280	c.164C>T	c.(163-165)CCC>CTC	p.P55L	MICB_uc011dnm.1_Missense_Mutation_p.P23L|MICB_uc003nto.3_Missense_Mutation_p.P55L	NM_005931	NP_005922	Q29980	MICB_HUMAN	MHC class I polypeptide-related sequence B	55	Extracellular (Potential).				antigen processing and presentation|cytolysis|gamma-delta T cell activation|immune response|immune response-activating cell surface receptor signaling pathway|interspecies interaction between organisms|negative regulation of defense response to virus by host|response to heat|response to oxidative stress|response to retinoic acid	integral to plasma membrane|MHC class I protein complex	natural killer cell lectin-like receptor binding				0						GATGGTCAGCCCTTCCTGCGC	0.582													30	69					0	0	1	0	0
MICB	4277	broad.mit.edu	37	6	31474869	31474869	+	Silent	SNP	C	T	T	rs143678527	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31474869C>T	uc003ntn.3	+	4	800	c.684C>T	c.(682-684)TCC>TCT	p.S228S	MICB_uc011dnm.1_Silent_p.S196S|MICB_uc003nto.3_Silent_p.S185S	NM_005931	NP_005922	Q29980	MICB_HUMAN	MHC class I polypeptide-related sequence B	228	Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation|cytolysis|gamma-delta T cell activation|immune response|immune response-activating cell surface receptor signaling pathway|interspecies interaction between organisms|negative regulation of defense response to virus by host|response to heat|response to oxidative stress|response to retinoic acid	integral to plasma membrane|MHC class I protein complex	natural killer cell lectin-like receptor binding				0						GCAGGGCTTCCAGCTTCTATC	0.577													15	51					0	0	1	0	0
LTA	4049	broad.mit.edu	37	6	31540583	31540583	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31540583C>T	uc011dnu.1	+	2	277	c.64C>T	c.(64-66)CTG>TTG	p.L22L	LTA_uc003nue.1_Silent_p.L22L|LTA_uc003nuf.2_5'Flank|LTA_uc003nuh.2_5'Flank|LTA_uc003nug.2_5'Flank|LTA_uc010jsr.2_5'Flank|TNF_uc003nui.2_5'Flank	NM_001159740	NP_001153212	P01374	TNFB_HUMAN	lymphotoxin alpha precursor	22					cell-cell signaling|induction of apoptosis|signal transduction	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0					Etanercept(DB00005)	CCTCCTCCTTCTGGGGCTGCT	0.567													24	78					0	0	1	0	0
LTA	4049	broad.mit.edu	37	6	31540725	31540725	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31540725C>T	uc011dnu.1	+	3	333	c.120C>T	c.(118-120)CTC>CTT	p.L40L	LTA_uc003nue.1_Silent_p.L40L|LTA_uc003nuf.2_RNA|LTA_uc003nuh.2_5'UTR|LTA_uc003nug.2_5'UTR|LTA_uc010jsr.2_RNA|TNF_uc003nui.2_5'Flank	NM_001159740	NP_001153212	P01374	TNFB_HUMAN	lymphotoxin alpha precursor	40					cell-cell signaling|induction of apoptosis|signal transduction	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0					Etanercept(DB00005)	GTGTTGGCCTCACACCTTCAG	0.607													5	51					0	0	1	0	0
LTA	4049	broad.mit.edu	37	6	31541393	31541393	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31541393C>T	uc011dnu.1	+	4	754	c.541C>T	c.(541-543)CTA>TTA	p.L181L	LTA_uc003nue.1_Silent_p.L181L|LTA_uc003nuf.2_Intron|LTA_uc003nuh.2_Intron|LTA_uc003nug.2_Missense_Mutation_p.A90V|LTA_uc010jsr.2_RNA|TNF_uc003nui.2_5'Flank|TNF_uc003nuj.2_5'Flank	NM_001159740	NP_001153212	P01374	TNFB_HUMAN	lymphotoxin alpha precursor	181					cell-cell signaling|induction of apoptosis|signal transduction	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0					Etanercept(DB00005)	GGGAGACCAGCTATCCACCCA	0.557													64	222					0	0	1	0	0
LTA	4049	broad.mit.edu	37	6	31541429	31541429	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31541429C>T	uc011dnu.1	+	4	790	c.577C>T	c.(577-579)CTC>TTC	p.L193F	LTA_uc003nue.1_Missense_Mutation_p.L193F|LTA_uc003nuf.2_Intron|LTA_uc003nuh.2_Intron|LTA_uc003nug.2_Missense_Mutation_p.P102L|LTA_uc010jsr.2_RNA|TNF_uc003nui.2_5'Flank|TNF_uc003nuj.2_5'Flank	NM_001159740	NP_001153212	P01374	TNFB_HUMAN	lymphotoxin alpha precursor	193					cell-cell signaling|induction of apoptosis|signal transduction	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0					Etanercept(DB00005)	CCACCTAGTCCTCAGCCCTAG	0.522													79	186					0	0	1	0	0
NCR3	259197	broad.mit.edu	37	6	31557903	31557903	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31557903C>T	uc003nuv.2	-	2	308	c.44G>A	c.(43-45)GGA>GAA	p.G15E	NCR3_uc003nuw.2_Missense_Mutation_p.G15E|NCR3_uc003nux.1_Missense_Mutation_p.G15E	NM_147130	NP_667341	O14931	NCTR3_HUMAN	natural cytotoxicity triggering receptor 3	15					cell recognition|immune response|inflammatory response|positive regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						AGCACAGGATCCTGGGGGCAG	0.552													20	38					0	0	1	0	0
NCR3	259197	broad.mit.edu	37	6	31560469	31560469	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31560469G>A	uc003nuv.2	-	1	294	c.30C>T	c.(28-30)ATC>ATT	p.I10I	NCR3_uc003nuw.2_Silent_p.I10I|NCR3_uc003nux.1_Silent_p.I10I	NM_147130	NP_667341	O14931	NCTR3_HUMAN	natural cytotoxicity triggering receptor 3	10					cell recognition|immune response|inflammatory response|positive regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						GATGGACCATGATCAAGATGA	0.587													5	36					0	0	1	0	0
BAT2	7916	broad.mit.edu	37	6	31593601	31593601	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31593601C>T	uc003nvb.3	+	8	1041	c.792C>T	c.(790-792)CCC>CCT	p.P264P	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Silent_p.P264P|BAT2_uc003nve.2_3'UTR	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	264	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						TCCCTCCGCCCTATGGACCCC	0.577													16	74					0	0	1	0	0
BAT2	7916	broad.mit.edu	37	6	31599462	31599462	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31599462C>T	uc003nvb.3	+	16	3261	c.3012C>T	c.(3010-3012)TCC>TCT	p.S1004S	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Silent_p.S1004S	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1004	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						GAAATCTTTCCCCTGCCCCAA	0.592													10	18					0	0	1	0	0
MSH5	4439	broad.mit.edu	37	6	31728484	31728484	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31728484C>T	uc003nwv.1	+	20	1909	c.1830C>T	c.(1828-1830)TTC>TTT	p.F610F	MSH5_uc003nwt.1_Silent_p.F627F|MSH5_uc003nwu.1_Silent_p.F610F|MSH5_uc003nww.1_Silent_p.F610F|MSH5_uc003nwx.1_Silent_p.F627F|MSH5_uc011dof.1_Silent_p.F309F|MSH5_uc003nwy.1_Silent_p.F284F|MSH5_uc003nwz.3_RNA|C6orf26_uc003nxa.3_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	610					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						TGATCACATTCATGGCCCTGG	0.557								Direct_reversal_of_damage|MMR					44	99					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31736914	31736914	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31736914G>A	uc011dog.1	-	10	1622	c.1384C>T	c.(1384-1386)CCT>TCT	p.P462S	C6orf27_uc003nxd.2_Missense_Mutation_p.P137S|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	462						extracellular region				ovary(3)	3						AAACGCAGAGGGGACAAGATC	0.537													16	67					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31743748	31743748	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31743748G>A	uc011dog.1	-	3	744	c.506C>T	c.(505-507)GCC>GTC	p.A169V	C6orf27_uc003nxd.2_Intron|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	169						extracellular region				ovary(3)	3						CACCTGCAGGGCATGAAGTGC	0.657													75	145					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31743776	31743776	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31743776G>A	uc011dog.1	-	3	716	c.478C>T	c.(478-480)CGC>TGC	p.R160C	C6orf27_uc003nxd.2_Intron|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	160						extracellular region				ovary(3)	3						AGGCGCTGGCGAGCCAGGGTG	0.667													61	116					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31743967	31743967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31743967G>A	uc011dog.1	-	3	525	c.287C>T	c.(286-288)TCT>TTT	p.S96F	C6orf27_uc003nxd.2_5'UTR|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	96						extracellular region				ovary(3)	3						CCGCCGAGAAGAACCAGGTCC	0.592													34	91					0	0	1	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778336	31778337	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31778336_31778337CC>TT	uc003nxh.2	-	2	1596_1597	c.1413_1414GG>AA	c.(1411-1416)AGGGGA>AGAAGA	p.G472R	HSPA1L_uc010jte.2_Missense_Mutation_p.G472R	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	472					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGAGGAACTCCCCTGGGTGCTG	0.554													44	103					0	0	1	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778460	31778460	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31778460G>A	uc003nxh.2	-	2	1473	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F	HSPA1L_uc010jte.2_Silent_p.F430F	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	430					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGTAGGTGGTGAAAATCTGTG	0.597													81	158					0	0	1	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778532	31778532	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31778532C>T	uc003nxh.2	-	2	1401	c.1218G>A	c.(1216-1218)GAG>GAA	p.E406E	HSPA1L_uc010jte.2_Silent_p.E406E	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	406					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCCCAGCCGTCTCCAGCCCCA	0.607													22	108					0	0	1	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779004	31779004	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31779004C>T	uc003nxh.2	-	2	929	c.746G>A	c.(745-747)AGG>AAG	p.R249K	HSPA1L_uc010jte.2_Missense_Mutation_p.R249K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	249					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TTTGTGTTTCCTCTTGAACTC	0.592													39	97					0	0	1	0	0
EHMT2	10919	broad.mit.edu	37	6	31852266	31852266	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31852266G>A	uc003nxz.1	-	21	2684	c.2674C>T	c.(2674-2676)CCC>TCC	p.P892S	EHMT2_uc003nxv.1_5'UTR|EHMT2_uc003nxw.1_5'UTR|EHMT2_uc003nxx.1_Missense_Mutation_p.P90S|EHMT2_uc003nxy.1_Missense_Mutation_p.P690S|EHMT2_uc011don.1_Missense_Mutation_p.P915S|EHMT2_uc003nya.1_Missense_Mutation_p.P858S	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	892					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						GAGCGCTCGGGAGTCAGGTCC	0.602													42	109					0	0	1	0	0
C2	717	broad.mit.edu	37	6	31895859	31895859	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31895859C>T	uc003nyf.2	+	2	438	c.174C>T	c.(172-174)TCC>TCT	p.S58S	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Silent_p.S58S|C2_uc010jtk.2_Intron|C2_uc011doq.1_Missense_Mutation_p.P20L|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Silent_p.S58S	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	58	Sushi 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		TGTACCCATCCCCAGCATCAC	0.637													8	36					0	0	1	0	0
C2	717	broad.mit.edu	37	6	31896655	31896655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31896655G>A	uc003nyf.2	+	3	667	c.403G>A	c.(403-405)GGC>AGC	p.G135S	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Missense_Mutation_p.G135S|C2_uc010jtk.2_Intron|C2_uc011doq.1_Missense_Mutation_p.G106S|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	135	Sushi 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		TCGCCCCAACGGCATGTGGGA	0.622													22	49					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31901450	31901450	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31901450A>T	uc011dor.1	+	3	584	c.320A>T	c.(319-321)CAT>CTT	p.H107L	C2_uc003nyc.2_Missense_Mutation_p.M1L|C2_uc011doo.1_Missense_Mutation_p.M1L|C2_uc011dop.1_Missense_Mutation_p.H46L|C2_uc003nye.3_Missense_Mutation_p.H169L|C2_uc003nyf.2_Missense_Mutation_p.H169L|C2_uc010jtk.2_Missense_Mutation_p.H37L|C2_uc011doq.1_Missense_Mutation_p.H140L|C2_uc003nyg.2_Missense_Mutation_p.H37L	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CGCTTTGGTCATGGGGACAAG	0.632													24	70					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31901501	31901501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31901501C>T	uc011dor.1	+	3	635	c.371C>T	c.(370-372)TCT>TTT	p.S124F	C2_uc003nyc.2_Missense_Mutation_p.L18F|C2_uc011doo.1_Missense_Mutation_p.L18F|C2_uc011dop.1_Missense_Mutation_p.S63F|C2_uc003nye.3_Missense_Mutation_p.S186F|C2_uc003nyf.2_Missense_Mutation_p.S186F|C2_uc010jtk.2_Missense_Mutation_p.S54F|C2_uc011doq.1_Missense_Mutation_p.S157F|C2_uc003nyg.2_Missense_Mutation_p.S54F	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	200	Sushi 3.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CTCACGGGGTCTTCGGAGCGG	0.637													20	59					0	0	1	0	0
C2	717	broad.mit.edu	37	6	31902026	31902026	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31902026G>A	uc003nyf.2	+	6	1063	c.799G>A	c.(799-801)GAA>AAA	p.E267K	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Missense_Mutation_p.E267K|C2_uc010jtk.2_Missense_Mutation_p.E135K|C2_uc011doq.1_Missense_Mutation_p.E238K|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron|C2_uc003nyh.1_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	267	VWFA.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		GAGTGTGTCGGAAAATGACTT	0.532													66	241					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31907063	31907063	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31907063C>T	uc011dor.1	+	6	990	c.726C>T	c.(724-726)ATC>ATT	p.I242I	C2_uc003nyc.2_Silent_p.I182I|C2_uc011doo.1_Silent_p.I149I|C2_uc011dop.1_Silent_p.I181I|C2_uc003nyf.2_Silent_p.I395I|C2_uc010jtk.2_Silent_p.I263I|C2_uc011doq.1_Silent_p.I366I|C2_uc003nyg.2_Silent_p.I172I|C2_uc003nyh.1_Silent_p.I46I	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TCAGAGAGATCCTGAACATCA	0.463													9	131					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31914248	31914248	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31914248G>A	uc003nyj.3	+	2	441	c.163G>A	c.(163-165)GGC>AGC	p.G55S	CFB_uc011dor.1_Missense_Mutation_p.G557S|CFB_uc011dos.1_Missense_Mutation_p.G55S|CFB_uc003nyi.2_Missense_Mutation_p.G55S	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	55	Sushi 1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TCTCCAAGAGGGCCAGGCACT	0.602													28	61					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31914822	31914822	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31914822G>A	uc003nyj.3	+	3	615	c.337G>A	c.(337-339)GAA>AAA	p.E113K	CFB_uc011dor.1_Missense_Mutation_p.E615K|CFB_uc011dos.1_3'UTR|CFB_uc003nyi.2_Missense_Mutation_p.E113K	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	113	Sushi 2.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CGAGAACGGGGAATACTGGCC	0.532													29	61					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31914886	31914886	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31914886G>A	uc003nyj.3	+	3	679	c.401G>A	c.(400-402)GGT>GAT	p.G134D	CFB_uc011dor.1_Missense_Mutation_p.G636D|CFB_uc011dos.1_3'UTR|CFB_uc003nyi.2_Missense_Mutation_p.G134D	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	134	Sushi 2.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TGCTATGACGGTTACACTCTC	0.557													33	82					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31915571	31915571	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31915571C>T	uc003nyj.3	+	5	989	c.711C>T	c.(709-711)TCC>TCT	p.S237S	CFB_uc011dor.1_Silent_p.S739S|CFB_uc003nyi.2_Silent_p.S237S	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	237					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TCCTGTCTTCCCTGACAGAGA	0.547													87	184					0	0	1	0	0
SKIV2L	6499	broad.mit.edu	37	6	31931244	31931244	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31931244C>T	uc003nyn.1	+	14	1847	c.1458C>T	c.(1456-1458)CCC>CCT	p.P486P	SKIV2L_uc011dou.1_Silent_p.P328P|SKIV2L_uc011dov.1_Silent_p.P293P	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	486						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						GCCCCGTGCCCCTGGAGCACT	0.562													18	62					0	0	1	0	0
C4A	720	broad.mit.edu	37	6	31997527	31997527	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31997527C>T	uc011dpd.1	+	29	3912	c.3861C>T	c.(3859-3861)GCC>GCT	p.A1287A	C4A_uc011dpe.1_Silent_p.A1287A	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1287					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						AGGCTGCGGCCTGGCTCACCC	0.667													24	96					0	0	1	0	0
C4A	720	broad.mit.edu	37	6	31997551	31997551	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:31997551C>T	uc011dpd.1	+	29	3936	c.3885C>T	c.(3883-3885)TTC>TTT	p.F1295F	C4A_uc011dpe.1_Silent_p.F1295F	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1295					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						AGGGCAGCTTCCAAGGGGGAT	0.642													14	66					0	0	1	0	0
CYP21A2	1589	broad.mit.edu	37	6	32008204	32008204	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32008204G>A	uc003nze.1	+	8	1079	c.961G>A	c.(961-963)GAG>AAG	p.E321K	CYP21A2_uc003nzf.1_Missense_Mutation_p.E291K	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	320			E -> K (in AH3; simple virilizing form; 4% activity).		glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						ACTGCAGGAGGAGCTAGACCA	0.662													13	38					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32010369	32010369	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32010369G>A	uc003nzl.2	-	40	12269	c.12067C>T	c.(12067-12069)CCC>TCC	p.P4023S	TNXB_uc003nzg.1_Missense_Mutation_p.P454S|TNXB_uc003nzh.1_Missense_Mutation_p.P492S	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	4070	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CTGGGGAAGGGGATCCGCAGC	0.701													6	10					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32012969	32012969	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32012969C>T	uc003nzl.2	-	32	10937	c.10735G>A	c.(10735-10737)GGC>AGC	p.G3579S	TNXB_uc003nzg.1_Missense_Mutation_p.G10S|TNXB_uc003nzh.1_Missense_Mutation_p.G48S	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3626	Fibronectin type-III 28.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCAAAGGGGCCCTGGGCCACG	0.647													15	40					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32014099	32014099	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32014099C>T	uc003nzl.2	-	31	10655	c.10453G>A	c.(10453-10455)GAC>AAC	p.D3485N	TNXB_uc003nzg.1_5'Flank|TNXB_uc003nzh.1_5'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3532	Fibronectin type-III 27.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCTGCCCGTCCGTGTCCCTG	0.632													10	35					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32017145	32017145	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32017145G>A	uc003nzl.2	-	28	9855	c.9653C>T	c.(9652-9654)ACC>ATC	p.T3218I	TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3265	Fibronectin type-III 24.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCCCCCCACGGTGACCTCGCT	0.687													23	38					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32020752	32020753	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32020752_32020753GG>AA	uc003nzl.2	-	26	9005_9006	c.8803_8804CC>TT	c.(8803-8805)CCC>TTC	p.P2935F		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2982					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGTGGGGGCGGGAGTTTCTTCC	0.644													18	52					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32035662	32035662	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32035662G>A	uc003nzl.2	-	18	6522	c.6320C>T	c.(6319-6321)TCC>TTC	p.S2107F		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2179	Fibronectin type-III 14.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CGAGTCAGGGGAGGATCCTGT	0.682													36	57					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32036794	32036794	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32036794C>T	uc003nzl.2	-	16	5909	c.5707G>A	c.(5707-5709)GTG>ATG	p.V1903M		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1985	Fibronectin type-III 12.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCCTCAGTCACCATCCAGGAG	0.582													45	93					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32037544	32037544	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32037544G>A	uc003nzl.2	-	15	5575	c.5373C>T	c.(5371-5373)TCC>TCT	p.S1791S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1873	Fibronectin type-III 11.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGAGGCCCACGGAGTTCTGGG	0.617													6	24					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32037621	32037621	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32037621C>T	uc003nzl.2	-	15	5498	c.5296G>A	c.(5296-5298)GAT>AAT	p.D1766N		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1848					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCAGTATCATCCATAGCACTC	0.602													9	27					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32041710	32041710	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32041710G>A	uc003nzl.2	-	12	4597	c.4395C>T	c.(4393-4395)ACC>ACT	p.T1465T		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1552					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGGCTGGAGGGGTCTCTTCTT	0.522													9	13					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32050005	32050005	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32050005G>A	uc003nzl.2	-	9	3746	c.3544C>T	c.(3544-3546)CCT>TCT	p.P1182S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1269	Fibronectin type-III 5.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGGCCCTCAGGGACAGTCCAG	0.597													12	43					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32053653	32053653	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32053653G>A	uc003nzl.2	-	7	3224	c.3022C>T	c.(3022-3024)CTG>TTG	p.L1008L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1095	Fibronectin type-III 3.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCCCCTGGCAGCACTTCCTCA	0.677													27	54					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32065044	32065044	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32065044G>A	uc003nzl.2	-	3	788	c.586C>T	c.(586-588)CGC>TGC	p.R196C		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	196	EGF-like 2.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CGGACACAGCGACCCTGATCA	0.667													5	15					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32065162	32065163	+	Nonsense_Mutation	DNP	AC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32065162_32065163AC>TT	uc003nzl.2	-	3	669_670	c.467_468GT>AA	c.(466-468)TGT>TAA	p.C156*		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	156	EGF-like 1; incomplete.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCTCACAGGAACAGGTGCAGCG	0.619													12	39					0	0	1	0	0
ATF6B	1388	broad.mit.edu	37	6	32089063	32089063	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32089063G>A	uc003nzn.2	-	6	574	c.541C>T	c.(541-543)CTC>TTC	p.L181F	ATF6B_uc003nzo.2_Missense_Mutation_p.L178F|ATF6B_uc003nzp.1_5'Flank|ATF6B_uc011dpg.1_Missense_Mutation_p.L115F|ATF6B_uc011dph.1_Missense_Mutation_p.L181F	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	181	Cytoplasmic (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TCGGCTGAGAGCAGGGAGGCC	0.537													5	22					0	0	1	0	0
ATF6B	1388	broad.mit.edu	37	6	32089086	32089086	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32089086G>A	uc003nzn.2	-	6	551	c.518C>T	c.(517-519)TCC>TTC	p.S173F	ATF6B_uc003nzo.2_Missense_Mutation_p.S170F|ATF6B_uc003nzp.1_5'Flank|ATF6B_uc011dpg.1_Missense_Mutation_p.S107F|ATF6B_uc011dph.1_Missense_Mutation_p.S173F	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	173	Cytoplasmic (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AGAGTTGACGGAAGAACATGG	0.537													9	21					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32172034	32172034	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32172034C>T	uc003obb.2	-	19	3137	c.2998G>A	c.(2998-3000)GGG>AGG	p.G1000R	NOTCH4_uc003oba.2_5'Flank|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1000	EGF-like 25.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CAGCGTAGCCCCACAAAGCCT	0.592													20	47					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32181595	32181595	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32181595C>T	uc003obb.2	-	14	2329	c.2190G>A	c.(2188-2190)ATG>ATA	p.M730I	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	730	EGF-like 19.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GACAAGCTGTCATCTCCTCAC	0.468													15	38					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32183144	32183144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32183144G>A	uc003obb.2	-	12	2019	c.1880C>T	c.(1879-1881)CCC>CTC	p.P627L	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	627	EGF-like 16.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						AGCACACAGGGGAACCTCACA	0.557													6	17					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32187941	32187941	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32187941G>A	uc003obb.2	-	7	1419	c.1280C>T	c.(1279-1281)CCC>CTC	p.P427L	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.P427L	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	427	EGF-like 10.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GTGGCAGGTGGGCCCCGAATA	0.612													15	39					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188210	32188210	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32188210G>A	uc003obb.2	-	6	1270	c.1131C>T	c.(1129-1131)TTC>TTT	p.F377F	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Silent_p.F377F	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	377	EGF-like 9; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						AGAGGCAGGAGAAAGAGCCCA	0.607													37	136					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188904	32188904	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32188904G>A	uc003obb.2	-	4	789	c.650C>T	c.(649-651)TCC>TTC	p.S217F	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.S217F	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	217	EGF-like 5; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GCACTGGAAGGAGCCCAGGGT	0.657													22	31					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32189084	32189084	+	Missense_Mutation	SNP	C	T	T	rs149758111		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32189084C>T	uc003obb.2	-	4	609	c.470G>A	c.(469-471)CGG>CAG	p.R157Q	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.R157Q	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	157	Extracellular (Potential).|EGF-like 4.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ACAGAAGTCCCGAAGCTGGCA	0.577													20	34					0	0	1	0	0
C6orf10	10665	broad.mit.edu	37	6	32260977	32260977	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32260977C>T	uc011dpy.1	-	12	1646	c.1473G>A	c.(1471-1473)GAG>GAA	p.E491E	C6orf10_uc011dpx.1_Intron	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	491	Lys-rich.					integral to membrane				skin(1)	1						CCTCAAAACTCTCCTTCTTTT	0.239													13	227					0	0	1	0	0
C6orf10	10665	broad.mit.edu	37	6	32261345	32261345	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32261345C>T	uc011dpy.1	-	12	1278	c.1105G>A	c.(1105-1107)GAG>AAG	p.E369K	C6orf10_uc011dpx.1_Missense_Mutation_p.E151K	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	369						integral to membrane				skin(1)	1						TCACTCTTCTCTACCTGGGCT	0.493													68	198					0	0	1	0	0
BTNL2	56244	broad.mit.edu	37	6	32362678	32362678	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32362678C>T	uc003obg.1	-	6	1203	c.1203G>A	c.(1201-1203)ACG>ACA	p.T401T	BTNL2_uc010jty.1_Silent_p.T124T|BTNL2_uc010jtz.1_RNA|BTNL2_uc010jua.1_Silent_p.T191T	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	401	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						ATGATGGTATCGTCTTTCCTT	0.562													25	191					0	0	1	0	0
BTNL2	56244	broad.mit.edu	37	6	32370911	32370911	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32370911G>A	uc003obg.1	-	3	510	c.510C>T	c.(508-510)TTC>TTT	p.F170F	BTNL2_uc010jty.1_Intron|BTNL2_uc010jtz.1_Intron|BTNL2_uc010jua.1_Intron	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	170	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						GGGGCTCTGGGAACCAGCCCC	0.592													6	29					0	0	1	0	0
HLA-DRA	3122	broad.mit.edu	37	6	32411228	32411228	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32411228C>T	uc003obh.2	+	3	676	c.595C>T	c.(595-597)CTT>TTT	p.L199F	HLA-DRA_uc003obi.2_Missense_Mutation_p.L174F	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	199	Ig-like C1-type.|Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						GGATGAGCCTCTTCTCAAGCA	0.493									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				21	90					0	0	1	0	0
HLA-DQA1	3117	broad.mit.edu	37	6	32609298	32609298	+	Silent	SNP	C	T	T	rs36219014		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32609298C>T	uc003obr.2	+	2	347	c.294C>T	c.(292-294)ATC>ATT	p.I98I	HLA-DQA1_uc003obs.2_RNA|HLA-DQA1_uc003obt.1_Silent_p.I98I|HLA-DQA1_uc003obu.2_5'Flank	NM_002122	NP_002113	P01909	DQA1_HUMAN	major histocompatibility complex, class II, DQ	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						ACTTGAACATCATGATTAAAC	0.478													44	23					0	0	1	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32713033	32713033	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32713033G>A	uc003obx.2	+	2	238	c.180G>A	c.(178-180)GTG>GTA	p.V60V		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	60	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AGTTCTATGTGGACCTGGAGA	0.483													48	170					0	0	1	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32713809	32713809	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32713809G>A	uc003obx.2	+	3	631	c.573G>A	c.(571-573)GTG>GTA	p.V191V		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	191	Alpha-2.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACTGCAAGGTGGAGCACTGGG	0.473													15	216					0	0	1	0	0
TAP2	6891	broad.mit.edu	37	6	32782259	32782259	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32782259C>T	uc011dqf.1	-	14	2424	c.2302G>A	c.(2302-2304)GGG>AGG	p.G768R	HLA-DOB_uc003oca.2_Missense_Mutation_p.G161R|HLA-DOB_uc011dqg.1_Missense_Mutation_p.G161R	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	Error:Variant_position_missing_in_Q03519_after_alignment					antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						TCCTCCTGCCCATTCAGGAAC	0.532													66	164					0	0	1	0	0
TAP2	6891	broad.mit.edu	37	6	32798475	32798475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32798475G>A	uc003occ.2	-	7	1412	c.1381C>T	c.(1381-1383)CCC>TCC	p.P461S	TAP2_uc011dqf.1_Missense_Mutation_p.P461S|TAP2_uc003ocb.1_Missense_Mutation_p.P461S|TAP2_uc003ocd.2_Missense_Mutation_p.P461S	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	461	Cytoplasmic (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						AGAGTGGTGGGGGCAAGCGTG	0.537													18	27					0	0	1	0	0
HLA-DMA	3108	broad.mit.edu	37	6	32918430	32918430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32918430G>A	uc003ocm.2	-	2	325	c.239C>T	c.(238-240)CCT>CTT	p.P80L	HLA-DMA_uc011dqm.1_Missense_Mutation_p.P80L	NM_006120	NP_006111	Q31604	Q31604_HUMAN	major histocompatibility complex, class II, DM	80						integral to membrane|MHC class II protein complex					0						GGGCAGGCGAGGCACCCGAGT	0.537													25	110					0	0	1	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32975359	32975359	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32975359C>T	uc003ocr.2	-	3	418	c.342G>A	c.(340-342)CGG>CGA	p.R114R	HLA-DOA_uc010juj.2_Silent_p.R84R|HLA-DOA_uc010jui.2_Silent_p.R114R	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	114	Extracellular (Potential).|Alpha-2.|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						GCACGGTCACCCGTGGAGGCA	0.597													46	86					0	0	1	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32975941	32975941	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:32975941C>T	uc003ocr.2	-	2	256	c.180G>A	c.(178-180)GTG>GTA	p.V60V	HLA-DOA_uc010juj.2_Silent_p.V30V|HLA-DOA_uc010jui.2_Silent_p.V60V	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	60	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						TCTTCAGGTCCACAGAGAACA	0.602													19	48					0	0	1	0	0
HLA-DPB1	3115	broad.mit.edu	37	6	33052914	33052914	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33052914C>T	uc003ocu.1	+	3	611	c.552C>T	c.(550-552)ATC>ATT	p.I184I	HLA-DPB1_uc011dqo.1_RNA|HLA-DPB1_uc011dqp.1_Silent_p.I183I|HLA-DPB1_uc011dqq.1_Silent_p.I80I	NM_002121	NP_002112	P04440	DPB1_HUMAN	major histocompatibility complex, class II, DP	184	Beta-2.|Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex				ovary(1)	1						CCTTCCAGATCCTGGTGATGC	0.562													38	104					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33133532	33133532	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33133532G>A	uc003ocx.1	-	63	4772	c.4544C>T	c.(4543-4545)TCG>TTG	p.S1515L	COL11A2_uc010jul.1_Missense_Mutation_p.S85L|COL11A2_uc003ocy.1_Missense_Mutation_p.S1429L|COL11A2_uc003ocz.1_Missense_Mutation_p.S1408L	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1515					cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TCCATCCACCGAGCGCCGAGT	0.637													35	83					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33134586	33134586	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33134586C>T	uc003ocx.1	-	59	4477	c.4249G>A	c.(4249-4251)GGA>AGA	p.G1417R	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.G1331R|COL11A2_uc003ocz.1_Missense_Mutation_p.G1310R	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1417	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCAATCAGTCCAATGAGACCT	0.607													4	39					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33134870	33134870	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33134870C>T	uc003ocx.1	-	58	4435	c.4207G>A	c.(4207-4209)GAT>AAT	p.D1403N	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.D1317N|COL11A2_uc003ocz.1_Missense_Mutation_p.D1296N	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1403	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GCTCCAGCATCGCCCCGGAGA	0.612													8	68					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33135598	33135598	+	Missense_Mutation	SNP	C	T	T	rs146082418		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33135598C>T	uc003ocx.1	-	55	4220	c.3992G>A	c.(3991-3993)CGA>CAA	p.R1331Q	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.R1245Q|COL11A2_uc003ocz.1_Missense_Mutation_p.R1224Q	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1331	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCCTCCTTGTCGCCCCTCGGA	0.657													13	30					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33141495	33141495	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33141495C>T	uc003ocx.1	-	35	2839	c.2611G>A	c.(2611-2613)GGG>AGG	p.G871R	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.G785R|COL11A2_uc003ocz.1_Missense_Mutation_p.G764R	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	871	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCAGGGGGCCCATGGGGGCCA	0.627													10	19					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33144259	33144259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33144259G>A	uc003ocx.1	-	27	2348	c.2120C>T	c.(2119-2121)CCC>CTC	p.P707L	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.P621L|COL11A2_uc003ocz.1_Missense_Mutation_p.P600L	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	707	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						AGGTCCAGAGGGACCCTGGAA	0.547													10	23					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33152024	33152024	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33152024G>A	uc003ocx.1	-	8	1245	c.1017C>T	c.(1015-1017)CCC>CCT	p.P339P	COL11A2_uc003ocy.1_Intron|COL11A2_uc003ocz.1_Intron	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	339	Nonhelical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GCCCTTCAGGGGGGTCTGTGC	0.612													37	92					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33154504	33154504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33154504C>T	uc003ocx.1	-	5	926	c.698G>A	c.(697-699)AGG>AAG	p.R233K	COL11A2_uc003ocy.1_Missense_Mutation_p.R233K|COL11A2_uc003ocz.1_Missense_Mutation_p.R233K|COL11A2_uc003oda.2_Missense_Mutation_p.R233K	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	233	Nonhelical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GGGTCTTTCCCTCTGGCCCCC	0.562													48	102					0	0	1	0	0
B3GALT4	8705	broad.mit.edu	37	6	33246057	33246057	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33246057C>T	uc003odr.2	+	1	1141	c.861C>T	c.(859-861)CTC>CTT	p.L287L		NM_003782	NP_003773	O96024	B3GT4_HUMAN	UDP-Gal:betaGlcNAc beta	287	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	ganglioside galactosyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)|breast(1)	2						CACCCCTTCTCCCATTAGAGG	0.627													25	57					0	0	1	0	0
TAPBP	6892	broad.mit.edu	37	6	33281164	33281164	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33281164G>A	uc003odx.1	-	3	470	c.299C>T	c.(298-300)CCC>CTC	p.P100L	TAPBP_uc010jus.1_Missense_Mutation_p.P100L|TAPBP_uc003ody.2_Missense_Mutation_p.P100L|TAPBP_uc003odz.2_Missense_Mutation_p.P100L|TAPBP_uc010jut.1_Intron|TAPBP_uc011drc.1_Missense_Mutation_p.P100L	NM_003190	NP_003181	O15533	TPSN_HUMAN	tapasin isoform 1 precursor	100	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|immune response|peptide antigen stabilization|protein complex assembly|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|MHC class I peptide loading complex|microsome	MHC class I protein binding|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|unfolded protein binding			ovary(1)	1						CGCAGAGGCGGGGAGAGGCAC	0.706													4	31					0	0	1	0	0
DAXX	1616	broad.mit.edu	37	6	33289581	33289581	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33289581G>A	uc003oec.2	-	2	326	c.122C>T	c.(121-123)TCC>TTC	p.S41F	DAXX_uc011drd.1_Intron|DAXX_uc011dre.1_Missense_Mutation_p.S53F|DAXX_uc003oed.2_Missense_Mutation_p.S41F|DAXX_uc010juw.2_5'UTR	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	41	Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						AGGCTCAGAGGAGCTAGGGGC	0.587			Mis|F|N		Pancreatic neuroendocrine tumors								116	224					0	0	1	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333357	33333357	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33333357C>T	uc003shx.2	-	1	783	c.649G>A	c.(649-651)GAA>AAA	p.E217K		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						TCAAGAAATTCCTTCACAGCT	0.557													7	21					0	0	1	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333697	33333697	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33333697C>T	uc003shx.2	-	1	443	c.309G>A	c.(307-309)AAG>AAA	p.K103K		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						GGATCCCGTTCTTCATTTCAT	0.582													8	125					0	0	1	0	0
KIFC1	3833	broad.mit.edu	37	6	33373143	33373143	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33373143C>T	uc003oef.3	+	7	1721	c.1271C>T	c.(1270-1272)CCT>CTT	p.P424L	KIFC1_uc011drf.1_Missense_Mutation_p.P416L	NM_002263	NP_002254	Q9BW19	KIFC1_HUMAN	kinesin family member C1	424	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity				0						GAGGGTGGGCCTGGGGGAGAC	0.602													21	64					0	0	1	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33399952	33399952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33399952C>T	uc011dri.1	+	4	505	c.310C>T	c.(310-312)CGC>TGC	p.R104C	SYNGAP1_uc003oeo.1_Missense_Mutation_p.R89C|SYNGAP1_uc010juy.2_Missense_Mutation_p.R89C	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	104					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						CCACTTGGGTCGCTCGAGGAG	0.632													16	35					0	0	1	0	0
ZBTB9	221504	broad.mit.edu	37	6	33423832	33423832	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33423832G>A	uc003oeq.2	+	2	1223	c.955G>A	c.(955-957)GAA>AAA	p.E319K		NM_152735	NP_689948	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	319	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGGGGACACTGAAGGGAATGG	0.547													15	96					0	0	1	0	0
ITPR3	3710	broad.mit.edu	37	6	33623571	33623571	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33623571C>T	uc011drk.1	+	3	408	c.189C>T	c.(187-189)AAC>AAT	p.N63N		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	63	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GCCCCATGAACCGCTACTCGG	0.582													5	48					0	0	1	0	0
ITPR3	3710	broad.mit.edu	37	6	33632886	33632886	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33632886C>T	uc011drk.1	+	13	1524	c.1305C>T	c.(1303-1305)CCC>CCT	p.P435P		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	435	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						TGTCAGTGCCCGTGTCTGAGA	0.582													25	123					0	0	1	0	0
ITPR3	3710	broad.mit.edu	37	6	33648129	33648129	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33648129C>T	uc011drk.1	+	32	4467	c.4248C>T	c.(4246-4248)TTC>TTT	p.F1416F		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	1416	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						ATGTGAACTTCGTGAACCACT	0.602													14	38					0	0	1	0	0
IP6K3	117283	broad.mit.edu	37	6	33693290	33693290	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33693290C>T	uc010jvf.2	-	6	1229	c.693G>A	c.(691-693)AAG>AAA	p.K231K	IP6K3_uc003ofb.2_Silent_p.K231K	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	231					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						GGCGGGCCTTCTTCTCCTCCG	0.607													13	36					0	0	1	0	0
IP6K3	117283	broad.mit.edu	37	6	33695869	33695869	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:33695869C>T	uc010jvf.2	-	4	944	c.408G>A	c.(406-408)AAG>AAA	p.K136K	IP6K3_uc003ofb.2_Silent_p.K136K	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	136					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						CTCACCTCTCCTTGGGTGAGC	0.652													11	27					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34003641	34003641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34003641G>A	uc003oir.3	-	8	2416	c.2246C>T	c.(2245-2247)TCG>TTG	p.S749L	GRM4_uc011dsn.1_Missense_Mutation_p.S702L|GRM4_uc010jvh.2_Missense_Mutation_p.S749L|GRM4_uc010jvi.2_Missense_Mutation_p.S441L|GRM4_uc003oio.2_Missense_Mutation_p.S441L|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.S609L|GRM4_uc003oiq.2_Missense_Mutation_p.S616L|GRM4_uc011dsm.1_Missense_Mutation_p.S580L	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	749	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CGACAGGTCCGAGATGTCACA	0.617													12	66					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34003736	34003736	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34003736C>T	uc003oir.3	-	8	2321	c.2151G>A	c.(2149-2151)TGG>TGA	p.W717*	GRM4_uc011dsn.1_Nonsense_Mutation_p.W670*|GRM4_uc010jvh.2_Nonsense_Mutation_p.W717*|GRM4_uc010jvi.2_Nonsense_Mutation_p.W409*|GRM4_uc003oio.2_Nonsense_Mutation_p.W409*|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Nonsense_Mutation_p.W577*|GRM4_uc003oiq.2_Nonsense_Mutation_p.W584*|GRM4_uc011dsm.1_Nonsense_Mutation_p.W548*	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	717	Helical; Name=4; (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CCACCACAAACCACACACAGA	0.642													18	109					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34003955	34003955	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34003955G>A	uc003oir.3	-	8	2102	c.1932C>T	c.(1930-1932)ATC>ATT	p.I644I	GRM4_uc011dsn.1_Silent_p.I597I|GRM4_uc010jvh.2_Silent_p.I644I|GRM4_uc010jvi.2_Silent_p.I336I|GRM4_uc003oio.2_Silent_p.I336I|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Silent_p.I504I|GRM4_uc003oiq.2_Silent_p.I511I|GRM4_uc011dsm.1_Silent_p.I475I	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	644	Helical; Name=2; (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CGGGCTCAGCGATCATGAGGA	0.602													20	38					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34004133	34004133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34004133G>A	uc003oir.3	-	8	1924	c.1754C>T	c.(1753-1755)TCG>TTG	p.S585L	GRM4_uc011dsn.1_Missense_Mutation_p.S538L|GRM4_uc010jvh.2_Missense_Mutation_p.S585L|GRM4_uc010jvi.2_Missense_Mutation_p.S277L|GRM4_uc003oio.2_Missense_Mutation_p.S277L|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.S445L|GRM4_uc003oiq.2_Missense_Mutation_p.S452L|GRM4_uc011dsm.1_Missense_Mutation_p.S416L	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	585	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	GGCCCAGGGCGAGCCCCACTC	0.637													12	20					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34004285	34004285	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34004285C>T	uc003oir.3	-	8	1772	c.1602G>A	c.(1600-1602)AAG>AAA	p.K534K	GRM4_uc011dsn.1_Silent_p.K487K|GRM4_uc010jvh.2_Silent_p.K534K|GRM4_uc010jvi.2_Silent_p.K226K|GRM4_uc003oio.2_Silent_p.K226K|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Silent_p.K394K|GRM4_uc003oiq.2_Silent_p.K401K|GRM4_uc011dsm.1_Silent_p.K365K	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	534	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	AAGGCATGCCCTTCACTGTCT	0.642													18	47					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34026758	34026758	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34026758G>A	uc003oir.3	-	4	1190	c.1020C>T	c.(1018-1020)TCC>TCT	p.S340S	GRM4_uc011dsn.1_Silent_p.S340S|GRM4_uc010jvh.2_Silent_p.S340S|GRM4_uc010jvi.2_Silent_p.S32S|GRM4_uc003oio.2_Silent_p.S32S|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Silent_p.S200S|GRM4_uc003oiq.2_Silent_p.S207S|GRM4_uc011dsm.1_Silent_p.S171S	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	340	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	TACCTCGTACGGACATCCTCT	0.463													7	24					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34100769	34100769	+	Missense_Mutation	SNP	G	A	A	rs452752		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34100769G>A	uc003oir.3	-	1	675	c.505C>T	c.(505-507)CTT>TTT	p.L169F	GRM4_uc011dsn.1_Missense_Mutation_p.L169F|GRM4_uc010jvh.2_Missense_Mutation_p.L169F|GRM4_uc010jvi.2_5'UTR|GRM4_uc010jvk.1_Missense_Mutation_p.L88F	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	169	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	AAGAGGCGAAGGATGTTGGCC	0.632													17	29					0	0	1	0	0
PACSIN1	29993	broad.mit.edu	37	6	34497596	34497596	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34497596C>T	uc003ojo.2	+	6	972	c.766C>T	c.(766-768)CTC>TTC	p.L256F	PACSIN1_uc003ojp.2_Missense_Mutation_p.L256F	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	256					endocytosis		protein kinase activity				0						CAAACGGCACCTCAACCTGGC	0.582													6	14					0	0	1	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34789448	34789448	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34789448C>T	uc003oju.3	+	2	297	c.63C>T	c.(61-63)TCC>TCT	p.S21S	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	21										ovary(3)	3						AGAATCTTTCCCCAGACAAAA	0.443													5	60					0	0	1	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34826110	34826110	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:34826110C>T	uc003oju.3	+	14	2211	c.1977C>T	c.(1975-1977)AGC>AGT	p.S659S	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	659										ovary(3)	3						GTGGCTTTAGCCTTCTGCACA	0.493													48	123					0	0	1	0	0
TCP11	6954	broad.mit.edu	37	6	35086057	35086057	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35086057C>T	uc003okd.2	-	10	1721	c.1540G>A	c.(1540-1542)GAG>AAG	p.E514K	TCP11_uc003ojz.1_Missense_Mutation_p.E439K|TCP11_uc003oka.2_Missense_Mutation_p.E439K|TCP11_uc003okb.2_Missense_Mutation_p.E438K|TCP11_uc003okc.2_Missense_Mutation_p.E438K|TCP11_uc011dsu.1_Missense_Mutation_p.E496K|TCP11_uc011dsv.1_Missense_Mutation_p.E463K|TCP11_uc011dsw.1_Missense_Mutation_p.E468K	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	501					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						CAAACAGACTCCACTTTTGTT	0.512													11	109					0	0	1	0	0
DEF6	50619	broad.mit.edu	37	6	35289050	35289050	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35289050C>T	uc003okk.2	+	11	1798	c.1759C>T	c.(1759-1761)CGC>TGC	p.R587C	DEF6_uc010jvs.2_Missense_Mutation_p.R562C|DEF6_uc010jvt.2_Missense_Mutation_p.R332C	NM_022047	NP_071330	Q9H4E7	DEFI6_HUMAN	differentially expressed in FDCP 6 homolog	587						cytoplasm|nucleus|plasma membrane					0						GCGCCTGACCCGCTGGGGATC	0.642													57	140					0	0	1	0	0
PPARD	5467	broad.mit.edu	37	6	35387967	35387967	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35387967C>T	uc003okm.2	+	4	503	c.194C>T	c.(193-195)GCC>GTC	p.A65V	PPARD_uc003okl.2_Missense_Mutation_p.A65V|PPARD_uc003okn.2_Missense_Mutation_p.A65V|PPARD_uc011dtb.1_Missense_Mutation_p.A26V|PPARD_uc011dtc.1_Intron|PPARD_uc010jvv.1_Intron	NM_006238	NP_006229	Q03181	PPARD_HUMAN	peroxisome proliferative activated receptor,	65					apoptosis|axon ensheathment|cholesterol metabolic process|decidualization|embryo implantation|fatty acid beta-oxidation|fatty acid transport|generation of precursor metabolites and energy|glucose metabolic process|glucose transport|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fat cell differentiation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|linoleic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1					Icosapent(DB00159)|Sulindac(DB00605)|Treprostinil(DB00374)	TGTGACGGGGCCTCATGCGGC	0.637													19	43					0	0	1	0	0
PPARD	5467	broad.mit.edu	37	6	35392492	35392492	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35392492C>T	uc003okm.2	+	7	1323	c.1014C>T	c.(1012-1014)TTC>TTT	p.F338F	PPARD_uc003okl.2_Silent_p.F338F|PPARD_uc003okn.2_Silent_p.F338F|PPARD_uc011dtb.1_Silent_p.F299F|PPARD_uc011dtc.1_Silent_p.F240F	NM_006238	NP_006229	Q03181	PPARD_HUMAN	peroxisome proliferative activated receptor,	338	Ligand-binding.				apoptosis|axon ensheathment|cholesterol metabolic process|decidualization|embryo implantation|fatty acid beta-oxidation|fatty acid transport|generation of precursor metabolites and energy|glucose metabolic process|glucose transport|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fat cell differentiation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|linoleic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1					Icosapent(DB00159)|Sulindac(DB00605)|Treprostinil(DB00374)	CTGTCAAGTTCAACGCCCTGG	0.547													28	38					0	0	1	0	0
TULP1	7287	broad.mit.edu	37	6	35473605	35473605	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35473605C>T	uc003okv.3	-	11	1037	c.1025G>A	c.(1024-1026)CGA>CAA	p.R342Q	TULP1_uc003okw.3_Missense_Mutation_p.R289Q	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	342					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						GCTCCGTTTTCGTTTCCTGCC	0.567													27	52					0	0	1	0	0
TULP1	7287	broad.mit.edu	37	6	35477696	35477696	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35477696C>T	uc003okv.3	-	6	521	c.509G>A	c.(508-510)GGA>GAA	p.G170E	TULP1_uc003okw.3_Missense_Mutation_p.G117E	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	170					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						GTCAGGGCTTCCCAGGTCTCC	0.567													39	106					0	0	1	0	0
FKBP5	2289	broad.mit.edu	37	6	35544969	35544969	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35544969C>T	uc011dte.1	-	10	1271	c.1068G>A	c.(1066-1068)AGG>AGA	p.R356R	FKBP5_uc003okx.2_Silent_p.R356R|FKBP5_uc011dtf.1_Silent_p.R177R|FKBP5_uc003oky.2_Silent_p.R356R	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	356	TPR 3.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						CTTCACCCCTCCTATACAAGC	0.453													17	223					0	0	1	0	0
FKBP5	2289	broad.mit.edu	37	6	35545003	35545003	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35545003C>T	uc011dte.1	-	10	1237	c.1034G>A	c.(1033-1035)GGA>GAA	p.G345E	FKBP5_uc003okx.2_Missense_Mutation_p.G345E|FKBP5_uc011dtf.1_Missense_Mutation_p.G166E|FKBP5_uc003oky.2_Missense_Mutation_p.G345E	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	345	TPR 2.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						ACTGTCCAGTCCAAGGGCCTA	0.433													51	174					0	0	1	0	0
FKBP5	2289	broad.mit.edu	37	6	35547981	35547981	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35547981C>T	uc011dte.1	-	9	1061	c.858G>A	c.(856-858)CAG>CAA	p.Q286Q	FKBP5_uc003okx.2_Silent_p.Q286Q|FKBP5_uc011dtf.1_Silent_p.Q107Q|FKBP5_uc003oky.2_Silent_p.Q286Q	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	286	TPR 1.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						GAATCACCGCCTGCATGTATT	0.428													22	246					0	0	1	0	0
FKBP5	2289	broad.mit.edu	37	6	35587930	35587930	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35587930C>T	uc011dte.1	-	4	575	c.372G>A	c.(370-372)TCG>TCA	p.S124S	FKBP5_uc003okx.2_Silent_p.S124S|FKBP5_uc011dtf.1_Intron|FKBP5_uc003oky.2_Silent_p.S124S|FKBP5_uc003okz.2_Silent_p.S124S	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	124	PPIase FKBP-type 1.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						GAGTTGCATTCGAGGGAATTT	0.453													33	83					0	0	1	0	0
C6orf127	340204	broad.mit.edu	37	6	35754847	35754847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35754847G>A	uc003old.3	+	2	229	c.172G>A	c.(172-174)GAG>AAG	p.E58K		NM_001010886	NP_001010886	A2RUU4	CF127_HUMAN	hypothetical protein LOC340204 precursor	58					digestion|lipid catabolic process	extracellular region	enzyme activator activity			skin(1)	1						AGACAATTGCGAGTCGCACTG	0.657													3	21					0	0	1	0	0
CLPS	1208	broad.mit.edu	37	6	35765005	35765005	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35765005G>A	uc003ole.1	-	1	98	c.61C>T	c.(61-63)CCC>TCC	p.P21S	CLPS_uc003olf.1_Missense_Mutation_p.P21S	NM_001832	NP_001823	P04118	COL_HUMAN	colipase preproprotein	21					lipid catabolic process|lipid digestion|retinoid metabolic process|steroid metabolic process	extracellular region					0						ATCCCCCGGGGGCCAGGAGCT	0.592													24	135					0	0	1	0	0
SRPK1	6732	broad.mit.edu	37	6	35837432	35837432	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35837432G>A	uc003olj.2	-	11	1361	c.1238C>T	c.(1237-1239)TCT>TTT	p.S413F	SRPK1_uc011dtg.1_Missense_Mutation_p.S397F|SRPK1_uc003olh.2_Missense_Mutation_p.S306F|SRPK1_uc003oli.2_Missense_Mutation_p.S306F	NM_003137	NP_003128	Q96SB4	SRPK1_HUMAN	SFRS protein kinase 1	413	Protein kinase.				cell differentiation|chromosome segregation|interspecies interaction between organisms|intracellular protein kinase cascade|mRNA processing|negative regulation of viral genome replication|positive regulation of viral genome replication|regulation of mRNA processing|RNA splicing	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						AGGTGTACAAGAGTCTGTTTC	0.418													15	44					0	0	1	0	0
SLC26A8	116369	broad.mit.edu	37	6	35923030	35923030	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35923030G>A	uc003olm.2	-	17	2242	c.2131C>T	c.(2131-2133)CCT>TCT	p.P711S	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.P293S|SLC26A8_uc003oln.2_Missense_Mutation_p.P711S|SLC26A8_uc003oll.2_Missense_Mutation_p.P606S	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	711	Interaction with RACGAP1.|STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TCTGAGTAAGGGATGAGTGAT	0.507													27	63					0	0	1	0	0
SLC26A8	116369	broad.mit.edu	37	6	35923043	35923043	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35923043C>T	uc003olm.2	-	17	2229	c.2118G>A	c.(2116-2118)AGG>AGA	p.R706R	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Silent_p.R288R|SLC26A8_uc003oln.2_Silent_p.R706R|SLC26A8_uc003oll.2_Silent_p.R601R	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	706	Interaction with RACGAP1.|STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TGAGTGATCTCCTCCCCTGGC	0.517													29	55					0	0	1	0	0
SLC26A8	116369	broad.mit.edu	37	6	35927567	35927567	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35927567C>T	uc003olm.2	-	15	1766	c.1655G>A	c.(1654-1656)GGG>GAG	p.G552E	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.G134E|SLC26A8_uc003oln.2_Missense_Mutation_p.G552E|SLC26A8_uc003oll.2_Missense_Mutation_p.G447E	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	552	STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						GATTTTCACCCCAGGAATGGT	0.383													29	62					0	0	1	0	0
SLC26A8	116369	broad.mit.edu	37	6	35945118	35945118	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35945118G>A	uc003olm.2	-	9	1147	c.1036C>T	c.(1036-1038)CCT>TCT	p.P346S	SLC26A8_uc003oln.2_Missense_Mutation_p.P346S|SLC26A8_uc003oll.2_Missense_Mutation_p.P241S	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	346	Extracellular (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						GGTGTTACAGGAAGCAGAAAG	0.423													23	85					0	0	1	0	0
SLC26A8	116369	broad.mit.edu	37	6	35949969	35949969	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:35949969G>A	uc003olm.2	-	8	1065	c.954C>T	c.(952-954)TTC>TTT	p.F318F	SLC26A8_uc003oln.2_Silent_p.F318F|SLC26A8_uc003oll.2_Silent_p.F213F	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	318	Helical; (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CAATCACAGTGAAGCCAATAA	0.418													37	86					0	0	1	0	0
MAPK14	1432	broad.mit.edu	37	6	36040749	36040749	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36040749C>T	uc003olp.2	+	4	886	c.405C>T	c.(403-405)CTC>CTT	p.L135L	MAPK14_uc011dth.1_Silent_p.L135L|MAPK14_uc003olo.2_Silent_p.L135L|MAPK14_uc003olq.2_Silent_p.L135L|MAPK14_uc003olr.2_Silent_p.L135L|MAPK14_uc011dti.1_Silent_p.L58L	NM_001315	NP_001306	Q16539	MK14_HUMAN	mitogen-activated protein kinase 14 isoform 1	135	Protein kinase.				activation of MAPK activity|cellular component movement|cellular response to ionizing radiation|chemotaxis|innate immune response|mRNA metabolic process|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of muscle cell differentiation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|signal transduction in response to DNA damage|stress-activated MAPK cascade|stress-induced premature senescence|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|MAP kinase kinase activity|protein binding			ovary(2)|stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	6						ACCAAATTCTCCGAGGTCTAA	0.378													15	40					0	0	1	0	0
MAPK13	5603	broad.mit.edu	37	6	36099123	36099123	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36099123C>T	uc003ols.2	+	2	293	c.195C>T	c.(193-195)TTC>TTT	p.F65F	MAPK13_uc003olt.2_RNA	NM_002754	NP_002745	O15264	MK13_HUMAN	mitogen-activated protein kinase 13	65	Protein kinase.				cell cycle|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|positive regulation of interleukin-6 production|Ras protein signal transduction|response to stress		ATP binding|MAP kinase activity|protein binding			breast(2)|central_nervous_system(1)	3						CCGAGATCTTCGCCAAGCGCG	0.662													13	80					0	0	1	0	0
BRPF3	27154	broad.mit.edu	37	6	36181711	36181711	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36181711C>T	uc003olv.3	+	8	2761	c.2537C>T	c.(2536-2538)TCC>TTC	p.S846F	BRPF3_uc010jwb.2_Intron|BRPF3_uc011dtj.1_Intron|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Intron	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	846					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CCTGCACCTTCCTTGTCTGAG	0.493													15	148					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36259149	36259149	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36259149C>T	uc010jwf.2	+	2	258	c.258C>T	c.(256-258)TTC>TTT	p.F86F	PNPLA1_uc003olw.1_5'UTR|PNPLA1_uc010jwe.1_5'UTR	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	86	Patatin.				lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						AGAAATCCTTCCTGGGGCCCT	0.592													19	51					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36260883	36260883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36260883C>T	uc010jwf.2	+	3	484	c.484C>T	c.(484-486)CCC>TCC	p.P162S	PNPLA1_uc003olw.1_Missense_Mutation_p.P67S|PNPLA1_uc010jwe.1_Missense_Mutation_p.P67S	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	162	Patatin.				lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						TGGCCTCATCCCCCCGACTTA	0.652													29	71					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36269678	36269678	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36269678C>T	uc010jwf.2	+	6	816	c.816C>T	c.(814-816)TTC>TTT	p.F272F	PNPLA1_uc003olw.1_Silent_p.F177F|PNPLA1_uc010jwe.1_Silent_p.F186F	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	272					lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						GAGTGATTTTCCCCCGGGTGG	0.517											OREG0017382	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	66					0	0	1	0	0
C6orf222	389384	broad.mit.edu	37	6	36287141	36287141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36287141C>T	uc003oly.2	-	11	2093	c.1915G>A	c.(1915-1917)GAC>AAC	p.D639N		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	639										skin(2)|ovary(1)|breast(1)	4						ACCGGCTGGTCCTCCCTGTAT	0.542													32	99					0	0	1	0	0
STK38	11329	broad.mit.edu	37	6	36492232	36492232	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36492232G>A	uc003omg.2	-	3	780	c.192C>T	c.(190-192)CTC>CTT	p.L64L	STK38_uc003omh.2_Silent_p.L64L|STK38_uc003omi.2_Silent_p.L64L	NM_007271	NP_009202	Q15208	STK38_HUMAN	serine/threonine kinase 38	64	Interaction with S100B.				intracellular protein kinase cascade|negative regulation of MAP kinase activity	cytoplasm|MLL5-L complex	ATP binding|magnesium ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6						CTGATCTCCGGAGTCGTTTCT	0.393													28	72					0	0	1	0	0
CPNE5	57699	broad.mit.edu	37	6	36714235	36714235	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36714235G>A	uc003omr.1	-	16	1205	c.1138C>T	c.(1138-1140)CCT>TCT	p.P380S	CPNE5_uc003omp.1_Missense_Mutation_p.P88S|CPNE5_uc010jwn.1_Missense_Mutation_p.P30S|CPNE5_uc003omq.1_Missense_Mutation_p.P30S	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	380	VWFA.									skin(1)	1						CCCAGGGCAGGGAACATCTTG	0.627													17	86					0	0	1	0	0
CPNE5	57699	broad.mit.edu	37	6	36716041	36716041	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36716041G>A	uc003omr.1	-	15	1042	c.975C>T	c.(973-975)ACC>ACT	p.T325T	CPNE5_uc003omp.1_Silent_p.T33T|CPNE5_uc010jwn.1_5'UTR|CPNE5_uc003omq.1_5'UTR	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	325										skin(1)	1						AGTTGATCTGGGTCCTAGAAG	0.537													14	117					0	0	1	0	0
CPNE5	57699	broad.mit.edu	37	6	36766013	36766013	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36766013G>A	uc003omr.1	-	6	400	c.333C>T	c.(331-333)TTC>TTT	p.F111F	CPNE5_uc003oms.1_Silent_p.F73F	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	111	C2 1.									skin(1)	1						CCTGGCCCAGGAAATCCTGCA	0.602													8	20					0	0	1	0	0
C6orf89	221477	broad.mit.edu	37	6	36882161	36882161	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36882161C>T	uc003omx.2	+	5	789	c.505C>T	c.(505-507)CTG>TTG	p.L169L	C6orf89_uc003omv.2_Silent_p.L63L|C6orf89_uc003omw.2_Silent_p.L176L|C6orf89_uc011dtr.1_Silent_p.L63L|C6orf89_uc003omy.2_Silent_p.L3L	NM_152734	NP_689947	Q6UWU4	CF089_HUMAN	hypothetical protein LOC221477	169						integral to membrane				ovary(1)	1						GGTGATGCTCCTGGAAGACGC	0.542													19	60					0	0	1	0	0
PI16	221476	broad.mit.edu	37	6	36930864	36930864	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36930864C>T	uc003ona.2	+	5	1074	c.746C>T	c.(745-747)TCA>TTA	p.S249L	PI16_uc003omz.1_Intron|PI16_uc003onb.2_Intron|PI16_uc011dts.1_Missense_Mutation_p.S20L	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	249	Extracellular (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						ACAGAGGTCTCAGGCTCCCTG	0.577													9	155					0	0	1	0	0
FGD2	221472	broad.mit.edu	37	6	36982421	36982421	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36982421G>A	uc010jwp.1	+	7	995	c.824_splice	c.e7-1	p.K275_splice	FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_Splice_Site|FGD2_uc003oni.1_Splice_Site_p.K81_splice	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2						actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						GCCCCTTTCAGAAGCCCTGGA	0.597													16	38					0	0	1	0	0
FGD2	221472	broad.mit.edu	37	6	36982475	36982475	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36982475G>A	uc010jwp.1	+	7	1048	c.877G>A	c.(877-879)GAG>AAG	p.E293K	FGD2_uc003ong.2_Missense_Mutation_p.E15K|FGD2_uc011dtv.1_5'UTR|FGD2_uc003oni.1_Missense_Mutation_p.E99K	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	293					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						AGCCATCACTGAGATGGTAAG	0.607													15	29					0	0	1	0	0
FGD2	221472	broad.mit.edu	37	6	36982672	36982673	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36982672_36982673GG>AA	uc010jwp.1	+	8	1058_1059	c.887_888GG>AA	c.(886-888)CGG>CAA	p.R296Q	FGD2_uc003ong.2_Missense_Mutation_p.R18Q|FGD2_uc011dtv.1_5'UTR|FGD2_uc003oni.1_Missense_Mutation_p.R102Q	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	296					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						CCCTAGGAGCGGCTGCAGGACC	0.639													18	49					0	0	1	0	0
FGD2	221472	broad.mit.edu	37	6	36995279	36995279	+	Silent	SNP	G	A	A	rs147433704		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:36995279G>A	uc010jwp.1	+	15	1851	c.1680G>A	c.(1678-1680)AAG>AAA	p.K560K	FGD2_uc003ong.2_Silent_p.K282K|FGD2_uc011dtv.1_Silent_p.K188K|FGD2_uc003onj.1_Silent_p.K137K	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	560	PH 2.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						AGTGGGGCAAGAGCGGCCCCC	0.637													27	133					0	0	1	0	0
RNF8	9025	broad.mit.edu	37	6	37328278	37328278	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:37328278C>T	uc003onq.3	+	2	361	c.168C>T	c.(166-168)CCC>CCT	p.P56P	RNF8_uc003onr.3_Silent_p.P56P|RNF8_uc011dtx.1_5'UTR	NM_003958	NP_003949	O76064	RNF8_HUMAN	ring finger protein 8 isoform 1	56	FHA.				cell division|double-strand break repair|histone H2A ubiquitination|histone H2B ubiquitination|mitosis|positive regulation of DNA repair|response to ionizing radiation	midbody|nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						AAATCTGCCCCCTGATGATTT	0.443													25	82					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38704876	38704876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38704876G>A	uc003ooe.1	+	4	745	c.145G>A	c.(145-147)GGA>AGA	p.G49R		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGCGTCGAAAGGACTCTTAAA	0.398													31	92					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38723748	38723748	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38723748G>A	uc003ooe.1	+	8	1357	c.757G>A	c.(757-759)GTT>ATT	p.V253I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TCAATGTTAGGTTTCCATGGC	0.303													23	52					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38743715	38743715	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38743715C>T	uc003ooe.1	+	11	1899	c.1299C>T	c.(1297-1299)ATC>ATT	p.I433I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGACAAAAATCAATGGTTTAG	0.308													46	117					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38750779	38750779	+	Splice_Site	SNP	G	A	A	rs35125773		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38750779G>A	uc003ooe.1	+	15	2209	c.1609_splice	c.e15-1	p.K537_splice		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAAAAAAACAGAAAAACTCAG	0.323													17	52					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38750845	38750845	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38750845C>T	uc003ooe.1	+	15	2274	c.1674C>T	c.(1672-1674)TCC>TCT	p.S558S		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACAAGATCTCCTATGTGCTGG	0.403													24	55					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38758068	38758068	+	Missense_Mutation	SNP	G	A	A	rs145862170		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38758068G>A	uc003ooe.1	+	18	2617	c.2017G>A	c.(2017-2019)GAA>AAA	p.E673K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTTCTAGGTGGAATCTGTGTT	0.353													19	139					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38783393	38783393	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38783393G>A	uc003ooe.1	+	24	3432	c.2832G>A	c.(2830-2832)GTG>GTA	p.V944V		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTACTGACGTGACCCATCAAA	0.453													12	49					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38793988	38793988	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38793988C>T	uc003ooe.1	+	27	3853	c.3253C>T	c.(3253-3255)CGA>TGA	p.R1085*		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8									p.R1085Q(2)		skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GTTACTCTGTCGATATCTGAA	0.328													16	44					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38802355	38802355	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38802355G>A	uc003ooe.1	+	30	4252	c.3652G>A	c.(3652-3654)GAA>AAA	p.E1218K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTCCTTACAGGAAGGACCTAT	0.323													39	105					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38805726	38805726	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38805726C>T	uc003ooe.1	+	31	4323	c.3723C>T	c.(3721-3723)TTC>TTT	p.F1241F		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGGCCAGTTTCGATGATCTGT	0.269													20	50					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38813452	38813452	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38813452G>A	uc003ooe.1	+	34	4897	c.4297G>A	c.(4297-4299)GGA>AGA	p.G1433R		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGCATTTAAGGGAAAAGGAGA	0.418													17	126					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38830179	38830179	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38830179C>T	uc003ooe.1	+	42	6204	c.5604C>T	c.(5602-5604)GTC>GTT	p.V1868V		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AATATGTGGTCGTGTTCAATT	0.423													43	129					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38830220	38830220	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38830220G>A	uc003ooe.1	+	42	6245	c.5645G>A	c.(5644-5646)GGA>GAA	p.G1882E		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGAGGCCTAGGAAGGATTTTC	0.348													40	91					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38835841	38835841	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38835841C>T	uc003ooe.1	+	46	6646	c.6046C>T	c.(6046-6048)CAT>TAT	p.H2016Y		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATCTCAGGTTCATTATGACTT	0.373													21	75					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38840443	38840443	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38840443G>A	uc003ooe.1	+	48	7071	c.6471G>A	c.(6469-6471)ATG>ATA	p.M2157I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAATGCGAATGAATCCAAAAG	0.453													27	73					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38843566	38843566	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38843566C>T	uc003ooe.1	+	51	7769	c.7169C>T	c.(7168-7170)TCA>TTA	p.S2390L		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCTAAAGGCTCAAATCAAACC	0.358													20	56					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38851680	38851680	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38851680G>A	uc003ooe.1	+	54	8114	c.7514G>A	c.(7513-7515)CGA>CAA	p.R2505Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GTGGATAAGCGAATTGGAAGC	0.363													39	72					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38858489	38858489	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38858489G>A	uc003ooe.1	+	56	8484	c.7884G>A	c.(7882-7884)ATG>ATA	p.M2628I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TATGTGAGATGATTGTGAATT	0.358													43	97					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38862636	38862636	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38862636G>A	uc003ooe.1	+	57	8692	c.8092G>A	c.(8092-8094)GAC>AAC	p.D2698N		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGTAATTGCAGACAGGTGCGT	0.363													11	16					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38877379	38877379	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38877379G>A	uc003ooe.1	+	63	9548	c.8948G>A	c.(8947-8949)AGG>AAG	p.R2983K	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CGCTGGCCAAGGGAGGCTCTG	0.448													11	117					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38877381	38877381	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38877381G>A	uc003ooe.1	+	63	9550	c.8950G>A	c.(8950-8952)GAG>AAG	p.E2984K	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTGGCCAAGGGAGGCTCTGAT	0.448													35	93					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38877410	38877410	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38877410C>T	uc003ooe.1	+	63	9579	c.8979C>T	c.(8977-8979)TTC>TTT	p.F2993F	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCTCCTACTTCCTTTCAGACT	0.448													28	81					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38885838	38885838	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38885838G>A	uc003ooe.1	+	68	10395	c.9795G>A	c.(9793-9795)GGG>GGA	p.G3265G	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAGTCTGTGGGAATGTGGCTG	0.388													26	66					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38897326	38897326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38897326G>A	uc003ooe.1	+	73	11107	c.10507G>A	c.(10507-10509)GAG>AAG	p.E3503K	DNAH8_uc003oog.1_5'UTR|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CACACACTTGGAGGACAGCCT	0.408													68	152					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38903382	38903382	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38903382G>A	uc003ooe.1	+	75	11421	c.10821G>A	c.(10819-10821)GAG>GAA	p.E3607E	DNAH8_uc003oog.1_Silent_p.E56E|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAGAGGCTGAGAGGGTTAAAC	0.313													93	200					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38917285	38917285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38917285G>A	uc003ooe.1	+	79	12136	c.11536G>A	c.(11536-11538)GAA>AAA	p.E3846K	DNAH8_uc003oog.1_Missense_Mutation_p.E295K|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TCCAGAGGAGGAAATTATCCC	0.388													32	130					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38917344	38917344	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38917344C>T	uc003ooe.1	+	79	12195	c.11595C>T	c.(11593-11595)ATC>ATT	p.I3865I	DNAH8_uc003oog.1_Silent_p.I314I|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTTTACTTATCAGGTGAGAAC	0.353													17	86					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38939413	38939413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38939413G>A	uc003ooe.1	+	81	12446	c.11846G>A	c.(11845-11847)CGA>CAA	p.R3949Q	DNAH8_uc003oog.1_Missense_Mutation_p.R398Q	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GTACATGCTCGAAAGCTGATT	0.413													22	94					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38950158	38950158	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38950158C>T	uc003ooe.1	+	84	12820	c.12220C>T	c.(12220-12222)CCC>TCC	p.P4074S	DNAH8_uc003oog.1_Missense_Mutation_p.P523S	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATGGAATATTCCCTACGAATT	0.353													15	207					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38952011	38952011	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38952011G>A	uc003ooe.1	+	85	12930	c.12330G>A	c.(12328-12330)ATG>ATA	p.M4110I	DNAH8_uc003oog.1_Missense_Mutation_p.M559I	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTCGGTACATGATCGGAGAAG	0.343													16	85					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38957887	38957887	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38957887C>T	uc003ooe.1	+	86	13102	c.12502C>T	c.(12502-12504)CAG>TAG	p.Q4168*		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGAATACATCCAGTCACTGCC	0.408													63	182					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38997934	38997934	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:38997934G>A	uc003ooe.1	+	91	13839	c.13239G>A	c.(13237-13239)CGG>CGA	p.R4413R		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGGACAGACGGAATGGGAAGC	0.488											OREG0017409	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	87					0	0	1	0	0
KCNK5	8645	broad.mit.edu	37	6	39158831	39158831	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39158831C>T	uc003oon.2	-	5	1699	c.1335G>A	c.(1333-1335)GGG>GGA	p.G445G		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	445					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GGCTCTCCTCCCCTGCCAAGT	0.627													10	24					0	0	1	0	0
KCNK5	8645	broad.mit.edu	37	6	39159080	39159080	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39159080C>T	uc003oon.2	-	5	1450	c.1086G>A	c.(1084-1086)CTG>CTA	p.L362L		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	362					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						CTTTGCTCCTCAGTGTCTGTG	0.632													13	38					0	0	1	0	0
KCNK5	8645	broad.mit.edu	37	6	39159259	39159259	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39159259C>T	uc003oon.2	-	5	1271	c.907G>A	c.(907-909)GAC>AAC	p.D303N		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	303	Cytoplasmic (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						TTGATGAGGTCGTTGTAGGTC	0.627													60	190					0	0	1	0	0
KCNK5	8645	broad.mit.edu	37	6	39159484	39159484	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39159484C>T	uc003oon.2	-	5	1046	c.682G>A	c.(682-684)GAG>AAG	p.E228K		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	228					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						ATCCAGAGCTCCACGAAGTAG	0.577													98	57					0	0	1	0	0
KCNK17	89822	broad.mit.edu	37	6	39267378	39267378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39267378G>A	uc003ooo.2	-	5	964	c.824C>T	c.(823-825)TCC>TTC	p.S275F	KCNK17_uc003oop.2_3'UTR	NM_031460	NP_113648	Q96T54	KCNKH_HUMAN	potassium channel, subfamily K, member 17	275	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2						GTGGCAGCAGGAACATACCCT	0.562													27	58					0	0	1	0	0
KIF6	221458	broad.mit.edu	37	6	39325115	39325115	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39325115C>T	uc003oot.2	-	19	2213	c.2118G>A	c.(2116-2118)ACG>ACA	p.T706T	KIF6_uc003oos.2_Silent_p.T157T|KIF6_uc010jwz.1_Silent_p.T81T|KIF6_uc010jxa.1_Silent_p.T497T|KIF6_uc011dua.1_Silent_p.T689T|KIF6_uc010jxb.1_Silent_p.T650T	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	706					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						GAAATGGCTTCGTGTGATCGA	0.458													38	91					0	0	1	0	0
KIF6	221458	broad.mit.edu	37	6	39563886	39563886	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39563886C>T	uc003oot.2	-	7	885	c.790G>A	c.(790-792)GGC>AGC	p.G264S	KIF6_uc010jxa.1_Missense_Mutation_p.G55S|KIF6_uc011dua.1_Missense_Mutation_p.G264S|KIF6_uc010jxb.1_Missense_Mutation_p.G264S	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	264	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						AGAAGATGGCCCCCTACTCCA	0.423													17	77					0	0	1	0	0
MOCS1	4337	broad.mit.edu	37	6	39883840	39883840	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39883840G>A	uc003opb.2	-	3	693	c.555C>T	c.(553-555)GCC>GCT	p.A185A	MOCS1_uc003opa.2_Silent_p.A185A|MOCS1_uc003opc.2_Silent_p.A185A|MOCS1_uc003opd.2_Silent_p.A185A|MOCS1_uc003ope.2_Silent_p.A98A	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	185	Molybdenum cofactor biosynthesis protein A.				Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					ACTCAAACTTGGCAGGCACCA	0.597													4	15					0	0	1	0	0
MOCS1	4337	broad.mit.edu	37	6	39895211	39895211	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39895211G>A	uc003opb.2	-	1	245	c.107C>T	c.(106-108)CCT>CTT	p.P36L	MOCS1_uc003opa.2_Missense_Mutation_p.P36L|MOCS1_uc003opc.2_Missense_Mutation_p.P36L|MOCS1_uc003opd.2_Intron|MOCS1_uc003ope.2_Intron	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	32	Molybdenum cofactor biosynthesis protein A.				Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					GGACAGACCAGGGAGGAAGCA	0.652													5	14					0	0	1	0	0
MOCS1	4337	broad.mit.edu	37	6	39895225	39895225	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39895225G>A	uc003opb.2	-	1	231	c.93C>T	c.(91-93)GGC>GGT	p.G31G	MOCS1_uc003opa.2_Silent_p.G31G|MOCS1_uc003opc.2_Silent_p.G31G|MOCS1_uc003opd.2_Intron|MOCS1_uc003ope.2_Intron	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					GGAAGCATGGGCCCCTGCTAC	0.637													9	11					0	0	1	0	0
MOCS1	4337	broad.mit.edu	37	6	39895244	39895244	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:39895244G>A	uc003opb.2	-	1	212	c.74C>T	c.(73-75)TCC>TTC	p.S25F	MOCS1_uc003opa.2_Missense_Mutation_p.S25F|MOCS1_uc003opc.2_Missense_Mutation_p.S25F|MOCS1_uc003opd.2_Intron|MOCS1_uc003ope.2_Intron	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					ACCGGGCTGGGAAGAGGCACA	0.632													9	13					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40399472	40399472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:40399472C>T	uc003oph.1	-	2	1846	c.1381G>A	c.(1381-1383)GAT>AAT	p.D461N		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	461	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGTACCTCATCGTCAGAGCAG	0.592													21	50					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40400463	40400463	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:40400463G>A	uc003oph.1	-	2	855	c.390C>T	c.(388-390)ATC>ATT	p.I130I		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	130	LRR 4.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					TGTTGTTCACGATAAGGTGCT	0.592													12	44					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40400505	40400505	+	Silent	SNP	C	T	T	rs141680440	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:40400505C>T	uc003oph.1	-	2	813	c.348G>A	c.(346-348)GGG>GGA	p.G116G		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	116	LRR 3.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GGGTGTCCTCCCCAAGGCTTG	0.587													18	31					0	0	1	0	0
APOBEC2	10930	broad.mit.edu	37	6	41029269	41029269	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41029269G>A	uc003opl.2	+	2	481	c.334G>A	c.(334-336)GAC>AAC	p.D112N	UNC5CL_uc010jxe.1_Intron|APOBEC2_uc010jxf.2_RNA	NM_006789	NP_006780	Q9Y235	ABEC2_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	112					DNA demethylation|mRNA processing		cytidine deaminase activity|RNA binding|zinc ion binding				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					GCCAGCCTTCGACCCAGCCCT	0.572													60	166					0	0	1	0	0
TREML1	340205	broad.mit.edu	37	6	41117391	41117391	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41117391G>A	uc011duc.1	-	6	931	c.887C>T	c.(886-888)TCG>TTG	p.S296L	TREML1_uc003opx.2_3'UTR|TREML1_uc011dud.1_Missense_Mutation_p.S185L	NM_178174	NP_835468	Q86YW5	TRML1_HUMAN	triggering receptor expressed on myeloid	296	Cytoplasmic (Potential).				calcium-mediated signaling|innate immune response|platelet activation	cell surface|integral to membrane|plasma membrane|platelet alpha granule	protein binding|receptor activity			breast(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					TGGCCCACACGAGGTCCCTCC	0.547													29	77					0	0	1	0	0
TREML1	340205	broad.mit.edu	37	6	41121769	41121769	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41121769G>A	uc011duc.1	-	2	147	c.103C>T	c.(103-105)CTG>TTG	p.L35L	TREML1_uc003opx.2_Silent_p.L35L|TREML1_uc011dud.1_Intron	NM_178174	NP_835468	Q86YW5	TRML1_HUMAN	triggering receptor expressed on myeloid	35	Ig-like V-type.|Extracellular (Potential).				calcium-mediated signaling|innate immune response|platelet activation	cell surface|integral to membrane|plasma membrane|platelet alpha granule	protein binding|receptor activity			breast(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					CACTGCACCAGAATGGAGCTT	0.617													11	31					0	0	1	0	0
TREML1	340205	broad.mit.edu	37	6	41121799	41121799	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41121799C>T	uc011duc.1	-	2	117	c.73G>A	c.(73-75)GTG>ATG	p.V25M	TREML1_uc003opx.2_Missense_Mutation_p.V25M|TREML1_uc011dud.1_Intron	NM_178174	NP_835468	Q86YW5	TRML1_HUMAN	triggering receptor expressed on myeloid	25	Ig-like V-type.|Extracellular (Potential).				calcium-mediated signaling|innate immune response|platelet activation	cell surface|integral to membrane|plasma membrane|platelet alpha granule	protein binding|receptor activity			breast(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					GCCTGCAGCACCTCAGGGAGG	0.612													11	38					0	0	1	0	0
TREM2	54209	broad.mit.edu	37	6	41126689	41126689	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41126689C>T	uc003opy.2	-	4	700	c.598G>A	c.(598-600)GGA>AGA	p.G200R	TREM2_uc003opz.2_Nonsense_Mutation_p.W243*|TREM2_uc010jxl.1_Intron	NM_018965	NP_061838	Q9NZC2	TREM2_HUMAN	triggering receptor expressed on myeloid cells 2	200	Cytoplasmic (Potential).				axon guidance|humoral immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					GGCTTCTGTCCATGCCAGGCT	0.582													21	56					0	0	1	0	0
TREML2	79865	broad.mit.edu	37	6	41165887	41165887	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41165887G>A	uc010jxm.1	-	2	515	c.336C>T	c.(334-336)ATC>ATT	p.I112I		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	112	Ig-like V-type.|Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGGGGTACAGGATCCCAGAGG	0.622													9	39					0	0	1	0	0
TREML2	79865	broad.mit.edu	37	6	41166002	41166002	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41166002C>T	uc010jxm.1	-	2	400	c.221G>A	c.(220-222)GGG>GAG	p.G74E		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	74	Ig-like V-type.|Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					GTAGCGGGGCCCTTTCACCCA	0.577													48	128					0	0	1	0	0
FOXP4	116113	broad.mit.edu	37	6	41552569	41552569	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41552569C>T	uc003oql.2	+	4	821	c.363C>T	c.(361-363)ATC>ATT	p.I121I	FOXP4_uc003oqm.2_Silent_p.I121I|FOXP4_uc003oqn.2_Silent_p.I121I	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	121	Gln-rich.				embryonic foregut morphogenesis|heart development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					TGCAGCAGATCCTGTCGCCCC	0.662													9	22					0	0	1	0	0
FOXP4	116113	broad.mit.edu	37	6	41558063	41558063	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41558063C>T	uc003oql.2	+	12	1870	c.1412C>T	c.(1411-1413)ACC>ATC	p.T471I	FOXP4_uc003oqm.2_Missense_Mutation_p.T469I|FOXP4_uc003oqn.2_Missense_Mutation_p.T458I	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	471	Fork-head.				embryonic foregut morphogenesis|heart development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CCCCCCTTCACCTACGCCTCC	0.647													42	120					0	0	1	0	0
MDFI	4188	broad.mit.edu	37	6	41617481	41617481	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41617481G>A	uc003oqp.3	+	5	713	c.384G>A	c.(382-384)CGG>CGA	p.R128R	MDFI_uc003oqq.3_Silent_p.R128R|MDFI_uc010jxn.2_Silent_p.R128R	NM_005586	NP_005577	Q99750	MDFI_HUMAN	MyoD family inhibitor	128					cytoplasmic sequestering of transcription factor|dorsal/ventral axis specification|negative regulation of DNA binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of Wnt receptor signaling pathway	cytoplasm|nucleus					0	Ovarian(28;0.0327)|Colorectal(47;0.121)		Colorectal(64;0.0123)|COAD - Colon adenocarcinoma(64;0.0264)|KIRC - Kidney renal clear cell carcinoma(1;0.138)			AGGCCCACCGGAAGTTGCAGA	0.647													68	141					0	0	1	0	0
PGC	5225	broad.mit.edu	37	6	41704679	41704679	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41704679G>A	uc003ora.1	-	9	1127	c.1078C>T	c.(1078-1080)CTG>TTG	p.L360L	TFEB_uc003oqs.1_5'Flank|TFEB_uc003oqt.1_5'Flank|TFEB_uc003oqu.1_5'Flank|TFEB_uc010jxq.1_5'Flank	NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	360					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			AGGATCCACAGGGGCTGGCCG	0.537													20	57					0	0	1	0	0
PGC	5225	broad.mit.edu	37	6	41710071	41710071	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41710071C>T	uc003ora.1	-	5	653	c.604G>A	c.(604-606)GAG>AAG	p.E202K		NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	202					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			AGGGCGCCCTCCTGCACCATG	0.642													33	70					0	0	1	0	0
USP49	25862	broad.mit.edu	37	6	41774051	41774051	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41774051G>A	uc003ori.2	-	4	893	c.671C>T	c.(670-672)TCG>TTG	p.S224L		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	224					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			ggcggggcgcgaggcagccgg	0.557													16	16					0	0	1	0	0
USP49	25862	broad.mit.edu	37	6	41774231	41774231	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:41774231C>T	uc003ori.2	-	4	713	c.491G>A	c.(490-492)CGG>CAG	p.R164Q		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	164					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CGCCTGGCCCCGGGAGCTCTT	0.721													6	31					0	0	1	0	0
TAF8	129685	broad.mit.edu	37	6	42034064	42034064	+	Silent	SNP	C	T	T	rs80150955	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42034064C>T	uc003ors.2	+	6	533	c.504C>T	c.(502-504)CCC>CCT	p.P168P	TAF8_uc003ort.2_Silent_p.P168P|TAF8_uc003oru.1_Silent_p.P168P|TAF8_uc003orv.1_Silent_p.P168P|TAF8_uc011dun.1_Silent_p.P105P	NM_138572	NP_612639	Q7Z7C8	TAF8_HUMAN	TBP-associated factor 8	168					cell differentiation|maintenance of protein location in nucleus|positive regulation of transcription, DNA-dependent|regulation of fat cell differentiation|transcription, DNA-dependent	perinuclear region of cytoplasm|transcription factor TFIID complex	DNA binding|protein binding			ovary(1)	1	Colorectal(47;0.196)		STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00179)			ACCGTGAGCCCGTGTCAGACT	0.577													15	32					0	0	1	0	0
MRPS10	55173	broad.mit.edu	37	6	42179636	42179636	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42179636G>A	uc003osa.3	-	4	252	c.206C>T	c.(205-207)CCA>CTA	p.P69L	MRPS10_uc011dup.1_Missense_Mutation_p.P28L	NM_018141	NP_060611	P82664	RT10_HUMAN	mitochondrial ribosomal protein S10	69					translation	actin cytoskeleton|mitochondrion|ribosome	structural constituent of ribosome				0	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00528)			TAATATGTCTGGTTCATCAGA	0.343													6	87					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42196398	42196398	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42196398G>A	uc003osd.2	-	18	3851	c.3288C>T	c.(3286-3288)TTC>TTT	p.F1096F	TRERF1_uc011duq.1_Silent_p.F1013F|TRERF1_uc003osb.2_Silent_p.F864F|TRERF1_uc003osc.2_Silent_p.F852F|TRERF1_uc003ose.2_Silent_p.F1116F	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	1096	Interacts with CREBBP.|C2H2-type 3.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TTTTGATCTTGAAGAAGACTC	0.468													159	344					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42204020	42204020	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42204020G>A	uc003osd.2	-	16	3552	c.2989C>T	c.(2989-2991)CCC>TCC	p.P997S	TRERF1_uc011duq.1_Missense_Mutation_p.P914S|TRERF1_uc003osb.2_Missense_Mutation_p.P753S|TRERF1_uc003osc.2_Missense_Mutation_p.P753S|TRERF1_uc003ose.2_Missense_Mutation_p.P1017S	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	997	Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CCCTCCGTGGGAGCCAGGACG	0.577													6	21					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42225911	42225911	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42225911G>A	uc003osd.2	-	10	2861	c.2298C>T	c.(2296-2298)GTC>GTT	p.V766V	TRERF1_uc011duq.1_Silent_p.V683V|TRERF1_uc003osb.2_Silent_p.V522V|TRERF1_uc003osc.2_Silent_p.V522V|TRERF1_uc003ose.2_Silent_p.V786V	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	766	Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GCCCTGGGGTGACCGTCACGT	0.433													15	35					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42227377	42227377	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42227377G>A	uc003osd.2	-	9	2532	c.1969C>T	c.(1969-1971)CGG>TGG	p.R657W	TRERF1_uc011duq.1_Missense_Mutation_p.R574W|TRERF1_uc003osb.2_Missense_Mutation_p.R413W|TRERF1_uc003osc.2_Missense_Mutation_p.R413W|TRERF1_uc003ose.2_Missense_Mutation_p.R677W	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	657	Pro-rich.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GGTTCCGGCCGGTGCCGGAAC	0.637													12	87					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42231188	42231188	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42231188G>A	uc003osd.2	-	8	2317	c.1754C>T	c.(1753-1755)CCC>CTC	p.P585L	TRERF1_uc011duq.1_Intron|TRERF1_uc003osb.2_Intron|TRERF1_uc003osc.2_Intron|TRERF1_uc003ose.2_Missense_Mutation_p.P585L	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	585	Pro-rich.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GACAGACACGGGCATGACCAT	0.433													21	70					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42236191	42236191	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42236191G>A	uc003osd.2	-	5	1701	c.1138C>T	c.(1138-1140)CAG>TAG	p.Q380*	TRERF1_uc011duq.1_Nonsense_Mutation_p.Q380*|TRERF1_uc003osb.2_Nonsense_Mutation_p.Q219*|TRERF1_uc003osc.2_Nonsense_Mutation_p.Q219*|TRERF1_uc003ose.2_Nonsense_Mutation_p.Q380*	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	380	Gln-rich.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TGGGGCTCCTGGTAGTAGTAC	0.597													28	105					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42237142	42237142	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42237142C>T	uc003osd.2	-	5	750	c.187G>A	c.(187-189)GAT>AAT	p.D63N	TRERF1_uc011duq.1_Missense_Mutation_p.D63N|TRERF1_uc003osb.2_Intron|TRERF1_uc003osc.2_Intron|TRERF1_uc003ose.2_Missense_Mutation_p.D63N	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	63					cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CCCAGACCATCCCGTGTATCT	0.587													28	108					0	0	1	0	0
KIAA0240	23506	broad.mit.edu	37	6	42797233	42797233	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42797233C>T	uc003osn.1	+	6	1313	c.1162C>T	c.(1162-1164)CAT>TAT	p.H388Y	KIAA0240_uc003osm.1_Missense_Mutation_p.H388Y|KIAA0240_uc011duw.1_Missense_Mutation_p.H388Y|KIAA0240_uc003oso.1_Missense_Mutation_p.H388Y|KIAA0240_uc003osp.1_Missense_Mutation_p.H388Y	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	388										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			TATTGTTATTCATTCCCCCAT	0.488													63	287					0	0	1	0	0
KIAA0240	23506	broad.mit.edu	37	6	42828080	42828080	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42828080C>T	uc003osn.1	+	11	2486	c.2335C>T	c.(2335-2337)CTA>TTA	p.L779L	KIAA0240_uc011duw.1_Silent_p.L779L|KIAA0240_uc003osp.1_Silent_p.L779L	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	779										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			ATGCCTGCTCCTAGAAGATGC	0.383													52	110					0	0	1	0	0
KIAA0240	23506	broad.mit.edu	37	6	42833145	42833145	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:42833145C>T	uc003osn.1	+	13	3352	c.3201C>T	c.(3199-3201)TCC>TCT	p.S1067S	KIAA0240_uc011duw.1_Silent_p.S1067S|KIAA0240_uc003osp.1_Silent_p.S1067S	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	1067										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			AAACTGACTCCATTTTAGAAG	0.512													45	115					0	0	1	0	0
KLC4	89953	broad.mit.edu	37	6	43034198	43034198	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43034198G>A	uc003otv.1	+	5	803	c.726G>A	c.(724-726)GAG>GAA	p.E242E	KLC4_uc003otr.1_RNA|KLC4_uc011dvd.1_Silent_p.E165E|KLC4_uc003otu.2_Silent_p.E242E|KLC4_uc003otw.1_Silent_p.E260E|KLC4_uc003otx.1_Silent_p.E242E|KLC4_uc003oty.1_Silent_p.E242E|KLC4_uc003otz.1_Silent_p.E242E	NM_201521	NP_958929	Q9NSK0	KLC4_HUMAN	kinesin-like 8 isoform a	242	TPR 2.					cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			skin(3)|ovary(1)	4			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			AGGACCTGGAGCGCACATCAG	0.592													18	70					0	0	1	0	0
KLC4	89953	broad.mit.edu	37	6	43039079	43039079	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43039079C>T	uc003otv.1	+	9	1299	c.1222C>T	c.(1222-1224)CGT>TGT	p.R408C	KLC4_uc003otr.1_RNA|KLC4_uc011dvd.1_Missense_Mutation_p.R331C|KLC4_uc003otw.1_Missense_Mutation_p.R426C|KLC4_uc003otx.1_Missense_Mutation_p.R408C|KLC4_uc003oty.1_Missense_Mutation_p.R408C|KLC4_uc003otz.1_Missense_Mutation_p.R408C	NM_201521	NP_958929	Q9NSK0	KLC4_HUMAN	kinesin-like 8 isoform a	408	TPR 6.					cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			skin(3)|ovary(1)	4			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			GATCCTGACCCGTGCCCATGT	0.512													16	43					0	0	1	0	0
KLC4	89953	broad.mit.edu	37	6	43039885	43039885	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43039885C>T	uc003otv.1	+	12	1457	c.1380C>T	c.(1378-1380)AGC>AGT	p.S460S	KLC4_uc003otr.1_RNA|KLC4_uc011dvd.1_Silent_p.S383S|KLC4_uc003otw.1_Silent_p.S478S|KLC4_uc003otx.1_Silent_p.S460S|KLC4_uc003oty.1_Silent_p.S460S|KLC4_uc003otz.1_Silent_p.S460S	NM_201521	NP_958929	Q9NSK0	KLC4_HUMAN	kinesin-like 8 isoform a	460						cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			skin(3)|ovary(1)	4			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			CTCACCACAGCCCCACAGTGA	0.483													9	124					0	0	1	0	0
PTK7	5754	broad.mit.edu	37	6	43099815	43099815	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43099815C>T	uc003oub.1	+	6	1072	c.874C>T	c.(874-876)CGG>TGG	p.R292W	PTK7_uc003ouc.1_Missense_Mutation_p.R292W|PTK7_uc003oud.1_Missense_Mutation_p.R292W|PTK7_uc003oue.1_Missense_Mutation_p.R292W|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.R300W|PTK7_uc010jyj.1_5'Flank|PTK7_uc003oua.2_Missense_Mutation_p.R292W	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	292	Ig-like C2-type 3.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GACCCAGGTCCGGCCACGCAA	0.617													26	56					0	0	1	0	0
PTK7	5754	broad.mit.edu	37	6	43106982	43106982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43106982G>A	uc003oub.1	+	9	1669	c.1471G>A	c.(1471-1473)GAG>AAG	p.E491K	PTK7_uc003ouc.1_Missense_Mutation_p.E491K|PTK7_uc003oud.1_Missense_Mutation_p.E491K|PTK7_uc003oue.1_Intron|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.E499K|PTK7_uc010jyj.1_Intron	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	491	Ig-like C2-type 5.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			CGGCAGCATCGAGGCGCAAGC	0.607													20	34					0	0	1	0	0
PTK7	5754	broad.mit.edu	37	6	43109528	43109528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43109528C>T	uc003oub.1	+	11	1939	c.1741C>T	c.(1741-1743)CGT>TGT	p.R581C	PTK7_uc003ouc.1_Missense_Mutation_p.R581C|PTK7_uc003oud.1_Missense_Mutation_p.R541C|PTK7_uc003oue.1_Missense_Mutation_p.R451C|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.R589C|PTK7_uc010jyj.1_Intron	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	581	Ig-like C2-type 6.|Ig-like C2-type 7.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GGGCCAGATTCGTGCCCATGT	0.657													38	111					0	0	1	0	0
PTK7	5754	broad.mit.edu	37	6	43109933	43109933	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43109933C>T	uc003oub.1	+	13	2141	c.1943C>T	c.(1942-1944)TCC>TTC	p.S648F	PTK7_uc003ouc.1_Intron|PTK7_uc003oud.1_Missense_Mutation_p.S608F|PTK7_uc003oue.1_Missense_Mutation_p.S518F|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.S656F|PTK7_uc010jyj.1_Intron	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	648	Ig-like C2-type 7.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			CAGAATGGCTCCCTGGTGATC	0.627													28	69					0	0	1	0	0
CUL9	23113	broad.mit.edu	37	6	43153697	43153697	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43153697C>T	uc003ouk.2	+	4	830	c.755C>T	c.(754-756)CCA>CTA	p.P252L	CUL9_uc003ouj.1_Missense_Mutation_p.P252L|CUL9_uc003oul.2_Missense_Mutation_p.P252L|CUL9_uc010jyk.2_5'UTR|CUL9_uc003oum.1_5'Flank	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	252					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						TTACAGATCCCAGGAAAGCTG	0.507													19	48					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43214429	43214429	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43214429G>A	uc003ouq.1	+	2	310	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	11						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			CCTTAAGGACGAAACCAACAT	0.667													12	40					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43214476	43214476	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43214476C>T	uc003ouq.1	+	2	357	c.78C>T	c.(76-78)GCC>GCT	p.A26A		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	26						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			TCCTGCCGGCCAACTACGTGG	0.642													13	34					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43226909	43226909	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43226909C>T	uc003ouq.1	+	11	1429	c.1150C>T	c.(1150-1152)CCC>TCC	p.P384S		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	384						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GGGGCTGGGCCCCAGTCCCCA	0.627													20	75					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43230915	43230915	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43230915G>A	uc003ouq.1	+	13	2092	c.1813G>A	c.(1813-1815)GAG>AAG	p.E605K	TTBK1_uc011dvg.1_Missense_Mutation_p.E128K	NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	605						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GGCGCTGGCGGAGGAGGACCT	0.756													3	7					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43250649	43250649	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43250649C>T	uc003ouq.1	+	14	2450	c.2171C>T	c.(2170-2172)CCT>CTT	p.P724L		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	724	Potential.					cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			CCACTGGCTCCTGTTCAGCCT	0.393													28	40					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43250678	43250678	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43250678G>A	uc003ouq.1	+	14	2479	c.2200G>A	c.(2200-2202)GAA>AAA	p.E734K		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	734	Glu-rich.|Potential.					cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			TGGGAaggaggaagaggagga	0.299													22	31					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43251399	43251400	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43251399_43251400GG>AA	uc003ouq.1	+	14	3200_3201	c.2921_2922GG>AA	c.(2920-2922)GGG>GAA	p.G974E		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	974						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GTGGAGGAGGGGGCCCGAGCGC	0.688													33	44					0	0	1	0	0
SLC22A7	10864	broad.mit.edu	37	6	43268903	43268903	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43268903G>A	uc003out.2	+	6	957	c.858G>A	c.(856-858)CTG>CTA	p.L286L	SLC22A7_uc010jyl.1_Silent_p.L287L|SLC22A7_uc003ous.2_Silent_p.L284L	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	286						basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			GCTGGCTTCTGACCCAAGGCC	0.532													35	69					0	0	1	0	0
SLC22A7	10864	broad.mit.edu	37	6	43269342	43269343	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43269342_43269343GG>AA	uc003out.2	+	7	1072_1073	c.973_974GG>AA	c.(973-975)GGG>AAG	p.G325K	SLC22A7_uc010jyl.1_Missense_Mutation_p.G326K|SLC22A7_uc003ous.2_Missense_Mutation_p.G323K	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	325						basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			AGTGGCCGCCGGGGAACGGGTG	0.589													19	35					0	0	1	0	0
ZNF318	24149	broad.mit.edu	37	6	43322566	43322566	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43322566G>A	uc003oux.2	-	4	2584	c.2506C>T	c.(2506-2508)CGT>TGT	p.R836C	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	836					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			GGGATCACACGAAGATTGGGA	0.527													11	101					0	0	1	0	0
ZNF318	24149	broad.mit.edu	37	6	43325361	43325361	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43325361G>A	uc003oux.2	-	3	769	c.691C>T	c.(691-693)CTG>TTG	p.L231L	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	231					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			GATCGATGCAGGAAAGTTTCT	0.478													28	92					0	0	1	0	0
ZNF318	24149	broad.mit.edu	37	6	43325417	43325417	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43325417G>A	uc003oux.2	-	3	713	c.635C>T	c.(634-636)CCT>CTT	p.P212L	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	212					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			GGGACTGAGAGGCCCTTCCTC	0.478													35	101					0	0	1	0	0
ABCC10	89845	broad.mit.edu	37	6	43400228	43400228	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43400228C>T	uc003ouy.1	+	3	725	c.510C>T	c.(508-510)GCC>GCT	p.A170A	ABCC10_uc003ouz.1_Silent_p.A127A	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	170						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			GGCCCATGGCCCGCCTATGCT	0.652													42	80					0	0	1	0	0
ABCC10	89845	broad.mit.edu	37	6	43400359	43400359	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43400359C>T	uc003ouy.1	+	3	856	c.641C>T	c.(640-642)GCT>GTT	p.A214V	ABCC10_uc003ouz.1_Missense_Mutation_p.A171V	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	214						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CCTGAGGTGGCTGAAGATGGG	0.637													41	100					0	0	1	0	0
ABCC10	89845	broad.mit.edu	37	6	43413570	43413570	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43413570C>T	uc003ouy.1	+	15	3479	c.3264C>T	c.(3262-3264)TCC>TCT	p.S1088S	ABCC10_uc003ouz.1_Silent_p.S1060S|ABCC10_uc010jyo.1_Silent_p.S194S	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	1088	ABC transmembrane type-1 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			ACAGGGCCTCCTCACGGGAGC	0.667													22	59					0	0	1	0	0
ABCC10	89845	broad.mit.edu	37	6	43416923	43416923	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43416923C>T	uc003ouy.1	+	20	4399	c.4184C>T	c.(4183-4185)GCT>GTT	p.A1395V	ABCC10_uc003ouz.1_Missense_Mutation_p.A1367V|ABCC10_uc010jyo.1_Missense_Mutation_p.A501V	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	1395	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			TTGGCCAGGGCTCTCCTCACA	0.592													8	63					0	0	1	0	0
YIPF3	25844	broad.mit.edu	37	6	43481164	43481164	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43481164G>A	uc003ovl.1	-	5	624	c.467C>T	c.(466-468)CCT>CTT	p.P156L	C6orf154_uc003ovk.1_5'Flank|YIPF3_uc011dvk.1_Missense_Mutation_p.P121L|YIPF3_uc010jyr.1_Missense_Mutation_p.P162L|YIPF3_uc010jys.1_5'UTR|YIPF3_uc003ovm.1_Missense_Mutation_p.P30L|YIPF3_uc010jyt.1_Missense_Mutation_p.P105L	NM_015388	NP_056203	Q9GZM5	YIPF3_HUMAN	natural killer cell-specific antigen KLIP1	156	Helical; (Potential).				cell differentiation	integral to membrane|plasma membrane|transport vesicle					0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00736)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			CAGCATGAGAGGTCCATAGAG	0.478													19	33					0	0	1	0	0
POLR1C	9533	broad.mit.edu	37	6	43484866	43484866	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43484866G>A	uc003ovn.2	+	1	76	c.19G>A	c.(19-21)GTG>ATG	p.V7M	YIPF3_uc003ovl.1_5'Flank|YIPF3_uc011dvk.1_5'Flank|YIPF3_uc010jyr.1_5'Flank|YIPF3_uc010jys.1_5'Flank|YIPF3_uc003ovm.1_5'Flank|YIPF3_uc010jyt.1_5'Flank|POLR1C_uc003ovo.1_Missense_Mutation_p.V7M	NM_203290	NP_976035	O15160	RPAC1_HUMAN	RNA polymerase I subunit isoform 1	7					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein dimerization activity				0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|all cancers(41;0.00511)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			TTCTCAGGCGGTGGAGGAAAT	0.612													30	98					0	0	1	0	0
POLH	5429	broad.mit.edu	37	6	43550847	43550847	+	Missense_Mutation	SNP	C	T	T	rs113074920		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:43550847C>T	uc003ovq.3	+	3	545	c.241C>T	c.(241-243)CGT>TGT	p.R81C	POLH_uc010jyu.2_Silent_p.F29F|POLH_uc011dvl.1_RNA	NM_006502	NP_006493	Q9Y253	POLH_HUMAN	DNA-directed DNA polymerase eta	81	UmuC.				DNA replication|DNA synthesis involved in DNA repair|regulation of DNA repair|response to UV-C	cytoplasm|nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			breast(2)	2	all_cancers(18;1.89e-05)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000753)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			GGCACAAGTTCGTGAGTCCCG	0.413								DNA_polymerases_(catalytic_subunits)	Xeroderma_Pigmentosum				17	46					0	0	1	0	0
MRPL14	64928	broad.mit.edu	37	6	44081883	44081883	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44081883G>A	uc003owp.2	-	3	264	c.135C>T	c.(133-135)GCC>GCT	p.A45A		NM_032111	NP_115487	Q6P1L8	RM14_HUMAN	mitochondrial ribosomal protein L14 precursor	45					translation	mitochondrion|ribosome	structural constituent of ribosome			ovary(1)	1	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0181)			TGTTCCCCAGGGCACTGTTGT	0.542													29	301					0	0	1	0	0
TMEM63B	55362	broad.mit.edu	37	6	44102463	44102463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44102463G>A	uc003owr.2	+	2	206	c.142G>A	c.(142-144)GAC>AAC	p.D48N	TMEM63B_uc003owq.1_Missense_Mutation_p.D48N|TMEM63B_uc010jyy.1_5'UTR|TMEM63B_uc003ows.2_5'Flank	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	48	Helical; (Potential).					integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			GCTGGCTCTCGACTTCATGTG	0.602													27	65					0	0	1	0	0
TMEM63B	55362	broad.mit.edu	37	6	44102468	44102468	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44102468C>T	uc003owr.2	+	2	211	c.147C>T	c.(145-147)TTC>TTT	p.F49F	TMEM63B_uc003owq.1_Silent_p.F49F|TMEM63B_uc010jyy.1_5'UTR|TMEM63B_uc003ows.2_5'Flank	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	49	Helical; (Potential).					integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			CTCTCGACTTCATGTGCTTCC	0.607													27	66					0	0	1	0	0
TMEM63B	55362	broad.mit.edu	37	6	44114596	44114596	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44114596C>T	uc003owr.2	+	11	859	c.795C>T	c.(793-795)CCC>CCT	p.P265P	TMEM63B_uc003owq.1_Silent_p.P265P|TMEM63B_uc003ows.2_Silent_p.P168P|TMEM63B_uc010jyz.2_RNA	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	265						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			AAGCCTACCCCAACTGCACAG	0.562													33	70					0	0	1	0	0
TMEM63B	55362	broad.mit.edu	37	6	44118029	44118029	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44118029C>T	uc003owr.2	+	17	1653	c.1589C>T	c.(1588-1590)CCC>CTC	p.P530L	TMEM63B_uc003ows.2_Missense_Mutation_p.P433L|TMEM63B_uc010jyz.2_RNA	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	530	Helical; (Potential).					integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			CTGCTCCTACCCTCGCTGGGA	0.592													32	68					0	0	1	0	0
CAPN11	11131	broad.mit.edu	37	6	44147827	44147827	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44147827C>T	uc003owt.1	+	14	1605	c.1567C>T	c.(1567-1569)CCC>TCC	p.P523S	CAPN11_uc011dvn.1_Missense_Mutation_p.P177S	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	523	Domain III.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TATCATTATTCCCTCCACCTT	0.552													26	45					0	0	1	0	0
SLC29A1	2030	broad.mit.edu	37	6	44198553	44198553	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44198553C>T	uc003owu.1	+	8	1022	c.693C>T	c.(691-693)TTC>TTT	p.F231F	SLC29A1_uc003owv.1_Silent_p.F231F|SLC29A1_uc003oww.1_Silent_p.F310F|SLC29A1_uc003owx.1_Silent_p.F231F|SLC29A1_uc003owy.1_Silent_p.F231F|SLC29A1_uc003owz.1_Silent_p.F231F	NM_004955	NP_004946	Q99808	S29A1_HUMAN	equilibrative nucleoside transporter 1	231	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|basolateral plasma membrane|integral to plasma membrane|membrane fraction	nucleoside transmembrane transporter activity|protein binding			large_intestine(2)|skin(1)	3	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		Troglitazone(DB00197)	GATAGGAATTCTACCGCTACT	0.547													29	82					0	0	1	0	0
TCTE1	202500	broad.mit.edu	37	6	44250212	44250212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44250212C>T	uc003oxi.2	-	4	1087	c.931G>A	c.(931-933)GAG>AAG	p.E311K	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	311	LRR 1.									ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AAGTCCAGCTCCTCGAGGACT	0.567													8	96					0	0	1	0	0
TCTE1	202500	broad.mit.edu	37	6	44253805	44253805	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44253805C>T	uc003oxi.2	-	3	898	c.742G>A	c.(742-744)GAT>AAT	p.D248N	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	248										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TCCTTGACATCGTACACCAGG	0.592													21	67					0	0	1	0	0
SPATS1	221409	broad.mit.edu	37	6	44310751	44310751	+	Translation_Start_Site	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44310751T>A	uc003oxk.2	+	1	266	c.-81T>A	c.(-83--79)GTTTG>GTATG		SPATS1_uc003oxg.2_Intron|SPATS1_uc010jzb.2_Translation_Start_Site	NM_145026	NP_659463	Q496A3	SPAS1_HUMAN	spermatogenesis associated, serine-rich 1											skin(1)	1	all_lung(25;0.00469)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TGGAATTTGTTTGTTTTGACT	0.488													11	17					0	0	1	0	0
CDC5L	988	broad.mit.edu	37	6	44371764	44371764	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44371764C>T	uc003oxl.2	+	6	1017	c.758C>T	c.(757-759)TCT>TTT	p.S253F		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	253					cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GAGCTAAGATCGTAAGTTGCC	0.398													17	66					0	0	1	0	0
CDC5L	988	broad.mit.edu	37	6	44387268	44387268	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:44387268T>A	uc003oxl.2	+	9	1434	c.1175T>A	c.(1174-1176)TTC>TAC	p.F392Y		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	392	Interaction with PPP1R8.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GAGAGTGACTTCTCAGGTGTA	0.428													36	95					0	0	1	0	0
CLIC5	53405	broad.mit.edu	37	6	45882124	45882124	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:45882124C>T	uc003oxv.3	-	5	1012	c.906G>A	c.(904-906)AAG>AAA	p.K302K	CLIC5_uc003oxu.3_Silent_p.K143K|CLIC5_uc003oxw.2_RNA|CLIC5_uc003oxx.2_Silent_p.K143K	NM_001114086	NP_001107558	Q9NZA1	CLIC5_HUMAN	chloride intracellular channel 5 isoform a	302	GST C-terminal.				female pregnancy	actin cytoskeleton|cell cortex|chloride channel complex|Golgi apparatus|Golgi apparatus|insoluble fraction|microtubule organizing center	protein binding|voltage-gated chloride channel activity			ovary(1)|skin(1)	2						TCTTTAGAGCCTTGGTTAGGC	0.493													12	108					0	0	1	0	0
ENPP4	22875	broad.mit.edu	37	6	46107906	46107906	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46107906G>A	uc003oxy.2	+	2	845	c.586G>A	c.(586-588)GGA>AGA	p.G196R		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	196	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						CCACAAATACGGACCTGAAGA	0.383													43	89					0	0	1	0	0
ENPP5	59084	broad.mit.edu	37	6	46133190	46133190	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46133190G>A	uc003oxz.1	-	3	1148	c.940C>T	c.(940-942)CAA>TAA	p.Q314*	ENPP5_uc003oya.1_Nonsense_Mutation_p.Q314*|ENPP5_uc011dvz.1_Nonsense_Mutation_p.Q220*|ENPP5_uc010jzc.1_Nonsense_Mutation_p.Q314*	NM_021572	NP_067547	Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	314						extracellular region|integral to membrane	hydrolase activity				0						ATGATTGGTTGAATTCGACTG	0.383													69	145					0	0	1	0	0
RCAN2	10231	broad.mit.edu	37	6	46214590	46214590	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46214590G>A	uc003oyb.1	-	3	643	c.328C>T	c.(328-330)CTC>TTC	p.L110F	RCAN2_uc003oyc.1_Missense_Mutation_p.L156F|RCAN2_uc003oyd.1_Missense_Mutation_p.L156F	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	110					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						GGCGAGATGAGAAACTGTTTG	0.522													13	55					0	0	1	0	0
RCAN2	10231	broad.mit.edu	37	6	46216600	46216600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46216600C>T	uc003oyb.1	-	2	436	c.121G>A	c.(121-123)GAC>AAC	p.D41N	RCAN2_uc003oyc.1_Missense_Mutation_p.D87N|RCAN2_uc003oyd.1_Missense_Mutation_p.D87N	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	41					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						GTCACACAGTCATCATAAGTC	0.418													5	61					0	0	1	0	0
TDRD6	221400	broad.mit.edu	37	6	46656397	46656397	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46656397C>T	uc003oyj.2	+	1	532	c.532C>T	c.(532-534)CGC>TGC	p.R178C	TDRD6_uc010jze.2_Missense_Mutation_p.R172C	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	178					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			GCTGCTCCATCGCCTGGTCCT	0.682													22	75					0	0	1	0	0
TDRD6	221400	broad.mit.edu	37	6	46658501	46658501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46658501C>T	uc003oyj.2	+	1	2636	c.2636C>T	c.(2635-2637)GCT>GTT	p.A879V	TDRD6_uc010jze.2_Missense_Mutation_p.A873V	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	879					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			AAGGCACAGGCTTTTAGGTGC	0.328													42	131					0	0	1	0	0
PLA2G7	7941	broad.mit.edu	37	6	46672983	46672983	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46672983C>T	uc010jzf.2	-	11	1365	c.1096G>A	c.(1096-1098)GGA>AGA	p.G366R	PLA2G7_uc010jzg.1_3'UTR	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	366					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			AGCATGTGTCCAATTATTTTG	0.333													9	64					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46766894	46766894	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46766894C>T	uc010jzh.1	+	5	280	c.238C>T	c.(238-240)CCT>TCT	p.P80S	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.P108S|MEP1A_uc011dwi.1_5'UTR	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	80	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			GTTCCCCATTCCTTACATCTT	0.438													29	104					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46787381	46787381	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46787381G>A	uc010jzh.1	+	7	538	c.496G>A	c.(496-498)GAG>AAG	p.E166K	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.E194K|MEP1A_uc011dwi.1_Missense_Mutation_p.E66K	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	166	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			ATTTTACCACGAGCAGTCAAG	0.478													72	150					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46797136	46797136	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46797136G>T	uc010jzh.1	+	10	1014	c.972G>T	c.(970-972)GCG>GCT	p.A324A	MEP1A_uc011dwg.1_Silent_p.A46A|MEP1A_uc011dwh.1_Silent_p.A352A|MEP1A_uc011dwi.1_Silent_p.A224A	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	324	Extracellular (Potential).|MAM.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			CGGGGTCCGCGGAAGAGGCAG	0.537													37	136					1.30998e-17	1.31657e-17	1	1	0
MEP1A	4224	broad.mit.edu	37	6	46797278	46797278	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46797278C>T	uc010jzh.1	+	10	1156	c.1114C>T	c.(1114-1116)CGC>TGC	p.R372C	MEP1A_uc011dwg.1_Missense_Mutation_p.R94C|MEP1A_uc011dwh.1_Missense_Mutation_p.R400C|MEP1A_uc011dwi.1_Missense_Mutation_p.R272C	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	372	Extracellular (Potential).|MAM.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			AGGCAATGTTCGCAAGTTGGT	0.428													36	136					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46801018	46801018	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46801018G>A	uc010jzh.1	+	11	1394	c.1352G>A	c.(1351-1353)GGG>GAG	p.G451E	MEP1A_uc011dwg.1_Missense_Mutation_p.G173E|MEP1A_uc011dwh.1_Missense_Mutation_p.G479E|MEP1A_uc011dwi.1_Missense_Mutation_p.G351E	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	451	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			ACCAGCAAAGGGGACAAGCTT	0.483													29	80					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46801068	46801068	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46801068G>A	uc010jzh.1	+	11	1444	c.1402G>A	c.(1402-1404)GGG>AGG	p.G468R	MEP1A_uc011dwg.1_Missense_Mutation_p.G190R|MEP1A_uc011dwh.1_Missense_Mutation_p.G496R|MEP1A_uc011dwi.1_Missense_Mutation_p.G368R	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	468	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			ATATGGTTTTGGGGTAACTTT	0.493													31	77					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46806723	46806723	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46806723C>T	uc010jzh.1	+	14	2133	c.2091C>T	c.(2089-2091)ATC>ATT	p.I697I	MEP1A_uc011dwg.1_Silent_p.I419I|MEP1A_uc011dwh.1_Silent_p.I725I|MEP1A_uc011dwi.1_Silent_p.I597I	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	697	EGF-like.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TCAGGTGCATCTCTGGACATG	0.552													58	139					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46825915	46825915	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46825915C>T	uc003oyo.3	-	17	4014	c.3725G>A	c.(3724-3726)GGG>GAG	p.G1242E	GPR116_uc011dwj.1_Missense_Mutation_p.G797E|GPR116_uc011dwk.1_Missense_Mutation_p.G671E|GPR116_uc003oyp.3_Missense_Mutation_p.G1100E|GPR116_uc003oyq.3_Missense_Mutation_p.G1242E|GPR116_uc010jzi.1_Missense_Mutation_p.G914E	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1242	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AAGGTTGGTCCCTGGGAACAC	0.488													27	67					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46825952	46825952	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46825952G>A	uc003oyo.3	-	17	3977	c.3688C>T	c.(3688-3690)CTC>TTC	p.L1230F	GPR116_uc011dwj.1_Missense_Mutation_p.L785F|GPR116_uc011dwk.1_Missense_Mutation_p.L659F|GPR116_uc003oyp.3_Missense_Mutation_p.L1088F|GPR116_uc003oyq.3_Missense_Mutation_p.L1230F|GPR116_uc010jzi.1_Missense_Mutation_p.L902F	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1230	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			CCCCAAGTGAGGCCCAAGAGT	0.507													41	97					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46826217	46826217	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46826217G>A	uc003oyo.3	-	17	3712	c.3423C>T	c.(3421-3423)GCC>GCT	p.A1141A	GPR116_uc011dwj.1_Silent_p.A696A|GPR116_uc011dwk.1_Silent_p.A570A|GPR116_uc003oyp.3_Silent_p.A999A|GPR116_uc003oyq.3_Silent_p.A1141A|GPR116_uc010jzi.1_Silent_p.A813A	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1141	Helical; Name=4; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			TGACCGAGATGGCAAGTGGGC	0.552													9	40					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46827113	46827113	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46827113G>A	uc003oyo.3	-	17	2816	c.2527C>T	c.(2527-2529)CCT>TCT	p.P843S	GPR116_uc011dwj.1_Missense_Mutation_p.P398S|GPR116_uc011dwk.1_Missense_Mutation_p.P272S|GPR116_uc003oyp.3_Missense_Mutation_p.P701S|GPR116_uc003oyq.3_Missense_Mutation_p.P843S|GPR116_uc010jzi.1_Missense_Mutation_p.P515S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	843	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AAGGACAAAGGAGGGCTATCT	0.448													20	40					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46851304	46851304	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46851304C>T	uc003oyo.3	-	6	893	c.604G>A	c.(604-606)GAA>AAA	p.E202K	GPR116_uc003oyp.3_Missense_Mutation_p.E202K|GPR116_uc003oyq.3_Missense_Mutation_p.E202K|GPR116_uc003oyr.2_Missense_Mutation_p.E202K	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	202	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			ACCGCTGTTTCCAAGTCGGTC	0.448													12	29					0	0	1	0	0
GPR110	266977	broad.mit.edu	37	6	46976894	46976894	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46976894G>A	uc003oyt.2	-	11	2476	c.2277C>T	c.(2275-2277)TTC>TTT	p.F759F	GPR110_uc011dwl.1_Silent_p.F447F	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	759	Helical; Name=5; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						GCACCACAACGAAGTTCACAG	0.527													30	55					0	0	1	0	0
GPR110	266977	broad.mit.edu	37	6	46976939	46976939	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46976939G>A	uc003oyt.2	-	11	2431	c.2232C>T	c.(2230-2232)CTC>CTT	p.L744L	GPR110_uc011dwl.1_Silent_p.L432L	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	744	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						CAAAAGCCAGGAGTGGTTTGC	0.473													20	68					0	0	1	0	0
GPR110	266977	broad.mit.edu	37	6	46989702	46989702	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:46989702C>T	uc003oyt.2	-	6	743	c.544G>A	c.(544-546)GAA>AAA	p.E182K	GPR110_uc011dwl.1_5'UTR|GPR110_uc003oyu.1_Missense_Mutation_p.E182K	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	182	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						ACTTGAATTTCAATTCCATTT	0.294													30	69					0	0	1	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47253785	47253785	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47253785G>A	uc003oyv.2	-	2	1076	c.643C>T	c.(643-645)CCG>TCG	p.P215S		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	215	Extracellular (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			GAGAAGGACGGGAGTGTGCCA	0.542													12	60					0	0	1	0	0
GPR111	222611	broad.mit.edu	37	6	47649221	47649221	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47649221C>T	uc010jzj.1	+	6	927	c.926C>T	c.(925-927)TCT>TTT	p.S309F	GPR111_uc010jzk.1_Missense_Mutation_p.S241F|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	309	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TTCACTTTTTCTATGAGAATT	0.393													9	155					0	0	1	0	0
GPR111	222611	broad.mit.edu	37	6	47650116	47650116	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47650116C>T	uc010jzj.1	+	6	1822	c.1821C>T	c.(1819-1821)TTC>TTT	p.F607F	GPR111_uc010jzk.1_Silent_p.F539F|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	607	Helical; Name=5; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TCCTGGCCTTCGTGATCCCAG	0.537													12	36					0	0	1	0	0
GPR111	222611	broad.mit.edu	37	6	47650329	47650329	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47650329C>T	uc010jzj.1	+	6	2035	c.2034C>T	c.(2032-2034)TTC>TTT	p.F678F	GPR111_uc010jzk.1_Silent_p.F610F|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	678	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CCCTGGCCTTCCACATTATCT	0.478													20	49					0	0	1	0	0
GPR115	221393	broad.mit.edu	37	6	47675066	47675066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47675066C>T	uc003oza.1	+	2	343	c.85C>T	c.(85-87)CAC>TAC	p.H29Y	GPR115_uc003oyz.1_Missense_Mutation_p.H86Y|GPR115_uc003ozb.1_Missense_Mutation_p.H27Y	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	29	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						ATCCAAGATTCACCTAAAAGT	0.383													8	100					0	0	1	0	0
GPR115	221393	broad.mit.edu	37	6	47678608	47678608	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47678608G>A	uc003oza.1	+	4	544	c.286G>A	c.(286-288)GAA>AAA	p.E96K	GPR115_uc003oyz.1_Missense_Mutation_p.E153K|GPR115_uc003ozb.1_Missense_Mutation_p.E94K	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	96	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						CCTTTCTGTGGAAAAACTCTT	0.393													32	65					0	0	1	0	0
GPR115	221393	broad.mit.edu	37	6	47680242	47680242	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47680242G>A	uc003oza.1	+	5	708	c.450G>A	c.(448-450)GTG>GTA	p.V150V	GPR115_uc003oyz.1_Silent_p.V207V|GPR115_uc003ozb.1_Silent_p.V148V	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	150	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						CTGACATGGTGAAATCATCAG	0.373													35	106					0	0	1	0	0
GPR115	221393	broad.mit.edu	37	6	47681866	47681866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47681866C>T	uc003oza.1	+	6	1143	c.885C>T	c.(883-885)TTC>TTT	p.F295F	GPR115_uc003oyz.1_Silent_p.F352F|GPR115_uc003ozb.1_Silent_p.F293F	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	295	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						GCATAGCTTTCCCAACCTTGG	0.468													22	43					0	0	1	0	0
GPR115	221393	broad.mit.edu	37	6	47682051	47682051	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47682051G>A	uc003oza.1	+	6	1328	c.1070G>A	c.(1069-1071)AGG>AAG	p.R357K	GPR115_uc003oyz.1_Missense_Mutation_p.R414K|GPR115_uc003ozb.1_Missense_Mutation_p.R355K	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	357	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						TCCAAGAAAAGGAGATGGGAT	0.448													21	65					0	0	1	0	0
C6orf138	442213	broad.mit.edu	37	6	47846378	47846378	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47846378G>A	uc011dwm.1	-	3	2236	c.2151C>T	c.(2149-2151)TTC>TTT	p.F717F	C6orf138_uc011dwn.1_Silent_p.F481F	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	734	Helical; (Potential).					integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						ATACAAATGTGAAAAGCAGTG	0.403													9	21					0	0	1	0	0
C6orf138	442213	broad.mit.edu	37	6	47846645	47846645	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47846645G>A	uc011dwm.1	-	3	1969	c.1884C>T	c.(1882-1884)CCC>CCT	p.P628P	C6orf138_uc011dwn.1_Silent_p.P392P	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	645						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						AGACAAAGGAGGGGTTGAACA	0.473													34	158					0	0	1	0	0
C6orf138	442213	broad.mit.edu	37	6	47976805	47976806	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:47976805_47976806CC>TT	uc011dwm.1	-	2	505_506	c.420_421GG>AA	c.(418-423)GTGGAA>GTAAAA	p.E141K	C6orf138_uc011dwn.1_5'UTR|C6orf138_uc003ozf.2_Missense_Mutation_p.E158K	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	158						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						TTTGGCACTTCCACTACCCCGC	0.48													10	28					0	0	1	0	0
RHAG	6005	broad.mit.edu	37	6	49578756	49578756	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49578756C>T	uc003ozk.3	-	7	1110	c.1048G>A	c.(1048-1050)GCA>ACA	p.A350T	RHAG_uc010jzl.2_Missense_Mutation_p.A350T|RHAG_uc010jzm.2_Intron	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	350	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					GCGCCCATTGCTACTGCCACA	0.478													34	58					0	0	1	0	0
RHAG	6005	broad.mit.edu	37	6	49585792	49585792	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49585792C>T	uc003ozk.3	-	3	543	c.481G>A	c.(481-483)GAA>AAA	p.E161K	RHAG_uc010jzl.2_Missense_Mutation_p.E161K|RHAG_uc010jzm.2_Missense_Mutation_p.E161K	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	161	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					TTAAATATTTCACTAACCAGG	0.383													5	40					0	0	1	0	0
RHAG	6005	broad.mit.edu	37	6	49585897	49585897	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49585897G>A	uc003ozk.3	-	3	438	c.376C>T	c.(376-378)CTG>TTG	p.L126L	RHAG_uc010jzl.2_Silent_p.L126L|RHAG_uc010jzm.2_Silent_p.L126L	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	126	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					AAAGATATCAGAACTGTGGCT	0.403													16	33					0	0	1	0	0
CRISP2	7180	broad.mit.edu	37	6	49663596	49663596	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49663596C>T	uc003ozq.2	-	9	813	c.557G>A	c.(556-558)GGA>GAA	p.G186E	CRISP2_uc003ozl.2_Missense_Mutation_p.G186E|CRISP2_uc003ozn.2_Missense_Mutation_p.G186E|CRISP2_uc003ozr.2_Missense_Mutation_p.G186E|CRISP2_uc003ozo.2_Missense_Mutation_p.G186E|CRISP2_uc003ozm.2_Missense_Mutation_p.G221E|CRISP2_uc003ozp.2_Missense_Mutation_p.G186E	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	186						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			ACAAGGTGTTCCTTGTTGGTA	0.338													22	61					0	0	1	0	0
CRISP2	7180	broad.mit.edu	37	6	49667581	49667581	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49667581C>T	uc003ozq.2	-	6	463	c.207G>A	c.(205-207)ACG>ACA	p.T69T	CRISP2_uc003ozl.2_Silent_p.T69T|CRISP2_uc003ozn.2_Silent_p.T69T|CRISP2_uc003ozr.2_Silent_p.T69T|CRISP2_uc003ozo.2_Silent_p.T69T|CRISP2_uc003ozm.2_Silent_p.T69T|CRISP2_uc003ozp.2_Silent_p.T69T	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	69						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TTTGGGCATTCGTTGTTACCT	0.269													26	41					0	0	1	0	0
CRISP2	7180	broad.mit.edu	37	6	49668450	49668450	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49668450C>T	uc003ozq.2	-	5	370	c.114G>A	c.(112-114)AGG>AGA	p.R38R	CRISP2_uc003ozl.2_Silent_p.R38R|CRISP2_uc003ozn.2_Silent_p.R38R|CRISP2_uc003ozr.2_Silent_p.R38R|CRISP2_uc003ozo.2_Silent_p.R38R|CRISP2_uc003ozm.2_Silent_p.R38R|CRISP2_uc003ozp.2_Silent_p.R38R	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	38						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TTACAATCTCCCTTTGCACTT	0.363													25	88					0	0	1	0	0
CRISP3	10321	broad.mit.edu	37	6	49700992	49700992	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49700992G>A	uc003ozs.2	-	6	452	c.437C>T	c.(436-438)TCT>TTT	p.S146F		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	146					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			GAGGTATGAAGAGTACCAAAC	0.328													61	129					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754281	49754281	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49754281G>A	uc003ozu.2	-	1	727	c.620C>T	c.(619-621)CCC>CTC	p.P207L		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	207					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					AGCCAGAAAGGGTCTCACTGG	0.433													46	132					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754377	49754377	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49754377G>A	uc003ozu.2	-	1	631	c.524C>T	c.(523-525)TCC>TTC	p.S175F		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	175					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TCCCACCATGGAACTATGAGC	0.473													44	61					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754498	49754498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49754498G>A	uc003ozu.2	-	1	510	c.403C>T	c.(403-405)CCC>TCC	p.P135S		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	135					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TTTCCAGAGGGATCTTGGCCC	0.507													7	109					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754616	49754616	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49754616G>A	uc003ozu.2	-	1	392	c.285C>T	c.(283-285)TTC>TTT	p.F95F		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	95					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					AGTCCTTCAGGAACAGAACAT	0.527													42	106					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754690	49754690	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49754690G>A	uc003ozu.2	-	1	318	c.211C>T	c.(211-213)CCC>TCC	p.P71S		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	71					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TCAGGCATGGGAACACCATCA	0.502													21	102					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754848	49754848	+	Missense_Mutation	SNP	C	T	T	rs149194608		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49754848C>T	uc003ozu.2	-	1	160	c.53G>A	c.(52-54)CGA>CAA	p.R18Q		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	18					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					CATGATGACTCGCTTCCCTCT	0.418													33	76					0	0	1	0	0
CRISP1	167	broad.mit.edu	37	6	49806191	49806191	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49806191G>A	uc003ozw.2	-	7	660	c.581C>T	c.(580-582)CCA>CTA	p.P194L	CRISP1_uc003ozx.2_Intron	NM_001131	NP_001122	P54107	CRIS1_HUMAN	acidic epididymal glycoprotein-like 1 isoform 1	194					fusion of sperm to egg plasma membrane	extracellular space					0	Lung NSC(77;0.0358)					GGCTTCACATGGGACGCCTGT	0.363													9	130					0	0	1	0	0
DEFB114	245928	broad.mit.edu	37	6	49928133	49928133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49928133G>A	uc011dwp.1	-	2	82	c.82C>T	c.(82-84)CGT>TGT	p.R28C		NM_001037499	NP_001032588	Q30KQ6	DB114_HUMAN	beta-defensin 114 precursor	28					defense response to bacterium	extracellular region				ovary(1)	1	Lung NSC(77;0.042)					TTGGTGCAACGATCAGCATTC	0.353													13	51					0	0	1	0	0
DEFB110	245913	broad.mit.edu	37	6	49989596	49989596	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:49989596G>A	uc003pac.2	-	1	99	c.53C>T	c.(52-54)CCA>CTA	p.P18L	DEFB110_uc011dwr.1_Missense_Mutation_p.P18L	NM_001037497	NP_001032586	Q30KQ9	DB110_HUMAN	beta-defensin 110 isoform a	18					defense response to bacterium	extracellular region				ovary(1)	1	Lung NSC(77;0.042)					CATATTACCTGGTAAAATTGT	0.303													14	50					0	0	1	0	0
DEFB112	245915	broad.mit.edu	37	6	50016297	50016297	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:50016297G>A	uc011dws.1	-	1	68	c.68C>T	c.(67-69)TCC>TTC	p.S23F		NM_001037498	NP_001032587	Q30KQ8	DB112_HUMAN	beta-defensin 112 precursor	23					defense response to bacterium	extracellular region				central_nervous_system(1)	1	Lung NSC(77;0.042)					AAATATTGTGGAAGATGTATT	0.333													13	60					0	0	1	0	0
TFAP2D	83741	broad.mit.edu	37	6	50683114	50683114	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:50683114G>A	uc003paf.2	+	2	837	c.325G>A	c.(325-327)GAG>AAG	p.E109K	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	109							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					CCACCACGGGGAGCCCACCGA	0.627													17	111					0	0	1	0	0
TFAP2D	83741	broad.mit.edu	37	6	50740495	50740495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:50740495G>A	uc003paf.2	+	8	1789	c.1277G>A	c.(1276-1278)GGA>GAA	p.G426E	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	426							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					TCTGGCCAAGGACATGCCAAC	0.488													18	44					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51497470	51497470	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:51497470C>T	uc003pah.1	-	65	11834	c.11558G>A	c.(11557-11559)AGG>AAG	p.R3853K		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3853	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CTTCTCCTTCCTAGTCACAGG	0.478													24	81					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51890209	51890209	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:51890209C>T	uc003pah.1	-	32	4675	c.4399G>A	c.(4399-4401)GGG>AGG	p.G1467R	PKHD1_uc003pai.2_Missense_Mutation_p.G1467R	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1467	IPT/TIG 9.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CTGGTTAGCCCATTGACCAGG	0.537													18	33					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51893112	51893112	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:51893112C>T	uc003pah.1	-	30	3678	c.3402G>A	c.(3400-3402)ATG>ATA	p.M1134I	PKHD1_uc003pai.2_Missense_Mutation_p.M1134I	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1134	Extracellular (Potential).|IPT/TIG 6; atypical.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CCGTATAGTTCATCAGCCTCG	0.562													25	86					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51900434	51900434	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:51900434G>A	uc003pah.1	-	28	3459	c.3183C>T	c.(3181-3183)GTC>GTT	p.V1061V	PKHD1_uc003pai.2_Silent_p.V1061V	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1061	IPT/TIG 5.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TGCTTGTAGCGACATTGATGG	0.453													30	117					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51900495	51900495	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:51900495C>T	uc003pah.1	-	28	3398	c.3122G>A	c.(3121-3123)GGC>GAC	p.G1041D	PKHD1_uc003pai.2_Missense_Mutation_p.G1041D	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1041	IPT/TIG 5.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CAAACTAGAGCCTCGGATGGT	0.428													26	52					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51921498	51921498	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:51921498C>T	uc003pah.1	-	18	1967	c.1691G>A	c.(1690-1692)CGA>CAA	p.R564Q	PKHD1_uc003pai.2_Missense_Mutation_p.R564Q	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	564	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GACAGCACCTCGTTCAAATCC	0.408													39	91					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51921502	51921502	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:51921502C>T	uc003pah.1	-	18	1963	c.1687G>A	c.(1687-1689)GAA>AAA	p.E563K	PKHD1_uc003pai.2_Missense_Mutation_p.E563K	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	563	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GCACCTCGTTCAAATCCAAGC	0.403													34	97					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51923199	51923199	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:51923199C>T	uc003pah.1	-	16	1710	c.1434G>A	c.(1432-1434)CTG>CTA	p.L478L	PKHD1_uc003pai.2_Silent_p.L478L	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	478	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CATCAGGATTCAGCCAGGTGT	0.552													40	101					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51936919	51936919	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:51936919C>T	uc003pah.1	-	8	872	c.596G>A	c.(595-597)GGA>GAA	p.G199E	PKHD1_uc003pai.2_Missense_Mutation_p.G199E	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	199	IPT/TIG 2.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TCACCAGCTTCCCATCTGCCT	0.413													10	66					0	0	1	0	0
IL17A	3605	broad.mit.edu	37	6	52052496	52052496	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:52052496C>T	uc003pak.1	+	2	168	c.123C>T	c.(121-123)TTC>TTT	p.F41F		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	41					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					ACAAGAACTTCCCCCGGACTG	0.498													16	203					0	0	1	0	0
GSTA3	2940	broad.mit.edu	37	6	52761661	52761661	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:52761661C>T	uc003pbb.2	-	7	691	c.612G>A	c.(610-612)AGG>AGA	p.R204R	GSTA3_uc010jzq.2_Silent_p.R148R	NM_000847	NP_000838	Q16772	GSTA3_HUMAN	glutathione S-transferase alpha 3	204	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity				0	Lung NSC(77;0.0912)				Glutathione(DB00143)	CGGGAGGCTTCCTTGGGCTGC	0.473													29	111					0	0	1	0	0
GSTA3	2940	broad.mit.edu	37	6	52764807	52764807	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:52764807T>A	uc003pbb.2	-	5	418	c.339A>T	c.(337-339)CGA>CGT	p.R113R	GSTA3_uc010jzq.2_Silent_p.R57R	NM_000847	NP_000838	Q16772	GSTA3_HUMAN	glutathione S-transferase alpha 3	113	GST C-terminal.		R -> Q.	RP -> PA (in Ref. 1; AAA74634).	glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity				0	Lung NSC(77;0.0912)				Glutathione(DB00143)	TTTCCTCAGGTCGACATAAGG	0.393													103	223					0	0	1	0	0
GSTA3	2940	broad.mit.edu	37	6	52764831	52764831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:52764831C>T	uc003pbb.2	-	5	394	c.315G>A	c.(313-315)ATG>ATA	p.M105I	GSTA3_uc010jzq.2_Missense_Mutation_p.M49I	NM_000847	NP_000838	Q16772	GSTA3_HUMAN	glutathione S-transferase alpha 3	105	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity				0	Lung NSC(77;0.0912)				Glutathione(DB00143)	GAAGAAGGATCATTTCATTCA	0.383													61	188					0	0	1	0	0
ICK	22858	broad.mit.edu	37	6	52880906	52880906	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:52880906G>A	uc003pbh.2	-	9	1296	c.806C>T	c.(805-807)CCC>CTC	p.P269L	ICK_uc003pbi.2_Missense_Mutation_p.P269L|ICK_uc003pbj.2_Missense_Mutation_p.P269L	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	269	Protein kinase.				intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					TCGTTTCTTGGGATCCCACTG	0.408													38	79					0	0	1	0	0
ICK	22858	broad.mit.edu	37	6	52902752	52902752	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:52902752G>A	uc003pbh.2	-	4	631	c.141C>T	c.(139-141)AAC>AAT	p.N47N	ICK_uc003pbi.2_Silent_p.N47N|ICK_uc003pbj.2_Silent_p.N47N	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	47	Protein kinase.				intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					CCTCCCGAAGGTTCATGCATT	0.299													22	47					0	0	1	0	0
FBXO9	26268	broad.mit.edu	37	6	52962573	52962573	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:52962573C>T	uc003pbo.2	+	13	1340	c.1289C>T	c.(1288-1290)CCC>CTC	p.P430L	FBXO9_uc003pbk.2_Missense_Mutation_p.P386L|FBXO9_uc003pbl.2_Missense_Mutation_p.P420L|FBXO9_uc003pbm.2_Missense_Mutation_p.P310L|FBXO9_uc003pbn.2_Missense_Mutation_p.P310L	NM_012347	NP_036479	Q9UK97	FBX9_HUMAN	F-box only protein 9 isoform 1	430						ubiquitin ligase complex	ubiquitin-protein ligase activity			pancreas(1)	1	Lung NSC(77;0.103)					ATGTACACCCCCTTGTTCTTC	0.403													7	26					0	0	1	0	0
GCM1	8521	broad.mit.edu	37	6	52993438	52993438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:52993438C>T	uc003pbp.2	-	6	1086	c.877G>A	c.(877-879)GAT>AAT	p.D293N		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	293						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					GCTTGTAGATCGCCATGATCA	0.473													9	73					0	0	1	0	0
GCM1	8521	broad.mit.edu	37	6	52999086	52999086	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:52999086C>T	uc003pbp.2	-	3	321	c.112G>A	c.(112-114)GAT>AAT	p.D38N	GCM1_uc010jzr.2_Missense_Mutation_p.D38N	NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	38	GCM.					transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					GCATAGGAATCTGGCCACTCC	0.493													9	107					0	0	1	0	0
GCLC	2729	broad.mit.edu	37	6	53364951	53364951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:53364951G>A	uc003pbw.1	-	15	1982	c.1594C>T	c.(1594-1596)CCT>TCT	p.P532S	GCLC_uc003pbv.1_Missense_Mutation_p.P256S	NM_001498	NP_001489	P48506	GSH1_HUMAN	glutamate-cysteine ligase, catalytic subunit	532					anti-apoptosis|cell redox homeostasis|cysteine metabolic process|glutamate metabolic process|glutathione biosynthetic process|negative regulation of transcription, DNA-dependent|regulation of blood vessel size|response to heat|response to hormone stimulus|response to oxidative stress|xenobiotic metabolic process	cytosol	ADP binding|ATP binding|coenzyme binding|glutamate binding|glutamate-cysteine ligase activity|magnesium ion binding			ovary(1)|central_nervous_system(1)	2	Lung NSC(77;0.0137)				L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	ATCAGTCCAGGAAACACACCT	0.478													20	108					0	0	1	0	0
KLHL31	401265	broad.mit.edu	37	6	53519041	53519041	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:53519041C>T	uc003pcb.3	-	2	1171	c.1030G>A	c.(1030-1032)GGA>AGA	p.G344R		NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	344	Kelch 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					TTGCTCCATCCATTTTCAGGG	0.498													28	79					0	0	1	0	0
KLHL31	401265	broad.mit.edu	37	6	53519078	53519078	+	Silent	SNP	G	A	A	rs138040011		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:53519078G>A	uc003pcb.3	-	2	1134	c.993C>T	c.(991-993)TCC>TCT	p.S331S		NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	331	Kelch 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					CTCTGCTAAGGGACTTCTCAG	0.488													41	89					0	0	1	0	0
KLHL31	401265	broad.mit.edu	37	6	53520004	53520004	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:53520004C>T	uc003pcb.3	-	2	208	c.67G>A	c.(67-69)GAA>AAA	p.E23K		NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	23					regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					GGGCTATCTTCTACGATTATA	0.418													21	47					0	0	1	0	0
C6orf142	90523	broad.mit.edu	37	6	53883852	53883852	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:53883852G>A	uc003pcg.3	+	1	139	c.26G>A	c.(25-27)AGA>AAA	p.R9K	C6orf142_uc003pcf.2_Missense_Mutation_p.R9K	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	9	Interaction with LMNA.					nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CGTGAAAAAAGAAGCTTATTA	0.363													15	39					0	0	1	0	0
C6orf142	90523	broad.mit.edu	37	6	53989385	53989385	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:53989385G>A	uc003pcg.3	+	3	447	c.334G>A	c.(334-336)GAA>AAA	p.E112K	C6orf142_uc003pcf.2_Missense_Mutation_p.E112K|C6orf142_uc003pch.3_Missense_Mutation_p.E50K|C6orf142_uc011dwz.1_Missense_Mutation_p.E71K|C6orf142_uc011dxa.1_Missense_Mutation_p.E123K	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	112						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					AAGGGAATTCGAAGCAAACAA	0.453													34	95					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54185403	54185403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:54185403G>A	uc003pcj.2	+	2	528	c.382G>A	c.(382-384)GAA>AAA	p.E128K	TINAG_uc003pci.2_Missense_Mutation_p.E128K|TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	128					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			TCAACATTATGAAGAGGGATC	0.303													31	109					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54186144	54186144	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:54186144C>T	uc003pcj.2	+	3	615	c.469C>T	c.(469-471)CGT>TGT	p.R157C	TINAG_uc003pci.2_3'UTR|TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	157					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			ATGCCTTGTTCGTTCAGAATT	0.378													13	39					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54219328	54219328	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:54219328G>A	uc003pcj.2	+	9	1290	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K	TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	382					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GCAAGTCCGTGAAGATTTCTT	0.338													32	93					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54735313	54735313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:54735313G>A	uc003pck.2	+	2	385	c.269G>A	c.(268-270)GGG>GAG	p.G90E		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	90										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTATCTTCAGGGACCTACTGG	0.443													30	147					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54792313	54792313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:54792313G>A	uc003pck.2	+	4	733	c.617G>A	c.(616-618)CGA>CAA	p.R206Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	206										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TAGAATATTCGAGTGCGAACA	0.303													16	86					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54804695	54804695	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:54804695C>T	uc003pck.2	+	5	1042	c.926C>T	c.(925-927)TCG>TTG	p.S309L		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	309										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TACCAGCATTCGGTGTCTTCA	0.433													26	95					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54805108	54805108	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:54805108C>T	uc003pck.2	+	5	1455	c.1339C>T	c.(1339-1341)CGG>TGG	p.R447W		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	447										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTTTGCCAATCGGCTTGCGCA	0.458													13	58					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54805618	54805618	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:54805618C>T	uc003pck.2	+	5	1965	c.1849C>T	c.(1849-1851)CCT>TCT	p.P617S		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	617										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CTTGCAGGTTCCTGAAAACCA	0.413													20	69					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54806039	54806039	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:54806039C>T	uc003pck.2	+	5	2386	c.2270C>T	c.(2269-2271)TCA>TTA	p.S757L		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	757										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GAACTTGCTTCAAAGAAGGAA	0.383													16	57					0	0	1	0	0
HCRTR2	3062	broad.mit.edu	37	6	55142266	55142266	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55142266C>T	uc003pcl.2	+	5	1166	c.851C>T	c.(850-852)TCC>TTC	p.S284F	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	284	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCAACGAAGTCCCGGATGAGC	0.502													13	46					0	0	1	0	0
HCRTR2	3062	broad.mit.edu	37	6	55142285	55142285	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55142285G>A	uc003pcl.2	+	5	1185	c.870G>A	c.(868-870)GCG>GCA	p.A290A	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	290	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GCGCTGTGGCGGCTGAAATAA	0.498													16	51					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55196641	55196641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55196641G>A	uc003pcm.1	+	2	237	c.151G>A	c.(151-153)GAT>AAT	p.D51N		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	51	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TGCCTGCAATGATTCAGGTAA	0.318													11	31					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55198609	55198609	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55198609G>A	uc003pcm.1	+	3	269	c.183G>A	c.(181-183)AGG>AGA	p.R61R		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	61	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GCAAGATGAGGAATTCATCAT	0.358													56	143					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55216155	55216156	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55216155_55216156GG>AA	uc003pcm.1	+	5	561_562	c.475_476GG>AA	c.(475-477)GGA>AAA	p.G159K		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	159	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CTCAGCAAATGGAAATCCGTGT	0.455													74	212					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55223733	55223733	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55223733G>A	uc003pcm.1	+	6	835	c.749G>A	c.(748-750)AGA>AAA	p.R250K		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	250	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CGTGTGACTAGAAAGTGCCAT	0.378													31	73					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55266593	55266593	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55266593C>T	uc003pcm.1	+	9	1213	c.1127C>T	c.(1126-1128)TCC>TTC	p.S376F		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	376	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TACAGAACTTCCAGAATATCA	0.338													16	68					0	0	1	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55381392	55381392	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55381392G>A	uc003pcn.2	-	5	556	c.397C>T	c.(397-399)CAC>TAC	p.H133Y	HMGCLL1_uc003pco.2_Missense_Mutation_p.H103Y|HMGCLL1_uc010jzx.2_Missense_Mutation_p.H4Y|HMGCLL1_uc011dxc.1_Intron|HMGCLL1_uc011dxd.1_Intron|HMGCLL1_uc011dxe.1_Intron|HMGCLL1_uc003pcp.2_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	133							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			ACTTCAGTGTGATCAGCCATC	0.363													22	83					0	0	1	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55406589	55406589	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55406589A>T	uc003pcn.2	-	4	484	c.325T>A	c.(325-327)TCC>ACC	p.S109T	HMGCLL1_uc003pco.2_Missense_Mutation_p.S79T|HMGCLL1_uc010jzx.2_5'UTR|HMGCLL1_uc011dxc.1_Missense_Mutation_p.S79T|HMGCLL1_uc011dxd.1_Missense_Mutation_p.S79T|HMGCLL1_uc011dxe.1_Missense_Mutation_p.S79T|HMGCLL1_uc003pcp.2_Missense_Mutation_p.S79T	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	109							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCAGTTTGGGAAAGTCGATTG	0.313													42	82					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55684615	55684615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55684615C>T	uc003pcq.2	-	2	1233	c.521G>A	c.(520-522)CGA>CAA	p.R174Q	BMP5_uc011dxf.1_Missense_Mutation_p.R174Q	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	174					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			GTAATGCCTTCGCTGGTGAGA	0.378													22	63					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55739229	55739229	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55739229G>A	uc003pcq.2	-	1	1147	c.435C>T	c.(433-435)CTC>CTT	p.L145L	BMP5_uc011dxf.1_Silent_p.L145L	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	145					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TGGTATCATGGAGGCTGGCTA	0.453													22	107					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55739263	55739263	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55739263G>A	uc003pcq.2	-	1	1113	c.401C>T	c.(400-402)CCT>CTT	p.P134L	BMP5_uc011dxf.1_Missense_Mutation_p.P134L	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	134					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			GGTGGTCAGAGGAGTCGTCCG	0.512													24	92					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55739306	55739306	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55739306G>A	uc003pcq.2	-	1	1070	c.358C>T	c.(358-360)CCC>TCC	p.P120S	BMP5_uc011dxf.1_Missense_Mutation_p.P120S	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	120					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TACCCATTGGGAGAGGCTGGG	0.517													42	106					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55739539	55739539	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55739539C>T	uc003pcq.2	-	1	837	c.125G>A	c.(124-126)AGA>AAA	p.R42K	BMP5_uc011dxf.1_Missense_Mutation_p.R42K	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	42					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			GTTCCGTAGTCTTCTATAAAT	0.453													62	173					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55924936	55924936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55924936G>A	uc003pcs.2	-	28	2720	c.2488C>T	c.(2488-2490)CCT>TCT	p.P830S	COL21A1_uc010jzz.2_Missense_Mutation_p.P215S|COL21A1_uc011dxg.1_Missense_Mutation_p.P203S|COL21A1_uc011dxh.1_Intron|COL21A1_uc003pcr.2_Missense_Mutation_p.P187S	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	830	Collagen-like 6.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GGTGGCCCAGGAATACCCGGG	0.522													14	36					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55925701	55925701	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55925701C>T	uc003pcs.2	-	26	2572	c.2340G>A	c.(2338-2340)TTG>TTA	p.L780L	COL21A1_uc010jzz.2_Silent_p.L165L|COL21A1_uc011dxg.1_Silent_p.L153L|COL21A1_uc011dxh.1_Silent_p.L165L|COL21A1_uc003pcr.2_Silent_p.L137L	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	780	Collagen-like 5.			L -> W (in Ref. 7; AAH45597).	cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GCTTCCCATCCAAACCTGGGG	0.478													26	31					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55935584	55935584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55935584C>T	uc003pcs.2	-	21	2210	c.1978G>A	c.(1978-1980)GAA>AAA	p.E660K	COL21A1_uc010jzz.2_Missense_Mutation_p.E45K|COL21A1_uc011dxg.1_Missense_Mutation_p.E45K|COL21A1_uc011dxh.1_Missense_Mutation_p.E45K|COL21A1_uc003pcr.2_Silent_p.V17V	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	660					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			ATTCCAGGTTCACCTTTGCTT	0.328													7	24					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55939046	55939046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55939046C>T	uc003pcs.2	-	20	2181	c.1949G>A	c.(1948-1950)GGA>GAA	p.G650E	COL21A1_uc010jzz.2_Missense_Mutation_p.G35E|COL21A1_uc011dxg.1_Missense_Mutation_p.G35E|COL21A1_uc011dxh.1_Missense_Mutation_p.G35E|COL21A1_uc003pcr.2_Missense_Mutation_p.E8K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	650	Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCCCGGTGTTCCAGGCTGGCC	0.323													34	105					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55939061	55939061	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:55939061G>A	uc003pcs.2	-	20	2166	c.1934C>T	c.(1933-1935)TCA>TTA	p.S645L	COL21A1_uc010jzz.2_Missense_Mutation_p.S30L|COL21A1_uc011dxg.1_Missense_Mutation_p.S30L|COL21A1_uc011dxh.1_Missense_Mutation_p.S30L|COL21A1_uc003pcr.2_Missense_Mutation_p.H3Y	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	645	Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CTGGCCTGGTGAGCCATTGCT	0.333													20	112					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	56035641	56035641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:56035641G>A	uc003pcs.2	-	5	1064	c.832C>T	c.(832-834)CCT>TCT	p.P278S	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.P278S|COL21A1_uc003pcu.1_Missense_Mutation_p.P278S	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	278	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TATGATGGAGGAAGACCTTCT	0.358													5	25					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	56044681	56044681	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:56044681C>T	uc003pcs.2	-	3	567	c.335G>A	c.(334-336)GGA>GAA	p.G112E	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.G112E|COL21A1_uc003pcu.1_Missense_Mutation_p.G112E	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	112	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CTTTGTGTTTCCTCCTAAGTA	0.468													17	34					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	56044729	56044729	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:56044729G>A	uc003pcs.2	-	3	519	c.287C>T	c.(286-288)TCA>TTA	p.S96L	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.S96L|COL21A1_uc003pcu.1_Missense_Mutation_p.S96L	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	96	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			ATGTTCTCCTGAATCATAGCT	0.448													9	36					0	0	1	0	0
DST	667	broad.mit.edu	37	6	56380414	56380414	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:56380414G>A	uc003pdf.2	-	66	12081	c.12053C>T	c.(12052-12054)TCA>TTA	p.S4018L	DST_uc003pcz.3_Missense_Mutation_p.S3840L|DST_uc011dxj.1_Missense_Mutation_p.S3869L|DST_uc011dxk.1_Missense_Mutation_p.S3880L|DST_uc003pcy.3_Missense_Mutation_p.S3514L	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	5926	Spectrin 10.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			ATACCTTTCTGAATTAATCTG	0.418													5	35					0	0	1	0	0
DST	667	broad.mit.edu	37	6	56417688	56417688	+	Missense_Mutation	SNP	G	A	A	rs112177059		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:56417688G>A	uc003pdf.2	-	55	9573	c.9545C>T	c.(9544-9546)TCG>TTG	p.S3182L	DST_uc003pcz.3_Missense_Mutation_p.S3004L|DST_uc011dxj.1_Missense_Mutation_p.S3033L|DST_uc011dxk.1_Missense_Mutation_p.S3044L|DST_uc003pcy.3_Missense_Mutation_p.S2678L	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	5090					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			GGATCCCAGCGAATCATGGAT	0.418													39	217					0	0	1	0	0
BEND6	221336	broad.mit.edu	37	6	56857310	56857310	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:56857310G>A	uc010kab.2	+	3	841	c.255G>A	c.(253-255)CGG>CGA	p.R85R	BEND6_uc003pdg.2_RNA	NM_152731	NP_689944	Q5SZJ8	BEND6_HUMAN	BEN domain containing 6	85	Potential.										0						CAAACACCCGGAAAGAAAACA	0.383													32	190					0	0	1	0	0
KIAA1586	57691	broad.mit.edu	37	6	56918271	56918271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:56918271C>T	uc003pdj.2	+	4	1144	c.974C>T	c.(973-975)TCA>TTA	p.S325L	KIAA1586_uc011dxm.1_Missense_Mutation_p.S298L	NM_020931	NP_065982	Q9HCI6	K1586_HUMAN	hypothetical protein LOC57691	325							nucleic acid binding				0	Lung NSC(77;0.0969)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			TCTACAGTTTCAAAGAAAACC	0.338													45	139					0	0	1	0	0
ZNF451	26036	broad.mit.edu	37	6	57013055	57013055	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:57013055C>T	uc003pdm.1	+	10	2396	c.2172C>T	c.(2170-2172)TGC>TGT	p.C724C	ZNF451_uc003pdl.2_Silent_p.C724C|ZNF451_uc003pdn.1_Silent_p.C724C|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Silent_p.C724C	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	724					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			CTTGTGGTTGCCGTGAGAGTT	0.358													10	37					0	0	1	0	0
ZNF451	26036	broad.mit.edu	37	6	57013070	57013070	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:57013070C>T	uc003pdm.1	+	10	2411	c.2187C>T	c.(2185-2187)ATC>ATT	p.I729I	ZNF451_uc003pdl.2_Silent_p.I729I|ZNF451_uc003pdn.1_Silent_p.I729I|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Silent_p.I729I	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	729					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			AGAGTTACATCTGTAAAGTCA	0.383													10	42					0	0	1	0	0
ZNF451	26036	broad.mit.edu	37	6	57013143	57013143	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:57013143C>T	uc003pdm.1	+	10	2484	c.2260C>T	c.(2260-2262)CGC>TGC	p.R754C	ZNF451_uc003pdl.2_Missense_Mutation_p.R754C|ZNF451_uc003pdn.1_Missense_Mutation_p.R754C|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.R754C	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	754	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			ACTGTGGTTTCGCTGCAGTTT	0.413													6	33					0	0	1	0	0
ZNF451	26036	broad.mit.edu	37	6	57017042	57017042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:57017042C>T	uc003pdm.1	+	12	3000	c.2776C>T	c.(2776-2778)CCG>TCG	p.P926S	ZNF451_uc003pdl.2_Missense_Mutation_p.P926S|ZNF451_uc003pdn.1_Missense_Mutation_p.P878S|uc003pdq.1_Intron	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	926					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			TTGGAAGCCTCCGCTCAACTG	0.363													29	59					0	0	1	0	0
PRIM2	5558	broad.mit.edu	37	6	57512524	57512524	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:57512524G>A	uc003pdx.2	+	15	1439	c.1352G>A	c.(1351-1353)AGC>AAC	p.S451N		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	451					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		TTTTGTGAGAGCCAACGTATT	0.373													18	130					0	0	1	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62442615	62442615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:62442615C>T	uc003peg.2	-	7	1112	c.865G>A	c.(865-867)GAT>AAT	p.D289N		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	289					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		TAGCTGTTATCATAAGTCTCA	0.378													29	90					0	0	1	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62687998	62687998	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:62687998C>T	uc003peg.2	-	4	703	c.456G>A	c.(454-456)TTG>TTA	p.L152L		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	152					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		TAATCTCTTCCAATGCATGAC	0.373													29	97					0	0	1	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62757842	62757842	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:62757842C>T	uc003peg.2	-	3	524	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	93	KH.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		CCTGTTTCTTCCTGTAGCCTC	0.373													42	143					0	0	1	0	0
LGSN	51557	broad.mit.edu	37	6	63990342	63990342	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:63990342C>T	uc003peh.2	-	4	1148	c.1114G>A	c.(1114-1116)GAC>AAC	p.D372N	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	372					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	TCTTTCCTGTCCTTGGAATAA	0.478													52	149					0	0	1	0	0
LGSN	51557	broad.mit.edu	37	6	63990484	63990484	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:63990484C>T	uc003peh.2	-	4	1006	c.972G>A	c.(970-972)AAG>AAA	p.K324K	LGSN_uc003pei.2_Missense_Mutation_p.R184K	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	324					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	ACATGTTTTTCTTCCTATCGA	0.453													12	76					0	0	1	0	0
PHF3	23469	broad.mit.edu	37	6	64408417	64408417	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:64408417T>C	uc003pep.1	+	7	2930	c.2904T>C	c.(2902-2904)TCT>TCC	p.S968S	PHF3_uc010kah.1_Silent_p.S782S|PHF3_uc003pen.2_Silent_p.S880S|PHF3_uc011dxs.1_Silent_p.S237S	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	968	TFIIS central.				multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			AGCTTTTCTCTTTTTTTCGGG	0.303													34	61					0	0	1	0	0
PHF3	23469	broad.mit.edu	37	6	64421078	64421078	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:64421078C>T	uc003pep.1	+	14	3843	c.3817C>T	c.(3817-3819)CGC>TGC	p.R1273C	PHF3_uc003pen.2_Missense_Mutation_p.R1185C|PHF3_uc011dxs.1_Missense_Mutation_p.R542C	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1273					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			TTGTGTGGTTCGCTTCACACC	0.323													10	31					0	0	1	0	0
EYS	346007	broad.mit.edu	37	6	66044946	66044946	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:66044946C>T	uc011dxu.1	-	11	2231	c.1693G>A	c.(1693-1695)GAA>AAA	p.E565K	EYS_uc003peq.2_Missense_Mutation_p.E565K|EYS_uc003per.1_Missense_Mutation_p.E565K	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	565					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						GTTGTATTTTCCAGATACATG	0.358													40	72					0	0	1	0	0
EYS	346007	broad.mit.edu	37	6	66112422	66112422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:66112422G>A	uc011dxu.1	-	7	1671	c.1133C>T	c.(1132-1134)CCT>CTT	p.P378L	EYS_uc003peq.2_Missense_Mutation_p.P378L|EYS_uc003per.1_Missense_Mutation_p.P378L	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	378	EGF-like 5.				response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						ATTCCTCAAAGGAAATGACTC	0.279													13	95					0	0	1	0	0
EYS	346007	broad.mit.edu	37	6	66204690	66204690	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:66204690G>A	uc011dxu.1	-	4	1152	c.614C>T	c.(613-615)CCA>CTA	p.P205L	EYS_uc003peq.2_Missense_Mutation_p.P205L|EYS_uc003per.1_Missense_Mutation_p.P205L|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	205	EGF-like 1.				response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						TCCAGAAAATGGAGGCTGGCA	0.393													16	45					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69640520	69640520	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:69640520C>T	uc003pev.3	+	4	1275	c.827C>T	c.(826-828)CCT>CTT	p.P276L	BAI3_uc010kak.2_Missense_Mutation_p.P276L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	276	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AAAAGGGTCCCTCAGGAACAA	0.343													8	49					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69665943	69665943	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:69665943C>T	uc003pev.3	+	7	1671	c.1223C>T	c.(1222-1224)TCG>TTG	p.S408L	BAI3_uc010kak.2_Missense_Mutation_p.S408L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	408	TSP type-1 3.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GAGTGGAGTTCGTGGAGCCAG	0.527													13	30					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69684658	69684658	+	Missense_Mutation	SNP	C	T	T	rs144426334		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:69684658C>T	uc003pev.3	+	9	1977	c.1529C>T	c.(1528-1530)CCT>CTT	p.P510L	BAI3_uc010kak.2_Missense_Mutation_p.P510L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	510	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				ATTGCAGCACCTTATGAAATA	0.413													7	65					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69758135	69758135	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:69758135G>A	uc003pev.3	+	14	2614	c.2166G>A	c.(2164-2166)ATG>ATA	p.M722I	BAI3_uc010kak.2_Missense_Mutation_p.M722I	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	722	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				ACTTTCCAATGAAAGGACGGA	0.368													36	62					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69949067	69949067	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:69949067C>T	uc003pev.3	+	20	3211	c.2763C>T	c.(2761-2763)ATC>ATT	p.I921I	BAI3_uc010kak.2_Silent_p.I921I|BAI3_uc011dxx.1_Silent_p.I127I|BAI3_uc003pex.1_Silent_p.I51I	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	921	Helical; Name=2; (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GCCTGTCTATCATCTCATCCA	0.353													48	97					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	70049347	70049347	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70049347C>T	uc003pev.3	+	26	3858	c.3410C>T	c.(3409-3411)TCA>TTA	p.S1137L	BAI3_uc010kak.2_Missense_Mutation_p.S1137L|BAI3_uc011dxx.1_Missense_Mutation_p.S343L|BAI3_uc003pex.1_Missense_Mutation_p.S267L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1137	Helical; Name=7; (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GTGTTTGATTCATTGCAAGGC	0.443													69	118					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	70064186	70064186	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70064186C>T	uc003pev.3	+	27	3969	c.3521C>T	c.(3520-3522)TCG>TTG	p.S1174L	BAI3_uc010kak.2_Missense_Mutation_p.S1174L|BAI3_uc011dxx.1_Missense_Mutation_p.S380L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1174	Poly-Ser.|Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GCAGATTCTTCGAGTTCGTTT	0.393													61	68					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	70071222	70071222	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70071222C>T	uc003pev.3	+	29	4505	c.4057C>T	c.(4057-4059)CCC>TCC	p.P1353S	BAI3_uc010kak.2_Missense_Mutation_p.P1353S|BAI3_uc011dxx.1_Missense_Mutation_p.P559S	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1353	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CAATATGAATCCCCCTGTAAT	0.423													7	109					0	0	1	0	0
COL19A1	1310	broad.mit.edu	37	6	70672746	70672746	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70672746G>A	uc003pfc.1	+	11	1127	c.1010G>A	c.(1009-1011)GGA>GAA	p.G337E	COL19A1_uc010kam.1_Missense_Mutation_p.G233E	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	337	Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						GGCAGCAAAGGAGAAACTGGT	0.274													17	43					0	0	1	0	0
COL19A1	1310	broad.mit.edu	37	6	70672748	70672748	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70672748G>A	uc003pfc.1	+	11	1129	c.1012G>A	c.(1012-1014)GAA>AAA	p.E338K	COL19A1_uc010kam.1_Missense_Mutation_p.E234K	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	338	Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CAGCAAAGGAGAAACTGGTGA	0.284													17	42					0	0	1	0	0
COL19A1	1310	broad.mit.edu	37	6	70840074	70840074	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70840074G>A	uc003pfc.1	+	18	1459	c.1342G>A	c.(1342-1344)GGA>AGA	p.G448R	COL19A1_uc010kam.1_Missense_Mutation_p.G344R	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	448	Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						TCACCCCTAGGGAAATGATGA	0.259													13	28					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70942322	70942322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70942322C>T	uc003pfg.3	-	36	2626	c.2467G>A	c.(2467-2469)GGG>AGG	p.G823R	COL9A1_uc003pfe.3_Missense_Mutation_p.G372R|COL9A1_uc003pff.3_Missense_Mutation_p.G580R	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	823	Triple-helical region (COL1).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						CCAGGGGGCCCCTTAATGCCC	0.552													12	141					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70951717	70951717	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70951717G>A	uc003pfg.3	-	30	2107	c.1948C>T	c.(1948-1950)CTC>TTC	p.L650F	COL9A1_uc003pfe.3_Intron|COL9A1_uc003pff.3_Missense_Mutation_p.L407F	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	650	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						AAGCCAGGGAGGCCAGGGCTA	0.532													6	9					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70961825	70961825	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70961825G>A	uc003pfg.3	-	28	2029	c.1870C>T	c.(1870-1872)CCT>TCT	p.P624S	COL9A1_uc003pfe.3_Missense_Mutation_p.P197S|COL9A1_uc003pff.3_Missense_Mutation_p.P381S	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	624	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						ATACTCACAGGAAGCCCCTGG	0.483													56	110					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70964202	70964202	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70964202C>T	uc003pfg.3	-	25	1855	c.1696G>A	c.(1696-1698)GAT>AAT	p.D566N	COL9A1_uc003pfe.3_Missense_Mutation_p.D139N|COL9A1_uc003pff.3_Missense_Mutation_p.D323N	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	566	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						AATCCTGCATCACCAGGAGGC	0.383													8	69					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70964210	70964210	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70964210G>A	uc003pfg.3	-	25	1847	c.1688C>T	c.(1687-1689)CCT>CTT	p.P563L	COL9A1_uc003pfe.3_Missense_Mutation_p.P136L|COL9A1_uc003pff.3_Missense_Mutation_p.P320L	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	563	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						ATCACCAGGAGGCCCAGGTTT	0.388													8	70					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70964677	70964677	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70964677G>A	uc003pfg.3	-	24	1813	c.1654C>T	c.(1654-1656)CCT>TCT	p.P552S	COL9A1_uc003pfe.3_Missense_Mutation_p.P125S|COL9A1_uc003pff.3_Missense_Mutation_p.P309S	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	552	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TTTGTTCCAGGCATTCCAGGG	0.468													11	27					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70964887	70964887	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70964887C>T	uc003pfg.3	-	23	1736	c.1577G>A	c.(1576-1578)GGA>GAA	p.G526E	COL9A1_uc003pfe.3_Missense_Mutation_p.G99E|COL9A1_uc003pff.3_Missense_Mutation_p.G283E	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	526	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						ACCAGGAATTCCTCTAGCACC	0.438													55	90					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70991123	70991123	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:70991123G>A	uc003pfg.3	-	8	1005	c.846C>T	c.(844-846)CCC>CCT	p.P282P	COL9A1_uc003pfe.3_5'Flank|COL9A1_uc003pff.3_Silent_p.P39P	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	282	Triple-helical region (COL3).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						GAACTCCAGGGGGGCCCGGAG	0.592													20	17					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	71004250	71004250	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:71004250C>T	uc003pfg.3	-	5	475	c.316G>A	c.(316-318)GGA>AGA	p.G106R		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	106	Nonhelical region (NC4).|TSP N-terminal.				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TCAGGCAGTCCACTGGGATAT	0.388													47	81					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	71012625	71012625	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:71012625C>T	uc003pfg.3	-	1	162	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	1					axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						AGCAGGTCTTCATTTTCCCAG	0.502													74	120					0	0	1	0	0
FAM135A	57579	broad.mit.edu	37	6	71191790	71191790	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:71191790C>T	uc003pfj.2	+	8	889	c.756C>T	c.(754-756)TTC>TTT	p.F252F	FAM135A_uc003pfi.2_Silent_p.F252F|FAM135A_uc003pfh.2_Silent_p.F209F|FAM135A_uc003pfk.2_Silent_p.F252F|FAM135A_uc003pfl.2_Silent_p.F89F|FAM135A_uc003pfm.1_5'UTR	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	252										central_nervous_system(1)	1						TGCTAGCCTTCAAGGGATTGC	0.393													30	62					0	0	1	0	0
FAM135A	57579	broad.mit.edu	37	6	71269569	71269569	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:71269569C>T	uc003pfj.2	+	20	4626	c.4493C>T	c.(4492-4494)TCG>TTG	p.S1498L	FAM135A_uc003pfi.2_Missense_Mutation_p.S1302L|FAM135A_uc003pfh.2_Missense_Mutation_p.S1285L|FAM135A_uc003pfl.2_Missense_Mutation_p.S1165L|FAM135A_uc003pfn.2_Missense_Mutation_p.S704L|FAM135A_uc010kan.1_Missense_Mutation_p.S240L|FAM135A_uc003pfp.2_Missense_Mutation_p.S62L	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	1498										central_nervous_system(1)	1						GTTCTTGATTCGGAAATATTT	0.373													20	22					0	0	1	0	0
OGFRL1	79627	broad.mit.edu	37	6	72006513	72006513	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:72006513C>T	uc003pfx.1	+	6	848	c.685C>T	c.(685-687)CTG>TTG	p.L229L		NM_024576	NP_078852	Q5TC84	OGRL1_HUMAN	opioid growth factor receptor-like 1	229						membrane	receptor activity				0						ATTTCAGCATCTGAATGAGTA	0.408													6	64					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	72596824	72596824	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:72596824G>A	uc003pga.2	+	1	175	c.98G>A	c.(97-99)AGG>AAG	p.R33K		NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	33	RabBD.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GAAGAGGAGAGGAACATTATC	0.622													15	15					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	72889564	72889564	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:72889564G>A	uc003pga.2	+	5	835	c.758G>A	c.(757-759)GGG>GAG	p.G253E	RIMS1_uc011dyb.1_5'Flank|RIMS1_uc003pgc.2_5'Flank|RIMS1_uc003pgb.3_5'Flank	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	253					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				CAAGCCTTGGGGCCTGAACAG	0.557													10	18					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	72889588	72889588	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:72889588C>T	uc003pga.2	+	5	859	c.782C>T	c.(781-783)TCC>TTC	p.S261F	RIMS1_uc011dyb.1_5'Flank|RIMS1_uc003pgc.2_5'Flank|RIMS1_uc003pgb.3_5'Flank	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	261					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				CAGGCTTCATCCAGGTCTAGA	0.527													6	11					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	72955525	72955525	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:72955525C>T	uc003pga.2	+	11	2166	c.2089C>T	c.(2089-2091)CCC>TCC	p.P697S	RIMS1_uc011dyb.1_Missense_Mutation_p.P323S|RIMS1_uc003pgc.2_Missense_Mutation_p.P323S|RIMS1_uc010kaq.2_Missense_Mutation_p.P171S|RIMS1_uc011dyc.1_Missense_Mutation_p.P171S|RIMS1_uc010kar.2_Missense_Mutation_p.P90S|RIMS1_uc011dyd.1_Missense_Mutation_p.P156S|RIMS1_uc003pgb.3_Missense_Mutation_p.P323S|RIMS1_uc010kas.1_Missense_Mutation_p.P156S	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	697					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TAGTGACATTCCCCGGATTCC	0.393													22	45					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	72960115	72960115	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:72960115G>A	uc003pga.2	+	13	2401	c.2324G>A	c.(2323-2325)GGA>GAA	p.G775E	RIMS1_uc011dyb.1_Missense_Mutation_p.G401E|RIMS1_uc003pgc.2_Missense_Mutation_p.G401E|RIMS1_uc010kaq.2_Missense_Mutation_p.G249E|RIMS1_uc011dyc.1_Missense_Mutation_p.G249E|RIMS1_uc010kar.2_Missense_Mutation_p.G168E|RIMS1_uc011dyd.1_Missense_Mutation_p.G234E|RIMS1_uc003pgf.2_5'UTR|RIMS1_uc003pgg.2_5'UTR|RIMS1_uc003pgi.2_5'UTR|RIMS1_uc003pgh.2_5'UTR|RIMS1_uc003pgd.2_5'UTR|RIMS1_uc003pge.2_5'UTR|RIMS1_uc011dye.1_5'Flank|RIMS1_uc003pgb.3_Missense_Mutation_p.G401E|RIMS1_uc010kas.1_Missense_Mutation_p.G234E	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	775	C2 1.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				AGAGTAGATGGACGTCCTCGA	0.348													9	19					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	72975151	72975151	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:72975151C>T	uc003pga.2	+	21	3330	c.3253C>T	c.(3253-3255)CAT>TAT	p.H1085Y	RIMS1_uc011dyb.1_Intron|RIMS1_uc003pgc.2_Intron|RIMS1_uc010kaq.2_Intron|RIMS1_uc011dyc.1_Intron|RIMS1_uc010kar.2_Intron|RIMS1_uc011dyd.1_Intron|RIMS1_uc003pgf.2_Intron|RIMS1_uc003pgg.2_Intron|RIMS1_uc003pgi.2_Intron|RIMS1_uc003pgh.2_Intron|RIMS1_uc003pgd.2_Intron|RIMS1_uc003pge.2_Intron|RIMS1_uc011dye.1_Intron|RIMS1_uc011dyf.1_Intron|RIMS1_uc010kas.1_Intron	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1085					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding	p.H1085N(1)		ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				CATTTCCCTTCATCATGAATG	0.313													5	46					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	73000453	73000453	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73000453G>A	uc003pga.2	+	25	3703	c.3626G>A	c.(3625-3627)GGA>GAA	p.G1209E	RIMS1_uc011dyb.1_Intron|RIMS1_uc003pgc.2_Intron|RIMS1_uc010kaq.2_Intron|RIMS1_uc011dyc.1_Intron|RIMS1_uc010kar.2_Intron|RIMS1_uc011dyd.1_Intron|RIMS1_uc003pgf.2_Intron|RIMS1_uc003pgg.2_Intron|RIMS1_uc003pgi.2_Intron|RIMS1_uc003pgh.2_Intron|RIMS1_uc003pgd.2_Intron|RIMS1_uc003pge.2_Intron|RIMS1_uc011dye.1_Intron|RIMS1_uc011dyf.1_Intron	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1209					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GTCATTAGGGGAAAACATCCT	0.517													4	23					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	73043362	73043362	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73043362A>G	uc003pga.2	+	29	4267	c.4190A>G	c.(4189-4191)AAG>AGG	p.K1397R	RIMS1_uc011dyb.1_Missense_Mutation_p.K794R|RIMS1_uc003pgc.2_Missense_Mutation_p.K846R|RIMS1_uc010kaq.2_Missense_Mutation_p.K717R|RIMS1_uc011dyc.1_Intron|RIMS1_uc010kar.2_Intron|RIMS1_uc011dyd.1_Intron|RIMS1_uc003pgf.2_Missense_Mutation_p.K397R|RIMS1_uc003pgg.2_Intron|RIMS1_uc003pgi.2_Intron|RIMS1_uc003pgh.2_Intron|RIMS1_uc003pgd.2_Missense_Mutation_p.K463R|RIMS1_uc003pge.2_Missense_Mutation_p.K437R|RIMS1_uc011dye.1_Missense_Mutation_p.K203R|RIMS1_uc011dyf.1_Intron	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1397	Ser-rich.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TCCATCATGAAGAGCACCAGT	0.448													3	9					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73821098	73821098	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73821098G>A	uc003pgk.2	+	7	1444	c.1097G>A	c.(1096-1098)AGA>AAA	p.R366K	KCNQ5_uc003pgj.3_Missense_Mutation_p.R366K|KCNQ5_uc011dyh.1_Missense_Mutation_p.R366K|KCNQ5_uc011dyi.1_Missense_Mutation_p.R366K|KCNQ5_uc010kat.2_Missense_Mutation_p.R366K|KCNQ5_uc011dyj.1_Missense_Mutation_p.R366K|KCNQ5_uc011dyk.1_Missense_Mutation_p.R125K	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	366					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TTTGAGAAAAGAAGGAACCCA	0.398													51	86					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73879550	73879550	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73879550C>T	uc003pgk.2	+	11	1897	c.1550C>T	c.(1549-1551)CCA>CTA	p.P517L	KCNQ5_uc011dyh.1_Missense_Mutation_p.P536L|KCNQ5_uc011dyi.1_Missense_Mutation_p.P527L|KCNQ5_uc010kat.2_Missense_Mutation_p.P508L|KCNQ5_uc011dyj.1_Intron|KCNQ5_uc011dyk.1_Missense_Mutation_p.P267L	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	517					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		CTCACCCCACCACTTAAAACT	0.403													6	41					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904255	73904255	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73904255C>T	uc003pgk.2	+	14	2264	c.1917C>T	c.(1915-1917)CTC>CTT	p.L639L	KCNQ5_uc011dyh.1_Silent_p.L658L|KCNQ5_uc011dyi.1_Silent_p.L649L|KCNQ5_uc010kat.2_Silent_p.L630L|KCNQ5_uc011dyj.1_Silent_p.L529L|KCNQ5_uc011dyk.1_Silent_p.L389L	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	639					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		CCTCAGCCCTCGCTTTGGCTT	0.473													6	48					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904976	73904976	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73904976G>T	uc003pgk.2	+	14	2985	c.2638G>T	c.(2638-2640)GAG>TAG	p.E880*	KCNQ5_uc011dyh.1_Nonsense_Mutation_p.E899*|KCNQ5_uc011dyi.1_Nonsense_Mutation_p.E890*|KCNQ5_uc010kat.2_Nonsense_Mutation_p.E871*|KCNQ5_uc011dyj.1_Nonsense_Mutation_p.E770*|KCNQ5_uc011dyk.1_Nonsense_Mutation_p.E630*	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	880					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GGGTCCCGAAGAGACAGAGAC	0.507													8	132					0.000274275	0.000274576	1	1	0
KCNQ5	56479	broad.mit.edu	37	6	73905021	73905021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73905021G>A	uc003pgk.2	+	14	3030	c.2683G>A	c.(2683-2685)GAA>AAA	p.E895K	KCNQ5_uc011dyh.1_Missense_Mutation_p.E914K|KCNQ5_uc011dyi.1_Missense_Mutation_p.E905K|KCNQ5_uc010kat.2_Missense_Mutation_p.E886K|KCNQ5_uc011dyj.1_Missense_Mutation_p.E785K|KCNQ5_uc011dyk.1_Missense_Mutation_p.E645K	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	895					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GCCTGCCAGGGAAGCTGCCTT	0.507													11	140					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73905028	73905028	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73905028C>T	uc003pgk.2	+	14	3037	c.2690C>T	c.(2689-2691)GCC>GTC	p.A897V	KCNQ5_uc011dyh.1_Missense_Mutation_p.A916V|KCNQ5_uc011dyi.1_Missense_Mutation_p.A907V|KCNQ5_uc010kat.2_Missense_Mutation_p.A888V|KCNQ5_uc011dyj.1_Missense_Mutation_p.A787V|KCNQ5_uc011dyk.1_Missense_Mutation_p.A647V	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	897					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		AGGGAAGCTGCCTTTGCATCA	0.498													11	144					0	0	1	0	0
KHDC1L	100129128	broad.mit.edu	37	6	73935101	73935101	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73935101C>T	uc003pgm.3	-	1	75	c.31G>A	c.(31-33)GAG>AAG	p.E11K	KHDC1_uc011dyl.1_RNA	NM_001126063	NP_001119535	Q5JSQ8	KHDCL_HUMAN	KH homology domain containing 1-like	11										skin(1)	1						CACCACGGCTCCTTGCTGAGA	0.537													8	48					0	0	1	0	0
KHDC1	80759	broad.mit.edu	37	6	73951407	73951407	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:73951407C>T	uc003pgo.2	-	5	1060	c.559G>A	c.(559-561)GAT>AAT	p.D187N	KHDC1_uc011dyl.1_Intron|KHDC1_uc003pgn.3_Missense_Mutation_p.D114N	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	187						integral to membrane	RNA binding			skin(1)	1						ACCAGGTCATCGTTGGTCAGA	0.557													9	64					0	0	1	0	0
DPPA5	340168	broad.mit.edu	37	6	74063623	74063623	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:74063623C>T	uc003pgs.1	-	2	250	c.245G>A	c.(244-246)TGG>TAG	p.W82*		NM_001025290	NP_001020461	A6NC42	DPPA5_HUMAN	developmental pluripotency associated 5	82	KH; atypical.				multicellular organismal development	cytoplasm	RNA binding				0						CTGGAGCATCCACTTGGTCCG	0.627													7	31					0	0	1	0	0
C6orf221	154288	broad.mit.edu	37	6	74073372	74073372	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:74073372C>T	uc003pgt.3	+	3	496	c.443C>T	c.(442-444)TCG>TTG	p.S148L		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	148										skin(2)	2						ACGCAGCGTTCGGTGGAGGTC	0.677													28	31					0	0	1	0	0
C6orf221	154288	broad.mit.edu	37	6	74073386	74073386	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:74073386G>A	uc003pgt.3	+	3	510	c.457G>A	c.(457-459)GAG>AAG	p.E153K		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	153										skin(2)	2						GGAGGTCCGGGAGGCCGGGAC	0.677													26	33					0	0	1	0	0
OOEP	441161	broad.mit.edu	37	6	74079371	74079371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:74079371G>A	uc003pgu.3	-	1	145	c.145C>T	c.(145-147)CCT>TCT	p.P49S	OOEP_uc003pgv.3_Intron	NM_001080507	NP_001073976	A6NGQ2	OOEP_HUMAN	oocyte expressed protein homolog	49	KH; atypical.					cytoplasm					0						AACACCAAAGGGTCTCTCAGT	0.612													14	103					0	0	1	0	0
DDX43	55510	broad.mit.edu	37	6	74104714	74104714	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:74104714G>A	uc003pgw.2	+	1	430	c.86G>A	c.(85-87)AGG>AAG	p.R29K	OOEP_uc003pgv.3_5'UTR|DDX43_uc011dyn.1_RNA	NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	29						intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						GCGCCAGAGAGGAGGCCGGCG	0.642													13	84					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75818801	75818801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:75818801C>T	uc003phs.2	-	52	8199	c.8033G>A	c.(8032-8034)GGA>GAA	p.G2678E	COL12A1_uc003pht.2_Missense_Mutation_p.G1514E	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2678	TSP N-terminal.|Nonhelical region (NC3).				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TGTTATATTTCCAGCTTCCTT	0.323													6	72					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75829083	75829083	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:75829083C>T	uc003phs.2	-	45	7359	c.7193G>A	c.(7192-7194)GGA>GAA	p.G2398E	COL12A1_uc003pht.2_Missense_Mutation_p.G1234E	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2398	VWFA 4.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TGTGTTTCCTCCTCTGTACCT	0.438													18	142					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75831063	75831063	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:75831063G>A	uc003phs.2	-	44	7207	c.7041C>T	c.(7039-7041)TTC>TTT	p.F2347F	COL12A1_uc003pht.2_Silent_p.F1183F	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2347	VWFA 4.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CCACAGTATTGAAGATGAATT	0.438													12	78					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75857507	75857507	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:75857507C>T	uc003phs.2	-	23	4467	c.4301G>A	c.(4300-4302)CGA>CAA	p.R1434Q	COL12A1_uc003pht.2_Missense_Mutation_p.R270Q	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1434	Fibronectin type-III 9.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AGTTTCCATTCGACTCACATA	0.368													19	132					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75902057	75902057	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:75902057C>T	uc003phs.2	-	4	371	c.205G>A	c.(205-207)GAA>AAA	p.E69K	COL12A1_uc003pht.2_Intron	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	69	Fibronectin type-III 1.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AGGGTAAATTCTTTAGTAGGC	0.328													8	56					0	0	1	0	0
TMEM30A	55754	broad.mit.edu	37	6	75994289	75994289	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:75994289G>A	uc003phw.2	-	1	344	c.66C>T	c.(64-66)ACC>ACT	p.T22T	TMEM30A_uc003phx.2_Silent_p.T22T|uc010kbd.1_5'Flank	NM_018247	NP_060717	Q9NV96	CC50A_HUMAN	transmembrane protein 30A isoform 1	22						integral to membrane					0						GAGTCTTCGCGGTGCCCCCCG	0.617													21	139					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76022865	76022865	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76022865C>T	uc003pia.2	-	5	3056	c.2683G>A	c.(2683-2685)GGG>AGG	p.G895R	FILIP1_uc003phy.1_Missense_Mutation_p.G895R|FILIP1_uc003phz.2_Missense_Mutation_p.G796R|FILIP1_uc010kbe.2_Missense_Mutation_p.G898R|FILIP1_uc003pib.1_Missense_Mutation_p.G647R	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	895										skin(3)|ovary(1)	4						CCTGGGTGCCCTGGACTGGAA	0.532													9	100					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76023520	76023520	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76023520G>A	uc003pia.2	-	5	2401	c.2028C>T	c.(2026-2028)TTC>TTT	p.F676F	FILIP1_uc003phy.1_Silent_p.F676F|FILIP1_uc003phz.2_Silent_p.F577F|FILIP1_uc010kbe.2_Silent_p.F679F|FILIP1_uc003pib.1_Silent_p.F428F	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	676	Potential.									skin(3)|ovary(1)	4						GTTGAGAGAGGAAGTTAGCCT	0.433													117	202					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76024324	76024324	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76024324C>T	uc003pia.2	-	5	1597	c.1224G>A	c.(1222-1224)AGG>AGA	p.R408R	FILIP1_uc003phy.1_Silent_p.R408R|FILIP1_uc003phz.2_Silent_p.R309R|FILIP1_uc010kbe.2_Silent_p.R411R|FILIP1_uc003pib.1_Silent_p.R160R	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	408	Potential.									skin(3)|ovary(1)	4						GCAGCTTCTTCCTCAATTCCC	0.428													14	152					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76024332	76024332	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76024332C>T	uc003pia.2	-	5	1589	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K	FILIP1_uc003phy.1_Missense_Mutation_p.E406K|FILIP1_uc003phz.2_Missense_Mutation_p.E307K|FILIP1_uc010kbe.2_Missense_Mutation_p.E409K|FILIP1_uc003pib.1_Missense_Mutation_p.E158K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	406	Potential.									skin(3)|ovary(1)	4						TTCCTCAATTCCCTACACTGG	0.423													14	143					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76024398	76024398	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76024398G>A	uc003pia.2	-	5	1523	c.1150C>T	c.(1150-1152)CGA>TGA	p.R384*	FILIP1_uc003phy.1_Nonsense_Mutation_p.R384*|FILIP1_uc003phz.2_Nonsense_Mutation_p.R285*|FILIP1_uc010kbe.2_Nonsense_Mutation_p.R387*|FILIP1_uc003pib.1_Nonsense_Mutation_p.R136*	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	384	Potential.							p.R384Q(1)		skin(3)|ovary(1)	4						ACACGCTTTCGAAGATTTTCC	0.418													13	156					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76024624	76024624	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76024624C>T	uc003pia.2	-	5	1297	c.924G>A	c.(922-924)TCG>TCA	p.S308S	FILIP1_uc003phy.1_Silent_p.S308S|FILIP1_uc003phz.2_Silent_p.S209S|FILIP1_uc010kbe.2_Silent_p.S311S|FILIP1_uc003pib.1_Silent_p.S60S	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	308	Potential.									skin(3)|ovary(1)	4						GAGAAAACCTCGAAGCCTTGT	0.418													40	60					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76024773	76024773	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76024773C>T	uc003pia.2	-	5	1148	c.775G>A	c.(775-777)GAA>AAA	p.E259K	FILIP1_uc003phy.1_Missense_Mutation_p.E259K|FILIP1_uc003phz.2_Missense_Mutation_p.E160K|FILIP1_uc010kbe.2_Missense_Mutation_p.E262K|FILIP1_uc003pib.1_Missense_Mutation_p.E11K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	259	Potential.									skin(3)|ovary(1)	4						CCAAGTTGTTCAATGTGCATT	0.398													58	105					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76063292	76063292	+	Missense_Mutation	SNP	C	T	T	rs149762228		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76063292C>T	uc003pia.2	-	4	965	c.592G>A	c.(592-594)GAC>AAC	p.D198N	FILIP1_uc003phy.1_Missense_Mutation_p.D198N|FILIP1_uc003phz.2_Missense_Mutation_p.D99N|FILIP1_uc010kbe.2_Missense_Mutation_p.D201N	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	198	Potential.									skin(3)|ovary(1)	4						GTGAAGTCGTCGCTCTTGTTC	0.532													13	162					0	0	1	0	0
SENP6	26054	broad.mit.edu	37	6	76386875	76386875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76386875C>T	uc003pid.3	+	14	2370	c.1751C>T	c.(1750-1752)CCC>CTC	p.P584L	SENP6_uc003pie.3_Missense_Mutation_p.P577L|SENP6_uc010kbf.2_RNA|SENP6_uc003pic.2_Missense_Mutation_p.P577L|SENP6_uc003pif.1_Missense_Mutation_p.P475L	NM_015571	NP_056386	Q9GZR1	SENP6_HUMAN	SUMO1/sentrin specific peptidase 6 isoform 1	584					proteolysis	cytoplasm|nucleus	cysteine-type peptidase activity			breast(2)|urinary_tract(1)|ovary(1)|lung(1)|skin(1)	6		all_hematologic(105;0.189)				GCGAAAATTCCCTTTGAAGAA	0.343													9	43					0	0	1	0	0
MYO6	4646	broad.mit.edu	37	6	76576248	76576248	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76576248C>T	uc003pih.1	+	17	1959	c.1680C>T	c.(1678-1680)CCC>CCT	p.P560P	MYO6_uc003pig.1_Silent_p.P560P|MYO6_uc003pii.1_Silent_p.P560P	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	560	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		TTCAGATTCCCAGAAAATCTA	0.323													6	76					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76712680	76712680	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76712680C>T	uc003pik.1	-	12	1376	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	416					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				AGCTGGGGTTCAACAGGAGGA	0.428													5	46					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76712688	76712688	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76712688G>A	uc003pik.1	-	12	1368	c.1238C>T	c.(1237-1239)CCT>CTT	p.P413L		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	413					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TTCAACAGGAGGAAGTTCTGG	0.423													11	38					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76728481	76728481	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76728481G>A	uc003pik.1	-	7	891	c.761C>T	c.(760-762)TCC>TTC	p.S254F		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	254	SEA 1.				visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TGGGGACTGGGAGTCAGCGAG	0.537													9	78					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76744366	76744366	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76744366G>A	uc003pik.1	-	3	570	c.440C>T	c.(439-441)TCC>TTC	p.S147F		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	147					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				GTGCTCCTGGGAATTGCTGAA	0.527													35	56					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76744460	76744460	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:76744460G>A	uc003pik.1	-	3	476	c.346C>T	c.(346-348)CGC>TGC	p.R116C		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	116					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TCAGGGATGCGATCCAGAAAG	0.502													12	59					0	0	1	0	0
PHIP	55023	broad.mit.edu	37	6	79725486	79725486	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:79725486C>T	uc003pir.2	-	14	1476	c.1250G>A	c.(1249-1251)GGA>GAA	p.G417E	PHIP_uc011dyp.1_Missense_Mutation_p.G417E	NM_017934	NP_060404	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	417					insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding			large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	6		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		ATCTTCTATTCCTTGAAGGTT	0.303													16	25					0	0	1	0	0
LCA5	167691	broad.mit.edu	37	6	80203349	80203349	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:80203349C>T	uc003pix.2	-	4	1274	c.839G>A	c.(838-840)CGA>CAA	p.R280Q	LCA5_uc003piy.2_Missense_Mutation_p.R280Q|LCA5_uc011dyq.1_RNA	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	280	Potential.				protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		GTGATATAGTCGCTGTACCTC	0.308													19	27					0	0	1	0	0
LCA5	167691	broad.mit.edu	37	6	80223044	80223044	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:80223044G>A	uc003pix.2	-	3	1040	c.605C>T	c.(604-606)TCC>TTC	p.S202F	LCA5_uc003piy.2_Missense_Mutation_p.S202F|LCA5_uc011dyq.1_RNA|LCA5_uc011dyr.1_Missense_Mutation_p.S202F	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	202	Potential.				protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		TTTCTGTAAGGAAAATTTTGT	0.378													42	44					0	0	1	0	0
ELOVL4	6785	broad.mit.edu	37	6	80634670	80634670	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:80634670C>T	uc003pja.3	-	3	687	c.368G>A	c.(367-369)AGG>AAG	p.R123K	ELOVL4_uc011dyt.1_Intron	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	123					fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	TGTACTTACCCTGACTTCATG	0.303													18	34					0	0	1	0	0
UBE2CBP	90025	broad.mit.edu	37	6	83728787	83728787	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:83728787G>A	uc003pjp.2	-	8	1023	c.915C>T	c.(913-915)TTC>TTT	p.F305F	UBE2CBP_uc011dyx.1_RNA|UBE2CBP_uc003pjq.2_Silent_p.F95F	NM_198920	NP_944602	Q7Z6J8	UB2CB_HUMAN	ubiquitin-conjugating enzyme E2C binding	305						cytoplasm	ligase activity			ovary(1)	1		all_cancers(76;0.000374)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.0548)		BRCA - Breast invasive adenocarcinoma(397;0.0944)		CCAACAAGGGGAATTTTTTGA	0.378													29	38					0	0	1	0	0
DOPEY1	23033	broad.mit.edu	37	6	83818732	83818732	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:83818732C>T	uc003pjs.1	+	5	684	c.424C>T	c.(424-426)CCT>TCT	p.P142S	DOPEY1_uc011dyy.1_Missense_Mutation_p.P142S|DOPEY1_uc010kbl.1_Missense_Mutation_p.P142S	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	142					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		AACACTGAAACCTGGTCTACA	0.388													35	56					0	0	1	0	0
ME1	4199	broad.mit.edu	37	6	84025043	84025043	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:84025043C>T	uc003pjy.2	-	6	796	c.690G>A	c.(688-690)GAG>GAA	p.E230E	ME1_uc011dzb.1_Silent_p.E155E|ME1_uc011dzc.1_Silent_p.E64E	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	230					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	AAGAAACTGCCTCCATGAATT	0.308													34	67					0	0	1	0	0
PRSS35	167681	broad.mit.edu	37	6	84233940	84233940	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:84233940G>A	uc003pjz.2	+	2	943	c.780G>A	c.(778-780)CCG>CCA	p.P260P	PRSS35_uc010kbm.2_Silent_p.P260P	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	260	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		CCCACATTCCGAAGGGCTGGG	0.537													4	28					0	0	1	0	0
SNAP91	9892	broad.mit.edu	37	6	84270636	84270636	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:84270636G>A	uc011dze.1	-	26	2790	c.2473C>T	c.(2473-2475)CCT>TCT	p.P825S	SNAP91_uc011dzd.1_Missense_Mutation_p.P323S|SNAP91_uc003pkb.2_Missense_Mutation_p.P734S|SNAP91_uc003pkc.2_Missense_Mutation_p.P795S|SNAP91_uc003pkd.2_Missense_Mutation_p.P518S|SNAP91_uc003pka.2_Missense_Mutation_p.P823S	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	825	Pro-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		GCAACAGGAGGAACTGAACTG	0.328													14	11					0	0	1	0	0
RIPPLY2	134701	broad.mit.edu	37	6	84567100	84567100	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:84567100G>A	uc003pke.2	+	4	530	c.379G>A	c.(379-381)GAA>AAA	p.E127K	CYB5R4_uc003pkf.2_5'Flank	NM_001009994	NP_001009994	Q5TAB7	RIPP2_HUMAN	ripply2 protein	127					somite rostral/caudal axis specification	nucleus					0						TCTGACCTGTGAAAATTAATC	0.279													30	63					0	0	1	0	0
TBX18	9096	broad.mit.edu	37	6	85446507	85446507	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:85446507C>T	uc003pkl.1	-	8	1720	c.1720G>A	c.(1720-1722)GGA>AGA	p.G574R	TBX18_uc010kbq.1_Intron	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	574					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		AGGTGCACTCCTTCCACAGGG	0.517													22	26					0	0	1	0	0
NT5E	4907	broad.mit.edu	37	6	86181095	86181095	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:86181095G>A	uc003pko.3	+	3	1259	c.703G>A	c.(703-705)GGT>AGT	p.G235S	NT5E_uc003pkn.2_Missense_Mutation_p.G235S|NT5E_uc010kbr.2_Missense_Mutation_p.G235S	NM_002526	NP_002517	P21589	5NTD_HUMAN	5' nucleotidase, ecto precursor	235					DNA metabolic process|purine base metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	anchored to membrane|cytoplasm|membrane fraction|plasma membrane	5'-nucleotidase activity|nucleotide binding			ovary(3)|central_nervous_system(1)	4		all_cancers(76;0.000215)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0427)		BRCA - Breast invasive adenocarcinoma(108;0.0417)	Pentoxifylline(DB00806)	GAAAGTGAGGGGTGTGGACGT	0.423													26	48					0	0	1	0	0
SNX14	57231	broad.mit.edu	37	6	86252923	86252923	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:86252923G>A	uc003pkr.2	-	14	1559	c.1366C>T	c.(1366-1368)CCT>TCT	p.P456S	SNX14_uc003pkp.2_Missense_Mutation_p.P319S|SNX14_uc003pkq.2_Missense_Mutation_p.P71S|SNX14_uc011dzg.1_Missense_Mutation_p.P404S|SNX14_uc003pks.2_Missense_Mutation_p.P412S|SNX14_uc003pkt.2_Missense_Mutation_p.P456S	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	sorting nexin 14 isoform a	456	RGS.				cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity				0		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		CAGAACATAGGAGTAAATACA	0.323													21	109					0	0	1	0	0
SNX14	57231	broad.mit.edu	37	6	86277262	86277262	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:86277262G>A	uc003pkr.2	-	5	644	c.451C>T	c.(451-453)CCG>TCG	p.P151S	SNX14_uc003pkp.2_Missense_Mutation_p.P14S|SNX14_uc003pkq.2_5'UTR|SNX14_uc011dzg.1_Missense_Mutation_p.P99S|SNX14_uc003pks.2_Intron|SNX14_uc003pkt.2_Missense_Mutation_p.P151S	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	sorting nexin 14 isoform a	151	PXA.				cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity				0		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		CTGTACCACGGATAAACAAAG	0.259													21	60					0	0	1	0	0
HTR1E	3354	broad.mit.edu	37	6	87725215	87725215	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:87725215C>T	uc003pli.2	+	2	866	c.163C>T	c.(163-165)CAG>TAG	p.Q55*		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	55	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	GAAGCTCCACCAGCCTGCCAA	0.542													25	44					0	0	1	0	0
CGA	1081	broad.mit.edu	37	6	87796037	87796037	+	Silent	SNP	C	T	T	rs142907318		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:87796037C>T	uc003plj.1	-	3	305	c.204G>A	c.(202-204)AAG>AAA	p.K68K		NM_000735	NP_000726	P01215	GLHA_HUMAN	glycoprotein hormones, alpha polypeptide	68					hormone biosynthetic process|peptide hormone processing|signal transduction	extracellular region|soluble fraction	hormone activity			ovary(1)	1		all_cancers(76;5.98e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;5.29e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.000102)		BRCA - Breast invasive adenocarcinoma(108;0.0484)		ACATCGTCTTCTTGGACCTTA	0.493													51	126					0	0	1	0	0
ZNF292	23036	broad.mit.edu	37	6	87965964	87965964	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:87965964C>T	uc003plm.3	+	8	2658	c.2617C>T	c.(2617-2619)CCT>TCT	p.P873S		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	873					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		ATCTATGCTTCCTTCAGAAAA	0.398													5	43					0	0	1	0	0
ZNF292	23036	broad.mit.edu	37	6	87967765	87967765	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:87967765C>T	uc003plm.3	+	8	4459	c.4418C>T	c.(4417-4419)TCT>TTT	p.S1473F		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1473					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		TTTCCTCGATCTGGTGTGACT	0.403													7	34					0	0	1	0	0
ZNF292	23036	broad.mit.edu	37	6	87969864	87969864	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:87969864C>T	uc003plm.3	+	8	6558	c.6517C>T	c.(6517-6519)CGA>TGA	p.R2173*		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2173	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		GAAAGAATTTCGATGTCAGGT	0.368													60	112					0	0	1	0	0
ZNF292	23036	broad.mit.edu	37	6	87970614	87970614	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:87970614C>G	uc003plm.3	+	8	7308	c.7267C>G	c.(7267-7269)CTT>GTT	p.L2423V		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2423					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		ACACCGAAATCTTCTTATTGT	0.353													7	11					0	0	1	0	0
C6orf162	57150	broad.mit.edu	37	6	88046769	88046769	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:88046769C>T	uc003plp.1	+	3	109	c.20C>T	c.(19-21)CCT>CTT	p.P7L	C6orf164_uc003plr.2_RNA|C6orf162_uc003plq.1_Missense_Mutation_p.P7L	NM_001042493	NP_001035958	Q96KF7	CF162_HUMAN	hypothetical protein LOC57150	7						integral to membrane					0		all_cancers(76;3.81e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.15e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.3e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0164)		GCACCTGAGCCTCCAACATTC	0.383													16	66					0	0	1	0	0
C6orf165	154313	broad.mit.edu	37	6	88119601	88119601	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:88119601G>A	uc003plv.2	+	2	136	c.44G>A	c.(43-45)CGA>CAA	p.R15Q	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.R15Q	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	15										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		AGTATTATACGAGAAATAGGA	0.318													8	89					0	0	1	0	0
C6orf165	154313	broad.mit.edu	37	6	88173915	88173915	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:88173915G>A	uc003plv.2	+	13	1908	c.1816G>A	c.(1816-1818)GAA>AAA	p.E606K	SLC35A1_uc003plx.2_RNA|C6orf165_uc003plw.2_Missense_Mutation_p.E418K|C6orf165_uc010kbv.1_RNA	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	606										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		AGGAAAGAGCGAAATCACCGA	0.458													17	31					0	0	1	0	0
SPACA1	81833	broad.mit.edu	37	6	88757792	88757792	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:88757792G>A	uc003pmn.2	+	1	286	c.169G>A	c.(169-171)GAG>AAG	p.E57K		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	57	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		CAACGACAGCGAGACCGCGGA	0.692													8	3					0	0	1	0	0
SPACA1	81833	broad.mit.edu	37	6	88769219	88769219	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:88769219G>A	uc003pmn.2	+	5	640	c.523G>A	c.(523-525)GAA>AAA	p.E175K		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	175	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		AGTACGCAAGGAAAGTCACCC	0.343													9	44					0	0	1	0	0
CNR1	1268	broad.mit.edu	37	6	88853872	88853872	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:88853872G>A	uc011dzq.1	-	2	4685	c.1122C>T	c.(1120-1122)CTC>CTT	p.L374L	CNR1_uc010kbz.2_Silent_p.L374L|CNR1_uc011dzr.1_Silent_p.L374L|CNR1_uc011dzs.1_Silent_p.L374L|CNR1_uc003pmq.3_Silent_p.L374L|CNR1_uc011dzt.1_Silent_p.L374L|CNR1_uc010kca.2_Silent_p.L341L	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	374	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	CCGTCTTAATGAGCTTGTTCA	0.512													31	52					0	0	1	0	0
CNR1	1268	broad.mit.edu	37	6	88853988	88853989	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:88853988_88853989GG>AA	uc011dzq.1	-	2	4568_4569	c.1005_1006CC>TT	c.(1003-1008)GCCCGC>GCTTGC	p.R336C	CNR1_uc010kbz.2_Missense_Mutation_p.R336C|CNR1_uc011dzr.1_Missense_Mutation_p.R336C|CNR1_uc011dzs.1_Missense_Mutation_p.R336C|CNR1_uc003pmq.3_Missense_Mutation_p.R336C|CNR1_uc011dzt.1_Missense_Mutation_p.R336C|CNR1_uc010kca.2_Missense_Mutation_p.R303C	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	336	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	ATGTCCATGCGGGCTTGGTCTG	0.564													44	67					0	0	1	0	0
CNR1	1268	broad.mit.edu	37	6	88854251	88854251	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:88854251G>A	uc011dzq.1	-	2	4306	c.743C>T	c.(742-744)GCC>GTC	p.A248V	CNR1_uc010kbz.2_Missense_Mutation_p.A248V|CNR1_uc011dzr.1_Missense_Mutation_p.A248V|CNR1_uc011dzs.1_Missense_Mutation_p.A248V|CNR1_uc003pmq.3_Missense_Mutation_p.A248V|CNR1_uc011dzt.1_Missense_Mutation_p.A248V|CNR1_uc010kca.2_Missense_Mutation_p.A215V	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	248	Helical; Name=4; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	AGGCAGCACGGCGATCACAAT	0.527													9	65					0	0	1	0	0
GABRR1	2569	broad.mit.edu	37	6	89888625	89888625	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:89888625G>A	uc003pna.2	-	10	1759	c.1304C>T	c.(1303-1305)TCC>TTC	p.S435F	GABRR1_uc011dzv.1_Missense_Mutation_p.S412F	NM_002042	NP_002033	P24046	GBRR1_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 1	435	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			pancreas(1)	1		all_cancers(76;9.49e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.46e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00917)	Picrotoxin(DB00466)	CCTCTGTGGGGAGCTCCTCTC	0.512													44	66					0	0	1	0	0
GABRR2	2570	broad.mit.edu	37	6	89975401	89975401	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:89975401G>A	uc003pnb.2	-	7	903	c.895C>T	c.(895-897)CTG>TTG	p.L299L	GABRR2_uc011dzx.1_Silent_p.L175L	NM_002043	NP_002034	P28476	GBRR2_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 2	299	Helical; (Potential).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0		all_cancers(76;1.67e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.77e-07)|all_epithelial(107;2.51e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0158)		ATGACCATCAGAGTGGCAGGG	0.512													33	38					0	0	1	0	0
ANKRD6	22881	broad.mit.edu	37	6	90326361	90326361	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:90326361G>A	uc003pni.3	+	8	1040	c.699G>A	c.(697-699)ACG>ACA	p.T233T	ANKRD6_uc003pne.3_Silent_p.T233T|ANKRD6_uc003pnf.3_Silent_p.T233T|ANKRD6_uc011dzy.1_Silent_p.T233T|ANKRD6_uc010kcd.2_Silent_p.T200T|LYRM2_uc010kce.1_Intron|LYRM2_uc003png.2_Intron|ANKRD6_uc003pnh.3_5'UTR	NM_014942	NP_055757	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	233	ANK 7.						protein binding			ovary(2)|pancreas(1)	3		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		GAGCAGATACGACCATTGTTA	0.473													23	36					0	0	1	0	0
ANKRD6	22881	broad.mit.edu	37	6	90340157	90340157	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:90340157G>A	uc003pni.3	+	16	1959	c.1618G>A	c.(1618-1620)GAC>AAC	p.D540N	ANKRD6_uc003pne.3_Missense_Mutation_p.D535N|ANKRD6_uc003pnf.3_Missense_Mutation_p.D505N|ANKRD6_uc011dzy.1_Missense_Mutation_p.D540N|ANKRD6_uc010kcd.2_Missense_Mutation_p.D476N|LYRM2_uc010kce.1_Intron|LYRM2_uc003png.2_Intron|ANKRD6_uc003pnh.3_Missense_Mutation_p.D136N|LYRM2_uc010kcf.1_Intron|ANKRD6_uc003pnj.3_Missense_Mutation_p.D136N	NM_014942	NP_055757	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	540							protein binding			ovary(2)|pancreas(1)	3		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		ACCAGGTGTGGACCAATTAGT	0.507													14	26					0	0	1	0	0
MDN1	23195	broad.mit.edu	37	6	90433300	90433300	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:90433300G>A	uc003pnn.1	-	39	5825	c.5709C>T	c.(5707-5709)TTC>TTT	p.F1903F		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1903					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TACTGGCAATGAACTCCATGT	0.333													12	30					0	0	1	0	0
MDN1	23195	broad.mit.edu	37	6	90455056	90455056	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:90455056G>A	uc003pnn.1	-	29	4230	c.4114C>T	c.(4114-4116)CTC>TTC	p.L1372F		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1372					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		AGCATCGCGAGTCTCCGCATG	0.453													34	53					0	0	1	0	0
MDN1	23195	broad.mit.edu	37	6	90504325	90504325	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:90504325G>A	uc003pnn.1	-	3	641	c.525C>T	c.(523-525)CTC>CTT	p.L175L	MDN1_uc003pnp.1_Silent_p.L175L	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	175					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GGCTTCTGAGGAGAGGGACAC	0.542													17	41					0	0	1	0	0
GJA10	84694	broad.mit.edu	37	6	90604284	90604284	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:90604284C>T	uc011eaa.1	+	1	97	c.97C>T	c.(97-99)CGA>TGA	p.R33*		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	33	Helical; (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		CTTCATCTTCCGAATGCTGGT	0.507													54	58					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	93964487	93964487	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:93964487C>T	uc003poe.2	-	14	2651	c.2410G>A	c.(2410-2412)GCA>ACA	p.A804T	EPHA7_uc003pof.2_Missense_Mutation_p.A799T|EPHA7_uc011eac.1_Missense_Mutation_p.A800T	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	804	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GCTTCGGGTGCTGTCCACCTT	0.353													13	23					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	93979219	93979219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:93979219C>T	uc003poe.2	-	7	1850	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K	EPHA7_uc003pof.2_Missense_Mutation_p.E537K|EPHA7_uc011eac.1_Missense_Mutation_p.E537K	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	537	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CCTGTAGCTTCCTCTAGTGTA	0.363													34	59					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	93982115	93982115	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:93982115C>T	uc003poe.2	-	6	1591	c.1350G>A	c.(1348-1350)ATG>ATA	p.M450I	EPHA7_uc003pof.2_Missense_Mutation_p.M450I|EPHA7_uc011eac.1_Missense_Mutation_p.M450I	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	450	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CTCTCTCCTTCATTACTCCAC	0.438													57	56					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	94068088	94068088	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:94068088G>A	uc003poe.2	-	4	1115	c.874C>T	c.(874-876)CAG>TAG	p.Q292*	EPHA7_uc003pof.2_Nonsense_Mutation_p.Q292*|EPHA7_uc011eac.1_Nonsense_Mutation_p.Q292*	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	292	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CGAGAGCACTGAAGATCTTGA	0.433													9	41					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	94120430	94120430	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:94120430G>A	uc003poe.2	-	3	862	c.621C>T	c.(619-621)TCC>TCT	p.S207S	EPHA7_uc003pof.2_Silent_p.S207S|EPHA7_uc011eac.1_Silent_p.S207S|EPHA7_uc003pog.3_Silent_p.S207S	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	207	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity	p.S207F(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TCTCAATAATGGACCAGCACT	0.438													5	55					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	94120730	94120730	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:94120730C>T	uc003poe.2	-	3	562	c.321G>A	c.(319-321)AGG>AGA	p.R107R	EPHA7_uc003pof.2_Silent_p.R107R|EPHA7_uc011eac.1_Silent_p.R107R|EPHA7_uc003pog.3_Silent_p.R107R	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	107	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TGTTACAATCCCTCAGGGTGA	0.408													32	58					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	94120845	94120845	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:94120845C>T	uc003poe.2	-	3	447	c.206G>A	c.(205-207)CGA>CAA	p.R69Q	EPHA7_uc003pof.2_Missense_Mutation_p.R69Q|EPHA7_uc011eac.1_Missense_Mutation_p.R69Q|EPHA7_uc003pog.3_Missense_Mutation_p.R69Q	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	69	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity	p.R69Q(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CTGGTATGTTCGTATCGGGGT	0.393													35	61					0	0	1	0	0
MANEA	79694	broad.mit.edu	37	6	96034781	96034781	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:96034781C>T	uc003poo.1	+	2	606	c.466C>T	c.(466-468)CCT>TCT	p.P156S	MANEA_uc003pon.2_Missense_Mutation_p.P156S	NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	156	Catalytic (Probable).|Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		CAGCTTTTATCCTGAATTGGG	0.403													59	118					0	0	1	0	0
MANEA	79694	broad.mit.edu	37	6	96053623	96053623	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:96053623G>A	uc003poo.1	+	5	872	c.732_splice	c.e5-1	p.K244_splice		NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha						post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		TTATTTTCTAGATATGGAAAT	0.348													16	57					0	0	1	0	0
MANEA	79694	broad.mit.edu	37	6	96053752	96053752	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:96053752C>T	uc003poo.1	+	5	1000	c.860C>T	c.(859-861)TCT>TTT	p.S287F		NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	287	Catalytic (Probable).|Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		ACCTCAGGGTCTCGGAGTATT	0.383													25	43					0	0	1	0	0
FUT9	10690	broad.mit.edu	37	6	96651377	96651377	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:96651377G>A	uc003pop.3	+	3	687	c.346G>A	c.(346-348)GAT>AAT	p.D116N		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	116	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		CATCAGTTGGGATCTGACAAA	0.463													16	30					0	0	1	0	0
FHL5	9457	broad.mit.edu	37	6	97052660	97052660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:97052660G>A	uc003pos.1	+	4	599	c.194G>A	c.(193-195)GGA>GAA	p.G65E	FHL5_uc003pot.1_Missense_Mutation_p.G65E	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	65	LIM zinc-binding 1.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		TGGCATGAAGGATGCTTCAAG	0.428													10	66					0	0	1	0	0
FHL5	9457	broad.mit.edu	37	6	97058463	97058463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:97058463G>A	uc003pos.1	+	6	925	c.520G>A	c.(520-522)GGG>AGG	p.G174R	FHL5_uc003pot.1_Missense_Mutation_p.G174R	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	174	LIM zinc-binding 3.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		AACTTCAGGTGGGATAACATT	0.413													64	103					0	0	1	0	0
C6orf168	84553	broad.mit.edu	37	6	99797051	99797051	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:99797051G>A	uc003ppj.3	-	1	481	c.198C>T	c.(196-198)ACC>ACT	p.T66T		NM_032511	NP_115900	Q5TGI0	CF168_HUMAN	hypothetical protein LOC84553	66										ovary(2)|central_nervous_system(1)	3		all_cancers(76;1.63e-06)|Acute lymphoblastic leukemia(125;5.12e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00898)|Colorectal(196;0.0699)|Lung NSC(302;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.073)		TCAAGTAAAGGGTTTTCTTCC	0.597													26	46					0	0	1	0	0
COQ3	51805	broad.mit.edu	37	6	99819417	99819417	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:99819417G>A	uc003ppk.2	-	6	803	c.776C>T	c.(775-777)TCC>TTC	p.S259F		NM_017421	NP_059117	Q9NZJ6	COQ3_HUMAN	hexaprenyldihydroxybenzoate methyltransferase	259					glycerol metabolic process|ubiquinone biosynthetic process	mitochondrial matrix	2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity|3-demethylubiquinone-9 3-O-methyltransferase activity|hexaprenyldihydroxybenzoate methyltransferase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0625)		CAAGGCATAGGAAAGTTGTGT	0.338													23	30					0	0	1	0	0
SFRS18	25957	broad.mit.edu	37	6	99851719	99851719	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:99851719G>A	uc003ppo.3	-	10	1370	c.1142C>T	c.(1141-1143)TCC>TTC	p.S381F	SFRS18_uc003ppl.2_5'Flank|SFRS18_uc003ppp.3_Missense_Mutation_p.S381F|SFRS18_uc011eag.1_Missense_Mutation_p.S381F	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	381						nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		TCCAGTGAGGGAAGCCAGTGC	0.428													10	23					0	0	1	0	0
USP45	85015	broad.mit.edu	37	6	99885165	99885165	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:99885165G>A	uc003ppx.2	-	17	2804	c.2271C>T	c.(2269-2271)TCC>TCT	p.S757S	USP45_uc003ppv.2_RNA|USP45_uc003ppw.2_Silent_p.S437S	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	ubiquitin specific peptidase 45	757					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|breast(1)	2		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		ATAATTTCCTGGAGGGTGTTC	0.388													18	62					0	0	1	0	0
MCHR2	84539	broad.mit.edu	37	6	100390947	100390947	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:100390947C>T	uc003pqh.1	-	4	780	c.465G>A	c.(463-465)TTG>TTA	p.L155L	MCHR2_uc003pqi.1_Silent_p.L155L	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	155	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		CCCAAAGGCCCAAATTGATCC	0.473													38	86					0	0	1	0	0
SIM1	6492	broad.mit.edu	37	6	100841514	100841514	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:100841514C>T	uc003pqj.3	-	10	1626	c.1419G>A	c.(1417-1419)GAG>GAA	p.E473E	SIM1_uc010kcu.2_Silent_p.E473E	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	473	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		ACCTGCCTGCCTCACATCGGC	0.642													9	73					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	102337514	102337514	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:102337514G>A	uc003pqp.3	+	11	1774	c.1525_splice	c.e11-1	p.K509_splice	GRIK2_uc003pqn.2_Splice_Site_p.K509_splice|GRIK2_uc003pqo.3_Splice_Site_p.K509_splice|GRIK2_uc010kcw.2_Splice_Site_p.K509_splice	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2						glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	TCTGTCTACAGAAAGCTGACC	0.289													9	43					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	102337651	102337651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:102337651C>T	uc003pqp.3	+	11	1910	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F	GRIK2_uc003pqn.2_Missense_Mutation_p.S554F|GRIK2_uc003pqo.3_Missense_Mutation_p.S554F|GRIK2_uc010kcw.2_Missense_Mutation_p.S554F	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	554	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	GGCGTCTTCTCCTTCCTGAAT	0.458													58	121					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	102337662	102337662	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:102337662C>T	uc003pqp.3	+	11	1921	c.1672C>T	c.(1672-1674)CCT>TCT	p.P558S	GRIK2_uc003pqn.2_Missense_Mutation_p.P558S|GRIK2_uc003pqo.3_Missense_Mutation_p.P558S|GRIK2_uc010kcw.2_Missense_Mutation_p.P558S	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	558	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	CTTCCTGAATCCTCTCTCCCC	0.448													62	119					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	102376371	102376371	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:102376371C>T	uc003pqp.3	+	13	2198	c.1949C>T	c.(1948-1950)TCG>TTG	p.S650L	GRIK2_uc003pqo.3_Missense_Mutation_p.S650L|GRIK2_uc010kcw.2_Missense_Mutation_p.S650L	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	650	Helical; (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	ATCATTTCTTCGTATACTGCT	0.363													29	31					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	102483436	102483436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:102483436C>T	uc003pqp.3	+	14	2555	c.2306C>T	c.(2305-2307)CCC>CTC	p.P769L	GRIK2_uc003pqo.3_Missense_Mutation_p.P769L|GRIK2_uc010kcw.2_Missense_Mutation_p.P769L	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	769	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	GTTGGCACTCCCATGGGTAGG	0.438													47	67					0	0	1	0	0
HACE1	57531	broad.mit.edu	37	6	105198317	105198317	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:105198317G>A	uc003pqu.1	-	20	2519	c.2242C>T	c.(2242-2244)CGA>TGA	p.R748*	HACE1_uc010kcy.1_Nonsense_Mutation_p.R230*|HACE1_uc010kcz.1_Nonsense_Mutation_p.R533*|HACE1_uc010kcx.1_Nonsense_Mutation_p.R157*|HACE1_uc003pqt.1_Nonsense_Mutation_p.R401*	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	748	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		CTTGTCATTCGAAGTTCAGTA	0.348													14	20					0	0	1	0	0
HACE1	57531	broad.mit.edu	37	6	105219820	105219820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:105219820G>A	uc003pqu.1	-	18	2271	c.1994C>T	c.(1993-1995)TCC>TTC	p.S665F	HACE1_uc010kcy.1_Missense_Mutation_p.S147F|HACE1_uc010kcz.1_Intron|HACE1_uc010kcx.1_Missense_Mutation_p.S74F|HACE1_uc003pqt.1_Missense_Mutation_p.S318F	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	665	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		CTTGTAGAAGGATCGTGTGAA	0.363													28	48					0	0	1	0	0
BVES	11149	broad.mit.edu	37	6	105549067	105549067	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:105549067C>T	uc003pqw.2	-	8	1137	c.980G>A	c.(979-981)CGA>CAA	p.R327Q	BVES_uc003pqx.2_Missense_Mutation_p.R327Q|BVES_uc003pqy.2_Missense_Mutation_p.R327Q	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	blood vessel epicardial substance isoform 5	327	Cytoplasmic (Potential).				epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity				0		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				GGCAGAGGCTCGCTGGTGTGG	0.448													16	28					0	0	1	0	0
POPDC3	64208	broad.mit.edu	37	6	105609583	105609583	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:105609583C>T	uc003prb.2	-	2	604	c.202G>A	c.(202-204)GCT>ACT	p.A68T	uc003pqz.2_Intron|POPDC3_uc003pra.2_Intron	NM_022361	NP_071756	Q9HBV1	POPD3_HUMAN	popeye protein 3	68	Helical; (Potential).					integral to membrane				skin(3)|ovary(2)	5		all_cancers(87;4.87e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0157)|Colorectal(196;0.202)|Lung NSC(302;0.238)				TCTACCCAAGCCCAGACAGCA	0.423													45	55					0	0	1	0	0
PRDM1	639	broad.mit.edu	37	6	106543539	106543539	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:106543539G>A	uc003prd.2	+	3	575	c.341G>A	c.(340-342)GGA>GAA	p.G114E		NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	114	SET.				negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		ACACGTTTTGGACCCCTAATA	0.368			D|N|Mis|F|S		DLBCL								34	31					0	0	1	0	0
PRDM1	639	broad.mit.edu	37	6	106552875	106552875	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:106552875C>T	uc003prd.2	+	5	1074	c.840C>T	c.(838-840)CTC>CTT	p.L280L	PRDM1_uc003pre.2_Silent_p.L146L	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	280					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		AAAAGGACCTCGATGACTTTA	0.507			D|N|Mis|F|S		DLBCL								44	199					0	0	1	0	0
PRDM1	639	broad.mit.edu	37	6	106554835	106554835	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:106554835G>A	uc003prd.2	+	7	2186	c.1952G>A	c.(1951-1953)CGA>CAA	p.R651Q	PRDM1_uc003pre.2_Missense_Mutation_p.R517Q	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	651	C2H2-type 3.				negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		ACCCACCTGCGACTCCATTCT	0.547			D|N|Mis|F|S		DLBCL								40	55					0	0	1	0	0
AIM1	202	broad.mit.edu	37	6	106968913	106968913	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:106968913C>T	uc003prh.2	+	2	3093	c.2606C>T	c.(2605-2607)TCC>TTC	p.S869F		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	869							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CAGAACGGTTCCCTATCTCAG	0.463													34	58					0	0	1	0	0
RTN4IP1	84816	broad.mit.edu	37	6	107019899	107019899	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:107019899C>T	uc003prj.2	-	9	1640	c.1163G>A	c.(1162-1164)CGA>CAA	p.R388Q	RTN4IP1_uc010kdd.2_3'UTR|RTN4IP1_uc003prk.2_Missense_Mutation_p.R288Q	NM_032730	NP_116119	Q8WWV3	RT4I1_HUMAN	reticulon 4 interacting protein 1 precursor	388						mitochondrion	oxidoreductase activity|zinc ion binding				0	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;9.45e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.0144)	Epithelial(6;0.000873)|all cancers(7;0.00363)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0394)	all cancers(137;0.113)|BRCA - Breast invasive adenocarcinoma(108;0.127)|Epithelial(106;0.144)		AGTCTTTCCTCGTGCGTGTCC	0.383													22	34					0	0	1	0	0
RTN4IP1	84816	broad.mit.edu	37	6	107019950	107019951	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:107019950_107019951GG>AA	uc003prj.2	-	9	1588_1589	c.1111_1112CC>TT	c.(1111-1113)CCT>TTT	p.P371F	RTN4IP1_uc010kdd.2_3'UTR|RTN4IP1_uc003prk.2_Missense_Mutation_p.P271F	NM_032730	NP_116119	Q8WWV3	RT4I1_HUMAN	reticulon 4 interacting protein 1 precursor	371						mitochondrion	oxidoreductase activity|zinc ion binding				0	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;9.45e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.0144)	Epithelial(6;0.000873)|all cancers(7;0.00363)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0394)	all cancers(137;0.113)|BRCA - Breast invasive adenocarcinoma(108;0.127)|Epithelial(106;0.144)		TTTAGAAAAAGGAAAGGTTTGT	0.381													24	46					0	0	1	0	0
MIR587	693172	broad.mit.edu	37	6	107232091	107232091	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:107232091C>T	hsa-mir-587|MI0003595	+			c.92C>T			uc003pro.1_Intron																	0						aagcccatcccatatcccacc	0													16	32					0	0	1	0	0
NR2E1	7101	broad.mit.edu	37	6	108499402	108499402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:108499402C>T	uc003psg.2	+	5	1354	c.599C>T	c.(598-600)GCT>GTT	p.A200V		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	200	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		ATCAAGTGGGCTAAGAGTGTG	0.527													21	32					0	0	1	0	0
ARMC2	84071	broad.mit.edu	37	6	109190152	109190152	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:109190152C>T	uc003pss.3	+	4	591	c.417C>T	c.(415-417)GCC>GCT	p.A139A	ARMC2_uc011eao.1_5'UTR	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	139							binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		TCAGGGCTGCCTCCCAGCGGG	0.552													21	34					0	0	1	0	0
ARMC2	84071	broad.mit.edu	37	6	109249363	109249363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:109249363C>T	uc003pss.3	+	11	1597	c.1423C>T	c.(1423-1425)CCC>TCC	p.P475S	ARMC2_uc011eao.1_Missense_Mutation_p.P310S	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	475	ARM 5.						binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		CAGTGCCCTTCCCCAGCTCTG	0.438													19	113					0	0	1	0	0
GPR6	2830	broad.mit.edu	37	6	110300424	110300424	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:110300424G>A	uc011eaw.1	+	2	289	c.109G>A	c.(109-111)GGA>AGA	p.G37R	GPR6_uc011eav.1_Missense_Mutation_p.G52R|GPR6_uc003ptu.2_Missense_Mutation_p.G37R	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	37	Extracellular (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		GGGCGAATGGGGACCCCCTGC	0.502													16	29					0	0	1	0	0
GPR6	2830	broad.mit.edu	37	6	110301203	110301203	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:110301203C>T	uc011eaw.1	+	2	1068	c.888C>T	c.(886-888)GCC>GCT	p.A296A	GPR6_uc011eav.1_Silent_p.A311A|GPR6_uc003ptu.2_Silent_p.A296A	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	296	Helical; Name=6; (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		TGCCCTTCGCCATCTATTGCG	0.622													5	46					0	0	1	0	0
WASF1	8936	broad.mit.edu	37	6	110423024	110423024	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:110423024G>A	uc003ptv.1	-	10	2126	c.1289C>T	c.(1288-1290)CCT>CTT	p.P430L	WASF1_uc003ptw.1_Missense_Mutation_p.P430L|WASF1_uc003ptx.1_Missense_Mutation_p.P430L|WASF1_uc003pty.1_Missense_Mutation_p.P430L	NM_003931	NP_003922	Q92558	WASF1_HUMAN	Wiskott-Aldrich syndrome protein family member	430	Poly-Pro.				actin filament polymerization|cellular component movement	actin cytoskeleton	actin binding				0		all_cancers(87;1.18e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		OV - Ovarian serous cystadenocarcinoma(136;0.0364)|Epithelial(106;0.051)|all cancers(137;0.0687)		AGGCAGAGGAGGCGGTGGTGG	0.572													30	41					0	0	1	0	0
C6orf186	728464	broad.mit.edu	37	6	110620340	110620340	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:110620340C>T	uc010kdu.1	-	4	571	c.571G>A	c.(571-573)GAT>AAT	p.D191N	C6orf186_uc003pub.2_5'UTR	NM_001123364	NP_001116836	Q5JXM2	CF186_HUMAN	chromosome 6 open reading frame 186 precursor	191						extracellular region					0						AAATGGGTATCATCACTTCCT	0.433													32	40					0	0	1	0	0
DDO	8528	broad.mit.edu	37	6	110714215	110714215	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:110714215G>A	uc003puc.2	-	5	877	c.873C>T	c.(871-873)CCC>CCT	p.P291P	C6orf186_uc003pub.2_Intron|DDO_uc003pud.2_Silent_p.P232P	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	263					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		CGTGGAGGGAGGGCTCCAGAG	0.572													57	102					0	0	1	0	0
DDO	8528	broad.mit.edu	37	6	110714266	110714266	+	Silent	SNP	C	T	T	rs148812598	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:110714266C>T	uc003puc.2	-	5	826	c.822G>A	c.(820-822)CCG>CCA	p.P274P	C6orf186_uc003pub.2_Intron|DDO_uc003pud.2_Silent_p.P215P	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	246					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		TTTCTGCATCCGGGGACAGAT	0.522													52	90					0	0	1	0	0
SLC22A16	85413	broad.mit.edu	37	6	110760036	110760036	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:110760036G>A	uc003puf.2	-	5	1265	c.1198C>T	c.(1198-1200)CCC>TCC	p.P400S	SLC22A16_uc003pue.2_Missense_Mutation_p.P381S	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	400	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		GTGTAGGCGGGAATTTCCACT	0.542													23	28					0	0	1	0	0
SLC22A16	85413	broad.mit.edu	37	6	110763791	110763791	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:110763791G>A	uc003puf.2	-	4	906	c.839C>T	c.(838-840)CCC>CTC	p.P280L	SLC22A16_uc003pue.2_Missense_Mutation_p.P261L	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	280	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		CAGGATAAAGGGGACAGTCAC	0.488													32	46					0	0	1	0	0
CDK19	23097	broad.mit.edu	37	6	110942510	110942510	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:110942510G>A	uc003puh.1	-	12	1247	c.1174C>T	c.(1174-1176)CCT>TCT	p.P392S	CDK19_uc003pui.1_Missense_Mutation_p.P332S|CDK19_uc011eax.1_Missense_Mutation_p.P268S	NM_015076	NP_055891	Q9BWU1	CDK19_HUMAN	cell division cycle 2-like 6 (CDK8-like)	392	Gln-rich.						ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GCCTGTGGAGGGGCTGCTGCC	0.632													61	84					0	0	1	0	0
GTF3C6	112495	broad.mit.edu	37	6	111283616	111283616	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:111283616A>T	uc003pum.2	+	5	479	c.269A>T	c.(268-270)AAA>ATA	p.K90I		NM_138408	NP_612417	Q969F1	TF3C6_HUMAN	general transcription factor IIIC, polypeptide	90						transcription factor TFIIIC complex	DNA binding|protein binding				0		all_cancers(87;0.00328)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|Colorectal(196;0.0466)|all_epithelial(87;0.0575)		OV - Ovarian serous cystadenocarcinoma(136;0.105)|all cancers(137;0.179)|Epithelial(106;0.186)		GGCAATAATAAAACAGTGCTA	0.348													12	16					0	0	1	0	0
FYN	2534	broad.mit.edu	37	6	112021399	112021399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:112021399G>A	uc003pvj.2	-	8	1110	c.770C>T	c.(769-771)TCT>TTT	p.S257F	FYN_uc003pvi.2_Intron|FYN_uc003pvk.2_Missense_Mutation_p.S257F|FYN_uc003pvh.2_Intron|FYN_uc010kdy.1_Intron	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	257					axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	GGTTTTGACAGACAGATCGGT	0.537													30	74					0	0	1	0	0
RFPL4B	442247	broad.mit.edu	37	6	112671667	112671667	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:112671667G>A	uc003pvx.1	+	3	1069	c.757G>A	c.(757-759)GGG>AGG	p.G253R		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	253	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		CTTGGGAGAAGGGGAGAGTGG	0.448													18	44					0	0	1	0	0
HS3ST5	222537	broad.mit.edu	37	6	114378681	114378682	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:114378681_114378682CC>TT	uc003pwg.3	-	2	812_813	c.780_781GG>AA	c.(778-783)ACGGAA>ACAAAA	p.E261K	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.E261K	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	261	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		GGCAGAGGTTCCGTGATGAGGC	0.431													22	43					0	0	1	0	0
HS3ST5	222537	broad.mit.edu	37	6	114378801	114378801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:114378801C>T	uc003pwg.3	-	2	693	c.661G>A	c.(661-663)GAA>AAA	p.E221K	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.E221K	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	221	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		GTGTTCACTTCGCATGTATTA	0.398													87	143					0	0	1	0	0
HS3ST5	222537	broad.mit.edu	37	6	114379287	114379287	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:114379287G>A	uc003pwg.3	-	2	207	c.175C>T	c.(175-177)CGC>TGC	p.R59C	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.R59C	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	59	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		TGCAGGGCGCGAAGTGGGAAT	0.577													12	20					0	0	1	0	0
FRK	2444	broad.mit.edu	37	6	116277770	116277770	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:116277770G>A	uc003pwi.1	-	5	1250	c.803C>T	c.(802-804)TCA>TTA	p.S268L		NM_002031	NP_002022	P42685	FRK_HUMAN	fyn-related kinase	268	Protein kinase.				negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|lung(3)	6		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		TGGATCCATTGAACCTGAAAC	0.393													29	35					0	0	1	0	0
FRK	2444	broad.mit.edu	37	6	116288845	116288845	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:116288845G>A	uc003pwi.1	-	4	1115	c.668C>T	c.(667-669)ACC>ATC	p.T223I		NM_002031	NP_002022	P42685	FRK_HUMAN	fyn-related kinase	223					negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|lung(3)	6		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		TTGGTCCACGGTTTTATACGA	0.388													36	57					0	0	1	0	0
TSPYL1	7259	broad.mit.edu	37	6	116599704	116599704	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:116599704C>T	uc003pwp.3	-	1	1577	c.1290G>A	c.(1288-1290)AGG>AGA	p.R430R	DSE_uc011ebf.1_Intron|DSE_uc003pwq.1_5'Flank|DSE_uc003pwr.2_5'Flank|DSE_uc003pws.2_5'Flank	NM_003309	NP_003300	Q9H0U9	TSYL1_HUMAN	TSPY-like 1	430					nucleosome assembly	nucleolus					0		all_cancers(87;0.0144)|all_epithelial(87;0.021)|Colorectal(196;0.234)		all cancers(137;0.0235)|OV - Ovarian serous cystadenocarcinoma(136;0.0469)|GBM - Glioblastoma multiforme(226;0.0503)|Epithelial(106;0.094)		ACCCAAAGGGCCTGGGGATCT	0.552													15	49					0	0	1	0	0
DSE	29940	broad.mit.edu	37	6	116720701	116720701	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:116720701C>T	uc003pws.2	+	2	482	c.288C>T	c.(286-288)GCC>GCT	p.A96A	DSE_uc011ebf.1_Silent_p.A96A|DSE_uc003pwq.1_Silent_p.A96A|DSE_uc011ebg.1_Silent_p.A115A|DSE_uc003pwt.2_Silent_p.A96A	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	96					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		ACTACAGTGCCCGCTGGAATG	0.547													20	19					0	0	1	0	0
DSE	29940	broad.mit.edu	37	6	116757239	116757239	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:116757239C>T	uc003pws.2	+	6	1802	c.1608C>T	c.(1606-1608)TTC>TTT	p.F536F	DSE_uc011ebg.1_Silent_p.F555F|DSE_uc003pwt.2_Silent_p.F536F|DSE_uc003pwu.2_Silent_p.F203F	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	536					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		GGGTGGTTTTCATCCGAGGAG	0.493													18	26					0	0	1	0	0
DSE	29940	broad.mit.edu	37	6	116758449	116758449	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:116758449C>T	uc003pws.2	+	6	3012	c.2818C>T	c.(2818-2820)CTC>TTC	p.L940F	DSE_uc011ebg.1_Missense_Mutation_p.L959F|DSE_uc003pwt.2_Missense_Mutation_p.L940F|DSE_uc003pwu.2_Missense_Mutation_p.L607F	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	940	Helical; (Potential).				dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		TGCAGTTCTTCTCATAGATAG	0.388													18	56					0	0	1	0	0
FAM26E	254228	broad.mit.edu	37	6	116836979	116836979	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:116836979C>T	uc003pwy.2	+	2	809	c.757C>T	c.(757-759)CCT>TCT	p.P253S	BET3L_uc011ebh.1_Intron	NM_153711	NP_714922	Q8N5C1	FA26E_HUMAN	hypothetical protein LOC254228	253						integral to membrane					0		all_cancers(87;0.0608)|all_epithelial(87;0.05)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0242)|all cancers(137;0.0419)|OV - Ovarian serous cystadenocarcinoma(136;0.0671)|Epithelial(106;0.212)		GAGGCCAGATCCTTTTCCCAT	0.478													38	38					0	0	1	0	0
FAM26D	221301	broad.mit.edu	37	6	116879329	116879329	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:116879329G>A	uc003pxa.2	+	4	770	c.471G>A	c.(469-471)GAG>GAA	p.E157E	FAM26D_uc003pwz.2_Silent_p.E114E|FAM26D_uc010ked.2_Silent_p.E156E	NM_153036	NP_694581	Q5JW98	FA26D_HUMAN	hypothetical protein LOC221301	300						integral to membrane					0		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0258)|all cancers(137;0.0458)|OV - Ovarian serous cystadenocarcinoma(136;0.0694)|Epithelial(106;0.222)		GGGTGGATGAGGATAATGAGG	0.408													16	62					0	0	1	0	0
RSPH4A	345895	broad.mit.edu	37	6	116938431	116938431	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:116938431G>A	uc003pxe.2	+	1	790	c.645G>A	c.(643-645)AAG>AAA	p.K215K	RSPH4A_uc010kee.2_Silent_p.K215K	NM_001010892	NP_001010892	Q5TD94	RSH4A_HUMAN	radial spoke head 4 homolog A isoform 1	215					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton|radial spoke					0						AGAATGCTAAGGCTTACCTGC	0.483									Kartagener_syndrome				20	82					0	0	1	0	0
GPRC6A	222545	broad.mit.edu	37	6	117114252	117114252	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:117114252C>T	uc003pxj.1	-	6	1856	c.1834G>A	c.(1834-1836)GGC>AGC	p.G612S	GPRC6A_uc003pxk.1_Missense_Mutation_p.G437S|GPRC6A_uc003pxl.1_Missense_Mutation_p.G541S	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	612	Helical; Name=1; (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		AATATTATGCCAACAACCAGA	0.418													34	63					0	0	1	0	0
RFX6	222546	broad.mit.edu	37	6	117232173	117232173	+	Missense_Mutation	SNP	C	T	T	rs143723757		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:117232173C>T	uc003pxm.2	+	7	811	c.748C>T	c.(748-750)CTT>TTT	p.L250F		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	250					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CGCTCAACACCTTGTATACCA	0.373													28	82					0	0	1	0	0
RFX6	222546	broad.mit.edu	37	6	117243236	117243236	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:117243236G>A	uc003pxm.2	+	13	1422	c.1359G>A	c.(1357-1359)AAG>AAA	p.K453K		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	453					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						AAGAACTGAAGGATCTCCTTA	0.338													14	58					0	0	1	0	0
VGLL2	245806	broad.mit.edu	37	6	117586980	117586980	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:117586980C>T	uc003pxn.2	+	1	244	c.54C>T	c.(52-54)TTC>TTT	p.F18F	VGLL2_uc003pxo.2_Silent_p.F18F	NM_182645	NP_872586	Q8N8G2	VGLL2_HUMAN	vestigial-like 2 isoform 1	18					transcription, DNA-dependent	nucleus				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(226;0.0254)|all cancers(137;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.0757)		AGCCCTACTTCGCAGCCGCCT	0.577													11	21					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117609777	117609777	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:117609777C>T	uc003pxp.1	-	43	7121	c.6922G>A	c.(6922-6924)GAA>AAA	p.E2308K	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2308	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GCATGTGGTTCCTTCTCTTCT	0.483			T	GOPC|ROS1	glioblastoma|NSCLC								28	34					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117639386	117639386	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:117639386C>T	uc003pxp.1	-	37	6169	c.5970G>A	c.(5968-5970)GAG>GAA	p.E1990E	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Silent_p.E316E	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1990	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ATTCAATCTTCTCCTGGTCTG	0.393			T	GOPC|ROS1	glioblastoma|NSCLC								24	29					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117663617	117663617	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:117663617G>A	uc003pxp.1	-	28	4814	c.4615C>T	c.(4615-4617)CCT>TCT	p.P1539S	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1539	Extracellular (Potential).|Fibronectin type-III 6.				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TGTTCCAAAGGATCTGAATAA	0.333			T	GOPC|ROS1	glioblastoma|NSCLC								6	49					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117681082	117681082	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:117681082C>T	uc003pxp.1	-	23	3737	c.3538G>A	c.(3538-3540)GCA>ACA	p.A1180T	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1180	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ACTCTTTCTGCTGAAAACGTC	0.403			T	GOPC|ROS1	glioblastoma|NSCLC								41	52					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117686752	117686752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:117686752G>A	uc003pxp.1	-	19	3164	c.2965C>T	c.(2965-2967)CAT>TAT	p.H989Y	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	989	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ACCTTAGAATGAGCACTAAAT	0.423			T	GOPC|ROS1	glioblastoma|NSCLC								24	42					0	0	1	0	0
SLC35F1	222553	broad.mit.edu	37	6	118588247	118588247	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:118588247C>T	uc003pxx.3	+	4	768	c.567C>T	c.(565-567)ATC>ATT	p.I189I	SLC35F1_uc003pxy.1_5'UTR	NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	189	Helical; (Potential).				transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		TCATCGGCATCGTTGTCTGCA	0.532													94	160					0	0	1	0	0
FAM184A	79632	broad.mit.edu	37	6	119288083	119288083	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:119288083C>T	uc003pyj.2	-	15	3298	c.2950G>A	c.(2950-2952)GAA>AAA	p.E984K	FAM184A_uc003pyk.3_Missense_Mutation_p.E815K|FAM184A_uc003pyl.3_Missense_Mutation_p.E815K|FAM184A_uc003pyi.2_RNA	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	984										ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						GGTTTTGATTCTCTCATTAGA	0.294													16	20					0	0	1	0	0
MAN1A1	4121	broad.mit.edu	37	6	119509578	119509578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:119509578C>T	uc003pym.1	-	11	2153	c.1711G>A	c.(1711-1713)GCC>ACC	p.A571T		NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	571	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		ACCTCTACGGCTTCCCAGGCC	0.348													43	89					0	0	1	0	0
MAN1A1	4121	broad.mit.edu	37	6	119569512	119569512	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:119569512C>T	uc003pym.1	-	6	1347	c.905G>A	c.(904-906)CGA>CAA	p.R302Q	MAN1A1_uc010kei.1_Missense_Mutation_p.R325Q	NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	302	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		TGCTTTCTTTCGAAAAATCTG	0.348													19	38					0	0	1	0	0
C6orf170	221322	broad.mit.edu	37	6	121577399	121577399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:121577399G>A	uc003pyo.1	-	16	1834	c.1766C>T	c.(1765-1767)TCG>TTG	p.S589L	C6orf170_uc003pyq.1_RNA|C6orf170_uc003pyp.1_Missense_Mutation_p.S108L	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	589					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		AAGTTTTTTCGAAAACTGGGC	0.338													12	22					0	0	1	0	0
GJA1	2697	broad.mit.edu	37	6	121768083	121768083	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:121768083C>T	uc003pyr.2	+	2	340	c.90C>T	c.(88-90)TTC>TTT	p.F30F	GJA1_uc011ebo.1_Intron|GJA1_uc011ebp.1_5'UTR	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	30	Helical; (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	CAGTACTTTTCATTTTCCGAA	0.532													32	61					0	0	1	0	0
GJA1	2697	broad.mit.edu	37	6	121768414	121768414	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:121768414G>A	uc003pyr.2	+	2	671	c.421G>A	c.(421-423)GAG>AAG	p.E141K	GJA1_uc011ebo.1_Missense_Mutation_p.E42K|GJA1_uc011ebp.1_Intron	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	141	Cytoplasmic (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	CGGTATTGAAGAGCATGGTAA	0.453													40	46					0	0	1	0	0
CLVS2	134829	broad.mit.edu	37	6	123369776	123369776	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:123369776C>T	uc003pzi.1	+	4	1443	c.574C>T	c.(574-576)CCA>TCA	p.P192S		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	192	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GGATAGTTTCCCAGCGCGATT	0.378													23	62					0	0	1	0	0
TRDN	10345	broad.mit.edu	37	6	123687318	123687318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:123687318C>T	uc003pzj.1	-	20	1305	c.1283G>A	c.(1282-1284)CGA>CAA	p.R428Q	TRDN_uc003pzk.1_Missense_Mutation_p.R429Q|TRDN_uc003pzl.1_Missense_Mutation_p.R429Q|TRDN_uc010kem.1_5'UTR	NM_006073	NP_006064	Q13061	TRDN_HUMAN	triadin	428	Lumenal.				muscle contraction	integral to membrane|plasma membrane|sarcoplasmic reticulum membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.184)		CTCTTTGGCTCGTTCAGTTTC	0.308													8	14					0	0	1	0	0
STL	7955	broad.mit.edu	37	6	125231419	125231419	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:125231419G>A	uc003pzq.2	-	7		c.3315C>T				NR_026876				Homo sapiens mRNA; cDNA DKFZp451I132 (from clone DKFZp451I132).												0						AATTTGTTATGAAATTGGAGC	0.308			T	ETV6	B-ALL								6	12					0	0	1	0	0
STL	7955	broad.mit.edu	37	6	125233416	125233416	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:125233416C>T	uc003pzq.2	-	7		c.1318G>A				NR_026876				Homo sapiens mRNA; cDNA DKFZp451I132 (from clone DKFZp451I132).												0						TCCTGCAATTCCAGTCAATTT	0.393			T	ETV6	B-ALL								7	50					0	0	1	0	0
RNF217	154214	broad.mit.edu	37	6	125397960	125397960	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:125397960C>T	uc003pzs.2	+	6	901	c.563C>T	c.(562-564)CCA>CTA	p.P188L	RNF217_uc003pzr.2_Missense_Mutation_p.P245L|RNF217_uc003pzt.2_RNA	NM_152553	NP_689766	Q8TC41	RN217_HUMAN	ring finger protein 217	188					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0162)		CGCTACCTCCCAGAGAGACCT	0.438													49	88					0	0	1	0	0
RNF217	154214	broad.mit.edu	37	6	125403600	125403600	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:125403600G>A	uc003pzs.2	+	8	1023	c.685G>A	c.(685-687)GAA>AAA	p.E229K	RNF217_uc003pzr.2_Intron|RNF217_uc003pzt.2_Intron	NM_152553	NP_689766	Q8TC41	RN217_HUMAN	ring finger protein 217	229					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0162)		tacagttgaggaaattaagac	0.035													6	9					0	0	1	0	0
TPD52L1	7164	broad.mit.edu	37	6	125574873	125574873	+	Missense_Mutation	SNP	C	T	T	rs34034771		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:125574873C>T	uc003pzu.1	+	5	616	c.397C>T	c.(397-399)CGC>TGC	p.R133C	TPD52L1_uc003pzv.1_Missense_Mutation_p.R133C|TPD52L1_uc003pzw.1_Intron|TPD52L1_uc003pzx.1_3'UTR|TPD52L1_uc003pzy.1_Missense_Mutation_p.R104C|TPD52L1_uc003pzz.1_Intron	NM_003287	NP_003278	Q16890	TPD53_HUMAN	tumor protein D52-like 1 isoform 1	133					DNA fragmentation involved in apoptotic nuclear change|G2/M transition of mitotic cell cycle|induction of apoptosis|positive regulation of JNK cascade|positive regulation of MAP kinase activity	perinuclear region of cytoplasm	caspase activator activity|protein heterodimerization activity|protein homodimerization activity				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0265)		TTACTCCATTCGCCATTCCAT	0.299													33	66					0	0	1	0	0
RSPO3	84870	broad.mit.edu	37	6	127476394	127476394	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:127476394G>A	uc003qar.2	+	4	735	c.445G>A	c.(445-447)GAG>AAG	p.E149K	RSPO3_uc003qas.1_Missense_Mutation_p.E149K	NM_032784	NP_116173	Q9BXY4	RSPO3_HUMAN	R-spondin 3 precursor	149	TSP type-1.					extracellular region	heparin binding				0				GBM - Glioblastoma multiforme(226;0.0555)		AGTGCACTGTGAGGTCAGTGA	0.428													57	96					0	0	1	0	0
C6orf174	387104	broad.mit.edu	37	6	127796962	127796962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:127796962C>T	uc003qbd.2	-	6	3074	c.2209G>A	c.(2209-2211)GAC>AAC	p.D737N	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	737						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GAGGCCAGGTCGTAGCGCTGC	0.677													54	50					0	0	1	0	0
C6orf174	387104	broad.mit.edu	37	6	127797208	127797208	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:127797208C>T	uc003qbd.2	-	6	2828	c.1963G>A	c.(1963-1965)GAG>AAG	p.E655K	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	655	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		AGCTCCGTCTCGTCTTCCACC	0.632													9	60					0	0	1	0	0
C6orf174	387104	broad.mit.edu	37	6	127797571	127797571	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:127797571C>T	uc003qbd.2	-	6	2465	c.1600G>A	c.(1600-1602)GAA>AAA	p.E534K	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	534	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GCGGCTTCTTCCTTAACAAAC	0.403													34	61					0	0	1	0	0
C6orf58	352999	broad.mit.edu	37	6	127898505	127898505	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:127898505G>A	uc003qbh.2	+	1	187	c.175G>A	c.(175-177)GAG>AAG	p.E59K		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	59						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		GGTATACCTTGAGAGAATGGG	0.438													55	63					0	0	1	0	0
C6orf58	352999	broad.mit.edu	37	6	127901570	127901570	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:127901570G>A	uc003qbh.2	+	3	561	c.549G>A	c.(547-549)ATG>ATA	p.M183I		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	183						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		CTGAGACAATGAACAAGTGGA	0.398													32	62					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128134385	128134385	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:128134385G>A	uc003qbi.2	-	5	1720	c.1401C>T	c.(1399-1401)TCC>TCT	p.S467S	THEMIS_uc010kfa.2_Silent_p.S370S|THEMIS_uc011ebt.1_Silent_p.S467S|THEMIS_uc010kfb.2_Silent_p.S432S	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	467	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						CCTCTTCAATGGAAAGATCCC	0.473													32	35					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128150761	128150761	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:128150761C>T	uc003qbi.2	-	4	888	c.569G>A	c.(568-570)TGG>TAG	p.W190*	THEMIS_uc010kfa.2_Nonsense_Mutation_p.W93*|THEMIS_uc011ebt.1_Nonsense_Mutation_p.W190*|THEMIS_uc010kfb.2_Nonsense_Mutation_p.W155*	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	190	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						AGGAATCTTCCATTCAACAAT	0.353													33	48					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128388858	128388858	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:128388858G>A	uc003qbk.2	-	12	2330	c.1963C>T	c.(1963-1965)CCT>TCT	p.P655S	PTPRK_uc003qbj.2_Missense_Mutation_p.P655S|PTPRK_uc010kfc.2_Missense_Mutation_p.P655S|PTPRK_uc011ebu.1_Missense_Mutation_p.P655S|PTPRK_uc003qbl.1_Missense_Mutation_p.P525S|PTPRK_uc011ebv.1_Missense_Mutation_p.P655S	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	655	Extracellular (Potential).|Fibronectin type-III 4.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TATGTGACAGGAACCTGGTAG	0.522													25	51					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128643385	128643385	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:128643385C>T	uc003qbk.2	-	3	661	c.294G>A	c.(292-294)ATG>ATA	p.M98I	PTPRK_uc003qbj.2_Missense_Mutation_p.M98I|PTPRK_uc010kfc.2_Missense_Mutation_p.M98I|PTPRK_uc011ebu.1_Missense_Mutation_p.M98I|PTPRK_uc003qbl.1_Intron|PTPRK_uc011ebv.1_Missense_Mutation_p.M98I|PTPRK_uc003qbm.3_Missense_Mutation_p.M27I	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	98	Extracellular (Potential).|MAM.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CGTTCTCCTTCATTGTAGGCA	0.388													75	73					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129419523	129419523	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:129419523C>T	uc003qbn.2	+	4	707	c.602C>T	c.(601-603)TCA>TTA	p.S201L	LAMA2_uc003qbo.2_Missense_Mutation_p.S201L	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	201	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		ATCTGCACTTCATTTTACTCC	0.433													38	46					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129470130	129470130	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:129470130C>T	uc003qbn.2	+	7	1021	c.916C>T	c.(916-918)CGC>TGC	p.R306C	LAMA2_uc003qbo.2_Missense_Mutation_p.R306C	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	306	Laminin EGF-like 1.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CTAGAAATCTCGCTGTGAGTG	0.418													35	58					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129498871	129498871	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:129498871C>T	uc003qbn.2	+	10	1432	c.1327C>T	c.(1327-1329)CAT>TAT	p.H443Y	LAMA2_uc003qbo.2_Missense_Mutation_p.H443Y	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	443	Laminin EGF-like 3.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TGGATCCTGTCATTGCAAAAC	0.443													18	34					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129704356	129704356	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:129704356G>A	uc003qbn.2	+	35	5154	c.5049G>A	c.(5047-5049)AAG>AAA	p.K1683K	LAMA2_uc003qbo.2_Silent_p.K1683K	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1683	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AATTCATTAAGGAGCTTGCCC	0.458													10	16					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129712754	129712754	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:129712754G>A	uc003qbn.2	+	36	5295	c.5190G>A	c.(5188-5190)AGG>AGA	p.R1730R	LAMA2_uc003qbo.2_Silent_p.R1730R	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1730	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AACTGAGGAGGAAAAATCTAG	0.353													34	41					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129833610	129833610	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:129833610G>A	uc003qbn.2	+	62	9065	c.8960G>A	c.(8959-8961)GGA>GAA	p.G2987E	LAMA2_uc003qbo.2_Missense_Mutation_p.G2983E|uc003qbq.2_Intron	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2987	Laminin G-like 5.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AAAATGGATGGAATGGGTATT	0.388													58	106					0	0	1	0	0
ARHGAP18	93663	broad.mit.edu	37	6	129921871	129921871	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:129921871G>A	uc003qbr.2	-	11	1577	c.1488C>T	c.(1486-1488)TCC>TCT	p.S496S	ARHGAP18_uc011ebw.1_Silent_p.S496S	NM_033515	NP_277050	Q8N392	RHG18_HUMAN	Rho GTPase activating protein 18	496	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			ovary(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(136;0.0621)|GBM - Glioblastoma multiforme(226;0.0638)|all cancers(137;0.074)		GCTGTTCACTGGACTTCAATC	0.363													27	78					0	0	1	0	0
SAMD3	154075	broad.mit.edu	37	6	130465869	130465869	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:130465869C>T	uc003qbv.2	-	13	1685	c.1359G>A	c.(1357-1359)AGG>AGA	p.R453R	SAMD3_uc003qbx.2_Silent_p.R453R|SAMD3_uc003qbw.2_Silent_p.R453R	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	453										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TGAGCCTCTCCCTTTCTAAAT	0.443													24	29					0	0	1	0	0
SAMD3	154075	broad.mit.edu	37	6	130505248	130505248	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:130505248G>A	uc003qbv.2	-	8	980	c.654C>T	c.(652-654)TTC>TTT	p.F218F	SAMD3_uc003qbx.2_Silent_p.F218F|SAMD3_uc003qbw.2_Silent_p.F218F|SAMD3_uc010kfg.1_Silent_p.F218F|SAMD3_uc003qby.2_Silent_p.F218F|SAMD3_uc003qbz.1_Silent_p.F177F	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	218										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		GGTCACTTACGAAGCCACAGC	0.468													10	13					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762808	130762808	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:130762808G>A	uc003qca.2	+	3	2112	c.1241G>A	c.(1240-1242)CGG>CAG	p.R414Q	TMEM200A_uc010kfh.2_Missense_Mutation_p.R414Q|TMEM200A_uc010kfi.2_Missense_Mutation_p.R414Q|TMEM200A_uc003qcb.2_Missense_Mutation_p.R414Q	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	414	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GCAGAACAACGGAAACATCCA	0.483													27	33					0	0	1	0	0
EPB41L2	2037	broad.mit.edu	37	6	131186709	131186710	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:131186709_131186710GG>AA	uc003qch.2	-	17	2977_2978	c.2795_2796CC>TT	c.(2794-2796)TCC>TTT	p.S932F	EPB41L2_uc003qce.1_Missense_Mutation_p.S310F|EPB41L2_uc003qcf.1_Intron|EPB41L2_uc003qcg.1_Missense_Mutation_p.S674F|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Missense_Mutation_p.S779F|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc003qcd.1_Missense_Mutation_p.S93F	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	932	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		TTGTTGACACGGACTCAGATGT	0.455													20	48					0	0	1	0	0
EPB41L2	2037	broad.mit.edu	37	6	131186724	131186724	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:131186724G>A	uc003qch.2	-	17	2963	c.2781C>T	c.(2779-2781)ACC>ACT	p.T927T	EPB41L2_uc003qce.1_Silent_p.T305T|EPB41L2_uc003qcf.1_Intron|EPB41L2_uc003qcg.1_Silent_p.T669T|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Silent_p.T774T|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc003qcd.1_Silent_p.T88T	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	927	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CAGATGTGATGGTTTGTGCGG	0.458													19	47					0	0	1	0	0
EPB41L2	2037	broad.mit.edu	37	6	131191231	131191231	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:131191231C>T	uc003qch.2	-	15	2261	c.2079G>A	c.(2077-2079)AAG>AAA	p.K693K	EPB41L2_uc003qce.1_Silent_p.K71K|EPB41L2_uc003qcf.1_Intron|EPB41L2_uc003qcg.1_Intron|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Silent_p.K623K|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc010kfl.1_Silent_p.K623K|EPB41L2_uc003qcd.1_5'Flank|EPB41L2_uc003qcj.1_Silent_p.K90K	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	693					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CTGCCCGCTTCTTCTCCTCCA	0.408													32	40					0	0	1	0	0
EPB41L2	2037	broad.mit.edu	37	6	131220670	131220670	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:131220670C>T	uc003qch.2	-	8	1379	c.1197G>A	c.(1195-1197)AAG>AAA	p.K399K	EPB41L2_uc003qcg.1_Silent_p.K399K|EPB41L2_uc011eby.1_Silent_p.K399K|EPB41L2_uc003qci.2_Silent_p.K399K|EPB41L2_uc010kfk.2_Silent_p.K399K|EPB41L2_uc010kfl.1_Silent_p.K399K	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	399	FERM.				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		TGGAAAGCCTCTTTGCATTTT	0.418													34	63					0	0	1	0	0
ENPP1	5167	broad.mit.edu	37	6	132207802	132207802	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:132207802G>A	uc011ecf.1	+	24	2565	c.2545G>A	c.(2545-2547)GAA>AAA	p.E849K		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	849	Nuclease.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	TTTGCACTGTGAAAACCTAGA	0.378													28	40					0	0	1	0	0
MOXD1	26002	broad.mit.edu	37	6	132693826	132693826	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:132693826G>A	uc003qdf.2	-	4	683	c.584C>T	c.(583-585)CCC>CTC	p.P195L	MOXD1_uc003qde.2_Missense_Mutation_p.P127L	NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	195	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		GTTTGGGATGGGGACCTGTCT	0.373													30	40					0	0	1	0	0
TAAR2	9287	broad.mit.edu	37	6	132938624	132938624	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:132938624G>A	uc003qdl.1	-	2	721	c.721C>T	c.(721-723)CAT>TAT	p.H241Y	TAAR2_uc010kfr.1_Missense_Mutation_p.H196Y	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	241	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		TTGATGGCATGAGCATGTTTT	0.383													33	47					0	0	1	0	0
VNN2	8875	broad.mit.edu	37	6	133078886	133078886	+	Missense_Mutation	SNP	G	A	A	rs139348170	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:133078886G>A	uc003qdt.2	-	1	148	c.137C>T	c.(136-138)TCT>TTT	p.S46F	VNN2_uc003qds.2_5'UTR|VNN2_uc010kgb.2_Missense_Mutation_p.S46F|VNN2_uc003qdv.2_5'UTR	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	46	CN hydrolase.				cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		ATCCTCCTGAGAAACTGGTGT	0.418													35	74					0	0	1	0	0
EYA4	2070	broad.mit.edu	37	6	133789762	133789762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:133789762C>T	uc003qec.3	+	11	1321	c.863C>T	c.(862-864)TCA>TTA	p.S288L	EYA4_uc011ecq.1_Missense_Mutation_p.S234L|EYA4_uc011ecr.1_Missense_Mutation_p.S234L|EYA4_uc003qed.3_Missense_Mutation_p.S288L|EYA4_uc003qee.3_Missense_Mutation_p.S265L|EYA4_uc011ecs.1_Missense_Mutation_p.S288L|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	288					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TATTCAGCATCAACGTATGGA	0.413													47	68					0	0	1	0	0
EYA4	2070	broad.mit.edu	37	6	133846313	133846313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:133846313G>A	uc003qec.3	+	19	2218	c.1760G>A	c.(1759-1761)CGA>CAA	p.R587Q	EYA4_uc011ecq.1_Intron|EYA4_uc011ecr.1_Intron|EYA4_uc003qed.3_Intron|EYA4_uc003qee.3_Missense_Mutation_p.R564Q|EYA4_uc011ecs.1_Missense_Mutation_p.R593Q|uc003qeg.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	587					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TGCTTTGAACGAATAATGCAA	0.408													38	48					0	0	1	0	0
SLC2A12	154091	broad.mit.edu	37	6	134349893	134349893	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:134349893G>A	uc003qem.1	-	2	1241	c.1070C>T	c.(1069-1071)TCG>TTG	p.S357L		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	357	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		GGTCACCAACGAAGCTGCCAT	0.493													23	50					0	0	1	0	0
SLC2A12	154091	broad.mit.edu	37	6	134350251	134350251	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:134350251C>T	uc003qem.1	-	2	883	c.712G>A	c.(712-714)GGA>AGA	p.G238R		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	238	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		CTTAACCTTCCAAGAACCTTG	0.443													33	42					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136582444	136582444	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:136582444C>T	uc003qgx.1	-	12	2969	c.2716G>A	c.(2716-2718)GAA>AAA	p.E906K	BCLAF1_uc011edb.1_Missense_Mutation_p.E185K|BCLAF1_uc003qgw.1_Missense_Mutation_p.E733K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E855K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E904K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	906					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCATTATTTTCCATGGTCTCT	0.378													26	197					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136582507	136582507	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:136582507G>A	uc003qgx.1	-	12	2906	c.2653C>T	c.(2653-2655)CCT>TCT	p.P885S	BCLAF1_uc011edb.1_Missense_Mutation_p.P164S|BCLAF1_uc003qgw.1_Missense_Mutation_p.P712S|BCLAF1_uc003qgy.1_Missense_Mutation_p.P834S|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.P883S	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	885					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GTCCATTTAGGACTGCTACCT	0.433													58	293					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136582564	136582564	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:136582564G>A	uc003qgx.1	-	12	2849	c.2596C>T	c.(2596-2598)CGT>TGT	p.R866C	BCLAF1_uc011edb.1_Missense_Mutation_p.R145C|BCLAF1_uc003qgw.1_Missense_Mutation_p.R693C|BCLAF1_uc003qgy.1_Missense_Mutation_p.R815C|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.R864C	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	866					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		AAAGTACCACGACCTCTTCCT	0.408													55	310					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136596793	136596793	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:136596793G>A	uc003qgx.1	-	6	1982	c.1729C>T	c.(1729-1731)CAT>TAT	p.H577Y	BCLAF1_uc003qgw.1_Missense_Mutation_p.H404Y|BCLAF1_uc003qgy.1_Missense_Mutation_p.H575Y|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.H575Y	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	577					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TTGACAGAATGGACAAGTGTA	0.398													17	189					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597061	136597061	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:136597061C>T	uc003qgx.1	-	5	1855	c.1602G>A	c.(1600-1602)AGG>AGA	p.R534R	BCLAF1_uc003qgw.1_Silent_p.R361R|BCLAF1_uc003qgy.1_Silent_p.R532R|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Silent_p.R532R	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	534					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCATTTTGATCCTAAGTGGGC	0.433													45	264					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597445	136597445	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:136597445C>T	uc003qgx.1	-	5	1471	c.1218G>A	c.(1216-1218)GAG>GAA	p.E406E	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Silent_p.E404E|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Silent_p.E404E	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	406					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GTCTATAATCCTCTGTCTCCT	0.428													32	522					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597494	136597494	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:136597494C>T	uc003qgx.1	-	5	1422	c.1169G>A	c.(1168-1170)GGA>GAA	p.G390E	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Missense_Mutation_p.G388E|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.G388E	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	390					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		CTTTTGTTTTCCAGACTCTTT	0.423													56	560					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599818	136599818	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:136599818C>T	uc003qgx.1	-	4	454	c.201G>A	c.(199-201)ATG>ATA	p.M67I	BCLAF1_uc003qgw.1_Missense_Mutation_p.M67I|BCLAF1_uc003qgy.1_Missense_Mutation_p.M65I|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.M65I	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	67					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		AAGGTCGTCTCATTCCTCTAT	0.428													9	87					0	0	1	0	0
IL22RA2	116379	broad.mit.edu	37	6	137466765	137466765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:137466765G>A	uc003qhl.2	-	7	1089	c.788C>T	c.(787-789)CCA>CTA	p.P263L	IL22RA2_uc003qhm.2_Missense_Mutation_p.P231L|IL22RA2_uc003qhn.2_3'UTR	NM_052962	NP_443194	Q969J5	I22R2_HUMAN	interleukin 22-binding protein isoform 1	263	Fibronectin type-III 3.				regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	interleukin-22 receptor activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000313)|OV - Ovarian serous cystadenocarcinoma(155;0.00407)		CACAAGTCATGGAATTTCCAC	0.403													21	24					0	0	1	0	0
OLIG3	167826	broad.mit.edu	37	6	137815305	137815305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:137815305C>T	uc003qhp.1	-	1	227	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_175747	NP_786923	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	1					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		AATCAGAATTCATTTTATTAC	0.398													28	39					0	0	1	0	0
TNFAIP3	7128	broad.mit.edu	37	6	138202199	138202199	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:138202199C>T	uc003qhr.2	+	9	2182	c.2116C>T	c.(2116-2118)CGA>TGA	p.R706*	TNFAIP3_uc003qhs.2_Nonsense_Mutation_p.R706*	NM_006290	NP_006281	P21580	TNAP3_HUMAN	tumor necrosis factor, alpha-induced protein 3	706	Interaction with NAF1 (By similarity).				anti-apoptosis|apoptosis|B-1 B cell homeostasis|negative regulation of B cell activation|negative regulation of bone resorption|negative regulation of CD40 signaling pathway|negative regulation of endothelial cell apoptosis|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of inflammatory response|negative regulation of interleukin-2 production|negative regulation of interleukin-6 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of osteoclast proliferation|negative regulation of protein ubiquitination|negative regulation of smooth muscle cell proliferation|negative regulation of toll-like receptor 2 signaling pathway|negative regulation of toll-like receptor 3 signaling pathway|negative regulation of tumor necrosis factor production|negative regulation of type I interferon production|positive regulation of protein catabolic process|protein K48-linked ubiquitination|protein K63-linked deubiquitination|protein oligomerization|regulation of defense response to virus by host|regulation of germinal center formation|regulation of vascular wound healing|tolerance induction to lipopolysaccharide	centrosome|cytosol|nucleus	caspase inhibitor activity|DNA binding|protease binding|protein self-association|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-protein ligase activity|ubiquitin-specific protease activity|zinc ion binding	p.0?(22)		haematopoietic_and_lymphoid_tissue(133)|lung(3)|ovary(1)	137	Breast(32;0.135)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000849)|OV - Ovarian serous cystadenocarcinoma(155;0.00468)		AGATGTGCCTCGAACCACACA	0.542			D|N|F		marginal zone B-cell lymphomas|Hodgkin's lymphoma|primary mediastinal B cell lymphoma								18	55					0	0	1	0	0
ECT2L	345930	broad.mit.edu	37	6	139175174	139175174	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:139175174G>A	uc003qif.1	+	8	1184	c.1081G>A	c.(1081-1083)GGT>AGT	p.G361S	ECT2L_uc011edq.1_Missense_Mutation_p.G292S	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	361					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						CTATAAAATTGGTGTTAAAAA	0.363													50	82					0	0	1	0	0
TXLNB	167838	broad.mit.edu	37	6	139564197	139564197	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:139564197G>A	uc011eds.1	-	10	1686	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	507						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		GAATTATCATGAAGGCTGTGG	0.512													50	122					0	0	1	0	0
GPR126	57211	broad.mit.edu	37	6	142691444	142691444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:142691444G>A	uc010khc.2	+	4	994	c.583G>A	c.(583-585)GAA>AAA	p.E195K	GPR126_uc010khd.2_Missense_Mutation_p.E195K|GPR126_uc010khe.2_Missense_Mutation_p.E195K|GPR126_uc010khf.2_Missense_Mutation_p.E195K|GPR126_uc003qix.2_Missense_Mutation_p.E195K	NM_020455	NP_065188	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126 alpha 1	195	Pentaxin.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		AGTTGGCCATGAAGACAGTGA	0.438													14	24					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143080913	143080913	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:143080913G>A	uc003qjd.2	-	9	7255	c.6512C>T	c.(6511-6513)CCT>CTT	p.P2171L		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	2171					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		ACTTACAGGAGGCCCCAATAC	0.433													20	65					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143093026	143093026	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:143093026G>A	uc003qjd.2	-	5	3593	c.2850C>T	c.(2848-2850)TCC>TCT	p.S950S		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	950	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		ACTCCCCTGAGGAGTGCTCCA	0.557													34	52					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143093720	143093720	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:143093720G>A	uc003qjd.2	-	5	2899	c.2156C>T	c.(2155-2157)ACT>ATT	p.T719I		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	719					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		GCCCACAGGAGTGCTTACAAT	0.507													24	59					0	0	1	0	0
PHACTR2	9749	broad.mit.edu	37	6	144128271	144128271	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:144128271G>A	uc003qjq.3	+	12	2019	c.1889_splice	c.e12+1	p.R630_splice	PHACTR2_uc010khh.2_Splice_Site_p.R550_splice|PHACTR2_uc010khi.2_Splice_Site_p.R641_splice|PHACTR2_uc003qjr.3_Splice_Site_p.R561_splice	NM_014721	NP_055536	O75167	PHAR2_HUMAN	phosphatase and actin regulator 2 isoform 3								actin binding|protein phosphatase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(155;1.58e-05)|GBM - Glioblastoma multiforme(68;0.0386)		AGTTTACAAGGTAGGTGACAA	0.284													28	27					0	0	1	0	0
UTRN	7402	broad.mit.edu	37	6	144769802	144769802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:144769802C>T	uc003qkt.2	+	16	2061	c.1969C>T	c.(1969-1971)CGT>TGT	p.R657C	UTRN_uc010khq.1_Missense_Mutation_p.R657C	NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	657	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GGAGACTGTTCGTGTAAGAGA	0.423													18	113					0	0	1	0	0
UTRN	7402	broad.mit.edu	37	6	144869848	144869848	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:144869848C>T	uc003qkt.2	+	46	6760	c.6668C>T	c.(6667-6669)TCG>TTG	p.S2223L		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	2223					muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		CATCGTACTTCGGAAATTTCA	0.398													21	31					0	0	1	0	0
SHPRH	257218	broad.mit.edu	37	6	146256503	146256503	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:146256503G>C	uc003qlf.2	-	12	3043	c.2644C>G	c.(2644-2646)CGG>GGG	p.R882G	SHPRH_uc003qld.2_Missense_Mutation_p.R882G|SHPRH_uc003qle.2_Missense_Mutation_p.R882G|SHPRH_uc003qlg.1_Missense_Mutation_p.R438G|SHPRH_uc003qlj.1_Missense_Mutation_p.R771G|SHPRH_uc003qlh.2_5'Flank	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	882					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		CAGTAAGGCCGATAGAGAAGT	0.393													27	29					0	0	1	0	0
GRM1	2911	broad.mit.edu	37	6	146350703	146350703	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:146350703C>T	uc010khw.1	+	2	520	c.50C>T	c.(49-51)TCC>TTC	p.S17F	GRM1_uc010khu.1_Missense_Mutation_p.S17F|GRM1_uc010khv.1_Missense_Mutation_p.S17F|GRM1_uc003qll.2_Missense_Mutation_p.S17F|GRM1_uc011edz.1_Missense_Mutation_p.S17F|GRM1_uc011eea.1_Missense_Mutation_p.S17F	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	17					synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TTGGAGGTGTCCCTTCTCCCC	0.602													99	114					0	0	1	0	0
GRM1	2911	broad.mit.edu	37	6	146673593	146673593	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:146673593A>T	uc010khw.1	+	5	1864	c.1394A>T	c.(1393-1395)GAG>GTG	p.E465V	GRM1_uc010khv.1_Missense_Mutation_p.E465V|GRM1_uc003qll.2_Missense_Mutation_p.E465V|GRM1_uc011edz.1_Missense_Mutation_p.E465V|GRM1_uc011eea.1_Missense_Mutation_p.E465V	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	465	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GTATCTGGAGAGGAGGTGTGG	0.522													45	126					0	0	1	0	0
GRM1	2911	broad.mit.edu	37	6	146720077	146720077	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:146720077C>T	uc010khw.1	+	8	2372	c.1902C>T	c.(1900-1902)ATC>ATT	p.I634I	GRM1_uc010khv.1_Silent_p.I634I|GRM1_uc003qll.2_Silent_p.I634I|GRM1_uc011edz.1_Silent_p.I634I|GRM1_uc011eea.1_Silent_p.I634I	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	634	Helical; Name=2; (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GCTACATCATCCTAGCTGGCA	0.522													81	97					0	0	1	0	0
STXBP5	134957	broad.mit.edu	37	6	147685156	147685156	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:147685156C>T	uc003qlz.2	+	25	3096	c.2935C>T	c.(2935-2937)CTG>TTG	p.L979L	STXBP5_uc010khz.1_Silent_p.L943L|STXBP5_uc003qlx.2_RNA|STXBP5_uc003qly.2_Silent_p.L634L	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	979	WD 13.				exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		TTTAAGACCTCTGTTGGATGT	0.358													74	107					0	0	1	0	0
SASH1	23328	broad.mit.edu	37	6	148855070	148855070	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:148855070C>T	uc003qme.1	+	15	2373	c.1898C>T	c.(1897-1899)CCC>CTC	p.P633L	SASH1_uc011eeb.1_Missense_Mutation_p.P394L|SASH1_uc003qmf.1_Missense_Mutation_p.P43L	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	633	SAM 1.						protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		GGACGACCACCCCAGCCCAAG	0.527													12	43					0	0	1	0	0
TAB2	23118	broad.mit.edu	37	6	149720247	149720247	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:149720247T>C	uc003qmj.2	+	6	2044	c.1866T>C	c.(1864-1866)CAT>CAC	p.H622H	TAB2_uc011eec.1_Silent_p.H590H|TAB2_uc003qmk.3_RNA|SUMO4_uc003qml.2_5'Flank	NM_015093	NP_055908	Q9NYJ8	TAB2_HUMAN	mitogen-activated protein kinase kinase kinase 7	622					activation of MAPK activity|heart development|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	K63-linked polyubiquitin binding|zinc ion binding				0						CAGGACCACATTTTAACCCCA	0.303													15	22					0	0	1	0	0
ULBP2	80328	broad.mit.edu	37	6	150266593	150266593	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:150266593G>A	uc003qno.2	+	2	307	c.234G>A	c.(232-234)GGG>GGA	p.G78G	ULBP2_uc011eeh.1_Silent_p.G78G|ULBP2_uc010kij.2_Silent_p.G78G	NM_025217	NP_079493	Q9BZM5	N2DL2_HUMAN	UL16 binding protein 2 precursor	78	MHC class I alpha-1 like.				antigen processing and presentation|immune response|natural killer cell activation|regulation of immune response	anchored to membrane|cell surface|extracellular space|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		GTCCCCTGGGGAAGAAACTAA	0.512													77	156					0	0	1	0	0
AKAP12	9590	broad.mit.edu	37	6	151671950	151671950	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:151671950G>A	uc011eep.1	+	4	2664	c.2424G>A	c.(2422-2424)AAG>AAA	p.K808K	AKAP12_uc003qoe.2_Silent_p.K808K|AKAP12_uc003qof.2_Silent_p.K710K|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Silent_p.K703K	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	808	AKAP 3.				G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		TCTCAATCAAGAAGTTTATTC	0.498													37	68					0	0	1	0	0
AKAP12	9590	broad.mit.edu	37	6	151672380	151672380	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:151672380G>A	uc011eep.1	+	4	3094	c.2854G>A	c.(2854-2856)GAA>AAA	p.E952K	AKAP12_uc003qoe.2_Missense_Mutation_p.E952K|AKAP12_uc003qof.2_Missense_Mutation_p.E854K|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Missense_Mutation_p.E847K	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	952					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		CACGGTTACTGAACCTCTGCC	0.532													25	72					0	0	1	0	0
C6orf97	80129	broad.mit.edu	37	6	151894528	151894528	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:151894528G>A	uc003qol.2	+	6	1083	c.994G>A	c.(994-996)GCC>ACC	p.A332T		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	332											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		GAAAATCGCAGCCCTCCTTAG	0.502													26	33					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152536101	152536101	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152536101C>T	uc010kiw.2	-	122	22888	c.22286G>A	c.(22285-22287)AGA>AAA	p.R7429K	SYNE1_uc010kiv.2_Missense_Mutation_p.R1953K|SYNE1_uc003qos.3_Missense_Mutation_p.R1953K|SYNE1_uc003qot.3_Missense_Mutation_p.R7358K|SYNE1_uc003qou.3_Missense_Mutation_p.R7429K|SYNE1_uc003qor.3_Missense_Mutation_p.R329K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7429	Spectrin 24.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATTCTGCATTCTTTTGATTTC	0.403										HNSCC(10;0.0054)			66	80					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152557374	152557374	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152557374C>T	uc010kiw.2	-	110	20866	c.20264G>A	c.(20263-20265)CGA>CAA	p.R6755Q	SYNE1_uc010kiv.2_Missense_Mutation_p.R1279Q|SYNE1_uc003qos.3_Missense_Mutation_p.R1279Q|SYNE1_uc003qot.3_Missense_Mutation_p.R6684Q|SYNE1_uc003qou.3_Missense_Mutation_p.R6755Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6755	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TATCAGAAGTCGTTTCCCATC	0.338										HNSCC(10;0.0054)			30	32					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152583269	152583269	+	Silent	SNP	G	A	A	rs138173087		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152583269G>A	uc010kiw.2	-	101	19472	c.18870C>T	c.(18868-18870)TCC>TCT	p.S6290S	SYNE1_uc010kiv.2_Silent_p.S814S|SYNE1_uc003qos.3_Silent_p.S814S|SYNE1_uc003qot.3_Silent_p.S6219S|SYNE1_uc003qou.3_Silent_p.S6290S	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6290	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GGTCTTCAGCGGATGATTTCT	0.393										HNSCC(10;0.0054)			23	41					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152605214	152605214	+	Missense_Mutation	SNP	C	T	T	rs147615757		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152605214C>T	uc010kiw.2	-	96	18708	c.18106G>A	c.(18106-18108)GAC>AAC	p.D6036N	SYNE1_uc010kiv.2_Missense_Mutation_p.D560N|SYNE1_uc003qos.3_Missense_Mutation_p.D560N|SYNE1_uc003qot.3_Missense_Mutation_p.D5965N|SYNE1_uc003qou.3_Missense_Mutation_p.D6036N|SYNE1_uc010kiy.1_Missense_Mutation_p.D215N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6036	Spectrin 20.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCCGCAGGGTCGGCCTCACAA	0.562										HNSCC(10;0.0054)			20	30					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152647133	152647133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152647133G>A	uc010kiw.2	-	80	16000	c.15398C>T	c.(15397-15399)TCG>TTG	p.S5133L	SYNE1_uc003qot.3_Missense_Mutation_p.S5062L|SYNE1_uc003qou.3_Missense_Mutation_p.S5133L|SYNE1_uc010kiz.2_Missense_Mutation_p.S888L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5133	Spectrin 16.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATGACTAGACGAAGTCTTCAA	0.348										HNSCC(10;0.0054)			22	28					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152708338	152708338	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152708338G>A	uc010kiw.2	-	54	8958	c.8356C>T	c.(8356-8358)CAC>TAC	p.H2786Y	SYNE1_uc003qot.3_Missense_Mutation_p.H2793Y|SYNE1_uc003qou.3_Missense_Mutation_p.H2786Y|SYNE1_uc010kjb.1_Missense_Mutation_p.H2769Y	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2786	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCTCTCGTGTGATCTTCTGCC	0.493										HNSCC(10;0.0054)			47	76					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152737732	152737732	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152737732G>A	uc010kiw.2	-	41	6442	c.5840C>T	c.(5839-5841)TCC>TTC	p.S1947F	SYNE1_uc003qot.3_Missense_Mutation_p.S1954F|SYNE1_uc003qou.3_Missense_Mutation_p.S1947F|SYNE1_uc010kjb.1_Missense_Mutation_p.S1930F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1947	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GGCTCTGCAGGAAGTCCTTTG	0.502										HNSCC(10;0.0054)			37	67					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152737851	152737851	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152737851C>T	uc010kiw.2	-	41	6323	c.5721G>A	c.(5719-5721)AAG>AAA	p.K1907K	SYNE1_uc003qot.3_Silent_p.K1914K|SYNE1_uc003qou.3_Silent_p.K1907K|SYNE1_uc010kjb.1_Silent_p.K1890K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1907	Cytoplasmic (Potential).|Potential.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CATTGAGGTCCTTTTCTATCA	0.463										HNSCC(10;0.0054)			25	30					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152768620	152768620	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152768620G>A	uc010kiw.2	-	29	4244	c.3642C>T	c.(3640-3642)TTC>TTT	p.F1214F	SYNE1_uc003qot.3_Silent_p.F1221F|SYNE1_uc003qou.3_Silent_p.F1214F|SYNE1_uc010kjb.1_Silent_p.F1197F|SYNE1_uc003qow.2_Silent_p.F509F|SYNE1_uc003qox.1_Silent_p.F730F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1214	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAAGAGCCTTGAAAGAGCTGG	0.453										HNSCC(10;0.0054)			21	22					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152782813	152782813	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152782813G>A	uc010kiw.2	-	21	2915	c.2313C>T	c.(2311-2313)CAC>CAT	p.H771H	SYNE1_uc003qot.3_Silent_p.H778H|SYNE1_uc003qou.3_Silent_p.H771H|SYNE1_uc010kjb.1_Silent_p.H754H|SYNE1_uc003qow.2_Silent_p.H66H|SYNE1_uc003qox.1_Silent_p.H287H|SYNE1_uc003qoz.2_Silent_p.H203H|SYNE1_uc003qoy.2_Silent_p.H338H	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	771	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGGTAATGAGGTGTGCTGTCT	0.413										HNSCC(10;0.0054)			46	61					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152786560	152786560	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152786560C>T	uc010kiw.2	-	18	2367	c.1765G>A	c.(1765-1767)GAA>AAA	p.E589K	SYNE1_uc003qot.3_Missense_Mutation_p.E596K|SYNE1_uc003qou.3_Missense_Mutation_p.E589K|SYNE1_uc010kjb.1_Missense_Mutation_p.E572K|SYNE1_uc003qpa.1_Missense_Mutation_p.E589K|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Missense_Mutation_p.E105K|SYNE1_uc003qoz.2_Missense_Mutation_p.E21K|SYNE1_uc003qoy.2_Missense_Mutation_p.E156K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	589	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCGGTGGTTTCATTCATGAAT	0.398										HNSCC(10;0.0054)			19	19					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152787119	152787119	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152787119G>A	uc010kiw.2	-	17	2329	c.1727C>T	c.(1726-1728)TCA>TTA	p.S576L	SYNE1_uc003qot.3_Missense_Mutation_p.S583L|SYNE1_uc003qou.3_Missense_Mutation_p.S576L|SYNE1_uc010kjb.1_Missense_Mutation_p.S559L|SYNE1_uc003qpa.1_Missense_Mutation_p.S576L|SYNE1_uc003qox.1_Missense_Mutation_p.S92L|SYNE1_uc003qoz.2_Missense_Mutation_p.S8L|SYNE1_uc003qoy.2_Missense_Mutation_p.S143L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	576	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGTTTTACCTGAACCATCTGC	0.373										HNSCC(10;0.0054)			22	27					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152831474	152831474	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152831474G>A	uc010kiw.2	-	8	1037	c.435C>T	c.(433-435)CTC>CTT	p.L145L	SYNE1_uc003qot.3_Silent_p.L152L|SYNE1_uc003qou.3_Silent_p.L145L|SYNE1_uc010kjb.1_Silent_p.L145L|SYNE1_uc003qpa.1_Silent_p.L145L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	145	Actin-binding.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ACAAAGACTGGAGCTGGGGCA	0.458										HNSCC(10;0.0054)			22	22					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152847233	152847233	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152847233G>A	uc010kiw.2	-	5	809	c.207C>T	c.(205-207)GTC>GTT	p.V69V	SYNE1_uc003qot.3_Silent_p.V69V|SYNE1_uc003qou.3_Silent_p.V69V|SYNE1_uc010kjb.1_Silent_p.V69V|SYNE1_uc003qpa.1_Silent_p.V69V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	69	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCCCAGACAGGACCTCCAGAA	0.413										HNSCC(10;0.0054)			6	78					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152861154	152861154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:152861154C>T	uc010kiw.2	-	4	672	c.70G>A	c.(70-72)GAG>AAG	p.E24K	SYNE1_uc003qot.3_Missense_Mutation_p.E24K|SYNE1_uc003qou.3_Missense_Mutation_p.E24K|SYNE1_uc010kjb.1_Missense_Mutation_p.E24K|SYNE1_uc003qpa.1_Missense_Mutation_p.E24K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	24	Actin-binding.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATCTCTTGCTCATCTAGAAGG	0.343										HNSCC(10;0.0054)			25	48					0	0	1	0	0
MYCT1	80177	broad.mit.edu	37	6	153043320	153043320	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:153043320C>T	uc003qpd.3	+	2	648	c.640C>T	c.(640-642)CGA>TGA	p.R214*	MYCT1_uc010kjc.1_Nonsense_Mutation_p.R166*|MYCT1_uc003qpc.3_Nonsense_Mutation_p.R214*	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	214						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		TAACAGTCTTCGAGTGGGCCT	0.512													36	45					0	0	1	0	0
VIP	7432	broad.mit.edu	37	6	153078241	153078241	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:153078241G>A	uc003qpe.2	+	6	650	c.478G>A	c.(478-480)GAA>AAA	p.E160K	VIP_uc003qpf.2_Missense_Mutation_p.E159K|VIP_uc010kjd.2_Missense_Mutation_p.E158K	NM_003381	NP_003372	P01282	VIP_HUMAN	vasoactive intestinal peptide isoform 1	160					body fluid secretion|G-protein coupled receptor protein signaling pathway|positive regulation of cell proliferation	extracellular region	neuropeptide hormone activity				0		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;4.5e-11)|BRCA - Breast invasive adenocarcinoma(81;0.144)		CAGTGAGGGAGAATCTCCCGA	0.403													12	18					0	0	1	0	0
OPRM1	4988	broad.mit.edu	37	6	154411258	154411258	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:154411258C>T	uc003qpr.2	+	2	825	c.588C>T	c.(586-588)CTC>CTT	p.L196L	OPRM1_uc011efb.1_Silent_p.L244L|OPRM1_uc011efc.1_Silent_p.L115L|OPRM1_uc011efd.1_Silent_p.L96L|OPRM1_uc011efe.1_Silent_p.L289L|OPRM1_uc003qpn.2_Silent_p.L196L|OPRM1_uc003qpo.1_Silent_p.L196L|OPRM1_uc011eff.1_Silent_p.L196L|OPRM1_uc011efg.1_Silent_p.L196L|OPRM1_uc011efh.1_Silent_p.L196L|OPRM1_uc003qpq.1_Silent_p.L196L|OPRM1_uc003qpt.1_Silent_p.L196L|OPRM1_uc011efi.1_Silent_p.L196L|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Silent_p.L96L|OPRM1_uc003qpu.2_Silent_p.L96L	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	196	Helical; Name=4; (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	ACTGGATCCTCTCTTCAGCCA	0.473													46	60					0	0	1	0	0
OPRM1	4988	broad.mit.edu	37	6	154412272	154412272	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:154412272C>T	uc003qpr.2	+	3	1066	c.829C>T	c.(829-831)CTT>TTT	p.L277F	OPRM1_uc011efc.1_Missense_Mutation_p.L196F|OPRM1_uc011efd.1_Missense_Mutation_p.L177F|OPRM1_uc011efe.1_Missense_Mutation_p.L370F|OPRM1_uc003qpn.2_Missense_Mutation_p.L277F|OPRM1_uc003qpo.1_Missense_Mutation_p.L277F|OPRM1_uc011eff.1_Missense_Mutation_p.L277F|OPRM1_uc011efg.1_Missense_Mutation_p.L277F|OPRM1_uc011efh.1_Missense_Mutation_p.L277F|OPRM1_uc003qpq.1_Missense_Mutation_p.L277F|OPRM1_uc003qpt.1_Missense_Mutation_p.L277F|OPRM1_uc011efi.1_Missense_Mutation_p.L277F|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Missense_Mutation_p.L177F|OPRM1_uc003qpu.2_Missense_Mutation_p.L177F	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	277	Cytoplasmic (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	GGACAGGAATCTTCGAAGGAT	0.488													36	45					0	0	1	0	0
IPCEF1	26034	broad.mit.edu	37	6	154533920	154533920	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:154533920G>A	uc003qpx.2	-	9	674	c.518C>T	c.(517-519)TCC>TTC	p.S173F	OPRM1_uc003qpt.1_Intron|IPCEF1_uc003qpv.2_Missense_Mutation_p.S44F|IPCEF1_uc003qpw.2_Missense_Mutation_p.S174F|IPCEF1_uc010kjh.2_Missense_Mutation_p.S174F	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	173					response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						CTGAGTCTGGGAAGCGTGAGG	0.413													15	28					0	0	1	0	0
CNKSR3	154043	broad.mit.edu	37	6	154727673	154727673	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:154727673G>A	uc003qpy.2	-	13	1988	c.1483C>T	c.(1483-1485)CGG>TGG	p.R495W		NM_173515	NP_775786	Q6P9H4	CNKR3_HUMAN	CNKSR family member 3	495	DUF1170.				negative regulation of ERK1 and ERK2 cascade|negative regulation of peptidyl-serine phosphorylation|positive regulation of sodium ion transport	cytoplasm|membrane				ovary(2)|breast(1)|skin(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;5.03e-11)|BRCA - Breast invasive adenocarcinoma(81;0.00627)		TCCGCACCCCGGACCAGATGC	0.557													42	38					0	0	1	0	0
RBM16	22828	broad.mit.edu	37	6	155154119	155154119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155154119C>T	uc003qqa.2	+	21	3638	c.3406C>T	c.(3406-3408)CCT>TCT	p.P1136S	TIAM2_uc003qqb.2_5'UTR|RBM16_uc011efj.1_Missense_Mutation_p.P1202S|RBM16_uc011efk.1_Missense_Mutation_p.P1181S|RBM16_uc003qpz.2_Missense_Mutation_p.P1136S|RBM16_uc010kji.2_Intron	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	1136	Arg-rich.				mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		TAGAAGTGGTCCTTGGAACCG	0.458													28	52					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155450443	155450443	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155450443C>T	uc003qqb.2	+	6	1359	c.86C>T	c.(85-87)TCC>TTC	p.S29F	TIAM2_uc003qqe.2_Missense_Mutation_p.S29F	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	29					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		ATTCCTTGCTCCCTGAAAATA	0.448													18	52					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155450702	155450702	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155450702C>T	uc003qqb.2	+	6	1618	c.345C>T	c.(343-345)GGC>GGT	p.G115G	TIAM2_uc003qqe.2_Silent_p.G115G	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	115					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		CTGAGAATGGCTTCCACTCTG	0.542													17	19					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155450803	155450803	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155450803C>T	uc003qqb.2	+	6	1719	c.446C>T	c.(445-447)TCC>TTC	p.S149F	TIAM2_uc003qqe.2_Missense_Mutation_p.S149F	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	149					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGCATTGCCTCCACCCCACCG	0.572													15	25					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155450997	155450997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155450997G>A	uc003qqb.2	+	6	1913	c.640G>A	c.(640-642)GCC>ACC	p.A214T	TIAM2_uc003qqe.2_Missense_Mutation_p.A214T	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	214					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		TGTGCCTGAAGCCAGGAGGGG	0.637													24	26					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155451141	155451141	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155451141G>A	uc003qqb.2	+	6	2057	c.784G>A	c.(784-786)GAG>AAG	p.E262K	TIAM2_uc003qqe.2_Missense_Mutation_p.E262K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	262					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGAGCTGAGCGAGGCTGAGGG	0.617													34	41					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155458470	155458470	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155458470G>A	uc003qqb.2	+	7	2627	c.1354G>A	c.(1354-1356)GAT>AAT	p.D452N	TIAM2_uc003qqe.2_Missense_Mutation_p.D452N|TIAM2_uc010kjj.2_5'UTR	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	452					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GATTGGCAGCGATCCCCTCCG	0.502													53	50					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155485641	155485641	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155485641G>A	uc003qqb.2	+	10	3394	c.2121G>A	c.(2119-2121)CCG>CCA	p.P707P	TIAM2_uc003qqe.2_Silent_p.P707P|TIAM2_uc010kjj.2_Silent_p.P240P|TIAM2_uc003qqf.2_Silent_p.P59P|TIAM2_uc011efl.1_Silent_p.P19P|TIAM2_uc003qqg.2_Silent_p.P19P	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	707					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GGGAGTTACCGAACCCAAAGA	0.542													62	88					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155498001	155498001	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155498001G>A	uc003qqb.2	+	12	3686	c.2413G>A	c.(2413-2415)GAC>AAC	p.D805N	TIAM2_uc003qqe.2_Missense_Mutation_p.D805N|TIAM2_uc010kjj.2_Missense_Mutation_p.D338N|TIAM2_uc003qqf.2_Missense_Mutation_p.D181N|TIAM2_uc011efl.1_Missense_Mutation_p.D141N|TIAM2_uc003qqg.2_Missense_Mutation_p.D117N	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	805					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		TGTTCCCCGAGACAATGCATG	0.403													57	71					0	0	1	0	0
NOX3	50508	broad.mit.edu	37	6	155757553	155757553	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155757553G>A	uc003qqm.2	-	7	900	c.797C>T	c.(796-798)TCG>TTG	p.S266L		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	266	Extracellular (Potential).|Ferric oxidoreductase.						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		CATTCTTACCGAGGGTTCCTT	0.438													32	65					0	0	1	0	0
NOX3	50508	broad.mit.edu	37	6	155757560	155757560	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155757560C>T	uc003qqm.2	-	7	893	c.790G>A	c.(790-792)GAA>AAA	p.E264K		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	264	Extracellular (Potential).|Ferric oxidoreductase.						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		ACCGAGGGTTCCTTGCCAGAA	0.438													32	62					0	0	1	0	0
NOX3	50508	broad.mit.edu	37	6	155761161	155761161	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:155761161G>A	uc003qqm.2	-	6	700	c.597C>T	c.(595-597)TCC>TCT	p.S199S		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	199	Ferric oxidoreductase.|Cytoplasmic (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		ACAACTCATAGGAGGCCTGTC	0.507													27	38					0	0	1	0	0
ARID1B	57492	broad.mit.edu	37	6	157528825	157528825	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:157528825C>T	uc003qqn.2	+	20	6648	c.6496C>T	c.(6496-6498)CCC>TCC	p.P2166S	ARID1B_uc003qqo.2_Missense_Mutation_p.P2126S|ARID1B_uc003qqp.2_Missense_Mutation_p.P2113S	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	2171					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity	p.P2168fs*6(1)		ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GCACATGCAGCCCCCGCCCCT	0.557													35	52					0	0	1	0	0
C6orf35	729515	broad.mit.edu	37	6	157743827	157743827	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:157743827G>A	uc003sih.3	-	2	362	c.99C>T	c.(97-99)TTC>TTT	p.F33F		NM_018452	NP_060922	Q9NWH2	CF035_HUMAN	hypothetical protein LOC729515	33	Helical; (Potential).					integral to membrane					0						CGGTACCAAGGAAAATTCCAC	0.373													53	67					0	0	1	0	0
SYNJ2	8871	broad.mit.edu	37	6	158490620	158490620	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:158490620C>T	uc003qqx.1	+	14	1930	c.1855C>T	c.(1855-1857)CAT>TAT	p.H619Y	SYNJ2_uc003qqw.1_Missense_Mutation_p.H619Y|SYNJ2_uc003qqy.1_Missense_Mutation_p.H332Y|SYNJ2_uc003qqz.1_Missense_Mutation_p.H236Y|SYNJ2_uc003qra.1_5'Flank	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	619	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		CTCACGCTCTCATAGATACAT	0.453													26	27					0	0	1	0	0
SYNJ2	8871	broad.mit.edu	37	6	158505106	158505106	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:158505106C>T	uc003qqx.1	+	22	3183	c.3108C>T	c.(3106-3108)CTC>CTT	p.L1036L	SYNJ2_uc003qqw.1_Silent_p.L1036L|SYNJ2_uc003qqy.1_Silent_p.L749L|SYNJ2_uc003qqz.1_Silent_p.L653L|SYNJ2_uc003qra.1_Silent_p.L379L|SYNJ2_uc010kjp.1_5'Flank	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1036	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		ACAGTGAACTCGGGGGAGACG	0.517													106	157					0	0	1	0	0
TULP4	56995	broad.mit.edu	37	6	158900900	158900900	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:158900900C>T	uc003qrf.2	+	7	2501	c.1144C>T	c.(1144-1146)CAG>TAG	p.Q382*	TULP4_uc011efo.1_Nonsense_Mutation_p.Q382*|TULP4_uc003qrg.2_Nonsense_Mutation_p.Q382*	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	382	SOCS box.				intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		GCTGCTGTGCCAGCAGGCCAT	0.647													22	31					0	0	1	0	0
SYTL3	94120	broad.mit.edu	37	6	159086542	159086542	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159086542C>T	uc003qrp.2	+	4	470	c.226C>T	c.(226-228)CGG>TGG	p.R76W	SYTL3_uc011efp.1_Missense_Mutation_p.R76W|SYTL3_uc003qro.2_Missense_Mutation_p.R76W|SYTL3_uc003qrq.2_Missense_Mutation_p.R76W|SYTL3_uc003qrr.2_Missense_Mutation_p.R76W|SYTL3_uc003qrs.2_Missense_Mutation_p.R76W|SYTL3_uc011efq.1_5'UTR	NM_001009991	NP_001009991	Q4VX76	SYTL3_HUMAN	synaptotagmin-like 3	76	RabBD.				intracellular protein transport	endomembrane system|membrane	Rab GTPase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.54e-17)|BRCA - Breast invasive adenocarcinoma(81;8.24e-06)		CCTGCTGCACCGGGGCGCCGT	0.662													8	2					0	0	1	0	0
SYTL3	94120	broad.mit.edu	37	6	159166610	159166610	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159166610C>T	uc003qrp.2	+	11	1198	c.954C>T	c.(952-954)TTC>TTT	p.F318F	SYTL3_uc011efp.1_Silent_p.F318F|SYTL3_uc003qro.2_Silent_p.F250F|SYTL3_uc003qrq.2_Silent_p.F250F|SYTL3_uc003qrr.2_Silent_p.F318F|SYTL3_uc003qrs.2_Silent_p.F250F|SYTL3_uc011efq.1_Silent_p.F44F	NM_001009991	NP_001009991	Q4VX76	SYTL3_HUMAN	synaptotagmin-like 3	318	C2 1.				intracellular protein transport	endomembrane system|membrane	Rab GTPase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.54e-17)|BRCA - Breast invasive adenocarcinoma(81;8.24e-06)		ATTATTGCTTCAAAACCCATT	0.358													6	14					0	0	1	0	0
TAGAP	117289	broad.mit.edu	37	6	159462467	159462467	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159462467C>T	uc003qrz.2	-	6	728	c.396G>A	c.(394-396)AAG>AAA	p.K132K	TAGAP_uc011eft.1_Silent_p.K69K|TAGAP_uc003qsa.2_5'UTR|TAGAP_uc003qsb.2_Silent_p.K132K|uc003qsc.2_5'Flank	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	132	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		CCTTCAGCTCCTTACGGGCTT	0.522													24	48					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159618524	159618524	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159618524C>T	uc010kjv.2	+	2	371	c.171C>T	c.(169-171)GTC>GTT	p.V57V	FNDC1_uc010kjw.1_Silent_p.V5V	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	57	Fibronectin type-III 1.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GCCTGAAAGTCACGTGGGACC	0.453													21	95					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159646591	159646591	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159646591G>A	uc010kjv.2	+	8	1109	c.909G>A	c.(907-909)GAG>GAA	p.E303E	FNDC1_uc010kjw.1_Silent_p.E251E	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	303	Fibronectin type-III 3.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GCTATCGAGAGAAGGGGGAAT	0.468													58	91					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159650906	159650906	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159650906C>T	uc010kjv.2	+	10	1440	c.1240C>T	c.(1240-1242)CCT>TCT	p.P414S	FNDC1_uc010kjw.1_Intron	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	414	Fibronectin type-III 4.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CCTCACCTATCCTGGAGACAC	0.507													29	232					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159650951	159650951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159650951G>A	uc010kjv.2	+	10	1485	c.1285G>A	c.(1285-1287)GAA>AAA	p.E429K	FNDC1_uc010kjw.1_Intron	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	429	Fibronectin type-III 4.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GCAGCCTGGGGAACGCTATCT	0.517													108	137					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159654305	159654305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159654305C>T	uc010kjv.2	+	11	2961	c.2761C>T	c.(2761-2763)CGG>TGG	p.R921W	FNDC1_uc010kjw.1_Missense_Mutation_p.R806W	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	921						extracellular region		p.R921Q(1)		large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CAGCCTGCATCGGAAGGAACC	0.602													8	28					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159654376	159654376	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159654376C>T	uc010kjv.2	+	11	3032	c.2832C>T	c.(2830-2832)TCC>TCT	p.S944S	FNDC1_uc010kjw.1_Silent_p.S829S	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	944						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AGTACTCCTCCCTGGCCTCCA	0.617													9	14					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159688919	159688919	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:159688919G>A	uc010kjv.2	+	22	5730	c.5530G>A	c.(5530-5532)GGG>AGG	p.G1844R		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1844						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TGGAAGAACAGGGCCTCAGTC	0.438													5	16					0	0	1	0	0
PNLDC1	154197	broad.mit.edu	37	6	160239672	160239672	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160239672G>A	uc003qsx.1	+	16	1381	c.1210G>A	c.(1210-1212)GGG>AGG	p.G404R	PNLDC1_uc003qsy.1_Missense_Mutation_p.G415R	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	404	Cytoplasmic (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		CATCCGAGCGGGGGTCCCAAA	0.572													6	36					0	0	1	0	0
PNLDC1	154197	broad.mit.edu	37	6	160240299	160240299	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160240299C>T	uc003qsx.1	+	18	1585	c.1414C>T	c.(1414-1416)CTG>TTG	p.L472L	PNLDC1_uc003qsy.1_Silent_p.L483L	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	472	Cytoplasmic (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		GCGGAACATCCTGAAGGAGTA	0.602													17	24					0	0	1	0	0
IGF2R	3482	broad.mit.edu	37	6	160431725	160431725	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160431725C>T	uc003qta.2	+	4	569	c.421C>T	c.(421-423)CCT>TCT	p.P141S		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	141	1.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		ATAGGGAACTCCTGAATTTGT	0.333													21	34					0	0	1	0	0
IGF2R	3482	broad.mit.edu	37	6	160482654	160482654	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160482654C>T	uc003qta.2	+	24	3530	c.3382C>T	c.(3382-3384)CTC>TTC	p.L1128F		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	1128	8.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		TTGCAATCCTCTCCCTTACAT	0.493													47	58					0	0	1	0	0
SLC22A2	6582	broad.mit.edu	37	6	160679494	160679494	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160679494C>T	uc003qtf.2	-	1	466	c.296G>A	c.(295-297)AGC>AAC	p.S99N	SLC22A2_uc003qte.1_Missense_Mutation_p.S99N|SLC22A2_uc003qth.1_Missense_Mutation_p.S99N	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	99	Extracellular (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		GTCGAAGGTGCTCTGGTTCCA	0.677													32	39					0	0	1	0	0
SLC22A3	6581	broad.mit.edu	37	6	160857870	160857870	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160857870C>T	uc003qti.2	+	6	1061	c.1034C>T	c.(1033-1035)CCC>CTC	p.P345L	SLC22A3_uc011efx.1_Intron	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	345						integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		GTGAGAACTCCCCAAATGAGG	0.343													26	25					0	0	1	0	0
LPAL2	80350	broad.mit.edu	37	6	160905242	160905242	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160905242G>A	uc003qtj.2	-	6		c.886C>T			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		GCCTTCCACAGGATCTGGATT	0.512													33	43					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	160952867	160952867	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160952867C>T	uc003qtl.2	-	40	6137	c.6017G>A	c.(6016-6018)GGA>GAA	p.G2006E		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4514	Peptidase S1.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	AGAAGTGACTCCTTGTAAAAT	0.463													33	45					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	160961164	160961164	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160961164C>T	uc003qtl.2	-	37	5766	c.5646G>A	c.(5644-5646)GTG>GTA	p.V1882V		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4390	Peptidase S1.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ATTCGAGGTTCACTTCTTGGT	0.473													39	43					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	160977153	160977153	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:160977153C>T	uc003qtl.2	-	31	4997	c.4877G>A	c.(4876-4878)GGC>GAC	p.G1626D		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4134	Kringle 37.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GGAGAATGTGCCTCGATAACT	0.483													27	149					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	161007493	161007493	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:161007493G>A	uc003qtl.2	-	26	4237	c.4117C>T	c.(4117-4119)CCT>TCT	p.P1373S		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3881	Kringle 34.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TCTTCAGAAGGAAGCTCTGTG	0.478													36	45					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	161010697	161010697	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:161010697C>T	uc003qtl.2	-	25	3955	c.3835G>A	c.(3835-3837)GGA>AGA	p.G1279R		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3787	Kringle 34.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TAACTCTGTCCATCACCATGG	0.473													25	57					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	161015120	161015120	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:161015120C>T	uc003qtl.2	-	23	3619	c.3499G>A	c.(3499-3501)GAT>AAT	p.D1167N		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3675	Kringle 33.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGGTAGCAATCCTGGACCCCG	0.478													43	69					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161123349	161123349	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:161123349G>A	uc003qtm.3	+	1	76	c.13G>A	c.(13-15)GAA>AAA	p.E5K		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	5					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GGAACATAAGGAAGTGGTTCT	0.363													43	65					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161132108	161132108	+	Splice_Site	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:161132108G>C	uc003qtm.3	+	4	356	c.293_splice	c.e4-1	p.V98_splice		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen						extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	CTTCCCTTCAGTGTATCTCTC	0.453													20	24					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161139349	161139349	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:161139349C>T	uc003qtm.3	+	8	874	c.811C>T	c.(811-813)CCC>TCC	p.P271S		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	271					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	ATCTTCTGGTCCCACCTACCA	0.398													43	55					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161152234	161152234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:161152234C>T	uc003qtm.3	+	11	1471	c.1408C>T	c.(1408-1410)CTT>TTT	p.L470F		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	470					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TGTTGTCCTGCTTCCAGATGT	0.498													11	54					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161162403	161162403	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:161162403C>T	uc003qtm.3	+	17	2142	c.2079C>T	c.(2077-2079)GTC>GTT	p.V693V		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	693	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	ATTATGTGGTCGCTGACCGGA	0.473													24	39					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161173184	161173184	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:161173184C>T	uc003qtm.3	+	18	2226	c.2163C>T	c.(2161-2163)CTC>CTT	p.L721L		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	721	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AAGCCCAGCTCCCTGTGATTG	0.468													17	39					0	0	1	0	0
PARK2	5071	broad.mit.edu	37	6	162683579	162683579	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:162683579G>A	uc003qtx.3	-	3	524	c.390C>T	c.(388-390)GAC>GAT	p.D130D	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_5'UTR|PARK2_uc003qty.3_Silent_p.D130D|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Silent_p.D130D	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	130					aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		CTGGTGGTGAGTCCTTCCTGC	0.532													27	37					0	0	1	0	0
PDE10A	10846	broad.mit.edu	37	6	165749672	165749672	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:165749672G>A	uc003qun.2	-	22	2418	c.2177C>T	c.(2176-2178)CCC>CTC	p.P726L	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.P656L|PDE10A_uc003quo.2_Missense_Mutation_p.P736L	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	726					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	TGTATAGCAGGGAATGGCCAC	0.443													9	17					0	0	1	0	0
T	6862	broad.mit.edu	37	6	166581001	166581001	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:166581001C>T	uc003quu.1	-	2	572	c.79G>A	c.(79-81)GAG>AAG	p.E27K	T_uc003qut.1_Missense_Mutation_p.E27K|T_uc003quv.1_Missense_Mutation_p.E27K	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	27					anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		GCCTGCAGCTCATTCTCCACG	0.682									Chordoma_Familial_Clustering_of				7	9					0	0	1	0	0
RPS6KA2	6196	broad.mit.edu	37	6	166944732	166944732	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:166944732C>T	uc003qvb.1	-	3	505	c.286G>A	c.(286-288)GCC>ACC	p.A96T	RPS6KA2_uc011ego.1_Missense_Mutation_p.A7T|RPS6KA2_uc010kkl.1_Missense_Mutation_p.A7T|RPS6KA2_uc003qvc.1_Missense_Mutation_p.A104T|RPS6KA2_uc003qvd.1_Missense_Mutation_p.A121T	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	96	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		TTTAGGGTGGCTTTCTTAAGG	0.478													37	93					0	0	1	0	0
GPR31	2853	broad.mit.edu	37	6	167570885	167570885	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:167570885G>A	uc011egq.1	-	1	435	c.435C>T	c.(433-435)CTC>CTT	p.L145L		NM_005299	NP_005290	O00270	GPR31_HUMAN	G protein-coupled receptor 31	145	Helical; Name=4; (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;4.81e-20)|BRCA - Breast invasive adenocarcinoma(81;4.45e-06)|GBM - Glioblastoma multiforme(31;0.00492)		CCGGGCAGGTGAGGGCGACCA	0.647													25	42					0	0	1	0	0
TCP10L2	401285	broad.mit.edu	37	6	167591985	167591985	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:167591985G>A	uc010kkp.2	+	5	743	c.612G>A	c.(610-612)AGG>AGA	p.R204R		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	204											0						CCACTGGAAGGCCGACTCCCG	0.522													18	80					0	0	1	0	0
TTLL2	83887	broad.mit.edu	37	6	167754223	167754223	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:167754223C>T	uc003qvs.1	+	3	923	c.835C>T	c.(835-837)CGG>TGG	p.R279W	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	279	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		AGGGTTGGTTCGGTTTGCCAC	0.398													78	119					0	0	1	0	0
TTLL2	83887	broad.mit.edu	37	6	167754787	167754787	+	Missense_Mutation	SNP	G	A	A	rs140708449		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:167754787G>A	uc003qvs.1	+	3	1487	c.1399G>A	c.(1399-1401)GAG>AAG	p.E467K	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	467					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		AATGTACAACGAGGATGACTC	0.498													33	50					0	0	1	0	0
TCP10	6953	broad.mit.edu	37	6	167786700	167786700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:167786700C>T	uc003qvv.1	-	8	1150	c.938G>A	c.(937-939)GGA>GAA	p.G313E	TCP10_uc003qvu.2_Intron	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	340						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		GTGCAGAGCTCCTGGAAATTC	0.527													12	92					0	0	1	0	0
TCP10	6953	broad.mit.edu	37	6	167796357	167796357	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:167796357T>A	uc003qvv.1	-	2	217	c.5A>T	c.(4-6)GAG>GTG	p.E2V	TCP10_uc003qvu.2_Missense_Mutation_p.E2V|TCP10_uc003qvw.2_Intron	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	29						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		AGGTGTCTTCTCCATGGCAGC	0.667													5	10					0	0	1	0	0
TCP10	6953	broad.mit.edu	37	6	167796359	167796359	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:167796359C>T	uc003qvv.1	-	2	215	c.3G>A	c.(1-3)ATG>ATA	p.M1I	TCP10_uc003qvu.2_Missense_Mutation_p.M1I|TCP10_uc003qvw.2_Intron	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	28						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		GTGTCTTCTCCATGGCAGCCC	0.662													5	10					0	0	1	0	0
MLLT4	4301	broad.mit.edu	37	6	168265363	168265363	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:168265363C>T	uc003qwd.2	+	2	380	c.238C>T	c.(238-240)CGA>TGA	p.R80*	MLLT4_uc003qwb.1_Nonsense_Mutation_p.R80*|MLLT4_uc003qwc.1_Nonsense_Mutation_p.R80*	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	80	Ras-associating 1.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GGAGAAATTTCGACCTGATAT	0.453			T	MLL	AL								100	114					0	0	1	0	0
MLLT4	4301	broad.mit.edu	37	6	168289904	168289904	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:168289904C>T	uc003qwd.2	+	7	1046	c.904C>T	c.(904-906)CCT>TCT	p.P302S	MLLT4_uc003qwb.1_Missense_Mutation_p.P302S|MLLT4_uc003qwc.1_Missense_Mutation_p.P303S|MLLT4_uc003qwf.2_Missense_Mutation_p.P3S	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	303	Ras-associating 2.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GGTTATGCTTCCTCCTGGAGC	0.333			T	MLL	AL								44	55					0	0	1	0	0
MLLT4	4301	broad.mit.edu	37	6	168352575	168352575	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:168352575C>T	uc003qwd.2	+	29	4659	c.4517C>T	c.(4516-4518)TCG>TTG	p.S1506L	MLLT4_uc003qwb.1_Missense_Mutation_p.S1491L|MLLT4_uc003qwc.1_Missense_Mutation_p.S1507L|MLLT4_uc003qwg.1_Missense_Mutation_p.S816L	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1507					adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GAGCTTTCCTCGGGGGACAGT	0.592			T	MLL	AL								16	35					0	0	1	0	0
FRMD1	79981	broad.mit.edu	37	6	168479715	168479715	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:168479715G>A	uc003qwo.3	-	1	125	c.60C>T	c.(58-60)TTC>TTT	p.F20F		NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	20						cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		CTGAAGGAGGGAACGTGTCAG	0.662													15	37					0	0	1	0	0
SMOC2	64094	broad.mit.edu	37	6	168910679	168910679	+	Missense_Mutation	SNP	G	C	C	rs144833047		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:168910679G>C	uc003qws.1	+	2	189	c.169G>C	c.(169-171)GGA>CGA	p.G57R	SMOC2_uc003qwr.1_Missense_Mutation_p.G57R	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	57	Kazal-like.				signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		CGCATCTGACGGAAGGACCTT	0.463													38	37					0	0	1	0	0
THBS2	7058	broad.mit.edu	37	6	169623443	169623443	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:169623443C>T	uc003qwt.2	-	19	3149	c.2901G>A	c.(2899-2901)TTG>TTA	p.L967L		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	967	TSP C-terminal.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CTTTGGGATCCAAGGGGACCA	0.498													20	41					0	0	1	0	0
WDR27	253769	broad.mit.edu	37	6	170068224	170068224	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:170068224G>A	uc003qwx.2	-	5	1034	c.514C>T	c.(514-516)CCA>TCA	p.P172S	WDR27_uc010kkw.1_Missense_Mutation_p.P172S|WDR27_uc003qwy.2_Intron|WDR27_uc011egw.1_Intron			A2RRH5	WDR27_HUMAN	RecName: Full=WD repeat-containing protein 27;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										pancreas(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.216)		OV - Ovarian serous cystadenocarcinoma(33;6.48e-20)|BRCA - Breast invasive adenocarcinoma(81;3.56e-07)|GBM - Glioblastoma multiforme(31;0.00168)		GTCGGTGGTGGGACTTTGTGG	0.517													22	29					0	0	1	0	0
C6orf70	55780	broad.mit.edu	37	6	170154030	170154030	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:170154030T>A	uc003qxg.1	+	2	110	c.77T>A	c.(76-78)TTT>TAT	p.F26Y	TCTE3_uc003qxe.1_5'Flank|TCTE3_uc003qxf.2_5'Flank|C6orf70_uc011ehb.1_Intron|C6orf70_uc003qxh.1_Missense_Mutation_p.F26Y|C6orf70_uc010kky.1_5'UTR	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	26						integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		AATCTTGGGTTTCAACTCAGA	0.353													10	20					0	0	1	0	0
FAM120B	84498	broad.mit.edu	37	6	170627575	170627575	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:170627575C>T	uc003qxp.2	+	2	1205	c.1097C>T	c.(1096-1098)CCC>CTC	p.P366L	FAM120B_uc003qxo.1_Missense_Mutation_p.P366L|FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	366					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		CGAGAAGTTCCCGTGTATACA	0.527													78	146					0	0	1	0	0
TBP	6908	broad.mit.edu	37	6	170873696	170873696	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:170873696C>T	uc003qxt.2	+	4	793	c.561C>T	c.(559-561)GCC>GCT	p.A187A	TBP_uc003qxu.2_Silent_p.A187A|TBP_uc011ehf.1_Silent_p.A167A	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	187	1.			A -> R (in Ref. 3; AAC03409).	cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		CACTTCGTGCCCGAAACGCCG	0.318													17	26					0	0	1	0	0
PRKAR1B	5575	broad.mit.edu	37	7	751015	751015	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:751015G>A	uc003siu.1	-	3	234	c.128C>T	c.(127-129)CCC>CTC	p.P43L	PRKAR1B_uc003siv.2_Missense_Mutation_p.P43L|PRKAR1B_uc003siw.1_Missense_Mutation_p.P43L	NM_002735	NP_002726	P31321	KAP1_HUMAN	protein kinase, cAMP-dependent, regulatory, type	43	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of insulin secretion|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|Epithelial(4;5.75e-19)|OV - Ovarian serous cystadenocarcinoma(56;2.01e-18)|all cancers(6;3.96e-16)|BRCA - Breast invasive adenocarcinoma(126;0.152)		GGGGCGTTCGGGCTTGGAGAT	0.632													20	61					0	0	1	0	0
HEATR2	54919	broad.mit.edu	37	7	769422	769423	+	Missense_Mutation	DNP	GG	AA	AA	rs142141660		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:769422_769423GG>AA	uc010krz.1	+	2	738_739	c.718_719GG>AA	c.(718-720)GGG>AAG	p.G240K	PRKAR1B_uc003siw.1_5'Flank|HEATR2_uc003siz.2_Missense_Mutation_p.G108K	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	240	HEAT 2.						protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		TTTTGGCAACGGGAAGTCCGTG	0.574													18	41					0	0	1	0	0
HEATR2	54919	broad.mit.edu	37	7	769447	769447	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:769447C>T	uc010krz.1	+	2	763	c.743C>T	c.(742-744)TCC>TTC	p.S248F	PRKAR1B_uc003siw.1_5'Flank|HEATR2_uc003siz.2_Missense_Mutation_p.S116F	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	248	HEAT 3.						protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		GACGTGCTTTCCCATTTTGCT	0.572													18	37					0	0	1	0	0
HEATR2	54919	broad.mit.edu	37	7	780476	780476	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:780476C>T	uc010krz.1	+	3	821	c.801C>T	c.(799-801)TCC>TCT	p.S267S	HEATR2_uc003siz.2_Silent_p.S135S	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	267	HEAT 3.						protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		CGGTGGCCTCCGTGGTGGGCG	0.642													46	194					0	0	1	0	0
HEATR2	54919	broad.mit.edu	37	7	825227	825227	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:825227C>T	uc010krz.1	+	13	2525	c.2505C>T	c.(2503-2505)CAC>CAT	p.H835H	HEATR2_uc003siz.2_Silent_p.H703H|HEATR2_uc003sjb.2_Silent_p.H215H|HEATR2_uc003sjc.2_Silent_p.H260H	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	835							protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		TCCACAAGCACCGCTCGGCCA	0.602													32	61					0	0	1	0	0
SUN1	23353	broad.mit.edu	37	7	892285	892285	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:892285C>T	uc011jvp.1	+	9	970	c.891C>T	c.(889-891)ATC>ATT	p.I297I	GET4_uc003sjj.1_RNA|SUN1_uc003sjf.2_Silent_p.I214I|SUN1_uc011jvq.1_Silent_p.I195I|SUN1_uc003sjg.2_Silent_p.I202I|SUN1_uc011jvr.1_Silent_p.I106I|SUN1_uc003sji.2_Silent_p.I135I|SUN1_uc003sjk.2_5'UTR	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	324	Helical.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						TCTTGCTCATCCCACTCTTCC	0.418													44	149					0	0	1	0	0
GET4	51608	broad.mit.edu	37	7	927046	927046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:927046C>T	uc003sjl.1	+	4	448	c.356C>T	c.(355-357)TCT>TTT	p.S119F	GET4_uc003sjj.1_RNA	NM_015949	NP_057033	Q7L5D6	GET4_HUMAN	hypothetical protein LOC51608	119					tail-anchored membrane protein insertion into ER membrane|transport	BAT3 complex	protein binding				0						GACCCCAACTCTCCTGAGCGC	0.622													37	95					0	0	1	0	0
ADAP1	11033	broad.mit.edu	37	7	938710	938710	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:938710C>T	uc003sjo.3	-	10	1232	c.1056G>A	c.(1054-1056)CAG>CAA	p.Q352Q	ADAP1_uc003sjm.3_Silent_p.Q178Q|ADAP1_uc011jvs.1_Silent_p.Q257Q|ADAP1_uc003sjn.3_Silent_p.Q280Q|ADAP1_uc010ksc.2_Silent_p.Q280Q	NM_006869	NP_006860	O75689	ADAP1_HUMAN	centaurin, alpha 1	352	PH 2.				cell surface receptor linked signaling pathway|regulation of ARF GTPase activity	cytoplasm|nucleus|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|protein binding|zinc ion binding			upper_aerodigestive_tract(1)	1						CCACCGCCTTCTGGAAGGCCG	0.577													18	54					0	0	1	0	0
ADAP1	11033	broad.mit.edu	37	7	938749	938749	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:938749C>T	uc003sjo.3	-	10	1193	c.1017G>A	c.(1015-1017)GAG>GAA	p.E339E	ADAP1_uc003sjm.3_Silent_p.E165E|ADAP1_uc011jvs.1_Silent_p.E244E|ADAP1_uc003sjn.3_Silent_p.E267E|ADAP1_uc010ksc.2_Silent_p.E267E	NM_006869	NP_006860	O75689	ADAP1_HUMAN	centaurin, alpha 1	339	PH 2.				cell surface receptor linked signaling pathway|regulation of ARF GTPase activity	cytoplasm|nucleus|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|protein binding|zinc ion binding			upper_aerodigestive_tract(1)	1						CGGACTCCGTCTCGCAGGCAA	0.602													17	59					0	0	1	0	0
ADAP1	11033	broad.mit.edu	37	7	939091	939091	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:939091C>T	uc003sjo.3	-	9	1008	c.832G>A	c.(832-834)GAT>AAT	p.D278N	ADAP1_uc003sjm.3_Missense_Mutation_p.D104N|ADAP1_uc011jvs.1_Missense_Mutation_p.D183N|ADAP1_uc003sjn.3_Missense_Mutation_p.D206N|ADAP1_uc010ksc.2_Missense_Mutation_p.D206N	NM_006869	NP_006860	O75689	ADAP1_HUMAN	centaurin, alpha 1	278	PH 2.				cell surface receptor linked signaling pathway|regulation of ARF GTPase activity	cytoplasm|nucleus|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|protein binding|zinc ion binding			upper_aerodigestive_tract(1)	1						CTGCGGTCATCCATGGTGAAC	0.637													15	23					0	0	1	0	0
ADAP1	11033	broad.mit.edu	37	7	944731	944731	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:944731C>T	uc003sjo.3	-	5	643	c.467G>A	c.(466-468)CGA>CAA	p.R156Q	ADAP1_uc003sjm.3_5'UTR|ADAP1_uc011jvs.1_Missense_Mutation_p.R61Q|ADAP1_uc003sjn.3_Missense_Mutation_p.R84Q|ADAP1_uc010ksc.2_Missense_Mutation_p.R84Q	NM_006869	NP_006860	O75689	ADAP1_HUMAN	centaurin, alpha 1	156	PH 1.				cell surface receptor linked signaling pathway|regulation of ARF GTPase activity	cytoplasm|nucleus|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|protein binding|zinc ion binding			upper_aerodigestive_tract(1)	1						AGCACCCTCTCGTTCTGTCAG	0.602													32	54					0	0	1	0	0
ADAP1	11033	broad.mit.edu	37	7	959657	959657	+	Silent	SNP	C	T	T	rs149827249		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:959657C>T	uc003sjo.3	-	4	512	c.336G>A	c.(334-336)AAG>AAA	p.K112K	ADAP1_uc011jvs.1_Silent_p.K17K|ADAP1_uc003sjn.3_Silent_p.K40K|ADAP1_uc010ksc.2_Silent_p.K40K	NM_006869	NP_006860	O75689	ADAP1_HUMAN	centaurin, alpha 1	112	Arf-GAP.				cell surface receptor linked signaling pathway|regulation of ARF GTPase activity	cytoplasm|nucleus|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|protein binding|zinc ion binding			upper_aerodigestive_tract(1)	1						GTCGCTCGTACTTGGCCCGGA	0.682													9	27					0	0	1	0	0
UNCX	340260	broad.mit.edu	37	7	1275593	1275593	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:1275593C>T	uc011jvw.1	+	3	576	c.576C>T	c.(574-576)ATC>ATT	p.I192I		NM_001080461	NP_001073930	A6NJT0	UNC4_HUMAN	UNC homeobox	192					cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.74e-15)		CGGAGGAGATCGCGCGCAAGG	0.652													7	17					0	0	1	0	0
INTS1	26173	broad.mit.edu	37	7	1513989	1513989	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:1513989G>A	uc003skn.2	-	41	5745	c.5644C>T	c.(5644-5646)CCC>TCC	p.P1882S	INTS1_uc003skm.1_Missense_Mutation_p.P19S	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1882					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		GCGATCATGGGCAGGTGCCTG	0.726													6	28					0	0	1	0	0
INTS1	26173	broad.mit.edu	37	7	1515939	1515939	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:1515939G>A	uc003skn.2	-	38	5405	c.5304C>T	c.(5302-5304)TGC>TGT	p.C1768C	INTS1_uc003skm.1_5'Flank	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1768					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		CCCCACAGCAGCAGCTGAGCA	0.687													4	11					0	0	1	0	0
TMEM184A	202915	broad.mit.edu	37	7	1587388	1587388	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:1587388C>T	uc003skv.3	-	8	1319	c.1002G>A	c.(1000-1002)GAG>GAA	p.E334E	TMEM184A_uc003skt.3_Silent_p.E313E|TMEM184A_uc003skw.3_Silent_p.E139E	NM_001097620	NP_001091089	Q6ZMB5	T184A_HUMAN	transmembrane protein 184A	334						integral to membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.88e-15)		CTGGTGAATTCTCCTTCTTCT	0.637													6	22					0	0	1	0	0
SNX8	29886	broad.mit.edu	37	7	2297376	2297376	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2297376G>A	uc003slw.2	-	8	1021	c.978C>T	c.(976-978)TCC>TCT	p.S326S		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	326					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		TCACCTTATAGGACTGCAGCA	0.567													67	273					0	0	1	0	0
SNX8	29886	broad.mit.edu	37	7	2297430	2297430	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2297430C>T	uc003slw.2	-	8	967	c.924G>A	c.(922-924)CAG>CAA	p.Q308Q		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	308					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		CGTTCTCTTCCTGCTTACCCT	0.612													67	171					0	0	1	0	0
SNX8	29886	broad.mit.edu	37	7	2302930	2302930	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2302930G>A	uc003slw.2	-	7	893	c.850C>T	c.(850-852)CTG>TTG	p.L284L		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	284					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		GCCTGCTTCAGGGACCCCCAC	0.617													9	34					0	0	1	0	0
SNX8	29886	broad.mit.edu	37	7	2317866	2317866	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2317866G>A	uc003slw.2	-	2	212	c.169C>T	c.(169-171)CCG>TCG	p.P57S		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	57					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		TTCCCCTGCGGCATCTGCATT	0.652													20	45					0	0	1	0	0
EIF3B	8662	broad.mit.edu	37	7	2402289	2402289	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2402289C>T	uc003slx.2	+	3	785	c.702C>T	c.(700-702)TTC>TTT	p.F234F	EIF3B_uc003sly.2_Silent_p.F234F|EIF3B_uc003slz.1_Silent_p.F195F|EIF3B_uc003sma.2_5'UTR	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	234	Sufficient for interaction with EIF3E.|RRM.|Sufficient for interaction with EIF3J.				regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		GGTATATTTTCCTGGAGTACG	0.448													22	48					0	0	1	0	0
CHST12	55501	broad.mit.edu	37	7	2472296	2472296	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2472296C>T	uc003smc.2	+	2	157	c.22C>T	c.(22-24)CGG>TGG	p.R8W	CHST12_uc003smd.2_Missense_Mutation_p.R8W	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	8	Helical; Signal-anchor for type II membrane protein; (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		CCGGCTGTTCCGGCTGTGGCT	0.657													17	35					0	0	1	0	0
CHST12	55501	broad.mit.edu	37	7	2473276	2473276	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2473276C>T	uc003smc.2	+	2	1137	c.1002C>T	c.(1000-1002)ATC>ATT	p.I334I	CHST12_uc003smd.2_Silent_p.I334I	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	334	Lumenal (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		CGTGCCAGATCGACTACGACT	0.657													7	58					0	0	1	0	0
LFNG	3955	broad.mit.edu	37	7	2559870	2559870	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2559870C>T	uc003smf.2	+	1	392	c.375C>T	c.(373-375)TTC>TTT	p.F125F	LFNG_uc003smg.2_Silent_p.F125F	NM_001040167	NP_001035257	Q8NES3	LFNG_HUMAN	lunatic fringe isoform a	125	Lumenal (Potential).				organ morphogenesis	extracellular region|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.54e-14)		CCAAAAAGTTCCACCGCGCGC	0.463													16	47					0	0	1	0	0
AMZ1	155185	broad.mit.edu	37	7	2740316	2740316	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2740316C>T	uc003smr.1	+	2	592	c.231C>T	c.(229-231)TTC>TTT	p.F77F	AMZ1_uc003sms.1_Silent_p.F77F|AMZ1_uc011jwa.1_5'Flank	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	77							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		CCGAGGACTTCCAGACCTTCC	0.667													28	109					0	0	1	0	0
AMZ1	155185	broad.mit.edu	37	7	2740325	2740325	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2740325C>T	uc003smr.1	+	2	601	c.240C>T	c.(238-240)TTC>TTT	p.F80F	AMZ1_uc003sms.1_Silent_p.F80F|AMZ1_uc011jwa.1_5'Flank	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	80							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		TCCAGACCTTCCACGCCTCCC	0.667													35	90					0	0	1	0	0
AMZ1	155185	broad.mit.edu	37	7	2752230	2752230	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2752230G>A	uc003smr.1	+	7	1576	c.1215G>A	c.(1213-1215)AAG>AAA	p.K405K	AMZ1_uc003sms.1_3'UTR|AMZ1_uc011jwa.1_Silent_p.K154K	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	405							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		AGGCCATCAAGGAGCATGAAC	0.687													6	13					0	0	1	0	0
GNA12	2768	broad.mit.edu	37	7	2770902	2770902	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2770902G>A	uc003smu.2	-	4	1223	c.1059C>T	c.(1057-1059)GCC>GCT	p.A353A	GNA12_uc011jwb.1_Silent_p.A336A|GNA12_uc003smt.2_Silent_p.A294A	NM_007353	NP_031379	Q03113	GNA12_HUMAN	guanine nucleotide binding protein (G protein)	353		GTP; via amide nitrogen (By similarity).			G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.02e-13)		CGGTGTCGATGGCGGTGGTGA	0.597													26	57					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2946452	2946452	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2946452C>T	uc003smv.2	-	25	3689	c.3285G>A	c.(3283-3285)ACG>ACA	p.T1095T		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	1095	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		ACTCCTCCTCCGTCTCAGGTC	0.682			Mis		DLBCL								16	24					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2959084	2959084	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2959084C>T	uc003smv.2	-	18	2836	c.2432G>A	c.(2431-2433)AGG>AAG	p.R811K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	811					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CCACTCGTGCCTGTCCTGGTA	0.607			Mis		DLBCL								27	48					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2963962	2963962	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2963962G>A	uc003smv.2	-	15	2249	c.1845C>T	c.(1843-1845)TCC>TCT	p.S615S		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	615					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		AGGAGTGGATGGAGGAGGGTC	0.612			Mis		DLBCL								32	59					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2972186	2972186	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2972186C>T	uc003smv.2	-	11	1957	c.1553G>A	c.(1552-1554)CGA>CAA	p.R518Q		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	518					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		ATCTGATGTTCGCTTCAGGCT	0.493			Mis		DLBCL								7	25					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2979523	2979523	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:2979523C>T	uc003smv.2	-	6	1128	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	242	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		AGCTTACATTCCTCCTCCATC	0.478			Mis		DLBCL								32	124					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	3658723	3658723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:3658723C>T	uc003smx.2	+	2	449	c.310C>T	c.(310-312)CCA>TCA	p.P104S		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	104	Ig-like C2-type 1.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGATGTTGCTCCATATTTTAA	0.378													6	18					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	3658762	3658762	+	Silent	SNP	C	T	T	rs146442815		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:3658762C>T	uc003smx.2	+	2	488	c.349C>T	c.(349-351)CTG>TTG	p.L117L		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	117	Ig-like C2-type 1.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		ACAGATCCACCTGGAAGGGAA	0.453													12	24					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	3658802	3658803	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:3658802_3658803GG>AA	uc003smx.2	+	2	528_529	c.389_390GG>AA	c.(388-390)GGG>GAA	p.G130E		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	130	Ig-like C2-type 1.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CTTGCCGAAGGGAGCTGGCCTT	0.475													9	53					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	3681616	3681616	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:3681616C>T	uc003smx.2	+	4	731	c.592C>T	c.(592-594)CAG>TAG	p.Q198*		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	198	Ig-like C2-type 2.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GGATACGGACCAGAGGAAAAC	0.468													13	66					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4150369	4150369	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4150369G>A	uc003smx.2	+	23	3538	c.3399G>A	c.(3397-3399)CTG>CTA	p.L1133L	SDK1_uc010kso.2_Silent_p.L409L	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1133	Fibronectin type-III 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CCCAGATGCTGGAGATCCCAA	0.557													23	40					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4153693	4153693	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4153693G>A	uc003smx.2	+	25	3749	c.3610G>A	c.(3610-3612)GGG>AGG	p.G1204R	SDK1_uc010kso.2_Missense_Mutation_p.G480R	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1204	Fibronectin type-III 6.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TCAGTACAACGGGAACCCCGA	0.587													17	38					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4153782	4153782	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4153782G>A	uc003smx.2	+	25	3838	c.3699G>A	c.(3697-3699)CTG>CTA	p.L1233L	SDK1_uc010kso.2_Silent_p.L509L	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1233	Fibronectin type-III 6.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GTGACCGGCTGGAGAGAGAAT	0.612													12	42					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4153809	4153809	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4153809G>A	uc003smx.2	+	25	3865	c.3726G>A	c.(3724-3726)CTG>CTA	p.L1242L	SDK1_uc010kso.2_Silent_p.L518L	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1242	Fibronectin type-III 6.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TCGAGGAGCTGGAGGAGTGGA	0.632													13	32					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4201420	4201420	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4201420C>T	uc003smx.2	+	32	4871	c.4732C>T	c.(4732-4734)CCA>TCA	p.P1578S	SDK1_uc010kso.2_Missense_Mutation_p.P854S|SDK1_uc003smy.2_Missense_Mutation_p.P65S	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1578	Fibronectin type-III 10.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGTTTCAGTTCCAGGAGAGCC	0.607													31	140					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4201467	4201467	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4201467C>T	uc003smx.2	+	32	4918	c.4779C>T	c.(4777-4779)TCC>TCT	p.S1593S	SDK1_uc010kso.2_Silent_p.S869S|SDK1_uc003smy.2_Silent_p.S80S	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1593	Fibronectin type-III 10.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		ACACCACGTCCTCTGTCCTGA	0.562													44	116					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4249749	4249749	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4249749C>T	uc003smx.2	+	38	5633	c.5494C>T	c.(5494-5496)CTG>TTG	p.L1832L	SDK1_uc010kso.2_Silent_p.L1088L|SDK1_uc003smy.2_Silent_p.L319L	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1832	Fibronectin type-III 12.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CAACGGCATCCTGCAGGGCTA	0.667													10	58					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4277346	4277346	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4277346C>T	uc003smx.2	+	42	6199	c.6060C>T	c.(6058-6060)ATC>ATT	p.I2020I	SDK1_uc010kso.2_Silent_p.I1276I|SDK1_uc003smy.2_Silent_p.I507I|SDK1_uc003smz.2_Silent_p.I80I	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	2020	Extracellular (Potential).|Helical; (Potential).				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CCAGCCTGATCGTCATCCTGC	0.567													27	85					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4281431	4281431	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4281431G>A	uc003smx.2	+	43	6276	c.6137G>A	c.(6136-6138)GGG>GAG	p.G2046E	SDK1_uc010kso.2_Missense_Mutation_p.G1302E|SDK1_uc003smy.2_Missense_Mutation_p.G533E|SDK1_uc003smz.2_Missense_Mutation_p.G106E	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	2046	Extracellular (Potential).|Cytoplasmic (Potential).				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TTAGGAAAGGGGATCTCCACC	0.607													8	30					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4281435	4281435	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4281435C>T	uc003smx.2	+	43	6280	c.6141C>T	c.(6139-6141)ATC>ATT	p.I2047I	SDK1_uc010kso.2_Silent_p.I1303I|SDK1_uc003smy.2_Silent_p.I534I|SDK1_uc003smz.2_Silent_p.I107I	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	2047	Extracellular (Potential).|Cytoplasmic (Potential).				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GAAAGGGGATCTCCACCATGG	0.602													10	30					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4281527	4281527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4281527C>T	uc003smx.2	+	43	6372	c.6233C>T	c.(6232-6234)TCC>TTC	p.S2078F	SDK1_uc010kso.2_Missense_Mutation_p.S1334F|SDK1_uc003smy.2_Missense_Mutation_p.S565F|SDK1_uc003smz.2_Missense_Mutation_p.S138F	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	2078	Extracellular (Potential).|Cytoplasmic (Potential).				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		AGCACCTTCTCCAAGAAGAAC	0.632													9	36					0	0	1	0	0
FOXK1	221937	broad.mit.edu	37	7	4798696	4798696	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4798696C>T	uc003snc.1	+	6	1269	c.1259C>T	c.(1258-1260)TCG>TTG	p.S420L	FOXK1_uc003sna.1_Missense_Mutation_p.S257L	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	420					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		GCTCCAGCTTCGCCCACACAC	0.682													37	80					0	0	1	0	0
RADIL	55698	broad.mit.edu	37	7	4841445	4841445	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4841445G>A	uc003snj.1	-	12	2854	c.2681C>T	c.(2680-2682)CCC>CTC	p.P894L	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Missense_Mutation_p.P399L|RADIL_uc011jwc.1_Missense_Mutation_p.P654L|RADIL_uc011jwd.1_RNA|RADIL_uc003snh.1_Missense_Mutation_p.P190L	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	894	Pro-rich.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		CGTGTGCGGGGGGCCAGCCTG	0.726													11	14					0	0	1	0	0
RADIL	55698	broad.mit.edu	37	7	4855892	4855892	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4855892C>T	uc003snj.1	-	8	2106	c.1933G>A	c.(1933-1935)GGG>AGG	p.G645R	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Missense_Mutation_p.G150R|RADIL_uc011jwc.1_Missense_Mutation_p.G405R|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	645	Dilute.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		AGCAGTGTCCCGGAGAAGAAG	0.657													9	39					0	0	1	0	0
RADIL	55698	broad.mit.edu	37	7	4855936	4855936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:4855936G>A	uc003snj.1	-	8	2062	c.1889C>T	c.(1888-1890)CCC>CTC	p.P630L	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Missense_Mutation_p.P135L|RADIL_uc011jwc.1_Missense_Mutation_p.P390L|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	630	Dilute.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		GGCCACCTCGGGGTGCACCTG	0.667													7	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	5167360	5167360	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5167360G>A	uc003snu.1	-	2	135	c.24C>T	c.(22-24)TTC>TTT	p.F8F	uc010ksu.1_Intron|uc011jwf.1_Silent_p.F8F					SubName: Full=cDNA FLJ60262, weakly similar to Zinc finger protein 81;																		CCACGTCCCCGAATGACAGTG	0.557													4	16					0	0	1	0	0
SLC29A4	222962	broad.mit.edu	37	7	5331432	5331432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5331432C>T	uc003sod.2	+	5	685	c.524C>T	c.(523-525)ACC>ATC	p.T175I	SLC29A4_uc011jwg.1_RNA|SLC29A4_uc003soc.2_Missense_Mutation_p.T175I|SLC29A4_uc003soe.2_Missense_Mutation_p.P163S	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	175	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		GCTGTGGGCACCGTGGCCTTC	0.647													11	82					0	0	1	0	0
SLC29A4	222962	broad.mit.edu	37	7	5340055	5340055	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5340055C>T	uc003sod.2	+	10	1373	c.1212C>T	c.(1210-1212)ATC>ATT	p.I404I	SLC29A4_uc003soc.2_Silent_p.I404I|SLC29A4_uc003soe.2_Silent_p.I390I|SLC29A4_uc010ksw.2_Intron	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	404	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		CTCTGCAGATCCTGGCAGCCC	0.667													22	52					0	0	1	0	0
TNRC18	84629	broad.mit.edu	37	7	5355600	5355600	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5355600G>A	uc003soi.3	-	25	7198	c.6849C>T	c.(6847-6849)GAC>GAT	p.D2283D		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	2283							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GTATCTTATAGTCAGGGGGCA	0.612													6	22					0	0	1	0	0
FBXL18	80028	broad.mit.edu	37	7	5529693	5529693	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5529693G>A	uc003soo.2	-	5	2245	c.2151C>T	c.(2149-2151)GTC>GTT	p.V717V	FBXL18_uc003son.3_Intron	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	717										central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		TTATTCCTGAGACAGCCAGCG	0.488													5	8					0	0	1	0	0
FBXL18	80028	broad.mit.edu	37	7	5540286	5540286	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5540286G>A	uc003soo.2	-	3	1708	c.1614C>T	c.(1612-1614)CTC>CTT	p.L538L	FBXL18_uc003son.3_Silent_p.L538L	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	538	LRR 9.									central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		GCAGCTGTGCGAGCGTCAGGT	0.687													11	19					0	0	1	0	0
FBXL18	80028	broad.mit.edu	37	7	5540495	5540495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5540495G>A	uc003soo.2	-	3	1499	c.1405C>T	c.(1405-1407)CCC>TCC	p.P469S	FBXL18_uc003son.3_Missense_Mutation_p.P469S	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	469	LRR 8.									central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		GAGGGCTGGGGGCACGCCTGG	0.592													14	20					0	0	1	0	0
FBXL18	80028	broad.mit.edu	37	7	5541334	5541334	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5541334G>A	uc003soo.2	-	3	660	c.566C>T	c.(565-567)CCC>CTC	p.P189L	FBXL18_uc003son.3_Missense_Mutation_p.P189L	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	189	LRR 4.									central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		GGTGCAGCAGGGCACCACGCC	0.662													3	15					0	0	1	0	0
FBXL18	80028	broad.mit.edu	37	7	5545195	5545195	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5545195G>A	uc003soo.2	-	2	179	c.85C>T	c.(85-87)CTA>TTA	p.L29L	FBXL18_uc003son.3_Silent_p.L29L	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	29	F-box.									central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		GAGAACCCTAGGAGGTGGACC	0.552													29	59					0	0	1	0	0
ACTB	60	broad.mit.edu	37	7	5567942	5567942	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5567942G>A	uc003sos.3	-	3	808	c.772C>T	c.(772-774)CCT>TCT	p.P258S	ACTB_uc003sor.3_Missense_Mutation_p.P136S|ACTB_uc003sot.3_Missense_Mutation_p.P258S|ACTB_uc003soq.3_Missense_Mutation_p.P136S|ACTB_uc010ksy.2_Missense_Mutation_p.P136S	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	258					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		AGTGCCTCAGGGCAGCGGAAC	0.617													36	94					0	0	1	0	0
RNF216	54476	broad.mit.edu	37	7	5662644	5662644	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5662644G>A	uc003soy.1	-	17	2638	c.2448C>T	c.(2446-2448)TTC>TTT	p.F816F	RNF216_uc010ksz.1_Silent_p.F438F|RNF216_uc010kta.1_Silent_p.F438F|RNF216_uc011jwj.1_Silent_p.F438F|RNF216_uc003sox.1_Silent_p.F873F	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	816	Pro-rich.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		GGAAGTTGTTGAACACAGGCC	0.652													33	119					0	0	1	0	0
OCM	654231	broad.mit.edu	37	7	5925699	5925699	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:5925699C>T	uc003spe.3	+	4	401	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_001097622	NP_001091091	P0CE72	ONCO_HUMAN	oncomodulin	103	EF-hand 2.						calcium ion binding				0		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0978)|OV - Ovarian serous cystadenocarcinoma(56;2.11e-14)		TTCTAGAATTCCAGGAAATGG	0.493													23	52					0	0	1	0	0
PMS2	5395	broad.mit.edu	37	7	6026741	6026741	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:6026741T>C	uc003spl.2	-	11	1742	c.1655A>G	c.(1654-1656)CAT>CGT	p.H552R	PMS2_uc003spj.2_Missense_Mutation_p.H446R|PMS2_uc003spk.2_Missense_Mutation_p.H417R|PMS2_uc011jwl.1_Missense_Mutation_p.H417R|PMS2_uc010ktg.2_Missense_Mutation_p.H241R|PMS2_uc010kte.2_Intron|PMS2_uc010ktf.1_Missense_Mutation_p.H552R	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	552					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		CTGGTTTGAATGGCAGTCCAC	0.473			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				88	217					0	0	1	0	0
EIF2AK1	27102	broad.mit.edu	37	7	6094294	6094294	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:6094294G>A	uc003spp.2	-	2	306	c.160C>T	c.(160-162)CTA>TTA	p.L54L	EIF2AK1_uc003spq.2_Silent_p.L54L|EIF2AK1_uc011jwm.1_5'UTR	NM_014413	NP_055228	Q9BQI3	E2AK1_HUMAN	eukaryotic translation initiation factor 2-alpha	54					negative regulation of hemoglobin biosynthetic process|negative regulation of translational initiation by iron|protein autophosphorylation|response to external stimulus|response to stress	cytoplasm	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|heme binding|protein homodimerization activity			upper_aerodigestive_tract(1)|stomach(1)|lung(1)|central_nervous_system(1)	4		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.106)|OV - Ovarian serous cystadenocarcinoma(56;5.22e-14)		GGCTGTTGTAGGGGTTCTTTT	0.393													42	140					0	0	1	0	0
DAGLB	221955	broad.mit.edu	37	7	6476061	6476061	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:6476061G>A	uc003sqa.2	-	3	521	c.351C>T	c.(349-351)GCC>GCT	p.A117A	DAGLB_uc011jwt.1_5'Flank|DAGLB_uc011jwu.1_Silent_p.A117A|DAGLB_uc003sqb.2_Intron|DAGLB_uc003sqc.2_Intron|DAGLB_uc011jwv.1_Intron|DAGLB_uc003sqd.3_Silent_p.A76A|DAGLB_uc011jww.1_Intron	NM_139179	NP_631918	Q8NCG7	DGLB_HUMAN	diacylglycerol lipase, beta isoform 1	117	Helical; (Potential).				lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.102)		CTGCCACCCAGGCAGCCCCCA	0.542													66	120					0	0	1	0	0
C7orf26	79034	broad.mit.edu	37	7	6641744	6641744	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:6641744C>T	uc003sqo.1	+	5	1121	c.1121C>T	c.(1120-1122)ACC>ATC	p.T374I	C7orf26_uc003sqp.1_Missense_Mutation_p.T277I|C7orf26_uc003sqq.1_Missense_Mutation_p.T175I	NM_024067	NP_076972	Q96N11	CG026_HUMAN	hypothetical protein LOC79034	374										ovary(1)	1		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)		GACCTGAGAACCTTGTGCTCC	0.502											OREG0017863	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	67					0	0	1	0	0
ZNF12	7559	broad.mit.edu	37	7	6731807	6731807	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:6731807G>A	uc003sqt.1	-	5	1320	c.766C>T	c.(766-768)CTC>TTC	p.L256F	ZNF12_uc011jxa.1_Missense_Mutation_p.L94F|ZNF12_uc003sqs.1_Missense_Mutation_p.L218F	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	256					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		TGTACAGTGAGGTCCGACATC	0.388													18	52					0	0	1	0	0
C1GALT1	56913	broad.mit.edu	37	7	7283191	7283191	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:7283191C>T	uc010ktn.2	+	4	1148	c.925C>T	c.(925-927)CAC>TAC	p.H309Y	C1GALT1_uc003sra.2_Missense_Mutation_p.H309Y|uc003srb.1_5'Flank	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	309	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		AGTTTCTTTTCACTATGTTGA	0.358													34	160					0	0	1	0	0
COL28A1	340267	broad.mit.edu	37	7	7561562	7561562	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:7561562C>T	uc003src.1	-	5	850	c.733G>A	c.(733-735)GGA>AGA	p.G245R	COL28A1_uc011jxe.1_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	245	Collagen-like 1.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CCTGGATCTCCCTTCTCACAT	0.368													18	58					0	0	1	0	0
COL28A1	340267	broad.mit.edu	37	7	7572486	7572486	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:7572486G>A	uc003src.1	-	2	138	c.21C>T	c.(19-21)GTC>GTT	p.V7V	COL28A1_uc011jxe.1_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	7					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		GGAGATAGAAGACAAAATATC	0.348													46	94					0	0	1	0	0
ICA1	3382	broad.mit.edu	37	7	8167710	8167710	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:8167710G>A	uc003srm.2	-	13	1190	c.1123C>T	c.(1123-1125)CTG>TTG	p.L375L	ICA1_uc010ktr.2_Silent_p.L404L|ICA1_uc003srl.2_Silent_p.L363L|ICA1_uc003srn.3_Silent_p.L301L|ICA1_uc003srp.3_Silent_p.L374L|ICA1_uc010kts.2_RNA|ICA1_uc003srq.2_Silent_p.L375L|ICA1_uc003srr.2_Silent_p.L374L|ICA1_uc003sro.3_Silent_p.L375L	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	375					neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		TCACTCAACAGCAGCAGGTCA	0.552													33	170					0	0	1	0	0
ICA1	3382	broad.mit.edu	37	7	8181439	8181439	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:8181439G>A	uc003srm.2	-	10	978	c.911C>T	c.(910-912)TCA>TTA	p.S304L	ICA1_uc010ktr.2_Missense_Mutation_p.S333L|ICA1_uc003srl.2_Missense_Mutation_p.S292L|ICA1_uc003srn.3_Missense_Mutation_p.S230L|ICA1_uc003srp.3_Missense_Mutation_p.S303L|ICA1_uc010kts.2_Intron|ICA1_uc003srq.2_Missense_Mutation_p.S304L|ICA1_uc003srr.2_Missense_Mutation_p.S303L|ICA1_uc003sro.3_Missense_Mutation_p.S304L	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	304					neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		TTCCTCTAATGAAATTAATCT	0.279													3	22					0	0	1	0	0
ICA1	3382	broad.mit.edu	37	7	8183561	8183561	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:8183561C>T	uc003srm.2	-	9	913	c.846G>A	c.(844-846)GAG>GAA	p.E282E	ICA1_uc010ktr.2_Silent_p.E282E|ICA1_uc003srl.2_Silent_p.E270E|ICA1_uc003srn.3_Silent_p.E208E|ICA1_uc003srp.3_Silent_p.E281E|ICA1_uc010kts.2_Intron|ICA1_uc003srq.2_Silent_p.E282E|ICA1_uc003srr.2_Silent_p.E281E|ICA1_uc003sro.3_Silent_p.E282E	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	282					neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		TTTTCTTCTTCTCTTCTTTCT	0.368													22	40					0	0	1	0	0
ICA1	3382	broad.mit.edu	37	7	8196821	8196821	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:8196821C>T	uc003srm.2	-	8	796	c.729G>A	c.(727-729)GAG>GAA	p.E243E	ICA1_uc010ktr.2_Silent_p.E243E|ICA1_uc003srl.2_Silent_p.E231E|ICA1_uc003srn.3_Silent_p.E169E|ICA1_uc003srp.3_Silent_p.E242E|ICA1_uc010kts.2_Intron|ICA1_uc003srq.2_Silent_p.E243E|ICA1_uc003srr.2_Silent_p.E242E|ICA1_uc003sro.3_Silent_p.E243E|ICA1_uc011jxg.1_Silent_p.E243E|ICA1_uc003srs.1_Silent_p.E243E	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	243	AH.				neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		GAGAAGTTTTCTCCCAAAAAT	0.418													29	65					0	0	1	0	0
NXPH1	30010	broad.mit.edu	37	7	8790821	8790821	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:8790821G>A	uc003srv.2	+	3	1149	c.238G>A	c.(238-240)GAA>AAA	p.E80K	NXPH1_uc011jxh.1_5'UTR	NM_152745	NP_689958	P58417	NXPH1_HUMAN	neurexophilin 1 precursor	80	II.					extracellular region				ovary(1)|central_nervous_system(1)	2		Ovarian(82;0.0628)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)		TGACACCCCAGAACCTTATTC	0.507													30	40					0	0	1	0	0
NXPH1	30010	broad.mit.edu	37	7	8790865	8790865	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:8790865C>T	uc003srv.2	+	3	1193	c.282C>T	c.(280-282)TCC>TCT	p.S94S	NXPH1_uc011jxh.1_5'UTR	NM_152745	NP_689958	P58417	NXPH1_HUMAN	neurexophilin 1 precursor	94	II.					extracellular region				ovary(1)|central_nervous_system(1)	2		Ovarian(82;0.0628)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)		TGAGGAACTCCACAGACCTTC	0.478													20	65					0	0	1	0	0
PHF14	9678	broad.mit.edu	37	7	11068332	11068332	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:11068332C>T	uc003sry.1	+	7	1777	c.1342C>T	c.(1342-1344)CGC>TGC	p.R448C	PHF14_uc011jxi.1_Missense_Mutation_p.R163C|PHF14_uc003srz.2_Missense_Mutation_p.R448C|PHF14_uc011jxj.1_Missense_Mutation_p.R163C	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	448							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		TGAAGACCCTCGCTTTGCTAG	0.433													18	35					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11450874	11450874	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:11450874C>T	uc003ssf.3	-	18	4010	c.3758G>A	c.(3757-3759)CGA>CAA	p.R1253Q		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1253	TSP type-1 12.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GCCATCACTTCGAACACAATC	0.403										HNSCC(18;0.044)			20	48					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11468641	11468641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:11468641G>A	uc003ssf.3	-	14	3428	c.3176C>T	c.(3175-3177)TCT>TTT	p.S1059F		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1059	TSP type-1 11.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CAGCCATTTAGAACGAACCTT	0.507										HNSCC(18;0.044)			97	284					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11630225	11630225	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:11630225G>A	uc003ssf.3	-	4	1567	c.1315C>T	c.(1315-1317)CCT>TCT	p.P439S		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	439	Extracellular (Potential).|TSP type-1 4.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CTGAGCAAAGGGTCCACACGG	0.537										HNSCC(18;0.044)			5	26					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11632983	11632983	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:11632983C>T	uc003ssf.3	-	3	1421	c.1169G>A	c.(1168-1170)CGA>CAA	p.R390Q		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	390	TSP type-1 3.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CCTGATGGTTCGTGTCCTTAC	0.512										HNSCC(18;0.044)			22	42					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11676363	11676363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:11676363C>T	uc003ssf.3	-	2	668	c.416G>A	c.(415-417)AGC>AAC	p.S139N		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	139	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TTTCTCTAGGCTTTTTGAAAT	0.458										HNSCC(18;0.044)			21	54					0	0	1	0	0
SCIN	85477	broad.mit.edu	37	7	12691524	12691524	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:12691524C>T	uc003ssn.3	+	15	2228	c.2018C>T	c.(2017-2019)TCT>TTT	p.S673F	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Missense_Mutation_p.S426F	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	673	Ca(2+)-dependent actin binding.				actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		TCTCTGAAGTCTGGTAAGCTC	0.338													4	6					0	0	1	0	0
ETV1	2115	broad.mit.edu	37	7	13935508	13935508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:13935508C>T	uc011jxq.1	-	14	2156	c.1417G>A	c.(1417-1419)GAA>AAA	p.E473K	ETV1_uc011jxn.1_Missense_Mutation_p.E433K|ETV1_uc011jxo.1_Missense_Mutation_p.E370K|ETV1_uc011jxp.1_Missense_Mutation_p.E415K|ETV1_uc003ssw.3_Missense_Mutation_p.E450K|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.E455K|ETV1_uc011jxs.1_Missense_Mutation_p.E455K	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	473					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						ACGTAGCCTTCGTTGTAGGGG	0.478			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								8	19					0	0	1	0	0
DGKB	1607	broad.mit.edu	37	7	14378223	14378223	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:14378223C>T	uc003ssz.2	-	22	2229	c.2042G>A	c.(2041-2043)CGA>CAA	p.R681Q	DGKB_uc011jxt.1_Missense_Mutation_p.R662Q|DGKB_uc003sta.2_Missense_Mutation_p.R681Q|DGKB_uc011jxu.1_Missense_Mutation_p.R680Q	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	681					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TCGATGGCTTCGTCTTTTCTT	0.398													36	81					0	0	1	0	0
DGKB	1607	broad.mit.edu	37	7	14797324	14797324	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:14797324C>T	uc003ssz.2	-	2	290	c.103G>A	c.(103-105)GAA>AAA	p.E35K	DGKB_uc011jxt.1_Missense_Mutation_p.E35K|DGKB_uc003sta.2_Missense_Mutation_p.E35K|DGKB_uc011jxu.1_Missense_Mutation_p.E35K|DGKB_uc011jxv.1_Missense_Mutation_p.E35K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	35					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	CCATGGAATTCTTCAAGAACA	0.328													14	51					0	0	1	0	0
DGKB	1607	broad.mit.edu	37	7	14880842	14880842	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:14880842G>A	uc003ssz.2	-	1	234	c.47C>T	c.(46-48)TCC>TTC	p.S16F	DGKB_uc011jxt.1_Missense_Mutation_p.S16F|DGKB_uc003sta.2_Missense_Mutation_p.S16F|DGKB_uc011jxu.1_Missense_Mutation_p.S16F|DGKB_uc011jxv.1_Missense_Mutation_p.S16F	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	16					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	CTGAAGTTGGGAAAATTCCGA	0.368													6	15					0	0	1	0	0
MEOX2	4223	broad.mit.edu	37	7	15666539	15666539	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:15666539G>A	uc003stc.2	-	2	803	c.522C>T	c.(520-522)TCC>TCT	p.S174S	MEOX2_uc011jxw.1_Silent_p.S174S	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	174					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		TTCCTTCCTGGGAGTCTGAAA	0.363													27	72					0	0	1	0	0
ISPD	729920	broad.mit.edu	37	7	16298032	16298032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:16298032G>A	uc010ktx.2	-	8	1102	c.1102C>T	c.(1102-1104)CCT>TCT	p.P368S	ISPD_uc010kty.2_Missense_Mutation_p.P318S|uc003stf.2_Intron	NM_001101426	NP_001094896	A4D126	ISPD_HUMAN	notch1-induced protein isoform a	368					isoprenoid biosynthetic process		nucleotidyltransferase activity			ovary(1)	1						ACAACAACAGGATATAAAATG	0.318										Multiple Myeloma(15;0.18)			6	21					0	0	1	0	0
BZW2	28969	broad.mit.edu	37	7	16714053	16714053	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:16714053C>T	uc003stl.2	+	3	253	c.75C>T	c.(73-75)TTC>TTT	p.F25F	BZW2_uc011jxx.1_5'UTR|BZW2_uc003stm.2_5'UTR|BZW2_uc003stj.2_Silent_p.F25F|BZW2_uc003stk.2_5'UTR|BZW2_uc003stn.1_Silent_p.F25F|BZW2_uc003sto.1_5'UTR|BZW2_uc003stp.2_5'UTR|BZW2_uc010kua.2_Silent_p.F25F	NM_001159767	NP_001153239	Q9Y6E2	BZW2_HUMAN	basic leucine zipper and W2 domains 2	25					cell differentiation|nervous system development|RNA metabolic process		protein binding			ovary(2)	2	Lung NSC(10;0.0367)|all_lung(11;0.0837)			UCEC - Uterine corpus endometrioid carcinoma (126;0.199)		AAGAGAAATTCGAACCCACAG	0.333													37	102					0	0	1	0	0
TSPAN13	27075	broad.mit.edu	37	7	16817503	16817503	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:16817503C>T	uc003stq.2	+	4	635	c.393C>T	c.(391-393)TTC>TTT	p.F131F		NM_014399	NP_055214	O95857	TSN13_HUMAN	tetraspan NET-6	131	Extracellular (Potential).					integral to plasma membrane|membrane fraction				ovary(1)	1	Lung NSC(10;0.0494)|all_lung(11;0.109)			UCEC - Uterine corpus endometrioid carcinoma (126;0.188)		GCTGTGGGTTCCGAAGTGTTA	0.368													13	71					0	0	1	0	0
AGR2	10551	broad.mit.edu	37	7	16839434	16839434	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:16839434C>T	uc003str.2	-	5	451	c.264G>A	c.(262-264)AAG>AAA	p.K88K		NM_006408	NP_006399	O95994	AGR2_HUMAN	anterior gradient 2 homolog precursor	88					mucus secretion	endoplasmic reticulum|extracellular region	protein binding				0	Lung NSC(10;0.0376)|all_lung(11;0.0855)			UCEC - Uterine corpus endometrioid carcinoma (126;0.184)		CAAACACTTTCTTTAAAGCTA	0.289													5	47					0	0	1	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067202	18067202	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:18067202C>T	uc003stz.2	-	1	285	c.204G>A	c.(202-204)ATG>ATA	p.M68I		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	68					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					TCAAAAGCTCCATTAGACTGT	0.478													102	278					0	0	1	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067213	18067213	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:18067213C>T	uc003stz.2	-	1	274	c.193G>A	c.(193-195)GAC>AAC	p.D65N		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	65					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					ATTAGACTGTCGTTGATTTCG	0.478													120	286					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18624985	18624986	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:18624985_18624986CC>TT	uc003suh.2	+	2	145_146	c.104_105CC>TT	c.(103-105)CCC>CTT	p.P35L	HDAC9_uc003sue.2_Missense_Mutation_p.P35L|HDAC9_uc011jyd.1_Missense_Mutation_p.P35L|HDAC9_uc003sui.2_Missense_Mutation_p.P35L|HDAC9_uc003suj.2_Missense_Mutation_p.P35L|HDAC9_uc011jya.1_Missense_Mutation_p.P76L|HDAC9_uc003sua.1_Missense_Mutation_p.P54L|HDAC9_uc011jyb.1_Missense_Mutation_p.P35L|HDAC9_uc003sud.1_Missense_Mutation_p.P35L|HDAC9_uc011jyc.1_Missense_Mutation_p.P35L|HDAC9_uc003suf.1_Missense_Mutation_p.P63L|HDAC9_uc010kud.1_Missense_Mutation_p.P35L|HDAC9_uc011jye.1_Missense_Mutation_p.P4L|HDAC9_uc011jyf.1_Missense_Mutation_p.P4L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	35					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	ATGATGATGCCCGTGGTGGACC	0.48													53	119					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18674337	18674337	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:18674337C>T	uc003suh.2	+	7	916	c.875C>T	c.(874-876)TCG>TTG	p.S292L	HDAC9_uc003sue.2_Missense_Mutation_p.S292L|HDAC9_uc011jyd.1_Missense_Mutation_p.S292L|HDAC9_uc003sui.2_Missense_Mutation_p.S295L|HDAC9_uc003suj.2_Missense_Mutation_p.S251L|HDAC9_uc011jya.1_Missense_Mutation_p.S289L|HDAC9_uc003sua.1_Missense_Mutation_p.S270L|HDAC9_uc011jyb.1_Missense_Mutation_p.S248L|HDAC9_uc003sud.1_Missense_Mutation_p.S292L|HDAC9_uc011jyc.1_Missense_Mutation_p.S251L|HDAC9_uc003suf.1_Missense_Mutation_p.S323L|HDAC9_uc010kud.1_Missense_Mutation_p.S295L|HDAC9_uc011jye.1_Missense_Mutation_p.S264L|HDAC9_uc011jyf.1_Missense_Mutation_p.S215L|HDAC9_uc010kue.1_Missense_Mutation_p.S35L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	292	Interaction with MAPK10 (By similarity).				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AATGAGACTTCGGTTTTGCCC	0.403													5	10					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18705913	18705913	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:18705913C>T	uc003suh.2	+	11	1577	c.1536C>T	c.(1534-1536)GAC>GAT	p.D512D	HDAC9_uc003sue.2_Silent_p.D512D|HDAC9_uc011jyd.1_Silent_p.D512D|HDAC9_uc003sui.2_Silent_p.D515D|HDAC9_uc003suj.2_Silent_p.D471D|HDAC9_uc011jya.1_Silent_p.D509D|HDAC9_uc003sua.1_Silent_p.D490D|HDAC9_uc011jyb.1_Silent_p.D468D|HDAC9_uc003sud.1_Silent_p.D512D|HDAC9_uc011jyc.1_Silent_p.D471D|HDAC9_uc003suf.1_Silent_p.D543D|HDAC9_uc010kud.1_Silent_p.D515D|HDAC9_uc011jye.1_Silent_p.D484D|HDAC9_uc011jyf.1_Silent_p.D435D|HDAC9_uc010kue.1_Intron	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	512					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TTCAGGGGGACCAGGCGATGC	0.537											OREG0017877	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	150					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18788653	18788653	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:18788653G>A	uc003suh.2	+	13	1967	c.1926G>A	c.(1924-1926)CTG>CTA	p.L642L	HDAC9_uc003sue.2_Silent_p.L642L|HDAC9_uc011jyd.1_Silent_p.L642L|HDAC9_uc003sui.2_Silent_p.L645L|HDAC9_uc003suj.2_Silent_p.L601L|HDAC9_uc003sua.1_Silent_p.L620L|HDAC9_uc010kue.1_Silent_p.L297L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	642	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CCTTGATGCTGAAACACCAGT	0.438													11	22					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18788727	18788727	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:18788727G>A	uc003suh.2	+	13	2041	c.2000G>A	c.(1999-2001)CGA>CAA	p.R667Q	HDAC9_uc003sue.2_Missense_Mutation_p.R667Q|HDAC9_uc011jyd.1_Missense_Mutation_p.R667Q|HDAC9_uc003sui.2_Missense_Mutation_p.R670Q|HDAC9_uc003suj.2_Missense_Mutation_p.R626Q|HDAC9_uc003sua.1_Missense_Mutation_p.R645Q|HDAC9_uc010kue.1_Missense_Mutation_p.R322Q	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	667	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	ATCTGGTCACGACTGCAAGAA	0.438													7	16					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18869133	18869133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:18869133G>A	uc003suh.2	+	18	2460	c.2419G>A	c.(2419-2421)GAC>AAC	p.D807N	HDAC9_uc003sue.2_Missense_Mutation_p.D807N|HDAC9_uc011jyd.1_Missense_Mutation_p.D807N|HDAC9_uc003sui.2_Missense_Mutation_p.D810N|HDAC9_uc003suj.2_Missense_Mutation_p.D766N|HDAC9_uc003suk.2_Missense_Mutation_p.D55N	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	807	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	ATACTTGAGAGACCAACTAAA	0.378													26	48					0	0	1	0	0
FERD3L	222894	broad.mit.edu	37	7	19184938	19184938	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:19184938G>A	uc003suo.1	-	1	107	c.48C>T	c.(46-48)TTC>TTT	p.F16F	uc003sun.1_RNA	NM_152898	NP_690862	Q96RJ6	FER3L_HUMAN	nephew of atonal 3	16					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			large_intestine(1)	1						GGTCTGCGACGAAGTCCAGCA	0.672													17	47					0	0	1	0	0
TMEM196	256130	broad.mit.edu	37	7	19765192	19765192	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:19765192C>T	uc011jyg.1	-	3	489	c.404G>A	c.(403-405)AGG>AAG	p.R135K	TMEM196_uc003sur.2_RNA	NM_152774	NP_689987	Q5HYL7	TM196_HUMAN	transmembrane protein 196	141						integral to membrane					0						TGAGAACATCCTCCTCTGTTC	0.507													22	42					0	0	1	0	0
MACC1	346389	broad.mit.edu	37	7	20180764	20180764	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20180764G>A	uc003sus.3	-	7	2673	c.2364C>T	c.(2362-2364)GCC>GCT	p.A788A	MACC1_uc010kug.2_Silent_p.A788A	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	788					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						GAAAATCATAGGCAGGTTTCC	0.358													27	79					0	0	1	0	0
MACC1	346389	broad.mit.edu	37	7	20198126	20198126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20198126C>T	uc003sus.3	-	5	2167	c.1858G>A	c.(1858-1860)GAG>AAG	p.E620K	MACC1_uc010kug.2_Missense_Mutation_p.E620K	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	620					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						ATTACTTGCTCCTTTGAAATC	0.358													54	163					0	0	1	0	0
MACC1	346389	broad.mit.edu	37	7	20198585	20198585	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20198585G>A	uc003sus.3	-	5	1708	c.1399C>T	c.(1399-1401)CAT>TAT	p.H467Y	MACC1_uc010kug.2_Missense_Mutation_p.H467Y	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	467					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						AATTGTTGATGAACTACTTCA	0.358													21	58					0	0	1	0	0
MACC1	346389	broad.mit.edu	37	7	20198651	20198651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20198651C>T	uc003sus.3	-	5	1642	c.1333G>A	c.(1333-1335)GAA>AAA	p.E445K	MACC1_uc010kug.2_Missense_Mutation_p.E445K	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	445					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						GTCTTTACTTCAAAATCAGGA	0.353													16	69					0	0	1	0	0
ITGB8	3696	broad.mit.edu	37	7	20406640	20406640	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20406640C>T	uc003suu.2	+	3	924	c.219C>T	c.(217-219)TTC>TTT	p.F73F	ITGB8_uc011jyh.1_5'UTR|ITGB8_uc003sut.2_Silent_p.F73F	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	73	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						AACAGGATTTCATTTCAGGTG	0.303													39	88					0	0	1	0	0
ITGB8	3696	broad.mit.edu	37	7	20434538	20434538	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20434538C>T	uc003suu.2	+	8	1781	c.1076C>T	c.(1075-1077)CCA>CTA	p.P359L	ITGB8_uc011jyh.1_Missense_Mutation_p.P224L|ITGB8_uc003sut.2_Missense_Mutation_p.P359L	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	359	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						CCCCTCTTGCCAGGCACCATT	0.328													8	63					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20668326	20668326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20668326G>A	uc010kuh.2	+	4	361	c.124G>A	c.(124-126)GGA>AGA	p.G42R		NM_001163941	NP_001157413	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	695	Cytoplasmic (Potential).|ABC transporter 2.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						CTTTGCTGATGGACTGGACAT	0.463													7	36					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20682893	20682893	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20682893G>A	uc010kuh.2	+	6	638	c.401G>A	c.(400-402)CGA>CAA	p.R134Q		NM_001163941	NP_001157413	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						ACTGCAGCACGACAGACCAAG	0.418													15	27					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20683155	20683155	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20683155C>T	uc010kuh.2	+	7	815	c.578C>T	c.(577-579)TCG>TTG	p.S193L		NM_001163941	NP_001157413	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TCTACTTTTTCGATTGGCCTG	0.423													28	112					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20725319	20725319	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20725319G>A	uc003suw.3	+	7	1081	c.535G>A	c.(535-537)GAT>AAT	p.D179N	ABCB5_uc010kuh.2_Missense_Mutation_p.D624N	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	179	Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TTCCTGTAAGGATATTAAAAA	0.343													15	43					0	0	1	0	0
RPL23P8	222901	broad.mit.edu	37	7	20867367	20867367	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:20867367G>A	uc011jyj.1	+	1		c.451G>A				NR_026673				Homo sapiens ribosomal protein L23 pseudogene 8 (RPL23P8), non-coding RNA.												0						AGCATTGCGTGATTCTCCAGT	0.388													19	46					0	0	1	0	0
SP4	6671	broad.mit.edu	37	7	21469372	21469372	+	Nonsense_Mutation	SNP	C	T	T	rs1042848		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21469372C>T	uc003sva.2	+	3	770	c.589C>T	c.(589-591)CAG>TAG	p.Q197*	SP4_uc003svb.2_5'UTR	NM_003112	NP_003103	Q02446	SP4_HUMAN	Sp4 transcription factor	197					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(3)|skin(2)	5						GGGTCAAATTCAGCTCATTTC	0.408													39	89					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21628917	21628917	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21628917G>A	uc003svc.2	+	12	2096	c.2065G>A	c.(2065-2067)GAA>AAA	p.E689K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	689	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TATCTATAATGAATGGAAAAG	0.343									Kartagener_syndrome				10	75					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21631030	21631030	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21631030G>A	uc003svc.2	+	14	2533	c.2502G>A	c.(2500-2502)GTG>GTA	p.V834V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	834	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGAAAAACGTGAAGGTGATCC	0.607									Kartagener_syndrome				21	56					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21631159	21631159	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21631159C>T	uc003svc.2	+	14	2662	c.2631C>T	c.(2629-2631)ATC>ATT	p.I877I		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	877	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ACAAGTTAATCCAAGGAGATG	0.443									Kartagener_syndrome				35	74					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21641163	21641163	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21641163C>T	uc003svc.2	+	18	3606	c.3575C>T	c.(3574-3576)CCT>CTT	p.P1192L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1192	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CTCTTTGAACCTCTAAAAGAA	0.413									Kartagener_syndrome				5	35					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21641177	21641177	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21641177A>T	uc003svc.2	+	18	3620	c.3589A>T	c.(3589-3591)ATC>TTC	p.I1197F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1197	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AAAAGAAACGATCACCCTCTT	0.398									Kartagener_syndrome				9	19					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21721262	21721262	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21721262C>T	uc003svc.2	+	31	5473	c.5442C>T	c.(5440-5442)GCC>GCT	p.A1814A		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1814	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ATGTCCATGCCAGAGACGTGG	0.388									Kartagener_syndrome				28	78					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21730468	21730468	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21730468G>A	uc003svc.2	+	36	6062	c.6031G>A	c.(6031-6033)GAA>AAA	p.E2011K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2011	AAA 1 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TGGTCGAACCGAATTACCGGA	0.413									Kartagener_syndrome				31	195					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21742392	21742392	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21742392G>A	uc003svc.2	+	38	6297	c.6266G>A	c.(6265-6267)CGA>CAA	p.R2089Q		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2089					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TCTCTGAAACGAGGAGATAAA	0.398									Kartagener_syndrome				9	22					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21744103	21744103	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21744103G>A	uc003svc.2	+	39	6377	c.6346G>A	c.(6346-6348)GAC>AAC	p.D2116N		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2116					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGTGACTGACGACATCCCAGT	0.453									Kartagener_syndrome				11	19					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21747441	21747441	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21747441G>A	uc003svc.2	+	41	6723	c.6692G>A	c.(6691-6693)TGG>TAG	p.W2231*		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2231	AAA 2 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ACCCGAGAATGGAAAGATGGC	0.378									Kartagener_syndrome				4	44					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21750215	21750215	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21750215G>A	uc003svc.2	+	42	6780	c.6749G>A	c.(6748-6750)CGA>CAA	p.R2250Q		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2250	AAA 2 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TCCATTCTACGAGAACAAGCA	0.343									Kartagener_syndrome				9	37					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21789343	21789343	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21789343C>T	uc003svc.2	+	54	8773	c.8742C>T	c.(8740-8742)CCC>CCT	p.P2914P		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2914	AAA 4 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGAACATGCCCACTGTGTTCC	0.458									Kartagener_syndrome				11	49					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21789388	21789388	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21789388C>T	uc003svc.2	+	54	8818	c.8787C>T	c.(8785-8787)TTC>TTT	p.F2929F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2929	AAA 4 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ATGAGAGCTTCCTCGTGCTGA	0.438									Kartagener_syndrome				20	45					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21805064	21805064	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21805064C>T	uc003svc.2	+	56	9011	c.8980C>T	c.(8980-8982)CCA>TCA	p.P2994S		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2994	AAA 4 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GTGTTTCTCTCCAGTTGGTCG	0.502									Kartagener_syndrome				49	106					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21840889	21840889	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21840889G>T	uc003svc.2	+	63	10213	c.10182G>T	c.(10180-10182)GAG>GAT	p.E3394D		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3394	Potential.|Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGGAACTTGAGGCAAGTTAAA	0.358									Kartagener_syndrome				3	25					0.150653	0.150659	1	1	0
DNAH11	8701	broad.mit.edu	37	7	21856193	21856193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21856193G>A	uc003svc.2	+	65	10493	c.10462G>A	c.(10462-10464)GAA>AAA	p.E3488K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3488	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AATGTCCACCGAAAATGCCGC	0.493									Kartagener_syndrome				15	27					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21882208	21882208	+	Missense_Mutation	SNP	C	T	T	rs72657399		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21882208C>T	uc003svc.2	+	67	10790	c.10759C>T	c.(10759-10761)CGC>TGC	p.R3587C		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3587	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CAAGAACTTTCGCCTTATCCT	0.393									Kartagener_syndrome				12	36					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21901519	21901519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:21901519G>A	uc003svc.2	+	70	11303	c.11272G>A	c.(11272-11274)GAA>AAA	p.E3758K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3758					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TGACAAGGTGGAAGACATGCA	0.502									Kartagener_syndrome				16	74					0	0	1	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22202044	22202044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:22202044C>T	uc003svg.2	-	13	1253	c.940G>A	c.(940-942)GAA>AAA	p.E314K	RAPGEF5_uc011jyl.1_5'UTR	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	164	N-terminal Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TGTTCATCTTCAGGTAACCAG	0.343													21	61					0	0	1	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22202047	22202047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:22202047G>A	uc003svg.2	-	13	1250	c.937C>T	c.(937-939)CCT>TCT	p.P313S	RAPGEF5_uc011jyl.1_5'UTR	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	163	N-terminal Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TCATCTTCAGGTAACCAGTCT	0.348													20	59					0	0	1	0	0
MGC87042	256227	broad.mit.edu	37	7	22533207	22533207	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:22533207G>A	uc003svh.2	-	3	373	c.276C>T	c.(274-276)ATC>ATT	p.I92I	MGC87042_uc010kum.1_Silent_p.I111I			Q6NZ63	STEAL_HUMAN	SubName: Full=cDNA FLJ60218, highly similar to Six transmembrane epithelial antigen ofprostate 1;	92						integral to membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0						TGATGACCAGGATTGGAATTT	0.393													19	97					0	0	1	0	0
IL6	3569	broad.mit.edu	37	7	22767223	22767223	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:22767223C>T	uc011jyn.1	+	3	639	c.180C>T	c.(178-180)ATC>ATT	p.I60I	uc010kun.1_RNA|IL6_uc011jyo.1_Silent_p.I60I|IL6_uc011jyp.1_Intron|IL6_uc003svj.3_Silent_p.I60I|IL6_uc011jyq.1_Silent_p.I114I	NM_000600	NP_000591	P05231	IL6_HUMAN	interleukin 6 precursor	60					acute-phase response|cellular response to hydrogen peroxide|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|defense response to virus|endocrine pancreas development|glucagon secretion|hepatic immune response|interleukin-6-mediated signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of chemokine biosynthetic process|negative regulation of collagen biosynthetic process|negative regulation of fat cell differentiation|negative regulation of lipid storage|neuron projection development|neutrophil apoptosis|platelet activation|positive regulation of acute inflammatory response|positive regulation of anti-apoptosis|positive regulation of B cell activation|positive regulation of chemokine production|positive regulation of immunoglobulin secretion|positive regulation of interleukin-6 production|positive regulation of osteoblast differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of smooth muscle cell proliferation|positive regulation of T cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of translation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of vascular endothelial growth factor production|response to glucocorticoid stimulus|response to peptidoglycan	extracellular space|interleukin-6 receptor complex	cytokine activity|growth factor activity|interleukin-6 receptor binding				0					Arsenic trioxide(DB01169)|Bicalutamide(DB01128)|Ginseng(DB01404)|Simvastatin(DB00641)	TTCGGTACATCCTCGACGGCA	0.592													23	55					0	0	1	0	0
FAM126A	84668	broad.mit.edu	37	7	22999935	22999935	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:22999935G>A	uc003svm.3	-	10	1186	c.931C>T	c.(931-933)CGA>TGA	p.R311*	FAM126A_uc003svn.3_Nonsense_Mutation_p.R167*	NM_032581	NP_115970	Q9BYI3	HYCCI_HUMAN	family with sequence similarity 126, member A	311						cytoplasm|membrane	signal transducer activity			central_nervous_system(1)	1						CTTGATATTCGAGAGGAAGTT	0.388													41	226					0	0	1	0	0
CLK2P	1197	broad.mit.edu	37	7	23625451	23625451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23625451C>T	uc003swk.2	-	1	696	c.46G>A	c.(46-48)GAG>AAG	p.E16K		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						CCCAGAAGCTCCAAGGAGATA	0.532													14	35					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23775187	23775187	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23775187G>A	uc003sws.3	+	7	581	c.514G>A	c.(514-516)GAA>AAA	p.E172K	STK31_uc003swt.3_Missense_Mutation_p.E149K|STK31_uc011jze.1_Missense_Mutation_p.E172K|STK31_uc010kuq.2_Missense_Mutation_p.E149K	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	172							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						CTTGATTTTTGAAAAGGAAAT	0.388													40	102					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23776524	23776524	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23776524G>A	uc003sws.3	+	8	911	c.844G>A	c.(844-846)GAA>AAA	p.E282K	STK31_uc003swt.3_Missense_Mutation_p.E259K|STK31_uc011jze.1_Missense_Mutation_p.E282K|STK31_uc010kuq.2_Missense_Mutation_p.E259K	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	282							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTTTTATAGGGAAAGTTTGGC	0.323													16	48					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23792369	23792369	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23792369C>T	uc003sws.3	+	9	1118	c.1051C>T	c.(1051-1053)CAC>TAC	p.H351Y	STK31_uc003swt.3_Missense_Mutation_p.H328Y|STK31_uc011jze.1_Missense_Mutation_p.H351Y|STK31_uc010kuq.2_Missense_Mutation_p.H328Y	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	351	Potential.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTTGACTAACCACTTAGAATA	0.353													18	58					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23808660	23808660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23808660G>A	uc003sws.3	+	12	1530	c.1463G>A	c.(1462-1464)GGA>GAA	p.G488E	STK31_uc003swt.3_Missense_Mutation_p.G465E|STK31_uc011jze.1_Missense_Mutation_p.G488E|STK31_uc010kuq.2_Missense_Mutation_p.G465E	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	488							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GCCAAAGAAGGAGCAAATTCT	0.358													41	120					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23809268	23809268	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23809268C>T	uc003sws.3	+	13	1673	c.1606C>T	c.(1606-1608)CTA>TTA	p.L536L	STK31_uc003swt.3_Silent_p.L513L|STK31_uc011jze.1_Silent_p.L536L|STK31_uc010kuq.2_Silent_p.L513L	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	536							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GGTTTTTGACCTATCTGTGGA	0.363													10	184					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23809324	23809324	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23809324C>T	uc003sws.3	+	13	1729	c.1662C>T	c.(1660-1662)ATC>ATT	p.I554I	STK31_uc003swt.3_Silent_p.I531I|STK31_uc011jze.1_Silent_p.I554I|STK31_uc010kuq.2_Silent_p.I531I	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	554							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTGATGAAATCCTAGAGAAGA	0.373													68	181					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23810624	23810624	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23810624G>A	uc003sws.3	+	14	1781	c.1714G>A	c.(1714-1716)GAT>AAT	p.D572N	STK31_uc003swt.3_Missense_Mutation_p.D549N|STK31_uc011jze.1_Missense_Mutation_p.D572N|STK31_uc010kuq.2_Missense_Mutation_p.D549N	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	572							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTTCATTTAGGATCAAGGTGA	0.338													41	88					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23811825	23811825	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23811825C>T	uc003sws.3	+	15	1960	c.1893C>T	c.(1891-1893)TCC>TCT	p.S631S	STK31_uc003swt.3_Silent_p.S608S|STK31_uc011jze.1_Silent_p.S631S|STK31_uc010kuq.2_Silent_p.S608S	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	631							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						ACTTGCTATCCATTAAGAAGA	0.313													26	67					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23826227	23826227	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23826227C>T	uc003sws.3	+	19	2442	c.2375C>T	c.(2374-2376)CCA>CTA	p.P792L	STK31_uc003swt.3_Missense_Mutation_p.P769L|STK31_uc011jze.1_Missense_Mutation_p.P792L|STK31_uc010kuq.2_Missense_Mutation_p.P769L|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	792	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GGGTTACTGCCATTGATATTC	0.378													25	81					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23827677	23827677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23827677C>T	uc003sws.3	+	21	2633	c.2566C>T	c.(2566-2568)CAT>TAT	p.H856Y	STK31_uc003swt.3_Missense_Mutation_p.H833Y|STK31_uc011jze.1_Missense_Mutation_p.H856Y|STK31_uc010kuq.2_Missense_Mutation_p.H833Y|STK31_uc003swv.1_Missense_Mutation_p.H22Y	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	856	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TGGATCACTTCATCAGAACAA	0.353													47	82					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23871841	23871841	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:23871841C>T	uc003sws.3	+	24	2983	c.2916C>T	c.(2914-2916)TTC>TTT	p.F972F	STK31_uc003swt.3_Silent_p.F949F|STK31_uc011jze.1_Silent_p.F949F|STK31_uc010kuq.2_Silent_p.F949F|STK31_uc003swv.1_Silent_p.F138F	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	972	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						CTGAATGTTTCTTGATGCCAA	0.353													24	69					0	0	1	0	0
MPP6	51678	broad.mit.edu	37	7	24663358	24663358	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:24663358C>T	uc003swx.2	+	3	371	c.72C>T	c.(70-72)TTC>TTT	p.F24F	MPP6_uc003swy.2_Silent_p.F24F	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	24	L27 1.				protein complex assembly		protein binding				0						ACCTAATTTTCCTCAAGGGAA	0.343													25	61					0	0	1	0	0
MPP6	51678	broad.mit.edu	37	7	24681389	24681389	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:24681389G>T	uc003swx.2	+	4	471	c.172G>T	c.(172-174)GAA>TAA	p.E58*	MPP6_uc003swy.2_Nonsense_Mutation_p.E58*	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	58	L27 2.				protein complex assembly		protein binding				0						CAATAACTTGGAATTAGTCAA	0.338													32	79					2.08457e-15	2.0942e-15	1	1	0
MPP6	51678	broad.mit.edu	37	7	24689299	24689299	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:24689299G>A	uc003swx.2	+	5	638	c.339G>A	c.(337-339)ATG>ATA	p.M113I	MPP6_uc003swy.2_Missense_Mutation_p.M113I	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	113					protein complex assembly		protein binding				0						GCCCAGAAATGAATAATTCTT	0.383													24	84					0	0	1	0	0
MPP6	51678	broad.mit.edu	37	7	24689314	24689314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:24689314C>T	uc003swx.2	+	5	653	c.354C>T	c.(352-354)ATC>ATT	p.I118I	MPP6_uc003swy.2_Silent_p.I118I	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	118					protein complex assembly		protein binding				0						ATTCTTCTATCAATAATCAGT	0.378													29	83					0	0	1	0	0
OSBPL3	26031	broad.mit.edu	37	7	24874210	24874210	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:24874210C>T	uc003sxf.2	-	15	2046	c.1641G>A	c.(1639-1641)GTG>GTA	p.V547V	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Silent_p.V511V|OSBPL3_uc003sxh.2_Silent_p.V516V|OSBPL3_uc003sxi.2_Silent_p.V480V|OSBPL3_uc003sxj.1_Silent_p.V276V|OSBPL3_uc003sxk.1_Silent_p.V245V	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	547					lipid transport		lipid binding|protein binding			skin(1)	1						CGTTCAGCTCCACCGGCATGG	0.637													26	56					0	0	1	0	0
NFE2L3	9603	broad.mit.edu	37	7	26224916	26224916	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:26224916G>A	uc003sxq.2	+	4	1870	c.1598G>A	c.(1597-1599)AGA>AAA	p.R533K		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	533					transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						GACACAGATAGAAACTTGAGC	0.428													34	83					0	0	1	0	0
SKAP2	8935	broad.mit.edu	37	7	26766566	26766566	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:26766566G>A	uc003syc.2	-	7	822	c.529C>T	c.(529-531)CTA>TTA	p.L177L	SKAP2_uc011jzi.1_Silent_p.L5L|SKAP2_uc011jzj.1_Silent_p.L162L	NM_003930	NP_003921	O75563	SKAP2_HUMAN	src kinase associated phosphoprotein 2	177	PH.				B cell activation|cell junction assembly|protein complex assembly|signal transduction	cytosol|plasma membrane	SH3/SH2 adaptor activity			pancreas(1)	1						TCCTTTCTTAGAGTGTTATTC	0.323													5	59					0	0	1	0	0
SKAP2	8935	broad.mit.edu	37	7	26778453	26778453	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:26778453G>A	uc003syc.2	-	6	723	c.430C>T	c.(430-432)CTC>TTC	p.L144F	SKAP2_uc011jzi.1_5'UTR|SKAP2_uc011jzj.1_Missense_Mutation_p.L129F	NM_003930	NP_003921	O75563	SKAP2_HUMAN	src kinase associated phosphoprotein 2	144	PH.				B cell activation|cell junction assembly|protein complex assembly|signal transduction	cytosol|plasma membrane	SH3/SH2 adaptor activity			pancreas(1)	1						GTTTTACTGAGAGCACACCAC	0.313													42	75					0	0	1	0	0
HOXA1	3198	broad.mit.edu	37	7	27134413	27134413	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27134413C>T	uc003sye.2	-	2	748	c.654G>A	c.(652-654)GGG>GGA	p.G218G	HOXA1_uc003syd.2_3'UTR|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	218						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						CTCCAACTTTCCCTGGGGCAA	0.493													26	42					0	0	1	0	0
HOXA1	3198	broad.mit.edu	37	7	27135420	27135420	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27135420G>A	uc003sye.2	-	1	206	c.112C>T	c.(112-114)CAG>TAG	p.Q38*	HOXA1_uc003syd.2_Nonsense_Mutation_p.Q38*|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	38						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						GCGCACGACTGGAAAGTTGTA	0.547											OREG0003750	type=REGULATORY REGION|Gene=BC031342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	46	109					0	0	1	0	0
HOXA3	3200	broad.mit.edu	37	7	27148074	27148074	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27148074T>C	uc011jzl.1	-	3	992	c.792A>G	c.(790-792)CCA>CCG	p.P264P	HOXA3_uc011jzk.1_Silent_p.P106P|HOXA3_uc003syk.2_Silent_p.P264P	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	264					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						GGCTGCGACTTGGAGACTGGC	0.602													50	129					0	0	1	0	0
HOXA5	3202	broad.mit.edu	37	7	27182802	27182802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27182802C>T	uc003syn.1	-	1	486	c.425G>A	c.(424-426)GGG>GAG	p.G142E		NM_019102	NP_061975	P20719	HXA5_HUMAN	homeobox A5	142					negative regulation of angiogenesis|negative regulation of erythrocyte differentiation|positive regulation of apoptosis|positive regulation of myeloid cell differentiation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGTGCCAACCCCCTCTCTGCT	0.736													24	60					0	0	1	0	0
HOXA5	3202	broad.mit.edu	37	7	27183048	27183048	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27183048C>T	uc003syn.1	-	1	240	c.179G>A	c.(178-180)GGC>GAC	p.G60D		NM_019102	NP_061975	P20719	HXA5_HUMAN	homeobox A5	60					negative regulation of angiogenesis|negative regulation of erythrocyte differentiation|positive regulation of apoptosis|positive regulation of myeloid cell differentiation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTGGCCGGAGCCCGAGCGGCC	0.697													15	41					0	0	1	0	0
HOXA6	3203	broad.mit.edu	37	7	27187241	27187241	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27187241C>T	uc003syo.1	-	1	128	c.128G>A	c.(127-129)GGG>GAG	p.G43E	uc003syp.1_Intron|HOXA6_uc003syq.1_Intron	NM_024014	NP_076919	P31267	HXA6_HUMAN	homeobox A6	43						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						ACTCGACGCCCCGTACGAGGC	0.657													19	41					0	0	1	0	0
HOXA9	3205	broad.mit.edu	37	7	27204563	27204563	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27204563C>T	uc003syt.2	-	1	587	c.514G>A	c.(514-516)GAA>AAA	p.E172K		NM_152739	NP_689952	P31269	HXA9_HUMAN	homeobox A9	172							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2						AAGGCGCCTTCGCTGGGTTGT	0.552			T	NUP98|MSI2	AML*								18	57					0	0	1	0	0
HOXA13	3209	broad.mit.edu	37	7	27238925	27238925	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27238925G>A	uc003szb.1	-	1	801	c.772C>T	c.(772-774)CTC>TTC	p.L258F	uc003szc.1_5'Flank	NM_000522	NP_000513	P31271	HXA13_HUMAN	homeobox A13	258					skeletal system development	nucleus	sequence-specific DNA binding			breast(1)	1						GGGCCCCCGAGGCCCGGCACC	0.657			T	NUP98	AML								13	31					0	0	1	0	0
EVX1	2128	broad.mit.edu	37	7	27284711	27284711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27284711G>A	uc003szd.1	+	2	958	c.472G>A	c.(472-474)GAG>AAG	p.E158K	EVX1_uc011jzn.1_5'UTR|EVX1_uc010kuy.1_Silent_p.A139A	NM_001989	NP_001980	P49640	EVX1_HUMAN	even-skipped homeobox 1	158						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						CGGAGGGAGCGAGACCCCCAA	0.667													31	54					0	0	1	0	0
HIBADH	11112	broad.mit.edu	37	7	27582693	27582693	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27582693G>A	uc003szf.2	-	5	706	c.511C>T	c.(511-513)CTC>TTC	p.L171F	HIBADH_uc003szg.2_Missense_Mutation_p.L122F|HIBADH_uc003szh.2_Missense_Mutation_p.L70F|HIBADH_uc003szi.2_Missense_Mutation_p.L122F	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	171					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	ATAAACGTGAGGTTCCCAGAT	0.458													24	42					0	0	1	0	0
HIBADH	11112	broad.mit.edu	37	7	27689131	27689131	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:27689131G>A	uc003szf.2	-	2	408	c.213C>T	c.(211-213)TTC>TTT	p.F71F	HIBADH_uc003szg.2_Silent_p.F22F|HIBADH_uc003szh.2_Intron|HIBADH_uc003szi.2_Silent_p.F22F	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	71					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	AGGCATCAGGGAACACATCAT	0.363													22	43					0	0	1	0	0
LOC402644	402644	broad.mit.edu	37	7	28319080	28319080	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:28319080C>T	uc010kuz.1	-	1	239	c.239G>A	c.(238-240)GGG>GAG	p.G80E		NM_001126493	NP_001119965			hypothetical protein LOC402644												0						AAATTTCTCCCCGTAGATGGA	0.448													40	91					0	0	1	0	0
LOC402644	402644	broad.mit.edu	37	7	28319219	28319219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:28319219C>T	uc010kuz.1	-	1	100	c.100G>A	c.(100-102)GAA>AAA	p.E34K		NM_001126493	NP_001119965			hypothetical protein LOC402644												0						CGAACGTTTTCTGCTGTCTTT	0.468													37	90					0	0	1	0	0
CREB5	9586	broad.mit.edu	37	7	28534587	28534587	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:28534587C>T	uc003szq.2	+	3	529	c.139C>T	c.(139-141)CCT>TCT	p.P47S	CREB5_uc003szo.2_Missense_Mutation_p.P14S|CREB5_uc003szr.2_Missense_Mutation_p.P40S	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	47					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						TTTGAAGTTTCCTTCAATAAA	0.408													38	111					0	0	1	0	0
CREB5	9586	broad.mit.edu	37	7	28547306	28547306	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:28547306C>T	uc003szq.2	+	4	632	c.242C>T	c.(241-243)TCC>TTC	p.S81F	CREB5_uc003szo.2_Missense_Mutation_p.S48F|CREB5_uc003szr.2_Missense_Mutation_p.S74F	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	81					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						CTGGACTGCTCCCTGGAGCAC	0.552													58	151					0	0	1	0	0
TRIL	9865	broad.mit.edu	37	7	28996398	28996398	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:28996398G>A	uc003szt.2	-	3	1632	c.1265C>T	c.(1264-1266)TCC>TTC	p.S422F	uc003szu.1_5'Flank	NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	422	Extracellular (Potential).				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						AGCGGTCAGGGAAGCTGAGGG	0.687													18	69					0	0	1	0	0
TRIL	9865	broad.mit.edu	37	7	28996799	28996799	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:28996799C>T	uc003szt.2	-	3	1231	c.864G>A	c.(862-864)CGG>CGA	p.R288R	uc003szu.1_5'Flank	NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	288	Extracellular (Potential).|LRR 10.				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						GCTGGCTCAGCCGATTACCCT	0.692													3	16					0	0	1	0	0
TRIL	9865	broad.mit.edu	37	7	28997133	28997133	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:28997133G>A	uc003szt.2	-	3	897	c.530C>T	c.(529-531)CCC>CTC	p.P177L	uc003szu.1_5'Flank	NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	177	Extracellular (Potential).|LRR 5.				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						GTTGCCCAAGGGAGCGAAGAC	0.652													11	33					0	0	1	0	0
TRIL	9865	broad.mit.edu	37	7	28997319	28997319	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:28997319C>T	uc003szt.2	-	3	711	c.344G>A	c.(343-345)GGG>GAG	p.G115E	uc003szu.1_5'Flank	NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	115	LRR 3.|Extracellular (Potential).				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						GAGGTTGTTCCCCAGGTACAG	0.657													4	11					0	0	1	0	0
CPVL	54504	broad.mit.edu	37	7	29132281	29132281	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:29132281C>T	uc003szv.2	-	6	619	c.500G>A	c.(499-501)GGA>GAA	p.G167E	CPVL_uc003szw.2_Missense_Mutation_p.G167E|CPVL_uc003szx.2_Missense_Mutation_p.G167E	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	167					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						GACTGCATATCCGTGGGTATC	0.438													10	55					0	0	1	0	0
CPVL	54504	broad.mit.edu	37	7	29160613	29160613	+	Missense_Mutation	SNP	C	T	T	rs148332481	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:29160613C>T	uc003szv.2	-	2	184	c.65G>A	c.(64-66)GGG>GAG	p.G22E	CPVL_uc003szw.2_Missense_Mutation_p.G22E|CPVL_uc003szx.2_Missense_Mutation_p.G22E	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	22					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						GCGAAACAGCCCATCACAGGG	0.488													34	67					0	0	1	0	0
LOC646762	646762	broad.mit.edu	37	7	29690529	29690529	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:29690529G>A	uc003tad.3	-	2		c.793C>T				NR_024278				Homo sapiens cDNA: FLJ23070 fis, clone LNG05629.												0						TGATCGCCAAGACCCTTCTTC	0.582													5	10					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	29736612	29736612	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:29736612C>T	uc003tah.1	+	5		c.431C>T								Homo sapiens DPY-19-like 2 pseudogene 3 (DPY19L2P3) pseudogene mRNA, complete sequence.																		GAAAGTTTTTCCTATCCATTT	0.313													10	32					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	29773104	29773104	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:29773104G>A	uc003tai.2	+	4	236	c.116G>A	c.(115-117)CGA>CAA	p.R39Q						Homo sapiens DPY-19-like 2 pseudogene 3 (DPY19L2P3) pseudogene mRNA, complete sequence.																		ACATATAGTCGAAAATCTGCC	0.269													31	82					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	29781859	29781859	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:29781859C>T	uc003tai.2	+	5	423	c.303C>T	c.(301-303)CTC>CTT	p.L101L						Homo sapiens DPY-19-like 2 pseudogene 3 (DPY19L2P3) pseudogene mRNA, complete sequence.																		ATGCCAGGCTCGAAGATGCCA	0.468													4	31					0	0	1	0	0
WIPF3	644150	broad.mit.edu	37	7	29924037	29924037	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:29924037C>T	uc003taj.1	+	4	927	c.927C>T	c.(925-927)CCC>CCT	p.P309P		NM_001080529	NP_001073998	A6NGB9	WIPF3_HUMAN	WAS/WASL interacting protein family, member 3	309										ovary(1)	1						CTTCTTTGCCCGCGCCCCCTT	0.687													5	7					0	0	1	0	0
SCRN1	9805	broad.mit.edu	37	7	29976195	29976195	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:29976195G>A	uc010kvp.2	-	5	1086	c.882C>T	c.(880-882)TTC>TTT	p.F294F	SCRN1_uc011jzy.1_Silent_p.F226F|SCRN1_uc003tak.2_Silent_p.F294F|SCRN1_uc011jzz.1_Silent_p.F294F|SCRN1_uc011kaa.1_Silent_p.F314F|SCRN1_uc011jzw.1_Silent_p.F161F|SCRN1_uc011jzx.1_Silent_p.F117F	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	294					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						GGGTTCCAGTGAAGTAGTGAA	0.522													37	149					0	0	1	0	0
SCRN1	9805	broad.mit.edu	37	7	29980386	29980386	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:29980386C>T	uc010kvp.2	-	4	855	c.651G>A	c.(649-651)GAG>GAA	p.E217E	SCRN1_uc011jzy.1_Silent_p.E149E|SCRN1_uc003tak.2_Silent_p.E217E|SCRN1_uc011jzz.1_Silent_p.E217E|SCRN1_uc011kaa.1_Silent_p.E237E|SCRN1_uc011jzw.1_Intron|SCRN1_uc011jzx.1_Silent_p.E40E	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	217					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						TGAACTCGCCCTCTCCCGTCC	0.493													56	156					0	0	1	0	0
GARS	2617	broad.mit.edu	37	7	30671904	30671904	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:30671904G>A	uc003tbm.2	+	16	2302	c.1945G>A	c.(1945-1947)GAT>AAT	p.D649N		NM_002047	NP_002038	P41250	SYG_HUMAN	glycyl-tRNA synthetase	649					cell death|diadenosine tetraphosphate biosynthetic process|glycyl-tRNA aminoacylation	cytosol|mitochondrial matrix|soluble fraction	ATP binding|glycine-tRNA ligase activity|protein dimerization activity			ovary(1)	1					Glycine(DB00145)	CAAAGTAGACGATTCCTCTGG	0.448													26	72					0	0	1	0	0
FAM188B	84182	broad.mit.edu	37	7	30830929	30830929	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:30830929C>T	uc003tbt.2	+	5	889	c.812C>T	c.(811-813)TCC>TTC	p.S271F	FAM188B_uc010kwe.2_Missense_Mutation_p.S242F	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	271											0						TCCAGGACCTCCCTGGGTCAG	0.607													39	74					0	0	1	0	0
FAM188B	84182	broad.mit.edu	37	7	30898886	30898886	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:30898886C>T	uc003tbt.2	+	13	1768	c.1691C>T	c.(1690-1692)CCC>CTC	p.P564L	FAM188B_uc010kwe.2_Missense_Mutation_p.P535L|AQP1_uc011kac.1_5'UTR|FAM188B_uc003tbu.2_Missense_Mutation_p.P84L	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	564											0						GAAGTGGGCCCCTATGGCTGC	0.473													13	86					0	0	1	0	0
AQP1	358	broad.mit.edu	37	7	30961695	30961695	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:30961695G>A	uc003tbv.1	+	2	456	c.399G>A	c.(397-399)GTG>GTA	p.V133V	AQP1_uc011kac.1_Silent_p.V193V|AQP1_uc010kwf.1_Silent_p.V50V|AQP1_uc010kwg.1_Silent_p.V14V|AQP1_uc010kwh.1_Silent_p.V82V	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	133	Extracellular.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	CTGATGGTGTGAACTCGGGCC	0.652													29	77					0	0	1	0	0
AQP1	358	broad.mit.edu	37	7	30961728	30961728	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:30961728C>T	uc003tbv.1	+	2	489	c.432C>T	c.(430-432)ATC>ATT	p.I144I	AQP1_uc011kac.1_Silent_p.I204I|AQP1_uc010kwf.1_Silent_p.I61I|AQP1_uc010kwg.1_Silent_p.I25I|AQP1_uc010kwh.1_Silent_p.I93I	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	144	Helical; Name=Helix 4.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	TCGAGATCATCGGGACCCTCC	0.657													16	67					0	0	1	0	0
AQP1	358	broad.mit.edu	37	7	30962216	30962216	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:30962216C>T	uc003tbv.1	+	3	644	c.587C>T	c.(586-588)TCC>TTC	p.S196F	AQP1_uc011kac.1_Missense_Mutation_p.S256F|AQP1_uc010kwf.1_Missense_Mutation_p.S113F|AQP1_uc010kwg.1_Missense_Mutation_p.S77F|AQP1_uc010kwh.1_Missense_Mutation_p.S145F	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	196					ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	CCTGCTCGGTCCTTTGGCTCC	0.408													97	263					0	0	1	0	0
AQP1	358	broad.mit.edu	37	7	30963129	30963129	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:30963129C>T	uc003tbv.1	+	4	752	c.695C>T	c.(694-696)GCC>GTC	p.A232V	AQP1_uc011kac.1_Missense_Mutation_p.A292V|AQP1_uc010kwf.1_Missense_Mutation_p.A149V|AQP1_uc010kwg.1_Missense_Mutation_p.A113V|AQP1_uc010kwh.1_Missense_Mutation_p.A181V	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	232	Cytoplasmic.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	TTCATCCTGGCCCCACGCAGC	0.597													19	28					0	0	1	0	0
AQP1	358	broad.mit.edu	37	7	30963132	30963132	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:30963132C>T	uc003tbv.1	+	4	755	c.698C>T	c.(697-699)CCA>CTA	p.P233L	AQP1_uc011kac.1_Missense_Mutation_p.P293L|AQP1_uc010kwf.1_Missense_Mutation_p.P150L|AQP1_uc010kwg.1_Missense_Mutation_p.P114L|AQP1_uc010kwh.1_Missense_Mutation_p.P182L	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	233	Cytoplasmic.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	ATCCTGGCCCCACGCAGCAGT	0.597													19	28					0	0	1	0	0
AQP1	358	broad.mit.edu	37	7	30963185	30963185	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:30963185G>A	uc003tbv.1	+	4	808	c.751G>A	c.(751-753)GAG>AAG	p.E251K	AQP1_uc011kac.1_Missense_Mutation_p.E311K|AQP1_uc010kwf.1_Missense_Mutation_p.E168K|AQP1_uc010kwg.1_Missense_Mutation_p.E132K|AQP1_uc010kwh.1_Missense_Mutation_p.E200K	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	251	Cytoplasmic.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	CGGCCAGGTGGAGGAGTATGA	0.627													8	23					0	0	1	0	0
GHRHR	2692	broad.mit.edu	37	7	31008470	31008470	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31008470G>A	uc003tbx.2	+	2	127	c.79G>A	c.(79-81)GAA>AAA	p.E27K	GHRHR_uc003tbw.1_Missense_Mutation_p.E27K|GHRHR_uc003tby.2_5'Flank|GHRHR_uc003tbz.2_5'Flank	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor	27	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	CATGCACCCAGAATGTGACTT	0.532													12	48					0	0	1	0	0
GHRHR	2692	broad.mit.edu	37	7	31013635	31013635	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31013635C>T	uc003tbx.2	+	7	681	c.633C>T	c.(631-633)TTC>TTT	p.F211F	GHRHR_uc003tbw.1_Silent_p.F211F|GHRHR_uc003tby.2_Silent_p.F147F|GHRHR_uc003tbz.2_Intron	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor	211	Helical; Name=3; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	CCTCCCATTTCGCCACCATGA	0.627													19	78					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31124949	31124949	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31124949C>T	uc003tca.1	+	9	784	c.561C>T	c.(559-561)TTC>TTT	p.F187F	ADCYAP1R1_uc003tcb.1_Silent_p.F166F|ADCYAP1R1_uc003tcc.1_Silent_p.F187F|ADCYAP1R1_uc003tcd.1_Silent_p.F187F|ADCYAP1R1_uc003tce.1_Silent_p.F187F|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	187	Helical; Name=2; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						CACGCAACTTCATCCACATGA	0.532													33	103					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31127291	31127291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31127291C>T	uc003tca.1	+	12	1158	c.935C>T	c.(934-936)CCT>CTT	p.P312L	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.P291L|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.P312L|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.P312L|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.P312L|ADCYAP1R1_uc003tcf.1_Missense_Mutation_p.P14L	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	312	Helical; Name=5; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						ATCAAAGGCCCTGTGGTTGGC	0.517													24	64					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31146148	31146148	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31146148G>A	uc003tca.1	+	16	1480	c.1257G>A	c.(1255-1257)AAG>AAA	p.K419K	ADCYAP1R1_uc003tcb.1_Silent_p.K398K|ADCYAP1R1_uc003tcc.1_Silent_p.K447K|ADCYAP1R1_uc003tcd.1_Silent_p.K447K|ADCYAP1R1_uc003tce.1_Silent_p.K446K|uc003tcg.2_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	419	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						GAAGCTGGAAGGTGAACCGTT	0.592													25	49					0	0	1	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378278	31378278	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31378278G>A	uc003tch.2	-	2	958	c.605C>T	c.(604-606)TCA>TTA	p.S202L		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	202					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						AGAGTAGGGTGACCTTGTGTG	0.557													19	79					0	0	1	0	0
C7orf16	10842	broad.mit.edu	37	7	31735138	31735138	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31735138G>A	uc003tcl.2	+	3	296	c.138G>A	c.(136-138)AAG>AAA	p.K46K	C7orf16_uc011kaf.1_Intron	NM_006658	NP_006649	O96001	GSUB_HUMAN	G-substrate isoform 1	46					behavior|central nervous system development|intracellular protein kinase cascade|protein phosphorylation	soluble fraction				ovary(2)|central_nervous_system(1)	3			GBM - Glioblastoma multiforme(11;0.216)			AGCCTAGAAAGGGAAAAAATG	0.388													31	98					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31793040	31793040	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31793040C>T	uc003tcm.1	-	18	2557	c.2088G>A	c.(2086-2088)ATG>ATA	p.M696I	PDE1C_uc003tcn.1_Missense_Mutation_p.M696I|PDE1C_uc003tco.1_Missense_Mutation_p.M756I	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	696					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			GAATCTTTTTCATTTTGATCC	0.468													102	284					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31864570	31864570	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31864570G>A	uc003tcm.1	-	13	1786	c.1317C>T	c.(1315-1317)TTC>TTT	p.F439F	PDE1C_uc003tcn.1_Silent_p.F439F|PDE1C_uc003tco.1_Silent_p.F499F|PDE1C_uc003tcr.2_Silent_p.F439F|PDE1C_uc003tcs.2_Silent_p.F439F	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	439	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TAAGCACAGTGAAGGTGGGTT	0.473													49	95					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31864577	31864577	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31864577G>A	uc003tcm.1	-	13	1779	c.1310C>T	c.(1309-1311)CCC>CTC	p.P437L	PDE1C_uc003tcn.1_Missense_Mutation_p.P437L|PDE1C_uc003tco.1_Missense_Mutation_p.P497L|PDE1C_uc003tcr.2_Missense_Mutation_p.P437L|PDE1C_uc003tcs.2_Missense_Mutation_p.P437L	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	437	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			AGTGAAGGTGGGTTCCACGAT	0.458													13	113					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31876800	31876800	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31876800G>A	uc003tcm.1	-	11	1666	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	PDE1C_uc003tcn.1_Silent_p.F399F|PDE1C_uc003tco.1_Silent_p.F459F|PDE1C_uc003tcr.2_Silent_p.F399F|PDE1C_uc003tcs.2_Silent_p.F399F	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	399	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			GTACCTGTCTGAAGAACTCCT	0.428													32	68					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31876828	31876828	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31876828C>T	uc003tcm.1	-	11	1638	c.1169G>A	c.(1168-1170)TGG>TAG	p.W390*	PDE1C_uc003tcn.1_Nonsense_Mutation_p.W390*|PDE1C_uc003tco.1_Nonsense_Mutation_p.W450*|PDE1C_uc003tcr.2_Nonsense_Mutation_p.W390*|PDE1C_uc003tcs.2_Nonsense_Mutation_p.W390*	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	390	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TGACATTGTCCAGCGATGATG	0.428													17	83					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31918627	31918627	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31918627G>A	uc003tcm.1	-	4	876	c.407C>T	c.(406-408)GCT>GTT	p.A136V	PDE1C_uc003tcn.1_Missense_Mutation_p.A136V|PDE1C_uc003tco.1_Missense_Mutation_p.A196V|PDE1C_uc003tcr.2_Missense_Mutation_p.A136V|PDE1C_uc003tcs.2_Missense_Mutation_p.A136V	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	136					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			AAATATCCCAGCCTGCACTGC	0.507													25	134					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31920407	31920407	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:31920407C>T	uc003tcm.1	-	3	664	c.195G>A	c.(193-195)TTG>TTA	p.L65L	PDE1C_uc003tcn.1_Silent_p.L65L|PDE1C_uc003tco.1_Silent_p.L125L|PDE1C_uc003tcr.2_Silent_p.L65L|PDE1C_uc003tcs.2_Silent_p.L65L	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	65					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CTGCATATTCCAAATTCTTCT	0.308													51	114					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	32109934	32109934	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:32109934G>A	uc003tcm.1	-	1	541	c.72C>T	c.(70-72)ATC>ATT	p.I24I	PDE1C_uc003tcn.1_Silent_p.I24I|PDE1C_uc003tco.1_Intron|PDE1C_uc003tcr.2_Silent_p.I24I|PDE1C_uc003tcs.2_Silent_p.I24I	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	24					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			AGATTTTCTCGATCTGTTCCG	0.512													18	135					0	0	1	0	0
BBS9	27241	broad.mit.edu	37	7	33313498	33313498	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:33313498C>T	uc003tdn.1	+	9	1459	c.946C>T	c.(946-948)CAA>TAA	p.Q316*	BBS9_uc003tdo.1_Nonsense_Mutation_p.Q316*|BBS9_uc003tdp.1_Nonsense_Mutation_p.Q316*|BBS9_uc003tdq.1_Nonsense_Mutation_p.Q316*|BBS9_uc010kwn.1_RNA|BBS9_uc011kan.1_Nonsense_Mutation_p.Q316*|BBS9_uc011kao.1_Nonsense_Mutation_p.Q194*	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	316					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			GCATATTTATCAAGATGTGAC	0.353									Bardet-Biedl_syndrome				19	37					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34006106	34006106	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:34006106G>A	uc011kap.1	+	4	449	c.335G>A	c.(334-336)GGA>GAA	p.G112E		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	112	VWFC 2.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						ACCTATGAAGGAAATACCTAT	0.438													13	48					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34118537	34118537	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:34118537C>T	uc011kap.1	+	12	1261	c.1147C>T	c.(1147-1149)CAG>TAG	p.Q383*		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	383	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						ATTTAACTTTCAGGGGACGTG	0.572													53	137					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34125657	34125657	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:34125657G>A	uc011kap.1	+	13	1812	c.1698G>A	c.(1696-1698)TGG>TGA	p.W566*		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	566	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						TCAAATCCTGGGAGTTTCAGA	0.502													22	56					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34698120	34698120	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:34698120T>A	uc003teg.1	+	1	224	c.96T>A	c.(94-96)TTT>TTA	p.F32L	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.F32L|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Missense_Mutation_p.F32L|NPSR1_uc003tei.1_Missense_Mutation_p.F32L|NPSR1_uc010kww.1_Missense_Mutation_p.F32L|NPSR1_uc011kar.1_Missense_Mutation_p.F32L	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	32	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CAGTGACTTTTACTGAAGTGG	0.498													20	71					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34851459	34851459	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:34851459G>A	uc003teg.1	+	4	590	c.462G>A	c.(460-462)ATG>ATA	p.M154I	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.M154I|NPSR1_uc010kwt.1_Missense_Mutation_p.M1I|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Missense_Mutation_p.M154I|NPSR1_uc010kww.1_Missense_Mutation_p.M143I|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	154	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TCTACCCCATGAAGTTCCTTC	0.458													44	113					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34888123	34888123	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:34888123C>T	uc003teg.1	+	8	1001	c.873C>T	c.(871-873)TTC>TTT	p.F291F	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.F291F|NPSR1_uc010kwt.1_Silent_p.F138F|NPSR1_uc010kwu.1_Silent_p.F81F|NPSR1_uc010kwv.1_Silent_p.F225F|NPSR1_uc003tei.1_Silent_p.F291F|NPSR1_uc010kww.1_Silent_p.F280F|NPSR1_uc011kar.1_Silent_p.F225F	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	291	Helical; Name=6; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	GTCCATACTTCCTGTTTGACA	0.493													103	272					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34888154	34888154	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:34888154C>A	uc003teg.1	+	8	1032	c.904C>A	c.(904-906)CTT>ATT	p.L302I	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.L302I|NPSR1_uc010kwt.1_Missense_Mutation_p.L149I|NPSR1_uc010kwu.1_Missense_Mutation_p.L92I|NPSR1_uc010kwv.1_Missense_Mutation_p.L236I|NPSR1_uc003tei.1_Missense_Mutation_p.L302I|NPSR1_uc010kww.1_Missense_Mutation_p.L291I|NPSR1_uc011kar.1_Missense_Mutation_p.L236I	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	302	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TTTCAACCTCCTTCCAGACAC	0.493													23	283					2.21704e-12	2.22614e-12	1	1	0
NPSR1	387129	broad.mit.edu	37	7	34888231	34888231	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:34888231C>T	uc003teg.1	+	8	1109	c.981C>T	c.(979-981)CCC>CCT	p.P327P	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.P327P|NPSR1_uc010kwt.1_Silent_p.P174P|NPSR1_uc010kwu.1_Silent_p.P117P|NPSR1_uc010kwv.1_Silent_p.P261P|NPSR1_uc003tei.1_Silent_p.P327P|NPSR1_uc010kww.1_Silent_p.P316P|NPSR1_uc011kar.1_Silent_p.P261P	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	327	Helical; Name=7; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CCATCAACCCCCTCATCTACT	0.502													44	152					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34889177	34889177	+	Silent	SNP	G	A	A	rs149024595		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:34889177G>A	uc003teg.1	+	9	1154	c.1026G>A	c.(1024-1026)AGG>AGA	p.R342R	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.G376R|NPSR1_uc010kwt.1_Silent_p.R189R|NPSR1_uc010kwu.1_Silent_p.R132R|NPSR1_uc010kwv.1_Silent_p.R276R|NPSR1_uc003tei.1_Intron|NPSR1_uc010kww.1_Intron|NPSR1_uc011kar.1_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	342	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity	p.R342R(1)		skin(3)|pancreas(1)	4					Halothane(DB01159)	CTTTCTCCAGGGAGCAAAGAT	0.408													27	86					0	0	1	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35131484	35131484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:35131484G>A	uc003teq.1	-	20	2209	c.1102C>T	c.(1102-1104)CCA>TCA	p.P368S	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TCGTAAAGTGGATGATTCACA	0.413													23	63					0	0	1	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35144275	35144275	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:35144275G>A	uc003teq.1	-	18	1940	c.833C>T	c.(832-834)TCC>TTC	p.S278F	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						GCATATCAAGGAAGCCATAAC	0.388													12	40					0	0	1	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35144355	35144355	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:35144355C>T	uc003teq.1	-	18	1860	c.753G>A	c.(751-753)CAG>CAA	p.Q251Q	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						ACGCTAACAACTGCAATGTGT	0.323													9	34					0	0	1	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35163649	35163649	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:35163649C>T	uc003teq.1	-	13	1554	c.447G>A	c.(445-447)TTG>TTA	p.L149L	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TCAGAAATTTCAAAATGATTG	0.274													29	90					0	0	1	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35187478	35187478	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:35187478C>T	uc003teq.1	-	8	1112	c.5G>A	c.(4-6)TGG>TAG	p.W2*	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						AGGTGGTGTCCACATCACACG	0.363													8	33					0	0	1	0	0
TBX20	57057	broad.mit.edu	37	7	35242161	35242161	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:35242161T>A	uc011kas.1	-	8	1236	c.1225A>T	c.(1225-1227)AGT>TGT	p.S409C		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	409						nucleus	DNA binding			central_nervous_system(1)	1						GTGGGGCCACTCCCTTGCATG	0.557													7	27					0	0	1	0	0
TBX20	57057	broad.mit.edu	37	7	35242163	35242163	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:35242163C>T	uc011kas.1	-	8	1234	c.1223G>A	c.(1222-1224)GGG>GAG	p.G408E		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	408						nucleus	DNA binding			central_nervous_system(1)	1						GGGGCCACTCCCTTGCATGGA	0.552													7	29					0	0	1	0	0
TBX20	57057	broad.mit.edu	37	7	35284668	35284668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:35284668G>A	uc011kas.1	-	4	558	c.547C>T	c.(547-549)CTC>TTC	p.L183F		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	183	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						TGCACATAGAGCCTAAGAAAA	0.353													9	31					0	0	1	0	0
TBX20	57057	broad.mit.edu	37	7	35293219	35293219	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:35293219C>A	uc011kas.1	-	1	24	c.13G>T	c.(13-15)GCG>TCG	p.A5S		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	5						nucleus	DNA binding			central_nervous_system(1)	1						TTGGGGGACGCCGTGAACTCC	0.647													20	56					0.00047179	0.00047229	1	1	0
ANLN	54443	broad.mit.edu	37	7	36459857	36459857	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:36459857G>A	uc003tff.2	+	11	2153	c.1949G>A	c.(1948-1950)AGA>AAA	p.R650K	ANLN_uc011kaz.1_Missense_Mutation_p.R562K|ANLN_uc003tfg.2_Missense_Mutation_p.R613K|ANLN_uc010kxe.2_Missense_Mutation_p.R612K	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	650	Interaction with F-actin.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						AAATTCCAAAGAACTCGTGTC	0.433													27	82					0	0	1	0	0
AOAH	313	broad.mit.edu	37	7	36552954	36552954	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:36552954C>T	uc003tfh.3	-	21	2033	c.1632G>A	c.(1630-1632)TGG>TGA	p.W544*	AOAH_uc010kxf.2_Missense_Mutation_p.G584E|AOAH_uc011kba.1_Nonsense_Mutation_p.W512*	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	544					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GCACCTTTTTCCAGAAATGAT	0.498													26	61					0	0	1	0	0
AOAH	313	broad.mit.edu	37	7	36634028	36634028	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:36634028G>A	uc003tfh.3	-	12	1256	c.855C>T	c.(853-855)TTC>TTT	p.F285F	AOAH_uc010kxf.2_Silent_p.F285F|AOAH_uc011kba.1_Silent_p.F253F	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	285					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GTAGATTGATGAAAGAGTTCT	0.413													25	42					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	36895318	36895318	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:36895318C>T	uc003tfk.1	-	22	2329	c.2022G>A	c.(2020-2022)GGG>GGA	p.G674G	ELMO1_uc003tfi.1_Silent_p.G194G|ELMO1_uc003tfj.1_Silent_p.G194G|ELMO1_uc011kbb.1_RNA|ELMO1_uc011kbc.1_Silent_p.G578G|ELMO1_uc010kxg.1_Silent_p.G674G	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	674	PH.				actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TCATGTCCTTCCCGAGTAGCG	0.517													34	105					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37251039	37251039	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:37251039C>T	uc003tfk.1	-	13	1345	c.1038G>A	c.(1036-1038)GAG>GAA	p.E346E	ELMO1_uc011kbc.1_Silent_p.E250E|ELMO1_uc010kxg.1_Silent_p.E346E	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	346	ELMO.				actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						ACTTGCGTTTCTCCATGCTGC	0.488													21	63					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37256298	37256298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:37256298C>T	uc003tfk.1	-	11	1090	c.783G>A	c.(781-783)GAG>GAA	p.E261E	ELMO1_uc011kbc.1_Silent_p.E165E|ELMO1_uc010kxg.1_Silent_p.E261E	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	261					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TATTCGCCATCTCCTGTGGAA	0.478													31	69					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37262227	37262227	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:37262227C>T	uc003tfk.1	-	10	1080	c.773G>A	c.(772-774)AGG>AAG	p.R258K	ELMO1_uc011kbc.1_Missense_Mutation_p.R162K|ELMO1_uc010kxg.1_Missense_Mutation_p.R258K	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	258					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TACCTGCCTCCTCTCATCAGG	0.428													19	79					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37262241	37262241	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:37262241C>T	uc003tfk.1	-	10	1066	c.759G>A	c.(757-759)AAG>AAA	p.K253K	ELMO1_uc011kbc.1_Silent_p.K157K|ELMO1_uc010kxg.1_Silent_p.K253K	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	253					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						CATCAGGAGCCTTCAGGAAAA	0.418													30	82					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37354527	37354527	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:37354527C>T	uc003tfk.1	-	4	427	c.120_splice	c.e4-1	p.G40_splice	ELMO1_uc010kxg.1_Splice_Site_p.G40_splice	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1						actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						AAGAGACCACCTTAAAAATAC	0.343													7	30					0	0	1	0	0
GPR141	353345	broad.mit.edu	37	7	37780368	37780368	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:37780368G>A	uc003tfm.1	+	1	373	c.373G>A	c.(373-375)GAA>AAA	p.E125K	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	125	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						AGACAAAGTGGAATTCTACAG	0.498													35	144					0	0	1	0	0
TXNDC3	51314	broad.mit.edu	37	7	37903043	37903043	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:37903043G>A	uc003tfn.2	+	8	805	c.433G>A	c.(433-435)GAA>AAA	p.E145K		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	145					cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AGTTAGTGAAGAATCACCATG	0.343									Kartagener_syndrome				24	105					0	0	1	0	0
TXNDC3	51314	broad.mit.edu	37	7	37916554	37916554	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:37916554G>A	uc003tfn.2	+	12	1311	c.939G>A	c.(937-939)ATG>ATA	p.M313I		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	313					cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TGAAAAGCATGAAATTAGAAA	0.343									Kartagener_syndrome				16	58					0	0	1	0	0
TXNDC3	51314	broad.mit.edu	37	7	37936686	37936686	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:37936686G>A	uc003tfn.2	+	17	2131	c.1759G>A	c.(1759-1761)GAA>AAA	p.E587K		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	587	NDK 3.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GGATCCTGAGGAAAACTAAAG	0.353									Kartagener_syndrome				14	41					0	0	1	0	0
STARD3NL	83930	broad.mit.edu	37	7	38247193	38247193	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:38247193C>T	uc003tfr.2	+	2	236	c.88C>T	c.(88-90)CCC>TCC	p.P30S	STARD3NL_uc003tfs.2_Missense_Mutation_p.P30S|STARD3NL_uc003tft.2_Missense_Mutation_p.P30S	NM_032016	NP_114405	O95772	MENTO_HUMAN	MLN64 N-terminal homolog	30	Cytoplasmic (Potential).					integral to membrane|late endosome membrane				ovary(1)	1						TTCCATCAACCCCACACAACT	0.507													30	87					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	38370174	38370174	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:38370174C>T	uc010kxj.1	-	2	260	c.124G>A	c.(124-126)GAT>AAT	p.D42N	uc010kxk.1_RNA					SubName: Full=Putative uncharacterized protein ENSP00000374866;																		ACAGGAAGATCACAAGTGATT	0.502													35	67					0	0	1	0	0
AMPH	273	broad.mit.edu	37	7	38424437	38424437	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:38424437G>A	uc003tgu.2	-	21	2139	c.2070C>T	c.(2068-2070)TTC>TTT	p.F690F	AMPH_uc003tgv.2_Silent_p.F648F|AMPH_uc003tgt.2_Silent_p.F575F	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	690	SH3.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						AGCGTCGGGTGAAGTTCTCTG	0.458													29	101					0	0	1	0	0
AMPH	273	broad.mit.edu	37	7	38433628	38433628	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:38433628C>T	uc003tgu.2	-	18	1654	c.1585G>A	c.(1585-1587)GAG>AAG	p.E529K	AMPH_uc003tgv.2_Missense_Mutation_p.E487K|AMPH_uc003tgt.2_Missense_Mutation_p.E414K|AMPH_uc003tgw.1_Missense_Mutation_p.E552K|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	529					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						GCTTCGAGCTCCTCTGCTTCA	0.572													28	130					0	0	1	0	0
AMPH	273	broad.mit.edu	37	7	38516566	38516566	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:38516566G>A	uc003tgu.2	-	6	469	c.400C>T	c.(400-402)CGC>TGC	p.R134C	AMPH_uc003tgv.2_Missense_Mutation_p.R134C	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	134	BAR.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						TTGGCGATGCGATTCTGTCAA	0.522													19	60					0	0	1	0	0
AMPH	273	broad.mit.edu	37	7	38574572	38574572	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:38574572C>T	uc003tgu.2	-	2	178	c.109G>A	c.(109-111)GAA>AAA	p.E37K	AMPH_uc003tgv.2_Missense_Mutation_p.E37K	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	37	BAR.|Potential.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						TCGAACTGTTCGTCTTTTGTC	0.348													8	95					0	0	1	0	0
FAM183B	340286	broad.mit.edu	37	7	38725614	38725614	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:38725614G>A	uc011kbd.1	-	2	979	c.683C>T	c.(682-684)CCC>CTC	p.P228L		NR_028347				Homo sapiens cDNA FLJ42138 fis, clone TESTI2036684.												0						ATAGCCTTGGGGCTGCTCCGT	0.607													4	48					0	0	1	0	0
VPS41	27072	broad.mit.edu	37	7	38766521	38766521	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:38766521G>A	uc003tgy.2	-	28	2498	c.2472C>T	c.(2470-2472)CCC>CCT	p.P824P	VPS41_uc003tgz.2_Silent_p.P799P|VPS41_uc010kxn.2_Silent_p.P735P|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	824	RING-type; atypical.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						TGCTGGGCATGGGCAGGCACT	0.512													21	88					0	0	1	0	0
VPS41	27072	broad.mit.edu	37	7	38768163	38768163	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:38768163G>A	uc003tgy.2	-	27	2409	c.2383C>T	c.(2383-2385)CTT>TTT	p.L795F	VPS41_uc003tgz.2_Missense_Mutation_p.L770F|VPS41_uc010kxn.2_Missense_Mutation_p.L706F|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	795	RING-type; atypical.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						ATAGGGGAAAGGCACGACTCA	0.403													33	140					0	0	1	0	0
POU6F2	11281	broad.mit.edu	37	7	39046462	39046462	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:39046462C>T	uc003thb.1	+	1	55	c.13C>T	c.(13-15)CTT>TTT	p.L5F	uc003tha.1_Intron	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	5					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GAGTGCTCTTCTTCAGGTATT	0.348													15	104					0	0	1	0	0
POU6F2	11281	broad.mit.edu	37	7	39247056	39247057	+	Missense_Mutation	DNP	CC	TT	TT	rs142566948		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:39247056_39247057CC>TT	uc003thb.1	+	4	390_391	c.348_349CC>TT	c.(346-351)GCCCTC>GCTTTC	p.L117F	POU6F2_uc010kxo.2_Missense_Mutation_p.L109F	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	117					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GCCCCCCAGCCCTCAACCAGCC	0.574													58	157					0	0	1	0	0
POU6F2	11281	broad.mit.edu	37	7	39504152	39504152	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:39504152G>A	uc003thb.1	+	10	1985	c.1943G>A	c.(1942-1944)CGA>CAA	p.R648Q		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	648	Homeobox (By similarity).				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						AACTATGACCGAGAAGTAGTT	0.498													4	21					0	0	1	0	0
POU6F2	11281	broad.mit.edu	37	7	39504228	39504228	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:39504228G>A	uc003thb.1	+	10	2061	c.2019G>A	c.(2017-2019)GAG>GAA	p.E673E		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	673					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						AACAGCACGAGCCGGCCACGG	0.453													8	10					0	0	1	0	0
C7orf36	57002	broad.mit.edu	37	7	39610212	39610212	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:39610212C>T	uc003thc.3	+	2	246	c.237C>T	c.(235-237)CTC>CTT	p.L79L		NM_020192	NP_064577	Q9NRH1	CG036_HUMAN	hypothetical protein LOC57002	79											0						ATGGACGACTCCGAGGAACAT	0.348													26	89					0	0	1	0	0
C7orf36	57002	broad.mit.edu	37	7	39611996	39611996	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:39611996C>T	uc003thc.3	+	3	381	c.372C>T	c.(370-372)ATC>ATT	p.I124I		NM_020192	NP_064577	Q9NRH1	CG036_HUMAN	hypothetical protein LOC57002	124											0						TGAAATCAATCACTCCACCGT	0.368													22	93					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	39894714	39894714	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:39894714G>A	uc003thg.2	-	1		c.146C>T								full-length cDNA clone CS0DF025YB16 of Fetal brain of Homo sapiens (human).																		AAGAGAAAGCGAAGGCAGCGG	0.682													9	30					0	0	1	0	0
C7orf10	79783	broad.mit.edu	37	7	40277264	40277264	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:40277264G>A	uc003thn.1	+	7	560	c.515G>A	c.(514-516)CGA>CAA	p.R172Q	C7orf10_uc003thm.1_Missense_Mutation_p.R142Q|C7orf10_uc003tho.1_Missense_Mutation_p.R172Q	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	179							transferase activity			ovary(2)	2						ATTTCTCAGCGAGCTGGTTAT	0.433													26	55					0	0	1	0	0
INHBA	3624	broad.mit.edu	37	7	41729268	41729268	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:41729268C>T	uc003thq.2	-	2	1496	c.1261G>A	c.(1261-1263)GAG>AAG	p.E421K	INHBA_uc003thr.2_Missense_Mutation_p.E421K	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	421					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						CCACACTCCTCCACGATCATG	0.463										TSP Lung(11;0.080)			39	83					0	0	1	0	0
INHBA	3624	broad.mit.edu	37	7	41729504	41729504	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:41729504G>A	uc003thq.2	-	2	1260	c.1025C>T	c.(1024-1026)CCC>CTC	p.P342L	INHBA_uc003thr.2_Missense_Mutation_p.P342L	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	342					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						ATAGCCAGAGGGAGCAATGAT	0.537										TSP Lung(11;0.080)			30	103					0	0	1	0	0
INHBA	3624	broad.mit.edu	37	7	41739911	41739911	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:41739911G>A	uc003thq.2	-	1	297	c.62C>T	c.(61-63)TCC>TTC	p.S21F	LOC285954_uc003tht.3_Intron|INHBA_uc003thr.2_Missense_Mutation_p.S21F|LOC285954_uc003ths.2_Intron	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	21					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						TGGGGTGGGGGAACTCCTCAC	0.567										TSP Lung(11;0.080)			87	180					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43351577	43351577	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:43351577C>T	uc003tid.1	+	4	848	c.243C>T	c.(241-243)CTC>CTT	p.L81L	HECW1_uc011kbi.1_Silent_p.L81L|HECW1_uc003tie.1_Silent_p.L113L	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	81					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GCTCCACGCTCATGGTCAGCA	0.612													21	73					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43351612	43351612	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:43351612C>T	uc003tid.1	+	4	883	c.278C>T	c.(277-279)TCT>TTT	p.S93F	HECW1_uc011kbi.1_Missense_Mutation_p.S93F|HECW1_uc003tie.1_Missense_Mutation_p.S125F	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	93					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						ATCGGGCACTCTCAGGACCTG	0.567													26	74					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43547729	43547729	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:43547729G>A	uc003tid.1	+	23	4470	c.3865G>A	c.(3865-3867)GGC>AGC	p.G1289S	HECW1_uc011kbi.1_Missense_Mutation_p.G1255S	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1289	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TGGAGAGGAGGGGTGAGGCAC	0.532													6	46					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43594307	43594307	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:43594307G>A	uc003tid.1	+	29	5232	c.4627G>A	c.(4627-4629)GAA>AAA	p.E1543K	HECW1_uc011kbi.1_Missense_Mutation_p.E1509K	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1543	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity	p.E1522Q(1)		ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CGTGCCCTACGAAGGCTTCGC	0.562													9	35					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43594369	43594369	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:43594369G>A	uc003tid.1	+	29	5294	c.4689G>A	c.(4687-4689)GGG>GGA	p.G1563G	HECW1_uc011kbi.1_Silent_p.G1529G	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1563	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity	p.G1542G(1)		ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						AGAAATGGGGGAAAATTACTT	0.527													4	24					0	0	1	0	0
BLVRA	644	broad.mit.edu	37	7	43846778	43846778	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:43846778C>T	uc003tir.2	+	8	918	c.835C>T	c.(835-837)CTG>TTG	p.L279L	BLVRA_uc010kxv.2_Silent_p.L279L	NM_000712	NP_000703	P53004	BIEA_HUMAN	biliverdin reductase A precursor	279					heme catabolic process	cytosol	biliverdin reductase activity|zinc ion binding			ovary(1)	1					NADH(DB00157)	GAAACGCATCCTGCACTGCCT	0.433													32	75					0	0	1	0	0
MRPS24	64951	broad.mit.edu	37	7	43906397	43906397	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:43906397G>A	uc003tit.1	-	4	456	c.405C>T	c.(403-405)CTC>CTT	p.L135L		NM_032014	NP_114403	Q96EL2	RT24_HUMAN	mitochondrial ribosomal protein S24 precursor	135					translation	mitochondrial large ribosomal subunit|mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						TGTAGCCCACGAGGAAGTAGT	0.512													35	67					0	0	1	0	0
URGCP	55665	broad.mit.edu	37	7	43918417	43918417	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:43918417G>A	uc003tiw.2	-	6	702	c.645C>T	c.(643-645)CTC>CTT	p.L215L	URGCP_uc003tiu.2_Silent_p.L172L|URGCP_uc003tiv.2_Silent_p.L140L|URGCP_uc003tix.2_Silent_p.L206L|URGCP_uc003tiy.2_Silent_p.L172L|URGCP_uc003tiz.2_Silent_p.L172L|URGCP_uc011kbj.1_Silent_p.L172L	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	215					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						CAGGCAACACGAGTGGGAGTG	0.562													11	29					0	0	1	0	0
URGCP	55665	broad.mit.edu	37	7	43921516	43921516	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:43921516G>A	uc003tiw.2	-	4	210	c.153C>T	c.(151-153)TTC>TTT	p.F51F	URGCP_uc003tiu.2_Silent_p.F8F|URGCP_uc003tiv.2_5'UTR|URGCP_uc003tix.2_Silent_p.F42F|URGCP_uc003tiy.2_Silent_p.F8F|URGCP_uc003tiz.2_Silent_p.F8F|URGCP_uc011kbj.1_Silent_p.F8F	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	51					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						ctccataacggaactcgcaat	0.119													83	183					0	0	1	0	0
PGAM2	5224	broad.mit.edu	37	7	44102378	44102378	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44102378C>T	uc003tjs.2	-	3	782	c.747G>A	c.(745-747)CAG>CAA	p.Q249Q		NM_000290	NP_000281	P15259	PGAM2_HUMAN	phosphoglycerate mutase 2	249					gluconeogenesis|glycolysis|striated muscle contraction	cytosol	2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity				0						TGGCCTTGCCCTGGGCAGCCA	0.617													4	42					0	0	1	0	0
AEBP1	165	broad.mit.edu	37	7	44146425	44146425	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44146425C>T	uc003tkb.2	+	2	839	c.534C>T	c.(532-534)ACC>ACT	p.T178T		NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	178	Pro-rich.				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCTCAGAAACCCTGGAGTGGC	0.667													8	21					0	0	1	0	0
AEBP1	165	broad.mit.edu	37	7	44151644	44151644	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44151644C>T	uc003tkb.2	+	16	2337	c.2032C>T	c.(2032-2034)CAG>TAG	p.Q678*	AEBP1_uc003tkc.3_Nonsense_Mutation_p.Q253*|AEBP1_uc003tkd.2_5'UTR	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	678	Interaction with PTEN (By similarity).				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGTGGCAGCGCAGATGGTGGG	0.657													16	28					0	0	1	0	0
POLD2	5425	broad.mit.edu	37	7	44156455	44156455	+	Silent	SNP	G	A	A	rs142289447	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44156455G>A	uc010kxz.2	-	7	1391	c.741C>T	c.(739-741)CTC>CTT	p.L247L	POLD2_uc003tke.3_Silent_p.L247L|POLD2_uc010kya.2_Silent_p.L247L|POLD2_uc003tkf.3_Silent_p.L247L	NM_006230	NP_006221	P49005	DPOD2_HUMAN	DNA-directed DNA polymerase delta 2	247					base-excision repair|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	DNA binding|DNA-directed DNA polymerase activity|protein binding			ovary(2)	2						TGTGGCTGAGGAGGTTGCCAG	0.637													18	48					0	0	1	0	0
MYL7	58498	broad.mit.edu	37	7	44178607	44178607	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44178607G>A	uc003tkg.2	-	7	453	c.441C>T	c.(439-441)TTC>TTT	p.F147F		NM_021223	NP_067046	Q01449	MLRA_HUMAN	myosin light chain 2a	147	EF-hand 3.				actin filament-based movement|smooth muscle contraction	A band|myosin complex	ATPase activity, coupled|calcium ion binding|microfilament motor activity				0						GTGTCAGGGCGAACATCTGCT	0.612													17	42					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44189392	44189392	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44189392C>T	uc003tkl.2	-	6	1116	c.646G>A	c.(646-648)GAA>AAA	p.E216K	GCK_uc003tkj.1_Missense_Mutation_p.E215K|GCK_uc003tkk.1_Missense_Mutation_p.E217K	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	216					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						TGATGGTCTTCGTAGTAGCAG	0.557													40	81					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44228526	44228526	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44228526C>T	uc003tkl.2	-	1	497	c.27G>A	c.(25-27)GAG>GAA	p.E9E		NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	9					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						TCTTGGCGGCCTCCATCCTGG	0.562													13	29					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44553214	44553214	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44553214C>T	uc003tlb.2	-	20	3968	c.3912G>A	c.(3910-3912)CAG>CAA	p.Q1304Q	NPC1L1_uc003tlc.2_Silent_p.Q1277Q|NPC1L1_uc011kbw.1_Silent_p.Q1231Q|NPC1L1_uc003tla.2_3'UTR	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1304	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	CAGCCCGCTTCTGCTCCAGTG	0.597													29	54					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44555716	44555716	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44555716C>T	uc003tlb.2	-	18	3737	c.3681G>A	c.(3679-3681)AGG>AGA	p.R1227R	NPC1L1_uc003tlc.2_Silent_p.R1200R|NPC1L1_uc011kbw.1_Silent_p.R1154R|NPC1L1_uc003tla.2_Intron	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1227	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	CCTCTTTGGCCCTCTCCAGCC	0.627													6	11					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44560392	44560392	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44560392C>T	uc003tlb.2	-	14	3164	c.3108G>A	c.(3106-3108)GTG>GTA	p.V1036V	NPC1L1_uc003tlc.2_Silent_p.V1036V|NPC1L1_uc011kbw.1_Silent_p.V990V|NPC1L1_uc003tla.2_Silent_p.V39V	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1036	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AAGTCAAGTTCACAGAGGTGC	0.577													24	88					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44560656	44560656	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44560656C>T	uc003tlb.2	-	13	3071	c.3015G>A	c.(3013-3015)GTG>GTA	p.V1005V	NPC1L1_uc003tlc.2_Silent_p.V1005V|NPC1L1_uc011kbw.1_Silent_p.V959V|NPC1L1_uc003tla.2_Silent_p.V8V	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1005	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GGAACTGCTCCACCGAGGGCC	0.567													45	163					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44575962	44575962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44575962C>T	uc003tlb.2	-	4	1803	c.1747G>A	c.(1747-1749)GAC>AAC	p.D583N	NPC1L1_uc003tlc.2_Missense_Mutation_p.D583N|NPC1L1_uc011kbw.1_Missense_Mutation_p.D583N|NPC1L1_uc003tld.2_Missense_Mutation_p.D583N	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	583	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AGACGGGGGTCCCCGGCAGGG	0.567													28	70					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44579081	44579081	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44579081G>A	uc003tlb.2	-	2	971	c.915C>T	c.(913-915)TTC>TTT	p.F305F	NPC1L1_uc003tlc.2_Silent_p.F305F|NPC1L1_uc011kbw.1_Silent_p.F305F|NPC1L1_uc003tld.2_Silent_p.F305F	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	305	Helical; Name=1; (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GGGCCACACGGAATCCCACAA	0.602													39	74					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44579376	44579376	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44579376C>T	uc003tlb.2	-	2	676	c.620G>A	c.(619-621)GGA>GAA	p.G207E	NPC1L1_uc003tlc.2_Missense_Mutation_p.G207E|NPC1L1_uc011kbw.1_Missense_Mutation_p.G207E|NPC1L1_uc003tld.2_Missense_Mutation_p.G207E	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	207	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GCCTGTGTCTCCCTGGAAGTT	0.632													26	70					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44579753	44579753	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44579753G>A	uc003tlb.2	-	2	299	c.243C>T	c.(241-243)CTC>CTT	p.L81L	NPC1L1_uc003tlc.2_Silent_p.L81L|NPC1L1_uc011kbw.1_Silent_p.L81L|NPC1L1_uc003tld.2_Silent_p.L81L	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	81	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GGCCGGTGTAGAGGCGGGGGC	0.612													12	31					0	0	1	0	0
OGDH	4967	broad.mit.edu	37	7	44687287	44687287	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44687287C>T	uc003tln.2	+	4	555	c.446C>T	c.(445-447)CCC>CTC	p.P149L	OGDH_uc003tlm.2_Missense_Mutation_p.P149L|OGDH_uc011kbx.1_Intron|OGDH_uc011kby.1_Intron|OGDH_uc003tlp.2_Intron|OGDH_uc011kbz.1_5'UTR|OGDH_uc003tlo.1_5'UTR	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	149					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	CAGCTGGACCCCCTGGGGATT	0.522													26	53					0	0	1	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44797655	44797655	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44797655C>T	uc003tlr.2	+	6	884	c.761C>T	c.(760-762)CCT>CTT	p.P254L	ZMIZ2_uc003tlq.2_Missense_Mutation_p.P222L|ZMIZ2_uc003tls.2_Missense_Mutation_p.P254L|ZMIZ2_uc003tlt.2_5'Flank|ZMIZ2_uc010kyj.2_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	254	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						TATCCTGGGCCTCCCCAGGCC	0.632													36	95					0	0	1	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44800029	44800029	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44800029C>T	uc003tlr.2	+	9	1200	c.1077C>T	c.(1075-1077)ACC>ACT	p.T359T	ZMIZ2_uc003tlq.2_Silent_p.T301T|ZMIZ2_uc003tls.2_Silent_p.T333T|ZMIZ2_uc003tlt.2_5'UTR|ZMIZ2_uc010kyj.2_5'UTR	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	359	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						TACAGCCTACCCGTTCCATCC	0.587													7	73					0	0	1	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44804027	44804027	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44804027C>T	uc003tlr.2	+	14	1993	c.1870C>T	c.(1870-1872)CTG>TTG	p.L624L	ZMIZ2_uc003tlq.2_Silent_p.L566L|ZMIZ2_uc003tls.2_Silent_p.L598L|ZMIZ2_uc003tlt.2_Silent_p.L247L|ZMIZ2_uc010kyj.2_Silent_p.L146L|ZMIZ2_uc003tlu.2_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	624	SP-RING-type.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						GTGCTTTGACCTGGAGTCGTA	0.463													18	53					0	0	1	0	0
PPIA	5478	broad.mit.edu	37	7	44839450	44839450	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:44839450C>T	uc003tlw.2	+	4	422	c.339C>T	c.(337-339)TTC>TTT	p.F113F	PPIA_uc003tlx.2_RNA|PPIA_uc010kyl.2_RNA	NM_021130	NP_066953	P62937	PPIA_HUMAN	peptidylprolyl isomerase A	113	PPIase cyclophilin-type.				entry into host cell|leukocyte migration|platelet activation|platelet degranulation|protein folding|provirus integration|regulation of viral genome replication|RNA-dependent DNA replication|uncoating of virus	cytosol|extracellular region|nucleus	peptide binding|peptidyl-prolyl cis-trans isomerase activity|unfolded protein binding|virion binding				0					Cyclosporine(DB00091)|L-Proline(DB00172)	CCCAGTTTTTCATCTGCACTG	0.468													39	83					0	0	1	0	0
MYO1G	64005	broad.mit.edu	37	7	45005740	45005740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:45005740G>A	uc003tmh.2	-	16	2233	c.2089C>T	c.(2089-2091)CGG>TGG	p.R697W	MYO1G_uc003tmf.2_Missense_Mutation_p.R140W|MYO1G_uc003tmg.2_Missense_Mutation_p.R459W|MYO1G_uc010kym.2_Missense_Mutation_p.R582W|MYO1G_uc003tmi.1_3'UTR	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	697						myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						ACCAGTGTCCGGGGTGAGCGG	0.642													10	37					0	0	1	0	0
MYO1G	64005	broad.mit.edu	37	7	45009349	45009349	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:45009349G>A	uc003tmh.2	-	11	1602	c.1458C>T	c.(1456-1458)ACC>ACT	p.T486T	MYO1G_uc003tmf.2_5'Flank|MYO1G_uc003tmg.2_Silent_p.T248T|MYO1G_uc010kym.2_Silent_p.T371T|MYO1G_uc003tmi.1_Silent_p.T398T|MYO1G_uc003tmj.2_Silent_p.T248T	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	486	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						GCATGTCCAGGGTCTGCAGGA	0.662													45	110					0	0	1	0	0
MYO1G	64005	broad.mit.edu	37	7	45009750	45009750	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:45009750G>A	uc003tmh.2	-	10	1365	c.1221C>T	c.(1219-1221)TTC>TTT	p.F407F	MYO1G_uc003tmf.2_5'Flank|MYO1G_uc003tmg.2_Silent_p.F169F|MYO1G_uc010kym.2_Silent_p.F292F|MYO1G_uc003tmi.1_Silent_p.F319F|MYO1G_uc003tmj.2_Silent_p.F169F	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	407	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						AGAACTGCTCGAAACTGGGGG	0.547													8	16					0	0	1	0	0
MYO1G	64005	broad.mit.edu	37	7	45016647	45016647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:45016647G>A	uc003tmh.2	-	2	263	c.119C>T	c.(118-120)ACC>ATC	p.T40I	MYO1G_uc003tmg.2_5'Flank|MYO1G_uc010kym.2_Intron|MYO1G_uc003tmi.1_5'UTR|MYO1G_uc003tmj.2_5'UTR	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	40	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						ACCGATGTAGGTGTAGATGCG	0.617													37	47					0	0	1	0	0
CCM2	83605	broad.mit.edu	37	7	45108060	45108060	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:45108060C>T	uc003tmo.2	+	5	637	c.491C>T	c.(490-492)TCC>TTC	p.S164F	CCM2_uc003tmn.2_RNA|CCM2_uc003tmp.2_Missense_Mutation_p.S106F|CCM2_uc003tmq.2_RNA|CCM2_uc003tmr.2_Intron|CCM2_uc011kcb.1_Missense_Mutation_p.S127F|CCM2_uc011kcc.1_Intron|CCM2_uc003tms.2_Missense_Mutation_p.S185F	NM_031443	NP_113631	Q9BSQ5	CCM2_HUMAN	cerebral cavernous malformation 2 isoform 2	164	PID.				endothelial tube morphogenesis|integrin-mediated signaling pathway|stress-activated MAPK cascade|vasculogenesis	cytoplasm	protein binding				0						CCAGGGATCTCCCCCAGCCAG	0.612									Familial_Cerebral_Cavernous_Angioma				33	63					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45725690	45725690	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:45725690C>T	uc003tne.3	+	13	2221	c.2203C>T	c.(2203-2205)CTG>TTG	p.L735L		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	735	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GCTCTGCTGCCTGGTGGGCAC	0.617													27	47					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45744123	45744123	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:45744123G>A	uc003tne.3	+	17	2743	c.2725G>A	c.(2725-2727)GAA>AAA	p.E909K		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	909	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	AAAGCTCATGGAAAAAGACTT	0.502													30	82					0	0	1	0	0
TNS3	64759	broad.mit.edu	37	7	47332457	47332457	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47332457G>A	uc003tnv.2	-	26	4186	c.3819C>T	c.(3817-3819)GCC>GCT	p.A1273A	TNS3_uc003tnw.2_Silent_p.A1273A	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	1273	SH2.					focal adhesion	protein binding			ovary(4)	4						TGCACGGCAAGGCCAAGGGCG	0.537													16	59					0	0	1	0	0
TNS3	64759	broad.mit.edu	37	7	47344548	47344548	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47344548G>A	uc003tnv.2	-	21	3071	c.2704C>T	c.(2704-2706)CCC>TCC	p.P902S	TNS3_uc003tnw.2_Missense_Mutation_p.P902S	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	902						focal adhesion	protein binding			ovary(4)	4						GGTCCGATGGGGCTCTCTGAC	0.597													14	38					0	0	1	0	0
TNS3	64759	broad.mit.edu	37	7	47463708	47463708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47463708G>A	uc003tnv.2	-	10	831	c.464C>T	c.(463-465)TCC>TTC	p.S155F	TNS3_uc003tnw.2_Missense_Mutation_p.S155F|TNS3_uc010kyo.1_Missense_Mutation_p.S155F	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	155	Phosphatase tensin-type.					focal adhesion	protein binding			ovary(4)	4						CCGTTTTTGGGAAGGCTGCAT	0.433													18	77					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47842882	47842882	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47842882G>A	uc003tny.1	-	53	7888	c.7888C>T	c.(7888-7890)CCT>TCT	p.P2630S	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2630	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TGAATGCCAGGAAGATAGACG	0.498													32	46					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47847945	47847945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47847945G>A	uc003tny.1	-	52	7727	c.7727C>T	c.(7726-7728)TCC>TTC	p.S2576F	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2576	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AAGGTGGCCGGAAACTGCATA	0.527													15	44					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47860722	47860722	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47860722G>A	uc003tny.1	-	46	6917	c.6917C>T	c.(6916-6918)TCC>TTC	p.S2306F	C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Missense_Mutation_p.S33F	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2306	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TTCATCTTGGGAAAATCTCCC	0.413													17	45					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47876552	47876552	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47876552G>A	uc003tny.1	-	37	5910	c.5910C>T	c.(5908-5910)CTC>CTT	p.L1970L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1970	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CCAGGGCAGTGAGACACGCGT	0.602													9	27					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47882631	47882631	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47882631G>A	uc003tny.1	-	34	5374	c.5374C>T	c.(5374-5376)CTG>TTG	p.L1792L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1792	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TGGCCCGGCAGGGAAGCTTCT	0.478													6	45					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47882633	47882633	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47882633G>A	uc003tny.1	-	34	5372	c.5372C>T	c.(5371-5373)TCC>TTC	p.S1791F		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1791	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GCCCGGCAGGGAAGCTTCTTG	0.473													7	43					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47894564	47894564	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47894564G>A	uc003tny.1	-	30	4775	c.4775C>T	c.(4774-4776)TCC>TTC	p.S1592F		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1592	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GGGGTTTTCGGAAAGCTCAGT	0.388													32	94					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47921602	47921602	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47921602G>A	uc003tny.1	-	20	3347	c.3347C>T	c.(3346-3348)CCC>CTC	p.P1116L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1116	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AGACAGGGAGGGGTCCACCAG	0.567													23	62					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47925324	47925324	+	Silent	SNP	C	T	T	rs141356808		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:47925324C>T	uc003tny.1	-	18	3165	c.3165G>A	c.(3163-3165)GAG>GAA	p.E1055E		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1055	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GCTGACTTCTCTCAGAGCGGC	0.587													32	89					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48269424	48269424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48269424C>T	uc003toq.2	+	7	660	c.635C>T	c.(634-636)TCC>TTC	p.S212F	ABCA13_uc003top.2_3'UTR|ABCA13_uc010kyr.2_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	212					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GGTTCTAGTTCCTTAATATCC	0.388													76	185					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48288033	48288033	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48288033C>T	uc003toq.2	+	14	1882	c.1857C>T	c.(1855-1857)GTC>GTT	p.V619V	ABCA13_uc010kyr.2_Silent_p.V122V	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	619					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ACCAGCTTGTCTCCACAGTGT	0.443													65	124					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48312163	48312163	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48312163C>T	uc003toq.2	+	17	2925	c.2900C>T	c.(2899-2901)TCA>TTA	p.S967L	ABCA13_uc010kyr.2_Missense_Mutation_p.S470L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	967					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ATTTATTCTTCATTTTACCGA	0.308													27	51					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48312324	48312324	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48312324C>T	uc003toq.2	+	17	3086	c.3061C>T	c.(3061-3063)CTT>TTT	p.L1021F	ABCA13_uc010kyr.2_Missense_Mutation_p.L524F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1021					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AGCAGAGGTTCTTGGGGGAAT	0.343													9	18					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48318309	48318309	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48318309G>A	uc003toq.2	+	18	7543	c.7518G>A	c.(7516-7518)TTG>TTA	p.L2506L	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2506					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TCATGCTGTTGAATGACAGTG	0.428													27	243					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48318381	48318381	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48318381G>A	uc003toq.2	+	18	7615	c.7590G>A	c.(7588-7590)AAG>AAA	p.K2530K	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2530					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AGCTGGTCAAGAAAGTTTCGG	0.413													69	158					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48338023	48338023	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48338023C>T	uc003toq.2	+	23	9285	c.9260C>T	c.(9259-9261)TCC>TTC	p.S3087F	ABCA13_uc010kys.1_Missense_Mutation_p.S161F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3087					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTTCGCTCTTCCATCCAAATC	0.368													23	32					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48349722	48349722	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48349722G>A	uc003toq.2	+	24	9525	c.9500G>A	c.(9499-9501)CGA>CAA	p.R3167Q	ABCA13_uc010kys.1_Missense_Mutation_p.R241Q|ABCA13_uc003tos.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3167					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTGGATGTGCGAGCTTTCATT	0.512													86	197					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48391896	48391896	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48391896G>A	uc003toq.2	+	31	10525	c.10500G>A	c.(10498-10500)GTG>GTA	p.V3500V	ABCA13_uc010kys.1_Silent_p.V574V|ABCA13_uc003tos.1_Silent_p.V326V	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3500					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GAACAGATGTGGTAAAAAACC	0.453													31	61					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48452052	48452052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48452052G>A	uc003toq.2	+	41	12356	c.12331G>A	c.(12331-12333)GAG>AAG	p.E4111K	ABCA13_uc010kys.1_Missense_Mutation_p.E1185K|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4111					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CAGTGGAAGTGAGCTGACCTA	0.493													18	44					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48506595	48506595	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48506595G>A	uc003toq.2	+	44	12883	c.12858G>A	c.(12856-12858)CGG>CGA	p.R4286R	ABCA13_uc010kys.1_Silent_p.R1361R|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Intron	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4286					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGCTTCTGCGGAAGTTTAGAG	0.478													28	90					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48528861	48528861	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48528861C>T	uc003toq.2	+	48	13236	c.13211C>T	c.(13210-13212)TCC>TTC	p.S4404F	ABCA13_uc010kys.1_Missense_Mutation_p.S1479F|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.S134F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4404					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GGTTTTCATTCCCTACCTTCC	0.378													10	21					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48547612	48547612	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48547612G>A	uc003toq.2	+	50	13516	c.13491G>A	c.(13489-13491)AGG>AGA	p.R4497R	ABCA13_uc010kys.1_Silent_p.R1572R|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.R227R	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4497					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTGGCTACAGGATGTACTGGT	0.488													8	34					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48556366	48556366	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48556366C>T	uc003toq.2	+	52	13711	c.13686C>T	c.(13684-13686)TCC>TCT	p.S4562S	ABCA13_uc010kys.1_Silent_p.S1637S|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.S292S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4562					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GAATCTTTTCCAGTTCGGACG	0.373													59	173					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48634378	48634378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48634378G>A	uc003toq.2	+	58	14738	c.14713G>A	c.(14713-14715)GAA>AAA	p.E4905K	ABCA13_uc010kys.1_Missense_Mutation_p.E1980K|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.E635K	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4905	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GGAGGTTCGGGAAGGCTGTGC	0.488													43	97					0	0	1	0	0
CDC14C	168448	broad.mit.edu	37	7	48964347	48964347	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48964347C>T	uc010kyv.1	+	1	191	c.79C>T	c.(79-81)CGT>TGT	p.R27C		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						CGATCGCCTTCGTTTTGCCAT	0.527													11	118					0	0	1	0	0
CDC14C	168448	broad.mit.edu	37	7	48965291	48965291	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48965291G>A	uc010kyv.1	+	1	1135	c.1023G>A	c.(1021-1023)GGG>GGA	p.G341G		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						GGCTGGAAGGGGACTATTTTC	0.512													12	122					0	0	1	0	0
CDC14C	168448	broad.mit.edu	37	7	48965474	48965474	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:48965474G>A	uc010kyv.1	+	1	1318	c.1206G>A	c.(1204-1206)CGG>CGA	p.R402R		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						ATAGAAGTCGGGCCCTGAAAA	0.458													6	29					0	0	1	0	0
VWC2	375567	broad.mit.edu	37	7	49951662	49951662	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:49951662C>T	uc003tot.1	+	4	1415	c.859C>T	c.(859-861)CCT>TCT	p.P287S		NM_198570	NP_940972	Q2TAL6	VWC2_HUMAN	von Willebrand factor C domain containing 2	287					negative regulation of BMP signaling pathway|positive regulation of neuron differentiation	basement membrane|extracellular space					0						CGCGGTGATCCCTGCTGGCAG	0.423													11	72					0	0	1	0	0
VWC2	375567	broad.mit.edu	37	7	49951682	49951682	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:49951682G>A	uc003tot.1	+	4	1435	c.879G>A	c.(877-879)AAG>AAA	p.K293K		NM_198570	NP_940972	Q2TAL6	VWC2_HUMAN	von Willebrand factor C domain containing 2	293					negative regulation of BMP signaling pathway|positive regulation of neuron differentiation	basement membrane|extracellular space					0						GAGAAGTGAAGACTGACGAGT	0.453													18	65					0	0	1	0	0
ZPBP	11055	broad.mit.edu	37	7	50097645	50097645	+	Missense_Mutation	SNP	C	T	T	rs148913753		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50097645C>T	uc003tou.2	-	4	497	c.427G>A	c.(427-429)GAA>AAA	p.E143K	ZPBP_uc011kci.1_Missense_Mutation_p.E69K|ZPBP_uc010kyw.2_Missense_Mutation_p.E142K	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	143					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					GGTTTATATTCGAGGAAACAT	0.328													19	64					0	0	1	0	0
ZPBP	11055	broad.mit.edu	37	7	50132782	50132782	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50132782G>A	uc003tou.2	-	1	79	c.9C>T	c.(7-9)GCC>GCT	p.A3A	ZPBP_uc010kyw.2_Silent_p.A3A|C7orf72_uc011kcj.1_5'Flank	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	3					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					CAAGGGCGAAGGCCTCCATCC	0.577													2	1					0	0	1	0	0
IKZF1	10320	broad.mit.edu	37	7	50367249	50367249	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50367249C>T	uc003tow.3	+	4	224	c.56C>T	c.(55-57)CCT>CTT	p.P19L	IKZF1_uc003tox.3_Missense_Mutation_p.P19L|IKZF1_uc003toy.3_Missense_Mutation_p.P19L|IKZF1_uc011kck.1_Missense_Mutation_p.P19L|IKZF1_uc003toz.3_5'UTR|IKZF1_uc010kyx.2_5'UTR|IKZF1_uc003tov.1_Missense_Mutation_p.P19L	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	19					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(17)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GAAAGCCCCCCTGTAAGCGAT	0.597			D		ALL								5	18					0	0	1	0	0
IKZF1	10320	broad.mit.edu	37	7	50367257	50367257	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50367257G>A	uc003tow.3	+	4	232	c.64G>A	c.(64-66)GAT>AAT	p.D22N	IKZF1_uc003tox.3_Missense_Mutation_p.D22N|IKZF1_uc003toy.3_Missense_Mutation_p.D22N|IKZF1_uc011kck.1_Missense_Mutation_p.D22N|IKZF1_uc003toz.3_5'UTR|IKZF1_uc010kyx.2_5'UTR|IKZF1_uc003tov.1_Missense_Mutation_p.D22N	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	22					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(17)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				CCCTGTAAGCGATACTCCAGA	0.587			D		ALL								7	18					0	0	1	0	0
IKZF1	10320	broad.mit.edu	37	7	50467665	50467665	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50467665G>A	uc003tow.3	+	9	1068	c.900G>A	c.(898-900)GAG>GAA	p.E300E	IKZF1_uc003tox.3_Silent_p.E258E|IKZF1_uc003toy.3_Silent_p.E258E|IKZF1_uc011kck.1_Silent_p.E213E|IKZF1_uc003toz.3_Silent_p.E270E|IKZF1_uc010kyx.2_Silent_p.E40E|IKZF1_uc003tpa.3_Silent_p.E42E	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	300					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding			haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				CCAGCTACGAGAAGGAGAACG	0.637			D		ALL								10	27					0	0	1	0	0
IKZF1	10320	broad.mit.edu	37	7	50468302	50468302	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50468302G>A	uc003tow.3	+	9	1705	c.1537G>A	c.(1537-1539)GAG>AAG	p.E513K	IKZF1_uc003tox.3_Missense_Mutation_p.E471K|IKZF1_uc003toy.3_Missense_Mutation_p.E471K|IKZF1_uc011kck.1_Missense_Mutation_p.E426K|IKZF1_uc003toz.3_Missense_Mutation_p.E483K|IKZF1_uc010kyx.2_Missense_Mutation_p.E253K|IKZF1_uc003tpa.3_Missense_Mutation_p.E255K	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	513	C2H2-type 6.				cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding			haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				AACGCGAGGGGAGCACCGCTT	0.642			D		ALL								8	34					0	0	1	0	0
DDC	1644	broad.mit.edu	37	7	50537852	50537852	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50537852C>T	uc003tpf.3	-	12	1145	c.1059G>A	c.(1057-1059)CTG>CTA	p.L353L	DDC_uc010kza.2_Silent_p.L268L|DDC_uc003tpg.3_Silent_p.L353L	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	353					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	ATCTTCTGCCCAGTGGTATCT	0.418													32	97					0	0	1	0	0
DDC	1644	broad.mit.edu	37	7	50605650	50605650	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50605650C>T	uc003tpf.3	-	4	429	c.343G>A	c.(343-345)GAG>AAG	p.E115K	DDC_uc010kza.2_Intron|DDC_uc003tpg.3_Missense_Mutation_p.E115K	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	115	1.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	ATCACAGTCTCCAGCTCTGTG	0.552													21	47					0	0	1	0	0
DDC	1644	broad.mit.edu	37	7	50611658	50611658	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50611658G>A	uc003tpf.3	-	2	212	c.126C>T	c.(124-126)ATC>ATT	p.I42I	DDC_uc010kza.2_Silent_p.I42I|DDC_uc003tpg.3_Silent_p.I42I	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	42					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	CAGCGGCAGGGATCAGCGGCC	0.562													92	118					0	0	1	0	0
DDC	1644	broad.mit.edu	37	7	50611760	50611760	+	Silent	SNP	C	T	T	rs74987565	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50611760C>T	uc003tpf.3	-	2	110	c.24G>A	c.(22-24)AGG>AGA	p.R8R	DDC_uc010kza.2_Silent_p.R8R|DDC_uc003tpg.3_Silent_p.R8R	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	8					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	CCTTCCCTCTCCTTCGGAATT	0.522													58	154					0	0	1	0	0
GRB10	2887	broad.mit.edu	37	7	50682527	50682527	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:50682527G>A	uc003tpi.2	-	9	1066	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	GRB10_uc003tph.3_Silent_p.F287F|GRB10_uc003tpj.2_Silent_p.F299F|GRB10_uc003tpk.2_Silent_p.F345F|GRB10_uc010kzb.2_Silent_p.F287F|GRB10_uc003tpl.2_Silent_p.F339F|GRB10_uc003tpm.2_Silent_p.F287F|GRB10_uc003tpn.2_Silent_p.F287F	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	345	PH.				insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					CGATCAGGGAGAAGATGTTGC	0.572									Russell-Silver_syndrome				27	113					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51092883	51092883	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:51092883G>A	uc003tpr.3	-	12	3876	c.3691C>T	c.(3691-3693)CTC>TTC	p.L1231F	COBL_uc003tps.2_Missense_Mutation_p.L1241F|COBL_uc011kcl.1_Missense_Mutation_p.L1184F|COBL_uc003tpp.3_Missense_Mutation_p.L1017F|COBL_uc003tpq.3_Missense_Mutation_p.L1125F|COBL_uc003tpo.3_Missense_Mutation_p.L773F	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1231										skin(3)|ovary(2)	5	Glioma(55;0.08)					GTGTTGCTGAGGGTGCCCGTG	0.647													18	74					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51096346	51096346	+	Missense_Mutation	SNP	G	A	A	rs138592316		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:51096346G>A	uc003tpr.3	-	10	2632	c.2447C>T	c.(2446-2448)CCC>CTC	p.P816L	COBL_uc003tps.2_Missense_Mutation_p.P873L|COBL_uc011kcl.1_Missense_Mutation_p.P816L|COBL_uc003tpp.3_Missense_Mutation_p.P602L|COBL_uc003tpq.3_Missense_Mutation_p.P757L|COBL_uc003tpo.3_Missense_Mutation_p.P358L	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	816										skin(3)|ovary(2)	5	Glioma(55;0.08)					CTTCTGCTGGGGCGATATTGG	0.657													11	52					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51258589	51258589	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:51258589C>T	uc003tpr.3	-	4	828	c.643G>A	c.(643-645)GAG>AAG	p.E215K	COBL_uc003tps.2_Missense_Mutation_p.E215K|COBL_uc011kcl.1_Missense_Mutation_p.E215K|COBL_uc010kzc.2_Missense_Mutation_p.E215K|COBL_uc003tpt.2_Missense_Mutation_p.E215K|COBL_uc003tpp.3_5'UTR|COBL_uc003tpq.3_Missense_Mutation_p.E131K	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	215										skin(3)|ovary(2)	5	Glioma(55;0.08)					ATCCCGAGCTCGTTCAGGGAC	0.592													8	35					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51261219	51261219	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:51261219G>A	uc003tpr.3	-	3	498	c.313C>T	c.(313-315)CTT>TTT	p.L105F	COBL_uc003tps.2_Missense_Mutation_p.L105F|COBL_uc011kcl.1_Missense_Mutation_p.L105F|COBL_uc010kzc.2_Missense_Mutation_p.L105F|COBL_uc003tpt.2_Missense_Mutation_p.L105F|COBL_uc003tpp.3_5'Flank|COBL_uc003tpq.3_Missense_Mutation_p.L21F	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	105										skin(3)|ovary(2)	5	Glioma(55;0.08)					CGAATTTCAAGGGCATGGTGG	0.408													6	82					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51261233	51261233	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:51261233G>A	uc003tpr.3	-	3	484	c.299C>T	c.(298-300)CCA>CTA	p.P100L	COBL_uc003tps.2_Missense_Mutation_p.P100L|COBL_uc011kcl.1_Missense_Mutation_p.P100L|COBL_uc010kzc.2_Missense_Mutation_p.P100L|COBL_uc003tpt.2_Missense_Mutation_p.P100L|COBL_uc003tpp.3_5'Flank|COBL_uc003tpq.3_Missense_Mutation_p.P16L	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	100										skin(3)|ovary(2)	5	Glioma(55;0.08)					ATGGTGGGATGGATTCAGGTG	0.418													7	83					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51287543	51287543	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:51287543G>A	uc003tpr.3	-	2	325	c.140C>T	c.(139-141)TCG>TTG	p.S47L	COBL_uc003tps.2_Missense_Mutation_p.S47L|COBL_uc011kcl.1_Missense_Mutation_p.S47L|COBL_uc010kzc.2_Missense_Mutation_p.S47L|COBL_uc003tpt.2_Missense_Mutation_p.S47L	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	47										skin(3)|ovary(2)	5	Glioma(55;0.08)					GTTCTGCTGCGACCCGAGGGC	0.627													26	69					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51287566	51287566	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:51287566G>A	uc003tpr.3	-	2	302	c.117C>T	c.(115-117)CCC>CCT	p.P39P	COBL_uc003tps.2_Silent_p.P39P|COBL_uc011kcl.1_Silent_p.P39P|COBL_uc010kzc.2_Silent_p.P39P|COBL_uc003tpt.2_Silent_p.P39P	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	39										skin(3)|ovary(2)	5	Glioma(55;0.08)					CATCGTGGGGGGGCTTCTGGT	0.607													25	58					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103569	53103569	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:53103569G>A	uc003tpz.2	+	1	221	c.205G>A	c.(205-207)GGG>AGG	p.G69R		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	69											0						CTTCCAGTGGGGGCGCCCGGT	0.706													6	64					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103654	53103654	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:53103654G>A	uc003tpz.2	+	1	306	c.290G>A	c.(289-291)TGG>TAG	p.W97*		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	97											0						TCCGAGGGCTGGAGGCGCCCT	0.711													14	22					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103787	53103787	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:53103787C>T	uc003tpz.2	+	1	439	c.423C>T	c.(421-423)ATC>ATT	p.I141I		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	141											0						CCATCGGGATCGCGCCCCCTG	0.582													19	42					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53104125	53104125	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:53104125C>T	uc003tpz.2	+	1	777	c.761C>T	c.(760-762)TCC>TTC	p.S254F		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	254											0						GCTTGGCCTTCCGTGCTGGTC	0.637													33	61					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53104213	53104213	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:53104213C>T	uc003tpz.2	+	1	865	c.849C>T	c.(847-849)TTC>TTT	p.F283F		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	283											0						GGGTCTCCTTCGCCCTCGAGG	0.617													25	66					0	0	1	0	0
VSTM2A	222008	broad.mit.edu	37	7	54610467	54610467	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:54610467C>T	uc010kzf.2	+	1	449	c.44C>T	c.(43-45)TCC>TTC	p.S15F	VSTM2A_uc010kze.2_Missense_Mutation_p.S15F|VSTM2A_uc003tqc.3_Missense_Mutation_p.S15F	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	15						extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			GTTTTCTTTTCCGTTTTATAT	0.413													48	101					0	0	1	0	0
VSTM2A	222008	broad.mit.edu	37	7	54612349	54612349	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:54612349G>A	uc010kzf.2	+	2	519	c.114G>A	c.(112-114)GCG>GCA	p.A38A	VSTM2A_uc010kze.2_Silent_p.A38A|VSTM2A_uc003tqc.3_Silent_p.A38A	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	38	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			ACGTGACGGCGACCGAGGGGC	0.577													17	55					0	0	1	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617532	54617532	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:54617532G>A	uc010kzf.2	+	4	708	c.303G>A	c.(301-303)GTG>GTA	p.V101V	VSTM2A_uc010kze.2_Silent_p.V101V|VSTM2A_uc003tqc.3_Silent_p.V101V	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	101	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			TTCAGACAGTGAAAGTCCAAG	0.378													7	22					0	0	1	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617553	54617553	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:54617553C>T	uc010kzf.2	+	4	729	c.324C>T	c.(322-324)ATC>ATT	p.I108I	VSTM2A_uc010kze.2_Silent_p.I108I|VSTM2A_uc003tqc.3_Silent_p.I108I	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	108	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			GCAATGACATCTCCCACAAGC	0.408													10	24					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55219018	55219018	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55219018G>A	uc003tqk.2	+	5	837	c.591G>A	c.(589-591)GGG>GGA	p.G197G	EGFR_uc003tqh.2_Silent_p.G197G|EGFR_uc003tqi.2_Silent_p.G197G|EGFR_uc003tqj.2_Silent_p.G197G|EGFR_uc010kzg.1_Silent_p.G152G|EGFR_uc011kco.1_Silent_p.G144G|EGFR_uc003tql.1_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	197	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GTCCCAATGGGAGCTGCTGGG	0.502		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			23	119					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55223540	55223540	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55223540G>A	uc003tqk.2	+	8	1153	c.907G>A	c.(907-909)GAT>AAT	p.D303N	EGFR_uc003tqh.2_Missense_Mutation_p.D303N|EGFR_uc003tqi.2_Missense_Mutation_p.D303N|EGFR_uc003tqj.2_Missense_Mutation_p.D303N|EGFR_uc010kzg.1_Missense_Mutation_p.D258N|EGFR_uc011kco.1_Missense_Mutation_p.D250N|EGFR_uc011kcp.1_5'Flank|EGFR_uc011kcq.1_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	303	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TGTGGTGACAGATCACGGCTC	0.597		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			16	81					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55224310	55224310	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55224310C>T	uc003tqk.2	+	9	1337	c.1091C>T	c.(1090-1092)TCC>TTC	p.S364F	EGFR_uc003tqh.2_Missense_Mutation_p.S364F|EGFR_uc003tqi.2_Missense_Mutation_p.S364F|EGFR_uc003tqj.2_Missense_Mutation_p.S364F|EGFR_uc010kzg.1_Missense_Mutation_p.S319F|EGFR_uc011kco.1_Missense_Mutation_p.S311F|EGFR_uc011kcp.1_RNA|EGFR_uc011kcq.1_RNA	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	364	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	AACTGCACCTCCATCAGTGGC	0.413		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			17	83					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55266508	55266508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55266508C>T	uc003tqk.2	+	23	3046	c.2800C>T	c.(2800-2802)CCT>TCT	p.P934S	EGFR_uc010kzg.1_Missense_Mutation_p.P889S|EGFR_uc011kco.1_Missense_Mutation_p.P881S	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	934	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	AGAACGCCTCCCTCAGCCACC	0.542		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			15	58					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55268032	55268032	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55268032C>T	uc003tqk.2	+	24	3118	c.2872C>T	c.(2872-2874)CGC>TGC	p.R958C	EGFR_uc010kzg.1_Missense_Mutation_p.R913C|EGFR_uc011kco.1_Missense_Mutation_p.R905C	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	958	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CGCAGATAGTCGCCCAAAGTT	0.458		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			29	101					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55268104	55268104	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55268104C>T	uc003tqk.2	+	24	3190	c.2944C>T	c.(2944-2946)CAG>TAG	p.Q982*	EGFR_uc010kzg.1_Nonsense_Mutation_p.Q937*|EGFR_uc011kco.1_Nonsense_Mutation_p.Q929*	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	982	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CCTTGTCATTCAGGTACAAAT	0.522		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			19	58					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55269448	55269448	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55269448C>T	uc003tqk.2	+	26	3381	c.3135C>T	c.(3133-3135)TCC>TCT	p.S1045S	EGFR_uc010kzg.1_Silent_p.S1000S|EGFR_uc011kco.1_Silent_p.S992S	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	1045	Cytoplasmic (Potential).|Ser-rich.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GCAACAATTCCACCGTGGCTT	0.433		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			45	117					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55272965	55272965	+	Silent	SNP	C	T	T	rs143770509		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55272965C>T	uc003tqk.2	+	28	3534	c.3288C>T	c.(3286-3288)TCC>TCT	p.S1096S	EGFR_uc011kco.1_Silent_p.S1043S	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	1096	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TAAACCAGTCCGTTCCCAAAA	0.383		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			11	43					0	0	1	0	0
LANCL2	55915	broad.mit.edu	37	7	55467736	55467736	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55467736C>T	uc003tqp.2	+	4	1195	c.617C>T	c.(616-618)GCC>GTC	p.A206V		NM_018697	NP_061167	Q9NS86	LANC2_HUMAN	LanC lantibiotic synthetase component C-like 2	206					negative regulation of transcription, DNA-dependent|positive regulation of abscisic acid mediated signaling pathway	cortical actin cytoskeleton|cytosol|nucleus|plasma membrane	ATP binding|catalytic activity|GTP binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding			ovary(1)|skin(1)	2	Breast(14;0.0379)		Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00128)|Epithelial(13;0.0706)			TATCTGTATGCCTTACTGTAC	0.473													33	114					0	0	1	0	0
LANCL2	55915	broad.mit.edu	37	7	55467766	55467766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55467766C>T	uc003tqp.2	+	4	1225	c.647C>T	c.(646-648)CCA>CTA	p.P216L		NM_018697	NP_061167	Q9NS86	LANC2_HUMAN	LanC lantibiotic synthetase component C-like 2	216					negative regulation of transcription, DNA-dependent|positive regulation of abscisic acid mediated signaling pathway	cortical actin cytoskeleton|cytosol|nucleus|plasma membrane	ATP binding|catalytic activity|GTP binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding			ovary(1)|skin(1)	2	Breast(14;0.0379)		Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00128)|Epithelial(13;0.0706)			GAGATAGGTCCAGGCACCGTG	0.463													39	116					0	0	1	0	0
VOPP1	81552	broad.mit.edu	37	7	55560108	55560108	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55560108G>A	uc003tqs.2	-	4	378	c.195C>T	c.(193-195)TTC>TTT	p.F65F	VOPP1_uc003tqq.2_Silent_p.F56F|VOPP1_uc010kzh.2_Silent_p.F62F|VOPP1_uc010kzi.2_Silent_p.F48F|VOPP1_uc011kcr.1_5'UTR	NM_030796	NP_110423	Q96AW1	VOPP1_HUMAN	EGFR-coamplified and overexpressed protein	65	Helical; (Potential).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic vesicle membrane|endosome|integral to organelle membrane	signal transducer activity				0						TCATCAGAAGGAACCTGAGGA	0.632													5	19					0	0	1	0	0
VOPP1	81552	broad.mit.edu	37	7	55565347	55565347	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55565347G>A	uc003tqs.2	-	3	333	c.150C>T	c.(148-150)TGC>TGT	p.C50C	VOPP1_uc003tqq.2_Silent_p.C41C|VOPP1_uc010kzh.2_Silent_p.C47C|VOPP1_uc010kzi.2_Silent_p.C33C|VOPP1_uc011kcr.1_5'UTR	NM_030796	NP_110423	Q96AW1	VOPP1_HUMAN	EGFR-coamplified and overexpressed protein	50	Extracellular (Potential).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic vesicle membrane|endosome|integral to organelle membrane	signal transducer activity				0						CCCGCACACAGCACCTGGAGC	0.637													17	75					0	0	1	0	0
VOPP1	81552	broad.mit.edu	37	7	55565375	55565375	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55565375G>A	uc003tqs.2	-	3	305	c.122C>T	c.(121-123)TCC>TTC	p.S41F	VOPP1_uc003tqq.2_Missense_Mutation_p.S32F|VOPP1_uc010kzh.2_Missense_Mutation_p.S38F|VOPP1_uc010kzi.2_Missense_Mutation_p.S24F|VOPP1_uc011kcr.1_5'UTR	NM_030796	NP_110423	Q96AW1	VOPP1_HUMAN	EGFR-coamplified and overexpressed protein	41	Extracellular (Potential).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic vesicle membrane|endosome|integral to organelle membrane	signal transducer activity				0						GTCCTCGTAGGAGCGGCATCT	0.592													25	51					0	0	1	0	0
LOC442308	442308	broad.mit.edu	37	7	55713891	55713891	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55713891G>A	uc010kzj.2	+	1		c.580G>A				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						TCAGTTGGTAGAGAACACTGA	0.478													13	37					0	0	1	0	0
LOC442308	442308	broad.mit.edu	37	7	55714431	55714431	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55714431C>T	uc010kzj.2	+	1		c.1120C>T				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						GCACTGGCATCCAGTAGCTCT	0.532													9	71					0	0	1	0	0
FKBP9L	360132	broad.mit.edu	37	7	55755518	55755519	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55755518_55755519CC>TT	uc010kzl.2	-	4	474_475	c.374_375GG>AA	c.(373-375)CGG>CAA	p.R125Q	FKBP9L_uc010kzk.2_Missense_Mutation_p.R14Q|FKBP9L_uc003tqt.2_Missense_Mutation_p.R14Q|FKBP9L_uc011kcs.1_Missense_Mutation_p.R14Q	NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						TGATCACTGTCCGTTTCTCGCC	0.515													17	59					0	0	1	0	0
FKBP9L	360132	broad.mit.edu	37	7	55759114	55759114	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55759114G>A	uc010kzl.2	-	3	268	c.168C>T	c.(166-168)ATC>ATT	p.I56I	FKBP9L_uc003tqt.2_5'Flank|FKBP9L_uc011kcs.1_5'Flank	NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						AGTGGGAGGTGATGCTGATGG	0.522													18	107					0	0	1	0	0
SEPT14	346288	broad.mit.edu	37	7	55863771	55863771	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55863771G>A	uc003tqz.2	-	10	1251	c.1134C>T	c.(1132-1134)TTC>TTT	p.F378F		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	378	Potential.				cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TAAGATGCTCGAACTTGTCCT	0.378													15	33					0	0	1	0	0
SEPT14	346288	broad.mit.edu	37	7	55873040	55873040	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55873040G>A	uc003tqz.2	-	9	1147	c.1030C>T	c.(1030-1032)CAA>TAA	p.Q344*		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	344	Potential.				cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CTCTGACATTGATCATAGAAC	0.294													12	28					0	0	1	0	0
SEPT14	346288	broad.mit.edu	37	7	55874926	55874926	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55874926G>A	uc003tqz.2	-	8	960	c.843C>T	c.(841-843)TTC>TTT	p.F281F		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	281					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GGAGCTTAACGAAGTCACAGT	0.328													26	56					0	0	1	0	0
SEPT14	346288	broad.mit.edu	37	7	55874940	55874940	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55874940T>A	uc003tqz.2	-	8	946	c.829A>T	c.(829-831)AAT>TAT	p.N277Y		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	277					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TCACAGTGATTTTCATTTTCC	0.308													23	44					0	0	1	0	0
ZNF713	349075	broad.mit.edu	37	7	55990881	55990881	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:55990881C>T	uc003trc.1	+	2	113	c.75C>T	c.(73-75)GCC>GCT	p.A25A	ZNF713_uc003tra.1_Silent_p.A38A|MRPS17_uc003trb.2_Silent_p.A25A	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	25	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			AGGATGTGGCCGTGGACTTCA	0.517													34	58					0	0	1	0	0
GBAS	2631	broad.mit.edu	37	7	56065061	56065061	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:56065061T>G	uc003tre.1	+	9	723	c.715T>G	c.(715-717)TAC>GAC	p.Y239D	GBAS_uc003trf.1_Missense_Mutation_p.Y200D	NM_001483	NP_001474	O75323	NIPS2_HUMAN	nipsnap homolog 2	239						integral to plasma membrane|membrane fraction|mitochondrion	protein binding			central_nervous_system(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TTTTTAAGCTTACAGGGATCT	0.418													32	83					0	0	1	0	0
ZNF479	90827	broad.mit.edu	37	7	57187685	57187685	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:57187685G>A	uc010kzo.2	-	5	1708	c.1437C>T	c.(1435-1437)ACC>ACT	p.T479T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	479	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			GTTGCATAAGGGTTGAGGAGC	0.403													11	101					0	0	1	0	0
ZNF479	90827	broad.mit.edu	37	7	57188492	57188492	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:57188492C>T	uc010kzo.2	-	5	901	c.630G>A	c.(628-630)GAG>GAA	p.E210E		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	210	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TGTAGGACTTCTCCCTAGTAT	0.333													10	32					0	0	1	0	0
ZNF479	90827	broad.mit.edu	37	7	57194407	57194407	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:57194407C>T	uc010kzo.2	-	3	329	c.58G>A	c.(58-60)GAC>AAC	p.D20N		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	20	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			ATAGCTATGTCTCTGAATGTC	0.413													11	94					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57522848	57522848	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:57522848G>A	uc011kdi.1	+	3	348	c.236G>A	c.(235-237)AGA>AAA	p.R79K		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						AATATAAAGAGAAATGAGATG	0.398													21	125					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57522853	57522853	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:57522853G>A	uc011kdi.1	+	3	353	c.241G>A	c.(241-243)GAG>AAG	p.E81K		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						AAAGAGAAATGAGATGGTAGC	0.408													32	114					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57528795	57528795	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:57528795G>A	uc011kdi.1	+	4	740	c.628G>A	c.(628-630)GAG>AAG	p.E210K		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						TCATACTAGGGAGAAGTCTTA	0.358													5	25					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57529546	57529546	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:57529546G>A	uc011kdi.1	+	4	1491	c.1379G>A	c.(1378-1380)GGA>GAA	p.G460E		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						ATTCATACTGGAGAGAAACCC	0.358													8	10					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57529548	57529548	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:57529548G>T	uc011kdi.1	+	4	1493	c.1381G>T	c.(1381-1383)GAG>TAG	p.E461*		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						TCATACTGGAGAGAAACCCTA	0.358													7	10					2.0095e-06	2.01295e-06	1	1	0
ZNF727	442319	broad.mit.edu	37	7	63529377	63529378	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:63529377_63529378GG>AA	uc011kdm.1	+	2	291_292	c.112_113GG>AA	c.(112-114)GGA>AAA	p.G38K		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	38	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGAGAACTACGGAAACCTGTTC	0.386													25	18					0	0	1	0	0
ZNF727	442319	broad.mit.edu	37	7	63538522	63538522	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:63538522G>A	uc011kdm.1	+	4	1274	c.1095G>A	c.(1093-1095)TTG>TTA	p.L365L		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	365					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATATGGAATTGAGACCTTACA	0.393													12	22					0	0	1	0	0
ZNF735	730291	broad.mit.edu	37	7	63674401	63674401	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:63674401C>T	uc011kdn.1	+	3	177	c.177C>T	c.(175-177)GTC>GTT	p.V59V		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	59	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTATGACTGTCTCTAAGCCAG	0.284													20	55					0	0	1	0	0
ZNF735	730291	broad.mit.edu	37	7	63680336	63680336	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:63680336G>A	uc011kdn.1	+	4	907	c.907G>A	c.(907-909)GGC>AGC	p.G303S		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	303	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAAGAATGTGGCAAAGCCTT	0.448													5	72					0	0	1	0	0
ZNF735	730291	broad.mit.edu	37	7	63680439	63680439	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:63680439C>T	uc011kdn.1	+	4	1010	c.1010C>T	c.(1009-1011)TCC>TTC	p.S337F		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	337	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTTAACTGCTCCTCGACTCTT	0.423													21	63					0	0	1	0	0
ZNF679	168417	broad.mit.edu	37	7	63726872	63726872	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:63726872G>A	uc003tsx.2	+	5	1130	c.861G>A	c.(859-861)AAG>AAA	p.K287K		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	287	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTAACCACAAGAGAATTCATA	0.428													24	52					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	63809132	63809132	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:63809132C>T	uc011kdo.1	+	4	1028	c.891C>T	c.(889-891)TTC>TTT	p.F297F						SubName: Full=cDNA FLJ57041, moderately similar to Zinc finger protein 92;																		ATAGGTGGTTCTCAGACCTTG	0.378													7	19					0	0	1	0	0
ZNF107	51427	broad.mit.edu	37	7	64152334	64152334	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:64152334C>T	uc003ttd.2	+	6	801	c.15C>T	c.(13-15)CCC>CCT	p.P5P	ZNF107_uc003tte.2_Silent_p.P5P	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TAGCCAAACCCCCAGGTAGGT	0.398													23	144					0	0	1	0	0
LOC168474	168474	broad.mit.edu	37	7	64313044	64313044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:64313044C>T	uc003ttj.1	-	1	1135	c.583G>A	c.(583-585)GAT>AAT	p.D195N		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						AGCTCTACATCTTCTTGGGTG	0.502													54	142					0	0	1	0	0
LOC168474	168474	broad.mit.edu	37	7	64313197	64313197	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:64313197G>A	uc003ttj.1	-	1	982	c.430C>T	c.(430-432)CAG>TAG	p.Q144*		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						TCACTGGGCTGACAGACAGTG	0.527													12	16					0	0	1	0	0
INTS4L1	285905	broad.mit.edu	37	7	64639830	64639830	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:64639830C>T	uc003ttw.2	+	5		c.713C>T				NR_027393				Homo sapiens cDNA FLJ25037 fis, clone CBL03066.												0						CTAACAACATCACCCTCCGAG	0.473													14	96					0	0	1	0	0
INTS4L1	285905	broad.mit.edu	37	7	64639846	64639846	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:64639846C>T	uc003ttw.2	+	5		c.729C>T				NR_027393				Homo sapiens cDNA FLJ25037 fis, clone CBL03066.												0						CCGAGAAGATCAGCTTGACAC	0.453													18	64					0	0	1	0	0
INTS4L1	285905	broad.mit.edu	37	7	64643370	64643370	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:64643370C>T	uc003ttw.2	+	6		c.777C>T				NR_027393				Homo sapiens cDNA FLJ25037 fis, clone CBL03066.												0						CAGAGATATTCGAGAGGCTCT	0.398													10	45					0	0	1	0	0
INTS4L1	285905	broad.mit.edu	37	7	64649419	64649419	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:64649419C>T	uc003ttw.2	+	9		c.1200C>T				NR_027393				Homo sapiens cDNA FLJ25037 fis, clone CBL03066.												0						CAAGAGGATCCTTCGCAGCAG	0.502													23	71					0	0	1	0	0
ZNF92	168374	broad.mit.edu	37	7	64864215	64864215	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:64864215C>T	uc003ttz.2	+	4	1331	c.1188C>T	c.(1186-1188)CCC>CCT	p.P396P	ZNF92_uc003tua.2_Silent_p.P327P|ZNF92_uc010kzu.2_Silent_p.P364P|ZNF92_uc003tub.2_Silent_p.P320P	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	396						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				GAGAAAAACCCTACAAATGTG	0.368													33	78					0	0	1	0	0
ASL	435	broad.mit.edu	37	7	65557757	65557757	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:65557757C>T	uc003tuo.2	+	17	1364	c.1253C>T	c.(1252-1254)CCC>CTC	p.P418L	ASL_uc003tup.2_Missense_Mutation_p.P418L|ASL_uc003tur.2_Missense_Mutation_p.P392L|ASL_uc003tuq.2_Missense_Mutation_p.P398L	NM_000048	NP_000039	P04424	ARLY_HUMAN	argininosuccinate lyase isoform 1	418					arginine biosynthetic process via ornithine|arginine catabolic process|urea cycle	cytosol	argininosuccinate lyase activity			breast(2)	2					L-Arginine(DB00125)	CTCCCCAGCCCCCTGTTCTCG	0.687													42	129					0	0	1	0	0
TYW1	55253	broad.mit.edu	37	7	66482982	66482982	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:66482982C>T	uc003tvn.2	+	6	862	c.713C>T	c.(712-714)TCC>TTC	p.S238F	TYW1_uc010lai.2_RNA	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	238					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				AAGTTCATCTCCCAGCTGCAG	0.547													19	32					0	0	1	0	0
AUTS2	26053	broad.mit.edu	37	7	70229978	70229978	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:70229978G>A	uc003tvw.3	+	8	2198	c.1455G>A	c.(1453-1455)GGG>GGA	p.G485G	AUTS2_uc003tvx.3_Silent_p.G485G|AUTS2_uc011keg.1_5'Flank	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	485										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		ACCCGGCCGGGAGCACTTACT	0.577													10	45					0	0	1	0	0
AUTS2	26053	broad.mit.edu	37	7	70236545	70236545	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:70236545C>T	uc003tvw.3	+	11	2488	c.1745C>T	c.(1744-1746)TCC>TTC	p.S582F	AUTS2_uc003tvx.3_Missense_Mutation_p.S582F|AUTS2_uc011keg.1_Missense_Mutation_p.S34F	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	582										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CTCTTCCATTCCTATCCTCCT	0.493													38	79					0	0	1	0	0
AUTS2	26053	broad.mit.edu	37	7	70255709	70255709	+	Silent	SNP	C	T	T	rs149150723		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:70255709C>T	uc003tvw.3	+	19	4250	c.3507C>T	c.(3505-3507)TCC>TCT	p.S1169S	AUTS2_uc003tvx.3_Silent_p.S1145S|AUTS2_uc011keg.1_Silent_p.S621S	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	1169	His-rich.									ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		GGCTCCACTCCGTGCACCCCG	0.701													15	56					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	70880876	70880876	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:70880876G>A	uc003tvy.2	+	4	591	c.591G>A	c.(589-591)GAG>GAA	p.E197E	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	197	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CATTTGCAGAGGAGCTGAAGG	0.483													11	34					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71036318	71036318	+	Silent	SNP	C	T	T	rs144325682		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:71036318C>T	uc003tvy.2	+	6	1011	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	WBSCR17_uc003tvz.2_Silent_p.F36F	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	337	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GGAAGTTCTTCGGTGAAATTG	0.507													29	87					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71130426	71130426	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:71130426C>T	uc003tvy.2	+	7	1111	c.1111C>T	c.(1111-1113)CTT>TTT	p.L371F	WBSCR17_uc003tvz.2_Missense_Mutation_p.L70F	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	371	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CATGGAGGTCCTTCCTTGCTC	0.522													38	123					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71135091	71135091	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:71135091G>A	uc003tvy.2	+	8	1401	c.1401G>A	c.(1399-1401)GGG>GGA	p.G467G	WBSCR17_uc003tvz.2_Silent_p.G166G	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	467	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TTGCTTACGGGGAGGTAATTC	0.418													75	179					0	0	1	0	0
CALN1	83698	broad.mit.edu	37	7	71743780	71743780	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:71743780G>A	uc003twa.3	-	2	536	c.9C>T	c.(7-9)TTC>TTT	p.F3F	CALN1_uc003twb.3_Silent_p.F45F|CALN1_uc003twc.3_Silent_p.F3F	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	3	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				TCACATGGTGGAACGGCATCT	0.498													12	47					0	0	1	0	0
TYW1B	441250	broad.mit.edu	37	7	72159743	72159743	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72159743G>A	uc011kej.1	-	14	1599	c.1440C>T	c.(1438-1440)ATC>ATT	p.I480I	TYW1B_uc011keh.1_Silent_p.I318I|TYW1B_uc011kei.1_Silent_p.I106I	NM_001145440	NP_001138912	Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B isoform	480					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity				0						GTGGGCGGTCGATTTTCTTCA	0.388													27	81					0	0	1	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334484	72334484	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72334484G>A	uc010lal.1	-	1		c.5172C>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						AGGCGAGCGCGATCTCGCGCC	0.587													40	119					0	0	1	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334640	72334640	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72334640C>T	uc010lal.1	-	1		c.5016G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CTCCCCAGGCCCCACTCACCT	0.602													36	90					0	0	1	0	0
POM121	9883	broad.mit.edu	37	7	72413453	72413453	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72413453C>T	uc003twk.2	+	11	2921	c.2921C>T	c.(2920-2922)GCC>GTC	p.A974V	POM121_uc003twj.2_Missense_Mutation_p.A709V|POM121_uc010lam.1_Missense_Mutation_p.A709V	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	974	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				GCATTTGGGGCCGCTGAGGGG	0.652													17	53					0	0	1	0	0
POM121	9883	broad.mit.edu	37	7	72413721	72413721	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72413721C>T	uc003twk.2	+	11	3189	c.3189C>T	c.(3187-3189)GTC>GTT	p.V1063V	POM121_uc003twj.2_Silent_p.V798V|POM121_uc010lam.1_Silent_p.V798V	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1063	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				CCACTGCTGTCTTCTTCGGTG	0.662													11	60					0	0	1	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657294	72657294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72657294C>T	uc003txs.1	-	13	2618	c.1690G>A	c.(1690-1692)GAA>AAA	p.E564K	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						caggagttttctctccatcgc	0													45	82					0	0	1	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657830	72657830	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72657830G>A	uc003txs.1	-	13	2082	c.1154C>T	c.(1153-1155)TCC>TTC	p.S385F	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						gacgatttgggagtgtccttg	0													70	189					0	0	1	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657943	72657943	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72657943G>A	uc003txs.1	-	13	1969	c.1041C>T	c.(1039-1041)TCC>TCT	p.S347S	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						gtttccctctggatgacatga	0													41	73					0	0	1	0	0
TRIM50	135892	broad.mit.edu	37	7	72738612	72738612	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72738612C>T	uc010lbd.1	-	2	299	c.174G>A	c.(172-174)CAG>CAA	p.Q58Q	FKBP6_uc003twz.2_Intron|TRIM50_uc003txy.1_Silent_p.Q58Q|TRIM50_uc003txz.1_Silent_p.Q58Q	NM_178125	NP_835226	Q86XT4	TRI50_HUMAN	tripartite motif protein 50A	58						cytoplasm|intracellular membrane-bounded organelle	ligase activity|zinc ion binding			skin(1)	1						CGTCCACCGCCTGCCGGCACA	0.687											OREG0018105	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	57					0	0	1	0	0
FKBP6	8468	broad.mit.edu	37	7	72742623	72742623	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72742623G>A	uc003tya.2	+	2	235	c.103G>A	c.(103-105)GAC>AAC	p.D35N	FKBP6_uc003twz.2_Intron|FKBP6_uc011kew.1_Missense_Mutation_p.D30N|FKBP6_uc010lbe.1_RNA|TRIM50_uc003txy.1_5'Flank|TRIM50_uc003txz.1_5'Flank	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	35					protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				CATCTCGGGGGACCGGGGCGT	0.632													9	41					0	0	1	0	0
BAZ1B	9031	broad.mit.edu	37	7	72857095	72857095	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72857095G>A	uc003tyc.2	-	18	4399	c.4054C>T	c.(4054-4056)CTC>TTC	p.L1352F		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	1352					ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				ATCTTGTGGAGGATCTCTTCA	0.532													21	58					0	0	1	0	0
BAZ1B	9031	broad.mit.edu	37	7	72903596	72903596	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72903596G>A	uc003tyc.2	-	6	1164	c.819C>T	c.(817-819)GTC>GTT	p.V273V		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	273	Mediates the tyrosine-protein kinase activity.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				CATCTTCTACGACCCAAGGTG	0.423													24	105					0	0	1	0	0
TBL2	26608	broad.mit.edu	37	7	72985229	72985229	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:72985229G>A	uc003tyh.2	-	7	1086	c.952C>T	c.(952-954)CCC>TCC	p.P318S	TBL2_uc011kex.1_Missense_Mutation_p.P282S|TBL2_uc010lbg.2_Missense_Mutation_p.P223S|TBL2_uc003tyi.2_Missense_Mutation_p.P153S|TBL2_uc011key.1_Missense_Mutation_p.P189S|TBL2_uc010lbh.2_Missense_Mutation_p.P223S	NM_012453	NP_036585	Q9Y4P3	TBL2_HUMAN	transducin (beta)-like 2	318											0		Lung NSC(55;0.0659)|all_lung(88;0.152)				AGCAAGTAGGGGTCCTGCTTC	0.587													32	98					0	0	1	0	0
VPS37D	155382	broad.mit.edu	37	7	73085400	73085400	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73085400C>T	uc003tyr.2	+	4	565	c.450C>T	c.(448-450)GCC>GCT	p.A150A		NM_001077621	NP_001071089	Q86XT2	VP37D_HUMAN	vacuolar protein sorting 37D	150	VPS37 C-terminal.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0		Lung NSC(55;0.0908)|all_lung(88;0.198)				TCCTGCCTGCCTTCCAGCGTG	0.706													13	28					0	0	1	0	0
CLDN3	1365	broad.mit.edu	37	7	73184326	73184326	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73184326C>T	uc003tzg.3	-	1	275	c.54G>A	c.(52-54)CTG>CTA	p.L18L	RFC2_uc011kfa.1_Intron	NM_001306	NP_001297	O15551	CLD3_HUMAN	claudin 3	18	Helical; (Potential).				response to hypoxia	integral to plasma membrane|tight junction	structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				CGATGGTGCCCAGCCAGCCCA	0.692													10	18					0	0	1	0	0
CLDN4	1364	broad.mit.edu	37	7	73246037	73246037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73246037C>T	uc003tzi.3	+	1	845	c.506C>T	c.(505-507)GCC>GTC	p.A169V	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	169	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				GTCGGCTGGGCCGCCTCCGGC	0.642													16	56					0	0	1	0	0
WBSCR28	135886	broad.mit.edu	37	7	73279445	73279445	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73279445C>T	uc003tzk.2	+	2	231	c.195C>T	c.(193-195)CCC>CCT	p.P65P	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_5'UTR	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	65						integral to membrane				breast(1)	1		Lung NSC(55;0.159)				CCCACCTACCCCTGGGAGCTG	0.632													43	185					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73462885	73462885	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73462885C>T	uc003tzw.2	+	15	889	c.798C>T	c.(796-798)TTC>TTT	p.F266F	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_RNA|ELN_uc011kfe.1_Silent_p.F235F|ELN_uc003tzn.2_Silent_p.F266F|ELN_uc003tzz.2_Silent_p.F230F|ELN_uc003tzo.2_Silent_p.F252F|ELN_uc003tzp.2_Silent_p.F222F|ELN_uc003tzq.2_Silent_p.F149F|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Silent_p.F266F|ELN_uc003tzt.2_Silent_p.F271F|ELN_uc003tzu.2_Silent_p.F271F|ELN_uc003tzv.2_Silent_p.F256F|ELN_uc003tzx.2_Silent_p.F256F|ELN_uc011kff.1_Silent_p.F266F|ELN_uc003tzy.2_Silent_p.F261F	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	266	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	cagcaAAGTTCGGTGAGTGCC	0.502			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						5	65					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73470747	73470747	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73470747C>T	uc003tzw.2	+	20	1388	c.1297C>T	c.(1297-1299)CCG>TCG	p.P433S	RFC2_uc011kfa.1_Intron|ELN_uc011kfe.1_Missense_Mutation_p.P402S|ELN_uc003tzn.2_Missense_Mutation_p.P433S|ELN_uc003tzz.2_Intron|ELN_uc003tzo.2_Missense_Mutation_p.P419S|ELN_uc003tzp.2_Intron|ELN_uc003tzq.2_Missense_Mutation_p.P316S|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Missense_Mutation_p.P433S|ELN_uc003tzt.2_Missense_Mutation_p.P438S|ELN_uc003tzu.2_Missense_Mutation_p.P438S|ELN_uc003tzv.2_Missense_Mutation_p.P423S|ELN_uc003tzx.2_Missense_Mutation_p.P423S|ELN_uc011kff.1_Missense_Mutation_p.P433S|ELN_uc003tzy.2_Missense_Mutation_p.P428S	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	433	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	CGGAGGTGTCCCGGGAGTTGG	0.637			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						44	82					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73474369	73474369	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73474369G>A	uc003tzw.2	+	23	1677	c.1586G>A	c.(1585-1587)GGA>GAA	p.G529E	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Missense_Mutation_p.G523E|ELN_uc003tzz.2_Missense_Mutation_p.G442E|ELN_uc003tzo.2_Missense_Mutation_p.G490E|ELN_uc003tzp.2_Missense_Mutation_p.G434E|ELN_uc003tzq.2_Missense_Mutation_p.G387E|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Missense_Mutation_p.G504E|ELN_uc003tzt.2_Missense_Mutation_p.G528E|ELN_uc003tzu.2_Missense_Mutation_p.G509E|ELN_uc003tzv.2_Missense_Mutation_p.G494E|ELN_uc003tzx.2_Missense_Mutation_p.G513E|ELN_uc011kff.1_Missense_Mutation_p.G523E|ELN_uc003tzy.2_Missense_Mutation_p.G499E	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	552	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	GGCCCTGGTGGAGTTGCAGGT	0.642			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						10	113					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73474816	73474816	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73474816C>T	uc003tzw.2	+	25	1841	c.1750C>T	c.(1750-1752)CCT>TCT	p.P584S	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Missense_Mutation_p.P578S|ELN_uc003tzz.2_Missense_Mutation_p.P497S|ELN_uc003tzo.2_Missense_Mutation_p.P530S|ELN_uc003tzp.2_Missense_Mutation_p.P489S|ELN_uc003tzq.2_Missense_Mutation_p.P442S|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Missense_Mutation_p.P559S|ELN_uc003tzt.2_Missense_Mutation_p.P583S|ELN_uc003tzu.2_Missense_Mutation_p.P564S|ELN_uc003tzv.2_Missense_Mutation_p.P549S|ELN_uc003tzx.2_Missense_Mutation_p.P568S|ELN_uc011kff.1_Missense_Mutation_p.P578S|ELN_uc003tzy.2_Missense_Mutation_p.P554S	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	607	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	TGCTGGTGTTCCTGGCTTCGG	0.627			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						27	52					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73477502	73477502	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73477502C>T	uc003tzw.2	+	27	1915	c.1824C>T	c.(1822-1824)GTC>GTT	p.V608V	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Silent_p.V602V|ELN_uc003tzz.2_Silent_p.V521V|ELN_uc003tzo.2_Silent_p.V554V|ELN_uc003tzp.2_Silent_p.V513V|ELN_uc003tzq.2_Silent_p.V466V|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Silent_p.V583V|ELN_uc003tzt.2_Silent_p.V607V|ELN_uc003tzu.2_Silent_p.V588V|ELN_uc003tzv.2_Silent_p.V573V|ELN_uc003tzx.2_Silent_p.V592V|ELN_uc011kff.1_Silent_p.V602V|ELN_uc003tzy.2_Silent_p.V578V	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	664	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	TGCCTGGGGTCCTTGGAGGGC	0.622			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						8	17					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73477983	73477983	+	Missense_Mutation	SNP	G	A	A	rs34852121		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73477983G>A	uc003tzw.2	+	29	2060	c.1969G>A	c.(1969-1971)GGA>AGA	p.G657R	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Missense_Mutation_p.G651R|ELN_uc003tzz.2_Missense_Mutation_p.G570R|ELN_uc003tzo.2_Missense_Mutation_p.G603R|ELN_uc003tzp.2_Missense_Mutation_p.G562R|ELN_uc003tzq.2_Missense_Mutation_p.G515R|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Missense_Mutation_p.G632R|ELN_uc003tzt.2_Missense_Mutation_p.G656R|ELN_uc003tzu.2_Missense_Mutation_p.G637R|ELN_uc003tzv.2_Missense_Mutation_p.G622R|ELN_uc003tzx.2_Missense_Mutation_p.G641R|ELN_uc011kff.1_Missense_Mutation_p.G651R|ELN_uc003tzy.2_Missense_Mutation_p.G627R	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	713	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	CGGAGGACTCGGAGTCGGAGG	0.557			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						18	109					0	0	1	0	0
LIMK1	3984	broad.mit.edu	37	7	73513451	73513451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73513451C>T	uc003uaa.1	+	5	656	c.491C>T	c.(490-492)ACC>ATC	p.T164I	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Missense_Mutation_p.T130I|LIMK1_uc003uac.1_5'UTR	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	164					actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				CACACCGTCACCCTGGTGTCC	0.647													53	124					0	0	1	0	0
LIMK1	3984	broad.mit.edu	37	7	73535261	73535261	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73535261C>T	uc003uaa.1	+	15	1828	c.1663C>T	c.(1663-1665)CGC>TGC	p.R555C	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Missense_Mutation_p.R521C	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	555	Protein kinase.				actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				CTACCTGCCCCGCACCATGGA	0.647													74	130					0	0	1	0	0
LAT2	7462	broad.mit.edu	37	7	73631186	73631186	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:73631186G>A	uc003uag.2	+	4	676	c.126G>A	c.(124-126)CAG>CAA	p.Q42Q	RFC2_uc011kfa.1_Intron|LAT2_uc003uah.2_Silent_p.Q42Q|LAT2_uc003uai.2_Silent_p.Q42Q|LAT2_uc010lbo.2_RNA	NM_032464	NP_115853	Q9GZY6	NTAL_HUMAN	linker for activation of T cells family member	42	Cytoplasmic (Potential).				B cell activation|B cell receptor signaling pathway|calcium-mediated signaling|mast cell degranulation	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding				0						TCTACCAGCAGAGAAGTCTGT	0.562													13	70					0	0	1	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	74005167	74005167	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:74005167C>T	uc003uaq.2	+	24	2850	c.2457C>T	c.(2455-2457)GGC>GGT	p.G819G	GTF2IRD1_uc010lbq.2_Silent_p.G836G|GTF2IRD1_uc003uap.2_Silent_p.G804G|GTF2IRD1_uc003uar.1_Silent_p.G804G	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	819	GTF2I-like 5.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						AGGCCCTGGGCCTGAACCGGC	0.607													16	29					0	0	1	0	0
WBSCR16	81554	broad.mit.edu	37	7	74470049	74470049	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:74470049G>A	uc003ubr.2	-	9	1316	c.1190C>T	c.(1189-1191)TCC>TTC	p.S397F	WBSCR16_uc010lca.2_Missense_Mutation_p.S200F|WBSCR16_uc010lcb.1_Missense_Mutation_p.S397F	NM_030798	NP_110425	Q96I51	WBS16_HUMAN	Williams-Beuren syndrome chromosome region 16	397	RCC1 5.										0						TCGGATGCGGGAAACCTGGAT	0.537													26	67					0	0	1	0	0
NCF1C	654817	broad.mit.edu	37	7	74582409	74582410	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:74582409_74582410GG>AA	uc003ubv.2	-	4	337_338	c.255_256CC>TT	c.(253-258)TCCCGC>TCTTGC	p.R86C	NCF1C_uc011kfn.1_Missense_Mutation_p.R86C|NCF1C_uc011kfo.1_Missense_Mutation_p.R84C	NR_003187				RecName: Full=Putative neutrophil cytosol factor 1C;          Short=NCF-1C; AltName: Full=Putative SH3 and PX domain-containing protein 1C;												0						TGGGGACAGCGGGAGATCTTGG	0.545													6	52					0	0	1	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130905	75130905	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:75130905G>A	uc011kfy.1	+	6	916	c.780G>A	c.(778-780)AGG>AGA	p.R260R		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	260	Arg-rich.										0						CGAGGGCCAGGAAGAACCGCT	0.592													97	281					0	0	1	0	0
HIP1	3092	broad.mit.edu	37	7	75167505	75167505	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:75167505G>A	uc003uds.1	-	31	3143	c.3102C>T	c.(3100-3102)ACC>ACT	p.T1034T	HIP1_uc011kfz.1_Silent_p.T860T	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	1034					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						ATTCTTTTTCGGTTACCACTT	0.418			T	PDGFRB	CMML								10	200					0	0	1	0	0
HIP1	3092	broad.mit.edu	37	7	75174037	75174037	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:75174037G>A	uc003uds.1	-	27	2763	c.2722C>T	c.(2722-2724)CAT>TAT	p.H908Y	HIP1_uc011kfz.1_Missense_Mutation_p.H734Y	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	908	Important for actin binding (By similarity).|I/LWEQ.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						GCAATTTCATGAGAACACACC	0.512			T	PDGFRB	CMML								15	44					0	0	1	0	0
HIP1	3092	broad.mit.edu	37	7	75192536	75192536	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:75192536G>A	uc003uds.1	-	10	876	c.835C>T	c.(835-837)CTG>TTG	p.L279L	HIP1_uc011kfz.1_Silent_p.L156L	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	279					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						AAGTACTGCAGGTTGCTGGAG	0.582			T	PDGFRB	CMML								9	72					0	0	1	0	0
HIP1	3092	broad.mit.edu	37	7	75203197	75203197	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:75203197G>A	uc003uds.1	-	8	655	c.614C>T	c.(613-615)TCC>TTC	p.S205F	HIP1_uc011kfz.1_Missense_Mutation_p.S82F	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	205					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						CATGTCCAGGGAGTTGAATAC	0.562			T	PDGFRB	CMML								14	30					0	0	1	0	0
STYXL1	51657	broad.mit.edu	37	7	75634657	75634657	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:75634657G>A	uc003uej.3	-	6	692	c.519C>T	c.(517-519)TTC>TTT	p.F173F	STYXL1_uc003uef.2_5'UTR|STYXL1_uc011kgf.1_Silent_p.F35F|STYXL1_uc011kgg.1_Silent_p.F25F|STYXL1_uc003ueh.2_Silent_p.F35F|STYXL1_uc003uek.3_Silent_p.F77F|STYXL1_uc003uel.2_Silent_p.F173F|STYXL1_uc003uem.2_Silent_p.F173F|STYXL1_uc010ldg.1_RNA|STYXL1_uc010ldh.1_Silent_p.F173F|STYXL1_uc003uen.1_Silent_p.F173F	NM_016086	NP_057170	Q9Y6J8	STYL1_HUMAN	map kinase phosphatase-like protein MK-STYX	173	Tyrosine-protein phosphatase.				intracellular signal transduction|protein dephosphorylation	intracellular	protein binding|protein tyrosine/serine/threonine phosphatase activity				0						AGGCTTGACTGAAATTGCCAA	0.468													32	87					0	0	1	0	0
MDH2	4191	broad.mit.edu	37	7	75689783	75689783	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:75689783C>T	uc003ueo.2	+	5	608	c.522C>T	c.(520-522)ATC>ATT	p.I174I	MDH2_uc003uep.2_Silent_p.I67I|MDH2_uc011kgh.1_Intron	NM_005918	NP_005909	P40926	MDHM_HUMAN	mitochondrial malate dehydrogenase precursor	174					gluconeogenesis|malate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus|plasma membrane	binding|L-malate dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					NADH(DB00157)	CCCTGGACATCGTCAGAGCCA	0.522													23	41					0	0	1	0	0
SRRM3	222183	broad.mit.edu	37	7	75894696	75894696	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:75894696C>T	uc010ldi.2	+	10	949	c.740C>T	c.(739-741)TCC>TTC	p.S247F	SRRM3_uc011kgi.1_5'UTR	NM_001110199	NP_001103669			serine/arginine repetitive matrix 3												0						CACACAGAGTCCCCAGGCCGG	0.642													22	45					0	0	1	0	0
SRRM3	222183	broad.mit.edu	37	7	75894779	75894779	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:75894779C>T	uc010ldi.2	+	10	1032	c.823C>T	c.(823-825)CCC>TCC	p.P275S	SRRM3_uc011kgi.1_5'UTR	NM_001110199	NP_001103669			serine/arginine repetitive matrix 3												0						TTCCAGATCTCCCAGCAGGTA	0.632													15	41					0	0	1	0	0
SRCRB4D	136853	broad.mit.edu	37	7	76027102	76027102	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76027102G>A	uc003ufb.2	-	6	949	c.601C>T	c.(601-603)CGA>TGA	p.R201*	ZP3_uc003ufc.3_5'UTR	NM_080744	NP_542782	Q8WTU2	SRB4D_HUMAN	scavenger receptor cysteine rich domain	201	SRCR 2.					extracellular region|membrane	scavenger receptor activity			pancreas(1)	1						ATCTCCACTCGGCCCTGACAC	0.711													4	14					0	0	1	0	0
SRCRB4D	136853	broad.mit.edu	37	7	76029657	76029657	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76029657C>T	uc003ufb.2	-	4	769	c.421G>A	c.(421-423)GGC>AGC	p.G141S	ZP3_uc003ufc.3_Intron	NM_080744	NP_542782	Q8WTU2	SRB4D_HUMAN	scavenger receptor cysteine rich domain	141	SRCR 1.					extracellular region|membrane	scavenger receptor activity			pancreas(1)	1						ACGCCCCAGCCGCGGCTGCCG	0.662													7	43					0	0	1	0	0
UPK3B	80761	broad.mit.edu	37	7	76140314	76140314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76140314C>T	uc003ufq.2	+	1	570	c.345C>T	c.(343-345)TTC>TTT	p.F115F	UPK3B_uc003ufo.2_Silent_p.F60F|UPK3B_uc010ldk.1_Silent_p.F60F	NM_030570	NP_085047	Q9BT76	UPK3B_HUMAN	uroplakin 3B isoform a	115	Lumenal (Potential).				negative regulation of gene expression	integral to membrane|plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(862;0.204)				GCTGTGTCTTCGATGGGCTTG	0.632													5	4					0	0	1	0	0
UPK3B	80761	broad.mit.edu	37	7	76141016	76141016	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76141016C>T	uc003ufq.2	+	2	668	c.443C>T	c.(442-444)CCG>CTG	p.P148L	UPK3B_uc003ufo.2_Missense_Mutation_p.P93L|UPK3B_uc010ldk.1_Missense_Mutation_p.P93L	NM_030570	NP_085047	Q9BT76	UPK3B_HUMAN	uroplakin 3B isoform a	148	Lumenal (Potential).				negative regulation of gene expression	integral to membrane|plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(862;0.204)				GCTGACATTCCGGCCTCCCCA	0.647													4	20					0	0	1	0	0
FGL2	10875	broad.mit.edu	37	7	76826243	76826243	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76826243C>T	uc003ugb.2	-	2	713	c.673G>A	c.(673-675)GAG>AAG	p.E225K	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	225	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						CTGTAGGTCTCACTGCTTCTT	0.428													43	133					0	0	1	0	0
FGL2	10875	broad.mit.edu	37	7	76828852	76828852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76828852C>T	uc003ugb.2	-	1	299	c.259G>A	c.(259-261)GAA>AAA	p.E87K	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	87	Potential.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						TTTACGATTTCCTTGAGGTTT	0.507													31	88					0	0	1	0	0
FGL2	10875	broad.mit.edu	37	7	76828970	76828970	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76828970C>T	uc003ugb.2	-	1	181	c.141G>A	c.(139-141)GGG>GGA	p.G47G	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	47					signal transduction	fibrinogen complex	receptor binding			skin(2)	2						CTTCGCATTTCCCTCTGCTTT	0.493													41	121					0	0	1	0	0
FGL2	10875	broad.mit.edu	37	7	76829014	76829014	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76829014C>T	uc003ugb.2	-	1	137	c.97G>A	c.(97-99)GAA>AAA	p.E33K	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	33					signal transduction	fibrinogen complex	receptor binding			skin(2)	2						TTTGCTCTTTCATCTTTAATT	0.488													20	109					0	0	1	0	0
PION	54103	broad.mit.edu	37	7	76955545	76955545	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76955545C>T	uc003ugf.2	-	23	1890	c.1811G>A	c.(1810-1812)CGG>CAG	p.R604Q	PION_uc011kgo.1_5'UTR|PION_uc003ugd.2_5'UTR	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	604					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						CATGAGCAGCCGCTGGTGGCT	0.512													23	69					0	0	1	0	0
PION	54103	broad.mit.edu	37	7	76958702	76958702	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:76958702C>T	uc003ugf.2	-	21	1760	c.1681G>A	c.(1681-1683)GGA>AGA	p.G561R	PION_uc003ugd.2_5'Flank|PION_uc003ugg.1_3'UTR	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	561					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						CTTCTTTTTCCTGTTTTCTAG	0.378													15	40					0	0	1	0	0
PION	54103	broad.mit.edu	37	7	77004407	77004407	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:77004407G>A	uc003ugf.2	-	11	832	c.753C>T	c.(751-753)CCC>CCT	p.P251P	PION_uc003ugg.1_Silent_p.P36P	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	251					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						ATATGTCCAAGGGTACTTCAA	0.318													11	40					0	0	1	0	0
PION	54103	broad.mit.edu	37	7	77006657	77006657	+	Silent	SNP	G	A	A	rs138204887	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:77006657G>A	uc003ugf.2	-	9	706	c.627C>T	c.(625-627)TTC>TTT	p.F209F	PION_uc003ugg.1_5'UTR	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	209					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						GAGCCCAAACGAAATCCTCAG	0.303													31	244					0	0	1	0	0
RSBN1L	222194	broad.mit.edu	37	7	77402549	77402549	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:77402549C>T	uc010ldt.1	+	6	1755	c.1711C>T	c.(1711-1713)CAT>TAT	p.H571Y	RSBN1L_uc003ugm.2_Missense_Mutation_p.H353Y	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	571						nucleus				ovary(1)	1						GACAAGAGCTCATGCAGATCA	0.423													28	66					0	0	1	0	0
PHTF2	57157	broad.mit.edu	37	7	77569557	77569557	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:77569557C>T	uc003ugs.3	+	13	1804	c.1678C>T	c.(1678-1680)CGC>TGC	p.R560C	PHTF2_uc003ugp.2_Missense_Mutation_p.R522C|PHTF2_uc003ugq.3_Missense_Mutation_p.R522C|PHTF2_uc010ldv.2_Missense_Mutation_p.R522C|PHTF2_uc003ugt.3_Missense_Mutation_p.R526C|PHTF2_uc003ugu.3_Missense_Mutation_p.R522C|PHTF2_uc010ldw.1_Missense_Mutation_p.R342C	NM_001127357	NP_001120829	Q8N3S3	PHTF2_HUMAN	putative homeodomain transcription factor 2	560					regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum|nucleus	DNA binding			ovary(1)	1						TTTTGTGGTTCGCGTGTCTCT	0.338													33	94					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	77764371	77764371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:77764371G>A	uc003ugx.2	-	17	3252	c.2998C>T	c.(2998-3000)CTT>TTT	p.L1000F	MAGI2_uc003ugy.2_Missense_Mutation_p.L986F|MAGI2_uc010ldx.1_Missense_Mutation_p.L593F	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1000	PDZ 5.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GTGACACTAAGACCTGCATCC	0.537													24	66					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	77885578	77885578	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:77885578G>A	uc003ugx.2	-	10	1983	c.1729C>T	c.(1729-1731)CAG>TAG	p.Q577*	MAGI2_uc003ugy.2_Nonsense_Mutation_p.Q577*|MAGI2_uc010ldx.1_Nonsense_Mutation_p.Q186*|MAGI2_uc010ldy.1_Nonsense_Mutation_p.Q186*|MAGI2_uc011kgr.1_Nonsense_Mutation_p.Q409*|MAGI2_uc011kgs.1_Nonsense_Mutation_p.Q414*	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	577						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				CCGTCTAGCTGACCATCAGTT	0.488													16	41					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	77973147	77973147	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:77973147C>T	uc003ugx.2	-	9	1610	c.1356G>A	c.(1354-1356)GTG>GTA	p.V452V	MAGI2_uc003ugy.2_Silent_p.V452V|MAGI2_uc010ldx.1_Silent_p.V61V|MAGI2_uc010ldy.1_Silent_p.V61V|MAGI2_uc011kgr.1_Silent_p.V284V|MAGI2_uc011kgs.1_Silent_p.V289V	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	452	PDZ 2.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TCACACTTTTCACCTGCAGAA	0.438													25	61					0	0	1	0	0
GNAT3	346562	broad.mit.edu	37	7	80108268	80108268	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:80108268C>T	uc011kgu.1	-	4	350	c.350G>A	c.(349-351)GGT>GAT	p.G117D	CD36_uc003uhc.2_Intron	NM_001102386	NP_001095856	A8MTJ3	GNAT3_HUMAN	guanine nucleotide binding protein, alpha	117					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction|sensory perception of sweet taste|sensory perception of umami taste	cytoplasm|heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1						TGTCATGCCACCATCTTCCAG	0.418													33	103					0	0	1	0	0
SEMA3C	10512	broad.mit.edu	37	7	80374441	80374441	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:80374441G>A	uc003uhj.2	-	18	2587	c.2025C>T	c.(2023-2025)TCC>TCT	p.S675S	SEMA3C_uc011kgw.1_Silent_p.S693S	NM_006379	NP_006370	Q99985	SEM3C_HUMAN	semaphorin 3C precursor	675					immune response|response to drug	membrane	receptor activity			ovary(1)	1						AGGTCCATGGGGACCATTTGT	0.463													36	75					0	0	1	0	0
HGF	3082	broad.mit.edu	37	7	81381515	81381515	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:81381515C>T	uc003uhl.2	-	5	711	c.546G>A	c.(544-546)GGG>GGA	p.G182G	HGF_uc003uhm.2_Silent_p.G177G|HGF_uc003uhn.1_Silent_p.G182G|HGF_uc003uho.1_Silent_p.G177G|HGF_uc003uhp.2_Silent_p.G182G	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	182	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						CCCCTTCTTCCCCTCGAGGAT	0.433													8	103					0	0	1	0	0
HGF	3082	broad.mit.edu	37	7	81381519	81381519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:81381519C>T	uc003uhl.2	-	5	707	c.542G>A	c.(541-543)CGA>CAA	p.R181Q	HGF_uc003uhm.2_Missense_Mutation_p.R176Q|HGF_uc003uhn.1_Missense_Mutation_p.R181Q|HGF_uc003uho.1_Missense_Mutation_p.R176Q|HGF_uc003uhp.2_Missense_Mutation_p.R181Q	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	181	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TTCTTCCCCTCGAGGATTTCG	0.433													20	93					0	0	1	0	0
CACNA2D1	781	broad.mit.edu	37	7	81599243	81599243	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:81599243C>T	uc003uhr.1	-	28	2518	c.2262G>A	c.(2260-2262)AGG>AGA	p.R754R	CACNA2D1_uc011kgy.1_Intron	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	766	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding	p.R754T(1)		ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	TATCTAGGCTCCTTTTATAGA	0.338													21	81					0	0	1	0	0
CACNA2D1	781	broad.mit.edu	37	7	81643776	81643776	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:81643776G>A	uc003uhr.1	-	13	1419	c.1163C>T	c.(1162-1164)TCA>TTA	p.S388L	uc003uhs.1_Intron	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	388	Extracellular (Potential).|VWFA.					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	TTGACCAACTGAAAACGTGAA	0.308													13	46					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544322	82544322	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82544322G>A	uc003uhx.2	-	7	13269	c.12980C>T	c.(12979-12981)TCC>TTC	p.S4327F	PCLO_uc003uhv.2_Missense_Mutation_p.S4327F|PCLO_uc010lec.2_Missense_Mutation_p.S1292F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4258	Ser-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATGACTAAAGGAAACATCTAG	0.393													21	43					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544344	82544344	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82544344C>T	uc003uhx.2	-	7	13247	c.12958G>A	c.(12958-12960)GAG>AAG	p.E4320K	PCLO_uc003uhv.2_Missense_Mutation_p.E4320K|PCLO_uc010lec.2_Missense_Mutation_p.E1285K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4251	Ser-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCTTCAGCCTCTTGAGCTTTC	0.368													14	28					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544596	82544596	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82544596G>A	uc003uhx.2	-	7	12995	c.12706C>T	c.(12706-12708)CTC>TTC	p.L4236F	PCLO_uc003uhv.2_Missense_Mutation_p.L4236F|PCLO_uc010lec.2_Missense_Mutation_p.L1201F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4167					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTTGAAGGAGCCTTGCCCTG	0.398													13	41					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82545094	82545094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82545094C>T	uc003uhx.2	-	7	12497	c.12208G>A	c.(12208-12210)GAA>AAA	p.E4070K	PCLO_uc003uhv.2_Missense_Mutation_p.E4070K|PCLO_uc010lec.2_Missense_Mutation_p.E1035K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4001					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGATCCTTTTCATGAAGGCTA	0.448													3	17					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82578909	82578909	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82578909G>A	uc003uhx.2	-	6	11284	c.10995C>T	c.(10993-10995)CCC>CCT	p.P3665P	PCLO_uc003uhv.2_Silent_p.P3665P|PCLO_uc010lec.2_Silent_p.P630P	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3596					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GACTTGCTGGGGGAACTTTAG	0.478													27	284					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82578963	82578963	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82578963G>A	uc003uhx.2	-	6	11230	c.10941C>T	c.(10939-10941)CTC>CTT	p.L3647L	PCLO_uc003uhv.2_Silent_p.L3647L|PCLO_uc010lec.2_Silent_p.L612L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3578					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TATCATCAGGGAGGGGTTTTT	0.473													59	182					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82579556	82579556	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82579556C>T	uc003uhx.2	-	6	10637	c.10348G>A	c.(10348-10350)GAA>AAA	p.E3450K	PCLO_uc003uhv.2_Missense_Mutation_p.E3450K|PCLO_uc010lec.2_Missense_Mutation_p.E415K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3381					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTGGCATCTTCGTCATCCGTT	0.438													30	68					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82580119	82580119	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82580119G>A	uc003uhx.2	-	6	10074	c.9785C>T	c.(9784-9786)TCT>TTT	p.S3262F	PCLO_uc003uhv.2_Missense_Mutation_p.S3262F|PCLO_uc010lec.2_Missense_Mutation_p.S227F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3193	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGCTTCATAGACTGCAGCTC	0.478													13	135					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82582174	82582174	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82582174G>A	uc003uhx.2	-	5	8384	c.8095C>T	c.(8095-8097)CCT>TCT	p.P2699S	PCLO_uc003uhv.2_Missense_Mutation_p.P2699S|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2630					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGCTCTGGAGGAATTGTTATG	0.403													17	44					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82582563	82582563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82582563G>A	uc003uhx.2	-	5	7995	c.7706C>T	c.(7705-7707)TCA>TTA	p.S2569L	PCLO_uc003uhv.2_Missense_Mutation_p.S2569L|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2500					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAATCTTGGTGAAGACTTGTT	0.403													48	131					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82583248	82583248	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82583248C>T	uc003uhx.2	-	5	7310	c.7021G>A	c.(7021-7023)GAT>AAT	p.D2341N	PCLO_uc003uhv.2_Missense_Mutation_p.D2341N|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2272					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTGGGTGATCAAACACGGTT	0.423													38	100					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82583815	82583815	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82583815C>T	uc003uhx.2	-	5	6743	c.6454G>A	c.(6454-6456)GAA>AAA	p.E2152K	PCLO_uc003uhv.2_Missense_Mutation_p.E2152K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2083					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTTGAATTTCTCTTGTATAA	0.413													33	63					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82583817	82583817	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82583817C>T	uc003uhx.2	-	5	6741	c.6452G>A	c.(6451-6453)AGA>AAA	p.R2151K	PCLO_uc003uhv.2_Missense_Mutation_p.R2151K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2082					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGAATTTCTCTTGTATAATC	0.413													21	74					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82584153	82584153	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82584153C>T	uc003uhx.2	-	5	6405	c.6116G>A	c.(6115-6117)AGC>AAC	p.S2039N	PCLO_uc003uhv.2_Missense_Mutation_p.S2039N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1970					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TATCTCATGGCTTTCTGGGAT	0.388													5	61					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82584325	82584325	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82584325C>T	uc003uhx.2	-	5	6233	c.5944G>A	c.(5944-5946)GGA>AGA	p.G1982R	PCLO_uc003uhv.2_Missense_Mutation_p.G1982R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1913					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGCATAAATCCATTTTCTTCT	0.363													37	158					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82584932	82584932	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82584932C>T	uc003uhx.2	-	5	5626	c.5337G>A	c.(5335-5337)TTG>TTA	p.L1779L	PCLO_uc003uhv.2_Silent_p.L1779L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1710					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTCCTCTCTCAATTCTTCTT	0.393													39	86					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82585375	82585375	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82585375C>T	uc003uhx.2	-	5	5183	c.4894G>A	c.(4894-4896)GAA>AAA	p.E1632K	PCLO_uc003uhv.2_Missense_Mutation_p.E1632K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1563					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCATCGTCTTCATCATGCCAT	0.428													83	200					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82585473	82585473	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82585473C>T	uc003uhx.2	-	5	5085	c.4796G>A	c.(4795-4797)GGA>GAA	p.G1599E	PCLO_uc003uhv.2_Missense_Mutation_p.G1599E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1530					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTGCCTTTTCCCTTTGTTTC	0.428													51	172					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82585475	82585475	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82585475C>T	uc003uhx.2	-	5	5083	c.4794G>A	c.(4792-4794)AAG>AAA	p.K1598K	PCLO_uc003uhv.2_Silent_p.K1598K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1529					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGCCTTTTCCCTTTGTTTCTT	0.433													52	173					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82585704	82585704	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82585704G>A	uc003uhx.2	-	5	4854	c.4565C>T	c.(4564-4566)TCA>TTA	p.S1522L	PCLO_uc003uhv.2_Missense_Mutation_p.S1522L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1453					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGAACAGGTGAGTTTTCACT	0.423													18	31					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82595399	82595399	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82595399G>A	uc003uhx.2	-	4	3994	c.3705C>T	c.(3703-3705)CTC>CTT	p.L1235L	PCLO_uc003uhv.2_Silent_p.L1235L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1174					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTCTTCTAGGAGTGGCTTTT	0.388													94	281					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82763915	82763915	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82763915C>T	uc003uhx.2	-	3	3240	c.2951G>A	c.(2950-2952)GGT>GAT	p.G984D	PCLO_uc003uhv.2_Missense_Mutation_p.G984D	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	930	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGTGCTTGACCTGTGGATTT	0.512													21	33					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82764008	82764008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82764008C>T	uc003uhx.2	-	3	3147	c.2858G>A	c.(2857-2859)GGA>GAA	p.G953E	PCLO_uc003uhv.2_Missense_Mutation_p.G953E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	899	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGAATGAGGTCCAGGTTGGCC	0.522													11	26					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82784186	82784186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82784186G>A	uc003uhx.2	-	2	2060	c.1771C>T	c.(1771-1773)CTT>TTT	p.L591F	PCLO_uc003uhv.2_Missense_Mutation_p.L591F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	537	C4-type (Potential).|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTATTGCAAAGAGGACAGATG	0.453													104	296					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82784504	82784504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82784504C>T	uc003uhx.2	-	2	1742	c.1453G>A	c.(1453-1455)GGC>AGC	p.G485S	PCLO_uc003uhv.2_Missense_Mutation_p.G485S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	435	Gln-rich.|Pro-rich.|10 X 10 AA tandem approximate repeats of P-A-K-P-Q-P-Q-Q-P-X.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTGCTGGGCCAGGCTGTTGA	0.607													40	106					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82784638	82784638	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82784638G>A	uc003uhx.2	-	2	1608	c.1319C>T	c.(1318-1320)CCA>CTA	p.P440L	PCLO_uc003uhv.2_Missense_Mutation_p.P440L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGCTGAACTGGAGTCTTTGT	0.577													22	114					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82784861	82784861	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82784861G>A	uc003uhx.2	-	2	1385	c.1096C>T	c.(1096-1098)CTT>TTT	p.L366F	PCLO_uc003uhv.2_Missense_Mutation_p.L366F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCAGGACCAAGAGGCTGAGCT	0.577													8	38					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82785261	82785261	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82785261C>T	uc003uhx.2	-	2	985	c.696G>A	c.(694-696)CAG>CAA	p.Q232Q	PCLO_uc003uhv.2_Silent_p.Q232Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	232	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAGTGCCATCCTGCTGAAGCG	0.468													17	31					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82785568	82785568	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82785568G>A	uc003uhx.2	-	2	678	c.389C>T	c.(388-390)CCT>CTT	p.P130L	PCLO_uc003uhv.2_Missense_Mutation_p.P130L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	130					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AATAGTGGAAGGACTCCTCCC	0.478													27	82					0	0	1	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997234	82997234	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:82997234G>A	uc003uhy.1	-	17	2462	c.1996C>T	c.(1996-1998)CGT>TGT	p.R666C		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	666	Ig-like C2-type.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				GTGATTTTACGGACCGTATGG	0.463													39	76					0	0	1	0	0
SEMA3E	9723	broad.mit.edu	37	7	83023654	83023654	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:83023654C>T	uc003uhy.1	-	13	1925	c.1459G>A	c.(1459-1461)GAT>AAT	p.D487N		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	487	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				GGAACTGGATCCTGAAATTTT	0.249													16	38					0	0	1	0	0
SEMA3E	9723	broad.mit.edu	37	7	83095854	83095854	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:83095854C>T	uc003uhy.1	-	4	866	c.400G>A	c.(400-402)GGT>AGT	p.G134S		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	134	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				GCTCCAGTACCACAGGTCAGA	0.383													26	58					0	0	1	0	0
SEMA3A	10371	broad.mit.edu	37	7	83591047	83591047	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:83591047C>T	uc003uhz.2	-	17	2271	c.1956G>A	c.(1954-1956)GTG>GTA	p.V652V		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	652	Ig-like C2-type.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						ACCCATGTTCCACCGCATGGC	0.438													28	82					0	0	1	0	0
SEMA3A	10371	broad.mit.edu	37	7	83610752	83610752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:83610752G>A	uc003uhz.2	-	14	1852	c.1537C>T	c.(1537-1539)CCT>TCT	p.P513S		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	513	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						CGGTGTAAAGGGAGCTGGGCA	0.463													6	50					0	0	1	0	0
SEMA3A	10371	broad.mit.edu	37	7	83636688	83636688	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:83636688G>A	uc003uhz.2	-	10	1436	c.1121C>T	c.(1120-1122)CCC>CTC	p.P374L		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	374	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						CCGTGGATAGGGGACTCTTCC	0.423													44	112					0	0	1	0	0
SEMA3A	10371	broad.mit.edu	37	7	83675644	83675644	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:83675644G>A	uc003uhz.2	-	6	978	c.663C>T	c.(661-663)CTC>CTT	p.L221L		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	221	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						ACCTACCATTGAGCCACCTGG	0.423													53	113					0	0	1	0	0
SEMA3A	10371	broad.mit.edu	37	7	83764144	83764144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:83764144G>A	uc003uhz.2	-	2	551	c.236C>T	c.(235-237)TCA>TTA	p.S79L		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	79	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						CAGGTCGAATGAAAATATGTG	0.358													22	63					0	0	1	0	0
SEMA3D	223117	broad.mit.edu	37	7	84628811	84628811	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:84628811C>T	uc003uic.2	-	17	2319	c.2279G>A	c.(2278-2280)CGA>CAA	p.R760Q	SEMA3D_uc010led.2_Missense_Mutation_p.R760Q|SEMA3D_uc003uib.2_Missense_Mutation_p.R399Q	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	760	Arg/Lys-rich (basic).				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						TCTTCGATTTCGTTTCTTCTT	0.453													32	78					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86394637	86394637	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86394637G>A	uc003uid.2	+	2	1275	c.176G>A	c.(175-177)CGA>CAA	p.R59Q	GRM3_uc010lef.2_Missense_Mutation_p.R57Q|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	59	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GAATGTGGGCGAATCAATGAA	0.418													29	117					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86394822	86394822	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86394822G>A	uc003uid.2	+	2	1460	c.361G>A	c.(361-363)GAT>AAT	p.D121N	GRM3_uc010lef.2_Missense_Mutation_p.D119N|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	121	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GACAAAAGTGGATGAAGCTGA	0.438													46	146					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86415927	86415927	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86415927C>T	uc003uid.2	+	3	1918	c.819C>T	c.(817-819)GTC>GTT	p.V273V	GRM3_uc010lef.2_Silent_p.V271V|GRM3_uc010leg.2_Silent_p.V145V|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	273	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GCGTCGTGGTCCTCTTCATGC	0.672													8	74					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86415993	86415993	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86415993C>T	uc003uid.2	+	3	1984	c.885C>T	c.(883-885)TTC>TTT	p.F295F	GRM3_uc010lef.2_Silent_p.F293F|GRM3_uc010leg.2_Silent_p.F167F|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	295	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ATGCCTCCTTCACCTGGGTGG	0.677													29	55					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86416107	86416107	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86416107C>T	uc003uid.2	+	3	2098	c.999C>T	c.(997-999)TTC>TTT	p.F333F	GRM3_uc010lef.2_Silent_p.F331F|GRM3_uc010leg.2_Silent_p.F205F|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	333	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TCCGCCAGTTCGACCGCTACT	0.627													17	25					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86416200	86416200	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86416200G>A	uc003uid.2	+	3	2191	c.1092G>A	c.(1090-1092)CAG>CAA	p.Q364Q	GRM3_uc010lef.2_Silent_p.Q362Q|GRM3_uc010leg.2_Silent_p.Q236Q|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	364	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GCAGCCTCCAGAACAAACGCA	0.567													20	43					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86416290	86416290	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86416290G>A	uc003uid.2	+	3	2281	c.1182G>A	c.(1180-1182)GTG>GTA	p.V394V	GRM3_uc010lef.2_Silent_p.V392V|GRM3_uc010leg.2_Silent_p.V266V|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	394	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TGTTTGTGGTGAACGCGGTGT	0.547													32	91					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86468644	86468644	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86468644C>T	uc003uid.2	+	4	2913	c.1814C>T	c.(1813-1815)CCC>CTC	p.P605L	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.P477L|GRM3_uc010leh.2_Missense_Mutation_p.P197L	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	605	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AACAACACACCCTTGGTCAAA	0.483													23	85					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86493638	86493638	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86493638G>A	uc003uid.2	+	6	3706	c.2607G>A	c.(2605-2607)CGG>CGA	p.R869R	GRM3_uc010lef.2_Missense_Mutation_p.G512R|GRM3_uc010leg.2_Silent_p.R741R|GRM3_uc010leh.2_Silent_p.R461R	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	869	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GCAATGGGCGGGAAGTCCTCG	0.438													39	136					0	0	1	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86537848	86537848	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86537848C>T	uc011kha.1	-	17	2556	c.2371G>A	c.(2371-2373)GAA>AAA	p.E791K	KIAA1324L_uc003uif.1_Missense_Mutation_p.E551K|KIAA1324L_uc011kgz.1_Missense_Mutation_p.E677K|KIAA1324L_uc003uie.2_Missense_Mutation_p.E624K	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	791	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					AATGTGGTTTCAACTGTGACT	0.289													34	63					0	0	1	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86542418	86542418	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:86542418C>T	uc011kha.1	-	14	2019	c.1834G>A	c.(1834-1836)GAA>AAA	p.E612K	KIAA1324L_uc003uif.1_Missense_Mutation_p.E372K|KIAA1324L_uc011kgz.1_Missense_Mutation_p.E498K|KIAA1324L_uc003uie.2_Missense_Mutation_p.E445K	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	612	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					CCCGACTGTTCAGAACCGAGG	0.517													12	58					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87037411	87037411	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87037411C>T	uc003uiv.1	-	25	3297	c.3221G>A	c.(3220-3222)GGG>GAG	p.G1074E	ABCB4_uc003uiw.1_Missense_Mutation_p.G1074E|ABCB4_uc003uix.1_Missense_Mutation_p.G1027E	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1074	ABC transporter 2.|Cytoplasmic (By similarity).|ATP 2 (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CGTGCTCTTCCCACAGCCACT	0.557													25	118					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87041247	87041247	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87041247G>A	uc003uiv.1	-	23	2962	c.2886C>T	c.(2884-2886)CTC>CTT	p.L962L	ABCB4_uc003uiw.1_Silent_p.L962L|ABCB4_uc003uix.1_Intron	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	962	Extracellular (By similarity).|ABC transmembrane type-1 2.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CATTCACAATGAGATATGCAC	0.323													22	55					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87069667	87069667	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87069667C>T	uc003uiv.1	-	13	1484	c.1408G>A	c.(1408-1410)GAA>AAA	p.E470K	ABCB4_uc003uiw.1_Missense_Mutation_p.E470K|ABCB4_uc003uix.1_Missense_Mutation_p.E470K	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	470	ABC transporter 1.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CCAATGATTTCCCTCAGATAG	0.358													28	50					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87082389	87082389	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87082389G>A	uc003uiv.1	-	6	483	c.407C>T	c.(406-408)TCA>TTA	p.S136L	ABCB4_uc003uiw.1_Missense_Mutation_p.S136L|ABCB4_uc003uix.1_Missense_Mutation_p.S136L|ABCB4_uc003uiy.2_Missense_Mutation_p.S136L	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	136	Helical; (By similarity).|ABC transmembrane type-1 1.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					AGTCCAAAATGAAACTTGTAT	0.388													35	90					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87092091	87092091	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87092091C>T	uc003uiv.1	-	4	345	c.269G>A	c.(268-270)GGA>GAA	p.G90E	ABCB4_uc003uiw.1_Missense_Mutation_p.G90E|ABCB4_uc003uix.1_Missense_Mutation_p.G90E|ABCB4_uc003uiy.2_Missense_Mutation_p.G90E	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	90	Extracellular (By similarity).|ABC transmembrane type-1 1.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GGAGAAGTTTCCTGCAGTATC	0.388													16	63					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87092147	87092147	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87092147G>A	uc003uiv.1	-	4	289	c.213C>T	c.(211-213)CTC>CTT	p.L71L	ABCB4_uc003uiw.1_Silent_p.L71L|ABCB4_uc003uix.1_Silent_p.L71L|ABCB4_uc003uiy.2_Silent_p.L71L	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	71	ABC transmembrane type-1 1.|Helical; (By similarity).			IMAIAHGSGLP -> RGSSRVDLQAC (in Ref. 5; CAA84542).	cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TCATGAGGGGGAGACCTGATC	0.378													18	60					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87145863	87145863	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87145863G>A	uc003uiz.1	-	25	3464	c.3046C>T	c.(3046-3048)CCT>TCT	p.P1016S	ABCB1_uc011khc.1_Missense_Mutation_p.P952S	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	1016	Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TCAATCAAAGGGGTTTTTTCA	0.448													31	107					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87170679	87170679	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87170679G>A	uc003uiz.1	-	19	2731	c.2313C>T	c.(2311-2313)TTC>TTT	p.F771F	ABCB1_uc011khc.1_Silent_p.F707F	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	771	Helical; (Potential).|ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTACCTGAAGGAAAAATGTAA	0.299													19	42					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87173491	87173491	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87173491C>T	uc003uiz.1	-	18	2583	c.2165G>A	c.(2164-2166)GGA>GAA	p.G722E	ABCB1_uc011khc.1_Missense_Mutation_p.G658E	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	722	ABC transmembrane type-1 2.|Helical; (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity	p.G722V(1)		ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTGCAGGCCTCCATTTATAAT	0.358													29	55					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87175226	87175226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87175226C>T	uc003uiz.1	-	16	2258	c.1840G>A	c.(1840-1842)GAA>AAA	p.E614K	ABCB1_uc011khc.1_Missense_Mutation_p.E550K	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	614	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTCATGAGTTCATCATGATTT	0.383													29	90					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87179256	87179256	+	Missense_Mutation	SNP	G	A	A	rs142600685	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87179256G>A	uc003uiz.1	-	14	1883	c.1465C>T	c.(1465-1467)CGC>TGC	p.R489C	ABCB1_uc011khc.1_Missense_Mutation_p.R425C	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	489	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CGGCCATAGCGAATGTTTTCA	0.428													29	225					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87179319	87179319	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87179319C>T	uc003uiz.1	-	14	1820	c.1402G>A	c.(1402-1404)GAA>AAA	p.E468K	ABCB1_uc011khc.1_Missense_Mutation_p.E404K	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	468	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CCAATGATTTCCCGTAGAAAC	0.408													36	110					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87180118	87180118	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87180118C>T	uc003uiz.1	-	11	1454	c.1036G>A	c.(1036-1038)GGA>AGA	p.G346R	ABCB1_uc011khc.1_Missense_Mutation_p.G282R	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	346	ABC transmembrane type-1 1.|Helical; (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	GATGCCTGTCCAACACTAAAA	0.368													31	58					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87195420	87195420	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87195420G>A	uc003uiz.1	-	8	1086	c.668C>T	c.(667-669)CCT>CTT	p.P223L	ABCB1_uc011khc.1_Missense_Mutation_p.P159L	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	223	ABC transmembrane type-1 1.|Helical; (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TCCAAGAACAGGACTGATGGC	0.463													22	57					0	0	1	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87329760	87329760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87329760G>A	uc003ujb.2	+	4	724	c.313G>A	c.(313-315)GAA>AAA	p.E105K	ABCB1_uc003uiz.1_Intron|ABCB1_uc003uja.1_Intron|ABCB1_uc010lei.1_Intron|RUNDC3B_uc011khd.1_Missense_Mutation_p.E88K|RUNDC3B_uc011khe.1_Missense_Mutation_p.E88K|RUNDC3B_uc003ujc.2_Missense_Mutation_p.E88K|RUNDC3B_uc003ujd.2_Missense_Mutation_p.E10K	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	105	RUN.									skin(1)	1	Esophageal squamous(14;0.00164)					GTTTGGTTATGAAAGTCCTCG	0.338													12	35					0	0	1	0	0
SLC25A40	55972	broad.mit.edu	37	7	87466116	87466116	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87466116G>A	uc003uje.2	-	11	1184	c.833C>T	c.(832-834)CCT>CTT	p.P278L		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	278	Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					CATATGCAAAGGCATAGAAAC	0.299													27	47					0	0	1	0	0
SLC25A40	55972	broad.mit.edu	37	7	87487997	87487997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87487997G>A	uc003uje.2	-	3	397	c.46C>T	c.(46-48)CTT>TTT	p.L16F		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	16	Solcar 1.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					ATTTGTTGAAGAGGTGTCACT	0.323													18	49					0	0	1	0	0
ADAM22	53616	broad.mit.edu	37	7	87757920	87757920	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87757920C>T	uc003ujn.2	+	9	761	c.682C>T	c.(682-684)CGT>TGT	p.R228C	ADAM22_uc003uji.1_Missense_Mutation_p.R227C|ADAM22_uc003ujj.1_Missense_Mutation_p.R228C|ADAM22_uc003ujk.1_Missense_Mutation_p.R228C|ADAM22_uc003ujl.1_Missense_Mutation_p.R228C|ADAM22_uc003ujm.2_Missense_Mutation_p.R228C|ADAM22_uc003ujo.2_Missense_Mutation_p.R228C|ADAM22_uc003ujp.1_Missense_Mutation_p.R280C	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	228	Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			GTTACAGCTTCGTCGATATCC	0.368													38	80					0	0	1	0	0
ADAM22	53616	broad.mit.edu	37	7	87772351	87772351	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87772351C>T	uc003ujn.2	+	15	1310	c.1231C>T	c.(1231-1233)CCT>TCT	p.P411S	ADAM22_uc003ujk.1_Missense_Mutation_p.P411S|ADAM22_uc003ujl.1_Missense_Mutation_p.P411S|ADAM22_uc003ujm.2_Missense_Mutation_p.P411S|ADAM22_uc003ujo.2_Missense_Mutation_p.P411S|ADAM22_uc003ujp.1_Missense_Mutation_p.P463S	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	411	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			CTATTATCTTCCTAAAAAGTT	0.343													38	105					0	0	1	0	0
ADAM22	53616	broad.mit.edu	37	7	87772364	87772364	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87772364C>T	uc003ujn.2	+	15	1323	c.1244C>T	c.(1243-1245)ACC>ATC	p.T415I	ADAM22_uc003ujk.1_Missense_Mutation_p.T415I|ADAM22_uc003ujl.1_Missense_Mutation_p.T415I|ADAM22_uc003ujm.2_Missense_Mutation_p.T415I|ADAM22_uc003ujo.2_Missense_Mutation_p.T415I|ADAM22_uc003ujp.1_Missense_Mutation_p.T467I	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	415	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			AAAAAGTTCACCCAGTGTAAT	0.358													32	127					0	0	1	0	0
STEAP4	79689	broad.mit.edu	37	7	87912231	87912231	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87912231G>A	uc003ujs.2	-	3	814	c.709C>T	c.(709-711)CGT>TGT	p.R237C	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Missense_Mutation_p.R237C	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	237					fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					ATAGCCATACGAAATGTATTA	0.363													31	99					0	0	1	0	0
STEAP4	79689	broad.mit.edu	37	7	87913508	87913508	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:87913508C>T	uc003ujs.2	-	2	182	c.77G>A	c.(76-78)GGA>GAA	p.G26E	STEAP4_uc010lek.2_Missense_Mutation_p.G26E|STEAP4_uc003ujt.2_Missense_Mutation_p.G26E	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	26					fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					ATCACCAGTTCCAAAAATACA	0.383													16	78					0	0	1	0	0
MGC26647	219557	broad.mit.edu	37	7	88423588	88423588	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:88423588G>A	uc003ujv.2	-	2	851	c.669C>T	c.(667-669)TTC>TTT	p.F223F	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	223											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			CCGGGTCCATGAATTCTTCGG	0.438													33	69					0	0	1	0	0
ZNF804B	219578	broad.mit.edu	37	7	88847478	88847478	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:88847478G>A	uc011khi.1	+	2	656	c.118G>A	c.(118-120)GAA>AAA	p.E40K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	40						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GGATTTTGCAGAAAAGAAGTC	0.348										HNSCC(36;0.09)			26	70					0	0	1	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965048	88965048	+	Missense_Mutation	SNP	G	A	A	rs144693443	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:88965048G>A	uc011khi.1	+	4	3290	c.2752G>A	c.(2752-2754)GGA>AGA	p.G918R		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	918						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CACTGCAGAAGGAGAGAGGAC	0.423										HNSCC(36;0.09)			25	120					0	0	1	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965258	88965258	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:88965258G>A	uc011khi.1	+	4	3500	c.2962G>A	c.(2962-2964)GAG>AAG	p.E988K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	988						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GTATGCAAGTGAGAGCAGAAA	0.398										HNSCC(36;0.09)			38	71					0	0	1	0	0
STEAP2	261729	broad.mit.edu	37	7	89854483	89854483	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:89854483G>A	uc003ujz.2	+	2	480	c.87G>A	c.(85-87)AGG>AGA	p.R29R	STEAP2_uc003ujy.2_Silent_p.R71R|STEAP2_uc010len.2_Silent_p.R29R|STEAP2_uc003uka.2_Silent_p.R29R|STEAP2_uc003ukb.2_Silent_p.R29R|STEAP2_uc003ukc.2_Silent_p.R29R|STEAP2_uc003ukd.2_Silent_p.R29R	NM_152999	NP_694544	Q8NFT2	STEA2_HUMAN	six transmembrane epithelial antigen of the	29					electron transport chain|endocytosis|Golgi to plasma membrane transport|ion transport|iron ion homeostasis|regulated secretory pathway|response to hormone stimulus	cytosol|early endosome|endosome membrane|integral to Golgi membrane|plasma membrane|trans-Golgi network transport vesicle|vesicular fraction	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity|transporter activity			ovary(2)	2	all_hematologic(106;0.112)					AAGATGCAAGGAAGGTCACTG	0.408													35	125					0	0	1	0	0
STEAP2	261729	broad.mit.edu	37	7	89854527	89854527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:89854527C>T	uc003ujz.2	+	2	524	c.131C>T	c.(130-132)TCC>TTC	p.S44F	STEAP2_uc003ujy.2_Missense_Mutation_p.S86F|STEAP2_uc010len.2_Missense_Mutation_p.S44F|STEAP2_uc003uka.2_Missense_Mutation_p.S44F|STEAP2_uc003ukb.2_Missense_Mutation_p.S44F|STEAP2_uc003ukc.2_Missense_Mutation_p.S44F|STEAP2_uc003ukd.2_Missense_Mutation_p.S44F	NM_152999	NP_694544	Q8NFT2	STEA2_HUMAN	six transmembrane epithelial antigen of the	44					electron transport chain|endocytosis|Golgi to plasma membrane transport|ion transport|iron ion homeostasis|regulated secretory pathway|response to hormone stimulus	cytosol|early endosome|endosome membrane|integral to Golgi membrane|plasma membrane|trans-Golgi network transport vesicle|vesicular fraction	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity|transporter activity			ovary(2)	2	all_hematologic(106;0.112)					TTTGCCAAATCCTTGACCATT	0.388													44	93					0	0	1	0	0
STEAP2	261729	broad.mit.edu	37	7	89854724	89854724	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:89854724G>A	uc003ujz.2	+	2	721	c.328G>A	c.(328-330)GGT>AGT	p.G110S	STEAP2_uc003ujy.2_Missense_Mutation_p.G152S|STEAP2_uc010len.2_Missense_Mutation_p.G110S|STEAP2_uc003uka.2_Missense_Mutation_p.G110S|STEAP2_uc003ukb.2_Missense_Mutation_p.G110S|STEAP2_uc003ukc.2_Missense_Mutation_p.G110S|STEAP2_uc003ukd.2_Missense_Mutation_p.G110S	NM_152999	NP_694544	Q8NFT2	STEA2_HUMAN	six transmembrane epithelial antigen of the	110					electron transport chain|endocytosis|Golgi to plasma membrane transport|ion transport|iron ion homeostasis|regulated secretory pathway|response to hormone stimulus	cytosol|early endosome|endosome membrane|integral to Golgi membrane|plasma membrane|trans-Golgi network transport vesicle|vesicular fraction	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity|transporter activity			ovary(2)	2	all_hematologic(106;0.112)					TCTGCTTGTGGGTAAAATCCT	0.378													70	142					0	0	1	0	0
GTPBP10	85865	broad.mit.edu	37	7	89983814	89983814	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:89983814C>T	uc003ukm.1	+	3	336	c.270C>T	c.(268-270)ATC>ATT	p.I90I	GTPBP10_uc003uki.1_Silent_p.I107I|GTPBP10_uc003ukj.1_Silent_p.I81I|GTPBP10_uc003ukk.1_RNA|GTPBP10_uc003ukl.1_Intron|GTPBP10_uc003ukn.1_Intron|GTPBP10_uc003uko.1_5'UTR	NM_033107	NP_149098	A4D1E9	GTPBA_HUMAN	GTP-binding protein 10 isoform 2	90					ribosome biogenesis	chromosome|nucleolus	GTP binding|GTPase activity|magnesium ion binding				0						ACTGTGAAATCCCTGTGCCTG	0.299													37	92					0	0	1	0	0
GTPBP10	85865	broad.mit.edu	37	7	90007497	90007497	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:90007497C>T	uc003ukm.1	+	8	815	c.749C>T	c.(748-750)GCT>GTT	p.A250V	GTPBP10_uc003ukn.1_Missense_Mutation_p.A171V|GTPBP10_uc003uko.1_Missense_Mutation_p.A60V	NM_033107	NP_149098	A4D1E9	GTPBA_HUMAN	GTP-binding protein 10 isoform 2	250					ribosome biogenesis	chromosome|nucleolus	GTP binding|GTPase activity|magnesium ion binding				0						TACAGGACAGCTTTTGAAACC	0.323													19	34					0	0	1	0	0
CLDN12	9069	broad.mit.edu	37	7	90042413	90042413	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:90042413C>T	uc003ukp.2	+	5	1059	c.423C>T	c.(421-423)TTC>TTT	p.F141F	CLDN12_uc003ukq.2_Silent_p.F141F|CLDN12_uc010leq.2_Silent_p.F141F|CLDN12_uc003ukr.2_Silent_p.F141F|CLDN12_uc003uks.2_Silent_p.F141F	NM_012129	NP_036261	P56749	CLD12_HUMAN	claudin 12	141	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGCTATTTTTCCTGGCAGGTA	0.493													50	114					0	0	1	0	0
CDK14	5218	broad.mit.edu	37	7	90355918	90355918	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:90355918G>A	uc003uky.2	+	3	383	c.161G>A	c.(160-162)GGA>GAA	p.G54E	CDK14_uc003ukt.1_Missense_Mutation_p.G8E|CDK14_uc003ukv.1_Missense_Mutation_p.G8E|CDK14_uc003uku.1_Missense_Mutation_p.G8E|CDK14_uc003ukx.1_Intron|CDK14_uc003ukz.1_Missense_Mutation_p.G36E|CDK14_uc010les.1_Missense_Mutation_p.G8E|CDK14_uc011khl.1_5'UTR	NM_012395	NP_036527	O94921	CDK14_HUMAN	PFTAIRE protein kinase 1	54					cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			lung(3)|ovary(1)	4						AACTGCCAGGGAATGGACTCA	0.408													8	79					0	0	1	0	0
FZD1	8321	broad.mit.edu	37	7	90895665	90895665	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:90895665C>T	uc003ula.2	+	1	1883	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F		NM_003505	NP_003496	Q9UP38	FZD1_HUMAN	frizzled 1 precursor	490	Helical; Name=5; (Potential).				autocrine signaling|axonogenesis|brain development|canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|embryo development|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|lung alveolus development|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to drug|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cell surface|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|receptor binding|Wnt receptor activity|Wnt-protein binding				0	all_cancers(62;3.1e-10)|all_epithelial(64;1.66e-08)|Breast(17;0.000635)|Lung NSC(181;0.153)|all_lung(186;0.154)|all_hematologic(106;0.215)		STAD - Stomach adenocarcinoma(171;0.0134)			TGCGTGGCTTCGTGCTGGCGC	0.612													75	188					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91709262	91709262	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:91709262C>T	uc003ulg.2	+	31	8040	c.7815C>T	c.(7813-7815)ACC>ACT	p.T2605T	AKAP9_uc003ulf.2_Silent_p.T2597T|AKAP9_uc003uli.2_Silent_p.T2228T|AKAP9_uc003ulj.2_Silent_p.T375T	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2617	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CAGCATTAACCTTGAGAATAT	0.289			T	BRAF	papillary thyroid								43	80					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91726016	91726016	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:91726016C>T	uc003ulg.2	+	41	9968	c.9743C>T	c.(9742-9744)TCA>TTA	p.S3248L	AKAP9_uc003ulf.2_Missense_Mutation_p.S3240L|AKAP9_uc003uli.2_Missense_Mutation_p.S2871L|AKAP9_uc003ulj.2_Missense_Mutation_p.S1018L|AKAP9_uc003ull.2_Missense_Mutation_p.S144L	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	3252	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CTGAAGTTTTCACTTGAGAGT	0.259			T	BRAF	papillary thyroid								52	24					0	0	1	0	0
CYP51A1	1595	broad.mit.edu	37	7	91753076	91753076	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:91753076G>A	uc003ulm.3	-	6	1024	c.862C>T	c.(862-864)CTC>TTC	p.L288F	CYP51A1_uc011khn.1_Missense_Mutation_p.L183F|CYP51A1_uc003uln.3_Missense_Mutation_p.L225F	NM_000786	NP_000777	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A,	282					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity				0	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	AAAGTTTGGAGAATGTCATCA	0.343													9	73					0	0	1	0	0
ANKIB1	54467	broad.mit.edu	37	7	92027138	92027138	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92027138C>T	uc003ulw.2	+	19	2873	c.2497C>T	c.(2497-2499)CCT>TCT	p.P833S	ANKIB1_uc010lew.1_Missense_Mutation_p.P102S	NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	833							protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TGACTACACCCCTGCCAGTCG	0.542													67	186					0	0	1	0	0
ANKIB1	54467	broad.mit.edu	37	7	92027859	92027859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92027859C>T	uc003ulw.2	+	20	3242	c.2866C>T	c.(2866-2868)CCT>TCT	p.P956S	ANKIB1_uc010lew.1_Missense_Mutation_p.P225S	NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	956							protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			ATCTAGTGATCCTGACTCAGC	0.493													46	97					0	0	1	0	0
C7orf64	84060	broad.mit.edu	37	7	92164170	92164170	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92164170C>T	uc003ulz.2	+	4	944	c.903C>T	c.(901-903)AAC>AAT	p.N301N	C7orf64_uc003uma.2_Silent_p.N301N	NM_032120	NP_115496	Q5RL73	CG064_HUMAN	hypothetical protein LOC84060	301							nucleotide binding			ovary(2)	2						TTCAAACAAACCCAACTGGTA	0.413													18	40					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92730808	92730808	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92730808C>T	uc003umf.2	-	3	4859	c.4603G>A	c.(4603-4605)GAA>AAA	p.E1535K	SAMD9_uc003umg.2_Missense_Mutation_p.E1535K	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1535						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CAATTGTTTTCAGCTCGACCT	0.373													19	45					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92731606	92731606	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92731606C>T	uc003umf.2	-	3	4061	c.3805G>A	c.(3805-3807)GAT>AAT	p.D1269N	SAMD9_uc003umg.2_Missense_Mutation_p.D1269N	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1269						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TCAAAAAAATCAAAGGACTTT	0.313													21	65					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92734303	92734303	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92734303C>A	uc003umf.2	-	3	1364	c.1108G>T	c.(1108-1110)GCA>TCA	p.A370S	SAMD9_uc003umg.2_Missense_Mutation_p.A370S	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	370						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CTGGACTCTGCCAGTGTTTTA	0.338													12	63					2.80697e-09	2.81602e-09	1	1	0
SAMD9	54809	broad.mit.edu	37	7	92734558	92734558	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92734558G>A	uc003umf.2	-	3	1109	c.853C>T	c.(853-855)CGA>TGA	p.R285*	SAMD9_uc003umg.2_Nonsense_Mutation_p.R285*	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	285						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CTTGGCTCTCGAATGCACTTC	0.373													36	92					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92760565	92760565	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92760565C>T	uc003umh.1	-	5	5936	c.4720G>A	c.(4720-4722)GAA>AAA	p.E1574K	SAMD9L_uc003umj.1_Missense_Mutation_p.E1574K|SAMD9L_uc003umi.1_Missense_Mutation_p.E1574K|SAMD9L_uc010lfb.1_Missense_Mutation_p.E1574K|SAMD9L_uc003umk.1_Missense_Mutation_p.E1574K|SAMD9L_uc010lfc.1_Missense_Mutation_p.E1574K|SAMD9L_uc010lfd.1_Missense_Mutation_p.E1574K|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1574										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AGAGGGCCTTCAATGGAAAAT	0.323													21	51					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92760700	92760700	+	Missense_Mutation	SNP	C	T	T	rs147406199		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92760700C>T	uc003umh.1	-	5	5801	c.4585G>A	c.(4585-4587)GCT>ACT	p.A1529T	SAMD9L_uc003umj.1_Missense_Mutation_p.A1529T|SAMD9L_uc003umi.1_Missense_Mutation_p.A1529T|SAMD9L_uc010lfb.1_Missense_Mutation_p.A1529T|SAMD9L_uc003umk.1_Missense_Mutation_p.A1529T|SAMD9L_uc010lfc.1_Missense_Mutation_p.A1529T|SAMD9L_uc010lfd.1_Missense_Mutation_p.A1529T|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1529										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TTGCCTTCAGCCTGACCAGTT	0.398													22	96					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92760756	92760756	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92760756C>T	uc003umh.1	-	5	5745	c.4529G>A	c.(4528-4530)GGG>GAG	p.G1510E	SAMD9L_uc003umj.1_Missense_Mutation_p.G1510E|SAMD9L_uc003umi.1_Missense_Mutation_p.G1510E|SAMD9L_uc010lfb.1_Missense_Mutation_p.G1510E|SAMD9L_uc003umk.1_Missense_Mutation_p.G1510E|SAMD9L_uc010lfc.1_Missense_Mutation_p.G1510E|SAMD9L_uc010lfd.1_Missense_Mutation_p.G1510E|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1510										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CCACACATCCCCACTGTGCCA	0.418													41	85					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761127	92761127	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92761127G>A	uc003umh.1	-	5	5374	c.4158C>T	c.(4156-4158)GCC>GCT	p.A1386A	SAMD9L_uc003umj.1_Silent_p.A1386A|SAMD9L_uc003umi.1_Silent_p.A1386A|SAMD9L_uc010lfb.1_Silent_p.A1386A|SAMD9L_uc003umk.1_Silent_p.A1386A|SAMD9L_uc010lfc.1_Silent_p.A1386A|SAMD9L_uc010lfd.1_Silent_p.A1386A|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1386										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GAATAATGTTGGCCAAAATGG	0.383													17	250					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761935	92761935	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92761935G>A	uc003umh.1	-	5	4566	c.3350C>T	c.(3349-3351)TCC>TTC	p.S1117F	SAMD9L_uc003umj.1_Missense_Mutation_p.S1117F|SAMD9L_uc003umi.1_Missense_Mutation_p.S1117F|SAMD9L_uc010lfb.1_Missense_Mutation_p.S1117F|SAMD9L_uc003umk.1_Missense_Mutation_p.S1117F|SAMD9L_uc010lfc.1_Missense_Mutation_p.S1117F|SAMD9L_uc010lfd.1_Missense_Mutation_p.S1117F|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1117										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TGAAATATAGGAATTTTTAGG	0.383													38	131					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92762058	92762058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92762058C>T	uc003umh.1	-	5	4443	c.3227G>A	c.(3226-3228)AGA>AAA	p.R1076K	SAMD9L_uc003umj.1_Missense_Mutation_p.R1076K|SAMD9L_uc003umi.1_Missense_Mutation_p.R1076K|SAMD9L_uc010lfb.1_Missense_Mutation_p.R1076K|SAMD9L_uc003umk.1_Missense_Mutation_p.R1076K|SAMD9L_uc010lfc.1_Missense_Mutation_p.R1076K|SAMD9L_uc010lfd.1_Missense_Mutation_p.R1076K|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1076										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TGGGAATCGTCTACTTCCTGC	0.428													56	132					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763148	92763148	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92763148C>T	uc003umh.1	-	5	3353	c.2137G>A	c.(2137-2139)GAC>AAC	p.D713N	SAMD9L_uc003umj.1_Missense_Mutation_p.D713N|SAMD9L_uc003umi.1_Missense_Mutation_p.D713N|SAMD9L_uc010lfb.1_Missense_Mutation_p.D713N|SAMD9L_uc003umk.1_Missense_Mutation_p.D713N|SAMD9L_uc010lfc.1_Missense_Mutation_p.D713N|SAMD9L_uc010lfd.1_Missense_Mutation_p.D713N|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	713										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TCATAACTGTCCCTTTTAACA	0.343													43	72					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764208	92764208	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92764208C>T	uc003umh.1	-	5	2293	c.1077G>A	c.(1075-1077)CGG>CGA	p.R359R	SAMD9L_uc003umj.1_Silent_p.R359R|SAMD9L_uc003umi.1_Silent_p.R359R|SAMD9L_uc010lfb.1_Silent_p.R359R|SAMD9L_uc003umk.1_Silent_p.R359R|SAMD9L_uc010lfc.1_Silent_p.R359R|SAMD9L_uc010lfd.1_Silent_p.R359R|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	359										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AATCTACATCCCGTTGCTTGG	0.368													33	211					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764252	92764252	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92764252C>T	uc003umh.1	-	5	2249	c.1033G>A	c.(1033-1035)GAA>AAA	p.E345K	SAMD9L_uc003umj.1_Missense_Mutation_p.E345K|SAMD9L_uc003umi.1_Missense_Mutation_p.E345K|SAMD9L_uc010lfb.1_Missense_Mutation_p.E345K|SAMD9L_uc003umk.1_Missense_Mutation_p.E345K|SAMD9L_uc010lfc.1_Missense_Mutation_p.E345K|SAMD9L_uc010lfd.1_Missense_Mutation_p.E345K|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	345										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CTAGCCCCTTCTCTTACAAAC	0.333													56	119					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764593	92764593	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92764593G>A	uc003umh.1	-	5	1908	c.692C>T	c.(691-693)TCA>TTA	p.S231L	SAMD9L_uc003umj.1_Missense_Mutation_p.S231L|SAMD9L_uc003umi.1_Missense_Mutation_p.S231L|SAMD9L_uc010lfb.1_Missense_Mutation_p.S231L|SAMD9L_uc003umk.1_Missense_Mutation_p.S231L|SAMD9L_uc010lfc.1_Missense_Mutation_p.S231L|SAMD9L_uc010lfd.1_Missense_Mutation_p.S231L|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	231										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			ATTGGTGCGTGAATTCATACA	0.438													42	96					0	0	1	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92826581	92826581	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92826581C>T	uc003umm.2	-	7	1197	c.1174G>A	c.(1174-1176)GAA>AAA	p.E392K	HEPACAM2_uc003uml.2_Missense_Mutation_p.E380K|HEPACAM2_uc010lff.2_Silent_p.Q371Q|HEPACAM2_uc011khy.1_Missense_Mutation_p.E415K	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	392	Cytoplasmic (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						TTCCTGTATTCTGTTTCTGGC	0.303													22	52					0	0	1	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92826798	92826798	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92826798C>T	uc003umm.2	-	5	1161	c.1138G>A	c.(1138-1140)GTT>ATT	p.V380I	HEPACAM2_uc003uml.2_Missense_Mutation_p.V368I|HEPACAM2_uc010lff.2_Missense_Mutation_p.G368S|HEPACAM2_uc011khy.1_Missense_Mutation_p.V403I	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	380	Cytoplasmic (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						TTTAACCTACCTTTGTAGGGT	0.269													9	54					0	0	1	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92844872	92844872	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92844872C>T	uc003umm.2	-	3	580	c.557G>A	c.(556-558)GGG>GAG	p.G186E	HEPACAM2_uc003uml.2_Missense_Mutation_p.G174E|HEPACAM2_uc010lff.2_Missense_Mutation_p.G174E|HEPACAM2_uc011khy.1_Missense_Mutation_p.G209E	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	186	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						GACAGGTCTCCCATTTTTTAG	0.507													22	81					0	0	1	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92848455	92848455	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:92848455C>T	uc003umm.2	-	2	412	c.389G>A	c.(388-390)GGA>GAA	p.G130E	HEPACAM2_uc003uml.2_Missense_Mutation_p.G118E|HEPACAM2_uc010lff.2_Missense_Mutation_p.G118E|HEPACAM2_uc011khy.1_Missense_Mutation_p.G153E	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	130	Extracellular (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						AGATAGAGTTCCATTTCCCTG	0.413													17	50					0	0	1	0	0
CALCR	799	broad.mit.edu	37	7	93065419	93065419	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:93065419C>T	uc003umv.1	-	13	1357	c.1096G>A	c.(1096-1098)GAG>AAG	p.E366K	CALCR_uc011kia.1_Missense_Mutation_p.E146K|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.E332K|CALCR_uc003umw.2_Missense_Mutation_p.E332K	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	348	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	GATTCCGCCTCATGGGTTTCC	0.478													21	56					0	0	1	0	0
CALCR	799	broad.mit.edu	37	7	93090139	93090139	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:93090139C>T	uc003umv.1	-	9	1005	c.744G>A	c.(742-744)AGG>AGA	p.R248R	CALCR_uc011kia.1_Silent_p.R28R|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.R214R|CALCR_uc003umw.2_Silent_p.R214R	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	230	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	TTACCGGGTCCCTTCGCACGA	0.383													23	115					0	0	1	0	0
CALCR	799	broad.mit.edu	37	7	93098047	93098047	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:93098047C>T	uc003umv.1	-	7	816	c.555G>A	c.(553-555)CTG>CTA	p.L185L	CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.L167L|CALCR_uc003umw.2_Silent_p.L167L	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	167	Helical; Name=1; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	CGAAAATCCCCAGGGAAATCA	0.383													13	63					0	0	1	0	0
CALCR	799	broad.mit.edu	37	7	93098092	93098092	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:93098092A>G	uc003umv.1	-	7	771	c.510T>C	c.(508-510)GCT>GCC	p.A170A	CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.A152A|CALCR_uc003umw.2_Silent_p.A152A	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	152	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	GACCCACAATAGCCAAATAGT	0.343													15	54					0	0	1	0	0
CALCR	799	broad.mit.edu	37	7	93106913	93106913	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:93106913G>A	uc003umv.1	-	5	588	c.327C>T	c.(325-327)TCC>TCT	p.S109S	CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.S91S|CALCR_uc003umw.2_Silent_p.S91S	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	91	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	AGAACTGATAGGACAATACTC	0.423													15	45					0	0	1	0	0
TFPI2	7980	broad.mit.edu	37	7	93516176	93516176	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:93516176G>A	uc003umy.1	-	5	739	c.664C>T	c.(664-666)CGC>TGC	p.R222C	GNGT1_uc003umx.1_Intron|TFPI2_uc003umz.1_3'UTR|TFPI2_uc003una.1_Missense_Mutation_p.R211C|TFPI2_uc003unb.1_Missense_Mutation_p.R228C|TFPI2_uc010lfg.1_Missense_Mutation_p.R98C	NM_006528	NP_006519	P48307	TFPI2_HUMAN	tissue factor pathway inhibitor 2 precursor	222					blood coagulation	proteinaceous extracellular matrix	extracellular matrix structural constituent|serine-type endopeptidase inhibitor activity			pancreas(1)	1	all_cancers(62;4.45e-10)|all_epithelial(64;2.92e-09)|Lung NSC(181;0.218)		STAD - Stomach adenocarcinoma(171;0.000967)			CTGGCAAAGCGAAGCTTTGGC	0.328													48	121					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94028396	94028396	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94028396G>A	uc003ung.1	+	4	603	c.132G>A	c.(130-132)AGG>AGA	p.R44R	COL1A2_uc011kib.1_Silent_p.R44R	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	44					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GTGGAGAAAGGGTGTGTAATT	0.373										HNSCC(75;0.22)			40	100					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94048819	94048819	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94048819G>A	uc003ung.1	+	34	2506	c.2035G>A	c.(2035-2037)GGT>AGT	p.G679S	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	679			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GGGTGCTCCTGGTGCTGTAGG	0.453										HNSCC(75;0.22)			23	56					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94049587	94049587	+	Missense_Mutation	SNP	C	T	T	rs139199272		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94049587C>T	uc003ung.1	+	35	2593	c.2122C>T	c.(2122-2124)CGG>TGG	p.R708W	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	708			R -> Q (in Marfan syndrome).|Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	tgctggtcctCGGGGAAGCCC	0.353										HNSCC(75;0.22)			27	91					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94049590	94049590	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94049590G>A	uc003ung.1	+	35	2596	c.2125G>A	c.(2125-2127)GGA>AGA	p.G709R	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	709			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	tggtcctCGGGGAAGCCCTGT	0.358										HNSCC(75;0.22)			12	99					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94052354	94052354	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94052354G>A	uc003ung.1	+	40	2960	c.2489G>A	c.(2488-2490)CGA>CAA	p.R830Q	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	830			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CCAGTTGGCCGAACTGGAGAA	0.562										HNSCC(75;0.22)			40	92					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94053657	94053657	+	Missense_Mutation	SNP	G	A	A	rs72658200		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94053657G>A	uc003ung.1	+	41	3046	c.2575G>A	c.(2575-2577)GGC>AGC	p.G859S	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_RNA	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	859					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GGGACCTCCTGGCACTCCAGG	0.493										HNSCC(75;0.22)			23	71					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94055164	94055164	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94055164G>A	uc003ung.1	+	44	3409	c.2938G>A	c.(2938-2940)GAA>AAA	p.E980K	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	980				E -> V (in Ref. 21; AAA51996).	axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	AAACCGTGGTGAAACTGTAAG	0.577										HNSCC(75;0.22)			3	13					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94056584	94056584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94056584C>T	uc003ung.1	+	48	3715	c.3244C>T	c.(3244-3246)CCT>TCT	p.P1082S	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1082					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CATTCGAGGCCCTCAGGGTCA	0.502										HNSCC(75;0.22)			7	11					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94056942	94056942	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94056942C>T	uc003ung.1	+	49	3742	c.3271C>T	c.(3271-3273)CCC>TCC	p.P1091S	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1091					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TTTGCAGGGCCCCCCTGGTCC	0.532										HNSCC(75;0.22)			42	109					0	0	1	0	0
CASD1	64921	broad.mit.edu	37	7	94146881	94146881	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94146881C>T	uc003uni.3	+	2	370	c.143C>T	c.(142-144)TCG>TTG	p.S48L	CASD1_uc003unh.2_Missense_Mutation_p.S48L|CASD1_uc003unj.3_Missense_Mutation_p.S48L	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	48						integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			GGCAATGATTCGTGTGAATAC	0.338													20	73					0	0	1	0	0
CASD1	64921	broad.mit.edu	37	7	94164787	94164787	+	Silent	SNP	C	T	T	rs146953436	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94164787C>T	uc003uni.3	+	8	1022	c.795C>T	c.(793-795)ATC>ATT	p.I265I	CASD1_uc003unh.2_Intron|CASD1_uc003unj.3_Silent_p.I265I	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	265						integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			AAGAAACCATCATGGAATCTT	0.338													30	89					0	0	1	0	0
CASD1	64921	broad.mit.edu	37	7	94185045	94185045	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94185045C>T	uc003uni.3	+	18	2596	c.2369C>T	c.(2368-2370)TCC>TTC	p.S790F	CASD1_uc003unj.3_Missense_Mutation_p.S790F	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	790	Helical; (Potential).					integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			ATCTTATCATCCATTCAAGAT	0.338													34	81					0	0	1	0	0
PEG10	23089	broad.mit.edu	37	7	94293537	94293537	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94293537C>T	uc011kie.1	+	2	1114	c.897C>T	c.(895-897)GTC>GTT	p.V299V		NM_001040152	NP_001035242	Q86TG7	PEG10_HUMAN	paternally expressed 10 isoform RF1	223	Necessary for interaction with ALK1.				apoptosis|cell differentiation|negative regulation of transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			ACCTCGAGGTCGCCAAGTCGC	0.627													48	55					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94539691	94539691	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94539691G>A	uc003unp.2	+	2	548	c.266G>A	c.(265-267)GGG>GAG	p.G89E	PPP1R9A_uc010lfj.2_Missense_Mutation_p.G89E|PPP1R9A_uc011kif.1_Missense_Mutation_p.G89E|PPP1R9A_uc003unq.2_Missense_Mutation_p.G89E|PPP1R9A_uc011kig.1_Missense_Mutation_p.G89E	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	89	Actin-binding.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AAAACAAGGGGGAAAGGTGGA	0.418										HNSCC(28;0.073)			23	36					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94539793	94539793	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94539793G>A	uc003unp.2	+	2	650	c.368G>A	c.(367-369)CGA>CAA	p.R123Q	PPP1R9A_uc010lfj.2_Missense_Mutation_p.R123Q|PPP1R9A_uc011kif.1_Missense_Mutation_p.R123Q|PPP1R9A_uc003unq.2_Missense_Mutation_p.R123Q|PPP1R9A_uc011kig.1_Missense_Mutation_p.R123Q	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	123	Actin-binding.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GTTTCTGAACGAATTAGTAGA	0.403										HNSCC(28;0.073)			39	109					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94539929	94539929	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94539929G>A	uc003unp.2	+	2	786	c.504G>A	c.(502-504)GGG>GGA	p.G168G	PPP1R9A_uc010lfj.2_Silent_p.G168G|PPP1R9A_uc011kif.1_Silent_p.G168G|PPP1R9A_uc003unq.2_Silent_p.G168G|PPP1R9A_uc011kig.1_Silent_p.G168G	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	168						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AAGCTGGAGGGAGTGAACCTC	0.493										HNSCC(28;0.073)			35	55					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94540021	94540021	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94540021C>T	uc003unp.2	+	2	878	c.596C>T	c.(595-597)TCC>TTC	p.S199F	PPP1R9A_uc010lfj.2_Missense_Mutation_p.S199F|PPP1R9A_uc011kif.1_Missense_Mutation_p.S199F|PPP1R9A_uc003unq.2_Missense_Mutation_p.S199F|PPP1R9A_uc011kig.1_Missense_Mutation_p.S199F	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	199						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GAGGCTGTCTCCCCAACTGTG	0.502										HNSCC(28;0.073)			17	44					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94540532	94540532	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94540532C>T	uc003unp.2	+	2	1389	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	PPP1R9A_uc010lfj.2_Silent_p.F369F|PPP1R9A_uc011kif.1_Silent_p.F369F|PPP1R9A_uc003unq.2_Silent_p.F369F|PPP1R9A_uc011kig.1_Silent_p.F369F	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	369						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GTGGTGATTTCACCTCTCCTG	0.433										HNSCC(28;0.073)			32	56					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94540736	94540736	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94540736G>A	uc003unp.2	+	2	1593	c.1311G>A	c.(1309-1311)ATG>ATA	p.M437I	PPP1R9A_uc010lfj.2_Missense_Mutation_p.M437I|PPP1R9A_uc011kif.1_Missense_Mutation_p.M437I|PPP1R9A_uc003unq.2_Missense_Mutation_p.M437I|PPP1R9A_uc011kig.1_Missense_Mutation_p.M437I	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	437	Interacts with protein phosphatase 1 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AGCCTGATATGGAGTACTCGG	0.418										HNSCC(28;0.073)			16	39					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94740655	94740655	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94740655G>A	uc003unp.2	+	3	1762	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	PPP1R9A_uc010lfj.2_Missense_Mutation_p.E494K|PPP1R9A_uc011kif.1_Missense_Mutation_p.E494K|PPP1R9A_uc003unq.2_Missense_Mutation_p.E494K|PPP1R9A_uc011kig.1_Missense_Mutation_p.E494K	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	494	Interacts with protein phosphatase 1 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GTATGAACTTGAAAAACGTGT	0.403										HNSCC(28;0.073)			18	45					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94898020	94898020	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94898020G>A	uc003unp.2	+	12	3039	c.2757_splice	c.e12+1	p.K919_splice	PPP1R9A_uc010lfj.2_Splice_Site_p.K941_splice|PPP1R9A_uc011kif.1_Splice_Site_p.K919_splice|PPP1R9A_uc003unq.2_Splice_Site_p.K919_splice|PPP1R9A_uc011kig.1_Splice_Site_p.K919_splice|PPP1R9A_uc003unr.2_Splice_Site	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)							cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AGAGAGAAAGGTGAGCACCCT	0.443										HNSCC(28;0.073)			15	50					0	0	1	0	0
PON1	5444	broad.mit.edu	37	7	94931643	94931643	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94931643G>A	uc003uns.2	-	8	880	c.783C>T	c.(781-783)TCC>TCT	p.S261S	PON1_uc011kih.1_Silent_p.S261S	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	261					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	TAAAGTCAAGGGACTTAAAAG	0.378													6	54					0	0	1	0	0
PON1	5444	broad.mit.edu	37	7	94935616	94935616	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94935616C>T	uc003uns.2	-	7	858	c.761G>A	c.(760-762)TGG>TAG	p.W254*	PON1_uc011kih.1_Nonsense_Mutation_p.W254*	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	254					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	AGTTAAAGTCCAATTAGCATG	0.328													36	170					0	0	1	0	0
PON1	5444	broad.mit.edu	37	7	94944637	94944637	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94944637C>T	uc003uns.2	-	4	464	c.367G>A	c.(367-369)GAA>AAA	p.E123K	PON1_uc011kih.1_Missense_Mutation_p.E123K	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	123					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	TTGTTACCTTCATCTGTGAAT	0.303													10	33					0	0	1	0	0
PON1	5444	broad.mit.edu	37	7	94944769	94944769	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94944769G>A	uc003uns.2	-	4	332	c.235C>T	c.(235-237)CCC>TCC	p.P79S	PON1_uc011kih.1_Missense_Mutation_p.P79S	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	79					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	GGACTGTTGGGGTTGAAGCTC	0.393													16	71					0	0	1	0	0
PON1	5444	broad.mit.edu	37	7	94946066	94946066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94946066C>T	uc003uns.2	-	3	278	c.181G>A	c.(181-183)GGA>AGA	p.G61R	PON1_uc011kih.1_Missense_Mutation_p.G61R	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	61					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	AAAGCCAGTCCATTAGGCAGT	0.403													35	148					0	0	1	0	0
PON3	5446	broad.mit.edu	37	7	94993217	94993217	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94993217C>T	uc003unt.2	-	6	678	c.653G>A	c.(652-654)GGA>GAA	p.G218E	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Missense_Mutation_p.G266E	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	218					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			ACTACAAAATCCTTTGGCCAC	0.428													81	184					0	0	1	0	0
PON3	5446	broad.mit.edu	37	7	94993239	94993239	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:94993239C>T	uc003unt.2	-	6	656	c.631G>A	c.(631-633)GAG>AAG	p.E211K	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Missense_Mutation_p.E259K	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	211					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			ACTTTAACCTCCCTTGGGCTG	0.438													79	196					0	0	1	0	0
PON3	5446	broad.mit.edu	37	7	95001514	95001514	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:95001514G>A	uc003unt.2	-	4	363	c.338C>T	c.(337-339)CCA>CTA	p.P113L	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Missense_Mutation_p.P161L	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	113					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			GATCCCATGTGGATTAAATAA	0.393													35	93					0	0	1	0	0
PON3	5446	broad.mit.edu	37	7	95001578	95001578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:95001578C>T	uc003unt.2	-	4	299	c.274G>A	c.(274-276)GAA>AAA	p.E92K	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Missense_Mutation_p.E140K	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	92					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			GGGTTTTGTTCATTCAGATCC	0.378													24	83					0	0	1	0	0
PON3	5446	broad.mit.edu	37	7	95019472	95019472	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:95019472G>A	uc003unt.2	-	3	220	c.195C>T	c.(193-195)ATC>ATT	p.I65I	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Silent_p.I65I	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	65					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			TCACACTGGAGATAAAAGCCA	0.403													99	287					0	0	1	0	0
PON2	5445	broad.mit.edu	37	7	95035513	95035513	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:95035513G>A	uc003unv.2	-	8	945	c.824C>T	c.(823-825)TCC>TTC	p.S275F	PON2_uc003unu.2_Missense_Mutation_p.S263F|PON2_uc010lfk.2_RNA|PON2_uc003unw.2_Missense_Mutation_p.S188F	NM_000305	NP_000296	Q15165	PON2_HUMAN	paraoxonase 2 isoform 1	275					aromatic compound catabolic process	extracellular region|plasma membrane	arylesterase activity|identical protein binding|metal ion binding				0	all_cancers(62;9.35e-11)|all_epithelial(64;3.37e-09)		STAD - Stomach adenocarcinoma(171;0.0151)			GTCCCCCGAGGAAGGATCAAT	0.403													48	138					0	0	1	0	0
PDK4	5166	broad.mit.edu	37	7	95221348	95221348	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:95221348C>T	uc003uoa.2	-	6	966	c.646G>A	c.(646-648)GAT>AAT	p.D216N	PDK4_uc003unz.2_Missense_Mutation_p.D4N	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	216	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			TAATACTGATCACAGAGCATC	0.313													59	134					0	0	1	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95606832	95606832	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:95606832G>A	uc003uoc.3	+	7	827	c.550G>A	c.(550-552)GAA>AAA	p.E184K	DYNC1I1_uc003uod.3_Missense_Mutation_p.E167K|DYNC1I1_uc003uob.2_Missense_Mutation_p.E147K|DYNC1I1_uc003uoe.3_Missense_Mutation_p.E164K|DYNC1I1_uc010lfl.2_Missense_Mutation_p.E173K	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	184					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			AGAGGATGAGGAAGATGAGGA	0.368													19	25					0	0	1	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95606880	95606880	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:95606880G>A	uc003uoc.3	+	7	875	c.598G>A	c.(598-600)GAA>AAA	p.E200K	DYNC1I1_uc003uod.3_Missense_Mutation_p.E183K|DYNC1I1_uc003uob.2_Missense_Mutation_p.E163K|DYNC1I1_uc003uoe.3_Missense_Mutation_p.E180K|DYNC1I1_uc010lfl.2_Missense_Mutation_p.E189K	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	200					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			CTCAGAACTGGAAAATCAGGA	0.323													5	41					0	0	1	0	0
OCM2	4951	broad.mit.edu	37	7	97617821	97617821	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:97617821G>A	uc003upc.2	-	2	101	c.101C>T	c.(100-102)TCA>TTA	p.S34L		NM_006188	NP_006179	P0CE71	OCM2_HUMAN	oncomodulin-like	34							calcium ion binding				0						GGAGAGGCCTGACGTCTGGAA	0.463													90	205					0	0	1	0	0
TMEM130	222865	broad.mit.edu	37	7	98449122	98449122	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:98449122C>T	uc003upo.2	-	6	1117	c.928G>A	c.(928-930)GAC>AAC	p.D310N	TMEM130_uc011kiq.1_Missense_Mutation_p.D291N|TMEM130_uc011kir.1_Missense_Mutation_p.D310N|TMEM130_uc003upn.2_Missense_Mutation_p.D208N	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	310	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			AAGCAGTAGTCCCCAGGGTCC	0.592													24	42					0	0	1	0	0
TMEM130	222865	broad.mit.edu	37	7	98460836	98460836	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:98460836G>A	uc003upo.2	-	2	462	c.273C>T	c.(271-273)TCC>TCT	p.S91S	TMEM130_uc011kiq.1_Silent_p.S72S|TMEM130_uc011kir.1_Silent_p.S91S|TMEM130_uc003upn.2_Intron	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	91	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CACGGATGGTGGAGCTGAGAC	0.657													8	63					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98507826	98507826	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:98507826C>T	uc003upp.2	+	15	1707	c.1498C>T	c.(1498-1500)CCA>TCA	p.P500S	TRRAP_uc011kis.1_Missense_Mutation_p.P500S|TRRAP_uc003upr.2_Missense_Mutation_p.P192S	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	500	Pro-rich.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TGCTCCCTCCCCAGCCCCTGT	0.498													23	61					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98528268	98528268	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:98528268C>T	uc003upp.2	+	25	3615	c.3406C>T	c.(3406-3408)CCC>TCC	p.P1136S	TRRAP_uc011kis.1_Missense_Mutation_p.P1136S|TRRAP_uc003upr.2_Missense_Mutation_p.P828S	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1136					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CTGCCAGCTGCCCCTGTTTTC	0.378													97	210					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98545880	98545880	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:98545880C>T	uc003upp.2	+	33	4773	c.4564C>T	c.(4564-4566)CAT>TAT	p.H1522Y	TRRAP_uc011kis.1_Missense_Mutation_p.H1504Y|TRRAP_uc003upr.2_Missense_Mutation_p.H1221Y	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1522					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			AAACCTTTTTCATCTGATCCC	0.438													38	74					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98547864	98547864	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:98547864C>T	uc003upp.2	+	37	5501	c.5292C>T	c.(5290-5292)TTC>TTT	p.F1764F	TRRAP_uc011kis.1_Silent_p.F1746F|TRRAP_uc003upr.2_Silent_p.F1463F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1764					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACCCCAACTTCGGAGATGAAT	0.418													42	85					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98555693	98555693	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:98555693C>T	uc003upp.2	+	43	6509	c.6300C>T	c.(6298-6300)TTC>TTT	p.F2100F	TRRAP_uc011kis.1_Silent_p.F2082F|TRRAP_uc003upr.2_Silent_p.F1799F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2100	Interaction with TP53.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TGGTGAACTTCCTTATCCGCG	0.567													12	33					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98592348	98592348	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:98592348C>T	uc003upp.2	+	66	10353	c.10144C>T	c.(10144-10146)CTG>TTG	p.L3382L	TRRAP_uc011kis.1_Silent_p.L3353L|TRRAP_uc003upr.2_Silent_p.L3088L	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3382					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TGGGGTGGGCCTGGAGAATGT	0.567													86	192					0	0	1	0	0
PTCD1	26024	broad.mit.edu	37	7	99021527	99021527	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99021527G>A	uc003uqh.2	-	7	1922	c.1791C>T	c.(1789-1791)GCC>GCT	p.A597A	PTCD1_uc011kiw.1_Silent_p.A646A	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	597	PPR 9.									ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			GCTTCCTGATGGCCGCGTTGA	0.527													6	80					0	0	1	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99124001	99124001	+	Silent	SNP	C	T	T	rs148650223		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99124001C>T	uc003uqv.2	+	6	1462	c.1338C>T	c.(1336-1338)ATC>ATT	p.I446I	ZKSCAN5_uc010lfx.2_Silent_p.I446I|ZKSCAN5_uc003uqw.2_Silent_p.I446I|ZKSCAN5_uc003uqx.2_Silent_p.I373I|ZKSCAN5_uc003uqy.2_Silent_p.I182I	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	446	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					CGCATCTGATCGAACACCTAA	0.507													91	232					0	0	1	0	0
ZNF655	79027	broad.mit.edu	37	7	99171107	99171107	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99171107C>T	uc003urh.2	+	3	1769	c.1376C>T	c.(1375-1377)ACC>ATC	p.T459I	ZNF655_uc010lga.2_Missense_Mutation_p.T494I|ZNF655_uc010lgc.2_Missense_Mutation_p.T494I|ZNF655_uc003urj.2_Missense_Mutation_p.T459I|ZNF655_uc003urk.2_Missense_Mutation_p.T296I|ZNF655_uc010lgd.2_Missense_Mutation_p.T296I	NM_138494	NP_612503	Q8N720	ZN655_HUMAN	zinc finger protein 655 isoform a	459					G1 phase|regulation of mitotic cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_epithelial(64;3.19e-09)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					GAAGTCCTCACCAGACAGAAA	0.403													63	168					0	0	1	0	0
CYP3A7	1551	broad.mit.edu	37	7	99305460	99305460	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99305460G>A	uc003uru.2	-	12	1496	c.1391C>T	c.(1390-1392)TCC>TTC	p.S464F	ZNF498_uc003urn.2_RNA|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	464					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					AGGTTTGAAGGAGAAGTTCTG	0.348													14	172					0	0	1	0	0
CYP3A7	1551	broad.mit.edu	37	7	99308381	99308381	+	Missense_Mutation	SNP	C	T	T	rs147031398		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99308381C>T	uc003uru.2	-	10	1105	c.1000G>A	c.(1000-1002)GAA>AAA	p.E334K	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	334					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					GTATCAATTTCCTTCTGCACT	0.453													22	69					0	0	1	0	0
CYP3A7	1551	broad.mit.edu	37	7	99315203	99315203	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99315203C>T	uc003uru.2	-	5	483	c.378G>A	c.(376-378)TGG>TGA	p.W126*	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	126					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					GTATTCTCTTCCATTCTTCAT	0.383													6	63					0	0	1	0	0
CYP3A7	1551	broad.mit.edu	37	7	99319926	99319926	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99319926C>T	uc003uru.2	-	3	316	c.211G>A	c.(211-213)GTC>ATC	p.V71I	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	71					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					CACCCCCAGACTTTTCTATAC	0.393													8	87					0	0	1	0	0
CYP3A4	1576	broad.mit.edu	37	7	99358502	99358502	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99358502C>T	uc003urv.1	-	12	1460	c.1356G>A	c.(1354-1356)ATG>ATA	p.M452I	CYP3A4_uc003urw.1_Missense_Mutation_p.M451I|CYP3A4_uc011kiz.1_Missense_Mutation_p.M411I|CYP3A4_uc011kja.1_Missense_Mutation_p.M403I|CYP3A4_uc011kjb.1_Missense_Mutation_p.M302I	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	452					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	GAGCAAGTTTCATGTTCATGA	0.363													65	147					0	0	1	0	0
CYP3A4	1576	broad.mit.edu	37	7	99367785	99367785	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99367785G>A	uc003urv.1	-	5	496	c.392C>T	c.(391-393)TCA>TTA	p.S131L	CYP3A4_uc003urw.1_Missense_Mutation_p.S131L|CYP3A4_uc011kiz.1_Intron|CYP3A4_uc011kja.1_Missense_Mutation_p.S82L|CYP3A4_uc011kjb.1_Intron	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	131					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	AGACAGCAATGATCGTAATCT	0.388													37	101					0	0	1	0	0
CYP3A43	64816	broad.mit.edu	37	7	99459391	99459391	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99459391G>A	uc003urx.1	+	11	1285	c.1182G>A	c.(1180-1182)GTG>GTA	p.V394V	CYP3A43_uc003ury.1_Silent_p.V394V|CYP3A43_uc003urz.1_Silent_p.V394V|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Silent_p.V284V|CYP3A43_uc003usb.1_Silent_p.V254V	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	394			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	GGTTAGCAGTGATGGTTCCAA	0.458													40	82					0	0	1	0	0
OR2AE1	81392	broad.mit.edu	37	7	99473921	99473921	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99473921C>T	uc003usc.1	-	1	736	c.736G>A	c.(736-738)GTG>ATG	p.V246M		NM_001005276	NP_001005276	Q8NHA4	O2AE1_HUMAN	olfactory receptor, family 2, subfamily AE,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					AGAGAAACCACCGTGAGGTGG	0.478													38	85					0	0	1	0	0
TRIM4	89122	broad.mit.edu	37	7	99489896	99489896	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99489896C>T	uc003usd.2	-	7	1523	c.1393G>A	c.(1393-1395)GGA>AGA	p.G465R	TRIM4_uc003use.2_Missense_Mutation_p.G439R|TRIM4_uc011kjc.1_Missense_Mutation_p.G295R	NM_033017	NP_148977	Q9C037	TRIM4_HUMAN	tripartite motif protein TRIM4 isoform alpha	465	B30.2/SPRY.				protein trimerization	cytoplasm|plasma membrane	zinc ion binding			ovary(1)|kidney(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)	Ovarian(593;0.238)				AGGTGCACTCCGTCCACAGCG	0.537													60	126					0	0	1	0	0
TRIM4	89122	broad.mit.edu	37	7	99506319	99506319	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99506319C>T	uc003usd.2	-	4	814	c.684G>A	c.(682-684)ACG>ACA	p.T228T	TRIM4_uc003use.2_Silent_p.T202T|TRIM4_uc011kjc.1_Silent_p.T58T|TRIM4_uc003usf.2_Silent_p.T202T	NM_033017	NP_148977	Q9C037	TRIM4_HUMAN	tripartite motif protein TRIM4 isoform alpha	228	Potential.				protein trimerization	cytoplasm|plasma membrane	zinc ion binding			ovary(1)|kidney(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)	Ovarian(593;0.238)				GCTTCTTCTTCGTCTCTTCTT	0.448													37	115					0	0	1	0	0
GJC3	349149	broad.mit.edu	37	7	99526588	99526588	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99526588C>T	uc011kjd.1	-	1	656	c.656G>A	c.(655-657)TGG>TAG	p.W219*		NM_181538	NP_853516	Q8NFK1	CXG3_HUMAN	gap junction protein, gamma 3, 30.2kDa	219	Cytoplasmic (Potential).					connexon complex|integral to membrane				ovary(1)	1	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					CCAGGTCCTCCACCATCTCCC	0.458													24	53					0	0	1	0	0
AZGP1	563	broad.mit.edu	37	7	99564686	99564686	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99564686G>A	uc003ush.2	-	4	881	c.837C>T	c.(835-837)TCC>TCT	p.S279S		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	279	Ig-like C1-type.				antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					GCACGTGGCAGGAGTAGGGGG	0.622													35	106					0	0	1	0	0
AZGP1	563	broad.mit.edu	37	7	99566032	99566032	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99566032C>T	uc003ush.2	-	3	403	c.359G>A	c.(358-360)AGG>AAG	p.R120K		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	120					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					ACAACCAAACCTTCCCTGCAA	0.433													40	410					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	99580912	99580912	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99580912G>A	uc003usi.2	+	2	233	c.222G>A	c.(220-222)TGG>TGA	p.W74*						RecName: Full=Putative zinc-alpha-2-glycoprotein-like 2; Flags: Precursor;																		TGGGACCATGGAGACATGCGG	0.542													15	24					0	0	1	0	0
ZKSCAN1	7586	broad.mit.edu	37	7	99631479	99631479	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99631479C>T	uc003usk.1	+	6	1570	c.1351C>T	c.(1351-1353)CAT>TAT	p.H451Y	ZKSCAN1_uc003usl.1_Missense_Mutation_p.H415Y|ZKSCAN1_uc003usm.1_Missense_Mutation_p.H238Y	NM_003439	NP_003430	P17029	ZKSC1_HUMAN	zinc finger protein 36	451	C2H2-type 3.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			TCTCATCCTCCATCAGCGCAT	0.512													81	202					0	0	1	0	0
ZSCAN21	7589	broad.mit.edu	37	7	99655367	99655367	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99655367C>T	uc003uso.2	+	3	590	c.446C>T	c.(445-447)TCC>TTC	p.S149F	ZSCAN21_uc003usn.1_Missense_Mutation_p.S148F	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	149					positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			GAGAAGATATCCTCCTCAGGA	0.517													28	61					0	0	1	0	0
GAL3ST4	79690	broad.mit.edu	37	7	99758461	99758461	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99758461G>A	uc003utt.2	-	3	1568	c.551C>T	c.(550-552)TCT>TTT	p.S184F	C7orf43_uc003utr.2_5'Flank|C7orf43_uc003uts.2_5'Flank|GAL3ST4_uc003utu.2_Missense_Mutation_p.S184F|GAL3ST4_uc010lgq.2_Missense_Mutation_p.S122F	NM_024637	NP_078913	Q96RP7	G3ST4_HUMAN	galactose-3-O-sulfotransferase 4	184	Lumenal (Potential).				cell-cell signaling|oligosaccharide metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane|membrane fraction	3'-phosphoadenosine 5'-phosphosulfate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(3)	3	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGCAGCCAAAGATGGTGACTT	0.562													27	78					0	0	1	0	0
SPDYE3	441272	broad.mit.edu	37	7	99917221	99917221	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99917221G>A	uc003uug.1	+	4	489	c.249G>A	c.(247-249)GAG>GAA	p.E83E	uc011kjm.1_5'Flank	NM_001004351	NP_001004351	A6NKU9	SPDE3_HUMAN	speedy homolog E3	460											0						AGGACGACGAGGCCCCCAAAC	0.552													48	90					0	0	1	0	0
SPDYE3	441272	broad.mit.edu	37	7	99917408	99917408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99917408G>A	uc003uug.1	+	4	676	c.436G>A	c.(436-438)GTT>ATT	p.V146I	uc011kjm.1_5'Flank	NM_001004351	NP_001004351	A6NKU9	SPDE3_HUMAN	speedy homolog E3	523											0						CAGGGCTTGGGTTTCCCCGGA	0.632													19	75					0	0	1	0	0
PILRB	29990	broad.mit.edu	37	7	99956641	99956641	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99956641C>T	uc003uuk.2	+	16	2889	c.393C>T	c.(391-393)ACC>ACT	p.T131T	PILRB_uc003uul.2_Missense_Mutation_p.P62S|PILRB_uc003uum.1_RNA|PILRB_uc003uun.2_Silent_p.T131T	NM_013440	NP_038468	Q9UKJ0	PILRB_HUMAN	paired immunoglobulin-like type 2 receptor beta	131	Extracellular (Potential).|Ig-like V-type.				activation of transmembrane receptor protein tyrosine kinase activity	integral to plasma membrane	protein binding|receptor activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGCTGGACACCCGGAGATCAG	0.592													39	70					0	0	1	0	0
ZCWPW1	55063	broad.mit.edu	37	7	99999541	99999541	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:99999541C>T	uc003uut.2	-	17	1843	c.1595G>A	c.(1594-1596)GGC>GAC	p.G532D	ZCWPW1_uc011kjq.1_Missense_Mutation_p.G412D|ZCWPW1_uc003uur.2_Intron|ZCWPW1_uc003uus.2_Intron|ZCWPW1_uc011kjr.1_Intron|ZCWPW1_uc011kjp.1_RNA	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	532							zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ATTCCCTTGGCCTTCTTTCCT	0.527													38	93					0	0	1	0	0
C7orf51	222950	broad.mit.edu	37	7	100086302	100086302	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100086302C>T	uc003uvd.1	+	4	1117	c.958C>T	c.(958-960)CCT>TCT	p.P320S	C7orf51_uc003uve.1_Missense_Mutation_p.P102S	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	320	Pro-rich.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CAAGACCACTCCTTGTGAAAT	0.687													48	102					0	0	1	0	0
C7orf51	222950	broad.mit.edu	37	7	100086479	100086479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100086479G>A	uc003uvd.1	+	4	1294	c.1135G>A	c.(1135-1137)GAG>AAG	p.E379K	C7orf51_uc003uve.1_Missense_Mutation_p.E161K	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	379	Pro-rich.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GCCTGCACGGGAGCGGGAGAC	0.701													24	50					0	0	1	0	0
C7orf51	222950	broad.mit.edu	37	7	100086625	100086625	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100086625C>T	uc003uvd.1	+	4	1440	c.1281C>T	c.(1279-1281)TCC>TCT	p.S427S	C7orf51_uc003uve.1_Silent_p.S209S	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	427	Pro-rich.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TCCCCAACTCCCACAGCATGA	0.557													7	7					0	0	1	0	0
C7orf51	222950	broad.mit.edu	37	7	100086942	100086942	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100086942C>T	uc003uvd.1	+	4	1757	c.1598C>T	c.(1597-1599)TCC>TTC	p.S533F	C7orf51_uc003uve.1_Missense_Mutation_p.S315F	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	533										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGCCTGGCCTCCCCCCACAGC	0.697													8	8					0	0	1	0	0
C7orf51	222950	broad.mit.edu	37	7	100087130	100087130	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100087130G>A	uc003uvd.1	+	4	1945	c.1786G>A	c.(1786-1788)GAT>AAT	p.D596N	C7orf51_uc003uve.1_Missense_Mutation_p.D378N	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	596										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GCAAGGGACCGATGGGGGTGC	0.637													31	60					0	0	1	0	0
LRCH4	4034	broad.mit.edu	37	7	100176357	100176357	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100176357G>A	uc003uvj.2	-	5	704	c.651C>T	c.(649-651)TCC>TCT	p.S217S	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	217	LRR 8.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTGGGATTCGGGAGACGCGGT	0.622													7	68					0	0	1	0	0
LRCH4	4034	broad.mit.edu	37	7	100179450	100179450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100179450G>A	uc003uvj.2	-	4	601	c.548C>T	c.(547-549)TCC>TTC	p.S183F	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	183	LRR 7.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GTCCCGCAGGGAAGAGAGGCC	0.562													18	66					0	0	1	0	0
FBXO24	26261	broad.mit.edu	37	7	100189522	100189522	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100189522G>A	uc003uvm.1	+	4	848	c.555G>A	c.(553-555)AAG>AAA	p.K185K	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Silent_p.K171K|FBXO24_uc003uvn.1_5'UTR|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Silent_p.K223K|FBXO24_uc011kka.1_Silent_p.K173K	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	185						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GTGGAGCCAAGGATGTGAGTA	0.408													20	73					0	0	1	0	0
FBXO24	26261	broad.mit.edu	37	7	100190594	100190594	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100190594C>T	uc003uvm.1	+	5	1040	c.747C>T	c.(745-747)ATC>ATT	p.I249I	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Silent_p.I235I|FBXO24_uc003uvn.1_Intron|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Silent_p.I287I|FBXO24_uc011kka.1_Silent_p.I237I	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	249						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					TCAAGCAGATCGTGCTGGTTG	0.493													7	50					0	0	1	0	0
FBXO24	26261	broad.mit.edu	37	7	100197701	100197701	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100197701C>T	uc003uvm.1	+	9	1547	c.1254C>T	c.(1252-1254)CAC>CAT	p.H418H	FBXO24_uc003uvn.1_Intron|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Silent_p.H456H|FBXO24_uc011kka.1_Silent_p.H406H|PCOLCE_uc011kkb.1_5'Flank|PCOLCE_uc003uvo.2_5'Flank|PCOLCE_uc010lhb.1_5'Flank	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	418	RCC1.					ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GCCTCAACCACTCCCTGGTGC	0.692													3	13					0	0	1	0	0
MOSPD3	64598	broad.mit.edu	37	7	100210593	100210593	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100210593C>T	uc003uvq.2	+	2	381	c.179C>T	c.(178-180)CCC>CTC	p.P60L	MOSPD3_uc003uvr.2_Missense_Mutation_p.P60L|MOSPD3_uc003uvs.2_Missense_Mutation_p.P60L|MOSPD3_uc003uvt.2_Missense_Mutation_p.P60L	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a	60	MSP.					integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CTCTATAACCCCACAGGAACT	0.647													28	139					0	0	1	0	0
ACTL6B	51412	broad.mit.edu	37	7	100244607	100244607	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100244607G>A	uc003uvy.2	-	10	1030	c.923C>T	c.(922-924)CCC>CTC	p.P308L	ACTL6B_uc003uvx.1_Missense_Mutation_p.P99L|ACTL6B_uc003uvz.2_RNA	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	308					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GACGTTCGAGGGATCAAACAG	0.622													7	55					0	0	1	0	0
EPO	2056	broad.mit.edu	37	7	100320391	100320391	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100320391C>A	uc003uwi.2	+	4	532	c.351C>A	c.(349-351)CCC>CCA	p.P117P	EPO_uc011kkc.1_Silent_p.P117P	NM_000799	NP_000790	P01588	EPO_HUMAN	erythropoietin precursor	117					blood circulation|cellular hyperosmotic response|erythrocyte maturation|negative regulation of apoptosis|negative regulation of ion transmembrane transporter activity|negative regulation of sodium ion transport|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat5 protein|signal transduction	extracellular space	erythropoietin receptor binding|eukaryotic cell surface binding|hormone activity			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	CGTGGGAGCCCCTGCAGCTGC	0.652													19	39					5.26018e-13	5.28255e-13	1	1	0
ZAN	7455	broad.mit.edu	37	7	100349594	100349594	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100349594C>T	uc003uwj.2	+	14	2031	c.1866C>T	c.(1864-1866)CCC>CCT	p.P622P	ZAN_uc003uwk.2_Silent_p.P622P|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	622	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCACCATTCCCTCAGAAAAAC	0.473													44	90					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100349739	100349739	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100349739T>A	uc003uwj.2	+	14	2176	c.2011T>A	c.(2011-2013)TCC>ACC	p.S671T	ZAN_uc003uwk.2_Missense_Mutation_p.S671T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	671	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GACCACCACCTCCATGGAAGA	0.522													25	68					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100349741	100349741	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100349741C>T	uc003uwj.2	+	14	2178	c.2013C>T	c.(2011-2013)TCC>TCT	p.S671S	ZAN_uc003uwk.2_Silent_p.S671S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	671	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCACCACCTCCATGGAAGAGC	0.522													25	69					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100349971	100349971	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100349971C>T	uc003uwj.2	+	14	2408	c.2243C>T	c.(2242-2244)CCC>CTC	p.P748L	ZAN_uc003uwk.2_Missense_Mutation_p.P748L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	748	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCCACCATCCCCACAGAAAAA	0.522													28	61					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100350329	100350329	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100350329C>T	uc003uwj.2	+	14	2766	c.2601C>T	c.(2599-2601)TCC>TCT	p.S867S	ZAN_uc003uwk.2_Silent_p.S867S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	867	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCACCATCTCCCCAGAAAAAC	0.483													42	116					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100361804	100361804	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100361804G>A	uc003uwj.2	+	22	4417	c.4252G>A	c.(4252-4254)GAA>AAA	p.E1418K	ZAN_uc003uwk.2_Missense_Mutation_p.E1418K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Intron	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1418	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GCCCTGGAGGGAACCCCACTT	0.428													4	14					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100373312	100373312	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100373312C>T	uc003uwj.2	+	34	6214	c.6049C>T	c.(6049-6051)CTC>TTC	p.L2017F	ZAN_uc003uwk.2_Missense_Mutation_p.L2017F|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.L104F	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2017	Extracellular (Potential).|VWFD 3.				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACAGGTCACCCTCCCCGCCAT	0.567													16	59					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100385647	100385647	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100385647C>T	uc003uwj.2	+	39	7281	c.7116C>T	c.(7114-7116)CTC>CTT	p.L2372L	ZAN_uc003uwk.2_Silent_p.L2372L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Silent_p.L422L	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2372	VWFD 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AGCCCCTCCTCGTGGAAGGAC	0.557													19	52					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100386959	100386959	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100386959G>A	uc003uwj.2	+	40	7512	c.7347G>A	c.(7345-7347)AGG>AGA	p.R2449R	ZAN_uc003uwk.2_Silent_p.R2449R|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Silent_p.R499R	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2449	VWFD 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TTGGTGGAAGGAAAAATGCAG	0.537													35	65					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100395072	100395072	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100395072G>A	uc003uwj.2	+	47	8516	c.8351G>A	c.(8350-8352)AGA>AAA	p.R2784K	ZAN_uc003uwk.2_Missense_Mutation_p.R2693K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.R733K	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2784	VWFC 5.|Cytoplasmic (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TGCATTTACAGAACGAGGAGG	0.622													17	51					0	0	1	0	0
EPHB4	2050	broad.mit.edu	37	7	100402849	100402849	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100402849C>T	uc003uwn.1	-	16	3264	c.2773G>A	c.(2773-2775)GAA>AAA	p.E925K	EPHB4_uc003uwm.1_Missense_Mutation_p.E832K|EPHB4_uc010lhj.1_Intron	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	925	Cytoplasmic (Potential).|SAM.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					AAACTTTCTTCGTATCTTCCC	0.602													4	16					0	0	1	0	0
SLC12A9	56996	broad.mit.edu	37	7	100454649	100454649	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100454649C>T	uc003uwp.2	+	5	750	c.608C>T	c.(607-609)TCC>TTC	p.S203F	SLC12A9_uc003uwo.1_Missense_Mutation_p.S114F|SLC12A9_uc003uwq.2_Missense_Mutation_p.S114F|SLC12A9_uc011kki.1_Intron|SLC12A9_uc003uwr.2_5'UTR|SLC12A9_uc003uws.2_5'UTR|SLC12A9_uc003uwt.2_5'UTR|SLC12A9_uc003uwv.2_5'Flank	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	203	Helical; (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					GTCTCTGGCTCCCTGGCCTCT	0.652													37	97					0	0	1	0	0
SLC12A9	56996	broad.mit.edu	37	7	100458845	100458845	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100458845C>T	uc003uwp.2	+	10	1446	c.1304C>T	c.(1303-1305)TCC>TTC	p.S435F	SLC12A9_uc003uwq.2_Missense_Mutation_p.S346F|SLC12A9_uc011kki.1_5'UTR|SLC12A9_uc003uwr.2_Missense_Mutation_p.S171F|SLC12A9_uc003uws.2_5'UTR|SLC12A9_uc003uwt.2_Missense_Mutation_p.S171F|SLC12A9_uc003uwv.2_5'UTR	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	435	Helical; (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					GTGGACCTGTCCTGCCTGAGC	0.632													42	121					0	0	1	0	0
ACHE	43	broad.mit.edu	37	7	100488880	100488880	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100488880C>T	uc003uxd.2	-	3	1789	c.1633G>A	c.(1633-1635)GAC>AAC	p.D545N	UFSP1_uc003uxc.3_5'Flank|ACHE_uc003uxe.2_Missense_Mutation_p.D545N|ACHE_uc003uxf.2_Missense_Mutation_p.D545N|ACHE_uc003uxg.2_Missense_Mutation_p.D545N|ACHE_uc003uxh.2_Missense_Mutation_p.D457N|ACHE_uc003uxi.2_Missense_Mutation_p.D545N	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor	545					acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	GGCCGCAGGTCCAGACTAACG	0.687													18	33					0	0	1	0	0
ACHE	43	broad.mit.edu	37	7	100491646	100491647	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100491646_100491647CC>TT	uc003uxd.2	-	1	363_364	c.207_208GG>AA	c.(205-210)GCGGAG>GCAAAG	p.E70K	ACHE_uc003uxe.2_Missense_Mutation_p.E70K|ACHE_uc003uxf.2_Missense_Mutation_p.E70K|ACHE_uc003uxg.2_Missense_Mutation_p.E70K|ACHE_uc003uxh.2_Missense_Mutation_p.E70K|ACHE_uc003uxi.2_Missense_Mutation_p.E70K|ACHE_uc003uxj.1_Missense_Mutation_p.E189K	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor	70					acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	ATGGGTGGCTCCGCAAAGGGGA	0.649													8	24					0	0	1	0	0
ACHE	43	broad.mit.edu	37	7	100491719	100491720	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100491719_100491720CC>TT	uc003uxd.2	-	1	290_291	c.134_135GG>AA	c.(133-135)GGG>GAA	p.G45E	ACHE_uc003uxe.2_Missense_Mutation_p.G45E|ACHE_uc003uxf.2_Missense_Mutation_p.G45E|ACHE_uc003uxg.2_Missense_Mutation_p.G45E|ACHE_uc003uxh.2_Missense_Mutation_p.G45E|ACHE_uc003uxi.2_Missense_Mutation_p.G45E|ACHE_uc003uxj.1_Missense_Mutation_p.G164E	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor	45					acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	GCAGCCGGCCCCCACGCACCGT	0.693													3	15					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	100551777	100551777	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100551777C>T	uc003uxk.1	+	1		c.1028C>T			uc003uxl.1_Silent_p.I76I					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TGAGCACGATCGTGTCAACAT	0.473													42	517					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100675256	100675256	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100675256C>T	uc003uxp.1	+	3	612	c.559C>T	c.(559-561)CCT>TCT	p.P187S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	187	Extracellular (Potential).|1.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TATGAGCACACCTCTGACCAC	0.428													57	277					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100677281	100677281	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100677281G>A	uc003uxp.1	+	3	2637	c.2584G>A	c.(2584-2586)GAA>AAA	p.E862K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	862	Extracellular (Potential).|12.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTTATAGTGAAGGAAGAAC	0.488													181	478					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100677717	100677717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100677717C>T	uc003uxp.1	+	3	3073	c.3020C>T	c.(3019-3021)CCT>CTT	p.P1007L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1007	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|14.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCAACAACTCCTGTTGACTCC	0.522													195	550					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100678234	100678234	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100678234C>T	uc003uxp.1	+	3	3590	c.3537C>T	c.(3535-3537)ACC>ACT	p.T1179T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1179	Extracellular (Potential).|59 X approximate tandem repeats.|17.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGGCTAACACCCTTTCAACAA	0.522													110	479					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100678659	100678659	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100678659C>T	uc003uxp.1	+	3	4015	c.3962C>T	c.(3961-3963)CCT>CTT	p.P1321L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1321	Extracellular (Potential).|20.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCTCCTACACCTGCTGAAGGT	0.473													111	445					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100679051	100679051	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100679051G>A	uc003uxp.1	+	3	4407	c.4354G>A	c.(4354-4356)GAA>AAA	p.E1452K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1452	Extracellular (Potential).|Ser-rich.|22.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTAGTGAAGGAAAGAC	0.493													98	454					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100679638	100679639	+	Missense_Mutation	DNP	GG	AA	AA	rs145386724		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100679638_100679639GG>AA	uc003uxp.1	+	3	4994_4995	c.4941_4942GG>AA	c.(4939-4944)GAGGCT>GAAACT	p.A1648T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1648	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|25.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCAGTCCTGAGGCTAGCACCCT	0.505													130	516					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100679883	100679883	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100679883C>T	uc003uxp.1	+	3	5239	c.5186C>T	c.(5185-5187)TCA>TTA	p.S1729L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1729	Extracellular (Potential).|59 X approximate tandem repeats.|27.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGCCCGTTCATCTCCTACA	0.507													159	451					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100680532	100680532	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100680532C>T	uc003uxp.1	+	3	5888	c.5835C>T	c.(5833-5835)ACC>ACT	p.T1945T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1945	Extracellular (Potential).|30.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AAATCAACACCCTTTCAACAA	0.502													146	375					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100680818	100680818	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100680818G>A	uc003uxp.1	+	3	6174	c.6121G>A	c.(6121-6123)GAA>AAA	p.E2041K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2041	Extracellular (Potential).|32.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTAGTGAACGGACCAC	0.498													76	223					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100681119	100681119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100681119C>T	uc003uxp.1	+	3	6475	c.6422C>T	c.(6421-6423)TCA>TTA	p.S2141L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2141	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|34.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGTCAGTTCATCTCCTATA	0.502													117	368					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100681286	100681286	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100681286G>A	uc003uxp.1	+	3	6642	c.6589G>A	c.(6589-6591)GAA>AAA	p.E2197K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2197	Extracellular (Potential).|35.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAATTCTACTGAAGCCCGTTC	0.498													205	508					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100681346	100681346	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100681346G>A	uc003uxp.1	+	3	6702	c.6649G>A	c.(6649-6651)GAA>AAA	p.E2217K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2217	Extracellular (Potential).|35.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTAGTGAAGGAAGCAC	0.507													235	563					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100683361	100683361	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100683361C>T	uc003uxp.1	+	3	8717	c.8664C>T	c.(8662-8664)ACC>ACT	p.T2888T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2888	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|46.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGGCTAGCACCCTTTCAACAA	0.483													171	478					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100684479	100684479	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100684479C>T	uc003uxp.1	+	3	9835	c.9782C>T	c.(9781-9783)TCA>TTA	p.S3261L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3261	Extracellular (Potential).|Ser-rich.|53.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGCCAGTTCATCTCCTCCC	0.527													214	469					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100684591	100684591	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100684591G>A	uc003uxp.1	+	3	9947	c.9894G>A	c.(9892-9894)ACG>ACA	p.T3298T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3298	Extracellular (Potential).|Ser-rich.|53.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTTCTGAAACGAGCACCCTTT	0.507													252	514					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100685369	100685370	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100685369_100685370CC>TT	uc003uxp.1	+	3	10725_10726	c.10672_10673CC>TT	c.(10672-10674)CCA>TTA	p.P3558L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3558	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAGTTCATCTCCAGCAACTCTT	0.48													45	398					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100685641	100685641	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100685641C>T	uc003uxp.1	+	3	10997	c.10944C>T	c.(10942-10944)ACC>ACT	p.T3648T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3648	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|58.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CATCGGTGACCATTTCTGAGG	0.488													75	187					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100686297	100686297	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100686297C>T	uc003uxp.1	+	3	11653	c.11600C>T	c.(11599-11601)TCA>TTA	p.S3867L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3867	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATACGTATTTCAATTACCAGT	0.478													51	92					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100686794	100686795	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100686794_100686795AC>TT	uc003uxp.1	+	3	12150_12151	c.12097_12098AC>TT	c.(12097-12099)ACA>TTA	p.T4033L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4033	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGCAACCAGTACACCTCACACC	0.525													62	173					0	0	1	0	0
TRIM56	81844	broad.mit.edu	37	7	100730827	100730827	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100730827C>T	uc003uxq.2	+	3	465	c.234C>T	c.(232-234)TTC>TTT	p.F78F	TRIM56_uc003uxr.2_Silent_p.F78F	NM_030961	NP_112223	Q9BRZ2	TRI56_HUMAN	tripartite motif-containing 56	78					defense response to virus|interferon-beta production|protein K63-linked ubiquitination|response to type I interferon	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			kidney(1)|central_nervous_system(1)|skin(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)					CCAACTTCTTCGTCAATGGGC	0.692													45	78					0	0	1	0	0
SERPINE1	5054	broad.mit.edu	37	7	100777118	100777118	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100777118C>T	uc003uxt.2	+	5	991	c.843C>T	c.(841-843)CTC>CTT	p.L281L	SERPINE1_uc011kkj.1_Silent_p.L266L|SERPINE1_uc003uxu.1_Silent_p.L112L	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	281				QLI -> HVM (in Ref. 7; CAA31208).	angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	GTGCCCAGCTCATCAGCCACT	0.587													26	77					0	0	1	0	0
C7orf52	375607	broad.mit.edu	37	7	100815389	100815389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100815389C>T	uc003uxy.1	-	4	1320	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	C7orf52_uc003uxz.1_Missense_Mutation_p.E361K	NM_198571	NP_940973	Q8N8M0	CG052_HUMAN	hypothetical protein LOC375607	361							N-acetyltransferase activity			ovary(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					AGGTACTGTTCAGTATAACCC	0.622													17	51					0	0	1	0	0
C7orf52	375607	broad.mit.edu	37	7	100817986	100817986	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100817986C>T	uc003uxy.1	-	2	342	c.103G>A	c.(103-105)GAG>AAG	p.E35K	C7orf52_uc003uxz.1_Missense_Mutation_p.E35K|C7orf52_uc003uya.1_Missense_Mutation_p.E35K|C7orf52_uc003uyb.1_Missense_Mutation_p.E35K	NM_198571	NP_940973	Q8N8M0	CG052_HUMAN	hypothetical protein LOC375607	35							N-acetyltransferase activity			ovary(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					GCCTCCACCTCCTGTGGCCGG	0.637													32	90					0	0	1	0	0
MOGAT3	346606	broad.mit.edu	37	7	100839271	100839271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:100839271C>T	uc003uyc.2	-	7	1149	c.982G>A	c.(982-984)GAA>AAA	p.E328K	MOGAT3_uc010lhr.2_Missense_Mutation_p.G260E	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	328					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					CCACAGCTTTCCTTGTGCTCC	0.647													32	59					0	0	1	0	0
EMID2	136227	broad.mit.edu	37	7	101183219	101183219	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101183219G>A	uc010lhy.1	+	5	679	c.487G>A	c.(487-489)GAC>AAC	p.D163N	EMID2_uc003uyo.1_Missense_Mutation_p.D165N	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	165						collagen				ovary(1)	1	Lung NSC(181;0.215)					CCCGGACAACGACCTGCCAGC	0.632													12	43					0	0	1	0	0
EMID2	136227	broad.mit.edu	37	7	101188637	101188637	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101188637G>A	uc010lhy.1	+	7	908	c.716G>A	c.(715-717)GGG>GAG	p.G239E	EMID2_uc003uyo.1_Missense_Mutation_p.G241E	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	241	Collagen-like 1.					collagen				ovary(1)	1	Lung NSC(181;0.215)					GGGCCTCCAGGGCCCCGTGGG	0.632													15	19					0	0	1	0	0
MYL10	93408	broad.mit.edu	37	7	101256771	101256771	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101256771C>T	uc003uyr.2	-	8	843	c.665G>A	c.(664-666)GGT>GAT	p.G222D		NM_138403	NP_612412	Q9BUA6	MYL10_HUMAN	myosin, light chain 10, regulatory	222	EF-hand 3.					mitochondrion	calcium ion binding			ovary(1)|breast(1)	2						CTTCTCTTCACCGTGAGTGAT	0.547													14	91					0	0	1	0	0
MYL10	93408	broad.mit.edu	37	7	101256829	101256829	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101256829G>A	uc003uyr.2	-	8	785	c.607C>T	c.(607-609)CCC>TCC	p.P203S		NM_138403	NP_612412	Q9BUA6	MYL10_HUMAN	myosin, light chain 10, regulatory	203	EF-hand 3.					mitochondrion	calcium ion binding			ovary(1)|breast(1)	2						ACATCTGGGGGAAATGCTGCA	0.557													33	94					0	0	1	0	0
MYL10	93408	broad.mit.edu	37	7	101265448	101265448	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101265448C>T	uc003uyr.2	-	5	560	c.382G>A	c.(382-384)GCC>ACC	p.A128T		NM_138403	NP_612412	Q9BUA6	MYL10_HUMAN	myosin, light chain 10, regulatory	128						mitochondrion	calcium ion binding			ovary(1)|breast(1)	2						TTCACCATGGCCTCCAGTTCC	0.602													10	54					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101671417	101671417	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101671417C>T	uc003uyx.3	+	3	219	c.181C>T	c.(181-183)CAA>TAA	p.Q61*	CUX1_uc003uys.3_Nonsense_Mutation_p.Q72*|CUX1_uc003uyt.2_Nonsense_Mutation_p.Q72*|CUX1_uc011kkn.1_Nonsense_Mutation_p.Q35*|CUX1_uc003uyw.2_Nonsense_Mutation_p.Q72*|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Nonsense_Mutation_p.Q72*	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	61	Potential.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GAAGAGTTTCCAAGGAGAGGT	0.473													7	73					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101839977	101839977	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101839977C>T	uc003uyx.3	+	15	1324	c.1286C>T	c.(1285-1287)CCC>CTC	p.P429L	CUX1_uc003uys.3_Missense_Mutation_p.P440L|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	429					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TTGCCGGCCCCCCCTCCTTCT	0.567													34	87					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101844953	101844953	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101844953C>T	uc003uyx.3	+	18	2414	c.2376C>T	c.(2374-2376)CCC>CCT	p.P792P	CUX1_uc003uys.3_Silent_p.P803P|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	792					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						AGGACGCCCCCGGGCTGGACC	0.667													20	39					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101845424	101845424	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101845424C>T	uc003uyx.3	+	18	2885	c.2847C>T	c.(2845-2847)ACC>ACT	p.T949T	CUX1_uc003uys.3_Silent_p.T960T|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	949	CUT 2.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TCGAGCTCACCCGGCAGGTTA	0.597													12	139					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101892274	101892274	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101892274C>T	uc003uyx.3	+	24	4508	c.4470C>T	c.(4468-4470)CGC>CGT	p.R1490R	CUX1_uc003uys.3_Silent_p.R1501R|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1490					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TCATCCACCGCCTGGAGAAGG	0.706													5	14					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101918575	101918575	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101918575C>T	uc003uyt.2	+	17	1527	c.1508C>T	c.(1507-1509)TCC>TTC	p.S503F	CUX1_uc011kkn.1_Missense_Mutation_p.S464F|CUX1_uc003uyw.2_Missense_Mutation_p.S457F|CUX1_uc003uyv.2_Missense_Mutation_p.S487F|CUX1_uc003uyu.2_Missense_Mutation_p.S501F|CUX1_uc003uyz.2_RNA	NM_001913	NP_001904	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform b	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TCACTGCTTTCCATCATCTCC	0.642													30	72					0	0	1	0	0
SH2B2	10603	broad.mit.edu	37	7	101957774	101957774	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:101957774C>T	uc011kko.1	+	5	1481	c.1436C>T	c.(1435-1437)CCC>CTC	p.P479L		NM_020979	NP_066189	O14492	SH2B2_HUMAN	SH2B adaptor protein 2	436	SH2.				blood coagulation|insulin receptor signaling pathway|intracellular signal transduction	cytosol|plasma membrane	JAK pathway signal transduction adaptor activity|SH3/SH2 adaptor activity|signal transducer activity				0						GCAGGGGGGCCCCGGAACCAC	0.627													11	19					0	0	1	0	0
ALKBH4	54784	broad.mit.edu	37	7	102097929	102097929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:102097929G>A	uc003uzl.2	-	3	826	c.821C>T	c.(820-822)TCG>TTG	p.S274L	ALKBH4_uc003uzm.2_Missense_Mutation_p.S201L	NM_017621	NP_060091	Q9NXW9	ALKB4_HUMAN	alkB, alkylation repair homolog 4	274						cytoplasm|nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						AAACTCAGCCGACAGCTCCCG	0.667													14	37					0	0	1	0	0
FBXL13	222235	broad.mit.edu	37	7	102665589	102665589	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:102665589C>T	uc003vaq.2	-	6	843	c.416G>A	c.(415-417)CGA>CAA	p.R139Q	FBXL13_uc010liq.1_5'UTR|FBXL13_uc010lir.1_Missense_Mutation_p.R139Q|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.R139Q|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	139											0						AGAAGAACTTCGTTCAGGAAA	0.318													7	44					0	0	1	0	0
SLC26A5	375611	broad.mit.edu	37	7	103029809	103029809	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103029809G>A	uc003vbz.2	-	13	1610	c.1374C>T	c.(1372-1374)CTC>CTT	p.L458L	SLC26A5_uc003vbt.1_Silent_p.L458L|SLC26A5_uc003vbu.1_Silent_p.L458L|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Intron|SLC26A5_uc003vby.2_Intron|SLC26A5_uc010liy.2_Intron	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	458	Helical; Name=11; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						AGAAAAAGGGGAGATCTGAGA	0.438													28	73					0	0	1	0	0
SLC26A5	375611	broad.mit.edu	37	7	103032170	103032171	+	Silent	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103032170_103032171GG>AA	uc003vbz.2	-	11	1367_1368	c.1131_1132CC>TT	c.(1129-1134)GCCCTG>GCTTTG	p.377_378AL>AL	SLC26A5_uc003vbt.1_Silent_p.377_378AL>AL|SLC26A5_uc003vbu.1_Silent_p.377_378AL>AL|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Silent_p.377_378AL>AL|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	377_378	Helical; Name=9; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CACAGTCCCAGGGCAATGAGCT	0.436													5	26					0	0	1	0	0
SLC26A5	375611	broad.mit.edu	37	7	103051925	103051925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103051925C>T	uc003vbz.2	-	6	748	c.512G>A	c.(511-513)AGA>AAA	p.R171K	SLC26A5_uc003vbt.1_Missense_Mutation_p.R171K|SLC26A5_uc003vbu.1_Missense_Mutation_p.R171K|SLC26A5_uc003vbv.1_Missense_Mutation_p.R171K|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.R171K|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	171	Extracellular (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CAAGGCATCTCTGGCCTCTGT	0.448													24	78					0	0	1	0	0
SLC26A5	375611	broad.mit.edu	37	7	103061833	103061833	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103061833C>T	uc003vbz.2	-	3	365	c.129G>A	c.(127-129)GCG>GCA	p.A43A	SLC26A5_uc003vbt.1_Silent_p.A43A|SLC26A5_uc003vbu.1_Silent_p.A43A|SLC26A5_uc003vbv.1_Silent_p.A43A|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Silent_p.A43A|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	43	Cytoplasmic (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						TCAGCTTATCCGCAATGGAAT	0.433													10	49					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103124179	103124179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103124179C>T	uc003vca.2	-	62	10262	c.10102G>A	c.(10102-10104)GGG>AGG	p.G3368R	RELN_uc010liz.2_Missense_Mutation_p.G3368R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3368	BNR 16.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CAGGTGATCCCGTTGTTGACG	0.557													32	130					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103126831	103126831	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103126831G>A	uc003vca.2	-	61	9956	c.9796C>T	c.(9796-9798)CCC>TCC	p.P3266S	RELN_uc010liz.2_Missense_Mutation_p.P3266S	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3266					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ATATAACTGGGAAGGTCGTGA	0.463													23	53					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103137058	103137058	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103137058C>T	uc003vca.2	-	56	9268	c.9108G>A	c.(9106-9108)GTG>GTA	p.V3036V	RELN_uc010liz.2_Silent_p.V3036V	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3036					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GAGCACGCTCCACCCCAGAGA	0.483													20	72					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103143606	103143606	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103143606G>A	uc003vca.2	-	52	8506	c.8346C>T	c.(8344-8346)TTC>TTT	p.F2782F	RELN_uc010liz.2_Silent_p.F2782F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2782	BNR 13.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AACTCACACCGAAGTCAGTAG	0.408													35	73					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103143635	103143635	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103143635G>A	uc003vca.2	-	52	8477	c.8317C>T	c.(8317-8319)CAA>TAA	p.Q2773*	RELN_uc010liz.2_Nonsense_Mutation_p.Q2773*	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2773					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACATGAATTTGATTCTGGGCA	0.383													9	91					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103155868	103155868	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103155868G>A	uc003vca.2	-	50	8043	c.7883C>T	c.(7882-7884)CCT>CTT	p.P2628L	RELN_uc010liz.2_Missense_Mutation_p.P2628L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2628					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AGCATCAGGAGGGAGAAGGAT	0.478													15	36					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103180703	103180703	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103180703G>A	uc003vca.2	-	44	7031	c.6871C>T	c.(6871-6873)CTT>TTT	p.L2291F	RELN_uc010liz.2_Missense_Mutation_p.L2291F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2291					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CACCAGCGAAGGCGAGTAGAA	0.498													34	94					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103191703	103191703	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103191703G>A	uc003vca.2	-	41	6273	c.6113C>T	c.(6112-6114)CCA>CTA	p.P2038L	RELN_uc010liz.2_Missense_Mutation_p.P2038L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2038					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CAGTCTCACTGGATCCGCGGA	0.502													18	48					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103202396	103202396	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103202396G>A	uc003vca.2	-	35	5375	c.5215C>T	c.(5215-5217)CCC>TCC	p.P1739S	RELN_uc010liz.2_Missense_Mutation_p.P1739S	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1739					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CGGGTCCTGGGAGAACTAACC	0.433													7	16					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103230142	103230142	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103230142C>T	uc003vca.2	-	28	4206	c.4046G>A	c.(4045-4047)GGA>GAA	p.G1349E	RELN_uc010liz.2_Missense_Mutation_p.G1349E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1349					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TCTGGAGTTTCCTTCGCATCC	0.478													39	109					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103294550	103294550	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103294550G>A	uc003vca.2	-	13	1704	c.1544C>T	c.(1543-1545)TCC>TTC	p.S515F	RELN_uc010liz.2_Missense_Mutation_p.S515F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	515					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTTATATGAGGAATAGGAAAG	0.428													23	64					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103294589	103294589	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103294589C>T	uc003vca.2	-	13	1665	c.1505G>A	c.(1504-1506)GGA>GAA	p.G502E	RELN_uc010liz.2_Missense_Mutation_p.G502E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	502					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTCTTTTCTTCCTTCAATTTT	0.398													28	79					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103557528	103557528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103557528C>T	uc003vca.2	-	2	491	c.331G>A	c.(331-333)GGA>AGA	p.G111R	RELN_uc010liz.2_Missense_Mutation_p.G111R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	111	Reelin.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity	p.G111R(1)		ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TTACCAAATCCGAAAGCACTG	0.388													39	98					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103629630	103629630	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:103629630G>A	uc003vca.2	-	1	334	c.174C>T	c.(172-174)TCC>TCT	p.S58S	RELN_uc010liz.2_Silent_p.S58S	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	58	Reelin.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CAATATGCAGGGAAATGAGCA	0.652													15	60					0	0	1	0	0
MLL5	55904	broad.mit.edu	37	7	104703895	104703895	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:104703895C>T	uc003vcm.2	+	5	818	c.284C>T	c.(283-285)CCT>CTT	p.P95L	MLL5_uc010lja.1_5'UTR|MLL5_uc010ljb.1_Missense_Mutation_p.P95L|MLL5_uc003vcl.2_Missense_Mutation_p.P95L|MLL5_uc010ljc.2_Missense_Mutation_p.P95L	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	95					cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						TTTACCACTCCTAATTTTGAT	0.438													37	101					0	0	1	0	0
PUS7	54517	broad.mit.edu	37	7	105105785	105105785	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:105105785G>A	uc003vcx.2	-	13	1821	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F	PUS7_uc010lji.2_Silent_p.F540F|PUS7_uc003vcy.2_Silent_p.F534F|PUS7_uc003vcz.1_Silent_p.F534F	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	534	TRUD.				pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						AGATAACATCGAAACCAGGCA	0.343													17	46					0	0	1	0	0
RINT1	60561	broad.mit.edu	37	7	105190518	105190518	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:105190518C>T	uc003vda.1	+	8	1244	c.1013C>T	c.(1012-1014)GCT>GTT	p.A338V	RINT1_uc010ljj.1_Intron	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	338	RINT1/TIP20.				cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						TGGTACTTGGCTCAAGTACTT	0.348													24	63					0	0	1	0	0
CDHR3	222256	broad.mit.edu	37	7	105645016	105645016	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:105645016C>T	uc003vdl.3	+	8	1043	c.935C>T	c.(934-936)TCC>TTC	p.S312F	CDHR3_uc003vdk.2_5'UTR|CDHR3_uc011kls.1_RNA|CDHR3_uc003vdm.3_Missense_Mutation_p.S299F|CDHR3_uc011klt.1_Missense_Mutation_p.S224F|CDHR3_uc003vdn.2_Missense_Mutation_p.S29F	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	312	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CCCACCATTTCCCTGGAAGTT	0.483													11	33					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106508298	106508298	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:106508298C>T	uc003vdv.3	+	2	377	c.292C>T	c.(292-294)CTG>TTG	p.L98L	PIK3CG_uc003vdu.2_Silent_p.L98L|PIK3CG_uc003vdw.2_Silent_p.L98L	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	98					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TCACTTCCTCCTGCTCTATCA	0.627													9	30					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106509747	106509747	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:106509747G>A	uc003vdv.3	+	2	1826	c.1741G>A	c.(1741-1743)GAA>AAA	p.E581K	PIK3CG_uc003vdu.2_Missense_Mutation_p.E581K|PIK3CG_uc003vdw.2_Missense_Mutation_p.E581K	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	581					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TTTTAGATACGAAAGCCTTAA	0.453													39	71					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106526580	106526580	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:106526580G>A	uc003vdv.3	+	10	2958	c.2873G>A	c.(2872-2874)GGA>GAA	p.G958E	PIK3CG_uc003vdu.2_Missense_Mutation_p.G958E|PIK3CG_uc003vdw.2_Missense_Mutation_p.G958E	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	958	PI3K/PI4K.				G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TTCTCTTAAGGAAACCTATTT	0.373													13	45					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106526727	106526727	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:106526727A>G	uc003vdv.3	+	10	3105	c.3020A>G	c.(3019-3021)CAG>CGG	p.Q1007R	PIK3CG_uc003vdu.2_Missense_Mutation_p.Q1007R|PIK3CG_uc003vdw.2_Missense_Mutation_p.Q1007R	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	1007	PI3K/PI4K.				G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						CCACACTTCCAGAAATTTCAG	0.493													24	48					0	0	1	0	0
PRKAR2B	5577	broad.mit.edu	37	7	106710741	106710741	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:106710741G>A	uc003vdx.2	+	2	498	c.323G>A	c.(322-324)CGA>CAA	p.R108Q		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	108	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						GTAATAAACCGATTCACAAGG	0.313													26	74					0	0	1	0	0
GPR22	2845	broad.mit.edu	37	7	107115332	107115332	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107115332G>A	uc003vef.2	+	3	2173	c.827G>A	c.(826-828)GGT>GAT	p.G276D	COG5_uc003vec.2_Intron|COG5_uc003ved.2_Intron|COG5_uc003vee.2_Intron	NM_005295	NP_005286	Q99680	GPR22_HUMAN	G protein-coupled receptor 22	276	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2						CAAAGCAGTGGTGGGAGAAAT	0.433													26	69					0	0	1	0	0
GPR22	2845	broad.mit.edu	37	7	107115577	107115577	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107115577G>A	uc003vef.2	+	3	2418	c.1072G>A	c.(1072-1074)GGA>AGA	p.G358R	COG5_uc003vec.2_Intron|COG5_uc003ved.2_Intron|COG5_uc003vee.2_Intron	NM_005295	NP_005286	Q99680	GPR22_HUMAN	G protein-coupled receptor 22	358	Helical; Name=7; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2						CATGGCTTATGGAACAACTAT	0.313													40	92					0	0	1	0	0
SLC26A4	5172	broad.mit.edu	37	7	107314668	107314668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107314668G>A	uc003vep.2	+	5	699	c.475G>A	c.(475-477)GAA>AAA	p.E159K		NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	159	Extracellular (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						GGCCCCCGACGAACACTTTCT	0.433									Pendred_syndrome				41	110					0	0	1	0	0
SLC26A3	1811	broad.mit.edu	37	7	107408046	107408046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107408046C>T	uc003ver.2	-	20	2460	c.2249G>A	c.(2248-2250)GGA>GAA	p.G750E	SLC26A3_uc003ves.2_Missense_Mutation_p.G637E	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	750					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						ATTACGTAATCCTCCATTTGT	0.333													13	26					0	0	1	0	0
SLC26A3	1811	broad.mit.edu	37	7	107416969	107416969	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107416969C>T	uc003ver.2	-	15	1816	c.1605G>A	c.(1603-1605)GTG>GTA	p.V535V	SLC26A3_uc003ves.2_Silent_p.V500V	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	535	STAS.				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TGAAAATTTTCACTCCTTCTG	0.358													23	91					0	0	1	0	0
SLC26A3	1811	broad.mit.edu	37	7	107423438	107423438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107423438C>T	uc003ver.2	-	10	1431	c.1220G>A	c.(1219-1221)GGA>GAA	p.G407E	SLC26A3_uc003ves.2_Missense_Mutation_p.G372E	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	407					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TGTTTTGCCTCCTGTGCTCTC	0.468													40	83					0	0	1	0	0
SLC26A3	1811	broad.mit.edu	37	7	107430033	107430033	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107430033G>A	uc003ver.2	-	6	882	c.671C>T	c.(670-672)TCC>TTC	p.S224F	SLC26A3_uc003ves.2_Missense_Mutation_p.S189F	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	224					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TTTGAGTTGGGAAACCAAAAC	0.393													4	44					0	0	1	0	0
SLC26A3	1811	broad.mit.edu	37	7	107430068	107430068	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107430068G>A	uc003ver.2	-	6	847	c.636C>T	c.(634-636)GGC>GGT	p.G212G	SLC26A3_uc003ves.2_Silent_p.G177G	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	212	Helical; (Potential).				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						CAGTAGTGAAGCCACTGATGA	0.423													7	37					0	0	1	0	0
LAMB1	3912	broad.mit.edu	37	7	107600912	107600912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107600912G>A	uc003vew.2	-	18	2627	c.2292C>T	c.(2290-2292)GCC>GCT	p.A764A	LAMB1_uc003vev.2_Silent_p.A788A|LAMB1_uc003vex.2_Silent_p.A764A	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	764	Laminin IV type B.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGTGTAACAGGGCAGAAATGC	0.488													5	70					0	0	1	0	0
LAMB1	3912	broad.mit.edu	37	7	107601054	107601054	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107601054G>A	uc003vew.2	-	18	2485	c.2150C>T	c.(2149-2151)ACC>ATC	p.T717I	LAMB1_uc003vev.2_Missense_Mutation_p.T741I|LAMB1_uc003vex.2_Missense_Mutation_p.T717I	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	717	Laminin IV type B.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACCTCCCACGGTGAAGATGTC	0.493													17	59					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107674717	107674717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107674717C>T	uc010ljo.1	-	31	4838	c.4754G>A	c.(4753-4755)CGG>CAG	p.R1585Q	LAMB4_uc003vey.2_Missense_Mutation_p.R1585Q|LAMB4_uc010ljp.1_Missense_Mutation_p.R554Q	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1585	Potential.|Domain I.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						AGAGTTTGCCCGTCCTTGAGT	0.338													55	132					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107677897	107677897	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107677897C>T	uc010ljo.1	-	30	4699	c.4615G>A	c.(4615-4617)GAA>AAA	p.E1539K	LAMB4_uc003vey.2_Missense_Mutation_p.E1539K|LAMB4_uc010ljp.1_Missense_Mutation_p.E508K	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1539	Potential.|Domain I.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						AACCTGTTTTCATCTGTCCTG	0.388													77	252					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107684286	107684286	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107684286C>T	uc010ljo.1	-	29	4466	c.4382G>A	c.(4381-4383)AGG>AAG	p.R1461K	LAMB4_uc003vey.2_Missense_Mutation_p.R1461K|LAMB4_uc010ljp.1_Missense_Mutation_p.R430K	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1461	Potential.|Domain I.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CAGTTTTTCCCTCAGCTGTAA	0.323													19	61					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107703405	107703405	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107703405C>T	uc010ljo.1	-	23	3180	c.3096G>A	c.(3094-3096)ATG>ATA	p.M1032I	LAMB4_uc003vey.2_Missense_Mutation_p.M1032I|LAMB4_uc010ljp.1_Missense_Mutation_p.M1I	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1032	Laminin EGF-like 11.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						GGGGACACTCCATGGGACTCA	0.532													18	39					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107706335	107706335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107706335G>A	uc010ljo.1	-	21	2792	c.2708C>T	c.(2707-2709)TCT>TTT	p.S903F	LAMB4_uc003vey.2_Missense_Mutation_p.S903F|LAMB4_uc010ljp.1_5'Flank	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	903	Laminin EGF-like 8.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CTGTCCTGAAGAAGGATTTCC	0.433													8	118					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107710318	107710318	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107710318G>A	uc010ljo.1	-	18	2221	c.2137C>T	c.(2137-2139)CCC>TCC	p.P713S	LAMB4_uc003vey.2_Missense_Mutation_p.P713S	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	713	Laminin IV type B.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						TTGATTTGGGGAATAAGGCCA	0.358													28	69					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107732116	107732116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107732116G>A	uc010ljo.1	-	14	1740	c.1656C>T	c.(1654-1656)CTC>CTT	p.L552L	LAMB4_uc003vey.2_Silent_p.L552L	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	552	Laminin EGF-like 5; truncated.|Laminin IV type B.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CTGCCTCGTAGAGATAGAAAT	0.493													32	90					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107732807	107732807	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107732807C>T	uc010ljo.1	-	13	1609	c.1525G>A	c.(1525-1527)GAT>AAT	p.D509N	LAMB4_uc003vey.2_Missense_Mutation_p.D509N	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	509	Laminin EGF-like 5; truncated.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CCTCCAATATCACAGTCACAG	0.383													24	58					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107743504	107743504	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107743504G>A	uc010ljo.1	-	10	1249	c.1165C>T	c.(1165-1167)CCC>TCC	p.P389S	LAMB4_uc003vey.2_Missense_Mutation_p.P389S	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	389	Laminin EGF-like 2.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CACGCGTAGGGATCTGAGATG	0.597													9	24					0	0	1	0	0
NRCAM	4897	broad.mit.edu	37	7	107848059	107848059	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:107848059G>A	uc003vfb.2	-	13	1591	c.1120C>T	c.(1120-1122)CCA>TCA	p.P374S	NRCAM_uc003vfc.2_Missense_Mutation_p.P368S|NRCAM_uc011kmk.1_Missense_Mutation_p.P369S|NRCAM_uc003vfd.2_Missense_Mutation_p.P350S|NRCAM_uc003vfe.2_Missense_Mutation_p.P350S	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	374	Ig-like 4.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						TCCTCTCCTGGGGACAGCACA	0.438													4	53					0	0	1	0	0
PNPLA8	50640	broad.mit.edu	37	7	108119732	108119732	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:108119732G>A	uc003vff.1	-	11	2377	c.1970C>T	c.(1969-1971)TCC>TTC	p.S657F	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Missense_Mutation_p.S657F|PNPLA8_uc003vfi.1_Missense_Mutation_p.S557F|PNPLA8_uc003vfj.1_Missense_Mutation_p.S657F|PNPLA8_uc003vfk.1_Missense_Mutation_p.S557F	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	657					fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						AGTGCCCAGGGATACTATGCA	0.418													40	117					0	0	1	0	0
PNPLA8	50640	broad.mit.edu	37	7	108138000	108138000	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:108138000G>A	uc003vff.1	-	7	1787	c.1380C>T	c.(1378-1380)ACC>ACT	p.T460T	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Silent_p.T460T|PNPLA8_uc003vfi.1_Silent_p.T360T|PNPLA8_uc003vfj.1_Silent_p.T460T|PNPLA8_uc003vfk.1_Silent_p.T360T	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	460	Patatin.				fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						ATTTTCGTAGGGTCTGGAGAG	0.343													24	46					0	0	1	0	0
LRRN3	54674	broad.mit.edu	37	7	110763690	110763690	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:110763690G>A	uc003vft.3	+	4	1908	c.862G>A	c.(862-864)GAG>AAG	p.E288K	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Missense_Mutation_p.E288K|LRRN3_uc003vfs.3_Missense_Mutation_p.E288K	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	288	Extracellular (Potential).|LRR 10.					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		ACACTTAAAAGAGTTGGGGAT	0.333													38	85					0	0	1	0	0
LRRN3	54674	broad.mit.edu	37	7	110764073	110764073	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:110764073G>A	uc003vft.3	+	4	2291	c.1245G>A	c.(1243-1245)ATG>ATA	p.M415I	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Missense_Mutation_p.M415I|LRRN3_uc003vfs.3_Missense_Mutation_p.M415I	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	415	Extracellular (Potential).|LRRCT.					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		TCAGGGACATGATGGAAATTT	0.443													27	88					0	0	1	0	0
LRRN3	54674	broad.mit.edu	37	7	110764629	110764629	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:110764629A>G	uc003vft.3	+	4	2847	c.1801A>G	c.(1801-1803)AAA>GAA	p.K601E	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Missense_Mutation_p.K601E|LRRN3_uc003vfs.3_Missense_Mutation_p.K601E	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	601	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		CATCTATCAGAAAAACAGAAA	0.348													5	58					0	0	1	0	0
DOCK4	9732	broad.mit.edu	37	7	111430622	111430622	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:111430622G>A	uc003vfx.2	-	31	3475	c.3206C>T	c.(3205-3207)CCC>CTC	p.P1069L	DOCK4_uc011kmm.1_5'Flank|DOCK4_uc003vfw.2_Missense_Mutation_p.P510L|DOCK4_uc003vfy.2_Missense_Mutation_p.P1105L	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1069					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TTCTAGGAAGGGGCCAATCAG	0.403													4	37					0	0	1	0	0
DOCK4	9732	broad.mit.edu	37	7	111540568	111540568	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:111540568C>T	uc003vfx.2	-	15	1611	c.1342G>A	c.(1342-1344)GAG>AAG	p.E448K	DOCK4_uc003vfy.2_Missense_Mutation_p.E448K|DOCK4_uc003vga.1_Missense_Mutation_p.E53K	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	448	DHR-1.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				GCTGGTGGCTCCCCAGAGCCG	0.453													9	19					0	0	1	0	0
DOCK4	9732	broad.mit.edu	37	7	111584888	111584888	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:111584888G>A	uc003vfx.2	-	10	1091	c.822C>T	c.(820-822)ATC>ATT	p.I274I	DOCK4_uc003vfy.2_Silent_p.I274I|DOCK4_uc003vga.1_5'UTR|DOCK4_uc010ljt.1_Silent_p.I274I	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	274					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TGTGCACGGTGATATAAATGT	0.433													12	43					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518403	113518403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113518403G>A	uc010ljy.1	-	4	2775	c.2744C>T	c.(2743-2745)CCT>CTT	p.P915L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	915					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTTGGAAAAAGGAGAGCTATT	0.403													34	101					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518778	113518778	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113518778C>T	uc010ljy.1	-	4	2400	c.2369G>A	c.(2368-2370)CGA>CAA	p.R790Q		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	790					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TACTGTATCTCGTTGACAAAG	0.398													19	63					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519127	113519127	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113519127C>T	uc010ljy.1	-	4	2051	c.2020G>A	c.(2020-2022)GAG>AAG	p.E674K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	674					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTGATATGCTCTGTTATGTTT	0.373													58	272					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519159	113519159	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113519159C>T	uc010ljy.1	-	4	2019	c.1988G>A	c.(1987-1989)GGA>GAA	p.G663E		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	663					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TCTTGATTTTCCCTGACTTTC	0.363													61	164					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519328	113519328	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113519328C>T	uc010ljy.1	-	4	1850	c.1819G>A	c.(1819-1821)GGC>AGC	p.G607S		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	607					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						AAAGCGCTGCCTTCACTAGTC	0.423													56	165					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519592	113519592	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113519592C>T	uc010ljy.1	-	4	1586	c.1555G>A	c.(1555-1557)GAA>AAA	p.E519K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	519					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						ATTCTTTGTTCTTCATCATCC	0.333													9	31					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519613	113519613	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113519613C>T	uc010ljy.1	-	4	1565	c.1534G>A	c.(1534-1536)GGC>AGC	p.G512S		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	512					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTACCATTGCCATAATAATCT	0.323													10	34					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519690	113519690	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113519690C>T	uc010ljy.1	-	4	1488	c.1457G>A	c.(1456-1458)CGA>CAA	p.R486Q		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	486					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						GAAATCTCTTCGTAAACATCC	0.363													11	52					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519973	113519973	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113519973C>T	uc010ljy.1	-	4	1205	c.1174G>A	c.(1174-1176)GAA>AAA	p.E392K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	392					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						GAATATTTTTCATTGCAGTAA	0.398													66	147					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113520119	113520119	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:113520119G>A	uc010ljy.1	-	4	1059	c.1028C>T	c.(1027-1029)TCA>TTA	p.S343L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	343					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TGGATCTGTTGAAAATGTATT	0.353													50	142					0	0	1	0	0
FOXP2	93986	broad.mit.edu	37	7	114268724	114268724	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:114268724C>T	uc003vhb.2	+	4	762	c.388C>T	c.(388-390)CTG>TTG	p.L130L	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.L155L|FOXP2_uc003vha.2_Silent_p.L38L|FOXP2_uc011kmu.1_Silent_p.L130L|FOXP2_uc011kmv.1_Silent_p.L130L|FOXP2_uc010ljz.1_Silent_p.L38L|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_Silent_p.L130L|FOXP2_uc003vgw.2_Silent_p.L155L|FOXP2_uc003vgx.2_Silent_p.L130L|FOXP2_uc003vhd.2_Silent_p.L130L|FOXP2_uc003vhc.2_Silent_p.L155L	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	130	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						GGCTGTCATGCTGCAGCAGGT	0.488													53	110					0	0	1	0	0
FOXP2	93986	broad.mit.edu	37	7	114292282	114292282	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:114292282G>A	uc003vhb.2	+	9	1493	c.1119G>A	c.(1117-1119)TTG>TTA	p.L373L	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.L398L|FOXP2_uc003vha.2_Silent_p.L281L|FOXP2_uc011kmu.1_Silent_p.L390L|FOXP2_uc011kmv.1_Silent_p.L372L|FOXP2_uc010ljz.1_Silent_p.L281L|FOXP2_uc003vhd.2_Silent_p.L373L|FOXP2_uc003vhc.2_Silent_p.L398L	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	373					camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						AACACGCATTGGATGACCGAA	0.408													11	59					0	0	1	0	0
FOXP2	93986	broad.mit.edu	37	7	114293996	114293996	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:114293996G>A	uc003vhb.2	+	10	1572	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Missense_Mutation_p.E425K|FOXP2_uc003vha.2_Missense_Mutation_p.E308K|FOXP2_uc011kmu.1_Missense_Mutation_p.E417K|FOXP2_uc011kmv.1_Missense_Mutation_p.E399K|FOXP2_uc010ljz.1_Missense_Mutation_p.E308K|FOXP2_uc003vhd.2_Missense_Mutation_p.E400K|FOXP2_uc003vhc.2_Missense_Mutation_p.E425K	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	400	Leucine-zipper.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						TAAAGAACGCGAACGTCTTCA	0.353													43	111					0	0	1	0	0
TFEC	22797	broad.mit.edu	37	7	115590997	115590997	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:115590997C>T	uc003vhj.1	-	6	630	c.446G>A	c.(445-447)AGA>AAA	p.R149K	TFEC_uc003vhk.1_Missense_Mutation_p.R120K|TFEC_uc003vhl.3_Missense_Mutation_p.R120K|TFEC_uc011kmw.1_Missense_Mutation_p.R239K	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	149	Helix-loop-helix motif.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			CCTTCTTCTTCTTTCAACTAT	0.284													14	40					0	0	1	0	0
TFEC	22797	broad.mit.edu	37	7	115614311	115614311	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:115614311C>T	uc003vhj.1	-	3	365	c.181_splice	c.e3-1	p.M61_splice	TFEC_uc003vhk.1_Intron|TFEC_uc003vhl.3_Intron|TFEC_uc011kmw.1_Splice_Site_p.M151_splice	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			CGTCCTCCATCTAGCAAAATA	0.323													20	49					0	0	1	0	0
TES	26136	broad.mit.edu	37	7	115890401	115890401	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:115890401G>A	uc003vho.2	+	4	734	c.553G>A	c.(553-555)GAA>AAA	p.E185K	TES_uc011kmy.1_Intron|TES_uc003vhp.2_Missense_Mutation_p.E176K|uc003vhq.1_5'Flank	NM_015641	NP_056456	Q9UGI8	TES_HUMAN	testin isoform 1	185	PET.				negative regulation of cell proliferation	cytoplasm|focal adhesion|nucleus|protein complex	zinc ion binding				0	Lung NSC(10;0.0137)|all_lung(10;0.0148)	Breast(660;0.0602)	STAD - Stomach adenocarcinoma(10;0.00878)			ATATAAGAGCGAAGCTCTGGG	0.512													26	52					0	0	1	0	0
MET	4233	broad.mit.edu	37	7	116339546	116339546	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:116339546C>T	uc003vij.2	+	2	595	c.408C>T	c.(406-408)GTC>GTT	p.V136V	MET_uc010lkh.2_Silent_p.V136V|MET_uc011knc.1_Silent_p.V136V|MET_uc011knd.1_Silent_p.V136V|MET_uc011kne.1_Silent_p.V136V|MET_uc011knf.1_Silent_p.V136V|MET_uc011kng.1_Silent_p.V136V|MET_uc011knh.1_Silent_p.V136V|MET_uc011kni.1_Silent_p.V136V|MET_uc003vii.1_Silent_p.V155V|MET_uc010lkg.2_Silent_p.V136V|MET_uc011kmz.1_Silent_p.V136V|MET_uc011kna.1_Silent_p.V136V|MET_uc011knb.1_Silent_p.V136V	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	136	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding	p.V136I(1)		upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			GTGGCAGCGTCAACAGAGGGA	0.473			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				17	174					0	0	1	0	0
CAPZA2	830	broad.mit.edu	37	7	116550294	116550294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:116550294C>T	uc003vil.2	+	7	617	c.514C>T	c.(514-516)CGT>TGT	p.R172C	CAPZA2_uc011knk.1_RNA	NM_006136	NP_006127	P47755	CAZA2_HUMAN	capping protein (actin filament) muscle Z-line,	172					actin cytoskeleton organization|actin filament capping|blood coagulation|cellular component movement|innate immune response|protein complex assembly	cytosol|extracellular region|F-actin capping protein complex	actin binding				0	all_cancers(3;8.53e-08)|all_epithelial(6;7.79e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)		GBM - Glioblastoma multiforme(2;5.01e-06)|STAD - Stomach adenocarcinoma(10;0.000512)|all cancers(2;0.00326)			AAGGAATGGTCGTTGGAGGTC	0.318													23	45					0	0	1	0	0
ST7	7982	broad.mit.edu	37	7	116862069	116862069	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:116862069C>T	uc003vin.2	+	15	1805	c.1591C>T	c.(1591-1593)CTC>TTC	p.L531F	ST7_uc011knl.1_Missense_Mutation_p.L508F|ST7_uc003vio.2_Missense_Mutation_p.L508F|ST7_uc003viq.2_Missense_Mutation_p.L485F|ST7_uc011knm.1_Missense_Mutation_p.L488F|ST7_uc003vir.2_Missense_Mutation_p.L451F|ST7_uc011knn.1_Intron	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	531	Helical; (Potential).					integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CATGCTGGCCCTCCTGACACA	0.507													27	92					0	0	1	0	0
WNT2	7472	broad.mit.edu	37	7	116955341	116955341	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:116955341G>A	uc003viz.2	-	3	672	c.372C>T	c.(370-372)ACC>ACT	p.T124T	WNT2_uc003vja.2_Intron	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	124					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		TACAGGCCCTGGTGATGGCAA	0.473													17	83					0	0	1	0	0
WNT2	7472	broad.mit.edu	37	7	116960640	116960640	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:116960640A>T	uc003viz.2	-	2	591	c.291T>A	c.(289-291)TTT>TTA	p.F97L	WNT2_uc003vja.2_Missense_Mutation_p.W23R	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	97					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		GGACCCTGCCAAAAAGGCTGT	0.577													5	17					0	0	1	0	0
WNT2	7472	broad.mit.edu	37	7	116960807	116960807	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:116960807C>T	uc003viz.2	-	2	424	c.124G>A	c.(124-126)GAT>AAT	p.D42N	WNT2_uc003vja.2_5'UTR	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	42					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		GGCACATTATCGCACATCACC	0.592													3	23					0	0	1	0	0
ASZ1	136991	broad.mit.edu	37	7	117021086	117021086	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117021086C>T	uc003vjb.2	-	9	987	c.924G>A	c.(922-924)ATG>ATA	p.M308I	ASZ1_uc011kno.1_Missense_Mutation_p.M308I|ASZ1_uc011knp.1_Missense_Mutation_p.M100I	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	308	SAM.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			CATCTTCCCTCATGGTCAAAA	0.308													48	240					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117171115	117171115	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117171115C>T	uc003vjd.2	+	4	568	c.436C>T	c.(436-438)CAT>TAT	p.H146Y	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	146	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTTTGGCCTTCATCACATTGG	0.418									Cystic_Fibrosis				8	56					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117232120	117232120	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117232120C>T	uc003vjd.2	+	14	2031	c.1899C>T	c.(1897-1899)CTC>CTT	p.L633L	CFTR_uc011knq.1_Silent_p.L39L	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	633	Cytoplasmic (Potential).|ABC transporter 1.		L -> P (in CF).		respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTTCAGAACTCCAAAATCTAC	0.348									Cystic_Fibrosis				40	93					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117232171	117232171	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117232171C>T	uc003vjd.2	+	14	2082	c.1950C>T	c.(1948-1950)TTC>TTT	p.F650F	CFTR_uc011knq.1_Silent_p.F56F	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	650	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	GTGATTCTTTCGACCAATTTA	0.383									Cystic_Fibrosis				14	92					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117235007	117235007	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117235007G>A	uc003vjd.2	+	15	2646	c.2514G>A	c.(2512-2514)GAG>GAA	p.E838E	CFTR_uc011knq.1_Silent_p.E244E	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	838	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	ATGATATGGAGAGCATACCAG	0.333									Cystic_Fibrosis				9	46					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117243663	117243663	+	Missense_Mutation	SNP	C	T	T	rs121909034	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117243663C>T	uc003vjd.2	+	17	2867	c.2735C>T	c.(2734-2736)TCG>TTG	p.S912L	CFTR_uc011knq.1_Missense_Mutation_p.S318L	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	912	Helical; Name=8; (Potential).|ABC transmembrane type-1 2.		S -> L.		respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AGCACCAGTTCGTATTATGTG	0.418									Cystic_Fibrosis				9	109					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117250683	117250683	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117250683C>T	uc003vjd.2	+	19	3231	c.3099C>T	c.(3097-3099)TTC>TTT	p.F1033F	CFTR_uc011knq.1_Silent_p.F439F	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1033	Helical; Name=10; (Potential).|ABC transmembrane type-1 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	GAGCATATTTCCTCCAAACCT	0.388									Cystic_Fibrosis				6	65					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117251691	117251691	+	Missense_Mutation	SNP	C	T	T	rs78194216		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117251691C>T	uc003vjd.2	+	20	3328	c.3196C>T	c.(3196-3198)CGT>TGT	p.R1066C	CFTR_uc011knq.1_Missense_Mutation_p.R472C	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1066	Cytoplasmic (Potential).|ABC transmembrane type-1 2.		R -> H (in CF).|R -> L (in CF).|R -> C (in CF).		respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	ATGGACACTTCGTGCCTTCGG	0.413									Cystic_Fibrosis				15	34					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117292939	117292939	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117292939C>T	uc003vjd.2	+	24	4049	c.3917C>T	c.(3916-3918)CCC>CTC	p.P1306L	CFTR_uc011knq.1_Missense_Mutation_p.P712L	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1306	Cytoplasmic (Potential).|ABC transporter 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AACTTGGATCCCTATGAACAG	0.299									Cystic_Fibrosis				8	95					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117307098	117307098	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117307098C>T	uc003vjd.2	+	27	4511	c.4379C>T	c.(4378-4380)TCT>TTT	p.S1460F	CFTR_uc011knq.1_Missense_Mutation_p.S866F	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1460	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AAGTGCAAGTCTAAGCCCCAG	0.512									Cystic_Fibrosis				13	49					0	0	1	0	0
ANKRD7	56311	broad.mit.edu	37	7	117874902	117874902	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117874902G>A	uc003vji.2	+	3	615	c.442G>A	c.(442-444)GAA>AAA	p.E148K		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	148	ANK 3.				male gonad development						0						GCTTGAATACGAAGCTGATCT	0.333													10	45					0	0	1	0	0
ANKRD7	56311	broad.mit.edu	37	7	117876926	117876926	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:117876926G>A	uc003vji.2	+	5	831	c.658G>A	c.(658-660)GAA>AAA	p.E220K		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	220					male gonad development						0						ATTATGTTACGAAGGTATTGT	0.393													73	210					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	119914839	119914839	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:119914839C>T	uc003vjj.1	+	1	1118	c.153C>T	c.(151-153)CGC>CGT	p.R51R		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	51	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GTGGCACCCGCTTCCAGACGT	0.572													17	291					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	119915014	119915014	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:119915014G>A	uc003vjj.1	+	1	1293	c.328G>A	c.(328-330)GAG>AAG	p.E110K		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	110	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TCCTCGCCACGAGTGCATCTC	0.527													53	199					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	119915242	119915242	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:119915242G>A	uc003vjj.1	+	1	1521	c.556G>A	c.(556-558)GTG>ATG	p.V186M		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	186	Helical; Name=Segment S1; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GATGGCCCTGGTGTTCTACTA	0.577													12	55					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	119915289	119915289	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:119915289G>A	uc003vjj.1	+	1	1568	c.603G>A	c.(601-603)GCG>GCA	p.A201A		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	201	Helical; Name=Segment S1; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CTGTCATCGCGAATGTGGTGG	0.572													8	68					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	119915400	119915400	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:119915400G>A	uc003vjj.1	+	1	1679	c.714G>A	c.(712-714)ATG>ATA	p.M238I		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	238	Helical; Name=Segment S2; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CCTGCGTCATGATCTTCACAG	0.542													11	44					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	119915535	119915535	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:119915535G>A	uc003vjj.1	+	1	1814	c.849G>A	c.(847-849)GAG>GAA	p.E283E		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	283					regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CAGACAATGAGGACGTCAGCG	0.537													17	38					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	119915564	119915564	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:119915564G>A	uc003vjj.1	+	1	1843	c.878G>A	c.(877-879)CGA>CAA	p.R293Q		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	293	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GTCACACTCCGAGTCTTCCGG	0.527													14	31					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	120373013	120373013	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120373013C>T	uc003vjj.1	+	2	2137	c.1172C>T	c.(1171-1173)TCG>TTG	p.S391L		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	391	Helical; Name=Segment S6; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TCTATCTGTTCGCTGAGTGGG	0.418													25	74					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	120385964	120385964	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120385964G>A	uc003vjj.1	+	5	2563	c.1598G>A	c.(1597-1599)CGA>CAA	p.R533Q		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	533	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding	p.R533*(1)		ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TGTTCACGACGACACAAAAAA	0.448													35	84					0	0	1	0	0
TSPAN12	23554	broad.mit.edu	37	7	120428761	120428761	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120428761G>A	uc003vjk.2	-	8	1177	c.803C>T	c.(802-804)TCT>TTT	p.S268F	TSPAN12_uc010lkj.2_Missense_Mutation_p.S141F	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	268	Cytoplasmic (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					CAGGTGCTGAGAGTTGTCATT	0.453													56	112					0	0	1	0	0
TSPAN12	23554	broad.mit.edu	37	7	120428804	120428804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120428804C>T	uc003vjk.2	-	8	1134	c.760G>A	c.(760-762)GAG>AAG	p.E254K	TSPAN12_uc010lkj.2_Missense_Mutation_p.E127K	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	254	Cytoplasmic (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					GTCCCCGGCTCCCTTCTATCA	0.483													29	81					0	0	1	0	0
ING3	54556	broad.mit.edu	37	7	120608053	120608053	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120608053C>T	uc003vjn.2	+	8	756	c.622C>T	c.(622-624)CTG>TTG	p.L208L	ING3_uc003vjo.2_5'UTR|ING3_uc003vjp.2_Silent_p.L208L|ING3_uc011kns.1_Silent_p.L193L	NM_019071	NP_061944	Q9NXR8	ING3_HUMAN	inhibitor of growth family, member 3 isoform 1	208					histone H2A acetylation|histone H4 acetylation|positive regulation of apoptosis|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Piccolo NuA4 histone acetyltransferase complex	zinc ion binding			ovary(1)	1	all_neural(327;0.117)					CTCCCAACCTCTGGGATCCTA	0.428													25	55					0	0	1	0	0
ING3	54556	broad.mit.edu	37	7	120609222	120609222	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120609222C>T	uc003vjn.2	+	9	1006	c.872C>T	c.(871-873)TCA>TTA	p.S291L	ING3_uc003vjo.2_Missense_Mutation_p.S65L|ING3_uc003vjp.2_Missense_Mutation_p.S291L|ING3_uc011kns.1_Missense_Mutation_p.S276L	NM_019071	NP_061944	Q9NXR8	ING3_HUMAN	inhibitor of growth family, member 3 isoform 1	291					histone H2A acetylation|histone H4 acetylation|positive regulation of apoptosis|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Piccolo NuA4 histone acetyltransferase complex	zinc ion binding			ovary(1)	1	all_neural(327;0.117)					AATGCCAGTTCATCAGCAGCC	0.418													24	69					0	0	1	0	0
C7orf58	79974	broad.mit.edu	37	7	120655881	120655881	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120655881G>A	uc003vjq.3	+	3	859	c.412G>A	c.(412-414)GGG>AGG	p.G138R	C7orf58_uc003vjr.1_Missense_Mutation_p.G138R|C7orf58_uc003vjs.3_Missense_Mutation_p.G138R	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	138						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TGCTGGCCTAGGGCCGGGGCT	0.448													10	25					0	0	1	0	0
C7orf58	79974	broad.mit.edu	37	7	120740003	120740003	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120740003C>T	uc003vjq.3	+	7	1220	c.773C>T	c.(772-774)CCA>CTA	p.P258L	C7orf58_uc003vjr.1_Missense_Mutation_p.P258L|C7orf58_uc003vjs.3_Missense_Mutation_p.P258L|C7orf58_uc003vjt.3_Missense_Mutation_p.P38L|C7orf58_uc010lkk.1_Missense_Mutation_p.P38L	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	258						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GTCCTTGCTCCACATGAAACA	0.383													18	76					0	0	1	0	0
C7orf58	79974	broad.mit.edu	37	7	120906771	120906771	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120906771C>T	uc003vjq.3	+	20	2989	c.2542C>T	c.(2542-2544)CTA>TTA	p.L848L		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	848						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					ATCACGTCCCCTAGAGAATAC	0.403													29	97					0	0	1	0	0
C7orf58	79974	broad.mit.edu	37	7	120935629	120935629	+	Missense_Mutation	SNP	C	T	T	rs147434701	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120935629C>T	uc003vjq.3	+	23	3451	c.3004C>T	c.(3004-3006)CAT>TAT	p.H1002Y		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	1002						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					ATCGCCATATCATGTCAGAGG	0.378													45	104					0	0	1	0	0
WNT16	51384	broad.mit.edu	37	7	120979048	120979048	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:120979048G>A	uc003vjw.2	+	4	1004	c.747G>A	c.(745-747)TTG>TTA	p.L249L	WNT16_uc003vjv.2_Silent_p.L239L|WNT16_uc010lkl.2_Silent_p.L33L	NM_057168	NP_476509	Q9UBV4	WNT16_HUMAN	wingless-type MMTV integration site family,	249					anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|keratinocyte differentiation|keratinocyte proliferation|negative regulation of cell death|optic cup formation involved in camera-type eye development|oxidative stress-induced premature senescence|positive regulation of gene expression|positive regulation of JNK cascade|positive regulation of phosphatidylinositol 3-kinase cascade|replicative senescence|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			lung(2)|ovary(2)|large_intestine(1)	5	all_neural(327;0.117)					GCCATTTGTTGAAGGATAAAT	0.413													22	44					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121650650	121650650	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:121650650C>T	uc003vjy.2	+	12	1945	c.1550C>T	c.(1549-1551)TCC>TTC	p.S517F	PTPRZ1_uc003vjz.2_Missense_Mutation_p.S517F|PTPRZ1_uc011knt.1_5'UTR	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	517	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						AAAGATATTTCCTTGACTTCT	0.408													31	80					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121652070	121652070	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:121652070C>T	uc003vjy.2	+	12	3365	c.2970C>T	c.(2968-2970)CTC>CTT	p.L990L	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	990	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CTCATGCCCTCTCTGGTGATG	0.458													59	129					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121652734	121652734	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:121652734C>T	uc003vjy.2	+	12	4029	c.3634C>T	c.(3634-3636)CCC>TCC	p.P1212S	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1212	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						GGTTGAAACCCCCAAAGTTGA	0.388													56	172					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121693987	121693987	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:121693987C>T	uc003vjy.2	+	26	6671	c.6276C>T	c.(6274-6276)TTC>TTT	p.F2092F	PTPRZ1_uc003vjz.2_Silent_p.F1225F|PTPRZ1_uc011knt.1_Silent_p.F682F	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	2092	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						GCAATGAATTCATCATTACCC	0.413													63	154					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121694075	121694076	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:121694075_121694076CC>TT	uc003vjy.2	+	26	6759_6760	c.6364_6365CC>TT	c.(6364-6366)CCT>TTT	p.P2122F	PTPRZ1_uc003vjz.2_Missense_Mutation_p.P1255F|PTPRZ1_uc011knt.1_Missense_Mutation_p.P712F	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	2122	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						GGTTATGATTCCTGATGGCCAA	0.431													54	123					0	0	1	0	0
FEZF1	389549	broad.mit.edu	37	7	121942288	121942288	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:121942288C>T	uc003vkd.2	-	4	1265	c.1191G>A	c.(1189-1191)AAG>AAA	p.K397K	FEZF1_uc003vkc.2_Silent_p.K347K|uc010lko.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	397					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						TGAAAGGCTTCTTGTCGTTGT	0.562													50	135					0	0	1	0	0
FEZF1	389549	broad.mit.edu	37	7	121944316	121944316	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:121944316C>T	uc003vkd.2	-	1	250	c.176G>A	c.(175-177)GGG>GAG	p.G59E	FEZF1_uc003vkc.2_Missense_Mutation_p.G59E|uc010lko.1_RNA|uc003vkf.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	59					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						CTTGGGTTCCCCCTTGGGTAA	0.617													36	109					0	0	1	0	0
FEZF1	389549	broad.mit.edu	37	7	121944331	121944331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:121944331C>T	uc003vkd.2	-	1	235	c.161G>A	c.(160-162)GGA>GAA	p.G54E	FEZF1_uc003vkc.2_Missense_Mutation_p.G54E|uc010lko.1_Intron|uc003vkf.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	54					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						GGGTAAGGCTCCCTGCAGGAA	0.597													45	117					0	0	1	0	0
CADPS2	93664	broad.mit.edu	37	7	121960374	121960374	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:121960374G>A	uc010lkp.2	-	29	3899	c.3736C>T	c.(3736-3738)CGA>TGA	p.R1246*	CADPS2_uc011knx.1_Nonsense_Mutation_p.R621*|CADPS2_uc003vkg.3_Nonsense_Mutation_p.R900*|CADPS2_uc010lkq.2_Nonsense_Mutation_p.R1205*	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	1246					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						CCCTGCAATCGAAAGTCCCTG	0.398													57	144					0	0	1	0	0
CADPS2	93664	broad.mit.edu	37	7	122114506	122114506	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122114506G>A	uc010lkp.2	-	12	2090	c.1927C>T	c.(1927-1929)CAT>TAT	p.H643Y	CADPS2_uc011knx.1_Missense_Mutation_p.H14Y|CADPS2_uc003vkg.3_Missense_Mutation_p.H340Y|CADPS2_uc010lkq.2_Missense_Mutation_p.H640Y	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	643					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						AGGAAGGCATGATCAAGCTTG	0.393													25	46					0	0	1	0	0
CADPS2	93664	broad.mit.edu	37	7	122261582	122261582	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122261582C>T	uc010lkp.2	-	5	1220	c.1057G>A	c.(1057-1059)GAG>AAG	p.E353K	CADPS2_uc003vkg.3_Missense_Mutation_p.E53K|CADPS2_uc010lkq.2_Missense_Mutation_p.E353K	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	353					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						AGCTGAATCTCATTCTCATCT	0.393													34	104					0	0	1	0	0
RNF133	168433	broad.mit.edu	37	7	122338165	122338165	+	Missense_Mutation	SNP	G	A	A	rs113296018	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122338165G>A	uc003vkj.1	-	1	1044	c.808C>T	c.(808-810)CGT>TGT	p.R270C	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	270	RING-type; atypical.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						GTCAGAATACGAACTATGTCA	0.388													41	104					0	0	1	0	0
CADPS2	93664	broad.mit.edu	37	7	122377072	122377072	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122377072G>A	uc010lkp.2	-	2	553	c.390C>T	c.(388-390)CTC>CTT	p.L130L	CADPS2_uc010lkq.2_Silent_p.L130L	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	130					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						TTTCCCCATTGAGGAAGGCCT	0.398													17	29					0	0	1	0	0
SLC13A1	6561	broad.mit.edu	37	7	122757604	122757604	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122757604G>A	uc003vkm.2	-	14	1596	c.1571C>T	c.(1570-1572)TCA>TTA	p.S524L	SLC13A1_uc010lks.2_Missense_Mutation_p.S400L	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	524	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	GAATGCAAATGAAGTACACAG	0.368													30	67					0	0	1	0	0
SLC13A1	6561	broad.mit.edu	37	7	122759247	122759247	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122759247G>A	uc003vkm.2	-	13	1425	c.1400C>T	c.(1399-1401)TCA>TTA	p.S467L	SLC13A1_uc010lks.2_Missense_Mutation_p.S343L	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	467	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	TGCTGGTAATGAACCCAGAGG	0.343													16	58					0	0	1	0	0
SLC13A1	6561	broad.mit.edu	37	7	122769437	122769437	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122769437C>T	uc003vkm.2	-	9	1056	c.1031G>A	c.(1030-1032)AGG>AAG	p.R344K	SLC13A1_uc010lks.2_Missense_Mutation_p.R220K	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	344						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	tttgtCTTACCTTATTGGCCC	0.289													13	61					0	0	1	0	0
SLC13A1	6561	broad.mit.edu	37	7	122774533	122774533	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122774533G>A	uc003vkm.2	-	8	888	c.863C>T	c.(862-864)TCC>TTC	p.S288F	SLC13A1_uc010lks.2_Missense_Mutation_p.S164F	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	288						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	AGCTGGGAAGGAAAACGTAAA	0.433													21	58					0	0	1	0	0
SLC13A1	6561	broad.mit.edu	37	7	122787290	122787290	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122787290G>A	uc003vkm.2	-	7	760	c.735C>T	c.(733-735)GCC>GCT	p.A245A	SLC13A1_uc010lks.2_Silent_p.A121A	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	245	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	TAGAAGAGTAGGCAATGCACA	0.413													9	32					0	0	1	0	0
SLC13A1	6561	broad.mit.edu	37	7	122809232	122809232	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122809232C>T	uc003vkm.2	-	4	548	c.523G>A	c.(523-525)GGA>AGA	p.G175R	SLC13A1_uc010lks.2_5'UTR	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	175						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	TTGGTTGATCCGTTGAAGTAA	0.473													14	45					0	0	1	0	0
SLC13A1	6561	broad.mit.edu	37	7	122811931	122811931	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:122811931G>A	uc003vkm.2	-	3	281	c.256C>T	c.(256-258)CAC>TAC	p.H86Y	SLC13A1_uc010lks.2_5'UTR	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	86	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	AGCAGTAAGTGAAAATCCTTG	0.338													26	79					0	0	1	0	0
IQUB	154865	broad.mit.edu	37	7	123152144	123152144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:123152144G>A	uc003vkn.2	-	2	828	c.251C>T	c.(250-252)TCA>TTA	p.S84L	IQUB_uc003vko.2_Missense_Mutation_p.S84L|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Missense_Mutation_p.S84L|IQUB_uc003vkq.2_Missense_Mutation_p.S84L	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	84										ovary(3)|large_intestine(1)	4						TTGTCTTGGTGATATAACCTC	0.398													17	194					0	0	1	0	0
ASB15	142685	broad.mit.edu	37	7	123264747	123264747	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:123264747C>T	uc003vku.1	+	8	868	c.576C>T	c.(574-576)ATC>ATT	p.I192I	ASB15_uc003vkv.1_Silent_p.I192I|ASB15_uc003vkw.1_Silent_p.I192I	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	192	ANK 3.				intracellular signal transduction					skin(2)|lung(1)	3						GAAAAGATATCGTAGCTCTGC	0.517											OREG0018282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	84					0	0	1	0	0
ASB15	142685	broad.mit.edu	37	7	123267179	123267179	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:123267179C>T	uc003vku.1	+	9	1005	c.713C>T	c.(712-714)GCT>GTT	p.A238V	ASB15_uc003vkv.1_Missense_Mutation_p.A238V|ASB15_uc003vkw.1_Missense_Mutation_p.A238V	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	238	ANK 4.				intracellular signal transduction					skin(2)|lung(1)	3						GATGTGCTTGCTTTGGCGGAT	0.473													20	107					0	0	1	0	0
LMOD2	442721	broad.mit.edu	37	7	123302375	123302375	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:123302375C>T	uc003vky.2	+	2	892	c.735C>T	c.(733-735)TTC>TTT	p.F245F		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	245						cytoskeleton	actin binding|tropomyosin binding				0						TGAAGACGTTCAGTCTGGCCA	0.498													7	47					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123593738	123593738	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:123593738C>T	uc003vld.2	+	4	516	c.114C>T	c.(112-114)TTC>TTT	p.F38F	SPAM1_uc003vle.2_Silent_p.F38F|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Silent_p.F38F|SPAM1_uc010lku.2_Silent_p.F38F	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	38					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	CTCTGAATTTCAGAGCACCTC	0.413													6	58					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123594271	123594271	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:123594271G>A	uc003vld.2	+	4	1049	c.647G>A	c.(646-648)TGG>TAG	p.W216*	SPAM1_uc003vle.2_Nonsense_Mutation_p.W216*|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Nonsense_Mutation_p.W216*|SPAM1_uc010lku.2_Nonsense_Mutation_p.W216*	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	216					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	AATCACTTGTGGGGTTATTAT	0.373													34	104					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123594435	123594435	+	Missense_Mutation	SNP	C	T	T	rs141109529		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:123594435C>T	uc003vld.2	+	4	1213	c.811C>T	c.(811-813)CCT>TCT	p.P271S	SPAM1_uc003vle.2_Missense_Mutation_p.P271S|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.P271S|SPAM1_uc010lku.2_Missense_Mutation_p.P271S	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	271					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TCAGCAGTCTCCTGTAGCTGC	0.413													40	110					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123599966	123599966	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:123599966C>T	uc003vld.2	+	6	1875	c.1473C>T	c.(1471-1473)GCC>GCT	p.A491A	SPAM1_uc003vle.2_Silent_p.A491A|SPAM1_uc011koa.1_Silent_p.A147A|SPAM1_uc003vlf.3_Silent_p.A491A|SPAM1_uc010lku.2_Silent_p.A491A	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	491					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	CACTATCTGCCACAATGTTCA	0.373													33	74					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123599975	123599975	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:123599975C>T	uc003vld.2	+	6	1884	c.1482C>T	c.(1480-1482)TTC>TTT	p.F494F	SPAM1_uc003vle.2_Silent_p.F494F|SPAM1_uc011koa.1_Silent_p.F150F|SPAM1_uc003vlf.3_Silent_p.F494F|SPAM1_uc010lku.2_Silent_p.F494F	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	494					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	CCACAATGTTCATTGTTAGTA	0.368													30	76					0	0	1	0	0
GPR37	2861	broad.mit.edu	37	7	124404084	124404085	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:124404084_124404085GG>AA	uc003vli.2	-	1	1597_1598	c.946_947CC>TT	c.(946-948)CCG>TTG	p.P316L		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	316	Helical; Name=2; (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GATGACCAGCGGAAGGCAGAAG	0.535													63	134					0	0	1	0	0
GPR37	2861	broad.mit.edu	37	7	124404283	124404283	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:124404283G>A	uc003vli.2	-	1	1399	c.748C>T	c.(748-750)CCC>TCC	p.P250S		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	250	Extracellular (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GGGTAGAAGGGGTTCTTCAGT	0.622													16	47					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126079218	126079218	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:126079218G>A	uc003vlr.2	-	10	2993	c.2682C>T	c.(2680-2682)TCC>TCT	p.S894S	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_3'UTR|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	894	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TCTTGGTAGAGGAAGCTGTTA	0.289										HNSCC(24;0.065)			55	122					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173189	126173189	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:126173189G>A	uc003vlr.2	-	8	2558	c.2247C>T	c.(2245-2247)CTC>CTT	p.L749L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.L749L|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	749	Helical; Name=5; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GTGAACAAATGAGTGAGAGAT	0.463										HNSCC(24;0.065)			9	41					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173416	126173416	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:126173416G>A	uc003vlr.2	-	8	2331	c.2020C>T	c.(2020-2022)CAC>TAC	p.H674Y	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.H674Y|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	674	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AATATTCGGTGGATACGGTTT	0.502										HNSCC(24;0.065)			23	87					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126410110	126410110	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:126410110C>T	uc003vlr.2	-	6	1477	c.1166G>A	c.(1165-1167)CGA>CAA	p.R389Q	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.R389Q|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.R110Q	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	389	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CCGAGCAATTCGCTCCAGCCC	0.383										HNSCC(24;0.065)			7	17					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126882788	126882788	+	Silent	SNP	G	A	A	rs146190169	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:126882788G>A	uc003vlr.2	-	1	782	c.471C>T	c.(469-471)TCC>TCT	p.S157S	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.S157S|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	157	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TGATGGACACGGAGCTTGCTG	0.428										HNSCC(24;0.065)			13	113					0	0	1	0	0
FSCN3	29999	broad.mit.edu	37	7	127235596	127235596	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:127235596C>T	uc003vmd.1	+	2	599	c.380C>T	c.(379-381)TCC>TTC	p.S127F	FSCN3_uc003vmc.1_Missense_Mutation_p.S82F|FSCN3_uc011kog.1_RNA|FSCN3_uc011koh.1_5'UTR|FSCN3_uc010llc.1_Missense_Mutation_p.S127F	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	127						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						TTTTGCACTTCCCACGTCCTC	0.572													16	42					0	0	1	0	0
FSCN3	29999	broad.mit.edu	37	7	127239494	127239494	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:127239494C>T	uc003vmd.1	+	5	1399	c.1180C>T	c.(1180-1182)CGT>TGT	p.R394C	FSCN3_uc011koh.1_Missense_Mutation_p.R260C|FSCN3_uc010llc.1_Missense_Mutation_p.R394C	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	394						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						ATTGCGAGGTCGTTATGGCTA	0.507													43	72					0	0	1	0	0
PAX4	5078	broad.mit.edu	37	7	127253129	127253129	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:127253129C>T	uc010lld.1	-	6	844	c.638G>A	c.(637-639)AGA>AAA	p.R213K	PAX4_uc003vmf.2_Missense_Mutation_p.R211K|PAX4_uc003vmg.1_Missense_Mutation_p.R213K|PAX4_uc003vmh.2_Missense_Mutation_p.R211K	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	221	Homeobox.				cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTTGGCTCTTCTGTTGGAAAA	0.507													12	61					0	0	1	0	0
PAX4	5078	broad.mit.edu	37	7	127253907	127253908	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:127253907_127253908GG>AA	uc010lld.1	-	4	646_647	c.440_441CC>TT	c.(439-441)CCC>CTT	p.P147L	PAX4_uc003vmf.2_Missense_Mutation_p.P145L|PAX4_uc003vmg.1_Missense_Mutation_p.P147L|PAX4_uc003vmh.2_Missense_Mutation_p.P145L	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	155					cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGCCACTATGGGGAGTGAGGAC	0.564													13	51					0	0	1	0	0
SND1	27044	broad.mit.edu	37	7	127343298	127343298	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:127343298C>T	uc003vmi.2	+	7	987	c.761C>T	c.(760-762)TCG>TTG	p.S254L		NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	254	TNase-like 2.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						TTCACTGAGTCGCGACTGCTT	0.493													37	75					0	0	1	0	0
LRRC4	64101	broad.mit.edu	37	7	127668746	127668746	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:127668746C>T	uc003vmk.2	-	2	2085	c.1948G>A	c.(1948-1950)GAA>AAA	p.E650K	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	650	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		ATTTGAGTTTCCTGTACCTTG	0.438													35	89					0	0	1	0	0
RBM28	55131	broad.mit.edu	37	7	127950857	127950857	+	Missense_Mutation	SNP	T	C	C	rs148028531	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:127950857T>C	uc003vmp.2	-	19	2388	c.2273A>G	c.(2272-2274)GAT>GGT	p.D758G	RBM28_uc003vmo.2_Missense_Mutation_p.D300G|RBM28_uc011koj.1_Missense_Mutation_p.D617G	NM_018077	NP_060547	Q9NW13	RBM28_HUMAN	RNA binding motif protein 28	758					mRNA processing|RNA splicing	Golgi apparatus|nucleolus|spliceosomal complex	nucleotide binding|RNA binding			ovary(2)	2						TCATCAACTATCAAACCATTT	0.502													10	191					0	0	1	0	0
RBM28	55131	broad.mit.edu	37	7	127954827	127954827	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:127954827G>A	uc003vmp.2	-	17	2150	c.2035C>T	c.(2035-2037)CCC>TCC	p.P679S	RBM28_uc003vmo.2_Missense_Mutation_p.P221S|RBM28_uc011koj.1_Missense_Mutation_p.P538S	NM_018077	NP_060547	Q9NW13	RBM28_HUMAN	RNA binding motif protein 28	679					mRNA processing|RNA splicing	Golgi apparatus|nucleolus|spliceosomal complex	nucleotide binding|RNA binding			ovary(2)	2						CTGATTTTGGGGCCTCGGTGT	0.532													79	259					0	0	1	0	0
CALU	813	broad.mit.edu	37	7	128388731	128388731	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128388731C>T	uc003vns.2	+	2	246	c.94C>T	c.(94-96)CCT>TCT	p.P32S	CALU_uc003vnq.2_Missense_Mutation_p.P32S|CALU_uc003vnr.2_Missense_Mutation_p.P32S	NM_001130674	NP_001124146	O43852	CALU_HUMAN	calumenin isoform b precursor	32					platelet activation|platelet degranulation	extracellular region|Golgi apparatus|melanosome|sarcoplasmic reticulum lumen	calcium ion binding|protein binding				0						ACATCATGAGCCTCAGCTCAG	0.468													37	82					0	0	1	0	0
CALU	813	broad.mit.edu	37	7	128399014	128399014	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128399014C>T	uc003vns.2	+	4	657	c.505C>T	c.(505-507)CTC>TTC	p.L169F	CALU_uc003vnq.2_Missense_Mutation_p.L169F|CALU_uc003vnr.2_Missense_Mutation_p.L169F	NM_001130674	NP_001124146	O43852	CALU_HUMAN	calumenin isoform b precursor	169	EF-hand 3.|3; possibly ancestral (Potential).				platelet activation|platelet degranulation	extracellular region|Golgi apparatus|melanosome|sarcoplasmic reticulum lumen	calcium ion binding|protein binding				0						GGATGGAGACCTCATTGCCAC	0.428													84	215					0	0	1	0	0
CCDC136	64753	broad.mit.edu	37	7	128445896	128445896	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128445896G>A	uc003vnv.1	+	7	1397	c.1030G>A	c.(1030-1032)GAG>AAG	p.E344K	CCDC136_uc003vnu.1_Missense_Mutation_p.E382K|CCDC136_uc003vnw.1_Missense_Mutation_p.E344K|CCDC136_uc003vnx.1_Missense_Mutation_p.E160K|CCDC136_uc010llq.1_5'UTR|CCDC136_uc003vny.1_5'Flank	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	344						integral to membrane	protein binding			ovary(2)	2						GCTGCAGAGGGAGCTCAAGTG	0.562													15	28					0	0	1	0	0
CCDC136	64753	broad.mit.edu	37	7	128452782	128452782	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128452782G>A	uc003vnv.1	+	14	2929	c.2562G>A	c.(2560-2562)GTG>GTA	p.V854V	CCDC136_uc003vnu.1_Intron|CCDC136_uc003vnw.1_Intron|CCDC136_uc003vnx.1_Silent_p.V670V|CCDC136_uc010llq.1_Silent_p.V223V|CCDC136_uc003vny.1_Silent_p.V464V	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	854						integral to membrane	protein binding			ovary(2)	2						AAATGGTTGTGAAAGTGCTGA	0.577													16	34					0	0	1	0	0
CCDC136	64753	broad.mit.edu	37	7	128454708	128454708	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128454708C>T	uc003vnv.1	+	15	3147	c.2780C>T	c.(2779-2781)ACC>ATC	p.T927I	CCDC136_uc003vnu.1_Intron|CCDC136_uc003vnw.1_Intron|CCDC136_uc003vnx.1_Missense_Mutation_p.T743I|CCDC136_uc010llq.1_Missense_Mutation_p.T296I|CCDC136_uc003vny.1_Intron	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	927	Potential.					integral to membrane	protein binding			ovary(2)	2						GAACTGCAGACCAAGCTGCGG	0.587													12	32					0	0	1	0	0
CCDC136	64753	broad.mit.edu	37	7	128455945	128455945	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128455945C>T	uc003vnv.1	+	16	3690	c.3323C>T	c.(3322-3324)CCC>CTC	p.P1108L	CCDC136_uc003vnu.1_Intron|CCDC136_uc003vnw.1_Intron|CCDC136_uc003vnx.1_Missense_Mutation_p.P924L|CCDC136_uc010llq.1_Missense_Mutation_p.P477L|CCDC136_uc003vny.1_Intron	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	1108	Glu-rich.					integral to membrane	protein binding			ovary(2)	2						CTTGAAAGTCCCGAAGAAAAT	0.343													7	27					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128477589	128477589	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128477589C>T	uc003vnz.3	+	4	1046	c.837C>T	c.(835-837)ATC>ATT	p.I279I	FLNC_uc003voa.3_Silent_p.I279I	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	279	Filamin 1.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						AGAAAGCCATCGCCTATGGGC	0.597													23	75					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128478853	128478853	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128478853G>A	uc003vnz.3	+	8	1616	c.1407G>A	c.(1405-1407)TCG>TCA	p.S469S	FLNC_uc003voa.3_Silent_p.S469S	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	469	Filamin 3.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TCCATGTGTCGGAAGGTAAGG	0.637													30	60					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128480613	128480613	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128480613G>A	uc003vnz.3	+	10	1770	c.1561G>A	c.(1561-1563)GAG>AAG	p.E521K	FLNC_uc003voa.3_Missense_Mutation_p.E521K	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	521	Filamin 3.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGGCACAGAGGAGCCAGTGAA	0.602													28	58					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128482972	128482973	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128482972_128482973GG>AA	uc003vnz.3	+	16	2723_2724	c.2514_2515GG>AA	c.(2512-2517)GCGGGC>GCAAGC	p.G839S	FLNC_uc003voa.3_Missense_Mutation_p.G839S	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	839	Filamin 6.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CACCAGGGGCGGGCCGCTACAC	0.594													5	47					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128483850	128483850	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128483850G>A	uc003vnz.3	+	19	3021	c.2812G>A	c.(2812-2814)GGC>AGC	p.G938S	FLNC_uc003voa.3_Missense_Mutation_p.G938S	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	938	Filamin 7.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TACCCAACAGGGCAACATGGC	0.527													76	100					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128489559	128489559	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128489559C>T	uc003vnz.3	+	30	5335	c.5126C>T	c.(5125-5127)CCC>CTC	p.P1709L	FLNC_uc003voa.3_Missense_Mutation_p.P1709L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1709	Filamin 15.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TACACAGCGCCCGAGCCGGGC	0.582													25	42					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128491627	128491627	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128491627C>T	uc003vnz.3	+	35	5996	c.5787C>T	c.(5785-5787)ATC>ATT	p.I1929I	FLNC_uc003voa.3_Silent_p.I1896I	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1929	Filamin 17.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						ACAGCATCATCGTGCGCTTCG	0.587													30	76					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128491636	128491636	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128491636C>T	uc003vnz.3	+	35	6005	c.5796C>T	c.(5794-5796)TTC>TTT	p.F1932F	FLNC_uc003voa.3_Silent_p.F1899F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1932	Filamin 17.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TCGTGCGCTTCGATGACAAGC	0.577													29	70					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128492726	128492726	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128492726G>A	uc003vnz.3	+	36	6133	c.5924G>A	c.(5923-5925)AGC>AAC	p.S1975N	FLNC_uc003voa.3_Missense_Mutation_p.S1942N	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1975	Filamin 18.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						AGTGATCTGAGCCAGCTGACC	0.647													37	60					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128496919	128496919	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128496919C>T	uc003vnz.3	+	45	7714	c.7505C>T	c.(7504-7506)GCT>GTT	p.A2502V	FLNC_uc003voa.3_Missense_Mutation_p.A2469V	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2502	Interaction with INPPL1.|Filamin 23.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CAGAGCCAGGCTGGGGACCCA	0.627													8	43					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128498132	128498132	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128498132C>T	uc003vnz.3	+	47	8060	c.7851C>T	c.(7849-7851)TCC>TCT	p.S2617S	FLNC_uc003voa.3_Silent_p.S2584S	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2617	Interaction with INPPL1.|Self-association site, tail (By similarity).|Hinge 2.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TGACCAAGTCCTCCTCAAGCC	0.637													7	23					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128498536	128498536	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128498536G>A	uc003vnz.3	+	48	8346	c.8137G>A	c.(8137-8139)GAA>AAA	p.E2713K	FLNC_uc003voa.3_Missense_Mutation_p.E2680K	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2713	Interaction with INPPL1.|Filamin 24.|Self-association site, tail (By similarity).				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GTGGGGTGACGAAAGTGTCCC	0.502													20	33					0	0	1	0	0
ATP6V1F	9296	broad.mit.edu	37	7	128503058	128503058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128503058C>T	uc003voc.1	+	1	161	c.100C>T	c.(100-102)CCC>TCC	p.P34S	KCP_uc003vob.1_RNA	NM_004231	NP_004222	Q16864	VATF_HUMAN	ATPase, H+ transporting, lysosomal 14kD, V1	34					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|membrane fraction|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATPase activity, uncoupled|hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding|proton-transporting ATPase activity, rotational mechanism			ovary(1)	1						GAACCGCCATCCCAATTTCCT	0.582											OREG0018299	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	78					0	0	1	0	0
TNPO3	23534	broad.mit.edu	37	7	128615974	128615975	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128615974_128615975GG>AT	uc003vol.1	-	17	2450_2451	c.2076_2077CC>AT	c.(2074-2079)TACCAC>TAATAC	p.692_693YH>*Y	TNPO3_uc010llx.1_Nonsense_Mutation_p.103_104YH>*Y|TNPO3_uc003vom.1_Nonsense_Mutation_p.626_627YH>*Y|TNPO3_uc010lly.1_Nonsense_Mutation_p.726_727YH>*Y|TNPO3_uc010llz.1_Nonsense_Mutation_p.628_629YH>*Y	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	692_693					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						TGATGTACGTGGTACACATTCA	0.455													19	49					0	0	1	0	0
LOC407835	407835	broad.mit.edu	37	7	128766894	128766894	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128766894C>G	uc003voo.2	+	1	570	c.323C>G	c.(322-324)CCG>CGG	p.P108R		NR_002144				SubName: Full=cDNA FLJ35806 fis, clone TESTI2005987, highly similar to Dual specificity mitogen-activated protein kinase kinase 2 (EC 2.7.12.2); SubName: Full=Mitogen-activated protein kinase kinase 2, isoform CRA_d;												0						GAGATCAAGCCGGCCATCCGG	0.617													15	32					0	0	1	0	0
AHCYL2	23382	broad.mit.edu	37	7	128865045	128865045	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:128865045C>T	uc011kov.1	+	1	182	c.128C>T	c.(127-129)CCC>CTC	p.P43L	AHCYL2_uc003vot.2_Missense_Mutation_p.P43L	NM_015328	NP_056143	Q96HN2	SAHH3_HUMAN	S-adenosylhomocysteine hydrolase-like 2 isoform	43					one-carbon metabolic process		adenosylhomocysteinase activity			ovary(2)	2						GCCATGGCCCCCCCGGCGGGC	0.537													3	1					0	0	1	0	0
FAM40B	57464	broad.mit.edu	37	7	129095170	129095170	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129095170C>T	uc011koy.1	+	8	832	c.792C>T	c.(790-792)TTC>TTT	p.F264F	FAM40B_uc003vow.2_Silent_p.F264F|FAM40B_uc011koz.1_5'Flank	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	264											0						CTCCTCACTTCCCCATAAAGA	0.517													13	167					0	0	1	0	0
FAM40B	57464	broad.mit.edu	37	7	129096476	129096476	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129096476C>T	uc011koy.1	+	9	1071	c.1031C>T	c.(1030-1032)TCT>TTT	p.S344F	FAM40B_uc003vow.2_Missense_Mutation_p.S344F|FAM40B_uc011koz.1_5'Flank	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	344											0						CGCCGTGGCTCTCGAAGGGTA	0.552													14	27					0	0	1	0	0
FAM40B	57464	broad.mit.edu	37	7	129122724	129122724	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129122724C>T	uc011koy.1	+	20	2131	c.2091C>T	c.(2089-2091)GCC>GCT	p.A697A	FAM40B_uc003vow.2_Silent_p.A697A|FAM40B_uc011koz.1_Silent_p.A189A	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	697											0						TAAAGCGGGCCCTCAAGGTCA	0.443													34	90					0	0	1	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129663406	129663406	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129663406G>A	uc003vpi.2	-	8	1205	c.1178C>T	c.(1177-1179)CCA>CTA	p.P393L	ZC3HC1_uc003vph.2_Missense_Mutation_p.P237L|ZC3HC1_uc010lma.2_Intron	NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	393					cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					AGGGCTAGATGGTACCTCCAG	0.607													47	116					0	0	1	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129664305	129664305	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129664305G>A	uc003vpi.2	-	7	845	c.818C>T	c.(817-819)TCG>TTG	p.S273L	ZC3HC1_uc003vph.2_Intron|ZC3HC1_uc010lma.2_Missense_Mutation_p.S160L	NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	273					cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					CATACATTGCGAACATGTTAT	0.468													17	33					0	0	1	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129691083	129691083	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129691083G>A	uc003vpi.2	-	1	151	c.124C>T	c.(124-126)CCG>TCG	p.P42S		NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	42					cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					CCCTCTTCCGGGGCAATCCCC	0.597													42	84					0	0	1	0	0
CPA2	1358	broad.mit.edu	37	7	129909563	129909563	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129909563C>T	uc003vpq.2	+	3	227	c.208C>T	c.(208-210)CCC>TCC	p.P70S	CPA2_uc011kpc.1_Missense_Mutation_p.P70S	NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	70					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					CGTCCGAGTTCCCTTCGTCAA	0.498													17	98					0	0	1	0	0
CPA2	1358	broad.mit.edu	37	7	129915067	129915067	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129915067G>A	uc003vpq.2	+	6	584	c.565G>A	c.(565-567)GCA>ACA	p.A189T	CPA2_uc011kpc.1_Missense_Mutation_p.A189T	NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	189					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					ACAAGCTACGGCACTTTGGAC	0.502													11	45					0	0	1	0	0
CPA2	1358	broad.mit.edu	37	7	129929579	129929579	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129929579C>T	uc003vpq.2	+	11	1271	c.1252C>T	c.(1252-1254)CCC>TCC	p.P418S		NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	418					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					GCGAGACCACCCCTATTAGGG	0.522													28	64					0	0	1	0	0
CPA5	93979	broad.mit.edu	37	7	129986368	129986368	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:129986368C>T	uc010lmd.1	+	4	662	c.42C>T	c.(40-42)TCC>TCT	p.S14S	CPA5_uc003vps.2_Silent_p.S14S|CPA5_uc003vpt.2_Silent_p.S14S|CPA5_uc010lme.1_Silent_p.S14S|CPA5_uc003vpu.1_Silent_p.S14S	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	14					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					CTGGGCCATCCCCCGTGGACA	0.632													25	88					0	0	1	0	0
CPA5	93979	broad.mit.edu	37	7	130007814	130007814	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:130007814G>A	uc010lmd.1	+	13	1726	c.1106G>A	c.(1105-1107)AGC>AAC	p.S369N	CPA5_uc003vps.2_Missense_Mutation_p.S369N|CPA5_uc003vpt.2_Intron|CPA5_uc010lme.1_Missense_Mutation_p.S369N|CPA5_uc003vpu.1_Missense_Mutation_p.S369N|uc003vpv.1_RNA	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	369					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					ATTTTTGGCAGCATCAGCACC	0.572													20	53					0	0	1	0	0
PODXL	5420	broad.mit.edu	37	7	131189133	131189133	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131189133C>T	uc003vqw.3	-	9	1872	c.1614G>A	c.(1612-1614)TGG>TGA	p.W538*	PODXL_uc003vqx.3_Nonsense_Mutation_p.W506*	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	538	Cytoplasmic (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					GAGGGACGATCCAGCTGTCCC	0.582													23	94					0	0	1	0	0
PODXL	5420	broad.mit.edu	37	7	131191022	131191022	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131191022C>T	uc003vqw.3	-	7	1566	c.1308G>A	c.(1306-1308)AAG>AAA	p.K436K	PODXL_uc003vqx.3_Silent_p.K404K	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	436	Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					CGCTTACCTCCTTTAGTTCAT	0.607													50	116					0	0	1	0	0
PODXL	5420	broad.mit.edu	37	7	131195771	131195771	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131195771C>T	uc003vqw.3	-	2	780	c.522G>A	c.(520-522)AAG>AAA	p.K174K	PODXL_uc003vqx.3_Silent_p.K174K	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	174	Thr-rich.|Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					GATGTTCTGCCTTAGTGGATG	0.547													46	189					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131831414	131831414	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131831414C>T	uc003vra.3	-	28	5139	c.4910G>A	c.(4909-4911)CGG>CAG	p.R1637Q	PLXNA4_uc003vqz.3_5'Flank	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1637	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CATAGGTGTCCGTGAGCGGAG	0.602													62	180					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131849943	131849943	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131849943C>T	uc003vra.3	-	23	4532	c.4303G>A	c.(4303-4305)GAG>AAG	p.E1435K		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1435	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						AGCATCTTCTCAGCCACTGAC	0.527													30	56					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131864564	131864564	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131864564G>A	uc003vra.3	-	20	3985	c.3756C>T	c.(3754-3756)TTC>TTT	p.F1252F		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1252	Helical; (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CGGCCACGATGAAAATGATGA	0.612													6	23					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131864581	131864581	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131864581C>T	uc003vra.3	-	20	3968	c.3739G>A	c.(3739-3741)GGC>AGC	p.G1247S		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1247	Helical; (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						ATGAGGAGGCCGCCAGCCACT	0.617													11	17					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131864654	131864654	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131864654G>A	uc003vra.3	-	20	3895	c.3666C>T	c.(3664-3666)TCC>TCT	p.S1222S		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1222	IPT/TIG 4.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCATCCCCGGGGAGTACTCCA	0.647													8	26					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131878824	131878824	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131878824G>A	uc003vra.3	-	14	3082	c.2853C>T	c.(2851-2853)TTC>TTT	p.F951F		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	951	IPT/TIG 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GACTCACCATGAAGTAATAGA	0.592													14	51					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131908343	131908343	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:131908343G>A	uc003vra.3	-	9	2269	c.2040C>T	c.(2038-2040)GTC>GTT	p.V680V		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	680	PSI 2.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CATGGGTGCAGACATGCCGGT	0.587													8	22					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192327	132192327	+	Missense_Mutation	SNP	G	A	A	rs151233036		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:132192327G>A	uc003vra.3	-	2	1355	c.1126C>T	c.(1126-1128)CGG>TGG	p.R376W	PLXNA4_uc003vrc.2_Missense_Mutation_p.R376W|PLXNA4_uc003vrb.2_Missense_Mutation_p.R376W	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	376	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCCTCGCCCCGGTAACAAGAC	0.587													7	87					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192395	132192395	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:132192395G>A	uc003vra.3	-	2	1287	c.1058C>T	c.(1057-1059)TCG>TTG	p.S353L	PLXNA4_uc003vrc.2_Missense_Mutation_p.S353L|PLXNA4_uc003vrb.2_Missense_Mutation_p.S353L	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	353	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GCACAGGGCCGACTCATCCAG	0.572													19	72					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192950	132192950	+	Missense_Mutation	SNP	G	A	A	rs141998123		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:132192950G>A	uc003vra.3	-	2	732	c.503C>T	c.(502-504)TCA>TTA	p.S168L	PLXNA4_uc003vrc.2_Missense_Mutation_p.S168L|PLXNA4_uc003vrb.2_Missense_Mutation_p.S168L	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	168	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCCAAAGACTGAGCCGCTCTC	0.542													21	68					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	132193081	132193081	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:132193081C>T	uc003vra.3	-	2	601	c.372G>A	c.(370-372)GAG>GAA	p.E124E	PLXNA4_uc003vrc.2_Silent_p.E124E|PLXNA4_uc003vrb.2_Silent_p.E124E	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	124	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCAGCCTGTTCTCCTTGTAGT	0.547													16	54					0	0	1	0	0
EXOC4	60412	broad.mit.edu	37	7	133502261	133502261	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:133502261C>T	uc003vrk.2	+	11	1733	c.1698C>T	c.(1696-1698)ACC>ACT	p.T566T	EXOC4_uc011kpo.1_Silent_p.T465T|EXOC4_uc003vrl.2_Silent_p.T176T|EXOC4_uc011kpp.1_Silent_p.T98T	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	566					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				ACGCAGACACCATGAAGGTGC	0.413													9	45					0	0	1	0	0
LRGUK	136332	broad.mit.edu	37	7	133883997	133883997	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:133883997A>T	uc003vrm.1	+	14	1587	c.1571A>T	c.(1570-1572)TAT>TTT	p.Y524F		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	524	Guanylate kinase-like.						ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						AAATATTCCTATTTTGAGCCT	0.353													17	127					0	0	1	0	0
AKR1B15	441282	broad.mit.edu	37	7	134256361	134256361	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:134256361G>A	uc011kpr.1	+	6	740	c.441G>A	c.(439-441)GGG>GGA	p.G147G	AKR1B15_uc011kps.1_Silent_p.G119G	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	147							oxidoreductase activity			ovary(1)	1						TACAGACTGGGGATGACTTTT	0.418													10	106					0	0	1	0	0
AKR1B15	441282	broad.mit.edu	37	7	134256405	134256405	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:134256405G>A	uc011kpr.1	+	6	784	c.485G>A	c.(484-486)GGA>GAA	p.G162E	AKR1B15_uc011kps.1_Missense_Mutation_p.G134E	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	162							oxidoreductase activity			ovary(1)	1						ATGATCAGTGGAAAAGGAACG	0.418													26	126					0	0	1	0	0
CALD1	800	broad.mit.edu	37	7	134617988	134617989	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:134617988_134617989CC>TT	uc003vrz.2	+	5	927_928	c.468_469CC>TT	c.(466-471)CGCCAA>CGTTAA	p.Q157*	CALD1_uc003vry.2_Nonsense_Mutation_p.Q157*|CALD1_uc003vsa.2_Nonsense_Mutation_p.Q157*|CALD1_uc003vsb.2_Nonsense_Mutation_p.Q157*|CALD1_uc010lmm.2_Nonsense_Mutation_p.Q157*|CALD1_uc011kpt.1_5'UTR|CALD1_uc003vsc.2_Nonsense_Mutation_p.Q151*|CALD1_uc003vsd.2_Nonsense_Mutation_p.Q151*|CALD1_uc011kpu.1_Nonsense_Mutation_p.Q162*|CALD1_uc011kpv.1_Nonsense_Mutation_p.Q21*|CALD1_uc003vse.2_Nonsense_Mutation_p.Q21*	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	157	Myosin and calmodulin-binding (By similarity).				cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						GTGAAAGTCGCCAAGAAAGATA	0.361													9	20					0	0	1	0	0
WDR91	29062	broad.mit.edu	37	7	134890719	134890719	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:134890719G>A	uc003vsp.2	-	5	748	c.686C>T	c.(685-687)CCT>CTT	p.P229L	WDR91_uc010lmq.2_5'UTR|WDR91_uc010lmr.2_RNA	NM_014149	NP_054868	A4D1P6	WDR91_HUMAN	WD repeat domain 91	229										breast(2)|ovary(1)|skin(1)	4						GGAGACATAAGGAGGCAATTT	0.522													55	161					0	0	1	0	0
CNOT4	4850	broad.mit.edu	37	7	135078869	135078869	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:135078869G>A	uc003vsv.1	-	10	1735	c.1428C>T	c.(1426-1428)TTC>TTT	p.F476F	CNOT4_uc003vss.2_Silent_p.F473F|CNOT4_uc011kpz.1_Silent_p.F473F|CNOT4_uc003vst.2_Silent_p.F476F|CNOT4_uc003vsu.1_Silent_p.F473F|CNOT4_uc011kpy.1_Silent_p.F476F	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	476					nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						GAAATTGAGGGAACCTCTGGG	0.507													40	90					0	0	1	0	0
SLC13A4	26266	broad.mit.edu	37	7	135384291	135384291	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:135384291C>T	uc003vta.2	-	8	1406	c.717G>A	c.(715-717)AAG>AAA	p.K239K	SLC13A4_uc003vtb.2_Silent_p.K240K	NM_012450	NP_036582	Q9UKG4	S13A4_HUMAN	solute carrier family 13 (sodium/sulfate	239						integral to plasma membrane	sodium:sulfate symporter activity				0						GGACTTGTGGCTTTTCCTAAC	0.463													17	47					0	0	1	0	0
SLC13A4	26266	broad.mit.edu	37	7	135386427	135386427	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:135386427C>T	uc003vta.2	-	7	1400	c.711_splice	c.e7+1	p.Q237_splice	SLC13A4_uc003vtb.2_Splice_Site_p.Q238_splice	NM_012450	NP_036582	Q9UKG4	S13A4_HUMAN	solute carrier family 13 (sodium/sulfate							integral to plasma membrane	sodium:sulfate symporter activity				0						CGTTCTATTACCTGGGATGGG	0.512													21	48					0	0	1	0	0
SLC13A4	26266	broad.mit.edu	37	7	135392938	135392938	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:135392938C>T	uc003vta.2	-	3	978	c.289G>A	c.(289-291)GCT>ACT	p.A97T	SLC13A4_uc003vtb.2_Missense_Mutation_p.A97T|SLC13A4_uc003vtc.1_Missense_Mutation_p.A97T	NM_012450	NP_036582	Q9UKG4	S13A4_HUMAN	solute carrier family 13 (sodium/sulfate	97	Helical; (Potential).					integral to plasma membrane	sodium:sulfate symporter activity				0						TCCACGGCAGCCGCCACGCAG	0.612													37	207					0	0	1	0	0
FAM180A	389558	broad.mit.edu	37	7	135419000	135419000	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:135419000G>A	uc003vtd.2	-	3	511	c.245C>T	c.(244-246)TCC>TTC	p.S82F	FAM180A_uc010lmt.2_RNA|FAM180A_uc010lmu.2_Missense_Mutation_p.S82F	NM_205855	NP_995327	Q6UWF9	F180A_HUMAN	hypothetical protein LOC389558 precursor	82						extracellular region				ovary(2)	2						CTTCCGCAAGGAGGCCAGCTC	0.577													44	97					0	0	1	0	0
CHRM2	1129	broad.mit.edu	37	7	136700041	136700041	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:136700041G>A	uc003vtf.1	+	4	1052	c.429G>A	c.(427-429)ATG>ATA	p.M143I	CHRM2_uc003vtg.1_Missense_Mutation_p.M143I|CHRM2_uc003vtj.1_Missense_Mutation_p.M143I|CHRM2_uc003vtk.1_Missense_Mutation_p.M143I|CHRM2_uc003vtl.1_Missense_Mutation_p.M143I|CHRM2_uc003vtm.1_Missense_Mutation_p.M143I|CHRM2_uc003vti.1_Missense_Mutation_p.M143I|CHRM2_uc003vto.1_Missense_Mutation_p.M143I|CHRM2_uc003vtn.1_Missense_Mutation_p.M143I|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	143	Helical; Name=4; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CAGGTATGATGATTGCAGCTG	0.502													41	90					0	0	1	0	0
CHRM2	1129	broad.mit.edu	37	7	136700713	136700713	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:136700713G>A	uc003vtf.1	+	4	1724	c.1101G>A	c.(1099-1101)AAG>AAA	p.K367K	CHRM2_uc003vtg.1_Silent_p.K367K|CHRM2_uc003vtj.1_Silent_p.K367K|CHRM2_uc003vtk.1_Silent_p.K367K|CHRM2_uc003vtl.1_Silent_p.K367K|CHRM2_uc003vtm.1_Silent_p.K367K|CHRM2_uc003vti.1_Silent_p.K367K|CHRM2_uc003vto.1_Silent_p.K367K|CHRM2_uc003vtn.1_Silent_p.K367K|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	367	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	AGATTGTGAAGATGACTAAGC	0.473													33	58					0	0	1	0	0
CREB3L2	64764	broad.mit.edu	37	7	137570244	137570244	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:137570244G>A	uc003vtw.2	-	9	1443	c.1048C>T	c.(1048-1050)CTC>TTC	p.L350F	CREB3L2_uc003vtx.1_Missense_Mutation_p.L350F|CREB3L2_uc003vtv.2_Missense_Mutation_p.L287F	NM_194071	NP_919047	Q70SY1	CR3L2_HUMAN	cAMP responsive element binding protein 3-like	350	Cytoplasmic (Potential).|Leucine-zipper.				chondrocyte differentiation|positive regulation of transcription, DNA-dependent|response to endoplasmic reticulum stress|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	cAMP response element binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L2(158)	soft_tissue(158)|upper_aerodigestive_tract(1)|ovary(1)	160						TGCTGAAGGAGAGTCCTGCCA	0.532			T	FUS	fibromyxoid sarcoma								25	63					0	0	1	0	0
TRIM24	8805	broad.mit.edu	37	7	138235915	138235915	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138235915C>T	uc003vuc.2	+	8	1466	c.1251C>T	c.(1249-1251)ATC>ATT	p.I417I	TRIM24_uc003vub.2_Silent_p.I417I	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	417					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						CTCAAAATATCATCAACTTAG	0.413													61	150					0	0	1	0	0
TRIM24	8805	broad.mit.edu	37	7	138252230	138252230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138252230C>T	uc003vuc.2	+	10	1750	c.1535C>T	c.(1534-1536)CCG>CTG	p.P512L	TRIM24_uc003vub.2_Missense_Mutation_p.P478L	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	512					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						TTCTAGCAACCGCCTCCACGT	0.348													46	122					0	0	1	0	0
SVOPL	136306	broad.mit.edu	37	7	138314867	138314867	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138314867C>T	uc011kqh.1	-	9	790	c.790G>A	c.(790-792)GAA>AAA	p.E264K	SVOPL_uc003vue.2_Missense_Mutation_p.E112K	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	264						integral to membrane	transmembrane transporter activity				0						CCTCTTTTTTCCTGGGGTAAT	0.388													11	55					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138394383	138394383	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138394383G>A	uc003vuf.2	-	20	2653	c.2415C>T	c.(2413-2415)GCC>GCT	p.A805A	ATP6V0A4_uc003vug.2_Silent_p.A805A|ATP6V0A4_uc003vuh.2_Silent_p.A805A	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	805	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GCAGTCGCAGGGCGTGCAGGA	0.373													83	212					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138418941	138418941	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138418941G>A	uc003vuf.2	-	15	1869	c.1631C>T	c.(1630-1632)TCG>TTG	p.S544L	ATP6V0A4_uc003vug.2_Missense_Mutation_p.S544L|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.S544L	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	544	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						CAGGATCACCGACATCTTCAT	0.428													31	68					0	0	1	0	0
TMEM213	155006	broad.mit.edu	37	7	138487709	138487709	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138487709C>T	uc010lna.2	+	3	330	c.219C>T	c.(217-219)ATC>ATT	p.I73I	TMEM213_uc010lnb.2_Silent_p.I72I	NM_001085429	NP_001078898	A2RRL7	TM213_HUMAN	transmembrane protein 213	73	Helical; (Potential).					integral to membrane					0						ACGGCTGGATCGCGGCAGCTG	0.607													9	34					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138522699	138522699	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138522699G>A	uc011kql.1	-	20	5854	c.5805C>T	c.(5803-5805)CTC>CTT	p.L1935L	KIAA1549_uc011kqi.1_Silent_p.L703L|KIAA1549_uc003vuk.3_Silent_p.L1869L|KIAA1549_uc011kqj.1_Silent_p.L1919L|KIAA1549_uc011kqk.1_Silent_p.L719L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1935						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						AGAGCCGGAGGAGCTCCTCGC	0.617			O	BRAF	pilocytic astrocytoma								13	35					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138566163	138566163	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138566163G>A	uc011kql.1	-	11	4249	c.4200C>T	c.(4198-4200)ATC>ATT	p.I1400I	KIAA1549_uc011kqi.1_Silent_p.I184I|KIAA1549_uc003vuk.3_Silent_p.I1350I|KIAA1549_uc011kqj.1_Silent_p.I1400I|KIAA1549_uc011kqk.1_Silent_p.I184I	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1400						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TCTTGGAAGGGATCTTTGACT	0.473			O	BRAF	pilocytic astrocytoma								32	71					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138602980	138602980	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138602980C>T	uc011kql.1	-	2	1441	c.1392G>A	c.(1390-1392)ATG>ATA	p.M464I	KIAA1549_uc003vuk.3_Missense_Mutation_p.M414I|KIAA1549_uc011kqj.1_Missense_Mutation_p.M464I	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	464						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CGACGCTACTCATTAGAGAGA	0.493			O	BRAF	pilocytic astrocytoma								18	51					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138603011	138603011	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138603011G>A	uc011kql.1	-	2	1410	c.1361C>T	c.(1360-1362)ACC>ATC	p.T454I	KIAA1549_uc003vuk.3_Missense_Mutation_p.T404I|KIAA1549_uc011kqj.1_Missense_Mutation_p.T454I	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	454						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TTCCAGCACGGTCATGCACAG	0.522			O	BRAF	pilocytic astrocytoma								26	58					0	0	1	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138738312	138738312	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138738312C>T	uc003vun.2	-	12	2722	c.2334G>A	c.(2332-2334)ATG>ATA	p.M778I		NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	778	PARP catalytic.				response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						CTTCTTCCTTCATCTGCGATT	0.388													30	98					0	0	1	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138745818	138745818	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138745818G>T	uc003vun.2	-	9	2448	c.2060C>A	c.(2059-2061)CCT>CAT	p.P687H	ZC3HAV1_uc003vuo.2_Missense_Mutation_p.P148H|ZC3HAV1_uc003vup.2_Missense_Mutation_p.P687H	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	687					response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						ATACCACTGAGGCACAAATGT	0.433													19	172					1.96292e-10	1.96968e-10	1	1	0
ZC3HAV1	56829	broad.mit.edu	37	7	138768660	138768660	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138768660A>T	uc003vun.2	-	3	951	c.563T>A	c.(562-564)CTC>CAC	p.L188H	ZC3HAV1_uc003vup.2_Missense_Mutation_p.L188H	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	188	C3H1-type 4.				response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						ATGGGACCGGAGGCAGTTGGG	0.572													16	50					0	0	1	0	0
UBN2	254048	broad.mit.edu	37	7	138978066	138978066	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:138978066C>T	uc011kqr.1	+	16	3758	c.3758C>T	c.(3757-3759)CCT>CTT	p.P1253L		NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	1253										ovary(1)|skin(1)	2						AATGTGACTCCTTTTGGGATG	0.488													46	89					0	0	1	0	0
HIPK2	28996	broad.mit.edu	37	7	139416468	139416468	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139416468G>A	uc003vvf.3	-	2	540	c.366C>T	c.(364-366)CTC>CTT	p.L122L	HIPK2_uc003vvd.3_Silent_p.L122L	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	122	Transcriptional corepression (By similarity).				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					AGGTATCAAGGAGGCTCACAG	0.552													12	26					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139636053	139636053	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139636053G>A	uc011kqv.1	+	5	564	c.400G>A	c.(400-402)GAA>AAA	p.E134K	TBXAS1_uc003vvh.2_Missense_Mutation_p.E134K|TBXAS1_uc010lne.2_Missense_Mutation_p.E66K|TBXAS1_uc011kqu.1_Missense_Mutation_p.E85K|TBXAS1_uc003vvi.2_Missense_Mutation_p.E134K|TBXAS1_uc003vvj.2_Missense_Mutation_p.E134K|TBXAS1_uc011kqw.1_Missense_Mutation_p.E114K	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	133	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					CAAAAGATGGGAAGAGGTCAG	0.498													78	180					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139653178	139653178	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139653178C>T	uc011kqv.1	+	7	767	c.603C>T	c.(601-603)CTC>CTT	p.L201L	TBXAS1_uc003vvh.2_Silent_p.L155L|TBXAS1_uc010lne.2_Silent_p.L87L|TBXAS1_uc011kqu.1_Silent_p.L106L|TBXAS1_uc003vvi.2_Silent_p.L155L|TBXAS1_uc003vvj.2_Silent_p.L155L|TBXAS1_uc011kqw.1_Silent_p.L135L	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	154	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					TGGTTCCCCTCATCAGCCAAG	0.473													23	80					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139657436	139657436	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139657436C>T	uc011kqv.1	+	9	997	c.833C>T	c.(832-834)TCA>TTA	p.S278L	TBXAS1_uc003vvh.2_Missense_Mutation_p.S232L|TBXAS1_uc010lne.2_Missense_Mutation_p.S164L|TBXAS1_uc011kqu.1_Missense_Mutation_p.S183L|TBXAS1_uc003vvi.2_Missense_Mutation_p.S232L|TBXAS1_uc003vvj.2_Missense_Mutation_p.S232L|TBXAS1_uc011kqw.1_Missense_Mutation_p.S212L	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	231	Helical; (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					TTTCAAGTATCATTTCCATCC	0.453													19	65					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139657446	139657446	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139657446C>T	uc011kqv.1	+	9	1007	c.843C>T	c.(841-843)TCC>TCT	p.S281S	TBXAS1_uc003vvh.2_Silent_p.S235S|TBXAS1_uc010lne.2_Silent_p.S167S|TBXAS1_uc011kqu.1_Silent_p.S186S|TBXAS1_uc003vvi.2_Silent_p.S235S|TBXAS1_uc003vvj.2_Silent_p.S235S|TBXAS1_uc011kqw.1_Silent_p.S215S	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	234	Helical; (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					CATTTCCATCCATAATGGTCC	0.458													24	67					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139657563	139657563	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139657563G>A	uc011kqv.1	+	9	1124	c.960G>A	c.(958-960)GAG>GAA	p.E320E	TBXAS1_uc003vvh.2_Silent_p.E274E|TBXAS1_uc010lne.2_Silent_p.E206E|TBXAS1_uc011kqu.1_Silent_p.E225E|TBXAS1_uc003vvi.2_Silent_p.E274E|TBXAS1_uc003vvj.2_Silent_p.E274E|TBXAS1_uc011kqw.1_Silent_p.E254E	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	273	Lumenal (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					CTGCCGAAGAGGTAACGTATT	0.478													6	58					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139717522	139717522	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139717522C>T	uc011kqv.1	+	13	1721	c.1557C>T	c.(1555-1557)TTC>TTT	p.F519F	TBXAS1_uc003vvh.2_Silent_p.F473F|TBXAS1_uc010lne.2_Silent_p.F405F|TBXAS1_uc003vvi.2_Silent_p.F473F|TBXAS1_uc003vvj.2_Intron|TBXAS1_uc011kqw.1_Silent_p.F453F	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	472	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					ACCTGCCCTTCGGGGCCGGCC	0.682													15	73					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139719887	139719887	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139719887C>T	uc011kqv.1	+	14	1895	c.1731C>T	c.(1729-1731)ATC>ATT	p.I577I	TBXAS1_uc003vvh.2_Silent_p.I531I|TBXAS1_uc010lne.2_Silent_p.I463I|TBXAS1_uc003vvi.2_Silent_p.I531I|TBXAS1_uc003vvj.2_3'UTR|TBXAS1_uc011kqw.1_Silent_p.I511I	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	530	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					ATATCAAGATCGTATCCCGCT	0.423													19	47					0	0	1	0	0
PARP12	64761	broad.mit.edu	37	7	139727187	139727187	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139727187G>A	uc003vvl.1	-	10	2391	c.1517C>T	c.(1516-1518)TCC>TTC	p.S506F	PARP12_uc003vvk.1_Missense_Mutation_p.S292F|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	506	PARP catalytic.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					CTCTTCCGAGGAAGAACTAAG	0.448													43	100					0	0	1	0	0
PARP12	64761	broad.mit.edu	37	7	139741513	139741513	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139741513G>A	uc003vvl.1	-	6	1987	c.1113C>T	c.(1111-1113)TTC>TTT	p.F371F	PARP12_uc003vvk.1_Silent_p.F157F|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	371	WWE 2.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					TGGTGAGGATGAAGTGTGGAG	0.498													42	199					0	0	1	0	0
PARP12	64761	broad.mit.edu	37	7	139756733	139756733	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139756733C>T	uc003vvl.1	-	3	1557	c.683G>A	c.(682-684)AGA>AAA	p.R228K	PARP12_uc003vvk.1_Missense_Mutation_p.R14K|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	228						nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					ATGTGCATTTCTATAAATGGT	0.473													33	126					0	0	1	0	0
JHDM1D	80853	broad.mit.edu	37	7	139801824	139801824	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139801824G>A	uc003vvm.2	-	12	1569	c.1565C>T	c.(1564-1566)CCT>CTT	p.P522L	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	522					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TAGGTTAGAAGGAGTTCGGAC	0.433													38	165					0	0	1	0	0
JHDM1D	80853	broad.mit.edu	37	7	139826473	139826473	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:139826473G>A	uc003vvm.2	-	6	856	c.852C>T	c.(850-852)GAC>GAT	p.D284D		NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	284	JmjC.	Iron; catalytic.			midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TTCCACCGAAGTCAATGTGGA	0.398													53	113					0	0	1	0	0
DENND2A	27147	broad.mit.edu	37	7	140219477	140219477	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:140219477G>A	uc010lnj.2	-	17	3098	c.2953C>T	c.(2953-2955)CCC>TCC	p.P985S	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.P985S|DENND2A_uc003vvw.2_Missense_Mutation_p.P985S	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	985										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TCTCCACTGGGGAGTGTTTCC	0.527													10	144					0	0	1	0	0
DENND2A	27147	broad.mit.edu	37	7	140258001	140258001	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:140258001G>A	uc010lnj.2	-	9	2046	c.1901C>T	c.(1900-1902)TCA>TTA	p.S634L	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.S634L|DENND2A_uc003vvw.2_Missense_Mutation_p.S634L|DENND2A_uc003vvx.2_Missense_Mutation_p.S634L	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	634	UDENN.									ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TAAGACAAATGAGAATGTTTC	0.473													18	47					0	0	1	0	0
DENND2A	27147	broad.mit.edu	37	7	140301677	140301677	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:140301677G>A	uc010lnj.2	-	1	666	c.521C>T	c.(520-522)TCG>TTG	p.S174L	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.S174L|DENND2A_uc003vvw.2_Missense_Mutation_p.S174L|DENND2A_uc003vvx.2_Missense_Mutation_p.S174L	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	174										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					CAGCCCTGCCGACCCATCCTT	0.597													10	80					0	0	1	0	0
ADCK2	90956	broad.mit.edu	37	7	140380881	140380881	+	Missense_Mutation	SNP	C	T	T	rs138501789		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:140380881C>T	uc003vvy.1	+	4	1427	c.1249C>T	c.(1249-1251)CCC>TCC	p.P417S	ADCK2_uc003vvz.2_Missense_Mutation_p.P417S	NM_052853	NP_443085	Q7Z695	ADCK2_HUMAN	aarF domain containing kinase 2	417	Protein kinase.					integral to membrane	ATP binding|protein serine/threonine kinase activity				0	Melanoma(164;0.00956)					GGCAGGAATTCCCGTGGACTT	0.567													5	53					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140434525	140434525	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:140434525G>A	uc003vwc.3	-	18	2234	c.2173C>T	c.(2173-2175)CAC>TAC	p.H725Y		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	725					activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	GCACTGCGGTGAATTTTTGGC	0.368		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				57	143					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140481402	140481402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:140481402C>T	uc003vwc.3	-	11	1467	c.1406G>A	c.(1405-1407)GGA>GAA	p.G469E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	469	ATP (By similarity).|Protein kinase.		G -> A (in NHL; also in a lung adenocarcinoma sample; somatic mutation; elevated kinase activity; efficiently induces cell transformation).|G -> E (in CFC syndrome and colon cancer).|G -> R (in NHL).|G -> V (in a colorectal adenocarcinoma sample; somatic mutation).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.G469A(19)|p.G469V(12)|p.G469S(6)|p.G469R(6)|p.G469E(5)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	GTAGACTGTTCCAAATGATCC	0.373	G469A(NCIH1395_LUNG)|G469A(NCIH1755_LUNG)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				31	146					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140494159	140494159	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:140494159G>A	uc003vwc.3	-	8	1150	c.1089C>T	c.(1087-1089)TCC>TCT	p.S363S		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	363					activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	GAGCTGATGAGGATCGGTCTC	0.408		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				33	93					0	0	1	0	0
AGK	55750	broad.mit.edu	37	7	141336797	141336797	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141336797C>T	uc003vwi.2	+	11	877	c.706C>T	c.(706-708)CAC>TAC	p.H236Y	AGK_uc011krg.1_RNA	NM_018238	NP_060708	Q53H12	AGK_HUMAN	acylglycerol kinase precursor	236					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	mitochondrial membrane	acylglycerol kinase activity|ATP binding|diacylglycerol kinase activity|NAD+ kinase activity			ovary(1)|breast(1)	2	Melanoma(164;0.0171)					CAAAGCAGCCCACTTTTTCAG	0.313													10	50					0	0	1	0	0
WEE2	494551	broad.mit.edu	37	7	141408672	141408673	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141408672_141408673CC>TT	uc003vwn.2	+	1	520_521	c.114_115CC>TT	c.(112-117)AGCCAA>AGTTAA	p.Q39*	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	39					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					AGGCTTCGAGCCAAACCCCAGA	0.465													58	198					0	0	1	0	0
TAS2R4	50832	broad.mit.edu	37	7	141478552	141478552	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141478552C>T	uc003vwq.1	+	1	264	c.264C>T	c.(262-264)TTC>TTT	p.F88F		NM_016944	NP_058640	Q9NYW5	TA2R4_HUMAN	taste receptor T2R4	88	Helical; Name=3; (Potential).				sensory perception of taste	cilium membrane	taste receptor activity				0	Melanoma(164;0.0171)			BRCA - Breast invasive adenocarcinoma(188;0.196)		TGTTGTGTTTCATGTTTTTGG	0.418													44	144					0	0	1	0	0
TAS2R5	54429	broad.mit.edu	37	7	141490495	141490495	+	Missense_Mutation	SNP	C	T	T	rs146440743		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141490495C>T	uc003vwr.1	+	1	479	c.334C>T	c.(334-336)CGC>TGC	p.R112C		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	112	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					GACCTTCGATCGCCCGGCCTA	0.483													7	87					0	0	1	0	0
PRSS37	136242	broad.mit.edu	37	7	141536282	141536282	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141536282C>T	uc003vws.1	-	5	993	c.621G>A	c.(619-621)GTG>GTA	p.V207V	PRSS37_uc011krk.1_Silent_p.V194V|PRSS37_uc011krl.1_Silent_p.V206V|PRSS37_uc003vwt.1_Silent_p.V194V	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	207	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						TGAAGTGCCCCACCTCGATTC	0.448													30	83					0	0	1	0	0
PRSS37	136242	broad.mit.edu	37	7	141536293	141536293	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141536293C>T	uc003vws.1	-	5	982	c.610G>A	c.(610-612)GGA>AGA	p.G204R	PRSS37_uc011krk.1_Missense_Mutation_p.G191R|PRSS37_uc011krl.1_Missense_Mutation_p.G203R|PRSS37_uc003vwt.1_Missense_Mutation_p.G191R	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	204	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						ACCTCGATTCCCTGGAGCTTG	0.443													31	68					0	0	1	0	0
OR9A4	130075	broad.mit.edu	37	7	141619083	141619083	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141619083G>A	uc003vwu.1	+	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					ACATCATTATGAACAGACACA	0.458													77	157					0	0	1	0	0
OR9A4	130075	broad.mit.edu	37	7	141619380	141619380	+	Silent	SNP	G	A	A	rs143629932		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141619380G>A	uc003vwu.1	+	1	705	c.705G>A	c.(703-705)AGG>AGA	p.R235R		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R235R(1)		skin(1)	1	Melanoma(164;0.0171)					CTGGCCGGAGGAAATCCTTCT	0.502													45	105					0	0	1	0	0
CLEC5A	23601	broad.mit.edu	37	7	141645147	141645147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141645147C>T	uc003vwv.1	-	3	330	c.133G>A	c.(133-135)GGA>AGA	p.G45R	CLEC5A_uc011krm.1_Missense_Mutation_p.G45R|CLEC5A_uc003vww.1_Missense_Mutation_p.G45R|CLEC5A_uc010lnq.1_Missense_Mutation_p.G45R|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	45	Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TTACCTGTTCCATAGCTCCTG	0.458													39	59					0	0	1	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672818	141672818	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141672818C>T	uc003vwx.1	-	1	756	c.672G>A	c.(670-672)ATG>ATA	p.M224I		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	224	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					TCATTGTCCTCATGTGCCTTC	0.468													24	62					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141721479	141721479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141721479G>A	uc003vwy.2	+	6	706	c.652G>A	c.(652-654)GAA>AAA	p.E218K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	218	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTACCAAGTTGAAATCTCCAG	0.438													33	97					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141722084	141722084	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141722084G>T	uc003vwy.2	+	7	781	c.727G>T	c.(727-729)GGG>TGG	p.G243W		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	243	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTCGAGCATTGGGCCCCTACT	0.522													12	60					2.27111e-07	2.2761e-07	1	1	0
MGAM	8972	broad.mit.edu	37	7	141734499	141734499	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141734499G>A	uc003vwy.2	+	16	1871	c.1817G>A	c.(1816-1818)AGA>AAA	p.R606K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	606	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CCTAATAAGAGAAGCTTCATT	0.502													9	32					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141740591	141740591	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141740591C>T	uc003vwy.2	+	21	2497	c.2443C>T	c.(2443-2445)CTT>TTT	p.L815F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	815	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGGACTTCACCTTCGAGGAGG	0.478													16	38					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141752717	141752717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141752717C>T	uc003vwy.2	+	26	3146	c.3092C>T	c.(3091-3093)CCC>CTC	p.P1031L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1031	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AATGCCTTCCCCTCCACACCC	0.458													20	70					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141752740	141752740	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141752740C>T	uc003vwy.2	+	26	3169	c.3115C>T	c.(3115-3117)CGC>TGC	p.R1039C		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1039	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GAACCCCCTTCGCCTGGATGT	0.458													11	57					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141794427	141794427	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141794427G>A	uc003vwy.2	+	39	4680	c.4626G>A	c.(4624-4626)ATG>ATA	p.M1542I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1542	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CAGGCATGATGGAGTTCAGCC	0.552													27	69					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141803210	141803210	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141803210C>T	uc003vwy.2	+	47	5521	c.5467C>T	c.(5467-5469)CCC>TCC	p.P1823S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1823	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GGTCATAACACCCTCCTTCAA	0.493													9	22					0	0	1	0	0
TRYX3	136541	broad.mit.edu	37	7	141952311	141952311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141952311C>T	uc003vxb.2	-	4	877	c.557G>A	c.(556-558)GGA>GAA	p.G186E	TRYX3_uc003vxc.3_Missense_Mutation_p.G186E	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	186	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					CTGCCTCCTTCCTGGCACAAT	0.423													58	119					0	0	1	0	0
TRYX3	136541	broad.mit.edu	37	7	141952422	141952422	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141952422G>A	uc003vxb.2	-	4	766	c.446C>T	c.(445-447)CCC>CTC	p.P149L	TRYX3_uc003vxc.3_Missense_Mutation_p.P149L	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	149	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					CAGTGAATCGGGCTCTTTGTC	0.373													35	87					0	0	1	0	0
TRYX3	136541	broad.mit.edu	37	7	141955043	141955043	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:141955043G>A	uc003vxb.2	-	3	588	c.268C>T	c.(268-270)CAT>TAT	p.H90Y	TRYX3_uc003vxc.3_Missense_Mutation_p.H90Y	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	90	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					AAGTGTGGATGATGAATCATC	0.413													34	104					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142001208	142001208	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142001208C>T	uc011kro.1	+	2	345	c.300C>T	c.(298-300)TCC>TCT	p.S100S						SubName: Full=V_segment translation product; Flags: Fragment;																		AGATCCGGTCCACAAAGCTGG	0.453													6	26					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142458426	142458426	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142458426G>A	uc003wak.2	+	2	78	c.61G>A	c.(61-63)GAT>AAT	p.D21N	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Intron|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	21					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CTTTGATGATGATGACAAGAT	0.532									Hereditary_Pancreatitis				53	257					0	0	1	0	0
TRY6	154754	broad.mit.edu	37	7	142479923	142479923	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142479923G>A	uc011ksq.1	+	2	138	c.55G>A	c.(55-57)GAT>AAT	p.D19N	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						TGTCCCCTTTGATGATGATGA	0.547													75	270					0	0	1	0	0
TRY6	154754	broad.mit.edu	37	7	142480013	142480013	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142480013G>A	uc011ksq.1	+	2	228	c.145G>A	c.(145-147)GGT>AGT	p.G49S	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CCACTTCTGCGGTGGCTCCCT	0.562													18	218					0	0	1	0	0
TRY6	154754	broad.mit.edu	37	7	142480031	142480031	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142480031G>A	uc011ksq.1	+	2	246	c.163G>A	c.(163-165)GAA>AAA	p.E55K	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CCTCATCAGCGAACAGTGGGT	0.577													48	140					0	0	1	0	0
TRY6	154754	broad.mit.edu	37	7	142481378	142481378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142481378G>A	uc011ksq.1	+	3	535	c.452G>A	c.(451-453)GGG>GAG	p.G151E	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CTGAGCTCTGGGGGTGAGTGG	0.547													4	22					0	0	1	0	0
TRY6	154754	broad.mit.edu	37	7	142482341	142482341	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142482341G>A	uc011ksq.1	+	5	804	c.721G>A	c.(721-723)GAC>AAC	p.D241N	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CTGGATTAAGGACACCATAGC	0.502													28	106					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142498732	142498732	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142498732G>A	uc011ksh.1	+	3		c.111G>A			uc011ksi.1_RNA|uc003vzw.1_RNA|uc010loj.1_RNA|uc003wad.2_RNA|uc003wag.1_3'UTR|uc003wbe.3_RNA|uc003wbf.3_RNA|uc003wbg.3_RNA|uc003wbh.3_Silent_p.L49L|uc003wbi.3_RNA|uc003wbj.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone:TCRVB.3.																		CAGAGGACCTGAAAAACGTGT	0.562													18	57					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142499852	142499852	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142499852C>T	uc003wbe.3	+	4		c.522C>T			uc003wbf.3_RNA|uc003wbh.3_Missense_Mutation_p.T203I|uc003wbi.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T cell receptor V beta14-D-J, partial cds.																		GGGAAGGCCACCTTGTATGCC	0.557													13	42					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142561068	142561068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142561068C>T	uc011kst.1	+	5	870	c.83C>T	c.(82-84)TCA>TTA	p.S28L	EPHB6_uc011ksu.1_Missense_Mutation_p.S28L|EPHB6_uc003wbs.2_5'UTR|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_5'UTR	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	28						extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					CTGGTGTCTTCAGTTCTGGCT	0.557													14	38					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142561799	142561799	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142561799C>T	uc011kst.1	+	7	1028	c.241C>T	c.(241-243)CCT>TCT	p.P81S	EPHB6_uc011ksu.1_Missense_Mutation_p.P81S|EPHB6_uc003wbs.2_5'UTR|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_5'UTR	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	81	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GGCAGGGGCCCCTCCAGGCAC	0.632													77	202					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142564239	142564239	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142564239C>T	uc011kst.1	+	10	2250	c.1463C>T	c.(1462-1464)CCC>CTC	p.P488L	EPHB6_uc011ksu.1_Missense_Mutation_p.P488L|EPHB6_uc003wbs.2_Missense_Mutation_p.P196L|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Missense_Mutation_p.P196L|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	488	Fibronectin type-III 2.|Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					ACTCTAGTGCCCTCTGCTGTC	0.597													17	43					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142565412	142565412	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142565412C>T	uc011kst.1	+	12	2584	c.1797C>T	c.(1795-1797)TCC>TCT	p.S599S	EPHB6_uc011ksu.1_Silent_p.S599S|EPHB6_uc003wbs.2_Silent_p.S307S|EPHB6_uc003wbt.2_Silent_p.S73S|EPHB6_uc003wbu.2_Silent_p.S307S|EPHB6_uc003wbv.2_5'UTR	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	599	Helical; (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					TGATCGGCTCCATCCTGGGGG	0.657													8	14					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142566816	142566816	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142566816C>T	uc011kst.1	+	16	3160	c.2373C>T	c.(2371-2373)TTC>TTT	p.F791F	EPHB6_uc011ksu.1_Silent_p.F791F|EPHB6_uc003wbs.2_Silent_p.F499F|EPHB6_uc003wbt.2_Silent_p.F265F|EPHB6_uc003wbu.2_Silent_p.F499F|EPHB6_uc003wbv.2_Silent_p.F175F	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	791	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GCTTTGCCTTCGTCCATCGCT	0.632													10	38					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142569570	142569571	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142569570_142569571GG>AA	uc003wbx.1	-	15	2283_2284	c.2067_2068CC>TT	c.(2065-2070)TCCCGC>TCTTGC	p.R690C	TRPV6_uc003wbw.1_Missense_Mutation_p.R476C|TRPV6_uc010lou.1_Missense_Mutation_p.R561C	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	690	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GCACTGCTGCGGGAGGTACTTC	0.569													13	54					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142571444	142571444	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142571444C>T	uc003wbx.1	-	13	1761	c.1545G>A	c.(1543-1545)GAG>GAA	p.E515E	TRPV6_uc003wbw.1_Silent_p.E301E|TRPV6_uc010lou.1_Silent_p.E386E	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	515					regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CCTCGGGGTCCTCTGTCTGGA	0.587													15	140					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142572322	142572322	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142572322G>A	uc003wbx.1	-	11	1590	c.1374C>T	c.(1372-1374)CTC>CTT	p.L458L	TRPV6_uc003wbw.1_Silent_p.L244L|TRPV6_uc010lou.1_Silent_p.L329L	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	458	Helical; (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					AGCCCAGCACGAGTGCAAAGG	0.592													22	44					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142572875	142572875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142572875C>T	uc003wbx.1	-	9	1381	c.1165G>A	c.(1165-1167)GAG>AAG	p.E389K	TRPV6_uc003wbw.1_Missense_Mutation_p.E175K|TRPV6_uc010lou.1_Missense_Mutation_p.E260K	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	389	Helical; (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GTCACCAGCTCCCCGACCAGC	0.562													19	99					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142574200	142574200	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142574200G>A	uc003wbx.1	-	6	939	c.723C>T	c.(721-723)CTC>CTT	p.L241L	TRPV6_uc003wbw.1_Silent_p.L27L|TRPV6_uc010lou.1_Silent_p.L112L	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	241	ANK 5.|Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					TGAAAGGGGTGAGACCCTGGT	0.572													25	32					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142574244	142574244	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142574244C>T	uc003wbx.1	-	6	895	c.679G>A	c.(679-681)GAC>AAC	p.D227N	TRPV6_uc003wbw.1_Missense_Mutation_p.D13N|TRPV6_uc010lou.1_Missense_Mutation_p.D98N	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	227	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					TGCAGGTGGTCCCCATGTCTG	0.572													25	48					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142605697	142605697	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142605697C>T	uc003wby.1	-	15	2437	c.2173G>A	c.(2173-2175)GAG>AAG	p.E725K		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	725	Cytoplasmic (Potential).|Involved in Ca(2+)-dependent inactivation (By similarity).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TGGTAGACCTCCTCTCCATCC	0.557													27	69					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142605896	142605896	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142605896A>C	uc003wby.1	-	15	2238	c.1974T>G	c.(1972-1974)GAT>GAG	p.D658E		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	658	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GCTCCTGGTCATCCTCCTTGT	0.537													13	59					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142609852	142609852	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142609852C>T	uc003wby.1	-	13	1848	c.1584G>A	c.(1582-1584)ATG>ATA	p.M528I		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	528					protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TGAACAGTGCCATGGGGTAGT	0.498													37	83					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142612498	142612498	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142612498C>T	uc003wby.1	-	10	1529	c.1265G>A	c.(1264-1266)GGG>GAG	p.G422E		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	422	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GAATGGCCCCCCAAGAATCGT	0.498													13	137					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142612675	142612675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142612675C>T	uc003wby.1	-	9	1450	c.1186G>A	c.(1186-1188)GCT>ACT	p.A396T		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	396	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					ATGATCACAGCCCCAACGATG	0.537													9	41					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142612703	142612703	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142612703C>T	uc003wby.1	-	9	1422	c.1158G>A	c.(1156-1158)CTG>CTA	p.L386L		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	386	Extracellular (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GCTCCCCCACCAGCCTGATGA	0.537													12	38					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142625187	142625187	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142625187C>T	uc003wby.1	-	7	1169	c.905G>A	c.(904-906)CGA>CAA	p.R302Q	TRPV5_uc003wbz.2_Missense_Mutation_p.R302Q	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	302	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity	p.R302R(1)		ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CCATACCTCTCGTTTATCAGA	0.522													13	66					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142625942	142625942	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142625942G>A	uc003wby.1	-	6	870	c.606C>T	c.(604-606)ATC>ATT	p.I202I	TRPV5_uc003wbz.2_Silent_p.I202I	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	202	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GGAGGATGAGGATGTGTAATA	0.562													27	113					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142626122	142626122	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142626122G>A	uc003wby.1	-	5	845	c.581C>T	c.(580-582)TCC>TTC	p.S194F	TRPV5_uc003wbz.2_Missense_Mutation_p.S194F	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	194	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CTTACCCAGGGAGTCCTGGGC	0.612													14	30					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142626169	142626169	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142626169G>A	uc003wby.1	-	5	798	c.534C>T	c.(532-534)ATC>ATT	p.I178I	TRPV5_uc003wbz.2_Silent_p.I178I	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	178	ANK 4.|Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GCAGCCGCACGATCTCCTCGC	0.617													10	31					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142626553	142626553	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142626553G>A	uc003wby.1	-	4	721	c.457C>T	c.(457-459)CGC>TGC	p.R153C	TRPV5_uc003wbz.2_Missense_Mutation_p.R153C	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	153	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GGACTACGGCGGAAGGCAGTG	0.617													32	74					0	0	1	0	0
C7orf34	135927	broad.mit.edu	37	7	142636722	142636722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142636722C>T	uc003wca.2	+	1	120	c.79C>T	c.(79-81)CCT>TCT	p.P27S		NM_178829	NP_849151	Q96L11	CG034_HUMAN	hypothetical protein LOC135927	2						extracellular region					0	Melanoma(164;0.059)					CAGGTCCATGCCTCCCCTGGC	0.657													13	51					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142641786	142641786	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142641786G>A	uc003wcb.2	-	12	1567	c.1357C>T	c.(1357-1359)CGC>TGC	p.R453C		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	453	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TTTCTGAGGCGAGTGATGAGG	0.607													4	52					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142643344	142643344	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142643344G>A	uc003wcb.2	-	11	1474	c.1264C>T	c.(1264-1266)CTG>TTG	p.L422L		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	422	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					AAAGCCGCCAGCGTGGGCTCG	0.592													4	44					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142643391	142643391	+	Missense_Mutation	SNP	C	T	T	rs61729041		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142643391C>T	uc003wcb.2	-	11	1427	c.1217G>A	c.(1216-1218)CGA>CAA	p.R406Q		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	406	Extracellular (Potential).		R -> Q (in KEL26 antigen).		proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					CTTCATCCATCGTGGGCGGGC	0.562													12	23					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142650990	142650990	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142650990C>T	uc003wcb.2	-	9	1188	c.978G>A	c.(976-978)CCG>CCA	p.P326P		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	326	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TCAGGGACATCGGTGTGAATG	0.522													40	166					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142655514	142655514	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142655514C>T	uc003wcb.2	-	5	612	c.402G>A	c.(400-402)GAG>GAA	p.E134E		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	134	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					AATTCTGGACCTCTAGAAAGG	0.328													12	39					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142658103	142658103	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142658103G>A	uc003wcb.2	-	4	522	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	104	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					AGGCAAAGCTGAAGAAGTCGG	0.512													35	136					0	0	1	0	0
OR9A2	135924	broad.mit.edu	37	7	142723368	142723368	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142723368G>A	uc003wcc.1	-	1	852	c.852C>T	c.(850-852)TTC>TTT	p.F284F		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					GAGTAAAGATGAAAGGATTCA	0.438													33	85					0	0	1	0	0
OR9A2	135924	broad.mit.edu	37	7	142723973	142723973	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142723973C>T	uc003wcc.1	-	1	247	c.247G>A	c.(247-249)GGA>AGA	p.G83R		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					AAGAGCAATCCCCAAAGCATC	0.483													25	55					0	0	1	0	0
OR9A2	135924	broad.mit.edu	37	7	142724037	142724037	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142724037G>A	uc003wcc.1	-	1	183	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					GGTGGCTGAGGAAGAAATACA	0.443													36	105					0	0	1	0	0
OR6V1	346517	broad.mit.edu	37	7	142749482	142749482	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142749482C>T	uc011ksv.1	+	1	45	c.45C>T	c.(43-45)TTC>TTT	p.F15F		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TCTTGGGCTTCTCCTCCTTTG	0.443													49	129					0	0	1	0	0
OR6V1	346517	broad.mit.edu	37	7	142750008	142750008	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142750008C>T	uc011ksv.1	+	1	571	c.571C>T	c.(571-573)CGC>TGC	p.R191C		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					CTCTGACACTCGCCTGTTGGA	0.512													59	164					0	0	1	0	0
OR6V1	346517	broad.mit.edu	37	7	142750032	142750032	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142750032C>T	uc011ksv.1	+	1	595	c.595C>T	c.(595-597)CTG>TTG	p.L199L		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					CTGGGACTTTCTGATGGCCTT	0.532													72	153					0	0	1	0	0
OR6V1	346517	broad.mit.edu	37	7	142750359	142750359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142750359G>A	uc011ksv.1	+	1	922	c.922G>A	c.(922-924)GGC>AGC	p.G308S		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					GAGGCTGAAAGGCCTTTGCAA	0.542													10	20					0	0	1	0	0
PIP	5304	broad.mit.edu	37	7	142836195	142836195	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142836195C>T	uc003wcf.1	+	3	265	c.229C>T	c.(229-231)CCT>TCT	p.P77S		NM_002652	NP_002643	P12273	PIP_HUMAN	prolactin-induced protein precursor	77						extracellular region	actin binding			ovary(1)	1	Melanoma(164;0.059)	Ovarian(593;2.82e-05)|Breast(660;0.012)		BRCA - Breast invasive adenocarcinoma(188;0.0026)|LUSC - Lung squamous cell carcinoma(290;0.0733)|Lung(243;0.08)		TAGCAGCATCCCTCTACAAGG	0.428													30	90					0	0	1	0	0
PIP	5304	broad.mit.edu	37	7	142836648	142836648	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142836648G>A	uc003wcf.1	+	4	390	c.354G>A	c.(352-354)CGG>CGA	p.R118R		NM_002652	NP_002643	P12273	PIP_HUMAN	prolactin-induced protein precursor	118						extracellular region	actin binding			ovary(1)	1	Melanoma(164;0.059)	Ovarian(593;2.82e-05)|Breast(660;0.012)		BRCA - Breast invasive adenocarcinoma(188;0.0026)|LUSC - Lung squamous cell carcinoma(290;0.0733)|Lung(243;0.08)		ATGTTATTCGGGAATTAGGCA	0.453													66	141					0	0	1	0	0
PIP	5304	broad.mit.edu	37	7	142836667	142836667	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142836667G>A	uc003wcf.1	+	4	409	c.373G>A	c.(373-375)GAT>AAT	p.D125N		NM_002652	NP_002643	P12273	PIP_HUMAN	prolactin-induced protein precursor	125						extracellular region	actin binding			ovary(1)	1	Melanoma(164;0.059)	Ovarian(593;2.82e-05)|Breast(660;0.012)		BRCA - Breast invasive adenocarcinoma(188;0.0026)|LUSC - Lung squamous cell carcinoma(290;0.0733)|Lung(243;0.08)		CATCTGCCCTGATGATGCTGC	0.473													59	164					0	0	1	0	0
PIP	5304	broad.mit.edu	37	7	142836687	142836687	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142836687C>T	uc003wcf.1	+	4	429	c.393C>T	c.(391-393)CCC>CCT	p.P131P		NM_002652	NP_002643	P12273	PIP_HUMAN	prolactin-induced protein precursor	131						extracellular region	actin binding			ovary(1)	1	Melanoma(164;0.059)	Ovarian(593;2.82e-05)|Breast(660;0.012)		BRCA - Breast invasive adenocarcinoma(188;0.0026)|LUSC - Lung squamous cell carcinoma(290;0.0733)|Lung(243;0.08)		CTGTAATCCCCATCAAAAACA	0.438													66	187					0	0	1	0	0
TAS2R39	259285	broad.mit.edu	37	7	142880658	142880658	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142880658C>T	uc011ksw.1	+	1	147	c.147C>T	c.(145-147)ATC>ATT	p.I49I		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	49	Helical; Name=1; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					TCATTGGTATCATTGCAAATG	0.408													31	45					0	0	1	0	0
TAS2R39	259285	broad.mit.edu	37	7	142880804	142880804	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142880804C>T	uc011ksw.1	+	1	293	c.293C>T	c.(292-294)TCA>TTA	p.S98L		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	98	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					ACCATCAGCTCAACCTCCCTA	0.388													46	116					0	0	1	0	0
TAS2R39	259285	broad.mit.edu	37	7	142881021	142881021	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142881021C>T	uc011ksw.1	+	1	510	c.510C>T	c.(508-510)TTC>TTT	p.F170F		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	170	Helical; Name=4; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					TTATTTCCTTCAGTCACAGCA	0.433													18	59					0	0	1	0	0
TAS2R39	259285	broad.mit.edu	37	7	142881273	142881273	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142881273G>A	uc011ksw.1	+	1	762	c.762G>A	c.(760-762)ATG>ATA	p.M254I		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	254	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					ACCCCAGCATGGAGGCTCACA	0.488													38	126					0	0	1	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919877	142919877	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142919877G>A	uc011ksx.1	+	1	706	c.706G>A	c.(706-708)GAC>AAC	p.D236N		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	236	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					AGGGTCCAGGGACCCCAGCAT	0.507													12	167					0	0	1	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919888	142919888	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:142919888G>A	uc011ksx.1	+	1	717	c.717G>A	c.(715-717)ATG>ATA	p.M239I		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	239	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					ACCCCAGCATGAAGGCTCACA	0.498													45	141					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143013423	143013423	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143013423G>A	uc003wcr.1	+	1	205	c.118G>A	c.(118-120)GGG>AGG	p.G40R	CLCN1_uc011ktc.1_5'UTR	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	40	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CTCTGAGAATGGGGGCCTCCA	0.607													47	131					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143018840	143018840	+	Missense_Mutation	SNP	C	T	T	rs143506735		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143018840C>T	uc003wcr.1	+	5	682	c.595C>T	c.(595-597)CGT>TGT	p.R199C	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Missense_Mutation_p.R47C	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	199					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GACAATACTTCGTGGGGTTGT	0.507													21	58					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143020469	143020469	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143020469G>A	uc003wcr.1	+	6	851	c.764G>A	c.(763-765)GGG>GAG	p.G255E	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_Intron|CLCN1_uc010loy.1_Intron	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	255					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GTGTTCTGCGGGGTATATGAG	0.602													25	66					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143027960	143027960	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143027960C>T	uc003wcr.1	+	8	1036	c.949C>T	c.(949-951)CGA>TGA	p.R317*	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Silent_p.F112F	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	317	Helical; (By similarity).		R -> Q (in THD).		muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CTTTGTGTTTCGAGTGCTGGC	0.517													38	88					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143048907	143048907	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143048907C>T	uc003wcr.1	+	23	2903	c.2816C>T	c.(2815-2817)CCT>CTT	p.P939L	CLCN1_uc011ktc.1_Missense_Mutation_p.P551L	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	939	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CCAGAGCCCCCTCTCTCCCTG	0.647													25	48					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143049018	143049018	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143049018G>A	uc003wcr.1	+	23	3014	c.2927G>A	c.(2926-2928)CGA>CAA	p.R976Q	CLCN1_uc011ktc.1_Missense_Mutation_p.R588Q	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	976	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CCCAGCCTGCGATCCACAGAC	0.617													26	94					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143049029	143049029	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143049029G>A	uc003wcr.1	+	23	3025	c.2938G>A	c.(2938-2940)GAG>AAG	p.E980K	CLCN1_uc011ktc.1_Missense_Mutation_p.E592K	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	980	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					ATCCACAGACGAGGAGGATGA	0.622													27	96					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143049044	143049044	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143049044G>A	uc003wcr.1	+	23	3040	c.2953G>A	c.(2953-2955)GAA>AAA	p.E985K	CLCN1_uc011ktc.1_Missense_Mutation_p.E597K	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	985	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GGATGAGGATGAACTGATCCT	0.617													27	92					0	0	1	0	0
FAM131B	9715	broad.mit.edu	37	7	143054022	143054022	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143054022C>T	uc003wct.2	-	6	2326	c.620G>A	c.(619-621)AGC>AAC	p.S207N	FAM131B_uc010loz.2_Missense_Mutation_p.S175N|FAM131B_uc003wcu.3_Missense_Mutation_p.S207N|FAM131B_uc010lpa.2_Missense_Mutation_p.S235N	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	207											0	Melanoma(164;0.205)					GGACTGATCGCTGGCTTCCCA	0.557													14	56					0	0	1	0	0
FAM131B	9715	broad.mit.edu	37	7	143055978	143055978	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143055978C>T	uc003wct.2	-	4	2030	c.324G>A	c.(322-324)AGG>AGA	p.R108R	FAM131B_uc010loz.2_Silent_p.R76R|FAM131B_uc003wcu.3_Silent_p.R108R|FAM131B_uc010lpa.2_Silent_p.R136R|ZYX_uc011ktd.1_5'Flank	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	108											0	Melanoma(164;0.205)					CATCCGTATCCCTGCGCACGG	0.587													12	38					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143096028	143096028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143096028C>T	uc003wcz.2	-	6	1089	c.1002G>A	c.(1000-1002)TCG>TCA	p.S334S		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	334	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				TTCGGGGGGCCGAGGGGGGAC	0.632													6	13					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143098600	143098600	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143098600G>A	uc003wcz.2	-	3	336	c.249C>T	c.(247-249)TCC>TCT	p.S83S		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	83	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				AGATCCAATTGGAGCGAAGCC	0.602													61	219					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143098605	143098605	+	Missense_Mutation	SNP	G	A	A	rs74721927	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143098605G>A	uc003wcz.2	-	3	331	c.244C>T	c.(244-246)CGC>TGC	p.R82C		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	82	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				CAATTGGAGCGAAGCCAGTGG	0.602													20	249					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143104721	143104721	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143104721C>T	uc003wcz.2	-	2	220	c.133G>A	c.(133-135)GAT>AAT	p.D45N	uc003wda.2_5'Flank	NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	45	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				TTTGGGGGATCCAGCAGCCAG	0.562													34	368					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143104761	143104761	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143104761C>T	uc003wcz.2	-	2	180	c.93G>A	c.(91-93)ATG>ATA	p.M31I	uc003wda.2_5'Flank	NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	31	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				TGCTTGTGTCCATCAGAGTAA	0.562													77	192					0	0	1	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141007	143141007	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143141007C>T	uc011ktg.1	+	1	462	c.462C>T	c.(460-462)TTC>TTT	p.F154F	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	154	Extracellular (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TCTCCAGCTTCACCACCATTC	0.463													66	161					0	0	1	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141025	143141025	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143141025C>T	uc011ktg.1	+	1	480	c.480C>T	c.(478-480)TTC>TTT	p.F160F	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	160	Extracellular (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TTCTATTTTTCATAGGCAACC	0.453													55	170					0	0	1	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141359	143141359	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143141359C>T	uc011ktg.1	+	1	814	c.814C>T	c.(814-816)CCA>TCA	p.P272S	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	272	Helical; Name=7; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					AGGTATTTTTCCACCTCTGGA	0.488													67	137					0	0	1	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175137	143175137	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143175137C>T	uc003wdc.1	+	1	172	c.172C>T	c.(172-174)CTG>TTG	p.L58L	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	58	Helical; Name=2; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					CCGCTTCTGCCTGCAGTTGGT	0.567													22	104					0	0	1	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175463	143175463	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143175463G>A	uc003wdc.1	+	1	498	c.498G>A	c.(496-498)GGG>GGA	p.G166G	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	166	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					AATTTTCTGGGAACATGACCT	0.383													17	49					0	0	1	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175576	143175576	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143175576T>A	uc003wdc.1	+	1	611	c.611T>A	c.(610-612)ATT>AAT	p.I204N	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	204	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					ATGCTGTTAATTAATTCTCTG	0.463													24	51					0	0	1	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175682	143175682	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143175682C>T	uc003wdc.1	+	1	717	c.717C>T	c.(715-717)TTC>TTT	p.F239F	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	239	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					TCATCTCCTTCCTCATTCTTT	0.512													43	84					0	0	1	0	0
CTAGE6	340307	broad.mit.edu	37	7	143453470	143453470	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143453470C>T	uc003wdk.3	-	1	1374	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	428	Potential.					integral to membrane					0	Melanoma(164;0.0903)					TCCAGCTGTTCAGTGGCACGG	0.383													41	325					0	0	1	0	0
FAM115A	9747	broad.mit.edu	37	7	143573340	143573340	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143573340G>A	uc003wdo.1	-	2	495	c.362C>T	c.(361-363)TCC>TTC	p.S121F	FAM115A_uc011ktu.1_Intron|FAM115A_uc003wdp.1_Missense_Mutation_p.S121F	NM_014719	NP_055534	Q9Y4C2	F115A_HUMAN	hypothetical protein LOC9747	121											0	Melanoma(164;0.0903)					AACCCCCAGGGAGTCTTTCAC	0.522													52	135					0	0	1	0	0
OR2F2	135948	broad.mit.edu	37	7	143632848	143632848	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143632848G>A	uc011ktv.1	+	1	523	c.523G>A	c.(523-525)GAT>AAT	p.D175N		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					CAAGTTTATTGATCACATATC	0.498													31	72					0	0	1	0	0
OR2F2	135948	broad.mit.edu	37	7	143633044	143633044	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143633044C>A	uc011ktv.1	+	1	719	c.719C>A	c.(718-720)ACG>AAG	p.T240K		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					GCCTTCCACACGTGTGCCTCT	0.522													21	86					7.45023e-12	7.47917e-12	1	1	0
OR2F2	135948	broad.mit.edu	37	7	143633133	143633133	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143633133C>T	uc011ktv.1	+	1	808	c.808C>T	c.(808-810)CAA>TAA	p.Q270*		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					CTCAGTCCTTCAAGAGAAGCT	0.507													41	96					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657088	143657088	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143657088G>A	uc003wds.1	+	1	69	c.25G>A	c.(25-27)GTG>ATG	p.V9M		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					CCAGACTTGGGTGAGTGAATT	0.428													15	159					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657090	143657090	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143657090G>A	uc003wds.1	+	1	71	c.27G>A	c.(25-27)GTG>GTA	p.V9V		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					AGACTTGGGTGAGTGAATTTA	0.428													45	132					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657106	143657106	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143657106C>T	uc003wds.1	+	1	87	c.43C>T	c.(43-45)CTC>TTC	p.L15F		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					ATTTATTCTCCTCGGCCTGTC	0.453													59	136					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657918	143657918	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143657918G>A	uc003wds.1	+	1	899	c.855G>A	c.(853-855)CTG>CTA	p.L285L		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					CACCAATGCTGAACCCCATGA	0.453													21	103					0	0	1	0	0
OR6B1	135946	broad.mit.edu	37	7	143701182	143701183	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143701182_143701183CC>TT	uc003wdt.1	+	1	93_94	c.93_94CC>TT	c.(91-96)TTCCTT>TTTTTT	p.L32F		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TTCTGATATTCCTTGTGGCCTA	0.485													8	49					0	0	1	0	0
OR6B1	135946	broad.mit.edu	37	7	143701557	143701558	+	Silent	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143701557_143701558CC>TT	uc003wdt.1	+	1	468_469	c.468_469CC>TT	c.(466-471)TCCCTG>TCTTTG	p.156_157SL>SL		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	156_157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TTGGCATCTCCCTGGCGAAGAT	0.535													27	46					0	0	1	0	0
OR6B1	135946	broad.mit.edu	37	7	143701978	143701978	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143701978G>A	uc003wdt.1	+	1	889	c.889G>A	c.(889-891)GAA>AAA	p.E297K		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					AGAGGTCAAGGAAGCTCTGAA	0.433													6	59					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143747606	143747606	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143747606C>T	uc011ktw.1	+	1	112	c.112C>T	c.(112-114)CTG>TTG	p.L38L		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CGTCTTCACCCTGCTGGGAAA	0.512													53	100					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143747663	143747663	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143747663C>T	uc011ktw.1	+	1	169	c.169C>T	c.(169-171)CCC>TCC	p.P57S		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					ACTGCACACCCCCATGTACTT	0.507													42	94					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143748099	143748099	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143748099C>T	uc011ktw.1	+	1	605	c.605C>T	c.(604-606)GCT>GTT	p.A202V		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					ATCTTTGCTGCTTCAGTGTTC	0.582													37	219					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143748223	143748223	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143748223C>T	uc011ktw.1	+	1	729	c.729C>T	c.(727-729)TCC>TCT	p.S243S		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CCTGCTCCTCCCACCTTTGCA	0.617													14	179					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143748286	143748286	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143748286C>T	uc011ktw.1	+	1	792	c.792C>T	c.(790-792)TCC>TCT	p.S264S		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CCCCCAAGTCCCGCCACCCTG	0.572													60	131					0	0	1	0	0
OR2A25	392138	broad.mit.edu	37	7	143771318	143771318	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143771318G>A	uc011ktx.1	+	1	6	c.6G>A	c.(4-6)GGG>GGA	p.G2G		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GGGAAATGGGGGGAAATCAGA	0.443													25	98					0	0	1	0	0
OR2A25	392138	broad.mit.edu	37	7	143771847	143771847	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143771847G>A	uc011ktx.1	+	1	535	c.535G>A	c.(535-537)GAA>AAA	p.E179K		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CTTTTTCTGTGAAATTATGGC	0.463													65	161					0	0	1	0	0
OR2A25	392138	broad.mit.edu	37	7	143771993	143771993	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143771993C>T	uc011ktx.1	+	1	681	c.681C>T	c.(679-681)ATC>ATT	p.I227I		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TTCTAAAGATCCAGTCAGGAG	0.478													27	117					0	0	1	0	0
OR2A25	392138	broad.mit.edu	37	7	143772241	143772241	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143772241C>T	uc011ktx.1	+	1	929	c.929C>T	c.(928-930)TCA>TTA	p.S310L		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AAGAGAACTTCATGAAAGCCT	0.398													63	176					0	0	1	0	0
OR2A12	346525	broad.mit.edu	37	7	143793092	143793092	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143793092G>A	uc011kty.1	+	1	892	c.892G>A	c.(892-894)GGG>AGG	p.G298R		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					AGAGGTGAAAGGGGCTCTAAA	0.463													97	200					0	0	1	0	0
OR2A12	346525	broad.mit.edu	37	7	143793109	143793109	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143793109C>T	uc011kty.1	+	1	909	c.909C>T	c.(907-909)GTC>GTT	p.V303V		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					TAAAGAGAGTCCTTTGGAAAC	0.438													55	172					0	0	1	0	0
OR2A2	442361	broad.mit.edu	37	7	143807307	143807307	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143807307C>T	uc011ktz.1	+	1	632	c.632C>T	c.(631-633)TCC>TTC	p.S211F		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					GGGCCTCTTTCCTTGATTCTG	0.527													63	169					0	0	1	0	0
OR2A2	442361	broad.mit.edu	37	7	143807339	143807339	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143807339G>A	uc011ktz.1	+	1	664	c.664G>A	c.(664-666)GGG>AGG	p.G222R		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					GCACATCCTCGGGGCCATCCT	0.517													61	136					0	0	1	0	0
OR2A14	135941	broad.mit.edu	37	7	143827007	143827007	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143827007G>A	uc011kua.1	+	1	802	c.802G>A	c.(802-804)GAG>AAG	p.E268K		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CCATCCTGAGGAGCAGCAGAA	0.542													65	173					0	0	1	0	0
OR2A7	401427	broad.mit.edu	37	7	143955944	143955944	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:143955944C>T	uc011kuc.1	-	1	778	c.778G>A	c.(778-780)GGA>AGA	p.G260R	OR2A9P_uc003wec.1_Intron|uc003wed.2_5'Flank	NM_001005328	NP_001005328	Q96R45	OR2A7_HUMAN	olfactory receptor, family 2, subfamily A,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.14)					TATCTGGGTCCAACATACATG	0.463													20	176					0	0	1	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144060402	144060402	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:144060402G>A	uc003wel.2	+	2	758	c.640G>A	c.(640-642)GAG>AAG	p.E214K	ARHGEF5_uc003wek.2_Missense_Mutation_p.E214K	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	214					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					GCCACCTGAGGAGCTGCAGGA	0.557													46	218					0	0	1	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144062345	144062345	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:144062345G>A	uc003wel.2	+	2	2701	c.2583G>A	c.(2581-2583)AGG>AGA	p.R861R	ARHGEF5_uc003wek.2_Silent_p.R861R|ARHGEF5_uc003wem.2_5'Flank	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	861					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					CCAGGGGGAGGAGCAGGAGCA	0.597													15	134					0	0	1	0	0
NOBOX	135935	broad.mit.edu	37	7	144098263	144098263	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:144098263C>T	uc011kue.1	-	4	720	c.720G>A	c.(718-720)GGG>GGA	p.G240G		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	240					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GGTGGCAGGGCCCCCGGCCTG	0.597													11	17					0	0	1	0	0
NOBOX	135935	broad.mit.edu	37	7	144098412	144098412	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:144098412C>T	uc011kue.1	-	4	571	c.571G>A	c.(571-573)GAG>AAG	p.E191K		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	191					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					ATCTTCACCTCTCCCACTGGG	0.607													9	12					0	0	1	0	0
NOBOX	135935	broad.mit.edu	37	7	144098545	144098545	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:144098545G>A	uc011kue.1	-	4	438	c.438C>T	c.(436-438)GTC>GTT	p.V146V		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	146					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					CTTCTCCAGAGACTGCTGGCG	0.647													19	35					0	0	1	0	0
NOBOX	135935	broad.mit.edu	37	7	144098663	144098663	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:144098663G>A	uc011kue.1	-	4	320	c.320C>T	c.(319-321)GCT>GTT	p.A107V		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	107					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GGGTCCTGCAGCCAGGGGCTT	0.607													7	59					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146536809	146536809	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:146536809G>A	uc003weu.1	+	3	731	c.215G>A	c.(214-216)GGG>GAG	p.G72E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	72	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TCAGGTGCTGGGGGATGGTCT	0.423										HNSCC(39;0.1)			11	50					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146805352	146805352	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:146805352G>A	uc003weu.1	+	5	1180	c.664G>A	c.(664-666)GAA>AAA	p.E222K		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	222	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GTCTGAAAGTGAAGGAGTAAT	0.398										HNSCC(39;0.1)			23	34					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146825865	146825865	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:146825865C>T	uc003weu.1	+	7	1536	c.1020C>T	c.(1018-1020)ATC>ATT	p.I340I		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	340	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TGGAAAGCATCAACTACAATG	0.403										HNSCC(39;0.1)			48	143					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146829430	146829430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:146829430G>A	uc003weu.1	+	8	1693	c.1177G>A	c.(1177-1179)GAC>AAC	p.D393N		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	393	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GCTTAACCAGGACCTGTTCTC	0.478										HNSCC(39;0.1)			30	83					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147259245	147259245	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:147259245C>T	uc003weu.1	+	12	2309	c.1793C>T	c.(1792-1794)TCC>TTC	p.S598F		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	598	Extracellular (Potential).|Fibrinogen C-terminal.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TACGAGCCTTCCTGTGAAGCC	0.448										HNSCC(39;0.1)			10	72					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147926752	147926752	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:147926752C>T	uc003weu.1	+	20	3778	c.3262C>T	c.(3262-3264)CGA>TGA	p.R1088*		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1088	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CTTACAGATTCGATACAACCT	0.443										HNSCC(39;0.1)			13	49					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148112648	148112648	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148112648G>A	uc003weu.1	+	24	4452	c.3936G>A	c.(3934-3936)ATG>ATA	p.M1312I	CNTNAP2_uc003wev.1_Missense_Mutation_p.M89I	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1312	Cytoplasmic (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCGCCATCATGAACAACGACC	0.542										HNSCC(39;0.1)			14	81					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148112693	148112693	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148112693G>A	uc003weu.1	+	24	4497	c.3981G>A	c.(3979-3981)AAG>AAA	p.K1327K	CNTNAP2_uc003wev.1_Silent_p.K104K	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1327	Cytoplasmic (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AAAGCAAAAAGGAATGGCTCA	0.522										HNSCC(39;0.1)			31	48					0	0	1	0	0
PDIA4	9601	broad.mit.edu	37	7	148703040	148703040	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148703040G>A	uc003wff.2	-	8	1519	c.1237C>T	c.(1237-1239)CCC>TCC	p.P413S		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	413					cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			ACCACCAGGGGGCGCCTGGTG	0.627											OREG0018420	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	52					0	0	1	0	0
ZNF786	136051	broad.mit.edu	37	7	148768966	148768966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148768966G>A	uc003wfh.2	-	4	1035	c.898C>T	c.(898-900)CCA>TCA	p.P300S	ZNF786_uc011kuk.1_Missense_Mutation_p.P263S|ZNF786_uc003wfi.2_Missense_Mutation_p.P214S	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	300					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TTGCCGCATGGGGTGCACTGG	0.706													8	23					0	0	1	0	0
ZNF425	155054	broad.mit.edu	37	7	148801858	148801858	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148801858G>A	uc003wfj.2	-	4	1178	c.1105C>T	c.(1105-1107)CGG>TGG	p.R369W		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	369	C2H2-type 6.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GCAGCCTTCCGGGAGAAGCTC	0.577													32	102					0	0	1	0	0
ZNF425	155054	broad.mit.edu	37	7	148809282	148809282	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148809282G>A	uc003wfj.2	-	3	324	c.251C>T	c.(250-252)CCT>CTT	p.P84L		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	84					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			ATCAGTAGGAGGGCTAGTTGT	0.378													16	201					0	0	1	0	0
ZNF282	8427	broad.mit.edu	37	7	148921668	148921668	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148921668C>T	uc003wfm.2	+	8	2050	c.1945C>T	c.(1945-1947)CTG>TTG	p.L649L	ZNF282_uc011kun.1_3'UTR|ZNF282_uc003wfo.2_3'UTR	NM_003575	NP_003566	Q9UDV7	ZN282_HUMAN	zinc finger protein 282	649	C2H2-type 5.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)	Lung(243;0.145)		CAAGGACCACCTGCGCGTGCA	0.607													9	31					0	0	1	0	0
ZNF282	8427	broad.mit.edu	37	7	148921717	148921717	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148921717C>T	uc003wfm.2	+	8	2099	c.1994C>T	c.(1993-1995)CCG>CTG	p.P665L	ZNF282_uc011kun.1_3'UTR|ZNF282_uc003wfo.2_3'UTR	NM_003575	NP_003566	Q9UDV7	ZN282_HUMAN	zinc finger protein 282	665					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)	Lung(243;0.145)		CGGCAGCTCCCGCCGCCTCCT	0.612													4	10					0	0	1	0	0
ZNF212	7988	broad.mit.edu	37	7	148951279	148951279	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148951279A>G	uc003wfp.2	+	5	1357	c.1261A>G	c.(1261-1263)AGG>GGG	p.R421G		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	421					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			CATCCCTTGGAGGAAAAGCCG	0.622													15	33					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	148963691	148963692	+	RNA	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148963691_148963692CC>TT	uc003wfr.3	+	2		c.453_454CC>TT								Homo sapiens cDNA FLJ36716 fis, clone UTERU2010651.																		GGCAAGTGGGCCGTGCTGGGGA	0.629													30	99					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	148975505	148975505	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:148975505C>T	uc003wfr.3	+	5		c.852C>T								Homo sapiens cDNA FLJ36716 fis, clone UTERU2010651.																		CCTCCGTATCCAGAGCACCTC	0.607													12	27					0	0	1	0	0
ZNF777	27153	broad.mit.edu	37	7	149129188	149129189	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149129188_149129189GG>AA	uc003wfv.2	-	6	2337_2338	c.2174_2175CC>TT	c.(2173-2175)CCC>CTT	p.P725L		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	725	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TCTCGCACTCGGGGCACTTGAA	0.673													25	109					0	0	1	0	0
KRBA1	84626	broad.mit.edu	37	7	149428833	149428833	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149428833C>T	uc003wfz.2	+	17	2617	c.2218C>T	c.(2218-2220)CTG>TTG	p.L740L	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_Silent_p.L347L	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	740	Pro-rich.									ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ATCCAGAGGCCTGGAGCTTGG	0.587													4	13					0	0	1	0	0
KRBA1	84626	broad.mit.edu	37	7	149430317	149430317	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149430317C>T	uc003wfz.2	+	18	2673	c.2274C>T	c.(2272-2274)CTC>CTT	p.L758L	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_Silent_p.L365L	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	758	Pro-rich.									ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			AGAGGCTGCTCCCCCAGGGCC	0.642													47	186					0	0	1	0	0
ZNF467	168544	broad.mit.edu	37	7	149468110	149468110	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149468110G>A	uc003wgd.2	-	2	153	c.12C>T	c.(10-12)ACC>ACT	p.T4T	ZNF467_uc003wgc.2_Silent_p.T4T	NM_207336	NP_997219	Q7Z7K2	ZN467_HUMAN	zinc finger protein 467	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGGCCTCCAAGGTCTCTCTCA	0.542													31	91					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149477052	149477052	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149477052C>T	uc010lpk.2	+	11	1229	c.1229C>T	c.(1228-1230)TCC>TTC	p.S410F	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	410					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTGCAGGTTTCCCCTGCTGAG	0.582													11	8					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149477866	149477866	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149477866G>A	uc010lpk.2	+	13	1638	c.1638_splice	c.e13-1	p.C546_splice	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor						cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TGTGCCCACAGCGTGTGCAGG	0.657													5	10					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149481113	149481113	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149481113G>A	uc010lpk.2	+	18	2595	c.2595G>A	c.(2593-2595)GGG>GGA	p.G865G	SSPO_uc010lpl.1_Silent_p.G200G	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	865	TIL 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTCCTCTGGGGCTGCTGTGGG	0.642													6	16					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149482623	149482623	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149482623G>A	uc010lpk.2	+	22	3039	c.3039G>A	c.(3037-3039)CGG>CGA	p.R1013R	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1013	VWFD 3.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCAGTGGGCGGTGCCAGGCAT	0.672													4	8					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149486857	149486857	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149486857C>T	uc010lpk.2	+	31	4631	c.4631C>T	c.(4630-4632)CCC>CTC	p.P1544L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1544					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TTGCCTGGCCCCTCCCCAGGC	0.672													19	38					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149490673	149490673	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149490673G>A	uc010lpk.2	+	41	6047	c.6047G>A	c.(6046-6048)GGG>GAG	p.G2016E		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2016	VWFC 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TTGGTGGAGGGGACGGGAGAA	0.642													16	29					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149493792	149493792	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149493792C>T	uc010lpk.2	+	46	6788	c.6788C>T	c.(6787-6789)TCG>TTG	p.S2263L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2263	LDL-receptor class A 8.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GAGGATGGCTCGGATGAGGAG	0.657													3	17					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149493797	149493797	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149493797G>A	uc010lpk.2	+	46	6793	c.6793G>A	c.(6793-6795)GAG>AAG	p.E2265K		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2265	LDL-receptor class A 8.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TGGCTCGGATGAGGAGGGCTG	0.642													4	13					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149494363	149494363	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149494363C>T	uc010lpk.2	+	47	6834	c.6834C>T	c.(6832-6834)TTC>TTT	p.F2278F		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2278					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TCCCCAGATTCCATTCCACAG	0.652													13	67					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149500563	149500563	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149500563G>A	uc010lpk.2	+	55	7964	c.7964G>A	c.(7963-7965)GGA>GAA	p.G2655E		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2655	TIL 4.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ATACTCCCAGGATGCCGCTGT	0.677													12	38					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149502526	149502526	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149502526C>T	uc010lpk.2	+	58	8339	c.8339C>T	c.(8338-8340)TCC>TTC	p.S2780F		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2780	TSP type-1 7.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCCTGGACTTCCTGGTCCTCC	0.667													27	42					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149503946	149503946	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149503946C>T	uc010lpk.2	+	61	8770	c.8770C>T	c.(8770-8772)CCC>TCC	p.P2924S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2924					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTTCTGCGCCCCCGGCTGCAC	0.662													5	12					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149508081	149508081	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149508081C>T	uc010lpk.2	+	67	9475	c.9475C>T	c.(9475-9477)CGT>TGT	p.R3159C		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3159					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CACTGTGGTTCGTCCATGTGA	0.602													6	49					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149508805	149508805	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149508805G>A	uc010lpk.2	+	68	9544	c.9544G>A	c.(9544-9546)GGT>AGT	p.G3182S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3182					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TTGTGCGGAGGGTAAGGAAGC	0.582													16	123					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149509044	149509044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149509044C>T	uc010lpk.2	+	69	9590	c.9590C>T	c.(9589-9591)GCC>GTC	p.A3197V		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3197	TSP type-1 11.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CAGTGTTCAGCCTCCTGTGGC	0.697													19	39					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149509362	149509363	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149509362_149509363GG>AA	uc010lpk.2	+	70	9760_9761	c.9760_9761GG>AA	c.(9760-9762)GGA>AAA	p.G3254K		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3254	TSP type-1 12.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			AGGAGCTGGGGGATGGGGTCCA	0.703													4	22					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149516467	149516467	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149516467C>T	uc010lpk.2	+	85	11870	c.11870C>T	c.(11869-11871)CCT>CTT	p.P3957L	SSPO_uc010lpm.1_5'Flank|SSPO_uc003wgg.2_5'Flank|SSPO_uc003wgh.2_5'Flank|SSPO_uc003wgi.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3957	TSP type-1 17.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCGTGGGAACCTTGCTCCCGC	0.701													4	21					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149521605	149521605	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149521605C>T	uc010lpk.2	+	96	13684	c.13684C>T	c.(13684-13686)CTC>TTC	p.L4562F	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4562					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCCAACTGGCCTCTCCCCCAC	0.711													16	40					0	0	1	0	0
ATP6V0E2	155066	broad.mit.edu	37	7	149576474	149576474	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149576474C>T	uc003wgr.2	+	4	1370	c.419C>T	c.(418-420)TCG>TTG	p.S140L	ATP6V0E2_uc003wgs.2_Missense_Mutation_p.S117L|ATP6V0E2_uc003wgp.2_3'UTR|ATP6V0E2_uc003wgq.2_RNA|uc003wgt.1_5'Flank	NM_145230	NP_660265	Q8NHE4	VA0E2_HUMAN	ATPase, H+ transporting, V0 subunit isoform 1	Error:Variant_position_missing_in_Q8NHE4_after_alignment					ATP hydrolysis coupled proton transport|cell growth|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport|vacuolar acidification	endosome membrane|integral to membrane|proton-transporting V-type ATPase, V0 domain|vacuole	ATPase activity, coupled to transmembrane movement of ions|hydrogen ion transmembrane transporter activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.00256)			ACAACCCCTTCGTCCGGACCC	0.622													9	17					0	0	1	0	0
ACTR3C	653857	broad.mit.edu	37	7	149983537	149983537	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:149983537G>A	uc003wgu.1	-	5	580	c.390C>T	c.(388-390)ATC>ATT	p.I130I		NM_001040135	NP_001035225	Q9C0K3	ARP3C_HUMAN	actin-related protein 3-beta isoform 2	130					regulation of actin filament polymerization	cytoskeleton	actin binding|ATP binding				0						TGATCGCATTGATACCCGTGT	0.413													15	209					0	0	1	0	0
C7orf29	113763	broad.mit.edu	37	7	150027920	150027920	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150027920G>A	uc003wgy.2	+	1	983	c.427G>A	c.(427-429)GAG>AAG	p.E143K	LRRC61_uc003wgv.2_Intron|LRRC61_uc003wgx.2_Intron|LRRC61_uc003wgw.2_Intron	NM_138434	NP_612443	Q96FA7	CG029_HUMAN	hypothetical protein LOC113763	143										ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			CTCCGGGGTGGAGGGGAGAAG	0.632													12	34					0	0	1	0	0
C7orf29	113763	broad.mit.edu	37	7	150028044	150028044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150028044C>T	uc003wgy.2	+	1	1107	c.551C>T	c.(550-552)TCG>TTG	p.S184L	LRRC61_uc003wgv.2_Intron|LRRC61_uc003wgx.2_Intron|LRRC61_uc003wgw.2_Intron	NM_138434	NP_612443	Q96FA7	CG029_HUMAN	hypothetical protein LOC113763	184										ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			AGCGGGGGCTCGCTGTCCACC	0.622													12	19					0	0	1	0	0
REPIN1	29803	broad.mit.edu	37	7	150069245	150069245	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150069245C>T	uc010lpq.1	+	4	1404	c.915C>T	c.(913-915)CCC>CCT	p.P305P	REPIN1_uc003whd.2_Silent_p.P294P|REPIN1_uc010lpr.1_Silent_p.P362P|REPIN1_uc003whc.2_Silent_p.P305P|REPIN1_uc003whe.2_Silent_p.P305P	NM_013400	NP_037532	Q9BWE0	REPI1_HUMAN	replication initiator 1 isoform 1	305	C2H2-type 8.				DNA replication	nuclear origin of replication recognition complex	DNA binding|zinc ion binding			pancreas(1)	1	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.011)			GGCACAAACCCAACCTGCTGT	0.672													11	16					0	0	1	0	0
REPIN1	29803	broad.mit.edu	37	7	150069302	150069302	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150069302C>T	uc010lpq.1	+	4	1461	c.972C>T	c.(970-972)GCC>GCT	p.A324A	REPIN1_uc003whd.2_Silent_p.A313A|REPIN1_uc010lpr.1_Silent_p.A381A|REPIN1_uc003whc.2_Silent_p.A324A|REPIN1_uc003whe.2_Silent_p.A324A	NM_013400	NP_037532	Q9BWE0	REPI1_HUMAN	replication initiator 1 isoform 1	324					DNA replication	nuclear origin of replication recognition complex	DNA binding|zinc ion binding			pancreas(1)	1	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.011)			CCCAGGCCGCCCCCGGCCCGG	0.731													4	9					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150163996	150163996	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150163996C>T	uc003whj.2	+	2	540	c.210C>T	c.(208-210)TTC>TTT	p.F70F		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	70						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CTGACCTTTTCTCCTCAATAG	0.493													69	137					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150163999	150163999	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150163999C>T	uc003whj.2	+	2	543	c.213C>T	c.(211-213)TCC>TCT	p.S71S		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	71						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		ACCTTTTCTCCTCAATAGCTT	0.502													68	140					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150164371	150164371	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150164371G>A	uc003whj.2	+	2	915	c.585G>A	c.(583-585)ACG>ACA	p.T195T		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	195						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		TGGTGAATACGAACGGAGGAC	0.423													49	92					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171384	150171384	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150171384G>A	uc003whj.2	+	4	1297	c.967G>A	c.(967-969)GGC>AGC	p.G323S		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	323						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CATCTGTACAGGCCCCCATGC	0.428													30	72					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171584	150171584	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150171584C>T	uc003whj.2	+	4	1497	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	389						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		ATGGTCTCATCCAGAAGTGTA	0.428													42	173					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174291	150174291	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150174291C>T	uc003whj.2	+	5	1751	c.1421C>T	c.(1420-1422)ACC>ATC	p.T474I		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	474						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CAGCCAGTCACCAAGACCAGC	0.602													22	43					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174326	150174326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150174326G>A	uc003whj.2	+	5	1786	c.1456G>A	c.(1456-1458)GGA>AGA	p.G486R		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	486						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GACATGGGACGGACAGGAGGT	0.597													24	37					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174830	150174830	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150174830G>A	uc003whj.2	+	5	2290	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	654	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GTCCCAAGCCGAAAAACTCCT	0.463													22	65					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150266998	150266998	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150266998C>T	uc003whl.2	+	2	91	c.9C>T	c.(7-9)GCC>GCT	p.A3A	GIMAP4_uc011kuu.1_5'UTR|GIMAP4_uc011kuv.1_Silent_p.A3A	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	3							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAATGGCAGCCCAATACGGCA	0.512													17	58					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269471	150269471	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150269471C>T	uc003whl.2	+	3	395	c.313C>T	c.(313-315)CGC>TGC	p.R105C	GIMAP4_uc011kuu.1_Intron|GIMAP4_uc011kuv.1_Missense_Mutation_p.R119C	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	105							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGAGATTATTCGCTGCATTCT	0.522													16	64					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269485	150269485	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150269485G>A	uc003whl.2	+	3	409	c.327G>A	c.(325-327)CTG>CTA	p.L109L	GIMAP4_uc011kuu.1_Intron|GIMAP4_uc011kuv.1_Silent_p.L123L	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	109							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCATTCTTCTGACCTCCCCAG	0.507													21	77					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269704	150269704	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150269704C>T	uc003whl.2	+	3	628	c.546C>T	c.(544-546)TTC>TTT	p.F182F	GIMAP4_uc011kuu.1_Silent_p.F43F|GIMAP4_uc011kuv.1_Silent_p.F196F	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	182							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGACATTTTCGGTGACCGCT	0.512													44	92					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269763	150269763	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150269763G>A	uc003whl.2	+	3	687	c.605G>A	c.(604-606)AGG>AAG	p.R202K	GIMAP4_uc011kuu.1_Missense_Mutation_p.R63K|GIMAP4_uc011kuv.1_Missense_Mutation_p.R216K	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	202	Potential.						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGGCCCAGAGGGCACAGTTG	0.547													27	97					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269936	150269936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150269936G>A	uc003whl.2	+	3	860	c.778G>A	c.(778-780)GAA>AAA	p.E260K	GIMAP4_uc011kuu.1_Missense_Mutation_p.E121K|GIMAP4_uc011kuv.1_Missense_Mutation_p.E274K	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	260	Potential.						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGAGGAGTATGAAGAGAAAAT	0.468													6	45					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269982	150269982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150269982G>A	uc003whl.2	+	3	906	c.824G>A	c.(823-825)AGA>AAA	p.R275K	GIMAP4_uc011kuu.1_Missense_Mutation_p.R136K|GIMAP4_uc011kuv.1_Missense_Mutation_p.R289K	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	275	Potential.						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAGGAAAAGAGAAAGAAGCAA	0.463													20	49					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269998	150269998	+	Silent	SNP	G	A	A	rs77995447		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150269998G>A	uc003whl.2	+	3	922	c.840G>A	c.(838-840)GAG>GAA	p.E280E	GIMAP4_uc011kuu.1_Silent_p.E141E|GIMAP4_uc011kuv.1_Silent_p.E294E	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	280	Potential.						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGCAAATGGAGAAGAAACTAG	0.443													22	50					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325003	150325004	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150325003_150325004CC>TT	uc003whn.2	-	3	1106_1107	c.682_683GG>AA	c.(682-684)GGA>AAA	p.G228K	GIMAP6_uc003whm.2_Missense_Mutation_p.G148K	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	228							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTAATAATCTCCTTCGTTTTCC	0.515													71	175					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325055	150325055	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150325055G>A	uc003whn.2	-	3	1055	c.631C>T	c.(631-633)CAA>TAA	p.Q211*	GIMAP6_uc003whm.2_Nonsense_Mutation_p.Q131*	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	211							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCTCGCAGTTGGGCCTCCTGC	0.537													83	182					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325311	150325311	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150325311G>A	uc003whn.2	-	3	799	c.375C>T	c.(373-375)GCC>GCT	p.A125A	GIMAP6_uc003whm.2_Silent_p.A45A	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	125							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCAGGAGCACGGCGTGGGGCC	0.622													32	68					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325338	150325338	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150325338G>A	uc003whn.2	-	3	772	c.348C>T	c.(346-348)ATC>ATT	p.I116I	GIMAP6_uc003whm.2_Silent_p.I36I	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	116							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CGGATAAGACGATGGCTTGGC	0.632													23	76					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325516	150325516	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150325516C>T	uc003whn.2	-	3	594	c.170G>A	c.(169-171)GGA>GAA	p.G57E	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	57							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GATGCTGTTTCCTGTTGCACT	0.542													132	356					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150327197	150327197	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150327197C>T	uc003whn.2	-	2	458	c.34G>A	c.(34-36)GAG>AAG	p.E12K	GIMAP6_uc003whm.2_Silent_p.R6R	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	12							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGGGGATTCTCCTGGGGAATT	0.423													53	136					0	0	1	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389971	150389971	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150389971G>A	uc003who.2	+	3	685	c.597G>A	c.(595-597)ATG>ATA	p.M199I	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	199						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGAACTAATGGACTGTATTG	0.468													34	159					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150416156	150416156	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150416156G>A	uc003whq.2	+	2	108	c.21G>A	c.(19-21)GCG>GCA	p.A7A	GIMAP1_uc003whp.2_Silent_p.A15A	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	7	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGAAGATGGCGACAGATGAAG	0.413													43	94					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417157	150417157	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150417157C>T	uc003whq.2	+	3	152	c.65C>T	c.(64-66)TCC>TTC	p.S22F	GIMAP1_uc003whp.2_Missense_Mutation_p.S30F	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	22	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding	p.S22Y(1)		ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AACGCTCAGTCCCGGCAGGAG	0.527													96	289					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417399	150417399	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150417399C>T	uc003whq.2	+	3	394	c.307C>T	c.(307-309)CAC>TAC	p.H103Y	GIMAP1_uc003whp.2_Missense_Mutation_p.H111Y	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	103	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGAGAGAGGTCACTGCTACCT	0.642													15	49					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417464	150417464	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150417464C>T	uc003whq.2	+	3	459	c.372C>T	c.(370-372)TTC>TTT	p.F124F	GIMAP1_uc003whp.2_Silent_p.F132F	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	124	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGGTCGGTTCACCGCCCAGG	0.627													16	39					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417474	150417474	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150417474G>A	uc003whq.2	+	3	469	c.382G>A	c.(382-384)GAC>AAC	p.D128N	GIMAP1_uc003whp.2_Missense_Mutation_p.D136N	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	128	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CACCGCCCAGGACCAGCAGGC	0.647													7	53					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417779	150417779	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150417779G>A	uc003whq.2	+	3	774	c.687G>A	c.(685-687)CAG>CAA	p.Q229Q	GIMAP1_uc003whp.2_Silent_p.Q237Q	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	229	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGCTGGCGCAGGTGCTGCGCT	0.706													5	11					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439343	150439343	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150439343G>A	uc003whr.1	+	3	468	c.116G>A	c.(115-117)GGG>GAG	p.G39E	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	39	Cytoplasmic (Potential).|GTP (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACAGGCTGCGGGAAAAGTGCC	0.507													31	73					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439392	150439392	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150439392C>T	uc003whr.1	+	3	517	c.165C>T	c.(163-165)TCC>TCT	p.S55S	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	55	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding	p.S55Y(1)		ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGTTTGAGTCCAAGCTGAGGG	0.562													27	62					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439455	150439455	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150439455G>A	uc003whr.1	+	3	580	c.228G>A	c.(226-228)AGG>AGA	p.R76R	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	76	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGAACGGGAGGAAAGTCCTGG	0.582													28	48					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439638	150439638	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150439638C>T	uc003whr.1	+	3	763	c.411C>T	c.(409-411)GTC>GTT	p.V137V	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	137	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGAAAGAGGTCTTTGGGACAG	0.582													34	100					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439945	150439945	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150439945G>A	uc003whr.1	+	3	1070	c.718G>A	c.(718-720)GAA>AAA	p.E240K	GIMAP5_uc010lpu.2_Missense_Mutation_p.E98K	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	240	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCCTGCCAGGAAGACTACAG	0.577													20	67					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150440092	150440092	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150440092C>T	uc003whr.1	+	3	1217	c.865C>T	c.(865-867)CTA>TTA	p.L289L	GIMAP5_uc010lpu.2_Silent_p.L147L	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	289	Helical; Anchor for type IV membrane protein; (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTTTGTTTTTCTATTGTTGTG	0.398													18	59					0	0	1	0	0
TMEM176B	28959	broad.mit.edu	37	7	150488671	150488671	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150488671G>A	uc003wht.3	-	7	927	c.761C>T	c.(760-762)TCA>TTA	p.S254L	TMEM176B_uc003whu.3_Missense_Mutation_p.S254L|TMEM176B_uc003whv.3_Missense_Mutation_p.S217L|TMEM176B_uc003whw.3_Missense_Mutation_p.S254L	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	254					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGGGGCACTGAATTCTCCCC	0.532													19	62					0	0	1	0	0
TMEM176B	28959	broad.mit.edu	37	7	150489234	150489234	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150489234G>A	uc003wht.3	-	6	796	c.630C>T	c.(628-630)TTC>TTT	p.F210F	TMEM176B_uc003whu.3_Silent_p.F210F|TMEM176B_uc003whv.3_Silent_p.F173F|TMEM176B_uc003whw.3_Silent_p.F210F	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	210	Helical; (Potential).				cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGACAGCCAGGAACAGGGCAC	0.522													15	61					0	0	1	0	0
TMEM176B	28959	broad.mit.edu	37	7	150490215	150490215	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150490215C>T	uc003wht.3	-	5	727	c.561G>A	c.(559-561)TGG>TGA	p.W187*	TMEM176B_uc003whu.3_Nonsense_Mutation_p.W187*|TMEM176B_uc003whv.3_Nonsense_Mutation_p.W150*|TMEM176B_uc003whw.3_Nonsense_Mutation_p.W187*	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	187					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTCCTTCTGCCATTGGTTCT	0.527													15	92					0	0	1	0	0
TMEM176A	55365	broad.mit.edu	37	7	150498668	150498668	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150498668C>T	uc003whx.1	+	2	108	c.30C>T	c.(28-30)GCC>GCT	p.A10A	TMEM176B_uc003wht.3_5'Flank|TMEM176B_uc003whu.3_5'Flank|TMEM176B_uc003whv.3_5'Flank|TMEM176B_uc003whw.3_5'Flank	NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	10						integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ATGAGATGGCCCCGGAGGCCC	0.607													21	47					0	0	1	0	0
TMEM176A	55365	broad.mit.edu	37	7	150499314	150499314	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150499314C>T	uc003whx.1	+	3	264	c.186C>T	c.(184-186)ATC>ATT	p.I62I	TMEM176B_uc003whu.3_5'Flank|TMEM176B_uc003whv.3_5'Flank|TMEM176B_uc003whw.3_5'Flank	NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	62	Helical; (Potential).					integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGATGCAGATCGTGCTGGGGA	0.562													17	48					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150553935	150553935	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150553935G>A	uc003why.1	+	3	4595	c.377G>A	c.(376-378)CGA>CAA	p.R126Q	ABP1_uc003whz.1_Missense_Mutation_p.R126Q|ABP1_uc003wia.1_Missense_Mutation_p.R126Q	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	126					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	TGCTACATGCGAGCACTGTCC	0.637													36	84					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150554705	150554705	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150554705C>T	uc003why.1	+	3	5365	c.1147C>T	c.(1147-1149)CAT>TAT	p.H383Y	ABP1_uc003whz.1_Missense_Mutation_p.H383Y|ABP1_uc003wia.1_Missense_Mutation_p.H383Y	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	383					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	CAGCGTCACTCATGAGTTAGC	0.617													36	112					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150647386	150647386	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150647386C>T	uc003wic.2	-	9	2281	c.2268G>A	c.(2266-2268)ATG>ATA	p.M756I	KCNH2_uc003wib.2_Missense_Mutation_p.M416I|KCNH2_uc011kux.1_Missense_Mutation_p.M660I|KCNH2_uc003wid.2_Missense_Mutation_p.M416I|KCNH2_uc003wie.2_Missense_Mutation_p.M756I	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	756	Cytoplasmic (Potential).|cNMP.				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TCTTGAACTTCATGGCCAGGG	0.637													8	85					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150647458	150647458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150647458C>T	uc003wic.2	-	9	2209	c.2196G>A	c.(2194-2196)CTG>CTA	p.L732L	KCNH2_uc003wib.2_Silent_p.L392L|KCNH2_uc011kux.1_Silent_p.L636L|KCNH2_uc003wid.2_Silent_p.L392L|KCNH2_uc003wie.2_Silent_p.L732L	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	732	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GTGAGCGGTTCAGGTGCAGGC	0.657													28	55					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150648860	150648860	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150648860G>A	uc003wic.2	-	7	1634	c.1621C>T	c.(1621-1623)CGC>TGC	p.R541C	KCNH2_uc003wib.2_Missense_Mutation_p.R201C|KCNH2_uc011kux.1_Missense_Mutation_p.R445C|KCNH2_uc003wid.2_Missense_Mutation_p.R201C|KCNH2_uc003wie.2_Missense_Mutation_p.R541C	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	541	Helical; Voltage-sensor; Name=Segment S4; (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TCTGAGTAGCGATCCAGCTTC	0.642													7	32					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150656705	150656705	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150656705G>A	uc003wic.2	-	3	440	c.427C>T	c.(427-429)CAT>TAT	p.H143Y	KCNH2_uc011kux.1_Missense_Mutation_p.H47Y|KCNH2_uc003wie.2_Missense_Mutation_p.H143Y	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	143	Cytoplasmic (Potential).|PAC.				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TTGGTGTCATGAGCCGGGGAC	0.592													25	65					0	0	1	0	0
NOS3	4846	broad.mit.edu	37	7	150693611	150693611	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150693611C>T	uc003wif.2	+	4	686	c.390C>T	c.(388-390)TTC>TTT	p.F130F	NOS3_uc011kuy.1_Intron|NOS3_uc011kuz.1_Silent_p.F130F|NOS3_uc011kva.1_Silent_p.F130F|NOS3_uc011kvb.1_Silent_p.F130F	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	130	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CCCGGGACTTCATCAACCAGT	0.507													13	23					0	0	1	0	0
NOS3	4846	broad.mit.edu	37	7	150696415	150696415	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150696415G>A	uc003wif.2	+	9	1390	c.1094G>A	c.(1093-1095)AGG>AAG	p.R365K	NOS3_uc011kuy.1_Missense_Mutation_p.R159K|NOS3_uc011kuz.1_Missense_Mutation_p.R365K|NOS3_uc011kva.1_Missense_Mutation_p.R365K|NOS3_uc011kvb.1_Missense_Mutation_p.R365K	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	365	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	ATCGGCACGAGGAACCTGTGT	0.627													41	158					0	0	1	0	0
NOS3	4846	broad.mit.edu	37	7	150698983	150698983	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150698983C>T	uc003wif.2	+	13	1873	c.1577C>T	c.(1576-1578)TCC>TTC	p.S526F	NOS3_uc011kuy.1_Missense_Mutation_p.S320F|NOS3_uc011kuz.1_Missense_Mutation_p.S526F|NOS3_uc011kva.1_Missense_Mutation_p.S526F|NOS3_uc011kvb.1_Missense_Mutation_p.S526F	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	526	Flavodoxin-like.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CTGTATGGCTCCGAGACCGGC	0.652													27	49					0	0	1	0	0
ATG9B	285973	broad.mit.edu	37	7	150714259	150714259	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150714259C>T	uc011kvc.1	-	9	2229	c.2153G>A	c.(2152-2154)TGG>TAG	p.W718*	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	718	Cytoplasmic (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGGGGGCGCCAGAGTGGATG	0.652													9	18					0	0	1	0	0
ATG9B	285973	broad.mit.edu	37	7	150715528	150715528	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150715528G>A	uc011kvc.1	-	7	1801	c.1725C>T	c.(1723-1725)TTC>TTT	p.F575F	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	575	Lumenal (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTTCCGGAATGAAAGACCTGA	0.677											OREG0018444	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	48					0	0	1	0	0
ATG9B	285973	broad.mit.edu	37	7	150715859	150715859	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150715859G>A	uc011kvc.1	-	6	1642	c.1566C>T	c.(1564-1566)CCC>CCT	p.P522P	ATG9B_uc003wig.3_Intron	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	522	Lumenal (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCGTGCGCAGGGGCGCGGGGG	0.741													3	6					0	0	1	0	0
ATG9B	285973	broad.mit.edu	37	7	150721387	150721387	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150721387C>T	uc011kvc.1	-	1	200	c.124G>A	c.(124-126)GGA>AGA	p.G42R	ATG9B_uc003wig.3_5'Flank	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	42	Pro-rich.|Cytoplasmic (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCCCCAGGTCCCCGGCATGAA	0.672													4	9					0	0	1	0	0
ABCB8	11194	broad.mit.edu	37	7	150731895	150731895	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150731895C>T	uc003wil.3	+	6	888	c.795C>T	c.(793-795)TCC>TCT	p.S265S	ABCB8_uc003wii.2_Silent_p.S285S|ABCB8_uc003wij.3_Silent_p.S248S|ABCB8_uc010lpw.1_Silent_p.S67S|ABCB8_uc010lpx.2_Silent_p.S248S|ABCB8_uc011kvd.1_Silent_p.S160S|ABCB8_uc003wim.3_Silent_p.S43S|ABCB8_uc003wik.3_Silent_p.S248S	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	265	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTAAGTCATCCTTCAAGCTTG	0.572													10	44					0	0	1	0	0
ABCB8	11194	broad.mit.edu	37	7	150739141	150739141	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150739141G>A	uc003wil.3	+	15	1855	c.1762G>A	c.(1762-1764)GCG>ACG	p.A588T	ABCB8_uc010lpw.1_3'UTR|ABCB8_uc010lpx.2_Missense_Mutation_p.A571T|ABCB8_uc011kvd.1_Missense_Mutation_p.A483T|ABCB8_uc003wim.3_Missense_Mutation_p.A366T|ABCB8_uc003wik.3_Missense_Mutation_p.A571T	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	588	ABC transporter.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CGCCCGGGAAGCGAATGCTCA	0.612													42	52					0	0	1	0	0
SLC4A2	6522	broad.mit.edu	37	7	150768843	150768843	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150768843C>T	uc003wit.3	+	15	2515	c.2259C>T	c.(2257-2259)GTC>GTT	p.V753V	SLC4A2_uc011kve.1_Silent_p.V744V|SLC4A2_uc003wiu.3_Silent_p.V739V|SLC4A2_uc003wiv.3_5'Flank	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	753	Membrane (anion exchange).|Helical; (Potential).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGGCGTGGTCTTCTGCCTGC	0.622													41	106					0	0	1	0	0
AGAP3	116988	broad.mit.edu	37	7	150835336	150835336	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150835336C>T	uc003wjg.1	+	12	1605	c.1602C>T	c.(1600-1602)TCC>TCT	p.S534S	AGAP3_uc003wje.1_Intron|AGAP3_uc003wjj.1_Intron|AGAP3_uc003wjk.1_5'Flank	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	498	PH.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						GCTCCTGCTCCGTTTCCAGCG	0.697													8	14					0	0	1	0	0
AGAP3	116988	broad.mit.edu	37	7	150839020	150839020	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150839020C>T	uc003wjg.1	+	14	1843	c.1840C>T	c.(1840-1842)CTC>TTC	p.L614F	AGAP3_uc003wje.1_Missense_Mutation_p.L283F|AGAP3_uc003wjj.1_Missense_Mutation_p.L113F|AGAP3_uc003wjk.1_Missense_Mutation_p.L32F	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	578	PH.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						GGTGGTGTCCCTCACTGGGCA	0.617													8	94					0	0	1	0	0
ASB10	136371	broad.mit.edu	37	7	150878191	150878191	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150878191G>A	uc003wjm.1	-	3	1200	c.1074C>T	c.(1072-1074)CTC>CTT	p.L358L	ASB10_uc003wjl.1_Silent_p.L358L|ASB10_uc003wjn.1_Silent_p.L298L	NM_001142459	NP_001135931	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	313	ANK 6.				intracellular signal transduction						0			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CACAGGACAGGAGCAGCTCCA	0.672													4	30					0	0	1	0	0
ASB10	136371	broad.mit.edu	37	7	150878387	150878387	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150878387C>T	uc003wjm.1	-	3	1004	c.878G>A	c.(877-879)GGC>GAC	p.G293D	ASB10_uc003wjl.1_Missense_Mutation_p.G293D|ASB10_uc003wjn.1_Missense_Mutation_p.G233D	NM_001142459	NP_001135931	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	248	ANK 5.				intracellular signal transduction						0			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGGGTCCAGCCTTCGGCATT	0.657													10	28					0	0	1	0	0
ABCF2	10061	broad.mit.edu	37	7	150915701	150915701	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:150915701G>A	uc003wjp.2	-	10	1284	c.1173C>T	c.(1171-1173)ATC>ATT	p.I391I	ABCF2_uc003wjo.1_Silent_p.I391I	NM_007189	NP_009120	Q9UG63	ABCF2_HUMAN	ATP-binding cassette, sub-family F, member 2	391						ATP-binding cassette (ABC) transporter complex|mitochondrial envelope	ATP binding|ATPase activity|transporter activity			central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAGGTGGAGGGATCTTGCCAC	0.408													10	67					0	0	1	0	0
WDR86	349136	broad.mit.edu	37	7	151097249	151097249	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151097249C>T	uc003wkb.2	-	2	691	c.242G>A	c.(241-243)AGG>AAG	p.R81K	WDR86_uc003wka.2_Missense_Mutation_p.R39K|WDR86_uc011kvk.1_Missense_Mutation_p.R81K|WDR86_uc003wkc.2_5'UTR	NM_198285	NP_938026	Q86TI4	WDR86_HUMAN	WD repeat domain 86	81	WD 2.										0			OV - Ovarian serous cystadenocarcinoma(82;0.00419)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CACGTCCCACCTCCTGATGGT	0.607													6	15					0	0	1	0	0
GALNTL5	168391	broad.mit.edu	37	7	151705022	151705022	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151705022C>T	uc003wkp.2	+	7	1242	c.1019C>T	c.(1018-1020)TCA>TTA	p.S340L	GALNTL5_uc003wkq.2_Missense_Mutation_p.S91L|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.S229L	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	340	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		TTGGAACTTTCACTAAGGGTA	0.328													33	94					0	0	1	0	0
GALNTL5	168391	broad.mit.edu	37	7	151711762	151711762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151711762C>T	uc003wkp.2	+	8	1283	c.1060C>T	c.(1060-1062)CCC>TCC	p.P354S	GALNTL5_uc003wkq.2_Missense_Mutation_p.P105S|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.P243S	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	354	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		CTTTATAATCCCCTGCTCTCG	0.398													34	96					0	0	1	0	0
GALNT11	63917	broad.mit.edu	37	7	151791331	151791331	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151791331C>T	uc010lqg.1	+	2	249	c.19C>T	c.(19-21)CGG>TGG	p.R7W	GALNT11_uc011kvm.1_Intron|GALNT11_uc003wku.2_Missense_Mutation_p.R7W|GALNT11_uc003wkv.1_Missense_Mutation_p.R7W|GALNT11_uc011kvn.1_RNA	NM_022087	NP_071370	Q8NCW6	GLT11_HUMAN	N-acetylgalactosaminyltransferase 11	7	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.214)	OV - Ovarian serous cystadenocarcinoma(82;0.00168)	UCEC - Uterine corpus endometrioid carcinoma (81;0.177)|BRCA - Breast invasive adenocarcinoma(188;0.0932)		TGTCACAGTTCGGTATTTCTG	0.368													141	297					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151835975	151835975	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151835975G>A	uc003wla.2	-	58	14768	c.14549C>T	c.(14548-14550)TCG>TTG	p.S4850L	MLL3_uc003wkz.2_Missense_Mutation_p.S3964L|MLL3_uc003wkx.2_Missense_Mutation_p.S1008L|MLL3_uc003wky.2_Missense_Mutation_p.S2410L	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4850	SET.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGGTGCACACGAATGGTTGAT	0.398			N		medulloblastoma								32	118					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151878029	151878029	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151878029G>A	uc003wla.2	-	36	7135	c.6916C>T	c.(6916-6918)CCA>TCA	p.P2306S	MLL3_uc003wkz.2_Missense_Mutation_p.P1367S|MLL3_uc003wky.2_5'Flank	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2306					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGAGATCTTGGAGTCATTGGA	0.512			N		medulloblastoma								31	67					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151891543	151891543	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151891543C>T	uc003wla.2	-	29	4708	c.4489G>A	c.(4489-4491)GAC>AAC	p.D1497N	MLL3_uc003wkz.2_Missense_Mutation_p.D558N	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1497					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ACCATTTTGTCTAGTTCAGGA	0.373			N		medulloblastoma								13	117					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151927040	151927040	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151927040G>A	uc003wla.2	-	18	3163	c.2944C>T	c.(2944-2946)CAG>TAG	p.Q982*	MLL3_uc003wkz.2_Nonsense_Mutation_p.Q43*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	982	PHD-type 4.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGGTAACACTGACCACACTGA	0.343			N		medulloblastoma								26	442					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151945118	151945118	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151945118G>A	uc003wla.2	-	14	2620	c.2401C>T	c.(2401-2403)CCT>TCT	p.P801S		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	801					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGAGCTGAAGGGTAATTATGC	0.433			N		medulloblastoma								43	809					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151945426	151945426	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151945426G>A	uc003wla.2	-	14	2312	c.2093C>T	c.(2092-2094)ACC>ATC	p.T698I		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	698					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGACACTAAGGTTTCTAGTGG	0.403			N		medulloblastoma								27	75					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151970819	151970819	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:151970819G>A	uc003wla.2	-	7	1202	c.983C>T	c.(982-984)CCA>CTA	p.P328L		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	328					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AATGTGTTCTGGACAAAGCAG	0.378			N		medulloblastoma								18	381					0	0	1	0	0
ACTR3B	57180	broad.mit.edu	37	7	152520487	152520487	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:152520487C>T	uc003wle.1	+	8	862	c.745C>T	c.(745-747)CCC>TCC	p.P249S	ACTR3B_uc003wlf.1_Missense_Mutation_p.P249S|ACTR3B_uc003wlg.1_Missense_Mutation_p.P161S|ACTR3B_uc011kvp.1_Missense_Mutation_p.P161S	NM_020445	NP_065178	Q9P1U1	ARP3B_HUMAN	actin-related protein 3-beta isoform 1	249					regulation of actin filament polymerization	cell projection|cytoplasm|cytoskeleton	actin binding|ATP binding				0		all_hematologic(28;0.0592)|Prostate(32;0.191)	OV - Ovarian serous cystadenocarcinoma(82;0.0287)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0434)		TGATGTGGATCCCCGGAAGTG	0.418													71	136					0	0	1	0	0
DPP6	1804	broad.mit.edu	37	7	154667811	154667811	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:154667811G>A	uc003wlk.2	+	20	2207	c.2078_splice	c.e20+1	p.R693_splice	DPP6_uc003wli.2_Splice_Site_p.R629_splice|DPP6_uc003wlm.2_Splice_Site_p.R631_splice|DPP6_uc011kvq.1_Splice_Site_p.R586_splice	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1						cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			AGGCCGTGCGGTGAGCACCCG	0.677													4	18					0	0	1	0	0
DPP6	1804	broad.mit.edu	37	7	154681001	154681001	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:154681001G>A	uc003wlk.2	+	24	2453	c.2324G>A	c.(2323-2325)CGA>CAA	p.R775Q	DPP6_uc003wli.2_Missense_Mutation_p.R711Q|DPP6_uc003wlm.2_Missense_Mutation_p.R713Q|DPP6_uc011kvq.1_Missense_Mutation_p.R668Q	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	775	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			GTAGCCCATCGAGTCTCCGCG	0.542													9	31					0	0	1	0	0
DPP6	1804	broad.mit.edu	37	7	154684136	154684136	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:154684136G>A	uc003wlk.2	+	26	2673	c.2544G>A	c.(2542-2544)AGG>AGA	p.R848R	DPP6_uc003wli.2_Silent_p.R784R|DPP6_uc003wlm.2_Silent_p.R786R|DPP6_uc011kvq.1_Silent_p.R741R	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	848	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			AATGCTTCAGGATCCAGGACA	0.502													51	99					0	0	1	0	0
PAXIP1	22976	broad.mit.edu	37	7	154738116	154738116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:154738116G>A	uc003wlp.2	-	20	3196	c.3153C>T	c.(3151-3153)TTC>TTT	p.F1051F	LOC100132707_uc011kvr.1_RNA|LOC100132707_uc003wlo.2_RNA|PAXIP1_uc003wlq.1_Silent_p.F1017F|PAXIP1_uc011kvs.1_Silent_p.F1015F	NM_007349	NP_031375	Q6ZW49	PAXI1_HUMAN	PAX interacting protein 1	1051	Interaction with TP53BP1.|BRCT 6.				DNA damage response, signal transduction by p53 class mediator|DNA recombination|DNA repair|histone H3-K4 methylation|positive regulation of histone acetylation|positive regulation of histone H3-K36 methylation|positive regulation of histone H3-K4 methylation|positive regulation of isotype switching|positive regulation of protein ubiquitination|positive regulation of transcription initiation from RNA polymerase II promoter|response to ionizing radiation|transcription, DNA-dependent	histone methyltransferase complex|nuclear matrix				lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0296)	UCEC - Uterine corpus endometrioid carcinoma (81;0.178)		CAGTCAGAACGAACTCTGCAT	0.433													68	131					0	0	1	0	0
PAXIP1	22976	broad.mit.edu	37	7	154767930	154767930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:154767930G>A	uc003wlp.2	-	6	593	c.550C>T	c.(550-552)CGT>TGT	p.R184C	PAXIP1_uc003wlq.1_Missense_Mutation_p.R150C|PAXIP1_uc011kvs.1_Missense_Mutation_p.R148C|PAXIP1_uc003wlr.1_Missense_Mutation_p.R93C	NM_007349	NP_031375	Q6ZW49	PAXI1_HUMAN	PAX interacting protein 1	184					DNA damage response, signal transduction by p53 class mediator|DNA recombination|DNA repair|histone H3-K4 methylation|positive regulation of histone acetylation|positive regulation of histone H3-K36 methylation|positive regulation of histone H3-K4 methylation|positive regulation of isotype switching|positive regulation of protein ubiquitination|positive regulation of transcription initiation from RNA polymerase II promoter|response to ionizing radiation|transcription, DNA-dependent	histone methyltransferase complex|nuclear matrix				lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0296)	UCEC - Uterine corpus endometrioid carcinoma (81;0.178)		ATAATCAGACGAGGATGATAA	0.274													8	38					0	0	1	0	0
HTR5A	3361	broad.mit.edu	37	7	154862651	154862651	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:154862651C>T	uc003wlu.1	+	1	106	c.42C>T	c.(40-42)ACC>ACT	p.T14T	uc011kvt.1_Intron|uc003wlt.2_Intron	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	14	Extracellular (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CCCTCTCCACCCCCTCCCCTT	0.587													49	131					0	0	1	0	0
HTR5A	3361	broad.mit.edu	37	7	154876048	154876048	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:154876048C>T	uc003wlu.1	+	2	989	c.925C>T	c.(925-927)CCC>TCC	p.P309S		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	309	Extracellular (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		GCTCATCAGTCCCCTCTGCTC	0.572													46	143					0	0	1	0	0
INSIG1	3638	broad.mit.edu	37	7	155094485	155094485	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:155094485C>T	uc003wly.2	+	5	944	c.733C>T	c.(733-735)CGT>TGT	p.R245C	INSIG1_uc011kvu.1_Missense_Mutation_p.R93C|INSIG1_uc003wlz.2_Silent_p.F147F	NM_005542	NP_005533	O15503	INSI1_HUMAN	insulin induced gene 1 isoform 1	245	Helical; (Potential).				cell proliferation|ER-nuclear sterol response pathway	endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTCTATATTCGTTCTTGGCT	0.418													58	112					0	0	1	0	0
RBM33	155435	broad.mit.edu	37	7	155567726	155567726	+	Silent	SNP	C	T	T	rs139259621		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:155567726C>T	uc010lqk.1	+	18	3872	c.3504C>T	c.(3502-3504)ATC>ATT	p.I1168I	RBM33_uc003wmg.2_Silent_p.I104I	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	1168	RRM.						nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		TGGCCCTGATCGTGGAGTGAG	0.502													14	42					0	0	1	0	0
LMBR1	64327	broad.mit.edu	37	7	156518469	156518469	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:156518469G>A	uc003wmw.3	-	13	1271	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	LMBR1_uc003wmv.3_Silent_p.I200I|LMBR1_uc003wmx.3_Silent_p.I200I|LMBR1_uc010lqn.2_Silent_p.I393I|LMBR1_uc011kvx.1_Silent_p.I331I	NM_022458	NP_071903	Q8WVP7	LMBR1_HUMAN	limb region 1 protein	352	Helical; (Potential).					integral to membrane	receptor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.208)		AAATCAAAATGATTTCAAGCG	0.403													24	53					0	0	1	0	0
UBE3C	9690	broad.mit.edu	37	7	156956528	156956528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:156956528C>T	uc010lqs.2	+	2	403	c.91C>T	c.(91-93)CGT>TGT	p.R31C	UBE3C_uc003wnf.2_Intron|UBE3C_uc003wng.2_Missense_Mutation_p.R31C	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	31	Cis-determinant of acceptor ubiquitin- binding.				protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		TCTTTTACATCGTACTCAGGA	0.313													30	75					0	0	1	0	0
UBE3C	9690	broad.mit.edu	37	7	157041160	157041160	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157041160C>T	uc010lqs.2	+	19	2892	c.2580C>T	c.(2578-2580)GCC>GCT	p.A860A	UBE3C_uc003wni.3_Silent_p.A223A	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	860	HECT.				protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		ACCACCTCGCCTCCCTAGACC	0.512													21	173					0	0	1	0	0
DNAJB6	10049	broad.mit.edu	37	7	157160088	157160088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157160088C>T	uc003wnk.2	+	5	411	c.257C>T	c.(256-258)CCA>CTA	p.P86L	DNAJB6_uc003wnj.2_Missense_Mutation_p.P86L|DNAJB6_uc003wnl.2_Missense_Mutation_p.P73L|DNAJB6_uc011kvy.1_Missense_Mutation_p.P37L|DNAJB6_uc011kvz.1_Missense_Mutation_p.P86L|DNAJB6_uc010lqt.2_Missense_Mutation_p.P86L	NM_058246	NP_490647	O75190	DNJB6_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 6	86	Gly/Phe-rich.|Interaction with HSP70.				intermediate filament organization|negative regulation of caspase activity|protein folding|response to unfolded protein	nucleus|perinuclear region of cytoplasm	ATPase activator activity|chaperone binding|heat shock protein binding|unfolded protein binding			ovary(2)	2	all_neural(206;0.181)	all_epithelial(9;0.000606)|all_hematologic(28;0.00287)|Acute lymphoblastic leukemia(9;0.0647)|Ovarian(593;0.196)	OV - Ovarian serous cystadenocarcinoma(82;0.00399)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		TTTGACAGTCCATTTGAATTT	0.363													19	177					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157414071	157414071	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157414071G>A	uc003wno.2	-	15	2448	c.2327C>T	c.(2326-2328)TCC>TTC	p.S776F	PTPRN2_uc003wnp.2_Missense_Mutation_p.S759F|PTPRN2_uc003wnq.2_Missense_Mutation_p.S747F|PTPRN2_uc003wnr.2_Missense_Mutation_p.S738F|PTPRN2_uc011kwa.1_Missense_Mutation_p.S799F	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	776	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CACGGCCAGGGAGCGGTTCTT	0.662													75	207					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157475585	157475585	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157475585G>A	uc003wno.2	-	13	1954	c.1833C>T	c.(1831-1833)GAC>GAT	p.D611D	PTPRN2_uc003wnp.2_Silent_p.D594D|PTPRN2_uc003wnq.2_Silent_p.D582D|PTPRN2_uc003wnr.2_Silent_p.D573D|PTPRN2_uc011kwa.1_Silent_p.D634D	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	611	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		ACTTGGTGGAGTCTTCTTGCT	0.572													18	33					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157926512	157926512	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157926512C>T	uc003wno.2	-	9	1534	c.1413G>A	c.(1411-1413)GGG>GGA	p.G471G	PTPRN2_uc003wnp.2_Silent_p.G454G|PTPRN2_uc003wnq.2_Silent_p.G471G|PTPRN2_uc003wnr.2_Silent_p.G433G|PTPRN2_uc011kwa.1_Silent_p.G494G	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	471	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TTTGGAGCTCCCCAAACGCAG	0.637													25	71					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157931073	157931073	+	Nonsense_Mutation	SNP	G	A	A	rs142009346	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157931073G>A	uc003wno.2	-	7	1166	c.1045C>T	c.(1045-1047)CGA>TGA	p.R349*	PTPRN2_uc003wnp.2_Nonsense_Mutation_p.R332*|PTPRN2_uc003wnq.2_Nonsense_Mutation_p.R349*|PTPRN2_uc003wnr.2_Nonsense_Mutation_p.R311*|PTPRN2_uc011kwa.1_Nonsense_Mutation_p.R372*	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	349	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGGCTGCCTCGAGCTACTCCA	0.672													33	80					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157931190	157931190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157931190G>A	uc003wno.2	-	7	1049	c.928C>T	c.(928-930)CTC>TTC	p.L310F	PTPRN2_uc003wnp.2_Missense_Mutation_p.L293F|PTPRN2_uc003wnq.2_Missense_Mutation_p.L310F|PTPRN2_uc003wnr.2_Missense_Mutation_p.L272F|PTPRN2_uc011kwa.1_Missense_Mutation_p.L333F	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	310	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TCCTTCAGGAGGGTATGAATC	0.617													23	61					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157931196	157931196	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157931196G>A	uc003wno.2	-	7	1043	c.922C>T	c.(922-924)CAT>TAT	p.H308Y	PTPRN2_uc003wnp.2_Missense_Mutation_p.H291Y|PTPRN2_uc003wnq.2_Missense_Mutation_p.H308Y|PTPRN2_uc003wnr.2_Missense_Mutation_p.H270Y|PTPRN2_uc011kwa.1_Missense_Mutation_p.H331Y	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	308	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		AGGAGGGTATGAATCCGTGCT	0.617													21	61					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959797	157959797	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157959797G>A	uc003wno.2	-	6	857	c.736C>T	c.(736-738)CTC>TTC	p.L246F	PTPRN2_uc003wnp.2_Missense_Mutation_p.L229F|PTPRN2_uc003wnq.2_Missense_Mutation_p.L246F|PTPRN2_uc003wnr.2_Missense_Mutation_p.L208F|PTPRN2_uc011kwa.1_Missense_Mutation_p.L269F	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	246	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TAGGCACTGAGGGCCGCCATC	0.667													5	29					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959834	157959834	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157959834C>T	uc003wno.2	-	6	820	c.699G>A	c.(697-699)GTG>GTA	p.V233V	PTPRN2_uc003wnp.2_Silent_p.V216V|PTPRN2_uc003wnq.2_Silent_p.V233V|PTPRN2_uc003wnr.2_Silent_p.V195V|PTPRN2_uc011kwa.1_Silent_p.V256V	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	233	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CACCACTGTCCACCTTAGGGC	0.697													18	36					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959893	157959893	+	Missense_Mutation	SNP	C	T	T	rs144856548	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157959893C>T	uc003wno.2	-	6	761	c.640G>A	c.(640-642)GAG>AAG	p.E214K	PTPRN2_uc003wnp.2_Missense_Mutation_p.E197K|PTPRN2_uc003wnq.2_Missense_Mutation_p.E214K|PTPRN2_uc003wnr.2_Missense_Mutation_p.E176K|PTPRN2_uc011kwa.1_Missense_Mutation_p.E237K	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	214	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		AGGAGGTCCTCGCGGAGCTGG	0.647													20	51					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157985168	157985168	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:157985168C>T	uc003wno.2	-	5	521	c.400G>A	c.(400-402)GGC>AGC	p.G134S	PTPRN2_uc003wnp.2_Missense_Mutation_p.G117S|PTPRN2_uc003wnq.2_Missense_Mutation_p.G134S|PTPRN2_uc003wnr.2_Missense_Mutation_p.G96S|PTPRN2_uc011kwa.1_Missense_Mutation_p.G157S	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	134	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTCTCGCTGCCAACGCTGTGT	0.637													18	86					0	0	1	0	0
NCAPG2	54892	broad.mit.edu	37	7	158472759	158472759	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:158472759G>A	uc003wnv.1	-	11	1184	c.1039C>T	c.(1039-1041)CGA>TGA	p.R347*	NCAPG2_uc010lqu.1_Nonsense_Mutation_p.R139*|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Nonsense_Mutation_p.R347*|NCAPG2_uc011kwe.1_Nonsense_Mutation_p.R347*	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	347					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		GCATTTGATCGAACTTCAGAG	0.363													14	114					0	0	1	0	0
ESYT2	57488	broad.mit.edu	37	7	158528282	158528282	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:158528282G>A	uc003wob.1	-	20	2564	c.2498C>T	c.(2497-2499)TCG>TTG	p.S833L	ESYT2_uc003wny.1_RNA|ESYT2_uc003wnz.1_Missense_Mutation_p.S272L|ESYT2_uc003woa.1_Missense_Mutation_p.S410L	NM_020728	NP_065779	A0FGR8	ESYT2_HUMAN	family with sequence similarity 62 (C2 domain	861	C2 3.					integral to membrane|plasma membrane				central_nervous_system(2)|kidney(1)	3						TTCTGGTAACGAAACACTGAA	0.438													56	124					0	0	1	0	0
ESYT2	57488	broad.mit.edu	37	7	158536344	158536344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:158536344G>A	uc003wob.1	-	16	1817	c.1751C>T	c.(1750-1752)TCC>TTC	p.S584F	ESYT2_uc003woc.1_Missense_Mutation_p.S408F|ESYT2_uc003wny.1_5'Flank|ESYT2_uc003wnz.1_Missense_Mutation_p.S23F|ESYT2_uc003woa.1_Missense_Mutation_p.S161F	NM_020728	NP_065779	A0FGR8	ESYT2_HUMAN	family with sequence similarity 62 (C2 domain	612	C2 2.			S -> P (in Ref. 3; BAC85769).		integral to membrane|plasma membrane				central_nervous_system(2)|kidney(1)	3						GTTCCCCAGGGAACACTGGTG	0.557													13	38					0	0	1	0	0
WDR60	55112	broad.mit.edu	37	7	158663943	158663943	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr7:158663943C>T	uc003woe.3	+	3	338	c.180C>T	c.(178-180)CCC>CCT	p.P60P		NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	60										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		GCAGGGATCCCGACCAGGATG	0.463													11	13					0	0	1	0	0
ZNF596	169270	broad.mit.edu	37	8	192971	192971	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:192971C>T	uc003wot.2	+	3	385	c.97C>T	c.(97-99)CAA>TAA	p.Q33*	ZNF596_uc003wou.2_5'UTR|ZNF596_uc003wov.2_Nonsense_Mutation_p.Q33*|ZNF596_uc003wow.2_Nonsense_Mutation_p.Q33*	NM_173539	NP_775810	Q8TC21	ZN596_HUMAN	zinc finger protein 596	33	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(2;4.81e-29)|all_epithelial(2;5.03e-19)|Lung NSC(2;8.68e-08)|all_lung(2;1.52e-07)|Ovarian(12;0.00965)|Colorectal(14;0.0367)|all_neural(12;0.0837)|Myeloproliferative disorder(644;0.116)|all_hematologic(2;0.138)|Acute lymphoblastic leukemia(644;0.242)		Epithelial(5;3.77e-18)|all cancers(2;5.2e-17)|OV - Ovarian serous cystadenocarcinoma(5;5.37e-09)|BRCA - Breast invasive adenocarcinoma(11;1.7e-06)|Colorectal(2;6.51e-05)|READ - Rectum adenocarcinoma(2;0.0276)|COAD - Colon adenocarcinoma(149;0.0702)		AAAGCTGTTTCAAGATGTGAT	0.363													31	46					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1496876	1496876	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:1496876G>A	uc003wpl.2	+	2	114	c.17G>A	c.(16-18)GGA>GAA	p.G6E	DLGAP2_uc003wpm.2_Missense_Mutation_p.G6E	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	85					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GGCCTTTCCGGAAGTCGGACC	0.692													4	14					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497178	1497178	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:1497178C>T	uc003wpl.2	+	2	416	c.319C>T	c.(319-321)CGC>TGC	p.R107C	DLGAP2_uc003wpm.2_Missense_Mutation_p.R107C	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	186					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CAAGATCAACCGCATCCCGGC	0.682													11	13					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497306	1497306	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:1497306C>T	uc003wpl.2	+	2	544	c.447C>T	c.(445-447)ATC>ATT	p.I149I	DLGAP2_uc003wpm.2_Silent_p.I149I	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	228					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CCGGGCGGATCCGCCACCTGG	0.687													3	10					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497619	1497619	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:1497619C>T	uc003wpl.2	+	2	857	c.760C>T	c.(760-762)CCC>TCC	p.P254S	DLGAP2_uc003wpm.2_Missense_Mutation_p.P254S	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	333					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GCTGCAGAGCCCCTTCGGGGA	0.662													14	112					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1513857	1513857	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:1513857G>A	uc003wpl.2	+	3	1096	c.999G>A	c.(997-999)CAG>CAA	p.Q333Q	DLGAP2_uc003wpm.2_Silent_p.Q333Q	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	412					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		AGGTACCTCAGGATGAGTGGG	0.507													7	22					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1574994	1574994	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:1574994C>T	uc003wpl.2	+	4	1388	c.1291C>T	c.(1291-1293)CGG>TGG	p.R431W	DLGAP2_uc003wpm.2_Missense_Mutation_p.R431W	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	510					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		ATTCCGCTCCCGGAACCAGAG	0.627													5	9					0	0	1	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1808290	1808290	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:1808290C>T	uc003wpr.2	+	4	599	c.421C>T	c.(421-423)CTC>TTC	p.L141F	ARHGEF10_uc003wpq.1_Missense_Mutation_p.L165F|ARHGEF10_uc003wps.2_Missense_Mutation_p.L141F|ARHGEF10_uc003wpt.2_Missense_Mutation_p.L55F|ARHGEF10_uc010lrd.1_Missense_Mutation_p.L55F|ARHGEF10_uc003wpu.2_Missense_Mutation_p.L55F	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	165					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		CAACCTGCCCCTCCTGCTGCC	0.662													27	51					0	0	1	0	0
KBTBD11	9920	broad.mit.edu	37	8	1950698	1950698	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:1950698C>T	uc003wpw.3	+	2	2306	c.1340C>T	c.(1339-1341)GCC>GTC	p.A447V		NM_014867	NP_055682	O94819	KBTBB_HUMAN	kelch repeat and BTB (POZ) domain containing 11	447	Kelch 3.									pancreas(1)	1		Ovarian(12;0.0563)|Colorectal(14;0.0815)|Hepatocellular(245;0.0831)		BRCA - Breast invasive adenocarcinoma(11;7.72e-05)|READ - Rectum adenocarcinoma(644;0.0929)|COAD - Colon adenocarcinoma(149;0.134)		ggcgccTTCGCCGTGGCGCAT	0.512													3	9					0	0	1	0	0
KBTBD11	9920	broad.mit.edu	37	8	1950790	1950790	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:1950790G>A	uc003wpw.3	+	2	2398	c.1432G>A	c.(1432-1434)GAC>AAC	p.D478N		NM_014867	NP_055682	O94819	KBTBB_HUMAN	kelch repeat and BTB (POZ) domain containing 11	478	Kelch 4.									pancreas(1)	1		Ovarian(12;0.0563)|Colorectal(14;0.0815)|Hepatocellular(245;0.0831)		BRCA - Breast invasive adenocarcinoma(11;7.72e-05)|READ - Rectum adenocarcinoma(644;0.0929)|COAD - Colon adenocarcinoma(149;0.134)		CCCGCGGCGCGACGAGTGGCA	0.662													5	20					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2020459	2020459	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2020459C>T	uc003wpx.3	+	9	966	c.828C>T	c.(826-828)TTC>TTT	p.F276F	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	276	Ig-like C2-type 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		ACACGCACTTCGACGTCCAGT	0.567													8	57					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2020477	2020477	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2020477G>A	uc003wpx.3	+	9	984	c.846G>A	c.(844-846)GAG>GAA	p.E282E	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	282	Ig-like C2-type 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AGTTTTTGGAGAAGTTTGGGG	0.597													16	48					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2026852	2026852	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2026852G>A	uc003wpx.3	+	12	1438	c.1300G>A	c.(1300-1302)GAT>AAT	p.D434N	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	434	Fibronectin type-III 1.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GCAGTGCAATGATGCACCGGT	0.428													45	179					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2026901	2026901	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2026901G>A	uc003wpx.3	+	12	1487	c.1349G>A	c.(1348-1350)GGA>GAA	p.G450E	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	450	Fibronectin type-III 1.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CTTTTTGAAGGAAGGTCTTAC	0.507													99	200					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2040308	2040308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2040308C>T	uc003wpx.3	+	16	2101	c.1963C>T	c.(1963-1965)CTC>TTC	p.L655F	MYOM2_uc011kwi.1_Missense_Mutation_p.L80F	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	655	Fibronectin type-III 3.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CGGAACCAACCTCTGGGAGCC	0.612													11	77					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2057320	2057320	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2057320G>A	uc003wpx.3	+	25	3316	c.3178G>A	c.(3178-3180)GAG>AAG	p.E1060K	MYOM2_uc011kwi.1_Missense_Mutation_p.E485K	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1060					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CTCTGACAGCGAGGTGAGTTC	0.473													16	42					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2071147	2071147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2071147C>T	uc003wpx.3	+	29	3614	c.3476C>T	c.(3475-3477)ACC>ATC	p.T1159I	MYOM2_uc011kwi.1_Missense_Mutation_p.T584I	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1159	Ig-like C2-type 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AAGAAAGAAACCGTTTTCAAA	0.408													8	79					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2800046	2800046	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2800046G>A	uc011kwk.1	-	69	10876	c.10486C>T	c.(10486-10488)CCT>TCT	p.P3496S	CSMD1_uc011kwj.1_Missense_Mutation_p.P2810S|CSMD1_uc010lrg.2_Missense_Mutation_p.P1387S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3496	Helical; (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCAAAGAAAGGAACCAGAATG	0.418													5	14					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2808778	2808778	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2808778G>A	uc011kwk.1	-	66	10452	c.10062C>T	c.(10060-10062)TTC>TTT	p.F3354F	CSMD1_uc011kwj.1_Silent_p.F2668F|CSMD1_uc010lrg.2_Silent_p.F1245F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3354	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTGAATTGACGAAAAAGACAT	0.413													6	17					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2813223	2813223	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2813223G>A	uc011kwk.1	-	64	10275	c.9885C>T	c.(9883-9885)TTC>TTT	p.F3295F	CSMD1_uc011kwj.1_Silent_p.F2624F|CSMD1_uc010lrg.2_Silent_p.F1186F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3295	Sushi 28.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGTGTAGCCGAAAGTAGGAA	0.502													22	82					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2818707	2818707	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2818707C>T	uc011kwk.1	-	62	10051	c.9661G>A	c.(9661-9663)GGT>AGT	p.G3221S	CSMD1_uc011kwj.1_Missense_Mutation_p.G2550S|CSMD1_uc010lrg.2_Missense_Mutation_p.G1112S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3221	Extracellular (Potential).|Sushi 27.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGTGGCGTACCAGGGTCTGGG	0.353													8	28					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2820047	2820047	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2820047G>A	uc011kwk.1	-	61	9962	c.9572C>T	c.(9571-9573)TCC>TTC	p.S3191F	CSMD1_uc011kwj.1_Missense_Mutation_p.S2520F|CSMD1_uc010lrg.2_Missense_Mutation_p.S1082F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3191	Extracellular (Potential).|Sushi 26.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCTTCTGGAGGATCCCACGAG	0.502													10	30					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2820136	2820136	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2820136G>A	uc011kwk.1	-	61	9873	c.9483C>T	c.(9481-9483)ATC>ATT	p.I3161I	CSMD1_uc011kwj.1_Silent_p.I2490I|CSMD1_uc010lrg.2_Silent_p.I1052I	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3161	Extracellular (Potential).|Sushi 26.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTTCTGCGGGGATGCCAGGGT	0.493													12	11					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2824232	2824232	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2824232C>T	uc011kwk.1	-	58	9353	c.8963G>A	c.(8962-8964)GGA>GAA	p.G2988E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2317E|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2988	Extracellular (Potential).|Sushi 23.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GACAATCATTCCGTTGGTGGG	0.527													4	17					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2855543	2855544	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2855543_2855544GG>AA	uc011kwk.1	-	54	8759_8760	c.8369_8370CC>TT	c.(8368-8370)CCC>CTT	p.P2790L	CSMD1_uc011kwj.1_Missense_Mutation_p.P2119L|CSMD1_uc010lrg.2_Missense_Mutation_p.P800L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2790	Extracellular (Potential).|Sushi 19.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTCGACACGTGGGCAGAGGGCT	0.55													9	29					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2855607	2855607	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2855607T>A	uc011kwk.1	-	54	8696	c.8306A>T	c.(8305-8307)TAT>TTT	p.Y2769F	CSMD1_uc011kwj.1_Missense_Mutation_p.Y2098F|CSMD1_uc010lrg.2_Missense_Mutation_p.Y779F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2769	Extracellular (Potential).|Sushi 19.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTGCAGCAAATAGCCCGTGTT	0.567													13	60					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2886878	2886878	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2886878C>T	uc011kwk.1	-	51	8211	c.7821G>A	c.(7819-7821)GGG>GGA	p.G2607G	CSMD1_uc011kwj.1_Silent_p.G1936G|CSMD1_uc010lrg.2_Silent_p.G675G	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2607	Extracellular (Potential).|Sushi 16.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGTTCCACGTCCCATTGGCCT	0.517													5	24					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2944669	2944669	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:2944669C>T	uc011kwk.1	-	49	7817	c.7427G>A	c.(7426-7428)CGA>CAA	p.R2476Q	CSMD1_uc011kwj.1_Missense_Mutation_p.R1805Q|CSMD1_uc010lrg.2_Missense_Mutation_p.R544Q	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2476	Sushi 14.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AAGTGGGTTTCGTCTACAGGT	0.507													12	42					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3000022	3000022	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3000022G>A	uc011kwk.1	-	41	6599	c.6209C>T	c.(6208-6210)TCG>TTG	p.S2070L	CSMD1_uc011kwj.1_Missense_Mutation_p.S1462L|CSMD1_uc010lrg.2_Missense_Mutation_p.S138L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2070	Extracellular (Potential).|CUB 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCGGTTTTGCGAATGGTCACT	0.453													11	43					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3000169	3000169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3000169G>A	uc011kwk.1	-	41	6452	c.6062C>T	c.(6061-6063)TCT>TTT	p.S2021F	CSMD1_uc011kwj.1_Missense_Mutation_p.S1413F|CSMD1_uc010lrg.2_Missense_Mutation_p.S89F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2021	Extracellular (Potential).|CUB 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGCTTCGGTAGAAAAATTCAG	0.398													31	112					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3046493	3046493	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3046493G>A	uc011kwk.1	-	35	5832	c.5442C>T	c.(5440-5442)ATC>ATT	p.I1814I	CSMD1_uc011kwj.1_Silent_p.I1206I|CSMD1_uc003wqe.2_Silent_p.I970I|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1814	Extracellular (Potential).|CUB 11.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CGGGGGACAGGATTGTACCTC	0.463													6	20					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3081303	3081303	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3081303C>T	uc011kwk.1	-	28	4825	c.4435G>A	c.(4435-4437)GAC>AAC	p.D1479N	CSMD1_uc011kwj.1_Missense_Mutation_p.D871N|CSMD1_uc003wqe.2_Missense_Mutation_p.D635N	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1479	Extracellular (Potential).|CUB 9.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ACTCTCCAGTCACATTCCTTC	0.463													24	60					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3087637	3087637	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3087637G>A	uc011kwk.1	-	27	4663	c.4273C>T	c.(4273-4275)CAA>TAA	p.Q1425*	CSMD1_uc011kwj.1_Nonsense_Mutation_p.Q817*|CSMD1_uc003wqe.2_Nonsense_Mutation_p.Q581*	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1425	Extracellular (Potential).|Sushi 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCTTGTCCTTGGAGCTGATAG	0.502													12	31					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3200901	3200901	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3200901G>A	uc011kwk.1	-	23	3939	c.3549C>T	c.(3547-3549)ATC>ATT	p.I1183I	CSMD1_uc011kwj.1_Silent_p.I575I|CSMD1_uc003wqe.2_Silent_p.I339I	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1183	Extracellular (Potential).|CUB 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCTGTTTAGGATCAGCCCCA	0.448													19	63					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3224759	3224759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3224759C>T	uc011kwk.1	-	20	3303	c.2913G>A	c.(2911-2913)ATG>ATA	p.M971I	CSMD1_uc011kwj.1_Missense_Mutation_p.M363I|CSMD1_uc003wqe.2_Missense_Mutation_p.M127I	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	971	Extracellular (Potential).|CUB 6.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGTGAAAGATCATTTGAACTC	0.498													3	15					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3256994	3256994	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3256994G>A	uc011kwk.1	-	16	2717	c.2327C>T	c.(2326-2328)CCA>CTA	p.P776L	CSMD1_uc011kwj.1_Missense_Mutation_p.P168L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	776	Extracellular (Potential).|CUB 5.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATAATATCCTGGCCATCCAGG	0.388													19	52					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3265439	3265439	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3265439A>G	uc011kwk.1	-	14	2446	c.2056T>C	c.(2056-2058)TTC>CTC	p.F686L	CSMD1_uc011kwj.1_Missense_Mutation_p.F78L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	686	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTGATGTTGAACCCTCTGCCA	0.448													4	11					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3265441	3265441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3265441C>T	uc011kwk.1	-	14	2444	c.2054G>A	c.(2053-2055)GGG>GAG	p.G685E	CSMD1_uc011kwj.1_Missense_Mutation_p.G77E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	685	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GATGTTGAACCCTCTGCCAGT	0.448													5	11					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3265542	3265542	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3265542G>A	uc011kwk.1	-	14	2343	c.1953C>T	c.(1951-1953)GTC>GTT	p.V651V	CSMD1_uc011kwj.1_Silent_p.V43V	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	651	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AAGTACCCAGGACAGTTATGT	0.463													5	36					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3267076	3267076	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3267076C>T	uc011kwk.1	-	13	2006	c.1616G>A	c.(1615-1617)CGG>CAG	p.R539Q	CSMD1_uc011kwj.1_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	539	Extracellular (Potential).|Sushi 3.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCTGCCCGTCCGCTTCCCATA	0.493													3	15					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3351177	3351177	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3351177C>T	uc011kwk.1	-	11	1809	c.1419G>A	c.(1417-1419)GGG>GGA	p.G473G		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	473	CUB 3.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTCCCACCTTCCCAGCATCAC	0.507													12	8					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3855571	3855571	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3855571G>A	uc011kwk.1	-	5	1062	c.672C>T	c.(670-672)TTC>TTT	p.F224F		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	224	Extracellular (Potential).|CUB 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ACTCTGAAGGGAAGTGCGGGC	0.572													3	5					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3889576	3889577	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3889576_3889577CC>TT	uc011kwk.1	-	4	850_851	c.460_461GG>AA	c.(460-462)GGA>AAA	p.G154K		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	154	Extracellular (Potential).|Sushi 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATGCAGAACTCCTTTCAGGATT	0.45													16	45					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3889591	3889591	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:3889591C>T	uc011kwk.1	-	4	836	c.446G>A	c.(445-447)GGA>GAA	p.G149E		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	149	Extracellular (Potential).|Sushi 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGGATTTCTCCAGGATTTCC	0.418													13	45					0	0	1	0	0
XKR5	389610	broad.mit.edu	37	8	6679508	6679508	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:6679508G>A	uc003wqp.2	-	5	712	c.690C>T	c.(688-690)ATC>ATT	p.I230I	XKR5_uc003wqq.2_Silent_p.I67I|XKR5_uc003wqr.1_RNA	NM_207411	NP_997294	Q6UX68	XKR5_HUMAN	XK-related protein 5a	230						integral to membrane					0			STAD - Stomach adenocarcinoma(24;0.0984)	READ - Rectum adenocarcinoma(644;0.137)|COAD - Colon adenocarcinoma(149;0.166)		TGCTGTCGATGATGTCACTCT	0.587													8	7					0	0	1	0	0
DEFB1	1672	broad.mit.edu	37	8	6728337	6728337	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:6728337G>A	uc003wqs.2	-	2	223	c.73C>T	c.(73-75)CTC>TTC	p.L25F		NM_005218	NP_005209	P60022	DEFB1_HUMAN	defensin, beta 1 preproprotein	25					chemotaxis|defense response to bacterium|G-protein coupled receptor protein signaling pathway|innate immune response	extracellular region					0			STAD - Stomach adenocarcinoma(24;0.0984)	COAD - Colon adenocarcinoma(149;0.0162)|READ - Rectum adenocarcinoma(644;0.128)		AGGCCTGTGAGAAAGTTACCA	0.468													12	35					0	0	1	0	0
DEFA6	1671	broad.mit.edu	37	8	6782352	6782352	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:6782352G>A	uc003wqt.2	-	2	332	c.291C>T	c.(289-291)TTC>TTT	p.F97F		NM_001926	NP_001917	Q01524	DEF6_HUMAN	defensin, alpha 6 preproprotein	97					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0			STAD - Stomach adenocarcinoma(24;0.0322)	COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		AGAGGCAGCAGAATCTGTGGT	0.418													7	82					0	0	1	0	0
DEFA6	1671	broad.mit.edu	37	8	6783476	6783476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:6783476G>A	uc003wqt.2	-	1	123	c.82C>T	c.(82-84)CCA>TCA	p.P28S		NM_001926	NP_001917	Q01524	DEF6_HUMAN	defensin, alpha 6 preproprotein	28					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0			STAD - Stomach adenocarcinoma(24;0.0322)	COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		GCCTGCAGTGGATCATCCTCA	0.577													10	19					0	0	1	0	0
DEFA4	1669	broad.mit.edu	37	8	6793654	6793654	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:6793654C>T	uc003wqu.1	-	3	233	c.182G>A	c.(181-183)AGG>AAG	p.R61K		NM_001925	NP_001916	P12838	DEF4_HUMAN	defensin, alpha 4 preproprotein	61					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space				large_intestine(1)	1				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		GACCATGCCCCTTGTTGAGCC	0.517													9	47					0	0	1	0	0
DEFA4	1669	broad.mit.edu	37	8	6794376	6794376	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:6794376G>T	uc003wqu.1	-	2	97	c.46C>A	c.(46-48)CAG>AAG	p.Q16K		NM_001925	NP_001916	P12838	DEF4_HUMAN	defensin, alpha 4 preproprotein	16					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space				large_intestine(1)	1				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		GCCCGGACCTGGAGGGCTACC	0.607													7	44					8.12818e-05	8.13859e-05	1	1	0
SGK223	157285	broad.mit.edu	37	8	8176141	8176141	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8176141G>A	uc003wsh.3	-	5	3744	c.3744C>T	c.(3742-3744)TTC>TTT	p.F1248F		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	1248	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GGAACTCATCGAACTTGCGGT	0.642													19	41					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8176468	8176468	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8176468G>A	uc003wsh.3	-	5	3417	c.3417C>T	c.(3415-3417)ATC>ATT	p.I1139I		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	1139	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CCCGGTGGATGATCCCGTGCT	0.577													14	160					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8185497	8185497	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8185497G>A	uc003wsh.3	-	4	2795	c.2795C>T	c.(2794-2796)ACC>ATC	p.T932I		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	932							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CTGAAGCTGGGTGCTCCCGGT	0.657													11	47					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8234014	8234014	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8234014G>A	uc003wsh.3	-	2	1905	c.1905C>T	c.(1903-1905)TGC>TGT	p.C635C		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	635							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CCTCTATCCGGCACTGACGAC	0.602													17	53					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8234487	8234487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8234487G>A	uc003wsh.3	-	2	1432	c.1432C>T	c.(1432-1434)CAC>TAC	p.H478Y		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	478							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						TCTTCCGGGTGGGCCGCCATG	0.647													7	32					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8235340	8235340	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8235340G>A	uc003wsh.3	-	2	579	c.579C>T	c.(577-579)CCC>CCT	p.P193P		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	193							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						AAGGAAATGAGGGTTTTTCTT	0.617													30	90					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8235575	8235575	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8235575C>T	uc003wsh.3	-	2	344	c.344G>A	c.(343-345)CGA>CAA	p.R115Q		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	115							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GCCAGGGGCTCGTCTCCAGAT	0.547													30	83					0	0	1	0	0
CLDN23	137075	broad.mit.edu	37	8	8560001	8560001	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8560001G>A	uc003wsi.2	+	1	336	c.93G>A	c.(91-93)CGG>CGA	p.R31R		NM_194284	NP_919260	Q96B33	CLD23_HUMAN	claudin 23	31	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.071)|READ - Rectum adenocarcinoma(644;0.238)		CCGGCTGGCGGCTGGTGAAGG	0.706													5	11					0	0	1	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998360	8998360	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8998360G>A	uc003wsn.3	-	2	967	c.802C>T	c.(802-804)CTG>TTG	p.L268L	PPP1R3B_uc003wso.3_Silent_p.L267L	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	268					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		TCTGGAAACAGACCATAGGAA	0.532													16	41					0	0	1	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998909	8998909	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:8998909G>A	uc003wsn.3	-	2	418	c.253C>T	c.(253-255)CCG>TCG	p.P85S	PPP1R3B_uc003wso.3_Missense_Mutation_p.P84S	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	85					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		ATATCTAGCGGGTCATCGAAT	0.532													10	124					0	0	1	0	0
TNKS	8658	broad.mit.edu	37	8	9609185	9609185	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:9609185C>T	uc003wss.2	+	19	2904	c.2899C>T	c.(2899-2901)CCT>TCT	p.P967S	TNKS_uc011kww.1_Missense_Mutation_p.P730S|TNKS_uc010lrt.1_RNA	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	967					mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		CTGTTTTAAACCTCAGGCTAC	0.488													44	247					0	0	1	0	0
TNKS	8658	broad.mit.edu	37	8	9623815	9623815	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:9623815T>G	uc003wss.2	+	25	3625	c.3620T>G	c.(3619-3621)ATG>AGG	p.M1207R	TNKS_uc011kww.1_Missense_Mutation_p.M970R	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	1207	PARP catalytic.				mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		ATAGGAGGAATGTTTGGGGCC	0.408													52	117					0	0	1	0	0
PRSS55	203074	broad.mit.edu	37	8	10383139	10383139	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10383139G>A	uc003wta.2	+	1	59	c.44G>A	c.(43-45)GGA>GAA	p.G15E	uc010lru.2_Intron	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	15					proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						CTGGTCACGGGAACTCAGCTC	0.677													20	45					0	0	1	0	0
PRSS55	203074	broad.mit.edu	37	8	10387029	10387029	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10387029G>A	uc003wta.2	+	2	182	c.167G>A	c.(166-168)AGA>AAA	p.R56K	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	56	Extracellular (Potential).				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						TGTGGTGACAGATCTATTTTC	0.532													42	124					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10464881	10464881	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10464881C>T	uc003wtc.2	-	4	6956	c.6727G>A	c.(6727-6729)GGA>AGA	p.G2243R		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2243					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TGAGTTTCTCCTTCTGACTCT	0.602													45	146					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10465377	10465377	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10465377C>T	uc003wtc.2	-	4	6460	c.6231G>A	c.(6229-6231)GAG>GAA	p.E2077E		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2077					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTGGGTGGGCCTCCCCTTCTG	0.642													26	244					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10466660	10466660	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10466660C>T	uc003wtc.2	-	4	5177	c.4948G>A	c.(4948-4950)GAG>AAG	p.E1650K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1650					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCCTCCGCCTCCTCGCCCAGC	0.677													15	49					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10467212	10467212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10467212C>T	uc003wtc.2	-	4	4625	c.4396G>A	c.(4396-4398)GAG>AAG	p.E1466K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1466					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTCTGCCTCTCGCTGGCACTT	0.657													40	78					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10467458	10467458	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10467458C>T	uc003wtc.2	-	4	4379	c.4150G>A	c.(4150-4152)GGA>AGA	p.G1384R		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1384					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCTTGCAGTCCTCCTTCTGGC	0.423													123	360					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10467747	10467747	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10467747C>T	uc003wtc.2	-	4	4090	c.3861G>A	c.(3859-3861)TCG>TCA	p.S1287S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1287					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCTCCAGGTTCGAGCTCGCCC	0.408													21	174					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10468287	10468287	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10468287C>T	uc003wtc.2	-	4	3550	c.3321G>A	c.(3319-3321)ATG>ATA	p.M1107I		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1107					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCCTCCTGGCCATGGGCCTAG	0.627													25	104					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10468807	10468807	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10468807G>A	uc003wtc.2	-	4	3030	c.2801C>T	c.(2800-2802)CCC>CTC	p.P934L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	934					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTGCCCCTGGGGGCCTCCCCC	0.657													15	39					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10468850	10468850	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10468850G>A	uc003wtc.2	-	4	2987	c.2758C>T	c.(2758-2760)CGG>TGG	p.R920W		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	920					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GACAGCCCCCGAGACCCCGCA	0.706													4	32					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10469108	10469108	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10469108C>T	uc003wtc.2	-	4	2729	c.2500G>A	c.(2500-2502)GCC>ACC	p.A834T		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	834					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCCTCTTGGGCCGGCTGCGTC	0.721													6	9					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10469264	10469264	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10469264C>T	uc003wtc.2	-	4	2573	c.2344G>A	c.(2344-2346)GAC>AAC	p.D782N		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	782					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GAGCAGGAGTCGGATGTGTGG	0.667													13	83					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10469482	10469482	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10469482G>A	uc003wtc.2	-	4	2355	c.2126C>T	c.(2125-2127)TCG>TTG	p.S709L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	709					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCTGGTGCTCGATGAGCTTCC	0.617													15	37					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10470832	10470832	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10470832G>A	uc003wtc.2	-	4	1005	c.776C>T	c.(775-777)CCG>CTG	p.P259L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	259					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GATCACACTCGGCTTGGTCTT	0.602													29	59					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10480303	10480303	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10480303C>T	uc003wtc.2	-	2	638	c.409G>A	c.(409-411)GAA>AAA	p.E137K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	137					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCTGGGGCTTCACGCTGGCCT	0.602													25	51					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10480586	10480586	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10480586C>T	uc003wtc.2	-	2	355	c.126G>A	c.(124-126)GGG>GGA	p.G42G		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	42					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ACCGTGGATCCCCTCGCTTGA	0.652													30	61					0	0	1	0	0
C8orf74	203076	broad.mit.edu	37	8	10555134	10555134	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10555134G>A	uc003wtd.1	+	3	296	c.267G>A	c.(265-267)ACG>ACA	p.T89T	C8orf74_uc003wte.1_RNA	NM_001040032	NP_001035121	Q6P047	CH074_HUMAN	hypothetical protein LOC203076	89											0				COAD - Colon adenocarcinoma(149;0.0811)		AGGCTGTGACGATCCTGGGGA	0.587													12	142					0	0	1	0	0
SOX7	83595	broad.mit.edu	37	8	10583561	10583561	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10583561G>A	uc003wtf.2	-	2	933	c.854C>T	c.(853-855)TCC>TTC	p.S285F	SOX7_uc011kwz.1_Missense_Mutation_p.S337F	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	285	Sox C-terminal.				endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		GGTGGCCGGGGAGTAATAGGC	0.667													15	29					0	0	1	0	0
SOX7	83595	broad.mit.edu	37	8	10583582	10583582	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10583582G>A	uc003wtf.2	-	2	912	c.833C>T	c.(832-834)CCC>CTC	p.P278L	SOX7_uc011kwz.1_Missense_Mutation_p.P330L	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	278	Sox C-terminal.				endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		AGGAGATGGGGGACAGCCGGG	0.677													16	27					0	0	1	0	0
XKR6	286046	broad.mit.edu	37	8	10755639	10755639	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10755639G>A	uc003wtk.1	-	3	1776	c.1749C>T	c.(1747-1749)CCC>CCT	p.P583P		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	583						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		TCTTAATGAGGGGCCCTTCTG	0.512													13	39					0	0	1	0	0
XKR6	286046	broad.mit.edu	37	8	10756116	10756116	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10756116G>A	uc003wtk.1	-	3	1299	c.1272C>T	c.(1270-1272)ATC>ATT	p.I424I		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	424	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		AAATGTACACGATCCCTACCA	0.493													12	22					0	0	1	0	0
XKR6	286046	broad.mit.edu	37	8	10756197	10756197	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10756197C>T	uc003wtk.1	-	3	1218	c.1191G>A	c.(1189-1191)ATG>ATA	p.M397I		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	397						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		TCCAGAAGGCCATGGCGCACC	0.512													7	60					0	0	1	0	0
XKR6	286046	broad.mit.edu	37	8	10782145	10782145	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:10782145G>A	uc003wtk.1	-	2	987	c.960C>T	c.(958-960)CCC>CCT	p.P320P		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	320	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		ggcACTCACAGGGCAGGGTCT	0.547													9	67					0	0	1	0	0
BLK	640	broad.mit.edu	37	8	11400787	11400787	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:11400787G>A	uc003wty.2	+	2	635	c.54G>A	c.(52-54)AAG>AAA	p.K18K	BLK_uc003wtz.2_Intron	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	18					intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		TCAAAGAGAAGGACAAGGGCC	0.577													18	59					0	0	1	0	0
BLK	640	broad.mit.edu	37	8	11414274	11414274	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:11414274G>A	uc003wty.2	+	9	1461	c.880G>A	c.(880-882)GAG>AAG	p.E294K	BLK_uc003wtz.2_Missense_Mutation_p.E223K	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	294	Protein kinase.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		TCTGCAGCACGAGCGGCTGGT	0.577													17	49					0	0	1	0	0
USP17L2	377630	broad.mit.edu	37	8	11994845	11994845	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:11994845C>T	uc003wvc.1	-	1	1425	c.1425G>A	c.(1423-1425)ATG>ATA	p.M475I	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	475					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						GATGGTTTTTCATCCCACACT	0.493													24	15					0	0	1	0	0
FAM86B1	85002	broad.mit.edu	37	8	12042898	12042898	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:12042898G>A	uc010lse.2	-	6	822	c.777C>T	c.(775-777)TTC>TTT	p.F259F	FAM66D_uc011kxp.1_Intron|FAM86B1_uc003wvf.3_RNA|FAM86B1_uc003wvi.3_Silent_p.F65F|FAM86B1_uc010lsd.2_RNA|FAM86B1_uc003wvh.3_Silent_p.F102F|FAM86B1_uc011kxq.1_Silent_p.F65F|FAM86B1_uc010lsf.2_Silent_p.F102F|FAM86B1_uc003wvj.3_Silent_p.F193F|FAM86B1_uc003wvk.3_Silent_p.F293F|FAM86B1_uc010lsg.2_RNA|FAM86B1_uc003wvl.3_RNA	NM_001083537	NP_001077006	Q8N7N1	F86B1_HUMAN	hypothetical protein LOC85002	259											0			STAD - Stomach adenocarcinoma(15;0.033)	COAD - Colon adenocarcinoma(149;0.0965)		GCTCGGTGGTGAACAGCTGGC	0.662													9	23					0	0	1	0	0
FAM86B1	85002	broad.mit.edu	37	8	12044027	12044027	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:12044027C>T	uc010lse.2	-	5	519	c.474G>A	c.(472-474)CGG>CGA	p.R158R	FAM66D_uc011kxp.1_Intron|FAM86B1_uc003wvf.3_Intron|FAM86B1_uc003wvi.3_Intron|FAM86B1_uc010lsd.2_Intron|FAM86B1_uc003wvh.3_Intron|FAM86B1_uc011kxq.1_Intron|FAM86B1_uc010lsf.2_Intron|FAM86B1_uc003wvj.3_Silent_p.R92R|FAM86B1_uc003wvk.3_Silent_p.R192R|FAM86B1_uc010lsg.2_Intron|FAM86B1_uc003wvl.3_Intron	NM_001083537	NP_001077006	Q8N7N1	F86B1_HUMAN	hypothetical protein LOC85002	158											0			STAD - Stomach adenocarcinoma(15;0.033)	COAD - Colon adenocarcinoma(149;0.0965)		GCTCGAGGACCCGGCTGTGAG	0.612													12	44					0	0	1	0	0
DLC1	10395	broad.mit.edu	37	8	12947771	12947771	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:12947771G>A	uc003wwm.2	-	15	4508	c.4064C>T	c.(4063-4065)TCC>TTC	p.S1355F	DLC1_uc003wwk.1_Missense_Mutation_p.S918F|DLC1_uc003wwl.1_Missense_Mutation_p.S952F|DLC1_uc011kxx.1_Missense_Mutation_p.S844F	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	1355	START.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						CTTCTTATAGGACAGCTCAGC	0.493													18	63					0	0	1	0	0
DLC1	10395	broad.mit.edu	37	8	12958036	12958036	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:12958036G>A	uc003wwm.2	-	9	2254	c.1810C>T	c.(1810-1812)CCC>TCC	p.P604S	DLC1_uc003wwk.1_Missense_Mutation_p.P167S|DLC1_uc003wwl.1_Missense_Mutation_p.P201S|DLC1_uc011kxx.1_Missense_Mutation_p.P93S	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	604					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GCGTGGCTGGGGAGGCTGCCA	0.672													10	86					0	0	1	0	0
DLC1	10395	broad.mit.edu	37	8	13357153	13357153	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:13357153C>T	uc003wwm.2	-	2	872	c.428G>A	c.(427-429)GGA>GAA	p.G143E	DLC1_uc003wwn.2_Missense_Mutation_p.G143E|DLC1_uc011kxy.1_Missense_Mutation_p.G143E	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	143					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GGAGCCTGCTCCTTGGATCAT	0.408													79	149					0	0	1	0	0
SGCZ	137868	broad.mit.edu	37	8	13959964	13959964	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:13959964C>T	uc003wwq.2	-	7	1325	c.665G>A	c.(664-666)GGG>GAG	p.G222E	SGCZ_uc010lss.2_Missense_Mutation_p.G175E	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	209	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CACCTGGACCCCACGGGGAGC	0.463													7	38					0	0	1	0	0
SGCZ	137868	broad.mit.edu	37	8	14022123	14022123	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:14022123C>T	uc003wwq.2	-	5	1173	c.513G>A	c.(511-513)GAG>GAA	p.E171E	SGCZ_uc010lss.2_Silent_p.E124E	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	158	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CAATGGTAATCTCATCTTCAT	0.423													12	74					0	0	1	0	0
SGCZ	137868	broad.mit.edu	37	8	14022146	14022146	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:14022146G>A	uc003wwq.2	-	5	1150	c.490C>T	c.(490-492)CTG>TTG	p.L164L	SGCZ_uc010lss.2_Silent_p.L117L	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	151	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		GCAGAAAACAGCACCCTGCCA	0.408													10	72					0	0	1	0	0
SGCZ	137868	broad.mit.edu	37	8	14022150	14022150	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:14022150C>T	uc003wwq.2	-	5	1146	c.486G>A	c.(484-486)AGG>AGA	p.R162R	SGCZ_uc010lss.2_Silent_p.R115R	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	149	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		AAAACAGCACCCTGCCATCTT	0.413													27	57					0	0	1	0	0
MIR383	494332	broad.mit.edu	37	8	14710953	14710953	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:14710953C>T	hsa-mir-383|MI0000791	-			c.67C>T			SGCZ_uc003wwq.2_Intron|uc010lst.1_RNA																	0						CTTGCTCTTTCTGACCAGGCA	0.512													12	38					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	15967631	15967631	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:15967631G>A	uc003wwz.2	-	10	1517	c.1319C>T	c.(1318-1320)TCA>TTA	p.S440L	MSR1_uc010lsu.2_Missense_Mutation_p.S458L|MSR1_uc003wxa.2_Missense_Mutation_p.S377L	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	440	SRCR.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		TTCAGAATGTGAACAGGCTCT	0.378													42	87					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	15967683	15967683	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:15967683C>T	uc003wwz.2	-	10	1465	c.1267G>A	c.(1267-1269)GAA>AAA	p.E423K	MSR1_uc010lsu.2_Missense_Mutation_p.E441K|MSR1_uc003wxa.2_Missense_Mutation_p.E360K	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	423	SRCR.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		ATAGATGATTCTCTCCCAAAA	0.373													49	85					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	15977991	15977991	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:15977991G>A	uc003wwz.2	-	9	1356	c.1158C>T	c.(1156-1158)GTC>GTT	p.V386V	MSR1_uc010lsu.2_Silent_p.V404V|MSR1_uc003wxa.2_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	386	SRCR.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		TCCTACAGACGACCTGTCCAA	0.542													50	115					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	15978098	15978098	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:15978098G>A	uc003wwz.2	-	9	1249	c.1051C>T	c.(1051-1053)CGA>TGA	p.R351*	MSR1_uc010lsu.2_Nonsense_Mutation_p.R369*|MSR1_uc003wxa.2_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	351	SRCR.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CCGACCAGTCGAACTTTCGTA	0.453													22	55					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16001112	16001112	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16001112C>T	uc003wwz.2	-	8	1186	c.988G>A	c.(988-990)GGA>AGA	p.G330R	MSR1_uc010lsu.2_Missense_Mutation_p.G348R|MSR1_uc003wxa.2_Missense_Mutation_p.G330R|MSR1_uc003wxb.2_Missense_Mutation_p.G330R|MSR1_uc011kxz.1_Missense_Mutation_p.G104R	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	330	Collagen-like.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CCTTTTGGTCCAGAATTTCCT	0.328													18	56					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16012579	16012579	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16012579G>A	uc003wwz.2	-	6	1090	c.892C>T	c.(892-894)CCA>TCA	p.P298S	MSR1_uc010lsu.2_Missense_Mutation_p.P316S|MSR1_uc003wxa.2_Missense_Mutation_p.P298S|MSR1_uc003wxb.2_Missense_Mutation_p.P298S|MSR1_uc011kxz.1_Missense_Mutation_p.P72S	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	298	Collagen-like.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		ATACCTATTGGACCTGGAAAT	0.398													20	40					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16021577	16021577	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16021577G>A	uc003wwz.2	-	5	1012	c.814C>T	c.(814-816)CAA>TAA	p.Q272*	MSR1_uc010lsu.2_Nonsense_Mutation_p.Q290*|MSR1_uc003wxa.2_Nonsense_Mutation_p.Q272*|MSR1_uc003wxb.2_Nonsense_Mutation_p.Q272*|MSR1_uc011kxz.1_Nonsense_Mutation_p.Q46*	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	272	Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		ATTTTACCTTGAATTAAAGTG	0.294													15	33					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16026284	16026284	+	Missense_Mutation	SNP	C	T	T	rs13306549		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16026284C>T	uc003wwz.2	-	4	511	c.313G>A	c.(313-315)GAA>AAA	p.E105K	MSR1_uc010lsu.2_Missense_Mutation_p.E123K|MSR1_uc003wxa.2_Missense_Mutation_p.E105K|MSR1_uc003wxb.2_Missense_Mutation_p.E105K|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	105	Spacer (Probable).|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		ATTTCCTCTTCGCTGTCATTT	0.403													99	94					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16032714	16032714	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16032714G>A	uc003wwz.2	-	3	397	c.199C>T	c.(199-201)CTC>TTC	p.L67F	MSR1_uc010lsu.2_Missense_Mutation_p.L85F|MSR1_uc003wxa.2_Missense_Mutation_p.L67F|MSR1_uc003wxb.2_Missense_Mutation_p.L67F|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	67	Helical; Signal-anchor for type II membrane protein; (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		ATTCCAATGAGAGGGATGAGA	0.418													7	81					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16032807	16032807	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16032807G>A	uc003wwz.2	-	3	304	c.106C>T	c.(106-108)CCT>TCT	p.P36S	MSR1_uc010lsu.2_Missense_Mutation_p.P54S|MSR1_uc003wxa.2_Missense_Mutation_p.P36S|MSR1_uc003wxb.2_Missense_Mutation_p.P36S|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	36	Cytoplasmic (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CTGTTTTTAGGATCTAATAAA	0.388													11	56					0	0	1	0	0
FGF20	26281	broad.mit.edu	37	8	16850716	16850716	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16850716C>T	uc003wxc.1	-	3	634	c.501G>A	c.(499-501)GTG>GTA	p.V167V	FGF20_uc010lsv.1_RNA|FGF20_uc010lsw.1_3'UTR	NM_019851	NP_062825	Q9NP95	FGF20_HUMAN	fibroblast growth factor 20	167					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	extracellular region|soluble fraction	growth factor activity			lung(1)	1				Colorectal(111;0.0511)|COAD - Colon adenocarcinoma(73;0.207)		TGTTAAGTGCCACAAAATACC	0.433													22	177					0	0	1	0	0
EFHA2	286097	broad.mit.edu	37	8	16921710	16921710	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16921710G>A	uc003wxd.2	+	2	541	c.499G>A	c.(499-501)GAT>AAT	p.D167N		NM_181723	NP_859074	Q86XE3	EFHA2_HUMAN	EF-hand domain family, member A2	167						integral to membrane	calcium ion binding			skin(1)	1				Colorectal(111;0.0686)|COAD - Colon adenocarcinoma(73;0.239)		GACTCCGTATGATTTTATTTT	0.348													16	91					0	0	1	0	0
EFHA2	286097	broad.mit.edu	37	8	16935309	16935309	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16935309C>T	uc003wxd.2	+	4	627	c.585C>T	c.(583-585)CTC>CTT	p.L195L		NM_181723	NP_859074	Q86XE3	EFHA2_HUMAN	EF-hand domain family, member A2	195						integral to membrane	calcium ion binding			skin(1)	1				Colorectal(111;0.0686)|COAD - Colon adenocarcinoma(73;0.239)		ATCAAATGCTCGCAGAAACAC	0.313													13	46					0	0	1	0	0
EFHA2	286097	broad.mit.edu	37	8	16935338	16935338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16935338C>T	uc003wxd.2	+	4	656	c.614C>T	c.(613-615)TCA>TTA	p.S205L		NM_181723	NP_859074	Q86XE3	EFHA2_HUMAN	EF-hand domain family, member A2	205						integral to membrane	calcium ion binding			skin(1)	1				Colorectal(111;0.0686)|COAD - Colon adenocarcinoma(73;0.239)		TGGAAAGGCTCATCGAAGCTA	0.284													17	45					0	0	1	0	0
EFHA2	286097	broad.mit.edu	37	8	16961987	16961987	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:16961987G>A	uc003wxd.2	+	10	1114	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K		NM_181723	NP_859074	Q86XE3	EFHA2_HUMAN	EF-hand domain family, member A2	358						integral to membrane	calcium ion binding			skin(1)	1				Colorectal(111;0.0686)|COAD - Colon adenocarcinoma(73;0.239)		GCTCAACTTTGAAGATTTTTA	0.294													33	68					0	0	1	0	0
MTMR7	9108	broad.mit.edu	37	8	17157559	17157559	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17157559C>T	uc003wxm.2	-	14	2034	c.1795G>A	c.(1795-1797)GAA>AAA	p.E599K	MTMR7_uc011kya.1_Missense_Mutation_p.E233K|MTMR7_uc011kyb.1_Missense_Mutation_p.E190K	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	599							protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		GCAGAATCTTCATCGCCTTGT	0.483													9	125					0	0	1	0	0
MTMR7	9108	broad.mit.edu	37	8	17198950	17198950	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17198950C>T	uc003wxm.2	-	6	893	c.654G>A	c.(652-654)GAG>GAA	p.E218E	MTMR7_uc003wxn.2_5'UTR	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	218	Myotubularin phosphatase.						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		TCTGCTCGTCCTCTAGGCACC	0.577													7	40					0	0	1	0	0
MTMR7	9108	broad.mit.edu	37	8	17198952	17198952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17198952C>T	uc003wxm.2	-	6	891	c.652G>A	c.(652-654)GAG>AAG	p.E218K	MTMR7_uc003wxn.2_5'UTR	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	218	Myotubularin phosphatase.						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		TGCTCGTCCTCTAGGCACCGG	0.572													11	38					0	0	1	0	0
MTMR7	9108	broad.mit.edu	37	8	17230663	17230663	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17230663G>A	uc003wxm.2	-	2	350	c.111C>T	c.(109-111)TTC>TTT	p.F37F		NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	37							protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		AATTTTCCACGAATATGACAT	0.403													8	37					0	0	1	0	0
SLC7A2	6542	broad.mit.edu	37	8	17412148	17412148	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17412148C>T	uc011kyc.1	+	7	1304	c.1135C>T	c.(1135-1137)CAA>TAA	p.Q379*	SLC7A2_uc011kyd.1_Intron|SLC7A2_uc011kye.1_Nonsense_Mutation_p.Q419*|SLC7A2_uc011kyf.1_Nonsense_Mutation_p.Q379*	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	379	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	ATGTCTAGCTCAAATCAATTC	0.418													59	171					0	0	1	0	0
SLC7A2	6542	broad.mit.edu	37	8	17415876	17415876	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17415876C>T	uc011kyc.1	+	8	1437	c.1268C>T	c.(1267-1269)TCT>TTT	p.S423F	SLC7A2_uc011kyd.1_Missense_Mutation_p.S462F|SLC7A2_uc011kye.1_Missense_Mutation_p.S463F|SLC7A2_uc011kyf.1_Missense_Mutation_p.S423F	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	423	Helical; (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	ATGGCCTACTCTCTGGTGGCA	0.532													6	69					0	0	1	0	0
SLC7A2	6542	broad.mit.edu	37	8	17422640	17422640	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17422640G>A	uc011kyc.1	+	12	2131	c.1962G>A	c.(1960-1962)AAG>AAA	p.K654K	SLC7A2_uc011kyd.1_Silent_p.K693K|SLC7A2_uc011kye.1_Silent_p.K694K|SLC7A2_uc011kyf.1_Silent_p.K654K	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	654	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	TCCATGAAAAGACAAGTGAAT	0.433													13	26					0	0	1	0	0
PDGFRL	5157	broad.mit.edu	37	8	17447105	17447105	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17447105C>T	uc003wxr.2	+	2	245	c.184C>T	c.(184-186)CCA>TCA	p.P62S		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	62	Ig-like C2-type 1.					extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		CAATTCAGCACCAAAGACGCA	0.498													23	112					0	0	1	0	0
MTUS1	57509	broad.mit.edu	37	8	17507464	17507464	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17507464G>A	uc003wxv.2	-	13	3866	c.3392C>T	c.(3391-3393)CCT>CTT	p.P1131L	MTUS1_uc003wxt.2_Missense_Mutation_p.P378L|MTUS1_uc011kyg.1_Missense_Mutation_p.P276L|MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Missense_Mutation_p.P1077L|MTUS1_uc003wxs.2_Missense_Mutation_p.P297L	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	1131	Potential.					Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		CATGATCTGAGGATTTTTCTG	0.353													34	84					0	0	1	0	0
FGL1	2267	broad.mit.edu	37	8	17726125	17726125	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:17726125C>T	uc003wxx.2	-	8	1035	c.711G>A	c.(709-711)TGG>TGA	p.W237*	FGL1_uc003wxy.2_Nonsense_Mutation_p.W237*|FGL1_uc003wxz.2_Nonsense_Mutation_p.W236*|FGL1_uc003wya.2_Nonsense_Mutation_p.W237*|FGL1_uc003wyb.2_Nonsense_Mutation_p.W237*|FGL1_uc003wyc.2_Nonsense_Mutation_p.W237*|FGL1_uc003wyd.2_RNA|FGL1_uc003wye.2_Nonsense_Mutation_p.W287*|FGL1_uc003wyf.2_Nonsense_Mutation_p.W207*	NM_201553	NP_963847	Q08830	FGL1_HUMAN	fibrinogen-like 1 precursor	237	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding				0				Colorectal(111;0.0573)|COAD - Colon adenocarcinoma(73;0.215)		GATCTCTGTCCCACGTGCTGA	0.463													58	131					0	0	1	0	0
NAT2	10	broad.mit.edu	37	8	18257552	18257552	+	Silent	SNP	G	A	A	rs138099497		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18257552G>A	uc003wyw.1	+	2	146	c.39G>A	c.(37-39)AAG>AAA	p.K13K		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	13					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		TTGGCTATAAGAACTCTAGGA	0.373									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				56	167					0	0	1	0	0
NAT2	10	broad.mit.edu	37	8	18257561	18257561	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18257561G>A	uc003wyw.1	+	2	155	c.48G>A	c.(46-48)AGG>AGA	p.R16R		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	16					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		AGAACTCTAGGAACAAATTGG	0.378									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				68	150					0	0	1	0	0
NAT2	10	broad.mit.edu	37	8	18258340	18258341	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18258340_18258341GG>AA	uc003wyw.1	+	2	934_935	c.827_828GG>AA	c.(826-828)GGG>GAA	p.G276E		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	276					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		ATTTCCTTGGGGAGAAATCTCG	0.317									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				21	56					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18393374	18393374	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18393374G>A	uc003wza.2	-	16	3126	c.3023C>T	c.(3022-3024)TCG>TTG	p.S1008L	PSD3_uc003wyx.3_Missense_Mutation_p.S337L|PSD3_uc003wyy.2_Missense_Mutation_p.S474L|PSD3_uc003wyz.2_Missense_Mutation_p.S309L	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	1009					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		ACTCGAGTGCGACTTCTTCAG	0.498													29	66					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18413795	18413795	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18413795G>A	uc003wza.2	-	15	2955	c.2852C>T	c.(2851-2853)TCA>TTA	p.S951L	PSD3_uc003wyx.3_Missense_Mutation_p.S280L|PSD3_uc003wyy.2_Missense_Mutation_p.S417L|PSD3_uc003wyz.2_Missense_Mutation_p.S252L	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	952	Potential.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		GGGGGGATATGAGCGGTGCTC	0.488													46	153					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18725187	18725187	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18725187C>T	uc003wza.2	-	4	1734	c.1631G>A	c.(1630-1632)GGA>GAA	p.G544E		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	544	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		CGAGTACCTTCCCCAGAAAGC	0.463													19	51					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18725192	18725192	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18725192G>A	uc003wza.2	-	4	1729	c.1626C>T	c.(1624-1626)TTC>TTT	p.F542F		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	542	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		ACCTTCCCCAGAAAGCAATCT	0.458													6	67					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18725439	18725439	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18725439G>A	uc003wza.2	-	4	1482	c.1379C>T	c.(1378-1380)TCC>TTC	p.S460F		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	460					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		TGTCTCCAGGGACTCTGCACT	0.458													42	91					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18729423	18729423	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18729423C>T	uc003wza.2	-	3	1054	c.951G>A	c.(949-951)CAG>CAA	p.Q317Q		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	317					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		CTATAGGATGCTGGGTCTCTC	0.502													52	136					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18729527	18729527	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18729527C>T	uc003wza.2	-	3	950	c.847G>A	c.(847-849)GGA>AGA	p.G283R		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	283					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		CGATCACATCCCCCTGGGTGC	0.562													7	108					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18729931	18729932	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:18729931_18729932CC>TT	uc003wza.2	-	3	545_546	c.442_443GG>AA	c.(442-444)GGA>AAA	p.G148K		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	148					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		CTGTAATGTTCCGGAAATGATT	0.455													21	154					0	0	1	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19362866	19362866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:19362866C>T	uc011kyn.1	-	4	1544	c.480G>A	c.(478-480)GAG>GAA	p.E160E	CSGALNACT1_uc011kyo.1_Silent_p.E160E|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Silent_p.E159E|CSGALNACT1_uc003wzh.2_RNA	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	160	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		TAAGGCCAGTCTCCAGCTGGT	0.557													29	37					0	0	1	0	0
INTS10	55174	broad.mit.edu	37	8	19703292	19703292	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:19703292C>T	uc003wzj.2	+	16	2091	c.1960C>T	c.(1960-1962)CAA>TAA	p.Q654*		NM_018142	NP_060612	Q9NVR2	INT10_HUMAN	integrator complex subunit 10	654					snRNA processing	integrator complex	protein binding			ovary(1)	1				Colorectal(111;0.057)|COAD - Colon adenocarcinoma(73;0.215)		ACTACCCAATCAAGGAATGCT	0.398													15	52					0	0	1	0	0
SLC18A1	6570	broad.mit.edu	37	8	20035989	20035989	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:20035989G>A	uc011kyq.1	-	5	975	c.504C>T	c.(502-504)ATC>ATT	p.I168I	SLC18A1_uc003wzm.2_Silent_p.I168I|SLC18A1_uc011kyr.1_Silent_p.I168I|SLC18A1_uc003wzn.2_Silent_p.I168I|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Silent_p.I168I	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	168	Helical; (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		CAAACATGGGGATATGATATC	0.348													6	20					0	0	1	0	0
ATP6V1B2	526	broad.mit.edu	37	8	20077862	20077862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:20077862C>T	uc003wzp.2	+	14	1699	c.1485C>T	c.(1483-1485)ATC>ATT	p.I495I	ATP6V1B2_uc003wzq.1_RNA	NM_001693	NP_001684	P21281	VATB2_HUMAN	vacuolar H+ATPase B2	495					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|endomembrane system|Golgi apparatus|melanosome|plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0				Colorectal(74;0.0535)|COAD - Colon adenocarcinoma(73;0.211)		TGAAGAGAATCCCTCAGAGCA	0.463													26	103					0	0	1	0	0
DOK2	9046	broad.mit.edu	37	8	21766932	21766932	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:21766932C>T	uc003wzy.1	-	5	1222	c.1129G>A	c.(1129-1131)GAC>AAC	p.D377N	DOK2_uc003wzx.1_Missense_Mutation_p.D377N|DOK2_uc003wzz.1_Missense_Mutation_p.D223N|DOK2_uc010lth.1_Missense_Mutation_p.D223N	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	377					blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		CCAGCAGGGTCCCTGTCAGCT	0.607													25	63					0	0	1	0	0
DOK2	9046	broad.mit.edu	37	8	21769936	21769936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:21769936G>A	uc003wzy.1	-	2	242	c.149C>T	c.(148-150)CCT>CTT	p.P50L	DOK2_uc003wzx.1_Missense_Mutation_p.P50L|DOK2_uc003wzz.1_5'UTR|DOK2_uc010lth.1_Intron	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	50	PH.				blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		ACACCGACGAGGCTTCTCCGG	0.711													4	10					0	0	1	0	0
NPM2	10361	broad.mit.edu	37	8	21891760	21891760	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:21891760C>T	uc003xab.2	+	6	1163	c.505C>T	c.(505-507)CCC>TCC	p.P169S	NPM2_uc003xac.2_Missense_Mutation_p.P169S|NPM2_uc003xad.2_Missense_Mutation_p.P169S|NPM2_uc003xae.2_Missense_Mutation_p.P169S|NPM2_uc003xaf.2_Intron	NM_182795	NP_877724	Q86SE8	NPM2_HUMAN	nucleoplasmin 2	169					chromatin remodeling|embryo development|oocyte differentiation|positive regulation of meiosis|regulation of exit from mitosis|single fertilization	cytoplasmic chromatin|nuclear chromatin	histone binding|nucleic acid binding				0				Colorectal(74;8.48e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0618)		AAGGCTGGTGCCCCAGAAGCA	0.438													22	42					0	0	1	0	0
REEP4	80346	broad.mit.edu	37	8	21996484	21996484	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:21996484G>A	uc003xau.1	-	6	961	c.508C>T	c.(508-510)CCC>TCC	p.P170S	REEP4_uc010ltt.1_Intron	NM_025232	NP_079508	Q9H6H4	REEP4_HUMAN	receptor accessory protein 4	170						integral to membrane				skin(1)	1				Colorectal(74;0.00187)|COAD - Colon adenocarcinoma(73;0.061)|READ - Rectum adenocarcinoma(644;0.0993)		AGGTAGAGGGGGTCATGGTAG	0.677													8	21					0	0	1	0	0
LGI3	203190	broad.mit.edu	37	8	22006032	22006032	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22006032G>A	uc003xav.2	-	8	1577	c.1288C>T	c.(1288-1290)CGT>TGT	p.R430C	LGI3_uc010ltu.2_Missense_Mutation_p.R406C	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	430	EAR 5.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		CGGCCGGCACGAAAGTGTTTC	0.632													11	24					0	0	1	0	0
LGI3	203190	broad.mit.edu	37	8	22006104	22006104	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22006104G>A	uc003xav.2	-	8	1505	c.1216C>T	c.(1216-1218)CGC>TGC	p.R406C	LGI3_uc010ltu.2_Missense_Mutation_p.R382C	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	406	EAR 4.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		TTCTGGGTGCGACTCCACTGA	0.622													10	28					0	0	1	0	0
LGI3	203190	broad.mit.edu	37	8	22006318	22006318	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22006318G>A	uc003xav.2	-	8	1291	c.1002C>T	c.(1000-1002)GCC>GCT	p.A334A	LGI3_uc010ltu.2_Silent_p.A310A	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	334	EAR 3.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		CGATGCGGAAGGCTTCTAGGT	0.607													13	32					0	0	1	0	0
BMP1	649	broad.mit.edu	37	8	22051671	22051671	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22051671C>T	uc003xbg.2	+	10	1525	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	BMP1_uc003xba.2_Silent_p.F427F|BMP1_uc003xbb.2_Silent_p.F427F|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_Silent_p.F176F|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_Silent_p.F176F|BMP1_uc011kzc.1_Silent_p.F176F|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	427	CUB 1.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		GAAAGGGCTTCTTTGCAGTCT	0.592													30	47					0	0	1	0	0
BMP1	649	broad.mit.edu	37	8	22059407	22059407	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22059407C>T	uc003xbg.2	+	16	2443	c.2199C>T	c.(2197-2199)TTC>TTT	p.F733F	BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_3'UTR|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_3'UTR|BMP1_uc011kzc.1_Silent_p.F482F|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	733	EGF-like 2; calcium-binding (Potential).				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		GCAGTGGCTTCGTCCTCCATG	0.602													4	23					0	0	1	0	0
PHYHIP	9796	broad.mit.edu	37	8	22078966	22078966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22078966G>A	uc003xbk.3	-	6	1587	c.893C>T	c.(892-894)ACC>ATC	p.T298I	PHYHIP_uc003xbj.3_Missense_Mutation_p.T298I	NM_001099335	NP_001092805	Q92561	PHYIP_HUMAN	phytanoyl-CoA 2-hydroxylase interacting protein	298											0				Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0629)		CTCCCCCAGGGTGCCCAGGGA	0.627													29	100					0	0	1	0	0
PHYHIP	9796	broad.mit.edu	37	8	22079094	22079094	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22079094G>A	uc003xbk.3	-	6	1459	c.765C>T	c.(763-765)CCC>CCT	p.P255P	PHYHIP_uc003xbj.3_Silent_p.P255P	NM_001099335	NP_001092805	Q92561	PHYIP_HUMAN	phytanoyl-CoA 2-hydroxylase interacting protein	255											0				Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0629)		TGTCCAGGAGGGGCAGGCGGT	0.622													14	40					0	0	1	0	0
PHYHIP	9796	broad.mit.edu	37	8	22079283	22079283	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22079283C>T	uc003xbk.3	-	6	1270	c.576G>A	c.(574-576)ACG>ACA	p.T192T	PHYHIP_uc003xbj.3_Silent_p.T192T	NM_001099335	NP_001092805	Q92561	PHYIP_HUMAN	phytanoyl-CoA 2-hydroxylase interacting protein	192											0				Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0629)		GGGGCTGGCCCGTGTTGAACT	0.627													5	10					0	0	1	0	0
MIR320A	407037	broad.mit.edu	37	8	22102552	22102552	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22102552G>A	hsa-mir-320a|MI0000542	-			c.5G>A			uc011kzd.1_RNA|POLR3D_uc003xbl.2_5'Flank|POLR3D_uc003xbm.2_5'Flank|POLR3D_uc011kze.1_5'Flank																	0						GGAGGGGAGCGAAGCGCCGCC	0.642													21	72					0	0	1	0	0
POLR3D	661	broad.mit.edu	37	8	22106037	22106037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22106037C>T	uc003xbl.2	+	6	613	c.530C>T	c.(529-531)CCT>CTT	p.P177L	POLR3D_uc003xbm.2_Missense_Mutation_p.P177L|POLR3D_uc011kze.1_RNA	NM_001722	NP_001713	P05423	RPC4_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	177					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity				0				Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		CGAAATATGCCTGTGCAGCTG	0.537													40	88					0	0	1	0	0
POLR3D	661	broad.mit.edu	37	8	22107731	22107731	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22107731C>T	uc003xbl.2	+	8	1148	c.1065C>T	c.(1063-1065)TCC>TCT	p.S355S	POLR3D_uc003xbm.2_Silent_p.S355S|POLR3D_uc011kze.1_RNA	NM_001722	NP_001713	P05423	RPC4_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	355					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity				0				Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		CTGCCTGCTCCTTCCTGCAGG	0.562													17	41					0	0	1	0	0
PDLIM2	64236	broad.mit.edu	37	8	22442865	22442865	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22442865C>T	uc003xby.2	+	6	893	c.493C>T	c.(493-495)CCC>TCC	p.P165S	PDLIM2_uc003xbx.1_Missense_Mutation_p.P165S|PDLIM2_uc003xbz.2_Missense_Mutation_p.P165S|PDLIM2_uc003xca.2_Missense_Mutation_p.P165S|PDLIM2_uc003xcb.2_Missense_Mutation_p.P165S|PDLIM2_uc003xcc.1_Missense_Mutation_p.P165S	NM_021630	NP_067643	Q96JY6	PDLI2_HUMAN	PDZ and LIM domain 2 isoform 2	165						actin cytoskeleton|cell surface|cytoplasm|focal adhesion|nucleus	zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00579)|Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0626)		CCCGGGCCTCCCCGCTGCTGA	0.677													9	16					0	0	1	0	0
TNFRSF10B	8795	broad.mit.edu	37	8	22926370	22926370	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22926370C>T	uc003xcu.2	-	1	331	c.38G>A	c.(37-39)GGG>GAG	p.G13E	uc003xcw.1_Intron|TNFRSF10B_uc003xct.2_Missense_Mutation_p.G13E|TNFRSF10B_uc011kzq.1_5'UTR|TNFRSF10B_uc003xcv.2_5'UTR	NM_003842	NP_003833	O14763	TR10B_HUMAN	tumor necrosis factor receptor superfamily,	13					activation of NF-kappaB-inducing kinase activity|activation of pro-apoptotic gene products|cell surface receptor linked signaling pathway|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|positive regulation of I-kappaB kinase/NF-kappaB cascade	plasma membrane	caspase activator activity|receptor activity|TRAIL binding				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0179)|COAD - Colon adenocarcinoma(73;0.0703)		TTTCCGGGCCCCCGAAGCGGC	0.677													23	33					0	0	1	0	0
TNFRSF10C	8794	broad.mit.edu	37	8	22972217	22972217	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22972217G>A	uc003xcy.2	+	3	415	c.214G>A	c.(214-216)GGT>AGT	p.G72S	TNFRSF10C_uc011kzr.1_RNA	NM_003841	NP_003832	O14798	TR10C_HUMAN	tumor necrosis factor receptor superfamily,	72	TNFR-Cys 2.				apoptosis	anchored to membrane|integral to plasma membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		GTGCACAGAGGGTGTGGATTA	0.478													44	89					0	0	1	0	0
TNFRSF10C	8794	broad.mit.edu	37	8	22974279	22974279	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:22974279C>T	uc003xcy.2	+	5	716	c.515C>T	c.(514-516)CCG>CTG	p.P172L	TNFRSF10C_uc011kzr.1_RNA	NM_003841	NP_003832	O14798	TR10C_HUMAN	tumor necrosis factor receptor superfamily,	172	TAPE 1.				apoptosis	anchored to membrane|integral to plasma membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		AACACCAGCCCGGGGACTCCT	0.562													14	143					0	0	1	0	0
LOXL2	4017	broad.mit.edu	37	8	23177458	23177458	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:23177458G>A	uc003xdh.1	-	8	1749	c.1410C>T	c.(1408-1410)ATC>ATT	p.I470I	LOXL2_uc010lty.1_Silent_p.I9I	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	470	SRCR 4.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		TGGCCTCCACGATGCCCCAGT	0.657													27	59					0	0	1	0	0
LOXL2	4017	broad.mit.edu	37	8	23225854	23225854	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:23225854G>A	uc003xdh.1	-	2	350	c.11C>T	c.(10-12)CCT>CTT	p.P4L		NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	4					aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		GGAGCACAGAGGCCTCTCCAT	0.637													22	31					0	0	1	0	0
ENTPD4	9583	broad.mit.edu	37	8	23292929	23292929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:23292929G>A	uc003xdl.2	-	11	1600	c.1436C>T	c.(1435-1437)TCT>TTT	p.S479F	ENTPD4_uc011kzu.1_Missense_Mutation_p.S471F|ENTPD4_uc003xdm.2_Missense_Mutation_p.S471F|ENTPD4_uc011kzv.1_Missense_Mutation_p.S479F	NM_004901	NP_004892	Q9Y227	ENTP4_HUMAN	ectonucleoside triphosphate diphosphohydrolase 4	479	Lumenal (Potential).				UDP catabolic process	autophagic vacuole membrane|cytoplasmic vesicle|integral to Golgi membrane	uridine-diphosphatase activity			ovary(1)|kidney(1)	2		Prostate(55;0.114)		Colorectal(74;0.0161)|COAD - Colon adenocarcinoma(73;0.0649)		GTCAGCATGAGAGGCGTACAG	0.468													7	29					0	0	1	0	0
ENTPD4	9583	broad.mit.edu	37	8	23305332	23305332	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:23305332G>A	uc003xdl.2	-	4	437	c.273C>T	c.(271-273)ATC>ATT	p.I91I	ENTPD4_uc011kzu.1_Silent_p.I91I|ENTPD4_uc003xdm.2_Silent_p.I91I|ENTPD4_uc011kzv.1_Silent_p.I91I|ENTPD4_uc011kzw.1_Silent_p.I57I	NM_004901	NP_004892	Q9Y227	ENTP4_HUMAN	ectonucleoside triphosphate diphosphohydrolase 4	91	Lumenal (Potential).				UDP catabolic process	autophagic vacuole membrane|cytoplasmic vesicle|integral to Golgi membrane	uridine-diphosphatase activity			ovary(1)|kidney(1)	2		Prostate(55;0.114)		Colorectal(74;0.0161)|COAD - Colon adenocarcinoma(73;0.0649)		AGTCCACCACGATCCCATAGT	0.458													30	106					0	0	1	0	0
SLC25A37	51312	broad.mit.edu	37	8	23429132	23429132	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:23429132C>T	uc003xdo.2	+	4	934	c.781C>T	c.(781-783)CTT>TTT	p.L261F	SLC25A37_uc003xdp.2_RNA|SLC25A37_uc010ltz.2_RNA|SLC25A37_uc003xdq.2_RNA|uc003xds.2_5'Flank	NM_016612	NP_057696	Q9NYZ2	MFRN1_HUMAN	solute carrier family 25, member 37	261	Solcar 3.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Prostate(55;0.114)		Colorectal(74;0.0198)|COAD - Colon adenocarcinoma(73;0.0751)		CTGTAAGACCCTTCTGAACAC	0.677													10	22					0	0	1	0	0
STC1	6781	broad.mit.edu	37	8	23702404	23702404	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:23702404C>T	uc003xdw.1	-	4	907	c.623G>A	c.(622-624)CGA>CAA	p.R208Q		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	208					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GAAGTCAGCTCGTGGGTGTGT	0.557													17	77					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24167407	24167407	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24167407G>A	uc003xdy.2	+	3	234	c.151G>A	c.(151-153)GAA>AAA	p.E51K	ADAM28_uc003xdx.2_Missense_Mutation_p.E51K|ADAM28_uc011kzz.1_5'UTR|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	51					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ATTTTTGCAGGAACAATTTGA	0.234													17	112					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24170931	24170931	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24170931C>T	uc003xdy.2	+	6	497	c.414C>T	c.(412-414)TAC>TAT	p.Y138Y	ADAM28_uc003xdx.2_Silent_p.Y138Y|ADAM28_uc011kzz.1_Intron|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	138					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ATCAAAGATACTTTATTGAAC	0.403													13	58					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24171030	24171030	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24171030G>A	uc003xdy.2	+	6	596	c.513G>A	c.(511-513)ATG>ATA	p.M171I	ADAM28_uc003xdx.2_Missense_Mutation_p.M171I|ADAM28_uc011kzz.1_Intron|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	171	Cysteine switch (By similarity).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CCTGTGGGATGGATGGTGTGT	0.433													39	142					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24181469	24181469	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24181469G>A	uc003xdy.2	+	9	926	c.843G>A	c.(841-843)GGG>GGA	p.G281G	ADAM28_uc003xdx.2_Silent_p.G281G|ADAM28_uc011kzz.1_Silent_p.G48G|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_5'Flank	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	281	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AATGGAGGGGGAGTGTTCTCT	0.398													32	72					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24187498	24187498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24187498G>A	uc003xdy.2	+	11	1056	c.973G>A	c.(973-975)GAC>AAC	p.D325N	ADAM28_uc003xdx.2_Missense_Mutation_p.D325N|ADAM28_uc011kzz.1_Missense_Mutation_p.D92N|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.D12N	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	325	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ATACCTTTAGGACCACAGCGA	0.328													25	100					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24197023	24197023	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24197023G>A	uc003xdy.2	+	15	1695	c.1612G>A	c.(1612-1614)GGG>AGG	p.G538R	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.G225R	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	538	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GAATGAAGGTGGGTCAAAGTA	0.458													3	24					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24209511	24209511	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24209511G>A	uc003xdy.2	+	21	2273	c.2190G>A	c.(2188-2190)ATG>ATA	p.M730I	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.M417I	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	730	Cytoplasmic (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TGAGTCAGATGAAGCCCCATG	0.383													30	76					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24242028	24242028	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24242028G>A	uc003xdz.2	+	1	231	c.11G>A	c.(10-12)GGG>GAG	p.G4E	ADAMDEC1_uc010lub.2_5'UTR|ADAMDEC1_uc011lab.1_5'UTR	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	4					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		ATGCTGCGTGGGATCTCCCAG	0.468													12	18					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24250784	24250784	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24250784G>A	uc003xdz.2	+	3	437	c.217G>A	c.(217-219)GAA>AAA	p.E73K	ADAMDEC1_uc010lub.2_5'UTR|ADAMDEC1_uc011lab.1_5'UTR	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	73					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GGAAAGGTATGAACCTGAAGT	0.289													25	71					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24251645	24251645	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24251645G>A	uc003xdz.2	+	4	568	c.348G>A	c.(346-348)ACG>ACA	p.T116T	ADAMDEC1_uc010lub.2_Silent_p.T37T|ADAMDEC1_uc011lab.1_Silent_p.T37T	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	116					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		AAATTACCACGAAACCTGAGA	0.458													19	39					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24255255	24255255	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24255255C>T	uc003xdz.2	+	7	907	c.687C>T	c.(685-687)GCC>GCT	p.A229A	ADAMDEC1_uc010lub.2_Silent_p.A150A|ADAMDEC1_uc011lab.1_Silent_p.A150A	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	229	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TGGATAATGCCTTTGTGAGTA	0.353													8	65					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256502	24256502	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24256502G>A	uc003xdz.2	+	9	1098	c.878G>A	c.(877-879)TGG>TAG	p.W293*	ADAMDEC1_uc010lub.2_Nonsense_Mutation_p.W214*|ADAMDEC1_uc011lab.1_Nonsense_Mutation_p.W214*	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	293	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TTCCTGAGATGGCACAGTTCT	0.507													16	44					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256521	24256521	+	Silent	SNP	G	A	A	rs141164035		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24256521G>A	uc003xdz.2	+	9	1117	c.897G>A	c.(895-897)GGG>GGA	p.G299G	ADAMDEC1_uc010lub.2_Silent_p.G220G|ADAMDEC1_uc011lab.1_Silent_p.G220G	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	299	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding	p.G299G(1)		skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		CTAACCTGGGGAAAAAGATCC	0.512													17	36					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24344800	24344800	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24344800C>T	uc003xeb.2	+	11	1174	c.1061C>T	c.(1060-1062)TCA>TTA	p.S354L	ADAM7_uc003xec.2_Missense_Mutation_p.S126L	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	354	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		ACCTGTCCTTCAGGAAAATGC	0.383													16	28					0	0	1	0	0
NEFM	4741	broad.mit.edu	37	8	24773215	24773215	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24773215C>T	uc003xed.3	+	2	1211	c.1178C>T	c.(1177-1179)GCT>GTT	p.A393V	NEFM_uc011lac.1_Missense_Mutation_p.A393V|NEFM_uc010lue.2_Missense_Mutation_p.A17V	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	393	Rod.|Coil 2B.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		GTCAAGATGGCTCTGGATATA	0.547													22	37					0	0	1	0	0
NEFM	4741	broad.mit.edu	37	8	24775148	24775148	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24775148G>A	uc003xed.3	+	3	1813	c.1780G>A	c.(1780-1782)GAA>AAA	p.E594K	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Missense_Mutation_p.E218K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	594	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		aaagagtgaggaagTGGCTAC	0.249													11	26					0	0	1	0	0
NEFM	4741	broad.mit.edu	37	8	24775279	24775279	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24775279G>A	uc003xed.3	+	3	1944	c.1911G>A	c.(1909-1911)GAG>GAA	p.E637E	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Silent_p.E261E	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	637	6 X 13 AA approximate tandem repeats of K-S-P-V-[PS]-K-S-P-V-E-E-[KA]-[GAK].|2.|Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CAGTGGAAGAGAAAGGCAAGT	0.507													34	115					0	0	1	0	0
NEFM	4741	broad.mit.edu	37	8	24776027	24776027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24776027G>A	uc003xed.3	+	3	2692	c.2659G>A	c.(2659-2661)GAA>AAA	p.E887K	NEFM_uc011lac.1_Missense_Mutation_p.E669K|NEFM_uc010lue.2_Missense_Mutation_p.E511K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	887	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		TGAAGAGCATGAAGAGACCTT	0.423													48	105					0	0	1	0	0
NEFL	4747	broad.mit.edu	37	8	24810379	24810379	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24810379C>T	uc003xee.2	-	5	1678	c.1576G>A	c.(1576-1578)GAG>AAG	p.E526K		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	526	Tail.|Tail, subdomain B (acidic).				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		ttcttctcctcctcttcagct	0.239													22	65					0	0	1	0	0
NEFL	4747	broad.mit.edu	37	8	24811049	24811049	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24811049C>T	uc003xee.2	-	4	1531	c.1429G>A	c.(1429-1431)GAG>AAG	p.E477K		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	477	Tail.|Tail, subdomain B (acidic).				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		tcctcctcctcGGCTTCTCCT	0.403													6	17					0	0	1	0	0
NEFL	4747	broad.mit.edu	37	8	24811299	24811299	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:24811299C>T	uc003xee.2	-	3	1282	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	394	Rod.|Coil 2B.				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		TCCTCGCCTTCCAAGAGTTTC	0.532													7	17					0	0	1	0	0
KCTD9	54793	broad.mit.edu	37	8	25298174	25298174	+	Missense_Mutation	SNP	G	A	A	rs143658803	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:25298174G>A	uc003xeo.2	-	4	388	c.230C>T	c.(229-231)TCT>TTT	p.S77F	PPP2R2A_uc003xek.2_Intron	NM_017634	NP_060104	Q7L273	KCTD9_HUMAN	potassium channel tetramerisation domain	77	KHA.					voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		all_cancers(63;0.0164)|Ovarian(32;0.000878)|all_epithelial(46;0.00542)|Breast(100;0.0164)|Hepatocellular(4;0.114)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Epithelial(17;2.39e-12)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0438)		AGGAGGCTTAGAATCTGTCTG	0.393													28	53					0	0	1	0	0
CDCA2	157313	broad.mit.edu	37	8	25365205	25365205	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:25365205C>T	uc003xep.1	+	15	3502	c.3023C>T	c.(3022-3024)TCT>TTT	p.S1008F	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_3'UTR|CDCA2_uc003xeq.1_Missense_Mutation_p.S993F|CDCA2_uc003xer.1_Missense_Mutation_p.S671F	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	1008					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		GGAGAGAGCTCTCTGACTGCC	0.433													33	90					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25708275	25708275	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:25708275T>A	uc003xes.1	-	15	1548	c.1531A>T	c.(1531-1533)ATG>TTG	p.M511L	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	511	Pro/Ser/Thr-rich.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		CTTGATGACATGACTGGAAAG	0.348													20	45					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25718682	25718682	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:25718682G>A	uc003xes.1	-	13	1242	c.1225C>T	c.(1225-1227)CCC>TCC	p.P409S	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	409					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AGCTGGCTGGGATTCCTGGGG	0.527													39	90					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25718726	25718726	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:25718726C>T	uc003xes.1	-	13	1198	c.1181G>A	c.(1180-1182)CGA>CAA	p.R394Q	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	394					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		GTCTGCGGCTCGCTTCAAAAT	0.488													35	68					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25766052	25766052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:25766052G>A	uc003xes.1	-	7	588	c.571C>T	c.(571-573)CTC>TTC	p.L191F	PPP2R2A_uc003xek.2_Intron	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	191					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		TTGCACTTGAGGAAAAATTTT	0.363													7	66					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25890625	25890625	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:25890625G>A	uc003xes.1	-	6	544	c.527C>T	c.(526-528)CCA>CTA	p.P176L	PPP2R2A_uc003xek.2_Intron|EBF2_uc003xet.1_Missense_Mutation_p.P176L	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	176					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		TGGGTCCGATGGAGTCTCATT	0.388													8	120					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25890627	25890627	+	Silent	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:25890627A>T	uc003xes.1	-	6	542	c.525T>A	c.(523-525)ACT>ACA	p.T175T	PPP2R2A_uc003xek.2_Intron|EBF2_uc003xet.1_Silent_p.T175T	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	175					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		GGTCCGATGGAGTCTCATTTC	0.388													7	119					0	0	1	0	0
PNMA2	10687	broad.mit.edu	37	8	26365908	26365908	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:26365908G>A	uc003xez.2	-	3	1134	c.364C>T	c.(364-366)CGA>TGA	p.R122*		NM_007257	NP_009188	Q9UL42	PNMA2_HUMAN	paraneoplastic antigen MA2	122					apoptosis	nucleolus	protein binding				0		all_cancers(63;0.109)|Ovarian(32;2.61e-05)|all_epithelial(46;0.105)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0196)|Epithelial(17;3.13e-11)|Colorectal(74;0.123)		cccagggctcgaaacataccc	0													25	67					0	0	1	0	0
DPYSL2	1808	broad.mit.edu	37	8	26435788	26435788	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:26435788G>A	uc003xfb.1	+	1	368	c.18G>A	c.(16-18)AAG>AAA	p.K6K	DPYSL2_uc003xfa.2_Intron|DPYSL2_uc011lag.1_Silent_p.K6K|DPYSL2_uc010luk.1_RNA|DPYSL2_uc011lah.1_5'Flank	NM_001386	NP_001377	Q16555	DPYL2_HUMAN	dihydropyrimidinase-like 2	6					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	dihydropyrimidinase activity|protein binding			large_intestine(1)	1		all_cancers(63;0.121)|Ovarian(32;2.68e-05)|all_epithelial(46;0.116)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;3.33e-10)|Colorectal(74;0.183)		ATCAGGGGAAGAAAAATATTC	0.433													27	104					0	0	1	0	0
STMN4	81551	broad.mit.edu	37	8	27097571	27097571	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27097571C>T	uc003xfk.2	-	5	541	c.427G>A	c.(427-429)GAA>AAA	p.E143K	STMN4_uc003xfj.2_Missense_Mutation_p.E170K|STMN4_uc011lai.1_Missense_Mutation_p.E170K|STMN4_uc011laj.1_Missense_Mutation_p.E134K|STMN4_uc011lak.1_Missense_Mutation_p.E170K|STMN4_uc010luo.2_Missense_Mutation_p.E143K			Q9H169	STMN4_HUMAN	RecName: Full=Stathmin-4; AltName: Full=Stathmin-like protein B3;          Short=RB3;	143	Potential.				intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)		GCCAGTTTTTCCTTAGCCATC	0.527													28	76					0	0	1	0	0
TRIM35	23087	broad.mit.edu	37	8	27151776	27151776	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27151776G>A	uc003xfl.1	-	3	665	c.583C>T	c.(583-585)CGC>TGC	p.R195C	TRIM35_uc010lup.1_Missense_Mutation_p.R163C|TRIM35_uc003xfm.1_RNA	NM_171982	NP_741983	Q9UPQ4	TRI35_HUMAN	tripartite motif-containing 35 isoform 2	195					apoptosis|induction of apoptosis|negative regulation of mitotic cell cycle	cytoplasm|nucleus	zinc ion binding				0		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0213)|Epithelial(17;9.34e-10)|Colorectal(74;0.141)		AAGAACTCGCGAAGCTTATCA	0.577													14	58					0	0	1	0	0
TRIM35	23087	broad.mit.edu	37	8	27168522	27168522	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27168522G>A	uc003xfl.1	-	1	313	c.231C>T	c.(229-231)AAC>AAT	p.N77N	PTK2B_uc003xfn.1_5'Flank|PTK2B_uc003xfo.1_5'Flank|TRIM35_uc010lup.1_Silent_p.N77N|TRIM35_uc003xfm.1_RNA	NM_171982	NP_741983	Q9UPQ4	TRI35_HUMAN	tripartite motif-containing 35 isoform 2	77					apoptosis|induction of apoptosis|negative regulation of mitotic cell cycle	cytoplasm|nucleus	zinc ion binding				0		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0213)|Epithelial(17;9.34e-10)|Colorectal(74;0.141)		TCTCCACCAGGTTGTTGAGGG	0.697													5	9					0	0	1	0	0
PTK2B	2185	broad.mit.edu	37	8	27289779	27289779	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27289779C>T	uc003xfn.1	+	15	1696	c.888C>T	c.(886-888)CCC>CCT	p.P296P	PTK2B_uc003xfo.1_Silent_p.P296P|PTK2B_uc003xfp.1_Silent_p.P296P|PTK2B_uc003xfq.1_Silent_p.P296P|PTK2B_uc010luq.1_Silent_p.P67P|PTK2B_uc003xfr.1_Silent_p.P42P	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	296	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		TCCCACAGCCCACCTGCCTGG	0.622													8	23					0	0	1	0	0
PTK2B	2185	broad.mit.edu	37	8	27296616	27296616	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27296616C>T	uc003xfn.1	+	24	2520	c.1712C>T	c.(1711-1713)TCC>TTC	p.S571F	PTK2B_uc003xfo.1_Missense_Mutation_p.S571F|PTK2B_uc003xfp.1_Missense_Mutation_p.S571F|PTK2B_uc003xfq.1_Missense_Mutation_p.S571F|PTK2B_uc003xfr.1_Missense_Mutation_p.S317F	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	571	Protein kinase.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		TTTGGTCTTTCCCGGTACATT	0.557													29	78					0	0	1	0	0
CHRNA2	1135	broad.mit.edu	37	8	27321123	27321123	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27321123G>A	uc010lur.2	-	6	1446	c.837C>T	c.(835-837)ATC>ATT	p.I279I	CHRNA2_uc011lal.1_Silent_p.I264I|CHRNA2_uc010lus.2_Silent_p.I81I	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	279	Helical; (Potential).		I -> N (in ENFL4; markedly increases receptor sensitivity to acetylcholine).			cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	TGAGGCAGGAGATGAGCAGGC	0.607													16	44					0	0	1	0	0
CHRNA2	1135	broad.mit.edu	37	8	27321384	27321384	+	Silent	SNP	G	A	A	rs148009259		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27321384G>A	uc010lur.2	-	6	1185	c.576C>T	c.(574-576)TTC>TTT	p.F192F	CHRNA2_uc011lal.1_Silent_p.F177F|CHRNA2_uc010lus.2_Intron	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	192	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	TCTGCTGGTCGAAGGGGAAGA	0.567													47	92					0	0	1	0	0
EPHX2	2053	broad.mit.edu	37	8	27348760	27348760	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27348760G>A	uc003xfu.2	+	1	116	c.35G>A	c.(34-36)GGG>GAG	p.G12E	EPHX2_uc010lut.1_Missense_Mutation_p.G12E|EPHX2_uc010luu.2_Missense_Mutation_p.G12E|EPHX2_uc010luv.2_5'UTR|EPHX2_uc003xfv.2_5'UTR|EPHX2_uc010luw.2_5'UTR	NM_001979	NP_001970	P34913	HYES_HUMAN	epoxide hydrolase 2, cytoplasmic	12	Phosphatase.				aromatic compound catabolic process|cellular calcium ion homeostasis|drug metabolic process|inflammatory response|positive regulation of vasodilation|reactive oxygen species metabolic process|regulation of blood pressure|response to toxin|xenobiotic metabolic process	cytosol|focal adhesion|Golgi apparatus|nucleolus|peroxisome|soluble fraction	epoxide hydrolase activity|metal ion binding|protein homodimerization activity			ovary(1)	1		Ovarian(32;2.61e-05)|all_epithelial(46;0.207)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0226)|Epithelial(17;1.12e-09)|Colorectal(74;0.157)	Tamoxifen(DB00675)	GACCTTGACGGGGTGCTGGCG	0.741													5	8					0	0	1	0	0
CLU	1191	broad.mit.edu	37	8	27457323	27457323	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27457323C>T	uc003xfw.1	-	6	1196	c.1138G>A	c.(1138-1140)GAC>AAC	p.D380N	CLU_uc010lux.1_Missense_Mutation_p.D245N|CLU_uc003xfx.1_Missense_Mutation_p.D380N|CLU_uc003xfy.1_Missense_Mutation_p.D391N|CLU_uc003xfz.1_Missense_Mutation_p.D432N	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	380					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		TAGTACTGGTCTTCGCCTTGC	0.602													3	19					0	0	1	0	0
CLU	1191	broad.mit.edu	37	8	27463978	27463978	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27463978C>T	uc003xfw.1	-	3	368	c.310G>A	c.(310-312)GAG>AAG	p.E104K	CLU_uc010lux.1_Intron|CLU_uc003xfx.1_Missense_Mutation_p.E104K|CLU_uc003xfy.1_Missense_Mutation_p.E115K|CLU_uc003xfz.1_Missense_Mutation_p.E156K	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	104					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		ATCATGGTCTCATTGCACACT	0.552													51	145					0	0	1	0	0
SCARA3	51435	broad.mit.edu	37	8	27516538	27516538	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27516538G>A	uc003xga.1	+	5	992	c.851G>A	c.(850-852)GGG>GAG	p.G284E	SCARA3_uc003xgb.1_Missense_Mutation_p.G284E	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	284	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		GCCACCCTGGGGGCCTCCTCA	0.597													14	32					0	0	1	0	0
SCARA3	51435	broad.mit.edu	37	8	27516588	27516588	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27516588G>A	uc003xga.1	+	5	1042	c.901G>A	c.(901-903)GTA>ATA	p.V301I	SCARA3_uc003xgb.1_Missense_Mutation_p.V301I	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	301	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		GCACGACCTGGTACTCCAGGT	0.562													20	42					0	0	1	0	0
SCARA3	51435	broad.mit.edu	37	8	27528443	27528443	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27528443G>A	uc003xga.1	+	6	1537	c.1396G>A	c.(1396-1398)GGA>AGA	p.G466R	SCARA3_uc003xgb.1_Intron	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	466	Collagen-like 1.|Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		AGGACCAAGAGGATTCAAAGG	0.662													31	133					0	0	1	0	0
SCARA3	51435	broad.mit.edu	37	8	27528597	27528597	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27528597G>A	uc003xga.1	+	6	1691	c.1550G>A	c.(1549-1551)GGG>GAG	p.G517E	SCARA3_uc003xgb.1_Intron	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	517	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		GGCCCTCGAGGGTTCCCAGGC	0.687													5	20					0	0	1	0	0
ESCO2	157570	broad.mit.edu	37	8	27660931	27660931	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27660931C>T	uc003xgg.2	+	11	1865	c.1782C>T	c.(1780-1782)TTC>TTT	p.F594F	ESCO2_uc010luy.1_Intron	NM_001017420	NP_001017420	Q56NI9	ESCO2_HUMAN	establishment of cohesion 1 homolog 2	594					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			central_nervous_system(1)	1		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|KIRC - Kidney renal clear cell carcinoma(542;0.0955)|Kidney(114;0.115)|Colorectal(74;0.132)		CCCCTAATTTCCTCGTATATA	0.323									SC_Phocomelia_syndrome				26	65					0	0	1	0	0
C8orf80	389643	broad.mit.edu	37	8	27925193	27925193	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:27925193C>T	uc003xgm.3	-	6	692	c.549G>A	c.(547-549)GAG>GAA	p.E183E		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	183	Potential.					nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		ACGCATCTGCCTCTTCTCTGC	0.537													9	34					0	0	1	0	0
ZNF395	55893	broad.mit.edu	37	8	28209208	28209208	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:28209208G>A	uc003xgq.2	-	7	1125	c.1037C>T	c.(1036-1038)CCT>CTT	p.P346L	ZNF395_uc003xgt.2_Missense_Mutation_p.P346L|ZNF395_uc003xgr.2_Missense_Mutation_p.P346L|ZNF395_uc003xgs.2_Missense_Mutation_p.P346L	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	346					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		GGGAGTCCCAGGGACTGGGGT	0.527													11	98					0	0	1	0	0
EXTL3	2137	broad.mit.edu	37	8	28574438	28574438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:28574438C>T	uc003xgz.1	+	3	1455	c.862C>T	c.(862-864)CTC>TTC	p.L288F		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	288	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		ACAGAACCTTCTCTATAACGT	0.522													8	43					0	0	1	0	0
EXTL3	2137	broad.mit.edu	37	8	28575418	28575418	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:28575418C>T	uc003xgz.1	+	3	2435	c.1842C>T	c.(1840-1842)TTC>TTT	p.F614F		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	614	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		TCCATCTTTTCCCCCACACTC	0.572													22	116					0	0	1	0	0
INTS9	55756	broad.mit.edu	37	8	28695168	28695168	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:28695168G>A	uc003xha.2	-	5	686	c.387C>T	c.(385-387)ACC>ACT	p.T129T	INTS9_uc011lav.1_Silent_p.T105T|INTS9_uc011law.1_Silent_p.T108T|INTS9_uc011lax.1_Silent_p.T22T|INTS9_uc010lvc.2_RNA|INTS9_uc003xhb.2_Silent_p.T129T	NM_018250	NP_060720	Q9NV88	INT9_HUMAN	integrator complex subunit 9 isoform 1	129					snRNA processing	integrator complex	protein binding			central_nervous_system(1)|pancreas(1)	2		Ovarian(32;0.0439)		KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.152)		CGATCTGGACGGTGGGTTCCG	0.532													5	30					0	0	1	0	0
KIF13B	23303	broad.mit.edu	37	8	28928094	28928094	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:28928094G>A	uc003xhh.3	-	40	5467	c.5408C>T	c.(5407-5409)TCG>TTG	p.S1803L	KIF13B_uc011laz.1_Missense_Mutation_p.S322L	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	1803					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		AGCTGTCAGCGAGGCCAGGTT	0.706													6	12					0	0	1	0	0
DUSP4	1846	broad.mit.edu	37	8	29194715	29194715	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:29194715G>A	uc003xhm.2	-	4	1403	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F	DUSP4_uc003xhl.2_Missense_Mutation_p.S247F	NM_001394	NP_001385	Q13115	DUS4_HUMAN	dual specificity phosphatase 4 isoform 1	338	Tyrosine-protein phosphatase.				endoderm formation|inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/threonine phosphatase activity			lung(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.094)|Kidney(114;0.113)		CGCAGCACAGGACGTGGCCAG	0.662													9	26					0	0	1	0	0
DUSP4	1846	broad.mit.edu	37	8	29194912	29194912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:29194912G>A	uc003xhm.2	-	4	1206	c.816C>T	c.(814-816)TGC>TGT	p.C272C	DUSP4_uc003xhl.2_Silent_p.C181C	NM_001394	NP_001385	Q13115	DUS4_HUMAN	dual specificity phosphatase 4 isoform 1	272	Tyrosine-protein phosphatase.				endoderm formation|inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/threonine phosphatase activity			lung(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.094)|Kidney(114;0.113)		CGCGCCCACGGCAGTCCTTCA	0.667													21	74					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	30210015	30210015	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30210015G>A	uc003xhz.2	+	1	497	c.492G>A	c.(490-492)ATG>ATA	p.M164I						SubName: Full=Class IVb beta tubulin;																		ATCGCATCATGAATACCTTCA	0.532													18	39					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	30210064	30210064	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30210064G>A	uc003xhz.2	+	1	546	c.541G>A	c.(541-543)GAG>AAG	p.E181K						SubName: Full=Class IVb beta tubulin;																		CACCGTGATCGAGTCCTACAA	0.498													21	40					0	0	1	0	0
GSR	2936	broad.mit.edu	37	8	30538495	30538495	+	Missense_Mutation	SNP	G	A	A	rs3180947		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30538495G>A	uc003xih.1	-	12	1436	c.1345C>T	c.(1345-1347)CCG>TCG	p.P449S		NM_000637	NP_000628	P00390	GSHR_HUMAN	glutathione reductase precursor	449					cell redox homeostasis|nucleobase, nucleoside and nucleotide interconversion	cytosol|mitochondrion	electron carrier activity|glutathione-disulfide reductase activity			ovary(2)|pancreas(2)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(542;0.105)|Kidney(114;0.125)	Carmustine(DB00262)|Glutathione(DB00143)|NADH(DB00157)	TGATACATCGGGGTAAAGCTC	0.338													14	180					0	0	1	0	0
GSR	2936	broad.mit.edu	37	8	30560722	30560722	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30560722G>A	uc003xih.1	-	5	619	c.528C>T	c.(526-528)TTC>TTT	p.F176F		NM_000637	NP_000628	P00390	GSHR_HUMAN	glutathione reductase precursor	176					cell redox homeostasis|nucleobase, nucleoside and nucleotide interconversion	cytosol|mitochondrion	electron carrier activity|glutathione-disulfide reductase activity			ovary(2)|pancreas(2)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(542;0.105)|Kidney(114;0.125)	Carmustine(DB00262)|Glutathione(DB00143)|NADH(DB00157)	GATCACTCGTGAAGGCTGCAT	0.483													38	88					0	0	1	0	0
GSR	2936	broad.mit.edu	37	8	30567359	30567359	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30567359G>A	uc003xih.1	-	3	485	c.394C>T	c.(394-396)CCA>TCA	p.P132S		NM_000637	NP_000628	P00390	GSHR_HUMAN	glutathione reductase precursor	132					cell redox homeostasis|nucleobase, nucleoside and nucleotide interconversion	cytosol|mitochondrion	electron carrier activity|glutathione-disulfide reductase activity			ovary(2)|pancreas(2)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(542;0.105)|Kidney(114;0.125)	Carmustine(DB00262)|Glutathione(DB00143)|NADH(DB00157)	TCACAACTTGGAAAGCCATAA	0.363													9	33					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30701523	30701523	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30701523C>T	uc003xil.2	-	1	5011	c.5011G>A	c.(5011-5013)GAC>AAC	p.D1671N		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1671										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AGGTTTTGGTCTACCAACAGT	0.338													23	80					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30702720	30702720	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30702720C>T	uc003xil.2	-	1	3814	c.3814G>A	c.(3814-3816)GAT>AAT	p.D1272N		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1272										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		ACATTTGAATCTAAGACTGAT	0.343													17	64					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30702748	30702748	+	Silent	SNP	C	T	T	rs112301482		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30702748C>T	uc003xil.2	-	1	3786	c.3786G>A	c.(3784-3786)GCG>GCA	p.A1262A		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1262										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CGTCAGTTTTCGCCTTTGTGT	0.313													14	73					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30703584	30703584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30703584C>T	uc003xil.2	-	1	2950	c.2950G>A	c.(2950-2952)GAA>AAA	p.E984K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	984										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AAAGATGCTTCATCACTTAGG	0.348													37	141					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30704350	30704350	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30704350C>T	uc003xil.2	-	1	2184	c.2184G>A	c.(2182-2184)GGG>GGA	p.G728G		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	728										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTTCCATCTCCCCGTTATCAA	0.388													16	129					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30705246	30705246	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30705246C>T	uc003xil.2	-	1	1288	c.1288G>A	c.(1288-1290)GAA>AAA	p.E430K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	430										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GACACTGGTTCATTTTCATTT	0.338													43	157					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30705252	30705252	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30705252C>T	uc003xil.2	-	1	1282	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	428										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GGTTCATTTTCATTTTTCCTA	0.338													41	151					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30705332	30705332	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30705332G>A	uc003xil.2	-	1	1202	c.1202C>T	c.(1201-1203)TCA>TTA	p.S401L		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	401										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GTTATAAGATGAAATAACTGT	0.333													19	99					0	0	1	0	0
PURG	29942	broad.mit.edu	37	8	30889533	30889533	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30889533C>T	uc003xin.2	-	1	785	c.766G>A	c.(766-768)GAT>AAT	p.D256N	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.D256N	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	256	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		AGCGGGTCATCGTCTCCACCT	0.453													26	65					0	0	1	0	0
PURG	29942	broad.mit.edu	37	8	30889719	30889719	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30889719G>A	uc003xin.2	-	1	599	c.580C>T	c.(580-582)CGC>TGC	p.R194C	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.R194C	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	194	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		CGTAGGAAGCGACCCCGCTGA	0.488													29	83					0	0	1	0	0
PURG	29942	broad.mit.edu	37	8	30889982	30889982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30889982G>A	uc003xin.2	-	1	336	c.317C>T	c.(316-318)ACC>ATC	p.T106I	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.T106I	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	106	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		CAGGGAGAGGGTCAGTTTACT	0.577													24	61					0	0	1	0	0
WRN	7486	broad.mit.edu	37	8	30948420	30948420	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:30948420C>T	uc003xio.3	+	15	2579	c.1791C>T	c.(1789-1791)CCC>CCT	p.P597P	WRN_uc010lvk.2_Silent_p.P64P	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	597	Helicase ATP-binding.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TTATCTCTCCCCTTATTTCTC	0.353			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				25	134					0	0	1	0	0
NRG1	3084	broad.mit.edu	37	8	31498133	31498133	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:31498133C>T	uc003xip.2	+	1	866	c.633C>T	c.(631-633)CCC>CCT	p.P211P		NM_013962	NP_039256	Q02297	NRG1_HUMAN	neuregulin 1 isoform GGF2	594	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		TCATGGAGCCCGACGCCAACA	0.687													8	44					0	0	1	0	0
NRG1	3084	broad.mit.edu	37	8	32585567	32585567	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:32585567C>T	uc003xiv.2	+	6	1120	c.603C>T	c.(601-603)GAC>GAT	p.D201D	NRG1_uc003xip.2_Silent_p.D382D|NRG1_uc003xir.2_Silent_p.D201D|NRG1_uc010lvl.2_Silent_p.D184D|NRG1_uc010lvm.2_Silent_p.D167D|NRG1_uc010lvn.2_Silent_p.D167D|NRG1_uc003xis.2_Silent_p.D201D|NRG1_uc011lbf.1_Silent_p.D201D|NRG1_uc010lvo.2_Silent_p.D201D|NRG1_uc003xiu.2_Silent_p.D201D|NRG1_uc003xiw.2_Silent_p.D201D|NRG1_uc003xit.2_Silent_p.D201D|NRG1_uc010lvr.2_5'UTR|NRG1_uc010lvs.2_5'UTR|NRG1_uc010lvp.2_Silent_p.D150D|NRG1_uc010lvq.2_Silent_p.D133D|NRG1_uc003xix.2_Silent_p.D91D|NRG1_uc003xiy.2_Silent_p.D256D|NRG1_uc010lvt.2_Intron|NRG1_uc011lbg.1_Silent_p.D47D|NRG1_uc011lbh.1_Silent_p.D47D|NRG1_uc003xiz.1_RNA|NRG1_uc003xja.2_Silent_p.D4D	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	201	Extracellular (Potential).|EGF-like.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		TGGTGAAAGACCTTTCAAACC	0.423													25	92					0	0	1	0	0
DUSP26	78986	broad.mit.edu	37	8	33449694	33449694	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:33449694C>T	uc003xjp.2	-	4	806	c.473G>A	c.(472-474)CGA>CAA	p.R158Q	DUSP26_uc003xjq.2_Missense_Mutation_p.R158Q	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	158	Tyrosine-protein phosphatase.					Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		GGTGGCGGATCGGCTCACGCC	0.577													9	18					0	0	1	0	0
DUSP26	78986	broad.mit.edu	37	8	33454981	33454981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:33454981G>A	uc003xjp.2	-	2	386	c.53C>T	c.(52-54)TCC>TTC	p.S18F	DUSP26_uc003xjq.2_Missense_Mutation_p.S18F	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	18						Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		GCTACTCCGGGAGAAGCGGGC	0.552													10	38					0	0	1	0	0
DUSP26	78986	broad.mit.edu	37	8	33454988	33454988	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:33454988G>A	uc003xjp.2	-	2	379	c.46C>T	c.(46-48)CGC>TGC	p.R16C	DUSP26_uc003xjq.2_Missense_Mutation_p.R16C	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	16						Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		CGGGAGAAGCGGGCCATAAAA	0.542													7	39					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35406833	35406833	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:35406833C>T	uc003xjr.1	+	2	455	c.127C>T	c.(127-129)CCC>TCC	p.P43S	UNC5D_uc003xjs.1_Missense_Mutation_p.P38S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	43	Extracellular (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CGAAGCCCTTCCCGAATCCAT	0.468													6	68					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35406890	35406890	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:35406890G>A	uc003xjr.1	+	2	512	c.184G>A	c.(184-186)GAT>AAT	p.D62N	UNC5D_uc003xjs.1_Missense_Mutation_p.D57N	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	62	Extracellular (Potential).|Ig-like.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GGAGCCAGATGATGCTTATAT	0.483													13	45					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35616947	35616947	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:35616947C>T	uc003xjr.1	+	14	2601	c.2273C>T	c.(2272-2274)CCC>CTC	p.P758L	UNC5D_uc003xjs.1_Missense_Mutation_p.P753L|UNC5D_uc003xju.1_Missense_Mutation_p.P334L	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	758	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CTTGATATTCCCCCATTCCTC	0.448													39	155					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35624433	35624433	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:35624433C>A	uc003xjr.1	+	15	2655	c.2327C>A	c.(2326-2328)TCC>TAC	p.S776Y	UNC5D_uc003xjs.1_Missense_Mutation_p.S771Y|UNC5D_uc003xju.1_Missense_Mutation_p.S352Y	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	776	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GTCCCGTTCTCCCGCGTGTGG	0.542													9	44					0.00621372	0.00621667	1	1	0
UNC5D	137970	broad.mit.edu	37	8	35648033	35648033	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:35648033C>T	uc003xjr.1	+	17	3142	c.2814C>T	c.(2812-2814)TCC>TCT	p.S938S	UNC5D_uc003xjs.1_Silent_p.S933S|UNC5D_uc003xju.1_Silent_p.S514S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	938	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TTTCAGAATCCCAGCTTGATG	0.502													20	50					0	0	1	0	0
GPR124	25960	broad.mit.edu	37	8	37689061	37689061	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:37689061C>T	uc003xkj.2	+	8	1416	c.1053C>T	c.(1051-1053)TCC>TCT	p.S351S	GPR124_uc010lvy.2_Silent_p.S351S	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	351	Extracellular (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			CCTCTGCCTCCTACTGCCCCG	0.662													12	31					0	0	1	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37732434	37732434	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:37732434G>A	uc003xkm.1	-	3	1265	c.1221C>T	c.(1219-1221)GAC>GAT	p.D407D	RAB11FIP1_uc010lvz.1_Silent_p.D255D|RAB11FIP1_uc003xkn.1_Silent_p.D407D|RAB11FIP1_uc003xkl.1_5'Flank|RAB11FIP1_uc003xko.1_5'Flank|RAB11FIP1_uc003xkp.1_Silent_p.D255D	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	407					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			TTTCCCTGAGGTCCCCACTGA	0.562													25	74					0	0	1	0	0
DDHD2	23259	broad.mit.edu	37	8	38110573	38110573	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:38110573C>T	uc003xlb.2	+	15	2196	c.1819C>T	c.(1819-1821)CCT>TCT	p.P607S	DDHD2_uc003xlc.2_Missense_Mutation_p.P607S|DDHD2_uc003xld.2_Missense_Mutation_p.P226S	NM_015214	NP_056029	O94830	DDHD2_HUMAN	DDHD domain containing 2 isoform 1	607	DDHD.				lipid catabolic process	centrosome	hydrolase activity|metal ion binding			large_intestine(1)|ovary(1)	2	Colorectal(12;0.000442)	all_lung(54;0.0657)|Lung NSC(58;0.175)	BRCA - Breast invasive adenocarcinoma(5;3.76e-25)|COAD - Colon adenocarcinoma(9;0.0977)			AGCTCCATACCCTGCCTTACA	0.483													7	65					0	0	1	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38187400	38187400	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:38187400G>A	uc003xli.2	-	6	1595	c.1077C>T	c.(1075-1077)CCC>CCT	p.P359P	WHSC1L1_uc011lbm.1_Silent_p.P359P|WHSC1L1_uc010lwe.2_Silent_p.P359P|WHSC1L1_uc003xlj.2_Silent_p.P359P	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	359					cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			TCTGAGGTCGGGGTTTCCGAA	0.363			T	NUP98	AML								21	74					0	0	1	0	0
LETM2	137994	broad.mit.edu	37	8	38258410	38258410	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:38258410C>T	uc003xlm.1	+	6	853	c.682C>T	c.(682-684)CGC>TGC	p.R228C	LETM2_uc011lbn.1_Missense_Mutation_p.R72C|LETM2_uc003xll.1_Missense_Mutation_p.R180C|LETM2_uc003xln.1_Missense_Mutation_p.R72C|LETM2_uc003xlo.1_Missense_Mutation_p.R72C	NM_144652	NP_653253	Q2VYF4	LETM2_HUMAN	leucine zipper-EF-hand containing transmembrane	275	LETM1.|Mitochondrial matrix (Potential).					integral to membrane|mitochondrial inner membrane					0	all_cancers(2;6.77e-47)|all_epithelial(2;1.01e-50)|all_lung(3;1.25e-23)|Lung NSC(2;2.76e-23)|Colorectal(12;0.000442)|Esophageal squamous(3;0.00202)	all_lung(54;0.0657)|Hepatocellular(245;0.152)|Lung NSC(58;0.175)	Epithelial(3;1.17e-42)|all cancers(3;5.44e-38)|BRCA - Breast invasive adenocarcinoma(5;5.44e-27)|LUSC - Lung squamous cell carcinoma(2;7.12e-25)|Lung(2;4.49e-22)|COAD - Colon adenocarcinoma(9;0.114)			GGAGATAGTTCGCTTCTCCAA	0.463													61	107					0	0	1	0	0
C8orf86	389649	broad.mit.edu	37	8	38370017	38370017	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:38370017C>T	uc003xlx.1	-	3	585	c.560G>A	c.(559-561)GGA>GAA	p.G187E		NM_207412	NP_997295	Q6ZUL3	CH086_HUMAN	hypothetical protein LOC389649	187											0						atgtgcatttccaatcagttc	0													34	85					0	0	1	0	0
C8orf86	389649	broad.mit.edu	37	8	38370085	38370085	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:38370085G>A	uc003xlx.1	-	3	517	c.492C>T	c.(490-492)CTC>CTT	p.L164L		NM_207412	NP_997295	Q6ZUL3	CH086_HUMAN	hypothetical protein LOC389649	164											0						gaggactgcggaggcttgaga	0.015													7	76					0	0	1	0	0
ADAM32	203102	broad.mit.edu	37	8	39068745	39068745	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39068745C>T	uc003xmt.3	+	12	1380	c.1135C>T	c.(1135-1137)CTT>TTT	p.L379F	ADAM32_uc011lch.1_Intron|ADAM32_uc003xmu.3_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	379	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TGTCAAATGTCTTCAGAATAA	0.393													11	15					0	0	1	0	0
ADAM32	203102	broad.mit.edu	37	8	39089647	39089647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39089647G>A	uc003xmt.3	+	15	1872	c.1627G>A	c.(1627-1629)GGA>AGA	p.G543R	ADAM32_uc011lch.1_Missense_Mutation_p.G444R|ADAM32_uc003xmu.3_Missense_Mutation_p.G437R|ADAM32_uc003xmv.2_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	543	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TGTGTTCTGTGGATGGAGGTA	0.269													15	73					0	0	1	0	0
ADAM32	203102	broad.mit.edu	37	8	39114774	39114774	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39114774C>T	uc003xmt.3	+	19	2319	c.2074C>T	c.(2074-2076)CCT>TCT	p.P692S	ADAM32_uc011lch.1_Missense_Mutation_p.P593S|ADAM32_uc003xmu.3_Missense_Mutation_p.P586S|ADAM32_uc003xmv.2_Missense_Mutation_p.P116S	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	692	Helical; (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			CATTGCTCTTCCTATTCTCAT	0.378													25	75					0	0	1	0	0
ADAM32	203102	broad.mit.edu	37	8	39114782	39114782	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39114782C>T	uc003xmt.3	+	19	2327	c.2082C>T	c.(2080-2082)CTC>CTT	p.L694L	ADAM32_uc011lch.1_Silent_p.L595L|ADAM32_uc003xmu.3_Silent_p.L588L|ADAM32_uc003xmv.2_Silent_p.L118L	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	694	Helical; (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TTCCTATTCTCATTGTAACAA	0.388													26	78					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39442854	39442854	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39442854G>A	uc003xni.2	+	2	115	c.115G>A	c.(115-117)GAA>AAA	p.E39K	ADAM18_uc003xnh.2_Missense_Mutation_p.E39K|ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.E39K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	39					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AAATGACAGTGAAGTTTCAGA	0.313													25	49					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39495058	39495059	+	Missense_Mutation	DNP	GT	AC	AC			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39495058_39495059GT>AC	uc003xni.2	+	9	663_664	c.663_664GT>AC	c.(661-666)ATGTTT>ATACTT	p.221_222MF>IL	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.197_198MF>IL	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	221_222	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ATTTTTAGATGTTTACCCAGTT	0.292													10	35					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39525587	39525587	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39525587G>A	uc003xni.2	+	14	1397	c.1397G>A	c.(1396-1398)GGA>GAA	p.G466E	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.G442E	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	466	Disintegrin.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TACTGCAATGGAACCTCTAGT	0.393													61	125					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39535000	39535000	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39535000G>A	uc003xni.2	+	15	1576	c.1576G>A	c.(1576-1578)GAA>AAA	p.E526K	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.E502K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	526	Cys-rich.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TTCTCTGCATGAAAGATCTGA	0.308													16	56					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39564382	39564382	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39564382C>T	uc003xni.2	+	18	1976	c.1976C>T	c.(1975-1977)TCC>TTC	p.S659F	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.S635F	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	659	Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CAGTTTGGTTCCCCAGGGGGT	0.318													10	64					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39581281	39581281	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39581281G>A	uc003xni.2	+	19	2032	c.2032G>A	c.(2032-2034)GAA>AAA	p.E678K	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.E654K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	678	Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CTTTTATACTGAAAAAGGCTA	0.299													35	71					0	0	1	0	0
ADAM2	2515	broad.mit.edu	37	8	39606906	39606906	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39606906G>A	uc003xnj.2	-	18	2014	c.1939C>T	c.(1939-1941)CAA>TAA	p.Q647*	ADAM2_uc003xnk.2_Nonsense_Mutation_p.Q628*|ADAM2_uc011lck.1_Nonsense_Mutation_p.Q584*|ADAM2_uc003xnl.2_Nonsense_Mutation_p.Q491*	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	647	Extracellular (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		AGATCTGATTGAACTGAGCAA	0.373													36	120					0	0	1	0	0
ADAM2	2515	broad.mit.edu	37	8	39613254	39613254	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39613254G>A	uc003xnj.2	-	16	1865	c.1790C>T	c.(1789-1791)TCA>TTA	p.S597L	ADAM2_uc003xnk.2_Missense_Mutation_p.S578L|ADAM2_uc011lck.1_Intron|ADAM2_uc003xnl.2_Missense_Mutation_p.S441L	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	597	Extracellular (Potential).|Cys-rich.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TACCTTATTTGAACCACAAGA	0.299													12	28					0	0	1	0	0
ADAM2	2515	broad.mit.edu	37	8	39645728	39645728	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39645728C>T	uc003xnj.2	-	9	760	c.685G>A	c.(685-687)GAG>AAG	p.E229K	ADAM2_uc003xnk.2_Missense_Mutation_p.E210K|ADAM2_uc011lck.1_Missense_Mutation_p.E229K|ADAM2_uc003xnl.2_Intron	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	229	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		ATCCAAAGCTCCAATGAAGAC	0.274													17	86					0	0	1	0	0
ADAM2	2515	broad.mit.edu	37	8	39645736	39645736	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39645736G>A	uc003xnj.2	-	9	752	c.677C>T	c.(676-678)TCT>TTT	p.S226F	ADAM2_uc003xnk.2_Missense_Mutation_p.S207F|ADAM2_uc011lck.1_Missense_Mutation_p.S226F|ADAM2_uc003xnl.2_Intron	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	226	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CTCCAATGAAGACAGAATAAT	0.259													32	66					0	0	1	0	0
ADAM2	2515	broad.mit.edu	37	8	39678528	39678528	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39678528C>T	uc003xnj.2	-	6	581	c.506G>A	c.(505-507)AGC>AAC	p.S169N	ADAM2_uc003xnk.2_Missense_Mutation_p.S169N|ADAM2_uc011lck.1_Missense_Mutation_p.S169N|ADAM2_uc003xnl.2_Missense_Mutation_p.S169N	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	169					cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TACCTCTACGCTTTGTAATTT	0.294													31	75					0	0	1	0	0
IDO2	169355	broad.mit.edu	37	8	39821156	39821156	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39821156G>A	uc010lwy.1	+	3	410	c.168G>A	c.(166-168)TGG>TGA	p.W56*	IDO2_uc003xno.1_RNA	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	43					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						ATAGGCCTTGGATGGAAATTG	0.398													6	16					0	0	1	0	0
IDO2	169355	broad.mit.edu	37	8	39871124	39871124	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39871124G>A	uc010lwy.1	+	10	1041	c.799G>A	c.(799-801)GAA>AAA	p.E267K	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Missense_Mutation_p.E8K|IDO2_uc003xnp.1_Missense_Mutation_p.E8K	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	254					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						GCTGATGTATGAAGGAGTTTC	0.483													18	77					0	0	1	0	0
IDO2	169355	broad.mit.edu	37	8	39871208	39871208	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39871208G>A	uc010lwy.1	+	10	1125	c.883G>A	c.(883-885)GGC>AGC	p.G295S	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Missense_Mutation_p.G36S|IDO2_uc003xnp.1_Missense_Mutation_p.G36S	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	282					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						TGAGTTCTTAGGCATTCGTCA	0.458													8	42					0	0	1	0	0
IDO2	169355	broad.mit.edu	37	8	39872801	39872801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:39872801C>T	uc010lwy.1	+	11	1185	c.943C>T	c.(943-945)CCT>TCT	p.P315S	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Missense_Mutation_p.P56S|IDO2_uc003xnp.1_Missense_Mutation_p.P56S	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	302					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						TTACATGCCTCCTTCCCATAA	0.463													25	58					0	0	1	0	0
ZMAT4	79698	broad.mit.edu	37	8	40532323	40532323	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:40532323C>T	uc003xnr.2	-	5	623	c.477G>A	c.(475-477)ATG>ATA	p.M159I	ZMAT4_uc003xns.2_Intron	NM_024645	NP_078921	Q9H898	ZMAT4_HUMAN	zinc finger, matrin type 4 isoform a	159	Matrin-type 3.					nucleus	DNA binding|zinc ion binding			pancreas(1)|central_nervous_system(1)|skin(1)	3	Ovarian(28;0.00724)|Colorectal(14;0.0468)	all_cancers(7;0.00936)|all_epithelial(6;3.53e-06)|all_lung(54;0.0318)|Lung NSC(58;0.0919)|Esophageal squamous(32;0.15)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;0.00722)			GTTGCTGGGCCATCAGAGGGT	0.493													46	204					0	0	1	0	0
ZMAT4	79698	broad.mit.edu	37	8	40554830	40554830	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:40554830G>A	uc003xnr.2	-	4	429	c.283C>T	c.(283-285)CAA>TAA	p.Q95*	ZMAT4_uc003xns.2_Nonsense_Mutation_p.Q95*	NM_024645	NP_078921	Q9H898	ZMAT4_HUMAN	zinc finger, matrin type 4 isoform a	95	Matrin-type 2.					nucleus	DNA binding|zinc ion binding			pancreas(1)|central_nervous_system(1)|skin(1)	3	Ovarian(28;0.00724)|Colorectal(14;0.0468)	all_cancers(7;0.00936)|all_epithelial(6;3.53e-06)|all_lung(54;0.0318)|Lung NSC(58;0.0919)|Esophageal squamous(32;0.15)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;0.00722)			ATTTTGCCTTGATAATGGGAA	0.517													43	123					0	0	1	0	0
GOLGA7	51125	broad.mit.edu	37	8	41355058	41355058	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41355058C>T	uc003xnu.2	+	3	220	c.142C>T	c.(142-144)CGA>TGA	p.R48*	GOLGA7_uc003xnv.2_RNA|GOLGA7_uc003xnw.2_Nonsense_Mutation_p.R48*	NM_016099	NP_057183	Q7Z5G4	GOGA7_HUMAN	golgi autoantigen, golgin subfamily a, 7	48						Golgi membrane				breast(1)	1	Ovarian(28;0.014)|Colorectal(14;0.0234)|Lung SC(25;0.211)	all_lung(54;0.000771)|Lung NSC(58;0.0031)|Hepatocellular(245;0.014)|Esophageal squamous(32;0.0559)	Colorectal(10;0.0014)|OV - Ovarian serous cystadenocarcinoma(14;0.00596)|LUSC - Lung squamous cell carcinoma(45;0.0137)|COAD - Colon adenocarcinoma(11;0.0147)			AGAAACAGTTCGAACTCTAAA	0.348													76	137					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41525800	41525800	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41525800G>A	uc003xok.2	-	39	5463	c.5379C>T	c.(5377-5379)TTC>TTT	p.F1793F	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.F947F|ANK1_uc003xoi.2_Silent_p.F1793F|ANK1_uc003xoj.2_Silent_p.F1793F|ANK1_uc003xol.2_Silent_p.F1631F|ANK1_uc003xom.2_Silent_p.F1834F|ANK1_uc011lcl.1_5'Flank|ANK1_uc003xod.2_5'Flank|ANK1_uc003xoc.2_5'Flank|ANK1_uc003xof.2_5'Flank	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1793	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CCACTTGGGTGAAGGTGTTCT	0.652													33	49					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41525904	41525904	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41525904C>T	uc003xok.2	-	39	5359	c.5275G>A	c.(5275-5277)GAG>AAG	p.E1759K	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.E913K|ANK1_uc003xoi.2_Missense_Mutation_p.E1759K|ANK1_uc003xoj.2_Missense_Mutation_p.E1759K|ANK1_uc003xol.2_Missense_Mutation_p.E1597K|ANK1_uc003xom.2_Missense_Mutation_p.E1800K	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1759	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CACGTGTGCTCACTTACAGAC	0.592													25	57					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41542137	41542137	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41542137G>A	uc003xok.2	-	37	4546	c.4462C>T	c.(4462-4464)CGA>TGA	p.R1488*	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Nonsense_Mutation_p.R804*|ANK1_uc003xoi.2_Nonsense_Mutation_p.R1488*|ANK1_uc003xoj.2_Nonsense_Mutation_p.R1488*|ANK1_uc003xol.2_Nonsense_Mutation_p.R1488*|ANK1_uc003xom.2_Nonsense_Mutation_p.R1529*	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1488	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CGGCTCTGTCGGCCGGAACCC	0.592													14	40					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41545673	41545673	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41545673C>T	uc003xok.2	-	35	4342	c.4258_splice	c.e35+1	p.E1420_splice	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Splice_Site_p.E736_splice|ANK1_uc003xoi.2_Splice_Site_p.E1420_splice|ANK1_uc003xoj.2_Splice_Site_p.E1420_splice|ANK1_uc003xol.2_Splice_Site_p.E1420_splice|ANK1_uc003xom.2_Splice_Site_p.E1461_splice	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1						axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TCCCCACTCACCTGCCCAGCT	0.498													54	183					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41550202	41550202	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41550202C>T	uc003xok.2	-	31	3906	c.3822G>A	c.(3820-3822)GAG>GAA	p.E1274E	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.E590E|ANK1_uc003xoi.2_Silent_p.E1274E|ANK1_uc003xoj.2_Silent_p.E1274E|ANK1_uc003xol.2_Silent_p.E1274E|ANK1_uc003xom.2_Silent_p.E1315E	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1274					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CCACGAAGTTCTCATGCTGCT	0.577													114	326					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41554252	41554252	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41554252T>G	uc003xok.2	-	25	2761	c.2677A>C	c.(2677-2679)AGC>CGC	p.S893R	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.S209R|ANK1_uc003xoi.2_Missense_Mutation_p.S893R|ANK1_uc003xoj.2_Missense_Mutation_p.S893R|ANK1_uc003xol.2_Missense_Mutation_p.S893R|ANK1_uc003xom.2_Missense_Mutation_p.S934R	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	893					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GTGGCCGGGCTGCTGGGGATG	0.647													15	27					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41559078	41559078	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41559078C>T	uc003xok.2	-	22	2535	c.2451G>A	c.(2449-2451)TCG>TCA	p.S817S	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.S125S|ANK1_uc003xoi.2_Silent_p.S817S|ANK1_uc003xoj.2_Silent_p.S817S|ANK1_uc003xol.2_Silent_p.S817S|ANK1_uc003xom.2_Silent_p.S850S	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	817	89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CTTCATCTTCCGAGACATCCA	0.517											OREG0018740	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	86					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41559131	41559131	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41559131C>T	uc003xok.2	-	22	2482	c.2398G>A	c.(2398-2400)GAT>AAT	p.D800N	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.D108N|ANK1_uc003xoi.2_Missense_Mutation_p.D800N|ANK1_uc003xoj.2_Missense_Mutation_p.D800N|ANK1_uc003xol.2_Missense_Mutation_p.D800N|ANK1_uc003xom.2_Missense_Mutation_p.D833N	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	800	89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CGATGCTTATCACTGACTAAC	0.483											OREG0018740	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	63					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41581076	41581076	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41581076C>T	uc003xok.2	-	8	871	c.787G>A	c.(787-789)GCC>ACC	p.A263T	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.A263T|ANK1_uc003xoj.2_Missense_Mutation_p.A263T|ANK1_uc003xol.2_Missense_Mutation_p.A263T|ANK1_uc003xom.2_Missense_Mutation_p.A296T	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	263	ANK 7.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TCTATCTGGGCTCCCCGATCC	0.652													22	100					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41582036	41582036	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41582036C>T	uc003xok.2	-	7	733	c.649G>A	c.(649-651)GAG>AAG	p.E217K	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.E217K|ANK1_uc003xoj.2_Missense_Mutation_p.E217K|ANK1_uc003xol.2_Missense_Mutation_p.E217K|ANK1_uc003xom.2_Missense_Mutation_p.E250K	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	217	ANK 6.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TTGAGGTTCTCGTAGTGAGCC	0.567													3	5					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41582040	41582040	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41582040G>A	uc003xok.2	-	7	729	c.645C>T	c.(643-645)CAC>CAT	p.H215H	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Silent_p.H215H|ANK1_uc003xoj.2_Silent_p.H215H|ANK1_uc003xol.2_Silent_p.H215H|ANK1_uc003xom.2_Silent_p.H248H	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	215	ANK 6.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GGTTCTCGTAGTGAGCCGCAA	0.562													3	5					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41583305	41583305	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41583305C>T	uc003xok.2	-	6	670	c.586G>A	c.(586-588)GAC>AAC	p.D196N	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.D196N|ANK1_uc003xoj.2_Missense_Mutation_p.D196N|ANK1_uc003xol.2_Missense_Mutation_p.D196N|ANK1_uc003xom.2_Missense_Mutation_p.D229N	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	196	ANK 5.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GGGTTGGGGTCGTTCTGCAGC	0.716													7	13					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41585482	41585482	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41585482C>T	uc003xok.2	-	4	355	c.271G>A	c.(271-273)GAT>AAT	p.D91N	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.D91N|ANK1_uc003xoj.2_Missense_Mutation_p.D91N|ANK1_uc003xol.2_Missense_Mutation_p.D91N|ANK1_uc003xom.2_Missense_Mutation_p.D124N	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	91	89 kDa domain.|ANK 2.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			ACCACCTCATCCTGCCCGGCT	0.602													13	65					0	0	1	0	0
MYST3	7994	broad.mit.edu	37	8	41792152	41792152	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41792152G>A	uc010lxb.2	-	18	4130	c.3586C>T	c.(3586-3588)CCT>TCT	p.P1196S	MYST3_uc010lxc.2_Missense_Mutation_p.P1196S|MYST3_uc003xon.3_Missense_Mutation_p.P1196S	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1196					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			CCAGCTTTAGGAATGGAAACG	0.408													25	140					0	0	1	0	0
MYST3	7994	broad.mit.edu	37	8	41839448	41839448	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:41839448G>A	uc010lxb.2	-	5	1278	c.734C>T	c.(733-735)TCC>TTC	p.S245F	MYST3_uc010lxc.2_Missense_Mutation_p.S245F|MYST3_uc003xon.3_Missense_Mutation_p.S245F|MYST3_uc010lxd.2_Missense_Mutation_p.S245F	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	245	PHD-type 1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			TAGTTCAGGGGAAAACTTTAA	0.413													10	24					0	0	1	0	0
AP3M2	10947	broad.mit.edu	37	8	42015560	42015560	+	Silent	SNP	C	T	T	rs113481990		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:42015560C>T	uc003xop.2	+	4	666	c.375C>T	c.(373-375)ACC>ACT	p.T125T	AP3M2_uc003xoo.2_Silent_p.T125T|AP3M2_uc010lxe.2_RNA|AP3M2_uc003xoq.1_Silent_p.T10T|AP3M2_uc003xor.1_Silent_p.T125T	NM_001134296	NP_001127768	P53677	AP3M2_HUMAN	adaptor-related protein complex 3, mu 2 subunit	125					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus					0	all_cancers(6;8.14e-25)|all_epithelial(6;2.41e-27)|all_lung(13;5.09e-13)|Lung NSC(13;8.38e-12)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|Colorectal(10;0.00165)|OV - Ovarian serous cystadenocarcinoma(14;0.00346)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)			CATTGGCTACCGAGTCGAACA	0.428													15	114					0	0	1	0	0
PLAT	5327	broad.mit.edu	37	8	42050647	42050647	+	Silent	SNP	G	A	A	rs141964626		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:42050647G>A	uc003xos.2	-	2	266	c.57C>T	c.(55-57)TTC>TTT	p.F19F	PLAT_uc010lxf.1_Silent_p.F19F|PLAT_uc010lxg.1_Silent_p.F19F|PLAT_uc003xot.2_Silent_p.F19F|PLAT_uc011lcm.1_Silent_p.F19F|PLAT_uc011lcn.1_Silent_p.F19F	NM_000930	NP_000921	P00750	TPA_HUMAN	plasminogen activator, tissue isoform 1	19					blood coagulation|fibrinolysis|negative regulation of proteolysis|protein modification process|proteolysis	cell surface|cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			breast(1)|skin(1)	2	all_cancers(6;3.84e-26)|all_epithelial(6;9.61e-28)|all_lung(13;7.2e-13)|Lung NSC(13;1.18e-11)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000378)|Lung NSC(58;0.00145)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00135)|Colorectal(10;0.00165)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)		Alteplase(DB00009)|Aminocaproic Acid(DB00513)|Anistreplase(DB00029)|Iloprost(DB01088)|Reteplase(DB00015)|Tenecteplase(DB00031)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TGGGCGAAACGAAGACTGCTC	0.567													25	57					0	0	1	0	0
DKK4	27121	broad.mit.edu	37	8	42233236	42233236	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:42233236C>T	uc003xpb.2	-	2	335	c.224G>A	c.(223-225)CGA>CAA	p.R75Q		NM_014420	NP_055235	Q9UBT3	DKK4_HUMAN	dickkopf homolog 4 precursor	75	DKK-type Cys-1.				multicellular organismal development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region				ovary(1)	1	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;2.58e-12)|Lung NSC(13;4.24e-11)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.1)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;3.48e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00523)|Lung(22;0.00597)|LUSC - Lung squamous cell carcinoma(45;0.024)			CATGGCATCTCGCTGGCACCT	0.552													11	62					0	0	1	0	0
SLC20A2	6575	broad.mit.edu	37	8	42302216	42302216	+	Silent	SNP	G	A	A	rs116687117	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:42302216G>A	uc010lxl.2	-	6	1372	c.678C>T	c.(676-678)TTC>TTT	p.F226F	SLC20A2_uc010lxm.2_Silent_p.F226F|SLC20A2_uc003xpe.2_Silent_p.F226F|SLC20A2_uc011lcu.1_Silent_p.F28F	NM_006749	NP_006740	Q08357	S20A2_HUMAN	solute carrier family 20, member 2	226	Helical; (Potential).				interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			ovary(2)	2	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CAAAAAAAGCGAACAGGAGGG	0.493													31	55					0	0	1	0	0
SLC20A2	6575	broad.mit.edu	37	8	42320605	42320605	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:42320605G>A	uc010lxl.2	-	4	1128	c.434C>T	c.(433-435)GCT>GTT	p.A145V	SLC20A2_uc010lxm.2_Missense_Mutation_p.A145V|SLC20A2_uc003xpe.2_Missense_Mutation_p.A145V	NM_006749	NP_006740	Q08357	S20A2_HUMAN	solute carrier family 20, member 2	145	Helical; (Potential).				interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			ovary(2)	2	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			AAACCAAGAAGCAACTGAATA	0.308													4	42					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42552660	42552660	+	Translation_Start_Site	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:42552660A>T	uc003xpi.1	+	1	99	c.-29A>T	c.(-31--27)GAAGA>GATGA			NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta						synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TTAAAAAGGAAGAAACTGTCT	0.443													26	93					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587021	42587021	+	Missense_Mutation	SNP	G	A	A	rs78866303	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:42587021G>A	uc003xpi.1	+	5	699	c.571G>A	c.(571-573)GAC>AAC	p.D191N		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	191	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TGAAAATGTCGACAGAAAAGA	0.463													16	70					0	0	1	0	0
CHRNA6	8973	broad.mit.edu	37	8	42611578	42611578	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:42611578G>A	uc003xpj.2	-	5	810	c.764C>T	c.(763-765)TCA>TTA	p.S255L	CHRNA6_uc011lcw.1_Missense_Mutation_p.S240L	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	255	Helical; (Potential).					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GGTTAGAAATGAAATAAAGAG	0.378													7	63					0	0	1	0	0
HGSNAT	138050	broad.mit.edu	37	8	43013755	43013755	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:43013755C>T	uc003xpx.3	+	3	320	c.272C>T	c.(271-273)CCA>CTA	p.P91L		NM_152419	NP_689632	Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	119	Lumenal, vesicle (Potential).				lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity				0	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			CCTCAGAGTCCAAAAGCAGGG	0.488													33	85					0	0	1	0	0
HGSNAT	138050	broad.mit.edu	37	8	43054643	43054643	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:43054643C>T	uc003xpx.3	+	18	1887	c.1839C>T	c.(1837-1839)ATC>ATT	p.I613I		NM_152419	NP_689632	Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	641	Helical; (Potential).				lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity				0	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			CTCAGAACATCGTCGCCACTG	0.498													8	22					0	0	1	0	0
POTEA	340441	broad.mit.edu	37	8	43157211	43157211	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:43157211G>A	uc003xpz.1	+	5	834	c.791G>A	c.(790-792)GGA>GAA	p.G264E	POTEA_uc003xqa.1_Intron	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	264										ovary(1)	1						GATGTATTTGGACAAACTGCT	0.308													6	75					0	0	1	0	0
POTEA	340441	broad.mit.edu	37	8	43171060	43171060	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:43171060G>A	uc003xpz.1	+	7	974	c.931G>A	c.(931-933)GAA>AAA	p.E311K	POTEA_uc003xqa.1_Missense_Mutation_p.E265K	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	311										ovary(1)	1						GACATCAGAGGAAGAGCCACA	0.284													17	53					0	0	1	0	0
POTEA	340441	broad.mit.edu	37	8	43197462	43197462	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:43197462G>A	uc003xpz.1	+	11	1394	c.1351G>A	c.(1351-1353)GAT>AAT	p.D451N	POTEA_uc003xqa.1_Missense_Mutation_p.D405N	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	451										ovary(1)	1						ACTCAAAATGGATTTTAACGG	0.373													38	99					0	0	1	0	0
KIAA0146	23514	broad.mit.edu	37	8	48309146	48309146	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:48309146C>T	uc003xqd.2	+	6	745	c.736C>T	c.(736-738)CCC>TCC	p.P246S	KIAA0146_uc011lcz.1_Intron|KIAA0146_uc011lda.1_Intron|KIAA0146_uc011ldb.1_Missense_Mutation_p.P246S|KIAA0146_uc010lxs.2_5'UTR|KIAA0146_uc011ldc.1_Missense_Mutation_p.P176S|KIAA0146_uc011ldd.1_Missense_Mutation_p.P186S|KIAA0146_uc003xqe.2_Intron|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Intron	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	246											0		Lung NSC(58;0.175)				AGCTAAGTTTCCCAGGACTCC	0.353													80	181					0	0	1	0	0
KIAA0146	23514	broad.mit.edu	37	8	48353039	48353039	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:48353039C>T	uc003xqd.2	+	8	1041	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F	KIAA0146_uc011lcz.1_RNA|KIAA0146_uc011lda.1_Silent_p.F33F|KIAA0146_uc011ldb.1_Silent_p.F344F|KIAA0146_uc010lxs.2_5'UTR|KIAA0146_uc011ldc.1_Silent_p.F274F|KIAA0146_uc011ldd.1_Silent_p.F284F|KIAA0146_uc003xqe.2_5'UTR|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Silent_p.F33F|KIAA0146_uc010lxt.2_Silent_p.F33F	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	344											0		Lung NSC(58;0.175)				AAGTTCTCTTCACCAAGGAGA	0.587													23	56					0	0	1	0	0
KIAA0146	23514	broad.mit.edu	37	8	48614394	48614394	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:48614394C>T	uc003xqd.2	+	13	1894	c.1885C>T	c.(1885-1887)CCA>TCA	p.P629S	KIAA0146_uc011ldb.1_Missense_Mutation_p.P629S|KIAA0146_uc010lxs.2_Missense_Mutation_p.P104S|KIAA0146_uc011ldc.1_Missense_Mutation_p.P559S|KIAA0146_uc011ldd.1_Missense_Mutation_p.P569S|KIAA0146_uc003xqe.2_Missense_Mutation_p.P104S|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Missense_Mutation_p.P318S|KIAA0146_uc010lxt.2_Missense_Mutation_p.P318S|KIAA0146_uc011ldf.1_Missense_Mutation_p.P134S|KIAA0146_uc011ldg.1_Missense_Mutation_p.P119S|KIAA0146_uc010lxv.1_Missense_Mutation_p.P123S	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	629											0		Lung NSC(58;0.175)				TTACCAGCCTCCAGTTACCCG	0.448													95	248					0	0	1	0	0
KIAA0146	23514	broad.mit.edu	37	8	48625280	48625280	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:48625280C>T	uc003xqd.2	+	15	2043	c.2034C>T	c.(2032-2034)GTC>GTT	p.V678V	KIAA0146_uc011ldb.1_Silent_p.V678V|KIAA0146_uc010lxs.2_Silent_p.V153V|KIAA0146_uc011ldc.1_Silent_p.V608V|KIAA0146_uc011ldd.1_Silent_p.V618V|KIAA0146_uc003xqe.2_Silent_p.V153V|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Silent_p.V367V|KIAA0146_uc010lxt.2_Silent_p.V367V|KIAA0146_uc011ldf.1_Silent_p.V183V|KIAA0146_uc011ldg.1_Silent_p.V168V|KIAA0146_uc003xqg.1_5'Flank	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	678											0		Lung NSC(58;0.175)				TGACCGATGTCACTCTGCAAA	0.498													11	111					0	0	1	0	0
PRKDC	5591	broad.mit.edu	37	8	48772186	48772186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:48772186G>A	uc003xqi.2	-	47	6250	c.6193C>T	c.(6193-6195)CGT>TGT	p.R2065C	PRKDC_uc003xqj.2_Missense_Mutation_p.R2065C|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2065					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CTCCGAAAACGACCAGTGGCA	0.458								NHEJ					54	166					0	0	1	0	0
PRKDC	5591	broad.mit.edu	37	8	48849077	48849077	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:48849077G>A	uc003xqi.2	-	12	1171	c.1114C>T	c.(1114-1116)CCG>TCG	p.P372S	PRKDC_uc003xqj.2_Missense_Mutation_p.P372S|PRKDC_uc011ldh.1_Missense_Mutation_p.P372S	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	372					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				ACCTTGCACGGCTTTAGAAAA	0.378								NHEJ					18	38					0	0	1	0	0
EFCAB1	79645	broad.mit.edu	37	8	49643999	49643999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:49643999C>T	uc003xqo.2	-	2	282	c.122G>A	c.(121-123)AGG>AAG	p.R41K	EFCAB1_uc003xqn.3_Intron|EFCAB1_uc011ldj.1_Intron|EFCAB1_uc010lxx.2_Intron|EFCAB1_uc011ldk.1_Intron	NM_024593	NP_078869	Q9HAE3	EFCB1_HUMAN	EF-hand calcium binding domain 1 isoform a	41							calcium ion binding				0		all_epithelial(80;0.0134)|Lung NSC(129;0.0207)|all_lung(136;0.0464)				CAGACCTTGCCTCTCTACTCC	0.358													13	48					0	0	1	0	0
SNTG1	54212	broad.mit.edu	37	8	51362271	51362271	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:51362271C>T	uc010lxy.1	+	7	634	c.263C>T	c.(262-264)TCC>TTC	p.S88F	SNTG1_uc003xqs.1_Missense_Mutation_p.S88F|SNTG1_uc010lxz.1_Missense_Mutation_p.S88F|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	88	PDZ.				cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				TCAAAAATCTCCAAGGAACAA	0.313													11	32					0	0	1	0	0
SNTG1	54212	broad.mit.edu	37	8	51449363	51449363	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:51449363G>A	uc010lxy.1	+	12	1046	c.675G>A	c.(673-675)TTG>TTA	p.L225L	SNTG1_uc003xqs.1_Silent_p.L225L|SNTG1_uc010lxz.1_Silent_p.L225L|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	225					cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				GCACAGATTTGAGTCGGTGAG	0.453													19	166					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52232540	52232540	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:52232540G>A	uc003xqu.3	-	23	4404	c.4303C>T	c.(4303-4305)CCC>TCC	p.P1435S	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1435	VWFC.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CTGGGACAGGGAGCCGGGGGA	0.483													7	15					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52284496	52284496	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:52284496C>T	uc003xqu.3	-	19	3939	c.3838G>A	c.(3838-3840)GAT>AAT	p.D1280N	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1280					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TTCAGGTAATCCTGTGGGTAT	0.522													7	23					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52321402	52321402	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:52321402G>A	uc003xqu.3	-	17	2883	c.2782C>T	c.(2782-2784)CCC>TCC	p.P928S	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	928					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TTTCCGGAGGGAGGCCAAGGA	0.647													9	15					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52321663	52321663	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:52321663G>A	uc003xqu.3	-	17	2622	c.2521C>T	c.(2521-2523)CCT>TCT	p.P841S	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	841					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GGGAAACAAGGAGGGTCGTTG	0.692													9	27					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52321967	52321967	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:52321967C>T	uc003xqu.3	-	17	2318	c.2217G>A	c.(2215-2217)CAG>CAA	p.Q739Q	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	739					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CCCACGTGGGCTGCTGCAGGT	0.697													5	28					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52322009	52322009	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:52322009C>T	uc003xqu.3	-	17	2276	c.2175G>A	c.(2173-2175)GCG>GCA	p.A725A	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	725					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CGCGGTACTTCGCATGGAAAC	0.657													7	40					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52323898	52323898	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:52323898C>T	uc003xqu.3	-	16	2075	c.1974G>A	c.(1972-1974)ATG>ATA	p.M658I	PXDNL_uc003xqt.3_5'Flank	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	658					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CTGCTCTTGCCATTTCCACAA	0.498													10	14					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53062516	53062516	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:53062516C>T	uc003xqz.2	-	11	1984	c.1828G>A	c.(1828-1830)GAA>AAA	p.E610K	ST18_uc011ldq.1_Missense_Mutation_p.E257K|ST18_uc011ldr.1_Missense_Mutation_p.E575K|ST18_uc011lds.1_Missense_Mutation_p.E515K|ST18_uc003xra.2_Missense_Mutation_p.E610K|ST18_uc003xrb.2_Missense_Mutation_p.E610K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	610						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GTGCCATTTTCATCCACTTCT	0.418													36	86					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53084376	53084376	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:53084376C>T	uc003xqz.2	-	5	1201	c.1045G>A	c.(1045-1047)GGA>AGA	p.G349R	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.G314R|ST18_uc011lds.1_Missense_Mutation_p.G254R|ST18_uc003xra.2_Missense_Mutation_p.G349R|ST18_uc003xrb.2_Missense_Mutation_p.G349R	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	349						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				ATTTGTCTTCCACCCATGTCG	0.378													43	125					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53084728	53084728	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:53084728C>T	uc003xqz.2	-	5	849	c.693G>A	c.(691-693)TTG>TTA	p.L231L	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Silent_p.L196L|ST18_uc011lds.1_Silent_p.L136L|ST18_uc003xra.2_Silent_p.L231L|ST18_uc003xrb.2_Silent_p.L231L	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	231						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CAGGAACTTCCAATAGGTCTT	0.418													18	69					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53084910	53084910	+	Missense_Mutation	SNP	G	A	A	rs140839383		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:53084910G>A	uc003xqz.2	-	5	667	c.511C>T	c.(511-513)CAT>TAT	p.H171Y	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.H136Y|ST18_uc011lds.1_Missense_Mutation_p.H76Y|ST18_uc003xra.2_Missense_Mutation_p.H171Y|ST18_uc003xrb.2_Missense_Mutation_p.H171Y	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	171						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TCATCAGAATGAATCAGAAAG	0.403													31	55					0	0	1	0	0
RB1CC1	9821	broad.mit.edu	37	8	53558288	53558288	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:53558288G>A	uc003xre.3	-	16	4519	c.3961C>T	c.(3961-3963)CGA>TGA	p.R1321*	RB1CC1_uc003xrf.3_Nonsense_Mutation_p.R1321*	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	1321	Potential.				autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				AAAGATGTTCGAACATTTTGC	0.313													18	44					0	0	1	0	0
RB1CC1	9821	broad.mit.edu	37	8	53586454	53586454	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:53586454G>A	uc003xre.3	-	7	1511	c.953C>T	c.(952-954)CCT>CTT	p.P318L	RB1CC1_uc003xrf.3_Missense_Mutation_p.P318L	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	318					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				CACATCATTAGGTCTATCTTG	0.338													14	55					0	0	1	0	0
NPBWR1	2831	broad.mit.edu	37	8	53852583	53852583	+	Missense_Mutation	SNP	C	T	T	rs145057890		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:53852583C>T	uc011ldu.1	+	1	116	c.116C>T	c.(115-117)GCT>GTT	p.A39V		NM_005285	NP_005276	P48145	NPBW1_HUMAN	G protein-coupled receptor 7	39	Helical; Name=1; (Potential).				synaptic transmission	plasma membrane	opioid receptor activity|protein binding			ovary(2)|breast(1)	3		Lung NSC(129;0.0222)|all_epithelial(80;0.0301)|all_lung(136;0.0431)				CTGGCGGTGGCTGTACCAGTT	0.716													11	22					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54142212	54142212	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:54142212C>T	uc003xrh.1	-	3	1163	c.788G>A	c.(787-789)CGA>CAA	p.R263Q	OPRK1_uc003xri.1_Missense_Mutation_p.R263Q|OPRK1_uc010lyc.1_Missense_Mutation_p.R174Q	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	263	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	ATCTTTCTCTCGGGAGCCAGA	0.547													25	51					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54142292	54142292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:54142292C>T	uc003xrh.1	-	3	1083	c.708G>A	c.(706-708)GTG>GTA	p.V236V	OPRK1_uc003xri.1_Silent_p.V236V|OPRK1_uc010lyc.1_Silent_p.V147V	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	236	Helical; Name=5; (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	GGACAGGGATCACGAAGGCAA	0.532													18	51					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54147437	54147437	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:54147437C>T	uc003xrh.1	-	2	867	c.492G>A	c.(490-492)GTG>GTA	p.V164V	OPRK1_uc003xri.1_Silent_p.V164V|OPRK1_uc010lyc.1_Silent_p.V75V	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	164	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	CCAAAGCCTTCACGGGGTGGC	0.488													14	68					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54147547	54147547	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:54147547C>T	uc003xrh.1	-	2	757	c.382G>A	c.(382-384)GAT>AAT	p.D128N	OPRK1_uc003xri.1_Missense_Mutation_p.D128N|OPRK1_uc010lyc.1_Missense_Mutation_p.D39N	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	128	Extracellular (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	CACAGCACATCCCCAAAAGGC	0.438													42	77					0	0	1	0	0
SOX17	64321	broad.mit.edu	37	8	55370910	55370910	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55370910C>T	uc003xsb.3	+	1	416	c.212C>T	c.(211-213)CCG>CTG	p.P71L		NM_022454	NP_071899	Q9H6I2	SOX17_HUMAN	SRY-box 17	71	HMG box.				angiogenesis|cardiac cell fate determination|endocardial cell differentiation|endocardium formation|endoderm formation|heart formation|heart looping|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|outflow tract morphogenesis|positive regulation of transcription, DNA-dependent|protein destabilization|protein stabilization|regulation of embryonic development|renal system development|vasculogenesis|Wnt receptor signaling pathway	transcription factor complex	beta-catenin binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			lung(1)	1		Lung NSC(129;0.109)|all_epithelial(80;0.176)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;1.9e-07)|Epithelial(17;1.7e-05)|all cancers(17;0.000159)			ATCCGGCGGCCGATGAACGCT	0.677													16	27					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55534823	55534823	+	Silent	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55534823A>T	uc003xsd.1	+	3	910	c.762A>T	c.(760-762)GGA>GGT	p.G254G	RP1_uc011ldy.1_Silent_p.G254G	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	254					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACCCCAAGGGAAATGCAAAGT	0.413													23	63					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537328	55537328	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55537328C>T	uc003xsd.1	+	4	1034	c.886C>T	c.(886-888)CCT>TCT	p.P296S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	296					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTCTTTTGTTCCTGAAAAGTA	0.318													17	55					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537447	55537447	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55537447G>A	uc003xsd.1	+	4	1153	c.1005G>A	c.(1003-1005)ATG>ATA	p.M335I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	335					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CAGTTGAGATGAAAGTTCGAT	0.313													19	35					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537629	55537629	+	Missense_Mutation	SNP	G	A	A	rs141279458	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55537629G>A	uc003xsd.1	+	4	1335	c.1187G>A	c.(1186-1188)CGA>CAA	p.R396Q	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	396					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CCTATGGAGCGAAGCAGTAAT	0.433													15	45					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537744	55537744	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55537744C>T	uc003xsd.1	+	4	1450	c.1302C>T	c.(1300-1302)ATC>ATT	p.I434I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	434					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACACAGATATCATCCAGGGAA	0.448													32	78					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537901	55537901	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55537901G>A	uc003xsd.1	+	4	1607	c.1459G>A	c.(1459-1461)GAA>AAA	p.E487K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	487					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTCATATAGTGAAGAAAGGGA	0.363													28	67					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538257	55538257	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55538257C>T	uc003xsd.1	+	4	1963	c.1815C>T	c.(1813-1815)TTC>TTT	p.F605F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	605					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATGATAGGTTCAGTCCTATTT	0.378													33	109					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538718	55538718	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55538718G>A	uc003xsd.1	+	4	2424	c.2276G>A	c.(2275-2277)AGA>AAA	p.R759K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	759					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AATTTCCATAGAAATAAATTA	0.299													9	29					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538757	55538757	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55538757G>A	uc003xsd.1	+	4	2463	c.2315G>A	c.(2314-2316)GGA>GAA	p.G772E	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	772					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAGGTTCAAGGACTTTTAACC	0.294													6	46					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538849	55538849	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55538849C>T	uc003xsd.1	+	4	2555	c.2407C>T	c.(2407-2409)CCT>TCT	p.P803S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	803					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TAAAGTGTTTCCTCACAATGA	0.299													20	43					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55539234	55539234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55539234C>T	uc003xsd.1	+	4	2940	c.2792C>T	c.(2791-2793)CCT>CTT	p.P931L	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	931					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACTTTAAAGCCTATAAAATCA	0.323													15	45					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55539443	55539443	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55539443G>A	uc003xsd.1	+	4	3149	c.3001G>A	c.(3001-3003)GAA>AAA	p.E1001K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1001					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGACACTGGTGAAGAAGATCT	0.383													61	189					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55539788	55539788	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55539788C>T	uc003xsd.1	+	4	3494	c.3346C>T	c.(3346-3348)CCC>TCC	p.P1116S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1116					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGCAGGTGTTCCCTTTCATTC	0.423													19	58					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55540430	55540430	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55540430G>A	uc003xsd.1	+	4	4136	c.3988G>A	c.(3988-3990)GAT>AAT	p.D1330N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1330					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTGCCCAATTGATGAGACCTA	0.393													34	132					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55540727	55540727	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55540727C>T	uc003xsd.1	+	4	4433	c.4285C>T	c.(4285-4287)CAG>TAG	p.Q1429*	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1429					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAGGAAGTTTCAGGATGAAAA	0.368													24	59					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55540842	55540842	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55540842C>T	uc003xsd.1	+	4	4548	c.4400C>T	c.(4399-4401)TCT>TTT	p.S1467F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1467					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GAATTGGAATCTTTTGAAGAA	0.378													14	70					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55541169	55541169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55541169C>T	uc003xsd.1	+	4	4875	c.4727C>T	c.(4726-4728)TCT>TTT	p.S1576F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1576					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCAGAGTCCTCTCCTGATTTA	0.383													17	69					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55541199	55541199	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55541199C>T	uc003xsd.1	+	4	4905	c.4757C>T	c.(4756-4758)CCA>CTA	p.P1586L	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1586					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATCAAAAGTCCAGTGACTTCT	0.403													42	55					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55542092	55542092	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55542092G>A	uc003xsd.1	+	4	5798	c.5650G>A	c.(5650-5652)GAT>AAT	p.D1884N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1884					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGTCTCTGATGATGCTATTAA	0.408													30	80					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55542276	55542276	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55542276A>G	uc003xsd.1	+	4	5982	c.5834A>G	c.(5833-5835)AAT>AGT	p.N1945S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1945					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GATATTGAAAATTTCTTGGGT	0.353													23	93					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55542280	55542280	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55542280C>T	uc003xsd.1	+	4	5986	c.5838C>T	c.(5836-5838)TTC>TTT	p.F1946F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1946					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTGAAAATTTCTTGGGTTTTT	0.343													22	98					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55542468	55542468	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:55542468G>A	uc003xsd.1	+	4	6174	c.6026G>A	c.(6025-6027)AGA>AAA	p.R2009K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	2009					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAACAAAAAAGAATTAACTTC	0.294													43	81					0	0	1	0	0
XKR4	114786	broad.mit.edu	37	8	56270365	56270365	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:56270365C>T	uc003xsf.2	+	2	966	c.934C>T	c.(934-936)CTG>TTG	p.L312L		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	312	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			AGCCACCTTTCTGGAAAGTGC	0.478													18	47					0	0	1	0	0
XKR4	114786	broad.mit.edu	37	8	56435862	56435862	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:56435862C>T	uc003xsf.2	+	3	1061	c.1029C>T	c.(1027-1029)CTC>CTT	p.L343L		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	343	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CAGCTTCCCTCGTGTCCCTGG	0.572													12	16					0	0	1	0	0
XKR4	114786	broad.mit.edu	37	8	56436483	56436483	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:56436483C>T	uc003xsf.2	+	3	1682	c.1650C>T	c.(1648-1650)TCC>TCT	p.S550S		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	550						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			GGTCCATCTCCAACAACCGCA	0.592													12	77					0	0	1	0	0
XKR4	114786	broad.mit.edu	37	8	56436710	56436710	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:56436710C>T	uc003xsf.2	+	3	1909	c.1877C>T	c.(1876-1878)TCC>TTC	p.S626F		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	626						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TTTGAATGTTCCCCATCTCCT	0.453													24	55					0	0	1	0	0
LYN	4067	broad.mit.edu	37	8	56910937	56910937	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:56910937G>A	uc003xsk.3	+	11	1365	c.1083G>A	c.(1081-1083)AAG>AAA	p.K361K	LYN_uc003xsl.3_Silent_p.K340K	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	361	Protein kinase.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			TCGAGCGGAAGAACTACATTC	0.448													16	48					0	0	1	0	0
LYN	4067	broad.mit.edu	37	8	56922570	56922570	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:56922570G>A	uc003xsk.3	+	13	1722	c.1440G>A	c.(1438-1440)TGG>TGA	p.W480*	LYN_uc003xsl.3_Nonsense_Mutation_p.W459*	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	480	Protein kinase.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			AAATGTGCTGGAAAGAAAAGG	0.512													11	86					0	0	1	0	0
MOS	4342	broad.mit.edu	37	8	57025542	57025542	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57025542G>A	uc011leb.1	-	1	1000	c.1000C>T	c.(1000-1002)CTT>TTT	p.L334F		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	334	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			TCCACCAAAAGCAGCCGCGCG	0.567													8	32					0	0	1	0	0
MOS	4342	broad.mit.edu	37	8	57026446	57026446	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57026446C>T	uc011leb.1	-	1	96	c.96G>A	c.(94-96)GCG>GCA	p.A32A		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	32							ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			GAAGCAGCTTCGCAGGTAGCT	0.701													13	22					0	0	1	0	0
MOS	4342	broad.mit.edu	37	8	57026495	57026495	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57026495G>A	uc011leb.1	-	1	47	c.47C>T	c.(46-48)TCC>TTC	p.S16F		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	16							ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			CACCGATGGGGAAAACTCGCT	0.692													11	31					0	0	1	0	0
PLAG1	5324	broad.mit.edu	37	8	57078909	57078909	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57078909G>A	uc003xsq.3	-	3	1847	c.1396C>T	c.(1396-1398)CCT>TCT	p.P466S	PLAG1_uc003xsr.3_Missense_Mutation_p.P466S|PLAG1_uc010lyi.2_Missense_Mutation_p.P466S|PLAG1_uc010lyj.2_Missense_Mutation_p.P384S	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	466	Activates transcription; Inhibition of nuclear import due to lack of NLS and KPNA2 interaction.|Massively activates transcription.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			GTGTTTGCAGGATCCTGAAGA	0.498			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								25	165					0	0	1	0	0
PLAG1	5324	broad.mit.edu	37	8	57079149	57079149	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57079149G>A	uc003xsq.3	-	3	1607	c.1156C>T	c.(1156-1158)CCT>TCT	p.P386S	PLAG1_uc003xsr.3_Missense_Mutation_p.P386S|PLAG1_uc010lyi.2_Missense_Mutation_p.P386S|PLAG1_uc010lyj.2_Missense_Mutation_p.P304S	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	386	Activates transcription; Inhibition of nuclear import due to lack of NLS and KPNA2 interaction.|Massively activates transcription.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			CCAATCTGAGGATCCAACCCT	0.483			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								36	110					0	0	1	0	0
PLAG1	5324	broad.mit.edu	37	8	57079198	57079198	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57079198A>G	uc003xsq.3	-	3	1558	c.1107T>C	c.(1105-1107)TCT>TCC	p.S369S	PLAG1_uc003xsr.3_Silent_p.S369S|PLAG1_uc010lyi.2_Silent_p.S369S|PLAG1_uc010lyj.2_Silent_p.S287S	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	369	Activates transcription; Inhibition of nuclear import due to lack of NLS and KPNA2 interaction.|Repression domain; contains 3 sumoylation motifs and massively decrease transcription activity.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			CTTGGGATGAAGAGGGCACGC	0.453			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								47	119					0	0	1	0	0
PLAG1	5324	broad.mit.edu	37	8	57079286	57079286	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57079286G>A	uc003xsq.3	-	3	1470	c.1019C>T	c.(1018-1020)TCA>TTA	p.S340L	PLAG1_uc003xsr.3_Missense_Mutation_p.S340L|PLAG1_uc010lyi.2_Missense_Mutation_p.S340L|PLAG1_uc010lyj.2_Missense_Mutation_p.S258L	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	340	Activates transcription; Inhibition of nuclear import due to lack of NLS and KPNA2 interaction.|Repression domain; contains 3 sumoylation motifs and massively decrease transcription activity.			S->A: No effect on transcription activation capacity.		nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			AATTGCATATGAGGTAGAACT	0.418			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								21	194					0	0	1	0	0
SDR16C5	195814	broad.mit.edu	37	8	57221519	57221519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57221519G>A	uc003xsy.1	-	4	1171	c.533C>T	c.(532-534)TCA>TTA	p.S178L	SDR16C5_uc010lyk.1_Missense_Mutation_p.S178L|SDR16C5_uc010lyl.1_Missense_Mutation_p.S134L	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	178					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TAATCCAGCTGAACTTGAAAT	0.333													28	51					0	0	1	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228600	57228600	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57228600C>T	uc003xsy.1	-	2	945	c.307G>A	c.(307-309)GAA>AAA	p.E103K	SDR16C5_uc010lyk.1_Missense_Mutation_p.E103K|SDR16C5_uc010lyl.1_Missense_Mutation_p.E103K	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	103					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TACACTCCTTCCTTTTGGCTG	0.448													35	113					0	0	1	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228679	57228679	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57228679C>T	uc003xsy.1	-	2	866	c.228G>A	c.(226-228)GGG>GGA	p.G76G	SDR16C5_uc010lyk.1_Silent_p.G76G|SDR16C5_uc010lyl.1_Silent_p.G76G	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	76					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TTTCCTCATTCCCCTCCTTAT	0.522													17	112					0	0	1	0	0
PENK	5179	broad.mit.edu	37	8	57354001	57354001	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57354001C>T	uc003xsz.2	-	2	715	c.634G>A	c.(634-636)GGC>AGC	p.G212S	PENK_uc003xta.3_Missense_Mutation_p.G212S	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	212					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CTCATGAAGCCCCCATATCGC	0.537													57	89					0	0	1	0	0
PENK	5179	broad.mit.edu	37	8	57354073	57354074	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57354073_57354074CC>TT	uc003xsz.2	-	2	642_643	c.561_562GG>AA	c.(559-564)GGGGGC>GGAAGC	p.G188S	PENK_uc003xta.3_Missense_Mutation_p.G188S	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	188					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CTCATGAAGCCCCCATATCTCT	0.52													53	130					0	0	1	0	0
PENK	5179	broad.mit.edu	37	8	57354135	57354135	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57354135C>T	uc003xsz.2	-	2	581	c.500G>A	c.(499-501)CGA>CAA	p.R167Q	PENK_uc003xta.3_Missense_Mutation_p.R167Q	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	167					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			GCTACGCTCTCGGTTGTCCCC	0.527													8	136					0	0	1	0	0
PENK	5179	broad.mit.edu	37	8	57354218	57354218	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57354218G>A	uc003xsz.2	-	2	498	c.417C>T	c.(415-417)TTC>TTT	p.F139F	PENK_uc003xta.3_Silent_p.F139F	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	139					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CCTTCTTCATGAAGCCCCCAT	0.532													21	105					0	0	1	0	0
PENK	5179	broad.mit.edu	37	8	57358377	57358377	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57358377G>A	uc003xsz.2	-	1	217	c.136C>T	c.(136-138)CTG>TTG	p.L46L	uc003xtb.1_RNA|PENK_uc003xta.3_Silent_p.L46L|PENK_uc010lym.2_Silent_p.L46L	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	46					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			ACACTCACCAGGAAGTTGATG	0.687													8	91					0	0	1	0	0
IMPAD1	54928	broad.mit.edu	37	8	57890620	57890620	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:57890620G>A	uc003xte.3	-	3	918	c.635C>T	c.(634-636)TCC>TTC	p.S212F		NM_017813	NP_060283	Q9NX62	IMPA3_HUMAN	inositol monophosphatase domain containing 1	212						Golgi apparatus|integral to membrane	inositol-1(or 4)-monophosphatase activity|metal ion binding			ovary(1)	1		all_cancers(86;0.175)|all_lung(136;0.0321)|Lung NSC(129;0.0417)|all_epithelial(80;0.0448)				TGTATATTCGGAAAATGGCTT	0.338													47	131					0	0	1	0	0
FAM110B	90362	broad.mit.edu	37	8	59059522	59059522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:59059522G>A	uc003xtj.1	+	5	1613	c.733G>A	c.(733-735)GAA>AAA	p.E245K		NM_147189	NP_671722	Q8TC76	F110B_HUMAN	hypothetical protein LOC90362	245						microtubule organizing center|mitochondrion|nucleus				large_intestine(1)	1		all_epithelial(80;0.025)|all_lung(136;0.0274)|Lung NSC(129;0.0355)				CGACCCTGTGGAACCAGCTTG	0.607													32	108					0	0	1	0	0
UBXN2B	137886	broad.mit.edu	37	8	59345768	59345768	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:59345768C>T	uc003xtl.2	+	4	511	c.389C>T	c.(388-390)TCT>TTT	p.S130F		NM_001077619	NP_001071087	Q14CS0	UBX2B_HUMAN	UBX domain protein 2B	130						cytosol|endoplasmic reticulum|Golgi apparatus|nucleus				ovary(2)	2						TGTAAGCGGTCTGAATATATC	0.308													81	206					0	0	1	0	0
CYP7A1	1581	broad.mit.edu	37	8	59409322	59409322	+	Missense_Mutation	SNP	C	T	T	rs150039957	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:59409322C>T	uc003xtm.3	-	3	812	c.749G>A	c.(748-750)AGG>AAG	p.R250K		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	250					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				GATGCTTTCCCTCTTTTGGAG	0.542									Neonatal_Giant_Cell_Hepatitis				31	224					0	0	1	0	0
CYP7A1	1581	broad.mit.edu	37	8	59409675	59409675	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:59409675G>A	uc003xtm.3	-	3	459	c.396C>T	c.(394-396)ACC>ACT	p.T132T		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	132					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				GGCCCTGCAGGGTTTTGATGA	0.458									Neonatal_Giant_Cell_Hepatitis				36	89					0	0	1	0	0
CYP7A1	1581	broad.mit.edu	37	8	59410955	59410955	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:59410955G>A	uc003xtm.3	-	2	217	c.154C>T	c.(154-156)CCT>TCT	p.P52S		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	52					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				AACTCAAGAGGATTGGCACCA	0.418									Neonatal_Giant_Cell_Hepatitis				57	148					0	0	1	0	0
TOX	9760	broad.mit.edu	37	8	59728228	59728228	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:59728228G>A	uc003xtw.1	-	7	1282	c.1061C>T	c.(1060-1062)TCG>TTG	p.S354L		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	354						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				CGACGGCTTCGAATTGATCAG	0.522													14	52					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61742998	61742998	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:61742998C>T	uc003xue.2	+	15	4117	c.3640C>T	c.(3640-3642)CAG>TAG	p.Q1214*		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1214			Q -> R (in CHARGES).		central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AACAAACATTCAGAAGAAATA	0.378													39	109					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61769308	61769308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:61769308C>T	uc003xue.2	+	34	7946	c.7469C>T	c.(7468-7470)TCG>TTG	p.S2490L		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2490					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GCAGGCCTTTCGCGCACACCC	0.478													33	165					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61777953	61777953	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:61777953C>T	uc003xue.2	+	38	8932	c.8455C>T	c.(8455-8457)CCT>TCT	p.P2819S		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2819					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GTTGAATAACCCTCTGTCAGC	0.547													4	18					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61778406	61778406	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:61778406C>T	uc003xue.2	+	38	9385	c.8908C>T	c.(8908-8910)CTC>TTC	p.L2970F		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2970					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AGAGTCCTCCCTCTTAGAAGA	0.488													8	16					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62212745	62212745	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:62212745G>A	uc003xuh.2	+	2	683	c.359G>A	c.(358-360)AGG>AAG	p.R120K	CLVS1_uc003xug.2_Missense_Mutation_p.R120K|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Missense_Mutation_p.R120K	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	120	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						GGCATTAAGAGGGCTCTGATC	0.502													23	42					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62212752	62212752	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:62212752G>A	uc003xuh.2	+	2	690	c.366G>A	c.(364-366)CTG>CTA	p.L122L	CLVS1_uc003xug.2_Silent_p.L122L|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Silent_p.L122L	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	122	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						AGAGGGCTCTGATCGATGGGT	0.488													15	52					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62212777	62212777	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:62212777G>A	uc003xuh.2	+	2	715	c.391G>A	c.(391-393)GAA>AAA	p.E131K	CLVS1_uc003xug.2_Missense_Mutation_p.E131K|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Missense_Mutation_p.E131K	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	131	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CGGGGTGCTGGAAAACCGAGA	0.463													19	36					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62212800	62212800	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:62212800G>A	uc003xuh.2	+	2	738	c.414G>A	c.(412-414)AGG>AGA	p.R138R	CLVS1_uc003xug.2_Silent_p.R138R|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Silent_p.R138R	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	138	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						ATTACGGCAGGAAGATTCTTT	0.448													4	49					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62289169	62289169	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:62289169C>T	uc003xuh.2	+	3	785	c.461C>T	c.(460-462)TCC>TTC	p.S154F	CLVS1_uc003xug.2_Missense_Mutation_p.P153S|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.S154F	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	154	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						TGCAGGAACTCCTTCACAGAC	0.493													16	95					0	0	1	0	0
NKAIN3	286183	broad.mit.edu	37	8	63659578	63659578	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:63659578C>T	uc010lyq.1	+	4	493	c.361C>T	c.(361-363)CCC>TCC	p.P121S		NM_173688	NP_775959	Q8N8D7	NKAI3_HUMAN	Na+/K+ transporting ATPase interacting 3	121						integral to membrane|plasma membrane					0	Breast(64;0.127)	Lung NSC(129;0.187)				AGTGCTGCCTCCCTCAGCCCA	0.517													13	23					0	0	1	0	0
YTHDF3	253943	broad.mit.edu	37	8	64099987	64099987	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:64099987T>C	uc003xuy.2	+	5	1734	c.1418T>C	c.(1417-1419)TTT>TCT	p.F473S	YTHDF3_uc010lys.2_Missense_Mutation_p.F417S|YTHDF3_uc003xuz.2_Missense_Mutation_p.F417S|YTHDF3_uc003xva.2_Missense_Mutation_p.F417S|YTHDF3_uc011len.1_Missense_Mutation_p.F417S	NM_152758	NP_689971	Q7Z739	YTHD3_HUMAN	YTH domain family, member 3	473	YTH.										0	Breast(64;0.0716)	all_cancers(86;0.169)|Lung NSC(129;0.0324)|all_lung(136;0.0593)|all_epithelial(80;0.146)	BRCA - Breast invasive adenocarcinoma(89;0.161)			AGTGGACATTTTTGTGGAGTG	0.443													15	38					0	0	1	0	0
MIR124-2	406908	broad.mit.edu	37	8	65291793	65291793	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:65291793G>A	hsa-mir-124-2|MI0000444	+			c.88G>A			uc003xvd.2_Intron|uc003xve.2_Intron|uc003xvf.2_RNA																	0						TGCCAAGAGCGGAGCCTACGG	0.478													11	23					0	0	1	0	0
BHLHE22	27319	broad.mit.edu	37	8	65493764	65493764	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:65493764C>T	uc003xvi.2	+	1	951	c.417C>T	c.(415-417)GCC>GCT	p.A139A	LOC401463_uc003xvh.2_Intron	NM_152414	NP_689627	Q8NFJ8	BHE22_HUMAN	basic helix-loop-helix domain containing, class	139	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GCTCGGTGGCCGAGAGCAGCG	0.751													4	3					0	0	1	0	0
BHLHE22	27319	broad.mit.edu	37	8	65494180	65494180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:65494180G>A	uc003xvi.2	+	1	1367	c.833G>A	c.(832-834)CGA>CAA	p.R278Q	LOC401463_uc003xvh.2_Intron	NM_152414	NP_689627	Q8NFJ8	BHE22_HUMAN	basic helix-loop-helix domain containing, class	278	Helix-loop-helix motif.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CCCTCGGTGCGAAAGCTCTCC	0.647													8	17					0	0	1	0	0
CYP7B1	9420	broad.mit.edu	37	8	65517349	65517349	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:65517349C>T	uc003xvj.2	-	5	1327	c.1123G>A	c.(1123-1125)GAT>AAT	p.D375N		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	375					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AGAGTCAAATCCTCCTCAACA	0.428													18	51					0	0	1	0	0
ARMC1	55156	broad.mit.edu	37	8	66517673	66517673	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:66517673G>A	uc003xvl.2	-	5	801	c.566C>T	c.(565-567)TCA>TTA	p.S189L	ARMC1_uc011leo.1_Missense_Mutation_p.S87L	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	189					metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			TTTCAAATCTGAACGGATTCG	0.333													20	78					0	0	1	0	0
TRIM55	84675	broad.mit.edu	37	8	67039548	67039548	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:67039548G>A	uc003xvv.2	+	1	271	c.45G>A	c.(43-45)CAG>CAA	p.Q15Q	TRIM55_uc003xvu.2_Silent_p.Q15Q|TRIM55_uc003xvw.2_Silent_p.Q15Q|TRIM55_uc003xvx.2_Silent_p.Q15Q	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	15	RING-type.					cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			AAGAGCAGCAGACCATGGATA	0.502													26	103					0	0	1	0	0
TRIM55	84675	broad.mit.edu	37	8	67064772	67064772	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:67064772G>A	uc003xvv.2	+	8	1372	c.1146G>A	c.(1144-1146)GTG>GTA	p.V382V	TRIM55_uc003xvu.2_Silent_p.V382V|TRIM55_uc003xvw.2_Silent_p.V382V|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	382						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			TCTCTCAGGTGGAGCTGCAGG	0.468													15	67					0	0	1	0	0
TRIM55	84675	broad.mit.edu	37	8	67066438	67066438	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:67066438G>T	uc003xvv.2	+	9	1619	c.1393G>T	c.(1393-1395)GGT>TGT	p.G465C	TRIM55_uc003xvu.2_Missense_Mutation_p.G465C|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	465						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			AGGGAGCGAAGGTCTGGGGCA	0.567													7	67					8.12818e-05	8.13859e-05	1	1	0
TRIM55	84675	broad.mit.edu	37	8	67066476	67066476	+	Silent	SNP	G	A	A	rs147341587		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:67066476G>A	uc003xvv.2	+	9	1657	c.1431G>A	c.(1429-1431)TCG>TCA	p.S477S	TRIM55_uc003xvu.2_Silent_p.S477S|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	477						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			CTGAGGATTCGAATGTACGGA	0.567													29	42					0	0	1	0	0
CRH	1392	broad.mit.edu	37	8	67089149	67089149	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:67089149C>T	uc003xvy.1	-	2	749	c.564G>A	c.(562-564)AGG>AGA	p.R188R		NM_000756	NP_000747	P06850	CRF_HUMAN	corticotropin releasing hormone precursor	188				R->A: Strongly reduced affinity for CRFR1.	female pregnancy|negative regulation of circadian sleep/wake cycle, REM sleep|parturition|positive regulation of circadian sleep/wake cycle, wakefulness|positive regulation of cortisol secretion|signal transduction|synaptic transmission	extracellular region|soluble fraction	neuropeptide hormone activity				0		all_cancers(86;2.58e-06)|all_epithelial(80;6.27e-09)|all_lung(136;0.000414)|Lung NSC(129;0.0011)	Epithelial(68;0.0136)|all cancers(69;0.0507)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)		Corticotropin(DB01285)	CCATGAGTTTCCTGTTGCTGT	0.453											OREG0018805	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	48					0	0	1	0	0
VCPIP1	80124	broad.mit.edu	37	8	67578798	67578798	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:67578798G>A	uc003xwn.2	-	1	655	c.396C>T	c.(394-396)CCC>CCT	p.P132P	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	132					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			GAGCTAATATGGGCGACAACA	0.557													27	65					0	0	1	0	0
C8orf45	157777	broad.mit.edu	37	8	67803171	67803171	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:67803171C>T	uc003xwz.3	+	10	1316	c.1145C>T	c.(1144-1146)ACT>ATT	p.T382I	C8orf45_uc011lev.1_Missense_Mutation_p.T382I|C8orf45_uc011lew.1_Missense_Mutation_p.T313I|C8orf45_uc011lex.1_Missense_Mutation_p.T140I|C8orf45_uc003xwy.3_Missense_Mutation_p.T382I	NM_173518	NP_775789	Q4G0Z9	CH045_HUMAN	minichromosome maintenance complex	382					DNA replication		ATP binding|DNA binding			ovary(1)	1	Breast(64;0.186)		Epithelial(68;0.00384)|OV - Ovarian serous cystadenocarcinoma(28;0.00913)|all cancers(69;0.0175)|BRCA - Breast invasive adenocarcinoma(89;0.206)			ATTTTTCCCACTCTATCCAGG	0.408													34	108					0	0	1	0	0
ARFGEF1	10565	broad.mit.edu	37	8	68208743	68208743	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68208743G>A	uc003xxo.1	-	5	952	c.562C>T	c.(562-564)CTC>TTC	p.L188F		NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	188					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TGATTGATGAGATTTTTGCTT	0.373													9	101					0	0	1	0	0
CPA6	57094	broad.mit.edu	37	8	68396090	68396090	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68396090G>A	uc003xxq.3	-	8	1007	c.751C>T	c.(751-753)CGA>TGA	p.R251*	CPA6_uc003xxr.3_Nonsense_Mutation_p.R103*|CPA6_uc003xxs.2_Nonsense_Mutation_p.R251*	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	251					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			CTCCAAAATCGATCCTAGACA	0.393													70	138					0	0	1	0	0
CPA6	57094	broad.mit.edu	37	8	68396094	68396094	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68396094C>T	uc003xxq.3	-	8	1004	c.748_splice	c.e8-1	p.D250_splice	CPA6_uc003xxr.3_Splice_Site_p.D102_splice|CPA6_uc003xxs.2_Intron	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor						proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			AAAATCGATCCTAGACATAAT	0.398													48	154					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68934353	68934353	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68934353G>A	uc003xxv.1	+	4	446	c.419G>A	c.(418-420)AGA>AAA	p.R140K	PREX2_uc003xxu.1_Missense_Mutation_p.R140K|PREX2_uc011lez.1_Missense_Mutation_p.R75K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	140	DH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AACAAAATAAGAACAATCCGG	0.328													5	52					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68939473	68939473	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68939473G>A	uc003xxv.1	+	5	485	c.458G>A	c.(457-459)GGA>GAA	p.G153E	PREX2_uc003xxu.1_Missense_Mutation_p.G153E|PREX2_uc011lez.1_Missense_Mutation_p.G88E	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	153	DH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ATGCTGCTTGGAGGACGGAAG	0.348													29	76					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68950480	68950480	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68950480G>T	uc003xxv.1	+	7	819	c.792G>T	c.(790-792)GTG>GTT	p.V264V	PREX2_uc003xxu.1_Silent_p.V264V|PREX2_uc011lez.1_Silent_p.V199V	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	264	PH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AAGAACGGGTGTTTTTTCTTT	0.403													26	54					2.41591e-17	2.42788e-17	1	1	0
PREX2	80243	broad.mit.edu	37	8	68950492	68950492	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68950492C>T	uc003xxv.1	+	7	831	c.804C>T	c.(802-804)TTC>TTT	p.F268F	PREX2_uc003xxu.1_Silent_p.F268F|PREX2_uc011lez.1_Silent_p.F203F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	268	PH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTTTTCTTTTCGATAATCTTT	0.398													24	54					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68968189	68968190	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68968189_68968190CC>TT	uc003xxv.1	+	10	1245_1246	c.1218_1219CC>TT	c.(1216-1221)TTCCCT>TTTTCT	p.P407S	PREX2_uc003xxu.1_Missense_Mutation_p.P407S|PREX2_uc011lez.1_Missense_Mutation_p.P342S	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	407	DEP 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TGACTACGTTCCCTAAATGCTT	0.396													29	86					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68972915	68972915	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68972915G>A	uc003xxv.1	+	11	1267	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	PREX2_uc003xxu.1_Missense_Mutation_p.E414K|PREX2_uc011lez.1_Missense_Mutation_p.E349K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	414	DEP 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTCTTGCAGCGAATTTGTGTC	0.418													19	66					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68984806	68984806	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68984806G>A	uc003xxv.1	+	14	1596	c.1569_splice	c.e14+1	p.Q523_splice	PREX2_uc003xxu.1_Splice_Site_p.Q523_splice|PREX2_uc011lez.1_Splice_Site_p.Q458_splice	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a						G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AATTGCACAGGTAAATAGACA	0.348													11	114					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68992794	68992794	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68992794G>A	uc003xxv.1	+	16	1786	c.1759G>A	c.(1759-1761)GAA>AAA	p.E587K	PREX2_uc003xxu.1_Missense_Mutation_p.E587K|PREX2_uc011lez.1_Missense_Mutation_p.E522K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	587					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AAAAGTTGTGGAAAATGTTAT	0.318													4	44					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68995622	68995622	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:68995622G>A	uc003xxv.1	+	18	2053	c.2026G>A	c.(2026-2028)GAG>AAG	p.E676K	PREX2_uc003xxu.1_Missense_Mutation_p.E676K|PREX2_uc011lez.1_Missense_Mutation_p.E611K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	676					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AAAGCCAAGAGAGTAAGTTGT	0.318													19	56					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69000001	69000001	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:69000001G>A	uc003xxv.1	+	19	2097	c.2070G>A	c.(2068-2070)CAG>CAA	p.Q690Q	PREX2_uc003xxu.1_Silent_p.Q690Q|PREX2_uc011lez.1_Silent_p.Q625Q	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	690	PDZ 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTGGCTTCCAGATCCGGGGAT	0.443													40	148					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69000035	69000035	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:69000035G>T	uc003xxv.1	+	19	2131	c.2104G>T	c.(2104-2106)GTA>TTA	p.V702L	PREX2_uc003xxu.1_Missense_Mutation_p.V702L|PREX2_uc011lez.1_Missense_Mutation_p.V637L	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	702	PDZ 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TGTGCATGCTGTAGGAAGAGG	0.453													37	142					1.47244e-24	1.48104e-24	1	1	0
PREX2	80243	broad.mit.edu	37	8	69027999	69027999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:69027999C>T	uc003xxv.1	+	26	3185	c.3158C>T	c.(3157-3159)TCA>TTA	p.S1053L		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1053					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTTCTGTCTTCAATAACATAT	0.338													7	43					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69046410	69046410	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:69046410G>A	uc003xxv.1	+	32	3910	c.3883G>A	c.(3883-3885)GAA>AAA	p.E1295K		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1295					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CAACAGCAAGGAAAATGAGAT	0.498													36	63					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69050671	69050671	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:69050671G>A	uc003xxv.1	+	33	4033	c.4006G>A	c.(4006-4008)GAA>AAA	p.E1336K		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1336					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGCCATGTTAGAAGATACACT	0.249													8	107					0	0	1	0	0
C8orf34	116328	broad.mit.edu	37	8	69445293	69445293	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:69445293C>T	uc010lyz.2	+	7	805	c.756C>T	c.(754-756)CTC>CTT	p.L252L	C8orf34_uc010lyy.1_Silent_p.L252L|C8orf34_uc003xyb.2_Silent_p.L227L	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	252					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CCGCAATGCTCTCTCAAGATT	0.373													45	118					0	0	1	0	0
C8orf34	116328	broad.mit.edu	37	8	69699681	69699681	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:69699681G>A	uc010lyz.2	+	12	1250	c.1201G>A	c.(1201-1203)GAA>AAA	p.E401K	C8orf34_uc003xyb.2_Missense_Mutation_p.E376K	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	401					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			TTTGCAGGATGAATCCTTAAA	0.358													6	25					0	0	1	0	0
SULF1	23213	broad.mit.edu	37	8	70501234	70501234	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:70501234G>A	uc010lza.1	+	8	1309	c.592G>A	c.(592-594)GAG>AAG	p.E198K	SULF1_uc003xyd.2_Missense_Mutation_p.E198K|SULF1_uc003xye.2_Missense_Mutation_p.E198K|SULF1_uc003xyf.2_Missense_Mutation_p.E198K|SULF1_uc003xyg.2_Missense_Mutation_p.E198K	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	198					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			AATCACTAACGAGAGCATTAA	0.428													18	73					0	0	1	0	0
SULF1	23213	broad.mit.edu	37	8	70501251	70501251	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:70501251C>T	uc010lza.1	+	8	1326	c.609C>T	c.(607-609)TTC>TTT	p.F203F	SULF1_uc003xyd.2_Silent_p.F203F|SULF1_uc003xye.2_Silent_p.F203F|SULF1_uc003xyf.2_Silent_p.F203F|SULF1_uc003xyg.2_Silent_p.F203F	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	203					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			TTAATTACTTCAAAATGTCTA	0.433													20	71					0	0	1	0	0
SULF1	23213	broad.mit.edu	37	8	70550872	70550872	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:70550872C>T	uc010lza.1	+	20	3137	c.2420C>T	c.(2419-2421)CCT>CTT	p.P807L	SULF1_uc003xyd.2_Missense_Mutation_p.P807L|SULF1_uc003xye.2_Missense_Mutation_p.P807L|SULF1_uc003xyf.2_Missense_Mutation_p.P807L|SULF1_uc003xyg.2_Missense_Mutation_p.P807L|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_Intron|SULF1_uc003xyj.1_5'UTR	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	807					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			AATACAGATCCTTATCAGGTA	0.348													10	107					0	0	1	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70744734	70744734	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:70744734G>A	uc003xyl.2	-	2	882	c.175C>T	c.(175-177)CCG>TCG	p.P59S	SLCO5A1_uc010lzb.2_Missense_Mutation_p.P59S|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Missense_Mutation_p.P59S|SLCO5A1_uc010lzc.2_Missense_Mutation_p.P59S	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	59	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			CCAAAGGCCGGGTTGGCGTCT	0.652											OREG0018815	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	49					0	0	1	0	0
PRDM14	63978	broad.mit.edu	37	8	70978497	70978497	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:70978497C>T	uc003xym.2	-	5	1358	c.1156G>A	c.(1156-1158)GGG>AGG	p.G386R		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	386					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			GGCTGCTTCCCCGGCTCTGTG	0.537													8	73					0	0	1	0	0
PRDM14	63978	broad.mit.edu	37	8	70981484	70981484	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:70981484G>A	uc003xym.2	-	2	814	c.612C>T	c.(610-612)TTC>TTT	p.F204F		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			CGTACAGAACGAAGTGCAGGT	0.602													27	64					0	0	1	0	0
PRDM14	63978	broad.mit.edu	37	8	70981621	70981621	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:70981621G>A	uc003xym.2	-	2	677	c.475C>T	c.(475-477)CTG>TTG	p.L159L		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	159					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			TCAGGTAACAGAGAAGCATCC	0.562													8	52					0	0	1	0	0
PRDM14	63978	broad.mit.edu	37	8	70982076	70982076	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:70982076C>T	uc003xym.2	-	2	222	c.20G>A	c.(19-21)AGT>AAT	p.S7N		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	7					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			CACGGCCTCACTTGGCCGGGG	0.687													3	8					0	0	1	0	0
NCOA2	10499	broad.mit.edu	37	8	71036137	71036137	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:71036137G>A	uc003xyn.1	-	21	4437	c.4275C>T	c.(4273-4275)TCC>TCT	p.S1425S	NCOA2_uc011lfb.1_Silent_p.S513S	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	1425					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			GACCCATGGAGGACAGCCCTG	0.522			T	RUNXBP2	AML								9	14					0	0	1	0	0
NCOA2	10499	broad.mit.edu	37	8	71036968	71036968	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:71036968G>A	uc003xyn.1	-	20	4211	c.4049C>T	c.(4048-4050)CCC>CTC	p.P1350L	NCOA2_uc011lfb.1_Missense_Mutation_p.P438L	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	1350					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			TATGTCGGAGGGGGCCTGATA	0.562			T	RUNXBP2	AML								8	52					0	0	1	0	0
NCOA2	10499	broad.mit.edu	37	8	71041035	71041035	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:71041035G>A	uc003xyn.1	-	17	3667	c.3505C>T	c.(3505-3507)CGT>TGT	p.R1169C	NCOA2_uc011lfb.1_Missense_Mutation_p.R257C	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	1169					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			GGCTGCATACGGAGTGTGGCA	0.552			T	RUNXBP2	AML								17	34					0	0	1	0	0
NCOA2	10499	broad.mit.edu	37	8	71068757	71068757	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:71068757G>A	uc003xyn.1	-	11	2005	c.1843C>T	c.(1843-1845)CCC>TCC	p.P615S		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	615					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			GGCAGGTTGGGGTCATTTGTT	0.552			T	RUNXBP2	AML								26	94					0	0	1	0	0
TRAM1	23471	broad.mit.edu	37	8	71499399	71499399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:71499399G>A	uc003xyo.1	-	7	753	c.583C>T	c.(583-585)CGT>TGT	p.R195C	TRAM1_uc011lfc.1_Missense_Mutation_p.R164C	NM_014294	NP_055109	Q15629	TRAM1_HUMAN	translocation associated membrane protein 1	195	Helical; (Potential).|TLC.				cotranslational protein targeting to membrane|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity			ovary(1)	1			Epithelial(68;0.00679)|all cancers(69;0.0324)|OV - Ovarian serous cystadenocarcinoma(28;0.0509)			ACAAGCTGACGAGGAATATCT	0.318													20	54					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72111608	72111608	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:72111608G>A	uc003xys.3	-	17	2033	c.1746C>T	c.(1744-1746)GCC>GCT	p.A582A	EYA1_uc003xyr.3_Silent_p.A547A|EYA1_uc003xyt.3_Silent_p.A549A|EYA1_uc010lzf.2_Silent_p.A509A|EYA1_uc003xyu.2_Silent_p.A582A|EYA1_uc011lfe.1_Silent_p.A576A|EYA1_uc003xyv.2_Silent_p.A460A	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	582					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CATGGTGCAGGGCCATGAGGT	0.617													7	20					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72129198	72129198	+	Splice_Site	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:72129198A>T	uc003xys.3	-	12	1486	c.1199_splice	c.e12+1	p.S400_splice	EYA1_uc003xyr.3_Splice_Site_p.S365_splice|EYA1_uc003xyt.3_Splice_Site_p.S367_splice|EYA1_uc010lzf.2_Splice_Site_p.S327_splice|EYA1_uc003xyu.2_Splice_Site_p.S400_splice|EYA1_uc011lfe.1_Splice_Site_p.S394_splice|EYA1_uc003xyv.2_Splice_Site_p.S278_splice	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b						double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			AAGGGTGCTCACCTTAGGTCC	0.358													32	80					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72233974	72233974	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:72233974G>A	uc003xys.3	-	5	700	c.413C>T	c.(412-414)TCA>TTA	p.S138L	EYA1_uc003xyr.3_Missense_Mutation_p.S138L|EYA1_uc003xyt.3_Missense_Mutation_p.S105L|EYA1_uc010lzf.2_Missense_Mutation_p.S65L|EYA1_uc003xyu.2_Missense_Mutation_p.S138L|EYA1_uc011lfe.1_Missense_Mutation_p.S137L|EYA1_uc003xyv.2_Missense_Mutation_p.S21L	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	138					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CTCACCATATGAGGAAATGCC	0.483													12	35					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72233977	72233977	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:72233977G>A	uc003xys.3	-	5	697	c.410C>T	c.(409-411)TCC>TTC	p.S137F	EYA1_uc003xyr.3_Missense_Mutation_p.S137F|EYA1_uc003xyt.3_Missense_Mutation_p.S104F|EYA1_uc010lzf.2_Missense_Mutation_p.S64F|EYA1_uc003xyu.2_Missense_Mutation_p.S137F|EYA1_uc011lfe.1_Missense_Mutation_p.S136F|EYA1_uc003xyv.2_Missense_Mutation_p.S20F	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	137					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			ACCATATGAGGAAATGCCGTA	0.488													14	34					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72234479	72234479	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:72234479G>A	uc003xys.3	-	4	514	c.227C>T	c.(226-228)CCA>CTA	p.P76L	EYA1_uc003xyr.3_Missense_Mutation_p.P76L|EYA1_uc003xyt.3_Missense_Mutation_p.P43L|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Missense_Mutation_p.P76L|EYA1_uc011lfe.1_Missense_Mutation_p.P76L|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	76					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			AGTTGGTCGTGGGCTGAAACT	0.343													18	63					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72267089	72267089	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:72267089C>T	uc003xys.3	-	2	339	c.52G>A	c.(52-54)GAA>AAA	p.E18K	EYA1_uc003xyr.3_Missense_Mutation_p.E18K|EYA1_uc003xyt.3_Intron|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Missense_Mutation_p.E18K|EYA1_uc011lfe.1_Missense_Mutation_p.E18K|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	18					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CTGGGGGATTCACTACTACCA	0.453													50	132					0	0	1	0	0
TRPA1	8989	broad.mit.edu	37	8	72945959	72945959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:72945959C>T	uc003xza.2	-	23	2963	c.2788G>A	c.(2788-2790)GAA>AAA	p.E930K	uc011lff.1_Intron|uc003xyy.2_Intron	NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	930	Extracellular (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	TGTGCCAATTCATTTCTCAGA	0.378													10	70					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73479976	73479976	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73479976G>A	uc003xzb.2	+	2	595	c.7G>A	c.(7-9)GAA>AAA	p.E3K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	3	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CAAAATGGCAGAAAAGGCTCC	0.512													42	90					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73480105	73480105	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73480105C>T	uc003xzb.2	+	2	724	c.136C>T	c.(136-138)CAC>TAC	p.H46Y		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	46	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GGGCCTCAACCACGAAGTCCT	0.572													42	79					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73480155	73480155	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73480155G>A	uc003xzb.2	+	2	774	c.186G>A	c.(184-186)GGG>GGA	p.G62G		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	62	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CGCGCCTGGGGAAGCTTCGAG	0.552													23	105					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73480281	73480281	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73480281G>A	uc003xzb.2	+	2	900	c.312G>A	c.(310-312)CGG>CGA	p.R104R		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	104	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ATTTCTACCGGACCGGGAAAC	0.463													29	64					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73848257	73848257	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73848257G>A	uc003xzb.2	+	3	1255	c.667G>A	c.(667-669)GAA>AAA	p.E223K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	223					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GGAAACGGACGAATTTGGACA	0.478													54	113					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73848367	73848367	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73848367G>A	uc003xzb.2	+	3	1365	c.777G>A	c.(775-777)TGG>TGA	p.W259*		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	259	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CAAATAAATGGAAGTTCTTCA	0.453													26	81					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73848668	73848668	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73848668G>A	uc003xzb.2	+	3	1666	c.1078G>A	c.(1078-1080)GAA>AAA	p.E360K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	360					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TGAGAAGGATGAAGATGCTAC	0.438													40	182					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73848916	73848916	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73848916G>A	uc003xzb.2	+	3	1914	c.1326G>A	c.(1324-1326)CGG>CGA	p.R442R		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	442	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CTCTTGAGCGGGCCAAAAGGA	0.453													26	83					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73849489	73849489	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73849489C>T	uc003xzb.2	+	3	2487	c.1899C>T	c.(1897-1899)TTC>TTT	p.F633F		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	633	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			AGATGAAGTTCCCAACCGACC	0.607													40	114					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73849514	73849514	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73849514G>A	uc003xzb.2	+	3	2512	c.1924G>A	c.(1924-1926)GAG>AAG	p.E642K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	642	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			AGGGACAGAAGAGCACCAAAG	0.592													37	101					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73849774	73849774	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:73849774G>A	uc003xzb.2	+	3	2772	c.2184G>A	c.(2182-2184)CAG>CAA	p.Q728Q		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	728	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GTGCACCACAGACCCCGCCCA	0.532													56	110					0	0	1	0	0
STAU2	27067	broad.mit.edu	37	8	74600939	74600939	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:74600939A>G	uc003xzm.2	-	5	460	c.224T>C	c.(223-225)CTT>CCT	p.L75P	STAU2_uc011lfg.1_Intron|STAU2_uc003xzn.2_Missense_Mutation_p.L43P|STAU2_uc011lfh.1_Intron|STAU2_uc003xzo.2_Missense_Mutation_p.L75P|STAU2_uc003xzp.2_Missense_Mutation_p.L43P|STAU2_uc011lfi.1_Missense_Mutation_p.L37P|STAU2_uc003xzq.2_Intron|STAU2_uc010lzk.2_Missense_Mutation_p.L43P|STAU2_uc010lzl.1_Intron|STAU2_uc003xzs.2_Missense_Mutation_p.L43P|STAU2_uc003xzr.2_Missense_Mutation_p.L37P	NM_014393	NP_055208	Q9NUL3	STAU2_HUMAN	staufen homolog 2 isoform e	75	DRBM 1.				transport	endoplasmic reticulum|microtubule|nucleolus	double-stranded RNA binding				0	Breast(64;0.0138)		Epithelial(68;0.026)|BRCA - Breast invasive adenocarcinoma(89;0.0483)|all cancers(69;0.0972)			TGGTTTGGGAAGCGTAGATTC	0.463													40	205					0	0	1	0	0
UBE2W	55284	broad.mit.edu	37	8	74722759	74722759	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:74722759G>A	uc003xzv.2	-	4	369	c.316C>T	c.(316-318)CAA>TAA	p.Q106*	UBE2W_uc003xzt.2_Nonsense_Mutation_p.Q106*|UBE2W_uc003xzu.2_Nonsense_Mutation_p.Q117*|UBE2W_uc003xzw.2_RNA	NM_018299	NP_060769	Q96B02	UBE2W_HUMAN	ubiquitin-conjugating enzyme E2W (putative)	106					protein K11-linked ubiquitination|protein monoubiquitination		ATP binding|protein binding|ubiquitin-protein ligase activity				0	Breast(64;0.0311)		Epithelial(68;0.0235)|all cancers(69;0.0687)|BRCA - Breast invasive adenocarcinoma(89;0.069)			CAAACTGATTGGACTGAGAGC	0.378													30	83					0	0	1	0	0
JPH1	56704	broad.mit.edu	37	8	75156789	75156789	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:75156789G>A	uc003yae.2	-	4	1920	c.1880C>T	c.(1879-1881)CCT>CTT	p.P627L	JPH1_uc003yaf.2_Missense_Mutation_p.P627L|JPH1_uc003yag.1_Missense_Mutation_p.P491L	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	627	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			TTCCAAAGCAGGGCATGAATC	0.433													30	169					0	0	1	0	0
JPH1	56704	broad.mit.edu	37	8	75157303	75157303	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:75157303A>T	uc003yae.2	-	4	1406	c.1366T>A	c.(1366-1368)TAT>AAT	p.Y456N	JPH1_uc003yaf.2_Missense_Mutation_p.Y456N|JPH1_uc003yag.1_Missense_Mutation_p.Y320N	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	456	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CCTTTGCGATAAAAATGAGGA	0.483													15	116					0	0	1	0	0
JPH1	56704	broad.mit.edu	37	8	75227339	75227339	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:75227339G>A	uc003yae.2	-	2	936	c.896C>T	c.(895-897)TCC>TTC	p.S299F	JPH1_uc003yaf.2_Missense_Mutation_p.S299F|JPH1_uc003yag.1_Missense_Mutation_p.S163F	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	299	Cytoplasmic (Potential).|MORN 6.				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CATGCCATTGGAGCGCTCGCT	0.537													26	159					0	0	1	0	0
HNF4G	3174	broad.mit.edu	37	8	76463724	76463724	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:76463724C>T	uc003yaq.2	+	5	613	c.343C>T	c.(343-345)CGC>TGC	p.R115C	HNF4G_uc003yar.2_Missense_Mutation_p.R152C	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	115					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			AGTTCGGTCTCGCCAGGTACC	0.423													9	34					0	0	1	0	0
HNF4G	3174	broad.mit.edu	37	8	76468259	76468259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:76468259G>A	uc003yaq.2	+	7	817	c.547G>A	c.(547-549)GGA>AGA	p.G183R	HNF4G_uc003yar.2_Missense_Mutation_p.G220R	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	183					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			CTTACTGCTTGGAGCTACAAA	0.284													15	65					0	0	1	0	0
HNF4G	3174	broad.mit.edu	37	8	76472668	76472668	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:76472668C>T	uc003yaq.2	+	10	1342	c.1072C>T	c.(1072-1074)CCC>TCC	p.P358S	HNF4G_uc003yar.2_Missense_Mutation_p.P395S	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	358					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			ACTTTTAGGTCCCATGTCAAC	0.393													11	42					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617473	77617473	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77617473G>A	uc003yav.2	+	2	1537	c.1150G>A	c.(1150-1152)GGA>AGA	p.G384R	ZFHX4_uc003yat.1_Missense_Mutation_p.G384R|ZFHX4_uc003yau.1_Missense_Mutation_p.G384R|ZFHX4_uc003yaw.1_Missense_Mutation_p.G384R	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	384						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTTCTTAAAAGGAAGCGCGAG	0.517										HNSCC(33;0.089)			15	53					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618198	77618198	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77618198G>A	uc003yav.2	+	2	2262	c.1875G>A	c.(1873-1875)TCG>TCA	p.S625S	ZFHX4_uc003yat.1_Silent_p.S625S|ZFHX4_uc003yau.1_Silent_p.S625S|ZFHX4_uc003yaw.1_Silent_p.S625S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	625	C2H2-type 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGGGGTCTTCGAGGTCTCTTG	0.532										HNSCC(33;0.089)			19	48					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77619947	77619947	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77619947C>T	uc003yav.2	+	3	3066	c.2679C>T	c.(2677-2679)GCC>GCT	p.A893A	ZFHX4_uc003yat.1_Silent_p.A893A|ZFHX4_uc003yau.1_Silent_p.A919A|ZFHX4_uc003yaw.1_Silent_p.A893A	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	893						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCCTGGAGGCCCTAAGTGTGC	0.507										HNSCC(33;0.089)			6	40					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77762534	77762534	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77762534C>T	uc003yav.2	+	9	4152	c.3765C>T	c.(3763-3765)GCC>GCT	p.A1255A	ZFHX4_uc003yau.1_Silent_p.A1300A|ZFHX4_uc003yaw.1_Silent_p.A1255A	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1255						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGCAGCTGCCTCTGAGAAAT	0.478										HNSCC(33;0.089)			10	14					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764842	77764842	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77764842C>T	uc003yav.2	+	10	5937	c.5550C>T	c.(5548-5550)ATC>ATT	p.I1850I	ZFHX4_uc003yau.1_Silent_p.I1895I|ZFHX4_uc003yaw.1_Silent_p.I1850I	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1850						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AACCATCCATCCCACCACCCC	0.433										HNSCC(33;0.089)			8	16					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766120	77766120	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77766120C>T	uc003yav.2	+	10	7215	c.6828C>T	c.(6826-6828)TTC>TTT	p.F2276F	ZFHX4_uc003yau.1_Silent_p.F2321F|ZFHX4_uc003yaw.1_Silent_p.F2276F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2276	C2H2-type 15; degenerate.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATGTGGTTTTCCCCAGGATCT	0.393										HNSCC(33;0.089)			20	41					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766216	77766216	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77766216G>A	uc003yav.2	+	10	7311	c.6924G>A	c.(6922-6924)ATG>ATA	p.M2308I	ZFHX4_uc003yau.1_Missense_Mutation_p.M2353I|ZFHX4_uc003yaw.1_Missense_Mutation_p.M2308I	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2308						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AAGACTCCATGGATGCCACTG	0.473										HNSCC(33;0.089)			42	118					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766837	77766837	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77766837C>T	uc003yav.2	+	10	7932	c.7545C>T	c.(7543-7545)CCC>CCT	p.P2515P	ZFHX4_uc003yau.1_Silent_p.P2560P|ZFHX4_uc003yaw.1_Silent_p.P2515P	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2515						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTCAAATGCCCCCTCAGGCCA	0.498										HNSCC(33;0.089)			17	63					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767332	77767332	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77767332G>A	uc003yav.2	+	10	8427	c.8040G>A	c.(8038-8040)CAG>CAA	p.Q2680Q	ZFHX4_uc003yau.1_Silent_p.Q2725Q|ZFHX4_uc003yaw.1_Silent_p.Q2680Q	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2680						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AAAGCCCACAGAAATACATCT	0.428										HNSCC(33;0.089)			5	29					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768152	77768152	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77768152C>T	uc003yav.2	+	10	9247	c.8860C>T	c.(8860-8862)CAA>TAA	p.Q2954*	ZFHX4_uc003yau.1_Nonsense_Mutation_p.Q2999*|ZFHX4_uc003yaw.1_Nonsense_Mutation_p.Q2954*	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2954						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CATGATCAATCAAGGCGGAAC	0.473										HNSCC(33;0.089)			7	15					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77776193	77776193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77776193G>A	uc003yav.2	+	11	10495	c.10108G>A	c.(10108-10110)GAA>AAA	p.E3370K		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3366	C2H2-type 19; degenerate.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GTTTACTGATGAAGACGCCGC	0.418										HNSCC(33;0.089)			3	20					0	0	1	0	0
PEX2	5828	broad.mit.edu	37	8	77896041	77896041	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:77896041C>T	uc003yax.2	-	4	832	c.374G>A	c.(373-375)CGA>CAA	p.R125Q	PEX2_uc003yay.2_Missense_Mutation_p.R125Q|PEX2_uc003yaz.2_Missense_Mutation_p.R125Q	NM_000318	NP_000309	P28328	PEX2_HUMAN	peroxin 2	125					peroxisome organization	integral to peroxisomal membrane	protein binding|zinc ion binding			ovary(1)	1						ATGATGGTTTCGAAACAAATC	0.363													35	88					0	0	1	0	0
PKIA	5569	broad.mit.edu	37	8	79513998	79513998	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:79513998G>A	uc003yba.2	+	4	697	c.173G>A	c.(172-174)CGA>CAA	p.R58Q	PKIA_uc003ybb.2_Missense_Mutation_p.R58Q|PKIA_uc010lzo.2_Missense_Mutation_p.R58Q	NM_006823	NP_006814	P61925	IPKA_HUMAN	cAMP-dependent protein kinase inhibitor alpha	58							cAMP-dependent protein kinase inhibitor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GATGCACAACGAAGTTCTACA	0.388													7	31					0	0	1	0	0
FAM164A	51101	broad.mit.edu	37	8	79629625	79629625	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:79629625C>T	uc003ybd.2	+	9	977	c.875C>T	c.(874-876)TCA>TTA	p.S292L		NM_016010	NP_057094	Q96GY0	F164A_HUMAN	hypothetical protein LOC51101	292										ovary(1)	1						GAAGGACATTCACCTGGAAAC	0.383													47	123					0	0	1	0	0
FAM164A	51101	broad.mit.edu	37	8	79629664	79629664	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:79629664C>A	uc003ybd.2	+	9	1016	c.914C>A	c.(913-915)ACT>AAT	p.T305N		NM_016010	NP_057094	Q96GY0	F164A_HUMAN	hypothetical protein LOC51101	305										ovary(1)	1						GAGTGTGGGACTAAATACCCT	0.388													58	131					2.60599e-31	2.62188e-31	1	1	0
FAM164A	51101	broad.mit.edu	37	8	79629673	79629673	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:79629673C>T	uc003ybd.2	+	9	1025	c.923C>T	c.(922-924)CCT>CTT	p.P308L		NM_016010	NP_057094	Q96GY0	F164A_HUMAN	hypothetical protein LOC51101	308										ovary(1)	1						ACTAAATACCCTGTAGAATGG	0.368													59	132					0	0	1	0	0
IL7	3574	broad.mit.edu	37	8	79710412	79710412	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:79710412G>A	uc003ybg.2	-	2	643	c.42C>T	c.(40-42)CCC>CCT	p.P14P	IL7_uc003ybe.2_5'UTR|IL7_uc011lfm.1_RNA|IL7_uc003ybh.2_RNA|IL7_uc003ybi.3_RNA	NM_000880	NP_000871	P13232	IL7_HUMAN	interleukin 7 precursor	14					bone resorption|cell-cell signaling|humoral immune response|organ morphogenesis|positive regulation of B cell proliferation|positive regulation of T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-7 receptor binding				0						CAAGGATCAGGGGAGGAAGTC	0.353													13	51					0	0	1	0	0
STMN2	11075	broad.mit.edu	37	8	80567198	80567198	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:80567198C>T	uc003ybj.2	+	4	432	c.381C>T	c.(379-381)TTC>TTT	p.F127F	STMN2_uc010lzp.2_RNA|STMN2_uc011lfn.1_Intron	NM_007029	NP_008960	Q93045	STMN2_HUMAN	superiorcervical ganglia, neural specific 10	127	Potential.				intracellular signal transduction|negative regulation of microtubule depolymerization|negative regulation of microtubule polymerization|negative regulation of neuron projection development|neuron differentiation|positive regulation of microtubule depolymerization|positive regulation of neuron projection development	axon|growth cone|membrane|membrane fraction|perinuclear region of cytoplasm|soluble fraction	protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(9;8.34e-05)		Epithelial(68;0.0229)|all cancers(69;0.0874)			ACAACAACTTCAGCAAGATGG	0.478													20	43					0	0	1	0	0
PMP2	5375	broad.mit.edu	37	8	82357106	82357107	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:82357106_82357107GG>AA	uc003ycb.1	-	2	289_290	c.191_192CC>TT	c.(190-192)TCC>TTT	p.S64F	PMP2_uc010lzv.1_Intron	NM_002677	NP_002668	P02689	MYP2_HUMAN	peripheral myelin protein 2	64						cytoplasm	cholesterol binding|fatty acid binding|transporter activity				0			Epithelial(68;0.186)			CTAGCTTGAAGGAGATTTCTGT	0.391													9	78					0	0	1	0	0
FABP12	646486	broad.mit.edu	37	8	82441730	82441730	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:82441730G>A	uc011lfp.1	-	2	189	c.189C>T	c.(187-189)ATC>ATT	p.I63I	FABP12_uc003ycg.3_RNA	NM_001105281	NP_001098751	A6NFH5	FBP12_HUMAN	fatty acid binding protein 12	63							lipid binding|transporter activity				0						GCTTAAAGGAGATCTCATTAT	0.428													45	97					0	0	1	0	0
CHMP4C	92421	broad.mit.edu	37	8	82670728	82670728	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:82670728G>A	uc003ycl.2	+	5	825	c.651G>A	c.(649-651)AGG>AGA	p.R217R		NM_152284	NP_689497	Q96CF2	CHM4C_HUMAN	chromatin modifying protein 4C	217	Intramolecular interaction with N- terminus (By similarity).				cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			ovary(2)	2						CTTCCCAGAGGGCAGAAGAAG	0.313													19	85					0	0	1	0	0
RALYL	138046	broad.mit.edu	37	8	85799849	85799849	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:85799849G>A	uc003ycq.3	+	9	1112	c.696G>A	c.(694-696)AAG>AAA	p.K232K	RALYL_uc003ycr.3_Silent_p.K232K|RALYL_uc003ycs.3_Silent_p.K232K|RALYL_uc010lzy.2_Silent_p.K221K|RALYL_uc003yct.3_Silent_p.K245K|RALYL_uc003ycu.3_Silent_p.K159K|RALYL_uc003ycv.3_Intron	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	232	Potential.						identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						AAGCTCAGAAGAAGCAATTGG	0.483													5	67					0	0	1	0	0
LRRCC1	85444	broad.mit.edu	37	8	86049712	86049712	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:86049712C>T	uc003ycw.2	+	15	2497	c.2343C>T	c.(2341-2343)GCC>GCT	p.A781A	LRRCC1_uc010maa.1_Silent_p.A482A|LRRCC1_uc003ycx.2_Silent_p.A688A|LRRCC1_uc003ycy.2_Silent_p.A761A	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	781					cell division|mitosis	centriole|nucleus					0						CTTCTCTAGCCCAAAATCGTG	0.318													18	74					0	0	1	0	0
CA13	377677	broad.mit.edu	37	8	86163062	86163062	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:86163062C>T	uc003ydg.2	+	2	473	c.131C>T	c.(130-132)TCC>TTC	p.S44F	CA13_uc003ydf.1_RNA	NM_198584	NP_940986	Q8N1Q1	CAH13_HUMAN	carbonic anhydrase XIII	44					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0						TATGACTCTTCCCTCCGACCA	0.398													66	140					0	0	1	0	0
CA3	761	broad.mit.edu	37	8	86358415	86358415	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:86358415C>T	uc003ydj.2	+	6	635	c.552C>T	c.(550-552)TTC>TTT	p.F184F	CA3_uc011lfv.1_RNA	NM_005181	NP_005172	P07451	CAH3_HUMAN	carbonic anhydrase III	184					one-carbon metabolic process	cytoplasm	carbonate dehydratase activity|zinc ion binding				0						CCTGCCTGTTCCCGGCATGCC	0.607													8	20					0	0	1	0	0
CA2	760	broad.mit.edu	37	8	86386565	86386565	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:86386565C>T	uc003ydk.2	+	4	544	c.364C>T	c.(364-366)CAC>TAC	p.H122Y		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	122					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	TCACTTGGTTCACTGGAACAC	0.408													67	149					0	0	1	0	0
CA2	760	broad.mit.edu	37	8	86389422	86389422	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:86389422C>T	uc003ydk.2	+	6	761	c.581C>T	c.(580-582)CCA>CTA	p.P194L		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	194					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	TGGACCTACCCAGGCTCACTG	0.512													32	240					0	0	1	0	0
CA2	760	broad.mit.edu	37	8	86392931	86392931	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:86392931G>A	uc003ydk.2	+	7	876	c.696G>A	c.(694-696)GGG>GGA	p.G232G		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	232					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	ACTTCAATGGGGAGGGTGAAC	0.393													23	45					0	0	1	0	0
REXO1L1	254958	broad.mit.edu	37	8	86573806	86573806	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:86573806C>T	uc011lfw.1	-	1	1463	c.1417G>A	c.(1417-1419)GAG>AAG	p.E473K		NM_172239	NP_758439	Q8IX06	GOR_HUMAN	exonuclease GOR	641						cytoplasm|nucleus	exonuclease activity|nucleic acid binding				0						CTTGCGTCCTCGCTGGAGTTG	0.672													7	48					0	0	1	0	0
PSKH2	85481	broad.mit.edu	37	8	87076221	87076221	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87076221C>T	uc011lfy.1	-	2	825	c.825G>A	c.(823-825)CTG>CTA	p.L275L		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	275	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			ATTTGCCTTTCAGAATCTTCC	0.333													10	42					0	0	1	0	0
PSKH2	85481	broad.mit.edu	37	8	87076389	87076389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87076389C>T	uc011lfy.1	-	2	657	c.657G>A	c.(655-657)ATG>ATA	p.M219I		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	219	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			AGAGTGTCTTCATTGTCCAGT	0.438													7	77					0	0	1	0	0
PSKH2	85481	broad.mit.edu	37	8	87076588	87076588	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87076588C>T	uc011lfy.1	-	2	458	c.458G>A	c.(457-459)GGA>GAA	p.G153E		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	153	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			TGTAAAGGATCCCTGAGCAAT	0.488													17	61					0	0	1	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87151852	87151852	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87151852G>A	uc003ydp.1	+	3	538	c.469G>A	c.(469-471)GAA>AAA	p.E157K		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	157					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						CATTCTGATCGAAACGCCATT	0.418													30	74					0	0	1	0	0
SLC7A13	157724	broad.mit.edu	37	8	87229775	87229775	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87229775G>A	uc003ydq.1	-	3	1201	c.1103C>T	c.(1102-1104)TCA>TTA	p.S368L	SLC7A13_uc003ydr.1_Missense_Mutation_p.S359L	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	368	Helical; Name=10; (Potential).					integral to membrane	amino acid transmembrane transporter activity	p.S368L(1)		central_nervous_system(1)	1						AGACCATAATGAACCCGTGAA	0.323													13	56					0	0	1	0	0
SLC7A13	157724	broad.mit.edu	37	8	87229949	87229949	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87229949G>A	uc003ydq.1	-	3	1027	c.929C>T	c.(928-930)TCA>TTA	p.S310L	SLC7A13_uc003ydr.1_Missense_Mutation_p.S301L	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	310	Cytoplasmic (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						TGGTCTCGATGATTTAAATAT	0.383													52	153					0	0	1	0	0
SLC7A13	157724	broad.mit.edu	37	8	87235216	87235216	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87235216C>T	uc003ydq.1	-	2	900	c.802G>A	c.(802-804)GAA>AAA	p.E268K	SLC7A13_uc003ydr.1_Missense_Mutation_p.E259K	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	268	Extracellular (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						GAGAGAATTTCCCTGGGTGTC	0.383													35	102					0	0	1	0	0
SLC7A13	157724	broad.mit.edu	37	8	87241866	87241867	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87241866_87241867CC>TT	uc003ydq.1	-	1	738_739	c.640_641GG>AA	c.(640-642)GGA>AAA	p.G214K	SLC7A13_uc003ydr.1_Missense_Mutation_p.G214K	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	214	Helical; Name=6; (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						TGCAAAATATCCTTGGAAGATG	0.366													33	109					0	0	1	0	0
WWP1	11059	broad.mit.edu	37	8	87392992	87392992	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87392992C>T	uc003ydt.2	+	4	388	c.108C>T	c.(106-108)TTC>TTT	p.F36F	WWP1_uc010mai.2_5'UTR	NM_007013	NP_008944	Q9H0M0	WWP1_HUMAN	WW domain containing E3 ubiquitin protein ligase	36	C2.				central nervous system development|entry of virus into host cell|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|signal transduction	cytoplasm|nucleus|plasma membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			lung(1)|liver(1)	2						AGAACTGGTTCGGAACAGCAA	0.348													9	38					0	0	1	0	0
CPNE3	8895	broad.mit.edu	37	8	87557009	87557009	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87557009C>T	uc003ydv.2	+	9	837	c.675C>T	c.(673-675)CTC>CTT	p.L225L	CPNE3_uc003ydw.1_5'Flank	NM_003909	NP_003900	O75131	CPNE3_HUMAN	copine III	225	C2 2.				lipid metabolic process|vesicle-mediated transport	cytosol	calcium-dependent phospholipid binding|protein serine/threonine kinase activity|transporter activity			ovary(1)|skin(1)	2						CACATGATCTCATTGGAACAT	0.299													48	104					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87591451	87591451	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87591451C>T	uc003ydx.2	-	16	1857	c.1811G>A	c.(1810-1812)CGA>CAA	p.R604Q	CNGB3_uc010maj.2_Missense_Mutation_p.R461Q	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	604	Cytoplasmic (Potential).|cGMP (By similarity).	cGMP (By similarity).			signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ATTGGCAGTTCGACGGTTTCC	0.423													49	183					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87645063	87645063	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87645063C>T	uc003ydx.2	-	11	1283	c.1237G>A	c.(1237-1239)GAA>AAA	p.E413K	CNGB3_uc010maj.2_Missense_Mutation_p.E275K	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	413	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GTTTGTGGTTCTGGAAGGCCA	0.323													17	44					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87656093	87656093	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87656093C>T	uc003ydx.2	-	10	1110	c.1064G>A	c.(1063-1065)CGA>CAA	p.R355Q	CNGB3_uc010maj.2_Missense_Mutation_p.R217Q	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	355	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TCCAGTTGTTCGAATAACTCT	0.358													30	63					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87679347	87679348	+	Silent	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87679347_87679348GG>AA	uc003ydx.2	-	6	703_704	c.657_658CC>TT	c.(655-660)CTCCTG>CTTTTG	p.219_220LL>LL	CNGB3_uc010maj.2_Silent_p.81_82LL>LL	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	219_220	Helical; Name=H1; (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						AAGAGCCACAGGAGATAGAGTC	0.45													9	31					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87679359	87679359	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87679359G>A	uc003ydx.2	-	6	692	c.646C>T	c.(646-648)CGA>TGA	p.R216*	CNGB3_uc010maj.2_Nonsense_Mutation_p.R78*	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	216	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						AGATAGAGTCGATCTGGAAAA	0.453													8	21					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87683257	87683257	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:87683257C>T	uc003ydx.2	-	4	454	c.408G>A	c.(406-408)GTG>GTA	p.V136V	CNGB3_uc010maj.2_5'UTR	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	136	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GCATTCTTTTCACCAGGTTGT	0.468													80	259					0	0	1	0	0
CNBD1	168975	broad.mit.edu	37	8	88249327	88249327	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:88249327C>T	uc003ydy.2	+	6	806	c.758C>T	c.(757-759)TCA>TTA	p.S253L		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	253										ovary(3)	3						TACCTACCTTCATATGACTCA	0.383													19	40					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885216	88885216	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:88885216G>A	uc003ydz.2	-	1	1081	c.984C>T	c.(982-984)GTC>GTT	p.V328V		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	328	WD 2.									ovary(1)	1						CGGCCGCCACGACTCCTTCTT	0.572													20	57					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885275	88885275	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:88885275C>T	uc003ydz.2	-	1	1022	c.925G>A	c.(925-927)GAA>AAA	p.E309K		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	309										ovary(1)	1						ACATGACCTTCGTACTGTGTT	0.517													13	71					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88886058	88886058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:88886058C>T	uc003ydz.2	-	1	239	c.142G>A	c.(142-144)GAG>AAG	p.E48K		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	48										ovary(1)	1						ACACGCAGCTCGCGAGCTATA	0.502													28	78					0	0	1	0	0
MMP16	4325	broad.mit.edu	37	8	89068470	89068470	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:89068470T>G	uc003yeb.3	-	8	1541	c.1259A>C	c.(1258-1260)CAA>CCA	p.Q420P		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	420	Hemopexin-like 2.|Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						GTAACCAGGTTGAAGAGTTGT	0.343													33	67					0	0	1	0	0
MMP16	4325	broad.mit.edu	37	8	89128865	89128865	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:89128865C>T	uc003yeb.3	-	6	1236	c.954G>A	c.(952-954)AGG>AGA	p.R318R	MMP16_uc003yec.2_Silent_p.R318R	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	318	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						TGTCATTTTTCCTTGGGTCAG	0.527													50	118					0	0	1	0	0
CALB1	793	broad.mit.edu	37	8	91075654	91075654	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:91075654C>T	uc003yel.1	-	7	668	c.486G>A	c.(484-486)CTG>CTA	p.L162L	CALB1_uc011lge.1_Silent_p.L105L	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	162	3.|EF-hand 4.					nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			CAGTTAATTCCAGCTTCCCAT	0.313													12	51					0	0	1	0	0
SLC26A7	115111	broad.mit.edu	37	8	92307812	92307812	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:92307812C>T	uc003yex.2	+	5	636	c.358C>T	c.(358-360)CCT>TCT	p.P120S	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.P120S|SLC26A7_uc003yfa.2_Missense_Mutation_p.P120S	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	120	Extracellular (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			ACGGATTGTCCCTCAGAACAT	0.458													31	89					0	0	1	0	0
SLC26A7	115111	broad.mit.edu	37	8	92346621	92346621	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:92346621G>A	uc003yex.2	+	7	1019	c.741G>A	c.(739-741)CTG>CTA	p.L247L	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Silent_p.L247L|SLC26A7_uc003yfa.2_Silent_p.L247L	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	247	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TTAAAGAGCTGAATGAACAGT	0.338													25	54					0	0	1	0	0
SLC26A7	115111	broad.mit.edu	37	8	92401568	92401568	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:92401568G>A	uc003yex.2	+	17	1956	c.1678G>A	c.(1678-1680)GAA>AAA	p.E560K	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.E560K|SLC26A7_uc003yfa.2_Missense_Mutation_p.E560K	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	560	STAS.|Cytoplasmic (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TCCTACAGAAGAAGCTTCACA	0.438													86	173					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	92999147	92999147	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:92999147C>T	uc003yfd.2	-	7	1129	c.1045G>A	c.(1045-1047)GAA>AAA	p.E349K	RUNX1T1_uc003yfc.1_Missense_Mutation_p.E322K|RUNX1T1_uc003yfe.1_Missense_Mutation_p.E312K|RUNX1T1_uc010mao.2_Missense_Mutation_p.E322K|RUNX1T1_uc011lgi.1_Missense_Mutation_p.E360K|RUNX1T1_uc010man.1_5'UTR|RUNX1T1_uc003yfb.1_Missense_Mutation_p.E312K	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	349	Important for oligomerization.				generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.R349W(1)		lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TCTGCCCATTCTCTGTCTGTT	0.383													43	113					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	93017344	93017344	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:93017344C>T	uc003yfd.2	-	5	824	c.740G>A	c.(739-741)AGA>AAA	p.R247K	RUNX1T1_uc003yfc.1_Missense_Mutation_p.R220K|RUNX1T1_uc003yfe.1_Missense_Mutation_p.R210K|RUNX1T1_uc010mao.2_Missense_Mutation_p.R220K|RUNX1T1_uc011lgi.1_Missense_Mutation_p.R258K|RUNX1T1_uc003yfb.1_Missense_Mutation_p.R210K|RUNX1T1_uc003yff.1_Missense_Mutation_p.R210K	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	247					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TCCCTCTCACCTGTCTGGAGT	0.512													21	100					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	93017356	93017356	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:93017356C>T	uc003yfd.2	-	5	812	c.728G>A	c.(727-729)CGA>CAA	p.R243Q	RUNX1T1_uc003yfc.1_Missense_Mutation_p.R216Q|RUNX1T1_uc003yfe.1_Missense_Mutation_p.R206Q|RUNX1T1_uc010mao.2_Missense_Mutation_p.R216Q|RUNX1T1_uc011lgi.1_Missense_Mutation_p.R254Q|RUNX1T1_uc003yfb.1_Missense_Mutation_p.R206Q|RUNX1T1_uc003yff.1_Missense_Mutation_p.R206Q	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	243					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GTCTGGAGTTCGCCTCTTCCC	0.522													21	113					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	93017372	93017372	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:93017372C>T	uc003yfd.2	-	5	796	c.712G>A	c.(712-714)GAA>AAA	p.E238K	RUNX1T1_uc003yfc.1_Missense_Mutation_p.E211K|RUNX1T1_uc003yfe.1_Missense_Mutation_p.E201K|RUNX1T1_uc010mao.2_Missense_Mutation_p.E211K|RUNX1T1_uc011lgi.1_Missense_Mutation_p.E249K|RUNX1T1_uc003yfb.1_Missense_Mutation_p.E201K|RUNX1T1_uc003yff.1_Missense_Mutation_p.E201K	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	238					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TTCCCGTTTTCGTTCACATCG	0.542													15	127					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	93017381	93017381	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:93017381C>T	uc003yfd.2	-	5	787	c.703G>A	c.(703-705)GAT>AAT	p.D235N	RUNX1T1_uc003yfc.1_Missense_Mutation_p.D208N|RUNX1T1_uc003yfe.1_Missense_Mutation_p.D198N|RUNX1T1_uc010mao.2_Missense_Mutation_p.D208N|RUNX1T1_uc011lgi.1_Missense_Mutation_p.D246N|RUNX1T1_uc003yfb.1_Missense_Mutation_p.D198N|RUNX1T1_uc003yff.1_Missense_Mutation_p.D198N	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	235					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TCGTTCACATCGAGAAGCAGC	0.552													24	119					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	93029461	93029461	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:93029461C>T	uc003yfd.2	-	2	303	c.219G>A	c.(217-219)CCG>CCA	p.P73P	RUNX1T1_uc003yfc.1_Silent_p.P46P|RUNX1T1_uc003yfe.1_Silent_p.P36P|RUNX1T1_uc010mao.2_Silent_p.P46P|RUNX1T1_uc011lgi.1_Silent_p.P84P|RUNX1T1_uc003yfh.1_Silent_p.P36P|RUNX1T1_uc003yfb.1_Silent_p.P36P|RUNX1T1_uc003yff.1_Silent_p.P36P|RUNX1T1_uc003yfg.1_Silent_p.P36P	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	73					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TACACGTTGTCGGTGTAAATG	0.388													17	84					0	0	1	0	0
RBM12B	389677	broad.mit.edu	37	8	94746701	94746701	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:94746701G>A	uc003yfz.2	-	3	2131	c.1938C>T	c.(1936-1938)CTC>CTT	p.L646L		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	646							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			CCTCCTCGGGGAGCTGCCTGA	0.647													26	146					0	0	1	0	0
TMEM67	91147	broad.mit.edu	37	8	94822081	94822081	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:94822081C>T	uc011lgk.1	+	26	2801	c.2730C>T	c.(2728-2730)TTC>TTT	p.F910F	TMEM67_uc010maw.2_Silent_p.F616F|TMEM67_uc003yga.3_Silent_p.F829F|TMEM67_uc011lgl.1_Silent_p.F309F	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	910					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			GAATGGAATTCATGGAACCAA	0.299													18	54					0	0	1	0	0
PDP1	54704	broad.mit.edu	37	8	94935499	94935499	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:94935499C>T	uc003yge.2	+	2	1481	c.1212C>T	c.(1210-1212)CAC>CAT	p.H404H	PDP1_uc003ygf.2_Silent_p.H429H|PDP1_uc010max.2_Silent_p.H429H|PDP1_uc011lgm.1_Silent_p.H404H|PDP1_uc011lgn.1_Silent_p.H463H	NM_018444	NP_060914	Q9P0J1	PDP1_HUMAN	pyruvate dehyrogenase phosphatase catalytic	404					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						TAACTTACCACCGATTAAGGC	0.458													35	107					0	0	1	0	0
CDH17	1015	broad.mit.edu	37	8	95142932	95142932	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95142932G>A	uc003ygh.2	-	17	2445	c.2320C>T	c.(2320-2322)CGG>TGG	p.R774W	CDH17_uc011lgo.1_Intron|CDH17_uc011lgp.1_Missense_Mutation_p.R774W	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	774	Cadherin 7.|Extracellular (Potential).					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			CCTGCTGGCCGGAAACAACTT	0.448													15	34					0	0	1	0	0
GEM	2669	broad.mit.edu	37	8	95265325	95265325	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95265325C>T	uc003ygj.2	-	3	596	c.347G>A	c.(346-348)CGA>CAA	p.R116Q	GEM_uc003ygi.2_Missense_Mutation_p.R116Q	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	116					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			CATCAGGGTTCGTTCATATGT	0.413													42	87					0	0	1	0	0
RAD54B	25788	broad.mit.edu	37	8	95403849	95403849	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95403849G>A	uc003ygk.2	-	10	1895	c.1797C>T	c.(1795-1797)TTC>TTT	p.F599F	RAD54B_uc010may.1_Silent_p.F406F|RAD54B_uc003ygl.1_RNA	NM_012415	NP_036547	O95073	FSBP_HUMAN	RAD54 homolog B	Error:Variant_position_missing_in_O95073_after_alignment					double-strand break repair via homologous recombination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA translocase activity|protein binding			kidney(2)|lung(1)|skin(1)	4	Breast(36;4.5e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00217)			TTATAGAGTTGAACAAAAGGC	0.408								Direct_reversal_of_damage|Homologous_recombination					58	136					0	0	1	0	0
RAD54B	25788	broad.mit.edu	37	8	95423541	95423541	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95423541G>A	uc003ygk.2	-	4	405	c.307C>T	c.(307-309)CAT>TAT	p.H103Y	RAD54B_uc010may.1_5'UTR|RAD54B_uc003ygl.1_RNA	NM_012415	NP_036547	O95073	FSBP_HUMAN	RAD54 homolog B	Error:Variant_position_missing_in_O95073_after_alignment					double-strand break repair via homologous recombination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA translocase activity|protein binding			kidney(2)|lung(1)|skin(1)	4	Breast(36;4.5e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00217)			GGAGCCGAATGAACTACAATT	0.313								Direct_reversal_of_damage|Homologous_recombination					26	39					0	0	1	0	0
KIAA1429	25962	broad.mit.edu	37	8	95500992	95500992	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95500992C>T	uc003ygo.1	-	24	5394	c.5381G>A	c.(5380-5382)GGA>GAA	p.G1794E	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1794					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			AACAAACTTTCCTCTTGAGCC	0.498													67	174					0	0	1	0	0
ESRP1	54845	broad.mit.edu	37	8	95676990	95676990	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95676990C>T	uc003ygq.3	+	7	893	c.710C>T	c.(709-711)TCA>TTA	p.S237L	ESRP1_uc003ygr.3_Missense_Mutation_p.S237L|ESRP1_uc003ygs.3_Missense_Mutation_p.S237L|ESRP1_uc003ygt.3_Missense_Mutation_p.S237L|ESRP1_uc003ygu.3_Missense_Mutation_p.S237L|ESRP1_uc003ygv.2_Missense_Mutation_p.S77L|ESRP1_uc003ygw.2_Missense_Mutation_p.S77L	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	237	RRM 1.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TGGCAGTCTTCAGATCAAGAT	0.373													19	65					0	0	1	0	0
ESRP1	54845	broad.mit.edu	37	8	95680211	95680211	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95680211G>A	uc003ygq.3	+	10	1149	c.966G>A	c.(964-966)AAG>AAA	p.K322K	ESRP1_uc003ygr.3_Silent_p.K322K|ESRP1_uc003ygs.3_Silent_p.K322K|ESRP1_uc003ygt.3_Silent_p.K322K|ESRP1_uc003ygu.3_Silent_p.K322K|ESRP1_uc003ygv.2_Silent_p.K162K|ESRP1_uc003ygw.2_Silent_p.K162K	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	322					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TTCTCTCCAAGGAAAATCAAG	0.463													16	43					0	0	1	0	0
ESRP1	54845	broad.mit.edu	37	8	95680230	95680230	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95680230C>T	uc003ygq.3	+	10	1168	c.985C>T	c.(985-987)CGC>TGC	p.R329C	ESRP1_uc003ygr.3_Missense_Mutation_p.R329C|ESRP1_uc003ygs.3_Missense_Mutation_p.R329C|ESRP1_uc003ygt.3_Missense_Mutation_p.R329C|ESRP1_uc003ygu.3_Missense_Mutation_p.R329C|ESRP1_uc003ygv.2_Missense_Mutation_p.R169C|ESRP1_uc003ygw.2_Missense_Mutation_p.R169C	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	329	RRM 2.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						AGTCATTGTCCGCATGCGGGG	0.483													14	49					0	0	1	0	0
ESRP1	54845	broad.mit.edu	37	8	95683710	95683710	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95683710C>T	uc003ygq.3	+	11	1446	c.1263C>T	c.(1261-1263)CTC>CTT	p.L421L	ESRP1_uc003ygr.3_Silent_p.L421L|ESRP1_uc003ygs.3_Silent_p.L421L|ESRP1_uc003ygt.3_Silent_p.L421L|ESRP1_uc003ygu.3_Silent_p.L421L|ESRP1_uc003ygv.2_Silent_p.L261L|ESRP1_uc003ygw.2_Silent_p.L261L	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	421					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						CGGCCCCTCTCATTCCACTTC	0.453													16	82					0	0	1	0	0
DPY19L4	286148	broad.mit.edu	37	8	95777493	95777493	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:95777493C>T	uc003ygx.2	+	9	1077	c.953C>T	c.(952-954)TCT>TTT	p.S318F		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	318	Helical; (Potential).					integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					TTGTTGGTATCTCCTTTATTA	0.269													51	145					0	0	1	0	0
GDF6	392255	broad.mit.edu	37	8	97157007	97157007	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:97157007C>T	uc003yhp.2	-	2	1252	c.1152G>A	c.(1150-1152)GAG>GAA	p.E384E		NM_001001557	NP_001001557	Q6KF10	GDF6_HUMAN	growth differentiation factor 6 precursor	384					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(1)|breast(1)|pancreas(1)	3	Breast(36;2.67e-05)					CGCATACACCCTCGCAGTGAT	0.637													18	24					0	0	1	0	0
MTERFD1	51001	broad.mit.edu	37	8	97258141	97258141	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:97258141G>A	uc003yhs.1	-	6	922	c.844C>T	c.(844-846)CGT>TGT	p.R282C	MTERFD1_uc003yhr.1_Missense_Mutation_p.R161C|MTERFD1_uc010mbd.1_Missense_Mutation_p.R282C	NM_015942	NP_057026	Q96E29	MTER1_HUMAN	MTERF domain containing 1 precursor	282					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion	transcription regulatory region DNA binding			ovary(1)	1	Breast(36;5.16e-05)					CTTGGGAGACGAACTACCAGA	0.363													25	88					0	0	1	0	0
TSPYL5	85453	broad.mit.edu	37	8	98288962	98288962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:98288962C>T	uc003yhy.2	-	1	1215	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	371					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					CACAATTCTTCGTTGATTATC	0.468													63	216					0	0	1	0	0
TSPYL5	85453	broad.mit.edu	37	8	98288972	98288972	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:98288972C>T	uc003yhy.2	-	1	1205	c.1101G>A	c.(1099-1101)GAG>GAA	p.E367E		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	367					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					CGTTGATTATCTCCACAATCT	0.463													57	207					0	0	1	0	0
TSPYL5	85453	broad.mit.edu	37	8	98289598	98289599	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:98289598_98289599CC>TT	uc003yhy.2	-	1	578_579	c.474_475GG>AA	c.(472-477)AGGGGG>AGAAGG	p.G159R		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	159					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					ACCTGAGGCCCCCTCCCCGCGG	0.644													48	112					0	0	1	0	0
LAPTM4B	55353	broad.mit.edu	37	8	98837319	98837319	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:98837319C>T	uc003yia.2	+	6	970	c.814C>T	c.(814-816)CGA>TGA	p.R272*	LAPTM4B_uc010mbg.2_Intron	NM_018407	NP_060877	Q86VI4	LAP4B_HUMAN	lysosomal associated transmembrane protein 4	325					transport	endomembrane system|integral to membrane	protein binding			skin(1)	1	Breast(36;1.59e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.149)			GAACTGCTACCGATACATCAA	0.403													9	88					0	0	1	0	0
MATN2	4147	broad.mit.edu	37	8	99039822	99039822	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:99039822C>T	uc003yic.2	+	14	2352	c.2121C>T	c.(2119-2121)TTC>TTT	p.F707F	MATN2_uc010mbh.1_Silent_p.F666F|MATN2_uc003yid.2_Silent_p.F707F|MATN2_uc003yie.1_Silent_p.F707F|MATN2_uc010mbi.1_Silent_p.F540F|MATN2_uc010mbj.1_Intron|RPL30_uc010mbk.1_Intron	NM_002380	NP_002371	O00339	MATN2_HUMAN	matrilin 2 isoform a precursor	707	VWFA 2.					proteinaceous extracellular matrix	calcium ion binding			ovary(2)	2	Breast(36;1.43e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.244)			ACACAGAGTTCACTCTGAGAA	0.488													10	51					0	0	1	0	0
C8orf47	203111	broad.mit.edu	37	8	99101478	99101478	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:99101478C>T	uc003yih.1	+	2	381	c.233C>T	c.(232-234)CCC>CTC	p.P78L		NM_173549	NP_775820	Q6P6B1	CH047_HUMAN	hypothetical protein LOC203111	78											0	Breast(36;2.31e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			GGTGTTAAACCCCTCCAAGAA	0.527													30	113					0	0	1	0	0
C8orf47	203111	broad.mit.edu	37	8	99101746	99101747	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:99101746_99101747GG>AA	uc003yih.1	+	2	649_650	c.501_502GG>AA	c.(499-504)AAGGAC>AAAAAC	p.D168N		NM_173549	NP_775820	Q6P6B1	CH047_HUMAN	hypothetical protein LOC203111	168											0	Breast(36;2.31e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			CAGTAGAGAAGGACTCTCTCAG	0.52													4	48					0	0	1	0	0
KCNS2	3788	broad.mit.edu	37	8	99441317	99441317	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:99441317C>T	uc003yin.2	+	2	1460	c.1110C>T	c.(1108-1110)GTC>GTT	p.V370V		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	370						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			GGGCTACCGTCAGTATGACCA	0.617													23	51					0	0	1	0	0
KCNS2	3788	broad.mit.edu	37	8	99441587	99441587	+	Silent	SNP	G	A	A	rs141454693	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:99441587G>A	uc003yin.2	+	2	1730	c.1380G>A	c.(1378-1380)ACG>ACA	p.T460T		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	460	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			CAAGCCTGACGAACATGAGCA	0.493													40	82					0	0	1	0	0
KCNS2	3788	broad.mit.edu	37	8	99441632	99441632	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:99441632C>T	uc003yin.2	+	2	1775	c.1425C>T	c.(1423-1425)TCC>TCT	p.S475S		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	475	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			TAAATGATTCCCTACGTTAGC	0.493													15	55					0	0	1	0	0
OSR2	116039	broad.mit.edu	37	8	99961684	99961684	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:99961684G>A	uc003yir.2	+	2	1039	c.504G>A	c.(502-504)ACG>ACA	p.T168T	OSR2_uc010mbn.2_Silent_p.T168T|OSR2_uc003yiq.2_Silent_p.T168T|OSR2_uc011lgx.1_Silent_p.T289T	NM_001142462	NP_001135934	Q8N2R0	OSR2_HUMAN	odd-skipped related 2 isoform a	168					bone morphogenesis|chondrocyte differentiation|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic leg joint morphogenesis|embryonic skeletal joint morphogenesis|eyelid development in camera-type eye|head development|mesonephros development|metanephros development|middle ear morphogenesis|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|osteoblast proliferation|palate development|positive regulation of bone mineralization|positive regulation of epithelial cell proliferation|positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|zinc ion binding			central_nervous_system(1)	1	Breast(36;4.14e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.0136)			CCTCCAAAACGAAAAAAGAGT	0.522													73	232					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100127991	100127991	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:100127991C>T	uc003yiv.2	+	7	937	c.826C>T	c.(826-828)CGT>TGT	p.R276C	VPS13B_uc003yiw.2_Missense_Mutation_p.R276C|VPS13B_uc003yit.2_Missense_Mutation_p.R276C|VPS13B_uc003yiu.1_Missense_Mutation_p.R276C|VPS13B_uc003yis.2_Missense_Mutation_p.R276C|VPS13B_uc011lgy.1_Missense_Mutation_p.R152C	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	276					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TATGTTTATTCGTATAATGCA	0.333													10	93					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100523597	100523597	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:100523597C>T	uc003yiv.2	+	29	4676	c.4565C>T	c.(4564-4566)ACC>ATC	p.T1522I	VPS13B_uc003yiw.2_Missense_Mutation_p.T1497I|VPS13B_uc003yix.1_Missense_Mutation_p.T992I	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1522					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CTACCAAAGACCCAAAAAGAG	0.358													15	48					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100796698	100796699	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:100796698_100796699CC>TT	uc003yiv.2	+	43	8121_8122	c.8010_8011CC>TT	c.(8008-8013)TCCCCA>TCTTCA	p.P2671S	VPS13B_uc003yiw.2_Missense_Mutation_p.P2646S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2671					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CTCACAAATCCCCACAGGTATT	0.47													25	105					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100821706	100821706	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:100821706G>A	uc003yiv.2	+	44	8231	c.8120G>A	c.(8119-8121)CGA>CAA	p.R2707Q	VPS13B_uc003yiw.2_Missense_Mutation_p.R2682Q	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2707					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TACAGGGGTCGAACTGCTTCT	0.438													37	59					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100831085	100831085	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:100831085G>A	uc003yiv.2	+	47	8776	c.8665G>A	c.(8665-8667)GAC>AAC	p.D2889N	VPS13B_uc003yiw.2_Missense_Mutation_p.D2864N	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2889					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CATAGAACCTGACCTTGTACA	0.378													23	72					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101016248	101016248	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101016248G>A	uc003yjb.1	-	17	2728	c.2533C>T	c.(2533-2535)CCT>TCT	p.P845S	RGS22_uc003yja.1_Missense_Mutation_p.P664S|RGS22_uc003yjc.1_Missense_Mutation_p.P833S|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	845					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			TATTCTGCAGGAACATTATCC	0.373													22	60					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101018320	101018320	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101018320T>A	uc003yjb.1	-	16	2574	c.2379A>T	c.(2377-2379)GAA>GAT	p.E793D	RGS22_uc003yja.1_Missense_Mutation_p.E612D|RGS22_uc003yjc.1_Missense_Mutation_p.E781D|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	793					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			ACTGTCGAGTTTCTTCCACCA	0.373													18	47					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101051255	101051255	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101051255C>T	uc003yjb.1	-	14	2265	c.2070G>A	c.(2068-2070)TGG>TGA	p.W690*	RGS22_uc003yja.1_Nonsense_Mutation_p.W509*|RGS22_uc003yjc.1_Nonsense_Mutation_p.W678*|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	690					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CACTGTTCTTCCACAACTACA	0.353													13	37					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101092443	101092443	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101092443C>T	uc003yjb.1	-	4	453	c.258G>A	c.(256-258)AGG>AGA	p.R86R	RGS22_uc003yja.1_5'UTR|RGS22_uc003yjc.1_Silent_p.R86R|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	86				Missing (in Ref. 1; AAH92411).	negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			TCTTTCCTTTCCTTACAACAT	0.338													35	74					0	0	1	0	0
FBXO43	286151	broad.mit.edu	37	8	101153442	101153442	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101153442G>A	uc003yjd.2	-	2	1753	c.1040C>T	c.(1039-1041)TCC>TTC	p.S347F	FBXO43_uc003yje.2_Missense_Mutation_p.S313F|FBXO43_uc010mbp.1_Missense_Mutation_p.S347F	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	347					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			GTCAGACAGGGAATCTTCTGA	0.443													40	91					0	0	1	0	0
SPAG1	6674	broad.mit.edu	37	8	101178079	101178079	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101178079T>A	uc003yjh.1	+	3	264	c.178T>A	c.(178-180)TTT>ATT	p.F60I	SPAG1_uc003yjg.1_Missense_Mutation_p.F60I|SPAG1_uc003yji.1_Missense_Mutation_p.F60I	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	60					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		ACTTACAGAATTTTGTGAAAA	0.398													20	69					0	0	1	0	0
SPAG1	6674	broad.mit.edu	37	8	101206358	101206358	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101206358G>A	uc003yjh.1	+	10	1044	c.958G>A	c.(958-960)GAA>AAA	p.E320K	SPAG1_uc003yjg.1_Missense_Mutation_p.E320K|SPAG1_uc003yji.1_Missense_Mutation_p.E320K	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	320					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		GTCAGAGGTTGAAAGAGATCT	0.313													11	52					0	0	1	0	0
RNF19A	25897	broad.mit.edu	37	8	101276378	101276378	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101276378G>A	uc003yjj.1	-	8	1669	c.1352C>T	c.(1351-1353)CCA>CTA	p.P451L	RNF19A_uc003yjk.1_Missense_Mutation_p.P451L	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	451					microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			AAGAGAAATTGGAACTACGCC	0.363													29	31					0	0	1	0	0
SNX31	169166	broad.mit.edu	37	8	101608912	101608912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101608912G>A	uc003yjr.2	-	10	1084	c.933C>T	c.(931-933)ATC>ATT	p.I311I	SNX31_uc011lha.1_Silent_p.I106I|SNX31_uc011lhb.1_Silent_p.I212I	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	311					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			TCTGGAAAACGATGTCCTGGG	0.507													21	79					0	0	1	0	0
SNX31	169166	broad.mit.edu	37	8	101609053	101609053	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101609053C>T	uc003yjr.2	-	10	943	c.792G>A	c.(790-792)CGG>CGA	p.R264R	SNX31_uc011lha.1_Silent_p.R59R|SNX31_uc011lhb.1_Silent_p.R165R	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	264					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			GCCGTACCTCCCGGGCCAGCT	0.512													31	83					0	0	1	0	0
SNX31	169166	broad.mit.edu	37	8	101624234	101624234	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101624234C>T	uc003yjr.2	-	7	756	c.605G>A	c.(604-606)CGA>CAA	p.R202Q	SNX31_uc011lha.1_5'UTR|SNX31_uc011lhb.1_Missense_Mutation_p.R103Q	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	202					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			TTACCACTTTCGGAGTCCAAC	0.468													16	75					0	0	1	0	0
PABPC1	26986	broad.mit.edu	37	8	101718929	101718929	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:101718929G>A	uc003yjs.1	-	11	2056	c.1552C>T	c.(1552-1554)CGC>TGC	p.R518C	PABPC1_uc011lhc.1_Missense_Mutation_p.R486C|PABPC1_uc011lhd.1_Missense_Mutation_p.R473C|PABPC1_uc003yjt.1_Missense_Mutation_p.R515C|PABPC1_uc003yju.2_Intron	NM_002568	NP_002559	P11940	PABP1_HUMAN	poly(A) binding protein, cytoplasmic 1	518					mRNA polyadenylation|mRNA stabilization|negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|translation	catalytic step 2 spliceosome|cytosol	nucleotide binding|poly(A) RNA binding|protein C-terminus binding|translation activator activity				0	all_cancers(14;6.8e-05)|all_epithelial(15;3.16e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;6.37e-11)|all cancers(13;1.11e-08)|OV - Ovarian serous cystadenocarcinoma(57;3.91e-05)|STAD - Stomach adenocarcinoma(118;0.206)			TGAGGATTGCGAACTCCTGCA	0.453													36	74					0	0	1	0	0
NACAP1	83955	broad.mit.edu	37	8	102381246	102381246	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:102381246G>A	uc003ykc.1	+	1	126	c.109G>A	c.(109-111)GAG>AAG	p.E37K	NACAP1_uc010mbs.1_RNA	NR_002182				SubName: Full=NACAP1 protein;												0						GTCAGTACCAGAGCTTGAAGA	0.517													7	88					0	0	1	0	0
GRHL2	79977	broad.mit.edu	37	8	102585936	102585936	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:102585936C>T	uc010mbu.2	+	6	1105	c.775C>T	c.(775-777)CGT>TGT	p.R259C	GRHL2_uc011lhi.1_Missense_Mutation_p.R259C	NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	259						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			CAAATCTCTCCGTCAGAAGCA	0.507													15	43					0	0	1	0	0
GRHL2	79977	broad.mit.edu	37	8	102589725	102589725	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:102589725G>A	uc010mbu.2	+	7	1311	c.981G>A	c.(979-981)GCG>GCA	p.A327A		NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	327						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			AGCATACGGCGAAGCAGAGGG	0.498													5	40					0	0	1	0	0
GRHL2	79977	broad.mit.edu	37	8	102611376	102611376	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:102611376G>A	uc010mbu.2	+	8	1425	c.1095G>A	c.(1093-1095)GCG>GCA	p.A365A		NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	365						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			ATGAAGAGGCGAAGGTGAGTG	0.378													15	26					0	0	1	0	0
NCALD	83988	broad.mit.edu	37	8	102731543	102731543	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:102731543G>A	uc003yke.2	-	2	684	c.315C>T	c.(313-315)TTC>TTT	p.F105F	NCALD_uc003ykf.2_Silent_p.F105F|NCALD_uc003ykg.2_Silent_p.F105F|NCALD_uc003ykh.2_Silent_p.F105F|NCALD_uc003yki.2_Silent_p.F105F|NCALD_uc003ykj.2_Silent_p.F105F|NCALD_uc003ykk.2_Silent_p.F105F|NCALD_uc003ykl.2_Silent_p.F105F	NM_032041	NP_114430	P61601	NCALD_HUMAN	neurocalcin delta	105	EF-hand 3.				synaptic transmission|vesicle-mediated transport	clathrin coat of trans-Golgi network vesicle|cytosol	actin binding|calcium ion binding|clathrin binding|tubulin binding				0	all_cancers(14;8.94e-08)|all_epithelial(15;7.03e-10)|Lung NSC(17;1.36e-05)|all_lung(17;2.7e-05)		all cancers(13;1.09e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000699)			CGTACATGCTGAAGGCCCATT	0.478													47	134					0	0	1	0	0
UBR5	51366	broad.mit.edu	37	8	103307750	103307750	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:103307750G>A	uc003ykr.1	-	30	3856	c.3823C>T	c.(3823-3825)CTC>TTC	p.L1275F	UBR5_uc003yks.1_Missense_Mutation_p.L1275F	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1275					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			AATAGTAAGAGGTGCTCTCCC	0.473													37	74					0	0	1	0	0
ODF1	4956	broad.mit.edu	37	8	103564014	103564014	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:103564014G>A	uc003ykt.2	+	1	167	c.59G>A	c.(58-60)AGA>AAA	p.R20K		NM_024410	NP_077721	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	20					cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			ovary(2)	2	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			AAGGTGGACAGAGAACTAAGG	0.483													14	119					0	0	1	0	0
ODF1	4956	broad.mit.edu	37	8	103564043	103564043	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:103564043G>A	uc003ykt.2	+	1	196	c.88G>A	c.(88-90)GAA>AAA	p.E30K		NM_024410	NP_077721	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	30					cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			ovary(2)	2	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			ATGCATCGACGAATTTAGCAC	0.493													53	143					0	0	1	0	0
FZD6	8323	broad.mit.edu	37	8	104337524	104337524	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:104337524G>A	uc003ylh.2	+	4	1474	c.1190G>A	c.(1189-1191)CGA>CAA	p.R397Q	FZD6_uc003yli.2_Missense_Mutation_p.R397Q|FZD6_uc003ylj.2_Missense_Mutation_p.R397Q|FZD6_uc011lhn.1_Missense_Mutation_p.R363Q|FZD6_uc011lho.1_Missense_Mutation_p.R92Q|FZD6_uc011lhp.1_Missense_Mutation_p.R342Q	NM_003506	NP_003497	O60353	FZD6_HUMAN	frizzled 6 isoform a precursor	397	Cytoplasmic (Potential).				angiogenesis|axonogenesis|cell proliferation in midbrain|establishment of planar polarity|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|inner ear morphogenesis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|neural tube closure|non-canonical Wnt receptor signaling pathway	apical part of cell|apicolateral plasma membrane|cytoplasm|integral to plasma membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.86e-05)|STAD - Stomach adenocarcinoma(118;0.197)			AATCATGTTCGACAAGTCATA	0.413													77	208					0	0	1	0	0
SLC25A32	81034	broad.mit.edu	37	8	104412716	104412716	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:104412716G>A	uc003yll.2	-	7	1174	c.871C>T	c.(871-873)CCA>TCA	p.P291S	SLC25A32_uc011lhr.1_Missense_Mutation_p.P159S	NM_030780	NP_110407	Q9H2D1	MFTC_HUMAN	solute carrier family 25, member 32	291	Solcar 3.|Helical; Name=6; (Potential).				folic acid metabolic process|mitochondrial transport	integral to membrane|mitochondrial inner membrane	binding|folic acid transporter activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(57;2.79e-06)|STAD - Stomach adenocarcinoma(118;0.197)		Folic Acid(DB00158)	CAGCAGGCTGGAGTCACTCTA	0.368													13	140					0	0	1	0	0
DCAF13	25879	broad.mit.edu	37	8	104432603	104432603	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:104432603C>T	uc003yln.2	+	2	915	c.638C>T	c.(637-639)TCG>TTG	p.S213L	DCAF13_uc003ylm.1_Intron|DCAF13_uc003ylo.2_5'UTR	NM_015420	NP_056235	Q9NV06	DCA13_HUMAN	WD repeats and SOF1 domain containing	61					rRNA processing	CUL4 RING ubiquitin ligase complex|nucleolus|ribonucleoprotein complex				breast(1)	1						TTCCTTGCTTCGCTGGATGGT	0.458													23	45					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	104709366	104709366	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:104709366G>A	uc003ylp.2	+	2	368	c.229G>A	c.(229-231)GAA>AAA	p.E77K		NM_001100117	NP_001093587	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	108	RabBD.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GAAGATGGGAGAAGAATCACA	0.403										HNSCC(12;0.0054)			21	58					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	104778670	104778670	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:104778670G>A	uc003ylp.2	+	3	742	c.603G>A	c.(601-603)GTG>GTA	p.V201V		NM_001100117	NP_001093587	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	232					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TACCTGCAGTGGAGAAAAGTC	0.473										HNSCC(12;0.0054)			14	61					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	104898241	104898241	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:104898241G>A	uc003yls.2	+	2	989	c.748G>A	c.(748-750)GAA>AAA	p.E250K	RIMS2_uc003ylp.2_Missense_Mutation_p.E472K|RIMS2_uc003ylw.2_Missense_Mutation_p.E280K|RIMS2_uc003ylq.2_Missense_Mutation_p.E280K|RIMS2_uc003ylr.2_Missense_Mutation_p.E280K	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	503					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AACAAAACGGGAAAAAATGGA	0.448										HNSCC(12;0.0054)			14	45					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	104948865	104948865	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:104948865G>A	uc003yls.2	+	11	2037	c.1796G>A	c.(1795-1797)CGA>CAA	p.R599Q	RIMS2_uc003ylp.2_Missense_Mutation_p.R821Q|RIMS2_uc003ylw.2_Missense_Mutation_p.R613Q|RIMS2_uc003ylq.2_Missense_Mutation_p.R613Q|RIMS2_uc003ylr.2_Missense_Mutation_p.R660Q|RIMS2_uc003ylt.2_Missense_Mutation_p.R206Q	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	883	C2 1.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CCAGTCCACCGAAGAGAATTT	0.388										HNSCC(12;0.0054)			36	123					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	105010414	105010414	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:105010414C>T	uc003yls.2	+	16	2621	c.2380C>T	c.(2380-2382)CAT>TAT	p.H794Y	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Missense_Mutation_p.H808Y|RIMS2_uc003ylq.2_Missense_Mutation_p.H808Y|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TGCTTGCAGTCATTTTCTTAC	0.338										HNSCC(12;0.0054)			39	74					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	105026744	105026744	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:105026744C>T	uc003yls.2	+	17	2696	c.2455C>T	c.(2455-2457)CGT>TGT	p.R819C	RIMS2_uc003ylp.2_Missense_Mutation_p.R1079C|RIMS2_uc003ylw.2_Missense_Mutation_p.R893C|RIMS2_uc003ylq.2_Missense_Mutation_p.R893C|RIMS2_uc003ylr.2_Missense_Mutation_p.R918C	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1141					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GTCTCATCCTCGTACTGGGTC	0.418										HNSCC(12;0.0054)			12	49					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	105105720	105105720	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:105105720C>T	uc003yls.2	+	21	2984	c.2743C>T	c.(2743-2745)CAT>TAT	p.H915Y	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Missense_Mutation_p.H988Y|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			ATGGGATCCTCATAGAGGGGC	0.398										HNSCC(12;0.0054)			41	98					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	105161027	105161027	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:105161027C>T	uc003yls.2	+	23	3580	c.3339C>T	c.(3337-3339)ATC>ATT	p.I1113I	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Silent_p.I1102I|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	541					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TGGTAGCTATCGTTGGTCTGT	0.483										HNSCC(12;0.0054)			25	56					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	105261008	105261008	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:105261008G>A	uc003yls.2	+	25	3851	c.3610G>A	c.(3610-3612)GTG>ATG	p.V1204M	RIMS2_uc003ylp.2_Missense_Mutation_p.V1186M|RIMS2_uc003ylw.2_Missense_Mutation_p.V1193M|RIMS2_uc003ylq.2_Missense_Mutation_p.V1000M|RIMS2_uc003ylr.2_Missense_Mutation_p.V1025M	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1248					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TGCTCAGCTAGTGGGACGCCA	0.428										HNSCC(12;0.0054)			21	52					0	0	1	0	0
TM7SF4	81501	broad.mit.edu	37	8	105367139	105367139	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:105367139C>T	uc003ylx.1	+	3	1113	c.1064C>T	c.(1063-1065)TCC>TTC	p.S355F		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	355					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CATGATTCTTCCTTTAATATA	0.333													16	44					0	0	1	0	0
DPYS	1807	broad.mit.edu	37	8	105459626	105459626	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:105459626C>T	uc003yly.3	-	3	658	c.529G>A	c.(529-531)GAA>AAA	p.E177K		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	177					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GAGAAGGCTTCGTACAGCTCC	0.428													16	65					0	0	1	0	0
LRP12	29967	broad.mit.edu	37	8	105509965	105509965	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:105509965G>A	uc003yma.2	-	5	910	c.815C>T	c.(814-816)TCT>TTT	p.S272F	LRP12_uc003ymb.2_Missense_Mutation_p.S253F|LRP12_uc003ylz.2_5'Flank	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	272	Extracellular (Potential).|CUB 2.				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			ATAATTGGGAGAATTAAAAGT	0.398													26	53					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106431439	106431439	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106431439C>T	uc003ymd.2	+	2	131	c.108C>T	c.(106-108)TCC>TCT	p.S36S		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	36					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			ACATCATCTCCAAAGGAGACT	0.408													12	58					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106431506	106431506	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106431506G>A	uc003ymd.2	+	2	198	c.175G>A	c.(175-177)GAA>AAA	p.E59K		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	59					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GAGCTGCGAAGAAGTGGAATA	0.358													24	90					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106456510	106456510	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106456510G>A	uc003ymd.2	+	3	225	c.202G>A	c.(202-204)GAT>AAT	p.D68N		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	68					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TTTTCCAGGTGATGATGAAGG	0.463													6	16					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813462	106813462	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106813462C>T	uc003ymd.2	+	8	1175	c.1152C>T	c.(1150-1152)CTC>CTT	p.L384L	ZFPM2_uc011lhs.1_Silent_p.L115L|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	384	C2H2-type 3.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			ACCAGGAGCTCCATGTCCCTA	0.507													25	141					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813468	106813469	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106813468_106813469CC>TT	uc003ymd.2	+	8	1181_1182	c.1158_1159CC>TT	c.(1156-1161)GTCCCT>GTTTCT	p.P387S	ZFPM2_uc011lhs.1_Missense_Mutation_p.P118S|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	387					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AGCTCCATGTCCCTAGCGGCAA	0.51													60	99					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813932	106813932	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106813932G>A	uc003ymd.2	+	8	1645	c.1622G>A	c.(1621-1623)AGC>AAC	p.S541N	ZFPM2_uc011lhs.1_Missense_Mutation_p.S272N	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	541					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GTCATTTACAGCCCTTTGATG	0.453													53	95					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814304	106814304	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106814304G>A	uc003ymd.2	+	8	2017	c.1994G>A	c.(1993-1995)GGA>GAA	p.G665E	ZFPM2_uc011lhs.1_Missense_Mutation_p.G396E	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	665					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AAAATTAATGGAAAACCTGTT	0.433													8	30					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814408	106814408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106814408G>A	uc003ymd.2	+	8	2121	c.2098G>A	c.(2098-2100)GAA>AAA	p.E700K	ZFPM2_uc011lhs.1_Missense_Mutation_p.E431K	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	700	C2HC-type 3.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CAGCCGGCACGAAACATACAT	0.488													13	27					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814675	106814675	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106814675G>A	uc003ymd.2	+	8	2388	c.2365G>A	c.(2365-2367)GAT>AAT	p.D789N	ZFPM2_uc011lhs.1_Missense_Mutation_p.D520N	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	789					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CCCAAGATGTGATATCTTTCC	0.438													12	26					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815131	106815131	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106815131G>A	uc003ymd.2	+	8	2844	c.2821G>A	c.(2821-2823)GGC>AGC	p.G941S	ZFPM2_uc011lhs.1_Missense_Mutation_p.G672S	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	941					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AACCCTGCAAGGCTTGAAGGT	0.408													10	28					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815176	106815176	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106815176G>A	uc003ymd.2	+	8	2889	c.2866G>A	c.(2866-2868)GAA>AAA	p.E956K	ZFPM2_uc011lhs.1_Missense_Mutation_p.E687K	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	956					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TGCTACAAAAGAAGAAAACAG	0.443													5	21					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815429	106815429	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106815429G>A	uc003ymd.2	+	8	3142	c.3119G>A	c.(3118-3120)GGA>GAA	p.G1040E	ZFPM2_uc011lhs.1_Missense_Mutation_p.G771E	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1040					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AAAAATCGAGGAATGGTAATA	0.473													7	47					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815501	106815501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:106815501C>T	uc003ymd.2	+	8	3214	c.3191C>T	c.(3190-3192)TCC>TTC	p.S1064F	ZFPM2_uc011lhs.1_Missense_Mutation_p.S795F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1064					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GAGAACATTTCCCAGAATCCT	0.483													8	27					0	0	1	0	0
ABRA	137735	broad.mit.edu	37	8	107773266	107773266	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:107773266C>T	uc003ymm.3	-	2	1199	c.1145G>A	c.(1144-1146)TGA>TAA	p.*382*		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	382					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			TTTGAAGGTTCACTTGAGTAG	0.413													74	161					0	0	1	0	0
ABRA	137735	broad.mit.edu	37	8	107782025	107782025	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:107782025C>T	uc003ymm.3	-	1	448	c.394G>A	c.(394-396)GAG>AAG	p.E132K		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	132					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			GCATCCCTCTCGTACCTGTGG	0.542													41	87					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108297011	108297011	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:108297011C>T	uc003ymn.2	-	7	1572	c.1104G>A	c.(1102-1104)CAG>CAA	p.Q368Q	ANGPT1_uc011lhv.1_Silent_p.Q168Q|ANGPT1_uc003ymo.2_Silent_p.Q367Q|ANGPT1_uc003ymp.3_Silent_p.Q167Q	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	368	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			TGTACTGCCTCTGACTGGTAA	0.403													16	53					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108315553	108315553	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:108315553C>T	uc003ymn.2	-	5	1319	c.851G>A	c.(850-852)AGA>AAA	p.R284K	ANGPT1_uc011lhv.1_Missense_Mutation_p.R84K|ANGPT1_uc003ymo.2_Missense_Mutation_p.R283K|ANGPT1_uc003ymp.3_Missense_Mutation_p.R83K	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	284	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			TGCACAGTCTCTAAATGGTTT	0.313													33	71					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108348406	108348406	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:108348406C>T	uc003ymn.2	-	3	1015	c.547G>A	c.(547-549)GAA>AAA	p.E183K	ANGPT1_uc011lhv.1_5'UTR|ANGPT1_uc003ymo.2_Missense_Mutation_p.E183K	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	183	Potential.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			TTCAAGATTTCATTTGTCTGT	0.363													7	33					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108359225	108359225	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:108359225C>T	uc003ymn.2	-	2	866	c.398G>A	c.(397-399)AGC>AAC	p.S133N	ANGPT1_uc003ymo.2_Missense_Mutation_p.S133N	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	133					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			AGAGAGGAGGCTGGTTCCTAT	0.498													39	88					0	0	1	0	0
RSPO2	340419	broad.mit.edu	37	8	108970464	108970464	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:108970464C>T	uc003yms.2	-	5	1118	c.460G>A	c.(460-462)GGA>AGA	p.G154R	RSPO2_uc003ymq.2_Missense_Mutation_p.G87R|RSPO2_uc003ymr.2_Missense_Mutation_p.G90R	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	154	TSP type-1.				Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			CTACAAGTTCCCCATTCGCTC	0.373													24	65					0	0	1	0	0
RSPO2	340419	broad.mit.edu	37	8	109001422	109001422	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:109001422C>T	uc003yms.2	-	3	803	c.145G>A	c.(145-147)GAC>AAC	p.D49N	RSPO2_uc003ymq.2_5'UTR|RSPO2_uc003ymr.2_Intron	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	49					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			CACCCATTGTCCTTTGAACAA	0.403													22	55					0	0	1	0	0
TTC35	9694	broad.mit.edu	37	8	109498750	109498750	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:109498750C>T	uc003ymw.1	+	11	852	c.817C>T	c.(817-819)CGA>TGA	p.R273*		NM_014673	NP_055488	Q15006	TTC35_HUMAN	tetratricopeptide repeat domain 35	273						endoplasmic reticulum|nucleus	binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.34e-10)			GTTTGCAGGTCGAAGTAAGAA	0.333													14	36					0	0	1	0	0
TMEM74	157753	broad.mit.edu	37	8	109797140	109797140	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:109797140G>A	uc003ymy.1	-	2	293	c.188C>T	c.(187-189)TCT>TTT	p.S63F	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	63					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			GGATGCTGGAGAAGAACTAAG	0.517													12	131					0	0	1	0	0
TMEM74	157753	broad.mit.edu	37	8	109797285	109797285	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:109797285G>A	uc003ymy.1	-	2	148	c.43C>T	c.(43-45)CTC>TTC	p.L15F	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	15					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			GCATCACAGAGGTCTGCCTGG	0.547													14	53					0	0	1	0	0
TRHR	7201	broad.mit.edu	37	8	110100010	110100010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110100010C>T	uc003ymz.3	+	1	285	c.269C>T	c.(268-270)TCC>TTC	p.S90F		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	90	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			ATCTACGGTTCCTGGGTCTAT	0.498													20	101					0	0	1	0	0
TRHR	7201	broad.mit.edu	37	8	110100085	110100085	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110100085C>T	uc003ymz.3	+	1	360	c.344C>T	c.(343-345)TCA>TTA	p.S115L		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	115	Helical; Name=3; (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			TCCTCTTGTTCAATAACAGCC	0.413													22	60					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110413787	110413787	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110413787C>T	uc003yne.2	+	14	1447	c.1343C>T	c.(1342-1344)TCA>TTA	p.S448L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	448	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ACACAAAGATCAGATGATATT	0.333										HNSCC(38;0.096)			8	37					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110420301	110420301	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110420301G>A	uc003yne.2	+	18	1941	c.1837G>A	c.(1837-1839)GAA>AAA	p.E613K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	613	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GCTTGGTTATGAAGTAGTTGA	0.323										HNSCC(38;0.096)			16	27					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110439312	110439312	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110439312G>A	uc003yne.2	+	25	3031	c.2927G>A	c.(2926-2928)CGA>CAA	p.R976Q		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	976	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TCAGTTACACGAGAGGGAACC	0.542										HNSCC(38;0.096)			11	62					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110439352	110439352	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110439352G>A	uc003yne.2	+	25	3071	c.2967G>A	c.(2965-2967)TGG>TGA	p.W989*		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	989	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ACATCAAATGGAGAAGCACCT	0.438										HNSCC(38;0.096)			15	32					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110439377	110439377	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110439377C>T	uc003yne.2	+	25	3096	c.2992C>T	c.(2992-2994)CTT>TTT	p.L998F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	998	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AAAGCAGAATCTTCTACAGGT	0.373										HNSCC(38;0.096)			12	20					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110441668	110441668	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110441668C>T	uc003yne.2	+	26	3204	c.3100C>T	c.(3100-3102)CGT>TGT	p.R1034C		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1034	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGACCTACTTCGTACACCCAG	0.343										HNSCC(38;0.096)			5	15					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110448612	110448612	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110448612C>T	uc003yne.2	+	30	3655	c.3551C>T	c.(3550-3552)TCA>TTA	p.S1184L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1184	Extracellular (Potential).|IPT/TIG 5.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AATGAAAATTCAAAGGTATTA	0.348										HNSCC(38;0.096)			21	51					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110452971	110452971	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110452971T>C	uc003yne.2	+	33	4093	c.3989T>C	c.(3988-3990)TTA>TCA	p.L1330S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1330	Extracellular (Potential).|IPT/TIG 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAGTATGTTTTAGAAGTGACC	0.363										HNSCC(38;0.096)			28	103					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110456078	110456078	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110456078G>A	uc003yne.2	+	37	4842	c.4738G>A	c.(4738-4740)GAA>AAA	p.E1580K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1580	Extracellular (Potential).|IPT/TIG 8.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AACAGTAAATGAACTAATAAC	0.328										HNSCC(38;0.096)			49	64					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457509	110457509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110457509C>T	uc003yne.2	+	38	5515	c.5411C>T	c.(5410-5412)CCT>CTT	p.P1804L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1804	Extracellular (Potential).|IPT/TIG 10.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTTGTGACTCCTCTCCCAGTT	0.463										HNSCC(38;0.096)			31	81					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110464387	110464387	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110464387G>A	uc003yne.2	+	42	6489	c.6385G>A	c.(6385-6387)GAA>AAA	p.E2129K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2129	IPT/TIG 14.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CACCATAGCTGAAGCCAAATG	0.398										HNSCC(38;0.096)			20	28					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110476877	110476877	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110476877G>A	uc003yne.2	+	49	7920	c.7816G>A	c.(7816-7818)GTT>ATT	p.V2606I		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2606	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TCAAAAAAGAGTTCCCCTTGG	0.438										HNSCC(38;0.096)			13	95					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477422	110477422	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110477422C>T	uc003yne.2	+	49	8465	c.8361C>T	c.(8359-8361)GGC>GGT	p.G2787G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2787	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ACAAGGCTGGCTTTCGCTGGG	0.398										HNSCC(38;0.096)			29	52					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477426	110477426	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110477426C>T	uc003yne.2	+	49	8469	c.8365C>T	c.(8365-8367)CGC>TGC	p.R2789C		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2789	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGCTGGCTTTCGCTGGGAACA	0.393										HNSCC(38;0.096)			27	49					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110478892	110478892	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110478892C>T	uc003yne.2	+	50	8603	c.8499C>T	c.(8497-8499)TTC>TTT	p.F2833F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2833	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GCATTGGGTTCCCTGGATCAG	0.478										HNSCC(38;0.096)			6	15					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110489536	110489536	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110489536C>T	uc003yne.2	+	53	9104	c.9000C>T	c.(8998-9000)TTC>TTT	p.F3000F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3000	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTATTAATTTCCAAGCTTACT	0.423										HNSCC(38;0.096)			16	55					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110489561	110489561	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110489561G>A	uc003yne.2	+	53	9129	c.9025G>A	c.(9025-9027)GAT>AAT	p.D3009N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3009	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TATTCTCCAGGATTGCTTTCC	0.408										HNSCC(38;0.096)			19	52					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110530483	110530483	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110530483G>A	uc003yne.2	+	73	11881	c.11777G>A	c.(11776-11778)GGA>GAA	p.G3926E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3926	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTGGTTAAAGGAACTATACCT	0.373										HNSCC(38;0.096)			30	55					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110535020	110535021	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110535020_110535021GG>AA	uc003yne.2	+	75	12335_12336	c.12231_12232GG>AA	c.(12229-12234)GTGGCC>GTAACC	p.A4078T		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	4078	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTCATCACGTGGCCTTCGTGTC	0.51										HNSCC(38;0.096)			11	29					0	0	1	0	0
KCNV1	27012	broad.mit.edu	37	8	110980464	110980464	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:110980464C>T	uc003ynr.3	-	3	1698	c.1356G>A	c.(1354-1356)AAG>AAA	p.K452K	KCNV1_uc010mcw.2_Silent_p.K452K	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	452	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			TGGTAAGCTTCTTTAGGGCTT	0.448													20	54					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113241079	113241079	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:113241079G>A	uc003ynu.2	-	70	11029	c.10870C>T	c.(10870-10872)CAT>TAT	p.H3624Y	CSMD3_uc003yns.2_Missense_Mutation_p.H2826Y|CSMD3_uc003ynt.2_Missense_Mutation_p.H3584Y|CSMD3_uc011lhx.1_Missense_Mutation_p.H3455Y	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3624	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTTGTACCATGAGGTTGATTT	0.279										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			29	60					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113275932	113275932	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:113275932G>A	uc003ynu.2	-	61	9957	c.9798C>T	c.(9796-9798)TCC>TCT	p.S3266S	CSMD3_uc003yns.2_Silent_p.S2468S|CSMD3_uc003ynt.2_Silent_p.S3226S|CSMD3_uc011lhx.1_Silent_p.S3097S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3266	Sushi 25.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CAGCAGGGAAGGATAGCTCAT	0.453										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			18	48					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113303820	113303820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:113303820G>A	uc003ynu.2	-	56	9052	c.8893C>T	c.(8893-8895)CCT>TCT	p.P2965S	CSMD3_uc003yns.2_Missense_Mutation_p.P2167S|CSMD3_uc003ynt.2_Missense_Mutation_p.P2925S|CSMD3_uc011lhx.1_Missense_Mutation_p.P2796S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2965	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AAATATCCAGGATTGCAGTCA	0.343										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			22	91					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113353798	113353798	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:113353798G>A	uc003ynu.2	-	42	6719	c.6560C>T	c.(6559-6561)CCA>CTA	p.P2187L	CSMD3_uc003yns.2_Missense_Mutation_p.P1389L|CSMD3_uc003ynt.2_Missense_Mutation_p.P2147L|CSMD3_uc011lhx.1_Missense_Mutation_p.P2083L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2187	Extracellular (Potential).|CUB 12.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TAAGGAAGATGGTATTTGAGG	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			24	70					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113418951	113418951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:113418951G>A	uc003ynu.2	-	35	5770	c.5611C>T	c.(5611-5613)CCT>TCT	p.P1871S	CSMD3_uc003yns.2_Missense_Mutation_p.P1073S|CSMD3_uc003ynt.2_Missense_Mutation_p.P1831S|CSMD3_uc011lhx.1_Missense_Mutation_p.P1767S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1871	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CTTGTTCTAGGAACAGCTGTG	0.318										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			41	56					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113421178	113421178	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:113421178G>A	uc003ynu.2	-	33	5638	c.5479C>T	c.(5479-5481)CTG>TTG	p.L1827L	CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Silent_p.L1787L|CSMD3_uc011lhx.1_Silent_p.L1723L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1827	Extracellular (Potential).|CUB 10.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GAAGATAACAGAGAAGATTGC	0.418										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			37	130					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113519003	113519003	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:113519003G>A	uc003ynu.2	-	29	4971	c.4812C>T	c.(4810-4812)TTC>TTT	p.F1604F	CSMD3_uc003yns.2_Silent_p.F876F|CSMD3_uc003ynt.2_Silent_p.F1564F|CSMD3_uc011lhx.1_Silent_p.F1500F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1604	Extracellular (Potential).|CUB 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATGGATGAGGGAAGTTTGGTG	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			15	70					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113649088	113649088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:113649088C>T	uc003ynu.2	-	22	3832	c.3673G>A	c.(3673-3675)GGT>AGT	p.G1225S	CSMD3_uc003yns.2_Missense_Mutation_p.G497S|CSMD3_uc003ynt.2_Missense_Mutation_p.G1185S|CSMD3_uc011lhx.1_Missense_Mutation_p.G1121S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1225	Sushi 6.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CGTCGGCCACCACCAAGACAG	0.507										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			23	65					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113933979	113933979	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:113933979G>A	uc003ynu.2	-	10	1669	c.1510C>T	c.(1510-1512)CTT>TTT	p.L504F	CSMD3_uc003ynt.2_Missense_Mutation_p.L464F|CSMD3_uc011lhx.1_Missense_Mutation_p.L400F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	504	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTTGATCCAAGGCTAAAGTTA	0.383										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			19	57					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114111003	114111003	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:114111003G>A	uc003ynu.2	-	5	1058	c.899C>T	c.(898-900)TCT>TTT	p.S300F	CSMD3_uc003ynt.2_Missense_Mutation_p.S260F|CSMD3_uc011lhx.1_Missense_Mutation_p.S300F|CSMD3_uc010mcx.1_Missense_Mutation_p.S300F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	300	Extracellular (Potential).|CUB 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGGTGGCTCAGAACCTTCTAT	0.363										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	43					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114111043	114111043	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:114111043G>A	uc003ynu.2	-	5	1018	c.859C>T	c.(859-861)CAA>TAA	p.Q287*	CSMD3_uc003ynt.2_Nonsense_Mutation_p.Q247*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.Q287*|CSMD3_uc010mcx.1_Nonsense_Mutation_p.Q287*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	287	Extracellular (Potential).|CUB 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCTTCCATTTGAAAATCAGTA	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			14	56					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114185980	114185980	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:114185980G>A	uc003ynu.2	-	4	839	c.680C>T	c.(679-681)TCG>TTG	p.S227L	CSMD3_uc003ynt.2_Missense_Mutation_p.S187L|CSMD3_uc011lhx.1_Missense_Mutation_p.S227L|CSMD3_uc010mcx.1_Missense_Mutation_p.S227L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	227	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AAAATCCCACGAAGCTGTATT	0.433										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			17	132					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114290845	114290845	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:114290845G>A	uc003ynu.2	-	3	649	c.490C>T	c.(490-492)CAT>TAT	p.H164Y	CSMD3_uc003ynt.2_Missense_Mutation_p.H124Y|CSMD3_uc011lhx.1_Missense_Mutation_p.H164Y|CSMD3_uc010mcx.1_Missense_Mutation_p.H164Y	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	164	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTAAATCCATGAGCACTAACT	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			21	74					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114290925	114290925	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:114290925C>T	uc003ynu.2	-	3	569	c.410G>A	c.(409-411)GGA>GAA	p.G137E	CSMD3_uc003ynt.2_Missense_Mutation_p.G97E|CSMD3_uc011lhx.1_Missense_Mutation_p.G137E|CSMD3_uc010mcx.1_Missense_Mutation_p.G137E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	137	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CAGATGGAATCCTGTTAACCT	0.308										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			17	67					0	0	1	0	0
TRPS1	7227	broad.mit.edu	37	8	116631459	116631459	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:116631459G>T	uc003ynz.2	-	2	1286	c.827C>A	c.(826-828)TCC>TAC	p.S276Y	TRPS1_uc011lhy.1_Missense_Mutation_p.S280Y|TRPS1_uc003yny.2_Missense_Mutation_p.S289Y|TRPS1_uc010mcy.2_Missense_Mutation_p.S276Y	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	276					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			GAAGTCTTTGGAATGGCTGAA	0.468									Langer-Giedion_syndrome				28	38					1.74197e-06	1.74516e-06	1	1	0
C8orf85	441376	broad.mit.edu	37	8	117950651	117950651	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:117950651G>A	uc003yof.2	+	1	188	c.169G>A	c.(169-171)GAG>AAG	p.E57K		NM_001025357	NP_001020528	Q4LEZ3	AARD_HUMAN	alanine and arginine-rich domain-containing	57											0						CCCGCTGCTGGAGGACCTCAG	0.632													7	20					0	0	1	0	0
C8orf85	441376	broad.mit.edu	37	8	117954928	117954928	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:117954928G>A	uc003yof.2	+	2	475	c.456G>A	c.(454-456)GCG>GCA	p.A152A		NM_001025357	NP_001020528	Q4LEZ3	AARD_HUMAN	alanine and arginine-rich domain-containing	152											0						ATGATGCTGCGAATCCGGAAT	0.264													19	67					0	0	1	0	0
SLC30A8	169026	broad.mit.edu	37	8	118147569	118147569	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:118147569G>A	uc003yoh.2	+	1	233	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SLC30A8_uc010mcz.2_Intron|SLC30A8_uc011lia.1_5'UTR|SLC30A8_uc003yog.2_5'UTR	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	1	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			TGGCCGTCATGGAGTTTCTTG	0.413													46	135					0	0	1	0	0
SLC30A8	169026	broad.mit.edu	37	8	118147626	118147626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:118147626C>T	uc003yoh.2	+	1	290	c.60C>T	c.(58-60)TTC>TTT	p.F20F	SLC30A8_uc010mcz.2_Intron|SLC30A8_uc011lia.1_5'UTR|SLC30A8_uc003yog.2_5'UTR	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	20	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			TGTATGCTTTCACACTAGAAA	0.403													40	152					0	0	1	0	0
SLC30A8	169026	broad.mit.edu	37	8	118165285	118165285	+	Missense_Mutation	SNP	C	T	T	rs148780595		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:118165285C>T	uc003yoh.2	+	3	604	c.374C>T	c.(373-375)TCG>TTG	p.S125L	SLC30A8_uc010mcz.2_Missense_Mutation_p.S76L|SLC30A8_uc011lia.1_Missense_Mutation_p.S76L|SLC30A8_uc003yog.2_Missense_Mutation_p.S76L	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	125	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			TGGTTGTCATCGAAGCCTCCC	0.527													15	36					0	0	1	0	0
EXT1	2131	broad.mit.edu	37	8	118819608	118819608	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:118819608G>A	uc003yok.1	-	9	2504	c.1731C>T	c.(1729-1731)TTC>TTT	p.F577F		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	577	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			CTGTGAAGGCGAAATCCACCT	0.483			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				15	48					0	0	1	0	0
SAMD12	401474	broad.mit.edu	37	8	119391794	119391794	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:119391794G>A	uc003yom.2	-	4	597	c.468C>T	c.(466-468)ACC>ACT	p.T156T	SAMD12_uc010mda.1_Intron|SAMD12_uc010mdb.1_Intron	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	156										ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			GAAGCAATAGGGTACCTTGTG	0.473													17	62					0	0	1	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119945434	119945434	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:119945434G>A	uc003yon.3	-	2	459	c.136C>T	c.(136-138)CCT>TCT	p.P46S	TNFRSF11B_uc010mdc.1_RNA	NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	46	TNFR-Cys 1.				apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			TAGGTACCAGGAGGACATTTG	0.498													57	235					0	0	1	0	0
COLEC10	10584	broad.mit.edu	37	8	120101930	120101930	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:120101930G>A	uc003yoo.2	+	2	257	c.160G>A	c.(160-162)GAA>AAA	p.E54K		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	54	Collagen-like.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			AGATGATGGTGAAAAAGGAGA	0.413													15	37					0	0	1	0	0
COLEC10	10584	broad.mit.edu	37	8	120103399	120103399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:120103399G>A	uc003yoo.2	+	3	329	c.232G>A	c.(232-234)GAA>AAA	p.E78K		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	78	Collagen-like.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			AATTAAAGGAGAACTGGGTGA	0.383													9	88					0	0	1	0	0
TAF2	6873	broad.mit.edu	37	8	120809247	120809247	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:120809247G>A	uc003you.2	-	8	1344	c.1074C>T	c.(1072-1074)TTC>TTT	p.F358F		NM_003184	NP_003175	Q6P1X5	TAF2_HUMAN	TBP-associated factor 2	358					G2/M transition of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor TFIID complex|transcription factor TFTC complex	metallopeptidase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(2)|ovary(2)|kidney(1)|skin(1)	6	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			TTCTAGATATGAAACAACCAA	0.383													21	63					0	0	1	0	0
DEPDC6	64798	broad.mit.edu	37	8	121013894	121013894	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121013894C>T	uc003yow.3	+	5	922	c.735C>T	c.(733-735)CCC>CCT	p.P245P	DEPDC6_uc011lid.1_Silent_p.P144P	NM_022783	NP_073620	Q8TB45	DPTOR_HUMAN	DEP domain containing 6	245	Ser-rich.				intracellular signal transduction|negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|regulation of apoptosis	intracellular	protein binding				0	Lung NSC(37;9.35e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			ATGACAGTCCCTTCTGCCTGA	0.493													15	60					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121228689	121228689	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121228689G>A	uc003yox.2	+	14	1962	c.1697G>A	c.(1696-1698)CGA>CAA	p.R566Q	COL14A1_uc003yoy.2_Missense_Mutation_p.R244Q|COL14A1_uc010mde.1_Missense_Mutation_p.R244Q	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	566	Fibronectin type-III 4.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AATGGTTATCGAATTGTATAT	0.368													37	91					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121262978	121262978	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121262978G>A	uc003yox.2	+	22	2990	c.2725G>A	c.(2725-2727)GAC>AAC	p.D909N	COL14A1_uc003yoy.2_Missense_Mutation_p.D587N	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	909	Fibronectin type-III 7.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AGGCTTCAGCGACGCCCTGAC	0.423													10	47					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121279119	121279119	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121279119G>A	uc003yox.2	+	25	3335	c.3070G>A	c.(3070-3072)GAA>AAA	p.E1024K	COL14A1_uc003yoy.2_Missense_Mutation_p.E702K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1024					cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ACCAGCAAAAGAAGGTAAAAG	0.363													28	167					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121282323	121282323	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121282323G>A	uc003yox.2	+	26	3388	c.3123G>A	c.(3121-3123)TGG>TGA	p.W1041*	COL14A1_uc003yoz.2_Nonsense_Mutation_p.W6*	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1041	VWFA 2.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ATGGATCCTGGAGCATTGGAG	0.428													8	89					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121290766	121290766	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121290766G>A	uc003yox.2	+	28	3695	c.3430G>A	c.(3430-3432)GGA>AGA	p.G1144R	COL14A1_uc003yoz.2_Missense_Mutation_p.G109R	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1144	VWFA 2.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TATAACTGATGGAAGATCACA	0.373													20	46					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121293253	121293253	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121293253C>T	uc003yox.2	+	31	4044	c.3779C>T	c.(3778-3780)CCA>CTA	p.P1260L	COL14A1_uc003yoz.2_Missense_Mutation_p.P225L	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1260	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AATGTGTTTCCATGTTACCAA	0.368													23	111					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121301912	121301912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121301912G>A	uc003yox.2	+	34	4408	c.4143G>A	c.(4141-4143)AAG>AAA	p.K1381K	COL14A1_uc003yoz.2_Silent_p.K346K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1381	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TGGGTGAGAAGGCAATGAACG	0.438													36	67					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121326189	121326189	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121326189G>A	uc003yox.2	+	38	4739	c.4474G>A	c.(4474-4476)GGT>AGT	p.G1492S	COL14A1_uc003yoz.2_Missense_Mutation_p.G457S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1492	Triple-helical region 1 (COL2).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TGGCCCTCGGGGTGAAATTGG	0.473													39	157					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121328208	121328208	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121328208C>T	uc003yox.2	+	40	4896	c.4631C>T	c.(4630-4632)CCA>CTA	p.P1544L	COL14A1_uc003yoz.2_Missense_Mutation_p.P509L	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1544	Triple-helical region 1 (COL2).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GTTGGTTCACCAGGACGTGAT	0.502													14	37					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121344402	121344402	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121344402C>T	uc003yox.2	+	41	4947	c.4682C>T	c.(4681-4683)TCC>TTC	p.S1561F	COL14A1_uc003yoz.2_Missense_Mutation_p.S526F	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1561	Triple-helical region 1 (COL2).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AAGGATGGATCCTCGGGACCT	0.463													19	43					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121379469	121379469	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121379469G>A	uc003yox.2	+	46	5402	c.5137G>A	c.(5137-5139)GGC>AGC	p.G1713S	COL14A1_uc003yoz.2_Missense_Mutation_p.G678S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1713	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AGGTCCAAGAGGCCCCCCTGG	0.373													15	45					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121381702	121381702	+	Silent	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121381702A>C	uc003yox.2	+	47	5554	c.5289A>C	c.(5287-5289)TCA>TCC	p.S1763S	COL14A1_uc003yoz.2_Silent_p.S728S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1763	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ACCCCTCATCATGTTCTGCCT	0.532													23	80					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121383391	121383391	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121383391C>T	uc003yox.2	+	48	5577	c.5312C>T	c.(5311-5313)GCT>GTT	p.A1771V		NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1771	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TCCTCTTTAGCTCCCCATCCA	0.517													18	211					0	0	1	0	0
SNTB1	6641	broad.mit.edu	37	8	121561077	121561077	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121561077C>T	uc010mdg.2	-	5	1484	c.1258G>A	c.(1258-1260)GAC>AAC	p.D420N		NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	420	PH 2.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			TGGGAGAGGTCCCTGCTGGTC	0.522													16	61					0	0	1	0	0
SNTB1	6641	broad.mit.edu	37	8	121823712	121823712	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:121823712C>T	uc010mdg.2	-	1	598	c.372G>A	c.(370-372)GGG>GGA	p.G124G	SNTB1_uc003ype.2_Silent_p.G124G	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	124	PH 1.|PDZ.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			TGATGCTGATCCCCAGCCCGC	0.637													15	31					0	0	1	0	0
HAS2	3037	broad.mit.edu	37	8	122641360	122641360	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:122641360G>A	uc003yph.2	-	2	759	c.221C>T	c.(220-222)TCC>TTC	p.S74F		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	74	Cytoplasmic (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			GGTTTCTAGGGATTTTTTCAT	0.398													79	246					0	0	1	0	0
ZHX2	22882	broad.mit.edu	37	8	123966241	123966241	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:123966241C>T	uc003ypk.1	+	3	3058	c.2491C>T	c.(2491-2493)CCT>TCT	p.P831S		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	831						cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			CGACTGCGTCCCTGCAGAGGC	0.567													6	25					0	0	1	0	0
DERL1	79139	broad.mit.edu	37	8	124034951	124034951	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124034951T>A	uc003ypl.2	-	5	712	c.426A>T	c.(424-426)GTA>GTT	p.V142V	DERL1_uc003ypm.2_Silent_p.V142V|DERL1_uc011lif.1_Intron|DERL1_uc003ypn.2_Silent_p.V142V	NM_024295	NP_077271	Q9BUN8	DERL1_HUMAN	Der1-like domain family, member 1 isoform a	142	Lumenal (Potential).				endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|intracellular transport of viral proteins in host cell|retrograde protein transport, ER to cytosol	integral to endoplasmic reticulum membrane	MHC class I protein binding|receptor activity				0	Lung NSC(37;1.06e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			ACCAAAATGATACAATCATGT	0.418											OREG0018957	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	156					0	0	1	0	0
FAM83A	84985	broad.mit.edu	37	8	124195392	124195392	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124195392C>T	uc003ypv.2	+	2	2310	c.296C>T	c.(295-297)TCC>TTC	p.S99F	FAM83A_uc003ypw.2_Missense_Mutation_p.S99F|FAM83A_uc003ypy.2_Missense_Mutation_p.S99F|FAM83A_uc003ypx.2_Missense_Mutation_p.S99F|FAM83A_uc003ypz.2_Missense_Mutation_p.S99F	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	99										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			GACTCCAGCTCCCTACAGTCC	0.662													11	103					0	0	1	0	0
FAM83A	84985	broad.mit.edu	37	8	124206289	124206289	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124206289G>A	uc003ypv.2	+	4	2688	c.674G>A	c.(673-675)GGA>GAA	p.G225E	FAM83A_uc003ypw.2_Missense_Mutation_p.G225E|FAM83A_uc003ypy.2_Missense_Mutation_p.G169E|FAM83A_uc003ypx.2_Missense_Mutation_p.G225E|FAM83A_uc003ypz.2_Missense_Mutation_p.G225E	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	225										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			AGTGTGGAAGGAGAGATATAC	0.423													7	48					0	0	1	0	0
FAM83A	84985	broad.mit.edu	37	8	124219654	124219654	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124219654C>T	uc003ypv.2	+	5	3045	c.1031C>T	c.(1030-1032)CCC>CTC	p.P344L	FAM83A_uc003ypw.2_Missense_Mutation_p.P344L|FAM83A_uc003ypy.2_Missense_Mutation_p.P288L|FAM83A_uc003ypx.2_Missense_Mutation_p.P344L|FAM83A_uc003ypz.2_Missense_Mutation_p.P344L	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	344	Ser-rich.									ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			GGCAGCCACCCCGGTACCCGA	0.726													9	22					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124371873	124371873	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124371873G>A	uc003yqh.3	-	10	1318	c.1210C>T	c.(1210-1212)CGA>TGA	p.R404*	ATAD2_uc011lii.1_Nonsense_Mutation_p.R195*|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Nonsense_Mutation_p.R404*	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	404					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			ATTTTCATTCGATCTTTATAA	0.353													13	60					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124381320	124381320	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124381320G>A	uc003yqh.3	-	8	1135	c.1027C>T	c.(1027-1029)CCT>TCT	p.P343S	ATAD2_uc011lii.1_Missense_Mutation_p.P134S|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.P343S	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	343					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TTACAGTAAGGACTTCTTGGT	0.403													22	44					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124413058	124413058	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124413058G>A	uc003yqi.3	-	2		c.461C>T			uc003yqk.2_5'Flank			Q6PL18	ATAD2_HUMAN	Homo sapiens PRO2000 mRNA, complete cds.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TGGCCATCACGATGGCTCTGG	0.557													4	42					0	0	1	0	0
FBXO32	114907	broad.mit.edu	37	8	124553147	124553147	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124553147G>A	uc003yqr.2	-	1	300	c.108C>T	c.(106-108)GAC>GAT	p.D36D	FBXO32_uc010mdk.2_Silent_p.D36D	NM_058229	NP_478136	Q969P5	FBX32_HUMAN	F-box only protein 32 isoform 1	36										skin(3)|breast(2)|lung(1)	6	Lung NSC(37;1.13e-13)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			ACCTGCTGAGGTCGCTCACGA	0.687													11	25					0	0	1	0	0
KLHL38	340359	broad.mit.edu	37	8	124664732	124664732	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124664732G>A	uc003yqs.1	-	1	459	c.435C>T	c.(433-435)ATC>ATT	p.I145I		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	145	BACK.										0						CGCAGCTTAAGATTTCTGAGA	0.582													20	51					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	124982286	124982286	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124982286C>T	uc003yqw.2	+	6	602	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	132	C2 1.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			ACTTTGTCTTCGACTTCATTG	0.413													28	75					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	124988179	124988179	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124988179G>A	uc003yqw.2	+	9	931	c.725G>A	c.(724-726)TGG>TAG	p.W242*		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	242	C2 2.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GAGAGACCGTGGGCCAGATTC	0.443													65	121					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	124988220	124988220	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124988220C>T	uc003yqw.2	+	9	972	c.766C>T	c.(766-768)CCC>TCC	p.P256S		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	256	C2 2.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGAAGGGTTGCCCAAAATGAA	0.498													47	176					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	124989729	124989729	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124989729C>T	uc003yqw.2	+	10	1149	c.943C>T	c.(943-945)CCT>TCT	p.P315S		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	315	C2 2.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GGAAATGTTCCCTCCCTTGTG	0.498													33	83					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	124989840	124989840	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:124989840G>A	uc003yqw.2	+	10	1260	c.1054G>A	c.(1054-1056)GGA>AGA	p.G352R		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	352	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CGAACAGGATGGAGACAAAGG	0.443													12	25					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125015581	125015581	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125015581G>A	uc003yqw.2	+	13	1900	c.1694G>A	c.(1693-1695)GGG>GAG	p.G565E	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	565	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GTGACAGAAGGGAACAGGTAG	0.502													11	39					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125025715	125025715	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125025715G>A	uc003yqw.2	+	15	2072	c.1866G>A	c.(1864-1866)CAG>CAA	p.Q622Q	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	622	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGATTTCACAGGAGGCACCTG	0.483													42	88					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125081671	125081671	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125081671G>A	uc003yqw.2	+	29	3995	c.3789G>A	c.(3787-3789)AAG>AAA	p.K1263K	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1263	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AAATGCTCAAGAAGAAACCCA	0.468													19	51					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125083791	125083792	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125083791_125083792GG>AA	uc003yqw.2	+	31	4217_4218	c.4011_4012GG>AA	c.(4009-4014)GAGGAC>GAAAAC	p.D1338N	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1338	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CTAGCTCTGAGGACAGCGGGCA	0.51													16	39					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125094666	125094666	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125094666G>A	uc003yqw.2	+	33	4564	c.4358G>A	c.(4357-4359)CGA>CAA	p.R1453Q	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1453	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGCAAACACCGAGCCATCTGT	0.498													70	122					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125103744	125103744	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125103744G>A	uc003yqw.2	+	34	4678	c.4472G>A	c.(4471-4473)GGA>GAA	p.G1491E	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1491	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AAGCTGGATGGACCCTACTTT	0.453													46	80					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125109512	125109512	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125109512G>A	uc003yqw.2	+	36	4902	c.4696G>A	c.(4696-4698)GGC>AGC	p.G1566S	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1566	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TCTTAACAAGGGCCGCCTGCA	0.453													10	113					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125131980	125131980	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125131980C>T	uc003yqw.2	+	41	5729	c.5523C>T	c.(5521-5523)TTC>TTT	p.F1841F	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1841	Helical; (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			tcgtccttttcatcTACACCT	0.353													34	137					0	0	1	0	0
TMEM65	157378	broad.mit.edu	37	8	125332403	125332403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125332403G>A	uc010mdl.2	-	6	1087	c.545C>T	c.(544-546)TCC>TTC	p.S182F		NM_194291	NP_919267	Q6PI78	TMM65_HUMAN	transmembrane protein 65	182						integral to membrane					0	Lung NSC(37;1.18e-11)|Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GCCTAACCTGGAAGCCAATGC	0.368													47	65					0	0	1	0	0
MTSS1	9788	broad.mit.edu	37	8	125565696	125565696	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125565696C>T	uc003yrk.2	-	14	2339	c.1805G>A	c.(1804-1806)GGA>GAA	p.G602E	NDUFB9_uc011lim.1_Intron|MTSS1_uc003yrh.2_Missense_Mutation_p.G251E|MTSS1_uc011lin.1_Missense_Mutation_p.G376E|MTSS1_uc011lio.1_Missense_Mutation_p.G492E|MTSS1_uc003yri.2_Missense_Mutation_p.G320E|MTSS1_uc003yrj.2_Missense_Mutation_p.G577E|MTSS1_uc003yrl.2_Missense_Mutation_p.G606E	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	602					actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			TCCAATGGTTCCCCGGCGGAC	0.627													18	35					0	0	1	0	0
ZNF572	137209	broad.mit.edu	37	8	125989084	125989084	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125989084G>A	uc003yrr.2	+	3	729	c.574G>A	c.(574-576)GAA>AAA	p.E192K		NM_152412	NP_689625	Q7Z3I7	ZN572_HUMAN	zinc finger protein 572	192	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			CCAGTGTGGTGAATGTGGGAA	0.443										HNSCC(60;0.17)			40	81					0	0	1	0	0
ZNF572	137209	broad.mit.edu	37	8	125989806	125989806	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:125989806G>A	uc003yrr.2	+	3	1451	c.1296G>A	c.(1294-1296)AGG>AGA	p.R432R		NM_152412	NP_689625	Q7Z3I7	ZN572_HUMAN	zinc finger protein 572	432	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			TTCACCAAAGGACACATACAG	0.438										HNSCC(60;0.17)			39	76					0	0	1	0	0
SQLE	6713	broad.mit.edu	37	8	126015634	126015634	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:126015634G>A	uc011liq.1	+	2	1434	c.508G>A	c.(508-510)GGT>AGT	p.G170S		NM_003129	NP_003120	Q14534	ERG1_HUMAN	squalene epoxidase	170					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome	flavin adenine dinucleotide binding|squalene monooxygenase activity			ovary(1)|breast(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)		Butenafine(DB01091)|Naftifine(DB00735)|Terbinafine(DB00857)	CCTGCAGCCGGGTGGTTATCA	0.443													50	225					0	0	1	0	0
KIAA0196	9897	broad.mit.edu	37	8	126051160	126051160	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:126051160G>A	uc003yrt.2	-	25	3325	c.2996C>T	c.(2995-2997)TCA>TTA	p.S999L	KIAA0196_uc011lir.1_Missense_Mutation_p.S851L|KIAA0196_uc003yru.1_Missense_Mutation_p.S573L	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	999					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			GTAAGGAAGTGAAGGGTCCTG	0.403													24	133					0	0	1	0	0
KIAA0196	9897	broad.mit.edu	37	8	126062903	126062903	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:126062903T>C	uc003yrt.2	-	18	2431	c.2102A>G	c.(2101-2103)GAT>GGT	p.D701G	KIAA0196_uc011lir.1_Missense_Mutation_p.D553G|KIAA0196_uc003yru.1_Missense_Mutation_p.D275G	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	701					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			CTGCTTTGGATCCACCTAAGT	0.448													15	67					0	0	1	0	0
KIAA0196	9897	broad.mit.edu	37	8	126091028	126091028	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:126091028G>A	uc003yrt.2	-	6	992	c.663C>T	c.(661-663)TTC>TTT	p.F221F	KIAA0196_uc011lir.1_Silent_p.F73F	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	221					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			CCATACTGATGAAGGATTCGT	0.413													29	80					0	0	1	0	0
POU5F1B	5462	broad.mit.edu	37	8	128428286	128428286	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:128428286G>A	uc003ysf.2	+	1	430	c.175G>A	c.(175-177)GGG>AGG	p.G59R	uc003ysc.1_Intron|uc003ysd.1_Intron|LOC727677_uc003yse.1_Intron|uc011liu.1_RNA	NM_001159542	NP_001153014	Q06416	P5F1B_HUMAN	POU class 5 homeobox 1B	59						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGAGGTGTGGGGGATTCCCCC	0.667													6	26					0	0	1	0	0
POU5F1B	5462	broad.mit.edu	37	8	128428313	128428313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:128428313G>A	uc003ysf.2	+	1	457	c.202G>A	c.(202-204)GAG>AAG	p.E68K	uc003ysc.1_Intron|uc003ysd.1_Intron|LOC727677_uc003yse.1_Intron|uc011liu.1_RNA	NM_001159542	NP_001153014	Q06416	P5F1B_HUMAN	POU class 5 homeobox 1B	68						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCCGCCGTATGAGTTATGTGG	0.657													15	24					0	0	1	0	0
MYC	4609	broad.mit.edu	37	8	128750684	128750684	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:128750684C>T	uc003ysh.1	+	3	689	c.176C>T	c.(175-177)CCG>CTG	p.P59L	MYC_uc003ysi.2_Missense_Mutation_p.P74L	NM_002467	NP_002458	P01106	MYC_HUMAN	myc proto-oncogene protein	59			P -> A (in a Burkitt lymphoma sample).		branching involved in ureteric bud morphogenesis|cell cycle arrest|cell proliferation|cellular iron ion homeostasis|positive regulation of metanephric cap mesenchymal cell proliferation|positive regulation of transcription, DNA-dependent|regulation of telomere maintenance|regulation of transcription from RNA polymerase II promoter|response to drug	nucleolus|nucleoplasm	E-box binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(3)|ovary(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(1;6.19e-134)|all_epithelial(1;1.75e-119)|all_lung(1;5.66e-51)|Breast(1;1.08e-22)|all_neural(1;4.45e-21)|Medulloblastoma(1;1.88e-20)|Colorectal(1;1.92e-09)|Lung SC(1;4.52e-07)|Ovarian(5;0.000122)|Esophageal squamous(12;0.000995)|Renal(1;0.0921)|Hepatocellular(40;0.108)|Myeloproliferative disorder(2;0.135)|Melanoma(291;0.185)	Myeloproliferative disorder(644;0.0255)|Ovarian(118;0.0654)|Breast(495;0.212)|Acute lymphoblastic leukemia(644;0.22)	Epithelial(1;1.63e-94)|all cancers(1;5.82e-87)|OV - Ovarian serous cystadenocarcinoma(1;2.12e-71)|BRCA - Breast invasive adenocarcinoma(1;4.3e-14)|Lung(2;0.000381)|Colorectal(2;0.0102)|LUAD - Lung adenocarcinoma(14;0.0172)|READ - Rectum adenocarcinoma(2;0.0723)|LUSC - Lung squamous cell carcinoma(258;0.151)	KIRC - Kidney renal clear cell carcinoma(542;0.248)		CTGCCCACCCCGCCCCTGTCC	0.677		3	A|T	IGK@|BCL5|BCL7A |BTG1|TRA@|IGH@	Burkitt lymphoma| amplified in other cancers|B-CLL						OREG0018982	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	35					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130763803	130763803	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:130763803C>T	uc003ysr.2	-	10	1810	c.928G>A	c.(928-930)GAA>AAA	p.E310K		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	310						mitochondrion				ovary(2)|skin(1)	3						CAGAAGGGTTCCTCTATTCTT	0.478													33	80					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130765006	130765006	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:130765006G>A	uc003ysr.2	-	7	1664	c.782C>T	c.(781-783)TCA>TTA	p.S261L		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	261						mitochondrion				ovary(2)|skin(1)	3						ggtatgaaatgatggtagcaa	0													7	80					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130778016	130778016	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:130778016G>A	uc003ysr.2	-	4	1310	c.428C>T	c.(427-429)TCA>TTA	p.S143L		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	143						mitochondrion				ovary(2)|skin(1)	3						CTTCAGAAATGATGGCTCTGG	0.502													19	44					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130788431	130788431	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:130788431C>T	uc003ysr.2	-	3	1203	c.321G>A	c.(319-321)GGG>GGA	p.G107G		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	107						mitochondrion				ovary(2)|skin(1)	3						CAGAGGCCTCCCCTGACACAC	0.478													20	89					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130789654	130789654	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:130789654G>A	uc003ysr.2	-	2	1062	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	60						mitochondrion				ovary(2)|skin(1)	3						CATTGAGGGAGAATTCAACTG	0.423													22	52					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130789705	130789705	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:130789705C>T	uc003ysr.2	-	2	1011	c.129G>A	c.(127-129)AAG>AAA	p.K43K		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	43						mitochondrion				ovary(2)|skin(1)	3						AACGAGAATCCTTCTTCTTTC	0.393													40	85					0	0	1	0	0
ASAP1	50807	broad.mit.edu	37	8	131072886	131072886	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:131072886G>A	uc003yta.1	-	27	3159	c.3131C>T	c.(3130-3132)TCC>TTC	p.S1044F	ASAP1_uc003ysz.1_Missense_Mutation_p.S855F|ASAP1_uc011liw.1_Missense_Mutation_p.S1037F	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	1044					cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						GAGGTCGTTGGAGTCTTCAGA	0.532													26	199					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131792787	131792787	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:131792787G>A	uc003ytd.3	-	18	3861	c.3605C>T	c.(3604-3606)TCC>TTC	p.S1202F	ADCY8_uc010mds.2_Missense_Mutation_p.S1071F	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1202	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CCTATTGAGGGACTGGACAAG	0.537										HNSCC(32;0.087)			43	60					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131792974	131792975	+	Silent	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:131792974_131792975GG>AA	uc003ytd.3	-	18	3673_3674	c.3417_3418CC>TT	c.(3415-3420)ATCCTG>ATTTTG	p.1139_1140IL>IL	ADCY8_uc010mds.2_Silent_p.1008_1009IL>IL	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1139_1140	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TGGTCCTTCAGGATGAGATAGG	0.5										HNSCC(32;0.087)			56	99					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131848526	131848526	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:131848526C>T	uc003ytd.3	-	12	2928	c.2672G>A	c.(2671-2673)GGA>GAA	p.G891E	ADCY8_uc010mds.2_Missense_Mutation_p.G760E	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	891					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CACTTACTCTCCACTGTGGTT	0.502										HNSCC(32;0.087)			10	63					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131859669	131859669	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:131859669C>T	uc003ytd.3	-	11	2758	c.2502_splice	c.e11+1	p.E834_splice	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8						activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TAAATAAATACCTCTGGGTAG	0.423										HNSCC(32;0.087)			13	21					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131916027	131916027	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:131916027C>T	uc003ytd.3	-	7	2158	c.1902G>A	c.(1900-1902)GGG>GGA	p.G634G	ADCY8_uc010mds.2_Silent_p.G634G	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	634	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CATTCTGTTTCCCCACGATAT	0.498										HNSCC(32;0.087)			20	63					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131921984	131921984	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:131921984G>A	uc003ytd.3	-	6	1866	c.1610C>T	c.(1609-1611)GCA>GTA	p.A537V	ADCY8_uc010mds.2_Missense_Mutation_p.A537V	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	537	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GAGTTTGTTTGCAATATCCAC	0.468										HNSCC(32;0.087)			85	157					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131922087	131922087	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:131922087C>T	uc003ytd.3	-	6	1763	c.1507G>A	c.(1507-1509)GAT>AAT	p.D503N	ADCY8_uc010mds.2_Missense_Mutation_p.D503N	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	503	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			ATGTCAACATCGTGTTTTGTC	0.468										HNSCC(32;0.087)			17	91					0	0	1	0	0
EFR3A	23167	broad.mit.edu	37	8	132952778	132952778	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:132952778C>T	uc003yte.2	+	2	244	c.43C>T	c.(43-45)CGC>TGC	p.R15C		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	15						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			TTTGCGTCCTCGCTACAAACG	0.408													13	13					0	0	1	0	0
OC90	729330	broad.mit.edu	37	8	133044138	133044138	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133044138C>T	uc003ytg.2	-	11	1021	c.1021G>A	c.(1021-1023)GAC>AAC	p.D341N	OC90_uc011lix.1_Missense_Mutation_p.D341N	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	357	Phospholipase A2-like 2.				lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			CTGTCTAGGTCATCCCTTGGC	0.557													9	19					0	0	1	0	0
OC90	729330	broad.mit.edu	37	8	133051060	133051061	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133051060_133051061TC>AT	uc003ytg.2	-	6	556_557	c.556_557GA>AT	c.(556-558)GAC>ATC	p.D186I	OC90_uc011lix.1_Missense_Mutation_p.D202I	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	202					lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			TGTTGTCAAGTCTTCCTTGATG	0.52													8	21					0	0	1	0	0
OC90	729330	broad.mit.edu	37	8	133053934	133053935	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133053934_133053935GG>AA	uc003ytg.2	-	3	133_134	c.133_134CC>TT	c.(133-135)CCC>TTC	p.P45F	OC90_uc011lix.1_Missense_Mutation_p.P61F	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	61				P -> A (in Ref. 1; CAA78662).	lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			GGTGAAGTGGGGGCCCAGGCAA	0.584													9	17					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141509	133141509	+	Nonstop_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133141509T>G	uc003ytj.2	-	15	2844	c.2619A>C	c.(2617-2619)TAA>TAC	p.*873Y	KCNQ3_uc010mdt.2_Nonstop_Mutation_p.*861Y|uc003yti.2_5'Flank	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	873					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GTGACCTCTTTTAAATGGGCT	0.532													14	51					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141525	133141525	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133141525G>A	uc003ytj.2	-	15	2828	c.2603C>T	c.(2602-2604)TCC>TTC	p.S868F	KCNQ3_uc010mdt.2_Missense_Mutation_p.S856F|uc003yti.2_5'Flank	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	868					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GGGCTTATTGGAAGGGGTCCA	0.532													6	67					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141902	133141902	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133141902C>T	uc003ytj.2	-	15	2451	c.2226G>A	c.(2224-2226)GTG>GTA	p.V742V	KCNQ3_uc010mdt.2_Silent_p.V730V	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	742					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TGGGCCTCTCCACATACGTTG	0.592													17	27					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133150166	133150166	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133150166C>T	uc003ytj.2	-	12	1891	c.1666G>A	c.(1666-1668)GAC>AAC	p.D556N	KCNQ3_uc010mdt.2_Missense_Mutation_p.D556N	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	556					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GAAAGCATGTCGAGATGCCCG	0.453													20	104					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133152366	133152366	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133152366C>T	uc003ytj.2	-	11	1750	c.1525G>A	c.(1525-1527)GAA>AAA	p.E509K	KCNQ3_uc010mdt.2_Missense_Mutation_p.E509K	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	509					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ATCATGTCTTCGATGGGGAAG	0.627													17	57					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133196570	133196570	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133196570C>T	uc003ytj.2	-	3	747	c.522G>A	c.(520-522)AGG>AGA	p.R174R	KCNQ3_uc010mdt.2_Silent_p.R174R	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	174					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CAGCCCAGATCCTCAAAGCAA	0.532													38	94					0	0	1	0	0
LRRC6	23639	broad.mit.edu	37	8	133650208	133650208	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133650208G>A	uc003ytk.2	-	4	476	c.402C>T	c.(400-402)TTC>TTT	p.F134F	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	134	LRRCT.					cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TTGCTACCACGAACTCCCTAT	0.383													18	68					0	0	1	0	0
TMEM71	137835	broad.mit.edu	37	8	133734298	133734298	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133734298G>A	uc003ytp.2	-	7	966	c.737C>T	c.(736-738)TCT>TTT	p.S246F	TMEM71_uc003ytm.1_Missense_Mutation_p.S68F|TMEM71_uc003ytn.2_Missense_Mutation_p.S228F|TMEM71_uc003yto.2_Missense_Mutation_p.S184F	NM_144649	NP_653250	Q6P5X7	TMM71_HUMAN	transmembrane protein 71 isoform 1	247	Helical; (Potential).					integral to membrane				ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			TGCACATGCAGAAATGATTAA	0.313													21	118					0	0	1	0	0
PHF20L1	51105	broad.mit.edu	37	8	133811053	133811053	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133811053C>T	uc003ytt.2	+	5	701	c.376C>T	c.(376-378)CGT>TGT	p.R126C	PHF20L1_uc003ytr.2_Missense_Mutation_p.R126C|PHF20L1_uc010mdv.2_Missense_Mutation_p.R126C|PHF20L1_uc003yts.2_Missense_Mutation_p.R126C|PHF20L1_uc011lja.1_Missense_Mutation_p.R126C|PHF20L1_uc003ytu.1_RNA|PHF20L1_uc003ytq.2_Missense_Mutation_p.R126C	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	126	Tudor 2.						nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			TGGAGTAATTCGTTGTTTAAA	0.373													8	22					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133883780	133883780	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133883780G>A	uc003ytw.2	+	4	503	c.462G>A	c.(460-462)CTG>CTA	p.L154L		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	154	Thyroglobulin type-1 2.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CCCGCCAGCTGGGGAGGCCAA	0.592													13	20					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133894781	133894781	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133894781C>T	uc003ytw.2	+	7	854	c.813C>T	c.(811-813)TTC>TTT	p.F271F		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	271	Thyroglobulin type-1 3.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CTTCCACCTTCACTGAAACCA	0.458													21	228					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133895173	133895173	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133895173C>T	uc003ytw.2	+	8	1045	c.1004C>T	c.(1003-1005)CCC>CTC	p.P335L		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	335	Thyroglobulin type-1 4.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ACGGAAGGGCCCTGCTGGTGT	0.607													19	32					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133899584	133899584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133899584C>T	uc003ytw.2	+	9	2008	c.1967C>T	c.(1966-1968)CCA>CTA	p.P656L		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	656	Thyroglobulin type-1 5.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GGTGGACAGCCAAGGTGCCCC	0.547													17	47					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133899646	133899646	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133899646C>T	uc003ytw.2	+	9	2070	c.2029C>T	c.(2029-2031)CCT>TCT	p.P677S		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	677	Thyroglobulin type-1 6.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GGGCAGCCAGCCTGCTGGCTC	0.552													16	52					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133900607	133900607	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133900607G>A	uc003ytw.2	+	10	2596	c.2555G>A	c.(2554-2556)GGG>GAG	p.G852E		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	852	Thyroglobulin type-1 7.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GCACTGGAAGGGAAACGGCCC	0.537													19	56					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133900636	133900636	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133900636C>T	uc003ytw.2	+	10	2625	c.2584C>T	c.(2584-2586)CTC>TTC	p.L862F		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	862	Thyroglobulin type-1 7.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GGAGAATATCCTCCTGGAGCC	0.537													13	46					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133948017	133948017	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133948017G>A	uc003ytw.2	+	25	4990	c.4949G>A	c.(4948-4950)GGG>GAG	p.G1650E	TG_uc010mdw.2_Missense_Mutation_p.G409E|TG_uc011ljb.1_Missense_Mutation_p.G83E	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1650	Type IIIA.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GATGCACTGGGGAACTCAAAG	0.368													15	43					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133984069	133984069	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:133984069G>A	uc003ytw.2	+	33	6047	c.6006G>A	c.(6004-6006)GCG>GCA	p.A2002A	TG_uc010mdw.2_Silent_p.A761A|TG_uc011ljb.1_Silent_p.A371A|TG_uc011ljc.1_Silent_p.A156A	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2002	Type IIIB.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GGTGCGATGCGGACCCATGCT	0.383													17	64					0	0	1	0	0
SLA	6503	broad.mit.edu	37	8	134057256	134057256	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:134057256G>A	uc003ytz.2	-	7	1289	c.457C>T	c.(457-459)CTG>TTG	p.L153L	TG_uc003ytw.2_Intron|TG_uc010mdw.2_Intron|TG_uc011ljb.1_Intron|TG_uc011ljc.1_Intron|SLA_uc011lje.1_Silent_p.L170L|SLA_uc011ljf.1_Silent_p.L45L|SLA_uc011ljg.1_Intron|SLA_uc011ljd.1_Silent_p.L193L	NM_001045556	NP_001039021	Q13239	SLAP1_HUMAN	Src-like-adaptor isoform a	153	SH2.					endosome	SH3/SH2 adaptor activity			lung(1)|liver(1)	2	all_epithelial(106;3.51e-21)|Lung NSC(106;4.24e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0279)|Breast(495;0.037)	BRCA - Breast invasive adenocarcinoma(115;0.000701)			AGGTCCTCCAGGCACTGGAAG	0.512													18	50					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	134108468	134108468	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:134108468C>T	uc003ytw.2	+	43	7464	c.7423C>T	c.(7423-7425)CCT>TCT	p.P2475S	TG_uc010mdw.2_Missense_Mutation_p.P1234S|TG_uc011ljb.1_Missense_Mutation_p.P844S|TG_uc011ljc.1_Missense_Mutation_p.P608S|SLA_uc003ytz.2_Intron|SLA_uc011lje.1_Intron|SLA_uc011ljf.1_Intron|SLA_uc011ljg.1_Intron|SLA_uc010mea.2_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2475					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CGTGAGTGGCCCTTTCCACTA	0.502													75	160					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	134125725	134125725	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:134125725G>A	uc003ytw.2	+	44	7673	c.7632G>A	c.(7630-7632)CAG>CAA	p.Q2544Q	TG_uc010mdw.2_Silent_p.Q1303Q|TG_uc011ljb.1_Silent_p.Q913Q|TG_uc011ljc.1_Silent_p.Q677Q	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2544					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AGGCACTGCAGAATTCTCTGG	0.498													24	75					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	134125730	134125730	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:134125730C>T	uc003ytw.2	+	44	7678	c.7637C>T	c.(7636-7638)TCT>TTT	p.S2546F	TG_uc010mdw.2_Missense_Mutation_p.S1305F|TG_uc011ljb.1_Missense_Mutation_p.S915F|TG_uc011ljc.1_Missense_Mutation_p.S679F	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2546					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CTGCAGAATTCTCTGGGTGGC	0.512													27	70					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	134125848	134125848	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:134125848G>A	uc003ytw.2	+	44	7795	c.7754_splice	c.e44+1	p.R2585_splice	TG_uc010mdw.2_Splice_Site_p.R1344_splice|TG_uc011ljb.1_Splice_Site_p.R954_splice|TG_uc011ljc.1_Splice_Site_p.R718_splice	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor						hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ATGCCACCCGGTAAGCTAAGC	0.532													7	16					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	134144055	134144055	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:134144055G>A	uc003ytw.2	+	46	7904	c.7863_splice	c.e46-1	p.S2621_splice	TG_uc010mdw.2_Splice_Site_p.S1380_splice|TG_uc011ljb.1_Splice_Site_p.S990_splice|TG_uc011ljc.1_Splice_Site_p.S754_splice	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor						hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TGTTTTCTCAGCCTGGAGCTG	0.463													11	61					0	0	1	0	0
WISP1	8840	broad.mit.edu	37	8	134232995	134232995	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:134232995G>A	uc003yub.2	+	3	597	c.521G>A	c.(520-522)AGC>AAC	p.S174N	WISP1_uc003yuc.2_Intron|WISP1_uc010meb.2_Intron|WISP1_uc010mec.2_Intron|WISP1_uc010med.2_Intron|WISP1_uc003yud.2_Intron	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	174	VWFC.				cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			CGGCGCGTGAGCATACCTGGC	0.677													17	52					0	0	1	0	0
NDRG1	10397	broad.mit.edu	37	8	134261013	134261013	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:134261013G>A	uc003yuh.2	-	11	1286	c.700C>T	c.(700-702)CGG>TGG	p.R234W	NDRG1_uc003yuf.1_Missense_Mutation_p.R45W|NDRG1_uc003yug.2_Missense_Mutation_p.R234W|NDRG1_uc010mee.2_Missense_Mutation_p.R153W|NDRG1_uc010mef.2_Missense_Mutation_p.R168W|NDRG1_uc011ljh.1_Missense_Mutation_p.R62W|NDRG1_uc011lji.1_Intron	NM_001135242	NP_001128714	Q92597	NDRG1_HUMAN	N-myc downstream regulated 1	234					cellular response to hypoxia|response to metal ion	cytoplasm|microtubule cytoskeleton|nucleus|plasma membrane	protein binding			ovary(4)	4	all_epithelial(106;4.26e-24)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			AGGTCGCGCCGGCTGCAGGAA	0.607													11	100					0	0	1	0	0
ST3GAL1	6482	broad.mit.edu	37	8	134472027	134472027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:134472027G>A	uc003yuk.2	-	10	1832	c.1003C>T	c.(1003-1005)CGG>TGG	p.R335W	ST3GAL1_uc003yum.2_Missense_Mutation_p.R335W	NM_173344	NP_775479	Q11201	SIA4A_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	335	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_epithelial(106;1.53e-23)|Lung NSC(106;3.15e-07)|all_lung(105;1.26e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.00721)			TTGAAGATCCGGATTTTATTG	0.572													8	113					0	0	1	0	0
ZFAT	57623	broad.mit.edu	37	8	135613910	135613910	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:135613910G>A	uc003yup.2	-	6	2227	c.2052C>T	c.(2050-2052)CTC>CTT	p.L684L	ZFAT_uc003yun.2_Silent_p.L672L|ZFAT_uc003yuo.2_Silent_p.L672L|ZFAT_uc010meh.2_Silent_p.L672L|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.L672L|ZFAT_uc010mej.2_Silent_p.L622L|ZFAT_uc003yur.2_Silent_p.L672L	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	684					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			CTGGAGGGAGGAGGTCTGAGG	0.597													6	77					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139151280	139151280	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139151280C>T	uc003yuy.2	-	18	4021	c.3850G>A	c.(3850-3852)GAT>AAT	p.D1284N	FAM135B_uc003yux.2_Missense_Mutation_p.D1185N|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1284										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TCAGCATTATCCCTGAAGGTC	0.388										HNSCC(54;0.14)			27	72					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139155304	139155304	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139155304C>T	uc003yuy.2	-	16	3760	c.3589G>A	c.(3589-3591)GAA>AAA	p.E1197K	FAM135B_uc003yux.2_Missense_Mutation_p.E1098K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E759K|FAM135B_uc003yvb.2_3'UTR	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1197										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGAATGATTTCATCCAATAAC	0.458										HNSCC(54;0.14)			6	60					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139158244	139158244	+	Silent	SNP	G	A	A	rs148245905		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139158244G>A	uc003yuy.2	-	15	3669	c.3498C>T	c.(3496-3498)CTC>CTT	p.L1166L	FAM135B_uc003yux.2_Silent_p.L1067L|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.L728L|FAM135B_uc003yvb.2_Missense_Mutation_p.P694S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1166								p.L1166L(2)		ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TTCCTCCAGGGAGCCCCAGTT	0.438										HNSCC(54;0.14)			33	76					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139164131	139164131	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139164131G>A	uc003yuy.2	-	13	2758	c.2587C>T	c.(2587-2589)CCT>TCT	p.P863S	FAM135B_uc003yux.2_Missense_Mutation_p.P764S|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.P425S|FAM135B_uc003yvb.2_Missense_Mutation_p.P425S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	863										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CTGCCATCAGGAAGACAGTGT	0.478										HNSCC(54;0.14)			9	85					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139164584	139164584	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139164584C>T	uc003yuy.2	-	13	2305	c.2134G>A	c.(2134-2136)GAA>AAA	p.E712K	FAM135B_uc003yux.2_Missense_Mutation_p.E613K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E274K|FAM135B_uc003yvb.2_Missense_Mutation_p.E274K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	712										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGCAAGACTTCCCGATCACTG	0.552										HNSCC(54;0.14)			9	27					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139164679	139164679	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139164679G>A	uc003yuy.2	-	13	2210	c.2039C>T	c.(2038-2040)TCA>TTA	p.S680L	FAM135B_uc003yux.2_Missense_Mutation_p.S581L|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.S242L|FAM135B_uc003yvb.2_Missense_Mutation_p.S242L	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	680										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TATGATGGATGAAGATCTCTT	0.537										HNSCC(54;0.14)			9	100					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139263219	139263219	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139263219C>T	uc003yuy.2	-	6	578	c.407G>A	c.(406-408)CGA>CAA	p.R136Q	FAM135B_uc003yux.2_Missense_Mutation_p.R37Q|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	136										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GCCAAGCGTTCGGCTGCTGAC	0.592										HNSCC(54;0.14)			47	111					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139277969	139277969	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139277969G>A	uc003yuy.2	-	4	445	c.274C>T	c.(274-276)CAT>TAT	p.H92Y	FAM135B_uc003yux.2_5'UTR|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	92										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AAGAGTAAATGAACTCGGAAG	0.473										HNSCC(54;0.14)			28	70					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139601552	139601552	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139601552G>A	uc003yvd.2	-	65	5272	c.4825C>T	c.(4825-4827)CAG>TAG	p.Q1609*	COL22A1_uc011ljo.1_Nonsense_Mutation_p.Q889*	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1609					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TAGGCACACTGGGAAGGGTCA	0.602										HNSCC(7;0.00092)			12	38					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139629193	139629193	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139629193C>T	uc003yvd.2	-	54	4281	c.3834G>A	c.(3832-3834)AAG>AAA	p.K1278K	COL22A1_uc011ljo.1_Silent_p.K558K	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1278	Pro-rich.|Gly-rich.|Collagen-like 12.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CTGTGTGTCCCTTGAAGCCCT	0.587										HNSCC(7;0.00092)			15	69					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139727966	139727966	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139727966C>T	uc003yvd.2	-	30	2923	c.2476G>A	c.(2476-2478)GAA>AAA	p.E826K	COL22A1_uc011ljo.1_Missense_Mutation_p.E126K	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	826	Pro-rich.|Gly-rich.|Collagen-like 6.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			AGTCCCAGTTCACCTTTTTCT	0.388										HNSCC(7;0.00092)			29	107					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139838948	139838948	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139838948C>T	uc003yvd.2	-	6	1369	c.922G>A	c.(922-924)GAA>AAA	p.E308K		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	308	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TACCAGTCTTCCTTCCGAGAG	0.507										HNSCC(7;0.00092)			28	55					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139839014	139839014	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139839014G>A	uc003yvd.2	-	6	1303	c.856C>T	c.(856-858)CCC>TCC	p.P286S		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	286	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			AAACCTTGGGGGAACACATCC	0.522										HNSCC(7;0.00092)			5	41					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139890104	139890104	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:139890104C>T	uc003yvd.2	-	3	994	c.547G>A	c.(547-549)GAG>AAG	p.E183K		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	183	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TCCAGCTCCTCCTTGAGTGCC	0.692										HNSCC(7;0.00092)			11	24					0	0	1	0	0
KCNK9	51305	broad.mit.edu	37	8	140630507	140630507	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:140630507G>A	uc003yvf.1	-	2	1183	c.1119C>T	c.(1117-1119)TCC>TCT	p.S373S	KCNK9_uc003yvg.1_Silent_p.S373S|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	373	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			ACACCTAAACGGACTTCCGGC	0.433													30	162					0	0	1	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141370273	141370273	+	Silent	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:141370273A>C	uc003yvj.2	-	9	1505	c.1371T>G	c.(1369-1371)GCT>GCG	p.A457A	TRAPPC9_uc003yvh.2_Silent_p.A555A|TRAPPC9_uc003yvi.1_Silent_p.A448A	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	457					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						TCTGGACCGCAGCCCAGCCTC	0.512													22	36					0	0	1	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141449223	141449223	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:141449223G>A	uc003yvj.2	-	3	792	c.658C>T	c.(658-660)CAG>TAG	p.Q220*	TRAPPC9_uc003yvh.2_Nonsense_Mutation_p.Q318*|TRAPPC9_uc003yvi.1_Nonsense_Mutation_p.Q220*	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	220					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						AGGGAGTCCTGCAGCATCCCT	0.512													22	107					0	0	1	0	0
EIF2C2	27161	broad.mit.edu	37	8	141542669	141542669	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:141542669G>A	uc003yvn.2	-	18	2357	c.2317C>T	c.(2317-2319)CGT>TGT	p.R773C	EIF2C2_uc010men.2_Missense_Mutation_p.R696C|EIF2C2_uc010meo.2_Missense_Mutation_p.R739C	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	773	Piwi.				mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			GAGGAGAAACGATTGTCGTCC	0.517													20	42					0	0	1	0	0
PTK2	5747	broad.mit.edu	37	8	141675040	141675040	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:141675040G>A	uc003yvu.2	-	31	3152	c.2922C>T	c.(2920-2922)CTC>CTT	p.L974L	PTK2_uc011ljp.1_Silent_p.L282L|PTK2_uc003yvo.2_Silent_p.L602L|PTK2_uc011ljq.1_Silent_p.L672L|PTK2_uc003yvp.2_Silent_p.L642L|PTK2_uc003yvq.2_Silent_p.L479L|PTK2_uc003yvr.2_Silent_p.L917L|PTK2_uc003yvs.2_Silent_p.L928L|PTK2_uc003yvt.2_Silent_p.L996L|PTK2_uc003yvv.2_Silent_p.L877L|PTK2_uc011ljr.1_Silent_p.L987L	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	974	Interaction with TGFB1I1.|Interaction with RGNEF (By similarity).				axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			TGGCTGGTAGGAGGGGAATGG	0.542													11	23					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142151420	142151420	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142151420C>T	uc003yvy.2	+	4	658	c.380C>T	c.(379-381)TCC>TTC	p.S127F	DENND3_uc003yvw.1_Missense_Mutation_p.S140F|DENND3_uc003yvx.2_Missense_Mutation_p.P206S|DENND3_uc010mep.2_Missense_Mutation_p.S140F	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	127	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GACTGCCTTTCCTGGTGAGCT	0.647													7	109					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142178189	142178189	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142178189C>T	uc003yvy.2	+	13	1878	c.1600C>T	c.(1600-1602)CAT>TAT	p.H534Y	DENND3_uc010mep.2_Missense_Mutation_p.H495Y|DENND3_uc003yvz.1_Missense_Mutation_p.H218Y	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	534										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GCAGGCATACCATGCCCACTT	0.532													17	140					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142186765	142186765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142186765G>A	uc003yvy.2	+	15	2649	c.2371G>A	c.(2371-2373)GAA>AAA	p.E791K	DENND3_uc010mep.2_Missense_Mutation_p.E752K	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	791										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GTCCAAGAAAGAAGTCTTCGA	0.488													10	89					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142228309	142228309	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142228309G>A	uc003ywd.1	-	4	1585	c.1277C>T	c.(1276-1278)ACC>ATC	p.T426I	SLC45A4_uc003ywc.1_Missense_Mutation_p.T426I|SLC45A4_uc010meq.1_Missense_Mutation_p.T424I	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	477					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GCTGGAGGTGGTGGCCCCGCT	0.677													6	29					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142228673	142228673	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142228673G>A	uc003ywd.1	-	4	1221	c.913C>T	c.(913-915)CTG>TTG	p.L305L	SLC45A4_uc003ywc.1_Silent_p.L305L|SLC45A4_uc010meq.1_Silent_p.L303L	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	356					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			AGGCGGGGCAGCTTGGTCTTG	0.617													15	55					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142231686	142231686	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142231686G>A	uc003ywd.1	-	2	575	c.267C>T	c.(265-267)GGC>GGT	p.G89G	SLC45A4_uc003ywc.1_Silent_p.G89G|SLC45A4_uc010meq.1_Silent_p.G87G	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	140	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CGATGGCAGAGCCGTTAAGGA	0.607													20	65					0	0	1	0	0
GPR20	2843	broad.mit.edu	37	8	142367098	142367098	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142367098C>T	uc003ywf.2	-	2	1015	c.926G>A	c.(925-927)CGA>CAA	p.R309Q		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	309	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			GAAGAGGCCTCGGACGGTGGC	0.637													8	53					0	0	1	0	0
FLJ43860	389690	broad.mit.edu	37	8	142446126	142446126	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142446126C>A	uc003ywi.2	-	28	3523	c.3442G>T	c.(3442-3444)GAC>TAC	p.D1148Y	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	1148							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GCCACCAGGTCCCCGAACAGT	0.677													7	35					0.000157383	0.000157567	1	1	0
FLJ43860	389690	broad.mit.edu	37	8	142458111	142458111	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142458111G>A	uc003ywi.2	-	21	2796	c.2715C>T	c.(2713-2715)TTC>TTT	p.F905F	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	905							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GGAGGGCCAGGAAGAGCTTGG	0.667													7	8					0	0	1	0	0
FLJ43860	389690	broad.mit.edu	37	8	142486068	142486068	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142486068C>T	uc003ywi.2	-	13	1706	c.1625G>A	c.(1624-1626)GGC>GAC	p.G542D	FLJ43860_uc011ljs.1_Intron|FLJ43860_uc010meu.1_Intron	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	542							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GGGTCCCCAGCCCTGGTGCGT	0.532													5	18					0	0	1	0	0
FLJ43860	389690	broad.mit.edu	37	8	142488856	142488856	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142488856C>T	uc003ywi.2	-	10	1186	c.1105G>A	c.(1105-1107)GAC>AAC	p.D369N	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	369							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CAGCGCAGGTCCTCCGAGTTC	0.662													7	6					0	0	1	0	0
FLJ43860	389690	broad.mit.edu	37	8	142500312	142500312	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142500312C>T	uc003ywi.2	-	5	683	c.602G>A	c.(601-603)TGG>TAG	p.W201*	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	201							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CACCACCCGCCACGAGTGCCT	0.652													8	32					0	0	1	0	0
FLJ43860	389690	broad.mit.edu	37	8	142505555	142505555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:142505555C>T	uc003ywi.2	-	3	372	c.291G>A	c.(289-291)ATG>ATA	p.M97I	FLJ43860_uc011ljs.1_5'Flank|FLJ43860_uc010meu.1_5'Flank	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	97							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CAGCACTGTTCATGTCCTGCA	0.532													18	41					0	0	1	0	0
TSNARE1	203062	broad.mit.edu	37	8	143310846	143310846	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143310846C>T	uc003ywk.2	-	13	1659	c.1541G>A	c.(1540-1542)TGA>TAA	p.*514*	TSNARE1_uc011lju.1_Silent_p.*513*|TSNARE1_uc003ywj.2_Silent_p.*515*	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	514					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CGGGTAGCATCACTTTCGGAC	0.368													16	46					0	0	1	0	0
BAI1	575	broad.mit.edu	37	8	143560784	143560784	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143560784C>T	uc003ywm.2	+	7	1845	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	554	Extracellular (Potential).|TSP type-1 5.				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					GGCCCTTCTTCGGGGGAGCAG	0.706													7	10					0	0	1	0	0
BAI1	575	broad.mit.edu	37	8	143563058	143563058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143563058C>T	uc003ywm.2	+	10	2299	c.2116C>T	c.(2116-2118)CCT>TCT	p.P706S		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	706	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CAGCCCCACCCCTGGGGACGT	0.607													4	14					0	0	1	0	0
LYNX1	66004	broad.mit.edu	37	8	143846155	143846155	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143846155G>A	uc003yxb.2	-	5	891	c.264C>T	c.(262-264)GTC>GTT	p.V88V	LYNX1_uc003yxa.2_Silent_p.V54V	NM_023946	NP_076435	Q9BZG9	LYNX1_HUMAN	Ly-6 neurotoxin-like protein 1 isoform a	Error:Variant_position_missing_in_Q9BZG9_after_alignment						anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TGTTGCTGAGGACCCCTGAGT	0.622													20	43					0	0	1	0	0
LY6D	8581	broad.mit.edu	37	8	143867029	143867029	+	Missense_Mutation	SNP	G	A	A	rs144613234		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143867029G>A	uc003yxf.1	-	2	203	c.127C>T	c.(127-129)CGC>TGC	p.R43C		NM_003695	NP_003686	Q14210	LY6D_HUMAN	lymphocyte antigen 6 complex, locus D precursor	43	UPAR/Ly6.				cell adhesion	anchored to membrane|membrane fraction|plasma membrane	protein binding				0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TTGCAGAAGCGAGAGCTGGCC	0.637													33	51					0	0	1	0	0
CYP11B1	1584	broad.mit.edu	37	8	143958475	143958475	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143958475C>T	uc003yxi.2	-	3	566	c.559G>A	c.(559-561)GAC>AAC	p.D187N	CYP11B1_uc010mex.2_5'Flank|CYP11B1_uc003yxh.2_5'Flank|CYP11B1_uc003yxj.2_Missense_Mutation_p.D187N|CYP11B1_uc010mey.2_Missense_Mutation_p.D258N	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	187					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	GGCTGGACGTCCAGGGTCAGG	0.637									Familial_Hyperaldosteronism_type_I				9	19					0	0	1	0	0
CYP11B1	1584	broad.mit.edu	37	8	143960599	143960599	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143960599C>T	uc003yxi.2	-	2	251	c.244G>A	c.(244-246)GAC>AAC	p.D82N	CYP11B1_uc003yxh.2_5'Flank|CYP11B1_uc003yxj.2_Missense_Mutation_p.D82N|CYP11B1_uc010mey.2_Missense_Mutation_p.D127N	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	82					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CCTCCCAAGTCGTACCTGTGG	0.637									Familial_Hyperaldosteronism_type_I				31	61					0	0	1	0	0
CYP11B1	1584	broad.mit.edu	37	8	143961164	143961164	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143961164C>T	uc003yxi.2	-	1	73	c.66G>A	c.(64-66)CAG>CAA	p.Q22Q	CYP11B1_uc003yxj.2_Silent_p.Q22Q|CYP11B1_uc010mey.2_Silent_p.Q22Q	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	22					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	TGCCCAGTGCCTGTGCCCTTT	0.642									Familial_Hyperaldosteronism_type_I				48	98					0	0	1	0	0
CYP11B2	1585	broad.mit.edu	37	8	143993426	143993426	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143993426G>A	uc003yxk.1	-	9	1485	c.1482C>T	c.(1480-1482)TCC>TCT	p.S494S		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	494					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	TGAGGAGGGGGGACGTGCCAG	0.567									Familial_Hyperaldosteronism_type_I				24	57					0	0	1	0	0
CYP11B2	1585	broad.mit.edu	37	8	143995719	143995719	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143995719C>A	uc003yxk.1	-	5	918	c.915G>T	c.(913-915)AAG>AAT	p.K305N		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	305					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	TAGAGTTGGCCTTGATGGCTT	0.587									Familial_Hyperaldosteronism_type_I				17	24					1.00905e-13	1.01353e-13	1	1	0
CYP11B2	1585	broad.mit.edu	37	8	143996538	143996538	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143996538C>T	uc003yxk.1	-	3	522	c.519G>A	c.(517-519)AAG>AAA	p.K173K		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	173					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GCACCTTCTTCTTCAGGGCCT	0.627									Familial_Hyperaldosteronism_type_I				3	19					0	0	1	0	0
CYP11B2	1585	broad.mit.edu	37	8	143999049	143999049	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:143999049G>A	uc003yxk.1	-	1	211	c.208C>T	c.(208-210)CAG>TAG	p.Q70*		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	70					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	TGGAAGGTCTGGTGCATCTCC	0.637									Familial_Hyperaldosteronism_type_I				29	62					0	0	1	0	0
C8orf31	286122	broad.mit.edu	37	8	144126132	144126132	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144126132G>A	uc003yxp.1	+	4	605	c.253G>A	c.(253-255)GAC>AAC	p.D85N	C8orf31_uc003yxq.1_RNA|C8orf31_uc003yxr.1_RNA	NM_173687	NP_775958	Q8N9H6	CH031_HUMAN	hypothetical protein LOC286122	85										ovary(1)	1	all_cancers(97;1.89e-10)|all_epithelial(106;8.73e-09)|Lung NSC(106;0.000161)|all_lung(105;0.000447)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GGGAGACACAGACCCCATCCA	0.627													16	56					0	0	1	0	0
C8orf31	286122	broad.mit.edu	37	8	144126224	144126224	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144126224G>A	uc003yxp.1	+	4	697	c.345G>A	c.(343-345)GAG>GAA	p.E115E	C8orf31_uc003yxq.1_RNA|C8orf31_uc003yxr.1_RNA	NM_173687	NP_775958	Q8N9H6	CH031_HUMAN	hypothetical protein LOC286122	115										ovary(1)	1	all_cancers(97;1.89e-10)|all_epithelial(106;8.73e-09)|Lung NSC(106;0.000161)|all_lung(105;0.000447)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TGAGCTGGGAGAGAGGGCAAG	0.622													9	14					0	0	1	0	0
GPIHBP1	338328	broad.mit.edu	37	8	144297308	144297308	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144297308C>T	uc003yxu.1	+	4	545	c.470C>T	c.(469-471)CCC>CTC	p.P157L		NM_178172	NP_835466	Q8IV16	HDBP1_HUMAN	glycosylphosphatidylinositol anchored high	157					cholesterol homeostasis|intracellular protein transport|positive regulation of chylomicron remnant clearance|positive regulation of lipoprotein lipase activity|protein import|protein localization at cell surface|protein stabilization|response to heparin|triglyceride homeostasis	anchored to external side of plasma membrane|apical plasma membrane|basolateral plasma membrane|high-density lipoprotein particle|integral to membrane|intracellular	apolipoprotein binding|chylomicron binding|lipase binding|lipid binding|protein transmembrane transporter activity				0	all_cancers(97;6.49e-11)|all_epithelial(106;2.77e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GCAGGCGGCCCCCGGGGCAGC	0.687													10	32					0	0	1	0	0
ZFP41	286128	broad.mit.edu	37	8	144332487	144332487	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144332487C>T	uc003yxw.2	+	2	832	c.474C>T	c.(472-474)CTC>CTT	p.L158L	ZFP41_uc003yxv.2_RNA	NM_173832	NP_776193	Q8N8Y5	ZFP41_HUMAN	zinc finger protein 41 homolog	158	C2H2-type 3.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.6e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			GCTCCAATCTCCTGAAACATC	0.562													52	117					0	0	1	0	0
ZNF696	79943	broad.mit.edu	37	8	144378516	144378516	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144378516C>T	uc003yxy.3	+	3	1080	c.671C>T	c.(670-672)GCC>GTC	p.A224V		NM_030895	NP_112157	Q9H7X3	ZN696_HUMAN	zinc finger protein 696	224	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			AGGTCGGACGCCGCCAAGCAC	0.721													4	11					0	0	1	0	0
ZNF696	79943	broad.mit.edu	37	8	144378535	144378535	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144378535C>T	uc003yxy.3	+	3	1099	c.690C>T	c.(688-690)ACC>ACT	p.T230T		NM_030895	NP_112157	Q9H7X3	ZN696_HUMAN	zinc finger protein 696	230	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			ACCGCCGCACCCACACCGGGG	0.726													3	17					0	0	1	0	0
TOP1MT	116447	broad.mit.edu	37	8	144408461	144408461	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144408461G>A	uc003yxz.2	-	4	433	c.414C>T	c.(412-414)TTC>TTT	p.F138F	TOP1MT_uc011lkd.1_Silent_p.F40F|TOP1MT_uc011lke.1_Silent_p.F40F|TOP1MT_uc010mfb.2_Silent_p.F40F|TOP1MT_uc011lkf.1_5'Flank|TOP1MT_uc010mfd.1_5'UTR	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	138					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	GGATCTCCGTGAAGTCACACT	0.557													62	103					0	0	1	0	0
TOP1MT	116447	broad.mit.edu	37	8	144416946	144416946	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144416946G>A	uc003yxz.2	-	1	105	c.86C>T	c.(85-87)CCG>CTG	p.P29L	TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_5'UTR|TOP1MT_uc010mfd.1_5'UTR	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	29					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	GCGCGAGCCCGGGACACCCCG	0.741													8	33					0	0	1	0	0
RHPN1	114822	broad.mit.edu	37	8	144461624	144461624	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144461624C>T	uc003yyb.2	+	8	1024	c.891C>T	c.(889-891)TCC>TCT	p.S297S		NM_052924	NP_443156	Q8TCX5	RHPN1_HUMAN	rhophilin 1	297	BRO1.				signal transduction	intracellular				large_intestine(1)	1	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.156)			CACCTGCCTCCATGGCCCCCC	0.692													3	9					0	0	1	0	0
ZC3H3	23144	broad.mit.edu	37	8	144620343	144620343	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144620343G>A	uc003yyd.2	-	2	1223	c.1194C>T	c.(1192-1194)GCC>GCT	p.A398A		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	398					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CCTTGCTGCTGGCCTCCGACT	0.642													21	71					0	0	1	0	0
ZC3H3	23144	broad.mit.edu	37	8	144621331	144621331	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144621331G>A	uc003yyd.2	-	2	235	c.206C>T	c.(205-207)TCG>TTG	p.S69L		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	69					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CTTGCGCCACGAAGGCCCATG	0.672													32	99					0	0	1	0	0
ZNF623	9831	broad.mit.edu	37	8	144732203	144732203	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144732203C>T	uc003yzd.2	+	1	250	c.161C>T	c.(160-162)CCC>CTC	p.P54L	ZNF623_uc011lkp.1_Missense_Mutation_p.P14L|ZNF623_uc003yzc.2_Missense_Mutation_p.P14L	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	54					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GTCCACGAGCCCAGATTAGGG	0.567													20	56					0	0	1	0	0
MAPK15	225689	broad.mit.edu	37	8	144800391	144800391	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144800391G>A	uc003yzj.2	+	4	246	c.205G>A	c.(205-207)GAC>AAC	p.D69N		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	69	Protein kinase.				protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GGAGTTTGGGGACCATCCCAA	0.592													20	47					0	0	1	0	0
MAPK15	225689	broad.mit.edu	37	8	144802954	144802954	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144802954C>T	uc003yzj.2	+	9	902	c.861C>T	c.(859-861)TTC>TTT	p.F287F		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	287	Protein kinase.				protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			TCCTGGTGTTCGCCCCGGACA	0.672													5	31					0	0	1	0	0
FAM83H	286077	broad.mit.edu	37	8	144810193	144810193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144810193G>A	uc003yzk.2	-	5	1507	c.1438C>T	c.(1438-1440)CGC>TGC	p.R480C	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	480					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			AAACCCGCGCGGCCCCCGCGA	0.721													5	8					0	0	1	0	0
SCRIB	23513	broad.mit.edu	37	8	144875014	144875014	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144875014G>A	uc003yzp.1	-	30	4048	c.4041C>T	c.(4039-4041)GCC>GCT	p.A1347A	SCRIB_uc003yzn.1_Silent_p.A56A|SCRIB_uc003yzo.1_Silent_p.A1347A	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	1347	Pro-rich.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			GCTCCGGGGAGGCTGCAGGCC	0.711													10	18					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940423	144940423	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144940423C>T	uc003zaa.1	-	2	15022	c.15009G>A	c.(15007-15009)GAG>GAA	p.E5003E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5003	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGATGCCGTGCTCCCGGACGA	0.711													24	339					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940459	144940459	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144940459G>A	uc003zaa.1	-	2	14986	c.14973C>T	c.(14971-14973)CTC>CTT	p.L4991L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4991	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGGCCTGGAAGAGGGAGATCT	0.706													17	335					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940488	144940488	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144940488C>T	uc003zaa.1	-	2	14957	c.14944G>A	c.(14944-14946)GAC>AAC	p.D4982N		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4982	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GTGTAGGGGTCGGTGTAGCCG	0.701													14	300					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940498	144940498	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144940498G>A	uc003zaa.1	-	2	14947	c.14934C>T	c.(14932-14934)ACC>ACT	p.T4978T		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4978	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CGGTGTAGCCGGTGACGGCGC	0.706													14	260					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940609	144940609	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144940609G>A	uc003zaa.1	-	2	14836	c.14823C>T	c.(14821-14823)TTC>TTT	p.F4941F		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4941	Plectin 62.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGTCGATGACGAAGCCGGTGG	0.716													4	48					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144941152	144941152	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144941152C>T	uc003zaa.1	-	1	6283	c.6270G>A	c.(6268-6270)CGG>CGA	p.R2090R		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	2090						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTCGGAGTCCCGTGCAGCCT	0.597													14	121					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144941685	144941685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144941685G>A	uc003zaa.1	-	1	5750	c.5737C>T	c.(5737-5739)CTC>TTC	p.L1913F		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1913	Plectin 31.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCCTCATGGAGGCTCATGACC	0.662													9	37					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144942348	144942348	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144942348C>T	uc003zaa.1	-	1	5087	c.5074G>A	c.(5074-5076)GAC>AAC	p.D1692N		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1692	Plectin 29.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGCACGGGGTCGATGATGCCG	0.677													32	68					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144942442	144942442	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144942442C>T	uc003zaa.1	-	1	4993	c.4980G>A	c.(4978-4980)CAG>CAA	p.Q1660Q		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1660	Plectin 28.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGAGGGAGATCTGCTGCCCGG	0.642													34	74					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144943768	144943768	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144943768G>A	uc003zaa.1	-	1	3667	c.3654C>T	c.(3652-3654)ACC>ACT	p.T1218T		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1218						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGGCCTCAAGGGTCTCCTGGG	0.716													7	5					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144944640	144944640	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144944640C>T	uc003zaa.1	-	1	2795	c.2782G>A	c.(2782-2784)GGC>AGC	p.G928S		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	928	Plectin 17.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTCCCAGGCCGCACAGGTAC	0.682													7	28					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144944740	144944740	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144944740C>T	uc003zaa.1	-	1	2695	c.2682G>A	c.(2680-2682)GAG>GAA	p.E894E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	894	Plectin 16.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGATACCGGCCTCCAGGAGCT	0.662													5	16					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144945144	144945144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144945144G>A	uc003zaa.1	-	1	2291	c.2278C>T	c.(2278-2280)CCT>TCT	p.P760S		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	760	Plectin 15.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCGTCAGAAGGGTCCAACAGG	0.642													40	125					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144994645	144994645	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144994645G>A	uc003zaf.1	-	32	9925	c.9755C>T	c.(9754-9756)TCC>TTC	p.S3252F	PLEC_uc003zab.1_Missense_Mutation_p.S3115F|PLEC_uc003zac.1_Missense_Mutation_p.S3119F|PLEC_uc003zad.2_Missense_Mutation_p.S3115F|PLEC_uc003zae.1_Missense_Mutation_p.S3083F|PLEC_uc003zag.1_Missense_Mutation_p.S3093F|PLEC_uc003zah.2_Missense_Mutation_p.S3101F|PLEC_uc003zaj.2_Missense_Mutation_p.S3142F	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3252	Plectin 9.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CTGGAACAGGGAGACGCTCTG	0.657													5	21					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144995679	144995679	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144995679G>A	uc003zaf.1	-	32	8891	c.8721C>T	c.(8719-8721)GCC>GCT	p.A2907A	PLEC_uc003zab.1_Silent_p.A2770A|PLEC_uc003zac.1_Silent_p.A2774A|PLEC_uc003zad.2_Silent_p.A2770A|PLEC_uc003zae.1_Silent_p.A2738A|PLEC_uc003zag.1_Silent_p.A2748A|PLEC_uc003zah.2_Silent_p.A2756A|PLEC_uc003zaj.2_Silent_p.A2797A	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2907	Globular 2.|Plectin 3.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CGGCGCGCTCGGCCGACAGCA	0.657													20	64					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144995895	144995895	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:144995895G>A	uc003zaf.1	-	32	8675	c.8505C>T	c.(8503-8505)ATC>ATT	p.I2835I	PLEC_uc003zab.1_Silent_p.I2698I|PLEC_uc003zac.1_Silent_p.I2702I|PLEC_uc003zad.2_Silent_p.I2698I|PLEC_uc003zae.1_Silent_p.I2666I|PLEC_uc003zag.1_Silent_p.I2676I|PLEC_uc003zah.2_Silent_p.I2684I|PLEC_uc003zaj.2_Silent_p.I2725I	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2835	Plectin 1.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						ACAGCCCTGCGATACTGCTGC	0.672													11	42					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	145001728	145001728	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145001728G>A	uc003zaf.1	-	27	4187	c.4017C>T	c.(4015-4017)CTC>CTT	p.L1339L	PLEC_uc003zab.1_Silent_p.L1202L|PLEC_uc003zac.1_Silent_p.L1206L|PLEC_uc003zad.2_Silent_p.L1202L|PLEC_uc003zae.1_Silent_p.L1170L|PLEC_uc003zag.1_Silent_p.L1180L|PLEC_uc003zah.2_Silent_p.L1188L|PLEC_uc003zaj.2_Silent_p.L1229L	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	1339	Spectrin 4.|Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCAGTTGCTCGAGCTCGCGCT	0.716													3	10					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	145006619	145006619	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145006619G>A	uc003zaf.1	-	16	2507	c.2337C>T	c.(2335-2337)TTC>TTT	p.F779F	PLEC_uc003zab.1_Silent_p.F642F|PLEC_uc003zac.1_Silent_p.F646F|PLEC_uc003zad.2_Silent_p.F642F|PLEC_uc003zae.1_Silent_p.F610F|PLEC_uc003zag.1_Silent_p.F620F|PLEC_uc003zah.2_Silent_p.F628F|PLEC_uc003zaj.2_Silent_p.F669F	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	779	Spectrin 2.|Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CGCTCCAGTCGAAGCCCACCT	0.632													24	64					0	0	1	0	0
GRINA	2907	broad.mit.edu	37	8	145065532	145065532	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145065532C>T	uc003zan.1	+	2	307	c.141C>T	c.(139-141)TTC>TTT	p.F47F	GRINA_uc003zao.1_Silent_p.F47F|GRINA_uc003zap.1_Silent_p.F47F	NM_001009184	NP_001009184	Q7Z429	GRINA_HUMAN	glutamate receptor, ionotropic, N-methyl	47	Pro-rich.					integral to membrane				central_nervous_system(1)	1	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGCCCCCTTTCCAGCCCTCCC	0.706													3	19					0	0	1	0	0
GRINA	2907	broad.mit.edu	37	8	145066418	145066418	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145066418C>T	uc003zan.1	+	5	865	c.699C>T	c.(697-699)GTC>GTT	p.V233V	GRINA_uc003zao.1_Silent_p.V233V|GRINA_uc003zap.1_Silent_p.V233V	NM_001009184	NP_001009184	Q7Z429	GRINA_HUMAN	glutamate receptor, ionotropic, N-methyl	233	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGCAGTCGGTCCTGACCGCCA	0.627													18	41					0	0	1	0	0
SPATC1	375686	broad.mit.edu	37	8	145094856	145094856	+	Silent	SNP	C	T	T	rs60729674	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145094856C>T	uc011lkw.1	+	2	360	c.258C>T	c.(256-258)CTC>CTT	p.L86L	SPATC1_uc011lkx.1_Silent_p.L86L	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	86										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AACGAGTCCTCGAAGAAGTGG	0.642													26	84					0	0	1	0	0
SPATC1	375686	broad.mit.edu	37	8	145095248	145095248	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145095248C>T	uc011lkw.1	+	2	752	c.650C>T	c.(649-651)CCC>CTC	p.P217L	SPATC1_uc011lkx.1_Missense_Mutation_p.P217L	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	217										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTGGCCAACCCCATGAGCAAC	0.682													14	62					0	0	1	0	0
SPATC1	375686	broad.mit.edu	37	8	145095669	145095669	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145095669C>T	uc011lkw.1	+	3	1069	c.967C>T	c.(967-969)CCC>TCC	p.P323S	SPATC1_uc011lkx.1_Missense_Mutation_p.P323S	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	323										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			tgcatctgtccccacctcccc	0.378													6	18					0	0	1	0	0
OPLAH	26873	broad.mit.edu	37	8	145109543	145109544	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145109543_145109544GG>AA	uc003zar.3	-	19	2688_2689	c.2606_2607CC>TT	c.(2605-2607)CCC>CTT	p.P869L	OPLAH_uc003zas.1_Missense_Mutation_p.P144S	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	869							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	TGGTGGAGTGGGGGGGCATGGA	0.644													6	39					0	0	1	0	0
OPLAH	26873	broad.mit.edu	37	8	145109788	145109788	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145109788G>A	uc003zar.3	-	18	2520	c.2438C>T	c.(2437-2439)CCT>CTT	p.P813L	OPLAH_uc003zas.1_Missense_Mutation_p.P62L	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	813							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	CACGTCGCCAGGGTGGAGATC	0.517													11	26					0	0	1	0	0
OPLAH	26873	broad.mit.edu	37	8	145111140	145111140	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145111140C>T	uc003zar.3	-	15	2088	c.2006G>A	c.(2005-2007)GGG>GAG	p.G669E	OPLAH_uc003zas.1_5'Flank	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	669							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	CTGGTAGCCCCCCTCAAAGTA	0.637													18	59					0	0	1	0	0
OPLAH	26873	broad.mit.edu	37	8	145111880	145111880	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145111880C>T	uc003zar.3	-	12	1759	c.1677G>A	c.(1675-1677)GTG>GTA	p.V559V	OPLAH_uc003zas.1_5'Flank	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	559							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	GCAGAGCATCCACACACTGCT	0.652													3	7					0	0	1	0	0
OPLAH	26873	broad.mit.edu	37	8	145114840	145114840	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145114840G>A	uc003zar.3	-	2	178	c.96C>T	c.(94-96)GTC>GTT	p.V32V	OPLAH_uc003zat.1_5'Flank	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	32							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	GCAGTTTTAAGACCCGCACGT	0.667													15	50					0	0	1	0	0
BOP1	23246	broad.mit.edu	37	8	145512850	145512850	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145512850C>T	uc003zbr.1	-	2	303	c.235G>A	c.(235-237)GAG>AAG	p.E79K	HSF1_uc003zbt.3_5'Flank|HSF1_uc003zbu.3_5'Flank	NM_015201	NP_056016	Q14137	BOP1_HUMAN	block of proliferation 1	79					cell proliferation|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|regulation of cell cycle	nucleoplasm|PeBoW complex	protein binding				0	all_cancers(97;4.06e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;2.61e-39)|all cancers(56;1.37e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.087)			TCTCCCTCCTCGTCGCCTTCG	0.612													25	98					0	0	1	0	0
GPR172A	79581	broad.mit.edu	37	8	145583638	145583638	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145583638C>T	uc003zcc.1	+	3	643	c.486C>T	c.(484-486)GCC>GCT	p.A162A	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Silent_p.A162A|GPR172A_uc003zce.1_Silent_p.A162A|GPR172A_uc010mfy.1_Silent_p.A162A|GPR172A_uc003zcf.1_Silent_p.A162A|GPR172A_uc011llc.1_Silent_p.A74A	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	162	Helical; (Potential).					integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			GCGTGCTGGCCCTAGTGCAGG	0.652													47	112					0	0	1	0	0
GPR172A	79581	broad.mit.edu	37	8	145583659	145583659	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145583659C>T	uc003zcc.1	+	3	664	c.507C>T	c.(505-507)CGC>CGT	p.R169R	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Silent_p.R169R|GPR172A_uc003zce.1_Silent_p.R169R|GPR172A_uc010mfy.1_Silent_p.R169R|GPR172A_uc003zcf.1_Silent_p.R169R|GPR172A_uc011llc.1_Silent_p.R81R	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	169						integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			GTGTGGGCCGCCTCGAGTGCC	0.667													27	110					0	0	1	0	0
GPR172A	79581	broad.mit.edu	37	8	145583669	145583669	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145583669C>T	uc003zcc.1	+	3	674	c.517C>T	c.(517-519)CCG>TCG	p.P173S	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Missense_Mutation_p.P173S|GPR172A_uc003zce.1_Missense_Mutation_p.P173S|GPR172A_uc010mfy.1_Missense_Mutation_p.P173S|GPR172A_uc003zcf.1_Missense_Mutation_p.P173S|GPR172A_uc011llc.1_Missense_Mutation_p.P85S	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	173						integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			CCTCGAGTGCCCGCCAGCCCC	0.667													21	100					0	0	1	0	0
GPR172A	79581	broad.mit.edu	37	8	145584116	145584116	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145584116C>T	uc003zcc.1	+	3	1121	c.964C>T	c.(964-966)CCC>TCC	p.P322S	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Missense_Mutation_p.P322S|GPR172A_uc003zce.1_Missense_Mutation_p.P322S|GPR172A_uc010mfy.1_Missense_Mutation_p.P322S|GPR172A_uc003zcf.1_Missense_Mutation_p.P322S|GPR172A_uc011llc.1_Missense_Mutation_p.P234S	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	322	Helical; (Potential).					integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			TGCTGCCAATCCCCTGGCCTG	0.662													47	81					0	0	1	0	0
SLC39A4	55630	broad.mit.edu	37	8	145642042	145642042	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145642042C>T	uc003zcq.2	-	1	232	c.132G>A	c.(130-132)CTG>CTA	p.L44L	SLC39A4_uc003zco.2_5'Flank|SLC39A4_uc003zcp.2_5'Flank	NM_130849	NP_570901	Q6P5W5	S39A4_HUMAN	solute carrier family 39 (zinc transporter),	44	Extracellular (Potential).					cytoplasmic membrane-bounded vesicle|integral to membrane|recycling endosome membrane	zinc ion transmembrane transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;1.12e-40)|all cancers(56;8.17e-36)|BRCA - Breast invasive adenocarcinoma(115;0.0407)|Colorectal(110;0.055)			ACAGGCCGCCCAGAGCCTCTT	0.677													5	17					0	0	1	0	0
KIFC2	90990	broad.mit.edu	37	8	145692663	145692663	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145692663G>A	uc003zcz.2	+	4	473	c.408G>A	c.(406-408)GGG>GGA	p.G136G	CYHR1_uc003zcv.2_5'Flank|CYHR1_uc003zcw.2_5'Flank|CYHR1_uc003zcx.2_5'Flank|CYHR1_uc003zcy.2_5'Flank	NM_145754	NP_665697	Q96AC6	KIFC2_HUMAN	kinesin family member C2	136					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GCCCCAGGGGGAGGCAGGCCC	0.612											OREG0019057	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	45	66					0	0	1	0	0
LRRC14	9684	broad.mit.edu	37	8	145745326	145745326	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145745326C>A	uc003zdk.1	+	2	363	c.217C>A	c.(217-219)CGT>AGT	p.R73S	RECQL4_uc003zdj.2_5'Flank|LRRC14_uc003zdl.1_Missense_Mutation_p.R73S|LRRC14_uc003zdo.2_5'Flank	NM_014665	NP_055480	Q15048	LRC14_HUMAN	leucine rich repeat containing 14	73											0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CCACTGCAGCCGTGCCCTCCT	0.627													16	68					2.35188e-11	2.36041e-11	1	1	0
ARHGAP39	80728	broad.mit.edu	37	8	145770733	145770733	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145770733G>A	uc003zdt.1	-	7	2976	c.2421C>T	c.(2419-2421)CTC>CTT	p.L807L	ARHGAP39_uc011llk.1_Silent_p.L807L|ARHGAP39_uc003zds.1_Silent_p.L807L	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	807	MyTH4.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						AGATGGCCATGAGCTCCCAGC	0.637													9	45					0	0	1	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145770958	145770958	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145770958G>A	uc003zdt.1	-	7	2751	c.2196C>T	c.(2194-2196)ATC>ATT	p.I732I	ARHGAP39_uc011llk.1_Silent_p.I732I|ARHGAP39_uc003zds.1_Silent_p.I732I	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	732	MyTH4.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						CGCTTGTCACGATCATGGGCT	0.612													13	41					0	0	1	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145806329	145806329	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145806329G>A	uc003zdt.1	-	4	968	c.413C>T	c.(412-414)TCC>TTC	p.S138F	ARHGAP39_uc011llk.1_Missense_Mutation_p.S138F|ARHGAP39_uc003zds.1_Missense_Mutation_p.S138F	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	138					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						CTCCAGGGAGGAGCTGGTGCT	0.716													4	18					0	0	1	0	0
ZNF251	90987	broad.mit.edu	37	8	145947971	145947971	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145947971G>A	uc003zdv.3	-	5	1330	c.1074C>T	c.(1072-1074)TTC>TTT	p.F358F		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	358	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		AGCTTCGACTGAAGGCCTTCC	0.507													22	72					0	0	1	0	0
ZNF34	80778	broad.mit.edu	37	8	145999601	145999601	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:145999601G>A	uc003zdy.3	-	6	835	c.733C>T	c.(733-735)CCT>TCT	p.P245S	ZNF34_uc010mgb.2_Missense_Mutation_p.P142S|ZNF34_uc003zdx.3_Missense_Mutation_p.P224S	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	245					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		TTCCCAGTAGGAATTTTCTGA	0.403													12	25					0	0	1	0	0
ZNF16	7564	broad.mit.edu	37	8	146156154	146156154	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr8:146156154G>A	uc003zet.2	-	4	2206	c.2019C>T	c.(2017-2019)ATC>ATT	p.I673I	ZNF16_uc003zeu.2_Silent_p.I673I	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	673	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		ACTGGTGTTTGATCAACTTTG	0.527													35	166					0	0	1	0	0
FOXD4	2298	broad.mit.edu	37	9	116866	116866	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116866C>T	uc003zfz.2	-	1	1552	c.1254G>A	c.(1252-1254)GGG>GGA	p.G418G		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	418					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		CTGGTGAGGTCCCCTCTCCGC	0.697													7	46					0	0	1	0	0
DOCK8	81704	broad.mit.edu	37	9	328088	328088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:328088C>T	uc003zgf.2	+	9	1073	c.961C>T	c.(961-963)CCT>TCT	p.P321S	DOCK8_uc011lls.1_Missense_Mutation_p.P321S|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Missense_Mutation_p.P253S|DOCK8_uc003zgg.2_Missense_Mutation_p.P253S|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	321					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		AGCTCACACGCCTTCAGTGGC	0.458													7	59					0	0	1	0	0
DOCK8	81704	broad.mit.edu	37	9	420556	420556	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:420556C>T	uc003zgf.2	+	31	4108	c.3996C>T	c.(3994-3996)TTC>TTT	p.F1332F	DOCK8_uc010mgu.2_Silent_p.F634F|DOCK8_uc010mgv.2_Silent_p.F1232F|DOCK8_uc003zgk.2_Silent_p.F790F	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	1332	DHR-2.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		ATCTACTTTTCATCTGTGTGT	0.418													42	76					0	0	1	0	0
KANK1	23189	broad.mit.edu	37	9	711134	711134	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:711134C>T	uc003zgl.1	+	7	1017	c.368C>T	c.(367-369)CCC>CTC	p.P123L	KANK1_uc003zgm.2_Missense_Mutation_p.P123L|KANK1_uc003zgn.1_Missense_Mutation_p.P123L|KANK1_uc003zgo.1_Missense_Mutation_p.P123L|KANK1_uc003zgp.1_Missense_Mutation_p.P123L|KANK1_uc003zgq.2_5'UTR|KANK1_uc003zgr.1_5'UTR|KANK1_uc003zgs.1_5'UTR	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	123					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		AAGCCACCTCCCCCTCTGGAG	0.502													54	57					0	0	1	0	0
DMRT1	1761	broad.mit.edu	37	9	916880	916880	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:916880C>T	uc003zgv.2	+	4	1089	c.940C>T	c.(940-942)CCC>TCC	p.P314S		NM_021951	NP_068770	Q9Y5R6	DMRT1_HUMAN	doublesex and mab-3 related transcription factor	314					cell differentiation|male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(10;2.66e-10)|Lung NSC(10;2.82e-10)|Breast(48;0.232)		Lung(218;0.037)		TGAGGATGCTCCCTCTTACCC	0.557													8	79					0	0	1	0	0
DMRT3	58524	broad.mit.edu	37	9	990476	990476	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:990476G>A	uc003zgw.1	+	2	928	c.890G>A	c.(889-891)CGA>CAA	p.R297Q		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	297					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		GGAGCAGAGCGAACTTCCGCA	0.582													13	56					0	0	1	0	0
DMRT3	58524	broad.mit.edu	37	9	990672	990672	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:990672C>T	uc003zgw.1	+	2	1124	c.1086C>T	c.(1084-1086)TTC>TTT	p.F362F		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	362					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		AGCCCCCTTTCCCCCAGCCAC	0.587													11	58					0	0	1	0	0
DMRT2	10655	broad.mit.edu	37	9	1057157	1057157	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:1057157G>A	uc003zha.2	+	4	1770	c.1570G>A	c.(1570-1572)GAC>AAC	p.D524N	DMRT2_uc003zgx.3_Missense_Mutation_p.D291N|DMRT2_uc010mgz.2_Missense_Mutation_p.D291N|DMRT2_uc003zgy.3_Missense_Mutation_p.D368N|DMRT2_uc003zhb.3_3'UTR|DMRT2_uc011llt.1_3'UTR|DMRT2_uc011llu.1_3'UTR|DMRT2_uc011llv.1_Missense_Mutation_p.D524N	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	524					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		ATGTGCAAAAGACCTTTTTGT	0.393													11	91					0	0	1	0	0
SMARCA2	6595	broad.mit.edu	37	9	2096748	2096748	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:2096748C>T	uc003zhc.2	+	20	3074	c.2975C>T	c.(2974-2976)TCT>TTT	p.S992F	SMARCA2_uc003zhd.2_Missense_Mutation_p.S992F|SMARCA2_uc010mha.2_Missense_Mutation_p.S925F	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	992					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		ACAGATGGTTCTGAGAAAGAT	0.448													13	99					0	0	1	0	0
SMARCA2	6595	broad.mit.edu	37	9	2110321	2110321	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:2110321C>T	uc003zhc.2	+	24	3459	c.3360C>T	c.(3358-3360)TTC>TTT	p.F1120F	SMARCA2_uc003zhd.2_Silent_p.F1120F|SMARCA2_uc010mha.2_Silent_p.F1053F	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1120	Helicase C-terminal.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		CCCAGTATTTCATTTTCTTGC	0.453													26	57					0	0	1	0	0
SMARCA2	6595	broad.mit.edu	37	9	2161844	2161844	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:2161844C>T	uc003zhc.2	+	28	4239	c.4140C>T	c.(4138-4140)CCC>CCT	p.P1380P	SMARCA2_uc003zhd.2_Silent_p.P1380P|SMARCA2_uc010mha.2_Silent_p.P1313P|SMARCA2_uc011llw.1_Silent_p.P84P|SMARCA2_uc003zhf.2_Silent_p.P44P|SMARCA2_uc011llx.1_Silent_p.P44P|SMARCA2_uc003zhe.2_Silent_p.P86P|SMARCA2_uc003zhg.2_Silent_p.P44P|SMARCA2_uc010mhb.2_Silent_p.P68P	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1380					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		CACCAAATCCCCCCAAACTGA	0.438													15	28					0	0	1	0	0
SMARCA2	6595	broad.mit.edu	37	9	2182194	2182194	+	Silent	SNP	C	T	T	rs1803766		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:2182194C>T	uc003zhc.2	+	31	4512	c.4413C>T	c.(4411-4413)GTC>GTT	p.V1471V	SMARCA2_uc003zhd.2_Silent_p.V1453V|SMARCA2_uc010mha.2_Silent_p.V1386V|SMARCA2_uc011llw.1_Silent_p.V157V|SMARCA2_uc003zhf.2_Silent_p.V135V|SMARCA2_uc011llx.1_Silent_p.V117V|SMARCA2_uc003zhe.2_Silent_p.V159V|SMARCA2_uc003zhg.2_Silent_p.V117V|SMARCA2_uc010mhb.2_Silent_p.V141V	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1471	Bromo.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		AGAAGGATGTCATGCTTCTCT	0.443													16	133					0	0	1	0	0
VLDLR	7436	broad.mit.edu	37	9	2646354	2646354	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:2646354T>C	uc003zhk.1	+	11	1902	c.1505T>C	c.(1504-1506)GTT>GCT	p.V502A	VLDLR_uc003zhl.1_Missense_Mutation_p.V502A|VLDLR_uc003zhm.1_Intron|VLDLR_uc003zhn.1_Missense_Mutation_p.V461A	NM_003383	NP_003374	P98155	VLDLR_HUMAN	very low density lipoprotein receptor isoform a	502	Extracellular (Potential).|LDL-receptor class B 2.				cholesterol metabolic process|endocytosis|lipid transport|memory|very-low-density lipoprotein particle clearance	coated pit|integral to membrane|membrane fraction|plasma membrane|very-low-density lipoprotein particle	apolipoprotein binding|calcium ion binding|low-density lipoprotein receptor activity|very-low-density lipoprotein particle receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(50;0.0668)|Lung(218;0.123)		GATGACAAGGTTGGTAGACAT	0.393													35	45					0	0	1	0	0
KCNV2	169522	broad.mit.edu	37	9	2717932	2717932	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:2717932G>A	uc003zho.1	+	1	407	c.193G>A	c.(193-195)GAC>AAC	p.D65N		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	65	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		CGAGGAGGAGGACCAGTGGAA	0.662													5	52					0	0	1	0	0
KCNV2	169522	broad.mit.edu	37	9	2718585	2718585	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:2718585G>A	uc003zho.1	+	1	1060	c.846G>A	c.(844-846)GTG>GTA	p.V282V		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	282	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		TCAACACCGTGGAGGAGATGC	0.672													3	16					0	0	1	0	0
KCNV2	169522	broad.mit.edu	37	9	2718589	2718589	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:2718589G>A	uc003zho.1	+	1	1064	c.850G>A	c.(850-852)GAG>AAG	p.E284K		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	284	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		CACCGTGGAGGAGATGCAGCA	0.672													5	16					0	0	1	0	0
GLIS3	169792	broad.mit.edu	37	9	4285981	4285981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:4285981G>A	uc003zii.1	-	2	1158	c.445C>T	c.(445-447)CCC>TCC	p.P149S	GLIS3_uc003zhx.1_Intron|GLIS3_uc003zic.1_Intron|GLIS3_uc003zie.1_Intron|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_Intron|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_Intron|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron			Q8NEA6	GLIS3_HUMAN	SubName: Full=GLIS family zinc finger 3 transcript variant TS2; SubName: Full=GLIS family zinc finger 3 transcript variant TS3; SubName: Full=GLIS family zinc finger 3 transcript variant TS4; SubName: Full=GLIS family zinc finger 3 transcript variant TS5; Flags: Fragment;	Error:Variant_position_missing_in_Q8NEA6_after_alignment					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		CAGAAAATGGGATGGGGGAGA	0.408													8	50					0	0	1	0	0
GLIS3	169792	broad.mit.edu	37	9	4285999	4285999	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:4285999C>T	uc003zii.1	-	2	1140	c.427G>A	c.(427-429)GAT>AAT	p.D143N	GLIS3_uc003zhx.1_Intron|GLIS3_uc003zic.1_Intron|GLIS3_uc003zie.1_Intron|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_Intron|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_Intron|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron			Q8NEA6	GLIS3_HUMAN	SubName: Full=GLIS family zinc finger 3 transcript variant TS2; SubName: Full=GLIS family zinc finger 3 transcript variant TS3; SubName: Full=GLIS family zinc finger 3 transcript variant TS4; SubName: Full=GLIS family zinc finger 3 transcript variant TS5; Flags: Fragment;	Error:Variant_position_missing_in_Q8NEA6_after_alignment					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		AGAAAAAAATCGTTTCCATTT	0.393													30	53					0	0	1	0	0
SLC1A1	6505	broad.mit.edu	37	9	4544603	4544603	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:4544603A>G	uc003zij.1	+	2	364	c.128A>G	c.(127-129)AAC>AGC	p.N43S		NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	43					D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	GAACACAGCAACCTCTCAACT	0.388													23	118					0	0	1	0	0
SLC1A1	6505	broad.mit.edu	37	9	4576603	4576603	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:4576603G>A	uc003zij.1	+	10	1269	c.1033G>A	c.(1033-1035)GAA>AAA	p.E345K	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	345					D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	CCGCTGTGCTGAAGAAAATAA	0.478													10	92					0	0	1	0	0
JAK2	3717	broad.mit.edu	37	9	5069154	5069154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:5069154C>T	uc010mhm.2	+	10	1572	c.1459C>T	c.(1459-1461)CGC>TGC	p.R487C	JAK2_uc003ziw.2_Missense_Mutation_p.R487C	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	487					actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		GGAAACTGTTCGCTCAGACAA	0.338		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				26	46					0	0	1	0	0
JAK2	3717	broad.mit.edu	37	9	5072529	5072529	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:5072529T>C	uc010mhm.2	+	12	1792	c.1679T>C	c.(1678-1680)TTT>TCT	p.F560S	JAK2_uc003ziw.2_Missense_Mutation_p.F560S	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	560	Protein kinase 1.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		ACAAAGATTTTTAAAGGCGTA	0.373		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				25	53					0	0	1	0	0
INSL6	11172	broad.mit.edu	37	9	5185414	5185414	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:5185414C>T	uc003zix.2	-	1	205	c.189G>A	c.(187-189)CGG>CGA	p.R63R		NM_007179	NP_009110	Q9Y581	INSL6_HUMAN	insulin-like 6 precursor	63						extracellular region	hormone activity				0	all_hematologic(13;0.137)	Breast(48;0.147)|Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0128)|Lung(218;0.145)		GTGCAATCAACCGTGAGAAAG	0.572													48	86					0	0	1	0	0
RLN1	6013	broad.mit.edu	37	9	5335409	5335409	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:5335409G>A	uc003zjb.1	-	2	527	c.400C>T	c.(400-402)CGC>TGC	p.R134C		NM_006911	NP_008842	P04808	REL1_HUMAN	relaxin 1 preproprotein	134					female pregnancy|signal transduction	extracellular region	hormone activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.02)|Lung(218;0.0984)		TGCCTATTGCGAATAAGTTTC	0.408													41	88					0	0	1	0	0
CD274	29126	broad.mit.edu	37	9	5457416	5457416	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:5457416C>T	uc003zje.2	+	3	442	c.390C>T	c.(388-390)GTC>GTT	p.V130V	C9orf46_uc003zjd.2_Intron|CD274_uc011lmb.1_Silent_p.V130V|CD274_uc010mhn.2_RNA|CD274_uc003zjf.2_Intron	NM_014143	NP_054862	Q9NZQ7	PD1L1_HUMAN	CD274 molecule precursor	130	Extracellular (Potential).				cell proliferation|cell surface receptor linked signaling pathway|immune response|T cell costimulation	endomembrane system|integral to membrane	receptor activity			lung(1)|central_nervous_system(1)	2	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000742)|Lung(218;0.111)		CTGTGAAAGTCAATGGTAAGA	0.393			T	CIITA	PMBL|Hodgkin Lymphona|								4	31					0	0	1	0	0
RANBP6	26953	broad.mit.edu	37	9	6012345	6012345	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:6012345G>A	uc003zjr.2	-	1	3274	c.3263C>T	c.(3262-3264)TCA>TTA	p.S1088L	RANBP6_uc011lmf.1_Missense_Mutation_p.S736L|RANBP6_uc003zjs.2_Missense_Mutation_p.S676L	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	1088					protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		ATCAAGTTGTGATACACATTC	0.353													13	58					0	0	1	0	0
RANBP6	26953	broad.mit.edu	37	9	6013256	6013256	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:6013256G>A	uc003zjr.2	-	1	2363	c.2352C>T	c.(2350-2352)TCC>TCT	p.S784S	RANBP6_uc011lmf.1_Silent_p.S432S|RANBP6_uc003zjs.2_Silent_p.S372S	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	784					protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		TAACTTCAATGGACTTTGCAA	0.388													66	81					0	0	1	0	0
TPD52L3	89882	broad.mit.edu	37	9	6328916	6328916	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:6328916G>A	uc003zjw.2	+	1	542	c.321G>A	c.(319-321)AGG>AGA	p.R107R	TPD52L3_uc003zjv.2_Silent_p.R107R|TPD52L3_uc003zjx.1_Silent_p.R107R	NM_033516	NP_277051	Q96J77	TPD55_HUMAN	protein kinase NYD-SP25 isoform 1	107							protein binding				0		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0198)|Lung(218;0.1)		TCATCTGCAGGAAGCTTGGAG	0.507													30	52					0	0	1	0	0
GLDC	2731	broad.mit.edu	37	9	6587206	6587206	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:6587206G>A	uc003zkc.2	-	15	1978	c.1785C>T	c.(1783-1785)TTC>TTT	p.F595F		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	595					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CAAGCTCTCGGAAAAGCTGCT	0.388													35	62					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8331622	8331622	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8331622C>T	uc003zkk.2	-	43	6205	c.5494G>A	c.(5494-5496)GAA>AAA	p.E1832K	PTPRD_uc003zkp.2_Missense_Mutation_p.E1426K|PTPRD_uc003zkq.2_Missense_Mutation_p.E1425K|PTPRD_uc003zkr.2_Missense_Mutation_p.E1416K|PTPRD_uc003zks.2_Missense_Mutation_p.E1425K|PTPRD_uc003zkl.2_Missense_Mutation_p.E1823K|PTPRD_uc003zkm.2_Missense_Mutation_p.E1819K|PTPRD_uc003zkn.2_Missense_Mutation_p.E1421K|PTPRD_uc003zko.2_Missense_Mutation_p.E1422K	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1832	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CCAAACTGTTCTTTTGTTTTA	0.433										TSP Lung(15;0.13)			33	63					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8404586	8404586	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8404586C>T	uc003zkk.2	-	35	4872	c.4161G>A	c.(4159-4161)GCG>GCA	p.A1387A	PTPRD_uc003zkp.2_Silent_p.A981A|PTPRD_uc003zkq.2_Silent_p.A980A|PTPRD_uc003zkr.2_Silent_p.A971A|PTPRD_uc003zks.2_Silent_p.A980A|PTPRD_uc003zkl.2_Silent_p.A1378A|PTPRD_uc003zkm.2_Silent_p.A1374A|PTPRD_uc003zkn.2_Silent_p.A976A|PTPRD_uc003zko.2_Silent_p.A977A	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1387	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CGATTACATTCGCGTATCTAT	0.378										TSP Lung(15;0.13)			13	42					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8449744	8449744	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8449744G>A	uc003zkk.2	-	33	4680	c.3969C>T	c.(3967-3969)CGC>CGT	p.R1323R	PTPRD_uc003zkp.2_Silent_p.R917R|PTPRD_uc003zkq.2_Silent_p.R916R|PTPRD_uc003zkr.2_Silent_p.R907R|PTPRD_uc003zks.2_Silent_p.R902R|PTPRD_uc003zkl.2_Silent_p.R1314R|PTPRD_uc003zkm.2_Silent_p.R1310R|PTPRD_uc003zkn.2_Silent_p.R912R|PTPRD_uc003zko.2_Silent_p.R913R	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1323	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GAAAGTTAAGGCGCCTCAGTT	0.453										TSP Lung(15;0.13)			16	126					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8471043	8471043	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8471043C>T	uc003zkk.2	-	30	4167	c.3456G>A	c.(3454-3456)GGG>GGA	p.G1152G	PTPRD_uc003zkp.2_Silent_p.G741G|PTPRD_uc003zkq.2_Silent_p.G741G|PTPRD_uc003zkr.2_Silent_p.G736G|PTPRD_uc003zks.2_Silent_p.G731G|PTPRD_uc003zkl.2_Silent_p.G1143G|PTPRD_uc003zkm.2_Silent_p.G1139G|PTPRD_uc003zkn.2_Silent_p.G741G|PTPRD_uc003zko.2_Silent_p.G738G	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1152	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TGATAAATTTCCCGCGAGATT	0.368										TSP Lung(15;0.13)			13	121					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8485972	8485972	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8485972C>T	uc003zkk.2	-	27	3556	c.2845G>A	c.(2845-2847)GGC>AGC	p.G949S	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.G940S|PTPRD_uc003zkm.2_Missense_Mutation_p.G936S|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	949	Fibronectin type-III 7.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTGATAATGCCATTTCTCTCT	0.478										TSP Lung(15;0.13)			10	91					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8486138	8486138	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8486138G>A	uc003zkk.2	-	27	3390	c.2679C>T	c.(2677-2679)TTC>TTT	p.F893F	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Silent_p.F884F|PTPRD_uc003zkm.2_Silent_p.F880F|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	893	Fibronectin type-III 6.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CTGAGAGCCTGAAGACGTATG	0.463										TSP Lung(15;0.13)			27	34					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8492966	8492966	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8492966G>A	uc003zkk.2	-	26	3074	c.2363C>T	c.(2362-2364)TCT>TTT	p.S788F	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.S779F|PTPRD_uc003zkm.2_Missense_Mutation_p.S775F|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	788	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CTGGAGCCCAGAAATGATCAT	0.493										TSP Lung(15;0.13)			8	77					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8499829	8499829	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8499829G>A	uc003zkk.2	-	24	2851	c.2140C>T	c.(2140-2142)CCT>TCT	p.P714S	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.P714S|PTPRD_uc003zkm.2_Missense_Mutation_p.P701S|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	714	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TTGCGAGGAGGACCACTAGGA	0.443										TSP Lung(15;0.13)			8	61					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8500760	8500760	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8500760C>T	uc003zkk.2	-	23	2833	c.2122G>A	c.(2122-2124)GAA>AAA	p.E708K	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.E708K|PTPRD_uc003zkm.2_Missense_Mutation_p.E695K|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	708	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		ATACCATCTTCATTGGTTCGA	0.488										TSP Lung(15;0.13)			37	60					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8500768	8500768	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8500768C>T	uc003zkk.2	-	23	2825	c.2114G>A	c.(2113-2115)CGA>CAA	p.R705Q	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.R705Q|PTPRD_uc003zkm.2_Missense_Mutation_p.R692Q|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	705	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TTCATTGGTTCGAATCAACAC	0.473										TSP Lung(15;0.13)			41	64					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8518118	8518118	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8518118G>A	uc003zkk.2	-	20	1984	c.1273C>T	c.(1273-1275)CAG>TAG	p.Q425*	PTPRD_uc003zkp.2_Nonsense_Mutation_p.Q425*|PTPRD_uc003zkq.2_Nonsense_Mutation_p.Q425*|PTPRD_uc003zkr.2_Nonsense_Mutation_p.Q419*|PTPRD_uc003zks.2_Nonsense_Mutation_p.Q415*|PTPRD_uc003zkl.2_Nonsense_Mutation_p.Q425*|PTPRD_uc003zkm.2_Nonsense_Mutation_p.Q412*|PTPRD_uc003zkn.2_Nonsense_Mutation_p.Q425*|PTPRD_uc003zko.2_Nonsense_Mutation_p.Q422*	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	425	Fibronectin type-III 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		ATTCGTGCCTGGACATCCCTC	0.502										TSP Lung(15;0.13)			55	93					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8521544	8521544	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8521544G>A	uc003zkk.2	-	19	1405	c.694C>T	c.(694-696)CGC>TGC	p.R232C	PTPRD_uc003zkp.2_Missense_Mutation_p.R232C|PTPRD_uc003zkq.2_Missense_Mutation_p.R232C|PTPRD_uc003zkr.2_Missense_Mutation_p.R226C|PTPRD_uc003zks.2_Missense_Mutation_p.R222C|PTPRD_uc003zkl.2_Missense_Mutation_p.R232C|PTPRD_uc003zkm.2_Missense_Mutation_p.R219C|PTPRD_uc003zkn.2_Missense_Mutation_p.R232C|PTPRD_uc003zko.2_Missense_Mutation_p.R229C	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	232	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GGGACACGGCGAACTGGAACA	0.448										TSP Lung(15;0.13)			29	71					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8528672	8528672	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:8528672C>T	uc003zkk.2	-	14	1171	c.460G>A	c.(460-462)GAT>AAT	p.D154N	PTPRD_uc003zkp.2_Missense_Mutation_p.D154N|PTPRD_uc003zkq.2_Missense_Mutation_p.D154N|PTPRD_uc003zkr.2_Missense_Mutation_p.D154N|PTPRD_uc003zks.2_Missense_Mutation_p.D154N|PTPRD_uc003zkl.2_Missense_Mutation_p.D154N|PTPRD_uc003zkm.2_Missense_Mutation_p.D154N|PTPRD_uc003zkn.2_Missense_Mutation_p.D154N|PTPRD_uc003zko.2_Missense_Mutation_p.D154N|PTPRD_uc003zkt.1_Missense_Mutation_p.D154N	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	154	Extracellular (Potential).|Ig-like C2-type 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity	p.D154Y(1)		lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		ATTTCTGGATCCGGATTACCA	0.483										TSP Lung(15;0.13)			15	139					0	0	1	0	0
MPDZ	8777	broad.mit.edu	37	9	13107074	13107074	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:13107074C>T	uc010mhy.2	-	45	6067	c.6016G>A	c.(6016-6018)GAT>AAT	p.D2006N	MPDZ_uc003zkx.3_Missense_Mutation_p.D230N|MPDZ_uc003zky.3_Missense_Mutation_p.D569N|MPDZ_uc010mib.2_Missense_Mutation_p.D740N|MPDZ_uc010mhx.2_Missense_Mutation_p.D857N|MPDZ_uc011lmm.1_Missense_Mutation_p.D894N|MPDZ_uc003zkz.3_Missense_Mutation_p.D728N|MPDZ_uc010mhz.2_Missense_Mutation_p.D2002N|MPDZ_uc011lmn.1_Missense_Mutation_p.D1973N|MPDZ_uc003zlb.3_Missense_Mutation_p.D2006N	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	2035	PDZ 13.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		ATGATCTGATCGCCCCTTTTC	0.448													22	138					0	0	1	0	0
MPDZ	8777	broad.mit.edu	37	9	13112081	13112081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:13112081G>A	uc010mhy.2	-	41	5630	c.5579C>T	c.(5578-5580)CCT>CTT	p.P1860L	MPDZ_uc003zkx.3_Intron|MPDZ_uc003zky.3_Missense_Mutation_p.P423L|MPDZ_uc010mib.2_Missense_Mutation_p.P594L|MPDZ_uc010mhx.2_Missense_Mutation_p.P711L|MPDZ_uc011lmm.1_Missense_Mutation_p.P748L|MPDZ_uc003zkz.3_Missense_Mutation_p.P582L|MPDZ_uc010mhz.2_Missense_Mutation_p.P1856L|MPDZ_uc011lmn.1_Missense_Mutation_p.P1827L|MPDZ_uc003zlb.3_Missense_Mutation_p.P1860L	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1889	PDZ 12.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		AATAAATATAGGCACATCACC	0.473													14	23					0	0	1	0	0
MPDZ	8777	broad.mit.edu	37	9	13125237	13125237	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:13125237G>A	uc010mia.1	-	34	4842	c.4785C>T	c.(4783-4785)TCC>TCT	p.S1595S	MPDZ_uc003zky.3_Silent_p.S157S|MPDZ_uc010mib.2_Silent_p.S300S|MPDZ_uc010mhx.2_Silent_p.S417S|MPDZ_uc011lmm.1_Silent_p.S454S|MPDZ_uc003zkz.3_Silent_p.S288S|MPDZ_uc010mhy.2_Silent_p.S1595S|MPDZ_uc010mhz.2_Silent_p.S1562S|MPDZ_uc011lmn.1_Silent_p.S1562S|MPDZ_uc003zlb.3_Silent_p.S1595S	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1595					interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		CCGGTTCTGGGGAGCCAGACT	0.547													24	47					0	0	1	0	0
MPDZ	8777	broad.mit.edu	37	9	13150667	13150667	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:13150667G>A	uc010mia.1	-	24	3530	c.3473C>T	c.(3472-3474)CCA>CTA	p.P1158L	MPDZ_uc010mhx.2_Missense_Mutation_p.P50L|MPDZ_uc011lmm.1_Missense_Mutation_p.P50L|MPDZ_uc003zkz.3_Intron|MPDZ_uc010mhy.2_Missense_Mutation_p.P1158L|MPDZ_uc010mhz.2_Missense_Mutation_p.P1158L|MPDZ_uc011lmn.1_Missense_Mutation_p.P1158L|MPDZ_uc003zlb.3_Missense_Mutation_p.P1158L	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1158	PDZ 7.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		GGATTTGCTTGGTTCTCTCCA	0.308													15	34					0	0	1	0	0
MPDZ	8777	broad.mit.edu	37	9	13183510	13183510	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:13183510G>A	uc010mia.1	-	18	2613	c.2556C>T	c.(2554-2556)ATC>ATT	p.I852I	MPDZ_uc010mhy.2_Silent_p.I852I|MPDZ_uc010mhz.2_Silent_p.I852I|MPDZ_uc011lmn.1_Silent_p.I852I|MPDZ_uc003zlb.3_Silent_p.I852I	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	852					interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		GAGTAGAGTAGATGCTGTCAT	0.403													5	27					0	0	1	0	0
CER1	9350	broad.mit.edu	37	9	14722227	14722227	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14722227G>A	uc003zlj.2	-	1	489	c.444C>T	c.(442-444)GTC>GTT	p.V148V		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	148					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		TGGGCAAGATGACCCCCTGAG	0.493													9	79					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14747004	14747004	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14747004C>T	uc003zlm.2	-	34	6645	c.6055G>A	c.(6055-6057)GGA>AGA	p.G2019R	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.G555R	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	2019					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TGGAAGAGTCCCTTTAATTCC	0.468													6	23					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14747289	14747289	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14747289G>A	uc003zlm.2	-	33	6572	c.5982C>T	c.(5980-5982)TCC>TCT	p.S1994S	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Silent_p.S530S	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1994					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AGTCAGTTGTGGATTCCACCT	0.423													39	131					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14748569	14748569	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14748569G>A	uc003zlm.2	-	31	6216	c.5626C>T	c.(5626-5628)CTG>TTG	p.L1876L	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_Intron|FREM1_uc003zll.2_Silent_p.L412L	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1876					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GGGGGCAGCAGATGCCAAATG	0.527													51	164					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14769773	14769773	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14769773G>A	uc003zlm.2	-	27	5743	c.5153C>T	c.(5152-5154)ACC>ATC	p.T1718I	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.T254I	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1718	CSPG 12.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AAATTCCACGGTATCTGAATT	0.353													15	12					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14775943	14775943	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14775943G>A	uc003zlm.2	-	25	5291	c.4701C>T	c.(4699-4701)TTC>TTT	p.F1567F	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_5'Flank|FREM1_uc003zll.2_Silent_p.F103F	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1567	CSPG 11.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CCTGCTGGGTGAAATTGTGTT	0.557													13	122					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14801670	14801670	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14801670G>A	uc003zlm.2	-	20	4264	c.3674C>T	c.(3673-3675)TCC>TTC	p.S1225F	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1225	CSPG 8.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GAGTTCCATGGAAAAGCTGTG	0.398													11	25					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14806731	14806731	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14806731G>A	uc003zlm.2	-	18	3792	c.3202C>T	c.(3202-3204)CCT>TCT	p.P1068S	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1068	CSPG 7.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CCAAACTGAGGAGGAGAAACC	0.448													3	14					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14812856	14812856	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14812856G>A	uc003zlm.2	-	16	3437	c.2847C>T	c.(2845-2847)TTC>TTT	p.F949F	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	949	CSPG 6.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTCTCTGAGAGAACTGATCCA	0.498													25	172					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14812906	14812906	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14812906C>T	uc003zlm.2	-	16	3387	c.2797G>A	c.(2797-2799)GAA>AAA	p.E933K	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	933	CSPG 6.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TGCTGAGGTTCGCGAGCAATC	0.478													72	136					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14819258	14819258	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14819258C>T	uc003zlm.2	-	14	3110	c.2520G>A	c.(2518-2520)TGG>TGA	p.W840*	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	840	CSPG 5.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GGAGATCGCCCCAAGAAAATG	0.428													16	30					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14819293	14819293	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14819293C>T	uc003zlm.2	-	14	3075	c.2485G>A	c.(2485-2487)GGA>AGA	p.G829R	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	829	CSPG 5.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AGAGGAAATCCATTCAGCTCC	0.433													6	43					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14823176	14823176	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14823176C>T	uc003zlm.2	-	13	2909	c.2319G>A	c.(2317-2319)GTG>GTA	p.V773V	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	773	CSPG 5.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTTGATTGTCCACTGGGAGGA	0.413													7	56					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14841576	14841576	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14841576G>A	uc003zlm.2	-	10	2340	c.1750C>T	c.(1750-1752)CAT>TAT	p.H584Y	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	584	CSPG 3.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AGGAAGCCATGGACAGGATAG	0.368													51	94					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14857646	14857646	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14857646G>A	uc003zlm.2	-	5	1323	c.733C>T	c.(733-735)CTT>TTT	p.L245F	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	245					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TGATAACGAAGGCCCATCAGC	0.473													32	61					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14857684	14857684	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14857684C>T	uc003zlm.2	-	5	1285	c.695G>A	c.(694-696)AGC>AAC	p.S232N	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	232					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CACTTTGAGGCTTCCTATTTT	0.463													8	48					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14859437	14859437	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14859437G>A	uc003zlm.2	-	4	965	c.375C>T	c.(373-375)GTC>GTT	p.V125V	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	125					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CCAGGAGATAGACCCACAGGA	0.403													60	107					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14868871	14868871	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:14868871C>T	uc003zlm.2	-	2	695	c.105G>A	c.(103-105)ATG>ATA	p.M35I	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	35					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AGTGGCCCTTCATCACCCTCA	0.562													7	11					0	0	1	0	0
TTC39B	158219	broad.mit.edu	37	9	15185362	15185362	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:15185362G>A	uc003zlr.1	-	16	1453	c.1332C>T	c.(1330-1332)ATC>ATT	p.I444I	TTC39B_uc003zlq.1_Silent_p.I413I|TTC39B_uc011lmp.1_Silent_p.I345I|TTC39B_uc010mie.1_Silent_p.I442I|TTC39B_uc011lmq.1_Silent_p.I431I|TTC39B_uc011lmr.1_Silent_p.I375I|TTC39B_uc003zlp.1_Silent_p.I27I	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B	444							binding			ovary(1)	1						TCTCAGTAGGGATAGATTTCC	0.502													34	73					0	0	1	0	0
TTC39B	158219	broad.mit.edu	37	9	15203859	15203859	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:15203859C>T	uc003zlr.1	-	7	644	c.523G>A	c.(523-525)GAG>AAG	p.E175K	TTC39B_uc003zlq.1_Missense_Mutation_p.E144K|TTC39B_uc011lmp.1_Missense_Mutation_p.E76K|TTC39B_uc010mie.1_Missense_Mutation_p.E173K|TTC39B_uc011lmq.1_Missense_Mutation_p.E175K|TTC39B_uc011lmr.1_Missense_Mutation_p.E106K|TTC39B_uc010mif.1_Missense_Mutation_p.E175K|TTC39B_uc003zls.1_Missense_Mutation_p.E76K|TTC39B_uc010mig.1_Missense_Mutation_p.E144K|TTC39B_uc011lms.1_RNA	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B	175							binding			ovary(1)	1						AGGAGACACTCGGCATAACAG	0.388													11	27					0	0	1	0	0
CNTLN	54875	broad.mit.edu	37	9	17332635	17332635	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:17332635C>T	uc003zmz.2	+	10	1577	c.1551C>T	c.(1549-1551)TCC>TCT	p.S517S	CNTLN_uc003zmy.2_Silent_p.S517S|CNTLN_uc010mio.2_Silent_p.S196S	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	517						centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		GGTCTTTGTCCCCAAAGAGCT	0.398													31	58					0	0	1	0	0
SH3GL2	6456	broad.mit.edu	37	9	17787380	17787380	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:17787380C>T	uc003zna.2	+	5	622	c.334C>T	c.(334-336)CCA>TCA	p.P112S	SH3GL2_uc011lmx.1_Missense_Mutation_p.P77S|SH3GL2_uc011lmy.1_Missense_Mutation_p.P65S	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	112	BAR.|Binds and tubulates liposomes (By similarity).				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		TCTCCTAGGCCCAGCACTTGG	0.468													13	131					0	0	1	0	0
SH3GL2	6456	broad.mit.edu	37	9	17789545	17789545	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:17789545G>A	uc003zna.2	+	6	909	c.621G>A	c.(619-621)ATG>ATA	p.M207I	SH3GL2_uc011lmx.1_Missense_Mutation_p.M172I|SH3GL2_uc011lmy.1_Missense_Mutation_p.M160I	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	207	BAR.|Potential.				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		TCTTGGAGATGGATGTAAGTG	0.373													11	72					0	0	1	0	0
SH3GL2	6456	broad.mit.edu	37	9	17791332	17791332	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:17791332G>A	uc003zna.2	+	7	1016	c.728G>A	c.(727-729)AGA>AAA	p.R243K	SH3GL2_uc011lmy.1_Missense_Mutation_p.R196K	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	243	BAR.|Potential.				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		CTGGAAGAAAGGTATTCTACA	0.428													5	71					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18657708	18657708	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18657708G>A	uc003zne.3	+	8	1033	c.906G>A	c.(904-906)AGG>AGA	p.R302R	ADAMTSL1_uc003znb.2_Silent_p.R302R|ADAMTSL1_uc003znc.3_Silent_p.R302R	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	302						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		ACCGATGGAGGGAGACGGATT	0.463													8	38					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18657714	18657714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18657714G>A	uc003zne.3	+	8	1039	c.912G>A	c.(910-912)ACG>ACA	p.T304T	ADAMTSL1_uc003znb.2_Silent_p.T304T|ADAMTSL1_uc003znc.3_Silent_p.T304T	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	304						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GGAGGGAGACGGATTTCTTTC	0.463													7	36					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18753417	18753417	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18753417G>A	uc003zne.3	+	16	2255	c.2128G>A	c.(2128-2130)GAG>AAG	p.E710K		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	710	TSP type-1 6.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CCTGGCTGATGAGCTGTGTCG	0.567													8	13					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18753478	18753478	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18753478C>T	uc003zne.3	+	16	2316	c.2189C>T	c.(2188-2190)CCA>CTA	p.P730L		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	730						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		AATTGCCCCCCAGCCTGGTAC	0.512													6	15					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18770674	18770674	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18770674C>T	uc003zne.3	+	17	2419	c.2292C>T	c.(2290-2292)TTC>TTT	p.F764F		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	764						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		ATGGCAGCTTCCTGGAGCTTC	0.527													6	25					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18770762	18770762	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18770762C>T	uc003zne.3	+	17	2507	c.2380C>T	c.(2380-2382)CTC>TTC	p.L794F		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	794	TSP type-1 7.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CGAGTGGCTTCTCTCAGACTG	0.483													14	17					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18776967	18776967	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18776967G>A	uc003zne.3	+	19	2867	c.2740G>A	c.(2740-2742)GAC>AAC	p.D914N		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	914	Ig-like C2-type 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CTGGGAGAAGGACGGCCAGCA	0.677													6	47					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18777014	18777014	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18777014C>T	uc003zne.3	+	19	2914	c.2787C>T	c.(2785-2787)TTC>TTT	p.F929F		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	929	Ig-like C2-type 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		TGGCCCCCTTCGGCTATCTCA	0.662													23	56					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18777046	18777046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18777046C>T	uc003zne.3	+	19	2946	c.2819C>T	c.(2818-2820)TCG>TTG	p.S940L		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	940	Ig-like C2-type 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CTCAAGCCCTCGGATGCAGGC	0.652													12	82					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18829902	18829902	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18829902G>A	uc003zne.3	+	23	4303	c.4176G>A	c.(4174-4176)CCG>CCA	p.P1392P	ADAMTSL1_uc003znf.3_Silent_p.P93P	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1392						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CCACTGGACCGAACCTTCCTT	0.567													13	27					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18889628	18889628	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18889628C>T	uc003zne.3	+	25	4652	c.4525C>T	c.(4525-4527)CAG>TAG	p.Q1509*	ADAMTSL1_uc003znf.3_Nonsense_Mutation_p.Q210*	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1509						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CCGGGGGGTTCAGCAGCCCCG	0.607													5	31					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18892399	18892399	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:18892399C>T	uc003zne.3	+	26	4783	c.4656C>T	c.(4654-4656)ACC>ACT	p.T1552T	ADAMTSL1_uc003znf.3_Silent_p.T253T	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1552	TSP type-1 8.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GGATGGTGACCTCCTGGTCTG	0.612													6	10					0	0	1	0	0
DENND4C	55667	broad.mit.edu	37	9	19350783	19350783	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:19350783C>T	uc003znq.2	+	19	3579	c.3546C>T	c.(3544-3546)ATC>ATT	p.I1182I	DENND4C_uc011lnc.1_Silent_p.I512I|DENND4C_uc011lnd.1_Silent_p.I470I|DENND4C_uc003znr.2_Silent_p.I470I|DENND4C_uc003zns.2_Silent_p.I364I|DENND4C_uc003znt.2_Silent_p.I364I	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	1182						integral to membrane				ovary(1)|skin(1)	2						ACACAAGTATCTCAGGGTTGG	0.433													18	83					0	0	1	0	0
SLC24A2	25769	broad.mit.edu	37	9	19516253	19516253	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:19516253C>T	uc003zoa.1	-	10	1946	c.1884G>A	c.(1882-1884)ATG>ATA	p.M628I	SLC24A2_uc003zob.1_Missense_Mutation_p.M611I	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	628	Extracellular (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		GGATTTTGTTCATTCGCCACT	0.502													60	88					0	0	1	0	0
SLC24A2	25769	broad.mit.edu	37	9	19576956	19576956	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:19576956C>T	uc003zoa.1	-	5	1256	c.1194G>A	c.(1192-1194)GAG>GAA	p.E398E	SLC24A2_uc003zob.1_Silent_p.E381E	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	398	Cytoplasmic (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		GCCTCTCGTTCTCATCCACAT	0.522													50	77					0	0	1	0	0
SLC24A2	25769	broad.mit.edu	37	9	19786502	19786502	+	Silent	SNP	C	T	T	rs144667976		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:19786502C>T	uc003zoa.1	-	1	425	c.363G>A	c.(361-363)CCG>CCA	p.P121P	SLC24A2_uc003zob.1_Silent_p.P121P	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	121	Extracellular (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		AGATGTCTTTCGGGTAGTCTC	0.428													9	92					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414089	20414089	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:20414089G>A	uc003zoe.2	-	5	1014	c.755C>T	c.(754-756)GCC>GTC	p.A252V	MLLT3_uc011lne.1_Missense_Mutation_p.A220V|MLLT3_uc011lnf.1_Missense_Mutation_p.A249V|MLLT3_uc003zof.2_Missense_Mutation_p.A53V	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	252					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		TTCCTTGAAGGCCATCTTAGG	0.403			T	MLL	ALL								108	211					0	0	1	0	0
MIR491	574444	broad.mit.edu	37	9	20716129	20716129	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:20716129C>T	hsa-mir-491|MI0003126	+			c.26C>T			KIAA1797_uc003zog.1_Intron																	0						AGTGGGGAACCCTTCCATGAG	0.453													7	58					0	0	1	0	0
KIAA1797	54914	broad.mit.edu	37	9	20976437	20976437	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:20976437C>T	uc003zog.1	+	38	4514	c.4151C>T	c.(4150-4152)CCT>CTT	p.P1384L	KIAA1797_uc003zoh.1_Missense_Mutation_p.P820L	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1384						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		TCTGTGCCTCCTTCCCTTCTT	0.418													25	245					0	0	1	0	0
IFNW1	3467	broad.mit.edu	37	9	21141378	21141378	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21141378C>T	uc003zol.1	-	1	767	c.192G>A	c.(190-192)GAG>GAA	p.E64E		NM_002177	NP_002168	P05000	IFNW1_HUMAN	interferon, omega 1 precursor	64					cell cycle arrest|defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0				GBM - Glioblastoma multiforme(5;2.35e-185)|Lung(24;2.24e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CTTTTACCATCTCCTGGGGGA	0.527													48	77					0	0	1	0	0
IFNA21	3452	broad.mit.edu	37	9	21166096	21166096	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21166096C>T	uc003zom.2	-	1	564	c.516G>A	c.(514-516)ATG>ATA	p.M172I		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	172					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AGAAGGATCTCATGATTTCTG	0.383													33	314					0	0	1	0	0
IFNA21	3452	broad.mit.edu	37	9	21166595	21166595	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21166595G>A	uc003zom.2	-	1	65	c.17C>T	c.(16-18)TCT>TTT	p.S6F		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	6					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CATCAGTAAAGAAAAGGACAG	0.498													25	65					0	0	1	0	0
IFNA7	3444	broad.mit.edu	37	9	21201647	21201647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21201647C>T	uc003zop.1	-	1	558	c.518G>A	c.(517-519)AGA>AAA	p.R173K	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	173					blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AGAGAAGGATCTCATGATTTC	0.388													153	244					0	0	1	0	0
IFNA7	3444	broad.mit.edu	37	9	21201733	21201733	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21201733C>T	uc003zop.1	-	1	472	c.432G>A	c.(430-432)AGG>AGA	p.R144R	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	144					blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GGAAGTATTTCCTCACAGCCA	0.448													47	337					0	0	1	0	0
IFNA10	3446	broad.mit.edu	37	9	21206699	21206699	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21206699G>A	uc003zoq.1	-	1	444	c.398C>T	c.(397-399)CCC>CTC	p.P133L	IFNA14_uc003zoo.1_Intron	NM_002171	NP_002162	P01566	IFN10_HUMAN	interferon, alpha 10 precursor	133					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.17)		ATTCATCAGGGGAGTCTCTTC	0.463													53	153					0	0	1	0	0
IFNA10	3446	broad.mit.edu	37	9	21207021	21207021	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21207021G>A	uc003zoq.1	-	1	122	c.76C>T	c.(76-78)CTG>TTG	p.L26L	IFNA14_uc003zoo.1_Intron	NM_002171	NP_002162	P01566	IFN10_HUMAN	interferon, alpha 10 precursor	26					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.17)		GTCTGAGGCAGATCACAGCCT	0.493													10	87					0	0	1	0	0
IFNA16	3449	broad.mit.edu	37	9	21216784	21216784	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21216784G>A	uc003zor.1	-	1	527	c.521C>T	c.(520-522)TCC>TTC	p.S174F	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	174					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		AAAAGAGAAGGATCTCATGAT	0.383													144	244					0	0	1	0	0
IFNA16	3449	broad.mit.edu	37	9	21216837	21216837	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21216837C>T	uc003zor.1	-	1	474	c.468G>A	c.(466-468)GGG>GGA	p.G156G	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	156					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TGTATTTCTTCCCCATCAGAT	0.438													44	403					0	0	1	0	0
IFNA16	3449	broad.mit.edu	37	9	21216896	21216896	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21216896C>T	uc003zor.1	-	1	415	c.409G>A	c.(409-411)GAG>AAG	p.E137K	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	137					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		ATGGAGTCCTCATTCATCAGG	0.468													31	294					0	0	1	0	0
IFNA16	3449	broad.mit.edu	37	9	21217065	21217065	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21217065G>A	uc003zor.1	-	1	246	c.240C>T	c.(238-240)TTC>TTT	p.F80F	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	80					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TCATCTCATGGAAGGCAGAGA	0.473													61	119					0	0	1	0	0
IFNA16	3449	broad.mit.edu	37	9	21217225	21217225	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21217225G>A	uc003zor.1	-	1	86	c.80C>T	c.(79-81)CCT>CTT	p.P27L	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	27					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		GTGAGTCTGAGGCAGATCACA	0.488													30	113					0	0	1	0	0
IFNA17	3451	broad.mit.edu	37	9	21227932	21227932	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21227932G>A	uc003zos.1	-	1	290	c.241C>T	c.(241-243)CAT>TAT	p.H81Y	IFNA14_uc003zoo.1_Intron	NM_021268	NP_067091	P01571	IFN17_HUMAN	interferon, alpha 17 precursor	81					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				Lung(24;2.13e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		ATCATCTCATGGAGGACAGAG	0.488													51	111					0	0	1	0	0
IFNA14	3448	broad.mit.edu	37	9	21239413	21239414	+	Missense_Mutation	DNP	GG	AA	AA	rs146172550	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21239413_21239414GG>AA	uc010mis.2	-	1	565_566	c.521_522CC>TT	c.(520-522)TCC>TTT	p.S174F	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	174					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AAAAAGAGAGGGATCTCATGAT	0.391													99	357					0	0	1	0	0
IFNA14	3448	broad.mit.edu	37	9	21239489	21239489	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21239489C>T	uc010mis.2	-	1	490	c.446G>A	c.(445-447)AGA>AAA	p.R149K	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	149					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AAGAGTGATTCTTTGGAAGTA	0.458													136	307					0	0	1	0	0
IFNA14	3448	broad.mit.edu	37	9	21239751	21239751	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21239751G>A	uc010mis.2	-	1	228	c.184C>T	c.(184-186)CCC>TCC	p.P62S	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	62					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		TCCTCCTGGGGAAATTCAAAG	0.468													67	106					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	21278221	21278221	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21278221G>A	uc003zou.1	-	1		c.342C>T								Messenger RNA for human leukocyte (alpha) interferon.																		ATTCCTCAGGGGAGTCTCTTC	0.458													20	192					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	21278379	21278379	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21278379G>A	uc003zou.1	-	1		c.184C>T								Messenger RNA for human leukocyte (alpha) interferon.																		TCATCTCATGGAAAAGGAAGA	0.423													13	33					0	0	1	0	0
IFNA6	3443	broad.mit.edu	37	9	21350466	21350466	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21350466G>A	uc011lni.1	-	1	421	c.421C>T	c.(421-423)CTG>TTG	p.L141L		NM_021002	NP_066282	P05013	IFNA6_HUMAN	interferon, alpha 6 precursor	141					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		CTCACAGCCAGGATGGAGTCC	0.493													46	335					0	0	1	0	0
IFNA2	3440	broad.mit.edu	37	9	21384900	21384900	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21384900C>T	uc003zpb.2	-	1	497	c.429G>A	c.(427-429)AGG>AGA	p.R143R		NM_000605	NP_000596	P01563	IFNA2_HUMAN	interferon, alpha 2 precursor	143					blood coagulation|cell-cell signaling|induction of apoptosis|inflammatory response|negative regulation of interleukin-13 secretion|negative regulation of interleukin-5 secretion|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of transcription, DNA-dependent|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			breast(1)	1				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.0173)	Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	GGAAGTATTTCCTCACAGCCA	0.478													103	213					0	0	1	0	0
LOC554202	554202	broad.mit.edu	37	9	21455665	21455665	+	RNA	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21455665C>A	uc003zpe.2	-	4		c.750G>T			LOC554202_uc003zpf.2_RNA	NR_027054				Homo sapiens cDNA FLJ42400 fis, clone ASTRO2003581.												0						ACTTCAGATTCCCCCAGGAGA	0.502													10	14					7.48243e-07	7.49749e-07	1	1	0
MTAP	4507	broad.mit.edu	37	9	21854633	21854633	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21854633C>T	uc003zph.2	+	6	567	c.454C>T	c.(454-456)CTT>TTT	p.L152F	MTAP_uc003zpi.1_Intron|MTAP_uc010mit.2_RNA|MTAP_uc011lnk.1_Missense_Mutation_p.L169F|MTAP_uc011lnl.1_Missense_Mutation_p.L85F	NM_002451	NP_002442	Q13126	MTAP_HUMAN	5'-methylthioadenosine phosphorylase	152					nucleoside metabolic process	cytoplasm	phosphorylase activity|S-methyl-5-thioadenosine phosphorylase activity			central_nervous_system(1)	1		all_cancers(5;0)|Hepatocellular(5;0.00162)|Colorectal(97;0.173)		GBM - Glioblastoma multiforme(3;0)|Lung(24;2.24e-57)|LUSC - Lung squamous cell carcinoma(38;1.97e-36)|STAD - Stomach adenocarcinoma(4;3.26e-05)|OV - Ovarian serous cystadenocarcinoma(39;0.00931)|COAD - Colon adenocarcinoma(8;0.15)	Adenine(DB00173)	TTTCTAGGTTCTTATAGAGAC	0.443													11	91					0	0	1	0	0
MTAP	4507	broad.mit.edu	37	9	21859377	21859377	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21859377C>T	uc003zph.2	+	7	879	c.766C>T	c.(766-768)CCT>TCT	p.P256S	MTAP_uc003zpi.1_Intron|MTAP_uc010mit.2_RNA|MTAP_uc011lnk.1_Missense_Mutation_p.P273S|MTAP_uc011lnl.1_Missense_Mutation_p.P189S	NM_002451	NP_002442	Q13126	MTAP_HUMAN	5'-methylthioadenosine phosphorylase	256					nucleoside metabolic process	cytoplasm	phosphorylase activity|S-methyl-5-thioadenosine phosphorylase activity			central_nervous_system(1)	1		all_cancers(5;0)|Hepatocellular(5;0.00162)|Colorectal(97;0.173)		GBM - Glioblastoma multiforme(3;0)|Lung(24;2.24e-57)|LUSC - Lung squamous cell carcinoma(38;1.97e-36)|STAD - Stomach adenocarcinoma(4;3.26e-05)|OV - Ovarian serous cystadenocarcinoma(39;0.00931)|COAD - Colon adenocarcinoma(8;0.15)	Adenine(DB00173)	CACTACCATACCTCAGATAGG	0.458													5	47					0	0	1	0	0
MTAP	4507	broad.mit.edu	37	9	21859391	21859391	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:21859391C>T	uc003zph.2	+	7	893	c.780C>T	c.(778-780)TCC>TCT	p.S260S	MTAP_uc003zpi.1_Intron|MTAP_uc010mit.2_RNA|MTAP_uc011lnk.1_Silent_p.S277S|MTAP_uc011lnl.1_Silent_p.S193S	NM_002451	NP_002442	Q13126	MTAP_HUMAN	5'-methylthioadenosine phosphorylase	260					nucleoside metabolic process	cytoplasm	phosphorylase activity|S-methyl-5-thioadenosine phosphorylase activity			central_nervous_system(1)	1		all_cancers(5;0)|Hepatocellular(5;0.00162)|Colorectal(97;0.173)		GBM - Glioblastoma multiforme(3;0)|Lung(24;2.24e-57)|LUSC - Lung squamous cell carcinoma(38;1.97e-36)|STAD - Stomach adenocarcinoma(4;3.26e-05)|OV - Ovarian serous cystadenocarcinoma(39;0.00931)|COAD - Colon adenocarcinoma(8;0.15)	Adenine(DB00173)	AGATAGGGTCCACAGAATGGT	0.443													11	32					0	0	1	0	0
DMRTA1	63951	broad.mit.edu	37	9	22451350	22451350	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:22451350C>T	uc003zpp.1	+	2	1180	c.955C>T	c.(955-957)CTT>TTT	p.L319F		NM_022160	NP_071443	Q5VZB9	DMRTA_HUMAN	DMRT-like family A1	319					cell differentiation|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|skin(1)	2		all_cancers(5;4.09e-243)|Acute lymphoblastic leukemia(3;8.25e-150)|all_hematologic(3;4.25e-147)|Esophageal squamous(3;2.32e-09)|Renal(3;1.71e-07)|Breast(3;2.07e-06)|Hepatocellular(5;0.00563)		GBM - Glioblastoma multiforme(1;5.12e-278)|Lung(24;8.2e-52)|LUSC - Lung squamous cell carcinoma(38;1.46e-37)|OV - Ovarian serous cystadenocarcinoma(39;0.0517)		CAAGGCAAGCCTTCCGACAGT	0.478													6	49					0	0	1	0	0
ELAVL2	1993	broad.mit.edu	37	9	23692817	23692817	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:23692817C>T	uc003zpu.2	-	7	1093	c.818G>A	c.(817-819)GGA>GAA	p.G273E	ELAVL2_uc003zps.2_Missense_Mutation_p.G260E|ELAVL2_uc003zpt.2_Missense_Mutation_p.G260E|ELAVL2_uc003zpv.2_Missense_Mutation_p.G273E|ELAVL2_uc003zpw.2_Missense_Mutation_p.G260E	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	273					regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		CCACCCTGTTCCAGGGTGCCC	0.463													6	74					0	0	1	0	0
ELAVL2	1993	broad.mit.edu	37	9	23762076	23762076	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:23762076C>T	uc003zpu.2	-	2	432	c.157G>A	c.(157-159)GAG>AAG	p.E53K	ELAVL2_uc003zps.2_Missense_Mutation_p.E53K|ELAVL2_uc003zpt.2_Missense_Mutation_p.E53K|ELAVL2_uc003zpv.2_Missense_Mutation_p.E53K|ELAVL2_uc003zpw.2_Missense_Mutation_p.E53K	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	53	RRM 1.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		TTTAGTTCCTCCTGTGTCATG	0.398													19	112					0	0	1	0	0
PLAA	9373	broad.mit.edu	37	9	26928394	26928394	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:26928394G>A	uc003zqd.2	-	3	781	c.356C>T	c.(355-357)TCA>TTA	p.S119L	PLAA_uc003zqe.2_Missense_Mutation_p.S119L	NM_001031689	NP_001026859	Q9Y263	PLAP_HUMAN	phospholipase A2-activating protein	119	WD 3.				phospholipid metabolic process|signal transduction		phospholipase A2 activator activity				0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(218;1.32e-05)|LUSC - Lung squamous cell carcinoma(38;0.00011)		TTTTCCAGATGATAGACTACA	0.358													5	48					0	0	1	0	0
LRRC19	64922	broad.mit.edu	37	9	26999654	26999654	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:26999654G>A	uc003zqh.2	-	2	150	c.39C>T	c.(37-39)CTC>CTT	p.L13L	IFT74_uc010mja.2_Intron|IFT74_uc010mjb.2_Intron|IFT74_uc003zqf.3_Intron|IFT74_uc003zqg.3_Intron	NM_022901	NP_075052	Q9H756	LRC19_HUMAN	leucine rich repeat containing 19 precursor	13						integral to membrane					0		all_neural(11;1.81e-09)		Lung(218;1.06e-05)|LUSC - Lung squamous cell carcinoma(38;0.0001)		ATATCATGGAGAGGGGCCAAA	0.303													20	27					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27157863	27157863	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27157863C>T	uc003zqi.3	+	2	529	c.87C>T	c.(85-87)ATC>ATT	p.I29I	TEK_uc010mjc.1_Intron|TEK_uc011lnn.1_Silent_p.I29I|TEK_uc011lno.1_Silent_p.I29I|TEK_uc011lnp.1_Intron|TEK_uc003zqj.1_Silent_p.I6I	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	29	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TGATCTTGATCAATTCCCTAC	0.463													83	163					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27157868	27157868	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27157868C>T	uc003zqi.3	+	2	534	c.92C>T	c.(91-93)TCC>TTC	p.S31F	TEK_uc010mjc.1_Intron|TEK_uc011lnn.1_Missense_Mutation_p.S31F|TEK_uc011lno.1_Missense_Mutation_p.S31F|TEK_uc011lnp.1_Intron|TEK_uc003zqj.1_Missense_Mutation_p.S8F	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	31	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TTGATCAATTCCCTACCTCTT	0.458													78	168					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27169583	27169583	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27169583G>A	uc003zqi.3	+	4	1026	c.584G>A	c.(583-585)GGA>GAA	p.G195E	TEK_uc010mjc.1_Missense_Mutation_p.G48E|TEK_uc011lnn.1_Missense_Mutation_p.G195E|TEK_uc011lno.1_Missense_Mutation_p.G195E|TEK_uc011lnp.1_Missense_Mutation_p.G91E|TEK_uc003zqj.1_Missense_Mutation_p.G172E	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	195	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		AGGTATATAGGAGGAAACCTC	0.493													41	88					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27169628	27169628	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27169628G>A	uc003zqi.3	+	4	1070	c.628_splice	c.e4+1	p.R210_splice	TEK_uc010mjc.1_Splice_Site_p.R63_splice|TEK_uc011lnn.1_Splice_Site_p.R210_splice|TEK_uc011lno.1_Splice_Site_p.R210_splice|TEK_uc011lnp.1_Splice_Site_p.R106_splice|TEK_uc003zqj.1_Splice_Site_p.R187_splice	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor						angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		ATAGTCCGGAGTAAGTGATGG	0.393													28	59					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27185547	27185547	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27185547C>T	uc003zqi.3	+	9	1689	c.1247C>T	c.(1246-1248)CCC>CTC	p.P416L	TEK_uc011lno.1_Missense_Mutation_p.P373L|TEK_uc011lnp.1_Missense_Mutation_p.P269L|TEK_uc003zqj.1_Missense_Mutation_p.P350L	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	416	Extracellular (Potential).|Ig-like C2-type 2.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CGGATCCTCCCCCCTGACTCA	0.423													36	140					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27190614	27190614	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27190614G>A	uc003zqi.3	+	10	1857	c.1415G>A	c.(1414-1416)GGG>GAG	p.G472E	TEK_uc011lno.1_Missense_Mutation_p.G429E|TEK_uc011lnp.1_Missense_Mutation_p.G325E|TEK_uc003zqj.1_Missense_Mutation_p.G406E	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	472	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CCTTACTTTGGGGATGGACCA	0.423													43	133					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27197330	27197330	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27197330G>A	uc003zqi.3	+	12	2084	c.1642G>A	c.(1642-1644)GGT>AGT	p.G548S	TEK_uc011lno.1_Missense_Mutation_p.G505S|TEK_uc011lnp.1_Missense_Mutation_p.G401S|TEK_uc003zqj.1_Missense_Mutation_p.G482S	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	548	Extracellular (Potential).|Fibronectin type-III 2.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TCCTCCAAGAGGTCTAAATCT	0.313													32	86					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27197484	27197484	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27197484C>T	uc003zqi.3	+	12	2238	c.1796C>T	c.(1795-1797)TCG>TTG	p.S599L	TEK_uc011lno.1_Missense_Mutation_p.S556L|TEK_uc011lnp.1_Missense_Mutation_p.S452L|TEK_uc003zqj.1_Missense_Mutation_p.S533L	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	599	Extracellular (Potential).|Fibronectin type-III 2.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		AACTTGACTTCGGTGCTACTT	0.463													50	85					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27206694	27206694	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27206694C>T	uc003zqi.3	+	15	2921	c.2479C>T	c.(2479-2481)CAA>TAA	p.Q827*	TEK_uc011lno.1_Nonsense_Mutation_p.Q784*|TEK_uc011lnp.1_Nonsense_Mutation_p.Q679*|TEK_uc003zqj.1_Nonsense_Mutation_p.Q761*	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	827	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CATCAAATTTCAAGATGTGAT	0.453													9	45					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27212761	27212761	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27212761C>T	uc003zqi.3	+	17	3185	c.2743C>T	c.(2743-2745)CGC>TGC	p.R915C	TEK_uc011lno.1_Missense_Mutation_p.R872C|TEK_uc011lnp.1_Missense_Mutation_p.R767C	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	915	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		GGACTTCCTTCGCAAGAGCCG	0.582													7	39					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27228254	27228254	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27228254C>T	uc003zqi.3	+	22	3693	c.3251C>T	c.(3250-3252)TCA>TTA	p.S1084L	TEK_uc011lno.1_Missense_Mutation_p.S1041L|TEK_uc011lnp.1_Missense_Mutation_p.S936L	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	1084	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		GAGAGGCCATCATTTGCCCAG	0.413													16	109					0	0	1	0	0
LINGO2	158038	broad.mit.edu	37	9	27949180	27949180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27949180G>A	uc003zqu.1	-	2	1684	c.1490C>T	c.(1489-1491)TCC>TTC	p.S497F	LINGO2_uc010mjf.1_Missense_Mutation_p.S497F|LINGO2_uc003zqv.1_Missense_Mutation_p.S497F	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	497	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		CACAGTTAAGGAGGCTGTGAA	0.483													20	84					0	0	1	0	0
LINGO2	158038	broad.mit.edu	37	9	27949866	27949866	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:27949866G>A	uc003zqu.1	-	2	998	c.804C>T	c.(802-804)GCC>GCT	p.A268A	LINGO2_uc010mjf.1_Silent_p.A268A|LINGO2_uc003zqv.1_Silent_p.A268A	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	268	LRR 9.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		GGTGTTTAAAGGCAAGGAAGG	0.493													19	141					0	0	1	0	0
ACO1	48	broad.mit.edu	37	9	32405519	32405519	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32405519C>T	uc003zqw.3	+	2	170	c.15C>T	c.(13-15)TTC>TTT	p.F5F	ACO1_uc010mjh.1_5'UTR|ACO1_uc003zqx.3_Silent_p.F5F|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	5					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		GCAACCCATTCGCACACCTTG	0.398													13	55					0	0	1	0	0
DDX58	23586	broad.mit.edu	37	9	32493803	32493803	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32493803G>A	uc003zra.2	-	3	537	c.379C>T	c.(379-381)CTG>TTG	p.L127L	DDX58_uc010mjj.2_RNA|DDX58_uc010mjk.1_Silent_p.L82L|DDX58_uc011lnr.1_5'UTR|DDX58_uc010mji.2_Silent_p.L56L	NM_014314	NP_055129	O95786	DDX58_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	127	CARD 2.				detection of virus|innate immune response|negative regulation of type I interferon production|positive regulation of defense response to virus by host|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter	cytosol	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|protein binding|zinc ion binding			ovary(2)|liver(1)|pancreas(1)	4			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;0.00056)		CATTCAGACAGATCAGAAATG	0.284													9	45					0	0	1	0	0
DDX58	23586	broad.mit.edu	37	9	32500834	32500834	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32500834G>A	uc003zra.2	-	2	368	c.210C>T	c.(208-210)TTC>TTT	p.F70F	DDX58_uc010mjj.2_RNA|DDX58_uc010mjk.1_Intron|DDX58_uc011lnr.1_5'UTR|DDX58_uc010mji.2_5'UTR	NM_014314	NP_055129	O95786	DDX58_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	70	CARD 1.				detection of virus|innate immune response|negative regulation of type I interferon production|positive regulation of defense response to virus by host|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter	cytosol	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|protein binding|zinc ion binding			ovary(2)|liver(1)|pancreas(1)	4			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;0.00056)		AAAAGCCACGGAACCAGCCTT	0.443													43	74					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32630909	32630909	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32630909G>A	uc003zrg.1	-	1	4759	c.4669C>T	c.(4669-4671)CCA>TCA	p.P1557S	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1557	Bromo 2.				male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TAATAATCTGGAACAAACTTC	0.388													32	69					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32631512	32631512	+	Missense_Mutation	SNP	G	A	A	rs56107531		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32631512G>A	uc003zrg.1	-	1	4156	c.4066C>T	c.(4066-4068)CGC>TGC	p.R1356C	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1356					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GATTTTCTGCGAACCTCATGC	0.398													103	213					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32631943	32631943	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32631943G>A	uc003zrg.1	-	1	3725	c.3635C>T	c.(3634-3636)GCC>GTC	p.A1212V	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1212					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GCGCACATAGGCATCAATGAC	0.448													61	94					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32631951	32631951	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32631951G>A	uc003zrg.1	-	1	3717	c.3627C>T	c.(3625-3627)GTC>GTT	p.V1209V	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1209					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGGCATCAATGACAGCTGGTT	0.428													61	96					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32631980	32631980	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32631980G>A	uc003zrg.1	-	1	3688	c.3598C>T	c.(3598-3600)CGC>TGC	p.R1200C	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1200					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GTCTCACAGCGAACATACTCT	0.428													15	142					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32633831	32633831	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32633831G>A	uc003zrg.1	-	1	1837	c.1747C>T	c.(1747-1749)CCA>TCA	p.P583S	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	583					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGATTCCATGGATCTTTCACT	0.458													117	261					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32634069	32634069	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32634069G>A	uc003zrg.1	-	1	1599	c.1509C>T	c.(1507-1509)ATC>ATT	p.I503I	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	503					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CATCCCAAATGATATTGTCCT	0.478													36	130					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32634323	32634323	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32634323C>T	uc003zrg.1	-	1	1345	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	419					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGGAAGTTTTCGTCAGCCAGA	0.443													65	246					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32634652	32634652	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:32634652G>A	uc003zrg.1	-	1	1016	c.926C>T	c.(925-927)TCT>TTT	p.S309F	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	309					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GTTCCACAAAGACTTCTGGCT	0.498													40	125					0	0	1	0	0
SPINK4	27290	broad.mit.edu	37	9	33246683	33246683	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33246683G>A	uc003zsh.2	+	3	183	c.172G>A	c.(172-174)GGG>AGG	p.G58R	SUGT1P1_uc010mjq.1_Intron	NM_014471	NP_055286	O60575	ISK4_HUMAN	serine peptidase inhibitor, Kazal type 4	58	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity				0			LUSC - Lung squamous cell carcinoma(29;0.00506)			CGGCACTGATGGGCTCACATA	0.567													23	52					0	0	1	0	0
SPINK4	27290	broad.mit.edu	37	9	33248459	33248459	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33248459G>A	uc003zsh.2	+	4	262	c.251G>A	c.(250-252)GGC>GAC	p.G84D	SUGT1P1_uc010mjq.1_Intron	NM_014471	NP_055286	O60575	ISK4_HUMAN	serine peptidase inhibitor, Kazal type 4	84	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity				0			LUSC - Lung squamous cell carcinoma(29;0.00506)			ATGAAAGATGGCAAATGCTGA	0.483													13	25					0	0	1	0	0
NFX1	4799	broad.mit.edu	37	9	33294597	33294597	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33294597C>T	uc003zsq.2	+	2	266	c.205C>T	c.(205-207)CAT>TAT	p.H69Y	SUGT1P1_uc010mjq.1_Intron|NFX1_uc011lnw.1_Missense_Mutation_p.H69Y|NFX1_uc003zso.2_Missense_Mutation_p.H69Y|NFX1_uc003zsp.1_Missense_Mutation_p.H69Y|NFX1_uc010mjr.1_Missense_Mutation_p.H69Y|NFX1_uc003zsr.2_Missense_Mutation_p.H69Y	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	69					inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		CTCTGCTGTTCATCAGCATAG	0.458													45	154					0	0	1	0	0
AQP7	364	broad.mit.edu	37	9	33385766	33385766	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33385766G>A	uc003zst.2	-	7	796	c.624C>T	c.(622-624)ATC>ATT	p.I208I	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Silent_p.I151I|AQP7_uc010mjs.2_Silent_p.I116I|AQP7_uc010mjt.2_Silent_p.I116I|AQP7_uc011lnx.1_Silent_p.I208I|AQP7_uc011lny.1_Silent_p.I207I|AQP7_uc003zss.3_Silent_p.I116I|AQP7_uc011lnz.1_Silent_p.I116I|AQP7_uc011loa.1_Missense_Mutation_p.P77S	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	208	Helical; (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		TGACCACGAGGATGCCTATCA	0.602													30	79					0	0	1	0	0
AQP7	364	broad.mit.edu	37	9	33385791	33385791	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33385791C>T	uc003zst.2	-	7	771	c.599G>A	c.(598-600)GGA>GAA	p.G200E	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Missense_Mutation_p.G143E|AQP7_uc010mjs.2_Missense_Mutation_p.G108E|AQP7_uc010mjt.2_Missense_Mutation_p.G108E|AQP7_uc011lnx.1_Missense_Mutation_p.G200E|AQP7_uc011lny.1_Missense_Mutation_p.G199E|AQP7_uc003zss.3_Missense_Mutation_p.G108E|AQP7_uc011lnz.1_Missense_Mutation_p.G108E|AQP7_uc011loa.1_Silent_p.R68R	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	200	Helical; (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		CGCCTCTGTTCCTGGCAGTGC	0.617													13	74					0	0	1	0	0
AQP7	364	broad.mit.edu	37	9	33385829	33385829	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33385829G>A	uc003zst.2	-	7	733	c.561C>T	c.(559-561)TTC>TTT	p.F187F	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Silent_p.F130F|AQP7_uc010mjs.2_Silent_p.F95F|AQP7_uc010mjt.2_Silent_p.F95F|AQP7_uc011lnx.1_Silent_p.F187F|AQP7_uc011lny.1_Silent_p.F186F|AQP7_uc003zss.3_Silent_p.F95F|AQP7_uc011lnz.1_Silent_p.F95F|AQP7_uc011loa.1_Missense_Mutation_p.R56C	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	187	Helical; (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		CCGTGATGGCGAAGAGACACA	0.627													9	68					0	0	1	0	0
NOL6	65083	broad.mit.edu	37	9	33463397	33463397	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33463397G>A	uc003zsz.2	-	24	3138	c.3037C>T	c.(3037-3039)CGC>TGC	p.R1013C	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_Missense_Mutation_p.R67C|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Missense_Mutation_p.R1010C|NOL6_uc011lob.1_Missense_Mutation_p.R961C|NOL6_uc003ztb.1_Intron	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	1013					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		GGAGACAGGCGAATCAGCACG	0.652													9	33					0	0	1	0	0
NOL6	65083	broad.mit.edu	37	9	33464952	33464952	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33464952G>A	uc003zsz.2	-	21	2805	c.2704C>T	c.(2704-2706)CGA>TGA	p.R902*	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'UTR|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Nonsense_Mutation_p.R899*|NOL6_uc011lob.1_Nonsense_Mutation_p.R850*|NOL6_uc003ztb.1_Nonsense_Mutation_p.R902*	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	902					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		AAAAGGAATCGAAGGAAGCCA	0.502													23	59					0	0	1	0	0
NOL6	65083	broad.mit.edu	37	9	33466326	33466326	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33466326G>A	uc003zsz.2	-	17	2290	c.2189C>T	c.(2188-2190)GCC>GTC	p.A730V	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Missense_Mutation_p.A727V|NOL6_uc011lob.1_Missense_Mutation_p.A678V|NOL6_uc003ztb.1_Missense_Mutation_p.A730V	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	730					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		CTCCACGTAGGCCGGACAGGG	0.612											OREG0019137	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	97					0	0	1	0	0
NOL6	65083	broad.mit.edu	37	9	33466940	33466940	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33466940G>A	uc003zsz.2	-	15	2021	c.1920C>T	c.(1918-1920)CCC>CCT	p.P640P	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Silent_p.P640P|NOL6_uc010mjv.2_Silent_p.P637P|NOL6_uc011lob.1_Silent_p.P588P|NOL6_uc003ztb.1_Silent_p.P640P	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	640					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		GTGCATCCAGGGGGCCCCCCA	0.517											OREG0019137	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	54	376					0	0	1	0	0
ANXA2P2	304	broad.mit.edu	37	9	33624284	33624284	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33624284C>T	uc010mjx.2	+	1	62	c.13C>T	c.(13-15)CAC>TAC	p.H5Y		NM_004039	NP_004030			annexin A2 isoform 2												0						GTCTACTGTTCACGAAATCCT	0.527											OREG0019140	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	41					0	0	1	0	0
ANXA2P2	304	broad.mit.edu	37	9	33624621	33624621	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33624621C>T	uc010mjx.2	+	1	399	c.350C>T	c.(349-351)TCC>TTC	p.S117F		NM_004039	NP_004030			annexin A2 isoform 2												0						CTAAAAGCTTCCATGAAGGGG	0.498											OREG0019140	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	61					0	0	1	0	0
ANXA2P2	304	broad.mit.edu	37	9	33624926	33624926	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33624926G>A	uc010mjx.2	+	1	704	c.655G>A	c.(655-657)GAG>AAG	p.E219K		NM_004039	NP_004030			annexin A2 isoform 2												0						CATCATGACCGAGCGGAGCGT	0.468													15	67					0	0	1	0	0
PTENP1	11191	broad.mit.edu	37	9	33676025	33676025	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33676025C>T	uc003zth.3	-	1	1394	c.523G>A	c.(523-525)GGA>AGA	p.G175R		NR_023917				SubName: Full=Phosphatase and tensin homolog 2; Flags: Fragment;												0						TTGCAAGTTCCGCCACTGAAC	0.418													38	118					0	0	1	0	0
UBAP2	55833	broad.mit.edu	37	9	33944535	33944535	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33944535G>A	uc003ztq.1	-	14	1486	c.1373C>T	c.(1372-1374)TCC>TTC	p.S458F	UBAP2_uc011loc.1_Missense_Mutation_p.S367F|UBAP2_uc011lod.1_Missense_Mutation_p.S191F|UBAP2_uc011loe.1_Missense_Mutation_p.S213F|UBAP2_uc011lof.1_Missense_Mutation_p.S383F|UBAP2_uc011log.1_Missense_Mutation_p.S404F|UBAP2_uc003ztr.2_Missense_Mutation_p.S330F|UBAP2_uc003zts.2_Missense_Mutation_p.S91F	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	458										ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		GGAAGGAAAGGACTCCAAACC	0.512													20	38					0	0	1	0	0
UBAP2	55833	broad.mit.edu	37	9	33956124	33956124	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:33956124G>A	uc003ztq.1	-	11	932	c.819C>T	c.(817-819)TTC>TTT	p.F273F	UBAP2_uc011loc.1_Silent_p.F182F|UBAP2_uc011lod.1_Intron|UBAP2_uc011loe.1_Silent_p.F28F|UBAP2_uc011lof.1_Silent_p.F198F|UBAP2_uc011log.1_Silent_p.F219F|UBAP2_uc003ztr.2_Silent_p.F145F	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	273										ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		ATGAGGCAGTGAAGACCTTTG	0.348													15	84					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	34133332	34133332	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34133332G>A	uc003ztu.1	+	1		c.16G>A			uc003ztv.1_5'Flank|uc003ztw.1_5'Flank					DQ586874																		GGTAGGGCACGAACTTCTGAA	0.562													26	22					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	34133398	34133398	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34133398C>T	uc003ztv.1	+	1		c.2C>T			uc003ztw.1_5'Flank					DQ585850																		TCACCTTATCCCCCTTGCTGA	0.557													6	33					0	0	1	0	0
C9orf24	84688	broad.mit.edu	37	9	34381390	34381390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34381390C>T	uc003zuh.1	-	4	667	c.449G>A	c.(448-450)AGG>AAG	p.R150K	C9orf24_uc003zug.1_Missense_Mutation_p.R15K|C9orf24_uc003zuf.1_Missense_Mutation_p.R15K|C9orf24_uc003zui.1_Missense_Mutation_p.R15K	NM_032596	NP_115985	Q8NCR6	CI024_HUMAN	testes development-related NYD-SP22 isoform 1	150										ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.123)		CCGCTCCGGCCTAGGAGGGCA	0.617													36	117					0	0	1	0	0
DNAI1	27019	broad.mit.edu	37	9	34493208	34493208	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34493208C>T	uc003zum.2	+	9	891	c.698C>T	c.(697-699)GCC>GTC	p.A233V		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	233					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		ATCTATGATGCCTATGTAGAG	0.453									Kartagener_syndrome				16	91					0	0	1	0	0
DNAI1	27019	broad.mit.edu	37	9	34506728	34506728	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34506728C>T	uc003zum.2	+	13	1360	c.1167C>T	c.(1165-1167)CTC>CTT	p.L389L		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	389	WD 1.				cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		TCATGTGTCTCGACATCCACG	0.577									Kartagener_syndrome				27	47					0	0	1	0	0
DNAI1	27019	broad.mit.edu	37	9	34513176	34513176	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34513176G>A	uc003zum.2	+	16	1749	c.1556G>A	c.(1555-1557)GGA>GAA	p.G519E		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	519					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		ACAGAGGAGGGAAAAATCTAC	0.522									Kartagener_syndrome				62	105					0	0	1	0	0
CNTFR	1271	broad.mit.edu	37	9	34552812	34552812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34552812G>A	uc003zup.1	-	8	1090	c.809C>T	c.(808-810)GCC>GTC	p.A270V	CNTFR_uc003zuq.1_Missense_Mutation_p.A270V	NM_147164	NP_671693	P26992	CNTFR_HUMAN	ciliary neurotrophic factor receptor	270	Fibronectin type-III 2.				nervous system development	anchored to membrane|extrinsic to membrane|plasma membrane	ciliary neurotrophic factor receptor activity|receptor binding			ovary(3)|central_nervous_system(1)|skin(1)	5	all_epithelial(49;0.0899)		STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.00494)		CCCGGCGTAGGCATCTGTGAT	0.622													22	126					0	0	1	0	0
CNTFR	1271	broad.mit.edu	37	9	34557641	34557641	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34557641G>A	uc003zup.1	-	6	768	c.487C>T	c.(487-489)CGC>TGC	p.R163C	CNTFR_uc003zuq.1_Missense_Mutation_p.R163C	NM_147164	NP_671693	P26992	CNTFR_HUMAN	ciliary neurotrophic factor receptor	163	Fibronectin type-III 1.				nervous system development	anchored to membrane|extrinsic to membrane|plasma membrane	ciliary neurotrophic factor receptor activity|receptor binding			ovary(3)|central_nervous_system(1)|skin(1)	5	all_epithelial(49;0.0899)		STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.00494)		ATGTGGCAGCGGTTCTTGAGG	0.537													24	62					0	0	1	0	0
CNTFR	1271	broad.mit.edu	37	9	34564810	34564810	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34564810C>T	uc003zup.1	-	4	387	c.106G>A	c.(106-108)GAG>AAG	p.E36K	CNTFR_uc003zuq.1_Missense_Mutation_p.E36K	NM_147164	NP_671693	P26992	CNTFR_HUMAN	ciliary neurotrophic factor receptor	36	Ig-like C2-type.				nervous system development	anchored to membrane|extrinsic to membrane|plasma membrane	ciliary neurotrophic factor receptor activity|receptor binding			ovary(3)|central_nervous_system(1)|skin(1)	5	all_epithelial(49;0.0899)		STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.00494)		CCCAGGCGCTCGTACTGCACA	0.652													15	37					0	0	1	0	0
DCTN3	11258	broad.mit.edu	37	9	34614060	34614060	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34614060G>A	uc003zux.1	-	6	485	c.450C>T	c.(448-450)CTC>CTT	p.L150L	C9orf23_uc003zuu.2_5'Flank|C9orf23_uc003zuv.2_5'Flank|DCTN3_uc003zuw.1_3'UTR	NM_007234	NP_009165	O75935	DCTN3_HUMAN	dynactin 3 isoform 1	150	Potential.				cytokinesis|G2/M transition of mitotic cell cycle|mitosis	centrosome|cleavage furrow|condensed chromosome kinetochore|cytosol|dynactin complex|midbody|perinuclear region of cytoplasm|spindle	protein binding|structural molecule activity				0	all_epithelial(49;0.0863)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.0388)		ATTCCTCCAGGAGAGCCTTGG	0.498													36	70					0	0	1	0	0
ARID3C	138715	broad.mit.edu	37	9	34627700	34627700	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34627700G>A	uc011lon.1	-	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	104					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		CTACCTGCTTGAATTGTTCCT	0.577													9	64					0	0	1	0	0
IL11RA	3590	broad.mit.edu	37	9	34660551	34660551	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34660551C>T	uc003zvi.2	+	11	2479	c.1123C>T	c.(1123-1125)CTT>TTT	p.L375F	IL11RA_uc011loq.1_Missense_Mutation_p.L375F|IL11RA_uc003zvj.2_Missense_Mutation_p.L375F|IL11RA_uc003zvk.2_Missense_Mutation_p.L375F|IL11RA_uc010mke.2_Missense_Mutation_p.L257F|IL11RA_uc003zvl.2_RNA	NM_004512	NP_004503	Q14626	I11RA_HUMAN	interleukin 11 receptor, alpha isoform 1	375	Helical; (Potential).					integral to plasma membrane	cytokine receptor activity			skin(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.174)	Oprelvekin(DB00038)	TTTGGGAATCCTTTCTTTCCT	0.592													11	36					0	0	1	0	0
KIAA1045	23349	broad.mit.edu	37	9	34976624	34976624	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:34976624G>A	uc003zvq.2	+	5	914	c.736G>A	c.(736-738)GAG>AAG	p.E246K	KIAA1045_uc003zvr.2_Missense_Mutation_p.E246K	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	246							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			GGAGCAAGAAGAGCAGGCGGC	0.612													18	65					0	0	1	0	0
C9orf131	138724	broad.mit.edu	37	9	35043180	35043180	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35043180G>A	uc003zvw.2	+	2	583	c.554G>A	c.(553-555)GGG>GAG	p.G185E	C9orf131_uc003zvu.2_Missense_Mutation_p.G137E|C9orf131_uc003zvv.2_Missense_Mutation_p.G112E|C9orf131_uc003zvx.2_Missense_Mutation_p.G150E	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	185											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			ATAGCATCAGGGAACCGCCAG	0.567													39	99					0	0	1	0	0
C9orf131	138724	broad.mit.edu	37	9	35044528	35044528	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35044528A>G	uc003zvw.2	+	2	1931	c.1902A>G	c.(1900-1902)GAA>GAG	p.E634E	C9orf131_uc003zvu.2_Silent_p.E586E|C9orf131_uc003zvv.2_Silent_p.E561E|C9orf131_uc003zvx.2_Silent_p.E599E	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	634											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			AGCAAAAAGAAAACTGTGTTC	0.498													23	162					0	0	1	0	0
VCP	7415	broad.mit.edu	37	9	35060446	35060446	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35060446G>A	uc003zvy.2	-	13	1948	c.1559C>T	c.(1558-1560)CCT>CTT	p.P520L	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_Missense_Mutation_p.P189L|VCP_uc010mki.1_Missense_Mutation_p.P475L	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	520					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CCCACAGCCAGGAGGTCCATA	0.498													27	58					0	0	1	0	0
FANCG	2189	broad.mit.edu	37	9	35079515	35079515	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35079515G>A	uc003zwb.1	-	1	499	c.7C>T	c.(7-9)CGC>TGC	p.R3C	FANCG_uc003zwa.1_5'Flank|FANCG_uc010mkj.1_5'UTR|FANCG_uc011lot.1_Missense_Mutation_p.R3C	NM_004629	NP_004620	O15287	FANCG_HUMAN	Fanconi anemia, complementation group G	3					cell cycle checkpoint|DNA repair|mitochondrion organization	mitochondrion|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|large_intestine(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GTGGTCTGGCGGGACATGGTG	0.662			Mis|N|F|S			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				19	101					0	0	1	0	0
KIAA1539	80256	broad.mit.edu	37	9	35108046	35108046	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35108046G>A	uc003zwl.2	-	3	551	c.226C>T	c.(226-228)CCC>TCC	p.P76S	KIAA1539_uc003zwm.2_Missense_Mutation_p.P76S|KIAA1539_uc003zwn.2_Intron|KIAA1539_uc003zwo.2_Missense_Mutation_p.P76S|KIAA1539_uc003zwp.1_Missense_Mutation_p.P76S|KIAA1539_uc010mkk.1_Intron	NM_025182	NP_079458	Q7L5A3	K1539_HUMAN	hypothetical protein LOC80256	76						nucleus				ovary(2)	2	all_epithelial(49;0.217)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AGCTCCCGGGGACCCTCAGTG	0.637													11	32					0	0	1	0	0
UNC13B	10497	broad.mit.edu	37	9	35366948	35366948	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35366948C>T	uc003zwq.2	+	11	1464	c.1172C>T	c.(1171-1173)CCA>CTA	p.P391L	UNC13B_uc010mkl.1_Nonsense_Mutation_p.Q399*|UNC13B_uc003zwr.2_Missense_Mutation_p.P391L|UNC13B_uc010mkm.1_RNA	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	391					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			TTAAAGATTCCAGATGATGGT	0.448													12	55					0	0	1	0	0
UNC13B	10497	broad.mit.edu	37	9	35381118	35381118	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35381118C>T	uc003zwq.2	+	18	2442	c.2150C>T	c.(2149-2151)GCC>GTC	p.A717V	UNC13B_uc003zwr.2_Missense_Mutation_p.A717V	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	717					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GACAAATCAGCCGTCTCAGGG	0.488													6	34					0	0	1	0	0
UNC13B	10497	broad.mit.edu	37	9	35400426	35400426	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35400426C>T	uc003zwq.2	+	36	4515	c.4223C>T	c.(4222-4224)TCG>TTG	p.S1408L	UNC13B_uc003zwr.2_Missense_Mutation_p.S1408L	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	1408					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			TTTGTGCGCTCGCAGACCACC	0.527													70	121					0	0	1	0	0
ATP8B5P	158381	broad.mit.edu	37	9	35449850	35449850	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35449850G>A	uc010mkn.1	+	10		c.2700G>A			ATP8B5P_uc010mko.2_RNA|ATP8B5P_uc010mkp.2_RNA|ATP8B5P_uc003zwu.2_Intron					Homo sapiens cDNA, FLJ17320.												0						ATGCTATAAAGAACATCTTCA	0.423													10	34					0	0	1	0	0
TESK1	7016	broad.mit.edu	37	9	35608894	35608894	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35608894C>T	uc003zxa.2	+	10	1372	c.1036C>T	c.(1036-1038)CCC>TCC	p.P346S	TESK1_uc003zwz.1_Intron|TESK1_uc010mks.2_Missense_Mutation_p.P186S	NM_006285	NP_006276	Q15569	TESK1_HUMAN	testis-specific protein kinase 1	346					cell junction assembly|spermatogenesis	cytosol	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|breast(2)|lung(1)|ovary(1)|skin(1)	7			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TGCCACGCTTCCCAGGCCAGA	0.582													41	112					0	0	1	0	0
SIT1	27240	broad.mit.edu	37	9	35650207	35650207	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35650207C>T	uc003zxe.1	-	4	428	c.331G>A	c.(331-333)GAT>AAT	p.D111N	SIT1_uc003zxf.1_RNA	NM_014450	NP_055265	Q9Y3P8	SIT1_HUMAN	SHP2-interacting transmembrane adaptor protein	111	Cytoplasmic (Potential).				regulation of T cell activation|signal transduction	integral to plasma membrane	kinase binding|SH2 domain binding				0			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			AGAGTTGGATCCTGCTGGTCT	0.617													21	45					0	0	1	0	0
CA9	768	broad.mit.edu	37	9	35675537	35675537	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35675537G>A	uc003zxo.3	+	2	448	c.406G>A	c.(406-408)GAT>AAT	p.D136N	C9orf100_uc003zxl.2_RNA|CA9_uc003zxp.3_Missense_Mutation_p.D136N	NM_001216	NP_001207	Q16790	CAH9_HUMAN	carbonic anhydrase IX precursor	136	Extracellular.|Catalytic.				one-carbon metabolic process	integral to membrane|microvillus membrane|nucleolus	carbonate dehydratase activity|zinc ion binding			ovary(4)|skin(1)	5	all_epithelial(49;0.217)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TTATACAGGGGATGACCAGAG	0.473													10	47					0	0	1	0	0
CA9	768	broad.mit.edu	37	9	35679199	35679199	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35679199C>T	uc003zxo.3	+	7	967	c.925C>T	c.(925-927)CCA>TCA	p.P309S	CA9_uc003zxp.3_Missense_Mutation_p.P309S	NM_001216	NP_001207	Q16790	CAH9_HUMAN	carbonic anhydrase IX precursor	309	Extracellular.|Catalytic.				one-carbon metabolic process	integral to membrane|microvillus membrane|nucleolus	carbonate dehydratase activity|zinc ion binding			ovary(4)|skin(1)	5	all_epithelial(49;0.217)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GACTCAGGTCCCAGGACTGGA	0.537													24	258					0	0	1	0	0
TPM2	7169	broad.mit.edu	37	9	35685445	35685445	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35685445G>A	uc003zxq.2	-	4	717	c.478C>T	c.(478-480)CGC>TGC	p.R160C	TPM2_uc003zxr.2_Missense_Mutation_p.R160C|TPM2_uc003zxs.2_Missense_Mutation_p.R160C|TPM2_uc010mkz.2_Missense_Mutation_p.R160C|TPM2_uc011lpa.1_Missense_Mutation_p.R160C	NM_213674	NP_998839	P07951	TPM2_HUMAN	tropomyosin 2 (beta) isoform 2	160	By similarity.				muscle filament sliding|regulation of ATPase activity	cytosol|muscle thin filament tropomyosin	actin binding|structural constituent of muscle			ovary(1)	1	all_epithelial(49;0.121)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TCATATTTGCGGTCTGAATCC	0.542													28	120					0	0	1	0	0
TLN1	7094	broad.mit.edu	37	9	35700223	35700224	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35700223_35700224GG>AA	uc003zxt.2	-	49	6978_6979	c.6624_6625CC>TT	c.(6622-6627)AGCCGC>AGTTGC	p.R2209C		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	2209					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			ATAGCACGGCGGCTCAGATTGG	0.535													9	79					0	0	1	0	0
NPR2	4882	broad.mit.edu	37	9	35792664	35792664	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35792664C>T	uc003zyd.2	+	1	259	c.259C>T	c.(259-261)CTC>TTC	p.L87F	NPR2_uc010mlb.2_Missense_Mutation_p.L87F	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	87	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	CGCTGTGGACCTCAAGCTGTA	0.662													34	101					0	0	1	0	0
NPR2	4882	broad.mit.edu	37	9	35793034	35793034	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35793034C>T	uc003zyd.2	+	1	629	c.629C>T	c.(628-630)CCC>CTC	p.P210L	NPR2_uc010mlb.2_Missense_Mutation_p.P210L	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	210	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	CCAGGGGGCCCCGAGCAGGCC	0.637													6	35					0	0	1	0	0
NPR2	4882	broad.mit.edu	37	9	35801080	35801080	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35801080C>T	uc003zyd.2	+	7	1365	c.1365C>T	c.(1363-1365)ACC>ACT	p.T455T	NPR2_uc010mlb.2_Silent_p.T455T	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	455	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	CACTTTCAACCCTGGCAATTG	0.507													51	144					0	0	1	0	0
NPR2	4882	broad.mit.edu	37	9	35801756	35801756	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35801756C>T	uc003zyd.2	+	8	1553	c.1553C>T	c.(1552-1554)TCG>TTG	p.S518L	NPR2_uc010mlb.2_Missense_Mutation_p.S518L	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	518	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	CTCACACTGTCGCTGGTGAGC	0.542													19	95					0	0	1	0	0
NPR2	4882	broad.mit.edu	37	9	35802512	35802512	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35802512C>T	uc003zyd.2	+	11	1723	c.1723C>T	c.(1723-1725)CAG>TAG	p.Q575*	NPR2_uc010mlb.2_Nonsense_Mutation_p.Q575*	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	575	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	GAGAGATGTTCAGTTCAACCA	0.413													7	61					0	0	1	0	0
NPR2	4882	broad.mit.edu	37	9	35802590	35802590	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35802590C>T	uc003zyd.2	+	11	1801	c.1801C>T	c.(1801-1803)CGT>TGT	p.R601C	NPR2_uc010mlb.2_Missense_Mutation_p.R601C	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	601	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	ATACTGTCCTCGTGGGAGTTT	0.488													22	65					0	0	1	0	0
SPAG8	26206	broad.mit.edu	37	9	35811403	35811403	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35811403G>A	uc003zye.2	-	2	755	c.640C>T	c.(640-642)CCT>TCT	p.P214S	SPAG8_uc003zyf.2_Missense_Mutation_p.P131S|SPAG8_uc003zyg.2_Missense_Mutation_p.P214S	NM_172312	NP_758516	Q99932	SPAG8_HUMAN	sperm associated antigen 8 isoform 2	214						acrosomal vesicle|membrane				ovary(1)	1	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			AACCCTGGAGGAATACAGGGG	0.493													25	118					0	0	1	0	0
TMEM8B	51754	broad.mit.edu	37	9	35846306	35846306	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35846306G>A	uc003zym.2	+	9	1440	c.425G>A	c.(424-426)AGG>AAG	p.R142K	TMEM8B_uc003zyk.2_Missense_Mutation_p.R142K|TMEM8B_uc003zyl.2_Missense_Mutation_p.R309K|TMEM8B_uc003zyn.2_Silent_p.Q37Q|TMEM8B_uc003zyo.2_Missense_Mutation_p.R142K	NM_001042589	NP_001036054	A6NDV4	TMM8B_HUMAN	transmembrane protein 8B isoform a	142	Extracellular (Potential).				cell-matrix adhesion|regulation of growth|regulation of mitotic cell cycle	cell surface|endoplasmic reticulum|integral to membrane|mitochondrion|nucleus|plasma membrane	protein binding			ovary(1)	1						AGGGTTGCCAGGCTGCGAATC	0.687													9	69					0	0	1	0	0
TMEM8B	51754	broad.mit.edu	37	9	35853227	35853227	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35853227C>T	uc003zym.2	+	13	2071	c.1056C>T	c.(1054-1056)TTC>TTT	p.F352F	TMEM8B_uc003zyo.2_Silent_p.F352F	NM_001042589	NP_001036054	A6NDV4	TMM8B_HUMAN	transmembrane protein 8B isoform a	352	Helical; (Potential).				cell-matrix adhesion|regulation of growth|regulation of mitotic cell cycle	cell surface|endoplasmic reticulum|integral to membrane|mitochondrion|nucleus|plasma membrane	protein binding			ovary(1)	1						CCAGTCTCTTCGCCCTGGGGA	0.612													28	105					0	0	1	0	0
OR13J1	392309	broad.mit.edu	37	9	35869520	35869520	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35869520C>T	uc011lph.1	-	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001004487	NP_001004487	Q8NGT2	O13J1_HUMAN	olfactory receptor, family 13, subfamily J,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_epithelial(49;0.169)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00494)|STAD - Stomach adenocarcinoma(86;0.194)			CCTCCTTGTTCCTCAGGCTGT	0.592													13	42					0	0	1	0	0
OR13J1	392309	broad.mit.edu	37	9	35870088	35870088	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:35870088C>T	uc011lph.1	-	1	311	c.311G>A	c.(310-312)AGC>AAC	p.S104N		NM_001004487	NP_001004487	Q8NGT2	O13J1_HUMAN	olfactory receptor, family 13, subfamily J,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_epithelial(49;0.169)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00494)|STAD - Stomach adenocarcinoma(86;0.194)			CGTGGACAGGCTCAGACACAT	0.597													7	44					0	0	1	0	0
RECK	8434	broad.mit.edu	37	9	36117063	36117063	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:36117063C>T	uc003zyv.2	+	17	2228	c.2142C>T	c.(2140-2142)CTC>CTT	p.L714L	RECK_uc003zyw.2_Silent_p.L586L|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	714	Kazal-like 2.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			CAAGACAGCTCGCGTGTGACC	0.458													21	64					0	0	1	0	0
RECK	8434	broad.mit.edu	37	9	36122898	36122898	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:36122898C>T	uc003zyv.2	+	21	2858	c.2772C>T	c.(2770-2772)GTC>GTT	p.V924V	RECK_uc003zyw.2_Silent_p.V796V|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	924						anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			CGTCCCATGTCCCTCTCTCTG	0.557													35	126					0	0	1	0	0
CCIN	881	broad.mit.edu	37	9	36169514	36169514	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:36169514C>T	uc003zzb.3	+	1	126	c.15C>T	c.(13-15)TTC>TTT	p.F5F		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	5					cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			AATTGGAATTCACGGAGAAAA	0.493													12	40					0	0	1	0	0
CCIN	881	broad.mit.edu	37	9	36170360	36170360	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:36170360G>A	uc003zzb.3	+	1	972	c.861G>A	c.(859-861)CAG>CAA	p.Q287Q		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	287	Kelch 1.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			TCGGTGGCCAGAAGGCCCACG	0.572													10	74					0	0	1	0	0
CCIN	881	broad.mit.edu	37	9	36170723	36170723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:36170723G>A	uc003zzb.3	+	1	1335	c.1224G>A	c.(1222-1224)AAG>AAA	p.K408K		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	408	Kelch 3.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			TGGCAGGAAAGATGAGCATCC	0.547													28	68					0	0	1	0	0
RNF38	152006	broad.mit.edu	37	9	36352839	36352839	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:36352839G>A	uc003zzh.2	-	8	1269	c.1078C>T	c.(1078-1080)CCT>TCT	p.P360S	RNF38_uc003zzi.2_Missense_Mutation_p.P310S|RNF38_uc003zzj.2_Missense_Mutation_p.P277S|RNF38_uc003zzk.2_Missense_Mutation_p.P277S|RNF38_uc003zzl.2_Missense_Mutation_p.P284S|RNF38_uc003zzm.2_Missense_Mutation_p.P277S	NM_022781	NP_073618	Q9H0F5	RNF38_HUMAN	ring finger protein 38 isoform 1	360	Pro-rich.						zinc ion binding			central_nervous_system(1)	1			STAD - Stomach adenocarcinoma(86;0.228)			ATAAATGGAGGATAAGGCTGC	0.403													5	31					0	0	1	0	0
MELK	9833	broad.mit.edu	37	9	36651812	36651812	+	Missense_Mutation	SNP	C	T	T	rs140963190		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:36651812C>T	uc003zzn.2	+	12	1129	c.991C>T	c.(991-993)CGT>TGT	p.R331C	MELK_uc011lpm.1_Missense_Mutation_p.R200C|MELK_uc011lpn.1_Missense_Mutation_p.R331C|MELK_uc011lpo.1_Missense_Mutation_p.R137C|MELK_uc010mll.2_Missense_Mutation_p.R299C|MELK_uc011lpp.1_Missense_Mutation_p.R283C|MELK_uc010mlm.2_Missense_Mutation_p.R260C|MELK_uc011lpq.1_Missense_Mutation_p.R137C|MELK_uc011lpr.1_Missense_Mutation_p.R260C|MELK_uc011lps.1_Missense_Mutation_p.R251C	NM_014791	NP_055606	Q14680	MELK_HUMAN	maternal embryonic leucine zipper kinase	331						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		Acute lymphoblastic leukemia(2;1.09e-08)|all_hematologic(2;8.15e-06)	STAD - Stomach adenocarcinoma(86;0.228)			AAAACCAGTTCGTTTAAGGCT	0.468													109	224					0	0	1	0	0
PAX5	5079	broad.mit.edu	37	9	36846859	36846859	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:36846859G>A	uc003zzo.1	-	9	1528	c.1080C>T	c.(1078-1080)TTC>TTT	p.F360F	PAX5_uc011lpt.1_Silent_p.F156F|PAX5_uc011lpu.1_RNA|PAX5_uc011lpv.1_Intron|PAX5_uc011lpw.1_Intron|PAX5_uc011lpx.1_Silent_p.F260F|PAX5_uc011lpy.1_Intron|PAX5_uc010mls.1_Intron|PAX5_uc011lpz.1_Silent_p.F317F|PAX5_uc011lqa.1_Silent_p.F252F|PAX5_uc010mlq.1_RNA|PAX5_uc011lqb.1_RNA|PAX5_uc010mlo.1_Silent_p.F326F|PAX5_uc010mlp.1_Intron|PAX5_uc011lqc.1_Intron|PAX5_uc010mlr.1_Missense_Mutation_p.S283F	NM_016734	NP_057953	Q02548	PAX5_HUMAN	paired box 5	360					cell differentiation|humoral immune response|nervous system development|organ morphogenesis|spermatogenesis|transcription from RNA polymerase II promoter	nucleus	DNA binding	p.?(11)	PAX5/JAK2(18)	haematopoietic_and_lymphoid_tissue(142)|lung(3)|central_nervous_system(2)	147		all_cancers(2;3.46e-10)|Acute lymphoblastic leukemia(2;7.09e-56)|all_hematologic(2;6.65e-44)		GBM - Glioblastoma multiforme(29;0.0108)		CCGGGTTGGGGAACCTCCAGG	0.627			T|Mis|D|F|S	IGH@|ETV6|PML|FOXP1|ZNF521|ELN	NHL|ALL|B-ALL								9	21					0	0	1	0	0
POLR1E	64425	broad.mit.edu	37	9	37486584	37486584	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37486584C>T	uc003zzz.1	+	1	435	c.147C>T	c.(145-147)TTC>TTT	p.F49F	POLR1E_uc011lqj.1_Intron|POLR1E_uc003zzy.1_Intron|POLR1E_uc011lqk.1_Intron	NM_022490	NP_071935	Q9GZS1	RPA49_HUMAN	RNA polymerase I associated factor 53	49					rRNA transcription	cell junction|cytoplasm|nucleolus	DNA binding|DNA-directed RNA polymerase activity|protein binding				0				GBM - Glioblastoma multiforme(29;0.00851)|Lung(182;0.229)		ACCCGAGCTTCCTTGCCATCC	0.527													11	11					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37707446	37707446	+	Silent	SNP	G	A	A	rs112589819		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37707446G>A	uc004aag.1	+	3	179	c.135G>A	c.(133-135)AGG>AGA	p.R45R	FRMPD1_uc004aah.1_Silent_p.R45R	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	45						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GGCCCGCCAGGAACCCAACTC	0.498													28	70					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37724314	37724314	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37724314G>A	uc004aag.1	+	7	653	c.609G>A	c.(607-609)GTG>GTA	p.V203V	FRMPD1_uc004aah.1_Silent_p.V203V|FRMPD1_uc011lqm.1_Silent_p.V25V|FRMPD1_uc011lqn.1_Silent_p.V72V	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	203	FERM.					cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		ACACAACCGTGAAGGTATTAA	0.463													7	44					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37731005	37731005	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37731005G>A	uc004aag.1	+	9	807	c.763G>A	c.(763-765)GAC>AAC	p.D255N	FRMPD1_uc004aah.1_Missense_Mutation_p.D255N|FRMPD1_uc011lqm.1_Missense_Mutation_p.D77N|FRMPD1_uc011lqn.1_Missense_Mutation_p.D124N	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	255	FERM.					cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GGAGTCACATGACTACCGCTG	0.502													17	56					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37740201	37740201	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37740201C>T	uc004aag.1	+	15	1720	c.1676C>T	c.(1675-1677)CCT>CTT	p.P559L	FRMPD1_uc004aah.1_Missense_Mutation_p.P559L|FRMPD1_uc011lqm.1_Missense_Mutation_p.P381L|FRMPD1_uc011lqn.1_Missense_Mutation_p.P428L	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	559						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GAGGAGCAGCCTCCTGGGAAC	0.632													13	61					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37740549	37740549	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37740549C>T	uc004aag.1	+	15	2068	c.2024C>T	c.(2023-2025)TCC>TTC	p.S675F	FRMPD1_uc004aah.1_Missense_Mutation_p.S675F|FRMPD1_uc011lqm.1_Missense_Mutation_p.S497F|FRMPD1_uc011lqn.1_Missense_Mutation_p.S544F	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	675						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		ACAGAGTTTTCCGAGAGTGCT	0.582													6	37					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37744553	37744553	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37744553C>T	uc004aag.1	+	16	2568	c.2524C>T	c.(2524-2526)CTA>TTA	p.L842L	FRMPD1_uc004aah.1_Silent_p.L842L	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	842						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		AAGGTCTTTCCTACAGACCGA	0.557													28	52					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37744643	37744643	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37744643G>A	uc004aag.1	+	16	2658	c.2614G>A	c.(2614-2616)GAG>AAG	p.E872K	FRMPD1_uc004aah.1_Missense_Mutation_p.E872K	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	872						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		CTATGACAGGGAGCCCTACCT	0.592													16	43					0	0	1	0	0
SHB	6461	broad.mit.edu	37	9	37948651	37948651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37948651C>T	uc004aax.2	-	5	1895	c.1327G>A	c.(1327-1329)GAC>AAC	p.D443N		NM_003028	NP_003019	Q15464	SHB_HUMAN	Src homology 2 domain containing adaptor protein	443	SH2.				angiogenesis|apoptosis|cell differentiation|signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity			central_nervous_system(2)|skin(1)	3		all_epithelial(88;0.122)		GBM - Glioblastoma multiforme(29;3.27e-05)|Lung(182;0.0658)		AGGGAGTAGTCATGCTTGCTG	0.627													6	56					0	0	1	0	0
SHB	6461	broad.mit.edu	37	9	37974775	37974775	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:37974775G>A	uc004aax.2	-	3	1466	c.898C>T	c.(898-900)CCT>TCT	p.P300S		NM_003028	NP_003019	Q15464	SHB_HUMAN	Src homology 2 domain containing adaptor protein	300	Mediates interaction with LAT, FAK1, JAK1 and JAK3.				angiogenesis|apoptosis|cell differentiation|signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity			central_nervous_system(2)|skin(1)	3		all_epithelial(88;0.122)		GBM - Glioblastoma multiforme(29;3.27e-05)|Lung(182;0.0658)		GGTTCGTAAGGGGTGTCATAT	0.537													28	54					0	0	1	0	0
ALDH1B1	219	broad.mit.edu	37	9	38395848	38395848	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:38395848C>T	uc004aay.2	+	2	215	c.103C>T	c.(103-105)CCC>TCC	p.P35S		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	35					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	CCCAGACATCCCCTACAACCA	0.612													21	55					0	0	1	0	0
ALDH1B1	219	broad.mit.edu	37	9	38397257	38397257	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:38397257G>A	uc004aay.2	+	2	1624	c.1512G>A	c.(1510-1512)GAG>GAA	p.E504E		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	504					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	CCTACACAGAGGTAAAGACGG	0.532													7	29					0	0	1	0	0
IGFBPL1	347252	broad.mit.edu	37	9	38413338	38413338	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:38413338G>A	uc004aba.2	-	3	606	c.583C>T	c.(583-585)CCT>TCT	p.P195S		NM_001007563	NP_001007564	Q8WX77	IBPL1_HUMAN	insulin-like growth factor binding protein-like	195	Ig-like C2-type.				regulation of cell growth	extracellular region	insulin-like growth factor binding				0				GBM - Glioblastoma multiforme(29;0.0437)|Lung(182;0.116)		GTGCCCTCAGGGGACTTCGTG	0.577													12	56					0	0	1	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39109233	39109233	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:39109233C>T	uc004abi.2	-	15	2528	c.2289G>A	c.(2287-2289)CAG>CAA	p.Q763Q	CNTNAP3_uc004abj.2_Silent_p.Q762Q|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Silent_p.Q763Q	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	763	Fibrinogen C-terminal.|Extracellular (Potential).				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TCATCACAATCTGAGTGACTG	0.463													17	27					0	0	1	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39149936	39149936	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:39149936G>A	uc004abi.2	-	10	1755	c.1516C>T	c.(1516-1518)CCC>TCC	p.P506S	CNTNAP3_uc004abj.2_Missense_Mutation_p.P506S|CNTNAP3_uc011lqr.1_Intron|CNTNAP3_uc004abk.1_Missense_Mutation_p.P506S|CNTNAP3_uc011lqs.1_Intron|CNTNAP3_uc004abl.1_Intron	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	506	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CCTCCCAGGGGGCTTTTACAT	0.493													15	48					0	0	1	0	0
FAM75A2	642265	broad.mit.edu	37	9	39888172	39888172	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:39888172G>A	uc004abp.2	+	4	1188	c.1159G>A	c.(1159-1161)GAG>AAG	p.E387K		NM_001040065	NP_001035154	Q5RGS2	F75A2_HUMAN	hypothetical protein LOC642265	387						integral to membrane					0				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GAACATGGGAGAGAACTCGAA	0.478													45	42					0	0	1	0	0
FAM75A3	727830	broad.mit.edu	37	9	40702809	40702809	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:40702809G>A	uc010mmj.2	+	4	495	c.466G>A	c.(466-468)GAT>AAT	p.D156N		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	156	Pro-rich.					integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		AGCTTCCCCGGATCCTCAAGC	0.597													56	260					0	0	1	0	0
ZNF658	26149	broad.mit.edu	37	9	40774191	40774191	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:40774191G>A	uc004abs.2	-	5	1236	c.1084C>T	c.(1084-1086)CTC>TTC	p.L362F	ZNF658_uc010mmm.1_Missense_Mutation_p.L362F|ZNF658_uc010mmn.1_Missense_Mutation_p.L362F	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	362	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TTCTGGTAGAGGGCATCTGTA	0.363													89	195					0	0	1	0	0
ZNF658	26149	broad.mit.edu	37	9	40774549	40774549	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:40774549G>A	uc004abs.2	-	5	878	c.726C>T	c.(724-726)TCC>TCT	p.S242S	ZNF658_uc010mmm.1_Silent_p.S242S|ZNF658_uc010mmn.1_Silent_p.S242S	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	242					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CATCCTTACAGGACTTTTCTC	0.328													24	93					0	0	1	0	0
ZNF658	26149	broad.mit.edu	37	9	40774551	40774551	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:40774551A>T	uc004abs.2	-	5	876	c.724T>A	c.(724-726)TCC>ACC	p.S242T	ZNF658_uc010mmm.1_Missense_Mutation_p.S242T|ZNF658_uc010mmn.1_Missense_Mutation_p.S242T	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	242					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TCCTTACAGGACTTTTCTCCT	0.328													24	90					0	0	1	0	0
KGFLP2	654466	broad.mit.edu	37	9	41962660	41962660	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:41962660C>T	uc004aca.3	-	3		c.849G>A				NR_003670				Homo sapiens cDNA FLJ76381 complete cds.												0						ATTTCCCCTCCGTTGTTTGTC	0.358													5	47					0	0	1	0	0
FAM75A6	389730	broad.mit.edu	37	9	43625229	43625229	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:43625229G>A	uc011lrb.1	-	4	3487	c.3458C>T	c.(3457-3459)CCT>CTT	p.P1153L		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	1153						integral to membrane					0						TACTGAAGGAGGCTGTTTCTT	0.453													13	114					0	0	1	0	0
FAM75A6	389730	broad.mit.edu	37	9	43625382	43625382	+	Missense_Mutation	SNP	G	A	A	rs143826416	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:43625382G>A	uc011lrb.1	-	4	3334	c.3305C>T	c.(3304-3306)CCT>CTT	p.P1102L		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	1102						integral to membrane					0						CTTGTGAATAGGGGGAAACAT	0.483													8	102					0	0	1	0	0
FAM75A6	389730	broad.mit.edu	37	9	43626727	43626727	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:43626727T>A	uc011lrb.1	-	4	1989	c.1960A>T	c.(1960-1962)AAG>TAG	p.K654*		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	654						integral to membrane					0						AACTTCACCTTCTGTGCCTCC	0.567													47	50					0	0	1	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627428	43627428	+	Missense_Mutation	SNP	G	A	A	rs11261835	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:43627428G>A	uc011lrb.1	-	4	1288	c.1259C>T	c.(1258-1260)CCC>CTC	p.P420L		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	420						integral to membrane					0						GTGCAGAGAGGGGAGGCCCCA	0.498													10	183					0	0	1	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627663	43627663	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:43627663C>T	uc011lrb.1	-	4	1053	c.1024G>A	c.(1024-1026)GAA>AAA	p.E342K		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	342						integral to membrane					0						TCTTTTTCTTCCCAAATGTTG	0.428													29	126					0	0	1	0	0
ANKRD20A3	441425	broad.mit.edu	37	9	67938622	67938622	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:67938622G>A	uc004aeu.2	+	6	869	c.757G>A	c.(757-759)GAA>AAA	p.E253K	ANKRD20A3_uc010mnn.2_Missense_Mutation_p.E253K	NM_001012419	NP_001012419	Q5VUR7	A20A3_HUMAN	ankyrin repeat domain 20 family, member A3	253											0						ACAAATTTTGGAACATAAAAA	0.229													5	27					0	0	1	0	0
PGM5P2	595135	broad.mit.edu	37	9	69113627	69113627	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:69113627C>T	uc004aff.3	-	5		c.1027G>A				NR_002836				Homo sapiens phosphoglucomutase 5 pseudogene 2, mRNA (cDNA clone IMAGE:4121651), with apparent retained intron.												0						CCATATTCTCCTCCTTTCATT	0.458													6	60					0	0	1	0	0
ANKRD20A4	728747	broad.mit.edu	37	9	69420413	69420413	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:69420413G>A	uc004afn.2	+	13	1415	c.1303G>A	c.(1303-1305)GAA>AAA	p.E435K		NM_001098805	NP_001092275	Q4UJ75	A20A4_HUMAN	ankyrin repeat domain 20 family, member A4	435	Potential.										0						GAAGCTGAAGGAAGAGCATGA	0.303													11	192					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	69440123	69440123	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:69440123G>A	uc010mnx.1	+	3	376	c.207G>A	c.(205-207)ATG>ATA	p.M69I		NM_001098806	NP_001092276			coiled-coil domain containing 29																		TTTTATCTATGAAAAAAGTAC	0.318													6	68					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	69634669	69634669	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:69634669G>A	uc004afu.3	-	3		c.402C>T								Homo sapiens aquaporin 7 pseudogene 2, mRNA (cDNA clone IMAGE:30406582).																		GATGCGGGGGGGGCAGGTCCC	0.572													12	191					0	0	1	0	0
FOXD4L5	653427	broad.mit.edu	37	9	70177179	70177179	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:70177179G>A	uc010moc.2	-	1	1637	c.805C>T	c.(805-807)CGC>TGC	p.R269C		NM_001126334	NP_001119806	Q5VV16	FX4L5_HUMAN	forkhead box D4-like 5	269					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						AGTAGGTAGCGAAGAGGATGC	0.706													8	26					0	0	1	0	0
PGM5	5239	broad.mit.edu	37	9	71114247	71114247	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71114247G>A	uc004agr.2	+	10	1813	c.1584G>A	c.(1582-1584)AGG>AGA	p.R528R		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	528					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						GCTACGAGAGGGATCCCAGCG	0.577													27	69					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71478775	71478775	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71478775G>A	uc004agu.2	+	5	397	c.92G>A	c.(91-93)GGT>GAT	p.G31D	PIP5K1B_uc011lrq.1_Missense_Mutation_p.G31D|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	31	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		GCTATTAAAGGTGCTATTCAG	0.423													36	149					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71532512	71532512	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71532512C>T	uc004agu.2	+	9	1125	c.820C>T	c.(820-822)CAT>TAT	p.H274Y	PIP5K1B_uc011lrq.1_Missense_Mutation_p.H274Y|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	274	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		GTTGGGAATTCATTTCCTGGA	0.473													99	295					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71532629	71532629	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71532629G>A	uc004agu.2	+	9	1242	c.937G>A	c.(937-939)GGT>AGT	p.G313S	PIP5K1B_uc011lrq.1_Missense_Mutation_p.G313S|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	313	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		ATCTATCCAGGGTCCAGGGAA	0.527													24	94					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71538258	71538258	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71538258G>A	uc004agu.2	+	12	1462	c.1157G>A	c.(1156-1158)AGA>AAA	p.R386K	PIP5K1B_uc011lrq.1_Missense_Mutation_p.R386K|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	386	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		TATGCAGACAGATTTCTTAAG	0.328													17	71					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71549884	71549884	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71549884C>T	uc004agu.2	+	13	1585	c.1280C>T	c.(1279-1281)TCA>TTA	p.S427L	PIP5K1B_uc011lrq.1_Missense_Mutation_p.S427L|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	427						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		ATTGTGTCCTCAATTAGCCAG	0.433													20	73					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71555572	71555572	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71555572C>T	uc004agu.2	+	14	1673	c.1368C>T	c.(1366-1368)TCC>TCT	p.S456S	PIP5K1B_uc011lrq.1_Silent_p.S456S|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	456						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		CCCTGGGATCCCGACACAGGC	0.433													32	147					0	0	1	0	0
PRKACG	5568	broad.mit.edu	37	9	71628475	71628475	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71628475C>T	uc004agy.2	-	1	565	c.534G>A	c.(532-534)CAG>CAA	p.Q178Q		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	178	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						GCAGGTAGCCCTGCTGGTCGA	0.632													7	25					0	0	1	0	0
PRKACG	5568	broad.mit.edu	37	9	71628817	71628817	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71628817C>T	uc004agy.2	-	1	223	c.192G>A	c.(190-192)CAG>CAA	p.Q64Q		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	64	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						CGCCGGTCTCCTGGTGCCTCA	0.607													10	78					0	0	1	0	0
PRKACG	5568	broad.mit.edu	37	9	71628876	71628876	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71628876C>T	uc004agy.2	-	1	164	c.133G>A	c.(133-135)GAA>AAA	p.E45K		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	45	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						CTGAGCCGTTCGAACTGATCC	0.602													13	55					0	0	1	0	0
TJP2	9414	broad.mit.edu	37	9	71833266	71833266	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:71833266C>T	uc004ahe.2	+	4	533	c.333C>T	c.(331-333)GTC>GTT	p.V111V	TJP2_uc011lrs.1_Silent_p.V88V|TJP2_uc004ahb.1_Silent_p.V88V|TJP2_uc011lrt.1_Silent_p.V88V|TJP2_uc004ahd.2_Silent_p.V111V|TJP2_uc004ahf.2_Silent_p.V111V|TJP2_uc011lru.1_Silent_p.V115V|TJP2_uc011lrv.1_Silent_p.V133V	NM_004817	NP_004808	Q9UDY2	ZO2_HUMAN	tight junction protein 2 (zona occludens 2)	111	PDZ 1.				cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding				0						GTGGGAAGGTCGCTGCTATTG	0.433													25	46					0	0	1	0	0
FAM189A2	9413	broad.mit.edu	37	9	72000820	72000820	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72000820C>T	uc010mon.1	+	9	917	c.813C>T	c.(811-813)ACC>ACT	p.T271T	FAM189A2_uc004ahg.2_Silent_p.T271T|FAM189A2_uc010moo.1_Silent_p.T106T	NM_001127608	NP_001121080	Q15884	F1892_HUMAN	chromosome 9 open reading frame 61 precursor	271						integral to membrane					0						CCTTGAGGACCAGGTCGAAGA	0.547													10	33					0	0	1	0	0
APBA1	320	broad.mit.edu	37	9	72071175	72071175	+	Silent	SNP	G	A	A	rs112803189		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72071175G>A	uc004ahh.2	-	8	2052	c.1776C>T	c.(1774-1776)TTC>TTT	p.F592F		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	592	PID.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						CCTCAGACTCGAAGACGTGGC	0.522													44	157					0	0	1	0	0
APBA1	320	broad.mit.edu	37	9	72086592	72086592	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72086592G>A	uc004ahh.2	-	4	1592	c.1316C>T	c.(1315-1317)TCA>TTA	p.S439L		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	439	Pro-rich.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GGTTGGGAATGAAGCCAAGCT	0.353													27	57					0	0	1	0	0
APBA1	320	broad.mit.edu	37	9	72131027	72131027	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72131027G>A	uc004ahh.2	-	2	1376	c.1100C>T	c.(1099-1101)TCG>TTG	p.S367L		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	367					axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GGTGTAAGGCGAACGGATGGT	0.582													29	78					0	0	1	0	0
APBA1	320	broad.mit.edu	37	9	72131412	72131412	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72131412C>T	uc004ahh.2	-	2	991	c.715G>A	c.(715-717)GAC>AAC	p.D239N		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	239	Munc-18-1 binding.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GAGCGCTCGTCGTAATGGTGC	0.716													11	17					0	0	1	0	0
C9orf135	138255	broad.mit.edu	37	9	72471531	72471531	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72471531G>A	uc004ahl.2	+	3	387	c.322G>A	c.(322-324)GAA>AAA	p.E108K	C9orf135_uc011lrw.1_5'UTR|C9orf135_uc010moq.2_5'UTR|C9orf135_uc011lrx.1_RNA|C9orf135_uc010mop.2_Missense_Mutation_p.E108K	NM_001010940	NP_001010940	Q5VTT2	CI135_HUMAN	hypothetical protein LOC138255	108	Extracellular (Potential).					integral to membrane				ovary(1)	1						AGAATGGGTTGAAATGAAGAG	0.338													24	58					0	0	1	0	0
MAMDC2	256691	broad.mit.edu	37	9	72723336	72723336	+	Missense_Mutation	SNP	G	A	A	rs140390474		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72723336G>A	uc004ahm.2	+	3	975	c.358G>A	c.(358-360)GAA>AAA	p.E120K	MAMDC2_uc004ahn.2_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	120	MAM 1.					endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						GTCAGCTAAGGAACCTTCAGA	0.438													18	54					0	0	1	0	0
MAMDC2	256691	broad.mit.edu	37	9	72724649	72724649	+	Missense_Mutation	SNP	G	A	A	rs146519251		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72724649G>A	uc004ahm.2	+	4	1051	c.434G>A	c.(433-435)GGT>GAT	p.G145D	MAMDC2_uc004ahn.2_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	145	MAM 1.					endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						TTAATAGAAGGTGTACTAGGA	0.403													23	154					0	0	1	0	0
MAMDC2	256691	broad.mit.edu	37	9	72840925	72840925	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72840925G>A	uc004ahm.2	+	14	2655	c.2038G>A	c.(2038-2040)GAC>AAC	p.D680N	MAMDC2_uc004ahn.2_RNA|uc004ahq.1_Intron	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	680						endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						ATATTCTGAGGACTTAAATGA	0.269													14	68					0	0	1	0	0
SMC5	23137	broad.mit.edu	37	9	72967122	72967122	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:72967122C>T	uc004ahr.2	+	25	3298	c.3181C>T	c.(3181-3183)CCT>TCT	p.P1061S	SMC5_uc011lry.1_Missense_Mutation_p.P206S	NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	1061					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						GCAAAATCTTCCTTATTCTGA	0.378													37	96					0	0	1	0	0
TRPM3	80036	broad.mit.edu	37	9	73152144	73152144	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:73152144C>T	uc004aid.2	-	25	4093	c.3849G>A	c.(3847-3849)TCG>TCA	p.S1283S	TRPM3_uc004ahu.2_Silent_p.S1125S|TRPM3_uc004ahv.2_Silent_p.S1085S|TRPM3_uc004ahw.2_Silent_p.S1155S|TRPM3_uc004ahx.2_Silent_p.S1142S|TRPM3_uc004ahy.2_Silent_p.S1145S|TRPM3_uc004ahz.2_Silent_p.S1132S|TRPM3_uc004aia.2_Silent_p.S1130S|TRPM3_uc004aib.2_Silent_p.S1120S|TRPM3_uc004aic.2_Silent_p.S1283S	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1308	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						ACGAGGTCCTCGAGCGGATTT	0.612													33	64					0	0	1	0	0
TRPM3	80036	broad.mit.edu	37	9	73235205	73235205	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:73235205G>A	uc004aid.2	-	15	2124	c.1880C>T	c.(1879-1881)CCT>CTT	p.P627L	TRPM3_uc004ahu.2_Missense_Mutation_p.P457L|TRPM3_uc004ahv.2_Missense_Mutation_p.P429L|TRPM3_uc004ahw.2_Missense_Mutation_p.P499L|TRPM3_uc004ahx.2_Missense_Mutation_p.P486L|TRPM3_uc004ahy.2_Missense_Mutation_p.P489L|TRPM3_uc004ahz.2_Missense_Mutation_p.P476L|TRPM3_uc004aia.2_Missense_Mutation_p.P474L|TRPM3_uc004aib.2_Missense_Mutation_p.P464L|TRPM3_uc004aic.2_Missense_Mutation_p.P627L	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	652	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GTTGATCTCAGGATCATCCAA	0.498													48	157					0	0	1	0	0
TRPM3	80036	broad.mit.edu	37	9	73442842	73442842	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:73442842C>T	uc004aid.2	-	6	1138	c.894G>A	c.(892-894)GGG>GGA	p.G298G	TRPM3_uc004ahu.2_Silent_p.G128G|TRPM3_uc004ahv.2_Silent_p.G128G|TRPM3_uc004ahw.2_Silent_p.G145G|TRPM3_uc004ahx.2_Silent_p.G145G|TRPM3_uc004ahy.2_Silent_p.G145G|TRPM3_uc004ahz.2_Silent_p.G145G|TRPM3_uc004aia.2_Silent_p.G145G|TRPM3_uc004aib.2_Silent_p.G145G|TRPM3_uc004aic.2_Silent_p.G298G|TRPM3_uc010mor.2_Silent_p.G298G|TRPM3_uc004aie.2_Silent_p.G145G|TRPM3_uc004aif.2_Silent_p.G145G|TRPM3_uc004aig.2_Silent_p.G145G|TRPM3_uc004aii.2_Silent_p.G300G	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	298	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						TTCCAGTGGTCCCGTTGTCAG	0.483													52	116					0	0	1	0	0
TRPM3	80036	broad.mit.edu	37	9	73477952	73477952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:73477952C>T	uc004aid.2	-	3	578	c.334G>A	c.(334-336)GAA>AAA	p.E112K	TRPM3_uc004ahw.2_5'UTR|TRPM3_uc004ahx.2_5'UTR|TRPM3_uc004ahy.2_5'UTR|TRPM3_uc004ahz.2_5'UTR|TRPM3_uc004aia.2_5'UTR|TRPM3_uc004aib.2_5'UTR|TRPM3_uc004aic.2_Missense_Mutation_p.E112K|TRPM3_uc010mor.2_Missense_Mutation_p.E112K|TRPM3_uc004aie.2_5'UTR|TRPM3_uc004aif.2_5'UTR|TRPM3_uc004aig.2_5'UTR|TRPM3_uc004aii.2_Missense_Mutation_p.E114K	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	112	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						AGGCGACTTTCATTTTTCTCA	0.488													30	104					0	0	1	0	0
TMEM2	23670	broad.mit.edu	37	9	74332987	74332987	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:74332987G>A	uc011lsa.1	-	13	2816	c.2276C>T	c.(2275-2277)CCT>CTT	p.P759L	TMEM2_uc010mos.2_Missense_Mutation_p.P696L|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	759						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		ATCCTGATGAGGTCGAAATCT	0.348													13	103					0	0	1	0	0
TMEM2	23670	broad.mit.edu	37	9	74347430	74347431	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:74347430_74347431GG>AA	uc011lsa.1	-	7	1939_1940	c.1399_1400CC>TT	c.(1399-1401)CCT>TTT	p.P467F	TMEM2_uc010mos.2_Missense_Mutation_p.P404F|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	467						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		CAGGAACTGAGGGGTTTCTGGT	0.411													22	35					0	0	1	0	0
TMEM2	23670	broad.mit.edu	37	9	74361203	74361203	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:74361203G>A	uc011lsa.1	-	3	926	c.386C>T	c.(385-387)TCT>TTT	p.S129F	TMEM2_uc010mos.2_Missense_Mutation_p.S129F|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	129	G8.					integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		TTGCTTTGCAGAATCTTGTCC	0.433													10	78					0	0	1	0	0
GDA	9615	broad.mit.edu	37	9	74825629	74825629	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:74825629C>T	uc004aiq.2	+	4	594	c.411C>T	c.(409-411)ACC>ACT	p.T137T	GDA_uc011lse.1_Silent_p.T63T|GDA_uc011lsf.1_Silent_p.T63T|GDA_uc004air.2_Silent_p.T137T|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Silent_p.T95T|GDA_uc004ait.1_Silent_p.T63T	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	137					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		ATGGAACAACCACAGCTTGTT	0.418													11	51					0	0	1	0	0
GDA	9615	broad.mit.edu	37	9	74860079	74860079	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:74860079G>A	uc004aiq.2	+	12	1334	c.1151G>A	c.(1150-1152)GGT>GAT	p.G384D	GDA_uc011lse.1_Missense_Mutation_p.G310D|GDA_uc011lsf.1_Missense_Mutation_p.G310D|GDA_uc004air.2_Missense_Mutation_p.G384D|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Missense_Mutation_p.G306D	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	384					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		GGGCTGGATGGTGAGATTGGA	0.448													34	133					0	0	1	0	0
GDA	9615	broad.mit.edu	37	9	74863238	74863238	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:74863238C>T	uc004aiq.2	+	14	1528	c.1345C>T	c.(1345-1347)CCG>TCG	p.P449S	GDA_uc011lse.1_Missense_Mutation_p.P375S|GDA_uc011lsf.1_Missense_Mutation_p.P375S|GDA_uc004air.2_Missense_Mutation_p.P449S|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Missense_Mutation_p.P371S	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	449					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		GCAGGTGGTTCCGTTTTCCAG	0.448													24	97					0	0	1	0	0
TMC1	117531	broad.mit.edu	37	9	75387345	75387345	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:75387345C>T	uc004aiz.1	+	13	1298	c.758C>T	c.(757-759)TCC>TTC	p.S253F	TMC1_uc010moz.1_Missense_Mutation_p.S211F|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.S107F|TMC1_uc010mpa.1_Missense_Mutation_p.S107F	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	253	Extracellular (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						GCACAATATTCCGTTCTCTTT	0.383													27	260					0	0	1	0	0
TMC1	117531	broad.mit.edu	37	9	75403345	75403345	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:75403345C>T	uc004aiz.1	+	14	1515	c.975C>T	c.(973-975)ATC>ATT	p.I325I	TMC1_uc010moz.1_Silent_p.I283I|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Silent_p.I179I|TMC1_uc010mpa.1_Silent_p.I179I	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	325	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						ACTACCTGATCGGCAATCCTG	0.398													21	55					0	0	1	0	0
ALDH1A1	216	broad.mit.edu	37	9	75533671	75533671	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:75533671C>T	uc004ajd.2	-	8	868	c.815G>A	c.(814-816)GGA>GAA	p.G272E	ALDH1A1_uc011lsh.1_Missense_Mutation_p.G193E|ALDH1A1_uc011lsg.1_Missense_Mutation_p.G98E	NM_000689	NP_000680	P00352	AL1A1_HUMAN	aldehyde dehydrogenase 1A1	272					cellular aldehyde metabolic process|ethanol oxidation|xenobiotic metabolic process	cytosol	aldehyde dehydrogenase (NAD) activity|androgen binding|Ras GTPase activator activity|retinal dehydrogenase activity			ovary(3)|lung(1)	4					NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	AGGGCTCTTTCCTCCAAGCTC	0.463													16	91					0	0	1	0	0
RORB	6096	broad.mit.edu	37	9	77257578	77257578	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77257578C>T	uc004aji.2	+	4	566	c.517C>T	c.(517-519)CAG>TAG	p.Q173*	RORB_uc004ajh.2_Nonsense_Mutation_p.Q162*	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	173	Hinge (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CGATTCCGGTCAGCCGTCCCC	0.507													18	32					0	0	1	0	0
RORB	6096	broad.mit.edu	37	9	77282723	77282723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77282723G>A	uc004aji.2	+	8	1099	c.1050G>A	c.(1048-1050)GTG>GTA	p.V350V	RORB_uc004ajh.2_Silent_p.V339V	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	350	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						ATGACCTAGTGAATGAAGCAT	0.383													33	72					0	0	1	0	0
RORB	6096	broad.mit.edu	37	9	77286708	77286708	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77286708G>A	uc004aji.2	+	9	1197	c.1148G>A	c.(1147-1149)CGA>CAA	p.R383Q	RORB_uc004ajh.2_Missense_Mutation_p.R372Q	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	383	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TCATCAGACCGAGCCTGGCTT	0.408													18	52					0	0	1	0	0
RORB	6096	broad.mit.edu	37	9	77286782	77286782	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77286782C>T	uc004aji.2	+	9	1271	c.1222C>T	c.(1222-1224)CAG>TAG	p.Q408*	RORB_uc004ajh.2_Nonsense_Mutation_p.Q397*	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	408	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						ACATGTGATTCAGAAGAATCA	0.443													20	42					0	0	1	0	0
RORB	6096	broad.mit.edu	37	9	77300426	77300426	+	Silent	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77300426G>C	uc004aji.2	+	10	1354	c.1305G>C	c.(1303-1305)GGG>GGC	p.G435G	RORB_uc004ajh.2_Silent_p.G424G	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	435	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						ACTTGCACGGGGAGAAGCTGC	0.478													41	125					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77343191	77343191	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77343191G>A	uc004ajl.1	-	38	6137	c.5899C>T	c.(5899-5901)CAT>TAT	p.H1967Y	TRPM6_uc004ajk.1_Missense_Mutation_p.H1962Y|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.H918Y|TRPM6_uc010mpd.1_Missense_Mutation_p.H800Y|TRPM6_uc010mpe.1_Missense_Mutation_p.H514Y|TRPM6_uc004ajj.1_Missense_Mutation_p.H923Y	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1967	Alpha-type protein kinase.|Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GAGTTACAATGATGTTTTGCA	0.398													20	62					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77377329	77377329	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77377329C>T	uc004ajl.1	-	26	4496	c.4258G>A	c.(4258-4260)GCA>ACA	p.A1420T	TRPM6_uc004ajk.1_Missense_Mutation_p.A1415T|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.A376T	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1420	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ACTTGCTCTGCCTTGTCTTGT	0.512													27	63					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77377374	77377374	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77377374C>T	uc004ajl.1	-	26	4451	c.4213G>A	c.(4213-4215)GAA>AAA	p.E1405K	TRPM6_uc004ajk.1_Missense_Mutation_p.E1400K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.E361K	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1405	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TCGTGCTTTTCCTTGGGTTCA	0.512													25	61					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77377921	77377921	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77377921C>T	uc004ajl.1	-	26	3904	c.3666G>A	c.(3664-3666)CTG>CTA	p.L1222L	TRPM6_uc004ajk.1_Silent_p.L1217L|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Silent_p.L178L	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1222	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						AAAGGACTTTCAGGGTATCCA	0.473													24	80					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77378026	77378026	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77378026C>T	uc004ajl.1	-	26	3799	c.3561G>A	c.(3559-3561)CTG>CTA	p.L1187L	TRPM6_uc004ajk.1_Silent_p.L1182L|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Silent_p.L143L	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1187	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TCATTTCTTTCAGCTGGAAGT	0.463													9	45					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77386640	77386640	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77386640C>T	uc004ajl.1	-	25	3753	c.3515G>A	c.(3514-3516)CGA>CAA	p.R1172Q	TRPM6_uc004ajk.1_Missense_Mutation_p.R1167Q|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.R128Q	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1172	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CACTCGGATTCGTTCCTCACA	0.368													7	79					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77386669	77386669	+	Missense_Mutation	SNP	C	T	T	rs139669465	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77386669C>T	uc004ajl.1	-	25	3724	c.3486G>A	c.(3484-3486)ATG>ATA	p.M1162I	TRPM6_uc004ajk.1_Missense_Mutation_p.M1157I|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.M118I	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1162	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TCACATCTTCCATCTTCTCAT	0.363													7	83					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77400934	77400934	+	Silent	SNP	G	A	A	rs149732972		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77400934G>A	uc004ajl.1	-	21	3013	c.2775C>T	c.(2773-2775)TTC>TTT	p.F925F	TRPM6_uc004ajk.1_Silent_p.F920F|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Silent_p.F211F	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	925	Helical; (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ATCGAAGGACGAAGCCAGCTG	0.478													32	128					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77415255	77415255	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77415255G>A	uc004ajl.1	-	17	2391	c.2153C>T	c.(2152-2154)CCC>CTC	p.P718L	TRPM6_uc004ajk.1_Missense_Mutation_p.P713L|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Missense_Mutation_p.P96L	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	718	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TGAAACAAAGGGTCGTAATCC	0.463													16	56					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77415293	77415293	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77415293C>T	uc004ajl.1	-	17	2353	c.2115G>A	c.(2113-2115)TCG>TCA	p.S705S	TRPM6_uc004ajk.1_Silent_p.S700S|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Silent_p.S83S	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	705	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TAAGGCAGGTCGAATTGCTCC	0.512													20	59					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77431653	77431653	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77431653G>A	uc004ajl.1	-	11	1478	c.1240C>T	c.(1240-1242)CTG>TTG	p.L414L	TRPM6_uc004ajk.1_Silent_p.L409L|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Silent_p.L414L|TRPM6_uc010mpd.1_Silent_p.L414L|TRPM6_uc010mpe.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	414	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GCCATTGCCAGATTTAATTGC	0.363													24	78					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77442766	77442766	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77442766C>T	uc004ajl.1	-	7	1007	c.769G>A	c.(769-771)GGC>AGC	p.G257S	TRPM6_uc004ajk.1_Missense_Mutation_p.G252S|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.G257S|TRPM6_uc010mpd.1_Missense_Mutation_p.G257S|TRPM6_uc010mpe.1_Missense_Mutation_p.G257S|TRPM6_uc004ajn.1_Missense_Mutation_p.G257S	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	257	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CCATACTTGCCCACGGTCCCA	0.517													10	89					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77455005	77455005	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77455005C>T	uc004ajl.1	-	5	717	c.479G>A	c.(478-480)AGC>AAC	p.S160N	TRPM6_uc004ajk.1_Missense_Mutation_p.S155N|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.S160N|TRPM6_uc010mpd.1_Missense_Mutation_p.S160N|TRPM6_uc010mpe.1_Missense_Mutation_p.S160N|TRPM6_uc004ajn.1_Missense_Mutation_p.S160N	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	160	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CAAACCTTGGCTGAAAATCTC	0.368													19	102					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77455135	77455135	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:77455135C>T	uc004ajl.1	-	5	587	c.349G>A	c.(349-351)GAT>AAT	p.D117N	TRPM6_uc004ajk.1_Missense_Mutation_p.D112N|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.D117N|TRPM6_uc010mpd.1_Missense_Mutation_p.D117N|TRPM6_uc010mpe.1_Missense_Mutation_p.D117N|TRPM6_uc004ajn.1_Missense_Mutation_p.D117N	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	117	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						AGTTTTGTATCATAAGAAGTT	0.403													15	26					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78547308	78547309	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:78547308_78547309AG>CA	uc004ajz.2	+	2	744_745	c.206_207AG>CA	c.(205-207)AAG>ACA	p.K69T	PCSK5_uc004ajy.2_Missense_Mutation_p.K69T|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	69					anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GGGGCCCTGAAGGACTACTACC	0.406													22	45					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78638703	78638703	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:78638703G>A	uc004ajz.2	+	4	999	c.461G>A	c.(460-462)GGA>GAA	p.G154E	PCSK5_uc004ajy.2_Missense_Mutation_p.G154E|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	154	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						AATATCGAAGGAGCCTGGAAG	0.453													16	88					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78784639	78784639	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:78784639G>A	uc004ajz.2	+	13	2177	c.1639G>A	c.(1639-1641)GAA>AAA	p.E547K	PCSK5_uc004ajy.2_Missense_Mutation_p.E547K|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	547	Homo B/P.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TCACTCCATGGAAGGATTCAA	0.413													27	100					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78789991	78789991	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:78789991C>T	uc004ajz.2	+	14	2384	c.1846C>T	c.(1846-1848)CGC>TGC	p.R616C	PCSK5_uc004ajy.2_Missense_Mutation_p.R616C|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	616					anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GGAACGGTTCCGCTATAGCCG	0.488													35	83					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78796447	78796447	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:78796447C>T	uc004ajz.2	+	16	2675	c.2137C>T	c.(2137-2139)CTG>TTG	p.L713L	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_5'UTR	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	713	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TGGATACTTTCTGAATGAAGA	0.478													37	79					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78799654	78799654	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:78799654G>A	uc004ajz.2	+	17	2801	c.2263G>A	c.(2263-2265)GAA>AAA	p.E755K	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Missense_Mutation_p.E29K	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	755	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TAACTGTACAGAATGTAGGGA	0.338													22	23					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	78969134	78969134	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:78969134G>A	uc004akc.1	+	9	1648	c.1428G>A	c.(1426-1428)ACG>ACA	p.T476T						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		AGGACACCACGGGTGAGGGAA	0.597													4	5					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79267429	79267429	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79267429C>T	uc010mpk.2	-	11	8651	c.8527G>A	c.(8527-8529)GAA>AAA	p.E2843K	PRUNE2_uc011lsk.1_Missense_Mutation_p.E92K|PRUNE2_uc011lsl.1_Missense_Mutation_p.E107K|PRUNE2_uc011lsm.1_Missense_Mutation_p.E107K|PRUNE2_uc004akj.3_Missense_Mutation_p.E296K|PRUNE2_uc010mpl.1_Missense_Mutation_p.E296K	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2843					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GAATCTGCTTCATCGGGGGTA	0.393													56	220					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323399	79323399	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79323399G>A	uc010mpk.2	-	8	3915	c.3791C>T	c.(3790-3792)TCC>TTC	p.S1264F		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1264					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CGCATCTGGGGAATGAGTGTC	0.478													16	29					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323636	79323636	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79323636A>T	uc010mpk.2	-	8	3678	c.3554T>A	c.(3553-3555)GTA>GAA	p.V1185E		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1185					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTCCCAATCTACCTGATTTGC	0.498													19	68					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324106	79324106	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79324106C>T	uc010mpk.2	-	8	3208	c.3084G>A	c.(3082-3084)GGG>GGA	p.G1028G		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1028					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TGTCTAGGTTCCCAGGACCTG	0.448													12	21					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324450	79324450	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79324450C>T	uc010mpk.2	-	8	2864	c.2740G>A	c.(2740-2742)GAA>AAA	p.E914K		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	914					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCTACCTTTTCATATACCTTG	0.398													53	208					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324651	79324651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79324651C>T	uc010mpk.2	-	8	2663	c.2539G>A	c.(2539-2541)GAA>AAA	p.E847K		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	847					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCCAGTAGTTCTGAAGAAGAA	0.463													11	28					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79325627	79325627	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79325627G>A	uc010mpk.2	-	8	1687	c.1563C>T	c.(1561-1563)TTC>TTT	p.F521F		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	521					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TGTTGGGGAAGAAGTCATCTG	0.512													9	21					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79326248	79326248	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79326248C>T	uc010mpk.2	-	8	1066	c.942G>A	c.(940-942)CAG>CAA	p.Q314Q		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	314					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GGCAAGGGTTCTGACACTCTT	0.488													10	13					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79328522	79328522	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79328522C>T	uc010mpk.2	-	7	996	c.872G>A	c.(871-873)CGA>CAA	p.R291Q		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	291					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AGCAATCTGTCGTCTCGGCTG	0.502													3	9					0	0	1	0	0
FOXB2	442425	broad.mit.edu	37	9	79635164	79635164	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79635164C>T	uc004ako.1	+	1	594	c.594C>T	c.(592-594)CCC>CCT	p.P198P		NM_001013735	NP_001013757	Q5VYV0	FOXB2_HUMAN	forkhead box B2	198					brain development|embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						CGTCACAGCCCCCGCAGCAAC	0.433													10	17					0	0	1	0	0
VPS13A	23230	broad.mit.edu	37	9	79980472	79980472	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79980472C>T	uc004akr.2	+	60	8568	c.8308C>T	c.(8308-8310)CAT>TAT	p.H2770Y	VPS13A_uc004akp.3_Missense_Mutation_p.H2770Y|VPS13A_uc004akq.3_Missense_Mutation_p.H2770Y|VPS13A_uc004aks.2_Missense_Mutation_p.H2731Y	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2770					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TGAATATTTTCATATATCTCC	0.299													14	76					0	0	1	0	0
VPS13A	23230	broad.mit.edu	37	9	79983001	79983001	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:79983001C>T	uc004akr.2	+	62	8762	c.8502C>T	c.(8500-8502)TTC>TTT	p.F2834F	VPS13A_uc004akp.3_Silent_p.F2834F|VPS13A_uc004akq.3_Silent_p.F2834F|VPS13A_uc004aks.2_Silent_p.F2795F	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2834					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						ACTATCAGTTCCATACAACAT	0.328													6	29					0	0	1	0	0
GNA14	9630	broad.mit.edu	37	9	80144023	80144023	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:80144023C>T	uc004aku.2	-	2	794	c.271G>A	c.(271-273)GAC>AAC	p.D91N		NM_004297	NP_004288	O95837	GNA14_HUMAN	G alpha 14	91					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(2)	2						CTTAGCGTGTCCATCGCTCTG	0.478													39	185					0	0	1	0	0
PSAT1	29968	broad.mit.edu	37	9	80943007	80943007	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:80943007C>T	uc004ala.2	+	8	978	c.910C>T	c.(910-912)CCA>TCA	p.P304S	PSAT1_uc004alb.2_Intron	NM_058179	NP_478059	Q9Y617	SERC_HUMAN	phosphoserine aminotransferase 1 isoform 1	304					L-serine biosynthetic process|pyridoxine biosynthetic process		O-phospho-L-serine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)	GATGAATATTCCATTCCGCAT	0.368													12	39					0	0	1	0	0
TLE4	7091	broad.mit.edu	37	9	82319705	82319705	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:82319705C>T	uc004ald.2	+	9	1445	c.596C>T	c.(595-597)TCA>TTA	p.S199L	TLE4_uc004alc.2_Missense_Mutation_p.S206L|TLE4_uc010mpr.2_Missense_Mutation_p.S85L|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Missense_Mutation_p.S174L|TLE4_uc010mps.2_Missense_Mutation_p.S199L|TLE4_uc004alf.2_Missense_Mutation_p.S145L	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						CAGAGCTCTTCAGTATCCCCA	0.403													72	166					0	0	1	0	0
TLE4	7091	broad.mit.edu	37	9	82321756	82321756	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:82321756C>T	uc004ald.2	+	11	1706	c.857C>T	c.(856-858)CCA>CTA	p.P286L	TLE4_uc004alc.2_Missense_Mutation_p.P293L|TLE4_uc010mpr.2_Missense_Mutation_p.P172L|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Missense_Mutation_p.P261L|TLE4_uc010mps.2_Intron|TLE4_uc004alf.2_Missense_Mutation_p.P232L	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						CCGATTAGTCCAGCCTCTATT	0.527													65	158					0	0	1	0	0
TLE4	7091	broad.mit.edu	37	9	82323694	82323694	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:82323694C>T	uc004ald.2	+	14	2180	c.1331C>T	c.(1330-1332)TCA>TTA	p.S444L	TLE4_uc004alc.2_Missense_Mutation_p.S419L|TLE4_uc010mpr.2_Missense_Mutation_p.S298L|TLE4_uc004ale.2_Missense_Mutation_p.S56L|TLE4_uc011lsq.1_Missense_Mutation_p.S387L|TLE4_uc010mps.2_Missense_Mutation_p.S343L|TLE4_uc004alf.2_Missense_Mutation_p.S358L	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						TATGGGAGATCACCAGTGGTG	0.368													9	25					0	0	1	0	0
FLJ43950	347127	broad.mit.edu	37	9	84530438	84530438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:84530438C>T	uc011lst.1	+	4	460	c.359C>T	c.(358-360)TCT>TTT	p.S120F		NR_026851				SubName: Full=cDNA FLJ43950 fis, clone TESTI4015293, moderately similar to FAM75-like protein;												0						CGACTGCTGTCTTGGGAGTCC	0.532													4	41					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84605985	84605985	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:84605985C>T	uc004amn.2	+	4	647	c.600C>T	c.(598-600)CTC>CTT	p.L200L		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	200	Pro-rich.					integral to membrane					0						CCTTAATTCTCTCACCTGACC	0.552													44	75					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84606558	84606558	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:84606558G>A	uc004amn.2	+	4	1220	c.1173G>A	c.(1171-1173)GGG>GGA	p.G391G		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	391						integral to membrane					0						CCTTTTTAGGGGGGCACTCTG	0.473													16	49					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607827	84607827	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:84607827G>A	uc004amn.2	+	4	2489	c.2442G>A	c.(2440-2442)GGG>GGA	p.G814G		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	814						integral to membrane					0						ATCTGTCAGGGAATGACTCAG	0.453													24	42					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609301	84609301	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:84609301G>A	uc004amn.2	+	4	3963	c.3916G>A	c.(3916-3918)GGA>AGA	p.G1306R		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1306						integral to membrane					0						AGAGCTTGATGGAGGGGATGC	0.532													6	27					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609371	84609371	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:84609371G>A	uc004amn.2	+	4	4033	c.3986G>A	c.(3985-3987)GGG>GAG	p.G1329E		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1329						integral to membrane					0						AAGACATCAGGGGAGGTGCTT	0.507													4	23					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609614	84609614	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:84609614G>A	uc004amn.2	+	4	4276	c.4229G>A	c.(4228-4230)AGG>AAG	p.R1410K		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1410						integral to membrane					0						AAAGACACTAGGGAGTTCCTA	0.498													7	17					0	0	1	0	0
RASEF	158158	broad.mit.edu	37	9	85622405	85622405	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:85622405G>A	uc004amo.1	-	7	1236	c.975C>T	c.(973-975)ATC>ATT	p.I325I		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	325	Potential.				protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						TGTATGCTCGGATTATTTCCA	0.398													47	69					0	0	1	0	0
FRMD3	257019	broad.mit.edu	37	9	85863064	85863064	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:85863064C>T	uc004ams.1	-	14	1765	c.1563G>A	c.(1561-1563)GTG>GTA	p.V521V	FRMD3_uc004amr.1_Silent_p.V507V|FRMD3_uc004amq.1_Silent_p.V178V	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	521						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						CCAGTGGGTTCACCCGAATAT	0.517													26	58					0	0	1	0	0
FRMD3	257019	broad.mit.edu	37	9	85926837	85926837	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:85926837G>A	uc004ams.1	-	8	940	c.738C>T	c.(736-738)GTC>GTT	p.V246V	FRMD3_uc004amr.1_Silent_p.V232V	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	246	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						TTCCCTGAAAGACCACAAAGC	0.343													21	61					0	0	1	0	0
KIF27	55582	broad.mit.edu	37	9	86468627	86468627	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:86468627G>A	uc004ana.2	-	15	3418	c.3274C>T	c.(3274-3276)CGT>TGT	p.R1092C	KIF27_uc010mpw.2_Missense_Mutation_p.R1026C|KIF27_uc010mpx.2_Missense_Mutation_p.R995C	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	1092					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						GCTTCACCACGAGAGAGGTTA	0.398													37	90					0	0	1	0	0
KIF27	55582	broad.mit.edu	37	9	86518066	86518066	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:86518066G>A	uc004ana.2	-	4	1511	c.1367C>T	c.(1366-1368)TCA>TTA	p.S456L	KIF27_uc010mpw.2_Missense_Mutation_p.S456L|KIF27_uc010mpx.2_Missense_Mutation_p.S456L	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	456					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						TCCTCGAAATGAGGTGAGGAC	0.463													19	65					0	0	1	0	0
KIF27	55582	broad.mit.edu	37	9	86518880	86518880	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:86518880G>A	uc004ana.2	-	4	697	c.553C>T	c.(553-555)CTT>TTT	p.L185F	KIF27_uc010mpw.2_Missense_Mutation_p.L185F|KIF27_uc010mpx.2_Missense_Mutation_p.L185F	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	185	Kinesin-motor.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						ATCTCCAAAAGACTCATCACT	0.408													99	185					0	0	1	0	0
KIF27	55582	broad.mit.edu	37	9	86523440	86523440	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:86523440G>A	uc004ana.2	-	3	570	c.426C>T	c.(424-426)GAC>GAT	p.D142D	KIF27_uc010mpw.2_Silent_p.D142D|KIF27_uc010mpx.2_Silent_p.D142D	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	142	Kinesin-motor.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						GATCTCTTAGGTCTTCCTTGT	0.363													32	112					0	0	1	0	0
RMI1	80010	broad.mit.edu	37	9	86617114	86617114	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:86617114C>T	uc004anq.3	+	3	1621	c.1213C>T	c.(1213-1215)CAT>TAT	p.H405Y	RMI1_uc004anr.3_Missense_Mutation_p.H405Y|RMI1_uc004anp.3_Missense_Mutation_p.H405Y|RMI1_uc004ans.3_Missense_Mutation_p.H405Y	NM_024945	NP_079221	Q9H9A7	RMI1_HUMAN	RMI1, RecQ mediated genome instability 1,	405					DNA replication	nucleus					0						TTTTTCAGTTCATTGTAATGT	0.313													45	67					0	0	1	0	0
SLC28A3	64078	broad.mit.edu	37	9	86894926	86894926	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:86894926C>T	uc010mpz.2	-	16	1917	c.1792G>A	c.(1792-1794)GGG>AGG	p.G598R	SLC28A3_uc011lsy.1_Missense_Mutation_p.G529R|SLC28A3_uc004anu.1_Missense_Mutation_p.G598R	NM_022127	NP_071410	Q9HAS3	S28A3_HUMAN	concentrative Na+-nucleoside cotransporter	598	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|plasma membrane	nucleoside binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						GCCACGGTCCCCGCAATCAGA	0.572													6	28					0	0	1	0	0
NTRK2	4915	broad.mit.edu	37	9	87285691	87285691	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:87285691C>A	uc004aoa.1	+	4	966	c.28C>A	c.(28-30)CCC>ACC	p.P10T	NTRK2_uc004anv.1_Missense_Mutation_p.P10T|NTRK2_uc004any.1_Missense_Mutation_p.P10T|NTRK2_uc004anz.1_Missense_Mutation_p.P10T|NTRK2_uc011lsz.1_Missense_Mutation_p.P10T|NTRK2_uc011lta.1_Missense_Mutation_p.P10T|NTRK2_uc004aob.1_Missense_Mutation_p.P10T|NTRK2_uc011ltb.1_5'Flank	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	10					activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						GTGGCATGGACCCGCCATGGC	0.677										TSP Lung(25;0.17)			20	118					2.27731e-05	2.28064e-05	1	1	0
NTRK2	4915	broad.mit.edu	37	9	87482336	87482336	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:87482336G>A	uc004aoa.1	+	15	2513	c.1575G>A	c.(1573-1575)AAG>AAA	p.K525K	NTRK2_uc004any.1_Silent_p.K525K|NTRK2_uc004anz.1_Silent_p.K541K|NTRK2_uc011lsz.1_Silent_p.K541K|NTRK2_uc011lta.1_Silent_p.K525K|NTRK2_uc004aoc.2_Silent_p.K76K	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	525	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						GTCAGCTCAAGCCAGACACAT	0.463										TSP Lung(25;0.17)			41	157					0	0	1	0	0
NTRK2	4915	broad.mit.edu	37	9	87636167	87636167	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:87636167G>A	uc004aoa.1	+	20	3222	c.2284G>A	c.(2284-2286)GTG>ATG	p.V762M	NTRK2_uc004anz.1_Missense_Mutation_p.V778M	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	762	Protein kinase.|Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						CTCCATCCAGGTGATAGAGTG	0.527										TSP Lung(25;0.17)			4	21					0	0	1	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88201751	88201751	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:88201751G>A	uc011ltd.1	-	21	3061	c.3028C>T	c.(3028-3030)CCC>TCC	p.P1010S	AGTPBP1_uc004aod.3_Missense_Mutation_p.P636S|AGTPBP1_uc011ltc.1_Intron|AGTPBP1_uc010mqc.2_Missense_Mutation_p.P970S|AGTPBP1_uc011lte.1_Missense_Mutation_p.P1022S	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	1010					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						CTTACCAAGGGTAAACGCTTC	0.373													21	85					0	0	1	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88284438	88284438	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:88284438G>A	uc011ltd.1	-	7	657	c.624C>T	c.(622-624)ATC>ATT	p.I208I	AGTPBP1_uc011ltc.1_Silent_p.I106I|AGTPBP1_uc010mqc.2_Silent_p.I208I|AGTPBP1_uc011lte.1_Silent_p.I260I	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	208					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						ATGGTCCAATGATTTTAAACA	0.303													8	90					0	0	1	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88284477	88284477	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:88284477G>A	uc011ltd.1	-	7	618	c.585C>T	c.(583-585)TCC>TCT	p.S195S	AGTPBP1_uc011ltc.1_Silent_p.S93S|AGTPBP1_uc010mqc.2_Silent_p.S195S|AGTPBP1_uc011lte.1_Silent_p.S247S	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	195					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						TTTTCCCTAAGGATACTGAAT	0.328													9	85					0	0	1	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88307707	88307707	+	Silent	SNP	G	A	A	rs142829279		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:88307707G>A	uc011ltd.1	-	2	87	c.54C>T	c.(52-54)ATC>ATT	p.I18I	AGTPBP1_uc010mqc.2_Silent_p.I18I|AGTPBP1_uc011lte.1_Silent_p.I70I	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	18					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						GGAGTCCTACGATCCTAGAAT	0.383													16	63					0	0	1	0	0
NAA35	60560	broad.mit.edu	37	9	88611379	88611379	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:88611379C>T	uc004aoi.3	+	12	1080	c.943C>T	c.(943-945)CGA>TGA	p.R315*	NAA35_uc004aoj.3_Nonsense_Mutation_p.R315*	NM_024635	NP_078911	Q5VZE5	NAA35_HUMAN	corneal wound healing-related protein	315					smooth muscle cell proliferation	cytoplasm|nucleus|plasma membrane				skin(2)|central_nervous_system(1)	3						TACCTTCCCTCGATATGCAAA	0.313													9	67					0	0	1	0	0
DAPK1	1612	broad.mit.edu	37	9	90254384	90254384	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90254384C>T	uc004apc.2	+	5	677	c.539C>T	c.(538-540)ACT>ATT	p.T180I	DAPK1_uc004ape.2_Missense_Mutation_p.T180I|DAPK1_uc004apd.2_Missense_Mutation_p.T180I|DAPK1_uc011ltg.1_Missense_Mutation_p.T180I|DAPK1_uc011lth.1_5'UTR	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	180	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						ATATTTGGGACTCCAGAGTTT	0.398									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				26	101					0	0	1	0	0
DAPK1	1612	broad.mit.edu	37	9	90321118	90321118	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90321118C>T	uc004apc.2	+	26	3270	c.3132C>T	c.(3130-3132)GTC>GTT	p.V1044V	DAPK1_uc004apd.2_Silent_p.V1044V|DAPK1_uc011ltg.1_Silent_p.V978V|DAPK1_uc011lth.1_Silent_p.V781V|DAPK1_uc004apg.2_Silent_p.V21V	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	1044					apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						GCACAAACGTCCTGGGGAAGT	0.627									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				10	40					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90459512	90459512	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90459512G>A	uc004apn.1	+	2		c.95G>A								Human cathepsin-L-like (CTSLL3) mRNA.																		AAGGATGGAGGAGAGCAGTGT	0.428													5	61					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90498113	90498113	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90498113G>A	uc004app.3	+	1	342	c.307G>A	c.(307-309)GAG>AAG	p.E103K	C9orf79_uc004apo.1_Intron	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	103						integral to membrane				ovary(3)	3						GAGCAGCAGGGAGGTAAGGAG	0.557													4	7					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90500456	90500456	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90500456G>A	uc004app.3	+	4	1089	c.1054G>A	c.(1054-1056)GGT>AGT	p.G352S	C9orf79_uc004apo.1_Missense_Mutation_p.G164S	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	352						integral to membrane				ovary(3)	3						CATGGAGGTAGGTGGCTGCAC	0.562													23	39					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90500477	90500477	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90500477C>T	uc004app.3	+	4	1110	c.1075C>T	c.(1075-1077)CCT>TCT	p.P359S	C9orf79_uc004apo.1_Missense_Mutation_p.P171S	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	359						integral to membrane				ovary(3)	3						ATTCATCCACCCTGACGTGCA	0.582													6	67					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90500527	90500527	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90500527G>A	uc004app.3	+	4	1160	c.1125G>A	c.(1123-1125)ATG>ATA	p.M375I	C9orf79_uc004apo.1_Missense_Mutation_p.M187I	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	375						integral to membrane				ovary(3)	3						GAGCACTGATGAAGATGTGGC	0.562													40	55					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90500731	90500731	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90500731C>T	uc004app.3	+	4	1364	c.1329C>T	c.(1327-1329)CTC>CTT	p.L443L	C9orf79_uc004apo.1_Silent_p.L255L	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	443						integral to membrane				ovary(3)	3						TCTGGGACCTCCCCTCTCTCA	0.562													23	182					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90501062	90501062	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90501062G>A	uc004app.3	+	4	1695	c.1660G>A	c.(1660-1662)GAG>AAG	p.E554K	C9orf79_uc004apo.1_Missense_Mutation_p.E366K	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	554						integral to membrane				ovary(3)	3						TACATCCCAGGAGAGGACACA	0.438													52	127					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90501704	90501704	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90501704C>T	uc004app.3	+	4	2337	c.2302C>T	c.(2302-2304)CAT>TAT	p.H768Y	C9orf79_uc004apo.1_Missense_Mutation_p.H580Y	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	768						integral to membrane				ovary(3)	3						GCTGCAAATCCATCTGGCCAG	0.552													18	56					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90501772	90501772	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90501772C>T	uc004app.3	+	4	2405	c.2370C>T	c.(2368-2370)CTC>CTT	p.L790L	C9orf79_uc004apo.1_Silent_p.L602L	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	790						integral to membrane				ovary(3)	3						GCTCCTGGCTCATGGCCAAAT	0.577													6	65					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90501775	90501775	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90501775G>A	uc004app.3	+	4	2408	c.2373G>A	c.(2371-2373)ATG>ATA	p.M791I	C9orf79_uc004apo.1_Missense_Mutation_p.M603I	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	791						integral to membrane				ovary(3)	3						CCTGGCTCATGGCCAAATGTG	0.572													12	57					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90502084	90502084	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90502084C>T	uc004app.3	+	4	2717	c.2682C>T	c.(2680-2682)TTC>TTT	p.F894F	C9orf79_uc004apo.1_Silent_p.F706F	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	894						integral to membrane				ovary(3)	3						TTCCCATTTTCCTGGGAAAAC	0.597													6	33					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90502112	90502112	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90502112G>A	uc004app.3	+	4	2745	c.2710G>A	c.(2710-2712)GGA>AGA	p.G904R	C9orf79_uc004apo.1_Missense_Mutation_p.G716R	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	904						integral to membrane				ovary(3)	3						GAATGGTCCAGGAGACAACAG	0.597													10	60					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90502394	90502394	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90502394G>A	uc004app.3	+	4	3027	c.2992G>A	c.(2992-2994)GAG>AAG	p.E998K		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	998						integral to membrane				ovary(3)	3						GGCTGGGAACGAGGCATGGCT	0.582													10	52					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90502575	90502575	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90502575G>A	uc004app.3	+	4	3208	c.3173G>A	c.(3172-3174)GGA>GAA	p.G1058E		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1058						integral to membrane				ovary(3)	3						GCAAGTTCGGGAAGTGTTCAG	0.597													16	88					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90502893	90502893	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90502893C>T	uc004app.3	+	4	3526	c.3491C>T	c.(3490-3492)TCC>TTC	p.S1164F		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1164						integral to membrane				ovary(3)	3						ATGACAGCTTCCCAGGGGCCA	0.617													15	23					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90503026	90503026	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90503026G>A	uc004app.3	+	4	3659	c.3624G>A	c.(3622-3624)AGG>AGA	p.R1208R		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1208						integral to membrane				ovary(3)	3						AGGCCCACAGGAGGCCCAGAA	0.642													6	10					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90503081	90503081	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90503081G>A	uc004app.3	+	4	3714	c.3679G>A	c.(3679-3681)GCC>ACC	p.A1227T		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1227						integral to membrane				ovary(3)	3						GACCTCTGAAGCCAGTGGGAG	0.597													4	26					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90503636	90503636	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90503636C>T	uc004app.3	+	4	4269	c.4234C>T	c.(4234-4236)CCA>TCA	p.P1412S		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1412						integral to membrane				ovary(3)	3						GCCTGTGTCCCCAGCTGGTCC	0.627													18	38					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535853	90535853	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90535853C>T	uc010mqi.2	+	4	1060	c.1031C>T	c.(1030-1032)TCA>TTA	p.S344L	FAM75C1_uc004apq.3_Missense_Mutation_p.S327L	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CCCTTTATTTCATCCACACCC	0.567													68	251					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536242	90536242	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90536242G>A	uc010mqi.2	+	4	1449	c.1420G>A	c.(1420-1422)GAT>AAT	p.D474N	FAM75C1_uc004apq.3_Missense_Mutation_p.D457N	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						AGAGTCTCTGGATCTGATGCA	0.537													17	62					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536496	90536496	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90536496G>A	uc010mqi.2	+	4	1703	c.1674G>A	c.(1672-1674)AGG>AGA	p.R558R	FAM75C1_uc004apq.3_Silent_p.R541R	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						GGAACCTGAGGAAGCCCTTGA	0.502													33	117					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90537132	90537132	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90537132G>A	uc010mqi.2	+	4	2339	c.2310G>A	c.(2308-2310)CAG>CAA	p.Q770Q	FAM75C1_uc004apq.3_Silent_p.Q753Q	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CAGCTGGACAGGAGGGCAGGT	0.577													5	59					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90537175	90537175	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90537175G>A	uc010mqi.2	+	4	2382	c.2353G>A	c.(2353-2355)GGC>AGC	p.G785S	FAM75C1_uc004apq.3_Missense_Mutation_p.G768S	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CAGCCTCAAAGGCAGCACCCA	0.577													14	96					0	0	1	0	0
CDK20	23552	broad.mit.edu	37	9	90584785	90584785	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90584785G>A	uc004apr.2	-	6	919	c.613C>T	c.(613-615)CCG>TCG	p.P205S	CDK20_uc004aps.2_Missense_Mutation_p.P184S|CDK20_uc004apt.2_Missense_Mutation_p.P197S|CDK20_uc004apu.2_Intron	NM_001039803	NP_001034892	Q8IZL9	CDK20_HUMAN	cell cycle related kinase isoform 3	205	Protein kinase.				cell division|multicellular organismal development	cilium|mitochondrion|nucleus	ATP binding|cyclin-dependent protein kinase activity			skin(1)	1						TTCTTGCCCGGGAAAAGGGGG	0.577													7	73					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90744579	90744579	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90744579G>A	uc011lti.1	-	4	3402	c.3373C>T	c.(3373-3375)CCC>TCC	p.P1125S	uc004apx.1_5'Flank					SubName: Full=cDNA FLJ59639;																		TCTCTGTTGGGACGACTCTGG	0.522													38	120					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90746571	90746571	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90746571C>T	uc011lti.1	-	4	1410	c.1381G>A	c.(1381-1383)GGA>AGA	p.G461R						SubName: Full=cDNA FLJ59639;																		TGGATCCTTCCACGTTGCCCC	0.542													25	140					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90746970	90746970	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90746970G>A	uc011lti.1	-	4	1011	c.982C>T	c.(982-984)CAT>TAT	p.H328Y						SubName: Full=cDNA FLJ59639;																		GGCTCCAGATGGGACAGGGGC	0.552													25	276					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90747245	90747245	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:90747245C>T	uc011lti.1	-	4	736	c.707G>A	c.(706-708)CGG>CAG	p.R236Q						SubName: Full=cDNA FLJ59639;																		AGTGGAGTCCCGCAGGGGAGG	0.592													43	121					0	0	1	0	0
LOC286238	286238	broad.mit.edu	37	9	91262450	91262450	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91262450G>A	uc010mql.1	-	2	326	c.193C>T	c.(193-195)CAT>TAT	p.H65Y		NM_001100111	NP_001093581			hypothetical protein LOC286238												0						TATACATAATGAGTTATCATC	0.433													34	101					0	0	1	0	0
C9orf47	286223	broad.mit.edu	37	9	91606031	91606031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91606031C>T	uc004aqd.2	+	1	254	c.121C>T	c.(121-123)CCA>TCA	p.P41S	S1PR3_uc004aqe.2_5'Flank|C9orf47_uc004aqc.1_Missense_Mutation_p.P41S	NM_001001938	NP_001001938	Q6ZRZ4	CI047_HUMAN	hypothetical protein LOC286223 isoform 1	41						extracellular region					0						GGACCTGGTTCCAAGCCTGTT	0.612													13	22					0	0	1	0	0
S1PR3	1903	broad.mit.edu	37	9	91616823	91616823	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91616823G>A	uc004aqe.2	+	2	1104	c.708G>A	c.(706-708)GAG>GAA	p.E236E		NM_005226	NP_005217	Q99500	S1PR3_HUMAN	sphingosine-1-phosphate receptor 3	236	Cytoplasmic (By similarity).				anatomical structure morphogenesis|elevation of cytosolic calcium ion concentration|inflammatory response|positive regulation of cell proliferation	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)|central_nervous_system(1)|skin(1)	5						ACAACTCGGAGCGGTCCATGG	0.577													14	51					0	0	1	0	0
S1PR3	1903	broad.mit.edu	37	9	91616901	91616901	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91616901C>T	uc004aqe.2	+	2	1182	c.786C>T	c.(784-786)CTC>CTT	p.L262L		NM_005226	NP_005217	Q99500	S1PR3_HUMAN	sphingosine-1-phosphate receptor 3	262	Helical; Name=6; (By similarity).				anatomical structure morphogenesis|elevation of cytosolic calcium ion concentration|inflammatory response|positive regulation of cell proliferation	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)|central_nervous_system(1)|skin(1)	5						TCTTCATCCTCTTCCTCATTG	0.597													22	29					0	0	1	0	0
S1PR3	1903	broad.mit.edu	37	9	91617111	91617111	+	Silent	SNP	C	T	T	rs138808274		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91617111C>T	uc004aqe.2	+	2	1392	c.996C>T	c.(994-996)CTC>CTT	p.L332L		NM_005226	NP_005217	Q99500	S1PR3_HUMAN	sphingosine-1-phosphate receptor 3	332	Cytoplasmic (By similarity).				anatomical structure morphogenesis|elevation of cytosolic calcium ion concentration|inflammatory response|positive regulation of cell proliferation	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)|central_nervous_system(1)|skin(1)	5						AGCCTGCGCTCGACCCAAGCA	0.632													12	44					0	0	1	0	0
SHC3	53358	broad.mit.edu	37	9	91628487	91628487	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91628487G>A	uc004aqg.2	-	12	1967	c.1660C>T	c.(1660-1662)CGG>TGG	p.R554W		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	554	SH2.			R -> Q (in Ref. 4; AAH26314).	central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						TCCTTTGTCCGGATCTATGAA	0.488													5	82					0	0	1	0	0
SHC3	53358	broad.mit.edu	37	9	91657096	91657096	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91657096G>A	uc004aqg.2	-	10	1512	c.1205C>T	c.(1204-1206)TCC>TTC	p.S402F		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	402	CH1.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						GATGTCCGAGGACCCTGCAAC	0.547													26	114					0	0	1	0	0
SHC3	53358	broad.mit.edu	37	9	91692774	91692774	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91692774C>T	uc004aqg.2	-	3	897	c.590G>A	c.(589-591)GGA>GAA	p.G197E		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	197	PID.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						CTTGAAGGCTCCCTTCGCACC	0.483													27	80					0	0	1	0	0
SEMA4D	10507	broad.mit.edu	37	9	91994072	91994072	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91994072G>A	uc004aqo.1	-	18	2708	c.2136C>T	c.(2134-2136)ATC>ATT	p.I712I	SEMA4D_uc011ltm.1_Intron|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Silent_p.I710I	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	712	Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						TGTTGATGACGATCTTTGGTT	0.512													8	60					0	0	1	0	0
SEMA4D	10507	broad.mit.edu	37	9	91996156	91996156	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:91996156G>A	uc004aqo.1	-	16	2124	c.1552C>T	c.(1552-1554)CCC>TCC	p.P518S	SEMA4D_uc011ltm.1_Missense_Mutation_p.P518S|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Missense_Mutation_p.P516S	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	518	PSI.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						GCGCAGTAGGGGTCCCGCGCC	0.687													10	13					0	0	1	0	0
SEMA4D	10507	broad.mit.edu	37	9	92006331	92006331	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:92006331C>T	uc004aqo.1	-	11	1195	c.623_splice	c.e11-1	p.E208_splice	SEMA4D_uc011ltm.1_Splice_Site_p.E208_splice|SEMA4D_uc011ltn.1_Splice_Site|SEMA4D_uc011lto.1_Splice_Site|SEMA4D_uc004aqp.1_Splice_Site_p.E206_splice	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1						anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						AAACTAGGCTCTGCAGAGAGA	0.582													13	57					0	0	1	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375806	93375806	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:93375806C>T	uc004aqx.1	-	2	415	c.304G>A	c.(304-306)GAA>AAA	p.E102K		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	102					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						CAGATTTGTTCGTAGATGGGC	0.592													10	106					0	0	1	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375997	93375997	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:93375997G>A	uc004aqx.1	-	2	224	c.113C>T	c.(112-114)CCG>CTG	p.P38L		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	38	Effector region (Potential).|GTP.				small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						TTCCACCGTCGGGATGTAGCT	0.577													28	161					0	0	1	0	0
SYK	6850	broad.mit.edu	37	9	93624558	93624558	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:93624558C>T	uc004aqz.2	+	4	854	c.649C>T	c.(649-651)CGC>TGC	p.R217C	SYK_uc004aqy.2_Missense_Mutation_p.R217C|SYK_uc004ara.2_Missense_Mutation_p.R217C|SYK_uc004arb.2_Missense_Mutation_p.R217C|SYK_uc004arc.2_Missense_Mutation_p.R217C|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	217	SH2 2.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						GCTGCACTATCGCATCGACAA	0.577			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								6	28					0	0	1	0	0
SYK	6850	broad.mit.edu	37	9	93629424	93629424	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:93629424G>A	uc004aqz.2	+	7	1063	c.858G>A	c.(856-858)GCG>GCA	p.A286A	SYK_uc004aqy.2_Silent_p.A286A|SYK_uc004ara.2_Intron|SYK_uc004arb.2_Intron|SYK_uc004arc.2_Silent_p.A286A|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	286	Linker.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CTTGGTCAGCGGGTGGAATAA	0.443			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								25	76					0	0	1	0	0
SYK	6850	broad.mit.edu	37	9	93637034	93637034	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:93637034G>A	uc004aqz.2	+	9	1289	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	SYK_uc004ara.2_Missense_Mutation_p.E339K|SYK_uc004arb.2_Missense_Mutation_p.E339K|SYK_uc004arc.2_Missense_Mutation_p.E362K|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	362	Linker.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CAGGCCCAAGGAGGTTTACCT	0.527			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								45	210					0	0	1	0	0
ROR2	4920	broad.mit.edu	37	9	94486955	94486955	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:94486955G>A	uc004arj.1	-	9	2020	c.1821C>T	c.(1819-1821)TCC>TCT	p.S607S	ROR2_uc004ari.1_Silent_p.S467S	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	607	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						CGTGGTGGCTGGATAGGTACT	0.607													23	51					0	0	1	0	0
ROR2	4920	broad.mit.edu	37	9	94487106	94487106	+	Missense_Mutation	SNP	G	A	A	rs56099091	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:94487106G>A	uc004arj.1	-	9	1869	c.1670C>T	c.(1669-1671)TCG>TTG	p.S557L	ROR2_uc004ari.1_Missense_Mutation_p.S417L	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	557	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GTCGCCGTGCGAACAGTAGCT	0.652													9	47					0	0	1	0	0
ROR2	4920	broad.mit.edu	37	9	94488981	94488981	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:94488981G>A	uc004arj.1	-	8	1427	c.1228C>T	c.(1228-1230)CCC>TCC	p.P410S	ROR2_uc004ari.1_Missense_Mutation_p.P270S|ROR2_uc004ark.2_Silent_p.S398S	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	410	Helical; (Potential).				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GCGATGCTGGGGACCAAGATG	0.498													29	50					0	0	1	0	0
ROR2	4920	broad.mit.edu	37	9	94519661	94519661	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:94519661C>T	uc004arj.1	-	3	555	c.356G>A	c.(355-357)CGA>CAA	p.R119Q	ROR2_uc004ari.1_5'UTR|ROR2_uc004ark.2_Missense_Mutation_p.R119Q	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	119	Extracellular (Potential).|Ig-like C2-type.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GATTCGCAGTCGTGAACCATA	0.587													39	136					0	0	1	0	0
ROR2	4920	broad.mit.edu	37	9	94519722	94519722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:94519722C>T	uc004arj.1	-	3	494	c.295G>A	c.(295-297)GAT>AAT	p.D99N	ROR2_uc004ari.1_5'UTR|ROR2_uc004ark.2_Missense_Mutation_p.D99N	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	99	Extracellular (Potential).|Ig-like C2-type.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						ACCGGGGCATCATTCTTTAGC	0.562													35	105					0	0	1	0	0
SPTLC1	10558	broad.mit.edu	37	9	94809925	94809925	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:94809925G>A	uc004arl.1	-	10	992	c.954C>T	c.(952-954)TGC>TGT	p.C318C	SPTLC1_uc011ltv.1_Silent_p.C318C	NM_006415	NP_006406	O15269	SPTC1_HUMAN	serine palmitoyltransferase subunit 1 isoform a	318	Cytoplasmic (Potential).					integral to membrane|SPOTS complex	protein binding|pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			ovary(1)|breast(1)	2					L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	ACCTGCCACAGCAGAAACCTC	0.393													7	32					0	0	1	0	0
OGN	4969	broad.mit.edu	37	9	95148533	95148533	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95148533C>T	uc004asa.2	-	6	911	c.676G>A	c.(676-678)GAA>AAA	p.E226K	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|OGN_uc004asb.2_Missense_Mutation_p.E226K|OGN_uc011ltx.1_Missense_Mutation_p.E244K	NM_014057	NP_054776	P20774	MIME_HUMAN	osteoglycin preproprotein	226	LRR 6.					extracellular space|proteinaceous extracellular matrix	growth factor activity				0						GGCACGGATTCCAGGGCATTA	0.378													25	75					0	0	1	0	0
ECM2	1842	broad.mit.edu	37	9	95263154	95263154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95263154C>T	uc004ash.2	-	9	1851	c.1786G>A	c.(1786-1788)GAT>AAT	p.D596N	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Missense_Mutation_p.D574N|ECM2_uc011lty.1_Missense_Mutation_p.D596N|ECM2_uc004asg.2_Missense_Mutation_p.D574N|ECM2_uc010mqz.1_Missense_Mutation_p.D18N	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	596	LRR 10.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						TCCATGCCATCATCAGCAAGT	0.443													25	94					0	0	1	0	0
ECM2	1842	broad.mit.edu	37	9	95263230	95263230	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95263230C>T	uc004ash.2	-	9	1775	c.1710G>A	c.(1708-1710)CGG>CGA	p.R570R	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Silent_p.R548R|ECM2_uc011lty.1_Silent_p.R570R|ECM2_uc004asg.2_Silent_p.R548R|ECM2_uc010mqz.1_5'UTR	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	570	LRR 9.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						AGCCAGGGATCCGTTCAATCT	0.483													20	74					0	0	1	0	0
ECM2	1842	broad.mit.edu	37	9	95274346	95274346	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95274346C>T	uc004ash.2	-	5	1182	c.1117G>A	c.(1117-1119)GAT>AAT	p.D373N	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Missense_Mutation_p.D351N|ECM2_uc011lty.1_Missense_Mutation_p.D373N|ECM2_uc004asg.2_Missense_Mutation_p.D351N	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	373	LRR 1.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						TTACTCAGATCAAGCCTTTCC	0.393													25	59					0	0	1	0	0
IPPK	64768	broad.mit.edu	37	9	95410411	95410411	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95410411G>A	uc004asl.1	-	6	711	c.434C>T	c.(433-435)CCT>CTT	p.P145L		NM_022755	NP_073592	Q9H8X2	IPPK_HUMAN	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	145					inositol or phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol pentakisphosphate 2-kinase activity			ovary(2)	2						ACTCGAGAAAGGAATAAACCC	0.413													4	31					0	0	1	0	0
BICD2	23299	broad.mit.edu	37	9	95480899	95480899	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95480899G>A	uc004aso.1	-	5	2085	c.2028C>T	c.(2026-2028)ATC>ATT	p.I676I	BICD2_uc004asp.1_Silent_p.I676I	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	676	Interacts with RAB6A (By similarity).|Potential.				microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						TCAGCTTGAGGATCTCCTCCA	0.642													22	183					0	0	1	0	0
ZNF484	83744	broad.mit.edu	37	9	95608714	95608714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95608714G>A	uc004asu.1	-	5	2504	c.2355C>T	c.(2353-2355)TTC>TTT	p.F785F	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Silent_p.F787F|ZNF484_uc010mrb.1_Silent_p.F749F|ZNF484_uc004asv.1_Silent_p.F749F	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	785	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATCTGATGGTGAAGGCCTTTC	0.398													69	141					0	0	1	0	0
ZNF484	83744	broad.mit.edu	37	9	95610021	95610021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95610021G>A	uc004asu.1	-	5	1197	c.1048C>T	c.(1048-1050)CAT>TAT	p.H350Y	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.H352Y|ZNF484_uc010mrb.1_Missense_Mutation_p.H314Y|ZNF484_uc004asv.1_Missense_Mutation_p.H314Y	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	350	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCCAGAATGAATTCTCTGG	0.368													15	42					0	0	1	0	0
ANKRD19	138649	broad.mit.edu	37	9	95646896	95646896	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95646896C>T	uc004asr.3	+	10		c.2024C>T								Homo sapiens cDNA FLJ36178 fis, clone TESTI2026534.												0						GACCTGCTTTCACAACTGCAG	0.607													44	125					0	0	1	0	0
SUSD3	203328	broad.mit.edu	37	9	95847007	95847007	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:95847007C>T	uc004atb.2	+	5	782	c.746C>T	c.(745-747)CCC>CTC	p.P249L	SUSD3_uc004atc.2_Missense_Mutation_p.P236L	NM_145006	NP_659443	Q96L08	SUSD3_HUMAN	sushi domain containing 3	249	Cytoplasmic (Potential).					integral to membrane				breast(2)|skin(2)|ovary(1)|lung(1)	6						CCACAACAGCCCGCAGCATAT	0.647													26	80					0	0	1	0	0
WNK2	65268	broad.mit.edu	37	9	96021270	96021270	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96021270C>T	uc004ati.1	+	11	2440	c.2440C>T	c.(2440-2442)CCT>TCT	p.P814S	WNK2_uc011lud.1_Missense_Mutation_p.P814S|WNK2_uc004atj.2_Missense_Mutation_p.P814S|WNK2_uc004atk.2_Missense_Mutation_p.P451S|WNK2_uc010mrc.1_Missense_Mutation_p.P762S	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	814					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CGACGGCCTCCCTCCGGCCCT	0.657													21	60					0	0	1	0	0
WNK2	65268	broad.mit.edu	37	9	96024216	96024216	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96024216C>T	uc004ati.1	+	12	3187	c.3187C>T	c.(3187-3189)CCT>TCT	p.P1063S	WNK2_uc011lud.1_Missense_Mutation_p.P1063S|WNK2_uc004atj.2_Missense_Mutation_p.P1063S|WNK2_uc004atk.2_Missense_Mutation_p.P700S	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1063					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						GCCTGCCGCCCCTGAGCTCCT	0.682													6	23					0	0	1	0	0
WNK2	65268	broad.mit.edu	37	9	96025959	96025959	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96025959C>T	uc004ati.1	+	14	3522	c.3522C>T	c.(3520-3522)TCC>TCT	p.S1174S	WNK2_uc011lud.1_Silent_p.S1174S|WNK2_uc004atj.2_Silent_p.S1174S|WNK2_uc004atk.2_Silent_p.S811S	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1174					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						ACCGCAGGTCCACGCGTGCGC	0.577													3	9					0	0	1	0	0
WNK2	65268	broad.mit.edu	37	9	96030073	96030073	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96030073G>A	uc004ati.1	+	16	3742	c.3742G>A	c.(3742-3744)GAG>AAG	p.E1248K	WNK2_uc011lud.1_Missense_Mutation_p.E1248K|WNK2_uc004atj.2_Missense_Mutation_p.E1248K|WNK2_uc004atk.2_Missense_Mutation_p.E885K	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1248					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						AACGTTCATCGAGCAGATGAA	0.602													4	18					0	0	1	0	0
WNK2	65268	broad.mit.edu	37	9	96031005	96031005	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96031005C>T	uc004ati.1	+	18	4010	c.4010C>T	c.(4009-4011)TCC>TTC	p.S1337F	WNK2_uc011lud.1_Missense_Mutation_p.S1337F|WNK2_uc004atj.2_Missense_Mutation_p.S1337F|WNK2_uc004atk.2_Missense_Mutation_p.S974F	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1337					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CCTCTAAGCTCCCTGCCGCCA	0.627													8	32					0	0	1	0	0
WNK2	65268	broad.mit.edu	37	9	96055276	96055276	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96055276C>T	uc004ati.1	+	23	5640	c.5640C>T	c.(5638-5640)TTC>TTT	p.F1880F	WNK2_uc011lud.1_Silent_p.F1843F|WNK2_uc004atj.2_Silent_p.F1843F|WNK2_uc004atk.2_Silent_p.F1480F|WNK2_uc004atl.1_Silent_p.F437F	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1880					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CCACCGCCTTCCTGCAGAGGC	0.692													8	20					0	0	1	0	0
WNK2	65268	broad.mit.edu	37	9	96080179	96080179	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96080179G>A	uc004ati.1	+	30	6764	c.6764G>A	c.(6763-6765)AGA>AAA	p.R2255K	WNK2_uc011lud.1_Intron|WNK2_uc004atj.2_Intron|WNK2_uc004atk.2_3'UTR	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	2255					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						ACCGCCCGGAGAAACCAGGTG	0.682													9	15					0	0	1	0	0
C9orf129	445577	broad.mit.edu	37	9	96097715	96097715	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96097715G>A	uc010mre.2	-	3	670	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_001098808	NP_001092278	Q5T035	CI129_HUMAN	hypothetical protein LOC445577	102										ovary(1)	1						AAGAGCCAGGGAAGTAGGCGG	0.627													12	36					0	0	1	0	0
FAM120A	23196	broad.mit.edu	37	9	96294492	96294492	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96294492C>T	uc004atw.2	+	10	1815	c.1790C>T	c.(1789-1791)CCG>CTG	p.P597L	FAM120A_uc004atx.2_Missense_Mutation_p.P379L|FAM120A_uc004aty.2_Missense_Mutation_p.P378L|FAM120A_uc004atz.2_Missense_Mutation_p.P246L|FAM120A_uc010mrg.2_5'UTR	NM_014612	NP_055427	Q9NZB2	F120A_HUMAN	oxidative stress-associated Src activator	597						cytoplasm|plasma membrane	RNA binding				0						GACCTGCCTCCGGCCGCTCTG	0.418													47	171					0	0	1	0	0
FAM120A	23196	broad.mit.edu	37	9	96312912	96312912	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96312912C>T	uc004atw.2	+	12	2238	c.2213C>T	c.(2212-2214)GCC>GTC	p.A738V	FAM120A_uc004aty.2_Missense_Mutation_p.A519V|FAM120A_uc004atz.2_Missense_Mutation_p.A387V|FAM120A_uc010mrg.2_Missense_Mutation_p.A51V	NM_014612	NP_055427	Q9NZB2	F120A_HUMAN	oxidative stress-associated Src activator	738						cytoplasm|plasma membrane	RNA binding				0						GAGCTAGATGCCTTCCTGGCT	0.557													18	39					0	0	1	0	0
PHF2	5253	broad.mit.edu	37	9	96420455	96420455	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96420455C>T	uc004aub.2	+	10	1323	c.1176C>T	c.(1174-1176)CCC>CCT	p.P392P	PHF2_uc011lug.1_Silent_p.P275P	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	392					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		AGCAGCTGCCCCCTCATCTAG	0.557													4	24					0	0	1	0	0
PTPDC1	138639	broad.mit.edu	37	9	96827036	96827036	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96827036C>T	uc004auf.1	+	2	355	c.15C>T	c.(13-15)GTC>GTT	p.V5V	PTPDC1_uc004aug.1_Silent_p.V5V	NM_177995	NP_818931	A2A3K4	PTPC1_HUMAN	protein tyrosine phosphatase domain containing 1	5							protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1						CTGCAGGAGTCTTGCCTCAGA	0.368													20	47					0	0	1	0	0
PTPDC1	138639	broad.mit.edu	37	9	96860798	96860798	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:96860798C>T	uc004auf.1	+	7	2128	c.1788C>T	c.(1786-1788)GCC>GCT	p.A596A	PTPDC1_uc004aug.1_Silent_p.A596A|PTPDC1_uc004auh.1_Silent_p.A648A|PTPDC1_uc010mrj.1_Silent_p.A650A|PTPDC1_uc010mri.1_Silent_p.A648A	NM_177995	NP_818931	A2A3K4	PTPC1_HUMAN	protein tyrosine phosphatase domain containing 1	596							protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1						CGGCCAAAGCCCTAGCAAATT	0.388													43	82					0	0	1	0	0
FAM22F	54754	broad.mit.edu	37	9	97080982	97080982	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:97080982G>A	uc004aup.1	-	7	2057	c.2036C>T	c.(2035-2037)CCA>CTA	p.P679L		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	679											0		Acute lymphoblastic leukemia(62;0.136)				CTGAGCAGATGGAGACTGAAG	0.612													5	11					0	0	1	0	0
FAM22F	54754	broad.mit.edu	37	9	97081904	97081904	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:97081904G>A	uc004aup.1	-	6	1497	c.1476C>T	c.(1474-1476)ACC>ACT	p.T492T		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	492											0		Acute lymphoblastic leukemia(62;0.136)				CCTGGGCAAGGGTGAGTCCTT	0.612													66	111					0	0	1	0	0
FAM22F	54754	broad.mit.edu	37	9	97082625	97082625	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:97082625C>T	uc004aup.1	-	5	1254	c.1233G>A	c.(1231-1233)GGG>GGA	p.G411G		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	411											0		Acute lymphoblastic leukemia(62;0.136)				CCCCTGTGTCCCCAGGGTGAG	0.622													11	97					0	0	1	0	0
FAM22F	54754	broad.mit.edu	37	9	97082687	97082687	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:97082687G>A	uc004aup.1	-	5	1192	c.1171C>T	c.(1171-1173)CCC>TCC	p.P391S		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	391	Pro-rich.										0		Acute lymphoblastic leukemia(62;0.136)				ACTTCAGGGGGGATCTCCTCA	0.662													46	70					0	0	1	0	0
HIATL1	84641	broad.mit.edu	37	9	97191504	97191504	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:97191504C>T	uc004aur.2	+	3	507	c.238C>T	c.(238-240)CTC>TTC	p.L80F	HIATL1_uc011luh.1_Missense_Mutation_p.L15F	NM_032558	NP_115947	Q5SR56	HIAL1_HUMAN	hippocampus abundant transcript-like 1	80	Cytoplasmic (Potential).				transmembrane transport	integral to membrane|plasma membrane	protein binding|transporter activity			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				ACACACATTCCTCATGAATGG	0.318													9	23					0	0	1	0	0
HIATL1	84641	broad.mit.edu	37	9	97209106	97209106	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:97209106C>T	uc004aur.2	+	7	1000	c.731C>T	c.(730-732)TCG>TTG	p.S244L	HIATL1_uc011luh.1_Missense_Mutation_p.S179L	NM_032558	NP_115947	Q5SR56	HIAL1_HUMAN	hippocampus abundant transcript-like 1	244	Extracellular (Potential).				transmembrane transport	integral to membrane|plasma membrane	protein binding|transporter activity			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				TATTCTCAGTCGTTGAAGAAA	0.353													15	68					0	0	1	0	0
HIATL1	84641	broad.mit.edu	37	9	97218585	97218585	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:97218585C>T	uc004aur.2	+	10	1361	c.1092C>T	c.(1090-1092)GCC>GCT	p.A364A	HIATL1_uc011luh.1_Intron	NM_032558	NP_115947	Q5SR56	HIAL1_HUMAN	hippocampus abundant transcript-like 1	364	Extracellular (Potential).				transmembrane transport	integral to membrane|plasma membrane	protein binding|transporter activity			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				CAATCAGTGCCCTCGTCTCTC	0.582													21	64					0	0	1	0	0
FBP2	8789	broad.mit.edu	37	9	97355969	97355969	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:97355969G>A	uc004auv.2	-	1	107	c.40C>T	c.(40-42)CTG>TTG	p.L14L		NM_003837	NP_003828	O00757	F16P2_HUMAN	fructose-1,6-bisphosphatase 2	14					fructose metabolic process|gluconeogenesis	cytosol	fructose 1,6-bisphosphate 1-phosphatase activity|fructose-2,6-bisphosphate 2-phosphatase activity|metal ion binding				0		Acute lymphoblastic leukemia(62;0.136)				TAGCGGGTCAGGGTGAGCATG	0.552													12	51					0	0	1	0	0
PTCH1	5727	broad.mit.edu	37	9	98209303	98209303	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:98209303G>A	uc004avk.3	-	23	4423	c.4235C>T	c.(4234-4236)CCC>CTC	p.P1412L	PTCH1_uc010mrn.2_Missense_Mutation_p.P204L|PTCH1_uc010mro.2_Missense_Mutation_p.P1261L|PTCH1_uc010mrp.2_Missense_Mutation_p.P1261L|PTCH1_uc010mrq.2_Missense_Mutation_p.P1261L|PTCH1_uc004avl.3_Missense_Mutation_p.P1261L|PTCH1_uc010mrr.2_Missense_Mutation_p.P1346L|PTCH1_uc004avm.3_Missense_Mutation_p.P1411L	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1412	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				AGGCACGTGGGGGTCCTCAAA	0.672									Basal_Cell_Nevus_syndrome				9	96					0	0	1	0	0
PTCH1	5727	broad.mit.edu	37	9	98209620	98209620	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:98209620G>A	uc004avk.3	-	23	4106	c.3918C>T	c.(3916-3918)CCC>CCT	p.P1306P	PTCH1_uc010mrn.2_Silent_p.P98P|PTCH1_uc010mro.2_Silent_p.P1155P|PTCH1_uc010mrp.2_Silent_p.P1155P|PTCH1_uc010mrq.2_Silent_p.P1155P|PTCH1_uc004avl.3_Silent_p.P1155P|PTCH1_uc010mrr.2_Silent_p.P1240P|PTCH1_uc004avm.3_Silent_p.P1305P	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1306	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.P1306S(1)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				CTTCTCTGGGGGGGTCCCTGC	0.647									Basal_Cell_Nevus_syndrome				28	63					0	0	1	0	0
PTCH1	5727	broad.mit.edu	37	9	98209632	98209632	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:98209632G>A	uc004avk.3	-	23	4094	c.3906C>T	c.(3904-3906)CCC>CCT	p.P1302P	PTCH1_uc010mrn.2_Silent_p.P94P|PTCH1_uc010mro.2_Silent_p.P1151P|PTCH1_uc010mrp.2_Silent_p.P1151P|PTCH1_uc010mrq.2_Silent_p.P1151P|PTCH1_uc004avl.3_Silent_p.P1151P|PTCH1_uc010mrr.2_Silent_p.P1236P|PTCH1_uc004avm.3_Silent_p.P1301P	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1302	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.P1302H(2)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				GGTCCCTGCGGGGCTGCTGGC	0.632									Basal_Cell_Nevus_syndrome				27	69					0	0	1	0	0
C9orf102	375748	broad.mit.edu	37	9	98677961	98677961	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:98677961C>T	uc004avt.3	+	5	1221	c.833C>T	c.(832-834)TCA>TTA	p.S278L	C9orf102_uc010mrx.1_RNA|C9orf102_uc011lum.1_5'UTR|C9orf102_uc010mry.1_5'UTR|C9orf102_uc010mrz.2_Missense_Mutation_p.S89L	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	278	Helicase ATP-binding.				DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				TTGGAATGGTCAGCTGTCATT	0.363													17	96					0	0	1	0	0
C9orf102	375748	broad.mit.edu	37	9	98728846	98728846	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:98728846A>G	uc004avt.3	+	14	2371	c.1983A>G	c.(1981-1983)CAA>CAG	p.Q661Q	C9orf102_uc011lum.1_Silent_p.Q363Q|C9orf102_uc010mry.1_Silent_p.Q363Q|C9orf102_uc010mrz.2_Silent_p.Q472Q|C9orf102_uc004avu.2_5'UTR	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	661	Helicase C-terminal.				DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				TGTTTTAGCAACTTCACTGTG	0.393													19	62					0	0	1	0	0
HSD17B3	3293	broad.mit.edu	37	9	99003048	99003048	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99003048C>T	uc004awa.1	-	10	862	c.814G>A	c.(814-816)GAA>AAA	p.E272K	HSD17B3_uc010msc.1_Intron	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	272					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	ACCAAGATTTCATGGGCAAGG	0.473													21	89					0	0	1	0	0
HSD17B3	3293	broad.mit.edu	37	9	99012059	99012059	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99012059G>A	uc004awa.1	-	6	511	c.463C>T	c.(463-465)CAT>TAT	p.H155Y	HSD17B3_uc010msc.1_Missense_Mutation_p.H155Y	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	155					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	ATGTTACAATGGATGAGGCTC	0.398													15	52					0	0	1	0	0
SLC35D2	11046	broad.mit.edu	37	9	99126776	99126776	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99126776G>A	uc004awc.2	-	3	325	c.249C>T	c.(247-249)TTC>TTT	p.F83F	SLC35D2_uc010msd.2_RNA|SLC35D2_uc010mse.2_Silent_p.F83F|SLC35D2_uc010msf.2_Silent_p.F83F|SLC35D2_uc004awd.2_Silent_p.F83F|SLC35D2_uc004awe.2_Silent_p.F83F	NM_007001	NP_008932	Q76EJ3	S35D2_HUMAN	solute carrier family 35, member D2	83	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	nucleotide-sugar transmembrane transporter activity				0		Acute lymphoblastic leukemia(62;0.0167)				CAAAATCAGGGAAGTGAATGA	0.338													46	127					0	0	1	0	0
ZNF367	195828	broad.mit.edu	37	9	99160471	99160471	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99160471G>A	uc004awf.2	-	2	901	c.546C>T	c.(544-546)CTC>CTT	p.L182L	ZNF367_uc004awg.2_Silent_p.L182L	NM_153695	NP_710162	Q7RTV3	ZN367_HUMAN	zinc finger protein 367	182	C2H2-type 1.				regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0167)				TGTGAGCCTGGAGCGATTTCT	0.358													59	206					0	0	1	0	0
LOC441455	441455	broad.mit.edu	37	9	99488111	99488111	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99488111C>T	uc011luo.1	+	1		c.9C>T				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						tggtcaCCACCCCATCCCCAG	0.318													3	6					0	0	1	0	0
CTSL2	1515	broad.mit.edu	37	9	99798833	99798833	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99798833G>A	uc004awt.2	-	5	790	c.593C>T	c.(592-594)TCT>TTT	p.S198F	CTSL2_uc010msi.2_Missense_Mutation_p.S198F|CTSL2_uc004awu.2_Missense_Mutation_p.S143F|CTSL2_uc010msj.1_Missense_Mutation_p.S143F|CTSL2_uc010msk.2_Missense_Mutation_p.S143F	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	198						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				GGATTCCTCAGAGTCCAGGCC	0.488													13	32					0	0	1	0	0
CTSL2	1515	broad.mit.edu	37	9	99798917	99798917	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99798917G>A	uc004awt.2	-	5	706	c.509C>T	c.(508-510)TCG>TTG	p.S170L	CTSL2_uc010msi.2_Missense_Mutation_p.S170L|CTSL2_uc004awu.2_Missense_Mutation_p.S115L|CTSL2_uc010msj.1_Missense_Mutation_p.S115L|CTSL2_uc010msk.2_Missense_Mutation_p.S115L	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	170						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				TTGAGGACGCGAACAGTCCAC	0.527													24	77					0	0	1	0	0
CTSL2	1515	broad.mit.edu	37	9	99800311	99800311	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99800311G>A	uc004awt.2	-	2	212	c.15C>T	c.(13-15)CTC>CTT	p.L5L	CTSL2_uc010msi.2_Silent_p.L5L|CTSL2_uc004awu.2_5'UTR|CTSL2_uc010msj.1_5'UTR|CTSL2_uc010msk.2_5'UTR	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	5						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				CAGCCAGGACGAGCGAAAGAT	0.418													24	68					0	0	1	0	0
CTSL2	1515	broad.mit.edu	37	9	99800315	99800315	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99800315G>A	uc004awt.2	-	2	208	c.11C>T	c.(10-12)TCG>TTG	p.S4L	CTSL2_uc010msi.2_Missense_Mutation_p.S4L|CTSL2_uc004awu.2_5'UTR|CTSL2_uc010msj.1_5'UTR|CTSL2_uc010msk.2_5'UTR	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	4						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				CAGGACGAGCGAAAGATTCAT	0.413													23	64					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	99883946	99883946	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:99883946G>A	uc004aww.1	-	2		c.1848C>T								Homo sapiens cDNA FLJ34611 fis, clone KIDNE2014112.																		GAAGCATGAGGGACAGAAGAG	0.577													7	11					0	0	1	0	0
TDRD7	23424	broad.mit.edu	37	9	100190865	100190865	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:100190865C>T	uc004axj.2	+	2	343	c.118C>T	c.(118-120)CCC>TCC	p.P40S	TDRD7_uc011lux.1_Intron	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	40	Lotus/OST-HTH 1.				lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				AGACTGGATCCCCTTCAAACA	0.483													17	61					0	0	1	0	0
TDRD7	23424	broad.mit.edu	37	9	100235830	100235830	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:100235830C>T	uc004axj.2	+	11	2226	c.2001C>T	c.(1999-2001)CTC>CTT	p.L667L	TDRD7_uc011lux.1_Silent_p.L593L|TDRD7_uc010msp.1_5'UTR|TDRD7_uc011luy.1_Silent_p.L16L	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	667					lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				ATGGGACACTCTACTGCCAGG	0.438													13	183					0	0	1	0	0
HEMGN	55363	broad.mit.edu	37	9	100692463	100692463	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:100692463G>A	uc004axy.2	-	3	1322	c.1214C>T	c.(1213-1215)CCT>CTT	p.P405L	HEMGN_uc004axz.2_Missense_Mutation_p.P405L	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	405					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GAGGTCTTCAGGCCCCGGTGT	0.433													101	206					0	0	1	0	0
HEMGN	55363	broad.mit.edu	37	9	100693400	100693400	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:100693400C>T	uc004axy.2	-	3	385	c.277G>A	c.(277-279)GAA>AAA	p.E93K	HEMGN_uc004axz.2_Missense_Mutation_p.E93K	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	93					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				ATTTCCTTTTCTATCTGTGGC	0.443													24	94					0	0	1	0	0
CORO2A	7464	broad.mit.edu	37	9	100890474	100890474	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:100890474C>T	uc004ayl.2	-	10	1415	c.1149G>A	c.(1147-1149)GAG>GAA	p.E383E	CORO2A_uc004aym.2_Silent_p.E383E|CORO2A_uc004ayk.2_5'Flank	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	383					actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				CGCTGAGCCACTCCTGGGCCG	0.592													96	271					0	0	1	0	0
GABBR2	9568	broad.mit.edu	37	9	101052900	101052900	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101052900G>A	uc004ays.2	-	19	2948	c.2792C>T	c.(2791-2793)CCA>CTA	p.P931L		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	931	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	GAAGGAGGGTGGCACATGTCT	0.692													7	8					0	0	1	0	0
ANKS6	203286	broad.mit.edu	37	9	101546431	101546431	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101546431G>A	uc004ayu.2	-	4	937	c.916C>T	c.(916-918)CAG>TAG	p.Q306*	ANKS6_uc004ayt.2_Nonsense_Mutation_p.Q5*|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	306	ANK 8.									ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				TTGACCAGCTGGAAGTTTCCT	0.498													13	29					0	0	1	0	0
GALNT12	79695	broad.mit.edu	37	9	101585705	101585705	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101585705G>T	uc004ayz.2	+	2	539	c.539G>T	c.(538-540)AGA>ATA	p.R180I		NM_024642	NP_078918	Q8IXK2	GLT12_HUMAN	N-acetylgalactosaminyltransferase 12	180	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(62;0.0559)				TACAGTGATAGAGGTGAGTCC	0.537													12	54					0.00185496	0.00185652	1	1	0
GALNT12	79695	broad.mit.edu	37	9	101608265	101608265	+	Missense_Mutation	SNP	G	A	A	rs137917376		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101608265G>A	uc004ayz.2	+	9	1465	c.1465G>A	c.(1465-1467)GAG>AAG	p.E489K		NM_024642	NP_078918	Q8IXK2	GLT12_HUMAN	N-acetylgalactosaminyltransferase 12	489	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(62;0.0559)				TTAGTTTTTCGAGTACACGTC	0.478													5	36					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101748012	101748012	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101748012G>A	uc004azb.1	+	3	472	c.266G>A	c.(265-267)AGG>AAG	p.R89K	COL15A1_uc004aza.2_Missense_Mutation_p.R89K	NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	89	TSP N-terminal.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				ACCTTCTTCAGGGACTTCGCC	0.612													11	57					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101748315	101748315	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101748315C>T	uc004azb.1	+	3	775	c.569C>T	c.(568-570)TCC>TTC	p.S190F	COL15A1_uc004aza.2_Missense_Mutation_p.S190F	NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	190	TSP N-terminal.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TTCCAGCGGTCCTCCCAGGCT	0.567													24	49					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101765820	101765820	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101765820G>A	uc004azb.1	+	8	1357	c.1151G>A	c.(1150-1152)GGA>GAA	p.G384E		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	384	Nonhelical region 1 (NC1).|1.|4 X tandem repeats.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CCCACCGGGGGACCAACCCTC	0.597													37	54					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101767275	101767275	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101767275C>T	uc004azb.1	+	9	1502	c.1296C>T	c.(1294-1296)GCC>GCT	p.A432A		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	432	Nonhelical region 1 (NC1).|4 X tandem repeats.|2.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GTGGTGTGGCCCCCGGGGAGC	0.622													15	64					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101778392	101778392	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101778392G>A	uc004azb.1	+	11	1844	c.1638G>A	c.(1636-1638)TGG>TGA	p.W546*		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	546	Nonhelical region 1 (NC1).|4.|4 X tandem repeats.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CTGAAAGATGGATCACTCCAG	0.597													4	29					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101797320	101797320	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101797320C>T	uc004azb.1	+	18	2310	c.2104C>T	c.(2104-2106)CCT>TCT	p.P702S		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	702	Triple-helical region 2 (COL2).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CAGAGGCTTACCTGGACCCCC	0.612													14	77					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101818645	101818645	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101818645G>A	uc004azb.1	+	35	3502	c.3296G>A	c.(3295-3297)GGG>GAG	p.G1099E		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1099	Triple-helical region 8 (COL8).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GGGCCACCGGGGCCCCCGGGG	0.622													19	59					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101818647	101818648	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:101818647_101818648CC>TT	uc004azb.1	+	35	3504_3505	c.3298_3299CC>TT	c.(3298-3300)CCC>TTC	p.P1100F		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1100	Triple-helical region 8 (COL8).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GCCACCGGGGCCCCCGGGGCCA	0.624													13	64					0	0	1	0	0
NR4A3	8013	broad.mit.edu	37	9	102607113	102607113	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:102607113C>T	uc004baf.1	+	6	2166	c.1437C>T	c.(1435-1437)GTC>GTT	p.V479V	NR4A3_uc004bag.1_Silent_p.V479V|NR4A3_uc004bai.2_Silent_p.V490V	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	479	Ligand-binding (Potential).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				AGCTGTTTGTCCTCAGACTTT	0.393			T	EWSR1	extraskeletal myxoid chondrosarcoma								16	36					0	0	1	0	0
NR4A3	8013	broad.mit.edu	37	9	102609857	102609857	+	Silent	SNP	C	T	T	rs145134236	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:102609857C>T	uc004baf.1	+	7	2322	c.1593C>T	c.(1591-1593)ATC>ATT	p.I531I	NR4A3_uc004bag.1_Silent_p.I531I|NR4A3_uc004bai.2_Silent_p.I542I	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	531					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				ACCTTGATATCCAAGCCTTAG	0.483			T	EWSR1	extraskeletal myxoid chondrosarcoma								7	79					0	0	1	0	0
TEX10	54881	broad.mit.edu	37	9	103090189	103090189	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:103090189G>A	uc004bas.2	-	8	1896	c.1681C>T	c.(1681-1683)CAT>TAT	p.H561Y	TEX10_uc011lvf.1_Missense_Mutation_p.H400Y|TEX10_uc011lvg.1_Missense_Mutation_p.H564Y	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1	561						integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		GAGCCAAGATGAGCAAGTTGC	0.403													19	38					0	0	1	0	0
TEX10	54881	broad.mit.edu	37	9	103109210	103109210	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:103109210G>A	uc004bas.2	-	3	874	c.659C>T	c.(658-660)TCT>TTT	p.S220F	TEX10_uc011lvf.1_Intron|TEX10_uc011lvg.1_Missense_Mutation_p.S223F|TEX10_uc011lvh.1_Missense_Mutation_p.S155F|TEX10_uc004bat.2_Missense_Mutation_p.S220F	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1	220						integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		CCATTGCTGAGAAGTGAGTCT	0.438													16	79					0	0	1	0	0
LPPR1	54886	broad.mit.edu	37	9	104032266	104032266	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104032266G>A	uc004bbb.2	+	3	567	c.168G>A	c.(166-168)ATG>ATA	p.M56I	LPPR1_uc011lvi.1_Missense_Mutation_p.M32I|LPPR1_uc004bbc.2_Missense_Mutation_p.M56I|LPPR1_uc010mtc.2_Missense_Mutation_p.M40I	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	56						integral to membrane	catalytic activity				0						GAGACTTAATGAAGCCTTACC	0.488													12	43					0	0	1	0	0
LPPR1	54886	broad.mit.edu	37	9	104032288	104032288	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104032288G>A	uc004bbb.2	+	3	589	c.190G>A	c.(190-192)GAA>AAA	p.E64K	LPPR1_uc011lvi.1_Missense_Mutation_p.E40K|LPPR1_uc004bbc.2_Missense_Mutation_p.E64K|LPPR1_uc010mtc.2_Missense_Mutation_p.E48K	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	64						integral to membrane	catalytic activity				0						AGGGACAGAGGAAGAAAGCTT	0.463													4	50					0	0	1	0	0
LPPR1	54886	broad.mit.edu	37	9	104048451	104048451	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104048451G>A	uc004bbb.2	+	4	717	c.318G>A	c.(316-318)GAG>GAA	p.E106E	LPPR1_uc011lvi.1_Silent_p.E82E|LPPR1_uc004bbc.2_Silent_p.E106E|LPPR1_uc010mtc.2_Silent_p.E90E	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	106						integral to membrane	catalytic activity				0						TTGCTCAGGAGAAAACAATTC	0.388													14	101					0	0	1	0	0
LPPR1	54886	broad.mit.edu	37	9	104075163	104075163	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104075163C>T	uc004bbb.2	+	6	1119	c.720C>T	c.(718-720)TTC>TTT	p.F240F	LPPR1_uc011lvi.1_Silent_p.F216F|LPPR1_uc004bbc.2_Silent_p.F240F|LPPR1_uc010mtc.2_Silent_p.F224F	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	240	Helical; (Potential).					integral to membrane	catalytic activity				0						GCACAGCCTTCCTGACAGGCC	0.547													28	111					0	0	1	0	0
LPPR1	54886	broad.mit.edu	37	9	104075171	104075171	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104075171G>A	uc004bbb.2	+	6	1127	c.728G>A	c.(727-729)GGC>GAC	p.G243D	LPPR1_uc011lvi.1_Missense_Mutation_p.G219D|LPPR1_uc004bbc.2_Missense_Mutation_p.G243D|LPPR1_uc010mtc.2_Missense_Mutation_p.G227D	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	243	Helical; (Potential).					integral to membrane	catalytic activity				0						TTCCTGACAGGCCTCAACCGG	0.547													28	115					0	0	1	0	0
BAAT	570	broad.mit.edu	37	9	104125001	104125001	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104125001G>A	uc010mtd.2	-	4	1075	c.966C>T	c.(964-966)TTC>TTT	p.F322F	BAAT_uc004bbd.3_Silent_p.F322F	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	322					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	CTCCTACAATGAAGAGGAATT	0.468													32	94					0	0	1	0	0
BAAT	570	broad.mit.edu	37	9	104125158	104125158	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104125158T>A	uc010mtd.2	-	4	918	c.809A>T	c.(808-810)TAT>TTT	p.Y270F	BAAT_uc004bbd.3_Missense_Mutation_p.Y270F	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	270					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	CTGACCATGATATACCTGTGG	0.438													29	59					0	0	1	0	0
ALDOB	229	broad.mit.edu	37	9	104184165	104184165	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104184165C>T	uc004bbk.2	-	9	1103	c.1021G>A	c.(1021-1023)GGA>AGA	p.G341R		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	341					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				ACATACTGTCCTTTGGCCGCC	0.542													8	52					0	0	1	0	0
ALDOB	229	broad.mit.edu	37	9	104189916	104189916	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104189916C>T	uc004bbk.2	-	5	470	c.388G>A	c.(388-390)GGC>AGC	p.G130S		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	130					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TCTGAGAGGCCATCAAGCCCT	0.507													30	51					0	0	1	0	0
ALDOB	229	broad.mit.edu	37	9	104192174	104192174	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104192174G>A	uc004bbk.2	-	3	269	c.187C>T	c.(187-189)CTC>TTC	p.L63F		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	63					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				ACAGAGAAGAGGATTTCTCGG	0.552													54	103					0	0	1	0	0
C9orf125	84302	broad.mit.edu	37	9	104238223	104238223	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104238223G>A	uc004bbm.2	-	2	1474	c.1152C>T	c.(1150-1152)CTC>CTT	p.L384L	uc004bbl.1_5'Flank	NM_032342	NP_115718	Q9BRR3	CI125_HUMAN	hypothetical protein LOC84302	384						integral to membrane					0		Acute lymphoblastic leukemia(62;0.0527)				TGTGTTTCACGAGGTTCGGCT	0.542													33	53					0	0	1	0	0
C9orf125	84302	broad.mit.edu	37	9	104238436	104238436	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104238436G>A	uc004bbm.2	-	2	1261	c.939C>T	c.(937-939)TTC>TTT	p.F313F	uc004bbl.1_5'Flank	NM_032342	NP_115718	Q9BRR3	CI125_HUMAN	hypothetical protein LOC84302	313						integral to membrane					0		Acute lymphoblastic leukemia(62;0.0527)				GCAGTTCCAGGAAATAGTGCC	0.607													48	78					0	0	1	0	0
C9orf125	84302	broad.mit.edu	37	9	104238592	104238592	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104238592C>T	uc004bbm.2	-	2	1105	c.783G>A	c.(781-783)CGG>CGA	p.R261R	uc004bbl.1_5'Flank	NM_032342	NP_115718	Q9BRR3	CI125_HUMAN	hypothetical protein LOC84302	261	Helical; (Potential).					integral to membrane					0		Acute lymphoblastic leukemia(62;0.0527)				ATTCCAGGATCCGCATGGGCT	0.552													61	71					0	0	1	0	0
C9orf125	84302	broad.mit.edu	37	9	104239033	104239033	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104239033G>A	uc004bbm.2	-	2	664	c.342C>T	c.(340-342)GGC>GGT	p.G114G	uc004bbl.1_5'Flank	NM_032342	NP_115718	Q9BRR3	CI125_HUMAN	hypothetical protein LOC84302	114						integral to membrane					0		Acute lymphoblastic leukemia(62;0.0527)				CGTAGTGGAAGCCAGGCTGCC	0.622													5	54					0	0	1	0	0
C9orf125	84302	broad.mit.edu	37	9	104239109	104239109	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104239109G>A	uc004bbm.2	-	2	588	c.266C>T	c.(265-267)TCA>TTA	p.S89L	uc004bbl.1_5'Flank	NM_032342	NP_115718	Q9BRR3	CI125_HUMAN	hypothetical protein LOC84302	89						integral to membrane					0		Acute lymphoblastic leukemia(62;0.0527)				AATGGGCACTGAGCCATTGGC	0.577													17	24					0	0	1	0	0
RNF20	56254	broad.mit.edu	37	9	104302572	104302572	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104302572C>T	uc004bbn.2	+	3	307	c.217C>T	c.(217-219)CGT>TGT	p.R73C		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20	73	Potential.				histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		AGATGAACTTCGTGAGCACAT	0.453													36	121					0	0	1	0	0
RNF20	56254	broad.mit.edu	37	9	104312939	104312939	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104312939C>T	uc004bbn.2	+	10	1234	c.1144C>T	c.(1144-1146)CGC>TGC	p.R382C		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20	382					histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		TCCAGAATATCGCTGCATGCA	0.438													83	124					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104341555	104341555	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104341555C>T	uc004bbp.1	-	7	3455	c.2854G>A	c.(2854-2856)GAG>AAG	p.E952K	GRIN3A_uc004bbo.1_Missense_Mutation_p.E27K|GRIN3A_uc004bbq.1_Missense_Mutation_p.E952K	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	952	Cytoplasmic (Potential).|PPP2CB binding site (By similarity).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	ACTATGTGCTCACCAATGGTG	0.478													8	44					0	0	1	0	0
PPP3R2	5535	broad.mit.edu	37	9	104356906	104356906	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104356906C>T	uc004bbr.2	-	1	378	c.307G>A	c.(307-309)GAC>AAC	p.D103N	GRIN3A_uc004bbp.1_Intron|GRIN3A_uc004bbq.1_Intron|PPP3R2_uc010mtf.1_RNA	NM_147180	NP_671709	Q96LZ3	CANB2_HUMAN	protein phosphatase 3 regulatory subunit B, beta	100	EF-hand 3.|3.						calcium ion binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)			Cyclosporine(DB00091)	TTATCCATGTCGTAAATGCTG	0.532													29	114					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432383	104432383	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104432383C>T	uc004bbp.1	-	3	2912	c.2311G>A	c.(2311-2313)GAG>AAG	p.E771K	GRIN3A_uc004bbq.1_Missense_Mutation_p.E771K	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	771	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TAGATCTTCTCACCTACCATG	0.383													39	71					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432595	104432595	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104432595G>A	uc004bbp.1	-	3	2700	c.2099C>T	c.(2098-2100)CCA>CTA	p.P700L	GRIN3A_uc004bbq.1_Missense_Mutation_p.P700L	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	700	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CAAACCAAATGGACTCTTCCA	0.493													11	135					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432962	104432962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104432962C>T	uc004bbp.1	-	3	2333	c.1732G>A	c.(1732-1734)GGA>AGA	p.G578R	GRIN3A_uc004bbq.1_Missense_Mutation_p.G578R	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	578	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	ATGCAATATCCATAGCAGCAC	0.418													37	51					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104433089	104433089	+	Silent	SNP	G	A	A	rs143230604	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104433089G>A	uc004bbp.1	-	3	2206	c.1605C>T	c.(1603-1605)GGC>GGT	p.G535G	GRIN3A_uc004bbq.1_Silent_p.G535G	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	535	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CAGGGCACAAGCCTTCATCAT	0.473													34	55					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104449186	104449186	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104449186C>T	uc004bbp.1	-	2	1597	c.996G>A	c.(994-996)ATG>ATA	p.M332I	GRIN3A_uc004bbq.1_Missense_Mutation_p.M332I	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	332	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GGATACTTTCCATGTCGCAGC	0.517													13	41					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104449242	104449242	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104449242G>A	uc004bbp.1	-	2	1541	c.940C>T	c.(940-942)CAG>TAG	p.Q314*	GRIN3A_uc004bbq.1_Nonsense_Mutation_p.Q314*	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	314	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CTCTCAAGCTGGATCTGTAGG	0.488													26	50					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104499567	104499567	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:104499567C>T	uc004bbp.1	-	1	1296	c.695G>A	c.(694-696)AGT>AAT	p.S232N	GRIN3A_uc004bbq.1_Missense_Mutation_p.S232N	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	232	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TCTCACCTGACTCTCCCGTGG	0.602													13	34					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767302	105767302	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:105767302C>T	uc004bbs.2	+	5	459	c.389C>T	c.(388-390)TCG>TTG	p.S130L		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	130	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				ACAACAGATTCGGAATCAGAA	0.189													17	38					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767335	105767335	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:105767335C>T	uc004bbs.2	+	5	492	c.422C>T	c.(421-423)TCA>TTA	p.S141L		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	141	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				aaaaaagattcaaagaaaggc	0.149													8	31					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767500	105767500	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:105767500C>T	uc004bbs.2	+	5	657	c.587C>T	c.(586-588)TCA>TTA	p.S196L		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	196	3 X approximate tandem repeats.|31 X 3 AA repeats of K-K-X.|2.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				aaaaaggaTTCAAACAAAGGC	0.199													6	30					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767661	105767661	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:105767661G>A	uc004bbs.2	+	5	818	c.748G>A	c.(748-750)GAT>AAT	p.D250N		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	250	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				TGGAAAAAAAGATGCAAACAA	0.368													10	48					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767873	105767873	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:105767873G>A	uc004bbs.2	+	5	1030	c.960G>A	c.(958-960)AAG>AAA	p.K320K		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	320	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				aggatgcaaagaaaaatgcta	0.065													7	21					0	0	1	0	0
OR13F1	138805	broad.mit.edu	37	9	107266583	107266583	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107266583T>C	uc011lvm.1	+	1	40	c.40T>C	c.(40-42)TTC>CTC	p.F14L		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						AGTATTTTTCTTCCTGGGATT	0.383													10	70					0	0	1	0	0
OR13F1	138805	broad.mit.edu	37	9	107267485	107267485	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107267485C>T	uc011lvm.1	+	1	942	c.942C>T	c.(940-942)TTC>TTT	p.F314F		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						ATACTGCCTTCATTTCCATCC	0.338													17	52					0	0	1	0	0
OR13C4	138804	broad.mit.edu	37	9	107288793	107288793	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107288793C>T	uc011lvn.1	-	1	698	c.698G>A	c.(697-699)GGA>GAA	p.G233E		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTTGTGTCTTCCTGTGGCCGA	0.428													55	117					0	0	1	0	0
OR13C4	138804	broad.mit.edu	37	9	107288831	107288831	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107288831G>A	uc011lvn.1	-	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTAGAGGATGAACATATAGG	0.408													21	109					0	0	1	0	0
OR13C4	138804	broad.mit.edu	37	9	107288840	107288840	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107288840G>A	uc011lvn.1	-	1	651	c.651C>T	c.(649-651)TCC>TCT	p.S217S		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGAACATATAGGAGAAAAAAA	0.408													10	112					0	0	1	0	0
OR13C4	138804	broad.mit.edu	37	9	107289148	107289148	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107289148G>A	uc011lvn.1	-	1	343	c.343C>T	c.(343-345)CTT>TTT	p.L115F		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATCATGCCAAGGAGGAAACAT	0.438													68	123					0	0	1	0	0
OR13C4	138804	broad.mit.edu	37	9	107289353	107289353	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107289353G>A	uc011lvn.1	-	1	138	c.138C>T	c.(136-138)ATC>ATT	p.I46I		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGCTTGCTATGATCAGAACAC	0.433													41	95					0	0	1	0	0
OR13C4	138804	broad.mit.edu	37	9	107289451	107289451	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107289451G>A	uc011lvn.1	-	1	40	c.40C>T	c.(40-42)CTT>TTT	p.L14F		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGTCCCAGAAGAATGAATTCT	0.398													10	100					0	0	1	0	0
OR13C3	138803	broad.mit.edu	37	9	107298450	107298450	+	Silent	SNP	G	A	A	rs138480673	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107298450G>A	uc004bcb.1	-	1	645	c.645C>T	c.(643-645)CTC>CTT	p.L215L		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	215	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						AGGCCAGCTTGAGGACAGCTA	0.388													33	119					0	0	1	0	0
OR13C3	138803	broad.mit.edu	37	9	107298516	107298516	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107298516G>A	uc004bcb.1	-	1	579	c.579C>T	c.(577-579)GCC>GCT	p.A193A		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						GCAGTCTCATGGCAAGTAATG	0.433													53	114					0	0	1	0	0
OR13C5	138799	broad.mit.edu	37	9	107360822	107360822	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107360822C>T	uc011lvp.1	-	1	873	c.873G>A	c.(871-873)ATG>ATA	p.M291I		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	291	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TTAAAGGATTCATCATGGGAG	0.373													6	82					0	0	1	0	0
OR13C5	138799	broad.mit.edu	37	9	107360936	107360936	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107360936C>T	uc011lvp.1	-	1	759	c.759G>A	c.(757-759)GGG>GGA	p.G253G		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GGAAGATGGTCCCACAGAATG	0.428													22	85					0	0	1	0	0
OR13C5	138799	broad.mit.edu	37	9	107361191	107361191	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107361191G>A	uc011lvp.1	-	1	504	c.504C>T	c.(502-504)TTC>TTT	p.F168F		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	168	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TATTCCTGCAGAAAGGCAATT	0.448													20	194					0	0	1	0	0
OR13C5	138799	broad.mit.edu	37	9	107361307	107361307	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107361307G>A	uc011lvp.1	-	1	388	c.388C>T	c.(388-390)CTG>TTG	p.L130L		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	130	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GGATATCTCAGAGGGTTGCAG	0.512													18	86					0	0	1	0	0
OR13C5	138799	broad.mit.edu	37	9	107361655	107361655	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107361655G>A	uc011lvp.1	-	1	40	c.40C>T	c.(40-42)CTG>TTG	p.L14L		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						AGTCCCTTCAGAAAAAATTCC	0.383													24	91					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367179	107367179	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107367179G>A	uc011lvq.1	-	1	730	c.730C>T	c.(730-732)CAT>TAT	p.H244Y		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACAGTCAGATGGGCTGAACAG	0.413													33	61					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367193	107367193	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107367193G>A	uc011lvq.1	-	1	716	c.716C>T	c.(715-717)TCT>TTT	p.S239F		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGAACAGGTAGAGGAAGCTTT	0.403													29	64					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367196	107367196	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107367196G>A	uc011lvq.1	-	1	713	c.713C>T	c.(712-714)TCC>TTC	p.S238F		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACAGGTAGAGGAAGCTTTGCT	0.398													6	85					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367211	107367211	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107367211C>T	uc011lvq.1	-	1	698	c.698G>A	c.(697-699)GGG>GAG	p.G233E		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTTGCTTCTCCCCTCGGAAGA	0.413													25	68					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367521	107367521	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107367521G>A	uc011lvq.1	-	1	388	c.388C>T	c.(388-390)CTG>TTG	p.L130L		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	130	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GGATATCTCAGAGGGTTGCAG	0.512													9	139					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367630	107367630	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107367630G>A	uc011lvq.1	-	1	279	c.279C>T	c.(277-279)TCC>TCT	p.S93S		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGCCAGAAAGGGAAATGGTCT	0.517													26	99					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367863	107367863	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107367863C>T	uc011lvq.1	-	1	46	c.46G>A	c.(46-48)GGA>AGA	p.G16R		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCAGAAAGTCCCTTCAGAAAA	0.368													16	77					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367888	107367888	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107367888G>A	uc011lvq.1	-	1	21	c.21C>T	c.(19-21)ACC>ACT	p.T7T		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCACCAGAATGGTGTGGTTTT	0.368													22	88					0	0	1	0	0
OR13C9	286362	broad.mit.edu	37	9	107379817	107379817	+	Silent	SNP	G	A	A	rs74950199		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107379817G>A	uc011lvr.1	-	1	669	c.669C>T	c.(667-669)TCC>TCT	p.S223S		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGAGGATGCTGGAAATGATTA	0.443													37	66					0	0	1	0	0
OR13C9	286362	broad.mit.edu	37	9	107380046	107380046	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107380046C>T	uc011lvr.1	-	1	440	c.440G>A	c.(439-441)GGG>GAG	p.G147E		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAACCAGGACCCAACAGCCAT	0.453													51	91					0	0	1	0	0
OR13C9	286362	broad.mit.edu	37	9	107380208	107380208	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107380208G>A	uc011lvr.1	-	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCCAGAAAAGGAAATGGTCTT	0.502													32	120					0	0	1	0	0
ABCA1	19	broad.mit.edu	37	9	107646739	107646739	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:107646739G>A	uc004bcl.2	-	4	584	c.271C>T	c.(271-273)CCC>TCC	p.P91S	ABCA1_uc004bcm.2_Missense_Mutation_p.P31S	NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	91	Extracellular.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ACAACTCCGGGAGCCTCCCCA	0.453													18	61					0	0	1	0	0
SLC44A1	23446	broad.mit.edu	37	9	108127887	108127887	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:108127887C>T	uc004bcn.2	+	11	1598	c.1377C>T	c.(1375-1377)ATC>ATT	p.I459I	SLC44A1_uc010mtk.1_Silent_p.I459I|SLC44A1_uc004bco.1_Silent_p.I251I	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	459	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	CGCGAATGATCCTTATGTATA	0.408													31	100					0	0	1	0	0
TAL2	6887	broad.mit.edu	37	9	108425072	108425072	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:108425072C>T	uc004bct.2	+	1	335	c.295C>T	c.(295-297)CCT>TCT	p.P99S		NM_005421	NP_005412	Q16559	TAL2_HUMAN	T-cell acute lymphocytic leukemia 2	99					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						CTACCAGGTTCCTTCACCTGG	0.572			T	TRB@	T-ALL								8	21					0	0	1	0	0
ZNF462	58499	broad.mit.edu	37	9	109686778	109686778	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:109686778C>T	uc004bcz.2	+	3	874	c.585C>T	c.(583-585)CCC>CCT	p.P195P	ZNF462_uc010mto.2_Silent_p.P43P|ZNF462_uc004bda.2_Silent_p.P43P	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	195					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						CCACTGCTCCCCCACCTGCTC	0.512													21	36					0	0	1	0	0
ZNF462	58499	broad.mit.edu	37	9	109688977	109688977	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:109688977G>A	uc004bcz.2	+	3	3073	c.2784G>A	c.(2782-2784)CGG>CGA	p.R928R	ZNF462_uc010mto.2_Silent_p.R776R|ZNF462_uc004bda.2_Silent_p.R776R	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	928	C2H2-type 9.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						ACCGGTGTCGGTTTTGTTCAT	0.473													12	140					0	0	1	0	0
ZNF462	58499	broad.mit.edu	37	9	109690130	109690130	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:109690130C>T	uc004bcz.2	+	3	4226	c.3937C>T	c.(3937-3939)CAC>TAC	p.H1313Y	ZNF462_uc010mto.2_Missense_Mutation_p.H1161Y|ZNF462_uc004bda.2_Missense_Mutation_p.H1161Y	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1313					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						AGCTGGCTACCACTGCGAGTG	0.517													14	141					0	0	1	0	0
RAD23B	5887	broad.mit.edu	37	9	110081045	110081045	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:110081045C>A	uc004bde.2	+	6	933	c.566C>A	c.(565-567)TCT>TAT	p.S189Y	RAD23B_uc011lwa.1_Missense_Mutation_p.S189Y|RAD23B_uc011lwb.1_Missense_Mutation_p.S168Y	NM_002874	NP_002865	P54727	RD23B_HUMAN	UV excision repair protein RAD23 homolog B	189	UBA 1.				nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleoplasm|proteasome complex|XPC complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			ovary(1)	1						ACGGGTCAGTCTTACGAGAAT	0.353								Direct_reversal_of_damage|NER					56	98					1.64573e-32	1.65589e-32	1	1	0
KLF4	9314	broad.mit.edu	37	9	110249798	110249798	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:110249798G>A	uc004bdh.2	-	3	1471	c.850C>T	c.(850-852)CCT>TCT	p.P284S	KLF4_uc004bdf.1_Missense_Mutation_p.P243S|KLF4_uc004bdg.2_Missense_Mutation_p.P293S	NM_004235	NP_004226	O43474	KLF4_HUMAN	Kruppel-like factor 4 (gut)	293	Pro-rich.				fat cell differentiation|mesodermal cell fate determination|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|stem cell maintenance|transcription from RNA polymerase II promoter	nucleus	RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor recruiting transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(2)|lung(1)	3						TTGCTGAGAGGGGGTCCAGCG	0.701													4	17					0	0	1	0	0
ACTL7B	10880	broad.mit.edu	37	9	111617544	111617544	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:111617544C>T	uc004bdi.2	-	1	732	c.667G>A	c.(667-669)GAC>AAC	p.D223N		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	223						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						CCAGCGTAGTCGGCGCGGCTG	0.657													14	59					0	0	1	0	0
ACTL7B	10880	broad.mit.edu	37	9	111617754	111617754	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:111617754G>A	uc004bdi.2	-	1	522	c.457C>T	c.(457-459)CCG>TCG	p.P153S		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	153						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						GGGCTGAGCGGAGGGTCGGAG	0.622													9	42					0	0	1	0	0
ACTL7A	10881	broad.mit.edu	37	9	111624631	111624631	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:111624631G>A	uc004bdj.1	+	1	29	c.29G>A	c.(28-30)GGG>GAG	p.G10E		NM_006687	NP_006678	Q9Y615	ACL7A_HUMAN	actin-like 7A	10						cytoplasm|cytoskeleton|protein complex	structural constituent of cytoskeleton				0						GCAATCATGGGGGATGGGCCC	0.597													22	63					0	0	1	0	0
ACTL7A	10881	broad.mit.edu	37	9	111625524	111625524	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:111625524G>A	uc004bdj.1	+	1	922	c.922G>A	c.(922-924)GAG>AAG	p.E308K		NM_006687	NP_006678	Q9Y615	ACL7A_HUMAN	actin-like 7A	308						cytoplasm|cytoskeleton|protein complex	structural constituent of cytoskeleton				0						GGATGGGAAGGAGATTCAGCT	0.542													24	58					0	0	1	0	0
C9orf5	23731	broad.mit.edu	37	9	111812952	111812952	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:111812952G>A	uc004bdt.3	-	13	1907	c.1875C>T	c.(1873-1875)ATC>ATT	p.I625I	C9orf5_uc004bds.3_RNA|C9orf5_uc004bdr.3_Silent_p.I617I	NM_032012	NP_114401	Q9H330	CI005_HUMAN	hypothetical protein LOC23731	625						integral to membrane				central_nervous_system(1)	1		Myeloproliferative disorder(63;0.204)		OV - Ovarian serous cystadenocarcinoma(323;3.08e-05)|STAD - Stomach adenocarcinoma(157;0.0823)		GGCTCATAACGATCCACAGAG	0.458													15	37					0	0	1	0	0
C9orf4	23732	broad.mit.edu	37	9	111903821	111903821	+	Missense_Mutation	SNP	G	A	A	rs143745415		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:111903821G>A	uc004bdw.1	-	4	664	c.664C>T	c.(664-666)CGC>TGC	p.R222C		NM_014334	NP_055149	Q9P0K9	CI004_HUMAN	hypothetical protein LOC23732	222	DOMON.					integral to membrane					0						TGCTGTATGCGGACCCTGCCA	0.448													48	60					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111936872	111936872	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:111936872C>T	uc004bdz.1	-	26	2960	c.2665G>A	c.(2665-2667)GAG>AAG	p.E889K		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	889						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						ATCATCTTCTCTCTCTCCAGT	0.428													5	53					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111979231	111979231	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:111979231G>A	uc004bdz.1	-	16	1899	c.1604C>T	c.(1603-1605)TCC>TTC	p.S535F		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	535						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GGAGTTTGGGGACCTCAGAGG	0.453													44	165					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	112018759	112018759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112018759C>T	uc004bdz.1	-	8	1049	c.754G>A	c.(754-756)GGA>AGA	p.G252R	EPB41L4B_uc004bea.2_Missense_Mutation_p.G252R	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	252	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GGGCTCTTTCCCCTTAGAAAA	0.473													18	76					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	112020521	112020521	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112020521G>A	uc004bdz.1	-	7	983	c.688C>T	c.(688-690)CGG>TGG	p.R230W	EPB41L4B_uc004bea.2_Missense_Mutation_p.R230W	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	230	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GGAATGAACCGAAACTCAGAC	0.443													12	65					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	112029769	112029769	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112029769G>A	uc004bdz.1	-	4	812	c.517C>T	c.(517-519)CGT>TGT	p.R173C	EPB41L4B_uc004bea.2_Missense_Mutation_p.R173C	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	173	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						AACTCCTCACGAAGGTTGTTT	0.443													37	64					0	0	1	0	0
PTPN3	5774	broad.mit.edu	37	9	112144721	112144721	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112144721C>T	uc004bed.2	-	24	2501	c.2389G>A	c.(2389-2391)GAA>AAA	p.E797K	PTPN3_uc004beb.2_Missense_Mutation_p.E666K|PTPN3_uc004bec.2_Missense_Mutation_p.E621K|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.E752K|PTPN3_uc011lwh.1_Missense_Mutation_p.E643K|PTPN3_uc011lwd.1_Missense_Mutation_p.E265K|PTPN3_uc011lwe.1_Missense_Mutation_p.E510K|PTPN3_uc011lwf.1_Missense_Mutation_p.E465K	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	797	Tyrosine-protein phosphatase.				negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						GTGTGTTCTTCCCCGGTCTGT	0.577													30	23					0	0	1	0	0
PTPN3	5774	broad.mit.edu	37	9	112145801	112145801	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112145801G>A	uc004bed.2	-	23	2396	c.2284C>T	c.(2284-2286)CCC>TCC	p.P762S	PTPN3_uc004beb.2_Missense_Mutation_p.P631S|PTPN3_uc004bec.2_Missense_Mutation_p.P586S|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.P717S|PTPN3_uc011lwh.1_Missense_Mutation_p.P608S|PTPN3_uc011lwd.1_Missense_Mutation_p.P230S|PTPN3_uc011lwe.1_Missense_Mutation_p.P475S|PTPN3_uc011lwf.1_Missense_Mutation_p.P430S	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	762	Tyrosine-protein phosphatase.				negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						ATGACGTCGGGGGGATCTGGC	0.557													21	92					0	0	1	0	0
PTPN3	5774	broad.mit.edu	37	9	112172609	112172609	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112172609G>A	uc004bed.2	-	15	1512	c.1400C>T	c.(1399-1401)TCC>TTC	p.S467F	PTPN3_uc004beb.2_Missense_Mutation_p.S336F|PTPN3_uc004bec.2_Missense_Mutation_p.S291F|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.S422F|PTPN3_uc011lwh.1_Missense_Mutation_p.S313F|PTPN3_uc011lwd.1_5'UTR|PTPN3_uc011lwe.1_Missense_Mutation_p.S180F|PTPN3_uc011lwf.1_Missense_Mutation_p.S135F	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	467					negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						AGGTGAGCAGGAGCCTGGAGC	0.537													43	82					0	0	1	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112705119	112705119	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112705119G>A	uc004bei.2	+	7	842	c.650G>A	c.(649-651)GGA>GAA	p.G217E	PALM2_uc004bef.2_Missense_Mutation_p.G219E|PALM2_uc004beg.2_Missense_Mutation_p.G185E|PALM2_uc004beh.3_Missense_Mutation_p.G217E|PALM2-AKAP2_uc004bek.3_Intron|PALM2-AKAP2_uc004bej.3_Intron|PALM2-AKAP2_uc004bel.1_Intron	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						GTGCGCTCAGGAGGCACCGTA	0.468													4	44					0	0	1	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112705447	112705447	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112705447G>A	uc004bei.2	+	7	1170	c.978G>A	c.(976-978)ACG>ACA	p.T326T	PALM2_uc004bef.2_Silent_p.T328T|PALM2_uc004beg.2_Silent_p.T294T|PALM2_uc004beh.3_Silent_p.T326T|PALM2-AKAP2_uc004bek.3_Intron|PALM2-AKAP2_uc004bej.3_Intron|PALM2-AKAP2_uc004bel.1_Intron	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	Error:Variant_position_missing_in_Q9Y2D5_after_alignment							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						AAGAGGAGACGAAAAAGGTGC	0.502													34	82					0	0	1	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112899021	112899021	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112899021C>T	uc004bei.2	+	9	2085	c.1893C>T	c.(1891-1893)TTC>TTT	p.F631F	PALM2-AKAP2_uc004bek.3_Silent_p.F399F|PALM2-AKAP2_uc004bej.3_Silent_p.F399F|PALM2-AKAP2_uc004bel.1_Silent_p.F209F|AKAP2_uc011lwi.1_Silent_p.F257F|AKAP2_uc004bem.2_Silent_p.F257F|PALM2-AKAP2_uc010mtw.1_Silent_p.F217F|AKAP2_uc011lwj.1_Silent_p.F168F|PALM2-AKAP2_uc004ben.2_Silent_p.F168F	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	168							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						ATGGAGAGTTCACTCTCACCA	0.577													17	36					0	0	1	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112899267	112899267	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112899267C>T	uc004bei.2	+	9	2331	c.2139C>T	c.(2137-2139)ATC>ATT	p.I713I	PALM2-AKAP2_uc004bek.3_Silent_p.I481I|PALM2-AKAP2_uc004bej.3_Silent_p.I481I|PALM2-AKAP2_uc004bel.1_Silent_p.I291I|AKAP2_uc011lwi.1_Silent_p.I339I|AKAP2_uc004bem.2_Silent_p.I339I|PALM2-AKAP2_uc010mtw.1_Silent_p.I299I|AKAP2_uc011lwj.1_Silent_p.I250I|PALM2-AKAP2_uc004ben.2_Silent_p.I250I	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	250	Potential.						enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						AAAAAACCATCGAGGAGCAGC	0.453													15	40					0	0	1	0	0
C9orf152	401546	broad.mit.edu	37	9	112963360	112963360	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112963360G>A	uc011lwk.1	-	2	1142	c.588C>T	c.(586-588)TTC>TTT	p.F196F		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	196											0						ATTGAGTGCTGAATTTTAAGC	0.502													12	85					0	0	1	0	0
C9orf152	401546	broad.mit.edu	37	9	112963511	112963511	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112963511C>T	uc011lwk.1	-	2	991	c.437G>A	c.(436-438)GGA>GAA	p.G146E		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	146											0						TTGATCAGATCCCACAAGCTT	0.532													69	173					0	0	1	0	0
C9orf152	401546	broad.mit.edu	37	9	112963672	112963672	+	Silent	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:112963672T>C	uc011lwk.1	-	2	830	c.276A>G	c.(274-276)GAA>GAG	p.E92E		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	92											0						AATCTGCCTCTTCCAGGGACA	0.552													10	49					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113163237	113163237	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113163237G>A	uc010mtz.2	-	40	10056	c.9719C>T	c.(9718-9720)TCT>TTT	p.S3240F	SVEP1_uc010mty.2_Missense_Mutation_p.S1166F	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3240	Sushi 31.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TTTCCCACAAGAAACTGGACT	0.388													13	40					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113166771	113166771	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113166771G>A	uc010mtz.2	-	39	9839	c.9502C>T	c.(9502-9504)CGC>TGC	p.R3168C	SVEP1_uc010mty.2_Missense_Mutation_p.R1094C	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3168	Sushi 29.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GGGAACCAGCGACCATCTTTC	0.413													111	203					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113168633	113168633	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113168633C>T	uc010mtz.2	-	38	9584	c.9247G>A	c.(9247-9249)GAA>AAA	p.E3083K	SVEP1_uc010mty.2_Missense_Mutation_p.E1009K	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3083	Sushi 28.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ATCACATTTTCCTTCCAAGAG	0.473													39	132					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113169251	113169251	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113169251C>T	uc010mtz.2	-	38	8966	c.8629G>A	c.(8629-8631)GGA>AGA	p.G2877R	SVEP1_uc010mty.2_Missense_Mutation_p.G803R	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2877	Sushi 24.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTCCAACTTCCATTGGCAAGA	0.537													16	46					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113169566	113169566	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113169566C>T	uc010mtz.2	-	38	8651	c.8314G>A	c.(8314-8316)GCC>ACC	p.A2772T	SVEP1_uc010mty.2_Missense_Mutation_p.A698T	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2772	Sushi 22.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CATGAAATGGCTTCACAGCGT	0.463													38	86					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113169985	113169985	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113169985C>T	uc010mtz.2	-	38	8232	c.7895G>A	c.(7894-7896)GGA>GAA	p.G2632E	SVEP1_uc010mty.2_Missense_Mutation_p.G558E	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2632					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTCAAAATATCCCTGGTCATC	0.438													53	213					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113170685	113170685	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113170685G>A	uc010mtz.2	-	38	7532	c.7195C>T	c.(7195-7197)CAT>TAT	p.H2399Y	SVEP1_uc010mty.2_Missense_Mutation_p.H325Y	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2399	Sushi 17.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTTCCAAAATGAAGAGCAGAA	0.458													9	26					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113171163	113171163	+	Silent	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113171163T>G	uc010mtz.2	-	38	7054	c.6717A>C	c.(6715-6717)GGA>GGC	p.G2239G	SVEP1_uc010mty.2_Silent_p.G165G	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2239	Sushi 14.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ATACAGGACTTCCGACTGACT	0.507													17	140					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113173432	113173432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113173432C>T	uc010mtz.2	-	37	6896	c.6559G>A	c.(6559-6561)GAA>AAA	p.E2187K	SVEP1_uc010mty.2_Missense_Mutation_p.E113K	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2187	Sushi 13.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCTGTGGCTTCGCAGGTGCTC	0.507													20	69					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113196700	113196700	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113196700C>T	uc010mtz.2	-	30	5312	c.4975G>A	c.(4975-4977)GAT>AAT	p.D1659N		NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1659	Sushi 5.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AAGCCTGGATCACAGAACAGA	0.502													8	22					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113208245	113208245	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113208245G>A	uc010mtz.2	-	26	4672	c.4335C>T	c.(4333-4335)CTC>CTT	p.L1445L	SVEP1_uc010mua.1_Silent_p.L1445L	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1445	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GGAGAGATGGGAGCATGCCAT	0.438													13	45					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113212415	113212415	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113212415C>T	uc010mtz.2	-	24	4364	c.4027G>A	c.(4027-4029)GGA>AGA	p.G1343R	SVEP1_uc010mua.1_Missense_Mutation_p.G1343R	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1343	EGF-like 4; calcium-binding (Potential).				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ACGTTCTTTCCACATCGGGTA	0.458													29	283					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113276350	113276350	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113276350G>A	uc010mtz.2	-	4	1338	c.1001C>T	c.(1000-1002)CCA>CTA	p.P334L	SVEP1_uc010mua.1_Missense_Mutation_p.P334L|SVEP1_uc004beu.2_Missense_Mutation_p.P334L|SVEP1_uc004bev.2_Missense_Mutation_p.P78L	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	334					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GATTCCTCCTGGTGAGCCTTC	0.512													7	9					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113312259	113312259	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113312259G>A	uc010mtz.2	-	2	994	c.657C>T	c.(655-657)TTC>TTT	p.F219F	SVEP1_uc010mua.1_Silent_p.F219F|SVEP1_uc004beu.2_Silent_p.F219F|SVEP1_uc004bev.2_5'UTR	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	219	VWFA.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TGCCAAAAGTGAAGATCTCCA	0.458													13	54					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113496530	113496530	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113496530G>A	uc004bey.2	+	6	727	c.629_splice	c.e6-1	p.V210_splice	MUSK_uc004bex.2_Splice_Site_p.V220_splice	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase						transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CTTCCTAACAGTTTTTGCCAG	0.393													5	17					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113496541	113496541	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113496541G>A	uc004bey.2	+	6	737	c.639G>A	c.(637-639)AGG>AGA	p.R213R	MUSK_uc004bex.2_Silent_p.R223R	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	213	Ig-like 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TTTTTGCCAGGATCCTGCGGG	0.423													5	21					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113538213	113538213	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113538213C>T	uc004bey.2	+	9	1428	c.1330C>T	c.(1330-1332)CCC>TCC	p.P444S	MUSK_uc004bez.1_Missense_Mutation_p.P32S	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	444	FZ.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						GCATTGGGACCCCACGGCCTG	0.488													14	210					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113547155	113547155	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113547155C>T	uc004bey.2	+	11	1543	c.1445C>T	c.(1444-1446)TCC>TTC	p.S482F	MUSK_uc004bez.1_Missense_Mutation_p.S62F	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	482	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CCTTCCTCCTCCTCTTCTTCC	0.403													40	67					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113547238	113547238	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113547238C>T	uc004bey.2	+	11	1626	c.1528C>T	c.(1528-1530)CTT>TTT	p.L510F	MUSK_uc004bez.1_Missense_Mutation_p.L90F	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	510	Helical; (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						ATTTGTGCTTCTTACCATAAC	0.373													40	123					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113549986	113549986	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113549986C>T	uc004bey.2	+	13	1893	c.1795C>T	c.(1795-1797)CCC>TCC	p.P599S	MUSK_uc004bez.1_Missense_Mutation_p.P179S	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	599	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						AGGCTTACTTCCCTATGAACC	0.443													9	23					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113562671	113562671	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113562671C>T	uc004bey.2	+	14	2111	c.2013C>T	c.(2011-2013)TCC>TCT	p.S671S	MUSK_uc004bez.1_Silent_p.S251S	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	671	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						GCAGCATGTCCCCTCACACCG	0.572													35	120					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113562887	113562887	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113562887C>T	uc004bey.2	+	14	2327	c.2229C>T	c.(2227-2229)GAC>GAT	p.D743D	MUSK_uc004bez.1_Silent_p.D323D	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	743	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						AAATTGCCGACTTTGGCCTCT	0.483													67	161					0	0	1	0	0
LPAR1	1902	broad.mit.edu	37	9	113637901	113637901	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113637901G>A	uc004bfa.2	-	5	1150	c.895C>T	c.(895-897)CTT>TTT	p.L299F	LPAR1_uc011lwm.1_Missense_Mutation_p.L300F|LPAR1_uc004bfb.2_Missense_Mutation_p.L299F|LPAR1_uc004bfc.2_Missense_Mutation_p.L299F|LPAR1_uc011lwn.1_Missense_Mutation_p.L281F|LPAR1_uc011lwo.1_Missense_Mutation_p.L300F|LPAR1_uc010mub.2_Missense_Mutation_p.L299F	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	299	Helical; Name=7; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						AATTCAGCAAGGAGAAGGAAG	0.502													38	87					0	0	1	0	0
LPAR1	1902	broad.mit.edu	37	9	113703756	113703756	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113703756G>A	uc004bfa.2	-	4	993	c.738C>T	c.(736-738)CCC>CCT	p.P246P	LPAR1_uc011lwm.1_Silent_p.P247P|LPAR1_uc004bfb.2_Silent_p.P246P|LPAR1_uc004bfc.2_Silent_p.P246P|LPAR1_uc011lwn.1_Silent_p.P228P|LPAR1_uc011lwo.1_Silent_p.P247P|LPAR1_uc010mub.2_Silent_p.P246P	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	246	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						GATTCCGCCGGGGTCCAGAAC	0.453													23	55					0	0	1	0	0
LPAR1	1902	broad.mit.edu	37	9	113703917	113703917	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113703917C>T	uc004bfa.2	-	4	832	c.577G>A	c.(577-579)GAA>AAA	p.E193K	LPAR1_uc011lwm.1_Missense_Mutation_p.E194K|LPAR1_uc004bfb.2_Missense_Mutation_p.E193K|LPAR1_uc004bfc.2_Missense_Mutation_p.E193K|LPAR1_uc011lwn.1_Missense_Mutation_p.E175K|LPAR1_uc011lwo.1_Missense_Mutation_p.E194K|LPAR1_uc010mub.2_Missense_Mutation_p.E193K	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	193	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						GAACAATTTTCAATATCACAG	0.483													41	71					0	0	1	0	0
LPAR1	1902	broad.mit.edu	37	9	113704124	113704124	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:113704124G>A	uc004bfa.2	-	4	625	c.370C>T	c.(370-372)CGT>TGT	p.R124C	LPAR1_uc011lwm.1_Missense_Mutation_p.R125C|LPAR1_uc004bfb.2_Missense_Mutation_p.R124C|LPAR1_uc004bfc.2_Missense_Mutation_p.R124C|LPAR1_uc011lwn.1_Missense_Mutation_p.R106C|LPAR1_uc011lwo.1_Missense_Mutation_p.R125C|LPAR1_uc010mub.2_Missense_Mutation_p.R124C	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	124	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						AGGCCCTGACGAAGGAGCCAT	0.527													36	109					0	0	1	0	0
OR2K2	26248	broad.mit.edu	37	9	114090282	114090282	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114090282C>T	uc011lwp.1	-	1	432	c.432G>A	c.(430-432)ATG>ATA	p.M144I		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	173	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AGACCGTAGCCATCCGTGCAC	0.547													29	70					0	0	1	0	0
OR2K2	26248	broad.mit.edu	37	9	114090533	114090533	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114090533A>G	uc011lwp.1	-	1	181	c.181T>C	c.(181-183)TTA>CTA	p.L61L		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	90	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCAAGGAATAAGTACATGGGG	0.413													21	86					0	0	1	0	0
KIAA0368	23392	broad.mit.edu	37	9	114145514	114145514	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114145514G>A	uc004bfe.1	-	36	4314	c.4314C>T	c.(4312-4314)ACC>ACT	p.T1438T		NM_001080398	NP_001073867			KIAA0368 protein												0						CTTCCGTCACGGTGCTCATCA	0.483													10	13					0	0	1	0	0
ZNF483	158399	broad.mit.edu	37	9	114289764	114289764	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114289764G>A	uc004bff.2	+	2	313	c.89G>A	c.(88-90)AGA>AAA	p.R30K	ZNF483_uc011lwq.1_Missense_Mutation_p.R30K|ZNF483_uc004bfg.2_Missense_Mutation_p.R30K|ZNF483_uc010mud.1_Missense_Mutation_p.R30K	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	30					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						GAGGTCCCAAGAGTGGTTACT	0.458													41	56					0	0	1	0	0
ZNF483	158399	broad.mit.edu	37	9	114289975	114289975	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114289975C>T	uc004bff.2	+	2	524	c.300C>T	c.(298-300)TTC>TTT	p.F100F	ZNF483_uc011lwq.1_Silent_p.F100F|ZNF483_uc004bfg.2_Silent_p.F100F|ZNF483_uc010mud.1_Silent_p.F100F	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	100	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						TTGAGCAGTTCCTGACCATTT	0.473													33	75					0	0	1	0	0
ZNF483	158399	broad.mit.edu	37	9	114296106	114296106	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114296106G>A	uc004bff.2	+	4	813	c.589G>A	c.(589-591)GAA>AAA	p.E197K	ZNF483_uc011lwq.1_Missense_Mutation_p.E197K|ZNF483_uc004bfg.2_Missense_Mutation_p.E197K	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	197	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						GCTATATAAGGAAGTGCTACT	0.398													55	77					0	0	1	0	0
ZNF483	158399	broad.mit.edu	37	9	114296614	114296614	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114296614C>T	uc004bff.2	+	5	926	c.702C>T	c.(700-702)GTC>GTT	p.V234V	ZNF483_uc011lwq.1_Silent_p.V234V|ZNF483_uc004bfg.2_Silent_p.V234V	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	234	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						TGGAAGAAGTCTCAAAAAGCT	0.393													17	92					0	0	1	0	0
ZNF483	158399	broad.mit.edu	37	9	114304291	114304291	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114304291G>A	uc004bff.2	+	6	1300	c.1076G>A	c.(1075-1077)CGG>CAG	p.R359Q	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	359					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						GAAAAGTCACGGAAATCTAAT	0.438													40	66					0	0	1	0	0
ZNF483	158399	broad.mit.edu	37	9	114305109	114305109	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114305109G>A	uc004bff.2	+	6	2118	c.1894G>A	c.(1894-1896)GAA>AAA	p.E632K	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	632					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						TCATTCAGGAGAAAAACCCTA	0.373													13	58					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	114371455	114371455	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114371455C>T	uc004bfk.3	-	2		c.345G>A								Homo sapiens chromosome 9 open reading frame 29, mRNA (cDNA clone MGC:39589 IMAGE:4838739), complete cds.																		AGTCCGTCTTCAAGGTCCGGA	0.498													16	126					0	0	1	0	0
C9orf84	158401	broad.mit.edu	37	9	114503831	114503831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114503831C>T	uc004bfr.2	-	9	1042	c.907G>A	c.(907-909)GAA>AAA	p.E303K	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfs.1_Missense_Mutation_p.E367K|C9orf84_uc004bfq.2_Missense_Mutation_p.E264K|C9orf84_uc010mug.2_Missense_Mutation_p.E249K	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	303										ovary(2)	2						TTAGCTGATTCTTCAGCAGTA	0.254													21	55					0	0	1	0	0
SUSD1	64420	broad.mit.edu	37	9	114874094	114874094	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:114874094G>A	uc004bfu.2	-	8	1052	c.1011C>T	c.(1009-1011)GAC>GAT	p.D337D	SUSD1_uc010mui.2_Silent_p.D337D|SUSD1_uc010muj.2_Silent_p.D337D	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	337	Extracellular (Potential).					integral to membrane	calcium ion binding				0						ATTCCATAGGGTCCAACCGTT	0.507													22	48					0	0	1	0	0
KIAA1958	158405	broad.mit.edu	37	9	115421590	115421590	+	Silent	SNP	C	T	T	rs151231750	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:115421590C>T	uc004bgf.1	+	4	1567	c.1392C>T	c.(1390-1392)ACC>ACT	p.T464T	KIAA1958_uc011lwx.1_Silent_p.T492T	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	464										skin(1)	1						TTTATGTCACCGTCAAGAAGA	0.542													33	51					0	0	1	0	0
KIAA1958	158405	broad.mit.edu	37	9	115422330	115422330	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:115422330C>T	uc004bgf.1	+	4	2307	c.2132C>T	c.(2131-2133)TCC>TTC	p.S711F	KIAA1958_uc011lwx.1_Missense_Mutation_p.S739F	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	711										skin(1)	1						AGGCTTGGCTCCCACAGCTGC	0.612													27	74					0	0	1	0	0
ZNF883	169834	broad.mit.edu	37	9	115760054	115760054	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:115760054G>A	uc011lwy.1	-	5	1725	c.486C>T	c.(484-486)TTC>TTT	p.F162F		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	162	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGCTGCGGCTGAAGGTTTTTC	0.403													8	71					0	0	1	0	0
ZNF883	169834	broad.mit.edu	37	9	115760080	115760080	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:115760080C>T	uc011lwy.1	-	5	1699	c.460G>A	c.(460-462)GAA>AAA	p.E154K		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	154	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCAGTACATTCATATGGTTTC	0.403													7	64					0	0	1	0	0
ZNF883	169834	broad.mit.edu	37	9	115760190	115760190	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:115760190C>T	uc011lwy.1	-	5	1589	c.350G>A	c.(349-351)AGA>AAA	p.R117K		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	117	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTATGGATTCTCTCATGATT	0.383													17	28					0	0	1	0	0
ZFP37	7539	broad.mit.edu	37	9	115805519	115805519	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:115805519G>A	uc004bgm.1	-	4	1407	c.1379C>T	c.(1378-1380)CCC>CTC	p.P460L	ZFP37_uc011lwz.1_Missense_Mutation_p.P475L|ZFP37_uc011lxa.1_Missense_Mutation_p.P461L	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	460						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ACATTCAAAGGGTTTCTCACC	0.353													17	48					0	0	1	0	0
ZFP37	7539	broad.mit.edu	37	9	115806300	115806300	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:115806300T>C	uc004bgm.1	-	4	626	c.598A>G	c.(598-600)AGG>GGG	p.R200G	ZFP37_uc011lwz.1_Missense_Mutation_p.R215G|ZFP37_uc011lxa.1_Missense_Mutation_p.R201G	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	200						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCAGATTTCCTTTTTACACAG	0.328													51	96					0	0	1	0	0
FKBP15	23307	broad.mit.edu	37	9	115950740	115950740	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:115950740G>A	uc004bgs.2	-	13	1323	c.1205C>T	c.(1204-1206)CCT>CTT	p.P402L	FKBP15_uc010muu.1_Missense_Mutation_p.P466L|FKBP15_uc011lxc.1_5'Flank|FKBP15_uc011lxd.1_Missense_Mutation_p.P334L|FKBP15_uc010mut.1_Missense_Mutation_p.P270L|FKBP15_uc004bgt.2_Missense_Mutation_p.P402L	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	402					endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						AGTCACCACAGGCTGCCCACC	0.567													8	77					0	0	1	0	0
SLC31A1	1317	broad.mit.edu	37	9	116018469	116018469	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116018469C>T	uc004bgu.2	+	2	227	c.41C>T	c.(40-42)TCC>TTC	p.S14F	FKBP15_uc010muu.1_Intron|SLC31A1_uc004bgv.3_Missense_Mutation_p.S14F	NM_001859	NP_001850	O15431	COPT1_HUMAN	solute carrier family 31 (copper transporters),	14	Extracellular (Potential).					integral to plasma membrane	copper ion transmembrane transporter activity				0						TATATGGACTCCAACAGTACC	0.438													20	60					0	0	1	0	0
PRPF4	9128	broad.mit.edu	37	9	116053831	116053831	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116053831C>T	uc004bgx.2	+	14	1510	c.1460C>T	c.(1459-1461)ACT>ATT	p.T487I	PRPF4_uc004bgy.2_Missense_Mutation_p.T486I	NM_004697	NP_004688	O43172	PRP4_HUMAN	PRP4 pre-mRNA processing factor 4 homolog	487	WD 6.					Cajal body|nuclear speck|spliceosomal complex|U4/U6 snRNP	protein binding			ovary(2)|pancreas(1)	3						CCGCTGAAGACTCTGGCTGGC	0.522													10	103					0	0	1	0	0
BSPRY	54836	broad.mit.edu	37	9	116132056	116132056	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116132056C>T	uc004bhg.3	+	6	891	c.843C>T	c.(841-843)TTC>TTT	p.F281F	BSPRY_uc010muw.2_3'UTR	NM_017688	NP_060158	Q5W0U4	BSPRY_HUMAN	B-box and SPRY domain containing	281	B30.2/SPRY.				calcium ion transport	cytoplasm|membrane	zinc ion binding			breast(1)	1						CCACCTCCTTCCAGAATGGGC	0.597													22	45					0	0	1	0	0
BSPRY	54836	broad.mit.edu	37	9	116132182	116132182	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116132182C>T	uc004bhg.3	+	6	1017	c.969C>T	c.(967-969)TTC>TTT	p.F323F	BSPRY_uc010muw.2_3'UTR	NM_017688	NP_060158	Q5W0U4	BSPRY_HUMAN	B-box and SPRY domain containing	323	B30.2/SPRY.				calcium ion transport	cytoplasm|membrane	zinc ion binding			breast(1)	1						ACAATGCCTTCTCCTGGGTCT	0.607													22	44					0	0	1	0	0
HDHD3	81932	broad.mit.edu	37	9	116136320	116136320	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116136320G>A	uc004bhi.1	-	2	1099	c.315C>T	c.(313-315)TTC>TTT	p.F105F	HDHD3_uc004bhj.2_Silent_p.F105F|HDHD3_uc004bhk.2_Silent_p.F105F	NM_031219	NP_112496	Q9BSH5	HDHD3_HUMAN	haloacid dehalogenase-like hydrolase domain	105							phosphoglycolate phosphatase activity|protein binding				0						AGGGGTGGCTGAAGTCTTTAT	0.607													32	115					0	0	1	0	0
ALAD	210	broad.mit.edu	37	9	116155791	116155791	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116155791G>A	uc011lxf.1	-	2	251	c.49C>T	c.(49-51)CGG>TGG	p.R17W	ALAD_uc011lxe.1_Missense_Mutation_p.R17W|ALAD_uc004bhl.3_5'UTR	NM_000031	NP_000022	P13716	HEM2_HUMAN	delta-aminolevulinic acid dehydratase	17					heme biosynthetic process|protein homooligomerization	cytosol	identical protein binding|lead ion binding|porphobilinogen synthase activity|zinc ion binding				0					Aminolevulinic acid(DB00855)	TGCCAGGCCCGAAGTAGTGGG	0.617													13	46					0	0	1	0	0
C9orf43	257169	broad.mit.edu	37	9	116175776	116175776	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116175776G>A	uc004bho.3	+	2	399	c.3G>A	c.(1-3)ATG>ATA	p.M1I	POLE3_uc011lxg.1_5'Flank|POLE3_uc004bhn.2_5'Flank|C9orf43_uc004bhp.2_Missense_Mutation_p.M1I	NM_152786	NP_689999	Q8TAL5	CI043_HUMAN	hypothetical protein LOC257169	1											0						TTCTAGCTATGGACTTGCCAG	0.498													17	27					0	0	1	0	0
RGS3	5998	broad.mit.edu	37	9	116224391	116224391	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116224391A>G	uc004bhq.2	+	4	534	c.325A>G	c.(325-327)AGC>GGC	p.S109G	RGS3_uc004bhr.2_5'Flank|RGS3_uc004bhs.2_5'Flank	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	109					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						GGAGTGGCTAAGCCCTGATAT	0.557													11	109					0	0	1	0	0
RGS3	5998	broad.mit.edu	37	9	116241795	116241795	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116241795C>T	uc004bhq.2	+	5	649	c.440C>T	c.(439-441)GCC>GTC	p.A147V	RGS3_uc004bhr.2_Missense_Mutation_p.A35V|RGS3_uc004bhs.2_Missense_Mutation_p.P2S	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	147	C2.				inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						TCCATTGATGCCCAGGACCGG	0.577													43	129					0	0	1	0	0
RGS3	5998	broad.mit.edu	37	9	116285273	116285273	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116285273G>A	uc004bhq.2	+	18	2031	c.1822G>A	c.(1822-1824)GAC>AAC	p.D608N	RGS3_uc004bhr.2_Missense_Mutation_p.D496N|RGS3_uc004bhs.2_Missense_Mutation_p.D498N|RGS3_uc004bht.2_Missense_Mutation_p.D327N|RGS3_uc010muy.2_Missense_Mutation_p.D327N|RGS3_uc004bhu.2_Missense_Mutation_p.D234N	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	608					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						TGGCCGCTGCGACGTCCTGAG	0.582													12	118					0	0	1	0	0
ZNF618	114991	broad.mit.edu	37	9	116779058	116779058	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116779058C>T	uc004bid.2	+	10	937	c.838C>T	c.(838-840)CCC>TCC	p.P280S	ZNF618_uc004bib.1_Missense_Mutation_p.P248S|ZNF618_uc004bic.2_Missense_Mutation_p.P268S|ZNF618_uc011lxi.1_Missense_Mutation_p.P248S|ZNF618_uc011lxj.1_Missense_Mutation_p.P248S	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	280					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTACACGCCCCCATCAGTGA	0.577													8	14					0	0	1	0	0
ZNF618	114991	broad.mit.edu	37	9	116811507	116811507	+	Missense_Mutation	SNP	C	T	T	rs141487834	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116811507C>T	uc004bid.2	+	15	2024	c.1925C>T	c.(1924-1926)TCG>TTG	p.S642L	ZNF618_uc004bic.2_Missense_Mutation_p.S549L|ZNF618_uc011lxi.1_Missense_Mutation_p.S609L|ZNF618_uc011lxj.1_Missense_Mutation_p.S610L|ZNF618_uc010mvb.2_Missense_Mutation_p.S232L	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	642					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCTTGAACTCGGTGGTGCAG	0.642													7	57					0	0	1	0	0
AMBP	259	broad.mit.edu	37	9	116837253	116837253	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116837253G>A	uc004bie.3	-	3	587	c.324C>T	c.(322-324)CTC>CTT	p.L108L	AMBP_uc011lxk.1_Silent_p.L49L|AMBP_uc010mvc.1_RNA	NM_001633	NP_001624	P02760	AMBP_HUMAN	alpha-1-microglobulin/bikunin preproprotein	108					cell adhesion|female pregnancy|heme catabolic process|interspecies interaction between organisms|negative regulation of immune response|negative regulation of JNK cascade|protein-chromophore linkage	extracellular region|plasma membrane	calcium channel inhibitor activity|calcium oxalate binding|heme binding|IgA binding|protein homodimerization activity|serine-type endopeptidase inhibitor activity|transporter activity			skin(1)	1					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	ATTTGTGATAGAGAAACTTCC	0.438													10	99					0	0	1	0	0
KIF12	113220	broad.mit.edu	37	9	116857374	116857374	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116857374G>A	uc004bif.2	-	8	872	c.634C>T	c.(634-636)CCT>TCT	p.P212S	KIF12_uc004big.2_RNA	NM_138424	NP_612433	Q96FN5	KIF12_HUMAN	kinesin family member 12	345					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						AGAGTCTCAGGAAGGCACTGG	0.647													10	47					0	0	1	0	0
KIF12	113220	broad.mit.edu	37	9	116858451	116858451	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116858451G>A	uc004bif.2	-	6	599	c.361C>T	c.(361-363)CCT>TCT	p.P121S	KIF12_uc004big.2_RNA	NM_138424	NP_612433	Q96FN5	KIF12_HUMAN	kinesin family member 12	254	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CCACCAACAGGGGGCTCCCCA	0.597													7	55					0	0	1	0	0
COL27A1	85301	broad.mit.edu	37	9	116930318	116930318	+	Silent	SNP	C	T	T	rs148339655		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116930318C>T	uc011lxl.1	+	3	483	c.483C>T	c.(481-483)CTC>CTT	p.L161L	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Silent_p.L11L	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	161	Laminin G-like.|TSP N-terminal.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						ACCTGGCCCTCGAGCTCCGAG	0.701													14	37					0	0	1	0	0
COL27A1	85301	broad.mit.edu	37	9	116930445	116930446	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116930445_116930446CC>TT	uc011lxl.1	+	3	610_611	c.610_611CC>TT	c.(610-612)CCG>TTG	p.P204L	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.P54L	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	204	Laminin G-like.|TSP N-terminal.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GAAGATGAACCCGCATGCAGTC	0.599													20	50					0	0	1	0	0
COL27A1	85301	broad.mit.edu	37	9	116931269	116931269	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116931269C>T	uc011lxl.1	+	3	1434	c.1434C>T	c.(1432-1434)ACC>ACT	p.T478T	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Silent_p.T328T	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	478	Pro-rich.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GCACCAGCACCCACAAACCTC	0.562													48	206					0	0	1	0	0
COL27A1	85301	broad.mit.edu	37	9	116931709	116931709	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:116931709G>A	uc011lxl.1	+	3	1874	c.1874G>A	c.(1873-1875)GGG>GAG	p.G625E	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.G475E	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	625	Pro-rich.|Collagen-like 1.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CTGCTGATGGGGCCTCCGGGA	0.632													11	68					0	0	1	0	0
COL27A1	85301	broad.mit.edu	37	9	117072882	117072882	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117072882C>T	uc011lxl.1	+	61	5490	c.5490C>T	c.(5488-5490)CCC>CCT	p.P1830P	COL27A1_uc004bii.2_RNA|COL27A1_uc011lxn.1_Silent_p.P145P	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1830	Fibrillar collagen NC1.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CCCAAGACCCCCAACAGCTGC	0.552													10	77					0	0	1	0	0
ORM1	5004	broad.mit.edu	37	9	117087345	117087345	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117087345G>A	uc004bik.3	+	5	564	c.453G>A	c.(451-453)ACG>ACA	p.T151T	ORM1_uc011lxo.1_Intron	NM_000607	NP_000598	P02763	A1AG1_HUMAN	orosomucoid 1 precursor	151					acute-phase response|regulation of immune system process|transport	extracellular space	protein binding				0		Myeloproliferative disorder(63;0.163)			Acenocoumarol(DB01418)|Alfentanil(DB00802)|Aprindine(DB01429)|Disopyramide(DB00280)|Penbutolol(DB01359)|Phenprocoumon(DB00946)|Quinidine(DB00908)|Tamsulosin(DB00706)	AGCCAGAGACGACCAAGGAGC	0.607													5	63					0	0	1	0	0
ORM1	5004	broad.mit.edu	37	9	117087420	117087420	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117087420C>T	uc004bik.3	+	5	639	c.528C>T	c.(526-528)ACC>ACT	p.T176T	ORM1_uc011lxo.1_Intron	NM_000607	NP_000598	P02763	A1AG1_HUMAN	orosomucoid 1 precursor	176					acute-phase response|regulation of immune system process|transport	extracellular space	protein binding				0		Myeloproliferative disorder(63;0.163)			Acenocoumarol(DB01418)|Alfentanil(DB00802)|Aprindine(DB01429)|Disopyramide(DB00280)|Penbutolol(DB01359)|Phenprocoumon(DB00946)|Quinidine(DB00908)|Tamsulosin(DB00706)	TCGTGTACACCGATTGGAAAA	0.577													21	52					0	0	1	0	0
ORM1	5004	broad.mit.edu	37	9	117094122	117094122	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117094122G>A	uc011lxo.1	+	5	564	c.453G>A	c.(451-453)ACG>ACA	p.T151T	ORM2_uc004bil.2_Silent_p.T151T	NM_000607	NP_000598	P02763	A1AG1_HUMAN	orosomucoid 1 precursor	151					acute-phase response|regulation of immune system process|transport	extracellular space	protein binding				0		Myeloproliferative disorder(63;0.163)			Acenocoumarol(DB01418)|Alfentanil(DB00802)|Aprindine(DB01429)|Disopyramide(DB00280)|Penbutolol(DB01359)|Phenprocoumon(DB00946)|Quinidine(DB00908)|Tamsulosin(DB00706)	AGCCAGAGACGACCAAGGAGC	0.607													13	32					0	0	1	0	0
AKNA	80709	broad.mit.edu	37	9	117103972	117103972	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117103972G>A	uc004biq.3	-	20	4043	c.3908C>T	c.(3907-3909)TCT>TTT	p.S1303F	AKNA_uc004bin.3_Missense_Mutation_p.S550F|AKNA_uc004bio.3_Missense_Mutation_p.S763F|AKNA_uc004bip.3_Missense_Mutation_p.S1222F|AKNA_uc004bir.3_Missense_Mutation_p.S1303F|AKNA_uc004bis.3_Missense_Mutation_p.S1303F|AKNA_uc010mve.2_Missense_Mutation_p.S1184F	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1303					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						GGGAGTTGAAGATGCTTTTCT	0.622													16	69					0	0	1	0	0
AKNA	80709	broad.mit.edu	37	9	117118261	117118261	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117118261G>A	uc004biq.3	-	13	3137	c.3002C>T	c.(3001-3003)CCT>CTT	p.P1001L	AKNA_uc004bin.3_Missense_Mutation_p.P248L|AKNA_uc004bio.3_Missense_Mutation_p.P461L|AKNA_uc004bip.3_Missense_Mutation_p.P920L|AKNA_uc004bir.3_Missense_Mutation_p.P1001L|AKNA_uc004bis.3_Missense_Mutation_p.P1001L|AKNA_uc010mve.2_Missense_Mutation_p.P882L|AKNA_uc004bit.1_5'Flank	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1001					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						CTGCCGGAGAGGCCCACTTGG	0.612													28	39					0	0	1	0	0
AKNA	80709	broad.mit.edu	37	9	117120290	117120290	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117120290G>A	uc004biq.3	-	11	2785	c.2650C>T	c.(2650-2652)CAA>TAA	p.Q884*	AKNA_uc004bin.3_Nonsense_Mutation_p.Q131*|AKNA_uc004bio.3_Nonsense_Mutation_p.Q344*|AKNA_uc004bip.3_Nonsense_Mutation_p.Q803*|AKNA_uc004bir.3_Nonsense_Mutation_p.Q884*|AKNA_uc004bis.3_Nonsense_Mutation_p.Q884*|AKNA_uc010mve.2_Nonsense_Mutation_p.Q765*	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	884					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						ATACTACTTTGGTGGGATGCT	0.647													19	57					0	0	1	0	0
AKNA	80709	broad.mit.edu	37	9	117122238	117122238	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117122238G>A	uc004biq.3	-	9	2364	c.2229C>T	c.(2227-2229)CCC>CCT	p.P743P	AKNA_uc004bin.3_5'UTR|AKNA_uc004bio.3_Silent_p.P203P|AKNA_uc004bip.3_Silent_p.P662P|AKNA_uc004bir.3_Silent_p.P743P|AKNA_uc004bis.3_Silent_p.P743P|AKNA_uc010mve.2_Silent_p.P624P|AKNA_uc004biu.1_Silent_p.P484P|AKNA_uc004biv.1_Silent_p.P743P	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	743					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						GTCGGGCCAGGGGGTCCTGTG	0.632													21	37					0	0	1	0	0
DFNB31	25861	broad.mit.edu	37	9	117188502	117188502	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117188502C>T	uc004biz.3	-	4	1804	c.1155G>A	c.(1153-1155)GCG>GCA	p.A385A	DFNB31_uc004bix.2_5'Flank|DFNB31_uc004biy.3_Silent_p.A2A|DFNB31_uc004bja.3_Silent_p.A385A	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	385					inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CTGCCGAGTTCGCCATGGTCT	0.632													15	22					0	0	1	0	0
TNFSF15	9966	broad.mit.edu	37	9	117552767	117552767	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117552767C>T	uc004bjh.2	-	4	837	c.721G>A	c.(721-723)GAA>AAA	p.E241K	TNFSF15_uc004bjg.2_Missense_Mutation_p.E182K	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	241	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						GTTTTATCTTCTTTTGTGTAA	0.428													33	121					0	0	1	0	0
TNFSF15	9966	broad.mit.edu	37	9	117552834	117552834	+	Silent	SNP	G	A	A	rs142354033		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117552834G>A	uc004bjh.2	-	4	770	c.654C>T	c.(652-654)TTC>TTT	p.F218F	TNFSF15_uc004bjg.2_Silent_p.F159F	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	218	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						CTTGCAAGGAGAACATGGCTC	0.488													16	82					0	0	1	0	0
TNFSF15	9966	broad.mit.edu	37	9	117553124	117553124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117553124C>T	uc004bjh.2	-	4	480	c.364G>A	c.(364-366)GAA>AAA	p.E122K	TNFSF15_uc004bjg.2_Missense_Mutation_p.E63K	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	122	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						AGGCCTAGTTCATGTTCCCAG	0.448													21	66					0	0	1	0	0
TNFSF15	9966	broad.mit.edu	37	9	117554722	117554722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117554722C>T	uc004bjh.2	-	3	382	c.266G>A	c.(265-267)AGA>AAA	p.R89K	TNFSF15_uc004bjg.2_Missense_Mutation_p.R30K	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	89	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						TCCGTCTGCTCTAAGAGGTGC	0.488													14	50					0	0	1	0	0
TNFSF8	944	broad.mit.edu	37	9	117666367	117666367	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117666367C>T	uc004bji.1	-	4	736	c.549G>A	c.(547-549)ACG>ACA	p.T183T		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	183	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						ATACGTGTTTCGTTTGCATTC	0.418													57	107					0	0	1	0	0
TNFSF8	944	broad.mit.edu	37	9	117666496	117666496	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117666496G>A	uc004bji.1	-	4	607	c.420C>T	c.(418-420)TTC>TTT	p.F140F		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	140	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						GGCAAATGATGAAGTACAAAC	0.413													66	101					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117788850	117788850	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117788850G>A	uc004bjj.3	-	26	6656	c.6294C>T	c.(6292-6294)CGC>CGT	p.R2098R	TNC_uc010mvf.2_Silent_p.R1825R	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	2098	Fibrinogen C-terminal.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TCAGCTTGTAGCGAGTCTTGG	0.562													17	50					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117791663	117791663	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117791663C>T	uc004bjj.3	-	25	6507	c.6145G>A	c.(6145-6147)GAC>AAC	p.D2049N	TNC_uc010mvf.2_Missense_Mutation_p.D1776N	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	2049	Fibrinogen C-terminal.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TCTCTGCGGTCCCCAAATCCA	0.468													25	88					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117803253	117803253	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117803253C>T	uc004bjj.3	-	19	5721	c.5359G>A	c.(5359-5361)GAA>AAA	p.E1787K	TNC_uc010mvf.2_Missense_Mutation_p.E1514K	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1787	Fibronectin type-III 13.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GGTTCACTTTCCTCAAAGCCC	0.498													29	80					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117810748	117810748	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117810748G>A	uc004bjj.3	-	16	5005	c.4643C>T	c.(4642-4644)TCC>TTC	p.S1548F	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1548	Fibronectin type-III 11.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TGCCATCCAGGAAACTGTGAA	0.502													9	40					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117825450	117825450	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117825450C>T	uc004bjj.3	-	13	4141	c.3779G>A	c.(3778-3780)GGA>GAA	p.G1260E	TNC_uc010mvf.2_Missense_Mutation_p.G1260E	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1260	Fibronectin type-III 8.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TGTGAGGTTTCCCATATCTGG	0.493													14	33					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117849481	117849481	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117849481C>T	uc004bjj.3	-	3	891	c.529G>A	c.(529-531)GAA>AAA	p.E177K	TNC_uc010mvf.2_Missense_Mutation_p.E177K	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	177	EGF-like 1; incomplete.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CAGCCAGGTTCGCAGACACAG	0.582													26	79					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117853292	117853292	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:117853292C>T	uc004bjj.3	-	2	368	c.6G>A	c.(4-6)GGG>GGA	p.G2G	TNC_uc010mvf.2_Silent_p.G2G	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	2					cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GAGTCATGGCCCCCATGGTGG	0.557													21	18					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118969759	118969759	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:118969759G>A	uc004bjn.2	+	3	1884	c.1503G>A	c.(1501-1503)CTG>CTA	p.L501L	PAPPA_uc011lxp.1_Silent_p.L294L|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	501	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TTAATGAGCTGAAGAACATTC	0.398													22	72					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118997857	118997858	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:118997857_118997858CC>TT	uc004bjn.2	+	7	3054_3055	c.2673_2674CC>TT	c.(2671-2676)GACCCT>GATTCT	p.P892S	PAPPA_uc011lxp.1_Missense_Mutation_p.P587S|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	892					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGGTCCGGGACCCTCCTCTCCA	0.505													10	91					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119033623	119033623	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119033623G>A	uc004bjn.2	+	9	3262	c.2881G>A	c.(2881-2883)GAC>AAC	p.D961N	PAPPA_uc011lxp.1_Missense_Mutation_p.D656N|PAPPA_uc011lxq.1_Missense_Mutation_p.D336N	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	961					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGAACAATGCGACGACATGAA	0.388													48	122					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119097170	119097170	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119097170C>T	uc004bjn.2	+	13	3809	c.3428C>T	c.(3427-3429)CCC>CTC	p.P1143L	PAPPA_uc011lxp.1_Missense_Mutation_p.P838L|PAPPA_uc011lxq.1_Missense_Mutation_p.P518L	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1143					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AGGAACAATCCCCTGATTATC	0.632													12	52					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119106955	119106955	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119106955C>T	uc004bjn.2	+	14	4126	c.3745C>T	c.(3745-3747)CAG>TAG	p.Q1249*	PAPPA_uc011lxq.1_Nonsense_Mutation_p.Q624*	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1249	Sushi 1.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CTACGTGCTCCAGATACGGCG	0.582													7	47					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119115959	119115959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119115959C>T	uc004bjn.2	+	17	4615	c.4234C>T	c.(4234-4236)CCT>TCT	p.P1412S	PAPPA_uc011lxq.1_Missense_Mutation_p.P787S	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1412	Sushi 3.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AGCTTGTGTTCCTGTGACCTG	0.507													44	76					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119124924	119124924	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119124924C>T	uc004bjn.2	+	18	4782	c.4401C>T	c.(4399-4401)TCC>TCT	p.S1467S	PAPPA_uc011lxq.1_Silent_p.S842S	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1467	Sushi 4.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GGAACGGCTCCTTCCATGTCT	0.532													26	67					0	0	1	0	0
TRIM32	22954	broad.mit.edu	37	9	119461243	119461243	+	Missense_Mutation	SNP	C	A	A	rs3747835	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119461243C>A	uc004bjx.2	+	2	1380	c.1222C>A	c.(1222-1224)CGC>AGC	p.R408S	ASTN2_uc004bjr.1_Intron|ASTN2_uc004bjs.1_Intron|ASTN2_uc004bjt.1_Intron|TRIM32_uc004bjw.2_Missense_Mutation_p.R408S	NM_001099679	NP_001093149	Q13049	TRI32_HUMAN	tripartite motif-containing 32	408					fat cell differentiation|innate immune response|negative regulation of apoptosis|negative regulation of fibroblast proliferation|positive regulation of cell cycle|positive regulation of cell growth|positive regulation of cell migration|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein catabolic process|positive regulation of proteolysis|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to tumor necrosis factor|response to UV	nucleus	myosin binding|protein self-association|RNA binding|Tat protein binding|transcription coactivator activity|translation initiation factor binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(2)|kidney(1)	3						GAAGGAAATCCGCCGCAGCCC	0.512									Bardet-Biedl_syndrome				51	119					4.78724e-31	4.81626e-31	1	1	0
ASTN2	23245	broad.mit.edu	37	9	119737566	119737566	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119737566G>A	uc004bjs.1	-	10	1911	c.1810C>T	c.(1810-1812)CCG>TCG	p.P604S	ASTN2_uc004bjr.1_Missense_Mutation_p.P600S|ASTN2_uc004bjt.1_Missense_Mutation_p.P553S	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	604	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TCCACAGGCGGAACCACAAAG	0.552													9	65					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	119737589	119737589	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119737589G>A	uc004bjs.1	-	10	1888	c.1787C>T	c.(1786-1788)CCT>CTT	p.P596L	ASTN2_uc004bjr.1_Missense_Mutation_p.P592L|ASTN2_uc004bjt.1_Missense_Mutation_p.P545L	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	596	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TTTGCTGACAGGAAGCCAGAG	0.552													15	47					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	119770441	119770441	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119770441G>A	uc004bjs.1	-	7	1622	c.1521C>T	c.(1519-1521)TCC>TCT	p.S507S	ASTN2_uc004bjr.1_Silent_p.S507S|ASTN2_uc004bjt.1_Silent_p.S456S	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	507	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TCACCCATGGGGAGGTGGCAT	0.572													28	50					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	119770494	119770494	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:119770494C>T	uc004bjs.1	-	7	1569	c.1468G>A	c.(1468-1470)GAC>AAC	p.D490N	ASTN2_uc004bjr.1_Missense_Mutation_p.D490N|ASTN2_uc004bjt.1_Missense_Mutation_p.D439N	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	490	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TTTAACCAGTCGGAGATGTCC	0.507													15	50					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	120053765	120053765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:120053765G>A	uc004bjs.1	-	2	571	c.470C>T	c.(469-471)TCG>TTG	p.S157L	ASTN2_uc004bjr.1_Missense_Mutation_p.S157L|ASTN2_uc004bjt.1_Missense_Mutation_p.S157L	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	157	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GTGCACCAGCGAGATGTCCGC	0.627													11	38					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120474738	120474738	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:120474738G>A	uc004bjz.2	+	3	623	c.332G>A	c.(331-333)GGA>GAA	p.G111E	TLR4_uc004bka.2_Missense_Mutation_p.G71E|TLR4_uc004bkb.2_5'UTR	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	111	LRR 3.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						ATATTGACAGGAAACCCCATC	0.433													18	48					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120474838	120474838	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:120474838C>T	uc004bjz.2	+	3	723	c.432C>T	c.(430-432)TTC>TTT	p.F144F	TLR4_uc004bka.2_Silent_p.F104F|TLR4_uc004bkb.2_5'UTR	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	144	LRR 4.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TAGAGAACTTCCCCATTGGAC	0.408													30	74					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120475396	120475396	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:120475396C>T	uc004bjz.2	+	3	1281	c.990C>T	c.(988-990)TTC>TTT	p.F330F	TLR4_uc004bka.2_Silent_p.F290F|TLR4_uc004bkb.2_Silent_p.F130F	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	330	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						CTTATAATTTCGGATGGCAAC	0.323													20	77					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120475717	120475717	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:120475717G>A	uc004bjz.2	+	3	1602	c.1311G>A	c.(1309-1311)ATG>ATA	p.M437I	TLR4_uc004bka.2_Missense_Mutation_p.M397I|TLR4_uc004bkb.2_Missense_Mutation_p.M237I	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	437	LRR 13.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TGAAACAAATGAGTGAGTTTT	0.378													20	77					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120475910	120475910	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:120475910G>A	uc004bjz.2	+	3	1795	c.1504G>A	c.(1504-1506)GAC>AAC	p.D502N	TLR4_uc004bka.2_Missense_Mutation_p.D462N|TLR4_uc004bkb.2_Missense_Mutation_p.D302N	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	502	LRR 16.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GACCTTCCTGGACCTCTCTCA	0.438													27	54					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120476041	120476041	+	Silent	SNP	C	T	T	rs140976297		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:120476041C>T	uc004bjz.2	+	3	1926	c.1635C>T	c.(1633-1635)TCC>TCT	p.S545S	TLR4_uc004bka.2_Silent_p.S505S|TLR4_uc004bkb.2_Silent_p.S345S	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	545	LRR 18.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GTCTGAACTCCCTCCAGGTTC	0.378													11	55					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120476262	120476262	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:120476262C>T	uc004bjz.2	+	3	2147	c.1856C>T	c.(1855-1857)CCT>CTT	p.P619L	TLR4_uc004bka.2_Missense_Mutation_p.P579L|TLR4_uc004bkb.2_Missense_Mutation_p.P419L	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	619	LRRCT.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						CAGGGCATGCCTGTGCTGAGT	0.468													8	30					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929478	121929478	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:121929478G>A	uc004bkc.2	-	8	2626	c.2170C>T	c.(2170-2172)CTG>TTG	p.L724L		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	724					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CGGTGTTTCAGCATACAGGAG	0.552													61	114					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929783	121929783	+	Missense_Mutation	SNP	C	T	T	rs145920249		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:121929783C>T	uc004bkc.2	-	8	2321	c.1865G>A	c.(1864-1866)CGG>CAG	p.R622Q		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	622					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TAGCCGAGTCCGACTACGTAG	0.532													62	103					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929812	121929812	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:121929812G>A	uc004bkc.2	-	8	2292	c.1836C>T	c.(1834-1836)TTC>TTT	p.F612F		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	612					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GGACCGTCTCGAAAAATGTTT	0.552													42	86					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929987	121929987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:121929987C>T	uc004bkc.2	-	8	2117	c.1661G>A	c.(1660-1662)AGC>AAC	p.S554N		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	554					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GTCCAGGCTGCTGTTGCGCAT	0.567													10	34					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121971092	121971092	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:121971092C>T	uc004bkc.2	-	7	1506	c.1050G>A	c.(1048-1050)GAG>GAA	p.E350E		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	350					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GTCTCTGTGCCTCCGTGGCAC	0.577													17	48					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121976336	121976336	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:121976336C>T	uc004bkc.2	-	6	1239	c.783G>A	c.(781-783)CAG>CAA	p.Q261Q	DBC1_uc004bkd.2_Silent_p.Q261Q	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	261					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						ACTGGCTGTTCTGGCACAGGT	0.537													16	71					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	122075601	122075601	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:122075601G>A	uc004bkc.2	-	2	489	c.33C>T	c.(31-33)TTC>TTT	p.F11F	DBC1_uc004bkd.2_Silent_p.F11F	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	11					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						ATATAAACAGGAAGTAGAGGA	0.458													15	54					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	122075625	122075625	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:122075625C>T	uc004bkc.2	-	2	465	c.9G>A	c.(7-9)TGG>TGA	p.W3*	DBC1_uc004bkd.2_Nonsense_Mutation_p.W3*	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	3					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CAACAAACCTCCAGTTCATGC	0.418													10	41					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	122075631	122075631	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:122075631C>T	uc004bkc.2	-	2	459	c.3G>A	c.(1-3)ATG>ATA	p.M1I	DBC1_uc004bkd.2_Missense_Mutation_p.M1I	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	1					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						ACCTCCAGTTCATGCTTTTCT	0.398													10	38					0	0	1	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123163094	123163094	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123163094C>T	uc004bkf.2	-	35	5558	c.5377G>A	c.(5377-5379)GCC>ACC	p.A1793T	CDK5RAP2_uc010mvi.2_Missense_Mutation_p.A802T|CDK5RAP2_uc004bke.2_Missense_Mutation_p.A1078T|CDK5RAP2_uc004bkg.2_Missense_Mutation_p.A1714T|CDK5RAP2_uc011lxw.1_Missense_Mutation_p.A1058T|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_Missense_Mutation_p.A1058T|CDK5RAP2_uc011lya.1_Missense_Mutation_p.A1058T|CDK5RAP2_uc004bkh.1_Missense_Mutation_p.A1563T	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	1793	Interaction with PCNT and AKAP9.				brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						CGCCTGTAGGCCTCTTCCAGG	0.587													15	57					0	0	1	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123215752	123215752	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123215752G>A	uc004bkf.2	-	21	2956	c.2775C>T	c.(2773-2775)CTC>CTT	p.L925L	CDK5RAP2_uc004bke.2_Silent_p.L210L|CDK5RAP2_uc004bkg.2_Silent_p.L925L|CDK5RAP2_uc011lxw.1_Silent_p.L190L|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_Silent_p.L190L|CDK5RAP2_uc011lya.1_Silent_p.L190L|CDK5RAP2_uc004bkh.1_Intron|CDK5RAP2_uc004bki.2_Silent_p.L692L	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	925					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						TAATACCAGGGAGGGAAAGGA	0.453													36	90					0	0	1	0	0
MEGF9	1955	broad.mit.edu	37	9	123476144	123476144	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123476144G>A	uc004bkj.1	-	1	469	c.469C>T	c.(469-471)CCG>TCG	p.P157S	MEGF9_uc011lyb.1_Missense_Mutation_p.P157S|MEGF9_uc004bkk.3_Missense_Mutation_p.P157S	NM_001080497	NP_001073966	Q9H1U4	MEGF9_HUMAN	multiple EGF-like-domains 9	165	Extracellular (Potential).|Pro-rich.					integral to membrane	calcium ion binding				0						GTGGGCGCCGGTACGGTGGTC	0.726													15	26					0	0	1	0	0
FBXW2	26190	broad.mit.edu	37	9	123550268	123550268	+	Missense_Mutation	SNP	A	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123550268A>C	uc004bkl.1	-	3	430	c.269T>G	c.(268-270)GTG>GGG	p.V90G	FBXW2_uc011lyc.1_5'UTR|FBXW2_uc004bkn.2_Missense_Mutation_p.V122G|FBXW2_uc004bkm.1_Missense_Mutation_p.V90G|FBXW2_uc010mvj.1_Missense_Mutation_p.V90G	NM_012164	NP_036296	Q9UKT8	FBXW2_HUMAN	F-box and WD repeat domain containing 2	90	F-box.				proteolysis		protein binding|ubiquitin-protein ligase activity			urinary_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						GGCACTTATCACCTTATTCCA	0.443													37	108					0	0	1	0	0
TRAF1	7185	broad.mit.edu	37	9	123667431	123667431	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123667431C>T	uc004bku.1	-	8	1690	c.1118G>A	c.(1117-1119)AGG>AAG	p.R373K	TRAF1_uc011lyg.1_Missense_Mutation_p.R251K|TRAF1_uc010mvl.1_Missense_Mutation_p.R373K	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	373	MATH.				apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						ACTCTGGGGCCTCTGGAAGGA	0.587													13	24					0	0	1	0	0
TRAF1	7185	broad.mit.edu	37	9	123671621	123671621	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123671621G>A	uc004bku.1	-	7	1491	c.919C>T	c.(919-921)CTG>TTG	p.L307L	TRAF1_uc011lyg.1_Silent_p.L185L|TRAF1_uc010mvl.1_Silent_p.L307L	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	307	MATH.				apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						TACAGCCGCAGGCACAACTTG	0.478													26	198					0	0	1	0	0
C5	727	broad.mit.edu	37	9	123725021	123725021	+	Missense_Mutation	SNP	G	A	A	rs138933092		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123725021G>A	uc004bkv.2	-	36	4462	c.4432C>T	c.(4432-4434)CGG>TGG	p.R1478W		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	1478					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	TCAAATATCCGGAATCGTACA	0.373													9	136					0	0	1	0	0
C5	727	broad.mit.edu	37	9	123759877	123759877	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123759877G>A	uc004bkv.2	-	21	2768	c.2738C>T	c.(2737-2739)TCA>TTA	p.S913L		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	913					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	AGTCTCCAGTGAAAAATTGAT	0.393													14	71					0	0	1	0	0
C5	727	broad.mit.edu	37	9	123780052	123780052	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123780052G>A	uc004bkv.2	-	13	1615	c.1585C>T	c.(1585-1587)CCA>TCA	p.P529S	C5_uc010mvm.1_Missense_Mutation_p.P529S|C5_uc010mvn.1_Missense_Mutation_p.P529S	NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	529					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	TGTGTTACTGGAATGTTTATA	0.388													20	60					0	0	1	0	0
CEP110	11064	broad.mit.edu	37	9	123888069	123888069	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123888069C>T	uc004bkx.1	+	12	1911	c.1880C>T	c.(1879-1881)ACC>ATC	p.T627I	CEP110_uc004bky.1_Missense_Mutation_p.T231I|CEP110_uc004bkz.1_Missense_Mutation_p.T75I|CEP110_uc004bla.1_Missense_Mutation_p.T75I	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	627	Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						TACCTGGGGACCATTAAAGGC	0.478													29	102					0	0	1	0	0
CEP110	11064	broad.mit.edu	37	9	123929839	123929839	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123929839G>A	uc004bkx.1	+	35	5759	c.5728G>A	c.(5728-5730)GAA>AAA	p.E1910K	CEP110_uc004blb.1_Missense_Mutation_p.E579K|CEP110_uc010mvp.1_5'UTR	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1910	Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						GGACATCAGTGAATGGGCAAA	0.433													18	39					0	0	1	0	0
CEP110	11064	broad.mit.edu	37	9	123932070	123932070	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:123932070G>A	uc004bkx.1	+	37	6283	c.6252G>A	c.(6250-6252)CGG>CGA	p.R2084R	CEP110_uc004blb.1_Silent_p.R753R|CEP110_uc010mvp.1_Silent_p.R34R	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	2084	Required for centrosome localization.|Sufficient for interaction with HOOK2.|Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						AGATCCAGCGGAGCCAGCTGG	0.468													28	69					0	0	1	0	0
GSN	2934	broad.mit.edu	37	9	124080952	124080952	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:124080952C>T	uc004blf.1	+	9	1199	c.1138C>T	c.(1138-1140)CTT>TTT	p.L380F	GSN_uc004bld.1_Missense_Mutation_p.L329F|GSN_uc010mvq.1_Missense_Mutation_p.L340F|GSN_uc010mvr.1_Missense_Mutation_p.L340F|GSN_uc010mvu.1_Missense_Mutation_p.L329F|GSN_uc010mvt.1_Missense_Mutation_p.L329F|GSN_uc010mvs.1_Missense_Mutation_p.L329F|GSN_uc004ble.1_Missense_Mutation_p.L329F|GSN_uc010mvv.1_Missense_Mutation_p.L329F|GSN_uc011lyh.1_Missense_Mutation_p.L346F|GSN_uc011lyi.1_Missense_Mutation_p.L329F|GSN_uc011lyj.1_Missense_Mutation_p.L353F|GSN_uc004blg.1_Missense_Mutation_p.L111F	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	380					actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						GGTCTCGGTCCTTCCTGAGGG	0.632													18	51					0	0	1	0	0
DAB2IP	153090	broad.mit.edu	37	9	124519294	124519294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:124519294C>T	uc004bln.2	+	4	350	c.281C>T	c.(280-282)TCC>TTC	p.S94F	DAB2IP_uc004blo.2_5'UTR	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	122	PH.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						CACCCCAGGTCCCATCTGATG	0.667													19	55					0	0	1	0	0
DAB2IP	153090	broad.mit.edu	37	9	124528805	124528805	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:124528805C>T	uc004bln.2	+	9	1478	c.1409C>T	c.(1408-1410)GCC>GTC	p.A470V	DAB2IP_uc004blo.2_Missense_Mutation_p.A374V|DAB2IP_uc004blp.2_5'Flank	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	498	Ras-GAP.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						GAGGTGTTTGCCTCGTGGAGG	0.627													16	32					0	0	1	0	0
DAB2IP	153090	broad.mit.edu	37	9	124528957	124528957	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:124528957C>T	uc004bln.2	+	9	1630	c.1561C>T	c.(1561-1563)CGC>TGC	p.R521C	DAB2IP_uc004blo.2_Missense_Mutation_p.R425C|DAB2IP_uc004blp.2_5'Flank	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	549	Ras-GAP.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						CCGCACTGCCCGCACCCTCAC	0.627													25	184					0	0	1	0	0
TTLL11	158135	broad.mit.edu	37	9	124752002	124752002	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:124752002G>A	uc004blt.1	-	4	1199	c.1011C>T	c.(1009-1011)ATC>ATT	p.I337I	TTLL11_uc011lyl.1_Silent_p.I337I|TTLL11_uc004blr.2_RNA|TTLL11_uc011lym.1_Silent_p.I14I|TTLL11_uc004blu.1_3'UTR	NM_194252	NP_919228	Q8NHH1	TTL11_HUMAN	tubulin tyrosine ligase-like family, member 11	337	TTL.				protein modification process	cilium|microtubule basal body	tubulin-tyrosine ligase activity				0						CAGGTTTCACGATAAAAGTGG	0.448													44	172					0	0	1	0	0
MORN5	254956	broad.mit.edu	37	9	124929162	124929162	+	Missense_Mutation	SNP	G	A	A	rs138145529		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:124929162G>A	uc004blw.2	+	2	225	c.163G>A	c.(163-165)GAC>AAC	p.D55N	MORN5_uc011lyn.1_Missense_Mutation_p.D55N|MORN5_uc011lyo.1_Missense_Mutation_p.D55N	NM_198469	NP_940871	Q5VZ52	MORN5_HUMAN	MORN repeat containing 5	55	MORN 3.										0						AAGCCAATACGACGCCATTTG	0.537													5	34					0	0	1	0	0
LHX6	26468	broad.mit.edu	37	9	124979518	124979518	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:124979518C>T	uc010mvw.2	-	4	533	c.424G>A	c.(424-426)GAC>AAC	p.D142N	LHX6_uc004blx.3_Missense_Mutation_p.D171N|LHX6_uc004bly.3_Missense_Mutation_p.D171N	NM_014368	NP_055183	Q9UPM6	LHX6_HUMAN	LIM homeobox protein 6 isoform 1	142	LIM zinc-binding 2.|Required for interaction with LBD1 (By similarity).				cell maturation|cerebral cortex GABAergic interneuron migration|cerebral cortex radially oriented cell migration|cerebral cortex tangential migration	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CGCACCCAGTCGCTGGCGTAG	0.662													19	24					0	0	1	0	0
MRRF	92399	broad.mit.edu	37	9	125042722	125042722	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125042722C>T	uc004bmb.2	+	3	300	c.185C>T	c.(184-186)GCC>GTC	p.A62V	MRRF_uc004bmc.2_Missense_Mutation_p.A62V|MRRF_uc011lyq.1_Missense_Mutation_p.A83V|MRRF_uc010mvz.1_RNA|MRRF_uc010mwa.2_Missense_Mutation_p.A62V|MRRF_uc011lyr.1_Intron|MRRF_uc004bmd.2_Missense_Mutation_p.A62V|MRRF_uc004bme.2_RNA	NM_138777	NP_620132	Q96E11	RRFM_HUMAN	mitochondrial ribosome recycling factor isoform	62					ribosome disassembly|translation	mitochondrion	sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						CACTTTTTAGCCAAAGGGAAA	0.383													18	58					0	0	1	0	0
PTGS1	5742	broad.mit.edu	37	9	125140818	125140818	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125140818C>T	uc004bmg.1	+	4	453	c.318C>T	c.(316-318)TTC>TTT	p.F106F	PTGS1_uc011lys.1_Silent_p.F81F|PTGS1_uc010mwb.1_5'UTR|PTGS1_uc004bmf.1_Silent_p.F106F|PTGS1_uc004bmh.1_5'UTR|PTGS1_uc011lyt.1_5'UTR	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	106					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	ATGCCACCTTCATCCGAGAGA	0.602													15	54					0	0	1	0	0
PTGS1	5742	broad.mit.edu	37	9	125141072	125141072	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125141072C>T	uc004bmg.1	+	5	506	c.371C>T	c.(370-372)CCC>CTC	p.P124L	PTGS1_uc011lys.1_Missense_Mutation_p.P99L|PTGS1_uc010mwb.1_Missense_Mutation_p.P15L|PTGS1_uc004bmf.1_Missense_Mutation_p.P124L|PTGS1_uc004bmh.1_Missense_Mutation_p.P15L|PTGS1_uc011lyt.1_Missense_Mutation_p.P15L	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	124					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	AACCTTATCCCCAGTCCCCCC	0.537													13	58					0	0	1	0	0
PTGS1	5742	broad.mit.edu	37	9	125148802	125148802	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125148802G>A	uc004bmg.1	+	9	1222	c.1087G>A	c.(1087-1089)GAG>AAG	p.E363K	PTGS1_uc011lys.1_Missense_Mutation_p.E338K|PTGS1_uc010mwb.1_Missense_Mutation_p.E254K|PTGS1_uc004bmf.1_Missense_Mutation_p.E363K|PTGS1_uc004bmh.1_Missense_Mutation_p.E254K|PTGS1_uc011lyt.1_Missense_Mutation_p.E254K	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	363					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	ATTTGACCCAGAGCTGCTGTT	0.537													40	142					0	0	1	0	0
PTGS1	5742	broad.mit.edu	37	9	125148925	125148925	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125148925G>A	uc004bmg.1	+	9	1345	c.1210G>A	c.(1210-1212)GAG>AAG	p.E404K	PTGS1_uc011lys.1_Intron|PTGS1_uc010mwb.1_Intron|PTGS1_uc004bmf.1_Intron|PTGS1_uc004bmh.1_Missense_Mutation_p.E295K|PTGS1_uc011lyt.1_Missense_Mutation_p.E295K	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	404					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	GTACAGCTACGAGCAGTTCTT	0.557													26	106					0	0	1	0	0
OR1J1	347168	broad.mit.edu	37	9	125239244	125239244	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125239244C>T	uc011lyu.1	-	1	962	c.962G>A	c.(961-963)GGA>GAA	p.G321E	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	321	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						gcctcagcctcccaaagtgtt	0.1													13	33					0	0	1	0	0
OR1J1	347168	broad.mit.edu	37	9	125239414	125239414	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125239414G>A	uc011lyu.1	-	1	792	c.792C>T	c.(790-792)TCC>TCT	p.S264S	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGGTGTTGCTGGATGGGGGAA	0.418													48	98					0	0	1	0	0
OR1J1	347168	broad.mit.edu	37	9	125240122	125240122	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125240122G>A	uc011lyu.1	-	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GGAACAGGGCGAAGAACACGG	0.587													63	124					0	0	1	0	0
OR1J2	26740	broad.mit.edu	37	9	125273455	125273455	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125273455C>T	uc004bmj.1	+	4	1230	c.375C>T	c.(373-375)GCC>GCT	p.A125A	OR1J2_uc011lyv.1_Silent_p.A125A	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	125	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						GATATGTTGCCATATGTCACC	0.423													19	84					0	0	1	0	0
OR1J4	26219	broad.mit.edu	37	9	125281491	125281491	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125281491G>A	uc011lyw.1	+	1	72	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGAGCAGCAGGCTGTGTTCT	0.557													28	128					0	0	1	0	0
OR1J4	26219	broad.mit.edu	37	9	125281525	125281525	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125281525C>T	uc011lyw.1	+	1	106	c.106C>T	c.(106-108)CTG>TTG	p.L36L		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGGCATGTACCTGATCACGGT	0.572													32	167					0	0	1	0	0
OR1J4	26219	broad.mit.edu	37	9	125282013	125282013	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125282013C>T	uc011lyw.1	+	1	594	c.594C>T	c.(592-594)GTC>GTT	p.V198V		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	198	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGAGCTGGTCATTTTCACAG	0.473													30	57					0	0	1	0	0
OR1J4	26219	broad.mit.edu	37	9	125282298	125282298	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125282298G>A	uc011lyw.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATAGCCTAAGGAACAGGGACA	0.458													23	52					0	0	1	0	0
OR1N1	138883	broad.mit.edu	37	9	125288790	125288790	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125288790G>A	uc004bmn.1	-	1	783	c.783C>T	c.(781-783)CCC>CCT	p.P261P		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						AGGCAATGGAGGGAGGACACA	0.527													9	58					0	0	1	0	0
OR1N1	138883	broad.mit.edu	37	9	125288811	125288811	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125288811G>A	uc004bmn.1	-	1	762	c.762C>T	c.(760-762)TTC>TTT	p.F254F		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						GGTAGGCACTGAAGAGGGTCC	0.542													25	40					0	0	1	0	0
OR1N1	138883	broad.mit.edu	37	9	125289062	125289062	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125289062C>T	uc004bmn.1	-	1	511	c.511G>A	c.(511-513)GAA>AAA	p.E171K		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						TGAGCAATTTCCCCAGTCACA	0.502													9	35					0	0	1	0	0
OR1N2	138882	broad.mit.edu	37	9	125315672	125315672	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125315672C>T	uc011lyx.1	+	1	224	c.224C>T	c.(223-225)CCC>CTC	p.P75L		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						CTCCATACTCCCATGTACTTC	0.507													29	203					0	0	1	0	0
OR1L8	138881	broad.mit.edu	37	9	125330004	125330004	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125330004G>A	uc004bmp.1	-	1	753	c.753C>T	c.(751-753)CTC>CTT	p.L251L		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						TTCCATAAAAGAGCGTCACCA	0.463													10	35					0	0	1	0	0
OR1L8	138881	broad.mit.edu	37	9	125330444	125330444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125330444G>A	uc004bmp.1	-	1	313	c.313C>T	c.(313-315)CTC>TTC	p.L105F		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						AAGGCATAGAGAAAATACATC	0.488													28	52					0	0	1	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377471	125377471	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125377471C>T	uc011lyy.1	+	1	455	c.455C>T	c.(454-456)TCC>TTC	p.S152F		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CATGCTCTCTCCCACCTTCAT	0.488													35	96					0	0	1	0	0
OR1B1	347169	broad.mit.edu	37	9	125391169	125391169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125391169G>A	uc011lyz.1	-	1	646	c.646C>T	c.(646-648)CCC>TCC	p.P216S		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGGCACAGGGGCCCAGCATA	0.537													8	62					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125424037	125424037	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125424037C>T	uc011lza.1	+	1	193	c.193C>T	c.(193-195)CTT>TTT	p.L65F		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	65	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ATTCATCCTCCTTGGACTCTC	0.448													25	69					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125424093	125424093	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125424093C>T	uc011lza.1	+	1	249	c.249C>T	c.(247-249)CCC>CCT	p.P83P		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	83	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TGTTCCTCCCCATCTACCTTA	0.493													9	74					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125424154	125424154	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125424154C>T	uc011lza.1	+	1	310	c.310C>T	c.(310-312)CGT>TGT	p.R104C		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	104	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CTCAGACACTCGTCTCCAGAC	0.468													45	95					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125424692	125424692	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125424692G>A	uc011lza.1	+	1	848	c.848G>A	c.(847-849)GGA>GAA	p.G283E		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	283	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TCAGCTGCTGGAAAGCGTAAA	0.428													77	160					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125424752	125424752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125424752G>A	uc011lza.1	+	1	908	c.908G>A	c.(907-909)GGA>GAA	p.G303E		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	303	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CTGTTTTATGGAAGCATTAGC	0.423													55	166					0	0	1	0	0
OR1L3	26735	broad.mit.edu	37	9	125437455	125437455	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125437455G>A	uc011lzb.1	+	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATTCTCTTGGGACTCTCCTCT	0.423													37	118					0	0	1	0	0
OR1L3	26735	broad.mit.edu	37	9	125437581	125437581	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125437581C>T	uc011lzb.1	+	1	173	c.173C>T	c.(172-174)CCT>CTT	p.P58L		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTTCAAAACCCTATGTATTTT	0.413													44	184					0	0	1	0	0
OR1L3	26735	broad.mit.edu	37	9	125437994	125437994	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125437994G>A	uc011lzb.1	+	1	586	c.586G>A	c.(586-588)GAA>AAA	p.E196K		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTTTGTCAATGAAATTGTGGC	0.433													56	197					0	0	1	0	0
OR1L4	254973	broad.mit.edu	37	9	125486458	125486458	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125486458C>T	uc004bmu.1	+	1	190	c.190C>T	c.(190-192)CTC>TTC	p.L64F		NM_001005235	NP_001005235	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTACTTTTTTCTCAGCAACTT	0.453													27	74					0	0	1	0	0
OR1L4	254973	broad.mit.edu	37	9	125486595	125486595	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125486595G>A	uc004bmu.1	+	1	327	c.327G>A	c.(325-327)GGG>GGA	p.G109G		NM_001005235	NP_001005235	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGCATTTGGGAACACTGACA	0.483													9	140					0	0	1	0	0
OR1L4	254973	broad.mit.edu	37	9	125486995	125486995	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125486995G>A	uc004bmu.1	+	1	727	c.727G>A	c.(727-729)GGC>AGC	p.G243S		NM_001005235	NP_001005235	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCTACCTGTGGCTCCCACCT	0.537													33	148					0	0	1	0	0
OR1L4	254973	broad.mit.edu	37	9	125487019	125487019	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125487019C>T	uc004bmu.1	+	1	751	c.751C>T	c.(751-753)CTG>TTG	p.L251L		NM_001005235	NP_001005235	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTAGTGGTCCTGTTCTATGG	0.522													12	133					0	0	1	0	0
OR1L6	392390	broad.mit.edu	37	9	125512489	125512489	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125512489C>T	uc011lzc.1	+	1	471	c.471C>T	c.(469-471)ATC>ATT	p.I157I		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	157	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTATGGCCATCGACCGGCTGG	0.527													20	143					0	0	1	0	0
OR1L6	392390	broad.mit.edu	37	9	125513025	125513025	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125513025G>A	uc011lzc.1	+	1	1007	c.1007G>A	c.(1006-1008)AGG>AAG	p.R336K		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	336	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GATATGAAGAGGGGTTTGAAG	0.408													21	42					0	0	1	0	0
OR1K1	392392	broad.mit.edu	37	9	125562841	125562841	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125562841G>A	uc011lze.1	+	1	440	c.440G>A	c.(439-441)GGA>GAA	p.G147E		NM_080859	NP_543135	Q8NGR3	OR1K1_HUMAN	olfactory receptor, family 1, subfamily K,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCCCTGGTGGGAATGGCATGG	0.617													23	63					0	0	1	0	0
RC3H2	54542	broad.mit.edu	37	9	125622214	125622214	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125622214G>A	uc010mwc.1	-	11	2072	c.1831C>T	c.(1831-1833)CCA>TCA	p.P611S	RC3H2_uc004bnc.2_RNA|RC3H2_uc004bnd.1_Missense_Mutation_p.P611S|RC3H2_uc004bne.3_Missense_Mutation_p.P611S	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2	611	Pro-rich.					cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						GGGTACTGTGGGACTTCAAAG	0.353													33	223					0	0	1	0	0
GPR21	2844	broad.mit.edu	37	9	125797421	125797421	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125797421C>T	uc011lzk.1	+	1	576	c.576C>T	c.(574-576)ACC>ACT	p.T192T	RABGAP1_uc004bnl.3_Intron|RABGAP1_uc011lzh.1_Intron|RABGAP1_uc011lzj.1_Intron|GPR21_uc011lzi.1_RNA	NM_005294	NP_005285	Q99679	GPR21_HUMAN	G protein-coupled receptor 21	192	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1						CCTACTTCACCCTGTTCATCG	0.493													27	112					0	0	1	0	0
GPR21	2844	broad.mit.edu	37	9	125797634	125797634	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:125797634C>T	uc011lzk.1	+	1	789	c.789C>T	c.(787-789)ATC>ATT	p.I263I	RABGAP1_uc004bnl.3_Intron|RABGAP1_uc011lzh.1_Intron|RABGAP1_uc011lzj.1_Intron|GPR21_uc011lzi.1_RNA	NM_005294	NP_005285	Q99679	GPR21_HUMAN	G protein-coupled receptor 21	263	Helical; Name=6; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1						TATTTTACATCCTCTGGTTGC	0.507													10	160					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126132444	126132444	+	Missense_Mutation	SNP	G	A	A	rs139824767		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:126132444G>A	uc004bnx.1	+	7	1204	c.1112G>A	c.(1111-1113)GGA>GAA	p.G371E	CRB2_uc004bnw.1_Missense_Mutation_p.G371E	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	371	Extracellular (Potential).|EGF-like 8; calcium-binding (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CTGCACGGCGGAACCTGCAGT	0.602													20	59					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126132589	126132589	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:126132589C>T	uc004bnx.1	+	7	1349	c.1257C>T	c.(1255-1257)GTC>GTT	p.V419V	CRB2_uc004bnw.1_Silent_p.V419V	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	419	Extracellular (Potential).|EGF-like 9.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						AGTCTGGGGTCCACAGTTACG	0.622													8	41					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126134603	126134603	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:126134603G>A	uc004bnx.1	+	9	2676	c.2584G>A	c.(2584-2586)GTC>ATC	p.V862I	CRB2_uc004bnw.1_Missense_Mutation_p.V862I	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	862	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GTGTGAGGAGGTCCCTGATGG	0.393													15	64					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126136884	126136884	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:126136884G>A	uc004bnx.1	+	11	3508	c.3416G>A	c.(3415-3417)AGC>AAC	p.S1139N		NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	1139	Extracellular (Potential).|EGF-like 14.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						AAGGAGTGCAGCCTGAATGTC	0.662													5	56					0	0	1	0	0
DENND1A	57706	broad.mit.edu	37	9	126531810	126531810	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:126531810G>A	uc004bnz.1	-	4	398	c.165C>T	c.(163-165)TTC>TTT	p.F55F	DENND1A_uc004bny.1_5'UTR|DENND1A_uc011lzm.1_Silent_p.F23F|DENND1A_uc004boa.1_Silent_p.F55F|DENND1A_uc004bob.1_Silent_p.F25F|DENND1A_uc004boc.2_Intron	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	55	UDENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						CATAGAAGGGGAAACAAAACT	0.338													35	90					0	0	1	0	0
LHX2	9355	broad.mit.edu	37	9	126777540	126777540	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:126777540C>T	uc004boe.1	+	3	1202	c.463C>T	c.(463-465)CAC>TAC	p.H155Y	LHX2_uc010mwi.1_Missense_Mutation_p.H163Y	NM_004789	NP_004780	P50458	LHX2_HUMAN	LIM homeobox protein 2	155	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CACGGGCGACCACTTCGGCAT	0.607													57	97					0	0	1	0	0
LHX2	9355	broad.mit.edu	37	9	126794844	126794845	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:126794844_126794845CC>TT	uc004boe.1	+	5	1818_1819	c.1079_1080CC>TT	c.(1078-1080)CCC>CTT	p.P360L	LHX2_uc010mwi.1_Missense_Mutation_p.P368L	NM_004789	NP_004780	P50458	LHX2_HUMAN	LIM homeobox protein 2	360						nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCGCTCAGCCCCTCCAGCACGC	0.658													15	37					0	0	1	0	0
LHX2	9355	broad.mit.edu	37	9	126794954	126794955	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:126794954_126794955CC>TT	uc004boe.1	+	5	1928_1929	c.1189_1190CC>TT	c.(1189-1191)CCC>TTC	p.P397F	LHX2_uc010mwi.1_Missense_Mutation_p.P405F	NM_004789	NP_004780	P50458	LHX2_HUMAN	LIM homeobox protein 2	397				GHEPHSPSQTTLTNLF -> AMSLTAPHKRLLPTFSNDSQP PHPTISLKKKLSLV (in Ref. 1; AAB08752).		nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCCTCACAGCCCCTCACAAACG	0.49													23	61					0	0	1	0	0
NR5A1	2516	broad.mit.edu	37	9	127262788	127262788	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127262788C>A	uc004boo.1	-	4	638	c.451G>T	c.(451-453)GGC>TGC	p.G151C		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	151					cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						GCGGCCAGGCCCTTGGGCTCA	0.741													15	17					1.99824e-07	2.00292e-07	1	1	0
NR5A1	2516	broad.mit.edu	37	9	127262850	127262851	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127262850_127262851GG>AA	uc004boo.1	-	4	575_576	c.388_389CC>TT	c.(388-390)CCG>TTG	p.P130L		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	130					cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						AGGGGGCGGCGGGGGCACCCCC	0.703													5	25					0	0	1	0	0
NR6A1	2649	broad.mit.edu	37	9	127300526	127300526	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127300526G>A	uc004bor.1	-	6	847	c.669C>T	c.(667-669)TAC>TAT	p.Y223Y	NR6A1_uc004boq.1_Silent_p.Y218Y|NR6A1_uc010mwq.1_Silent_p.Y219Y	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	223	Sufficient for interaction with UIMC1 (By similarity).				cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						GTATATATTGGTAATGTGGAG	0.493													23	66					0	0	1	0	0
NR6A1	2649	broad.mit.edu	37	9	127302413	127302413	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127302413C>T	uc004bor.1	-	5	673	c.495G>A	c.(493-495)GAG>GAA	p.E165E	NR6A1_uc004boq.1_Silent_p.E161E|NR6A1_uc010mwq.1_Silent_p.E161E	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	165					cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						AGTGATTGGCCTCTTCCTCAA	0.512													27	140					0	0	1	0	0
OLFML2A	169611	broad.mit.edu	37	9	127549481	127549481	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127549481G>A	uc004bov.2	+	2	431	c.318G>A	c.(316-318)ATG>ATA	p.M106I	OLFML2A_uc010mwr.1_Missense_Mutation_p.M106I	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	106											0						AGTGGAAGATGGAGAAACTCA	0.587													22	46					0	0	1	0	0
OLFML2A	169611	broad.mit.edu	37	9	127561577	127561577	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127561577A>G	uc004bov.2	+	4	589	c.476A>G	c.(475-477)AAC>AGC	p.N159S	OLFML2A_uc010mwr.1_Missense_Mutation_p.N123S|OLFML2A_uc004bow.2_5'Flank	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	159	Potential.										0						ATCAAGGCCAACCTGAGCCGG	0.582													15	56					0	0	1	0	0
OLFML2A	169611	broad.mit.edu	37	9	127570141	127570141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127570141C>T	uc004bov.2	+	7	1363	c.1250C>T	c.(1249-1251)GCC>GTC	p.A417V	OLFML2A_uc004bow.2_Missense_Mutation_p.A203V	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	417	Olfactomedin-like.										0						CACGAGGGAGCCTGGATGAAG	0.612													19	38					0	0	1	0	0
PPP6C	5537	broad.mit.edu	37	9	127915924	127915924	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127915924G>A	uc004bpg.3	-	6	778	c.557C>T	c.(556-558)CCT>CTT	p.P186L	PPP6C_uc010mwv.2_Missense_Mutation_p.P223L|PPP6C_uc010mww.2_Missense_Mutation_p.P164L|PPP6C_uc011lzr.1_Missense_Mutation_p.P39L	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	186					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						TCCTTTATGAGGAATTTCCTG	0.433													5	58					0	0	1	0	0
RABEPK	10244	broad.mit.edu	37	9	127990228	127990228	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127990228C>T	uc004bpi.2	+	7	739	c.566C>T	c.(565-567)CCT>CTT	p.P189L	RABEPK_uc004bpj.2_Missense_Mutation_p.P138L|RABEPK_uc004bpk.2_Missense_Mutation_p.P189L|RABEPK_uc004bpl.1_Missense_Mutation_p.P138L|RABEPK_uc004bpm.2_Missense_Mutation_p.P189L	NM_005833	NP_005824	Q7Z6M1	RABEK_HUMAN	Rab9 effector protein with kelch motifs	189	Kelch 3.				receptor-mediated endocytosis|vesicle docking involved in exocytosis	endosome membrane|plasma membrane				ovary(1)	1						CTTGGAAATCCTCCATCTCCC	0.473													26	56					0	0	1	0	0
HSPA5	3309	broad.mit.edu	37	9	127998957	127998957	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:127998957C>T	uc004bpn.2	-	8	2135	c.1879G>A	c.(1879-1881)GTT>ATT	p.V627I		NM_005347	NP_005338	P11021	GRP78_HUMAN	heat shock 70kDa protein 5	627					anti-apoptosis|cellular response to glucose starvation|ER-associated protein catabolic process|platelet activation|platelet degranulation|regulation of protein folding in endoplasmic reticulum	cell surface|endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|integral to endoplasmic reticulum membrane|melanosome|midbody|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|calcium ion binding|caspase inhibitor activity|chaperone binding|misfolded protein binding|protein binding, bridging|protein domain specific binding|ubiquitin protein ligase binding|unfolded protein binding			ovary(3)|skin(1)	4					Antihemophilic Factor(DB00025)	ATTGGTTGAACAATTTCTTCC	0.423										Prostate(1;0.17)			24	85					0	0	1	0	0
FAM125B	89853	broad.mit.edu	37	9	129143376	129143376	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:129143376C>T	uc004bqh.1	+	3	319	c.238C>T	c.(238-240)CTC>TTC	p.L80F	FAM125B_uc004bqg.1_Missense_Mutation_p.L80F|FAM125B_uc011lzy.1_Missense_Mutation_p.L65F|FAM125B_uc010mxd.2_Missense_Mutation_p.L73F|FAM125B_uc011lzz.1_Missense_Mutation_p.L73F	NM_033446	NP_258257	Q9H7P6	F125B_HUMAN	hypothetical protein LOC89853 isoform 1	80	MABP.				protein transport	late endosome membrane					0						GGATGCTGACCTCTGGAAAGA	0.463													37	63					0	0	1	0	0
LMX1B	4010	broad.mit.edu	37	9	129458122	129458122	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:129458122C>T	uc004bqj.2	+	7	872	c.822C>T	c.(820-822)GTC>GTT	p.V274V	LMX1B_uc004bqi.2_Silent_p.V274V|LMX1B_uc011maa.1_Silent_p.V285V	NM_002316	NP_002307	O60663	LMX1B_HUMAN	LIM homeobox transcription factor 1, beta	274					dorsal/ventral pattern formation|in utero embryonic development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCCCAGAGGTCCTGTCCAGCC	0.667									Nail-Patella_Syndrome				10	26					0	0	1	0	0
ZBTB34	403341	broad.mit.edu	37	9	129641745	129641745	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:129641745C>T	uc004bqm.3	+	2	152	c.55C>T	c.(55-57)CTG>TTG	p.L19L		NM_001099270	NP_001092740	Q8NCN2	ZBT34_HUMAN	zinc finger and BTB domain containing 34	19					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CAGCACCGTTCTGAGCCAGCT	0.507													30	97					0	0	1	0	0
ZBTB34	403341	broad.mit.edu	37	9	129642196	129642196	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:129642196C>T	uc004bqm.3	+	2	603	c.506C>T	c.(505-507)TCT>TTT	p.S169F		NM_001099270	NP_001092740	Q8NCN2	ZBT34_HUMAN	zinc finger and BTB domain containing 34	169					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCATATTGCTCTCAGGGACGG	0.587													38	57					0	0	1	0	0
ANGPTL2	23452	broad.mit.edu	37	9	129853969	129853969	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:129853969C>T	uc004bqr.1	-	4	1762	c.1262G>A	c.(1261-1263)AGA>AAA	p.R421K	RALGPS1_uc004bqo.1_Intron|RALGPS1_uc011mab.1_Intron|RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron|ANGPTL2_uc010mxg.1_Missense_Mutation_p.R119K	NM_012098	NP_036230	Q9UKU9	ANGL2_HUMAN	angiopoietin-like 2 precursor	421	Fibrinogen C-terminal.				multicellular organismal development|signal transduction	extracellular space	receptor binding				0						ATCATGATCTCTGTCCAGGGT	0.552													75	239					0	0	1	0	0
SLC2A8	29988	broad.mit.edu	37	9	130167124	130167124	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130167124C>T	uc004bqu.2	+	8	1049	c.1004C>T	c.(1003-1005)GCC>GTC	p.A335V	SLC2A8_uc010mxj.2_Missense_Mutation_p.A335V|SLC2A8_uc004bqv.2_Missense_Mutation_p.A7V	NM_014580	NP_055395	Q9NY64	GTR8_HUMAN	solute carrier family 2 (facilitated glucose	335	Helical; Name=9; (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	D-glucose transmembrane transporter activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2						AGCACGAGTGCCTTCGGCGCC	0.687													9	42					0	0	1	0	0
FAM129B	64855	broad.mit.edu	37	9	130286073	130286073	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130286073G>A	uc004brh.2	-	5	676	c.474C>T	c.(472-474)TTC>TTT	p.F158F	FAM129B_uc004bri.2_Silent_p.F145F|FAM129B_uc004brj.3_Silent_p.F158F	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	158	PH.						protein binding				0						GGATGAGCGGGAACTGTGTGG	0.602											OREG0019507	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	92					0	0	1	0	0
C9orf117	286207	broad.mit.edu	37	9	130473762	130473762	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130473762G>A	uc004brn.1	+	4	882	c.842G>A	c.(841-843)AGA>AAA	p.R281K	PTRH1_uc004brm.2_Intron|C9orf117_uc010mxl.1_RNA	NM_001012502	NP_001012520	Q5JU67	CI117_HUMAN	hypothetical protein LOC286207	281	Potential.										0						AGGCACAAAAGAGGCCACCAG	0.607													13	62					0	0	1	0	0
TTC16	158248	broad.mit.edu	37	9	130479928	130479928	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130479928G>A	uc004brq.1	+	4	370	c.303G>A	c.(301-303)CGG>CGA	p.R101R	PTRH1_uc004brm.2_5'Flank|PTRH1_uc004bro.2_5'Flank|PTRH1_uc010mxm.2_5'Flank|PTRH1_uc011mah.1_Intron|TTC16_uc011mai.1_Intron|TTC16_uc004brr.1_Intron|TTC16_uc010mxn.1_5'Flank	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	101	TPR 2.						binding				0						ATGCCTTACGGGCTGAGGCCT	0.627													24	41					0	0	1	0	0
TTC16	158248	broad.mit.edu	37	9	130488626	130488626	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130488626T>G	uc004brq.1	+	10	1435	c.1368T>G	c.(1366-1368)ATT>ATG	p.I456M	PTRH1_uc011mah.1_5'Flank|TTC16_uc011mai.1_Missense_Mutation_p.I443M|TTC16_uc004brr.1_Missense_Mutation_p.F354C|TTC16_uc010mxn.1_Missense_Mutation_p.I52M	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	456							binding				0						TGCAGAACATTTTTGGGGCCC	0.607													6	60					0	0	1	0	0
TTC16	158248	broad.mit.edu	37	9	130492962	130492962	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130492962G>A	uc004brq.1	+	14	1967	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	TTC16_uc011mai.1_Missense_Mutation_p.E621K|TTC16_uc004brr.1_Silent_p.R454R|TTC16_uc010mxn.1_Missense_Mutation_p.E230K	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	634							binding				0						TATCTGCCAGGAATACAGGAG	0.587													7	37					0	0	1	0	0
SH2D3C	10044	broad.mit.edu	37	9	130501159	130501160	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130501159_130501160CC>TT	uc004bsc.2	-	12	2590_2591	c.2448_2449GG>AA	c.(2446-2451)ACGGAG>ACAAAG	p.E817K	SH2D3C_uc010mxo.2_Missense_Mutation_p.E657K|SH2D3C_uc004bry.2_Missense_Mutation_p.E659K|SH2D3C_uc004brz.3_Missense_Mutation_p.E463K|SH2D3C_uc011mak.1_Missense_Mutation_p.E463K|SH2D3C_uc004bsa.2_Missense_Mutation_p.E660K|SH2D3C_uc004bsb.2_Missense_Mutation_p.E749K	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	817	Ras-GEF.				JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						ATCTGGAACTCCGTGCTGAACA	0.644													4	8					0	0	1	0	0
SH2D3C	10044	broad.mit.edu	37	9	130504133	130504133	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130504133C>T	uc004bsc.2	-	9	2164	c.2022G>A	c.(2020-2022)GAG>GAA	p.E674E	SH2D3C_uc010mxo.2_Silent_p.E514E|SH2D3C_uc004bry.2_Silent_p.E516E|SH2D3C_uc004brz.3_Silent_p.E320E|SH2D3C_uc011mak.1_Silent_p.E320E|SH2D3C_uc004bsa.2_Silent_p.E517E|SH2D3C_uc004bsb.2_Silent_p.E606E	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	674	Ras-GEF.				JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TCCCCCGCAGCTCGGCCGCCA	0.662													27	42					0	0	1	0	0
SH2D3C	10044	broad.mit.edu	37	9	130507048	130507048	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130507048C>T	uc004bsc.2	-	7	1737	c.1595G>A	c.(1594-1596)GGG>GAG	p.G532E	SH2D3C_uc010mxo.2_Missense_Mutation_p.G372E|SH2D3C_uc004bry.2_Missense_Mutation_p.G374E|SH2D3C_uc004brz.3_Missense_Mutation_p.G178E|SH2D3C_uc011mak.1_Missense_Mutation_p.G178E|SH2D3C_uc004bsa.2_Missense_Mutation_p.G375E|SH2D3C_uc004bsb.2_Missense_Mutation_p.G464E	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	532					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TTCAGGGGCCCCATTTTCTGA	0.612													34	255					0	0	1	0	0
SH2D3C	10044	broad.mit.edu	37	9	130509442	130509442	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130509442G>A	uc004bsc.2	-	6	1390	c.1248C>T	c.(1246-1248)TCC>TCT	p.S416S	SH2D3C_uc010mxo.2_Silent_p.S256S|SH2D3C_uc004bry.2_Silent_p.S258S|SH2D3C_uc004brz.3_Silent_p.S62S|SH2D3C_uc011mak.1_Silent_p.S62S|SH2D3C_uc004bsa.2_Silent_p.S259S|SH2D3C_uc004bsb.2_Silent_p.S348S	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	416					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TGTAGGCAGGGGAGCTAGGGC	0.597													16	88					0	0	1	0	0
SH2D3C	10044	broad.mit.edu	37	9	130509543	130509543	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130509543G>A	uc004bsc.2	-	6	1289	c.1147C>T	c.(1147-1149)CTG>TTG	p.L383L	SH2D3C_uc010mxo.2_Silent_p.L223L|SH2D3C_uc004bry.2_Silent_p.L225L|SH2D3C_uc004brz.3_Silent_p.L29L|SH2D3C_uc011mak.1_Silent_p.L29L|SH2D3C_uc004bsa.2_Silent_p.L226L|SH2D3C_uc004bsb.2_Silent_p.L315L	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	383					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						GGGCGGGGCAGCGACGTACTG	0.637													8	23					0	0	1	0	0
SH2D3C	10044	broad.mit.edu	37	9	130511630	130511630	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130511630G>A	uc004bsc.2	-	5	1141	c.999C>T	c.(997-999)GGC>GGT	p.G333G	SH2D3C_uc010mxo.2_Silent_p.G173G|SH2D3C_uc004bry.2_Silent_p.G175G|SH2D3C_uc004brz.3_5'UTR|SH2D3C_uc011mak.1_5'UTR|SH2D3C_uc004bsa.2_Silent_p.G176G|SH2D3C_uc004bsb.2_Silent_p.G265G	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	333					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						CCTGTCCCAGGCCATAGCTGG	0.647													5	63					0	0	1	0	0
SH2D3C	10044	broad.mit.edu	37	9	130511741	130511741	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130511741G>A	uc004bsc.2	-	5	1030	c.888C>T	c.(886-888)CTC>CTT	p.L296L	SH2D3C_uc010mxo.2_Silent_p.L136L|SH2D3C_uc004bry.2_Silent_p.L138L|SH2D3C_uc004brz.3_5'UTR|SH2D3C_uc011mak.1_5'UTR|SH2D3C_uc004bsa.2_Silent_p.L139L|SH2D3C_uc004bsb.2_Silent_p.L228L	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	296	SH2.				JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						GATAGCGCACGAGGGCGGGCA	0.587													7	59					0	0	1	0	0
CDK9	1025	broad.mit.edu	37	9	130550648	130550648	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130550648C>T	uc004bse.2	+	5	711	c.588C>T	c.(586-588)CCC>CCT	p.P196P		NM_001261	NP_001252	P50750	CDK9_HUMAN	cyclin-dependent kinase 9	196	Protein kinase.				cell proliferation|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	transcription elongation factor complex	ATP binding|cyclin-dependent protein kinase activity|DNA binding|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(1)	1						GGTACCGGCCCCCGGAGCTGT	0.667													6	17					0	0	1	0	0
FPGS	2356	broad.mit.edu	37	9	130569509	130569509	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130569509C>T	uc004bsg.1	+	6	573	c.523C>T	c.(523-525)CCC>TCC	p.P175S	FPGS_uc004bsh.1_5'UTR|FPGS_uc011mal.1_Intron|FPGS_uc004bsi.1_Missense_Mutation_p.P125S	NM_004957	NP_004948	Q05932	FOLC_HUMAN	folylpolyglutamate synthase isoform a precursor	175					folic acid metabolic process|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|one-carbon metabolic process	cytosol|mitochondrial matrix	ATP binding|tetrahydrofolylpolyglutamate synthase activity				0					L-Glutamic Acid(DB00142)	TGTCTCCATGCCCCCCTACTT	0.602													41	109					0	0	1	0	0
AK1	203	broad.mit.edu	37	9	130630338	130630339	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130630338_130630339GG>AA	uc004bsm.3	-	7	686_687	c.533_534CC>TT	c.(532-534)TCC>TTT	p.S178F		NM_000476	NP_000467	P00568	KAD1_HUMAN	adenylate kinase 1	178					ATP metabolic process|nucleobase, nucleoside and nucleotide interconversion	cytosol	adenylate kinase activity|ATP binding|protein binding				0						CACTGTCCACGGAGCCCTCAGC	0.673													27	51					0	0	1	0	0
ST6GALNAC4	27090	broad.mit.edu	37	9	130674663	130674663	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130674663G>A	uc004bss.2	-	4	771	c.495C>T	c.(493-495)ACC>ACT	p.T165T	ST6GALNAC4_uc004bst.2_Silent_p.T81T	NM_175039	NP_778204	Q9H4F1	SIA7D_HUMAN	sialyltransferase 7D isoform a	165	Lumenal (Potential).				glycolipid metabolic process|protein glycosylation	integral to Golgi membrane|nucleus|soluble fraction	(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity				0						GCGTGCGGTAGGTGCGGCCGC	0.632													22	62					0	0	1	0	0
NAIF1	203245	broad.mit.edu	37	9	130825767	130825767	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130825767G>A	uc004bta.2	-	2	1143	c.924C>T	c.(922-924)GCC>GCT	p.A308A	NAIF1_uc004bsz.2_RNA	NM_197956	NP_931045	Q69YI7	NAIF1_HUMAN	nuclear apoptosis inducing factor 1	308					apoptosis|induction of apoptosis	nucleus					0						CAGAGGCGGGGGCCGGGTTAG	0.627													25	90					0	0	1	0	0
CIZ1	25792	broad.mit.edu	37	9	130952661	130952661	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130952661G>A	uc004btt.2	-	3	396	c.233C>T	c.(232-234)TCC>TTC	p.S78F	CIZ1_uc004btr.2_Missense_Mutation_p.S78F|CIZ1_uc004bts.2_Missense_Mutation_p.S78F|CIZ1_uc011maq.1_Missense_Mutation_p.S78F|CIZ1_uc004btu.2_Missense_Mutation_p.S78F|CIZ1_uc011mar.1_Intron|CIZ1_uc011mas.1_Missense_Mutation_p.S108F|CIZ1_uc004btw.2_Missense_Mutation_p.S78F|CIZ1_uc004btv.2_Missense_Mutation_p.S78F|CIZ1_uc004btx.2_Missense_Mutation_p.S78F	NM_001131016	NP_001124488	Q9ULV3	CIZ1_HUMAN	CDKN1A interacting zinc finger protein 1 isoform	78						nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4						GTTGAGGAGGGAGGCTGAGTT	0.577													8	20					0	0	1	0	0
DNM1	1759	broad.mit.edu	37	9	130982538	130982538	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130982538G>A	uc011mau.1	+	6	854	c.767G>A	c.(766-768)CGA>CAA	p.R256Q	DNM1_uc010mxr.2_Missense_Mutation_p.R256Q|DNM1_uc011mat.1_Missense_Mutation_p.R256Q	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	256					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						GCTGCTGAACGAAAGTTCTTC	0.547													61	100					0	0	1	0	0
DNM1	1759	broad.mit.edu	37	9	130984529	130984529	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130984529G>A	uc011mau.1	+	7	990	c.903G>A	c.(901-903)CAG>CAA	p.Q301Q	DNM1_uc010mxr.2_Silent_p.Q301Q|DNM1_uc011mat.1_Silent_p.Q301Q	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	301					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						ACAAGCTGCAGAGCCAGCTAC	0.597													26	90					0	0	1	0	0
DNM1	1759	broad.mit.edu	37	9	130984581	130984581	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:130984581C>T	uc011mau.1	+	7	1042	c.955C>T	c.(955-957)CCT>TCT	p.P319S	DNM1_uc010mxr.2_Missense_Mutation_p.P319S|DNM1_uc011mat.1_Missense_Mutation_p.P319S	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	319					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						GAACTTCCGCCCTGATGACCC	0.622													21	31					0	0	1	0	0
DNM1	1759	broad.mit.edu	37	9	131009728	131009728	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131009728C>T	uc011mau.1	+	17	1943	c.1856C>T	c.(1855-1857)TCC>TTC	p.S619F	DNM1_uc011mat.1_Missense_Mutation_p.S619F|DNM1_uc004bub.1_5'UTR|DNM1_uc004buc.1_Missense_Mutation_p.S86F|DNM1_uc004bud.3_RNA|uc004bue.1_5'Flank|MIR199B_hsa-mir-199b|MI0000282_5'Flank|hsa-mir-3154|MI0014182_5'Flank	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	619	PH.				receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						TGGAAGGCCTCCTTCCTGAGG	0.607													6	21					0	0	1	0	0
GOLGA2	2801	broad.mit.edu	37	9	131021480	131021480	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131021480G>A	uc011maw.1	-	19	1995	c.1982C>T	c.(1981-1983)GCC>GTC	p.A661V	GOLGA2_uc010mxw.2_Intron|GOLGA2_uc004buh.2_Missense_Mutation_p.A134V	NM_004486	NP_004477	Q08379	GOGA2_HUMAN	Golgi autoantigen, golgin subfamily a, 2	661	Potential.					Golgi cisterna membrane	protein binding			ovary(1)	1						GGCCATCTCGGCCACCGCTTT	0.622													12	30					0	0	1	0	0
C9orf119	375757	broad.mit.edu	37	9	131038524	131038524	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131038524C>T	uc004bup.2	+	1	100	c.100C>T	c.(100-102)CCT>TCT	p.P34S	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.P34S	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	34					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						GGCCGGCTTTCCTTGGGTGCG	0.682													12	15					0	0	1	0	0
SLC27A4	10999	broad.mit.edu	37	9	131107735	131107735	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131107735C>T	uc004but.2	+	3	747	c.463C>T	c.(463-465)CTC>TTC	p.L155F	SLC27A4_uc004buu.2_Intron	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	155	Helical; (Potential).				long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						GGAGGCAGCCCTCATCAACAC	0.647													4	18					0	0	1	0	0
SLC27A4	10999	broad.mit.edu	37	9	131117932	131117932	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131117932C>T	uc004but.2	+	12	1915	c.1631C>T	c.(1630-1632)ACC>ATC	p.T544I	SLC27A4_uc004buu.2_Missense_Mutation_p.T138I	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	544					long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						CCCCCAGGAACCGAGGGCCGG	0.657													19	72					0	0	1	0	0
SLC27A4	10999	broad.mit.edu	37	9	131118023	131118023	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131118023C>T	uc004but.2	+	12	2006	c.1722C>T	c.(1720-1722)CCC>CCT	p.P574P	SLC27A4_uc004buu.2_Silent_p.P168P	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	574					long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						AGGAACTGCCCCTGTATGCGC	0.652													21	74					0	0	1	0	0
SPTAN1	6709	broad.mit.edu	37	9	131339657	131339657	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131339657C>T	uc004bvl.3	+	8	1070	c.957C>T	c.(955-957)GAC>GAT	p.D319D	SPTAN1_uc011mbg.1_Silent_p.D319D|SPTAN1_uc011mbh.1_Silent_p.D331D|SPTAN1_uc004bvm.3_Silent_p.D319D|SPTAN1_uc004bvn.3_Silent_p.D319D	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	319	Spectrin 4.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						CTGAGGCTGACCGCCTGCAAC	0.498													33	67					0	0	1	0	0
SPTAN1	6709	broad.mit.edu	37	9	131375669	131375669	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131375669C>T	uc004bvl.3	+	39	5151	c.5038C>T	c.(5038-5040)CTG>TTG	p.L1680L	SPTAN1_uc004bvm.3_Silent_p.L1685L|SPTAN1_uc004bvn.3_Silent_p.L1660L	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	1680	Spectrin 18.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						GGTGGAGGCCCTGCTGGCATC	0.478													15	57					0	0	1	0	0
SET	6418	broad.mit.edu	37	9	131455961	131455961	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131455961G>A	uc004bvt.3	+	6	817	c.576G>A	c.(574-576)AGG>AGA	p.R192R	SET_uc004bvu.3_Silent_p.R179R|SET_uc010myg.2_RNA|SET_uc011mbj.1_Silent_p.R168R	NM_001122821	NP_001116293	Q01105	SET_HUMAN	SET translocation (myeloid leukemia-associated)	192					DNA replication|mRNA metabolic process|negative regulation of histone acetylation|negative regulation of neuron apoptosis|negative regulation of transcription, DNA-dependent|nucleocytoplasmic transport|nucleosome assembly|nucleosome disassembly	cytosol|endoplasmic reticulum|nucleoplasm|perinuclear region of cytoplasm|protein complex	histone binding|protein phosphatase inhibitor activity|protein phosphatase type 2A regulator activity				0		Myeloproliferative disorder(178;0.204)		GBM - Glioblastoma multiforme(294;3.1e-09)		AAGCCAGCAGGAAGAGGCAGC	0.438			T	NUP214	AML								7	70					0	0	1	0	0
SET	6418	broad.mit.edu	37	9	131456259	131456259	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131456259G>A	uc004bvt.3	+	7	1028	c.787G>A	c.(787-789)GAA>AAA	p.E263K	SET_uc004bvu.3_Missense_Mutation_p.E250K|SET_uc010myg.2_RNA|SET_uc011mbj.1_Missense_Mutation_p.E239K	NM_001122821	NP_001116293	Q01105	SET_HUMAN	SET translocation (myeloid leukemia-associated)	263	Asp/Glu-rich (highly acidic).				DNA replication|mRNA metabolic process|negative regulation of histone acetylation|negative regulation of neuron apoptosis|negative regulation of transcription, DNA-dependent|nucleocytoplasmic transport|nucleosome assembly|nucleosome disassembly	cytosol|endoplasmic reticulum|nucleoplasm|perinuclear region of cytoplasm|protein complex	histone binding|protein phosphatase inhibitor activity|protein phosphatase type 2A regulator activity				0		Myeloproliferative disorder(178;0.204)		GBM - Glioblastoma multiforme(294;3.1e-09)		agatattgacgaagaagggga	0.095			T	NUP214	AML								8	21					0	0	1	0	0
ZER1	10444	broad.mit.edu	37	9	131515789	131515789	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131515789A>G	uc004bwa.1	-	4	833	c.400T>C	c.(400-402)TTG>CTG	p.L134L		NM_006336	NP_006327	Q7Z7L7	ZER1_HUMAN	zyg-11 homolog B (C. elegans)-like	134					ATP hydrolysis coupled proton transport|regulation of ubiquitin-protein ligase activity	Cul2-RING ubiquitin ligase complex|vacuolar proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism|ubiquitin-protein ligase activity			ovary(1)	1						AAGAGGCTCAAGGACACCAGG	0.567													8	46					0	0	1	0	0
TBC1D13	54662	broad.mit.edu	37	9	131559401	131559401	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131559401C>T	uc010myj.2	+	7	574	c.451C>T	c.(451-453)CCC>TCC	p.P151S	TBC1D13_uc010myk.2_Missense_Mutation_p.P151S|TBC1D13_uc010myl.2_5'UTR	NM_018201	NP_060671	Q9NVG8	TBC13_HUMAN	TBC1 domain family, member 13	151	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0						CATCCTGGACCCCCAGAATGA	0.517													29	108					0	0	1	0	0
CCBL1	883	broad.mit.edu	37	9	131600089	131600089	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131600089G>A	uc004bwh.2	-	6	627	c.442C>T	c.(442-444)CCC>TCC	p.P148S	CCBL1_uc004bwf.2_Missense_Mutation_p.P182S|CCBL1_uc004bwg.2_RNA|CCBL1_uc010myn.2_Missense_Mutation_p.P148S|CCBL1_uc004bwj.2_Missense_Mutation_p.P98S|CCBL1_uc011mbl.1_Missense_Mutation_p.P242S|CCBL1_uc004bwi.2_RNA|CCBL1_uc010myo.2_Intron	NM_004059	NP_004050	Q16773	KAT1_HUMAN	kynurenine aminotransferase I isoform a	148					kynurenine metabolic process|L-phenylalanine catabolic process|tryptophan catabolic process	cytosol|nucleus	1-aminocyclopropane-1-carboxylate synthase activity|cysteine-S-conjugate beta-lyase activity|glutamine-phenylpyruvate transaminase activity|kynurenine-oxoglutarate transaminase activity|L-glutamine:pyruvate aminotransferase activity|L-phenylalanine:pyruvate aminotransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamine(DB00130)|Pyridoxal Phosphate(DB00114)	TTCTGGATGGGACCCTGCAAG	0.582													5	61					0	0	1	0	0
LRRC8A	56262	broad.mit.edu	37	9	131670757	131670757	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131670757C>T	uc004bwl.3	+	3	1568	c.1314C>T	c.(1312-1314)ATC>ATT	p.I438I	LRRC8A_uc010myp.2_Silent_p.I438I|LRRC8A_uc010myq.2_Silent_p.I438I	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	438	LRR 3.				pre-B cell differentiation	integral to membrane					0						TCAGTGGCATCCCTGACACTG	0.612													9	26					0	0	1	0	0
PHYHD1	254295	broad.mit.edu	37	9	131702715	131702715	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131702715C>T	uc004bwo.2	+	10	1458	c.525C>T	c.(523-525)ATC>ATT	p.I175I	PHYHD1_uc004bwn.2_Missense_Mutation_p.S168L|PHYHD1_uc004bwm.2_RNA|PHYHD1_uc004bwp.2_Silent_p.I154I|NUP188_uc004bwq.1_5'Flank	NM_001100876	NP_001094346	Q5SRE7	PHYD1_HUMAN	phytanoyl-CoA dioxygenase domain containing 1	175							metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCGTGTGGATCGCAGTGGAGG	0.647													23	77					0	0	1	0	0
DOLK	22845	broad.mit.edu	37	9	131708608	131708608	+	Silent	SNP	G	A	A	rs149462670		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131708608G>A	uc004bwr.2	-	1	1405	c.975C>T	c.(973-975)TCC>TCT	p.S325S	NUP188_uc004bws.1_5'Flank|NUP188_uc004bwq.1_Intron	NM_014908	NP_055723	Q9UPQ8	DOLK_HUMAN	dolichol kinase	325	Cytoplasmic (Potential).				dolichyl diphosphate biosynthetic process|dolichyl monophosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane|membrane fraction	dolichol kinase activity				0						TCTTGGACTCGGAAGATGACC	0.572													66	150					0	0	1	0	0
NUP188	23511	broad.mit.edu	37	9	131733085	131733085	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131733085C>T	uc004bws.1	+	11	983	c.961C>T	c.(961-963)CCA>TCA	p.P321S		NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	321					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						ACATCATGCCCCAGTGCTTTT	0.483													27	79					0	0	1	0	0
NUP188	23511	broad.mit.edu	37	9	131744851	131744851	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131744851C>T	uc004bws.1	+	16	1562	c.1540C>T	c.(1540-1542)CCT>TCT	p.P514S	NUP188_uc004bwu.2_5'Flank	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	514					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						CCTTCGCATACCTCAAGGCAC	0.428													26	80					0	0	1	0	0
NUP188	23511	broad.mit.edu	37	9	131750420	131750420	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131750420C>T	uc004bws.1	+	24	2510	c.2488C>T	c.(2488-2490)CCT>TCT	p.P830S	NUP188_uc004bwu.2_Missense_Mutation_p.P173S	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	830					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						GCTGAAACCTCCTTCTAATGT	0.498													54	188					0	0	1	0	0
FAM73B	84895	broad.mit.edu	37	9	131802909	131802909	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131802909C>T	uc004bxa.2	+	2	222	c.36C>T	c.(34-36)ATC>ATT	p.I12I	FAM73B_uc004bwy.2_RNA|FAM73B_uc004bwz.2_RNA|FAM73B_uc011mbn.1_Silent_p.I12I	NM_032809	NP_116198	Q7L4E1	FA73B_HUMAN	hypothetical protein LOC84895	12	Helical; (Potential).					integral to membrane				skin(1)	1						CGTCTATGATCCAGGCCCTGG	0.592													11	34					0	0	1	0	0
FAM73B	84895	broad.mit.edu	37	9	131804628	131804628	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131804628C>T	uc004bxa.2	+	3	328	c.142C>T	c.(142-144)CTC>TTC	p.L48F	FAM73B_uc004bwy.2_RNA|FAM73B_uc004bwz.2_RNA|FAM73B_uc011mbn.1_Missense_Mutation_p.L48F	NM_032809	NP_116198	Q7L4E1	FA73B_HUMAN	hypothetical protein LOC84895	48	Helical; (Potential).					integral to membrane				skin(1)	1						GCGGAAAGTCCTCTTTGCCAC	0.647													11	35					0	0	1	0	0
DOLPP1	57171	broad.mit.edu	37	9	131847378	131847378	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131847378C>T	uc004bxc.2	+	3	282	c.254C>T	c.(253-255)CCC>CTC	p.P85L	DOLPP1_uc004bxd.2_Missense_Mutation_p.P85L|DOLPP1_uc004bxe.2_Intron|DOLPP1_uc004bxf.2_5'Flank	NM_020438	NP_065171	Q86YN1	DOPP1_HUMAN	dolichyl pyrophosphate phosphatase 1 isoform a	85					dolichyl diphosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane	dolichyldiphosphatase activity			skin(1)	1						GAGCCACGGCCCTGTGGAGGT	0.632													8	48					0	0	1	0	0
IER5L	389792	broad.mit.edu	37	9	131939645	131939645	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:131939645G>A	uc010myt.1	-	1	896	c.687C>T	c.(685-687)CCC>CCT	p.P229P		NM_203434	NP_982258	Q5T953	IER5L_HUMAN	immediate early response 5-like	229	Ala-rich.										0		Ovarian(14;0.0448)|Medulloblastoma(224;0.235)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)		gggaggaggcgggggccgggg	0.363													8	14					0	0	1	0	0
PRRX2	51450	broad.mit.edu	37	9	132483027	132483027	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:132483027C>T	uc004byh.2	+	3	827	c.600C>T	c.(598-600)CTC>CTT	p.L200L		NM_016307	NP_057391	Q99811	PRRX2_HUMAN	paired related homeobox 2	200						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1		Ovarian(14;0.00556)				CAGATTATCTCTCCTGGACAG	0.662													15	53					0	0	1	0	0
PTGES	9536	broad.mit.edu	37	9	132510954	132510954	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:132510954G>A	uc004byi.2	-	2	242	c.189C>T	c.(187-189)CCC>CCT	p.P63P	PTGES_uc010myy.2_RNA|PTGES_uc004byj.2_Silent_p.P63P	NM_004878	NP_004869	O14684	PTGES_HUMAN	prostaglandin E synthase	63	Helical.				prostaglandin biosynthetic process|signal transduction	integral to membrane|membrane fraction	glutathione binding|prostaglandin-E synthase activity			skin(1)	1		Ovarian(14;0.00556)				GTTCCACGTCGGGGTCGCTCC	0.602													5	20					0	0	1	0	0
USP20	10868	broad.mit.edu	37	9	132623221	132623221	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:132623221C>T	uc004bys.2	+	7	547	c.336C>T	c.(334-336)TCC>TCT	p.S112S	USP20_uc004byr.2_Silent_p.S112S|USP20_uc004byt.1_Silent_p.S112S	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	112					endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				CACAGGACTCCCCGCCACCCT	0.567													70	136					0	0	1	0	0
NCS1	23413	broad.mit.edu	37	9	132985378	132985378	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:132985378C>T	uc004bzi.2	+	6	500	c.414C>T	c.(412-414)CTC>CTT	p.L138L	NCS1_uc010myz.1_Silent_p.L120L	NM_014286	NP_055101	P62166	NCS1_HUMAN	frequenin homolog isoform 1	138					negative regulation of calcium ion transport via voltage-gated calcium channel activity|regulation of neuron projection development	cell junction|Golgi cisterna membrane|perinuclear region of cytoplasm|postsynaptic density|postsynaptic membrane	calcium ion binding|protein binding				0						CCGTGGAGCTCCCAGAGGAGG	0.657													11	41					0	0	1	0	0
ASS1	445	broad.mit.edu	37	9	133333958	133333958	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133333958C>T	uc004bzm.2	+	5	701	c.345C>T	c.(343-345)TCC>TCT	p.S115S	ASS1_uc004bzn.2_Silent_p.S115S|ASS1_uc010mza.2_Silent_p.S191S|ASS1_uc004bzo.2_Silent_p.S115S|ASS1_uc010mzb.2_Silent_p.S153S|ASS1_uc004bzp.2_Silent_p.S115S|ASS1_uc010mzc.2_Silent_p.S115S	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	115	ATP (By similarity).				arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	AGTATGTGTCCCACGGCGCCA	0.647													6	22					0	0	1	0	0
ASS1	445	broad.mit.edu	37	9	133339513	133339513	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133339513C>T	uc004bzm.2	+	6	735	c.379C>T	c.(379-381)CGG>TGG	p.R127W	ASS1_uc004bzn.2_Missense_Mutation_p.R127W|ASS1_uc010mza.2_Missense_Mutation_p.R203W|ASS1_uc004bzo.2_Intron|ASS1_uc010mzb.2_Missense_Mutation_p.R165W|ASS1_uc004bzp.2_Missense_Mutation_p.R127W|ASS1_uc010mzc.2_Missense_Mutation_p.R127W	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	127		Citrulline.	R -> W (in CTLN1; severe clinical course).|R -> Q (in CTLN1).		arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	CGATCAGGTCCGGTTTGAGCT	0.602													10	64					0	0	1	0	0
FUBP3	8939	broad.mit.edu	37	9	133488412	133488412	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133488412C>T	uc004bzr.1	+	5	452	c.344C>T	c.(343-345)TCA>TTA	p.S115L	FUBP3_uc010mzd.1_Missense_Mutation_p.S55L|FUBP3_uc004bzs.1_Missense_Mutation_p.S28L	NM_003934	NP_003925	Q96I24	FUBP3_HUMAN	far upstream element (FUSE) binding protein 3	115	KH 1.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000279)		CAGATTGCTTCAGGTAAGGGC	0.373													24	42					0	0	1	0	0
FUBP3	8939	broad.mit.edu	37	9	133507337	133507337	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133507337C>T	uc004bzr.1	+	15	1469	c.1361C>T	c.(1360-1362)CCT>CTT	p.P454L	FUBP3_uc004bzs.1_Missense_Mutation_p.P367L	NM_003934	NP_003925	Q96I24	FUBP3_HUMAN	far upstream element (FUSE) binding protein 3	454					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000279)		AGTACCTTTCCTCCAAGGAGC	0.602													26	82					0	0	1	0	0
PRDM12	59335	broad.mit.edu	37	9	133540058	133540058	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133540058C>T	uc004bzt.1	+	1	78	c.18C>T	c.(16-18)CTC>CTT	p.L6L		NM_021619	NP_067632	Q9H4Q4	PRD12_HUMAN	PR domain containing 12	6					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		GCTCCGTGCTCCCGGCTGAGG	0.403													8	11					0	0	1	0	0
EXOSC2	23404	broad.mit.edu	37	9	133576301	133576301	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133576301G>A	uc004bzu.2	+	6	495	c.474G>A	c.(472-474)ACG>ACA	p.T158T	EXOSC2_uc011mbz.1_Intron|EXOSC2_uc011mca.1_Intron	NM_014285	NP_055100	Q13868	EXOS2_HUMAN	exosome component 2	158	S1 motif.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|positive regulation of cell growth|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|7S RNA binding|protein binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(13;0.0588)		OV - Ovarian serous cystadenocarcinoma(145;0.000324)		CTTTGCACACGAGGAGCCTGA	0.502											OREG0019548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	56					0	0	1	0	0
ABL1	25	broad.mit.edu	37	9	133748382	133748382	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133748382C>T	uc004bzw.2	+	6	1046	c.1043C>T	c.(1042-1044)TCG>TTG	p.S348L	ABL1_uc004bzv.2_Missense_Mutation_p.S367L	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	348	Protein kinase.				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	ACTCAGATCTCGTCAGCCATG	0.607			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								7	52					0	0	1	0	0
ABL1	25	broad.mit.edu	37	9	133760622	133760622	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133760622C>T	uc004bzw.2	+	11	2948	c.2945C>T	c.(2944-2946)CCC>CTC	p.P982L	ABL1_uc004bzv.2_Missense_Mutation_p.P1001L	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	982	F-actin-binding.|Pro-rich.			P -> PL (in Ref. 1; AAA51561).	actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	GCCCCCGTTCCCTCCACGTTG	0.652			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								13	105					0	0	1	0	0
QRFP	347148	broad.mit.edu	37	9	133768912	133768912	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133768912C>T	uc011mcb.1	-	1	314	c.314G>A	c.(313-315)GGG>GAG	p.G105E		NM_198180	NP_937823	P83859	OX26_HUMAN	RF(Arg-Phe)amide family 26 amino acid peptide	105					locomotory behavior|neuropeptide signaling pathway|positive regulation of blood pressure|regulation of feeding behavior	extracellular region	neuropeptide hormone activity|orexigenic neuropeptide QRFP receptor binding				0	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.17e-05)|Epithelial(140;0.000267)		GGTCTTCTCCCCCGCAGCAGG	0.647													36	106					0	0	1	0	0
FIBCD1	84929	broad.mit.edu	37	9	133779647	133779647	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133779647G>A	uc004bzz.2	-	7	1435	c.1190C>T	c.(1189-1191)TCA>TTA	p.S397L	FIBCD1_uc011mcc.1_Missense_Mutation_p.S397L	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	397	Fibrinogen C-terminal.|Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		GTTGTTCTCTGAATGGTCGCT	0.652													27	99					0	0	1	0	0
FIBCD1	84929	broad.mit.edu	37	9	133787240	133787240	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133787240G>A	uc004bzz.2	-	5	1130	c.885C>T	c.(883-885)TTC>TTT	p.F295F	FIBCD1_uc011mcc.1_Silent_p.F295F	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	295	Fibrinogen C-terminal.|Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		AGCCCCGGAAGAAGTTCACGG	0.677													5	8					0	0	1	0	0
FIBCD1	84929	broad.mit.edu	37	9	133799148	133799149	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133799148_133799149CC>TT	uc004bzz.2	-	4	1076_1077	c.831_832GG>AA	c.(829-834)ACGGAC>ACAAAC	p.D278N	FIBCD1_uc011mcc.1_Missense_Mutation_p.D278N	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	278	Fibrinogen C-terminal.|Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		CCGCCGCCGTCCGTGCGCATGT	0.673													8	25					0	0	1	0	0
FIBCD1	84929	broad.mit.edu	37	9	133805017	133805017	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133805017C>T	uc004bzz.2	-	2	734	c.489G>A	c.(487-489)AAG>AAA	p.K163K	FIBCD1_uc011mcc.1_Silent_p.K163K|FIBCD1_uc011mcd.1_Silent_p.K171K	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	163	Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		TGCCATGCCCCTTCCGCAGCC	0.701													5	25					0	0	1	0	0
FIBCD1	84929	broad.mit.edu	37	9	133805038	133805038	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133805038C>T	uc004bzz.2	-	2	713	c.468G>A	c.(466-468)ACG>ACA	p.T156T	FIBCD1_uc011mcc.1_Silent_p.T156T|FIBCD1_uc011mcd.1_Silent_p.T164T	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	156	Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		CCATGCACTCCGTCTGCAGCT	0.721													8	21					0	0	1	0	0
LAMC3	10319	broad.mit.edu	37	9	133911710	133911710	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133911710G>A	uc004caa.1	+	4	1065	c.967G>A	c.(967-969)GAG>AAG	p.E323K		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	323	Laminin EGF-like 1.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		GGCTGCCCACGAGTGTCTGCG	0.677													14	43					0	0	1	0	0
LAMC3	10319	broad.mit.edu	37	9	133942568	133942568	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:133942568C>T	uc004caa.1	+	14	2667	c.2569C>T	c.(2569-2571)CCT>TCT	p.P857S		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	857	Laminin EGF-like 8.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		CGCCCTGGCCCCTCGACCCGC	0.647													46	48					0	0	1	0	0
NUP214	8021	broad.mit.edu	37	9	134049606	134049606	+	Missense_Mutation	SNP	C	T	T	rs140330621		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:134049606C>T	uc004cag.2	+	22	3169	c.3058C>T	c.(3058-3060)CGC>TGC	p.R1020C	NUP214_uc004cah.2_Missense_Mutation_p.R1010C|NUP214_uc004cai.2_Missense_Mutation_p.R450C|NUP214_uc004caf.1_Missense_Mutation_p.R1009C|NUP214_uc010mzf.2_Missense_Mutation_p.R318C	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1020	11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CCCCGTGGTTCGCACTCCTTC	0.562			T	DEK|SET|ABL1	AML|T-ALL								44	65					0	0	1	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134497252	134497253	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:134497252_134497253GG>AA	uc004cbc.2	-	11	1914_1915	c.1784_1785CC>TT	c.(1783-1785)TCC>TTT	p.S595F	RAPGEF1_uc004cbb.2_Missense_Mutation_p.S613F|RAPGEF1_uc010mzm.2_RNA|RAPGEF1_uc010mzn.2_Missense_Mutation_p.S600F|RAPGEF1_uc004cbd.2_Missense_Mutation_p.S600F|RAPGEF1_uc010mzs.1_Missense_Mutation_p.S41F|RAPGEF1_uc010mzl.1_Missense_Mutation_p.S41F|RAPGEF1_uc010mzo.1_Missense_Mutation_p.S41F|RAPGEF1_uc010mzp.1_Missense_Mutation_p.S41F|RAPGEF1_uc010mzq.1_Missense_Mutation_p.S41F|RAPGEF1_uc010mzr.1_Missense_Mutation_p.S41F	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	595					activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		CCCCACTGAAGGAGTCGCTGAA	0.609													6	15					0	0	1	0	0
NTNG2	84628	broad.mit.edu	37	9	135042402	135042402	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135042402G>A	uc004cbh.2	+	2	960	c.184G>A	c.(184-186)GGA>AGA	p.G62R		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	62	Laminin N-terminal.				axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		CATCACATGTGGAGACCCCCC	0.587													4	35					0	0	1	0	0
NTNG2	84628	broad.mit.edu	37	9	135073590	135073590	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135073590C>T	uc004cbh.2	+	3	1227	c.451C>T	c.(451-453)CTG>TTG	p.L151L		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	151	Laminin N-terminal.				axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		GGTCATGGTCCTGGAGAAGTC	0.652													14	39					0	0	1	0	0
SETX	23064	broad.mit.edu	37	9	135140051	135140051	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135140051G>A	uc004cbk.2	-	26	7792	c.7609C>T	c.(7609-7611)CAG>TAG	p.Q2537*	SETX_uc004cbj.2_Nonsense_Mutation_p.Q2185*|SETX_uc010mzt.2_Nonsense_Mutation_p.Q2123*	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	2537					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		CGTGGGTCCTGAAGTTGGTCA	0.502													14	107					0	0	1	0	0
SETX	23064	broad.mit.edu	37	9	135203728	135203728	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135203728G>A	uc004cbk.2	-	10	3440	c.3257C>T	c.(3256-3258)TCA>TTA	p.S1086L	SETX_uc004cbj.2_Missense_Mutation_p.S705L|SETX_uc010mzt.2_Missense_Mutation_p.S705L	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	1086					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		CACTTCAGATGAACTTTCAAA	0.348													14	103					0	0	1	0	0
SETX	23064	broad.mit.edu	37	9	135205499	135205499	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135205499G>A	uc004cbk.2	-	10	1669	c.1486C>T	c.(1486-1488)CCT>TCT	p.P496S	SETX_uc004cbj.2_Missense_Mutation_p.P115S|SETX_uc010mzt.2_Missense_Mutation_p.P115S	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	496					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		GCAGTGGTAGGAAGCTTGGCA	0.428													19	91					0	0	1	0	0
SETX	23064	broad.mit.edu	37	9	135206752	135206752	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135206752G>T	uc004cbk.2	-	8	1105	c.922C>A	c.(922-924)CTT>ATT	p.L308I	SETX_uc004cbj.2_5'Flank|SETX_uc010mzt.2_5'Flank	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	308					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		GGATCCATAAGTTGACCCCAG	0.433													16	62					4.14922e-12	4.1658e-12	1	1	0
TTF1	7270	broad.mit.edu	37	9	135266134	135266134	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135266134G>A	uc004cbl.2	-	7	2124	c.2072C>T	c.(2071-2073)CCC>CTC	p.P691L	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Missense_Mutation_p.P176L	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	691	Myb-like 2.				negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		TAACTCCTGGGGAGACATCTT	0.408													28	186					0	0	1	0	0
C9orf171	389799	broad.mit.edu	37	9	135413078	135413078	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135413078G>A	uc004cbn.2	+	5	771	c.723G>A	c.(721-723)CTG>CTA	p.L241L	C9orf171_uc004cbo.2_Silent_p.L205L	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	241										ovary(4)|large_intestine(1)	5						CCATCAAACTGGAGAAGAAGC	0.557													28	77					0	0	1	0	0
C9orf171	389799	broad.mit.edu	37	9	135447811	135447811	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135447811G>A	uc004cbn.2	+	7	925	c.877G>A	c.(877-879)GAT>AAT	p.D293N	C9orf171_uc004cbo.2_Missense_Mutation_p.D257N	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	293										ovary(4)|large_intestine(1)	5						CACGGAGGCCGATCGCCAGAG	0.622													34	57					0	0	1	0	0
C9orf171	389799	broad.mit.edu	37	9	135447862	135447863	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135447862_135447863GG>AA	uc004cbn.2	+	7	976_977	c.928_929GG>AA	c.(928-930)GGG>AAG	p.G310K	C9orf171_uc004cbo.2_Missense_Mutation_p.G274K	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	310										ovary(4)|large_intestine(1)	5						CGTGCGCCAGGGGACCCTGCGG	0.599													13	32					0	0	1	0	0
BARHL1	56751	broad.mit.edu	37	9	135462841	135462841	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135462841G>A	uc004cbp.1	+	2	784	c.592G>A	c.(592-594)GAG>AAG	p.E198K		NM_020064	NP_064448	Q9BZE3	BARH1_HUMAN	BarH-like homeobox 1	198	Homeobox.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(145;1.79e-06)|Epithelial(140;3.12e-05)		GCGCAGCTTCGAGCGGCAGAA	0.662													4	18					0	0	1	0	0
DDX31	64794	broad.mit.edu	37	9	135487526	135487526	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135487526G>A	uc004cbq.1	-	19	2409	c.2257C>T	c.(2257-2259)CCC>TCC	p.P753S	DDX31_uc010mzu.1_Missense_Mutation_p.P680S	NM_022779	NP_073616	Q9H8H2	DDX31_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	753						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(145;2.67e-06)|Epithelial(140;7.61e-05)		AGATTCCTGGGGGCATCTCTT	0.552													32	131					0	0	1	0	0
DDX31	64794	broad.mit.edu	37	9	135487632	135487632	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135487632G>A	uc004cbq.1	-	19	2303	c.2151C>T	c.(2149-2151)TCC>TCT	p.S717S	DDX31_uc010mzu.1_Silent_p.S644S	NM_022779	NP_073616	Q9H8H2	DDX31_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	717						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(145;2.67e-06)|Epithelial(140;7.61e-05)		CTTGGATGAAGGACTGCAGAG	0.562													9	54					0	0	1	0	0
GTF3C4	9329	broad.mit.edu	37	9	135554173	135554173	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135554173C>T	uc010mzv.2	+	2	1425	c.1167C>T	c.(1165-1167)AGC>AGT	p.S389S	GTF3C4_uc010mzw.2_RNA	NM_012204	NP_036336	Q9UKN8	TF3C4_HUMAN	general transcription factor IIIC 4	389					transcription initiation from RNA polymerase III promoter	transcription factor TFIIIC complex	DNA binding|enzyme activator activity|histone acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(145;8.15e-07)|Epithelial(140;2.6e-05)		GTAGTTGCAGCTTAGTAGTGG	0.443													56	123					0	0	1	0	0
GTF3C4	9329	broad.mit.edu	37	9	135554246	135554246	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135554246C>T	uc010mzv.2	+	2	1498	c.1240C>T	c.(1240-1242)CAC>TAC	p.H414Y	GTF3C4_uc010mzw.2_RNA	NM_012204	NP_036336	Q9UKN8	TF3C4_HUMAN	general transcription factor IIIC 4	414					transcription initiation from RNA polymerase III promoter	transcription factor TFIIIC complex	DNA binding|enzyme activator activity|histone acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(145;8.15e-07)|Epithelial(140;2.6e-05)		GCTGAATGTTCACAATTCCCA	0.458													49	121					0	0	1	0	0
GTF3C4	9329	broad.mit.edu	37	9	135554457	135554457	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135554457C>T	uc010mzv.2	+	2	1709	c.1451C>T	c.(1450-1452)CCC>CTC	p.P484L	GTF3C4_uc010mzw.2_RNA	NM_012204	NP_036336	Q9UKN8	TF3C4_HUMAN	general transcription factor IIIC 4	484					transcription initiation from RNA polymerase III promoter	transcription factor TFIIIC complex	DNA binding|enzyme activator activity|histone acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(145;8.15e-07)|Epithelial(140;2.6e-05)		GCAGTGAGCCCCTGCGGTGCA	0.473													7	77					0	0	1	0	0
C9orf98	158067	broad.mit.edu	37	9	135690087	135690087	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135690087G>A	uc004cbu.1	-	10	1473	c.917C>T	c.(916-918)GCT>GTT	p.A306V	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_Missense_Mutation_p.A102V	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	306	Adenylate kinase.					cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		ATCTGCCACAGCCTCTTTCAG	0.493													16	53					0	0	1	0	0
C9orf98	158067	broad.mit.edu	37	9	135698623	135698623	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135698623G>A	uc004cbu.1	-	9	1414	c.858C>T	c.(856-858)GCC>GCT	p.A286A	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_Silent_p.A82A	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	286	Adenylate kinase.					cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		GGGCCAGGAGGGCGGCCTGCA	0.627													61	104					0	0	1	0	0
C9orf9	11092	broad.mit.edu	37	9	135759459	135759460	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135759459_135759460CC>GT	uc004cbx.1	+	2	236_237	c.125_126CC>GT	c.(124-126)CCC>CGT	p.P42R	C9orf9_uc004cby.1_Missense_Mutation_p.P42R|C9orf9_uc004cbz.1_Missense_Mutation_p.P42R	NM_018956	NP_061829	Q96E40	CI009_HUMAN	Rsb-66 protein	42								p.?(1)			0				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|GBM - Glioblastoma multiforme(294;4.84e-07)|Epithelial(140;1.28e-06)		AAGATCCGGCCCATCTCCAGCA	0.5													7	53					0	0	1	0	0
TSC1	7248	broad.mit.edu	37	9	135781419	135781419	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135781419G>A	uc004cca.2	-	15	1780	c.1546C>T	c.(1546-1548)CAG>TAG	p.Q516*	TSC1_uc004ccb.3_Nonsense_Mutation_p.Q515*|TSC1_uc011mcq.1_Nonsense_Mutation_p.Q465*|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359	Q92574	TSC1_HUMAN	tuberous sclerosis 1 protein isoform 1	516					activation of Rho GTPase activity|cell cycle arrest|cell-matrix adhesion|insulin receptor signaling pathway|negative regulation of cell proliferation|negative regulation of protein ubiquitination|negative regulation of TOR signaling cascade|negative regulation of translation|positive regulation of focal adhesion assembly|regulation of phosphoprotein phosphatase activity|regulation of stress fiber assembly|rRNA export from nucleus	cell cortex|lamellipodium|membrane|TSC1-TSC2 complex	chaperone binding|protein N-terminus binding	p.?(1)		lung(4)|central_nervous_system(3)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|urinary_tract(1)|skin(1)|ovary(1)|bone(1)	14				OV - Ovarian serous cystadenocarcinoma(145;4.32e-08)|Epithelial(140;2.72e-06)		GTCTTCCGCTGAGAACCTGGG	0.567			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				14	39					0	0	1	0	0
GFI1B	8328	broad.mit.edu	37	9	135862086	135862086	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135862086G>A	uc004ccg.2	+	2	172	c.21G>A	c.(19-21)GTG>GTA	p.V7V	GFI1B_uc010mzy.2_Silent_p.V7V	NM_004188	NP_004179	Q5VTD9	GFI1B_HUMAN	growth factor independent 1B transcription	7	Mediates repression of transcription.				cell proliferation|chromatin modification|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;9.04e-07)|Epithelial(140;1.17e-05)		CCTTCCTGGTGAAGAGCAAGA	0.602													7	20					0	0	1	0	0
GFI1B	8328	broad.mit.edu	37	9	135866329	135866329	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135866329C>T	uc004ccg.2	+	7	1036	c.885C>T	c.(883-885)AGC>AGT	p.S295S	GFI1B_uc010mzy.2_Silent_p.S249S	NM_004188	NP_004179	Q5VTD9	GFI1B_HUMAN	growth factor independent 1B transcription	295	C2H2-type 5.|Mediates interaction with GATA1.|Interaction with ARIH2.				cell proliferation|chromatin modification|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;9.04e-07)|Epithelial(140;1.17e-05)		TCACCCACAGCCGCAAGCACA	0.632													13	52					0	0	1	0	0
GTF3C5	9328	broad.mit.edu	37	9	135919191	135919191	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135919191C>T	uc004cci.3	+	3	787	c.450C>T	c.(448-450)CTC>CTT	p.L150L	GTF3C5_uc010mzz.2_Silent_p.L25L|GTF3C5_uc004ccj.3_Silent_p.L150L	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	150						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		ACAAGGTGCTCATGCTCCGGC	0.582													14	114					0	0	1	0	0
RALGDS	5900	broad.mit.edu	37	9	135975712	135975712	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:135975712G>A	uc004cco.2	-	17	2532	c.2512C>T	c.(2512-2514)CTG>TTG	p.L838L	RALGDS_uc004cct.1_5'Flank|RALGDS_uc004ccn.2_Silent_p.L26L|RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Silent_p.L826L|RALGDS_uc004ccr.2_Silent_p.L837L|RALGDS_uc011mcv.1_Silent_p.L809L|RALGDS_uc004ccs.2_Silent_p.L783L|RALGDS_uc011mcw.1_Silent_p.L909L|RALGDS_uc004ccv.1_3'UTR|RALGDS_uc004ccu.1_3'UTR	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	838	Ras-associating.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		TCCTCCTCCAGGTTGTGTTTG	0.597			T	CIITA	PMBL|Hodgkin Lymphona|								122	200					0	0	1	0	0
GBGT1	26301	broad.mit.edu	37	9	136030652	136030652	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136030652G>A	uc004ccw.2	-	6	553	c.272C>T	c.(271-273)TCC>TTC	p.S91F	RALGDS_uc011mcw.1_Silent_p.L103L|GBGT1_uc004ccx.2_Missense_Mutation_p.S44F|GBGT1_uc010nab.2_Silent_p.L103L|GBGT1_uc011mcx.1_Missense_Mutation_p.S74F|GBGT1_uc010nac.1_5'UTR|GBGT1_uc004ccy.1_Missense_Mutation_p.S91F	NM_021996	NP_068836	Q8N5D6	GBGT1_HUMAN	globoside	91	Lumenal (Potential).				carbohydrate metabolic process|glycolipid biosynthetic process	Golgi membrane|integral to membrane	metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(145;3.49e-06)|Epithelial(140;2.59e-05)		GGTTCCCTCGGAGACGATGGG	0.597													10	26					0	0	1	0	0
OBP2B	29989	broad.mit.edu	37	9	136083927	136083927	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136083927C>T	uc004ccz.2	-	2	177	c.135G>A	c.(133-135)AGG>AGA	p.R45R	OBP2B_uc010nad.2_RNA|OBP2B_uc011mcy.1_Intron	NM_014581	NP_055396	Q9NPH6	OBP2B_HUMAN	odorant binding protein 2B precursor	45					chemosensory behavior|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.41e-06)|Epithelial(140;1.88e-05)		CCTTCCTGGGCCTCCTGTCCT	0.622													11	11					0	0	1	0	0
ABO	28	broad.mit.edu	37	9	136131706	136131706	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136131706C>T	uc004cda.1	-	8	437	c.412G>A	c.(412-414)GAG>AAG	p.E138K	ABO_uc010naf.1_5'UTR|ABO_uc011mcz.1_5'UTR|ABO_uc010nag.1_5'UTR	NM_020469	NP_065202	P16442	BGAT_HUMAN	ABO blood group (alpha	138	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	fucosylgalactoside 3-alpha-galactosyltransferase activity|glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity|metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(145;5.82e-06)|Epithelial(140;3.45e-05)		AAGTGCTTCTCCGCCGTCTCC	0.692													24	66					0	0	1	0	0
C9orf96	169436	broad.mit.edu	37	9	136268834	136268834	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136268834G>A	uc004cdk.2	+	15	1546	c.1485G>A	c.(1483-1485)GTG>GTA	p.V495V	C9orf96_uc004cdl.2_RNA	NM_153710	NP_714921	Q8NE28	SGK71_HUMAN	hypothetical protein LOC169436	495							ATP binding|protein kinase activity			stomach(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GTATCATTGTGAACAAGGCCC	0.617													8	19					0	0	1	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136320418	136320418	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136320418C>T	uc004cdv.3	+	25	3705	c.3261C>T	c.(3259-3261)TCC>TCT	p.S1087S	ADAMTS13_uc004cdp.3_Silent_p.S314S|ADAMTS13_uc004cdt.1_Silent_p.S1087S|ADAMTS13_uc004cdu.1_Silent_p.S1056S|ADAMTS13_uc004cdw.3_Silent_p.S1087S|ADAMTS13_uc004cdx.3_Silent_p.S1056S|ADAMTS13_uc004cdz.3_Silent_p.S757S|ADAMTS13_uc004cea.1_5'Flank|ADAMTS13_uc004ceb.3_5'Flank	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1087	TSP type-1 8.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GCTCTGTTTCCTGTGGGGATG	0.507													20	167					0	0	1	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136320692	136320692	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136320692C>T	uc004cdv.3	+	25	3979	c.3535C>T	c.(3535-3537)CTG>TTG	p.L1179L	ADAMTS13_uc004cdp.3_Intron|ADAMTS13_uc004cdt.1_Intron|ADAMTS13_uc004cdu.1_Intron|ADAMTS13_uc004cdw.3_Intron|ADAMTS13_uc004cdx.3_Intron|ADAMTS13_uc004cdz.3_Silent_p.L849L|ADAMTS13_uc004cea.1_5'Flank|ADAMTS13_uc004ceb.3_5'Flank	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1179					cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		TCGGCGGCTCCTGCCCGGGCC	0.672													23	77					0	0	1	0	0
TMEM8C	389827	broad.mit.edu	37	9	136380695	136380695	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136380695G>A	uc011mdk.1	-	4	434	c.434C>T	c.(433-435)CCA>CTA	p.P145L		NM_001080483	NP_001073952	A6NI61	TMM8C_HUMAN	transmembrane protein 8C	145						integral to membrane					0						GCTCTTGTCTGGGTACAGGCC	0.597													30	48					0	0	1	0	0
ADAMTSL2	9719	broad.mit.edu	37	9	136401900	136401900	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136401900G>A	uc011mdl.1	+	2	623	c.66G>A	c.(64-66)GGG>GGA	p.G22G	ADAMTSL2_uc004cei.2_Silent_p.G22G	NM_001145320	NP_001138792	Q86TH1	ATL2_HUMAN	ADAMTS-like 2 precursor	22					negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;9.31e-08)|Epithelial(140;6.62e-07)|all cancers(34;7.74e-06)		TTGTAGCTGGGGACACAGTGT	0.602													17	64					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136529031	136529031	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136529031T>A	uc004cep.3	-	21	2871	c.2737A>T	c.(2737-2739)AGG>TGG	p.R913W	SARDH_uc004ceo.2_Missense_Mutation_p.R913W|SARDH_uc011mdn.1_Missense_Mutation_p.R913W|SARDH_uc011mdo.1_Missense_Mutation_p.R745W|SARDH_uc004cen.2_Missense_Mutation_p.R363W	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	913					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CCCTTCACCCTCTTGTTGTTG	0.592													35	121					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136536720	136536721	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136536720_136536721CC>TT	uc004cep.3	-	18	2396_2397	c.2262_2263GG>AA	c.(2260-2265)GCGGGT>GCAAGT	p.G755S	SARDH_uc004ceo.2_Missense_Mutation_p.G755S|SARDH_uc011mdn.1_Missense_Mutation_p.G755S|SARDH_uc011mdo.1_Missense_Mutation_p.G587S|SARDH_uc004cen.2_Missense_Mutation_p.G183S	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	755					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		TGCTTGGCACCCGCGGCCATCA	0.663													4	14					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136568062	136568062	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136568062G>A	uc004cep.3	-	13	1778	c.1644C>T	c.(1642-1644)TTC>TTT	p.F548F	SARDH_uc004ceo.2_Silent_p.F548F|SARDH_uc011mdn.1_Silent_p.F548F|SARDH_uc011mdo.1_Silent_p.F380F|SARDH_uc004cen.2_5'UTR	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	548					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GCGGGAAGGCGAAGGTGTACT	0.662													4	14					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136584084	136584084	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136584084C>T	uc004cep.3	-	7	1130	c.996G>A	c.(994-996)GAG>GAA	p.E332E	SARDH_uc004ceo.2_Silent_p.E332E|SARDH_uc011mdn.1_Silent_p.E332E|SARDH_uc011mdo.1_Silent_p.E164E	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	332					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		TGGGGTTGGCCTCATAGCCAC	0.572													25	49					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136597593	136597593	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136597593G>A	uc004cep.3	-	3	596	c.462C>T	c.(460-462)TTC>TTT	p.F154F	SARDH_uc004ceo.2_Silent_p.F154F|SARDH_uc011mdn.1_Silent_p.F154F|SARDH_uc011mdo.1_5'UTR	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	154					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		TGGACGCGATGAAGAGGCCCC	0.672													66	129					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136597649	136597649	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136597649C>T	uc004cep.3	-	3	540	c.406G>A	c.(406-408)GAG>AAG	p.E136K	SARDH_uc004ceo.2_Missense_Mutation_p.E136K|SARDH_uc011mdn.1_Missense_Mutation_p.E136K|SARDH_uc011mdo.1_5'UTR	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	136					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		TCCTCCAGCTCCCGGCTCACC	0.672													33	148					0	0	1	0	0
VAV2	7410	broad.mit.edu	37	9	136661588	136661589	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:136661588_136661589GG>AA	uc004ces.2	-	11	1040_1041	c.994_995CC>TT	c.(994-996)CCC>TTC	p.P332F	VAV2_uc004cer.2_Missense_Mutation_p.P327F	NM_001134398	NP_001127870	P52735	VAV2_HUMAN	vav 2 guanine nucleotide exchange factor isoform	332	DH.				angiogenesis|apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	metal ion binding|Rho guanyl-nucleotide exchange factor activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(145;3.9e-07)|Epithelial(140;2.07e-06)|all cancers(34;9.39e-06)		CCTCTGCATGGGGACCACCAGC	0.609													7	27					0	0	1	0	0
WDR5	11091	broad.mit.edu	37	9	137007496	137007496	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137007496C>T	uc004cey.2	+	6	567	c.396C>T	c.(394-396)GTC>GTT	p.V132V	WDR5_uc004cez.2_Silent_p.V132V	NM_017588	NP_060058	P61964	WDR5_HUMAN	WD repeat domain 5	132	WD 3.				histone H3 acetylation|histone H3-K4 methylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ada2/Gcn5/Ada3 transcription activator complex|MLL1 complex|Set1C/COMPASS complex	protein binding				0		Myeloproliferative disorder(178;0.0255)|Medulloblastoma(224;0.123)		Epithelial(140;6.61e-13)|all cancers(34;5.66e-12)|OV - Ovarian serous cystadenocarcinoma(145;3.93e-08)|GBM - Glioblastoma multiforme(294;0.00326)|READ - Rectum adenocarcinoma(205;0.154)		GTAATTATGTCTTTTGCTGCA	0.468													30	74					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137593095	137593095	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137593095C>T	uc004cfe.2	+	4	952	c.570C>T	c.(568-570)TTC>TTT	p.F190F		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	190	TSP N-terminal.|Laminin G-like.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCACCAAATTCCTCGACCGCA	0.512													7	28					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137623485	137623485	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137623485G>A	uc004cfe.2	+	8	1690	c.1308G>A	c.(1306-1308)GCG>GCA	p.A436A		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	436	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GAATGCCGGCGAACCAGGATA	0.562													14	97					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137642657	137642657	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137642657G>A	uc004cfe.2	+	13	1973	c.1591G>A	c.(1591-1593)GAT>AAT	p.D531N		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	531	Interrupted collagenous region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGGTGGCGGCGATGCGGGCTC	0.637													10	46					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137655578	137655578	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137655578G>A	uc004cfe.2	+	20	2411	c.2029G>A	c.(2029-2031)GAG>AAG	p.E677K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	677	Triple-helical region.			E -> Q (in Ref. 4; AA sequence).|E -> K (in Ref. 1; BAA14323).	axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GCTGCCTGGGGAGCCCGTAAG	0.592													10	82					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137658856	137658856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137658856G>A	uc004cfe.2	+	23	2526	c.2144G>A	c.(2143-2145)GGA>GAA	p.G715E		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	715	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GGTCCCCAGGGAGAGCCTGGC	0.647													5	19					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137681046	137681046	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137681046G>A	uc004cfe.2	+	32	3074	c.2692G>A	c.(2692-2694)GGC>AGC	p.G898S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	898	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TGGAGAGAAGGGCGGCAGGGT	0.572													15	22					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137702101	137702101	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137702101G>A	uc004cfe.2	+	44	3857	c.3475G>A	c.(3475-3477)GGA>AGA	p.G1159R		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1159	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CTTCCCCTAGGGAGAGATCGG	0.567													20	70					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137707461	137707461	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137707461G>A	uc004cfe.2	+	51	4436	c.4054G>A	c.(4054-4056)GAG>AAG	p.E1352K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1352	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCCCCCCGGAGAGCCTGGCCC	0.622													5	23					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137712030	137712030	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137712030C>T	uc004cfe.2	+	58	4897	c.4515C>T	c.(4513-4515)CTC>CTT	p.L1505L	uc004cff.2_RNA	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1505	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		ACCGTGGTCTCCCTGGCCCCC	0.602													20	53					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137716508	137716508	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137716508C>T	uc004cfe.2	+	62	5143	c.4761C>T	c.(4759-4761)ATC>ATT	p.I1587I	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1587	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GGCGGAACATCGACGCCAGCC	0.642													13	41					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137726994	137726994	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137726994G>A	uc004cfe.2	+	65	5696	c.5314G>A	c.(5314-5316)GAG>AAG	p.E1772K	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1772	Fibrillar collagen NC1.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CTCCAACGACGAGGAGATGTC	0.657													14	41					0	0	1	0	0
FCN2	2220	broad.mit.edu	37	9	137777102	137777102	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137777102G>A	uc004cfg.1	+	5	329	c.319G>A	c.(319-321)GAC>AAC	p.D107N	FCN2_uc004cfh.1_Missense_Mutation_p.D69N	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	107	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		TACCTGCAAGGACCTGCTAGA	0.667													12	35					0	0	1	0	0
FCN2	2220	broad.mit.edu	37	9	137777709	137777709	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137777709G>A	uc004cfg.1	+	6	535	c.525G>A	c.(523-525)CTG>CTA	p.L175L	FCN2_uc004cfh.1_Silent_p.L137L	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	175	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		AGTTCTGGCTGGGGAATGACA	0.672													20	42					0	0	1	0	0
FCN1	2219	broad.mit.edu	37	9	137809704	137809704	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:137809704C>T	uc004cfi.2	-	1	106	c.14G>A	c.(13-15)GGA>GAA	p.G5E		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	5					opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		CATGGTGGCTCCACTCAGCTC	0.582													21	62					0	0	1	0	0
OLFM1	10439	broad.mit.edu	37	9	138011385	138011385	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138011385C>T	uc010nar.2	+	6	1135	c.819C>T	c.(817-819)TTC>TTT	p.F273F	OLFM1_uc004cfl.3_Silent_p.F255F|OLFM1_uc004cfn.3_Silent_p.F24F	NM_014279	NP_055094	Q99784	NOE1_HUMAN	olfactomedin related ER localized protein	273	Olfactomedin-like.				nervous system development	endoplasmic reticulum lumen	protein binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		ACAACCGCTTCGTACGTGAGT	0.567													27	60					0	0	1	0	0
OLFM1	10439	broad.mit.edu	37	9	138011723	138011723	+	Missense_Mutation	SNP	C	T	T	rs1049289		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138011723C>T	uc010nar.2	+	6	1473	c.1157C>T	c.(1156-1158)TCC>TTC	p.S386F	OLFM1_uc004cfl.3_Missense_Mutation_p.S368F|OLFM1_uc004cfn.3_Missense_Mutation_p.S137F	NM_014279	NP_055094	Q99784	NOE1_HUMAN	olfactomedin related ER localized protein	386	Olfactomedin-like.				nervous system development	endoplasmic reticulum lumen	protein binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		GACCCCGTGTCCCTGCAGACC	0.637													16	35					0	0	1	0	0
LCN1	3933	broad.mit.edu	37	9	138415806	138415807	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138415806_138415807GG>AA	uc004cfz.1	+	4	431_432	c.373_374GG>AA	c.(373-375)GGG>AAG	p.G125K	LCN1_uc004cga.1_Missense_Mutation_p.G125K	NM_002297	NP_002288	P31025	LCN1_HUMAN	lipocalin 1 precursor	125					proteolysis|response to stimulus|sensory perception of taste	extracellular region	cysteine-type endopeptidase inhibitor activity|transporter activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.54e-08)|Epithelial(140;5.25e-08)|all cancers(34;9.27e-07)|READ - Rectum adenocarcinoma(205;0.155)		CGAGCTGCACGGGAAGCCGGTC	0.639													11	42					0	0	1	0	0
OBP2A	29991	broad.mit.edu	37	9	138438674	138438674	+	Silent	SNP	G	A	A	rs142617413	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138438674G>A	uc004cgb.2	+	2	165	c.123G>A	c.(121-123)CCG>CCA	p.P41P	OBP2A_uc004cgc.2_Silent_p.P41P|OBP2A_uc010nau.2_RNA|OBP2A_uc010nav.2_Intron	NM_014582	NP_055397	Q9NY56	OBP2A_HUMAN	odorant binding protein 2A precursor	41					response to stimulus|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		AGGACTTTCCGGAGGACAGGA	0.602													9	19					0	0	1	0	0
PAEP	5047	broad.mit.edu	37	9	138454150	138454150	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138454150C>T	uc004cge.1	+	2	151	c.107C>T	c.(106-108)ACC>ATC	p.T36I	PAEP_uc010naw.1_Intron|PAEP_uc010naz.2_RNA|PAEP_uc010nay.2_Missense_Mutation_p.T36I|PAEP_uc010nba.1_Missense_Mutation_p.T36I|PAEP_uc004cgd.1_Missense_Mutation_p.T36I|PAEP_uc011mdp.1_Intron|PAEP_uc004cgg.1_Missense_Mutation_p.T36I|PAEP_uc010nbc.1_Missense_Mutation_p.T36I|PAEP_uc004cgf.1_Missense_Mutation_p.T36I	NM_001018049	NP_001018059	P09466	PAEP_HUMAN	glycodelin precursor	36				T -> K (in Ref. 7; AA sequence).|GTW -> VTA (in Ref. 9; AA sequence).	multicellular organismal development	extracellular region	binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		TTGGCAGGGACCTGGCACTCC	0.652													5	39					0	0	1	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516120	138516120	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138516120G>A	uc010nbd.1	-	5	908	c.654C>T	c.(652-654)ATC>ATT	p.I218I		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	218	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		GTCCAAACGGGATGCAAGCTG	0.493													18	100					0	0	1	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516385	138516385	+	Missense_Mutation	SNP	C	T	T	rs138281407	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138516385C>T	uc010nbd.1	-	5	643	c.389G>A	c.(388-390)CGA>CAA	p.R130Q		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	130	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		TTTGAACGTTCGAAGAGGACT	0.537													5	47					0	0	1	0	0
GLT6D1	360203	broad.mit.edu	37	9	138518016	138518016	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138518016G>A	uc010nbd.1	-	4	410	c.156C>T	c.(154-156)CTC>CTT	p.L52L		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	52	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		GGACAGGAGCGAGCCAGTCTG	0.532													16	66					0	0	1	0	0
LCN9	392399	broad.mit.edu	37	9	138555222	138555222	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138555222G>A	uc004cgk.1	+	1	55	c.55G>A	c.(55-57)GAT>AAT	p.D19N		NM_001001676	NP_001001676	Q8WX39	LCN9_HUMAN	lipocalin 9	19						extracellular region	pheromone binding|transporter activity			large_intestine(2)	2		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;3.43e-07)|Epithelial(140;1.97e-06)|all cancers(34;6.1e-05)		CCAGGAGTTCGATCCCCACAC	0.627													14	56					0	0	1	0	0
LCN9	392399	broad.mit.edu	37	9	138556088	138556088	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138556088C>T	uc004cgk.1	+	2	177	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_001001676	NP_001001676	Q8WX39	LCN9_HUMAN	lipocalin 9	59						extracellular region	pheromone binding|transporter activity			large_intestine(2)	2		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;3.43e-07)|Epithelial(140;1.97e-06)|all cancers(34;6.1e-05)		TGAGGGTCTTCGTCCGGAATA	0.468													18	75					0	0	1	0	0
LCN9	392399	broad.mit.edu	37	9	138557709	138557709	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138557709C>T	uc004cgk.1	+	6	478	c.478C>T	c.(478-480)CCC>TCC	p.P160S		NM_001001676	NP_001001676	Q8WX39	LCN9_HUMAN	lipocalin 9	160						extracellular region	pheromone binding|transporter activity			large_intestine(2)	2		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;3.43e-07)|Epithelial(140;1.97e-06)|all cancers(34;6.1e-05)		CCTTCCAGATCCCTGCTACTC	0.692													6	19					0	0	1	0	0
SOHLH1	402381	broad.mit.edu	37	9	138586200	138586200	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138586200G>A	uc004cgl.2	-	7	1040	c.979C>T	c.(979-981)CCC>TCC	p.P327S	SOHLH1_uc010nbe.2_Intron	NM_001012415	NP_001012415	Q5JUK2	SOLH1_HUMAN	spermatogenesis and oogenesis specific basic	327					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			breast(1)|central_nervous_system(1)	2		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.66e-07)|Epithelial(140;1.11e-06)|all cancers(34;6.45e-05)		GCTTACGCGGGGGGACCAGCC	0.647													12	34					0	0	1	0	0
SOHLH1	402381	broad.mit.edu	37	9	138587048	138587048	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138587048G>A	uc004cgl.2	-	6	784	c.723C>T	c.(721-723)CCC>CCT	p.P241P	SOHLH1_uc010nbe.2_Silent_p.P241P	NM_001012415	NP_001012415	Q5JUK2	SOLH1_HUMAN	spermatogenesis and oogenesis specific basic	241					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			breast(1)|central_nervous_system(1)	2		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.66e-07)|Epithelial(140;1.11e-06)|all cancers(34;6.45e-05)		GCCAGGACAGGGGTGGCCTCA	0.692													4	13					0	0	1	0	0
KCNT1	57582	broad.mit.edu	37	9	138651571	138651571	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138651571C>T	uc011mdq.1	+	11	975	c.901C>T	c.(901-903)CTC>TTC	p.L301F	KCNT1_uc011mdr.1_Missense_Mutation_p.L128F|KCNT1_uc010nbf.2_Missense_Mutation_p.L256F|KCNT1_uc004cgo.1_Missense_Mutation_p.L50F	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	301						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		GAACCTGTCCCTCCTGACCTC	0.667													11	41					0	0	1	0	0
KCNT1	57582	broad.mit.edu	37	9	138657008	138657008	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138657008C>T	uc011mdq.1	+	12	1241	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	KCNT1_uc011mdr.1_Silent_p.F216F|KCNT1_uc010nbf.2_Silent_p.F344F|KCNT1_uc004cgo.1_Silent_p.F138F	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	389						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		TCATGGACTTCCTGAACGAGT	0.647													45	85					0	0	1	0	0
KCNT1	57582	broad.mit.edu	37	9	138683650	138683650	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138683650G>A	uc011mdq.1	+	30	3584	c.3510G>A	c.(3508-3510)ATG>ATA	p.M1170I	KCNT1_uc011mdr.1_Missense_Mutation_p.M1018I|KCNT1_uc010nbf.2_Missense_Mutation_p.M1146I	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	1170						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		CAGACGAGATGAACGACCACC	0.647													30	103					0	0	1	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713209	138713209	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138713209G>A	uc004cgr.3	-	11	3298	c.3298C>T	c.(3298-3300)CGT>TGT	p.R1100C	CAMSAP1_uc004cgq.3_Missense_Mutation_p.R990C|CAMSAP1_uc010nbg.2_Missense_Mutation_p.R822C	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1100						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		CTTCCGGAACGGGAATTCCGG	0.642													15	37					0	0	1	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713428	138713428	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138713428G>A	uc004cgr.3	-	11	3079	c.3079C>T	c.(3079-3081)CTT>TTT	p.L1027F	CAMSAP1_uc004cgq.3_Missense_Mutation_p.L917F|CAMSAP1_uc010nbg.2_Missense_Mutation_p.L749F	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1027						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GTTTCGTTAAGCTTCTCGATG	0.542													18	34					0	0	1	0	0
NACC2	138151	broad.mit.edu	37	9	138903368	138903368	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:138903368G>A	uc004cgw.2	-	6	1914	c.1758C>T	c.(1756-1758)ACC>ACT	p.T586T	NACC2_uc010nbh.2_Silent_p.T225T|uc004cgv.3_5'Flank	NM_144653	NP_653254	Q96BF6	NACC2_HUMAN	BTB (POZ) domain containing 14A	586					negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|protein homooligomerization	nuclear body					0						CCGCTTACAAGGTCCCTGCAT	0.423													30	48					0	0	1	0	0
LHX3	8022	broad.mit.edu	37	9	139089520	139089520	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139089520G>A	uc004cha.2	-	6	942	c.845C>T	c.(844-846)GCC>GTC	p.A282V	LHX3_uc004cgz.2_Missense_Mutation_p.A287V	NM_178138	NP_835258	Q9UBR4	LHX3_HUMAN	LIM homeobox protein 3 isoform a	282					inner ear development|organ morphogenesis|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;8.43e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.26e-07)		CCGGCCCAAGGCCTGGGTGGG	0.677													4	15					0	0	1	0	0
LHX3	8022	broad.mit.edu	37	9	139089576	139089576	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139089576C>T	uc004cha.2	-	6	886	c.789G>A	c.(787-789)TTG>TTA	p.L263L	LHX3_uc004cgz.2_Silent_p.L268L	NM_178138	NP_835258	Q9UBR4	LHX3_HUMAN	LIM homeobox protein 3 isoform a	263					inner ear development|organ morphogenesis|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;8.43e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.26e-07)		CCATTTCCGCCAAGGAAGGCT	0.687													8	23					0	0	1	0	0
QSOX2	169714	broad.mit.edu	37	9	139113660	139113660	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139113660G>A	uc010nbi.2	-	6	841	c.803C>T	c.(802-804)TCG>TTG	p.S268L		NM_181701	NP_859052	Q6ZRP7	QSOX2_HUMAN	quiescin Q6 sulfhydryl oxidase 2 precursor	268					cell redox homeostasis	extracellular region|integral to membrane|nuclear membrane|plasma membrane	thiol oxidase activity			ovary(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;7.78e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.55e-07)		CAATCCATGCGACCCATTTGG	0.557													27	58					0	0	1	0	0
QSOX2	169714	broad.mit.edu	37	9	139113755	139113755	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139113755G>A	uc010nbi.2	-	6	746	c.708C>T	c.(706-708)ATC>ATT	p.I236I		NM_181701	NP_859052	Q6ZRP7	QSOX2_HUMAN	quiescin Q6 sulfhydryl oxidase 2 precursor	236					cell redox homeostasis	extracellular region|integral to membrane|nuclear membrane|plasma membrane	thiol oxidase activity			ovary(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;7.78e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.55e-07)		GGGTCACCACGATGCTTTCAT	0.512													27	74					0	0	1	0	0
CARD9	64170	broad.mit.edu	37	9	139264207	139264207	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139264207C>T	uc004chg.3	-	7	1238	c.1072G>A	c.(1072-1074)GAC>AAC	p.D358N	CARD9_uc011mdw.1_Missense_Mutation_p.D358N|CARD9_uc011mdx.1_Missense_Mutation_p.D254N	NM_052813	NP_434700	Q9H257	CARD9_HUMAN	caspase recruitment domain protein 9 isoform 1	358	Potential.				positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JNK cascade|positive regulation of stress-activated MAPK cascade|regulation of apoptosis	cytoplasm	CARD domain binding|protein homodimerization activity			pancreas(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;4.58e-06)|Epithelial(140;5.65e-06)		CCCACCTGGTCCCGCTCAATG	0.612													4	5					0	0	1	0	0
SNAPC4	6621	broad.mit.edu	37	9	139274303	139274303	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139274303G>A	uc004chh.2	-	20	2522	c.2513C>T	c.(2512-2514)GCC>GTC	p.A838V		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	838					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		GGTGCTCTGGGCACTTGAGGA	0.602													5	14					0	0	1	0	0
PMPCA	23203	broad.mit.edu	37	9	139313499	139313499	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139313499C>T	uc004chl.2	+	11	1209	c.1204C>T	c.(1204-1206)CGA>TGA	p.R402*	PMPCA_uc010nbl.2_Nonsense_Mutation_p.R302*|PMPCA_uc011mdz.1_Nonsense_Mutation_p.R271*|PMPCA_uc004chm.1_Nonsense_Mutation_p.R152*|PMPCA_uc004chn.1_5'UTR	NM_015160	NP_055975	Q10713	MPPA_HUMAN	peptidase (mitochondrial processing) alpha	402					proteolysis	mitochondrial inner membrane|mitochondrial matrix	metalloendopeptidase activity|zinc ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;9.3e-06)|Epithelial(140;1.15e-05)		TTCGCAGGTTCGAGAAATGGT	0.567													18	96					0	0	1	0	0
SEC16A	9919	broad.mit.edu	37	9	139370186	139370186	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139370186G>A	uc004chx.2	-	3	2191	c.1882C>T	c.(1882-1884)CGC>TGC	p.R628C	SEC16A_uc004chv.3_Missense_Mutation_p.R255C|SEC16A_uc004chw.2_Missense_Mutation_p.R628C|SEC16A_uc010nbn.2_Missense_Mutation_p.R628C|SEC16A_uc010nbo.1_Missense_Mutation_p.R628C	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	450					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		ACGTTGGCGCGATCTGCCTCA	0.537													3	9					0	0	1	0	0
NOTCH1	4851	broad.mit.edu	37	9	139390781	139390781	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139390781G>A	uc004chz.2	-	34	7410	c.7410C>T	c.(7408-7410)TCC>TCT	p.S2470S		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	2470	Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GGACCAGCGAGGATGGCAGCG	0.697			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			5	8					0	0	1	0	0
AGPAT2	10555	broad.mit.edu	37	9	139571924	139571924	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139571924G>A	uc004cii.1	-	2	369	c.267C>T	c.(265-267)GCC>GCT	p.A89A	AGPAT2_uc004cij.1_Silent_p.A89A	NM_006412	NP_006403	O15120	PLCB_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 2	89					phosphatidic acid biosynthetic process|positive regulation of cytokine production|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0	all_cancers(76;0.0893)|all_epithelial(76;0.231)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.87e-06)|Epithelial(140;0.000123)		CACAGGGACGGGCCTCCTGCA	0.652													19	51					0	0	1	0	0
LCN6	158062	broad.mit.edu	37	9	139641983	139641983	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139641983G>A	uc004ciy.2	-	2	168	c.123C>T	c.(121-123)GCC>GCT	p.A41A	LCN10_uc004ciw.2_RNA|uc004ciz.1_RNA	NM_198946	NP_945184	P62502	LCN6_HUMAN	lipocalin 6 precursor	41					single fertilization	extracellular region	binding				0	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.32e-06)|Epithelial(140;7.83e-05)		TTTCCCGGGAGGCCACCGCAA	0.498													16	48					0	0	1	0	0
TRAF2	7186	broad.mit.edu	37	9	139815662	139815663	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139815662_139815663CC>TT	uc010nbu.2	+	10	1306_1307	c.1133_1134CC>TT	c.(1132-1134)TCC>TTT	p.S378F	TRAF2_uc004cjv.2_Missense_Mutation_p.S378F|TRAF2_uc011mek.1_Missense_Mutation_p.S367F|TRAF2_uc010nbw.2_Missense_Mutation_p.S353F	NM_021138	NP_066961	Q12933	TRAF2_HUMAN	TNF receptor-associated factor 2	378	MATH.				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|activation of pro-apoptotic gene products|cellular protein complex assembly|induction of apoptosis by extracellular signals|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|protein autoubiquitination|protein homotrimerization|protein K63-linked ubiquitination|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane	CD40 receptor binding|enzyme binding|protein binding|signal transducer activity|sphingolipid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.229)	OV - Ovarian serous cystadenocarcinoma(145;4.48e-06)|Epithelial(140;9.55e-06)		GCCATCTTCTCCCCAGGTGTGG	0.599													16	41					0	0	1	0	0
LCN12	286256	broad.mit.edu	37	9	139847361	139847361	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139847361C>T	uc004ckb.2	+	2	144	c.132C>T	c.(130-132)TTC>TTT	p.F44F	LCN12_uc004ckc.2_Silent_p.F44F	NM_178536	NP_848631	Q6JVE5	LCN12_HUMAN	lipocalcin 12 precursor	44					lipid metabolic process	extracellular region	binding|transporter activity				0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;7.8e-06)|Epithelial(140;0.000106)		GGGAATGGTTCGTCCTGGGCC	0.672													61	130					0	0	1	0	0
PTGDS	5730	broad.mit.edu	37	9	139873732	139873732	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139873732C>T	uc004cke.2	+	3	387	c.312C>T	c.(310-312)TCC>TCT	p.S104S	PTGDS_uc004ckd.2_RNA|PTGDS_uc004ckf.2_RNA	NM_000954	NP_000945	P41222	PTGDS_HUMAN	prostaglandin D2 synthase, brain	104					prostaglandin biosynthetic process|regulation of circadian sleep/wake cycle, sleep	Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum	fatty acid binding|prostaglandin-D synthase activity|retinoid binding|transporter activity			ovary(1)	1	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CCCTCGGCTCCTACAGCTACC	0.701													28	78					0	0	1	0	0
PTGDS	5730	broad.mit.edu	37	9	139873743	139873744	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139873743_139873744GG>AA	uc004cke.2	+	3	398_399	c.323_324GG>AA	c.(322-324)CGG>CAA	p.R108Q	PTGDS_uc004ckd.2_RNA|PTGDS_uc004ckf.2_RNA	NM_000954	NP_000945	P41222	PTGDS_HUMAN	prostaglandin D2 synthase, brain	108					prostaglandin biosynthetic process|regulation of circadian sleep/wake cycle, sleep	Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum	fatty acid binding|prostaglandin-D synthase activity|retinoid binding|transporter activity			ovary(1)	1	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		TACAGCTACCGGAGTCCCCGTG	0.688													23	62					0	0	1	0	0
PTGDS	5730	broad.mit.edu	37	9	139874654	139874654	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139874654G>A	uc004cke.2	+	5	543	c.468G>A	c.(466-468)AGG>AGA	p.R156R	PTGDS_uc004ckd.2_RNA|PTGDS_uc004ckf.2_RNA|LCNL1_uc004ckh.1_5'Flank	NM_000954	NP_000945	P41222	PTGDS_HUMAN	prostaglandin D2 synthase, brain	156					prostaglandin biosynthetic process|regulation of circadian sleep/wake cycle, sleep	Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum	fatty acid binding|prostaglandin-D synthase activity|retinoid binding|transporter activity			ovary(1)	1	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		AGACCCCCAGGGCTGAGTTAA	0.632													13	39					0	0	1	0	0
ABCA2	20	broad.mit.edu	37	9	139905714	139905714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139905714G>A	uc011mem.1	-	37	5992	c.5844C>T	c.(5842-5844)TTC>TTT	p.F1948F	ABCA2_uc011mel.1_Silent_p.F1949F|ABCA2_uc004ckl.1_Silent_p.F1879F|ABCA2_uc004ckm.1_Silent_p.F1979F	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1948					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		TGTAGTTGGGGAAAATGAGGA	0.617													5	36					0	0	1	0	0
ABCA2	20	broad.mit.edu	37	9	139907193	139907193	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139907193G>A	uc011mem.1	-	30	5197	c.5049C>T	c.(5047-5049)CTC>CTT	p.L1683L	ABCA2_uc011mel.1_Silent_p.L1684L|ABCA2_uc004ckl.1_Silent_p.L1614L|ABCA2_uc004ckm.1_Silent_p.L1714L|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1683					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CGGAGGTGAAGAGCAGGTACT	0.672													14	49					0	0	1	0	0
ABCA2	20	broad.mit.edu	37	9	139907985	139907985	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139907985G>A	uc011mem.1	-	28	4623	c.4475C>T	c.(4474-4476)TCC>TTC	p.S1492F	ABCA2_uc011mel.1_Missense_Mutation_p.S1493F|ABCA2_uc004ckl.1_Missense_Mutation_p.S1423F|ABCA2_uc004ckm.1_Missense_Mutation_p.S1523F|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1492					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GTGGTACTGGGAAGGTGACAG	0.687													4	12					0	0	1	0	0
ABCA2	20	broad.mit.edu	37	9	139909458	139909458	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139909458G>A	uc011mem.1	-	24	3934	c.3786C>T	c.(3784-3786)GCC>GCT	p.A1262A	ABCA2_uc011mel.1_Silent_p.A1263A|ABCA2_uc004ckl.1_Silent_p.A1193A|ABCA2_uc004ckm.1_Silent_p.A1293A|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1262					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GCAGGCAGGAGGCCACATGCT	0.667													9	34					0	0	1	0	0
ABCA2	20	broad.mit.edu	37	9	139909534	139909534	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139909534G>A	uc011mem.1	-	24	3858	c.3710C>T	c.(3709-3711)TCC>TTC	p.S1237F	ABCA2_uc011mel.1_Missense_Mutation_p.S1238F|ABCA2_uc004ckl.1_Missense_Mutation_p.S1168F|ABCA2_uc004ckm.1_Missense_Mutation_p.S1268F|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1237					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		TGGGGGGCTGGATGCCAGCCC	0.642													16	31					0	0	1	0	0
C9orf139	401563	broad.mit.edu	37	9	139929438	139929438	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139929438G>A	uc004ckp.1	+	3	2019	c.505G>A	c.(505-507)GGG>AGG	p.G169R	FUT7_uc004ckq.2_5'Flank	NM_207511	NP_997394	Q6ZV77	CI139_HUMAN	hypothetical protein LOC401563	169											0	all_cancers(76;0.0893)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.99e-05)|Epithelial(140;0.000493)		GGAAAGAAAAGGGCATGAGTC	0.622													13	114					0	0	1	0	0
ENTPD2	954	broad.mit.edu	37	9	139944953	139944953	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139944953G>A	uc004ckw.1	-	6	868	c.812C>T	c.(811-813)TCC>TTC	p.S271F	ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Missense_Mutation_p.S271F	NM_203468	NP_982293	Q9Y5L3	ENTP2_HUMAN	ectonucleoside triphosphate diphosphohydrolase 2	271	Extracellular (Potential).					integral to membrane	ATP binding				0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CACTTGGGTGGAAAAGCCCCT	0.642											OREG0019627	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	22					0	0	1	0	0
ENTPD2	954	broad.mit.edu	37	9	139944958	139944958	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139944958G>A	uc004ckw.1	-	6	863	c.807C>T	c.(805-807)GGC>GGT	p.G269G	ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Silent_p.G269G	NM_203468	NP_982293	Q9Y5L3	ENTP2_HUMAN	ectonucleoside triphosphate diphosphohydrolase 2	269	Extracellular (Potential).					integral to membrane	ATP binding				0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GGGTGGAAAAGCCCCTCGGCC	0.642											OREG0019627	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	22					0	0	1	0	0
ENTPD2	954	broad.mit.edu	37	9	139945765	139945765	+	Silent	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139945765G>T	uc004ckw.1	-	4	500	c.444C>A	c.(442-444)ACC>ACA	p.T148T	ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Silent_p.T148T	NM_203468	NP_982293	Q9Y5L3	ENTP2_HUMAN	ectonucleoside triphosphate diphosphohydrolase 2	148	Extracellular (Potential).					integral to membrane	ATP binding				0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		AGGGGTACTGGGTCAGTGTGT	0.582													24	60					3.73988e-18	3.75924e-18	1	1	0
C9orf140	89958	broad.mit.edu	37	9	139960772	139960772	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139960772G>A	uc011men.1	-	2	742	c.626C>T	c.(625-627)CCC>CTC	p.P209L		NM_178448	NP_848543	Q86UD0	CI140_HUMAN	tumor specificity and mitosis phase-dependent	209						cytoplasm|nucleus				skin(1)	1	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;3.02e-05)|Epithelial(140;0.000499)		TCGGGCACGGGGAGCCCGCCG	0.701													4	19					0	0	1	0	0
MAN1B1	11253	broad.mit.edu	37	9	139983393	139983393	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139983393C>T	uc004cld.2	+	3	436	c.401C>T	c.(400-402)CCC>CTC	p.P134L	MAN1B1_uc004clc.2_Missense_Mutation_p.P35L|MAN1B1_uc011meo.1_Missense_Mutation_p.P35L|MAN1B1_uc011mep.1_Missense_Mutation_p.P134L|MAN1B1_uc010ncc.2_RNA|LOC100289341_uc004clb.3_5'Flank	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	134	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		GCAAATCCACCCGTCTTACCA	0.473													35	101					0	0	1	0	0
DPP7	29952	broad.mit.edu	37	9	140006426	140006426	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140006426G>A	uc004clh.2	-	10	1136	c.1106C>T	c.(1105-1107)CCG>CTG	p.P369L		NM_013379	NP_037511	Q9UHL4	DPP2_HUMAN	dipeptidyl peptidase 7 preproprotein	369						cytoplasmic membrane-bounded vesicle|extracellular region|lysosome	aminopeptidase activity|protein binding|serine-type peptidase activity				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;4.25e-05)|Epithelial(140;0.000633)		GGGCAGGTCCGGGAACATATC	0.667													6	40					0	0	1	0	0
GRIN1	2902	broad.mit.edu	37	9	140043562	140043562	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140043562G>A	uc004clk.2	+	4	1001	c.671_splice	c.e4+1	p.S224_splice	GRIN1_uc004cli.1_Splice_Site|GRIN1_uc004clj.1_Splice_Site_p.S221_splice|GRIN1_uc004cll.2_Splice_Site_p.S224_splice|GRIN1_uc004clm.2_Splice_Site_p.S224_splice|GRIN1_uc004cln.2_Splice_Site_p.S242_splice|GRIN1_uc004clo.2_Splice_Site_p.S242_splice	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor						ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	TTTCTGCCAGGTGAGGCTGGG	0.602													7	9					0	0	1	0	0
GRIN1	2902	broad.mit.edu	37	9	140055526	140055526	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140055526G>A	uc004clk.2	+	9	1546	c.1216G>A	c.(1216-1218)GAG>AAG	p.E406K	GRIN1_uc004cli.1_Missense_Mutation_p.E81K|GRIN1_uc004clj.1_Missense_Mutation_p.E403K|GRIN1_uc004cll.2_Missense_Mutation_p.E406K|GRIN1_uc004clm.2_Missense_Mutation_p.E406K|GRIN1_uc004cln.2_Missense_Mutation_p.E424K|GRIN1_uc004clo.2_Missense_Mutation_p.E424K	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	406	Extracellular (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	GATCCACCAGGAGCCCTTCGT	0.627													14	48					0	0	1	0	0
TMEM203	94107	broad.mit.edu	37	9	140099732	140099732	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140099732G>A	uc004clv.2	-	1	359	c.135C>T	c.(133-135)TCC>TCT	p.S45S	NDOR1_uc004clx.2_5'Flank|NDOR1_uc004clw.2_5'Flank|NDOR1_uc011mes.1_5'Flank|NDOR1_uc004cly.2_5'Flank	NM_053045	NP_444273	Q969S6	TM203_HUMAN	transmembrane protein 203	45						integral to membrane					0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		CGTTCCACCAGGAGAGGCCCG	0.622													5	22					0	0	1	0	0
NDOR1	27158	broad.mit.edu	37	9	140109069	140109069	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140109069C>T	uc004clw.2	+	7	881	c.770C>T	c.(769-771)GCC>GTC	p.A257V	NDOR1_uc004clx.2_Missense_Mutation_p.A257V|NDOR1_uc011mes.1_Missense_Mutation_p.A257V|NDOR1_uc004cly.2_Missense_Mutation_p.A223V	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	257	FAD-binding FR-type.				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		AACTCGGCTGCCCATGTCCAG	0.662													11	39					0	0	1	0	0
C9orf173	441476	broad.mit.edu	37	9	140146307	140146307	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140146307G>A	uc004cmk.1	+	2	237	c.225G>A	c.(223-225)CAG>CAA	p.Q75Q	C9orf173_uc004cmj.1_Silent_p.Q76Q|C9orf173_uc011meu.1_RNA|C9orf173_uc010ncd.1_RNA|C9orf173_uc011mev.1_Silent_p.Q75Q|C9orf173_uc004cml.1_Silent_p.Q75Q			Q8N7X2	CI173_HUMAN	SubName: Full=LOC441476 protein;	76										pancreas(1)	1						GCACCCCCCAGGAGTCCCTGC	0.647													4	8					0	0	1	0	0
COBRA1	25920	broad.mit.edu	37	9	140151279	140151279	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140151279C>T	uc004cmm.3	+	4	573	c.370C>T	c.(370-372)CCG>TCG	p.P124S		NM_015456	NP_056271	Q8WX92	NELFB_HUMAN	cofactor of BRCA1	124					negative regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleoplasm	protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.137)	OV - Ovarian serous cystadenocarcinoma(145;9.42e-05)|Epithelial(140;0.000766)		CATGTAGGTTCCGGAGAAAAA	0.582													18	19					0	0	1	0	0
EXD3	54932	broad.mit.edu	37	9	140267448	140267448	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140267448G>A	uc004cmp.2	-	5	567	c.371C>T	c.(370-372)CCA>CTA	p.P124L	C9orf167_uc011mew.1_Intron|EXD3_uc010ncg.1_Missense_Mutation_p.P63L|EXD3_uc004cmr.2_Missense_Mutation_p.P63L|EXD3_uc004cms.2_Missense_Mutation_p.P124L	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	124					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						GCTGGCCAGTGGTGCCGCAAG	0.642													11	57					0	0	1	0	0
ENTPD8	377841	broad.mit.edu	37	9	140331432	140331432	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140331432C>T	uc004cmw.2	-	5	628	c.444G>A	c.(442-444)CAG>CAA	p.Q148Q	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Silent_p.Q148Q|ENTPD8_uc004cmy.2_3'UTR	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	148	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		GGCCCAGGACCTGGGTGACTG	0.662													12	71					0	0	1	0	0
NELF	26012	broad.mit.edu	37	9	140344095	140344095	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140344095G>A	uc004cna.2	-	15	1683	c.1451C>T	c.(1450-1452)CCT>CTT	p.P484L	C9orf167_uc011mew.1_Intron|NELF_uc011mex.1_Missense_Mutation_p.P281L|NELF_uc010nci.2_Missense_Mutation_p.P228L|NELF_uc011mey.1_RNA|NELF_uc011mez.1_Missense_Mutation_p.P461L|NELF_uc004cmz.2_Missense_Mutation_p.P482L|NELF_uc004cnc.2_Missense_Mutation_p.P459L|NELF_uc004cnb.2_Missense_Mutation_p.P454L	NM_001130969	NP_001124441	Q6X4W1	NELF_HUMAN	nasal embryonic LHRH factor isoform a	484						nucleus|plasma membrane					0	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000222)|Epithelial(140;0.000888)		GACCCTATAAGGAGTCATGAG	0.637													6	13					0	0	1	0	0
NELF	26012	broad.mit.edu	37	9	140347008	140347008	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140347008G>A	uc004cna.2	-	11	1394	c.1162C>T	c.(1162-1164)CTT>TTT	p.L388F	C9orf167_uc011mew.1_Intron|NELF_uc011mex.1_Missense_Mutation_p.L185F|NELF_uc010nci.2_Missense_Mutation_p.L132F|NELF_uc011mey.1_RNA|NELF_uc011mez.1_Missense_Mutation_p.L365F|NELF_uc004cmz.2_Missense_Mutation_p.L386F|NELF_uc004cnc.2_Missense_Mutation_p.L363F|NELF_uc004cnb.2_Missense_Mutation_p.L358F	NM_001130969	NP_001124441	Q6X4W1	NELF_HUMAN	nasal embryonic LHRH factor isoform a	388						nucleus|plasma membrane					0	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000222)|Epithelial(140;0.000888)		CACATACCAAGGATGTCCTCG	0.657													8	40					0	0	1	0	0
PNPLA7	375775	broad.mit.edu	37	9	140356050	140356050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140356050G>A	uc004cnf.2	-	32	4041	c.3704C>T	c.(3703-3705)TCC>TTC	p.S1235F	C9orf167_uc011mew.1_Intron|PNPLA7_uc004cnd.1_Missense_Mutation_p.S482F|PNPLA7_uc004cne.1_Missense_Mutation_p.S501F|PNPLA7_uc011mfa.1_Missense_Mutation_p.S643F|PNPLA7_uc010ncj.1_Missense_Mutation_p.S1260F|NELF_uc004cna.2_5'Flank|NELF_uc011mez.1_5'Flank|NELF_uc004cmz.2_5'Flank|NELF_uc004cnc.2_5'Flank|NELF_uc004cnb.2_5'Flank	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	1235					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GTCCGTGAAGGAGGCGTTGGG	0.652													8	33					0	0	1	0	0
PNPLA7	375775	broad.mit.edu	37	9	140396114	140396114	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140396114C>T	uc004cnf.2	-	14	1801	c.1464G>A	c.(1462-1464)AGG>AGA	p.R488R	C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Silent_p.R513R	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	488	cNMP 2.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GGTCTCCCTGCCTTGACACCA	0.637													4	29					0	0	1	0	0
PNPLA7	375775	broad.mit.edu	37	9	140414484	140414484	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140414484G>A	uc004cnf.2	-	10	1231	c.894C>T	c.(892-894)GCC>GCT	p.A298A	PNPLA7_uc011mfa.1_Silent_p.A29A|PNPLA7_uc010ncj.1_Silent_p.A323A	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	298					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		CGAGAGGGATGGCCTGGCTCT	0.597													75	161					0	0	1	0	0
PNPLA7	375775	broad.mit.edu	37	9	140416159	140416159	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140416159C>T	uc004cnf.2	-	9	1148	c.811G>A	c.(811-813)GTG>ATG	p.V271M	PNPLA7_uc011mfa.1_Missense_Mutation_p.V2M|PNPLA7_uc010ncj.1_Missense_Mutation_p.V296M	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	271	cNMP 1.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		TGCAGCCGCACCATGATGATC	0.617													14	45					0	0	1	0	0
PNPLA7	375775	broad.mit.edu	37	9	140438247	140438247	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140438247G>A	uc004cnf.2	-	4	556	c.219C>T	c.(217-219)ACC>ACT	p.T73T	PNPLA7_uc010ncj.1_Silent_p.T98T	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	73					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		TCTCCACAAGGGTGTTGGGGA	0.602													25	44					0	0	1	0	0
WDR85	92715	broad.mit.edu	37	9	140468793	140468793	+	Silent	SNP	G	A	A	rs140349182	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140468793G>A	uc004cnk.1	-	5	665	c.507C>T	c.(505-507)TCC>TCT	p.S169S	WDR85_uc004cnl.1_5'UTR|WDR85_uc004cnm.1_5'UTR|WDR85_uc004cnn.1_Intron	NM_138778	NP_620133	Q9BTV6	WDR85_HUMAN	WD repeat domain 85	169					peptidyl-diphthamide biosynthetic process from peptidyl-histidine						0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.00029)|Epithelial(140;0.000509)		GCTGCCCTGTGGAGTCACTGC	0.567													9	109					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140777335	140777335	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140777335G>A	uc004cog.2	+	3	675	c.530G>A	c.(529-531)GGG>GAG	p.G177E	uc004cof.1_RNA	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	177	Helical; Name=S3 of repeat I; (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GTCCTCACAGGGTAGGCAAGC	0.622													37	221					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140846790	140846790	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140846790C>T	uc004cog.2	+	7	1176	c.1031C>T	c.(1030-1032)TCC>TTC	p.S344F		NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	344	Helical; Name=S6 of repeat I; (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	ATCATCGGCTCCTTCTTCATG	0.582													7	60					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140907670	140907670	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140907670G>A	uc004cog.2	+	18	2395	c.2250G>A	c.(2248-2250)GCG>GCA	p.A750A	CACNA1B_uc011mfd.1_Silent_p.A281A	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	750	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TGTCTGCCGCGAACATCTCCA	0.592													8	29					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140938301	140938301	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140938301C>T	uc004cog.2	+	21	3507	c.3362C>T	c.(3361-3363)CCC>CTC	p.P1121L	CACNA1B_uc011mfd.1_Missense_Mutation_p.P651L|CACNA1B_uc004coi.2_Missense_Mutation_p.P331L	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1121	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	AGGAGCGGCCCCCGGCCTATC	0.602													74	158					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140952615	140952615	+	Silent	SNP	C	T	T	rs35538393		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140952615C>T	uc004cog.2	+	28	4366	c.4221C>T	c.(4219-4221)TTC>TTT	p.F1407F	CACNA1B_uc011mfd.1_Silent_p.F937F|CACNA1B_uc004coi.2_Silent_p.F621F	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1407	Helical; Name=S6 of repeat III; (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CCTTCTTCTTCGTCAACATCT	0.537													36	86					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140953566	140953566	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140953566G>A	uc004cog.2	+	30	4654	c.4509G>A	c.(4507-4509)CTG>CTA	p.L1503L	CACNA1B_uc011mfd.1_Silent_p.L1033L|CACNA1B_uc004coi.2_Silent_p.L717L	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1503	IV.|Extracellular (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	AGCTGATGCTGAAATGCCTGA	0.542													6	18					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140953626	140953626	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140953626C>T	uc004cog.2	+	30	4714	c.4569C>T	c.(4567-4569)ATC>ATT	p.I1523I	CACNA1B_uc011mfd.1_Silent_p.I1053I|CACNA1B_uc004coi.2_Silent_p.I737I	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1523	Helical; Name=S2 of repeat IV; (Potential).|IV.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TGAAGATCATCGCCTTTGGGG	0.502													4	12					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140953629	140953629	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140953629C>T	uc004cog.2	+	30	4717	c.4572C>T	c.(4570-4572)GCC>GCT	p.A1524A	CACNA1B_uc011mfd.1_Silent_p.A1054A|CACNA1B_uc004coi.2_Silent_p.A738A	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1524	Helical; Name=S2 of repeat IV; (Potential).|IV.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	AGATCATCGCCTTTGGGGTGC	0.498													4	11					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140991028	140991028	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:140991028C>T	uc004cog.2	+	36	5332	c.5187C>T	c.(5185-5187)TTC>TTT	p.F1729F	CACNA1B_uc004coi.2_Silent_p.F941F|CACNA1B_uc004cok.1_RNA|CACNA1B_uc010ncp.1_Intron	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1729	EF-hand.|Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TGGATGAGTTCATCCGGGTCT	0.557													18	47					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	141006949	141006949	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:141006949C>T	uc004cog.2	+	39	5673	c.5528C>T	c.(5527-5529)CCC>CTC	p.P1843L	CACNA1B_uc004coi.2_Missense_Mutation_p.P1055L|CACNA1B_uc004cok.1_RNA|CACNA1B_uc010ncp.1_Missense_Mutation_p.P123L	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1843	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CTGGTACCACCCCATAAGCGT	0.577													15	28					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	141010029	141010029	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:141010029C>T	uc004cog.2	+	41	5820	c.5675C>T	c.(5674-5676)CCT>CTT	p.P1892L	CACNA1B_uc004coi.2_Missense_Mutation_p.P1104L	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1892	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CTGTTCCACCCTCTGAAGGCC	0.607													29	103					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	141012408	141012408	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:141012408G>A	uc004cog.2	+	42	5933	c.5788G>A	c.(5788-5790)GAG>AAG	p.E1930K	CACNA1B_uc004coi.2_Missense_Mutation_p.E1142K	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1930	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	ACAAAACCAAGAGAGTGGCAT	0.567													4	22					0	0	1	0	0
PPP2R3B	28227	broad.mit.edu	37	X	295177	295177	+	Silent	SNP	G	A	A	rs148086983	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:295177G>A	uc004cpg.2	-	13	1854	c.1653C>T	c.(1651-1653)TTC>TTT	p.F551F	PPP2R3B_uc004cpf.2_Silent_p.F152F	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	551					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AGGGCGCCTCGAAGAAGGGCC	0.711													13	26					0	0	1	0	0
SHOX	6473	broad.mit.edu	37	X	595460	595460	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:595460C>T	uc004cph.1	+	3	1076	c.385C>T	c.(385-387)CTG>TTG	p.L129L	SHOX_uc004cpi.2_Silent_p.L129L	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	129	Homeobox.				skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCTGGAGCAGCTGAACGAGCT	0.637													16	23					0	0	1	0	0
CRLF2	64109	broad.mit.edu	37	X	1321317	1321317	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1321317G>A	uc004cpm.1	-	4		c.438C>T						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CCTCATAGAGGAGATCCCCGT	0.612			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								17	80					0	0	1	0	0
CRLF2	64109	broad.mit.edu	37	X	1325381	1325382	+	RNA	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1325381_1325382GG>AA	uc004cpm.1	-	3		c.293_294CC>TT						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CATTCCTGATGGAGAAATAGAG	0.51			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								19	98					0	0	1	0	0
CRLF2	64109	broad.mit.edu	37	X	1331458	1331458	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1331458C>T	uc004cpm.1	-	1		c.73G>A						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CCTGCTCCTCCTTGCCCCAAA	0.488			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								8	34					0	0	1	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407740	1407740	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1407740C>T	uc010nct.2	+	7	754	c.432C>T	c.(430-432)GCC>GCT	p.A144A	CSF2RA_uc011mhb.1_Silent_p.A144A|CSF2RA_uc004cpq.2_Silent_p.A144A|CSF2RA_uc004cpn.2_Silent_p.A144A|CSF2RA_uc004cpo.2_Silent_p.A144A|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Silent_p.A11A|CSF2RA_uc004cpp.2_Silent_p.A144A|CSF2RA_uc010ncv.2_Silent_p.A144A|CSF2RA_uc004cpr.2_Silent_p.A144A	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	144	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GTCCGACGGCCCCCCGTGACG	0.473													31	152					0	0	1	0	0
CSF2RA	1438	broad.mit.edu	37	X	1428303	1428303	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1428303G>A	uc010nct.2	+	14	1456	c.1134G>A	c.(1132-1134)TGG>TGA	p.W378*	CSF2RA_uc004cpq.2_3'UTR|CSF2RA_uc004cpn.2_Nonsense_Mutation_p.W378*|CSF2RA_uc004cpo.2_Nonsense_Mutation_p.W378*|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Nonsense_Mutation_p.W245*|CSF2RA_uc004cpp.2_Missense_Mutation_p.G319R|CSF2RA_uc010ncv.2_Nonsense_Mutation_p.W412*|CSF2RA_uc004cpr.2_3'UTR	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	378	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AGATCATCTGGGAGGAATTCA	0.468													39	76					0	0	1	0	0
IL3RA	3563	broad.mit.edu	37	X	1499956	1499956	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1499956A>T	uc004cps.2	+	11	1370	c.1021A>T	c.(1021-1023)ATG>TTG	p.M341L	IL3RA_uc011mhd.1_Missense_Mutation_p.M263L	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor	341	Cytoplasmic (Potential).|Box 1 motif.					integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	CATCCCTCACATGAAAGACCC	0.507													95	207					0	0	1	0	0
P2RY8	286530	broad.mit.edu	37	X	1584424	1584424	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1584424C>T	uc004cpz.2	-	2	1276	c.1028G>A	c.(1027-1029)GGG>GAG	p.G343E		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	343	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCCCTCCATCCCTTCAGGGTG	0.711			T	CRLF2	B-ALL|Downs associated ALL								33	81					0	0	1	0	0
P2RY8	286530	broad.mit.edu	37	X	1584754	1584754	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1584754C>T	uc004cpz.2	-	2	946	c.698G>A	c.(697-699)AGG>AAG	p.R233K		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	233	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CACCGCGCGCCTCCGCTGCTC	0.662			T	CRLF2	B-ALL|Downs associated ALL								11	18					0	0	1	0	0
P2RY8	286530	broad.mit.edu	37	X	1584834	1584834	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1584834G>A	uc004cpz.2	-	2	866	c.618C>T	c.(616-618)TTC>TTT	p.F206F		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	206	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGGTGATCACGAACGGGATGA	0.647			T	CRLF2	B-ALL|Downs associated ALL								13	39					0	0	1	0	0
P2RY8	286530	broad.mit.edu	37	X	1584900	1584900	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1584900G>A	uc004cpz.2	-	2	800	c.552C>T	c.(550-552)CTC>CTT	p.L184L		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	184	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCACGCTGGGGAGCATCGTCC	0.627			T	CRLF2	B-ALL|Downs associated ALL								13	48					0	0	1	0	0
P2RY8	286530	broad.mit.edu	37	X	1585101	1585101	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1585101G>A	uc004cpz.2	-	2	599	c.351C>T	c.(349-351)ATC>ATT	p.I117I		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	117	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCTCCACGCTGATACAGGTCA	0.632			T	CRLF2	B-ALL|Downs associated ALL								6	18					0	0	1	0	0
ASMT	438	broad.mit.edu	37	X	1742181	1742181	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1742181G>A	uc004cqd.2	+	3	364	c.219G>A	c.(217-219)CTG>CTA	p.L73L	ASMT_uc010ncy.2_Silent_p.L73L|ASMT_uc004cqe.2_Silent_p.L73L	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	73					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TGAAGCTGCTGAAAGTGGAGA	0.557													10	37					0	0	1	0	0
ASMT	438	broad.mit.edu	37	X	1743171	1743171	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:1743171G>A	uc004cqd.2	+	4	399	c.254G>A	c.(253-255)CGA>CAA	p.R85Q	ASMT_uc010ncy.2_Missense_Mutation_p.R85Q|ASMT_uc004cqe.2_Missense_Mutation_p.R85Q	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	85					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCTTTCTATCGAAACACAGAG	0.547													76	194					0	0	1	0	0
ZBED1	9189	broad.mit.edu	37	X	2408546	2408546	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:2408546G>A	uc004cqg.2	-	2	416	c.215C>T	c.(214-216)CCC>CTC	p.P72L	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Missense_Mutation_p.P72L	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	72	BED-type.					nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GAATTCCTCGGGGTGGTTCTT	0.582													30	96					0	0	1	0	0
CD99	4267	broad.mit.edu	37	X	2632473	2632473	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:2632473C>T	uc004cqm.2	+	2	252	c.78C>T	c.(76-78)TTC>TTT	p.F26F	CD99_uc010nda.2_Silent_p.F26F|CD99_uc004cqn.2_RNA|CD99_uc004cqo.2_Silent_p.F26F	NM_002414	NP_002405	P14209	CD99_HUMAN	CD99 antigen isoform a precursor	26	Extracellular (Potential).				cell adhesion	cytoplasm|integral to plasma membrane				skin(1)	1						ATGGTGGTTTCGATTTATCCG	0.214													54	227					0	0	1	0	0
ARSH	347527	broad.mit.edu	37	X	2928182	2928182	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:2928182C>T	uc011mhj.1	+	2	204	c.204C>T	c.(202-204)CCC>CCT	p.P68P		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	68						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				GCCGGTACCCCATCAGATCAG	0.483													9	6					0	0	1	0	0
ARSH	347527	broad.mit.edu	37	X	2931166	2931166	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:2931166C>T	uc011mhj.1	+	3	293	c.293C>T	c.(292-294)ACT>ATT	p.T98I		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	98						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				AATGAAACGACTTTTGCCAAG	0.552													46	28					0	0	1	0	0
ARSH	347527	broad.mit.edu	37	X	2933011	2933011	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:2933011G>A	uc011mhj.1	+	4	341	c.341G>A	c.(340-342)GGC>GAC	p.G114D		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	114						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				TTACTTTTAGGCAAATGGCAC	0.453													5	11					0	0	1	0	0
ARSF	416	broad.mit.edu	37	X	3002618	3002618	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3002618C>T	uc004cre.1	+	6	962	c.741C>T	c.(739-741)CTC>CTT	p.L247L	ARSF_uc004crf.1_Silent_p.L247L	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	247						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACTGCCTCCTCATGCGGGGGC	0.507													36	25					0	0	1	0	0
ARSF	416	broad.mit.edu	37	X	3019165	3019165	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3019165G>A	uc004cre.1	+	8	1226	c.1005G>A	c.(1003-1005)AGG>AGA	p.R335R	ARSF_uc004crf.1_Silent_p.R335R	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	335						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TTGGCCTAAGGAACAACACCC	0.408													26	19					0	0	1	0	0
ARSF	416	broad.mit.edu	37	X	3030524	3030524	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3030524G>A	uc004cre.1	+	11	1921	c.1700G>A	c.(1699-1701)GGG>GAG	p.G567E	ARSF_uc004crf.1_Missense_Mutation_p.G567E	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	567						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCTTGCTGTGGGGTGTTCCCA	0.532													26	15					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3227866	3227866	+	Missense_Mutation	SNP	C	T	T	rs149129110		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3227866C>T	uc004crg.3	-	7	8535	c.8378G>A	c.(8377-8379)GGA>GAA	p.G2793E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2793	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGTCAGTGATCCCTGGGGGTG	0.502													25	14					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3228099	3228099	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3228099C>T	uc004crg.3	-	7	8302	c.8145G>A	c.(8143-8145)ACG>ACA	p.T2715T		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2715	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGCCGTACTCCGTCTCCATCC	0.617													28	22					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3228264	3228264	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3228264G>A	uc004crg.3	-	7	8137	c.7980C>T	c.(7978-7980)ACC>ACT	p.T2660T		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2660	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CCCCGGGAGGGGTGCAGGGGA	0.592													38	31					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3229530	3229530	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3229530C>T	uc004crg.3	-	7	6871	c.6714G>A	c.(6712-6714)GTG>GTA	p.V2238V		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2238	Ig-like C2-type 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTTTCATCACCACATCCACTT	0.527													39	34					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3236042	3236042	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3236042C>T	uc004crg.3	-	6	5837	c.5680G>A	c.(5680-5682)GCT>ACT	p.A1894T		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1894	Ig-like C2-type 3.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTCATAAGAGCTCCTGGAGAA	0.408													14	14					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3238441	3238441	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3238441C>T	uc004crg.3	-	5	5442	c.5285G>A	c.(5284-5286)AGA>AAA	p.R1762K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1762						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AATAACTTTTCTCTCTCTCAT	0.512													19	11					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3238445	3238445	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3238445C>T	uc004crg.3	-	5	5438	c.5281G>A	c.(5281-5283)GAG>AAG	p.E1761K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1761						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ACTTTTCTCTCTCTCATTACT	0.507													18	11					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3240417	3240417	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3240417C>T	uc004crg.3	-	5	3466	c.3309G>A	c.(3307-3309)ATG>ATA	p.M1103I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1103						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ACATACTGCTCATTATACCCA	0.483													27	15					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3240611	3240611	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3240611C>T	uc004crg.3	-	5	3272	c.3115G>A	c.(3115-3117)GAC>AAC	p.D1039N		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1039						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGGATGTTGTCTGTCAGTCCT	0.428													68	38					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3240871	3240871	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3240871G>A	uc004crg.3	-	5	3012	c.2855C>T	c.(2854-2856)TCA>TTA	p.S952L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	952						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGGCTCTGGTGACGATCCAAC	0.507													17	28					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3248121	3248121	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:3248121C>T	uc004crg.3	-	4	804	c.647G>A	c.(646-648)GGA>GAA	p.G216E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	216						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CCACGGATTTCCCTGCAAGTA	0.488													5	9					0	0	1	0	0
NLGN4X	57502	broad.mit.edu	37	X	6069208	6069208	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:6069208G>A	uc010ndh.2	-	2	801	c.300C>T	c.(298-300)ATC>ATT	p.I100I	NLGN4X_uc004crp.2_Silent_p.I100I|NLGN4X_uc004crq.2_Silent_p.I100I|NLGN4X_uc010ndi.2_Silent_p.I100I|NLGN4X_uc004crr.2_Silent_p.I100I|NLGN4X_uc010ndj.2_Silent_p.I100I	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	100	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						TAGTATTTCGGATGCCAGTCC	0.572													24	48					0	0	1	0	0
NLGN4X	57502	broad.mit.edu	37	X	6069466	6069466	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:6069466G>A	uc010ndh.2	-	2	543	c.42C>T	c.(40-42)TTC>TTT	p.F14F	NLGN4X_uc004crp.2_Silent_p.F14F|NLGN4X_uc004crq.2_Silent_p.F14F|NLGN4X_uc010ndi.2_Silent_p.F14F|NLGN4X_uc004crr.2_Silent_p.F14F|NLGN4X_uc010ndj.2_Silent_p.F14F	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	14					brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AGACCGGGGTGAACAACAAAG	0.512													22	21					0	0	1	0	0
HDHD1A	8226	broad.mit.edu	37	X	7023738	7023738	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:7023738G>A	uc004crv.2	-	2	280	c.203C>T	c.(202-204)CCG>CTG	p.P68L	HDHD1A_uc011mhm.1_Missense_Mutation_p.P91L|HDHD1A_uc011mhn.1_Intron|HDHD1A_uc010ndl.2_Missense_Mutation_p.P68L|HDHD1A_uc011mho.1_Missense_Mutation_p.P68L	NM_012080	NP_036212	Q08623	HDHD1_HUMAN	haloacid dehalogenase-like hydrolase domain	68					nucleotide metabolic process		metal ion binding|phosphatase activity				0		Colorectal(8;0.0114)|Medulloblastoma(8;0.184)				TTTGGACATCGGGAGCTGCAA	0.502													4	13					0	0	1	0	0
STS	412	broad.mit.edu	37	X	7171326	7171326	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:7171326C>T	uc004cry.3	+	2	346	c.101C>T	c.(100-102)GCT>GTT	p.A34V	STS_uc004crw.2_RNA|STS_uc011mhp.1_RNA|STS_uc004crx.1_RNA|STS_uc010ndm.1_RNA	NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	34	Lumenal.				female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	CTGGTGATGGCTGACGACCTC	0.502									Ichthyosis				15	33					0	0	1	0	0
VCX3B	425054	broad.mit.edu	37	X	8434313	8434313	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:8434313G>A	uc010ndo.2	+	4	847	c.540G>A	c.(538-540)ATG>ATA	p.M180I	VCX3B_uc004csd.1_Missense_Mutation_p.M160I	NM_001001888	NP_001001888	Q9H321	VCX3B_HUMAN	variable charge, X-linked 3B	180	8.|11 X 10 AA tandem repeats of L-S-Q-E-S- [EQ]-V-E-E-P.					nucleolus					0						AGAGCGAGATGGAAGAACCAC	0.562													41	195					0	0	1	0	0
SHROOM2	357	broad.mit.edu	37	X	9864270	9864270	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:9864270C>T	uc004csu.1	+	4	2412	c.2322C>T	c.(2320-2322)CTC>CTT	p.L774L		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	774					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				AGGTGGGCCTCACGAGGGGCT	0.587													15	8					0	0	1	0	0
SHROOM2	357	broad.mit.edu	37	X	9864374	9864374	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:9864374C>T	uc004csu.1	+	4	2516	c.2426C>T	c.(2425-2427)CCC>CTC	p.P809L		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	809					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				AAACCTGTTCCCCAGAGGCCT	0.602													31	13					0	0	1	0	0
CLCN4	1183	broad.mit.edu	37	X	10176100	10176100	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:10176100C>T	uc004csy.3	+	9	1289	c.859C>T	c.(859-861)CCC>TCC	p.P287S	CLCN4_uc011mid.1_Missense_Mutation_p.P193S	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	287						early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						TTACTACTTTCCCCTGAAGAC	0.498													66	99					0	0	1	0	0
CLCN4	1183	broad.mit.edu	37	X	10176240	10176240	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:10176240C>T	uc004csy.3	+	9	1429	c.999C>T	c.(997-999)TTC>TTT	p.F333F	CLCN4_uc011mid.1_Silent_p.F239F	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	333	Helical; (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						CTGAACTCTTCCCCTTCATCC	0.572													65	54					0	0	1	0	0
ARHGAP6	395	broad.mit.edu	37	X	11197563	11197563	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:11197563C>T	uc004cup.1	-	7	2212	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Missense_Mutation_p.E447K|ARHGAP6_uc004cum.1_Missense_Mutation_p.E244K|ARHGAP6_uc004cun.1_Missense_Mutation_p.E267K|ARHGAP6_uc010neb.1_Missense_Mutation_p.E269K|ARHGAP6_uc011mif.1_Missense_Mutation_p.E244K	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	447	Rho-GAP.				actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						CGGTCAAATTCCTCACGTAAC	0.517													16	25					0	0	1	0	0
AMELX	265	broad.mit.edu	37	X	11316365	11316365	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:11316365C>T	uc004cut.2	+	4	180	c.112C>T	c.(112-114)CCT>TCT	p.P38S	ARHGAP6_uc004cup.1_Intron|ARHGAP6_uc004cuo.1_Intron|ARHGAP6_uc004cur.1_Intron|ARHGAP6_uc004cun.1_Intron|ARHGAP6_uc011mif.1_Intron|AMELX_uc004cus.2_Missense_Mutation_p.P52S|AMELX_uc004cuu.2_Missense_Mutation_p.P22S	NM_001142	NP_001133	Q99217	AMELX_HUMAN	amelogenin (X chromosome) isoform 1 precursor	38					cell adhesion|cell proliferation|chondrocyte differentiation|enamel mineralization|epithelial to mesenchymal transition|ion homeostasis|odontogenesis of dentine-containing tooth|osteoblast differentiation|positive regulation of collagen biosynthetic process|positive regulation of tooth mineralization|signal transduction	proteinaceous extracellular matrix	cell surface binding|growth factor activity|hydroxyapatite binding|identical protein binding|structural constituent of tooth enamel				0						GGTGCTTACCCCTTTGAAGTG	0.353													68	117					0	0	1	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736281	12736281	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:12736281G>A	uc004cuz.1	+	16	3842	c.3336G>A	c.(3334-3336)GGG>GGA	p.G1112G	FRMPD4_uc011mij.1_Silent_p.G1104G	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1112					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						CAGCAACAGGGAAAACCTTTC	0.507													72	40					0	0	1	0	0
EGFL6	25975	broad.mit.edu	37	X	13613031	13613031	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:13613031G>A	uc004cvi.2	+	3	504	c.264G>A	c.(262-264)GGG>GGA	p.G88G	EGFL6_uc004cvj.2_Silent_p.G88G|EGFL6_uc011mik.1_5'UTR	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	88	EGF-like 1.				cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						GATACACCGGGAAAACCTGCA	0.473													16	14					0	0	1	0	0
ASB11	140456	broad.mit.edu	37	X	15307707	15307707	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:15307707C>T	uc004cwp.1	-	5	574	c.574G>A	c.(574-576)GAG>AAG	p.E192K	ASB11_uc004cwo.1_Missense_Mutation_p.E171K|ASB11_uc010nes.1_RNA|ASB11_uc010net.1_Missense_Mutation_p.E175K	NM_080873	NP_543149	Q8WXH4	ASB11_HUMAN	ankyrin repeat and SOCS box-containing protein	192					intracellular signal transduction					breast(2)|skin(1)	3	Hepatocellular(33;0.183)					TGAGGCACCTCATGGTCAATG	0.433													100	74					0	0	1	0	0
FIGF	2277	broad.mit.edu	37	X	15376196	15376196	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:15376196G>A	uc004cwt.1	-	3	930	c.421C>T	c.(421-423)CGA>TGA	p.R141*		NM_004469	NP_004460	O43915	VEGFD_HUMAN	vascular endothelial growth factor D	141					angiogenesis|cell differentiation|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of mast cell chemotaxis|vascular endothelial growth factor receptor signaling pathway	extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|platelet-derived growth factor receptor binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					CCACCACATCGGAACACGTTC	0.517													76	70					0	0	1	0	0
BMX	660	broad.mit.edu	37	X	15549483	15549483	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:15549483G>A	uc004cww.2	+	11	1160	c.972G>A	c.(970-972)TCG>TCA	p.S324S	BMX_uc004cwx.3_Silent_p.S324S|BMX_uc004cwy.3_Silent_p.S324S	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	324	SH2.				cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					TTAGAAATTCGAGCCAAGTGG	0.323													33	57					0	0	1	0	0
TMEM27	57393	broad.mit.edu	37	X	15657812	15657812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:15657812G>A	uc004cxc.1	-	5	641	c.385C>T	c.(385-387)CCT>TCT	p.P129S		NM_020665	NP_065716	Q9HBJ8	TMM27_HUMAN	transmembrane protein 27 precursor	129	Extracellular (Potential).				proteolysis	integral to membrane	metallopeptidase activity|peptidyl-dipeptidase activity			ovary(1)	1	Hepatocellular(33;0.183)					AGTGTGGAAGGGATTTTTAAA	0.348													58	52					0	0	1	0	0
GRPR	2925	broad.mit.edu	37	X	16168605	16168605	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:16168605C>T	uc004cxj.2	+	2	1244	c.591C>T	c.(589-591)GCC>GCT	p.A197A		NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor	197	Extracellular (Potential).				cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					TTAGCTGTGCCCCATACCCAC	0.488													72	43					0	0	1	0	0
GRPR	2925	broad.mit.edu	37	X	16170511	16170511	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:16170511C>T	uc004cxj.2	+	3	1551	c.898C>T	c.(898-900)CAC>TAC	p.H300Y		NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor	300	Helical; Name=7; (Potential).				cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					CTCCATGCTCCACTTTGTCAC	0.562													77	88					0	0	1	0	0
NHS	4810	broad.mit.edu	37	X	17743770	17743770	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:17743770G>A	uc004cxx.2	+	6	1819	c.1481G>A	c.(1480-1482)GGG>GAG	p.G494E	NHS_uc011mix.1_Missense_Mutation_p.G515E|NHS_uc004cxy.2_Missense_Mutation_p.G338E|NHS_uc004cxz.2_Missense_Mutation_p.G317E|NHS_uc004cya.2_Missense_Mutation_p.G217E	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	494						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					AATAGAGGTGGGGATGCTGAG	0.512													22	42					0	0	1	0	0
RAI2	10742	broad.mit.edu	37	X	17819535	17819535	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:17819535C>T	uc004cyf.2	-	3	1166	c.596G>A	c.(595-597)GGG>GAG	p.G199E	RAI2_uc004cyg.2_Missense_Mutation_p.G199E|RAI2_uc010nfa.2_Missense_Mutation_p.G199E|RAI2_uc004cyh.3_Missense_Mutation_p.G199E|RAI2_uc011miy.1_Missense_Mutation_p.G149E	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	199					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					GGGTGGGGGCCCGAGAGTGCC	0.647													18	20					0	0	1	0	0
RAI2	10742	broad.mit.edu	37	X	17819929	17819929	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:17819929C>T	uc004cyf.2	-	3	772	c.202G>A	c.(202-204)GGC>AGC	p.G68S	RAI2_uc004cyg.2_Missense_Mutation_p.G68S|RAI2_uc010nfa.2_Missense_Mutation_p.G68S|RAI2_uc004cyh.3_Missense_Mutation_p.G68S|RAI2_uc011miy.1_Intron	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	68					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					AGAGCCATGCCACTCTGAGAC	0.627													53	53					0	0	1	0	0
BEND2	139105	broad.mit.edu	37	X	18192171	18192171	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:18192171C>T	uc004cyj.3	-	12	2114	c.1960G>A	c.(1960-1962)GAG>AAG	p.E654K	BEND2_uc010nfb.2_Missense_Mutation_p.E563K	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	654										ovary(3)|kidney(1)|central_nervous_system(1)	5						CCAGGTTCCTCTGGATTATCA	0.313													20	13					0	0	1	0	0
CDKL5	6792	broad.mit.edu	37	X	18643341	18643341	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:18643341G>A	uc004cym.2	+	17	2723	c.2470G>A	c.(2470-2472)GAG>AAG	p.E824K	CDKL5_uc004cyn.2_Missense_Mutation_p.E824K	NM_003159	NP_003150	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	824					neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			ovary(2)|large_intestine(1)|stomach(1)|central_nervous_system(1)|skin(1)	6	Hepatocellular(33;0.183)					GTGGCGCCCCGAGAAGATCTC	0.547													66	42					0	0	1	0	0
PDHA1	5160	broad.mit.edu	37	X	19377730	19377730	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:19377730C>T	uc004czg.3	+	11	1277	c.1132C>T	c.(1132-1134)CGT>TGT	p.R378C	PDHA1_uc004czh.3_Missense_Mutation_p.R413C|PDHA1_uc011mjc.1_Missense_Mutation_p.R382C|PDHA1_uc011mjd.1_Missense_Mutation_p.R344C|PDHA1_uc010nfk.2_Missense_Mutation_p.R316C|PDHA1_uc010nfl.2_Missense_Mutation_p.R169C	NM_000284	NP_000275	P08559	ODPA_HUMAN	pyruvate dehydrogenase E1 alpha 1 precursor	378			R -> H (in X-LS; PDHE1 deficiency).		glycolysis|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	protein binding|pyruvate dehydrogenase (acetyl-transferring) activity			ovary(1)	1	Hepatocellular(33;0.183)				NADH(DB00157)	TTTTGAAGTTCGTGGTGCCAA	0.527													32	23					0	0	1	0	0
MAP3K15	389840	broad.mit.edu	37	X	19410551	19410551	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:19410551C>T	uc004czk.1	-	18	2297	c.660G>A	c.(658-660)ATG>ATA	p.M220I	MAP3K15_uc004czj.1_Missense_Mutation_p.M180I	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	745	Protein kinase.						ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					TCGGTTCCTTCATCGGCCCCC	0.433													64	34					0	0	1	0	0
SH3KBP1	30011	broad.mit.edu	37	X	19564139	19564139	+	Silent	SNP	G	A	A	rs148651015	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:19564139G>A	uc004czm.2	-	15	1840	c.1524C>T	c.(1522-1524)GAC>GAT	p.D508D	SH3KBP1_uc011mje.1_Silent_p.D247D|SH3KBP1_uc011mjf.1_Silent_p.D270D|SH3KBP1_uc004czl.2_Silent_p.D471D|SH3KBP1_uc010nfm.2_Intron	NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	508					apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						GACTTGGGGAGTCGAAGATAT	0.433													19	16					0	0	1	0	0
MAP7D2	256714	broad.mit.edu	37	X	20034416	20034416	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:20034416C>T	uc004czr.1	-	10	1336	c.1317G>A	c.(1315-1317)AAG>AAA	p.K439K	MAP7D2_uc004czq.1_Silent_p.K324K|MAP7D2_uc011mji.1_Silent_p.K387K|MAP7D2_uc010nfo.1_Silent_p.K480K|MAP7D2_uc011mjj.1_Silent_p.K394K	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	439										ovary(2)|breast(1)	3						cctcctctgcctttcttttca	0.159													14	10					0	0	1	0	0
MAP7D2	256714	broad.mit.edu	37	X	20081589	20081589	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:20081589C>T	uc004czr.1	-	3	334	c.315G>A	c.(313-315)GAG>GAA	p.E105E	MAP7D2_uc011mji.1_Silent_p.E61E|MAP7D2_uc010nfo.1_Silent_p.E105E|MAP7D2_uc011mjj.1_Silent_p.E105E|MAP7D2_uc004czs.1_Silent_p.E61E	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	105	Potential.									ovary(2)|breast(1)	3						TCTTTTGGTCCTCCCGCTGCC	0.577													31	21					0	0	1	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627648	21627648	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:21627648G>A	uc004czx.1	+	20	2641	c.2605G>A	c.(2605-2607)GAT>AAT	p.D869N	CNKSR2_uc004czw.2_Missense_Mutation_p.D869N|CNKSR2_uc011mjn.1_Missense_Mutation_p.D820N|CNKSR2_uc011mjo.1_Missense_Mutation_p.D839N|CNKSR2_uc004czy.2_Missense_Mutation_p.D461N	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	869					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						TGACCCACAGGATGACGTGCA	0.383													34	21					0	0	1	0	0
PHEX	5251	broad.mit.edu	37	X	22112104	22112104	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:22112104C>T	uc004dah.2	+	7	939	c.736C>T	c.(736-738)CGG>TGG	p.R246W	PHEX_uc011mjr.1_Missense_Mutation_p.R246W|PHEX_uc011mjs.1_Missense_Mutation_p.R149W	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	246	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						CTTACAGTATCGGGATGCCCT	0.398													69	36					0	0	1	0	0
PHEX	5251	broad.mit.edu	37	X	22263514	22263514	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:22263514C>T	uc004dah.2	+	21	2338	c.2135C>T	c.(2134-2136)CCC>CTC	p.P712L	PHEX_uc011mjr.1_Intron|PHEX_uc011mjs.1_Missense_Mutation_p.P615L	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	712					biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						GCTCACAGTCCCCCTCAGTTT	0.502													18	96					0	0	1	0	0
ZNF645	158506	broad.mit.edu	37	X	22292286	22292286	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:22292286G>A	uc004dai.1	+	1	1227	c.1178G>A	c.(1177-1179)TGG>TAG	p.W393*		NM_152577	NP_689790	Q8N7E2	ZN645_HUMAN	zinc finger protein 645	393						intracellular	zinc ion binding			lung(1)|pancreas(1)	2						TGGCCTGCATGGAAACGACTG	0.448													25	39					0	0	1	0	0
DDX53	168400	broad.mit.edu	37	X	23019033	23019033	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23019033C>T	uc004daj.2	+	1	947	c.859C>T	c.(859-861)CAA>TAA	p.Q287*		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	287	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						TCTTGATTCTCAACCAATATC	0.418													36	31					0	0	1	0	0
DDX53	168400	broad.mit.edu	37	X	23019757	23019757	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23019757C>T	uc004daj.2	+	1	1671	c.1583C>T	c.(1582-1584)TCC>TTC	p.S528F		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	528	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						GATATAGTATCCCGAGGTCTT	0.378													44	35					0	0	1	0	0
DDX53	168400	broad.mit.edu	37	X	23020050	23020050	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23020050G>A	uc004daj.2	+	1	1964	c.1876G>A	c.(1876-1878)GAG>AAG	p.E626K		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	626						nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						AAGACGCAAGGAGTTTTATTT	0.363													15	13					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23398129	23398129	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23398129G>A	uc004dal.3	+	2	781	c.773G>A	c.(772-774)AGG>AAG	p.R258K	PTCHD1_uc010nfu.1_Missense_Mutation_p.R258K	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	258					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						TCCTCACTGAGGGAAGATTTC	0.517													84	46					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23410682	23410682	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23410682C>T	uc004dal.3	+	3	1055	c.1047C>T	c.(1045-1047)TCC>TCT	p.S349S		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	349	SSD.				cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						AAATGTTATCCTCCTGGAGGA	0.418													28	11					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23410745	23410745	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23410745C>T	uc004dal.3	+	3	1118	c.1110C>T	c.(1108-1110)GAC>GAT	p.D370D		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	370	SSD.				cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						TCTATGCAGACTCCATGCTCT	0.468													17	42					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23410955	23410955	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23410955C>T	uc004dal.3	+	3	1328	c.1320C>T	c.(1318-1320)TTC>TTT	p.F440F		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	440					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						ATAGTATCTTCTGTAGAAAAG	0.468													60	29					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23411138	23411138	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23411138G>A	uc004dal.3	+	3	1511	c.1503G>A	c.(1501-1503)AAG>AAA	p.K501K		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	501					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						CCTATGTCAAGCCTTTTGTAG	0.428													81	57					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23411681	23411681	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23411681C>T	uc004dal.3	+	3	2054	c.2046C>T	c.(2044-2046)TTC>TTT	p.F682F		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	682					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						TCATCGTCTTCAATCCGTCCT	0.493													37	19					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23411707	23411707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23411707G>A	uc004dal.3	+	3	2080	c.2072G>A	c.(2071-2073)CGA>CAA	p.R691Q		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	691					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						TACATGGATCGATATGCCTCC	0.488													33	21					0	0	1	0	0
CXorf58	254158	broad.mit.edu	37	X	23928430	23928430	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:23928430C>T	uc004daz.1	+	2	355	c.11C>T	c.(10-12)TCC>TTC	p.S4F	APOO_uc004dax.2_5'Flank|APOO_uc004day.3_5'Flank|CXorf58_uc011mju.1_Missense_Mutation_p.S4F	NM_152761	NP_689974	Q96LI9	CX058_HUMAN	hypothetical protein LOC254158	4											0						ATGAATCGTTCCTCAAATGTA	0.348													6	17					0	0	1	0	0
FAM48B2	170067	broad.mit.edu	37	X	24329698	24329698	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:24329698C>T	uc011mjw.1	-	1	1735	c.1735G>A	c.(1735-1737)GAG>AAG	p.E579K		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	579											0						ACTGGGCCCTCCACGTTGGTG	0.662													7	3					0	0	1	0	0
FAM48B2	170067	broad.mit.edu	37	X	24330498	24330498	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:24330498G>A	uc011mjw.1	-	1	935	c.935C>T	c.(934-936)GCT>GTT	p.A312V		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	312											0						ATACCCTTTAGCAAGTTTCTC	0.532													75	51					0	0	1	0	0
PCYT1B	9468	broad.mit.edu	37	X	24608226	24608226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:24608226C>T	uc004dbi.2	-	4	633	c.400G>A	c.(400-402)GAA>AAA	p.E134K	PCYT1B_uc004dbk.3_Missense_Mutation_p.E134K|PCYT1B_uc004dbj.2_Missense_Mutation_p.E116K	NM_004845	NP_004836	Q9Y5K3	PCY1B_HUMAN	choline phosphate cytidylyltransferase 1 beta	134	Catalytic (Potential).					endoplasmic reticulum	choline-phosphate cytidylyltransferase activity				0					Choline(DB00122)	CTGAGAGCTTCGTATCTCTCG	0.443													23	14					0	0	1	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212638	26212638	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:26212638C>T	uc004dbr.2	+	2	824	c.675C>T	c.(673-675)GTC>GTT	p.V225V	MAGEB6_uc010ngc.1_Silent_p.V5V	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	225	MAGE.									ovary(3)	3						TGAAGTGTGTCCGCAGAGAGT	0.478													33	22					0	0	1	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212685	26212685	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:26212685C>T	uc004dbr.2	+	2	871	c.722C>T	c.(721-723)TCC>TTC	p.S241F	MAGEB6_uc010ngc.1_Missense_Mutation_p.S21F	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	241	MAGE.									ovary(3)	3						AACAGAACCTCCCAACATTTG	0.498													33	14					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27839493	27839493	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27839493G>A	uc004dbw.2	+	3	297	c.70G>A	c.(70-72)GAT>AAT	p.D24N		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	24										lung(1)|breast(1)|central_nervous_system(1)	3						AGGGCTGGAAGATTTGATAGA	0.512													15	23					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27839532	27839532	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27839532G>A	uc004dbw.2	+	3	336	c.109G>A	c.(109-111)GAA>AAA	p.E37K		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	37										lung(1)|breast(1)|central_nervous_system(1)	3						AGAGGAGGAAGAATCTCCCCC	0.517													19	17					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27839611	27839611	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27839611G>A	uc004dbw.2	+	3	415	c.188G>A	c.(187-189)GGA>GAA	p.G63E		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	63										lung(1)|breast(1)|central_nervous_system(1)	3						AATCCCCATGGACTTCGGGAA	0.498													6	8					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27840182	27840182	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27840182G>A	uc004dbw.2	+	3	986	c.759G>A	c.(757-759)GTG>GTA	p.V253V		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	253	MAGE.									lung(1)|breast(1)|central_nervous_system(1)	3						AAGATTTGGTGAAAGAAAATT	0.478													5	26					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27840247	27840247	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27840247G>A	uc004dbw.2	+	3	1051	c.824G>A	c.(823-825)TGG>TAG	p.W275*		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	275	MAGE.									lung(1)|breast(1)|central_nervous_system(1)	3						CAATTCCTATGGGGCCCAAGA	0.468													22	14					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27997756	27997756	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27997756C>T	uc004dbx.1	-	1	1811	c.1696G>A	c.(1696-1698)GAT>AAT	p.D566N		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	566										ovary(3)|skin(1)	4						GCTCCATGATCTCTCCAGCCG	0.512													12	69					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27997849	27997849	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27997849C>T	uc004dbx.1	-	1	1718	c.1603G>A	c.(1603-1605)GAC>AAC	p.D535N		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	535										ovary(3)|skin(1)	4						TTCAAGTTGTCTTCATCTCGC	0.483													43	23					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998538	27998538	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27998538G>A	uc004dbx.1	-	1	1029	c.914C>T	c.(913-915)TCA>TTA	p.S305L		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	305	WD 3.									ovary(3)|skin(1)	4						ATCTTCACCTGAAGTGAGGAA	0.483													21	25					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999223	27999223	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27999223C>T	uc004dbx.1	-	1	344	c.229G>A	c.(229-231)GAA>AAA	p.E77K		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	77	Glu-rich.									ovary(3)|skin(1)	4						TCGACGTCTTCACTTGAACTT	0.408													40	39					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999275	27999275	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:27999275G>A	uc004dbx.1	-	1	292	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	59										ovary(3)|skin(1)	4						CATCGTTCAGGAAACCACCAT	0.507													25	26					0	0	1	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29301113	29301113	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:29301113G>A	uc004dby.2	+	3	649	c.141G>A	c.(139-141)GAG>GAA	p.E47E		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	47	Ig-like C2-type 1.|Extracellular (Potential).				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						TGGTGGGAGAGCCTGTTCGAA	0.393													27	19					0	0	1	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29414516	29414516	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:29414516G>A	uc004dby.2	+	4	1012	c.504G>A	c.(502-504)GAG>GAA	p.E168E		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	168	Ig-like C2-type 2.|Extracellular (Potential).				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						GTGACATAGAGGATTTTCTAC	0.378													58	49					0	0	1	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29938169	29938169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:29938169G>A	uc004dby.2	+	8	1523	c.1015G>A	c.(1015-1017)GGA>AGA	p.G339R		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	339	Extracellular (Potential).|Ig-like C2-type 3.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						TGTTGAAAATGGAAATGGACG	0.433													42	25					0	0	1	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29973335	29973335	+	Nonsense_Mutation	SNP	C	T	T	rs144365564	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:29973335C>T	uc004dby.2	+	11	1997	c.1489C>T	c.(1489-1491)CGA>TGA	p.R497*		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	497	Cytoplasmic (Potential).|TIR.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						AACCAGACTTCGAAATATGCT	0.443													38	43					0	0	1	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29973592	29973592	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:29973592G>A	uc004dby.2	+	11	2254	c.1746G>A	c.(1744-1746)GGG>GGA	p.G582G		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	582	Cytoplasmic (Potential).|Interaction with NCS1.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						GGCCTTTTGGGGAGCTGCAGA	0.512													12	13					0	0	1	0	0
MAGEB3	4114	broad.mit.edu	37	X	30254404	30254404	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:30254404C>T	uc004dca.1	+	5	1100	c.363C>T	c.(361-363)TTC>TTT	p.F121F		NM_002365	NP_002356	O15480	MAGB3_HUMAN	melanoma antigen family B, 3	121	MAGE.										0						TGGTGCAGTTCCTGATGGAAA	0.393													20	19					0	0	1	0	0
MAGEB3	4114	broad.mit.edu	37	X	30254511	30254511	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:30254511C>T	uc004dca.1	+	5	1207	c.470C>T	c.(469-471)TCT>TTT	p.S157F		NM_002365	NP_002356	O15480	MAGB3_HUMAN	melanoma antigen family B, 3	157	MAGE.										0						AAAAAAGCTTCTTTCAACATG	0.373													52	20					0	0	1	0	0
MAGEB1	4112	broad.mit.edu	37	X	30268851	30268851	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:30268851G>A	uc004dcc.2	+	4	561	c.241G>A	c.(241-243)GAA>AAA	p.E81K	MAGEB1_uc004dcd.2_Missense_Mutation_p.E81K|MAGEB1_uc004dce.2_Missense_Mutation_p.E81K	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	81											0						CGAATCTGACGAAGGTGCCAA	0.557													3	5					0	0	1	0	0
MAGEB1	4112	broad.mit.edu	37	X	30269119	30269119	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:30269119C>T	uc004dcc.2	+	4	829	c.509C>T	c.(508-510)CCT>CTT	p.P170L	MAGEB1_uc004dcd.2_Missense_Mutation_p.P170L|MAGEB1_uc004dce.2_Missense_Mutation_p.P170L	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	170	MAGE.										0						GAAGACAACCCTAGTGGCCAC	0.493													10	8					0	0	1	0	0
MAGEB1	4112	broad.mit.edu	37	X	30269430	30269430	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:30269430C>T	uc004dcc.2	+	4	1140	c.820C>T	c.(820-822)CCG>TCG	p.P274S	MAGEB1_uc004dcd.2_Missense_Mutation_p.P274S|MAGEB1_uc004dce.2_Missense_Mutation_p.P274S	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	274	MAGE.										0						CCTATGGGGTCCGAGAGCCTA	0.507													46	29					0	0	1	0	0
MAGEB1	4112	broad.mit.edu	37	X	30269468	30269468	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:30269468C>T	uc004dcc.2	+	4	1178	c.858C>T	c.(856-858)CTC>CTT	p.L286L	MAGEB1_uc004dcd.2_Silent_p.L286L|MAGEB1_uc004dce.2_Silent_p.L286L	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	286	MAGE.										0						TGAAAGTCCTCGAGTTTTTGG	0.507													46	30					0	0	1	0	0
NR0B1	190	broad.mit.edu	37	X	30327363	30327363	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:30327363C>T	uc004dcf.3	-	1	133	c.118G>A	c.(118-120)GGC>AGC	p.G40S		NM_000475	NP_000466	P51843	NR0B1_HUMAN	nuclear receptor subfamily 0, group B, member 1	40	4 X 67 AA tandem repeats.|1.				adrenal gland development|hypothalamus development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of steroid hormone receptor signaling pathway|pituitary gland development|protein localization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid biosynthetic process	cytoplasm|membrane fraction|nucleoplasm|nucleus|polysomal ribosome	AF-2 domain binding|DNA hairpin binding|ligand-regulated transcription factor activity|protein domain specific binding|protein homodimerization activity|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|steroid hormone receptor binding|transcription corepressor activity|transcription factor binding			ovary(1)|lung(1)	2					Dexamethasone(DB01234)|Tretinoin(DB00755)	CACGAACAGCCCCAGCACTGA	0.657													4	7					0	0	1	0	0
DMD	1756	broad.mit.edu	37	X	31697609	31697609	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:31697609C>T	uc004dda.1	-	53	7999	c.7755G>A	c.(7753-7755)TGG>TGA	p.W2585*	DMD_uc004dcr.1_Nonsense_Mutation_p.W125*|DMD_uc004dcs.1_Nonsense_Mutation_p.W125*|DMD_uc004dct.1_Nonsense_Mutation_p.W125*|DMD_uc004dcu.1_Nonsense_Mutation_p.W125*|DMD_uc004dcv.1_Nonsense_Mutation_p.W125*|DMD_uc004dcw.2_Nonsense_Mutation_p.W1241*|DMD_uc004dcx.2_Nonsense_Mutation_p.W1244*|DMD_uc004dcz.2_Nonsense_Mutation_p.W2462*|DMD_uc004dcy.1_Nonsense_Mutation_p.W2581*|DMD_uc004ddb.1_Nonsense_Mutation_p.W2577*	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2585	Spectrin 18.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TAGCTTCCAGCCATTGTGTTG	0.443													20	16					0	0	1	0	0
DMD	1756	broad.mit.edu	37	X	32466746	32466746	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:32466746C>T	uc004dda.1	-	27	3857	c.3613G>A	c.(3613-3615)GAA>AAA	p.E1205K	DMD_uc004dcz.2_Missense_Mutation_p.E1082K|DMD_uc004dcy.1_Missense_Mutation_p.E1201K|DMD_uc004ddb.1_Missense_Mutation_p.E1197K|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1205	Spectrin 8.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TGGGCCTCTTCTTTAGCTCTC	0.348													25	26					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34148258	34148258	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34148258G>A	uc004ddg.2	-	1	2171	c.2138C>T	c.(2137-2139)CCT>CTT	p.P713L		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	713								p.P713T(1)		ovary(4)|central_nervous_system(1)	5						GTCAATCAAAGGTTCATCACT	0.423													53	37					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34148669	34148669	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34148669C>T	uc004ddg.2	-	1	1760	c.1727G>A	c.(1726-1728)CGA>CAA	p.R576Q		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	576										ovary(4)|central_nervous_system(1)	5						GTAGGATGCTCGAATCTTGGG	0.512													15	30					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34149046	34149046	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34149046C>T	uc004ddg.2	-	1	1383	c.1350G>A	c.(1348-1350)AAG>AAA	p.K450K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	450										ovary(4)|central_nervous_system(1)	5						CCTTAGTTTTCTTCACCCGGG	0.552													26	20					0	0	1	0	0
FAM47B	170062	broad.mit.edu	37	X	34961675	34961675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34961675C>T	uc004ddi.1	+	1	745	c.727C>T	c.(727-729)CGC>TGC	p.R243C		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	243	Pro-rich.									ovary(3)|breast(1)	4						TCCAGAGACTCGCGCATCTCA	0.647													7	58					0	0	1	0	0
FAM47B	170062	broad.mit.edu	37	X	34961754	34961754	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34961754C>T	uc004ddi.1	+	1	824	c.806C>T	c.(805-807)TCC>TTC	p.S269F		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	269	Pro-rich.									ovary(3)|breast(1)	4						ACTCTGGTGTCCAGTGTCCAC	0.627													47	38					0	0	1	0	0
FAM47B	170062	broad.mit.edu	37	X	34961846	34961846	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34961846C>T	uc004ddi.1	+	1	916	c.898C>T	c.(898-900)CCT>TCT	p.P300S		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	300	Pro-rich.									ovary(3)|breast(1)	4						CCCGGAGCCTCCTGAGACTGG	0.632													48	27					0	0	1	0	0
FAM47B	170062	broad.mit.edu	37	X	34961963	34961963	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34961963C>T	uc004ddi.1	+	1	1033	c.1015C>T	c.(1015-1017)CAT>TAT	p.H339Y		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	339										ovary(3)|breast(1)	4						TCCCAACACTCATCGGGTGTC	0.587													35	16					0	0	1	0	0
FAM47B	170062	broad.mit.edu	37	X	34961968	34961968	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34961968G>A	uc004ddi.1	+	1	1038	c.1020G>A	c.(1018-1020)CGG>CGA	p.R340R		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	340										ovary(3)|breast(1)	4						ACACTCATCGGGTGTCCAGTT	0.587													32	15					0	0	1	0	0
FAM47B	170062	broad.mit.edu	37	X	34962328	34962328	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34962328G>A	uc004ddi.1	+	1	1398	c.1380G>A	c.(1378-1380)TCG>TCA	p.S460S		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	460										ovary(3)|breast(1)	4						GACACACATCGAGAAAACTCC	0.468													14	76					0	0	1	0	0
FAM47B	170062	broad.mit.edu	37	X	34962775	34962775	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:34962775G>A	uc004ddi.1	+	1	1845	c.1827G>A	c.(1825-1827)AAG>AAA	p.K609K		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	609										ovary(3)|breast(1)	4						TCATTGAAAAGCTGTTTGCCA	0.438													89	70					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	35974126	35974126	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:35974126C>T	uc004ddj.2	+	8	1282	c.1223C>T	c.(1222-1224)CCT>CTT	p.P408L	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	408										large_intestine(1)|lung(1)|ovary(1)	3						ACAGGACTTCCTGTTTTACTA	0.373													35	61					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	35974178	35974178	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:35974178C>T	uc004ddj.2	+	8	1334	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	425										large_intestine(1)|lung(1)|ovary(1)	3						AACCTTGTTTCATGGGTGAAC	0.363													36	59					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	35993899	35993899	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:35993899G>A	uc004ddj.2	+	15	2641	c.2582G>A	c.(2581-2583)CGA>CAA	p.R861Q	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	861										large_intestine(1)|lung(1)|ovary(1)	3						TTGAGACCACGAGGCTTCTTC	0.433													54	84					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	36007457	36007457	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:36007457C>T	uc004ddj.2	+	16	2794	c.2735C>T	c.(2734-2736)TCA>TTA	p.S912L	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	912										large_intestine(1)|lung(1)|ovary(1)	3						GCATATTCCTCACTGGAATGT	0.353													18	27					0	0	1	0	0
CXorf59	286464	broad.mit.edu	37	X	36091363	36091363	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:36091363G>A	uc004ddk.1	+	4	484	c.298G>A	c.(298-300)GAA>AAA	p.E100K		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	100						integral to membrane				central_nervous_system(1)	1						TTCTCTTGAGGAAGGAACAAA	0.413													40	46					0	0	1	0	0
CXorf59	286464	broad.mit.edu	37	X	36091374	36091374	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:36091374G>A	uc004ddk.1	+	4	495	c.309G>A	c.(307-309)AAG>AAA	p.K103K		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	103						integral to membrane				central_nervous_system(1)	1						AAGGAACAAAGGCACACTACT	0.408													51	50					0	0	1	0	0
CXorf59	286464	broad.mit.edu	37	X	36122792	36122792	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:36122792G>A	uc004ddk.1	+	8	1215	c.1029G>A	c.(1027-1029)TGG>TGA	p.W343*		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	343						integral to membrane				central_nervous_system(1)	1						ATGTGATATGGAAAAACTGTC	0.234													7	34					0	0	1	0	0
CXorf59	286464	broad.mit.edu	37	X	36156555	36156555	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:36156555G>A	uc004ddk.1	+	10	1420	c.1234G>A	c.(1234-1236)GAA>AAA	p.E412K		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	412						integral to membrane				central_nervous_system(1)	1						TACTCTTTATGAAATTGACTT	0.289													27	14					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027077	37027077	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37027077C>T	uc004ddl.1	+	1	608	c.594C>T	c.(592-594)CTC>CTT	p.L198L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	198										ovary(3)	3						TGTCCTGTCTCCCCCCGGAGC	0.642													21	15					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027304	37027304	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37027304C>T	uc004ddl.1	+	1	835	c.821C>T	c.(820-822)CCT>CTT	p.P274L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	274										ovary(3)	3						TACCTGGAGCCTCCTGGGACT	0.607													47	16					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027525	37027525	+	Missense_Mutation	SNP	G	A	A	rs139443110		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37027525G>A	uc004ddl.1	+	1	1056	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	348										ovary(3)	3						AGAGCCTCCCGAGACTGGAGT	0.627													61	48					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027567	37027567	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37027567C>T	uc004ddl.1	+	1	1098	c.1084C>T	c.(1084-1086)CGC>TGC	p.R362C		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	362										ovary(3)	3						TCCAGAGACTCGCGTATCTCC	0.647													39	59					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027662	37027662	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37027662G>A	uc004ddl.1	+	1	1193	c.1179G>A	c.(1177-1179)GAG>GAA	p.E393E		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	393										ovary(3)	3						TCCGCCCAGAGACCCCCAAGA	0.607													41	34					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37028546	37028546	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37028546C>T	uc004ddl.1	+	1	2077	c.2063C>T	c.(2062-2064)TCT>TTT	p.S688F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	688										ovary(3)	3						ACTCGCGTATCTCATCTCCGC	0.657													30	28					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37028738	37028738	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37028738C>T	uc004ddl.1	+	1	2269	c.2255C>T	c.(2254-2256)CCA>CTA	p.P752L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	752										ovary(3)	3						AGTCTCCGCCCAGAGCCTCTT	0.622													25	38					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37028767	37028767	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37028767C>T	uc004ddl.1	+	1	2298	c.2284C>T	c.(2284-2286)CTC>TTC	p.L762F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	762										ovary(3)	3						CGTATCTCATCTCCGCCCGGA	0.632													41	27					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37029580	37029580	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37029580G>A	uc004ddl.1	+	1	3111	c.3097G>A	c.(3097-3099)GAA>AAA	p.E1033K		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	1033										ovary(3)	3						AGATGCATCGGAAGAAGATTA	0.393													19	74					0	0	1	0	0
PRRG1	5638	broad.mit.edu	37	X	37312709	37312709	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37312709C>T	uc004ddn.2	+	5	745	c.492C>T	c.(490-492)TCC>TCT	p.S164S	PRRG1_uc004ddo.2_Silent_p.S164S	NM_000950	NP_000941	O14668	TMG1_HUMAN	proline rich Gla (G-carboxyglutamic acid) 1	164	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	calcium ion binding			ovary(1)|breast(1)	2						CTCGCCTGTCCAATTGTGATC	0.542													30	27					0	0	1	0	0
CYBB	1536	broad.mit.edu	37	X	37663303	37663303	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37663303C>T	uc004ddr.2	+	9	1132	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I	CYBB_uc011mke.1_RNA|CYBB_uc011mkf.1_Silent_p.I325I|CYBB_uc011mkg.1_Silent_p.I90I	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	357	Cytoplasmic (Potential).|FAD-binding FR-type.				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						ATATCCGCATCGTTGGGGACT	0.468													12	56					0	0	1	0	0
CXorf27	25763	broad.mit.edu	37	X	37850185	37850185	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37850185C>T	uc004ddt.3	+	1	116	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_012274	NP_036406	O75409	HYPM_HUMAN	Huntingtin interacting protein M	31							DNA binding			central_nervous_system(1)	1						CTAGGAGCTTCGTGGACCGCG	0.458													5	28					0	0	1	0	0
SYTL5	94122	broad.mit.edu	37	X	37935888	37935888	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:37935888G>A	uc004ddu.2	+	7	1157	c.623G>A	c.(622-624)CGG>CAG	p.R208Q	SYTL5_uc004ddv.2_Missense_Mutation_p.R208Q|SYTL5_uc004ddx.2_Missense_Mutation_p.R208Q	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	208					intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						GACACTGGGCGGAGCTATAGC	0.388													38	30					0	0	1	0	0
OTC	5009	broad.mit.edu	37	X	38262948	38262948	+	Missense_Mutation	SNP	G	A	A	rs72558413		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:38262948G>A	uc004def.3	+	6	832	c.618G>A	c.(616-618)ATG>ATA	p.M206I		NM_000531	NP_000522	P00480	OTC_HUMAN	ornithine carbamoyltransferase precursor	206			M -> R (in OTCD; neonatal).|M -> I (in OTCD).		arginine biosynthetic process|urea cycle	mitochondrial matrix|ornithine carbamoyltransferase complex	ornithine carbamoyltransferase activity			ovary(1)|breast(1)	2					L-Citrulline(DB00155)|L-Ornithine(DB00129)	CCATCATGATGAGCGCAGCGA	0.483													29	21					0	0	1	0	0
MED14	9282	broad.mit.edu	37	X	40551483	40551483	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:40551483G>A	uc004dex.3	-	15	2072	c.1932C>T	c.(1930-1932)TTC>TTT	p.F644F		NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14	644	Interaction with SREBF1.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						ACATAGCGACGAAGTGGGCTA	0.378													28	13					0	0	1	0	0
USP9X	8239	broad.mit.edu	37	X	41055511	41055511	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:41055511C>T	uc004dfb.2	+	27	4618	c.3985C>T	c.(3985-3987)CGT>TGT	p.R1329C	USP9X_uc004dfc.2_Missense_Mutation_p.R1329C	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	1329					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						CAGAACTGTTCGTCAGGTGGC	0.398													52	39					0	0	1	0	0
USP9X	8239	broad.mit.edu	37	X	41084153	41084153	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:41084153C>T	uc004dfb.2	+	40	7543	c.6910C>T	c.(6910-6912)CGT>TGT	p.R2304C	USP9X_uc004dfc.2_Missense_Mutation_p.R2304C	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	2304					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						CAAATTGCTTCGTTTTTGCTG	0.363													21	85					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	43137553	43137553	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:43137553G>A	uc004dfx.2	+	1		c.5G>A								DQ570500																		ACAAACTTCTGAATGGACCCT	0.537													12	4					0	0	1	0	0
MAOA	4128	broad.mit.edu	37	X	43571145	43571145	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:43571145C>T	uc004dfy.2	+	4	514	c.333C>T	c.(331-333)GCC>GCT	p.A111A	MAOA_uc011mkw.1_5'UTR	NM_000240	NP_000231	P21397	AOFA_HUMAN	monoamine oxidase A	111	Cytoplasmic.				behavior|neurotransmitter biosynthetic process|neurotransmitter catabolic process|neurotransmitter secretion|xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	primary amine oxidase activity|protein binding			breast(2)|ovary(1)	3					Almotriptan(DB00918)|Carbidopa(DB00190)|Clonazepam(DB01068)|Dopamine(DB00988)|Fluvoxamine(DB00176)|Ginkgo biloba(DB01381)|Imipramine(DB00458)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Linezolid(DB00601)|Lorazepam(DB00186)|Moclobemide(DB01171)|Nicotine(DB00184)|Norepinephrine(DB00368)|Phenelzine(DB00780)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Rasagiline(DB01367)|Riboflavin(DB00140)|Rizatriptan(DB00953)|Selegiline(DB01037)|Sumatriptan(DB00669)|Testosterone(DB00624)|Tranylcypromine(DB00752)|Zolmitriptan(DB00315)	TTCGGGGCGCCTTTCCACCAG	0.363													38	43					0	0	1	0	0
MAOA	4128	broad.mit.edu	37	X	43571967	43571967	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:43571967C>T	uc004dfy.2	+	5	608	c.427C>T	c.(427-429)CCC>TCC	p.P143S	MAOA_uc011mkw.1_Missense_Mutation_p.P10S	NM_000240	NP_000231	P21397	AOFA_HUMAN	monoamine oxidase A	143	Cytoplasmic.				behavior|neurotransmitter biosynthetic process|neurotransmitter catabolic process|neurotransmitter secretion|xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	primary amine oxidase activity|protein binding			breast(2)|ovary(1)	3					Almotriptan(DB00918)|Carbidopa(DB00190)|Clonazepam(DB01068)|Dopamine(DB00988)|Fluvoxamine(DB00176)|Ginkgo biloba(DB01381)|Imipramine(DB00458)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Linezolid(DB00601)|Lorazepam(DB00186)|Moclobemide(DB01171)|Nicotine(DB00184)|Norepinephrine(DB00368)|Phenelzine(DB00780)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Rasagiline(DB01367)|Riboflavin(DB00140)|Rizatriptan(DB00953)|Selegiline(DB01037)|Sumatriptan(DB00669)|Testosterone(DB00624)|Tranylcypromine(DB00752)|Zolmitriptan(DB00315)	AACTGATGCACCCTGGGAGGC	0.453													17	13					0	0	1	0	0
MAOB	4129	broad.mit.edu	37	X	43627933	43627933	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:43627933C>T	uc004dfz.3	-	14	1554	c.1378G>A	c.(1378-1380)GAT>AAT	p.D460N	MAOB_uc011mkx.1_Missense_Mutation_p.G411E|MAOB_uc011mky.1_Missense_Mutation_p.D444N	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	460	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	CAGATTTCATCCTCTGGAATC	0.398													23	18					0	0	1	0	0
MAOB	4129	broad.mit.edu	37	X	43652765	43652765	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:43652765G>A	uc004dfz.3	-	8	1005	c.829C>T	c.(829-831)CCT>TCT	p.P277S	MAOB_uc011mkx.1_Missense_Mutation_p.P261S|MAOB_uc011mky.1_Missense_Mutation_p.P261S	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	277	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	ATTGGCAGAGGGGGATTGAAG	0.413													48	34					0	0	1	0	0
PHF16	9767	broad.mit.edu	37	X	46913813	46913813	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:46913813C>T	uc004dgx.2	+	9	1277	c.1226C>T	c.(1225-1227)TCC>TTC	p.S409F	PHF16_uc004dgy.2_Missense_Mutation_p.S409F	NM_001077445	NP_001070913	Q92613	JADE3_HUMAN	PHD finger protein 16	409					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0						GAGTTCTATTCCTTGGTACGA	0.532													23	21					0	0	1	0	0
RBM10	8241	broad.mit.edu	37	X	47041196	47041196	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:47041196C>T	uc004dhf.2	+	15	2003	c.1624C>T	c.(1624-1626)CCT>TCT	p.P542S	RBM10_uc004dhg.2_Missense_Mutation_p.P464S|RBM10_uc004dhh.2_Missense_Mutation_p.P541S|RBM10_uc010nhq.2_Missense_Mutation_p.P465S|RBM10_uc004dhi.2_Missense_Mutation_p.P607S	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	542					mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						GCTCCAGAGCCCTACCCATCC	0.602													3	23					0	0	1	0	0
UBA1	7317	broad.mit.edu	37	X	47060944	47060944	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:47060944C>T	uc004dhj.3	+	8	897	c.746C>T	c.(745-747)TCC>TTC	p.S249F	UBA1_uc004dhk.3_Missense_Mutation_p.S249F	NM_153280	NP_695012	P22314	UBA1_HUMAN	ubiquitin-activating enzyme E1	249	2 approximate repeats.				cell death|protein modification process		ATP binding|ligase activity|protein binding|small protein activating enzyme activity			ovary(1)	1						GACTTTGTCTCCTTTTCAGAA	0.547													28	12					0	0	1	0	0
USP11	8237	broad.mit.edu	37	X	47100963	47100963	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:47100963C>T	uc004dhp.2	+	9	1173	c.1173C>T	c.(1171-1173)TCC>TCT	p.S391S	USP11_uc004dhq.2_Silent_p.S118S	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	391					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						ATTTTGCATCCCAATTTCTGG	0.547													59	30					0	0	1	0	0
ZNF157	7712	broad.mit.edu	37	X	47272290	47272290	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:47272290C>T	uc004dhr.1	+	4	887	c.818C>T	c.(817-819)CCC>CTC	p.P273L		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	273					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGGGAGAAACCCTATGAATGT	0.448													20	11					0	0	1	0	0
SSX5	6758	broad.mit.edu	37	X	48047090	48047090	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48047090C>T	uc004dja.1	-	7	597	c.544G>A	c.(544-546)GAC>AAC	p.D182N	SSX5_uc004diz.1_Missense_Mutation_p.D223N	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						TCCTGAGGGTCGCTGATCTCT	0.483													114	114					0	0	1	0	0
SSX5	6758	broad.mit.edu	37	X	48047099	48047099	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48047099C>T	uc004dja.1	-	7	588	c.535G>A	c.(535-537)GAG>AAG	p.E179K	SSX5_uc004diz.1_Missense_Mutation_p.E220K	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						TCGCTGATCTCTTCATAAATC	0.483													119	122					0	0	1	0	0
SSX5	6758	broad.mit.edu	37	X	48049607	48049607	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48049607C>T	uc004dja.1	-	6	481	c.428G>A	c.(427-429)GGA>GAA	p.G143E	SSX5_uc004diz.1_Missense_Mutation_p.G184E	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	143					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						ATTTAGTTTTCCTGAGGGGCG	0.483													64	42					0	0	1	0	0
SSX3	10214	broad.mit.edu	37	X	48206962	48206962	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48206962C>T	uc004djd.1	-	7	638	c.544G>A	c.(544-546)GAT>AAT	p.D182N		NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						TCCTCAGGATCGCTGATCTCT	0.483													166	125					0	0	1	0	0
SSX3	10214	broad.mit.edu	37	X	48213490	48213490	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48213490C>T	uc004djd.1	-	4	318	c.224G>A	c.(223-225)CGG>CAG	p.R75Q	SSX3_uc004dje.2_Missense_Mutation_p.R75Q|SSX3_uc010nic.2_Missense_Mutation_p.R75Q	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	75	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						GTCTGTGACCCGTTTATTACG	0.423													16	100					0	0	1	0	0
TBC1D25	4943	broad.mit.edu	37	X	48419014	48419014	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48419014C>T	uc004dka.1	+	6	1829	c.1718C>T	c.(1717-1719)CCC>CTC	p.P573L	TBC1D25_uc011mly.1_Missense_Mutation_p.P515L|TBC1D25_uc004dkb.1_Missense_Mutation_p.P319L|TBC1D25_uc011mlz.1_Missense_Mutation_p.P319L|TBC1D25_uc011mma.1_Missense_Mutation_p.P319L|TBC1D25_uc004dkc.1_Missense_Mutation_p.P319L|TBC1D25_uc011mmb.1_Missense_Mutation_p.P577L|TBC1D25_uc011mmc.1_Missense_Mutation_p.P319L|TBC1D25_uc011mmd.1_Missense_Mutation_p.P319L	NM_002536	NP_002527	Q3MII6	TBC25_HUMAN	TBC1 domain family, member 25	573						intracellular	Rab GTPase activator activity			ovary(1)	1						GAGGCCTCTCCCACTGGTGAT	0.577													41	53					0	0	1	0	0
WDR13	64743	broad.mit.edu	37	X	48458948	48458948	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48458948C>T	uc004dkh.1	+	6	912	c.765C>T	c.(763-765)ATC>ATT	p.I255I	WDR13_uc010nif.1_Silent_p.I133I|WDR13_uc004dki.1_Silent_p.I163I|WDR13_uc004dkj.1_Silent_p.I255I|WDR13_uc004dkk.1_Silent_p.I163I|WDR13_uc004dkl.3_Silent_p.I163I|WDR13_uc011mme.1_Silent_p.I133I	NM_017883	NP_060353	Q9H1Z4	WDR13_HUMAN	WD repeat domain 13 protein	255						cytoplasm|nucleus				ovary(2)	2						TCCGAGAGATCCCTGACCCCG	0.597													10	8					0	0	1	0	0
WAS	7454	broad.mit.edu	37	X	48542353	48542353	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48542353G>A	uc004dkm.3	+	1	168	c.111G>A	c.(109-111)GAG>GAA	p.E37E		NM_000377	NP_000368	P42768	WASP_HUMAN	Wiskott-Aldrich syndrome protein	37					blood coagulation|defense response|epidermis development|immune response|T cell receptor signaling pathway	actin cytoskeleton|cytosol	identical protein binding|small GTPase regulator activity			ovary(1)	1		all_lung(315;1.27e-10)				GACTCTTTGAGATGCTTGGAC	0.517			Mis|N|F|S			lymphoma			Wiskott-Aldrich_syndrome				38	26					0	0	1	0	0
KCND1	3750	broad.mit.edu	37	X	48826306	48826306	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48826306G>A	uc004dlx.1	-	1	1946	c.373C>T	c.(373-375)CCC>TCC	p.P125S	KCND1_uc004dlw.1_5'Flank	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	125	Cytoplasmic (Potential).					voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						ACTAGCTCGGGAACCAGGCCG	0.622													12	8					0	0	1	0	0
TFE3	7030	broad.mit.edu	37	X	48896732	48896732	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:48896732G>A	uc004dmb.3	-	3	672	c.434C>T	c.(433-435)CCT>CTT	p.P145L	TFE3_uc004dmc.3_Missense_Mutation_p.P40L|TFE3_uc004dme.1_RNA	NM_006521	NP_006512	P19532	TFE3_HUMAN	transcription factor E3	145					humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding		ASPSCR1/TFE3(161)|PRCC/TFE3(25)|SFPQ/TFE3(6)|NONO/TFE3(2)|CLTC/TFE3(2)	soft_tissue(120)|kidney(76)|central_nervous_system(1)	197						GGCAGGTGCAGGACTGGGGAA	0.682			T	SFPQ|ASPSCR1|PRCC|NONO|CLTC	papillary renal|alveolar soft part sarcoma|renal								13	14					0	0	1	0	0
CACNA1F	778	broad.mit.edu	37	X	49067928	49067928	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:49067928C>T	uc004dnb.2	-	36	4209	c.4147G>A	c.(4147-4149)GAG>AAG	p.E1383K	CACNA1F_uc010nip.2_Missense_Mutation_p.E1372K	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1383	Extracellular (Potential).|IV.	Calcium ion selectivity and permeability (By similarity).			axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	TGCCATGCCTCACCAGTGGCA	0.547													16	17					0	0	1	0	0
GAGE2A	729447	broad.mit.edu	37	X	49355801	49355801	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:49355801C>T	uc004doi.3	+	3	180	c.83C>T	c.(82-84)CCC>CTC	p.P28L	GAGE1_uc011mnu.1_Intron|GAGE1_uc004doj.2_Intron	NM_001127212	NP_001120684	Q6NT46	GAG2A_HUMAN	G antigen 2A	28											0	Ovarian(276;0.236)					ATTCCCCAGCCCGAGCAGTTC	0.438													84	370					0	0	1	0	0
PAGE4	9506	broad.mit.edu	37	X	49597176	49597176	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:49597176G>A	uc004don.1	+	4	294	c.215G>A	c.(214-216)CGG>CAG	p.R72Q		NM_007003	NP_008934	O60829	GAGC1_HUMAN	G antigen, family C, 1	72											0	Ovarian(276;0.236)					GAAAAGACTCGGAGTGAGCGT	0.358													7	30					0	0	1	0	0
PAGE4	9506	broad.mit.edu	37	X	49597218	49597218	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:49597218C>T	uc004don.1	+	4	336	c.257C>T	c.(256-258)CCA>CTA	p.P86L		NM_007003	NP_008934	O60829	GAGC1_HUMAN	G antigen, family C, 1	86											0	Ovarian(276;0.236)					GAGAAGACTCCACCTAATCCT	0.383													20	30					0	0	1	0	0
AKAP4	8852	broad.mit.edu	37	X	49957581	49957581	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:49957581C>T	uc004dow.1	-	5	1907	c.1783G>A	c.(1783-1785)GCA>ACA	p.A595T	AKAP4_uc004dov.1_Missense_Mutation_p.A212T|AKAP4_uc010njp.1_Missense_Mutation_p.A417T|AKAP4_uc004dou.1_Missense_Mutation_p.A586T	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	595					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					ACTGAAAGTGCTTTGGCACTT	0.468													39	33					0	0	1	0	0
AKAP4	8852	broad.mit.edu	37	X	49957827	49957827	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:49957827C>T	uc004dow.1	-	5	1661	c.1537G>A	c.(1537-1539)GGA>AGA	p.G513R	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Missense_Mutation_p.G335R|AKAP4_uc004dou.1_Missense_Mutation_p.G504R	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	513					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					CATGAGTTTCCTTGCTTTTGG	0.448													86	53					0	0	1	0	0
AKAP4	8852	broad.mit.edu	37	X	49958711	49958711	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:49958711G>A	uc004dow.1	-	5	777	c.653C>T	c.(652-654)TCC>TTC	p.S218F	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Missense_Mutation_p.S40F|AKAP4_uc004dou.1_Missense_Mutation_p.S209F	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	218					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					GACGTAGAAGGAAAGGTCATC	0.438													84	36					0	0	1	0	0
CCNB3	85417	broad.mit.edu	37	X	50052708	50052708	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:50052708C>T	uc004dox.3	+	6	1837	c.1539C>T	c.(1537-1539)ACC>ACT	p.T513T	CCNB3_uc004doy.2_Silent_p.T513T|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	513					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TACAGACCACCTCTGGAGAAA	0.428													7	27					0	0	1	0	0
CCNB3	85417	broad.mit.edu	37	X	50094243	50094243	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:50094243C>T	uc004dox.3	+	12	4262	c.3964C>T	c.(3964-3966)CCC>TCC	p.P1322S	CCNB3_uc004doy.2_Missense_Mutation_p.P1322S|CCNB3_uc004doz.2_Missense_Mutation_p.P218S|CCNB3_uc010njq.2_Missense_Mutation_p.P214S|CCNB3_uc004dpa.2_Missense_Mutation_p.P161S	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1322					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					CTTCCAGGTTCCCTTCCTGGA	0.458													62	37					0	0	1	0	0
DGKK	139189	broad.mit.edu	37	X	50163489	50163489	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:50163489C>T	uc010njr.1	-	4	914	c.854G>A	c.(853-855)CGA>CAA	p.R285Q		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	285	PH.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					AGTGATTTTTCGTTGTGGTGT	0.383													47	22					0	0	1	0	0
SHROOM4	57477	broad.mit.edu	37	X	50339780	50339780	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:50339780C>T	uc004dpe.2	-	9	4423	c.4397G>A	c.(4396-4398)CGA>CAA	p.R1466Q	SHROOM4_uc004dpd.3_RNA	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	1466	Potential.|ASD2.				actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					CTCCAGCTCTCGCTGTTCAAT	0.502													21	17					0	0	1	0	0
SHROOM4	57477	broad.mit.edu	37	X	50345793	50345793	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:50345793G>A	uc004dpe.2	-	7	3808	c.3782C>T	c.(3781-3783)TCG>TTG	p.S1261L	SHROOM4_uc004dpd.3_RNA	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	1261	ASD2.				actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					TGAAGGAGGCGAAAAGTGCTG	0.458													17	13					0	0	1	0	0
SHROOM4	57477	broad.mit.edu	37	X	50376884	50376884	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:50376884G>A	uc004dpe.2	-	4	2215	c.2189C>T	c.(2188-2190)CCA>CTA	p.P730L	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Missense_Mutation_p.P614L	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	730					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					ATTATGCTCTGGAGACCATCT	0.552													3	21					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	51150631	51150631	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:51150631C>T	uc004dpj.2	+	1	865	c.763C>T	c.(763-765)CCT>TCT	p.P255S		NM_203407	NP_981952			hypothetical protein LOC340602																		TCATCTAGACCCTGCTCGTCT	0.682													10	6					0	0	1	0	0
GSPT2	23708	broad.mit.edu	37	X	51487060	51487060	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:51487060C>T	uc004dpl.2	+	1	564	c.338C>T	c.(337-339)TCC>TTC	p.S113F		NM_018094	NP_060564	Q8IYD1	ERF3B_HUMAN	peptide chain release factor 3	113					cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|translational termination	cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1	Ovarian(276;0.236)					GTGGAACCTTCCCGAGAGGAA	0.572													7	4					0	0	1	0	0
KDM5C	8242	broad.mit.edu	37	X	53223912	53223912	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:53223912G>A	uc004drz.2	-	23	3980	c.3447C>T	c.(3445-3447)GCC>GCT	p.A1149A	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Silent_p.A1082A|KDM5C_uc004dsa.2_Silent_p.A1148A	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	1149					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						CCTCCTTGAAGGCCACGATCT	0.542			N|F|S		clear cell renal carcinoma								10	12					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53610870	53610870	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:53610870G>A	uc004dsp.2	-	42	5570	c.5168C>T	c.(5167-5169)CCT>CTT	p.P1723L	HUWE1_uc004dsn.2_Missense_Mutation_p.P548L	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1723					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TAGGGCCAAAGGGGTATCTAT	0.438													53	33					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53613787	53613787	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:53613787G>A	uc004dsp.2	-	38	5099	c.4697C>T	c.(4696-4698)CCC>CTC	p.P1566L	HUWE1_uc004dsn.2_Missense_Mutation_p.P391L	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1566					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CTGGAGGCAGGGCTGAACCAC	0.488													12	22					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53617456	53617456	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:53617456G>A	uc004dsp.2	-	35	4501	c.4099C>T	c.(4099-4101)CTC>TTC	p.L1367F	HUWE1_uc004dsn.2_Missense_Mutation_p.L192F	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1367					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GACATGCTGAGATCCTAGAGT	0.438													11	54					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53630443	53630443	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:53630443G>A	uc004dsp.2	-	27	3164	c.2762C>T	c.(2761-2763)TCC>TTC	p.S921F		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	921					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CTGGTTTACGGAGATGGAACG	0.418													28	18					0	0	1	0	0
PHF8	23133	broad.mit.edu	37	X	54048724	54048724	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54048724G>A	uc004dsu.2	-	4	442	c.369C>T	c.(367-369)TTC>TTT	p.F123F	PHF8_uc004dst.2_Silent_p.F87F|PHF8_uc004dsw.2_Silent_p.F87F|PHF8_uc004dsy.2_Silent_p.F87F	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	123					brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						GCTCTCTGACGAACGTAGGGC	0.537													59	44					0	0	1	0	0
FAM120C	54954	broad.mit.edu	37	X	54184166	54184166	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54184166G>A	uc004dsz.3	-	3	1068	c.985C>T	c.(985-987)CAC>TAC	p.H329Y	FAM120C_uc011moh.1_Missense_Mutation_p.H329Y	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	329										ovary(1)|central_nervous_system(1)	2						AGGCTCCAGTGAAAAGCAGCC	0.423													10	9					0	0	1	0	0
WNK3	65267	broad.mit.edu	37	X	54275341	54275341	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54275341G>A	uc004dtd.1	-	17	3879	c.3440C>T	c.(3439-3441)TCC>TTC	p.S1147F	WNK3_uc004dtc.1_Missense_Mutation_p.S1147F	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	1147					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						TTCAGCAGAGGAAGAAAATGG	0.438													40	53					0	0	1	0	0
GNL3L	54552	broad.mit.edu	37	X	54574665	54574665	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54574665C>T	uc004dth.1	+	9	773	c.634C>T	c.(634-636)CGT>TGT	p.R212C	GNL3L_uc004dti.2_RNA	NM_019067	NP_061940	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3	212					ribosome biogenesis	nucleolus	GTP binding			ovary(1)	1						TTTCCAGAATCGTTGCAGTGT	0.478													9	5					0	0	1	0	0
GNL3L	54552	broad.mit.edu	37	X	54578016	54578016	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54578016C>T	uc004dth.1	+	11	1018	c.879C>T	c.(877-879)GTC>GTT	p.V293V	GNL3L_uc004dti.2_RNA	NM_019067	NP_061940	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3	293	G.				ribosome biogenesis	nucleolus	GTP binding			ovary(1)	1						TGCAGGAGGTCTACCTGGACA	0.587													6	23					0	0	1	0	0
GNL3L	54552	broad.mit.edu	37	X	54578136	54578136	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54578136C>T	uc004dth.1	+	11	1138	c.999C>T	c.(997-999)ACC>ACT	p.T333T	GNL3L_uc004dti.2_RNA	NM_019067	NP_061940	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3	333					ribosome biogenesis	nucleolus	GTP binding			ovary(1)	1						ACCCTGTGACCCCAGTGGAGA	0.627													6	33					0	0	1	0	0
ITIH5L	347365	broad.mit.edu	37	X	54776454	54776454	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54776454C>T	uc004dtj.2	-	13	3846	c.3816G>A	c.(3814-3816)GTG>GTA	p.V1272V		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	1272					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						TGCCTAGAATCACAGGCACAT	0.602													17	5					0	0	1	0	0
ITIH5L	347365	broad.mit.edu	37	X	54777751	54777751	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54777751G>A	uc004dtj.2	-	12	3445	c.3415C>T	c.(3415-3417)CGC>TGC	p.R1139C		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	1139					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						AAGTAGGTGCGAGTCTGGTCC	0.592													20	25					0	0	1	0	0
ITIH5L	347365	broad.mit.edu	37	X	54785280	54785280	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54785280C>T	uc004dtj.2	-	8	1257	c.1227G>A	c.(1225-1227)GTG>GTA	p.V409V		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	409	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						TGGAGAGGATCACACTGGGGG	0.627													15	14					0	0	1	0	0
TRO	7216	broad.mit.edu	37	X	54951462	54951462	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54951462C>T	uc004dtq.2	+	6	1553	c.1446C>T	c.(1444-1446)TTC>TTT	p.F482F	TRO_uc004dts.2_Silent_p.F482F|TRO_uc004dtr.2_Silent_p.F482F|TRO_uc004dtt.2_RNA|TRO_uc004dtu.2_RNA|TRO_uc004dtv.2_Silent_p.F85F|TRO_uc011mok.1_Silent_p.F13F|TRO_uc004dtw.2_Silent_p.F85F|TRO_uc004dtx.2_5'UTR	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	482	MAGE.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						ATGAATATTTCCCAGAAATCA	0.502													15	10					0	0	1	0	0
TRO	7216	broad.mit.edu	37	X	54955914	54955914	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54955914C>T	uc004dtq.2	+	12	2864	c.2757C>T	c.(2755-2757)TTC>TTT	p.F919F	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Silent_p.F450F|TRO_uc004dtw.2_Silent_p.F522F|TRO_uc004dtx.2_Silent_p.F302F	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	919	62 X 10 AA approximate tandem repeats.|11.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						GTATCTGCTTCGGTGGCTCTC	0.552													16	22					0	0	1	0	0
TRO	7216	broad.mit.edu	37	X	54956501	54956501	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:54956501C>T	uc004dtq.2	+	12	3451	c.3344C>T	c.(3343-3345)ACC>ATC	p.T1115I	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Missense_Mutation_p.T646I|TRO_uc004dtw.2_Missense_Mutation_p.T718I|TRO_uc004dtx.2_Missense_Mutation_p.T498I	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	1115	31.|62 X 10 AA approximate tandem repeats.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						GCACTTAGTACCGCTGCTGAC	0.582													33	13					0	0	1	0	0
MAGEH1	28986	broad.mit.edu	37	X	55479462	55479463	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:55479462_55479463CC>TT	uc004dum.2	+	1	925_926	c.655_656CC>TT	c.(655-657)CCT>TTT	p.P219F		NM_014061	NP_054780	Q9H213	MAGH1_HUMAN	melanoma antigen, family H, 1 protein	219					apoptosis					ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TTATTCCGCCCCTTAAGTAGAT	0.495													24	17					0	0	1	0	0
FAAH2	158584	broad.mit.edu	37	X	57407426	57407426	+	Silent	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:57407426C>A	uc004dvc.2	+	7	1109	c.960C>A	c.(958-960)TCC>TCA	p.S320S		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	320						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						TTTTAATGTCCAAAGTGGACC	0.303										HNSCC(52;0.14)			49	26					3.39706e-21	3.41589e-21	1	1	0
FAAH2	158584	broad.mit.edu	37	X	57473361	57473361	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:57473361G>A	uc004dvc.2	+	9	1266	c.1117G>A	c.(1117-1119)GAA>AAA	p.E373K		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	373						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						TCAATCTCAGGAACCTGTGAA	0.363										HNSCC(52;0.14)			6	9					0	0	1	0	0
MTMR8	55613	broad.mit.edu	37	X	63488441	63488441	+	Missense_Mutation	SNP	C	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:63488441C>G	uc004dvs.2	-	14	2159	c.2091G>C	c.(2089-2091)GAG>GAC	p.E697D	MTMR8_uc011mou.1_Intron	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	697						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						AGTAGTCTGCCTCCTTGGTGC	0.522													23	19					0	0	1	0	0
ZC4H2	55906	broad.mit.edu	37	X	64138976	64138976	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:64138976C>T	uc004dvu.2	-	4	595	c.507G>A	c.(505-507)AGG>AGA	p.R169R	ZC4H2_uc004dvv.2_Silent_p.R146R|ZC4H2_uc011mov.1_Silent_p.R146R|ZC4H2_uc011mow.1_Intron|ZC4H2_uc004dvw.1_3'UTR	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	169							metal ion binding|protein binding			ovary(1)	1						TATCCTGCTTCCTAGCCACTT	0.597													32	16					0	0	1	0	0
ZC4H2	55906	broad.mit.edu	37	X	64139971	64139971	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:64139971G>A	uc004dvu.2	-	3	476	c.388C>T	c.(388-390)CTT>TTT	p.L130F	ZC4H2_uc004dvv.2_Missense_Mutation_p.L107F|ZC4H2_uc011mov.1_Missense_Mutation_p.L107F|ZC4H2_uc011mow.1_Missense_Mutation_p.L130F|ZC4H2_uc004dvw.1_Missense_Mutation_p.L130F	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	130							metal ion binding|protein binding			ovary(1)	1						TCCAAGGAAAGCTTCTCCTCT	0.473													6	25					0	0	1	0	0
ZC4H2	55906	broad.mit.edu	37	X	64141826	64141826	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:64141826C>T	uc004dvu.2	-	2	184	c.96G>A	c.(94-96)AAG>AAA	p.K32K	ZC4H2_uc004dvv.2_Silent_p.K9K|ZC4H2_uc011mov.1_Silent_p.K9K|ZC4H2_uc011mow.1_Silent_p.K32K|ZC4H2_uc004dvw.1_Silent_p.K32K	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	32	Potential.						metal ion binding|protein binding			ovary(1)	1						CAAACTCAGCCTTCAAACGAG	0.483													21	10					0	0	1	0	0
VSIG4	11326	broad.mit.edu	37	X	65252517	65252517	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:65252517G>A	uc004dwh.2	-	3	614	c.487C>T	c.(487-489)CTT>TTT	p.L163F	VSIG4_uc004dwi.2_Intron|VSIG4_uc010nkq.1_Missense_Mutation_p.L163F|VSIG4_uc004dwj.2_Missense_Mutation_p.L163F|VSIG4_uc011moy.1_Intron|VSIG4_uc004dwk.2_Missense_Mutation_p.L163F|VSIG4_uc004dwl.2_Missense_Mutation_p.L59F	NM_007268	NP_009199	Q9Y279	VSIG4_HUMAN	V-set and immunoglobulin domain containing 4	163	Ig-like 2.|Extracellular (Potential).				complement activation, alternative pathway	integral to membrane	protein binding				0						TGGCATTGAAGGCTAATCCTC	0.483													8	33					0	0	1	0	0
AR	367	broad.mit.edu	37	X	66905896	66905896	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:66905896G>A	uc004dwu.1	+	3	2928	c.1813G>A	c.(1813-1815)GAT>AAT	p.D605N	AR_uc011mpd.1_Missense_Mutation_p.D605N|AR_uc011mpe.1_RNA|AR_uc011mpf.1_Missense_Mutation_p.D605N|AR_uc004dwv.1_Missense_Mutation_p.D73N	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	604	NR C4-type.|Interaction with HIPK3 (By similarity).|Nuclear receptor.		D -> Y (in PAIS).		cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	TTGCACTATTGATAAATTCCG	0.373									Androgen_Insensitivity_Syndrome				29	16					0	0	1	0	0
AR	367	broad.mit.edu	37	X	66931444	66931444	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:66931444G>A	uc004dwu.1	+	4	3201	c.2086G>A	c.(2086-2088)GAC>AAC	p.D696N	AR_uc004dwv.1_Missense_Mutation_p.D164N	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	695	Ligand-binding.|Interaction with MYST2.		D -> H (in AIS).|D -> V (in AIS).|D -> N (in AIS; almost complete loss of androgen binding and transcription activation).		cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	CAACCAGCCCGACTCCTTTGC	0.527									Androgen_Insensitivity_Syndrome				9	24					0	0	1	0	0
AR	367	broad.mit.edu	37	X	66937361	66937361	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:66937361C>T	uc004dwu.1	+	5	3330	c.2215C>T	c.(2215-2217)CAG>TAG	p.Q739*	AR_uc004dwv.1_Nonsense_Mutation_p.Q207*	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	738	Ligand-binding.|Interaction with MYST2.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	GGCTGTCATTCAGTACTCCTG	0.542									Androgen_Insensitivity_Syndrome				17	13					0	0	1	0	0
AR	367	broad.mit.edu	37	X	66937411	66937411	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:66937411C>T	uc004dwu.1	+	5	3380	c.2265C>T	c.(2263-2265)TTC>TTT	p.F755F	AR_uc004dwv.1_Silent_p.F223F	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	754	Ligand-binding.|Interaction with MYST2.		F -> V (in AIS).|F -> L (in PAIS and prostate cancer).		cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	GGCGATCCTTCACCAATGTCA	0.537									Androgen_Insensitivity_Syndrome				23	15					0	0	1	0	0
AR	367	broad.mit.edu	37	X	66937441	66937441	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:66937441C>T	uc004dwu.1	+	5	3410	c.2295C>T	c.(2293-2295)TTC>TTT	p.F765F	AR_uc004dwv.1_Silent_p.F233F	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	764	Ligand-binding.|Interaction with MYST2.		F -> L (in AIS).		cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	TGCTCTACTTCGCCCCTGATC	0.542									Androgen_Insensitivity_Syndrome				24	19					0	0	1	0	0
AR	367	broad.mit.edu	37	X	66942707	66942707	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:66942707G>A	uc004dwu.1	+	7	3603	c.2488G>A	c.(2488-2490)GAA>AAA	p.E830K	AR_uc004dwv.1_Missense_Mutation_p.E298K	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	829	Ligand-binding.|Interaction with MYST2.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	ATTCTTTGATGAACTTCGAAT	0.443									Androgen_Insensitivity_Syndrome				4	16					0	0	1	0	0
OPHN1	4983	broad.mit.edu	37	X	67293003	67293003	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:67293003C>T	uc004dww.3	-	20	2119	c.1825G>A	c.(1825-1827)GAA>AAA	p.E609K	OPHN1_uc011mpg.1_Missense_Mutation_p.E609K	NM_002547	NP_002538	O60890	OPHN1_HUMAN	oligophrenin 1	609					axon guidance|endocytosis|filopodium assembly|small GTPase mediated signal transduction|substrate-dependent cell migration, cell extension	axon|cell junction|cytosol|dendritic spine|synapse	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(2)	2						CCTTCGCTTTCATCCAGGGAA	0.483													9	2					0	0	1	0	0
OPHN1	4983	broad.mit.edu	37	X	67502952	67502952	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:67502952G>A	uc004dww.3	-	4	552	c.258C>T	c.(256-258)TCC>TCT	p.S86S	OPHN1_uc011mpg.1_Silent_p.S86S|OPHN1_uc004dwx.2_Silent_p.S86S	NM_002547	NP_002538	O60890	OPHN1_HUMAN	oligophrenin 1	86					axon guidance|endocytosis|filopodium assembly|small GTPase mediated signal transduction|substrate-dependent cell migration, cell extension	axon|cell junction|cytosol|dendritic spine|synapse	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(2)	2						ATTCCTTGAAGGATTCAGCTG	0.413													17	21					0	0	1	0	0
STARD8	9754	broad.mit.edu	37	X	67938308	67938308	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:67938308G>A	uc004dxa.2	+	5	1684	c.1312G>A	c.(1312-1314)GGA>AGA	p.G438R	STARD8_uc004dxb.2_Missense_Mutation_p.G518R|STARD8_uc004dxc.3_Missense_Mutation_p.G438R	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	438					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						TGTGGAAGAAGGACACTCCAT	0.493													16	8					0	0	1	0	0
STARD8	9754	broad.mit.edu	37	X	67941580	67941580	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:67941580C>T	uc004dxa.2	+	9	2583	c.2211C>T	c.(2209-2211)CCC>CCT	p.P737P	STARD8_uc004dxb.2_Silent_p.P817P|STARD8_uc004dxc.3_Silent_p.P737P	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	737	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						AGGATAGCCCCTCTCCCAGGT	0.577													17	16					0	0	1	0	0
STARD8	9754	broad.mit.edu	37	X	67943846	67943846	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:67943846C>T	uc004dxa.2	+	13	3209	c.2837C>T	c.(2836-2838)CCG>CTG	p.P946L	STARD8_uc004dxb.2_Missense_Mutation_p.P1026L|STARD8_uc004dxc.3_Missense_Mutation_p.P946L	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	946	START.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						TCCCTGGATCCGGAACAACCT	0.607													24	23					0	0	1	0	0
EFNB1	1947	broad.mit.edu	37	X	68060237	68060237	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:68060237C>T	uc004dxd.3	+	5	1561	c.781C>T	c.(781-783)CTA>TTA	p.L261L	EFNB1_uc004dxe.2_Silent_p.L261L	NM_004429	NP_004420	P98172	EFNB1_HUMAN	ephrin-B1 precursor	261	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	integral to plasma membrane|soluble fraction|synapse	ephrin receptor binding				0						CCTGACGGTCCTACTACTGAA	0.622													12	11					0	0	1	0	0
OTUD6A	139562	broad.mit.edu	37	X	69282509	69282509	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:69282509C>T	uc004dxu.1	+	1	169	c.135C>T	c.(133-135)CTC>CTT	p.L45L		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	45										lung(1)|skin(1)	2						AGCAGTTGCTCCAAGACGTGG	0.582													5	7					0	0	1	0	0
OTUD6A	139562	broad.mit.edu	37	X	69282579	69282579	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:69282579G>A	uc004dxu.1	+	1	239	c.205G>A	c.(205-207)GAC>AAC	p.D69N		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	69										lung(1)|skin(1)	2						GTTCCAAGACGACAGTAGCAT	0.547													12	8					0	0	1	0	0
OTUD6A	139562	broad.mit.edu	37	X	69283116	69283116	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:69283116G>A	uc004dxu.1	+	1	776	c.742G>A	c.(742-744)GAG>AAG	p.E248K		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	248	OTU.									lung(1)|skin(1)	2						CATCGGGGAGGAGTACGTCAA	0.657													13	16					0	0	1	0	0
DGAT2L6	347516	broad.mit.edu	37	X	69419661	69419661	+	Splice_Site	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:69419661G>A	uc004dxx.1	+	3	294	c.197_splice	c.e3-1	p.G66_splice		NM_198512	NP_940914	Q6ZPD8	DG2L6_HUMAN	diacylglycerol O-acyltransferase 2-like 6						lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)	1						TGTACCCACAGGTGGCAGGCG	0.552													13	15					0	0	1	0	0
KIF4A	24137	broad.mit.edu	37	X	69622482	69622482	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:69622482A>T	uc004dyg.2	+	23	2683	c.2556A>T	c.(2554-2556)CAA>CAT	p.Q852H	KIF4A_uc010nkw.2_Missense_Mutation_p.Q852H	NM_012310	NP_036442	O95239	KIF4A_HUMAN	kinesin family member 4	852	Potential.|Interaction with PRC1.				anterograde axon cargo transport|axon guidance|blood coagulation|organelle organization	chromosome|cytosol|midbody|nuclear matrix|spindle microtubule	ATP binding|DNA binding|microtubule motor activity|protein binding			ovary(4)	4						GACCAAAACAACGCTGGGAGA	0.468													14	17					0	0	1	0	0
DLG3	1741	broad.mit.edu	37	X	69669255	69669255	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:69669255C>T	uc004dyi.1	+	3	783	c.455C>T	c.(454-456)CCC>CTC	p.P152L	DLG3_uc004dyj.1_5'Flank	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	152	PDZ 1.				axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					ATCGACAATCCCCATGTCCCT	0.567													29	20					0	0	1	0	0
DLG3	1741	broad.mit.edu	37	X	69699102	69699102	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:69699102C>T	uc004dyi.1	+	10	1836	c.1508C>T	c.(1507-1509)TCC>TTC	p.S503F	DLG3_uc004dyj.1_Missense_Mutation_p.S166F|DLG3_uc011mpn.1_Missense_Mutation_p.S19F	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	503	SH3.				axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					GAAAAGAGGTCCTTGTATGTC	0.493													40	29					0	0	1	0	0
DLG3	1741	broad.mit.edu	37	X	69719813	69719813	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:69719813C>T	uc004dyi.1	+	16	2387	c.2059C>T	c.(2059-2061)CAG>TAG	p.Q687*	DLG3_uc004dyj.1_Nonsense_Mutation_p.Q382*|DLG3_uc011mpn.1_Nonsense_Mutation_p.Q235*	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	687	Guanylate kinase-like.				axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					GAAAGATATTCAGGACAACAA	0.488													9	14					0	0	1	0	0
SLC7A3	84889	broad.mit.edu	37	X	70145692	70145692	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:70145692G>A	uc004dyn.2	-	12	1989	c.1831C>T	c.(1831-1833)CCC>TCC	p.P611S	SLC7A3_uc004dyo.2_Missense_Mutation_p.P611S	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	611	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	AGAGTGCCGGGATCAAGGTCT	0.498													29	21					0	0	1	0	0
CXorf65	158830	broad.mit.edu	37	X	70325897	70325897	+	Missense_Mutation	SNP	G	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:70325897G>T	uc011mpo.1	-	3	217	c.203C>A	c.(202-204)ACA>AAA	p.T68K	CXorf65_uc011mpp.1_Missense_Mutation_p.T20K	NM_001025265	NP_001020436	A6NEN9	CX065_HUMAN	hypothetical protein LOC158830	68										central_nervous_system(1)	1						GCTTCGAGCTGTAAGGTATTT	0.473													32	14					9.65021e-13	9.69055e-13	1	1	0
MED12	9968	broad.mit.edu	37	X	70342950	70342950	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:70342950C>T	uc004dyy.2	+	11	1690	c.1491C>T	c.(1489-1491)TCC>TCT	p.S497S	MED12_uc011mpq.1_Silent_p.S497S|MED12_uc004dyz.2_Silent_p.S497S|MED12_uc004dza.2_Silent_p.S344S	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	497					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					TCCAGATCTCCTCAGATGATG	0.483													82	64					0	0	1	0	0
NLGN3	54413	broad.mit.edu	37	X	70375179	70375179	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:70375179C>T	uc004dzd.1	+	4	893	c.693C>T	c.(691-693)ATC>ATT	p.I231I	NLGN3_uc010nlb.1_Silent_p.I191I|NLGN3_uc004dzb.2_Silent_p.I211I|NLGN3_uc004dzc.2_Silent_p.I94I|NLGN3_uc011mps.1_Silent_p.I191I|NLGN3_uc004dze.2_Silent_p.I29I|NLGN3_uc011mpr.1_Silent_p.I191I	NM_018977	NP_061850	Q9NZ94	NLGN3_HUMAN	neuroligin 3	231	Extracellular (Potential).				neuron cell-cell adhesion|positive regulation of synaptogenesis|receptor-mediated endocytosis|social behavior|synapse assembly	cell surface|endocytic vesicle|integral to plasma membrane|synapse	neurexin binding|receptor activity			ovary(1)	1	Renal(35;0.156)					GCAATGTCATCGTCATCACCC	0.542													36	30					0	0	1	0	0
NLGN3	54413	broad.mit.edu	37	X	70387219	70387219	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:70387219C>T	uc004dzd.1	+	6	1472	c.1272C>T	c.(1270-1272)GTC>GTT	p.V424V	NLGN3_uc010nlb.1_Silent_p.V384V|NLGN3_uc004dzb.2_Silent_p.V404V|NLGN3_uc004dzc.2_Silent_p.V287V|NLGN3_uc011mps.1_Silent_p.V384V|NLGN3_uc004dze.2_Silent_p.V222V	NM_018977	NP_061850	Q9NZ94	NLGN3_HUMAN	neuroligin 3	424	Extracellular (Potential).				neuron cell-cell adhesion|positive regulation of synaptogenesis|receptor-mediated endocytosis|social behavior|synapse assembly	cell surface|endocytic vesicle|integral to plasma membrane|synapse	neurexin binding|receptor activity			ovary(1)	1	Renal(35;0.156)					AGGATGGTGTCTCTGGCACTG	0.517													31	20					0	0	1	0	0
OGT	8473	broad.mit.edu	37	X	70764432	70764432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:70764432C>T	uc004eaa.1	+	4	695	c.478C>T	c.(478-480)CGC>TGC	p.R160C	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.R150C|OGT_uc004eac.2_5'Flank|OGT_uc004ead.2_5'Flank|OGT_uc011mpw.1_Missense_Mutation_p.R160C	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	160	TPR 4.				cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					GTACTGTGTTCGCAGTGACCT	0.398													3	15					0	0	1	0	0
OGT	8473	broad.mit.edu	37	X	70787583	70787583	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:70787583C>T	uc004eaa.1	+	20	3040	c.2823C>T	c.(2821-2823)ACC>ACT	p.T941T	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Silent_p.T931T|OGT_uc004eac.2_Silent_p.T802T|OGT_uc004ead.2_Silent_p.T560T	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	941					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					GGGCAGGGACCCCCATGGTGA	0.507													13	10					0	0	1	0	0
CXCR3	2833	broad.mit.edu	37	X	70836294	70836294	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:70836294C>T	uc004eaf.2	-	2	1096	c.1028G>A	c.(1027-1029)GGG>GAG	p.G343E	BCYRN1_uc011mpt.1_Intron|CXCR3_uc011mpx.1_Missense_Mutation_p.G390E	NM_001504	NP_001495	P49682	CXCR3_HUMAN	chemokine (C-X-C motif) receptor 3 isoform A	343	Cytoplasmic (Potential).				cell adhesion|cellular component movement|chemotaxis|elevation of cytosolic calcium ion concentration	cytoplasm|integral to plasma membrane	C-X-C chemokine receptor activity			ovary(2)|central_nervous_system(1)	3	Renal(35;0.156)					CCTCTGGAGCCCTCTCTGGTT	0.637													5	13					0	0	1	0	0
NHSL2	340527	broad.mit.edu	37	X	71360216	71360216	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:71360216G>A	uc011mqa.1	+	6	2818	c.2818G>A	c.(2818-2820)GAG>AAG	p.E940K	NHSL2_uc004eak.1_Missense_Mutation_p.E574K|NHSL2_uc010nli.2_Missense_Mutation_p.E709K	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	940											0	Renal(35;0.156)					AAGCCCAGGGGAGTCAACAGC	0.542													18	12					0	0	1	0	0
PHKA1	5255	broad.mit.edu	37	X	71825460	71825461	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:71825460_71825461GG>AA	uc004eax.3	-	24	2916_2917	c.2615_2616CC>TT	c.(2614-2616)CCC>CTT	p.P872L	PHKA1_uc004eay.3_Missense_Mutation_p.P872L|PHKA1_uc011mqi.1_Missense_Mutation_p.P813L	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	872					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					GCGCCTCATAGGGCAGAGGTCT	0.391													15	17					0	0	1	0	0
PHKA1	5255	broad.mit.edu	37	X	71842984	71842984	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:71842984C>T	uc004eax.3	-	18	2236	c.1935G>A	c.(1933-1935)ATG>ATA	p.M645I	PHKA1_uc004eay.3_Missense_Mutation_p.M645I|PHKA1_uc011mqi.1_Missense_Mutation_p.M645I	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	645					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					CATAATCATTCATCCAGTTGC	0.418													42	28					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72434244	72434244	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:72434244C>T	uc004ebi.2	-	1	441	c.85G>A	c.(85-87)GAA>AAA	p.E29K	NAP1L2_uc011mqj.1_Intron	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	29					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TCCAGATGTTCCCCGAGCCCT	0.562													26	21					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72434304	72434304	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:72434304C>T	uc004ebi.2	-	1	381	c.25G>A	c.(25-27)GAG>AAG	p.E9K	NAP1L2_uc011mqj.1_Intron	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	9					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TCTGACAGCTCCTTGCGGTTC	0.547													25	32					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72434306	72434306	+	Missense_Mutation	SNP	T	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:72434306T>C	uc004ebi.2	-	1	379	c.23A>G	c.(22-24)AAG>AGG	p.K8R	NAP1L2_uc011mqj.1_Intron	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	8					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TGACAGCTCCTTGCGGTTCTC	0.547													25	32					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73040873	73040873	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73040873G>A	uc004ebn.2	+	1		c.28834G>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						AACTGTGAAAGGAAGGCTTTT	0.373													10	20					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73042718	73042718	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73042718G>A	uc004ebn.2	+	1		c.30679G>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GCTACTCAATGAAGTTTCTTC	0.353													17	13					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73043525	73043525	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73043525C>T	uc004ebn.2	+	1		c.31486C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TTTTCCATCTCCTCAATCAGG	0.408													42	87					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73044380	73044380	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73044380C>T	uc004ebn.2	+	1		c.32341C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GTATTTAAACCCTTGGTTTGT	0.239													9	6					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73046475	73046475	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73046475G>A	uc004ebn.2	+	1		c.34436G>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GTAGGGTTTAGGGTTCTCATC	0.423													72	54					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73046521	73046521	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73046521C>T	uc004ebn.2	+	1		c.34482C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TTCTATCCTTCCTGGGTTCTG	0.468													81	52					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73046763	73046763	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73046763C>T	uc004ebn.2	+	1		c.34724C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						AGCCTTGAGACTTCCATCCAA	0.488													27	19					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73046780	73046780	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73046780C>T	uc004ebn.2	+	1		c.34741C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CCAACTCAGGCCTTCGGTCCA	0.493													27	23					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73063793	73063793	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73063793G>A	uc004ebm.1	-	1		c.8796C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CACCAGAAGGGGCCTTGGAGG	0.398													8	8					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73065742	73065742	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73065742C>T	uc004ebm.1	-	1		c.6847G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GAAAAGGGGCCTTGGTGATCA	0.512													49	45					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73066278	73066278	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73066278G>A	uc004ebm.1	-	1		c.6311C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GATCCCAGACGATTATAATCA	0.488													27	19					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73066477	73066477	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73066477G>A	uc004ebm.1	-	1		c.6112C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GGTCTTATGGGGTGGGCACTT	0.468													31	17					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73069424	73069424	+	RNA	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73069424G>A	uc004ebm.1	-	1		c.3165C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GCTCTCAATTGACATTCCCTA	0.393													17	13					0	0	1	0	0
SLC16A2	6567	broad.mit.edu	37	X	73749129	73749129	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73749129C>T	uc004ebt.2	+	5	1640	c.1474C>T	c.(1474-1476)CTT>TTT	p.L492F	SLC16A2_uc010nlr.1_Intron	NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	418	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	CGTCGTCTGTCTTTTCCTGGG	0.577													15	11					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960273	73960273	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73960273T>A	uc004eby.2	-	3	4736	c.4119A>T	c.(4117-4119)ACA>ACT	p.T1373T		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1373					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						ACTCCTGTGGTGTCCCAGCCA	0.458													43	29					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960618	73960618	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73960618C>T	uc004eby.2	-	3	4391	c.3774G>A	c.(3772-3774)TTG>TTA	p.L1258L		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1258					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TACATTCAGCCAATGTCTTCC	0.507													19	4					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960771	73960771	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73960771C>T	uc004eby.2	-	3	4238	c.3621G>A	c.(3619-3621)GGG>GGA	p.G1207G		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1207					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GTTTTTCAATCCCCTTGTTGT	0.438													28	18					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961518	73961518	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73961518G>A	uc004eby.2	-	3	3491	c.2874C>T	c.(2872-2874)CTC>CTT	p.L958L		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	958					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CATCAGATGGGAGTTGGGTAT	0.423													13	105					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962516	73962516	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73962516G>A	uc004eby.2	-	3	2493	c.1876C>T	c.(1876-1878)CGC>TGC	p.R626C		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	626					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTTCGTTTGCGAGCAGGTGGC	0.413													13	10					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73964162	73964163	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:73964162_73964163GG>AA	uc004eby.2	-	3	846_847	c.229_230CC>TT	c.(229-231)CCG>TTG	p.P77L		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	77					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity	p.P77L(1)		ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AGGAGAGGGCGGGCTCTGCATA	0.54													31	21					0	0	1	0	0
ABCB7	22	broad.mit.edu	37	X	74284974	74284974	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:74284974G>A	uc004eca.2	-	13	1787	c.1762C>T	c.(1762-1764)CAT>TAT	p.H588Y	ABCB7_uc004ebz.2_Missense_Mutation_p.H589Y|ABCB7_uc011mqn.1_Missense_Mutation_p.H562Y|ABCB7_uc010nls.2_Missense_Mutation_p.H549Y|ABCB7_uc010nlt.2_Missense_Mutation_p.H548Y	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	588	ABC transporter.				cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						ATTGCATCATGAAGTCCAGCT	0.433													18	12					0	0	1	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74641768	74641768	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:74641768C>T	uc004ecg.2	-	9	1272	c.794G>A	c.(793-795)GGC>GAC	p.G265D	ZDHHC15_uc004ech.2_Missense_Mutation_p.G256D|ZDHHC15_uc011mqo.1_RNA	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	265						integral to membrane	zinc ion binding			ovary(2)	2						CTTGATGAAGCCAAGGTTGAA	0.433													21	28					0	0	1	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74644533	74644533	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:74644533G>A	uc004ecg.2	-	8	1168	c.690C>T	c.(688-690)CTC>CTT	p.L230L	ZDHHC15_uc004ech.2_Silent_p.L221L|ZDHHC15_uc011mqo.1_RNA	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	230	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(2)	2						GGTAACCAAAGAGAATCACAA	0.383													15	12					0	0	1	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74644535	74644535	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:74644535G>A	uc004ecg.2	-	8	1166	c.688C>T	c.(688-690)CTC>TTC	p.L230F	ZDHHC15_uc004ech.2_Missense_Mutation_p.L221F|ZDHHC15_uc011mqo.1_RNA	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	230	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(2)	2						TAACCAAAGAGAATCACAAGG	0.378													15	13					0	0	1	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74698746	74698746	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:74698746G>A	uc004ecg.2	-	3	716	c.238C>T	c.(238-240)CCA>TCA	p.P80S	ZDHHC15_uc004ech.2_Missense_Mutation_p.P71S|ZDHHC15_uc011mqo.1_RNA|ZDHHC15_uc004eci.2_Missense_Mutation_p.P71S	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	80						integral to membrane	zinc ion binding			ovary(2)	2						GGCTGCTGTGGGAGTGTAAAG	0.348													13	9					0	0	1	0	0
MAGEE2	139599	broad.mit.edu	37	X	75003386	75003386	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:75003386C>T	uc004ecj.1	-	1	1686	c.1501G>A	c.(1501-1503)GAG>AAG	p.E501K		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	501	MAGE 2.									ovary(1)|skin(1)	2						TCCACAGCCTCCCTATATTGT	0.488													30	16					0	0	1	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004186	75004186	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:75004186C>T	uc004ecj.1	-	1	886	c.701G>A	c.(700-702)CGA>CAA	p.R234Q		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	234	MAGE 1.									ovary(1)|skin(1)	2						CTCCAAGAATCGCATGCACAC	0.488													25	26					0	0	1	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004535	75004535	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:75004535G>A	uc004ecj.1	-	1	537	c.352C>T	c.(352-354)CTC>TTC	p.L118F		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	118	MAGE 1.									ovary(1)|skin(1)	2						TACTCTCTGAGAAACTCCAGC	0.507													12	19					0	0	1	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004631	75004631	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:75004631C>T	uc004ecj.1	-	1	441	c.256G>A	c.(256-258)GAC>AAC	p.D86N		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	86										ovary(1)|skin(1)	2						TCTAGAGGGTCATGGACCCTG	0.547													18	24					0	0	1	0	0
MAGEE1	57692	broad.mit.edu	37	X	75649270	75649270	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:75649270C>T	uc004ecm.1	+	1	1154	c.947C>T	c.(946-948)TCG>TTG	p.S316L		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	316	Pro-rich.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						GGTGAGGGATCGAGCACCTCC	0.711													4	19					0	0	1	0	0
MAGEE1	57692	broad.mit.edu	37	X	75649546	75649546	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:75649546C>T	uc004ecm.1	+	1	1430	c.1223C>T	c.(1222-1224)CCT>CTT	p.P408L		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	408	Pro-rich.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						CTGCCTAACCCTGGTGAGGGC	0.627													4	16					0	0	1	0	0
MAGEE1	57692	broad.mit.edu	37	X	75649612	75649612	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:75649612C>T	uc004ecm.1	+	1	1496	c.1289C>T	c.(1288-1290)TCC>TTC	p.S430F		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	430						dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						TCCAAGTGTTCCCTTGTTTTG	0.572													10	20					0	0	1	0	0
ATRX	546	broad.mit.edu	37	X	76777849	76777849	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:76777849G>A	uc004ecp.3	-	32	7099	c.6867C>T	c.(6865-6867)TTC>TTT	p.F2289F	ATRX_uc004ecq.3_Silent_p.F2251F|ATRX_uc004eco.3_Silent_p.F2074F	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2289					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTGGTATGTTGAAACGCATGG	0.368			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						39	27					0	0	1	0	0
ATRX	546	broad.mit.edu	37	X	76939021	76939021	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:76939021G>A	uc004ecp.3	-	9	1959	c.1727C>T	c.(1726-1728)TCA>TTA	p.S576L	ATRX_uc004ecq.3_Missense_Mutation_p.S538L|ATRX_uc004eco.3_Missense_Mutation_p.S361L|ATRX_uc004ecr.2_Intron|ATRX_uc010nlx.1_Intron|ATRX_uc010nly.1_Missense_Mutation_p.S521L	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	576					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TGTAGTTTTTGATTTAATACC	0.358			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						43	165					0	0	1	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913356	77913356	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:77913356G>A	uc004edc.1	-	2	858	c.562C>T	c.(562-564)CCC>TCC	p.P188S		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	188	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						GGCTCCTGGGGAGGTGGAAGC	0.542													21	18					0	0	1	0	0
FAM46D	169966	broad.mit.edu	37	X	79698625	79698625	+	Missense_Mutation	SNP	A	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:79698625A>T	uc004edl.1	+	5	921	c.587A>T	c.(586-588)AAA>ATA	p.K196I	FAM46D_uc004edm.1_Missense_Mutation_p.K196I	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	196										lung(2)	2						AAGCTAACCAAAGAATCCTAT	0.403													38	18					0	0	1	0	0
BRWD3	254065	broad.mit.edu	37	X	79939559	79939559	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:79939559G>A	uc004edt.2	-	37	4446	c.4183C>T	c.(4183-4185)CGC>TGC	p.R1395C	BRWD3_uc010nmi.1_Intron|BRWD3_uc004edo.2_Missense_Mutation_p.R991C|BRWD3_uc004edp.2_Missense_Mutation_p.R1224C|BRWD3_uc004edq.2_Missense_Mutation_p.R991C|BRWD3_uc010nmj.1_Missense_Mutation_p.R991C|BRWD3_uc004edr.2_Missense_Mutation_p.R1065C|BRWD3_uc004eds.2_Missense_Mutation_p.R991C|BRWD3_uc004edu.2_Missense_Mutation_p.R1065C|BRWD3_uc004edv.2_Missense_Mutation_p.R991C|BRWD3_uc004edw.2_Missense_Mutation_p.R991C|BRWD3_uc004edx.2_Missense_Mutation_p.R991C|BRWD3_uc004edy.2_Missense_Mutation_p.R991C|BRWD3_uc004edz.2_Missense_Mutation_p.R1065C|BRWD3_uc004eea.2_Missense_Mutation_p.R1065C|BRWD3_uc004eeb.2_Missense_Mutation_p.R991C	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1395	Bromo 2.									ovary(4)	4						AATATTTGGCGAACATCCTTA	0.348													11	42					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	80185590	80185590	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:80185590G>A	uc004eec.1	+	1	663	c.489G>A	c.(487-489)GTG>GTA	p.V163V						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		ACCAGAAAGTGAACAAGAAGT	0.488													11	57					0	0	1	0	0
CYLC1	1538	broad.mit.edu	37	X	83128432	83128432	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:83128432C>T	uc004eei.1	+	4	737	c.716C>T	c.(715-717)TCA>TTA	p.S239L	CYLC1_uc004eeh.1_Missense_Mutation_p.S238L	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	239					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						GAGATTTGCTCAGAAAATAGT	0.333													8	28					0	0	1	0	0
CYLC1	1538	broad.mit.edu	37	X	83129338	83129338	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:83129338C>T	uc004eei.1	+	4	1643	c.1622C>T	c.(1621-1623)TCA>TTA	p.S541L	CYLC1_uc004eeh.1_Missense_Mutation_p.S540L	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	541	8.|8 X approximate tandem repeats.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						ATCAAAGGTTCAGATACTGAA	0.373													20	13					0	0	1	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83411176	83411176	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:83411176G>A	uc004eej.1	-	3	242	c.165C>T	c.(163-165)ATC>ATT	p.I55I	RPS6KA6_uc011mqt.1_Silent_p.I55I|RPS6KA6_uc011mqu.1_5'UTR|RPS6KA6_uc010nmo.1_RNA	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	55					axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						GAGTAATAGGGATTTCTTTAA	0.363													8	11					0	0	1	0	0
SATL1	340562	broad.mit.edu	37	X	84363139	84363139	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:84363139C>T	uc011mqx.1	-	1	836	c.836G>A	c.(835-837)TGG>TAG	p.W279*	SATL1_uc004een.2_Nonsense_Mutation_p.W279*	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	92	Gln-rich.						N-acetyltransferase activity			breast(2)	2						GCTTGCACTCCATTGGTTCAT	0.438													13	51					0	0	1	0	0
SATL1	340562	broad.mit.edu	37	X	84363153	84363153	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:84363153C>T	uc011mqx.1	-	1	822	c.822G>A	c.(820-822)ATG>ATA	p.M274I	SATL1_uc004een.2_Missense_Mutation_p.M274I	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	87	Gln-rich.						N-acetyltransferase activity			breast(2)	2						GGTTCATGTCCATTTGGTTCA	0.448													19	52					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84510501	84510501	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:84510501G>A	uc004eeo.2	+	4	663	c.316G>A	c.(316-318)GAA>AAA	p.E106K	ZNF711_uc004eep.2_Missense_Mutation_p.E106K|ZNF711_uc004eeq.2_Missense_Mutation_p.E106K	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	106					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						GGATTTAGAGGAAGATGATGG	0.438													63	48					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84520207	84520207	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:84520207G>A	uc004eeo.2	+	6	1209	c.862G>A	c.(862-864)GAG>AAG	p.E288K	ZNF711_uc004eep.2_Missense_Mutation_p.E288K|ZNF711_uc004eeq.2_Missense_Mutation_p.E288K|ZNF711_uc011mqy.1_5'UTR	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	288					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						AATGCAGCGGGAGAAGATGGT	0.418													41	29					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84523312	84523312	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:84523312G>A	uc004eeo.2	+	7	1276	c.929G>A	c.(928-930)AGA>AAA	p.R310K	ZNF711_uc004eep.2_Missense_Mutation_p.R310K|ZNF711_uc004eeq.2_Missense_Mutation_p.R356K|ZNF711_uc011mqy.1_5'UTR	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	310					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						GATGAAAGAAGAGTTTCCCGA	0.303													5	13					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84526469	84526469	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:84526469C>T	uc004eeo.2	+	9	2268	c.1921C>T	c.(1921-1923)CAT>TAT	p.H641Y	ZNF711_uc004eep.2_Missense_Mutation_p.H641Y|ZNF711_uc004eeq.2_Missense_Mutation_p.H687Y|ZNF711_uc011mqy.1_Missense_Mutation_p.H240Y	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	641	C2H2-type 8.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TAGTGATATCCATAAGGGTAG	0.388													17	14					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84537235	84537235	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:84537235C>T	uc004eer.2	-	16	1884	c.1738G>A	c.(1738-1740)GAG>AAG	p.E580K	POF1B_uc004ees.2_Missense_Mutation_p.E580K	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	580							actin binding				0						TCTGTTTTCTCAATCACAATA	0.368													16	14					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84559348	84559348	+	Splice_Site	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:84559348C>T	uc004eer.2	-	14	1712	c.1566_splice	c.e14+1	p.E522_splice	POF1B_uc004ees.2_Splice_Site_p.E522_splice	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B								actin binding				0						TCCTTTTATACCTCTGACTGA	0.403													26	43					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84585980	84585980	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:84585980C>T	uc004eer.2	-	7	975	c.829G>A	c.(829-831)GAA>AAA	p.E277K	POF1B_uc004ees.2_Missense_Mutation_p.E277K	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	277							actin binding				0						TGCAAATGTTCTAATAAGCAG	0.363													19	23					0	0	1	0	0
DACH2	117154	broad.mit.edu	37	X	85950141	85950141	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:85950141C>T	uc004eew.2	+	5	1060	c.890C>T	c.(889-891)CCA>CTA	p.P297L	DACH2_uc004eex.2_Missense_Mutation_p.P284L|DACH2_uc010nmq.2_Missense_Mutation_p.P163L|DACH2_uc011mra.1_Missense_Mutation_p.P130L|DACH2_uc010nmr.2_Missense_Mutation_p.P78L	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	297					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						GGGGGTGCTCCAACCCTCAAT	0.493													11	6					0	0	1	0	0
DACH2	117154	broad.mit.edu	37	X	86068206	86068206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:86068206G>A	uc004eew.2	+	9	1633	c.1463G>A	c.(1462-1464)CGA>CAA	p.R488Q	DACH2_uc004eex.2_Missense_Mutation_p.R475Q|DACH2_uc010nmq.2_Missense_Mutation_p.R354Q|DACH2_uc011mra.1_Missense_Mutation_p.R321Q|DACH2_uc010nmr.2_Missense_Mutation_p.R269Q|DACH2_uc004eey.2_Missense_Mutation_p.R181Q|DACH2_uc004eez.2_Missense_Mutation_p.R171Q	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	488	Potential.|DACHbox-C.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						AAGGAGCTGCGACTGGAGCTC	0.413													15	7					0	0	1	0	0
KLHL4	56062	broad.mit.edu	37	X	86772975	86772975	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:86772975C>T	uc004efb.2	+	1	261	c.79C>T	c.(79-81)CAA>TAA	p.Q27*	KLHL4_uc004efa.2_Nonsense_Mutation_p.Q27*	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	27						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TCATCCTTTTCAAGGTTCCAC	0.493													46	22					0	0	1	0	0
TGIF2LX	90316	broad.mit.edu	37	X	89177317	89177317	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:89177317C>T	uc004efe.2	+	2	282	c.233C>T	c.(232-234)CCT>CTT	p.P78L		NM_138960	NP_620410	Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	78	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						AAGGCCTACCCTTCAGAAGAA	0.478													72	37					0	0	1	0	0
TGIF2LX	90316	broad.mit.edu	37	X	89177553	89177553	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:89177553C>T	uc004efe.2	+	2	518	c.469C>T	c.(469-471)CTG>TTG	p.L157L		NM_138960	NP_620410	Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	157						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TGTACAAAGCCTGCCCCTGTG	0.612													9	29					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91134173	91134173	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:91134173C>T	uc004efk.1	+	2	3779	c.2934C>T	c.(2932-2934)ATC>ATT	p.I978I	PCDH11X_uc004efl.1_Silent_p.I978I|PCDH11X_uc004efo.1_Silent_p.I978I|PCDH11X_uc010nmv.1_Silent_p.I978I|PCDH11X_uc004efm.1_Silent_p.I978I|PCDH11X_uc004efn.1_Silent_p.I978I|PCDH11X_uc004efh.1_Silent_p.I978I|PCDH11X_uc004efj.1_Silent_p.I978I	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	978	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						GTGACTCTATCTCCAAGTGTT	0.517													88	62					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91873421	91873421	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:91873421C>T	uc004efk.1	+	7	4371	c.3526C>T	c.(3526-3528)CCA>TCA	p.P1176S	PCDH11X_uc004efl.1_Missense_Mutation_p.P1166S|PCDH11X_uc004efo.1_Missense_Mutation_p.P1139S|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Missense_Mutation_p.P1168S|PCDH11X_uc004efn.1_Missense_Mutation_p.P1158S	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1176	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CCACAGCCCACCACTGTCACA	0.567													40	25					0	0	1	0	0
NAP1L3	4675	broad.mit.edu	37	X	92927586	92927586	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:92927586C>T	uc004efq.2	-	1	1023	c.718G>A	c.(718-720)GAC>AAC	p.D240N	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	240	Glu-rich.				nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						TCCATACAGTCTTTAGAATCT	0.418													67	43					0	0	1	0	0
NAP1L3	4675	broad.mit.edu	37	X	92928218	92928218	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:92928218G>A	uc004efq.2	-	1	391	c.86C>T	c.(85-87)TCT>TTT	p.S29F	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	29	Ser-rich.				nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						TTCTTCCCCAGAATCACTAGT	0.289													19	21					0	0	1	0	0
FAM133A	286499	broad.mit.edu	37	X	92964424	92964424	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:92964424G>A	uc004efr.1	+	4	319	c.6G>A	c.(4-6)GGG>GGA	p.G2G		NM_173698	NP_775969	Q8N9E0	F133A_HUMAN	hypothetical protein LOC286499	2											0						GCACCATGGGGAAGCGGGATA	0.443													11	14					0	0	1	0	0
DIAPH2	1730	broad.mit.edu	37	X	96213026	96213026	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:96213026C>T	uc004efu.3	+	16	2210	c.1814C>T	c.(1813-1815)CCA>CTA	p.P605L	DIAPH2_uc004eft.3_Missense_Mutation_p.P605L	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	605	FH1.|Poly-Pro.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						GGACCTCCTCCACCACCACCC	0.517													21	16					0	0	1	0	0
PCDH19	57526	broad.mit.edu	37	X	99551337	99551337	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:99551337G>A	uc010nmz.2	-	6	5061	c.3385C>T	c.(3385-3387)CTG>TTG	p.L1129L	PCDH19_uc004efw.3_Silent_p.L1081L|PCDH19_uc004efx.3_Silent_p.L1082L	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1129	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CCTTCCTTCAGAATGGGGCTG	0.512													60	50					0	0	1	0	0
PCDH19	57526	broad.mit.edu	37	X	99551856	99551856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:99551856G>A	uc010nmz.2	-	6	4542	c.2866C>T	c.(2866-2868)CAT>TAT	p.H956Y	PCDH19_uc004efw.3_Missense_Mutation_p.H908Y|PCDH19_uc004efx.3_Missense_Mutation_p.H909Y	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	956	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						TCCCGGCAATGAAATCCTTCA	0.473													30	23					0	0	1	0	0
PCDH19	57526	broad.mit.edu	37	X	99658619	99658619	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:99658619C>T	uc010nmz.2	-	2	3867	c.2191G>A	c.(2191-2193)GGA>AGA	p.G731R	PCDH19_uc004efw.3_Intron|PCDH19_uc004efx.3_Intron	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	731	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CTGTTTTGTCCTTTTATAAAA	0.428													8	4					0	0	1	0	0
PCDH19	57526	broad.mit.edu	37	X	99661607	99661607	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:99661607G>A	uc010nmz.2	-	1	3665	c.1989C>T	c.(1987-1989)TCC>TCT	p.S663S	PCDH19_uc004efw.3_Silent_p.S663S|PCDH19_uc004efx.3_Silent_p.S663S	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	663	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CGAGAGCAGGGGACAAGTAGA	0.522													6	14					0	0	1	0	0
PCDH19	57526	broad.mit.edu	37	X	99662102	99662102	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:99662102C>T	uc010nmz.2	-	1	3170	c.1494G>A	c.(1492-1494)CGG>CGA	p.R498R	PCDH19_uc004efw.3_Silent_p.R498R|PCDH19_uc004efx.3_Silent_p.R498R	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	498	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CAGGCATGTCCCGCACCTGCG	0.582													8	54					0	0	1	0	0
PCDH19	57526	broad.mit.edu	37	X	99662311	99662311	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:99662311C>T	uc010nmz.2	-	1	2961	c.1285G>A	c.(1285-1287)GGC>AGC	p.G429S	PCDH19_uc004efw.3_Missense_Mutation_p.G429S|PCDH19_uc004efx.3_Missense_Mutation_p.G429S	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	429	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						ATGGGCACGCCGCCGTCGCGT	0.552													12	69					0	0	1	0	0
SRPX2	27286	broad.mit.edu	37	X	99917296	99917296	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:99917296G>A	uc004egb.2	+	4	767	c.287G>A	c.(286-288)CGA>CAA	p.R96Q		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	96	Sushi 1.				angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						CGGGGCTTTCGATTGATTGGA	0.537													18	79					0	0	1	0	0
SRPX2	27286	broad.mit.edu	37	X	99925834	99925834	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:99925834C>T	uc004egb.2	+	11	1728	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	416					angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						GCTCCTACTTCAACATGGTGT	0.522											OREG0019890	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	26					0	0	1	0	0
SYTL4	94121	broad.mit.edu	37	X	99934391	99934391	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:99934391C>T	uc004egd.3	-	17	1933	c.1577G>A	c.(1576-1578)GGA>GAA	p.G526E	SYTL4_uc004egc.2_5'Flank|SYTL4_uc010nnb.2_Missense_Mutation_p.G198E|SYTL4_uc010nnc.2_Missense_Mutation_p.G526E|SYTL4_uc004ege.3_Missense_Mutation_p.G526E|SYTL4_uc004egf.3_Missense_Mutation_p.G526E	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	526	C2 2.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTGGAGCTCTCCCCCTTCCCC	0.512													31	14					0	0	1	0	0
NOX1	27035	broad.mit.edu	37	X	100105173	100105173	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:100105173C>T	uc004egj.2	-	9	1306	c.1100G>A	c.(1099-1101)AGG>AAG	p.R367K	NOX1_uc004egl.3_Missense_Mutation_p.R367K|NOX1_uc010nne.2_Missense_Mutation_p.R330K	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	367	FAD-binding FR-type.|Extracellular (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						TTCGAAAGCCCTTATGAGATT	0.473													13	25					0	0	1	0	0
NOX1	27035	broad.mit.edu	37	X	100117458	100117458	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:100117458C>T	uc004egj.2	-	6	800	c.594G>A	c.(592-594)AGG>AGA	p.R198R	uc010nnf.2_Intron|NOX1_uc004egl.3_Silent_p.R198R|NOX1_uc010nne.2_Silent_p.R161R	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	198	Cytoplasmic (Potential).|Ferric oxidoreductase.				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						CAAAATAACTCCTCCGGATGA	0.438													114	68					0	0	1	0	0
NOX1	27035	broad.mit.edu	37	X	100125744	100125744	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:100125744C>T	uc004egj.2	-	2	311	c.105G>A	c.(103-105)AAG>AAA	p.K35K	uc010nnf.2_Intron|NOX1_uc004egl.3_Silent_p.K35K|NOX1_uc010nne.2_Silent_p.K35K	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	35	Extracellular (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						ATTTGTCGGCCTTCTCATATT	0.378													38	42					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	100142954	100142954	+	RNA	SNP	A	T	T	rs62600389	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:100142954A>T	uc010nnf.2	-	1		c.664T>A			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		tcattcccacagaaaccacct	0.174													4	40					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	100142966	100142966	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:100142966C>T	uc010nnf.2	-	1		c.652G>A			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		aaaccacctccacaaccacca	0.199													30	15					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	100143108	100143108	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:100143108C>T	uc010nnf.2	-	1		c.510G>A			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		CAATCTTATCCATGGAGTCAT	0.443													39	19					0	0	1	0	0
XKRX	402415	broad.mit.edu	37	X	100177947	100177947	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:100177947C>T	uc004egn.2	-	2	1044	c.439G>A	c.(439-441)GAG>AAG	p.E147K	XKRX_uc011mre.1_Intron	NM_212559	NP_997724	Q6PP77	XKR2_HUMAN	XK, Kell blood group complex subunit-related,	147						integral to membrane|plasma membrane				breast(1)	1						ATCAGCACCTCCTCGCCATCT	0.537													71	60					0	0	1	0	0
TMEM35	59353	broad.mit.edu	37	X	100349772	100349772	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:100349772C>T	uc004egw.2	+	2	487	c.331C>T	c.(331-333)CCT>TCT	p.P111S		NM_021637	NP_067650	Q53FP2	TMM35_HUMAN	transmembrane protein 35	111						cytoplasmic membrane-bounded vesicle|integral to membrane|peroxisomal membrane					0						GGTCGGTGATCCTCTCAAACG	0.567													45	46					0	0	1	0	0
NXF5	55998	broad.mit.edu	37	X	101095769	101095769	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:101095769G>A	uc011mrk.1	-	9	939	c.579C>T	c.(577-579)TCC>TCT	p.S193S	NXF5_uc004eih.1_RNA|NXF5_uc004eii.1_RNA|NXF5_uc004eij.1_RNA|NXF5_uc004eik.1_RNA|NXF5_uc004eil.1_RNA	NM_032946	NP_116564	Q9H1B4	NXF5_HUMAN	nuclear RNA export factor 5	193	LRR 2.				mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nucleus	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						CCTTATTTTTGGAGAGATTCA	0.498													4	24					0	0	1	0	0
TCEAL2	140597	broad.mit.edu	37	X	101381827	101381827	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:101381827G>A	uc004eip.2	+	3	244	c.25G>A	c.(25-27)GAA>AAA	p.E9K		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	9					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CAATGAAAATGAAGGAATGCC	0.463													25	18					0	0	1	0	0
BEX5	340542	broad.mit.edu	37	X	101409099	101409099	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:101409099C>T	uc010nnz.2	-	3	441	c.139G>A	c.(139-141)GGA>AGA	p.G47R	BEX5_uc004eir.2_Missense_Mutation_p.G47R	NM_001159560	NP_001153032	Q5H9J7	BEX5_HUMAN	brain expressed, X-linked 5	47						cytoplasm				upper_aerodigestive_tract(1)	1						ACATCCTCTCCAAAACCCGGG	0.517													42	35					0	0	1	0	0
NXF2B	728343	broad.mit.edu	37	X	101620165	101620165	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:101620165G>A	uc004ejb.3	-	27	3153	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	NXF2B_uc004eiz.3_Silent_p.F339F|NXF2B_uc004eja.3_Silent_p.F427F|NXF2_uc004eiy.3_Silent_p.F427F	NM_001099686	NP_001093156	Q9GZY0	NXF2_HUMAN	nuclear RNA export factor 2B	427	NTF2.				mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|RNA binding			ovary(1)	1						CCTTGGGGTCGAAGGGAATAG	0.572													19	56					0	0	1	0	0
NXF2B	728343	broad.mit.edu	37	X	101620169	101620169	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:101620169G>A	uc004ejb.3	-	27	3149	c.1277C>T	c.(1276-1278)CCC>CTC	p.P426L	NXF2B_uc004eiz.3_Missense_Mutation_p.P338L|NXF2B_uc004eja.3_Missense_Mutation_p.P426L|NXF2_uc004eiy.3_Missense_Mutation_p.P426L	NM_001099686	NP_001093156	Q9GZY0	NXF2_HUMAN	nuclear RNA export factor 2B	426	NTF2.				mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|RNA binding			ovary(1)	1						GGGGTCGAAGGGAATAGCCAA	0.572													20	53					0	0	1	0	0
GPRASP2	114928	broad.mit.edu	37	X	101970347	101970347	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:101970347C>T	uc004ejk.2	+	4	1884	c.550C>T	c.(550-552)CCT>TCT	p.P184S	GPRASP2_uc004ejl.2_Missense_Mutation_p.P184S|GPRASP2_uc004ejm.2_Missense_Mutation_p.P184S|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	184						cytoplasm	protein binding			ovary(1)	1						TGAAACCTTTCCTGGCACCCA	0.532													78	43					0	0	1	0	0
RAB40AL	282808	broad.mit.edu	37	X	102193023	102193023	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:102193023C>T	uc004ejs.2	+	1	824	c.777C>T	c.(775-777)ATC>ATT	p.I259I		NM_001031834	NP_001027004	P0C0E4	RB40L_HUMAN	RAB40A, member RAS oncogene family-like	259					protein transport|small GTPase mediated signal transduction	mitochondrion|plasma membrane	GTP binding			ovary(2)	2						AAGTGAAGATCGTCTGCCCAC	0.537													47	39					0	0	1	0	0
BEX1	55859	broad.mit.edu	37	X	102318005	102318005	+	Missense_Mutation	SNP	C	T	T	rs1045082		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:102318005C>T	uc004ejt.1	-	3	438	c.198G>A	c.(196-198)ATG>ATA	p.M66I		NM_018476	NP_060946	Q9HBH7	BEX1_HUMAN	brain expressed, X-linked 1	66					cell differentiation|nervous system development	cytoplasm|nucleus				ovary(1)	1						GCCTATGCATCATATCCCATC	0.517													117	62					0	0	1	0	0
NXF3	56000	broad.mit.edu	37	X	102334726	102334726	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:102334726G>A	uc004eju.2	-	13	1196	c.1125C>T	c.(1123-1125)TCC>TCT	p.S375S	NXF3_uc010noi.1_Silent_p.S225S	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	375	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GAATGCTCAGGGAGAAGCAGG	0.547													47	39					0	0	1	0	0
H2BFWT	158983	broad.mit.edu	37	X	103267933	103267933	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:103267933C>T	uc004elr.2	-	1	324	c.300G>A	c.(298-300)CGG>CGA	p.R100R		NM_001002916	NP_001002916	Q7Z2G1	H2BWT_HUMAN	H2B histone family, member W, testis-specific	100					nucleosome assembly	nuclear membrane|nucleosome	DNA binding			ovary(1)	1						TCACGGCCTCCCGGGAAAGGC	0.637													13	18					0	0	1	0	0
H2BFWT	158983	broad.mit.edu	37	X	103268164	103268164	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:103268164C>T	uc004elr.2	-	1	93	c.69G>A	c.(67-69)ATG>ATA	p.M23I		NM_001002916	NP_001002916	Q7Z2G1	H2BWT_HUMAN	H2B histone family, member W, testis-specific	23					nucleosome assembly	nuclear membrane|nucleosome	DNA binding			ovary(1)	1						AGGCAGTGGCCATTAGATGGC	0.617													13	13					0	0	1	0	0
H2BFM	286436	broad.mit.edu	37	X	103294884	103294884	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:103294884C>T	uc004els.1	+	1	369	c.341C>T	c.(340-342)TCC>TTC	p.S114F						RecName: Full=Histone H2B type F-M; AltName: Full=H2B.s; AltName: Full=H2B/s;											ovary(1)	1						ACCATCACCTCCCGGGACATC	0.617													5	5					0	0	1	0	0
ESX1	80712	broad.mit.edu	37	X	103498964	103498964	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:103498964C>T	uc004ely.2	-	2	435	c.377G>A	c.(376-378)GGG>GAG	p.G126E		NM_153448	NP_703149	Q8N693	ESX1_HUMAN	extraembryonic, spermatogenesis, homeobox	126					negative regulation of transcription, DNA-dependent|regulation of cell cycle	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGTTTGTGGCCCCTCCGCCGG	0.662													8	41					0	0	1	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104440363	104440363	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:104440363G>A	uc004elz.1	+	3	1045	c.289G>A	c.(289-291)GAG>AAG	p.E97K		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	97	Ig-like C2-type 1.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GATGAGCAAAGAGGAAGATTC	0.448													35	24					0	0	1	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104512146	104512146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:104512146G>A	uc004elz.1	+	5	1375	c.619G>A	c.(619-621)GAA>AAA	p.E207K		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	207	Ig-like C2-type 2.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						AGTTCAAGAAGAAGATGGAGG	0.333													20	26					0	0	1	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104999239	104999239	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:104999239C>T	uc004elz.1	+	10	2017	c.1261C>T	c.(1261-1263)CCT>TCT	p.P421S		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	421	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						CTGTGACAATCCTGAAGAAGA	0.388													47	38					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105152872	105152872	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:105152872C>T	uc004emd.2	+	13	1542	c.1239C>T	c.(1237-1239)GCC>GCT	p.A413A	NRK_uc010npc.1_Silent_p.A81A	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	413	Gln-rich.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						AGGGAGCAGCCAGGGTATTCA	0.587										HNSCC(51;0.14)			16	14					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105153049	105153049	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:105153049G>A	uc004emd.2	+	13	1719	c.1416G>A	c.(1414-1416)CGG>CGA	p.R472R	NRK_uc010npc.1_Silent_p.R140R	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	472	Gln-rich.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						CACGACTACGGAGGGCAGCCA	0.562										HNSCC(51;0.14)			11	18					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105167206	105167206	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:105167206G>A	uc004emd.2	+	18	3010	c.2707G>A	c.(2707-2709)GAT>AAT	p.D903N	NRK_uc010npc.1_Missense_Mutation_p.D571N	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	903							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						CTTCCGGAATGATTGGTTAAC	0.373										HNSCC(51;0.14)			24	24					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105168911	105168911	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:105168911G>A	uc004emd.2	+	19	3503	c.3200G>A	c.(3199-3201)CGA>CAA	p.R1067Q	NRK_uc010npc.1_Missense_Mutation_p.R735Q	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1067							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GGAGTCGTTCGAACCAGTGAA	0.493										HNSCC(51;0.14)			36	18					0	0	1	0	0
SERPINA7	6906	broad.mit.edu	37	X	105280812	105280812	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:105280812G>A	uc004eme.1	-	1	254	c.238C>T	c.(238-240)CTT>TTT	p.L80F	SERPINA7_uc010npd.2_Missense_Mutation_p.L80F|SERPINA7_uc010npe.1_Missense_Mutation_p.L80F	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	80					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	CCAAAGGAAAGCATAACCAAA	0.498													30	30					0	0	1	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450876	105450876	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:105450876C>T	uc004emf.1	+	4	2100	c.1451C>T	c.(1450-1452)TCT>TTT	p.S484F	MUM1L1_uc004emg.1_Missense_Mutation_p.S484F	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	484										ovary(2)|pancreas(1)|skin(1)	4						GGTTGTGGTTCTTTCACGGGC	0.393													14	26					0	0	1	0	0
CXorf41	139212	broad.mit.edu	37	X	106482183	106482183	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:106482183C>T	uc004enc.2	+	6	523	c.461C>T	c.(460-462)TCT>TTT	p.S154F	CXorf41_uc004end.2_Missense_Mutation_p.S154F	NM_173494	NP_775765	Q9NQM4	CX041_HUMAN	hypothetical protein LOC139212	154											0						ACAAACCCTTCTGATATTCAA	0.299													27	12					0	0	1	0	0
TEX13B	56156	broad.mit.edu	37	X	107224759	107224759	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107224759C>T	uc004enn.1	-	3	583	c.490G>A	c.(490-492)GCT>ACT	p.A164T		NM_031273	NP_112563	Q9BXU2	TX13B_HUMAN	testis expressed 13B	164										ovary(1)	1						AACACTGTAGCCTGGCCCTGT	0.642													58	48					0	0	1	0	0
VSIG1	340547	broad.mit.edu	37	X	107310234	107310234	+	Silent	SNP	C	T	T	rs138849840	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107310234C>T	uc004eno.2	+	3	443	c.282C>T	c.(280-282)AAC>AAT	p.N94N	VSIG1_uc011msk.1_Silent_p.N130N	NM_182607	NP_872413	Q86XK7	VSIG1_HUMAN	V-set and immunoglobulin domain containing 1	94	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CAGGGTCCAACGATCCAGGTA	0.438													6	61					0	0	1	0	0
ATG4A	115201	broad.mit.edu	37	X	107393513	107393513	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107393513C>T	uc004enr.2	+	10	1069	c.946C>T	c.(946-948)CCT>TCT	p.P316S	ATG4A_uc004ent.2_Missense_Mutation_p.P254S|ATG4A_uc004ens.2_Missense_Mutation_p.P232S|ATG4A_uc011msl.1_Missense_Mutation_p.P170S|ATG4A_uc010npi.2_RNA|ATG4A_uc004enu.2_Missense_Mutation_p.P232S|COL4A6_uc011msm.1_Intron	NM_052936	NP_443168	Q8WYN0	ATG4A_HUMAN	autophagy-related cysteine endopeptidase 2	316					autophagy|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity			pancreas(1)	1						AAACCTGGATCCTTCAGTTGC	0.488													22	104					0	0	1	0	0
COL4A6	1288	broad.mit.edu	37	X	107407872	107407872	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107407872C>T	uc004enw.3	-	40	4133	c.4030G>A	c.(4030-4032)GAC>AAC	p.D1344N	COL4A6_uc004env.3_Missense_Mutation_p.D1343N|COL4A6_uc011msn.1_Missense_Mutation_p.D1319N|COL4A6_uc010npk.2_Intron|COL4A6_uc010npj.2_5'Flank	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1344	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						AATCCTGGGTCTCCAGGTGGC	0.597									Alport_syndrome_with_Diffuse_Leiomyomatosis				62	43					0	0	1	0	0
COL4A6	1288	broad.mit.edu	37	X	107417675	107417675	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107417675C>T	uc004enw.3	-	31	3239	c.3136G>A	c.(3136-3138)GAA>AAA	p.E1046K	COL4A6_uc004env.3_Missense_Mutation_p.E1045K|COL4A6_uc011msn.1_Missense_Mutation_p.E1045K|COL4A6_uc010npk.2_Missense_Mutation_p.E1045K	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1046	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CTTACACTTTCTCCTGGCATT	0.512									Alport_syndrome_with_Diffuse_Leiomyomatosis				18	16					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107811990	107811990	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107811990G>A	uc004enz.1	+	6	525	c.323G>A	c.(322-324)GGA>GAA	p.G108E	COL4A5_uc011mso.1_Missense_Mutation_p.G108E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	108	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TTTTCAAAGGGAATGCCAGGC	0.423									Alport_syndrome_with_Diffuse_Leiomyomatosis				17	78					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107844633	107844633	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107844633G>A	uc004enz.1	+	26	2161	c.1959G>A	c.(1957-1959)GGG>GGA	p.G653G	COL4A5_uc011mso.1_Silent_p.G653G|COL4A5_uc004eob.1_Silent_p.G261G	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	653	Triple-helical region.		G -> R (in APSX; juvenile type).		axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GTCCTAAAGGGGATCCAGGTC	0.403									Alport_syndrome_with_Diffuse_Leiomyomatosis				9	13					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107858195	107858195	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107858195G>A	uc004enz.1	+	30	2652	c.2450G>A	c.(2449-2451)GGA>GAA	p.G817E	COL4A5_uc011mso.1_Missense_Mutation_p.G817E|COL4A5_uc004eob.1_Missense_Mutation_p.G425E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	817	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGGCTGCCAGGAATAGGTGTT	0.438									Alport_syndrome_with_Diffuse_Leiomyomatosis				24	14					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107868959	107868959	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107868959C>T	uc004enz.1	+	35	3243	c.3041C>T	c.(3040-3042)CCT>CTT	p.P1014L	COL4A5_uc011mso.1_Missense_Mutation_p.P1014L|COL4A5_uc004eob.1_Missense_Mutation_p.P622L	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1014	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CCTGGTCTCCCTGGACAGCCA	0.433									Alport_syndrome_with_Diffuse_Leiomyomatosis				6	18					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107923951	107923951	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107923951C>T	uc004enz.1	+	44	4187	c.3985C>T	c.(3985-3987)CCT>TCT	p.P1329S	COL4A5_uc011mso.1_Missense_Mutation_p.P1326S|COL4A5_uc011msp.1_Missense_Mutation_p.P5S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1323	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GAAAGGAGATCCTGGTCTCCC	0.428									Alport_syndrome_with_Diffuse_Leiomyomatosis				23	13					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107938511	107938511	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107938511G>A	uc004enz.1	+	51	5038	c.4836G>A	c.(4834-4836)GGG>GGA	p.G1612G	COL4A5_uc011mso.1_Silent_p.G1609G|COL4A5_uc011msp.1_Silent_p.G288G	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1606	Collagen IV NC1.		Missing (in APSX).		axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CAAGTGCAGGGGCAGAAGGCT	0.493									Alport_syndrome_with_Diffuse_Leiomyomatosis				16	77					0	0	1	0	0
IRS4	8471	broad.mit.edu	37	X	107978025	107978025	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107978025G>A	uc004eoc.2	-	1	1583	c.1550C>T	c.(1549-1551)TCG>TTG	p.S517L		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	517						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						GTTTCCTCCCGAGCTATGGCT	0.597													40	61					0	0	1	0	0
IRS4	8471	broad.mit.edu	37	X	107979432	107979432	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107979432G>A	uc004eoc.2	-	1	176	c.143C>T	c.(142-144)TCG>TTG	p.S48L		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	48						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CGGACAAGACGACCCGGTCCC	0.657													15	18					0	0	1	0	0
KCNE1L	23630	broad.mit.edu	37	X	108867989	108867989	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:108867989G>A	uc004eoh.2	-	1	405	c.261C>T	c.(259-261)CTC>CTT	p.L87L		NM_012282	NP_036414	Q9UJ90	KCE1L_HUMAN	potassium voltage-gated channel, Isk-related	87	Cytoplasmic (Potential).				regulation of heart contraction	voltage-gated potassium channel complex					0						TGGCCTCGACGAGCTTACGGG	0.687													4	20					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109695723	109695723	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:109695723G>A	uc004eor.1	+	3	2124	c.1878G>A	c.(1876-1878)ACG>ACA	p.T626T	RGAG1_uc011msr.1_Silent_p.T626T	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	626										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CCTCAGGAACGATGTTCACGG	0.502													40	23					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109696929	109696929	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:109696929C>T	uc004eor.1	+	3	3330	c.3084C>T	c.(3082-3084)TCC>TCT	p.S1028S	RGAG1_uc011msr.1_Silent_p.S1028S	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	1028										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GAGCAAGGTCCACATCATTTA	0.498													61	47					0	0	1	0	0
TDGF3	6998	broad.mit.edu	37	X	109764975	109764975	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:109764975C>T	uc004eos.1	+	1		c.1436C>T				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						ATGCAAATTTCATGACCCGTA	0.343													15	22					0	0	1	0	0
CHRDL1	91851	broad.mit.edu	37	X	109924794	109924794	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:109924794C>T	uc004eou.3	-	10	1421	c.1072G>A	c.(1072-1074)GAG>AAG	p.E358K	CHRDL1_uc004eov.2_Missense_Mutation_p.E347K|CHRDL1_uc004eow.2_Missense_Mutation_p.E356K|CHRDL1_uc010nps.2_Missense_Mutation_p.E357K|CHRDL1_uc004eot.2_Missense_Mutation_p.E277K|CHRDL1_uc011mss.1_Missense_Mutation_p.E272K	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	350					BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						TCCCCATCCTCCATGAATACA	0.473													72	39					0	0	1	0	0
PAK3	5063	broad.mit.edu	37	X	110439146	110439146	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:110439146G>A	uc004epa.2	+	12	1259	c.1232G>A	c.(1231-1233)GGG>GAG	p.G411E	PAK3_uc010npt.1_Missense_Mutation_p.G396E|PAK3_uc010npu.1_Missense_Mutation_p.G396E|PAK3_uc004eoy.1_Missense_Mutation_p.G151E|PAK3_uc004eoz.2_Missense_Mutation_p.G396E|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.G432E|PAK3_uc010npw.1_Missense_Mutation_p.G417E	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	411	Protein kinase.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						ATTCTTCTCGGGATGGATGGC	0.358										TSP Lung(19;0.15)			70	49					0	0	1	0	0
CAPN6	827	broad.mit.edu	37	X	110494919	110494919	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:110494919C>T	uc004epc.1	-	6	919	c.751G>A	c.(751-753)GGC>AGC	p.G251S	CAPN6_uc011msu.1_5'UTR	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	251	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						TAGGTATGGCCCTTCAGCAGA	0.448													141	110					0	0	1	0	0
CAPN6	827	broad.mit.edu	37	X	110495667	110495667	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:110495667G>A	uc004epc.1	-	5	735	c.567C>T	c.(565-567)TTC>TTT	p.F189F	CAPN6_uc011msu.1_Intron	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	189	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						ATGTGCCCGTGAAGTCCACAA	0.423													32	26					0	0	1	0	0
ALG13	79868	broad.mit.edu	37	X	110988108	110988108	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:110988108C>T	uc011msy.1	+	24	2942	c.2908C>T	c.(2908-2910)CCA>TCA	p.P970S	ALG13_uc011msx.1_Intron|ALG13_uc011msz.1_Missense_Mutation_p.P892S|ALG13_uc011mta.1_Intron|ALG13_uc011mtb.1_Intron			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	970	Pro-rich.				dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						TTCCTGTGATCCAAGCGGCAG	0.274													6	8					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111078149	111078149	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:111078149G>A	uc004epl.1	-	7	2815	c.1896C>T	c.(1894-1896)GCC>GCT	p.A632A	TRPC5_uc004epm.1_Silent_p.A632A	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	632	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						AGCTACTCACGGCAATAAGCT	0.443													77	43					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111090583	111090583	+	Missense_Mutation	SNP	T	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:111090583T>G	uc004epl.1	-	6	2378	c.1459A>C	c.(1459-1461)ATT>CTT	p.I487L	TRPC5_uc004epm.1_Missense_Mutation_p.I487L	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	487	Helical; (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						GAACTTAAAATGTTGGATATT	0.463													20	28					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111090596	111090596	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:111090596G>A	uc004epl.1	-	6	2365	c.1446C>T	c.(1444-1446)TTC>TTT	p.F482F	TRPC5_uc004epm.1_Silent_p.F482F	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	482	Helical; (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TGGATATTGCGAAGAGTGCTT	0.483													18	24					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111097299	111097299	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:111097299G>A	uc004epl.1	-	4	1855	c.936C>T	c.(934-936)GCC>GCT	p.A312A	TRPC5_uc004epm.1_Silent_p.A312A	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	312	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						ACCACAGGGTGGCAAGCAACT	0.488													9	5					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111195317	111195317	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:111195317G>A	uc004epl.1	-	2	1251	c.332C>T	c.(331-333)GCT>GTT	p.A111V	TRPC5_uc004epm.1_Missense_Mutation_p.A111V	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	111	ANK 3.|Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						AAGCTCCACAGCGCCCACCAC	0.542													17	74					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111195390	111195390	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:111195390C>T	uc004epl.1	-	2	1178	c.259G>A	c.(259-261)GAG>AAG	p.E87K	TRPC5_uc004epm.1_Missense_Mutation_p.E87K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	87	ANK 2.|Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						AGCAGTAGCTCCATGATCTCC	0.537													72	28					0	0	1	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698666	111698666	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:111698666C>T	uc004epo.1	+	3	1151	c.710C>T	c.(709-711)TCC>TTC	p.S237F		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	237							nucleic acid binding|zinc ion binding			ovary(1)	1						TTGTTGGCTTCCTTGATCCAA	0.532													94	78					0	0	1	0	0
LHFPL1	340596	broad.mit.edu	37	X	111914257	111914257	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:111914257C>T	uc004epq.2	-	2	695	c.362G>A	c.(361-363)GGA>GAA	p.G121E	LHFPL1_uc004epp.2_Missense_Mutation_p.G144E|LHFPL1_uc010nqa.2_Intron|LHFPL1_uc010nqb.2_Missense_Mutation_p.G121E	NM_178175	NP_835469	Q86WI0	LHPL1_HUMAN	lipoma HMGIC fusion partner-like 1 precursor	121						integral to membrane					0						CTGCGCTGCTCCCATGCAACG	0.577													26	14					0	0	1	0	0
HTR2C	3358	broad.mit.edu	37	X	114141190	114141190	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:114141190G>A	uc004epu.1	+	6	1317	c.589G>A	c.(589-591)GAA>AAA	p.E197K	HTR2C_uc010nqc.1_Missense_Mutation_p.E197K|HTR2C_uc004epv.1_Missense_Mutation_p.R165Q	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	197	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	ACTGAGGGACGAAGAAAAGGT	0.443													23	90					0	0	1	0	0
HTR2C	3358	broad.mit.edu	37	X	114141204	114141204	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:114141204C>T	uc004epu.1	+	6	1331	c.603C>T	c.(601-603)TTC>TTT	p.F201F	HTR2C_uc010nqc.1_Silent_p.F201F|HTR2C_uc004epv.1_Missense_Mutation_p.R170C	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	201	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	AAAAGGTGTTCGTGAACAACA	0.448													70	53					0	0	1	0	0
LUZP4	51213	broad.mit.edu	37	X	114537894	114537894	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:114537894G>A	uc004eqa.2	+	3	287	c.253G>A	c.(253-255)GAA>AAA	p.E85K	LUZP4_uc004eqb.2_Intron	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	85						nucleus				ovary(2)	2						CAACTCTGAGGAAGGAAATCA	0.343													64	31					0	0	1	0	0
LUZP4	51213	broad.mit.edu	37	X	114541218	114541218	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:114541218G>A	uc004eqa.2	+	4	825	c.791G>A	c.(790-792)AGA>AAA	p.R264K	LUZP4_uc004eqb.2_Missense_Mutation_p.R182K	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	264						nucleus				ovary(2)	2						GCCACTCAGAGAGATCTCATA	0.478													43	35					0	0	1	0	0
SLC6A14	11254	broad.mit.edu	37	X	115573981	115573981	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:115573981C>T	uc004eqi.2	+	4	577	c.473C>T	c.(472-474)TCG>TTG	p.S158L	SLC6A14_uc011mtm.1_RNA	NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	158	Extracellular (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	AATTGTTCTTCGTGGTCAGAT	0.303													64	34					0	0	1	0	0
SLC6A14	11254	broad.mit.edu	37	X	115574931	115574931	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:115574931G>A	uc004eqi.2	+	5	733	c.629G>A	c.(628-630)GGG>GAG	p.G210E	SLC6A14_uc011mtm.1_RNA	NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	210	Extracellular (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	TATCAGCCAGGGCAGCTTCCC	0.328													31	30					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117043327	117043328	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:117043327_117043328GG>AA	uc004eql.2	-	5	1364_1365	c.1302_1303CC>TT	c.(1300-1305)TTCCAC>TTTTAC	p.H435Y	KLHL13_uc004eqk.2_Missense_Mutation_p.H384Y|KLHL13_uc011mtn.1_Missense_Mutation_p.H275Y|KLHL13_uc011mto.1_Missense_Mutation_p.H429Y|KLHL13_uc011mtp.1_Missense_Mutation_p.H437Y|KLHL13_uc004eqm.2_Missense_Mutation_p.H384Y|KLHL13_uc011mtq.1_Missense_Mutation_p.H419Y	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	435	Kelch 2.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GCACTTAGGTGGAAGAAGGTGC	0.396													18	16					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117043518	117043518	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:117043518G>A	uc004eql.2	-	5	1174	c.1112C>T	c.(1111-1113)TCG>TTG	p.S371L	KLHL13_uc004eqk.2_Missense_Mutation_p.S320L|KLHL13_uc011mtn.1_Missense_Mutation_p.S211L|KLHL13_uc011mto.1_Missense_Mutation_p.S365L|KLHL13_uc011mtp.1_Missense_Mutation_p.S373L|KLHL13_uc004eqm.2_Missense_Mutation_p.S320L|KLHL13_uc011mtq.1_Missense_Mutation_p.S355L	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	371	Kelch 1.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GGGGGCTAACGATTTCCACTC	0.488													41	30					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117053514	117053514	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:117053514C>T	uc004eql.2	-	4	602	c.540G>A	c.(538-540)TTG>TTA	p.L180L	KLHL13_uc004eqk.2_Silent_p.L129L|KLHL13_uc011mtn.1_Silent_p.L20L|KLHL13_uc011mto.1_Silent_p.L174L|KLHL13_uc011mtp.1_Silent_p.L182L|KLHL13_uc004eqm.2_Silent_p.L129L|KLHL13_uc011mtq.1_Silent_p.L164L	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	180					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TACAGAAGTCCAAAACTGGCA	0.373													56	35					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117079486	117079486	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:117079486C>T	uc004eql.2	-	2	213	c.151G>A	c.(151-153)GAA>AAA	p.E51K	KLHL13_uc004eqk.2_5'UTR|KLHL13_uc011mtn.1_5'UTR|KLHL13_uc011mto.1_Missense_Mutation_p.E45K|KLHL13_uc011mtp.1_Missense_Mutation_p.E53K|KLHL13_uc004eqm.2_5'UTR|KLHL13_uc011mtq.1_Missense_Mutation_p.E35K	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	51					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						AGGCCCATTTCGCTGCCTCCA	0.433													14	23					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117106777	117106777	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:117106777C>T	uc004eql.2	-	1	77	c.15G>A	c.(13-15)TGG>TGA	p.W5*	KLHL13_uc011mtn.1_5'UTR|KLHL13_uc011mto.1_Intron|KLHL13_uc011mtp.1_Intron|KLHL13_uc004eqm.2_Intron|KLHL13_uc011mtq.1_Intron	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	5					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						AGCTCGTTTTCCATTTCAATG	0.418													27	18					0	0	1	0	0
WDR44	54521	broad.mit.edu	37	X	117566802	117566802	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:117566802C>T	uc004eqn.2	+	13	2221	c.1796C>T	c.(1795-1797)CCA>CTA	p.P599L	WDR44_uc004eqo.2_Missense_Mutation_p.P599L|WDR44_uc011mtr.1_Missense_Mutation_p.P574L|WDR44_uc010nqi.2_Missense_Mutation_p.P309L	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	599						cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						CGGCAACGGCCATTTTGCAAA	0.338													61	58					0	0	1	0	0
DOCK11	139818	broad.mit.edu	37	X	117788609	117788609	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:117788609C>T	uc004eqp.2	+	43	4803	c.4740C>T	c.(4738-4740)ATC>ATT	p.I1580I	DOCK11_uc004eqq.2_Silent_p.I1359I	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1580	DHR-2.				blood coagulation	cytosol	GTP binding			ovary(3)	3						CCAAGAGAATCCGCACTGTTC	0.418													40	19					0	0	1	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117960368	117960368	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:117960368G>A	uc004equ.2	+	4	1634	c.1161G>A	c.(1159-1161)AGG>AGA	p.R387R		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	387					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						AGATGGAGAGGTCAAGAGTGG	0.498													23	39					0	0	1	0	0
LONRF3	79836	broad.mit.edu	37	X	118145875	118145875	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:118145875C>T	uc004eqw.2	+	8	1781	c.1750C>T	c.(1750-1752)CGT>TGT	p.R584C	LONRF3_uc004eqx.2_Missense_Mutation_p.R543C|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Missense_Mutation_p.R328C	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	584	Lon.				proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						CCTGATGATTCGTAGATGCAT	0.493													51	37					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221228	118221228	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:118221228C>T	uc004era.3	-	11	3965	c.3965G>A	c.(3964-3966)AGG>AAG	p.R1322K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1322										ovary(4)|skin(1)	5						TTTAGAATTCCTCCACTCTTT	0.488													49	157					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118228010	118228010	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:118228010C>T	uc004era.3	-	9	1316	c.1316G>A	c.(1315-1317)GGA>GAA	p.G439E		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	439										ovary(4)|skin(1)	5						CTGCAGGGATCCCTCTAAAAT	0.473													24	20					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118230475	118230475	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:118230475C>T	uc004era.3	-	8	1248	c.1248G>A	c.(1246-1248)AAG>AAA	p.K416K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	416										ovary(4)|skin(1)	5						GAAGGTTCTTCTTTTGTTTGC	0.463													13	11					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118230488	118230488	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:118230488G>A	uc004era.3	-	8	1235	c.1235C>T	c.(1234-1236)CCC>CTC	p.P412L		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	412										ovary(4)|skin(1)	5						TTGTTTGCGGGGATTTAAAGT	0.468													13	14					0	0	1	0	0
RHOXF1	158800	broad.mit.edu	37	X	119249615	119249615	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:119249615C>T	uc004esk.1	-	1	233	c.158G>A	c.(157-159)GGT>GAT	p.G53D	uc004esi.1_Intron	NM_139282	NP_644811	Q8NHV9	RHXF1_HUMAN	Rhox homeobox family, member 1	53					gamete generation|multicellular organismal development|steroid hormone receptor signaling pathway	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTGGTTCACACCGCCCTCAGG	0.642													42	30					0	0	1	0	0
RHOXF1	158800	broad.mit.edu	37	X	119249751	119249751	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:119249751C>T	uc004esk.1	-	1	97	c.22G>A	c.(22-24)GAC>AAC	p.D8N	uc004esi.1_Intron	NM_139282	NP_644811	Q8NHV9	RHXF1_HUMAN	Rhox homeobox family, member 1	8					gamete generation|multicellular organismal development|steroid hormone receptor signaling pathway	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AACACGGTGTCGTGGACGAGC	0.607													8	35					0	0	1	0	0
RHOXF2B	727940	broad.mit.edu	37	X	119293315	119293315	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:119293315C>T	uc004esl.3	+	2	664	c.474C>T	c.(472-474)TTC>TTT	p.F158F		NM_001099685	NP_001093155	P0C7M4	RHF2B_HUMAN	Rhox homeobox family, member 2B	158	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCGAGCAGTTCCCCAGTGAGT	0.652													9	5					0	0	1	0	0
ZBTB33	10009	broad.mit.edu	37	X	119388433	119388433	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:119388433C>T	uc004esn.1	+	2	1391	c.1163C>T	c.(1162-1164)TCC>TTC	p.S388F	ZBTB33_uc010nqm.1_Missense_Mutation_p.S388F	NM_006777	NP_006768	Q86T24	KAISO_HUMAN	kaiso	388					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleolus|plasma membrane	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CTTTCCAATTCCTTAAAAATT	0.363													47	42					0	0	1	0	0
FAM70A	55026	broad.mit.edu	37	X	119419520	119419520	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:119419520G>A	uc004eso.3	-	6	682	c.455C>T	c.(454-456)TCC>TTC	p.S152F	FAM70A_uc004esp.3_Intron|FAM70A_uc010nqo.2_Intron	NM_017938	NP_060408	Q5JRV8	FA70A_HUMAN	hypothetical protein LOC55026 isoform 1	152						integral to membrane				lung(1)|breast(1)	2						AACCCTCGTGGAAGGAGAATT	0.403													22	27					0	0	1	0	0
ATP1B4	23439	broad.mit.edu	37	X	119500593	119500593	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:119500593C>T	uc004esr.2	+	2	361	c.277C>T	c.(277-279)CTG>TTG	p.L93L	ATP1B4_uc004esq.2_Silent_p.L93L|ATP1B4_uc011mtx.1_Intron|ATP1B4_uc011mty.1_Silent_p.L93L	NM_001142447	NP_001135919	Q9UN42	AT1B4_HUMAN	ATPase, (Na+)/K+ transporting, beta 4	93	Nuclear (Potential).				ATP biosynthetic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to plasma membrane|nuclear inner membrane	sodium:potassium-exchanging ATPase activity			ovary(1)|skin(1)	2						GAGTGAATACCTGTGGGATCC	0.398													20	13					0	0	1	0	0
CT47B1	643311	broad.mit.edu	37	X	120007815	120007815	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:120007815C>T	uc011muc.1	-	2	1090	c.835G>A	c.(835-837)GAA>AAA	p.E279K		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	279	Potential.										0						TCTTTCTCTTCCTCGCCTGCA	0.458													210	149					0	0	1	0	0
CT47B1	643311	broad.mit.edu	37	X	120009333	120009333	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:120009333C>T	uc011muc.1	-	1	447	c.192G>A	c.(190-192)GAG>GAA	p.E64E		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	64											0						GCTCACCCTCCTCCTCCCCGA	0.667													30	41					0	0	1	0	0
CT47A6	728062	broad.mit.edu	37	X	120094383	120094383	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:120094383C>T	uc004eth.2	-	1	955	c.700G>A	c.(700-702)GCC>ACC	p.A234T	CT47A1_uc004eti.2_Intron	NM_001080141	NP_001073610	Q5JQC4	CT47A_HUMAN	cancer/testis antigen family 47, member A6	234											0						TCTTCTGTGGCTGGTTCCTCT	0.687													256	2					0	0	1	0	0
CT47A6	728062	broad.mit.edu	37	X	120094389	120094389	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:120094389C>T	uc004eth.2	-	1	949	c.694G>A	c.(694-696)GAA>AAA	p.E232K	CT47A1_uc004eti.2_Intron	NM_001080141	NP_001073610	Q5JQC4	CT47A_HUMAN	cancer/testis antigen family 47, member A6	232											0						GTGGCTGGTTCCTCTGCGTCT	0.682													249	2					0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122387215	122387215	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:122387215G>A	uc004etq.3	+	4	623	c.330G>A	c.(328-330)ATG>ATA	p.M110I	GRIA3_uc004etr.3_Missense_Mutation_p.M110I|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.M94I	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	110	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	AGATGTCAATGAACACCCTGA	0.498													73	50					0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122532572	122532572	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:122532572G>A	uc004etq.3	+	8	1291	c.998G>A	c.(997-999)CGG>CAG	p.R333Q	GRIA3_uc004etr.3_Missense_Mutation_p.R333Q|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.R317Q	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	333	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	GATGTGTCCCGGAGAGGAAGT	0.483													19	11					0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122536928	122536928	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:122536928G>A	uc004etq.3	+	9	1457	c.1164G>A	c.(1162-1164)ATG>ATA	p.M388I	GRIA3_uc004etr.3_Missense_Mutation_p.M388I|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.M372I	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	388	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TGTATGAAATGAAAGTCAGTG	0.348													60	57					0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122551357	122551357	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:122551357G>A	uc004etq.3	+	12	1898	c.1605G>A	c.(1603-1605)AAG>AAA	p.K535K	GRIA3_uc004etr.3_Silent_p.K535K|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Silent_p.K519K	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	535	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TCATGATAAAGAAGCCTCAGA	0.428													87	63					0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122551490	122551490	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:122551490G>A	uc004etq.3	+	12	2031	c.1738G>A	c.(1738-1740)GAA>AAA	p.E580K	GRIA3_uc004etr.3_Missense_Mutation_p.E580K|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.E564K	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	580	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	CAGTCCTTATGAATGGCACTT	0.418													41	149					0	0	1	0	0
THOC2	57187	broad.mit.edu	37	X	122759828	122759828	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:122759828G>A	uc004etu.2	-	25	3024	c.2992C>T	c.(2992-2994)CGT>TGT	p.R998C	THOC2_uc004etw.1_5'Flank	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	998					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TCAACAAAACGAGCACAGTAA	0.323													30	33					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123515039	123515039	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:123515039C>T	uc004euj.2	-	31	7589	c.7525G>A	c.(7525-7527)GGA>AGA	p.G2509R	ODZ1_uc011muj.1_Missense_Mutation_p.G2515R|ODZ1_uc010nqy.2_Missense_Mutation_p.G2516R	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2509	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TGCTTCCCTCCTTCAAGGCAC	0.453													74	50					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123519851	123519851	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:123519851G>A	uc004euj.2	-	28	5795	c.5731C>T	c.(5731-5733)CTG>TTG	p.L1911L	ODZ1_uc011muj.1_Silent_p.L1917L|ODZ1_uc010nqy.2_Silent_p.L1918L	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1911	Extracellular (Potential).|YD 9.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ACTGAGAGCAGACAATCTGGT	0.498													24	18					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123540242	123540242	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:123540242C>T	uc004euj.2	-	25	5123	c.5059G>A	c.(5059-5061)GAT>AAT	p.D1687N	ODZ1_uc011muj.1_Missense_Mutation_p.D1693N|ODZ1_uc010nqy.2_Missense_Mutation_p.D1694N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1687	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TTGGAAGTATCTAGCTCCACT	0.458													40	81					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123556375	123556375	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:123556375G>A	uc004euj.2	-	23	4261	c.4197C>T	c.(4195-4197)ATC>ATT	p.I1399I	ODZ1_uc011muj.1_Silent_p.I1405I|ODZ1_uc010nqy.2_Silent_p.I1406I	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1399	NHL 3.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GGCGTCCTGCGATGATCCGAA	0.498													40	40					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123615708	123615708	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:123615708C>T	uc004euj.2	-	21	3866	c.3802G>A	c.(3802-3804)GAG>AAG	p.E1268K	ODZ1_uc011muj.1_Missense_Mutation_p.E1274K|ODZ1_uc010nqy.2_Missense_Mutation_p.E1275K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1268	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TCTTTCGTCTCCACAAGAGAT	0.458													20	72					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123695634	123695634	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:123695634C>T	uc004euj.2	-	14	2385	c.2321G>A	c.(2320-2322)CGA>CAA	p.R774Q	ODZ1_uc011muj.1_Missense_Mutation_p.R773Q|ODZ1_uc010nqy.2_Missense_Mutation_p.R774Q	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	774	EGF-like 8.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CAGGGTACATCGTCCATTTCC	0.473													40	28					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123779149	123779149	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:123779149C>T	uc004euj.2	-	10	1784	c.1720G>A	c.(1720-1722)GAG>AAG	p.E574K	ODZ1_uc011muj.1_Missense_Mutation_p.E573K|ODZ1_uc010nqy.2_Missense_Mutation_p.E574K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	574	EGF-like 2.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TGTCCTTTCTCGTATTCTCCA	0.498													122	83					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	124097411	124097411	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:124097411C>T	uc004euj.2	-	1	256	c.192G>A	c.(190-192)AGG>AGA	p.R64R	ODZ1_uc011muj.1_Silent_p.R64R|ODZ1_uc010nqy.2_Silent_p.R64R	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	64	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTACTTCTTTCCTCTTTCTAC	0.358													23	119					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	124097438	124097438	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:124097438C>T	uc004euj.2	-	1	229	c.165G>A	c.(163-165)ATG>ATA	p.M55I	ODZ1_uc011muj.1_Missense_Mutation_p.M55I|ODZ1_uc010nqy.2_Missense_Mutation_p.M55I	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	55	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TATTGTAATTCATCCTCAGCT	0.373													106	82					0	0	1	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685672	125685672	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:125685672C>T	uc004eul.2	-	1	1171	c.920G>A	c.(919-921)CGG>CAG	p.R307Q		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	307										skin(3)|ovary(1)	4						CACATTATCCCGGAAGTAGGG	0.582													34	26					0	0	1	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185851	127185851	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:127185851G>A	uc004eum.2	-	1	532	c.335C>T	c.(334-336)TCT>TTT	p.S112F		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	112						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						AGGATTCAAAGAGGGCTCGGT	0.483													133	98					0	0	1	0	0
ACTRT1	139741	broad.mit.edu	37	X	127186106	127186106	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:127186106C>T	uc004eum.2	-	1	277	c.80G>A	c.(79-81)GGA>GAA	p.G27E		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	27						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						TCCAATCTCTCCAGACAGGCC	0.443													9	42					0	0	1	0	0
XPNPEP2	7512	broad.mit.edu	37	X	128896701	128896701	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:128896701G>A	uc004eut.1	+	19	1939	c.1695G>A	c.(1693-1695)GGG>GGA	p.G565G		NM_003399	NP_003390	O43895	XPP2_HUMAN	X-prolyl aminopeptidase 2, membrane-bound	565					cellular process|proteolysis	anchored to membrane|plasma membrane	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0						GAGAATTTGGGATCCGTCTCG	0.542													36	24					0	0	1	0	0
BCORL1	63035	broad.mit.edu	37	X	129148439	129148439	+	Missense_Mutation	SNP	C	T	T	rs144104600		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:129148439C>T	uc004evb.1	+	4	1805	c.1691C>T	c.(1690-1692)CCA>CTA	p.P564L	BCORL1_uc010nrd.1_Missense_Mutation_p.P466L	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	564	Pro-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						CTTCCAACTCCACAGCCTCTG	0.637													31	60					0	0	1	0	0
BCORL1	63035	broad.mit.edu	37	X	129149928	129149928	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:129149928C>T	uc004evb.1	+	4	3294	c.3180C>T	c.(3178-3180)TTC>TTT	p.F1060F	BCORL1_uc010nrd.1_Silent_p.F962F	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1060					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						ATGTGGTCTTCAATTTAGCCA	0.617													22	14					0	0	1	0	0
ELF4	2000	broad.mit.edu	37	X	129205174	129205174	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:129205174G>A	uc004evd.3	-	7	1035	c.650C>T	c.(649-651)GCT>GTT	p.A217V	ELF4_uc004eve.3_Missense_Mutation_p.A217V	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4	217	ETS.				natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTGCAGAAGAGCCAGGAGGAA	0.597			T	ERG	AML								45	27					0	0	1	0	0
RBMX2	51634	broad.mit.edu	37	X	129546525	129546525	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:129546525C>T	uc004evt.2	+	6	736	c.672C>T	c.(670-672)CTC>CTT	p.L224L		NM_016024	NP_057108	Q9Y388	RBMX2_HUMAN	RNA binding motif protein, X-linked 2	224	Lys-rich.						nucleotide binding|RNA binding			breast(3)|ovary(1)	4						GGCAGAAGCTCCCCAAATCCA	0.557													37	14					0	0	1	0	0
FAM45B	55855	broad.mit.edu	37	X	129629752	129629752	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:129629752G>A	uc010nrh.2	+	1	838	c.620G>A	c.(619-621)CGA>CAA	p.R207Q	uc004evu.2_Intron	NM_207009	NP_996892			hypothetical protein LOC404636											skin(1)	1				all cancers(201;0.0293)		GTGTGGCACCGACAGGACTGG	0.537													18	36					0	0	1	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130218274	130218274	+	Missense_Mutation	SNP	C	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130218274C>A	uc004evz.2	+	5	986	c.641C>A	c.(640-642)CCA>CAA	p.P214Q	ARHGAP36_uc004ewa.2_Missense_Mutation_p.P202Q|ARHGAP36_uc004ewb.2_Missense_Mutation_p.P183Q|ARHGAP36_uc004ewc.2_Missense_Mutation_p.P78Q	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	214					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						ATTTCCTTTCCAATTGGCCAA	0.498													4	38					0.00909568	0.00909834	1	1	0
ARHGAP36	158763	broad.mit.edu	37	X	130218305	130218305	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130218305G>A	uc004evz.2	+	5	1017	c.672G>A	c.(670-672)AGG>AGA	p.R224R	ARHGAP36_uc004ewa.2_Silent_p.R212R|ARHGAP36_uc004ewb.2_Silent_p.R193R|ARHGAP36_uc004ewc.2_Silent_p.R88R	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	224					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						GATCCAAAAGGAAGATGAGTC	0.478													26	12					0	0	1	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130218616	130218616	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130218616G>A	uc004evz.2	+	6	1110	c.765G>A	c.(763-765)GGG>GGA	p.G255G	ARHGAP36_uc004ewa.2_Silent_p.G243G|ARHGAP36_uc004ewb.2_Silent_p.G224G|ARHGAP36_uc004ewc.2_Silent_p.G119G	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	255	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						GCGCAGTGGGGATTTTTACCC	0.488													47	43					0	0	1	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130220636	130220636	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130220636G>A	uc004evz.2	+	11	1828	c.1483G>A	c.(1483-1485)GAA>AAA	p.E495K	ARHGAP36_uc004ewa.2_Missense_Mutation_p.E483K|ARHGAP36_uc004ewb.2_Missense_Mutation_p.E464K|ARHGAP36_uc004ewc.2_Missense_Mutation_p.E359K	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	495					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						GCCTTCTGATGAAGGTCAGTT	0.537													20	19					0	0	1	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130222677	130222677	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130222677C>T	uc004evz.2	+	12	1907	c.1562C>T	c.(1561-1563)CCC>CTC	p.P521L	ARHGAP36_uc004ewa.2_Missense_Mutation_p.P509L|ARHGAP36_uc004ewb.2_Missense_Mutation_p.P490L|ARHGAP36_uc004ewc.2_Missense_Mutation_p.P385L	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	521					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						GGTAACCCTCCCATTCCGGAG	0.512													20	12					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130407850	130407850	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130407850C>T	uc004ewd.2	-	20	4169	c.3931G>A	c.(3931-3933)GAA>AAA	p.E1311K	IGSF1_uc004ewe.3_Missense_Mutation_p.E1305K|IGSF1_uc004ewf.2_Missense_Mutation_p.E1291K	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1311	Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GGTTCTCCTTCTTGGTTACAC	0.463													89	48					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130408766	130408766	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130408766G>A	uc004ewd.2	-	18	3796	c.3558C>T	c.(3556-3558)CCC>CCT	p.P1186P	IGSF1_uc004ewe.3_Silent_p.P1180P|IGSF1_uc004ewf.2_Silent_p.P1166P	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1186	Extracellular (Potential).|Ig-like C2-type 12.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CACCTGGCAGGGGTCCTCGGC	0.502													88	57					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130409573	130409573	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130409573C>T	uc004ewd.2	-	16	3301	c.3063G>A	c.(3061-3063)GGG>GGA	p.G1021G	IGSF1_uc004ewe.3_Silent_p.G1015G|IGSF1_uc004ewf.2_Silent_p.G1001G	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1021	Extracellular (Potential).|Ig-like C2-type 10.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGGGGAATGCCCCGTCATTAC	0.522													10	42					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130409647	130409647	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130409647C>T	uc004ewd.2	-	16	3227	c.2989G>A	c.(2989-2991)GGA>AGA	p.G997R	IGSF1_uc004ewe.3_Missense_Mutation_p.G991R|IGSF1_uc004ewf.2_Missense_Mutation_p.G977R	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	997	Extracellular (Potential).|Ig-like C2-type 10.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TATCCTACTCCATGGACCGGC	0.517													52	31					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130419274	130419274	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130419274G>A	uc004ewd.2	-	5	784	c.546C>T	c.(544-546)GCC>GCT	p.A182A	IGSF1_uc004ewe.3_Silent_p.A171A|IGSF1_uc004ewf.2_Silent_p.A162A|IGSF1_uc004ewg.2_Silent_p.A182A	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	182	Ig-like C2-type 2.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGGAGAATATGGCCATTGTCC	0.517													50	52					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130419851	130419851	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130419851G>A	uc004ewd.2	-	4	507	c.269C>T	c.(268-270)TCA>TTA	p.S90L	IGSF1_uc004ewe.3_Missense_Mutation_p.S79L|IGSF1_uc004ewf.2_Missense_Mutation_p.S70L|IGSF1_uc004ewg.2_Missense_Mutation_p.S90L	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	90	Ig-like C2-type 1.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TATAAGGAATGAAACTTGGAA	0.512													55	52					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130419919	130419919	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:130419919C>T	uc004ewd.2	-	4	439	c.201G>A	c.(199-201)AAG>AAA	p.K67K	IGSF1_uc004ewe.3_Silent_p.K56K|IGSF1_uc004ewf.2_Silent_p.K47K|IGSF1_uc004ewg.2_Silent_p.K67K	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	67	Ig-like C2-type 1.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GCAGCAGGAACTTGCTTGATA	0.527													48	55					0	0	1	0	0
MST4	51765	broad.mit.edu	37	X	131202542	131202542	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:131202542G>A	uc004ewk.1	+	6	843	c.542G>A	c.(541-543)GGA>GAA	p.G181E	MST4_uc004ewl.1_Missense_Mutation_p.G104E|MST4_uc011mux.1_Missense_Mutation_p.G203E|MST4_uc010nrj.1_Missense_Mutation_p.G181E|MST4_uc004ewm.1_Missense_Mutation_p.G181E	NM_016542	NP_057626	Q9P289	MST4_HUMAN	serine/threonine protein kinase MST4 isoform 1	181	Protein kinase.				cellular component disassembly involved in apoptosis|regulation of apoptosis	cytosol|Golgi membrane	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(3)|stomach(2)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(192;0.000127)					ACCTTTGTGGGAACTCCATTT	0.378													31	53					0	0	1	0	0
MST4	51765	broad.mit.edu	37	X	131206347	131206347	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:131206347C>T	uc004ewk.1	+	9	1285	c.984C>T	c.(982-984)ACC>ACT	p.T328T	MST4_uc004ewl.1_Silent_p.T251T|MST4_uc011mux.1_Silent_p.T350T|MST4_uc010nrj.1_Silent_p.T328T|MST4_uc004ewm.1_Silent_p.T266T	NM_016542	NP_057626	Q9P289	MST4_HUMAN	serine/threonine protein kinase MST4 isoform 1	328					cellular component disassembly involved in apoptosis|regulation of apoptosis	cytosol|Golgi membrane	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(3)|stomach(2)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(192;0.000127)					GCTTTACCACCGTACGAAAGA	0.403													11	24					0	0	1	0	0
FRMD7	90167	broad.mit.edu	37	X	131231365	131231365	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:131231365C>T	uc004ewn.2	-	4	391	c.213G>A	c.(211-213)AAG>AAA	p.K71K	FRMD7_uc011muy.1_Intron	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	71	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AAACAATCTCCTTAGGATCTT	0.299													18	106					0	0	1	0	0
FRMD7	90167	broad.mit.edu	37	X	131234714	131234714	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:131234714G>A	uc004ewn.2	-	2	266	c.88C>T	c.(88-90)CTG>TTG	p.L30L	FRMD7_uc011muy.1_Silent_p.L30L	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	30	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CTGCAACTCAGGTTAAACAAT	0.373													46	29					0	0	1	0	0
USP26	83844	broad.mit.edu	37	X	132160463	132160463	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:132160463C>T	uc010nrm.1	-	6	2256	c.1786G>A	c.(1786-1788)GAT>AAT	p.D596N	USP26_uc011mvf.1_Missense_Mutation_p.D596N	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	596					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					GCCAGGATATCTTTGGATTCC	0.398													31	24					0	0	1	0	0
USP26	83844	broad.mit.edu	37	X	132160519	132160519	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:132160519C>T	uc010nrm.1	-	6	2200	c.1730G>A	c.(1729-1731)CGA>CAA	p.R577Q	USP26_uc011mvf.1_Missense_Mutation_p.R577Q	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	577					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					AGTCATCTTTCGAATAACTTT	0.398													38	22					0	0	1	0	0
GPC3	2719	broad.mit.edu	37	X	132826487	132826487	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:132826487A>G	uc004exe.1	-	5	1392	c.1202T>C	c.(1201-1203)TTC>TCC	p.F401S	GPC3_uc004exd.1_Missense_Mutation_p.F273S|GPC3_uc010nrn.1_Missense_Mutation_p.F424S|GPC3_uc011mvh.1_Missense_Mutation_p.F385S|GPC3_uc010nro.1_Missense_Mutation_p.F347S|GPC3_uc010nrp.1_Missense_Mutation_p.F273S	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	401						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					AGCACTATAGAAGCTGATGAA	0.413			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				41	31					0	0	1	0	0
GPC3	2719	broad.mit.edu	37	X	132888043	132888043	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:132888043C>T	uc004exe.1	-	3	688	c.498G>A	c.(496-498)ATG>ATA	p.M166I	GPC3_uc004exd.1_Missense_Mutation_p.M38I|GPC3_uc010nrn.1_Missense_Mutation_p.M166I|GPC3_uc011mvh.1_Missense_Mutation_p.M150I|GPC3_uc010nro.1_Missense_Mutation_p.M112I|GPC3_uc010nrp.1_Missense_Mutation_p.M38I	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	166						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					ATTCATTGACCATGTCATCTA	0.458			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				84	56					0	0	1	0	0
GPC3	2719	broad.mit.edu	37	X	133119350	133119350	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:133119350G>A	uc004exe.1	-	1	317	c.127C>T	c.(127-129)CAG>TAG	p.Q43*	GPC3_uc010nrn.1_Nonsense_Mutation_p.Q43*|GPC3_uc011mvh.1_Nonsense_Mutation_p.Q43*|GPC3_uc010nro.1_Nonsense_Mutation_p.Q43*|GPC3_uc010nrp.1_5'UTR	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	43						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					TGCAGTCTCTGGAAGAAGGAG	0.692			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				7	6					0	0	1	0	0
MIR363	574031	broad.mit.edu	37	X	133303440	133303440	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:133303440C>T	hsa-mir-363|MI0000764	-			c.43C>T																				0						AATTTTTCTCCTATGATACTC	0.388													23	31					0	0	1	0	0
CT45A5	441521	broad.mit.edu	37	X	134947909	134947909	+	Missense_Mutation	SNP	C	T	T	rs143395460	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:134947909C>T	uc004eze.2	-	3	661	c.416G>A	c.(415-417)CGA>CAA	p.R139Q	CT45A5_uc011mvu.1_Missense_Mutation_p.R139Q	NM_001007551	NP_001007552	Q6NSH3	CT455_HUMAN	cancer/testis antigen family 45, member A5	139											0						CTACTTACTTCGTCCAAGGCA	0.388													39	26					0	0	1	0	0
SAGE1	55511	broad.mit.edu	37	X	134990687	134990687	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:134990687G>A	uc004ezh.2	+	12	1519	c.1352G>A	c.(1351-1353)CGA>CAA	p.R451Q	SAGE1_uc010nry.1_Missense_Mutation_p.R420Q|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	451										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AATGGCCAACGAAAACAGGAT	0.428													77	70					0	0	1	0	0
SAGE1	55511	broad.mit.edu	37	X	134991144	134991144	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:134991144C>T	uc004ezh.2	+	13	1730	c.1563C>T	c.(1561-1563)TCC>TCT	p.S521S	SAGE1_uc010nry.1_Silent_p.S490S|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	521										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTATTCCATCCATGAGTACCA	0.403													39	23					0	0	1	0	0
SAGE1	55511	broad.mit.edu	37	X	134992588	134992588	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:134992588C>T	uc004ezh.2	+	16	2046	c.1879C>T	c.(1879-1881)CAC>TAC	p.H627Y	SAGE1_uc010nry.1_Missense_Mutation_p.H596Y|SAGE1_uc011mvv.1_Missense_Mutation_p.H251Y	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	627										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGCAGTCACTCACAACATCCG	0.483													27	51					0	0	1	0	0
SAGE1	55511	broad.mit.edu	37	X	134993876	134993876	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:134993876C>T	uc004ezh.2	+	18	2452	c.2285C>T	c.(2284-2286)TCT>TTT	p.S762F	SAGE1_uc010nry.1_Missense_Mutation_p.S731F|SAGE1_uc011mvv.1_Missense_Mutation_p.S386F	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	762										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GCATTGGATTCTTTCTCTCAC	0.423													61	96					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135427031	135427031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135427031C>T	uc004ezu.1	+	6	1457	c.1166C>T	c.(1165-1167)TCA>TTA	p.S389L	GPR112_uc010nsb.1_Missense_Mutation_p.S184L|GPR112_uc010nsc.1_Missense_Mutation_p.S156L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	389	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCTACAACTTCAGCAATTAAA	0.368													48	29					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135427318	135427318	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135427318C>T	uc004ezu.1	+	6	1744	c.1453C>T	c.(1453-1455)CCT>TCT	p.P485S	GPR112_uc010nsb.1_Missense_Mutation_p.P280S|GPR112_uc010nsc.1_Missense_Mutation_p.P252S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	485	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TTCTGTATTTCCTAGAAACCA	0.448													28	40					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135427572	135427572	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135427572G>A	uc004ezu.1	+	6	1998	c.1707G>A	c.(1705-1707)GAG>GAA	p.E569E	GPR112_uc010nsb.1_Silent_p.E364E|GPR112_uc010nsc.1_Silent_p.E336E	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	569	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTGGGACTGAGAGTGTACAGA	0.428													29	36					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135428793	135428793	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135428793C>T	uc004ezu.1	+	6	3219	c.2928C>T	c.(2926-2928)ACC>ACT	p.T976T	GPR112_uc010nsb.1_Silent_p.T771T|GPR112_uc010nsc.1_Silent_p.T743T	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	976	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TATCAGAAACCAGTTTCTCCA	0.512													16	112					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135428894	135428894	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135428894C>T	uc004ezu.1	+	6	3320	c.3029C>T	c.(3028-3030)CCT>CTT	p.P1010L	GPR112_uc010nsb.1_Missense_Mutation_p.P805L|GPR112_uc010nsc.1_Missense_Mutation_p.P777L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1010	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ACCCCTGTGCCTGTTACTCAT	0.507													76	52					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135429948	135429948	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135429948G>A	uc004ezu.1	+	6	4374	c.4083G>A	c.(4081-4083)GGG>GGA	p.G1361G	GPR112_uc010nsb.1_Silent_p.G1156G|GPR112_uc010nsc.1_Silent_p.G1128G	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1361	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CCAGTCTTGGGAAAACAGCTC	0.478													22	110					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135430251	135430251	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135430251C>T	uc004ezu.1	+	6	4677	c.4386C>T	c.(4384-4386)TTC>TTT	p.F1462F	GPR112_uc010nsb.1_Silent_p.F1257F|GPR112_uc010nsc.1_Silent_p.F1229F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1462	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CACAGACTTTCCCTGAGTCCT	0.423													69	45					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135430764	135430764	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135430764G>A	uc004ezu.1	+	6	5190	c.4899G>A	c.(4897-4899)ATG>ATA	p.M1633I	GPR112_uc010nsb.1_Missense_Mutation_p.M1428I|GPR112_uc010nsc.1_Missense_Mutation_p.M1400I	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1633	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTACAGAAATGATAGAGGCAC	0.448													66	53					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135431120	135431120	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135431120C>T	uc004ezu.1	+	6	5546	c.5255C>T	c.(5254-5256)TCA>TTA	p.S1752L	GPR112_uc010nsb.1_Missense_Mutation_p.S1547L|GPR112_uc010nsc.1_Missense_Mutation_p.S1519L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1752	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AATATGCTTTCACCTACTCAT	0.413													50	76					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135431686	135431686	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135431686C>T	uc004ezu.1	+	6	6112	c.5821C>T	c.(5821-5823)CCT>TCT	p.P1941S	GPR112_uc010nsb.1_Missense_Mutation_p.P1736S|GPR112_uc010nsc.1_Missense_Mutation_p.P1708S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1941	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GTCATCAATTCCTATGTCAGG	0.433													37	38					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135441522	135441522	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135441522G>A	uc004ezu.1	+	11	7343	c.7052G>A	c.(7051-7053)AGT>AAT	p.S2351N	GPR112_uc010nsb.1_Missense_Mutation_p.S2146N|GPR112_uc010nsc.1_Intron	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2351	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AAAATCAAAAGTAAAATACAT	0.338													73	41					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135480069	135480069	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135480069G>A	uc004ezu.1	+	20	8505	c.8214G>A	c.(8212-8214)GTG>GTA	p.V2738V	GPR112_uc010nsb.1_Silent_p.V2533V	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2738	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGGATTCAGTGAATGAACAGA	0.403													29	57					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135482015	135482015	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135482015G>A	uc004ezu.1	+	21	8606	c.8315G>A	c.(8314-8316)CGA>CAA	p.R2772Q	GPR112_uc010nsb.1_Missense_Mutation_p.R2567Q	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2772	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGCAAACTTCGAAAAGATTAT	0.318													26	22					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135485428	135485428	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135485428C>T	uc004ezu.1	+	22	8892	c.8601C>T	c.(8599-8601)ATC>ATT	p.I2867I	GPR112_uc010nsb.1_Silent_p.I2662I	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2867	Helical; Name=4; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGGTGGCAATCACAGTCAGTG	0.502													12	39					0	0	1	0	0
BRS3	680	broad.mit.edu	37	X	135574322	135574322	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135574322C>T	uc004ezv.1	+	3	1137	c.988C>T	c.(988-990)CTC>TTC	p.L330F		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	330	Helical; Name=7; (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CCCCTTTGCTCTCTACTGGCT	0.478													106	73					0	0	1	0	0
VGLL1	51442	broad.mit.edu	37	X	135618328	135618328	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135618328G>A	uc004ezy.2	+	2	319	c.149G>A	c.(148-150)AGC>AAC	p.S50N		NM_016267	NP_057351	Q99990	VGLL1_HUMAN	vestigial like 1	50					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	transcription coactivator activity				0	Acute lymphoblastic leukemia(192;0.000127)					AGAGCTCTGAGCAATATCAAG	0.527													22	34					0	0	1	0	0
VGLL1	51442	broad.mit.edu	37	X	135618348	135618348	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135618348G>A	uc004ezy.2	+	2	339	c.169G>A	c.(169-171)GAA>AAA	p.E57K		NM_016267	NP_057351	Q99990	VGLL1_HUMAN	vestigial like 1	57					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	transcription coactivator activity				0	Acute lymphoblastic leukemia(192;0.000127)					GAGCCCCCAGGAATTGACCCC	0.537													36	20					0	0	1	0	0
CD40LG	959	broad.mit.edu	37	X	135732492	135732492	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135732492G>A	uc004faa.2	+	2	296	c.224G>A	c.(223-225)GGA>GAA	p.G75E	CD40LG_uc010nsd.2_Missense_Mutation_p.G75E|CD40LG_uc010nse.1_RNA	NM_000074	NP_000065	P29965	CD40L_HUMAN	CD40 ligand	75	Extracellular (Potential).				anti-apoptosis|B cell proliferation|inflammatory response|isotype switching|leukocyte cell-cell adhesion|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of interleukin-12 production	extracellular space|integral to plasma membrane|soluble fraction	CD40 receptor binding|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)				Atorvastatin(DB01076)	TGCAACACAGGAGAAAGATCC	0.343									Immune_Deficiency_with_Hyper-IgM				55	27					0	0	1	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135758808	135758808	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:135758808C>T	uc004fab.2	-	18	2382	c.1920G>A	c.(1918-1920)TCG>TCA	p.S640S	ARHGEF6_uc011mwd.1_Silent_p.S513S|ARHGEF6_uc011mwe.1_Silent_p.S486S	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	640					apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					ATTCCTCCTCCGATGGTTTTC	0.323													22	11					0	0	1	0	0
F9	2158	broad.mit.edu	37	X	138633243	138633243	+	Silent	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:138633243T>A	uc004fas.1	+	6	572	c.543T>A	c.(541-543)GTT>GTA	p.V181V	F9_uc004fat.1_Silent_p.V143V	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	181					blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	GTGGAAGAGTTTCTGTTTCAC	0.348													28	17					0	0	1	0	0
F9	2158	broad.mit.edu	37	X	138633391	138633391	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:138633391G>A	uc004fas.1	+	6	720	c.691G>A	c.(691-693)GAA>AAA	p.E231K	F9_uc004fat.1_Missense_Mutation_p.E193K	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	231	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	TGTTGGTGGAGAAGATGCCAA	0.453													41	23					0	0	1	0	0
MCF2	4168	broad.mit.edu	37	X	138687872	138687872	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:138687872C>T	uc004fau.2	-	13	1851	c.1557G>A	c.(1555-1557)TTG>TTA	p.L519L	MCF2_uc004fav.2_Silent_p.L535L|MCF2_uc011mwl.1_Silent_p.L496L|MCF2_uc010nsh.1_Silent_p.L519L|MCF2_uc011mwm.1_Silent_p.L480L|MCF2_uc011mwn.1_Silent_p.L664L|MCF2_uc004faw.2_Silent_p.L579L|MCF2_uc011mwo.1_Silent_p.L595L	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	519	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					AGTCGCTTACCAACAAAACAG	0.363													83	63					0	0	1	0	0
MCF2	4168	broad.mit.edu	37	X	138697051	138697051	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:138697051G>A	uc004fau.2	-	10	1646	c.1352C>T	c.(1351-1353)TCA>TTA	p.S451L	MCF2_uc004fav.2_Missense_Mutation_p.S451L|MCF2_uc011mwl.1_Missense_Mutation_p.S412L|MCF2_uc010nsh.1_Missense_Mutation_p.S451L|MCF2_uc011mwm.1_Missense_Mutation_p.S412L|MCF2_uc011mwn.1_Missense_Mutation_p.S596L|MCF2_uc004faw.2_Missense_Mutation_p.S511L|MCF2_uc011mwo.1_Missense_Mutation_p.S511L	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	451					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					TTGTTTAGATGAAAAAAATGG	0.368													54	58					0	0	1	0	0
SPANXC	64663	broad.mit.edu	37	X	140335749	140335749	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140335749C>T	uc004fbk.2	-	2	251	c.195G>A	c.(193-195)GAG>GAA	p.E65E	SPANXC_uc004fbl.2_RNA	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X	65						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					TCAGCAGTTCCTCTGGAGATG	0.468													10	176					0	0	1	0	0
SPANXE	171489	broad.mit.edu	37	X	140785651	140785651	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140785651C>T	uc004fbq.2	-	2	358	c.265G>A	c.(265-267)GAA>AAA	p.E89K		NM_145665	NP_663698	Q8TAD1	SPNXE_HUMAN	SPANX family, member E	89						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					ACCATTATTTCCATGAATTCC	0.433													81	74					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140926196	140926196	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140926196C>T	uc011mwp.1	+	1	95	c.95C>T	c.(94-96)TCC>TTC	p.S32F		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	32										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TATGCCTTATCCCCAGTGGTG	0.562													60	38					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969396	140969396	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140969396G>A	uc011mwp.1	+	4	723	c.723G>A	c.(721-723)CTG>CTA	p.L241L		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	241	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCATTTCCCTGACAGAAGTGG	0.483													78	65					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140984946	140984946	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140984946C>T	uc011mwp.1	+	7	1402	c.1402C>T	c.(1402-1404)CTC>TTC	p.L468F	MAGEC3_uc004fbs.2_Missense_Mutation_p.L170F|MAGEC3_uc010nsj.2_Missense_Mutation_p.L170F	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	468	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCAGTTTCTTCTCCTCAAATA	0.463													33	23					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140985474	140985474	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140985474C>T	uc011mwp.1	+	8	1788	c.1788C>T	c.(1786-1788)ATC>ATT	p.I596I	MAGEC3_uc004fbs.2_Missense_Mutation_p.P346S|MAGEC3_uc010nsj.2_Missense_Mutation_p.P346S	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	596	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGTATCATCCCTAGTGCCT	0.473													64	41					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993545	140993545	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140993545C>T	uc004fbt.2	+	4	641	c.355C>T	c.(355-357)CCT>TCT	p.P119S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	119							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGAGCCCTCCTGAGGGTGA	0.522										HNSCC(15;0.026)			40	57					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993665	140993665	+	Missense_Mutation	SNP	C	T	T	rs74966399		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140993665C>T	uc004fbt.2	+	4	761	c.475C>T	c.(475-477)CCC>TCC	p.P159S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	159							protein binding	p.P159S(1)		ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGGGTTTTCCCCAGTCTGT	0.488										HNSCC(15;0.026)			87	65					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994117	140994117	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140994117C>T	uc004fbt.2	+	4	1213	c.927C>T	c.(925-927)TCC>TCT	p.S309S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	309				SSS -> PSF (in Ref. 2; AAC24227).			protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTGTGAGCTCCTCCTCCTCCT	0.478										HNSCC(15;0.026)			135	126					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994216	140994216	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140994216G>A	uc004fbt.2	+	4	1312	c.1026G>A	c.(1024-1026)ATG>ATA	p.M342I	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	342				MT -> VS (in Ref. 2; AAC24227).			protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGATTCCTATGACCTCCTCCT	0.463										HNSCC(15;0.026)			115	94					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994357	140994357	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140994357C>T	uc004fbt.2	+	4	1453	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	389							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGTCTTTTCCAGAGTTCCC	0.488										HNSCC(15;0.026)			94	86					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994727	140994727	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140994727C>T	uc004fbt.2	+	4	1823	c.1537C>T	c.(1537-1539)CCT>TCT	p.P513S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	513							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCCAGTCTCCTCTCCAGAT	0.507										HNSCC(15;0.026)			119	83					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994983	140994983	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140994983G>A	uc004fbt.2	+	4	2079	c.1793G>A	c.(1792-1794)AGC>AAC	p.S598N	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	598							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCTCAGAGCCCTCCTCAG	0.587										HNSCC(15;0.026)			215	160					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995378	140995378	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140995378C>T	uc004fbt.2	+	4	2474	c.2188C>T	c.(2188-2190)CCT>TCT	p.P730S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	730							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCAGTTTCCTCCTCAGGG	0.547										HNSCC(15;0.026)			65	71					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995456	140995456	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140995456C>T	uc004fbt.2	+	4	2552	c.2266C>T	c.(2266-2268)CCC>TCC	p.P756S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	756							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGAGTCTTCCCCAGAGTTT	0.547										HNSCC(15;0.026)			96	101					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995641	140995641	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140995641C>T	uc004fbt.2	+	4	2737	c.2451C>T	c.(2449-2451)TTC>TTT	p.F817F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	817							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGCTCCTTCCCCTCCTCCA	0.557										HNSCC(15;0.026)			85	125					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995778	140995778	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140995778C>T	uc004fbt.2	+	4	2874	c.2588C>T	c.(2587-2589)TCA>TTA	p.S863L	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	863							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCCACTTCATTGAGCCCA	0.517										HNSCC(15;0.026)			109	66					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995889	140995889	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140995889G>A	uc004fbt.2	+	4	2985	c.2699G>A	c.(2698-2700)AGC>AAC	p.S900N	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	900							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTGATAGAGAGCGAGCCCTTG	0.473										HNSCC(15;0.026)			82	82					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995902	140995902	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140995902C>T	uc004fbt.2	+	4	2998	c.2712C>T	c.(2710-2712)TTC>TTT	p.F904F	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	904							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGCCCTTGTTCACTTATACAC	0.478										HNSCC(15;0.026)			84	77					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995918	140995918	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140995918G>A	uc004fbt.2	+	4	3014	c.2728G>A	c.(2728-2730)GAA>AAA	p.E910K	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	910	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TACACTGGATGAAAAGGTGGA	0.468										HNSCC(15;0.026)			86	75					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996099	140996099	+	Missense_Mutation	SNP	C	T	T	rs143297640		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140996099C>T	uc004fbt.2	+	4	3195	c.2909C>T	c.(2908-2910)CCT>CTT	p.P970L	MAGEC1_uc010nsl.1_Missense_Mutation_p.P37L	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	970	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAAGTGGACCCTGATGACTCC	0.478										HNSCC(15;0.026)			75	60					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996416	140996416	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140996416C>T	uc004fbt.2	+	4	3512	c.3226C>T	c.(3226-3228)CAT>TAT	p.H1076Y	MAGEC1_uc010nsl.1_Missense_Mutation_p.H143Y	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1076	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCAAGAGCTCATTCAGAAGT	0.458										HNSCC(15;0.026)			24	129					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996466	140996466	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:140996466G>A	uc004fbt.2	+	4	3562	c.3276G>A	c.(3274-3276)AAG>AAA	p.K1092K	MAGEC1_uc010nsl.1_Silent_p.K159K	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1092	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCATGCTAAAGAATACCGTCC	0.453										HNSCC(15;0.026)			85	61					0	0	1	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290858	141290858	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:141290858G>A	uc004fbu.1	-	3	1264	c.916C>T	c.(916-918)CAT>TAT	p.H306Y		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	306	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTTTCTGAATGGGCTCTCGGA	0.468										HNSCC(46;0.14)			39	39					0	0	1	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291460	141291460	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:141291460G>A	uc004fbu.1	-	3	662	c.314C>T	c.(313-315)TCC>TTC	p.S105F		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	105	Ser-rich.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGAAAAAGAGGAGCAGCAGGA	0.423										HNSCC(46;0.14)			26	26					0	0	1	0	0
SPANXN3	139067	broad.mit.edu	37	X	142596707	142596707	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142596707G>A	uc004fbw.2	-	2	451	c.363C>T	c.(361-363)TCC>TCT	p.S121S		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	121										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCCTGTGAGGATCCTTCAG	0.458													69	43					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142716446	142716446	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142716446C>T	uc004fbx.2	-	2	2855	c.2479G>A	c.(2479-2481)GTC>ATC	p.V827I	SLITRK4_uc004fby.2_Missense_Mutation_p.V827I	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	827	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCAAGGACCTGTAGGTAG	0.403													36	24					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717018	142717018	+	Missense_Mutation	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142717018A>G	uc004fbx.2	-	2	2283	c.1907T>C	c.(1906-1908)TTT>TCT	p.F636S	SLITRK4_uc004fby.2_Missense_Mutation_p.F636S	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	636	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AAGAAGGCAAAAAGCAACAAA	0.493													40	34					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717102	142717102	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142717102C>T	uc004fbx.2	-	2	2199	c.1823G>A	c.(1822-1824)CGA>CAA	p.R608Q	SLITRK4_uc004fby.2_Missense_Mutation_p.R608Q	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	608	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGGAGGACTTCGAATGGGACC	0.418													47	43					0	0	1	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795252	142795252	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142795252G>A	uc004fbz.2	-	2	1180	c.426C>T	c.(424-426)GAC>GAT	p.D142D		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	142										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CTTCAGATGAGTCCAGGTCTT	0.522													36	215					0	0	1	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795263	142795263	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142795263C>T	uc004fbz.2	-	2	1169	c.415G>A	c.(415-417)GAA>AAA	p.E139K		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	139										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCAGGTCTTCGTCCTCCTGT	0.517													15	201					0	0	1	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795341	142795341	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142795341C>T	uc004fbz.2	-	2	1091	c.337G>A	c.(337-339)GAA>AAA	p.E113K		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	113										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCAGGTCTTCGTCCTCCTGT	0.532													18	241					0	0	1	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795591	142795591	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142795591C>T	uc004fbz.2	-	2	841	c.87G>A	c.(85-87)GAG>GAA	p.E29E		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	29										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TGTTCGGTGCCTCCTGCATCT	0.418													20	21					0	0	1	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795593	142795593	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142795593C>T	uc004fbz.2	-	2	839	c.85G>A	c.(85-87)GAG>AAG	p.E29K		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	29										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTCGGTGCCTCCTGCATCTGA	0.423													21	20					0	0	1	0	0
UBE2NL	389898	broad.mit.edu	37	X	142967526	142967526	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:142967526G>A	uc004fca.2	+	1	354	c.324G>A	c.(322-324)TCG>TCA	p.S108S		NM_001012989	NP_001013007	Q5JXB2	UE2NL_HUMAN	ubiquitin-conjugating enzyme E2N-like	108							acid-amino acid ligase activity				0	Acute lymphoblastic leukemia(192;6.56e-05)					TTCTGCTATCGATCCAGGCCT	0.423													70	47					0	0	1	0	0
SPANXN1	494118	broad.mit.edu	37	X	144329145	144329145	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:144329145G>A	uc004fcb.2	+	1	39	c.39G>A	c.(37-39)AGG>AGA	p.R13R		NM_001009614	NP_001009614	Q5VSR9	SPXN1_HUMAN	SPANX-N1 protein	13											0	Acute lymphoblastic leukemia(192;6.56e-05)					GGGAGAAGAGGAAGAGCCCCT	0.323													90	60					0	0	1	0	0
FMR1	2332	broad.mit.edu	37	X	147026416	147026416	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:147026416C>T	uc010nst.2	+	15	1688	c.1499C>T	c.(1498-1500)TCT>TTT	p.S500F	FMR1_uc004fcj.2_Missense_Mutation_p.S477F|FMR1_uc004fck.3_Intron|FMR1_uc004fcl.3_Missense_Mutation_p.S340F|FMR1_uc011mxa.1_Missense_Mutation_p.S147F	NM_002024	NP_002015	Q06787	FMR1_HUMAN	fragile X mental retardation 1	500	Interaction with RANBP9.			S->A: Loss of phosphorylation.	mRNA transport|negative regulation of translational initiation	cytoplasm|mRNA cap binding complex|nucleolus|nucleoplasm|soluble fraction	mRNA binding|protein binding			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCAAATGCTTCTGAAACAGAA	0.428									Fragile_X_syndrome				4	23					0	0	1	0	0
FMR1NB	158521	broad.mit.edu	37	X	147062951	147062951	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:147062951G>A	uc004fcm.2	+	1	103	c.29G>A	c.(28-30)GGG>GAG	p.G10E		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	10	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AAAGCGAAGGGGAGGAATAGG	0.597													17	37					0	0	1	0	0
AFF2	2334	broad.mit.edu	37	X	147743900	147743900	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:147743900G>A	uc004fcp.2	+	3	1131	c.652G>A	c.(652-654)GAA>AAA	p.E218K	AFF2_uc004fco.2_Missense_Mutation_p.E214K|AFF2_uc004fcq.2_Missense_Mutation_p.E214K|AFF2_uc004fcr.2_Missense_Mutation_p.E214K|AFF2_uc011mxb.1_Missense_Mutation_p.E218K|AFF2_uc004fcs.2_Missense_Mutation_p.E214K	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	218					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					ATCTGCAAAGGAAGACAGTAA	0.468													97	53					0	0	1	0	0
AFF2	2334	broad.mit.edu	37	X	147985774	147985774	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:147985774G>A	uc004fcp.2	+	9	1862	c.1383G>A	c.(1381-1383)AGG>AGA	p.R461R	AFF2_uc004fco.2_Silent_p.R422R|AFF2_uc004fcq.2_Silent_p.R451R|AFF2_uc004fcr.2_Silent_p.R422R|AFF2_uc011mxb.1_Silent_p.R426R|AFF2_uc004fcs.2_Silent_p.R428R|AFF2_uc011mxc.1_Silent_p.R102R	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	461					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CAAAACCTAGGAATAATCCTG	0.323													69	37					0	0	1	0	0
AFF2	2334	broad.mit.edu	37	X	148037913	148037913	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:148037913C>T	uc004fcp.2	+	11	2817	c.2338C>T	c.(2338-2340)CCT>TCT	p.P780S	AFF2_uc004fcq.2_Missense_Mutation_p.P770S|AFF2_uc004fcr.2_Missense_Mutation_p.P741S|AFF2_uc011mxb.1_Missense_Mutation_p.P745S|AFF2_uc004fcs.2_Missense_Mutation_p.P747S|AFF2_uc011mxc.1_Missense_Mutation_p.P421S	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	780					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					AACATTTTCACCTATTCCTGT	0.458													26	40					0	0	1	0	0
AFF2	2334	broad.mit.edu	37	X	148055131	148055131	+	Missense_Mutation	SNP	T	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:148055131T>A	uc004fcp.2	+	16	3877	c.3398T>A	c.(3397-3399)CTC>CAC	p.L1133H	AFF2_uc004fcq.2_Missense_Mutation_p.L1123H|AFF2_uc004fcr.2_Missense_Mutation_p.L1094H|AFF2_uc011mxb.1_Missense_Mutation_p.L1098H|AFF2_uc004fcs.2_Missense_Mutation_p.L1098H|AFF2_uc011mxc.1_Missense_Mutation_p.L774H	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	1133					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					ACTGTGGAGCTCCTCAGGTGA	0.438													16	20					0	0	1	0	0
MAGEA11	4110	broad.mit.edu	37	X	148796219	148796219	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:148796219G>A	uc004fdq.2	+	3	277	c.175G>A	c.(175-177)GAT>AAT	p.D59N	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.D30N	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	59						cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GTGGTCCCAGGATCTGCCAAG	0.532													16	3					0	0	1	0	0
MAGEA11	4110	broad.mit.edu	37	X	148798216	148798216	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:148798216G>A	uc004fdq.2	+	5	1172	c.1070G>A	c.(1069-1071)AGG>AAG	p.R357K	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.R328K	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	357	MAGE.					cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GAGCCCAAGAGGCTCCTTACC	0.562													102	78					0	0	1	0	0
GPR50	9248	broad.mit.edu	37	X	150349343	150349343	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150349343G>A	uc010ntg.1	+	2	1423	c.1288G>A	c.(1288-1290)GGT>AGT	p.G430S		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	430	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GCCTGCCTCTGGTCACCCCAA	0.547													145	100					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150773146	150773146	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150773146G>A	uc004fev.3	+	3	389	c.57G>A	c.(55-57)AGG>AGA	p.R19R		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	19						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCTCTCAAAGGAAATTAAACT	0.333													15	8					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150817106	150817106	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150817106G>A	uc004fev.3	+	9	981	c.649G>A	c.(649-651)GGA>AGA	p.G217R		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	217						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGTCAAAGAGGACACACTAG	0.328													92	57					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150828306	150828306	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150828306C>T	uc004fev.3	+	10	1171	c.839C>T	c.(838-840)CCA>CTA	p.P280L		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	280						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCTGAATCTCCAGGTAGGTAC	0.373													31	44					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150840204	150840204	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150840204C>T	uc004fev.3	+	13	1722	c.1390C>T	c.(1390-1392)CTC>TTC	p.L464F		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	464						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ATCCAACTCTCTCAAAAACAC	0.463													28	27					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150840933	150840933	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150840933G>A	uc004fev.3	+	14	2048	c.1716G>A	c.(1714-1716)CTG>CTA	p.L572L		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	572						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					agcagccactgaagcaTAATG	0.234													7	27					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150842649	150842649	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150842649C>T	uc004fev.3	+	15	2498	c.2166C>T	c.(2164-2166)ACC>ACT	p.T722T		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	722						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCCAACCCACCTACCATCAGG	0.567													36	52					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150842658	150842658	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150842658G>A	uc004fev.3	+	15	2507	c.2175G>A	c.(2173-2175)CAG>CAA	p.Q725Q		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	725						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCTACCATCAGGTATGGGACA	0.562													11	65					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150844496	150844496	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150844496G>A	uc004fev.3	+	16	2535	c.2203G>A	c.(2203-2205)GGA>AGA	p.G735R		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	735						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGAGTCGAGGGACCTCCTGA	0.527													80	57					0	0	1	0	0
PRRG3	79057	broad.mit.edu	37	X	150868515	150868515	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150868515C>T	uc004few.1	+	3	445	c.55C>T	c.(55-57)CGT>TGT	p.R19C		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	19						extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					ACGATTCCCTCGTGCCAATGA	0.582													27	17					0	0	1	0	0
PRRG3	79057	broad.mit.edu	37	X	150868557	150868557	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150868557G>A	uc004few.1	+	3	487	c.97G>A	c.(97-99)GAG>AAG	p.E33K		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	33	Gla.|Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGCACCATCGAGCGAGAGTG	0.562													26	20					0	0	1	0	0
PRRG3	79057	broad.mit.edu	37	X	150869196	150869196	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150869196C>T	uc004few.1	+	4	777	c.387C>T	c.(385-387)CTC>CTT	p.L129L		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	129	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGCACACCCTCCCCCGGGTCA	0.652													43	25					0	0	1	0	0
FATE1	89885	broad.mit.edu	37	X	150891136	150891136	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150891136G>A	uc004fex.2	+	5	541	c.457G>A	c.(457-459)GAA>AAA	p.E153K		NM_033085	NP_149076	Q969F0	FATE1_HUMAN	fetal and adult testis expressed transcript	153						endoplasmic reticulum|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CGCCCTGGAGGAACAGGGCGC	0.642													38	23					0	0	1	0	0
FATE1	89885	broad.mit.edu	37	X	150891177	150891177	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150891177C>T	uc004fex.2	+	5	582	c.498C>T	c.(496-498)ATC>ATT	p.I166I		NM_033085	NP_149076	Q969F0	FATE1_HUMAN	fetal and adult testis expressed transcript	166	Helical; (Potential).					endoplasmic reticulum|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CCCTGATCATCGCCGTGCTGG	0.652													28	19					0	0	1	0	0
CNGA2	1260	broad.mit.edu	37	X	150907031	150907031	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:150907031G>A	uc004fey.1	+	2	300	c.76G>A	c.(76-78)GCC>ACC	p.A26T		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	26	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGCCATCAAGGCCAATGGCAA	0.502													43	33					0	0	1	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092435	151092435	+	Missense_Mutation	SNP	C	T	T	rs140138379		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151092435C>T	uc004fez.2	+	3	455	c.299C>T	c.(298-300)CCT>CTT	p.P100L	MAGEA4_uc004ffa.2_Missense_Mutation_p.P100L|MAGEA4_uc004ffb.2_Missense_Mutation_p.P100L|MAGEA4_uc004ffc.2_Missense_Mutation_p.P100L|MAGEA4_uc004ffd.2_Missense_Mutation_p.P100L	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	100							protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGCACCTCGCCTGACGCAGAG	0.557													29	49					0	0	1	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092491	151092491	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151092491C>T	uc004fez.2	+	3	511	c.355C>T	c.(355-357)CAT>TAT	p.H119Y	MAGEA4_uc004ffa.2_Missense_Mutation_p.H119Y|MAGEA4_uc004ffb.2_Missense_Mutation_p.H119Y|MAGEA4_uc004ffc.2_Missense_Mutation_p.H119Y|MAGEA4_uc004ffd.2_Missense_Mutation_p.H119Y	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	119	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGTTGGCTCATTTTCTGCT	0.517													39	36					0	0	1	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092793	151092793	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151092793G>A	uc004fez.2	+	3	813	c.657G>A	c.(655-657)GAG>GAA	p.E219E	MAGEA4_uc004ffa.2_Silent_p.E219E|MAGEA4_uc004ffb.2_Silent_p.E219E|MAGEA4_uc004ffc.2_Silent_p.E219E|MAGEA4_uc004ffd.2_Silent_p.E219E	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	219	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCGCCTCTGAGGAGGAAATCT	0.552													57	53					0	0	1	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092811	151092811	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151092811G>A	uc004fez.2	+	3	831	c.675G>A	c.(673-675)GAG>GAA	p.E225E	MAGEA4_uc004ffa.2_Silent_p.E225E|MAGEA4_uc004ffb.2_Silent_p.E225E|MAGEA4_uc004ffc.2_Silent_p.E225E|MAGEA4_uc004ffd.2_Silent_p.E225E	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	225	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCTGGGAGGAGCTGGGTGTGA	0.537													56	53					0	0	1	0	0
MAGEA4	4103	broad.mit.edu	37	X	151093031	151093031	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151093031C>T	uc004fez.2	+	3	1051	c.895C>T	c.(895-897)CGC>TGC	p.R299C	MAGEA4_uc004ffa.2_Missense_Mutation_p.R299C|MAGEA4_uc004ffb.2_Missense_Mutation_p.R299C|MAGEA4_uc004ffc.2_Missense_Mutation_p.R299C|MAGEA4_uc004ffd.2_Missense_Mutation_p.R299C	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	299	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGCAAGAGTTCGCATTGCCTA	0.567													67	50					0	0	1	0	0
GABRE	2564	broad.mit.edu	37	X	151123529	151123530	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151123529_151123530GG>AA	uc004ffi.2	-	9	1218_1219	c.1164_1165CC>TT	c.(1162-1167)GCCCGT>GCTTGT	p.R389C	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	389	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GCACGGGTACGGGCATGGGCAC	0.545													3	6					0	0	1	0	0
GABRE	2564	broad.mit.edu	37	X	151128379	151128379	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151128379G>A	uc004ffi.2	-	6	770	c.716C>T	c.(715-717)TCC>TTC	p.S239F	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA|MIR224_hsa-mir-224|MI0000301_5'Flank|MIR452_hsa-mir-452|MI0001733_5'Flank	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	239	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GAGCTTCCAGGAGTTCTTCTC	0.433													32	39					0	0	1	0	0
MAGEA5	4104	broad.mit.edu	37	X	151283670	151283670	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151283670C>T	uc004ffj.2	-	3	548	c.343G>A	c.(343-345)GAC>AAC	p.D115N		NM_021049	NP_066387	P43359	MAGA5_HUMAN	melanoma antigen family A, 5	115	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TGAATCAAGTCAGCCACCTTC	0.502													10	66					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303861	151303861	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151303861C>T	uc004ffk.2	-	5	640	c.232G>A	c.(232-234)GAT>AAT	p.D78N	MAGEA10_uc004ffl.2_Missense_Mutation_p.D78N	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	78											0	Acute lymphoblastic leukemia(192;6.56e-05)					GGTGTCTCATCATCAGCAGAA	0.398													70	57					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303874	151303874	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151303874C>T	uc004ffk.2	-	5	627	c.219G>A	c.(217-219)GAG>GAA	p.E73E	MAGEA10_uc004ffl.2_Silent_p.E73E	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	73											0	Acute lymphoblastic leukemia(192;6.56e-05)					CAGCAGAAACCTCCTCTGGGG	0.388													55	47					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303883	151303883	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151303883G>A	uc004ffk.2	-	5	618	c.210C>T	c.(208-210)ACC>ACT	p.T70T	MAGEA10_uc004ffl.2_Silent_p.T70T	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	70											0	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCCTCTGGGGTGCTTGGTA	0.388													54	40					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303925	151303925	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151303925G>A	uc004ffk.2	-	5	576	c.168C>T	c.(166-168)TCC>TCT	p.S56S	MAGEA10_uc004ffl.2_Silent_p.S56S	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	56	Poly-Ser.										0	Acute lymphoblastic leukemia(192;6.56e-05)					aggaggaagaggaggaggagg	0.413													19	40					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151304045	151304045	+	Silent	SNP	A	G	G			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151304045A>G	uc004ffk.2	-	5	456	c.48T>C	c.(46-48)CTT>CTC	p.L16L	MAGEA10_uc004ffl.2_Silent_p.L16L	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	16											0	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGGGATTGAAGATCTTCTT	0.542													29	29					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151304071	151304071	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151304071G>A	uc004ffk.2	-	5	430	c.22C>T	c.(22-24)CAG>TAG	p.Q8*	MAGEA10_uc004ffl.2_Nonsense_Mutation_p.Q8*	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	8											0	Acute lymphoblastic leukemia(192;6.56e-05)					ATGCAGCGCTGACGCTTTGGA	0.602													41	39					0	0	1	0	0
GABRA3	2556	broad.mit.edu	37	X	151376574	151376575	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151376574_151376575CC>TT	uc010ntk.1	-	7	916_917	c.676_677GG>AA	c.(676-678)GGA>AAA	p.G226K		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	226	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTTGTTCTTTCCGAGAGTCCAA	0.446													56	35					0	0	1	0	0
GABRQ	55879	broad.mit.edu	37	X	151818293	151818293	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151818293C>T	uc004ffp.1	+	6	719	c.699C>T	c.(697-699)TTC>TTT	p.F233F		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	233	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCTCAGTTCACTTTCCTGG	0.498													36	50					0	0	1	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900098	151900098	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151900098C>T	uc010ntp.2	-	3	1057	c.703G>A	c.(703-705)GAG>AAG	p.E235K	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.E235K	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	235	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					ACACTGTCCTCCCTCCCATCA	0.562													86	69					0	0	1	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900161	151900161	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151900161C>T	uc010ntp.2	-	3	994	c.640G>A	c.(640-642)GAC>AAC	p.D214N	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.D214N	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	214	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGGGCACAGTCGCCCTCTTTT	0.582													87	72					0	0	1	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900372	151900372	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151900372G>A	uc010ntp.2	-	3	783	c.429C>T	c.(427-429)TTC>TTT	p.F143F	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.F143F|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	143	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGAAGTCCTGGAAATTTCTGA	0.507													100	66					0	0	1	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935259	151935259	+	Missense_Mutation	SNP	G	A	A	rs35981027		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151935259G>A	uc004fgp.2	-	3	1117	c.908C>T	c.(907-909)CCC>CTC	p.P303L		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	303	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					CTCATGCAGGGGTGGGTAGGA	0.577													21	128					0	0	1	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935344	151935344	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:151935344G>A	uc004fgp.2	-	3	1032	c.823C>T	c.(823-825)CCA>TCA	p.P275S		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	275	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGCCCTTGGACCCCACAGG	0.532													73	52					0	0	1	0	0
NSDHL	50814	broad.mit.edu	37	X	152034497	152034497	+	Silent	SNP	C	T	T	rs147293409	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:152034497C>T	uc004fgt.1	+	7	939	c.678C>T	c.(676-678)TTC>TTT	p.F226F	NSDHL_uc004fgs.1_Silent_p.F226F	NM_001129765	NP_001123237	Q15738	NSDHL_HUMAN	NAD(P) dependent steroid dehydrogenase-like	226					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity|sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity				0	Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	AGATGAAGTTCGTGATTGGGT	0.572													47	38					0	0	1	0	0
PNMA5	114824	broad.mit.edu	37	X	152159171	152159171	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:152159171G>A	uc010ntw.2	-	3	1311	c.972C>T	c.(970-972)CTC>CTT	p.L324L	PNMA5_uc004fha.3_Silent_p.L324L|PNMA5_uc010ntx.2_Silent_p.L324L|PNMA5_uc004fgy.3_Silent_p.L324L	NM_001103151	NP_001096621	Q96PV4	PNMA5_HUMAN	paraneoplastic antigen like 5	324					apoptosis					ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CATCTCGAATGAGCTTCATTA	0.562													23	26					0	0	1	0	0
PNMA5	114824	broad.mit.edu	37	X	152159384	152159384	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:152159384C>T	uc010ntw.2	-	3	1098	c.759G>A	c.(757-759)CCG>CCA	p.P253P	PNMA5_uc004fha.3_Silent_p.P253P|PNMA5_uc010ntx.2_Silent_p.P253P|PNMA5_uc004fgy.3_Silent_p.P253P	NM_001103151	NP_001096621	Q96PV4	PNMA5_HUMAN	paraneoplastic antigen like 5	253					apoptosis					ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTCCAATCTTCGGAGAGGTCT	0.522													45	26					0	0	1	0	0
HAUS7	55559	broad.mit.edu	37	X	152728076	152728076	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:152728076G>A	uc004fho.1	-	4	934	c.376C>T	c.(376-378)CTC>TTC	p.L126F	HAUS7_uc004fhl.2_RNA|HAUS7_uc004fhm.2_RNA|HAUS7_uc004fhn.1_Missense_Mutation_p.L126F|HAUS7_uc004fhp.1_RNA|HAUS7_uc011myq.1_RNA	NM_017518	NP_059988	Q99871	HAUS7_HUMAN	HAUS augmin-like complex subunit 7	126					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleolus|plasma membrane|spindle	thioesterase binding				0						ACCTTGAGGAGCTCCTGGTCA	0.587													12	12					0	0	1	0	0
BGN	633	broad.mit.edu	37	X	152770723	152770723	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:152770723C>T	uc004fhr.1	+	3	438	c.266C>T	c.(265-267)TCC>TTC	p.S89F	BGN_uc004fhq.1_RNA	NM_001711	NP_001702	P21810	PGS1_HUMAN	biglycan preproprotein	89	LRR 1.					proteinaceous extracellular matrix|transport vesicle	extracellular matrix structural constituent			breast(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AAAGAGATCTCCCCTGACACC	0.597													34	27					0	0	1	0	0
ATP2B3	492	broad.mit.edu	37	X	152818521	152818521	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:152818521G>A	uc004fht.1	+	11	1978	c.1852G>A	c.(1852-1854)GAA>AAA	p.E618K	ATP2B3_uc004fhs.1_Missense_Mutation_p.E618K	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	618	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CAGCAATGGCGAACTCCGGGG	0.577													23	13					0	0	1	0	0
PDZD4	57595	broad.mit.edu	37	X	153072226	153072226	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153072226C>T	uc004fiz.1	-	4	707	c.457G>A	c.(457-459)GAG>AAG	p.E153K	PDZD4_uc004fiy.1_Missense_Mutation_p.E78K|PDZD4_uc004fix.2_Missense_Mutation_p.E57K|PDZD4_uc004fja.1_Missense_Mutation_p.E159K|PDZD4_uc011mze.1_Missense_Mutation_p.E44K	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	153	PDZ.					cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGGTCCTCCTCGTCGTCCGTG	0.632													7	48					0	0	1	0	0
L1CAM	3897	broad.mit.edu	37	X	153133547	153133547	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153133547G>A	uc004fjb.2	-	14	1842	c.1734C>T	c.(1732-1734)ATC>ATT	p.I578I	L1CAM_uc004fjc.2_Silent_p.I578I|L1CAM_uc010nuo.2_Silent_p.I573I	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	578	Ig-like C2-type 6.|Extracellular (Potential).				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCAGGCTGTGGATGACCAGGC	0.597													7	33					0	0	1	0	0
ARHGAP4	393	broad.mit.edu	37	X	153174589	153174589	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153174589G>A	uc004fjk.1	-	21	2584	c.2542C>T	c.(2542-2544)CCC>TCC	p.P848S	ARHGAP4_uc004fjj.1_Missense_Mutation_p.P199S|ARHGAP4_uc011mzf.1_Missense_Mutation_p.P825S|ARHGAP4_uc004fjl.1_Missense_Mutation_p.P888S|ARHGAP4_uc010nup.1_RNA	NM_001666	NP_001657	P98171	RHG04_HUMAN	Rho GTPase activating protein 4 isoform 2	848					apoptosis|cytoskeleton organization|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|Rho protein signal transduction	cytosol|focal adhesion|nucleus	Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			central_nervous_system(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGTCCAGAGGGTCCCATGGCC	0.642													19	9					0	0	1	0	0
HCFC1	3054	broad.mit.edu	37	X	153217341	153217341	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153217341G>A	uc004fjp.2	-	20	5739	c.5211C>T	c.(5209-5211)GCC>GCT	p.A1737A		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	1737					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGACCGTGCCGGCCAGCTCAT	0.657													22	7					0	0	1	0	0
HCFC1	3054	broad.mit.edu	37	X	153221832	153221832	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153221832G>A	uc004fjp.2	-	16	3194	c.2666C>T	c.(2665-2667)ACC>ATC	p.T889I		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	889	Interaction with ZBTB17.|Interaction with GABP2.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGTGGAGACGGTGCCTGTCAC	0.642													10	48					0	0	1	0	0
MECP2	4204	broad.mit.edu	37	X	153296314	153296314	+	Missense_Mutation	SNP	G	A	A	rs61751450		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153296314G>A	uc004fjv.2	-	4	1191	c.965C>T	c.(964-966)CCC>CTC	p.P322L	MECP2_uc004fjw.2_Missense_Mutation_p.P334L	NM_004992	NP_004983	P51608	MECP2_HUMAN	methyl CpG binding protein 2 isoform 1	322			P -> S (in MRXS13).|P -> A (in RTT).|P -> L (in RTT).		negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	heterochromatin|nucleus	double-stranded methylated DNA binding|protein domain specific binding|protein N-terminus binding|transcription corepressor activity				0	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CACCAGCAGGGGCTTCACCAC	0.597													42	27					0	0	1	0	0
TKTL1	8277	broad.mit.edu	37	X	153541044	153541044	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153541044C>T	uc004fkg.2	+	6	970	c.784C>T	c.(784-786)CCC>TCC	p.P262S	TKTL1_uc011mzl.1_Missense_Mutation_p.P256S|TKTL1_uc011mzm.1_Intron|TKTL1_uc004fkh.2_Missense_Mutation_p.P206S	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	262					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGACCCACAGCCCCCCATTGA	0.468													36	27					0	0	1	0	0
FLNA	2316	broad.mit.edu	37	X	153585856	153585856	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153585856G>A	uc004fkk.2	-	29	5140	c.4891C>T	c.(4891-4893)CCG>TCG	p.P1631S	FLNA_uc011mzn.1_5'UTR|FLNA_uc010nuu.1_Missense_Mutation_p.P1631S	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	1631	Filamin 14.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ACGCGGTACGGGGAGAAGGGG	0.652													14	12					0	0	1	0	0
PLXNA3	55558	broad.mit.edu	37	X	153696708	153696708	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153696708C>T	uc004flm.2	+	23	4199	c.4026C>T	c.(4024-4026)TTC>TTT	p.F1342F		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	1342	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCCGCGCGTTCGTGCTTACCT	0.697													14	10					0	0	1	0	0
G6PD	2539	broad.mit.edu	37	X	153761272	153761272	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153761272G>A	uc004fly.1	-	9	1049	c.936C>T	c.(934-936)CCC>CCT	p.P312P	G6PD_uc004flx.1_Silent_p.P342P	NM_001042351	NP_001035810	P11413	G6PD_HUMAN	glucose-6-phosphate dehydrogenase isoform b	312					cellular response to oxidative stress|cholesterol biosynthetic process|cytokine production|erythrocyte maturation|glucose 6-phosphate metabolic process|glutathione metabolic process|negative regulation of protein glutathionylation|pentose-phosphate shunt, oxidative branch|ribose phosphate biosynthetic process	centrosome|cytosol|internal side of plasma membrane|intracellular membrane-bounded organelle	glucose binding|glucose-6-phosphate dehydrogenase activity|NADP binding|protein homodimerization activity			ovary(4)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCTCTCCATCGGGGTTCCCCA	0.612													8	60					0	0	1	0	0
CTAG2	30848	broad.mit.edu	37	X	153880692	153880692	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153880692C>T	uc004fmi.1	-	2	536	c.483G>A	c.(481-483)GAG>GAA	p.E161E	CTAG2_uc004fmh.1_Intron	NM_020994	NP_066274	O75638	CTAG2_HUMAN	cancer/testis antigen 2 isoform LAGE-1b	161						centrosome				pancreas(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTTTCTGCCCCTCCGGGGAGG	0.627													49	48					0	0	1	0	0
CTAG2	30848	broad.mit.edu	37	X	153880896	153880896	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153880896C>T	uc004fmi.1	-	2	332	c.279G>A	c.(277-279)ACG>ACA	p.T93T	CTAG2_uc004fmh.1_Silent_p.T93T	NM_020994	NP_066274	O75638	CTAG2_HUMAN	cancer/testis antigen 2 isoform LAGE-1b	93						centrosome				pancreas(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AGAAAGGCATCGTGATGTGCC	0.642													23	19					0	0	1	0	0
CTAG2	30848	broad.mit.edu	37	X	153881735	153881735	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:153881735C>T	uc004fmi.1	-	1	108	c.55G>A	c.(55-57)GGA>AGA	p.G19R	CTAG2_uc004fmh.1_Missense_Mutation_p.G19R	NM_020994	NP_066274	O75638	CTAG2_HUMAN	cancer/testis antigen 2 isoform LAGE-1b	19	Gly-rich.					centrosome				pancreas(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCAGGGCCTCCTGGGCCATCA	0.721													4	7					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	154045434	154045434	+	RNA	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:154045434C>T	uc004fmr.1	-	1		c.354G>A								full-length cDNA clone CS0DM009YP14 of Fetal liver of Homo sapiens (human).																		CCTCAGTTTTCGTTTCCCTGT	0.433													12	6					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154124377	154124377	+	Missense_Mutation	SNP	C	T	T	rs137852366		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:154124377C>T	uc004fmt.2	-	22	6575	c.6404G>A	c.(6403-6405)CGA>CAA	p.R2135Q	F8_uc010nvi.1_3'UTR	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	2135	F5/8 type C 1.		R -> P (in HEMA; severe).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GGAATTTCCTCGATAAGTCTG	0.408													24	113					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154158558	154158558	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:154158558C>T	uc004fmt.2	-	14	3678	c.3507G>A	c.(3505-3507)GTG>GTA	p.V1169V		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1169	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TTCCTACTACCACTTTGTTTT	0.403													54	31					0	0	1	0	0
SPRY3	10251	broad.mit.edu	37	X	155004272	155004272	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:155004272C>T	uc004fnq.1	+	2	1193	c.739C>T	c.(739-741)CTG>TTG	p.L247L	SPRY3_uc010nvl.1_Silent_p.L148L	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	247	SPR.|Cys-rich.				multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					ATGCCTCCATCTGTGCCAACA	0.587													82	170					0	0	1	0	0
VAMP7	6845	broad.mit.edu	37	X	155119159	155119159	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:155119159G>A	uc004fnr.2	+	2	204	c.30G>A	c.(28-30)AGG>AGA	p.R10R	VAMP7_uc004fnt.2_Silent_p.R10R|VAMP7_uc011naa.1_5'UTR|VAMP7_uc011nab.1_5'UTR|VAMP7_uc004fns.2_Silent_p.R10R|VAMP7_uc011nac.1_5'UTR	NM_005638	NP_005629	P51809	VAMP7_HUMAN	vesicle-associated membrane protein 7 isoform 1	10	Longin.|Cytoplasmic (Potential).				calcium ion-dependent exocytosis|endosome to lysosome transport|eosinophil degranulation|ER to Golgi vesicle-mediated transport|neutrophil degranulation|phagocytosis, engulfment|post-Golgi vesicle-mediated transport|protein transport|vesicle fusion	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|phagocytic vesicle membrane|plasma membrane|SNARE complex|transport vesicle membrane	protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TTGTTGCCAGGGGGACCACTA	0.403													46	112					0	0	1	0	0
VAMP7	6845	broad.mit.edu	37	X	155127867	155127867	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:155127867C>T	uc004fnr.2	+	4	470	c.296C>T	c.(295-297)CCA>CTA	p.P99L	VAMP7_uc004fnt.2_Missense_Mutation_p.P58L|VAMP7_uc011naa.1_Missense_Mutation_p.P60L|VAMP7_uc011nab.1_5'UTR|VAMP7_uc004fns.2_Missense_Mutation_p.P99L|VAMP7_uc011nac.1_Missense_Mutation_p.P32L	NM_005638	NP_005629	P51809	VAMP7_HUMAN	vesicle-associated membrane protein 7 isoform 1	99	Longin.|Cytoplasmic (Potential).				calcium ion-dependent exocytosis|endosome to lysosome transport|eosinophil degranulation|ER to Golgi vesicle-mediated transport|neutrophil degranulation|phagocytosis, engulfment|post-Golgi vesicle-mediated transport|protein transport|vesicle fusion	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|phagocytic vesicle membrane|plasma membrane|SNARE complex|transport vesicle membrane	protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					ACAGCACTTCCATATGCCATG	0.393													58	116					0	0	1	0	0
IL9R	3581	broad.mit.edu	37	X	155235133	155235133	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:155235133C>T	uc004fnv.1	+	6	949	c.770C>T	c.(769-771)CCC>CTC	p.P257L	IL9R_uc010nvn.2_Missense_Mutation_p.P236L|IL9R_uc004fnu.1_Missense_Mutation_p.P292L	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	257	Extracellular (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TTCCAGGCTCCCCAGAGACAA	0.617													9	31					0	0	1	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4924939	4924939	+	Silent	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:4924939G>A	uc004fqo.2	+	1	809	c.75G>A	c.(73-75)CGG>CGA	p.R25R	PCDH11Y_uc010nwg.1_Silent_p.R14R|PCDH11Y_uc004fql.1_Silent_p.R14R|PCDH11Y_uc004fqm.1_Silent_p.R14R|PCDH11Y_uc004fqn.1_Silent_p.R25R	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	25					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GTGTTGTGCGGGTTAATACAA	0.428													28	35					0	0	1	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4925457	4925457	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:4925457C>T	uc004fqo.2	+	1	1327	c.593C>T	c.(592-594)CCT>CTT	p.P198L	PCDH11Y_uc010nwg.1_Missense_Mutation_p.P187L|PCDH11Y_uc004fql.1_Missense_Mutation_p.P187L|PCDH11Y_uc004fqm.1_Missense_Mutation_p.P187L|PCDH11Y_uc004fqn.1_Missense_Mutation_p.P198L	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	198	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GCTGTTGATCCTGACGTAGGC	0.348													42	29					0	0	1	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4966352	4966352	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:4966352G>A	uc004fqo.2	+	2	1467	c.733G>A	c.(733-735)GAT>AAT	p.D245N	PCDH11Y_uc010nwg.1_Missense_Mutation_p.D234N|PCDH11Y_uc004fql.1_Missense_Mutation_p.D234N|PCDH11Y_uc004fqm.1_Missense_Mutation_p.D234N|PCDH11Y_uc004fqn.1_Missense_Mutation_p.D245N|PCDH11Y_uc004fqp.1_Missense_Mutation_p.D16N	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	245	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GGAAGAGAAGGATACCTATGT	0.398													61	102					0	0	1	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4968065	4968065	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:4968065G>A	uc004fqo.2	+	2	3180	c.2446G>A	c.(2446-2448)GAA>AAA	p.E816K	PCDH11Y_uc010nwg.1_Missense_Mutation_p.E805K|PCDH11Y_uc004fql.1_Missense_Mutation_p.E805K|PCDH11Y_uc004fqm.1_Missense_Mutation_p.E805K|PCDH11Y_uc004fqn.1_Missense_Mutation_p.E816K|PCDH11Y_uc004fqp.1_Missense_Mutation_p.E587K	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	816	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						ACTGATTAATGAACTGGTGCG	0.438													21	85					0	0	1	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	5605450	5605450	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:5605450C>T	uc004fqo.2	+	5	4224	c.3490C>T	c.(3490-3492)CTA>TTA	p.L1164L		NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	1164	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GGCCTCTGCTCTATGCCACAG	0.552													37	19					0	0	1	0	0
TBL1Y	90665	broad.mit.edu	37	Y	6932137	6932137	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:6932137C>T	uc004frb.2	+	8	1051	c.404C>T	c.(403-405)CCA>CTA	p.P135L	TBL1Y_uc004frc.2_Missense_Mutation_p.P135L|TBL1Y_uc004frd.2_Missense_Mutation_p.P135L|TBL1Y_uc011nap.1_5'UTR	NM_033284	NP_150600	Q9BQ87	TBL1Y_HUMAN	transducin beta-like 1Y	135					transcription, DNA-dependent						0						CAAAATCCTCCAAAGAACCGA	0.547													23	14					0	0	1	0	0
TBL1Y	90665	broad.mit.edu	37	Y	6948775	6948775	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:6948775C>T	uc004frb.2	+	14	1605	c.958C>T	c.(958-960)CCC>TCC	p.P320S	TBL1Y_uc004frc.2_Missense_Mutation_p.P320S|TBL1Y_uc004frd.2_Missense_Mutation_p.P320S|TBL1Y_uc011nap.1_Missense_Mutation_p.P162S	NM_033284	NP_150600	Q9BQ87	TBL1Y_HUMAN	transducin beta-like 1Y	320	WD 4.				transcription, DNA-dependent						0						TGCTGCAGCCCCCGCCCTTGA	0.507													28	21					0	0	1	0	0
TSPY1	7258	broad.mit.edu	37	Y	9305956	9305956	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:9305956C>T	uc004frw.3	+	3	658	c.612C>T	c.(610-612)TTC>TTT	p.F204F	TSPY1_uc004frx.3_Silent_p.F204F|TSPY1_uc010nwp.1_Intron	NM_003308	NP_003299	Q01534	TSPY1_HUMAN	testis specific protein, Y-linked 1	204					cell differentiation|cell proliferation|gonadal mesoderm development|nucleosome assembly|spermatogenesis	cytoplasm|nucleus	identical protein binding				0						TCATGTTGTTCTTTCGGAGTA	0.478													47	272					0	0	1	0	0
USP9Y	8287	broad.mit.edu	37	Y	14889987	14889987	+	Missense_Mutation	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:14889987C>T	uc004fst.1	+	20	3619	c.2674C>T	c.(2674-2676)CGG>TGG	p.R892W	USP9Y_uc010nwu.1_RNA	NM_004654	NP_004645	O00507	USP9Y_HUMAN	ubiquitin specific protease 9, Y-linked	892					BMP signaling pathway|protein deubiquitination|spermatogenesis|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						TCTTATAGTTCGGTTTCCAAA	0.333													15	18					0	0	1	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16734078	16734078	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:16734078C>T	uc004ftg.2	+	2	331	c.79C>T	c.(79-81)CTG>TTG	p.L27L	NLGN4Y_uc004fte.2_Intron|NLGN4Y_uc011nas.1_Silent_p.L27L|NLGN4Y_uc004ftf.2_5'UTR|NLGN4Y_uc004fth.2_Silent_p.L27L|NLGN4Y_uc004fti.3_Silent_p.L27L	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	27					brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						CAATGTTCTTCTGTGGATAAC	0.458													16	38					0	0	1	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16734107	16734107	+	Silent	SNP	C	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:16734107C>T	uc004ftg.2	+	2	360	c.108C>T	c.(106-108)TTC>TTT	p.F36F	NLGN4Y_uc004fte.2_Intron|NLGN4Y_uc011nas.1_Silent_p.F36F|NLGN4Y_uc004ftf.2_5'UTR|NLGN4Y_uc004fth.2_Silent_p.F36F|NLGN4Y_uc004fti.3_Silent_p.F36F	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	36					brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						CCATCAAGTTCACCCTCATTG	0.468													30	31					0	0	1	0	0
KDM5D	8284	broad.mit.edu	37	Y	21878326	21878326	+	Missense_Mutation	SNP	G	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:21878326G>C	uc004fug.2	-	15	2158	c.1870C>G	c.(1870-1872)CGC>GGC	p.R624G	KDM5D_uc011naz.1_Missense_Mutation_p.R655G|KDM5D_uc010nwy.2_Missense_Mutation_p.R567G|KDM5D_uc011nba.1_Missense_Mutation_p.R624G|KDM5D_uc004fuf.2_5'Flank	NM_004653	NP_004644	Q9BY66	KDM5D_HUMAN	jumonji, AT rich interactive domain 1D isoform	624	JmjC.				chromatin modification|spermatogenesis	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1					Vitamin C(DB00126)	CGGAGCCGGCGGTAGTGTTCA	0.527													25	14					0	0	1	0	0
KDM5D	8284	broad.mit.edu	37	Y	21903332	21903332	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:21903332G>A	uc004fug.2	-	5	682	c.394C>T	c.(394-396)CGT>TGT	p.R132C	KDM5D_uc011naz.1_Missense_Mutation_p.R132C|KDM5D_uc010nwy.2_Intron|KDM5D_uc011nba.1_Missense_Mutation_p.R132C|KDM5D_uc004fuh.2_Missense_Mutation_p.R132C	NM_004653	NP_004644	Q9BY66	KDM5D_HUMAN	jumonji, AT rich interactive domain 1D isoform	132	ARID.				chromatin modification|spermatogenesis	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1					Vitamin C(DB00126)	GCCCACCGACGATCCTTGCAG	0.478													10	16					0	0	1	0	0
RBMY2FP	159162	broad.mit.edu	37	Y	24460745	24460745	+	Missense_Mutation	SNP	G	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrY:24460745G>A	uc004fvc.2	+	4	435	c.319G>A	c.(319-321)GGA>AGA	p.G107R	RBMY1F_uc011nbh.1_Intron|RBMY1F_uc004fvd.2_Intron	NR_002193				SubName: Full=HCG1658793, isoform CRA_b; SubName: Full=Putative uncharacterized protein RBMY2FP;												0						AAGCCCTTCAGGATGTCTGAG	0.448													8	9					0	0	1	0	0
GRHL3	57822	broad.mit.edu	37	1	24671417	24671417	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:24671417delA	uc001biy.2	+	12	1511	c.1465delA	c.(1465-1467)AACfs	p.N489fs	GRHL3_uc001bix.2_Frame_Shift_Del_p.N484fs|GRHL3_uc001biz.2_Frame_Shift_Del_p.N391fs	NM_021180	NP_067003	Q8TE85	GRHL3_HUMAN	sister-of-mammalian grainyhead protein isoform	484					regulation of actin cytoskeleton organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00171)|all_lung(284;0.00226)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;8.72e-25)|Colorectal(126;4.38e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00377)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.143)		CAGCAGCTCCAACAGGTATGG	0.607													27	54	---	---	---	---					
FLG	2312	broad.mit.edu	37	1	152286683	152286684	+	Frame_Shift_Ins	INS	-	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr1:152286683_152286684insT	uc001ezu.1	-	3	714_715	c.678_679insA	c.(676-681)AAATGGfs	p.K226fs	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	226_227					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATTGTATCCATTTTTGAGTCA	0.347									Ichthyosis				31	108	---	---	---	---					
GTPBP4	23560	broad.mit.edu	37	10	1063100	1063100	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:1063100delT	uc001ift.2	+	17	1909	c.1838delT	c.(1837-1839)GTGfs	p.V613fs	GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Frame_Shift_Del_p.V497fs|GTPBP4_uc010qae.1_Frame_Shift_Del_p.V566fs	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	613					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		GATAGACACGTGTTTGATATG	0.473													42	111	---	---	---	---					
STOX1	219736	broad.mit.edu	37	10	70645617	70645628	+	In_Frame_Del	DEL	AAAGACTCAGAA	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr10:70645617_70645628delAAAGACTCAGAA	uc001jos.2	+	3	2152_2163	c.2065_2076delAAAGACTCAGAA	c.(2065-2076)AAAGACTCAGAAdel	p.KDSE689del	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_In_Frame_Del_p.KDSE579del	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	689_692						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						AAGACAAGACAAAGACTCAGAAGAATTATTGA	0.406													18	209	---	---	---	---					
WNK1	65125	broad.mit.edu	37	12	970297	970297	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:970297delA	uc001qio.3	+	7	2246	c.1739delA	c.(1738-1740)GAAfs	p.E580fs	WNK1_uc001qip.3_Frame_Shift_Del_p.E580fs|WNK1_uc001qir.3_Frame_Shift_Del_p.E27fs	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	580					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GAGGAGCAAGAAAAAAAAAAG	0.468													8	156	---	---	---	---					
SP1	6667	broad.mit.edu	37	12	53776654	53776666	+	Frame_Shift_Del	DEL	CCAGCTTGGTATC	-	-	rs139480666	byFrequency	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:53776654_53776666delCCAGCTTGGTATC	uc001scw.2	+	3	1020_1032	c.923_935delCCAGCTTGGTATC	c.(922-936)GCCAGCTTGGTATCAfs	p.A308fs	SP1_uc010sog.1_Frame_Shift_Del_p.A301fs	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	308_312	Transactivation domain B (Gln-rich).|Ser/Thr-rich.				positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		ATCAGTTCTGCCAGCTTGGTATCATCACAAGCC	0.512													13	158	---	---	---	---					
CCDC38	120935	broad.mit.edu	37	12	96282260	96282260	+	Frame_Shift_Del	DEL	C	-	-	rs146332701		TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:96282260delC	uc001tek.1	-	10	1130	c.896delG	c.(895-897)CGCfs	p.R299fs		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	299										skin(1)	1						CTCTGGAGTGCGAGTCAGGCT	0.403													96	175	---	---	---	---					
NR1H4	9971	broad.mit.edu	37	12	100904848	100904852	+	Frame_Shift_Del	DEL	TGAGC	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr12:100904848_100904852delTGAGC	uc001tht.1	+	2	430_434	c.402_406delTGAGC	c.(400-408)GATGAGCTGfs	p.D134fs	NR1H4_uc001thp.1_Frame_Shift_Del_p.D124fs|NR1H4_uc001thq.1_Frame_Shift_Del_p.D124fs|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Frame_Shift_Del_p.D124fs|NR1H4_uc010svk.1_Frame_Shift_Del_p.D124fs|NR1H4_uc001ths.1_Frame_Shift_Del_p.D134fs	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	134_136	Nuclear receptor.				bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TCAAAGGGGATGAGCTGTGTGTTGT	0.512													44	126	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	22090554	22090555	+	Frame_Shift_Ins	INS	-	A	A			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr14:22090554_22090555insA	uc001wbi.2	+	2	206_207	c.193_194insA	c.(193-195)CAAfs	p.Q65fs						SubName: Full=Putative uncharacterized protein ENSP00000374929;																		CTGGTACCAGCAACATGATGGC	0.485													70	178	---	---	---	---					
RYR3	6263	broad.mit.edu	37	15	33855092	33855092	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr15:33855092delG	uc001zhi.2	+	11	1097	c.1027delG	c.(1027-1029)GTTfs	p.V343fs	RYR3_uc010bar.2_Frame_Shift_Del_p.V343fs	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	343	Cytoplasmic (By similarity).|MIR 5.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGGCATGGGAGTTCCAGAAAT	0.433													27	55	---	---	---	---					
CCDC114	93233	broad.mit.edu	37	19	48800553	48800553	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:48800553delG	uc002pir.2	-	14	2376	c.1693delC	c.(1693-1695)CTCfs	p.L565fs	CCDC114_uc002piq.2_Frame_Shift_Del_p.L374fs|CCDC114_uc002pio.2_3'UTR	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	565										ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		CTGGAGCTGAGGCCGCCAAAA	0.642													15	47	---	---	---	---					
KLK12	43849	broad.mit.edu	37	19	51535204	51535204	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr19:51535204delG	uc002pvg.1	-	3	505	c.385delC	c.(385-387)CTGfs	p.L129fs	KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Intron|KLK12_uc010ycr.1_Intron|KLK12_uc010ycs.1_Intron|KLK12_uc002pvh.1_Frame_Shift_Del_p.L129fs|KLK12_uc002pvi.1_Frame_Shift_Del_p.L129fs|KLK12_uc002pvj.1_Intron	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	129	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		TCATTGGGCAGGGGCAGGGGT	0.697													13	87	---	---	---	---					
KBTBD10	10324	broad.mit.edu	37	2	170366496	170366496	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:170366496delA	uc002ueu.1	+	1	285	c.208delA	c.(208-210)AAAfs	p.K70fs	KBTBD10_uc010zdh.1_Intron	NM_006063	NP_006054	O60662	KBTBA_HUMAN	kelch repeat and BTB (POZ) domain containing 10	70	BTB.				striated muscle contraction	centrosome|nucleolus|plasma membrane|pseudopodium|ruffle					0						TGATGAGGCGAAAAAAAAGGA	0.388													7	267	---	---	---	---					
RBM45	129831	broad.mit.edu	37	2	178988920	178988920	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr2:178988920delA	uc002ulv.2	+	8	1227	c.1135delA	c.(1135-1137)AAAfs	p.K379fs		NM_152945	NP_694453	Q8IUH3	RBM45_HUMAN	RNA binding motif protein 45	381					cell differentiation|nervous system development	cytoplasm|nucleus	nucleotide binding|RNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.00957)|all cancers(119;0.037)			TCCATCATGCAAAAAAAAAGC	0.353													9	137	---	---	---	---					
FRG1B	284802	broad.mit.edu	37	20	29628226	29628226	+	Splice_Site	DEL	G	-	-	rs78710112	by1000genomes	TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr20:29628226delG	uc010ztl.1	+	3	171	c.139_splice	c.e3-1	p.G47_splice	FRG1B_uc002wvm.1_Splice_Site|FRG1B_uc010ztj.1_Splice_Site|FRG1B_uc010gdr.1_Splice_Site|FRG1B_uc010ztk.1_Splice_Site					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTTTCACTTAGGGGAAAATGG	0.318													11	317	---	---	---	---					
DSCAM	1826	broad.mit.edu	37	21	41427714	41427714	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr21:41427714delA	uc002yyq.1	-	29	5425	c.4973delT	c.(4972-4974)ATGfs	p.M1658fs	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1658	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GTCGATGTGCATTCGCAGGGT	0.453													77	165	---	---	---	---					
OR5H15	403274	broad.mit.edu	37	3	97887844	97887844	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:97887844delT	uc011bgu.1	+	1	301	c.301delT	c.(301-303)TTTfs	p.F101fs		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CAAGATACAATTTTTTTCCAT	0.383													9	317	---	---	---	---					
RASA2	5922	broad.mit.edu	37	3	141248562	141248562	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr3:141248562delT	uc003etz.1	+	4	368	c.368delT	c.(367-369)ATCfs	p.I123fs	RASA2_uc010huq.1_Frame_Shift_Del_p.I123fs|RASA2_uc003eua.1_Frame_Shift_Del_p.I123fs|RASA2_uc011bnc.1_5'UTR	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	123					intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						AAAGTAGCCATCAAAAAAGAA	0.303													45	103	---	---	---	---					
HLA-F	3134	broad.mit.edu	37	6	29694802	29694803	+	Frame_Shift_Ins	INS	-	T	T			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29694802_29694803insT	uc003nno.3	+	7	1303_1304	c.1179_1180insT	c.(1177-1182)TTGTTTfs	p.L393fs	HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron|LOC285830_uc003nnp.2_RNA|LOC285830_uc011dlz.1_RNA	NM_001098479	NP_001091949	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	Error:Variant_position_missing_in_P30511_after_alignment					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						TGTGGATCTTGTTTTTTTTGTG	0.535													8	412	---	---	---	---					
HLA-J	3137	broad.mit.edu	37	6	29977389	29977393	+	Frame_Shift_Del	DEL	CTTCT	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr6:29977389_29977393delCTTCT	uc003rtl.3	+	5	770_774	c.408_412delCTTCT	c.(406-414)GACTTCTCTfs	p.D136fs	HLA-G_uc011dmb.1_3'UTR|NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_RNA|HLA-J_uc003nov.3_RNA					Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038).												0						AGAACCCTGACTTCTCTTTCTGCAA	0.488													8	45	---	---	---	---					
KGFLP2	654466	broad.mit.edu	37	9	41962602	41962602	+	RNA	DEL	G	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:41962602delG	uc004aca.3	-	3		c.907delC				NR_003670				Homo sapiens cDNA FLJ76381 complete cds.												0						TTCTTTCTTTGTTTTTTTTCC	0.373													8	101	---	---	---	---					
ENTPD2	954	broad.mit.edu	37	9	139946772	139946781	+	Frame_Shift_Del	DEL	GAAGAACCAG	-	-			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chr9:139946772_139946781delGAAGAACCAG	uc004ckw.1	-	2	193_202	c.137_146delCTGGTTCTTC	c.(136-147)GCTGGTTCTTCAfs	p.A46fs	ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Frame_Shift_Del_p.A46fs	NM_203468	NP_982293	Q9Y5L3	ENTP2_HUMAN	ectonucleoside triphosphate diphosphohydrolase 2	46_49	Extracellular (Potential).					integral to membrane	ATP binding				0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GGACGTGTGTGAAGAACCAGCGTCCAGGAC	0.605													11	135	---	---	---	---					
IRS4	8471	broad.mit.edu	37	X	107977802	107977803	+	Frame_Shift_Ins	INS	-	C	C			TCGA-FW-A3R5-06A-11D-A23B-08	TCGA-FW-A3R5-11A-11D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	0fbe8943-60cd-4c58-b502-91f50f33f7d6	4e26c9db-ec8a-4d88-9f74-a45db7287a39	g.chrX:107977802_107977803insC	uc004eoc.2	-	1	1805_1806	c.1772_1773insG	c.(1771-1773)GGCfs	p.G591fs		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	591						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CTGAGCCTTTGCCCCCCCCAGA	0.545													8	281	---	---	---	---					
